AC241_RS00005	SM00382	ATPases associated with a variety of cellular activities
AC241_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
AC241_RS00010	SM00480	DNA polymerase III beta subunit
AC241_RS00025	SM00387	Histidine kinase-like ATPases
AC241_RS00025	SM00433	TopoisomeraseII
AC241_RS00030	SM00434	DNA Topoisomerase IV
AC241_RS00065	SM00116	Domain in cystathionine beta-synthase and other proteins.
AC241_RS00065	SM01240	AC241_RS00065
AC241_RS00070	SM00936	Penicillin-binding protein 5, C-terminal domain 
AC241_RS00125	SM00382	ATPases associated with a variety of cellular activities
AC241_RS00135	SM00493	AC241_RS00135
AC241_RS00210	SM00465	GIY-YIG type nucleases (URI domain)
AC241_RS00220	SM00966	SpoVT / AbrB like domain 
AC241_RS00235	SM00493	AC241_RS00235
AC241_RS00240	SM00650	Ribosomal RNA adenine dimethylases
AC241_RS00285	SM01400	AC241_RS00285
AC241_RS00300	SM00487	DEAD-like helicases superfamily
AC241_RS00300	SM00490	helicase superfamily c-terminal domain
AC241_RS00300	SM00982	AC241_RS00300
AC241_RS00300	SM01058	CarD-like/TRCF domain
AC241_RS00305	SM00966	SpoVT / AbrB like domain 
AC241_RS00320	SM00363	S4 RNA-binding domain
AC241_RS00340	SM00316	Ribosomal protein S1-like RNA-binding domain
AC241_RS00355	SM00331	Sigma factor PP2C-like phosphatases
AC241_RS00355	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AC241_RS00360	SM00977	TilS substrate C-terminal domain
AC241_RS00370	SM00382	ATPases associated with a variety of cellular activities
AC241_RS00410	SM00905	Dihydroneopterin aldolase
AC241_RS00420	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS00525	SM00382	ATPases associated with a variety of cellular activities
AC241_RS00525	SM01086	C-terminal, D2-small domain, of ClpB protein
AC241_RS00530	SM00382	ATPases associated with a variety of cellular activities
AC241_RS00540	SM00670	Large family of predicted nucleotide-binding domains
AC241_RS00565	SM00840	AC241_RS00565
AC241_RS00570	SM00535	Ribonuclease III family
AC241_RS00575	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AC241_RS00585	SM00421	helix_turn_helix, Lux Regulon
AC241_RS00600	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AC241_RS00605	SM00649	Ribosomal protein L11/L12
AC241_RS00635	SM00663	RNA polymerase I subunit A N-terminus
AC241_RS00655	SM00838	Elongation factor G C-terminus
AC241_RS00655	SM00889	Elongation factor G, domain IV
AC241_RS00665	SM01403	AC241_RS00665
AC241_RS00685	SM01382	AC241_RS00685
AC241_RS00685	SM01383	AC241_RS00685
AC241_RS00700	SM00322	K homology RNA-binding domain
AC241_RS00720	SM01374	AC241_RS00720
AC241_RS00725	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AC241_RS00785	SM00316	Ribosomal protein S1-like RNA-binding domain
AC241_RS00805	SM00662	RNA polymerases D
AC241_RS00815	SM00382	ATPases associated with a variety of cellular activities
AC241_RS00820	SM00382	ATPases associated with a variety of cellular activities
AC241_RS00850	SM00646	AC241_RS00850
AC241_RS00865	SM01251	AC241_RS00865
AC241_RS01000	SM00382	ATPases associated with a variety of cellular activities
AC241_RS01000	SM00930	AC241_RS01000
AC241_RS01010	SM00829	Enoylreductase
AC241_RS01065	SM00382	ATPases associated with a variety of cellular activities
AC241_RS01070	SM00382	ATPases associated with a variety of cellular activities
AC241_RS01085	SM00342	helix_turn_helix, arabinose operon control protein
AC241_RS01180	SM00563	Phosphate acyltransferases
AC241_RS01190	SM00354	helix_turn _helix lactose operon repressor
AC241_RS01245	SM00382	ATPases associated with a variety of cellular activities
AC241_RS01270	SM00382	ATPases associated with a variety of cellular activities
AC241_RS01275	SM00382	ATPases associated with a variety of cellular activities
AC241_RS01350	SM00487	DEAD-like helicases superfamily
AC241_RS01350	SM00490	helicase superfamily c-terminal domain
AC241_RS01375	SM01005	Alanine racemase, C-terminal domain
AC241_RS01390	SM00316	Ribosomal protein S1-like RNA-binding domain
AC241_RS01390	SM00732	Likely ribonuclease with RNase H fold.
AC241_RS01400	SM00731	SprT homologues.
AC241_RS01510	SM00382	ATPases associated with a variety of cellular activities
AC241_RS01515	SM00881	CoA binding domain
AC241_RS01530	SM00883	Chaperonin 10 Kd subunit
AC241_RS01550	SM00448	cheY-homologous receiver domain
AC241_RS01550	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS01555	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS01555	SM00387	Histidine kinase-like ATPases
AC241_RS01555	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS01600	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS01700	SM01001	AIR carboxylase
AC241_RS01710	SM00998	Adenylosuccinate lyase C-terminus
AC241_RS01725	SM01211	AC241_RS01725
AC241_RS01750	SM00798	AICARFT/IMPCHase bienzyme
AC241_RS01750	SM00851	MGS-like domain
AC241_RS01755	SM01209	AC241_RS01755
AC241_RS01755	SM01210	AC241_RS01755
AC241_RS01775	SM00244	prohibitin homologues
AC241_RS01795	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AC241_RS01795	SM00292	breast cancer carboxy-terminal domain
AC241_RS01795	SM00532	Ligase N family
AC241_RS01820	SM00382	ATPases associated with a variety of cellular activities
AC241_RS01820	SM00930	AC241_RS01820
AC241_RS01850	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS01870	SM00845	GatB domain
AC241_RS01875	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AC241_RS01890	SM00382	ATPases associated with a variety of cellular activities
AC241_RS01950	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AC241_RS02000	SM01007	Class II Aldolase and Adducin N-terminal domain
AC241_RS02065	SM00387	Histidine kinase-like ATPases
AC241_RS02065	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS02120	SM00062	Bacterial periplasmic substrate-binding proteins
AC241_RS02120	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AC241_RS02125	SM00382	ATPases associated with a variety of cellular activities
AC241_RS02130	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS02130	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS02160	SM00100	Cyclic nucleotide-monophosphate binding domain
AC241_RS02160	SM00419	helix_turn_helix, cAMP Regulatory protein
AC241_RS02175	SM00642	Alpha-amylase domain
AC241_RS02195	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AC241_RS02195	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AC241_RS02195	SM00493	AC241_RS02195
AC241_RS02215	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS02215	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS02240	SM00382	ATPases associated with a variety of cellular activities
AC241_RS02245	SM00382	ATPases associated with a variety of cellular activities
AC241_RS02250	SM00060	Fibronectin type 3 domain
AC241_RS02250	SM00636	AC241_RS02250
AC241_RS02250	SM00637	AC241_RS02250
AC241_RS02285	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS02305	SM00946	Prolyl-tRNA synthetase, C-terminal
AC241_RS02350	SM00831	Cation transporter/ATPase, N-terminus
AC241_RS02360	SM00226	Low molecular weight phosphatase family
AC241_RS02450	SM00478	endonuclease III
AC241_RS02475	SM00382	ATPases associated with a variety of cellular activities
AC241_RS02495	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS02545	SM00984	UDP binding domain
AC241_RS02630	SM00478	endonuclease III
AC241_RS02630	SM00525	AC241_RS02630
AC241_RS02655	SM00382	ATPases associated with a variety of cellular activities
AC241_RS02675	SM00382	ATPases associated with a variety of cellular activities
AC241_RS02835	SM00567	E-Z type HEAT repeats
AC241_RS02850	SM00052	Putative diguanylate phosphodiesterase
AC241_RS02850	SM00091	PAS domain
AC241_RS02850	SM00267	diguanylate cyclase
AC241_RS02860	SM00763	PrkA AAA domain
AC241_RS02875	SM00365	Leucine-rich repeat, SDS22-like subfamily
AC241_RS02875	SM00369	Leucine-rich repeats, typical (most populated) subfamily
AC241_RS02875	SM00725	NEAr Transporter domain
AC241_RS02890	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AC241_RS02900	SM00244	prohibitin homologues
AC241_RS02905	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS02905	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS02910	SM00091	PAS domain
AC241_RS02910	SM00387	Histidine kinase-like ATPases
AC241_RS02915	SM00448	cheY-homologous receiver domain
AC241_RS02935	SM00248	ankyrin repeats
AC241_RS02950	SM00382	ATPases associated with a variety of cellular activities
AC241_RS02975	SM00448	cheY-homologous receiver domain
AC241_RS02975	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS02980	SM00387	Histidine kinase-like ATPases
AC241_RS02980	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS02995	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS02995	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS03000	SM00387	Histidine kinase-like ATPases
AC241_RS03005	SM00448	cheY-homologous receiver domain
AC241_RS03015	SM00919	Malic enzyme, NAD binding domain
AC241_RS03015	SM01274	AC241_RS03015
AC241_RS03030	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS03040	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS03040	SM00387	Histidine kinase-like ATPases
AC241_RS03040	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS03045	SM00448	cheY-homologous receiver domain
AC241_RS03045	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS03065	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AC241_RS03065	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AC241_RS03080	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AC241_RS03080	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AC241_RS03095	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS03110	SM00028	Tetratricopeptide repeats
AC241_RS03110	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS03155	SM01091	Transporter associated domain
AC241_RS03180	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS03210	SM00382	ATPases associated with a variety of cellular activities
AC241_RS03240	SM00327	von Willebrand factor (vWF) type A domain
AC241_RS03245	SM00382	ATPases associated with a variety of cellular activities
AC241_RS03250	SM00155	Phospholipase D. Active site motifs.
AC241_RS03260	SM00052	Putative diguanylate phosphodiesterase
AC241_RS03260	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AC241_RS03260	SM00267	diguanylate cyclase
AC241_RS03280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS03280	SM00866	AC241_RS03280
AC241_RS03290	SM00642	Alpha-amylase domain
AC241_RS03325	SM00382	ATPases associated with a variety of cellular activities
AC241_RS03330	SM00062	Bacterial periplasmic substrate-binding proteins
AC241_RS03330	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AC241_RS03380	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS03380	SM00387	Histidine kinase-like ATPases
AC241_RS03380	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS03385	SM00448	cheY-homologous receiver domain
AC241_RS03385	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS03425	SM00382	ATPases associated with a variety of cellular activities
AC241_RS03430	SM00382	ATPases associated with a variety of cellular activities
AC241_RS03440	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS03450	SM00354	helix_turn _helix lactose operon repressor
AC241_RS03465	SM00382	ATPases associated with a variety of cellular activities
AC241_RS03505	SM00829	Enoylreductase
AC241_RS03515	SM00770	Zinc dependent phospholipase C (alpha toxin)
AC241_RS03555	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS03565	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS03615	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS03715	SM00899	AC241_RS03715
AC241_RS03860	SM00116	Domain in cystathionine beta-synthase and other proteins.
AC241_RS03880	SM00287	Bacterial SH3 domain homologues
AC241_RS03890	SM00382	ATPases associated with a variety of cellular activities
AC241_RS03980	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS04005	SM00382	ATPases associated with a variety of cellular activities
AC241_RS04030	SM00382	ATPases associated with a variety of cellular activities
AC241_RS04130	SM00450	Rhodanese Homology Domain
AC241_RS04135	SM00450	Rhodanese Homology Domain
AC241_RS04135	SM00849	Metallo-beta-lactamase superfamily
AC241_RS04145	SM00450	Rhodanese Homology Domain
AC241_RS04150	SM00450	Rhodanese Homology Domain
AC241_RS04175	SM00829	Enoylreductase
AC241_RS04225	SM00287	Bacterial SH3 domain homologues
AC241_RS04235	SM00382	ATPases associated with a variety of cellular activities
AC241_RS04385	SM00344	helix_turn_helix ASNC type
AC241_RS04400	SM00422	helix_turn_helix, mercury resistance
AC241_RS04490	SM00382	ATPases associated with a variety of cellular activities
AC241_RS04495	SM00382	ATPases associated with a variety of cellular activities
AC241_RS04500	SM00062	Bacterial periplasmic substrate-binding proteins
AC241_RS04500	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AC241_RS04510	SM00382	ATPases associated with a variety of cellular activities
AC241_RS04580	SM00644	AC241_RS04580
AC241_RS04585	SM00729	Elongator protein 3, MiaB family, Radical SAM
AC241_RS04615	SM00047	Lysozyme subfamily 2
AC241_RS04650	SM00646	AC241_RS04650
AC241_RS04695	SM00382	ATPases associated with a variety of cellular activities
AC241_RS04700	SM00382	ATPases associated with a variety of cellular activities
AC241_RS04710	SM00849	Metallo-beta-lactamase superfamily
AC241_RS04740	SM00091	PAS domain
AC241_RS04740	SM00387	Histidine kinase-like ATPases
AC241_RS04745	SM00448	cheY-homologous receiver domain
AC241_RS04760	SM00487	DEAD-like helicases superfamily
AC241_RS04760	SM00490	helicase superfamily c-terminal domain
AC241_RS04845	SM00382	ATPases associated with a variety of cellular activities
AC241_RS04850	SM00448	cheY-homologous receiver domain
AC241_RS04850	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS04855	SM00387	Histidine kinase-like ATPases
AC241_RS04905	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS04925	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS04960	SM00287	Bacterial SH3 domain homologues
AC241_RS04975	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS04995	SM00460	Transglutaminase/protease-like homologues
AC241_RS05085	SM00331	Sigma factor PP2C-like phosphatases
AC241_RS05085	SM00448	cheY-homologous receiver domain
AC241_RS05090	SM00138	Methyltransferase, chemotaxis proteins 
AC241_RS05095	SM00387	Histidine kinase-like ATPases
AC241_RS05095	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS05095	SM00448	cheY-homologous receiver domain
AC241_RS05135	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS05135	SM00895	AC241_RS05135
AC241_RS05140	SM00829	Enoylreductase
AC241_RS05175	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AC241_RS05200	SM00028	Tetratricopeptide repeats
AC241_RS05220	SM00835	Cupin
AC241_RS05225	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS05320	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS05335	SM00382	ATPases associated with a variety of cellular activities
AC241_RS05500	SM00354	helix_turn _helix lactose operon repressor
AC241_RS05510	SM00849	Metallo-beta-lactamase superfamily
AC241_RS05555	SM00382	ATPases associated with a variety of cellular activities
AC241_RS05660	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AC241_RS05680	SM00342	helix_turn_helix, arabinose operon control protein
AC241_RS05680	SM00871	Bacterial transcription activator, effector binding domain
AC241_RS05690	SM00387	Histidine kinase-like ATPases
AC241_RS05690	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS05695	SM00448	cheY-homologous receiver domain
AC241_RS05695	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS05720	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS05720	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS05755	SM00357	Cold shock protein domain
AC241_RS05870	SM01060	AC241_RS05870
AC241_RS05880	SM00642	Alpha-amylase domain
AC241_RS05885	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS05895	SM00316	Ribosomal protein S1-like RNA-binding domain
AC241_RS05950	SM00382	ATPases associated with a variety of cellular activities
AC241_RS05950	SM01086	C-terminal, D2-small domain, of ClpB protein
AC241_RS05980	SM00825	Beta-ketoacyl synthase
AC241_RS06020	SM00382	ATPases associated with a variety of cellular activities
AC241_RS06025	SM00382	ATPases associated with a variety of cellular activities
AC241_RS06075	SM00155	Phospholipase D. Active site motifs.
AC241_RS06105	SM01118	AC241_RS06105
AC241_RS06115	SM00954	Region found in RelA / SpoT proteins
AC241_RS06360	SM01324	AC241_RS06360
AC241_RS06410	SM00861	Transketolase, pyrimidine binding domain
AC241_RS06415	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS06450	SM00382	ATPases associated with a variety of cellular activities
AC241_RS06510	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS06530	SM00382	ATPases associated with a variety of cellular activities
AC241_RS06550	SM00014	Acid phosphatase homologues
AC241_RS06600	SM00448	cheY-homologous receiver domain
AC241_RS06600	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS06605	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS06605	SM00387	Histidine kinase-like ATPases
AC241_RS06605	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS06610	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS06610	SM00895	AC241_RS06610
AC241_RS06680	SM00822	AC241_RS06680
AC241_RS06715	SM00382	ATPases associated with a variety of cellular activities
AC241_RS06740	SM00420	helix_turn_helix, Deoxyribose operon repressor
AC241_RS06740	SM01134	AC241_RS06740
AC241_RS06750	SM00365	Leucine-rich repeat, SDS22-like subfamily
AC241_RS06750	SM00369	Leucine-rich repeats, typical (most populated) subfamily
AC241_RS06750	SM00725	NEAr Transporter domain
AC241_RS06755	SM01007	Class II Aldolase and Adducin N-terminal domain
AC241_RS06775	SM00387	Histidine kinase-like ATPases
AC241_RS06775	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS06780	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS06800	SM00387	Histidine kinase-like ATPases
AC241_RS06800	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS06880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS06885	SM00382	ATPases associated with a variety of cellular activities
AC241_RS06895	SM00382	ATPases associated with a variety of cellular activities
AC241_RS06915	SM00344	helix_turn_helix ASNC type
AC241_RS07035	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS07110	SM00917	LeuA allosteric (dimerisation) domain
AC241_RS07115	SM01329	AC241_RS07115
AC241_RS07205	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS07215	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS07220	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS07260	SM00966	SpoVT / AbrB like domain 
AC241_RS07380	SM00507	HNH nucleases
AC241_RS07470	SM00287	Bacterial SH3 domain homologues
AC241_RS07470	SM00644	AC241_RS07470
AC241_RS07595	SM00387	Histidine kinase-like ATPases
AC241_RS07600	SM00421	helix_turn_helix, Lux Regulon
AC241_RS07600	SM00448	cheY-homologous receiver domain
AC241_RS07695	SM00091	PAS domain
AC241_RS07695	SM00387	Histidine kinase-like ATPases
AC241_RS07695	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS07715	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS07715	SM00387	Histidine kinase-like ATPases
AC241_RS07715	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS07770	SM00363	S4 RNA-binding domain
AC241_RS07790	SM00448	cheY-homologous receiver domain
AC241_RS07790	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS07795	SM00091	PAS domain
AC241_RS07795	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS07795	SM00387	Histidine kinase-like ATPases
AC241_RS07795	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS07805	SM00257	Lysin motif
AC241_RS07830	SM00487	DEAD-like helicases superfamily
AC241_RS07830	SM00490	helicase superfamily c-terminal domain
AC241_RS07840	SM00257	Lysin motif
AC241_RS07850	SM00422	helix_turn_helix, mercury resistance
AC241_RS07860	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AC241_RS07875	SM00644	AC241_RS07875
AC241_RS07885	SM00870	AC241_RS07885
AC241_RS07900	SM00316	Ribosomal protein S1-like RNA-binding domain
AC241_RS07905	SM01240	AC241_RS07905
AC241_RS07960	SM00411	bacterial (prokaryotic) histone like domain
AC241_RS07985	SM00562	AC241_RS07985
AC241_RS08005	SM00028	Tetratricopeptide repeats
AC241_RS08010	SM00914	AC241_RS08010
AC241_RS08065	SM00986	Uracil DNA glycosylase superfamily
AC241_RS08065	SM00987	UreE urease accessory protein, C-terminal domain 
AC241_RS08085	SM00851	MGS-like domain
AC241_RS08135	SM00479	AC241_RS08135
AC241_RS08135	SM00487	DEAD-like helicases superfamily
AC241_RS08135	SM00491	AC241_RS08135
AC241_RS08160	SM00478	endonuclease III
AC241_RS08170	SM00060	Fibronectin type 3 domain
AC241_RS08220	SM00981	AC241_RS08220
AC241_RS08230	SM00491	AC241_RS08230
AC241_RS08285	SM00450	Rhodanese Homology Domain
AC241_RS08315	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AC241_RS08315	SM00475	5'-3' exonuclease
AC241_RS08425	SM00357	Cold shock protein domain
AC241_RS08475	SM00422	helix_turn_helix, mercury resistance
AC241_RS08475	SM00871	Bacterial transcription activator, effector binding domain
AC241_RS08525	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS08570	SM00448	cheY-homologous receiver domain
AC241_RS08575	SM00073	Histidine Phosphotransfer domain
AC241_RS08575	SM00260	Two component signalling adaptor domain
AC241_RS08575	SM00387	Histidine kinase-like ATPases
AC241_RS08575	SM01231	AC241_RS08575
AC241_RS08595	SM00138	Methyltransferase, chemotaxis proteins 
AC241_RS08670	SM00382	ATPases associated with a variety of cellular activities
AC241_RS08705	SM00260	Two component signalling adaptor domain
AC241_RS08705	SM00448	cheY-homologous receiver domain
AC241_RS08790	SM00382	ATPases associated with a variety of cellular activities
AC241_RS08790	SM00962	SRP54-type protein, GTPase domain
AC241_RS08805	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AC241_RS08855	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS08875	SM00382	ATPases associated with a variety of cellular activities
AC241_RS08890	SM00849	Metallo-beta-lactamase superfamily
AC241_RS08890	SM01027	Beta-Casp domain
AC241_RS08930	SM00855	Phosphoglycerate mutase family
AC241_RS08950	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS08990	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS08990	SM00895	AC241_RS08990
AC241_RS09005	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AC241_RS09030	SM00422	helix_turn_helix, mercury resistance
AC241_RS09095	SM00028	Tetratricopeptide repeats
AC241_RS09100	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS09135	SM00421	helix_turn_helix, Lux Regulon
AC241_RS09135	SM00448	cheY-homologous receiver domain
AC241_RS09145	SM00382	ATPases associated with a variety of cellular activities
AC241_RS09165	SM00155	Phospholipase D. Active site motifs.
AC241_RS09185	SM00919	Malic enzyme, NAD binding domain
AC241_RS09185	SM01274	AC241_RS09185
AC241_RS09190	SM00387	Histidine kinase-like ATPases
AC241_RS09195	SM00448	cheY-homologous receiver domain
AC241_RS09200	SM00487	DEAD-like helicases superfamily
AC241_RS09200	SM00490	helicase superfamily c-terminal domain
AC241_RS09220	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS09410	SM00854	Bacterial capsule synthesis protein PGA_cap
AC241_RS09445	SM00850	LytTr DNA-binding domain
AC241_RS09490	SM00448	cheY-homologous receiver domain
AC241_RS09490	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS09495	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS09495	SM00387	Histidine kinase-like ATPases
AC241_RS09495	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS09515	SM00450	Rhodanese Homology Domain
AC241_RS09595	SM01133	AC241_RS09595
AC241_RS09605	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AC241_RS09625	SM01011	Aminopeptidase P, N-terminal domain
AC241_RS09645	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AC241_RS09645	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AC241_RS09645	SM00493	AC241_RS09645
AC241_RS09735	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AC241_RS09745	SM00382	ATPases associated with a variety of cellular activities
AC241_RS09750	SM00382	ATPases associated with a variety of cellular activities
AC241_RS09785	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS09805	SM00382	ATPases associated with a variety of cellular activities
AC241_RS09810	SM00382	ATPases associated with a variety of cellular activities
AC241_RS09875	SM00287	Bacterial SH3 domain homologues
AC241_RS09885	SM00382	ATPases associated with a variety of cellular activities
AC241_RS09890	SM00448	cheY-homologous receiver domain
AC241_RS09890	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS09895	SM00387	Histidine kinase-like ATPases
AC241_RS09895	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS09915	SM01022	AC241_RS09915
AC241_RS10050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS10075	SM00460	Transglutaminase/protease-like homologues
AC241_RS10100	SM00966	SpoVT / AbrB like domain 
AC241_RS10110	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS10145	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS10145	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS10225	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AC241_RS10280	SM00855	Phosphoglycerate mutase family
AC241_RS10330	SM00155	Phospholipase D. Active site motifs.
AC241_RS10355	SM01091	Transporter associated domain
AC241_RS10440	SM00244	prohibitin homologues
AC241_RS10450	SM00855	Phosphoglycerate mutase family
AC241_RS10460	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS10475	SM01005	Alanine racemase, C-terminal domain
AC241_RS10505	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS10600	SM00487	DEAD-like helicases superfamily
AC241_RS10600	SM00490	helicase superfamily c-terminal domain
AC241_RS10620	SM00829	Enoylreductase
AC241_RS10640	SM00849	Metallo-beta-lactamase superfamily
AC241_RS10655	SM00460	Transglutaminase/protease-like homologues
AC241_RS10670	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AC241_RS10690	SM00100	Cyclic nucleotide-monophosphate binding domain
AC241_RS10690	SM00419	helix_turn_helix, cAMP Regulatory protein
AC241_RS10695	SM00729	Elongator protein 3, MiaB family, Radical SAM
AC241_RS10705	SM00852	Probable molybdopterin binding domain
AC241_RS10765	SM00894	Excalibur calcium-binding domain
AC241_RS10805	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AC241_RS10810	SM00382	ATPases associated with a variety of cellular activities
AC241_RS10840	SM00567	E-Z type HEAT repeats
AC241_RS10840	SM00932	Scaffold protein Nfu/NifU N terminal
AC241_RS10860	SM00836	DALR anticodon binding domain
AC241_RS10860	SM01016	Arginyl tRNA synthetase N terminal dom
AC241_RS10870	SM00028	Tetratricopeptide repeats
AC241_RS10960	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS10975	SM00382	ATPases associated with a variety of cellular activities
AC241_RS11035	SM00563	Phosphate acyltransferases
AC241_RS11095	SM00646	AC241_RS11095
AC241_RS11140	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AC241_RS11145	SM00421	helix_turn_helix, Lux Regulon
AC241_RS11145	SM00448	cheY-homologous receiver domain
AC241_RS11160	SM00829	Enoylreductase
AC241_RS11185	SM01350	AC241_RS11185
AC241_RS11220	SM00382	ATPases associated with a variety of cellular activities
AC241_RS11260	SM01091	Transporter associated domain
AC241_RS11275	SM00387	Histidine kinase-like ATPases
AC241_RS11275	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS11290	SM00882	Coenzyme A transferase
AC241_RS11295	SM00882	Coenzyme A transferase
AC241_RS11310	SM00382	ATPases associated with a variety of cellular activities
AC241_RS11350	SM00219	Tyrosine kinase, catalytic domain
AC241_RS11360	SM00014	Acid phosphatase homologues
AC241_RS11550	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS11590	SM00823	Phosphopantetheine attachment site
AC241_RS11590	SM00824	Thioesterase
AC241_RS11595	SM00923	MbtH-like protein
AC241_RS11615	SM00411	bacterial (prokaryotic) histone like domain
AC241_RS11655	SM00363	S4 RNA-binding domain
AC241_RS11660	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AC241_RS11665	SM00382	ATPases associated with a variety of cellular activities
AC241_RS11700	SM00849	Metallo-beta-lactamase superfamily
AC241_RS11705	SM00860	SMI1 / KNR4 family
AC241_RS11730	SM00100	Cyclic nucleotide-monophosphate binding domain
AC241_RS11745	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS11755	SM00849	Metallo-beta-lactamase superfamily
AC241_RS11775	SM01059	Chloramphenicol acetyltransferase
AC241_RS11800	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS11835	SM00357	Cold shock protein domain
AC241_RS11860	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AC241_RS11900	SM00382	ATPases associated with a variety of cellular activities
AC241_RS11905	SM00382	ATPases associated with a variety of cellular activities
AC241_RS11930	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS11955	SM00835	Cupin
AC241_RS12025	SM01207	AC241_RS12025
AC241_RS12040	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS12055	SM00849	Metallo-beta-lactamase superfamily
AC241_RS12070	SM00487	DEAD-like helicases superfamily
AC241_RS12070	SM00490	helicase superfamily c-terminal domain
AC241_RS12115	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS12120	SM00855	Phosphoglycerate mutase family
AC241_RS12170	SM00421	helix_turn_helix, Lux Regulon
AC241_RS12175	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS12180	SM00966	SpoVT / AbrB like domain 
AC241_RS12200	SM00936	Penicillin-binding protein 5, C-terminal domain 
AC241_RS12225	SM00823	Phosphopantetheine attachment site
AC241_RS12230	SM00823	Phosphopantetheine attachment site
AC241_RS12270	SM01022	AC241_RS12270
AC241_RS12355	SM00382	ATPases associated with a variety of cellular activities
AC241_RS12380	SM00878	Biotin carboxylase C-terminal domain
AC241_RS12465	SM00387	Histidine kinase-like ATPases
AC241_RS12465	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS12470	SM00448	cheY-homologous receiver domain
AC241_RS12470	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS12515	SM00342	helix_turn_helix, arabinose operon control protein
AC241_RS12545	SM00382	ATPases associated with a variety of cellular activities
AC241_RS12565	SM00422	helix_turn_helix, mercury resistance
AC241_RS12565	SM00871	Bacterial transcription activator, effector binding domain
AC241_RS12605	SM00382	ATPases associated with a variety of cellular activities
AC241_RS12630	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS12705	SM00448	cheY-homologous receiver domain
AC241_RS12705	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS12710	SM00387	Histidine kinase-like ATPases
AC241_RS12725	SM00382	ATPases associated with a variety of cellular activities
AC241_RS12745	SM00382	ATPases associated with a variety of cellular activities
AC241_RS12775	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS12780	SM01209	AC241_RS12780
AC241_RS12820	SM00487	DEAD-like helicases superfamily
AC241_RS12820	SM00490	helicase superfamily c-terminal domain
AC241_RS12835	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS12840	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS12860	SM00966	SpoVT / AbrB like domain 
AC241_RS12975	SM00507	HNH nucleases
AC241_RS13065	SM00644	AC241_RS13065
AC241_RS13165	SM00091	PAS domain
AC241_RS13165	SM00387	Histidine kinase-like ATPases
AC241_RS13165	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS13195	SM00382	ATPases associated with a variety of cellular activities
AC241_RS13205	SM00387	Histidine kinase-like ATPases
AC241_RS13205	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS13265	SM00448	cheY-homologous receiver domain
AC241_RS13265	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS13270	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS13270	SM00387	Histidine kinase-like ATPases
AC241_RS13270	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS13275	SM00829	Enoylreductase
AC241_RS13280	SM00014	Acid phosphatase homologues
AC241_RS13285	SM00740	AC241_RS13285
AC241_RS13325	SM00422	helix_turn_helix, mercury resistance
AC241_RS13335	SM00422	helix_turn_helix, mercury resistance
AC241_RS13335	SM00871	Bacterial transcription activator, effector binding domain
AC241_RS13360	SM00287	Bacterial SH3 domain homologues
AC241_RS13375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS13440	SM00480	DNA polymerase III beta subunit
AC241_RS13535	SM00465	GIY-YIG type nucleases (URI domain)
AC241_RS13610	SM00448	cheY-homologous receiver domain
AC241_RS13610	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS13615	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS13615	SM00387	Histidine kinase-like ATPases
AC241_RS13615	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS13630	SM00382	ATPases associated with a variety of cellular activities
AC241_RS13645	SM00014	Acid phosphatase homologues
AC241_RS13650	SM00642	Alpha-amylase domain
AC241_RS13670	SM00871	Bacterial transcription activator, effector binding domain
AC241_RS13695	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS13700	SM00829	Enoylreductase
AC241_RS13820	SM00382	ATPases associated with a variety of cellular activities
AC241_RS13840	SM00420	helix_turn_helix, Deoxyribose operon repressor
AC241_RS13840	SM01134	AC241_RS13840
AC241_RS13880	SM00861	Transketolase, pyrimidine binding domain
AC241_RS13900	SM00342	helix_turn_helix, arabinose operon control protein
AC241_RS13950	SM00116	Domain in cystathionine beta-synthase and other proteins.
AC241_RS13950	SM00382	ATPases associated with a variety of cellular activities
AC241_RS13985	SM00060	Fibronectin type 3 domain
AC241_RS13985	SM00495	Chitin-binding domain type 3
AC241_RS14085	SM00341	Helicase and RNase D C-terminal
AC241_RS14085	SM00487	DEAD-like helicases superfamily
AC241_RS14085	SM00490	helicase superfamily c-terminal domain
AC241_RS14085	SM00956	AC241_RS14085
AC241_RS14125	SM00646	AC241_RS14125
AC241_RS14145	SM01131	AC241_RS14145
AC241_RS14160	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AC241_RS14185	SM01130	AC241_RS14185
AC241_RS14205	SM00091	PAS domain
AC241_RS14205	SM00382	ATPases associated with a variety of cellular activities
AC241_RS14275	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AC241_RS14300	SM00248	ankyrin repeats
AC241_RS14320	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
AC241_RS14330	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS14330	SM00387	Histidine kinase-like ATPases
AC241_RS14330	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS14335	SM00448	cheY-homologous receiver domain
AC241_RS14335	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS14540	SM00382	ATPases associated with a variety of cellular activities
AC241_RS14545	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS14620	SM00062	Bacterial periplasmic substrate-binding proteins
AC241_RS14625	SM00382	ATPases associated with a variety of cellular activities
AC241_RS14650	SM00028	Tetratricopeptide repeats
AC241_RS14710	SM00849	Metallo-beta-lactamase superfamily
AC241_RS14750	SM00382	ATPases associated with a variety of cellular activities
AC241_RS14790	SM00830	Chorismate mutase type II
AC241_RS14830	SM00860	SMI1 / KNR4 family
AC241_RS14835	SM00287	Bacterial SH3 domain homologues
AC241_RS14905	SM00382	ATPases associated with a variety of cellular activities
AC241_RS14925	SM01133	AC241_RS14925
AC241_RS14950	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS14965	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AC241_RS14980	SM00346	helix_turn_helix isocitrate lyase regulation
AC241_RS15000	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS15030	SM00098	Alkaline phosphatase homologues
AC241_RS15040	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS15115	SM01060	AC241_RS15115
AC241_RS15160	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS15165	SM00889	Elongation factor G, domain IV
AC241_RS15180	SM00773	Proposed nucleic acid binding domain
AC241_RS15190	SM00382	ATPases associated with a variety of cellular activities
AC241_RS15215	SM00342	helix_turn_helix, arabinose operon control protein
AC241_RS15215	SM00871	Bacterial transcription activator, effector binding domain
AC241_RS15240	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS15360	SM00797	Allophanate hydrolase subunit 2
AC241_RS15365	SM00796	Allophanate hydrolase subunit 1
AC241_RS15370	SM00346	helix_turn_helix isocitrate lyase regulation
AC241_RS15390	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS15560	SM00382	ATPases associated with a variety of cellular activities
AC241_RS15580	SM00226	Low molecular weight phosphatase family
AC241_RS15595	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS15605	SM00344	helix_turn_helix ASNC type
AC241_RS15685	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS15715	SM00448	cheY-homologous receiver domain
AC241_RS15715	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS15720	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS15720	SM00387	Histidine kinase-like ATPases
AC241_RS15720	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS15750	SM00421	helix_turn_helix, Lux Regulon
AC241_RS15750	SM00448	cheY-homologous receiver domain
AC241_RS15760	SM00382	ATPases associated with a variety of cellular activities
AC241_RS15765	SM00387	Histidine kinase-like ATPases
AC241_RS15765	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS15770	SM00448	cheY-homologous receiver domain
AC241_RS15770	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS15800	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS15875	SM00382	ATPases associated with a variety of cellular activities
AC241_RS15885	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS15900	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS15900	SM00387	Histidine kinase-like ATPases
AC241_RS15900	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS15905	SM00448	cheY-homologous receiver domain
AC241_RS15905	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS15975	SM00342	helix_turn_helix, arabinose operon control protein
AC241_RS15990	SM00644	AC241_RS15990
AC241_RS16015	SM00854	Bacterial capsule synthesis protein PGA_cap
AC241_RS16040	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS16100	SM00382	ATPases associated with a variety of cellular activities
AC241_RS16215	SM00382	ATPases associated with a variety of cellular activities
AC241_RS16230	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS16285	SM01266	AC241_RS16285
AC241_RS16360	SM01091	Transporter associated domain
AC241_RS16365	SM00422	helix_turn_helix, mercury resistance
AC241_RS16440	SM01350	AC241_RS16440
AC241_RS16445	SM00861	Transketolase, pyrimidine binding domain
AC241_RS16465	SM00829	Enoylreductase
AC241_RS16475	SM00829	Enoylreductase
AC241_RS16500	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS16500	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS16565	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS16580	SM00914	AC241_RS16580
AC241_RS16605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS16605	SM00866	AC241_RS16605
AC241_RS16650	SM00849	Metallo-beta-lactamase superfamily
AC241_RS16715	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS16720	SM00636	AC241_RS16720
AC241_RS16765	SM00871	Bacterial transcription activator, effector binding domain
AC241_RS16770	SM00420	helix_turn_helix, Deoxyribose operon repressor
AC241_RS16780	SM00382	ATPases associated with a variety of cellular activities
AC241_RS16800	SM00849	Metallo-beta-lactamase superfamily
AC241_RS16805	SM00641	Glycosyl hydrolases family 25
AC241_RS16870	SM00849	Metallo-beta-lactamase superfamily
AC241_RS16980	SM00829	Enoylreductase
AC241_RS16985	SM00855	Phosphoglycerate mutase family
AC241_RS16995	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AC241_RS16995	SM00534	ATPase domain of DNA mismatch repair MUTS family
AC241_RS17000	SM00642	Alpha-amylase domain
AC241_RS17025	SM00422	helix_turn_helix, mercury resistance
AC241_RS17025	SM00871	Bacterial transcription activator, effector binding domain
AC241_RS17120	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS17125	SM00829	Enoylreductase
AC241_RS17135	SM00028	Tetratricopeptide repeats
AC241_RS17205	SM00148	Phospholipase C, catalytic domain (part); domain X
AC241_RS17210	SM00060	Fibronectin type 3 domain
AC241_RS17245	SM00060	Fibronectin type 3 domain
AC241_RS17245	SM00495	Chitin-binding domain type 3
AC241_RS17245	SM01276	AC241_RS17245
AC241_RS17260	SM00052	Putative diguanylate phosphodiesterase
AC241_RS17260	SM00091	PAS domain
AC241_RS17260	SM00267	diguanylate cyclase
AC241_RS17265	SM00382	ATPases associated with a variety of cellular activities
AC241_RS17280	SM00646	AC241_RS17280
AC241_RS17310	SM00387	Histidine kinase-like ATPases
AC241_RS17310	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS17315	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AC241_RS17340	SM00062	Bacterial periplasmic substrate-binding proteins
AC241_RS17340	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AC241_RS17345	SM00382	ATPases associated with a variety of cellular activities
AC241_RS17380	SM00479	AC241_RS17380
AC241_RS17385	SM00357	Cold shock protein domain
AC241_RS17415	SM01022	AC241_RS17415
AC241_RS17470	SM00822	AC241_RS17470
AC241_RS17525	SM00852	Probable molybdopterin binding domain
AC241_RS17540	SM00729	Elongator protein 3, MiaB family, Radical SAM
AC241_RS17560	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AC241_RS17560	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AC241_RS17660	SM00382	ATPases associated with a variety of cellular activities
AC241_RS17675	SM00434	DNA Topoisomerase IV
AC241_RS17680	SM00387	Histidine kinase-like ATPases
AC241_RS17680	SM00433	TopoisomeraseII
AC241_RS17690	SM00881	CoA binding domain
AC241_RS17695	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AC241_RS17700	SM00448	cheY-homologous receiver domain
AC241_RS17700	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS17715	SM01207	AC241_RS17715
AC241_RS17730	SM00257	Lysin motif
AC241_RS17730	SM00636	AC241_RS17730
AC241_RS17745	SM00479	AC241_RS17745
AC241_RS17760	SM00382	ATPases associated with a variety of cellular activities
AC241_RS17805	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AC241_RS17865	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS17910	SM00988	UreE urease accessory protein, N-terminal domain
AC241_RS17935	SM00644	AC241_RS17935
AC241_RS17935	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
AC241_RS17940	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AC241_RS17955	SM00091	PAS domain
AC241_RS17955	SM00387	Histidine kinase-like ATPases
AC241_RS17955	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS17990	SM01058	CarD-like/TRCF domain
AC241_RS18075	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18135	SM00287	Bacterial SH3 domain homologues
AC241_RS18135	SM00641	Glycosyl hydrolases family 25
AC241_RS18140	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18145	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18160	SM00861	Transketolase, pyrimidine binding domain
AC241_RS18175	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18180	SM00062	Bacterial periplasmic substrate-binding proteins
AC241_RS18195	SM00857	Resolvase, N terminal domain
AC241_RS18230	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS18235	SM01230	AC241_RS18235
AC241_RS18240	SM00422	helix_turn_helix, mercury resistance
AC241_RS18265	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18305	SM00287	Bacterial SH3 domain homologues
AC241_RS18320	SM00420	helix_turn_helix, Deoxyribose operon repressor
AC241_RS18320	SM01134	AC241_RS18320
AC241_RS18350	SM00636	AC241_RS18350
AC241_RS18370	SM00411	bacterial (prokaryotic) histone like domain
AC241_RS18400	SM00421	helix_turn_helix, Lux Regulon
AC241_RS18415	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18440	SM00342	helix_turn_helix, arabinose operon control protein
AC241_RS18450	SM00478	endonuclease III
AC241_RS18480	SM00052	Putative diguanylate phosphodiesterase
AC241_RS18480	SM00091	PAS domain
AC241_RS18480	SM00267	diguanylate cyclase
AC241_RS18530	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS18540	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS18540	SM00866	AC241_RS18540
AC241_RS18550	SM00148	Phospholipase C, catalytic domain (part); domain X
AC241_RS18560	SM00257	Lysin motif
AC241_RS18585	SM00853	MutL C terminal dimerisation domain
AC241_RS18585	SM01340	AC241_RS18585
AC241_RS18590	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AC241_RS18590	SM00534	ATPase domain of DNA mismatch repair MUTS family
AC241_RS18605	SM00729	Elongator protein 3, MiaB family, Radical SAM
AC241_RS18635	SM00322	K homology RNA-binding domain
AC241_RS18635	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AC241_RS18645	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18650	SM00852	Probable molybdopterin binding domain
AC241_RS18700	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18710	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS18710	SM00866	AC241_RS18710
AC241_RS18715	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18715	SM00843	AC241_RS18715
AC241_RS18730	SM00849	Metallo-beta-lactamase superfamily
AC241_RS18735	SM01130	AC241_RS18735
AC241_RS18745	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AC241_RS18775	SM00316	Ribosomal protein S1-like RNA-binding domain
AC241_RS18775	SM00322	K homology RNA-binding domain
AC241_RS18780	SM01387	AC241_RS18780
AC241_RS18785	SM00904	Riboflavin kinase
AC241_RS18820	SM00316	Ribosomal protein S1-like RNA-binding domain
AC241_RS18820	SM00322	K homology RNA-binding domain
AC241_RS18830	SM00479	AC241_RS18830
AC241_RS18830	SM00481	DNA polymerase alpha chain like domain
AC241_RS18840	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AC241_RS18885	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18885	SM01086	C-terminal, D2-small domain, of ClpB protein
AC241_RS18905	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AC241_RS18905	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AC241_RS18905	SM00493	AC241_RS18905
AC241_RS18915	SM00881	CoA binding domain
AC241_RS18965	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18965	SM00962	SRP54-type protein, GTPase domain
AC241_RS18965	SM00963	SRP54-type protein, helical bundle domain
AC241_RS18975	SM00382	ATPases associated with a variety of cellular activities
AC241_RS18975	SM00962	SRP54-type protein, GTPase domain
AC241_RS18975	SM00963	SRP54-type protein, helical bundle domain
AC241_RS18980	SM00968	SMC proteins Flexible Hinge Domain
AC241_RS18985	SM00358	Double-stranded RNA binding motif
AC241_RS18985	SM00535	Ribonuclease III family
AC241_RS18995	SM00822	AC241_RS18995
AC241_RS19000	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AC241_RS19015	SM00487	DEAD-like helicases superfamily
AC241_RS19015	SM00490	helicase superfamily c-terminal domain
AC241_RS19020	SM01120	AC241_RS19020
AC241_RS19020	SM01121	AC241_RS19020
AC241_RS19040	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
AC241_RS19055	SM00220	Serine/Threonine protein kinases, catalytic domain
AC241_RS19055	SM00740	AC241_RS19055
AC241_RS19060	SM00331	Sigma factor PP2C-like phosphatases
AC241_RS19060	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AC241_RS19085	SM00487	DEAD-like helicases superfamily
AC241_RS19085	SM00490	helicase superfamily c-terminal domain
AC241_RS19095	SM01409	AC241_RS19095
AC241_RS19100	SM00072	Guanylate kinase homologues.
AC241_RS19115	SM00831	Cation transporter/ATPase, N-terminus
AC241_RS19170	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AC241_RS19185	SM00851	MGS-like domain
AC241_RS19185	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AC241_RS19185	SM01209	AC241_RS19185
AC241_RS19190	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AC241_RS19215	SM00363	S4 RNA-binding domain
AC241_RS19240	SM00363	S4 RNA-binding domain
AC241_RS19285	SM00864	Tubulin/FtsZ family, GTPase domain
AC241_RS19285	SM00865	Tubulin/FtsZ family, C-terminal domain
AC241_RS19290	SM00842	Cell division protein FtsA
AC241_RS19330	SM00740	AC241_RS19330
AC241_RS19335	SM00740	AC241_RS19335
AC241_RS19365	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
AC241_RS19395	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AC241_RS19435	SM00855	Phosphoglycerate mutase family
AC241_RS19500	SM00878	Biotin carboxylase C-terminal domain
AC241_RS19520	SM00670	Large family of predicted nucleotide-binding domains
AC241_RS19545	SM00838	Elongation factor G C-terminus
AC241_RS19625	SM00861	Transketolase, pyrimidine binding domain
AC241_RS19655	SM00849	Metallo-beta-lactamase superfamily
AC241_RS19720	SM00052	Putative diguanylate phosphodiesterase
AC241_RS19810	SM00387	Histidine kinase-like ATPases
AC241_RS19810	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS19825	SM00354	helix_turn _helix lactose operon repressor
AC241_RS19845	SM00642	Alpha-amylase domain
AC241_RS19850	SM00642	Alpha-amylase domain
AC241_RS19855	SM00382	ATPases associated with a variety of cellular activities
AC241_RS19890	SM00382	ATPases associated with a variety of cellular activities
AC241_RS19975	SM01007	Class II Aldolase and Adducin N-terminal domain
AC241_RS20005	SM00267	diguanylate cyclase
AC241_RS20040	SM01061	CAT RNA binding domain
AC241_RS20050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS20050	SM00866	AC241_RS20050
AC241_RS20065	SM00849	Metallo-beta-lactamase superfamily
AC241_RS20165	SM00387	Histidine kinase-like ATPases
AC241_RS20175	SM00936	Penicillin-binding protein 5, C-terminal domain 
AC241_RS20180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS20185	SM00382	ATPases associated with a variety of cellular activities
AC241_RS20205	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS20225	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AC241_RS20320	SM00354	helix_turn _helix lactose operon repressor
AC241_RS20340	SM00704	CDGSH-type zinc finger. Function unknown.
AC241_RS20370	SM00729	Elongator protein 3, MiaB family, Radical SAM
AC241_RS20370	SM00876	Biotin and Thiamin Synthesis associated domain
AC241_RS20420	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS20455	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AC241_RS20470	SM00849	Metallo-beta-lactamase superfamily
AC241_RS20490	SM00849	Metallo-beta-lactamase superfamily
AC241_RS20505	SM00831	Cation transporter/ATPase, N-terminus
AC241_RS20555	SM00382	ATPases associated with a variety of cellular activities
AC241_RS20565	SM00062	Bacterial periplasmic substrate-binding proteins
AC241_RS20565	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AC241_RS20610	SM00861	Transketolase, pyrimidine binding domain
AC241_RS20630	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AC241_RS20645	SM00091	PAS domain
AC241_RS20645	SM00382	ATPases associated with a variety of cellular activities
AC241_RS20670	SM00448	cheY-homologous receiver domain
AC241_RS20680	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AC241_RS20695	SM00363	S4 RNA-binding domain
AC241_RS20700	SM00861	Transketolase, pyrimidine binding domain
AC241_RS20735	SM00878	Biotin carboxylase C-terminal domain
AC241_RS20785	SM00382	ATPases associated with a variety of cellular activities
AC241_RS20805	SM00841	Elongation factor P, C-terminal
AC241_RS20805	SM01185	AC241_RS20805
AC241_RS20840	SM00529	Helix-turn-helix diphteria tox regulatory element
AC241_RS20870	SM00450	Rhodanese Homology Domain
AC241_RS20880	SM00354	helix_turn _helix lactose operon repressor
AC241_RS20930	SM00382	ATPases associated with a variety of cellular activities
AC241_RS20935	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS20965	SM00487	DEAD-like helicases superfamily
AC241_RS20965	SM00490	helicase superfamily c-terminal domain
AC241_RS21000	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
AC241_RS21035	SM00382	ATPases associated with a variety of cellular activities
AC241_RS21100	SM01018	B12 binding domain
AC241_RS21125	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS21135	SM00849	Metallo-beta-lactamase superfamily
AC241_RS21175	SM00382	ATPases associated with a variety of cellular activities
AC241_RS21240	SM00382	ATPases associated with a variety of cellular activities
AC241_RS21255	SM00518	AP endonuclease family 2
AC241_RS21260	SM00487	DEAD-like helicases superfamily
AC241_RS21260	SM00490	helicase superfamily c-terminal domain
AC241_RS21295	SM00400	zinc finger
AC241_RS21295	SM00493	AC241_RS21295
AC241_RS21295	SM00766	DNA primase DnaG DnaB-binding
AC241_RS21310	SM00116	Domain in cystathionine beta-synthase and other proteins.
AC241_RS21345	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AC241_RS21380	SM00729	Elongator protein 3, MiaB family, Radical SAM
AC241_RS21395	SM00271	DnaJ molecular chaperone homology domain
AC241_RS21415	SM00729	Elongator protein 3, MiaB family, Radical SAM
AC241_RS21425	SM00838	Elongation factor G C-terminus
AC241_RS21455	SM00849	Metallo-beta-lactamase superfamily
AC241_RS21465	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AC241_RS21485	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AC241_RS21495	SM01103	AC241_RS21495
AC241_RS21550	SM00954	Region found in RelA / SpoT proteins
AC241_RS21560	SM00098	Alkaline phosphatase homologues
AC241_RS21585	SM00855	Phosphoglycerate mutase family
AC241_RS21630	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS21655	SM00382	ATPases associated with a variety of cellular activities
AC241_RS21760	SM00732	Likely ribonuclease with RNase H fold.
AC241_RS21770	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AC241_RS21805	SM00028	Tetratricopeptide repeats
AC241_RS21825	SM00382	ATPases associated with a variety of cellular activities
AC241_RS21870	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AC241_RS21870	SM00954	Region found in RelA / SpoT proteins
AC241_RS21915	SM01323	AC241_RS21915
AC241_RS21935	SM00382	ATPases associated with a variety of cellular activities
AC241_RS21940	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AC241_RS21965	SM00257	Lysin motif
AC241_RS22015	SM00382	ATPases associated with a variety of cellular activities
AC241_RS22020	SM00387	Histidine kinase-like ATPases
AC241_RS22025	SM00448	cheY-homologous receiver domain
AC241_RS22025	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS22035	SM01317	AC241_RS22035
AC241_RS22125	SM00257	Lysin motif
AC241_RS22135	SM01004	Delta-aminolevulinic acid dehydratase
AC241_RS22160	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS22175	SM00382	ATPases associated with a variety of cellular activities
AC241_RS22175	SM00464	Found in ATP-dependent protease La (LON)
AC241_RS22180	SM00382	ATPases associated with a variety of cellular activities
AC241_RS22185	SM00382	ATPases associated with a variety of cellular activities
AC241_RS22185	SM00994	ClpX C4-type zinc finger
AC241_RS22185	SM01086	C-terminal, D2-small domain, of ClpB protein
AC241_RS22245	SM00909	Sporulation and spore germination
AC241_RS22275	SM00421	helix_turn_helix, Lux Regulon
AC241_RS22295	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS22320	SM00382	ATPases associated with a variety of cellular activities
AC241_RS22370	SM00465	GIY-YIG type nucleases (URI domain)
AC241_RS22380	SM00893	Electron transfer flavoprotein domain
AC241_RS22385	SM00893	Electron transfer flavoprotein domain
AC241_RS22455	SM00382	ATPases associated with a variety of cellular activities
AC241_RS22460	SM00387	Histidine kinase-like ATPases
AC241_RS22460	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS22465	SM00448	cheY-homologous receiver domain
AC241_RS22465	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS22480	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AC241_RS22495	SM00382	ATPases associated with a variety of cellular activities
AC241_RS22510	SM00725	NEAr Transporter domain
AC241_RS22515	SM00725	NEAr Transporter domain
AC241_RS22520	SM00725	NEAr Transporter domain
AC241_RS22530	SM00363	S4 RNA-binding domain
AC241_RS22540	SM00463	Small MutS-related domain
AC241_RS22540	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AC241_RS22540	SM00534	ATPase domain of DNA mismatch repair MUTS family
AC241_RS22545	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AC241_RS22545	SM00481	DNA polymerase alpha chain like domain
AC241_RS22545	SM00483	DNA polymerase X family
AC241_RS22585	SM00873	B3/4 domain
AC241_RS22585	SM00874	tRNA synthetase B5 domain
AC241_RS22585	SM00896	Ferredoxin-fold anticodon binding domain
AC241_RS22595	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AC241_RS22660	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AC241_RS22675	SM00382	ATPases associated with a variety of cellular activities
AC241_RS22695	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AC241_RS22710	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AC241_RS22710	SM01232	AC241_RS22710
AC241_RS22715	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AC241_RS22715	SM00474	3'-5' exonuclease
AC241_RS22715	SM00475	5'-3' exonuclease
AC241_RS22715	SM00482	DNA polymerase A domain
AC241_RS22720	SM00091	PAS domain
AC241_RS22720	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS22720	SM00387	Histidine kinase-like ATPases
AC241_RS22720	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS22725	SM00448	cheY-homologous receiver domain
AC241_RS22725	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS22745	SM01329	AC241_RS22745
AC241_RS22795	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS22800	SM00919	Malic enzyme, NAD binding domain
AC241_RS22800	SM01274	AC241_RS22800
AC241_RS22805	SM00481	DNA polymerase alpha chain like domain
AC241_RS22835	SM00116	Domain in cystathionine beta-synthase and other proteins.
AC241_RS22845	SM00849	Metallo-beta-lactamase superfamily
AC241_RS22895	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AC241_RS22895	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AC241_RS23015	SM00981	AC241_RS23015
AC241_RS23055	SM00363	S4 RNA-binding domain
AC241_RS23055	SM01390	AC241_RS23055
AC241_RS23070	SM00363	S4 RNA-binding domain
AC241_RS23090	SM01266	AC241_RS23090
AC241_RS23105	SM00116	Domain in cystathionine beta-synthase and other proteins.
AC241_RS23125	SM00448	cheY-homologous receiver domain
AC241_RS23125	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS23130	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS23130	SM00387	Histidine kinase-like ATPases
AC241_RS23130	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS23135	SM00248	ankyrin repeats
AC241_RS23170	SM00354	helix_turn _helix lactose operon repressor
AC241_RS23230	SM00422	helix_turn_helix, mercury resistance
AC241_RS23245	SM00382	ATPases associated with a variety of cellular activities
AC241_RS23245	SM00843	AC241_RS23245
AC241_RS23250	SM00646	AC241_RS23250
AC241_RS23290	SM00849	Metallo-beta-lactamase superfamily
AC241_RS23310	SM00642	Alpha-amylase domain
AC241_RS23330	SM00420	helix_turn_helix, Deoxyribose operon repressor
AC241_RS23335	SM00363	S4 RNA-binding domain
AC241_RS23355	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS23380	SM01058	CarD-like/TRCF domain
AC241_RS23415	SM00852	Probable molybdopterin binding domain
AC241_RS23430	SM00729	Elongator protein 3, MiaB family, Radical SAM
AC241_RS23450	SM00450	Rhodanese Homology Domain
AC241_RS23525	SM00382	ATPases associated with a variety of cellular activities
AC241_RS23545	SM00729	Elongator protein 3, MiaB family, Radical SAM
AC241_RS23580	SM00014	Acid phosphatase homologues
AC241_RS23595	SM00852	Probable molybdopterin binding domain
AC241_RS23675	SM00387	Histidine kinase-like ATPases
AC241_RS23680	SM00387	Histidine kinase-like ATPases
AC241_RS23680	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS23685	SM01060	AC241_RS23685
AC241_RS23715	SM00382	ATPases associated with a variety of cellular activities
AC241_RS23780	SM01234	AC241_RS23780
AC241_RS23785	SM00947	Carbonic anhydrase
AC241_RS23855	SM00899	AC241_RS23855
AC241_RS23865	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS23865	SM00387	Histidine kinase-like ATPases
AC241_RS23865	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS23870	SM00448	cheY-homologous receiver domain
AC241_RS23870	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS23900	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AC241_RS23990	SM00382	ATPases associated with a variety of cellular activities
AC241_RS23995	SM00342	helix_turn_helix, arabinose operon control protein
AC241_RS23995	SM00871	Bacterial transcription activator, effector binding domain
AC241_RS24010	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AC241_RS24025	SM00448	cheY-homologous receiver domain
AC241_RS24025	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS24030	SM00387	Histidine kinase-like ATPases
AC241_RS24045	SM00382	ATPases associated with a variety of cellular activities
AC241_RS24065	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AC241_RS24065	SM00866	AC241_RS24065
AC241_RS24095	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS24095	SM00387	Histidine kinase-like ATPases
AC241_RS24095	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS24100	SM00448	cheY-homologous receiver domain
AC241_RS24100	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS24105	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AC241_RS24145	SM00357	Cold shock protein domain
AC241_RS24190	SM00642	Alpha-amylase domain
AC241_RS24375	SM00316	Ribosomal protein S1-like RNA-binding domain
AC241_RS24385	SM00344	helix_turn_helix ASNC type
AC241_RS24420	SM01298	AC241_RS24420
AC241_RS24425	SM00479	AC241_RS24425
AC241_RS24515	SM00871	Bacterial transcription activator, effector binding domain
AC241_RS24580	SM00382	ATPases associated with a variety of cellular activities
AC241_RS24620	SM00860	SMI1 / KNR4 family
AC241_RS24750	SM00422	helix_turn_helix, mercury resistance
AC241_RS24765	SM00855	Phosphoglycerate mutase family
AC241_RS24775	SM00729	Elongator protein 3, MiaB family, Radical SAM
AC241_RS24820	SM00382	ATPases associated with a variety of cellular activities
AC241_RS24840	SM00382	ATPases associated with a variety of cellular activities
AC241_RS24840	SM00930	AC241_RS24840
AC241_RS24855	SM00493	AC241_RS24855
AC241_RS24900	SM00849	Metallo-beta-lactamase superfamily
AC241_RS24950	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS24950	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS25020	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS25045	SM00448	cheY-homologous receiver domain
AC241_RS25045	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS25050	SM00387	Histidine kinase-like ATPases
AC241_RS25050	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS25075	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS25075	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS25080	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS25080	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS25100	SM00347	helix_turn_helix multiple antibiotic resistance protein
AC241_RS25200	SM01276	AC241_RS25200
AC241_RS25235	SM00363	S4 RNA-binding domain
AC241_RS25245	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
AC241_RS25250	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS25285	SM00382	ATPases associated with a variety of cellular activities
AC241_RS25325	SM00344	helix_turn_helix ASNC type
AC241_RS25355	SM00382	ATPases associated with a variety of cellular activities
AC241_RS25375	SM00448	cheY-homologous receiver domain
AC241_RS25375	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS25395	SM00316	Ribosomal protein S1-like RNA-binding domain
AC241_RS25395	SM00357	Cold shock protein domain
AC241_RS25395	SM00955	AC241_RS25395
AC241_RS25425	SM01192	AC241_RS25425
AC241_RS25425	SM01193	AC241_RS25425
AC241_RS25445	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AC241_RS25470	SM00382	ATPases associated with a variety of cellular activities
AC241_RS25475	SM00387	Histidine kinase-like ATPases
AC241_RS25480	SM00421	helix_turn_helix, Lux Regulon
AC241_RS25480	SM00448	cheY-homologous receiver domain
AC241_RS25570	SM00028	Tetratricopeptide repeats
AC241_RS25610	SM00487	DEAD-like helicases superfamily
AC241_RS25610	SM00490	helicase superfamily c-terminal domain
AC241_RS25625	SM00422	helix_turn_helix, mercury resistance
AC241_RS25650	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS25665	SM00422	helix_turn_helix, mercury resistance
AC241_RS25675	SM00382	ATPases associated with a variety of cellular activities
AC241_RS25685	SM00382	ATPases associated with a variety of cellular activities
AC241_RS25695	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AC241_RS25695	SM00245	tail specific protease
AC241_RS25705	SM00382	ATPases associated with a variety of cellular activities
AC241_RS25720	SM00937	AC241_RS25720
AC241_RS25725	SM00957	SecA DEAD-like domain
AC241_RS25725	SM00958	SecA preprotein cross-linking domain
AC241_RS25735	SM00357	Cold shock protein domain
AC241_RS25745	SM00487	DEAD-like helicases superfamily
AC241_RS25745	SM00490	helicase superfamily c-terminal domain
AC241_RS25780	SM00984	UDP binding domain
AC241_RS25795	SM00382	ATPases associated with a variety of cellular activities
AC241_RS25800	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
AC241_RS25960	SM00287	Bacterial SH3 domain homologues
AC241_RS25990	SM00287	Bacterial SH3 domain homologues
AC241_RS26020	SM00487	DEAD-like helicases superfamily
AC241_RS26020	SM00490	helicase superfamily c-terminal domain
AC241_RS26075	SM00382	ATPases associated with a variety of cellular activities
AC241_RS26100	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS26100	SM00387	Histidine kinase-like ATPases
AC241_RS26100	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS26105	SM00448	cheY-homologous receiver domain
AC241_RS26105	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS26125	SM00984	UDP binding domain
AC241_RS26220	SM00382	ATPases associated with a variety of cellular activities
AC241_RS26225	SM00850	LytTr DNA-binding domain
AC241_RS26305	SM00052	Putative diguanylate phosphodiesterase
AC241_RS26305	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AC241_RS26305	SM00091	PAS domain
AC241_RS26305	SM00267	diguanylate cyclase
AC241_RS26325	SM00382	ATPases associated with a variety of cellular activities
AC241_RS26395	SM00226	Low molecular weight phosphatase family
AC241_RS26420	SM00903	Flavin reductase like domain
AC241_RS26460	SM00937	AC241_RS26460
AC241_RS26475	SM00357	Cold shock protein domain
AC241_RS26475	SM00382	ATPases associated with a variety of cellular activities
AC241_RS26475	SM00959	Rho termination factor, N-terminal domain
AC241_RS26495	SM00448	cheY-homologous receiver domain
AC241_RS26545	SM00155	Phospholipase D. Active site motifs.
AC241_RS26555	SM00052	Putative diguanylate phosphodiesterase
AC241_RS26555	SM00267	diguanylate cyclase
AC241_RS26565	SM00530	Helix-turn-helix XRE-family like proteins 
AC241_RS26575	SM00421	helix_turn_helix, Lux Regulon
AC241_RS26575	SM00448	cheY-homologous receiver domain
AC241_RS26590	SM00382	ATPases associated with a variety of cellular activities
AC241_RS26630	SM00836	DALR anticodon binding domain
AC241_RS26630	SM01016	Arginyl tRNA synthetase N terminal dom
AC241_RS26675	SM00422	helix_turn_helix, mercury resistance
AC241_RS26705	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AC241_RS26715	SM00382	ATPases associated with a variety of cellular activities
AC241_RS26755	SM00936	Penicillin-binding protein 5, C-terminal domain 
AC241_RS26800	SM00986	Uracil DNA glycosylase superfamily
AC241_RS26800	SM00987	UreE urease accessory protein, C-terminal domain 
AC241_RS26810	SM00382	ATPases associated with a variety of cellular activities
AC241_RS26820	SM00354	helix_turn _helix lactose operon repressor
AC241_RS26855	SM00100	Cyclic nucleotide-monophosphate binding domain
AC241_RS26865	SM00421	helix_turn_helix, Lux Regulon
AC241_RS26865	SM00448	cheY-homologous receiver domain
AC241_RS26870	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AC241_RS26880	SM00267	diguanylate cyclase
AC241_RS26895	SM00448	cheY-homologous receiver domain
AC241_RS26895	SM00850	LytTr DNA-binding domain
AC241_RS26925	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AC241_RS26985	SM00382	ATPases associated with a variety of cellular activities
AC241_RS27030	SM00448	cheY-homologous receiver domain
AC241_RS27030	SM00850	LytTr DNA-binding domain
AC241_RS27035	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AC241_RS27035	SM00387	Histidine kinase-like ATPases
AC241_RS27090	SM00487	DEAD-like helicases superfamily
AC241_RS27090	SM00490	helicase superfamily c-terminal domain
AC241_RS27095	SM01240	AC241_RS27095
AC241_RS27110	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AC241_RS27110	SM00387	Histidine kinase-like ATPases
AC241_RS27110	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS27125	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AC241_RS27130	SM00849	Metallo-beta-lactamase superfamily
AC241_RS27145	SM00091	PAS domain
AC241_RS27145	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AC241_RS27145	SM00387	Histidine kinase-like ATPases
AC241_RS27145	SM00388	His Kinase A (phosphoacceptor) domain
AC241_RS27150	SM00448	cheY-homologous receiver domain
AC241_RS27150	SM00862	Transcriptional regulatory protein, C terminal
AC241_RS27175	SM00788	Adenylosuccinate synthetase
AC241_RS27190	SM00267	diguanylate cyclase
AC241_RS27235	SM00470	ParB-like nuclease domain
AC241_RS27245	SM00470	ParB-like nuclease domain
AC241_RS27255	SM01228	AC241_RS27255
AC241_RS27265	SM00393	Putative single-stranded nucleic acids-binding domain
AC241_RS27265	SM01245	AC241_RS27265
AC241_RS27330	SM01240	AC241_RS27330
AC241_RS27560	SM00977	TilS substrate C-terminal domain
AC241_RS29045	SM00642	Alpha-amylase domain
AC241_RS30625	SM01005	Alanine racemase, C-terminal domain
AC241_RS31085	SM00387	Histidine kinase-like ATPases
AC241_RS31085	SM00433	TopoisomeraseII
AC241_RS31135	SM00116	Domain in cystathionine beta-synthase and other proteins.
AC241_RS31135	SM01240	AC241_RS31135
AC241_RS31140	SM01240	AC241_RS31140
AC241_RS31190	SM00382	ATPases associated with a variety of cellular activities
AC241_RS32260	SM00382	ATPases associated with a variety of cellular activities
AC241_RS32260	SM00760	Bacterial dnaA protein helix-turn-helix domain
AC241_RS32405	SM00434	DNA Topoisomerase IV
