MC28_RS00080 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_RS00095 SM00287 Bacterial SH3 domain homologues MC28_RS00105 SM00382 ATPases associated with a variety of cellular activities MC28_RS00195 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS00220 SM00382 ATPases associated with a variety of cellular activities MC28_RS00310 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS00325 SM00450 Rhodanese Homology Domain MC28_RS00335 SM00450 Rhodanese Homology Domain MC28_RS00340 SM00450 Rhodanese Homology Domain MC28_RS00340 SM00849 Metallo-beta-lactamase superfamily MC28_RS00350 SM00450 Rhodanese Homology Domain MC28_RS00355 SM00450 Rhodanese Homology Domain MC28_RS00380 SM00829 Enoylreductase MC28_RS00390 SM00829 Enoylreductase MC28_RS00435 SM00287 Bacterial SH3 domain homologues MC28_RS00445 SM00382 ATPases associated with a variety of cellular activities MC28_RS00600 SM00344 helix_turn_helix ASNC type MC28_RS00615 SM00422 helix_turn_helix, mercury resistance MC28_RS00705 SM00382 ATPases associated with a variety of cellular activities MC28_RS00710 SM00382 ATPases associated with a variety of cellular activities MC28_RS00715 SM00062 Bacterial periplasmic substrate-binding proteins MC28_RS00715 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MC28_RS00725 SM00382 ATPases associated with a variety of cellular activities MC28_RS00795 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS00900 SM00382 ATPases associated with a variety of cellular activities MC28_RS00905 SM00382 ATPases associated with a variety of cellular activities MC28_RS00955 SM00091 PAS domain MC28_RS00955 SM00387 Histidine kinase-like ATPases MC28_RS00960 SM00448 cheY-homologous receiver domain MC28_RS00975 SM00487 DEAD-like helicases superfamily MC28_RS00975 SM00490 helicase superfamily c-terminal domain MC28_RS01070 SM01061 CAT RNA binding domain MC28_RS01085 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS01100 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS01120 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS01175 SM00448 cheY-homologous receiver domain MC28_RS01175 SM00862 Transcriptional regulatory protein, C terminal MC28_RS01180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS01180 SM00387 Histidine kinase-like ATPases MC28_RS01180 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS01190 SM00028 Tetratricopeptide repeats MC28_RS01250 SM00331 Sigma factor PP2C-like phosphatases MC28_RS01250 SM00448 cheY-homologous receiver domain MC28_RS01255 SM00138 Methyltransferase, chemotaxis proteins MC28_RS01260 SM00387 Histidine kinase-like ATPases MC28_RS01260 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS01260 SM00448 cheY-homologous receiver domain MC28_RS01285 SM00829 Enoylreductase MC28_RS01325 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_RS01370 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS01440 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS01455 SM00382 ATPases associated with a variety of cellular activities MC28_RS01530 SM00422 helix_turn_helix, mercury resistance MC28_RS01635 SM00354 helix_turn _helix lactose operon repressor MC28_RS01645 SM00849 Metallo-beta-lactamase superfamily MC28_RS01690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_RS01705 SM00342 helix_turn_helix, arabinose operon control protein MC28_RS01705 SM00871 Bacterial transcription activator, effector binding domain MC28_RS01715 SM00387 Histidine kinase-like ATPases MC28_RS01715 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS01720 SM00448 cheY-homologous receiver domain MC28_RS01720 SM00862 Transcriptional regulatory protein, C terminal MC28_RS01745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS01745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS01780 SM00357 Cold shock protein domain MC28_RS01890 SM01060 MC28_RS01890 MC28_RS01900 SM00642 Alpha-amylase domain MC28_RS01915 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_RS01965 SM00382 ATPases associated with a variety of cellular activities MC28_RS01965 SM01086 C-terminal, D2-small domain, of ClpB protein MC28_RS01995 SM00825 Beta-ketoacyl synthase MC28_RS02040 SM00382 ATPases associated with a variety of cellular activities MC28_RS02045 SM00382 ATPases associated with a variety of cellular activities MC28_RS02090 SM00155 Phospholipase D. Active site motifs. MC28_RS02115 SM01118 MC28_RS02115 MC28_RS02125 SM00954 Region found in RelA / SpoT proteins MC28_RS02280 SM00635 Bacterial Ig-like domain 2 MC28_RS02350 SM00047 Lysozyme subfamily 2 MC28_RS02375 SM01324 MC28_RS02375 MC28_RS02425 SM00861 Transketolase, pyrimidine binding domain MC28_RS02430 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS02465 SM00382 ATPases associated with a variety of cellular activities MC28_RS02570 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS02590 SM00382 ATPases associated with a variety of cellular activities MC28_RS02610 SM00014 Acid phosphatase homologues MC28_RS02660 SM00448 cheY-homologous receiver domain MC28_RS02660 SM00862 Transcriptional regulatory protein, C terminal MC28_RS02665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS02665 SM00387 Histidine kinase-like ATPases MC28_RS02665 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS02670 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS02670 SM00895 MC28_RS02670 MC28_RS02740 SM00822 MC28_RS02740 MC28_RS02775 SM00382 ATPases associated with a variety of cellular activities MC28_RS02800 SM00420 helix_turn_helix, Deoxyribose operon repressor MC28_RS02800 SM01134 MC28_RS02800 MC28_RS02815 SM01007 Class II Aldolase and Adducin N-terminal domain MC28_RS02835 SM00387 Histidine kinase-like ATPases MC28_RS02835 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS02840 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS02860 SM00387 Histidine kinase-like ATPases MC28_RS02860 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS02940 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MC28_RS02955 SM00091 PAS domain MC28_RS02955 SM00382 ATPases associated with a variety of cellular activities MC28_RS02970 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS02975 SM00382 ATPases associated with a variety of cellular activities MC28_RS02985 SM00382 ATPases associated with a variety of cellular activities MC28_RS03005 SM00344 helix_turn_helix ASNC type MC28_RS03130 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS03195 SM00917 LeuA allosteric (dimerisation) domain MC28_RS03200 SM01329 MC28_RS03200 MC28_RS03380 SM00387 Histidine kinase-like ATPases MC28_RS03385 SM00421 helix_turn_helix, Lux Regulon MC28_RS03385 SM00448 cheY-homologous receiver domain MC28_RS03475 SM00091 PAS domain MC28_RS03475 SM00387 Histidine kinase-like ATPases MC28_RS03475 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS03495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS03495 SM00387 Histidine kinase-like ATPases MC28_RS03495 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS03545 SM00363 S4 RNA-binding domain MC28_RS03565 SM00448 cheY-homologous receiver domain MC28_RS03565 SM00862 Transcriptional regulatory protein, C terminal MC28_RS03570 SM00091 PAS domain MC28_RS03570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS03570 SM00387 Histidine kinase-like ATPases MC28_RS03570 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS03580 SM00257 Lysin motif MC28_RS03605 SM00487 DEAD-like helicases superfamily MC28_RS03605 SM00490 helicase superfamily c-terminal domain MC28_RS03615 SM00257 Lysin motif MC28_RS03625 SM00422 helix_turn_helix, mercury resistance MC28_RS03635 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MC28_RS03650 SM00644 MC28_RS03650 MC28_RS03660 SM00870 MC28_RS03660 MC28_RS03670 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_RS03730 SM00411 bacterial (prokaryotic) histone like domain MC28_RS03755 SM00562 MC28_RS03755 MC28_RS03775 SM00028 Tetratricopeptide repeats MC28_RS03780 SM00914 MC28_RS03780 MC28_RS03825 SM00986 Uracil DNA glycosylase superfamily MC28_RS03825 SM00987 UreE urease accessory protein, C-terminal domain MC28_RS03845 SM00851 MGS-like domain MC28_RS03890 SM00479 MC28_RS03890 MC28_RS03890 SM00487 DEAD-like helicases superfamily MC28_RS03890 SM00491 MC28_RS03890 MC28_RS03915 SM00478 endonuclease III MC28_RS03925 SM00060 Fibronectin type 3 domain MC28_RS03975 SM00981 MC28_RS03975 MC28_RS04070 SM00491 MC28_RS04070 MC28_RS04130 SM00450 Rhodanese Homology Domain MC28_RS04170 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs MC28_RS04170 SM00475 5'-3' exonuclease MC28_RS04235 SM00357 Cold shock protein domain MC28_RS04285 SM00422 helix_turn_helix, mercury resistance MC28_RS04285 SM00871 Bacterial transcription activator, effector binding domain MC28_RS04370 SM00448 cheY-homologous receiver domain MC28_RS04375 SM00073 Histidine Phosphotransfer domain MC28_RS04375 SM00260 Two component signalling adaptor domain MC28_RS04375 SM00387 Histidine kinase-like ATPases MC28_RS04375 SM01231 MC28_RS04375 MC28_RS04395 SM00138 Methyltransferase, chemotaxis proteins MC28_RS04470 SM00382 ATPases associated with a variety of cellular activities MC28_RS04505 SM00260 Two component signalling adaptor domain MC28_RS04505 SM00448 cheY-homologous receiver domain MC28_RS04575 SM00382 ATPases associated with a variety of cellular activities MC28_RS04575 SM00962 SRP54-type protein, GTPase domain MC28_RS04630 SM00028 Tetratricopeptide repeats MC28_RS04630 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS04650 SM00382 ATPases associated with a variety of cellular activities MC28_RS04665 SM00849 Metallo-beta-lactamase superfamily MC28_RS04665 SM01027 Beta-Casp domain MC28_RS04685 SM00835 Cupin MC28_RS04695 SM00855 Phosphoglycerate mutase family MC28_RS04715 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS04755 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS04755 SM00895 MC28_RS04755 MC28_RS04770 SM00833 Cobalamin synthesis protein cobW C-terminal domain MC28_RS04795 SM00422 helix_turn_helix, mercury resistance MC28_RS04860 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS04895 SM00421 helix_turn_helix, Lux Regulon MC28_RS04895 SM00448 cheY-homologous receiver domain MC28_RS04905 SM00382 ATPases associated with a variety of cellular activities MC28_RS04920 SM00155 Phospholipase D. Active site motifs. MC28_RS04940 SM00919 Malic enzyme, NAD binding domain MC28_RS04940 SM01274 MC28_RS04940 MC28_RS04945 SM00387 Histidine kinase-like ATPases MC28_RS04950 SM00448 cheY-homologous receiver domain MC28_RS04955 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS04965 SM00487 DEAD-like helicases superfamily MC28_RS04965 SM00490 helicase superfamily c-terminal domain MC28_RS04980 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS05150 SM00854 Bacterial capsule synthesis protein PGA_cap MC28_RS05210 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS05220 SM00448 cheY-homologous receiver domain MC28_RS05220 SM00862 Transcriptional regulatory protein, C terminal MC28_RS05225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS05225 SM00387 Histidine kinase-like ATPases MC28_RS05225 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS05240 SM00450 Rhodanese Homology Domain MC28_RS05290 SM01133 MC28_RS05290 MC28_RS05300 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain MC28_RS05350 SM01011 Aminopeptidase P, N-terminal domain MC28_RS05360 SM00287 Bacterial SH3 domain homologues MC28_RS05395 SM00460 Transglutaminase/protease-like homologues MC28_RS05420 SM00382 ATPases associated with a variety of cellular activities MC28_RS05430 SM00448 cheY-homologous receiver domain MC28_RS05430 SM00862 Transcriptional regulatory protein, C terminal MC28_RS05435 SM00387 Histidine kinase-like ATPases MC28_RS05450 SM00770 Zinc dependent phospholipase C (alpha toxin) MC28_RS05465 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_RS05465 SM00924 MgtE intracellular N domain MC28_RS05500 SM00421 helix_turn_helix, Lux Regulon MC28_RS05500 SM00448 cheY-homologous receiver domain MC28_RS05520 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MC28_RS05520 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MC28_RS05520 SM00493 MC28_RS05520 MC28_RS05625 SM00833 Cobalamin synthesis protein cobW C-terminal domain MC28_RS05635 SM00382 ATPases associated with a variety of cellular activities MC28_RS05640 SM00382 ATPases associated with a variety of cellular activities MC28_RS05675 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS05695 SM00382 ATPases associated with a variety of cellular activities MC28_RS05700 SM00382 ATPases associated with a variety of cellular activities MC28_RS05740 SM00287 Bacterial SH3 domain homologues MC28_RS05750 SM00382 ATPases associated with a variety of cellular activities MC28_RS05755 SM00448 cheY-homologous receiver domain MC28_RS05755 SM00862 Transcriptional regulatory protein, C terminal MC28_RS05760 SM00387 Histidine kinase-like ATPases MC28_RS05760 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS05840 SM00448 cheY-homologous receiver domain MC28_RS05840 SM00862 Transcriptional regulatory protein, C terminal MC28_RS05845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS05845 SM00387 Histidine kinase-like ATPases MC28_RS05845 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS05915 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS05940 SM00460 Transglutaminase/protease-like homologues MC28_RS06040 SM00857 Resolvase, N terminal domain MC28_RS06055 SM00966 SpoVT / AbrB like domain MC28_RS06065 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS06095 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS06095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS06155 SM00833 Cobalamin synthesis protein cobW C-terminal domain MC28_RS06205 SM00855 Phosphoglycerate mutase family MC28_RS06255 SM00155 Phospholipase D. Active site motifs. MC28_RS06280 SM01091 Transporter associated domain MC28_RS06360 SM00244 prohibitin homologues MC28_RS06370 SM00855 Phosphoglycerate mutase family MC28_RS06380 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS06395 SM01005 Alanine racemase, C-terminal domain MC28_RS06420 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS06570 SM00487 DEAD-like helicases superfamily MC28_RS06570 SM00490 helicase superfamily c-terminal domain MC28_RS06585 SM00829 Enoylreductase MC28_RS06610 SM00849 Metallo-beta-lactamase superfamily MC28_RS06625 SM00460 Transglutaminase/protease-like homologues MC28_RS06640 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MC28_RS06660 SM00100 Cyclic nucleotide-monophosphate binding domain MC28_RS06660 SM00419 helix_turn_helix, cAMP Regulatory protein MC28_RS06665 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS06675 SM00852 Probable molybdopterin binding domain MC28_RS06815 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_RS06820 SM00382 ATPases associated with a variety of cellular activities MC28_RS06850 SM00567 E-Z type HEAT repeats MC28_RS06850 SM00932 Scaffold protein Nfu/NifU N terminal MC28_RS06870 SM00836 DALR anticodon binding domain MC28_RS06870 SM01016 Arginyl tRNA synthetase N terminal dom MC28_RS06890 SM00028 Tetratricopeptide repeats MC28_RS07030 SM00563 Phosphate acyltransferases MC28_RS07090 SM00287 Bacterial SH3 domain homologues MC28_RS07090 SM00646 MC28_RS07090 MC28_RS07130 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MC28_RS07130 SM00387 Histidine kinase-like ATPases MC28_RS07135 SM00421 helix_turn_helix, Lux Regulon MC28_RS07135 SM00448 cheY-homologous receiver domain MC28_RS07145 SM00829 Enoylreductase MC28_RS07170 SM01350 MC28_RS07170 MC28_RS07200 SM00382 ATPases associated with a variety of cellular activities MC28_RS07240 SM01091 Transporter associated domain MC28_RS07255 SM00387 Histidine kinase-like ATPases MC28_RS07255 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS07270 SM00882 Coenzyme A transferase MC28_RS07275 SM00882 Coenzyme A transferase MC28_RS07290 SM00382 ATPases associated with a variety of cellular activities MC28_RS07325 SM00219 Tyrosine kinase, catalytic domain MC28_RS07335 SM00014 Acid phosphatase homologues MC28_RS07385 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS07390 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS07475 SM00901 MC28_RS07475 MC28_RS07570 SM00644 MC28_RS07570 MC28_RS07610 SM00646 MC28_RS07610 MC28_RS07790 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS07830 SM00823 Phosphopantetheine attachment site MC28_RS07830 SM00824 Thioesterase MC28_RS07835 SM00923 MbtH-like protein MC28_RS07855 SM00411 bacterial (prokaryotic) histone like domain MC28_RS07890 SM00363 S4 RNA-binding domain MC28_RS07895 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MC28_RS07900 SM00382 ATPases associated with a variety of cellular activities MC28_RS07935 SM00849 Metallo-beta-lactamase superfamily MC28_RS07960 SM00100 Cyclic nucleotide-monophosphate binding domain MC28_RS07970 SM00342 helix_turn_helix, arabinose operon control protein MC28_RS08005 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MC28_RS08005 SM00091 PAS domain MC28_RS08005 SM00387 Histidine kinase-like ATPases MC28_RS08005 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS08015 SM00448 cheY-homologous receiver domain MC28_RS08015 SM00862 Transcriptional regulatory protein, C terminal MC28_RS08020 SM00387 Histidine kinase-like ATPases MC28_RS08020 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS08035 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS08045 SM00849 Metallo-beta-lactamase superfamily MC28_RS08060 SM01059 Chloramphenicol acetyltransferase MC28_RS08080 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS08115 SM00357 Cold shock protein domain MC28_RS08140 SM00859 Semialdehyde dehydrogenase, NAD binding domain MC28_RS08170 SM00382 ATPases associated with a variety of cellular activities MC28_RS08175 SM00382 ATPases associated with a variety of cellular activities MC28_RS08190 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS08215 SM00835 Cupin MC28_RS08285 SM01207 MC28_RS08285 MC28_RS08305 SM00849 Metallo-beta-lactamase superfamily MC28_RS08320 SM00487 DEAD-like helicases superfamily MC28_RS08320 SM00490 helicase superfamily c-terminal domain MC28_RS08345 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS08350 SM00855 Phosphoglycerate mutase family MC28_RS08395 SM00421 helix_turn_helix, Lux Regulon MC28_RS08400 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS08405 SM00966 SpoVT / AbrB like domain MC28_RS08425 SM00936 Penicillin-binding protein 5, C-terminal domain MC28_RS08485 SM01276 MC28_RS08485 MC28_RS08510 SM00060 Fibronectin type 3 domain MC28_RS08515 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_RS08535 SM00382 ATPases associated with a variety of cellular activities MC28_RS08560 SM00878 Biotin carboxylase C-terminal domain MC28_RS08650 SM00387 Histidine kinase-like ATPases MC28_RS08650 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS08655 SM00448 cheY-homologous receiver domain MC28_RS08655 SM00862 Transcriptional regulatory protein, C terminal MC28_RS08695 SM00342 helix_turn_helix, arabinose operon control protein MC28_RS08725 SM00382 ATPases associated with a variety of cellular activities MC28_RS08745 SM00422 helix_turn_helix, mercury resistance MC28_RS08745 SM00871 Bacterial transcription activator, effector binding domain MC28_RS08780 SM00342 helix_turn_helix, arabinose operon control protein MC28_RS08795 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS08860 SM00448 cheY-homologous receiver domain MC28_RS08860 SM00862 Transcriptional regulatory protein, C terminal MC28_RS08865 SM00387 Histidine kinase-like ATPases MC28_RS08885 SM00382 ATPases associated with a variety of cellular activities MC28_RS08895 SM00382 ATPases associated with a variety of cellular activities MC28_RS08925 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS08930 SM01209 MC28_RS08930 MC28_RS08965 SM00645 Papain family cysteine protease MC28_RS09100 SM00091 PAS domain MC28_RS09100 SM00387 Histidine kinase-like ATPases MC28_RS09100 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS09130 SM00382 ATPases associated with a variety of cellular activities MC28_RS09140 SM00387 Histidine kinase-like ATPases MC28_RS09140 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS09155 SM00829 Enoylreductase MC28_RS09160 SM00014 Acid phosphatase homologues MC28_RS09165 SM00740 MC28_RS09165 MC28_RS09200 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS09220 SM00422 helix_turn_helix, mercury resistance MC28_RS09260 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS09320 SM00480 DNA polymerase III beta subunit MC28_RS09415 SM00465 GIY-YIG type nucleases (URI domain) MC28_RS09475 SM00448 cheY-homologous receiver domain MC28_RS09475 SM00862 Transcriptional regulatory protein, C terminal MC28_RS09480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS09480 SM00387 Histidine kinase-like ATPases MC28_RS09480 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS09510 SM00382 ATPases associated with a variety of cellular activities MC28_RS09535 SM00642 Alpha-amylase domain MC28_RS09565 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS09570 SM00829 Enoylreductase MC28_RS09665 SM00382 ATPases associated with a variety of cellular activities MC28_RS09685 SM00420 helix_turn_helix, Deoxyribose operon repressor MC28_RS09685 SM01134 MC28_RS09685 MC28_RS09715 SM00861 Transketolase, pyrimidine binding domain MC28_RS09765 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_RS09765 SM00382 ATPases associated with a variety of cellular activities MC28_RS09810 SM00060 Fibronectin type 3 domain MC28_RS09910 SM00341 Helicase and RNase D C-terminal MC28_RS09910 SM00487 DEAD-like helicases superfamily MC28_RS09910 SM00490 helicase superfamily c-terminal domain MC28_RS09910 SM00956 MC28_RS09910 MC28_RS09945 SM01131 MC28_RS09945 MC28_RS09965 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_RS09990 SM01130 MC28_RS09990 MC28_RS10010 SM00091 PAS domain MC28_RS10010 SM00382 ATPases associated with a variety of cellular activities MC28_RS10085 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MC28_RS10130 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain MC28_RS10135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS10135 SM00387 Histidine kinase-like ATPases MC28_RS10135 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS10140 SM00448 cheY-homologous receiver domain MC28_RS10140 SM00862 Transcriptional regulatory protein, C terminal MC28_RS10345 SM00382 ATPases associated with a variety of cellular activities MC28_RS10350 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS10410 SM00062 Bacterial periplasmic substrate-binding proteins MC28_RS10415 SM00382 ATPases associated with a variety of cellular activities MC28_RS10430 SM00028 Tetratricopeptide repeats MC28_RS10510 SM00849 Metallo-beta-lactamase superfamily MC28_RS10550 SM00382 ATPases associated with a variety of cellular activities MC28_RS10590 SM00830 Chorismate mutase type II MC28_RS10625 SM00860 SMI1 / KNR4 family MC28_RS10630 SM00287 Bacterial SH3 domain homologues MC28_RS10685 SM00382 ATPases associated with a variety of cellular activities MC28_RS10705 SM01133 MC28_RS10705 MC28_RS10740 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS10750 SM01217 MC28_RS10750 MC28_RS10755 SM00342 helix_turn_helix, arabinose operon control protein MC28_RS10770 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MC28_RS10785 SM00346 helix_turn_helix isocitrate lyase regulation MC28_RS10810 SM00098 Alkaline phosphatase homologues MC28_RS10820 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS10895 SM01060 MC28_RS10895 MC28_RS10985 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS10990 SM00889 Elongation factor G, domain IV MC28_RS11025 SM00342 helix_turn_helix, arabinose operon control protein MC28_RS11025 SM00871 Bacterial transcription activator, effector binding domain MC28_RS11050 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS11070 SM00387 Histidine kinase-like ATPases MC28_RS11070 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS11075 SM00448 cheY-homologous receiver domain MC28_RS11075 SM00862 Transcriptional regulatory protein, C terminal MC28_RS11190 SM00797 Allophanate hydrolase subunit 2 MC28_RS11195 SM00796 Allophanate hydrolase subunit 1 MC28_RS11200 SM00346 helix_turn_helix isocitrate lyase regulation MC28_RS11225 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS11260 SM00342 helix_turn_helix, arabinose operon control protein MC28_RS11305 SM00365 Leucine-rich repeat, SDS22-like subfamily MC28_RS11305 SM00369 Leucine-rich repeats, typical (most populated) subfamily MC28_RS11305 SM00725 NEAr Transporter domain MC28_RS11485 SM00226 Low molecular weight phosphatase family MC28_RS11500 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS11530 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS11565 SM00344 helix_turn_helix ASNC type MC28_RS11600 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS11675 SM00849 Metallo-beta-lactamase superfamily MC28_RS11730 SM00382 ATPases associated with a variety of cellular activities MC28_RS11745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS11745 SM00387 Histidine kinase-like ATPases MC28_RS11745 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS11750 SM00448 cheY-homologous receiver domain MC28_RS11750 SM00862 Transcriptional regulatory protein, C terminal MC28_RS11860 SM00860 SMI1 / KNR4 family MC28_RS11895 SM00854 Bacterial capsule synthesis protein PGA_cap MC28_RS11935 SM00422 helix_turn_helix, mercury resistance MC28_RS11960 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS11985 SM00382 ATPases associated with a variety of cellular activities MC28_RS11990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS11990 SM00387 Histidine kinase-like ATPases MC28_RS11990 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS11995 SM00448 cheY-homologous receiver domain MC28_RS11995 SM00862 Transcriptional regulatory protein, C terminal MC28_RS12055 SM00382 ATPases associated with a variety of cellular activities MC28_RS12175 SM00382 ATPases associated with a variety of cellular activities MC28_RS12190 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS12250 SM01266 MC28_RS12250 MC28_RS12305 SM00028 Tetratricopeptide repeats MC28_RS12325 SM01091 Transporter associated domain MC28_RS12330 SM00422 helix_turn_helix, mercury resistance MC28_RS12400 SM01350 MC28_RS12400 MC28_RS12405 SM00861 Transketolase, pyrimidine binding domain MC28_RS12420 SM00829 Enoylreductase MC28_RS12430 SM00829 Enoylreductase MC28_RS12450 SM01276 MC28_RS12450 MC28_RS12455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS12455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS12535 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS12545 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS12555 SM00914 MC28_RS12555 MC28_RS12585 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS12585 SM00866 MC28_RS12585 MC28_RS12635 SM00849 Metallo-beta-lactamase superfamily MC28_RS12700 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS12705 SM00636 MC28_RS12705 MC28_RS12745 SM00871 Bacterial transcription activator, effector binding domain MC28_RS12760 SM00382 ATPases associated with a variety of cellular activities MC28_RS12780 SM00849 Metallo-beta-lactamase superfamily MC28_RS12785 SM00641 Glycosyl hydrolases family 25 MC28_RS12850 SM00849 Metallo-beta-lactamase superfamily MC28_RS12855 SM00829 Enoylreductase MC28_RS12990 SM00829 Enoylreductase MC28_RS12995 SM00855 Phosphoglycerate mutase family MC28_RS13005 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MC28_RS13005 SM00534 ATPase domain of DNA mismatch repair MUTS family MC28_RS13010 SM00642 Alpha-amylase domain MC28_RS13035 SM00422 helix_turn_helix, mercury resistance MC28_RS13035 SM00871 Bacterial transcription activator, effector binding domain MC28_RS13105 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS13110 SM00829 Enoylreductase MC28_RS13120 SM00028 Tetratricopeptide repeats MC28_RS13160 SM00636 MC28_RS13160 MC28_RS13170 SM00052 Putative diguanylate phosphodiesterase MC28_RS13170 SM00091 PAS domain MC28_RS13170 SM00267 diguanylate cyclase MC28_RS13195 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS13220 SM00387 Histidine kinase-like ATPases MC28_RS13220 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS13225 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MC28_RS13265 SM00479 MC28_RS13265 MC28_RS13270 SM00357 Cold shock protein domain MC28_RS13295 SM01022 MC28_RS13295 MC28_RS13350 SM00822 MC28_RS13350 MC28_RS13405 SM00852 Probable molybdopterin binding domain MC28_RS13420 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS13440 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MC28_RS13440 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MC28_RS13545 SM00382 ATPases associated with a variety of cellular activities MC28_RS13560 SM00434 DNA Topoisomerase IV MC28_RS13565 SM00387 Histidine kinase-like ATPases MC28_RS13565 SM00433 TopoisomeraseII MC28_RS13570 SM00881 CoA binding domain MC28_RS13575 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_RS13580 SM00448 cheY-homologous receiver domain MC28_RS13580 SM00862 Transcriptional regulatory protein, C terminal MC28_RS13595 SM01207 MC28_RS13595 MC28_RS13610 SM00257 Lysin motif MC28_RS13610 SM00636 MC28_RS13610 MC28_RS13625 SM00479 MC28_RS13625 MC28_RS13640 SM00382 ATPases associated with a variety of cellular activities MC28_RS13685 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MC28_RS13720 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS13750 SM00644 MC28_RS13750 MC28_RS13750 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. MC28_RS13755 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MC28_RS13770 SM00091 PAS domain MC28_RS13770 SM00387 Histidine kinase-like ATPases MC28_RS13770 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS13795 SM01058 CarD-like/TRCF domain MC28_RS13875 SM00382 ATPases associated with a variety of cellular activities MC28_RS13940 SM00287 Bacterial SH3 domain homologues MC28_RS13940 SM00641 Glycosyl hydrolases family 25 MC28_RS13945 SM00382 ATPases associated with a variety of cellular activities MC28_RS13950 SM00382 ATPases associated with a variety of cellular activities MC28_RS13965 SM00861 Transketolase, pyrimidine binding domain MC28_RS13980 SM00382 ATPases associated with a variety of cellular activities MC28_RS13985 SM00062 Bacterial periplasmic substrate-binding proteins MC28_RS14000 SM00857 Resolvase, N terminal domain MC28_RS14025 SM00382 ATPases associated with a variety of cellular activities MC28_RS14145 SM01230 MC28_RS14145 MC28_RS14150 SM00422 helix_turn_helix, mercury resistance MC28_RS14175 SM00382 ATPases associated with a variety of cellular activities MC28_RS14225 SM00287 Bacterial SH3 domain homologues MC28_RS14240 SM00420 helix_turn_helix, Deoxyribose operon repressor MC28_RS14240 SM01134 MC28_RS14240 MC28_RS14270 SM00636 MC28_RS14270 MC28_RS14285 SM00411 bacterial (prokaryotic) histone like domain MC28_RS14315 SM00421 helix_turn_helix, Lux Regulon MC28_RS14330 SM00382 ATPases associated with a variety of cellular activities MC28_RS14355 SM00342 helix_turn_helix, arabinose operon control protein MC28_RS14365 SM00478 endonuclease III MC28_RS14395 SM00052 Putative diguanylate phosphodiesterase MC28_RS14395 SM00091 PAS domain MC28_RS14395 SM00267 diguanylate cyclase MC28_RS14445 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS14465 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS14465 SM00866 MC28_RS14465 MC28_RS14475 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_RS14485 SM00257 Lysin motif MC28_RS14510 SM00853 MutL C terminal dimerisation domain MC28_RS14510 SM01340 MC28_RS14510 MC28_RS14515 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MC28_RS14515 SM00534 ATPase domain of DNA mismatch repair MUTS family MC28_RS14530 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS14560 SM00322 K homology RNA-binding domain MC28_RS14560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_RS14580 SM00382 ATPases associated with a variety of cellular activities MC28_RS14585 SM00852 Probable molybdopterin binding domain MC28_RS14635 SM00382 ATPases associated with a variety of cellular activities MC28_RS14645 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS14645 SM00866 MC28_RS14645 MC28_RS14650 SM00382 ATPases associated with a variety of cellular activities MC28_RS14650 SM00843 MC28_RS14650 MC28_RS14665 SM00849 Metallo-beta-lactamase superfamily MC28_RS14670 SM01130 MC28_RS14670 MC28_RS14680 SM00859 Semialdehyde dehydrogenase, NAD binding domain MC28_RS14735 SM00644 MC28_RS14735 MC28_RS14825 SM00507 HNH nucleases MC28_RS14925 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS14930 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS14945 SM00857 Resolvase, N terminal domain MC28_RS14975 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_RS14975 SM00322 K homology RNA-binding domain MC28_RS14980 SM01387 MC28_RS14980 MC28_RS14985 SM00904 Riboflavin kinase MC28_RS15020 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_RS15020 SM00322 K homology RNA-binding domain MC28_RS15030 SM00479 MC28_RS15030 MC28_RS15030 SM00481 DNA polymerase alpha chain like domain MC28_RS15040 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_RS15085 SM00382 ATPases associated with a variety of cellular activities MC28_RS15085 SM01086 C-terminal, D2-small domain, of ClpB protein MC28_RS15105 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MC28_RS15105 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MC28_RS15105 SM00493 MC28_RS15105 MC28_RS15115 SM00881 CoA binding domain MC28_RS15165 SM00382 ATPases associated with a variety of cellular activities MC28_RS15165 SM00962 SRP54-type protein, GTPase domain MC28_RS15165 SM00963 SRP54-type protein, helical bundle domain MC28_RS15175 SM00382 ATPases associated with a variety of cellular activities MC28_RS15175 SM00962 SRP54-type protein, GTPase domain MC28_RS15175 SM00963 SRP54-type protein, helical bundle domain MC28_RS15180 SM00968 SMC proteins Flexible Hinge Domain MC28_RS15185 SM00358 Double-stranded RNA binding motif MC28_RS15185 SM00535 Ribonuclease III family MC28_RS15195 SM00822 MC28_RS15195 MC28_RS15200 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MC28_RS15215 SM00487 DEAD-like helicases superfamily MC28_RS15215 SM00490 helicase superfamily c-terminal domain MC28_RS15220 SM01120 MC28_RS15220 MC28_RS15220 SM01121 MC28_RS15220 MC28_RS15240 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain MC28_RS15255 SM00220 Serine/Threonine protein kinases, catalytic domain MC28_RS15255 SM00740 MC28_RS15255 MC28_RS15260 SM00331 Sigma factor PP2C-like phosphatases MC28_RS15260 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MC28_RS15285 SM00487 DEAD-like helicases superfamily MC28_RS15285 SM00490 helicase superfamily c-terminal domain MC28_RS15295 SM01409 MC28_RS15295 MC28_RS15300 SM00072 Guanylate kinase homologues. MC28_RS15315 SM00831 Cation transporter/ATPase, N-terminus MC28_RS15360 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family MC28_RS15375 SM00851 MGS-like domain MC28_RS15375 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MC28_RS15375 SM01209 MC28_RS15375 MC28_RS15380 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain MC28_RS15405 SM00363 S4 RNA-binding domain MC28_RS15430 SM00363 S4 RNA-binding domain MC28_RS15475 SM00864 Tubulin/FtsZ family, GTPase domain MC28_RS15475 SM00865 Tubulin/FtsZ family, C-terminal domain MC28_RS15480 SM00842 Cell division protein FtsA MC28_RS15520 SM00740 MC28_RS15520 MC28_RS15525 SM00740 MC28_RS15525 MC28_RS15555 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains MC28_RS15590 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS15715 SM00507 HNH nucleases MC28_RS15830 SM00966 SpoVT / AbrB like domain MC28_RS15850 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS15855 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS15875 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS15895 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_RS15935 SM00855 Phosphoglycerate mutase family MC28_RS16000 SM00878 Biotin carboxylase C-terminal domain MC28_RS16020 SM00670 Large family of predicted nucleotide-binding domains MC28_RS16045 SM00838 Elongation factor G C-terminus MC28_RS16135 SM00861 Transketolase, pyrimidine binding domain MC28_RS16165 SM00849 Metallo-beta-lactamase superfamily MC28_RS16235 SM00052 Putative diguanylate phosphodiesterase MC28_RS16320 SM00387 Histidine kinase-like ATPases MC28_RS16320 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS16335 SM00354 helix_turn _helix lactose operon repressor MC28_RS16355 SM00642 Alpha-amylase domain MC28_RS16360 SM00642 Alpha-amylase domain MC28_RS16365 SM00382 ATPases associated with a variety of cellular activities MC28_RS16400 SM00382 ATPases associated with a variety of cellular activities MC28_RS16480 SM01007 Class II Aldolase and Adducin N-terminal domain MC28_RS16510 SM00267 diguanylate cyclase MC28_RS16545 SM01061 CAT RNA binding domain MC28_RS16555 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS16555 SM00866 MC28_RS16555 MC28_RS16570 SM00849 Metallo-beta-lactamase superfamily MC28_RS16660 SM00387 Histidine kinase-like ATPases MC28_RS16670 SM00936 Penicillin-binding protein 5, C-terminal domain MC28_RS16675 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS16680 SM00382 ATPases associated with a variety of cellular activities MC28_RS16700 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS16720 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain MC28_RS16815 SM00354 helix_turn _helix lactose operon repressor MC28_RS16835 SM00704 CDGSH-type zinc finger. Function unknown. MC28_RS16865 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS16865 SM00876 Biotin and Thiamin Synthesis associated domain MC28_RS16915 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS16950 SM00859 Semialdehyde dehydrogenase, NAD binding domain MC28_RS16965 SM00849 Metallo-beta-lactamase superfamily MC28_RS16995 SM00849 Metallo-beta-lactamase superfamily MC28_RS17005 SM00831 Cation transporter/ATPase, N-terminus MC28_RS17045 SM00382 ATPases associated with a variety of cellular activities MC28_RS17055 SM00062 Bacterial periplasmic substrate-binding proteins MC28_RS17055 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MC28_RS17090 SM00861 Transketolase, pyrimidine binding domain MC28_RS17110 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MC28_RS17120 SM00091 PAS domain MC28_RS17120 SM00382 ATPases associated with a variety of cellular activities MC28_RS17150 SM00448 cheY-homologous receiver domain MC28_RS17155 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_RS17170 SM00363 S4 RNA-binding domain MC28_RS17175 SM00861 Transketolase, pyrimidine binding domain MC28_RS17210 SM00878 Biotin carboxylase C-terminal domain MC28_RS17260 SM00382 ATPases associated with a variety of cellular activities MC28_RS17280 SM00841 Elongation factor P, C-terminal MC28_RS17280 SM01185 MC28_RS17280 MC28_RS17315 SM00529 Helix-turn-helix diphteria tox regulatory element MC28_RS17345 SM00450 Rhodanese Homology Domain MC28_RS17355 SM00354 helix_turn _helix lactose operon repressor MC28_RS17400 SM00382 ATPases associated with a variety of cellular activities MC28_RS17405 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS17435 SM00487 DEAD-like helicases superfamily MC28_RS17435 SM00490 helicase superfamily c-terminal domain MC28_RS17470 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MC28_RS17505 SM00382 ATPases associated with a variety of cellular activities MC28_RS17560 SM01018 B12 binding domain MC28_RS17590 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS17600 SM00849 Metallo-beta-lactamase superfamily MC28_RS17640 SM00382 ATPases associated with a variety of cellular activities MC28_RS17705 SM00382 ATPases associated with a variety of cellular activities MC28_RS17720 SM00518 AP endonuclease family 2 MC28_RS17725 SM00487 DEAD-like helicases superfamily MC28_RS17725 SM00490 helicase superfamily c-terminal domain MC28_RS17760 SM00400 zinc finger MC28_RS17760 SM00493 MC28_RS17760 MC28_RS17760 SM00766 DNA primase DnaG DnaB-binding MC28_RS17775 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_RS17810 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_RS17840 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS17855 SM00271 DnaJ molecular chaperone homology domain MC28_RS17875 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS17885 SM00838 Elongation factor G C-terminus MC28_RS17915 SM00849 Metallo-beta-lactamase superfamily MC28_RS17925 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MC28_RS17945 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_RS17955 SM01103 MC28_RS17955 MC28_RS18010 SM00954 Region found in RelA / SpoT proteins MC28_RS18020 SM00098 Alkaline phosphatase homologues MC28_RS18045 SM00855 Phosphoglycerate mutase family MC28_RS18090 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS18115 SM00382 ATPases associated with a variety of cellular activities MC28_RS18210 SM00732 Likely ribonuclease with RNase H fold. MC28_RS18220 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MC28_RS18255 SM00028 Tetratricopeptide repeats MC28_RS18275 SM00382 ATPases associated with a variety of cellular activities MC28_RS18320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_RS18320 SM00954 Region found in RelA / SpoT proteins MC28_RS18365 SM01323 MC28_RS18365 MC28_RS18385 SM00382 ATPases associated with a variety of cellular activities MC28_RS18390 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MC28_RS18415 SM00257 Lysin motif MC28_RS18465 SM00382 ATPases associated with a variety of cellular activities MC28_RS18470 SM00387 Histidine kinase-like ATPases MC28_RS18475 SM00448 cheY-homologous receiver domain MC28_RS18475 SM00862 Transcriptional regulatory protein, C terminal MC28_RS18485 SM01317 MC28_RS18485 MC28_RS18575 SM00257 Lysin motif MC28_RS18585 SM01004 Delta-aminolevulinic acid dehydratase MC28_RS18610 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS18625 SM00382 ATPases associated with a variety of cellular activities MC28_RS18625 SM00464 Found in ATP-dependent protease La (LON) MC28_RS18630 SM00382 ATPases associated with a variety of cellular activities MC28_RS18635 SM00382 ATPases associated with a variety of cellular activities MC28_RS18635 SM00994 ClpX C4-type zinc finger MC28_RS18635 SM01086 C-terminal, D2-small domain, of ClpB protein MC28_RS18685 SM00909 Sporulation and spore germination MC28_RS18715 SM00421 helix_turn_helix, Lux Regulon MC28_RS18735 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS18760 SM00382 ATPases associated with a variety of cellular activities MC28_RS18810 SM00465 GIY-YIG type nucleases (URI domain) MC28_RS18820 SM00893 Electron transfer flavoprotein domain MC28_RS18825 SM00893 Electron transfer flavoprotein domain MC28_RS18895 SM00382 ATPases associated with a variety of cellular activities MC28_RS18900 SM00387 Histidine kinase-like ATPases MC28_RS18900 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS18905 SM00448 cheY-homologous receiver domain MC28_RS18905 SM00862 Transcriptional regulatory protein, C terminal MC28_RS18920 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MC28_RS18935 SM00382 ATPases associated with a variety of cellular activities MC28_RS18950 SM00725 NEAr Transporter domain MC28_RS18955 SM00725 NEAr Transporter domain MC28_RS18960 SM00725 NEAr Transporter domain MC28_RS18970 SM00363 S4 RNA-binding domain MC28_RS18975 SM00463 Small MutS-related domain MC28_RS18975 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MC28_RS18975 SM00534 ATPase domain of DNA mismatch repair MUTS family MC28_RS18980 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MC28_RS18980 SM00481 DNA polymerase alpha chain like domain MC28_RS18980 SM00483 DNA polymerase X family MC28_RS19010 SM00873 B3/4 domain MC28_RS19010 SM00874 tRNA synthetase B5 domain MC28_RS19010 SM00896 Ferredoxin-fold anticodon binding domain MC28_RS19020 SM00967 RNA 2'-O ribose methyltransferase substrate binding MC28_RS19030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_RS19085 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MC28_RS19095 SM00382 ATPases associated with a variety of cellular activities MC28_RS19115 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MC28_RS19130 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain MC28_RS19130 SM01232 MC28_RS19130 MC28_RS19135 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs MC28_RS19135 SM00474 3'-5' exonuclease MC28_RS19135 SM00475 5'-3' exonuclease MC28_RS19135 SM00482 DNA polymerase A domain MC28_RS19140 SM00091 PAS domain MC28_RS19140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS19140 SM00387 Histidine kinase-like ATPases MC28_RS19140 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS19145 SM00448 cheY-homologous receiver domain MC28_RS19145 SM00862 Transcriptional regulatory protein, C terminal MC28_RS19165 SM01329 MC28_RS19165 MC28_RS19210 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS19215 SM00919 Malic enzyme, NAD binding domain MC28_RS19215 SM01274 MC28_RS19215 MC28_RS19220 SM00481 DNA polymerase alpha chain like domain MC28_RS19250 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_RS19260 SM00849 Metallo-beta-lactamase superfamily MC28_RS19310 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MC28_RS19310 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MC28_RS19435 SM00981 MC28_RS19435 MC28_RS19475 SM00363 S4 RNA-binding domain MC28_RS19475 SM01390 MC28_RS19475 MC28_RS19495 SM00363 S4 RNA-binding domain MC28_RS19515 SM01266 MC28_RS19515 MC28_RS19530 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_RS19550 SM00448 cheY-homologous receiver domain MC28_RS19550 SM00862 Transcriptional regulatory protein, C terminal MC28_RS19555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS19555 SM00387 Histidine kinase-like ATPases MC28_RS19555 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS19560 SM00248 ankyrin repeats MC28_RS19590 SM00354 helix_turn _helix lactose operon repressor MC28_RS19640 SM00422 helix_turn_helix, mercury resistance MC28_RS19655 SM00382 ATPases associated with a variety of cellular activities MC28_RS19655 SM00843 MC28_RS19655 MC28_RS19660 SM00646 MC28_RS19660 MC28_RS19700 SM00849 Metallo-beta-lactamase superfamily MC28_RS19720 SM00642 Alpha-amylase domain MC28_RS19735 SM00420 helix_turn_helix, Deoxyribose operon repressor MC28_RS19740 SM00363 S4 RNA-binding domain MC28_RS19760 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS19785 SM01058 CarD-like/TRCF domain MC28_RS19820 SM00852 Probable molybdopterin binding domain MC28_RS19835 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS19855 SM00450 Rhodanese Homology Domain MC28_RS19940 SM00382 ATPases associated with a variety of cellular activities MC28_RS19960 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS19970 SM00382 ATPases associated with a variety of cellular activities MC28_RS19980 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_RS19980 SM01091 Transporter associated domain MC28_RS20000 SM01260 MC28_RS20000 MC28_RS20040 SM00014 Acid phosphatase homologues MC28_RS20055 SM00852 Probable molybdopterin binding domain MC28_RS20100 SM00387 Histidine kinase-like ATPases MC28_RS20105 SM00387 Histidine kinase-like ATPases MC28_RS20105 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS20110 SM01060 MC28_RS20110 MC28_RS20140 SM00382 ATPases associated with a variety of cellular activities MC28_RS20200 SM01234 MC28_RS20200 MC28_RS20205 SM00947 Carbonic anhydrase MC28_RS20275 SM00899 MC28_RS20275 MC28_RS20285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS20285 SM00387 Histidine kinase-like ATPases MC28_RS20285 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS20290 SM00448 cheY-homologous receiver domain MC28_RS20290 SM00862 Transcriptional regulatory protein, C terminal MC28_RS20320 SM00046 Diacylglycerol kinase catalytic domain (presumed) MC28_RS20345 SM00382 ATPases associated with a variety of cellular activities MC28_RS20385 SM00382 ATPases associated with a variety of cellular activities MC28_RS20390 SM00342 helix_turn_helix, arabinose operon control protein MC28_RS20390 SM00871 Bacterial transcription activator, effector binding domain MC28_RS20400 SM00382 ATPases associated with a variety of cellular activities MC28_RS20410 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS20425 SM00448 cheY-homologous receiver domain MC28_RS20425 SM00862 Transcriptional regulatory protein, C terminal MC28_RS20430 SM00387 Histidine kinase-like ATPases MC28_RS20445 SM00382 ATPases associated with a variety of cellular activities MC28_RS20465 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS20465 SM00866 MC28_RS20465 MC28_RS20495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS20495 SM00387 Histidine kinase-like ATPases MC28_RS20495 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS20500 SM00448 cheY-homologous receiver domain MC28_RS20500 SM00862 Transcriptional regulatory protein, C terminal MC28_RS20505 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MC28_RS20545 SM00357 Cold shock protein domain MC28_RS20585 SM00642 Alpha-amylase domain MC28_RS20660 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_RS20670 SM00344 helix_turn_helix ASNC type MC28_RS20705 SM01298 MC28_RS20705 MC28_RS20710 SM00479 MC28_RS20710 MC28_RS20795 SM00871 Bacterial transcription activator, effector binding domain MC28_RS20855 SM00382 ATPases associated with a variety of cellular activities MC28_RS20920 SM00382 ATPases associated with a variety of cellular activities MC28_RS20980 SM00422 helix_turn_helix, mercury resistance MC28_RS20995 SM00855 Phosphoglycerate mutase family MC28_RS21005 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_RS21050 SM00382 ATPases associated with a variety of cellular activities MC28_RS21070 SM00382 ATPases associated with a variety of cellular activities MC28_RS21070 SM00930 MC28_RS21070 MC28_RS21085 SM00493 MC28_RS21085 MC28_RS21145 SM00849 Metallo-beta-lactamase superfamily MC28_RS21195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS21195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS21255 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS21280 SM00448 cheY-homologous receiver domain MC28_RS21280 SM00862 Transcriptional regulatory protein, C terminal MC28_RS21285 SM00387 Histidine kinase-like ATPases MC28_RS21285 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS21305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS21305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS21310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS21310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS21330 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS21460 SM00363 S4 RNA-binding domain MC28_RS21470 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain MC28_RS21475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS21510 SM00382 ATPases associated with a variety of cellular activities MC28_RS21535 SM00344 helix_turn_helix ASNC type MC28_RS21545 SM00344 helix_turn_helix ASNC type MC28_RS21550 SM00947 Carbonic anhydrase MC28_RS21555 SM01116 MC28_RS21555 MC28_RS21570 SM00382 ATPases associated with a variety of cellular activities MC28_RS21590 SM00448 cheY-homologous receiver domain MC28_RS21590 SM00862 Transcriptional regulatory protein, C terminal MC28_RS21600 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_RS21600 SM00357 Cold shock protein domain MC28_RS21600 SM00955 MC28_RS21600 MC28_RS21630 SM01192 MC28_RS21630 MC28_RS21630 SM01193 MC28_RS21630 MC28_RS21650 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MC28_RS21760 SM00028 Tetratricopeptide repeats MC28_RS21800 SM00487 DEAD-like helicases superfamily MC28_RS21800 SM00490 helicase superfamily c-terminal domain MC28_RS21810 SM00422 helix_turn_helix, mercury resistance MC28_RS21820 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS21835 SM00422 helix_turn_helix, mercury resistance MC28_RS21845 SM00382 ATPases associated with a variety of cellular activities MC28_RS21855 SM00382 ATPases associated with a variety of cellular activities MC28_RS21865 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_RS21865 SM00245 tail specific protease MC28_RS21875 SM00382 ATPases associated with a variety of cellular activities MC28_RS21885 SM00937 MC28_RS21885 MC28_RS21890 SM00957 SecA DEAD-like domain MC28_RS21890 SM00958 SecA preprotein cross-linking domain MC28_RS21900 SM00357 Cold shock protein domain MC28_RS21910 SM00487 DEAD-like helicases superfamily MC28_RS21910 SM00490 helicase superfamily c-terminal domain MC28_RS21945 SM00984 UDP binding domain MC28_RS21960 SM00382 ATPases associated with a variety of cellular activities MC28_RS21965 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. MC28_RS22115 SM00287 Bacterial SH3 domain homologues MC28_RS22145 SM00287 Bacterial SH3 domain homologues MC28_RS22160 SM00487 DEAD-like helicases superfamily MC28_RS22160 SM00490 helicase superfamily c-terminal domain MC28_RS22205 SM00382 ATPases associated with a variety of cellular activities MC28_RS22230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS22230 SM00387 Histidine kinase-like ATPases MC28_RS22230 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS22235 SM00448 cheY-homologous receiver domain MC28_RS22235 SM00862 Transcriptional regulatory protein, C terminal MC28_RS22275 SM00984 UDP binding domain MC28_RS22370 SM00382 ATPases associated with a variety of cellular activities MC28_RS22375 SM00850 LytTr DNA-binding domain MC28_RS22455 SM00052 Putative diguanylate phosphodiesterase MC28_RS22455 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MC28_RS22455 SM00091 PAS domain MC28_RS22455 SM00267 diguanylate cyclase MC28_RS22475 SM00382 ATPases associated with a variety of cellular activities MC28_RS22545 SM00226 Low molecular weight phosphatase family MC28_RS22560 SM00903 Flavin reductase like domain MC28_RS22595 SM00937 MC28_RS22595 MC28_RS22610 SM00357 Cold shock protein domain MC28_RS22610 SM00382 ATPases associated with a variety of cellular activities MC28_RS22610 SM00959 Rho termination factor, N-terminal domain MC28_RS22630 SM00448 cheY-homologous receiver domain MC28_RS22680 SM00155 Phospholipase D. Active site motifs. MC28_RS22690 SM00052 Putative diguanylate phosphodiesterase MC28_RS22690 SM00091 PAS domain MC28_RS22690 SM00267 diguanylate cyclase MC28_RS22700 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS22710 SM00421 helix_turn_helix, Lux Regulon MC28_RS22710 SM00448 cheY-homologous receiver domain MC28_RS22725 SM00382 ATPases associated with a variety of cellular activities MC28_RS22760 SM00836 DALR anticodon binding domain MC28_RS22760 SM01016 Arginyl tRNA synthetase N terminal dom MC28_RS22800 SM00422 helix_turn_helix, mercury resistance MC28_RS22830 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_RS22840 SM00382 ATPases associated with a variety of cellular activities MC28_RS22880 SM00936 Penicillin-binding protein 5, C-terminal domain MC28_RS22925 SM00986 Uracil DNA glycosylase superfamily MC28_RS22925 SM00987 UreE urease accessory protein, C-terminal domain MC28_RS22935 SM00382 ATPases associated with a variety of cellular activities MC28_RS22945 SM00354 helix_turn _helix lactose operon repressor MC28_RS22980 SM00100 Cyclic nucleotide-monophosphate binding domain MC28_RS22990 SM00421 helix_turn_helix, Lux Regulon MC28_RS22990 SM00448 cheY-homologous receiver domain MC28_RS22995 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MC28_RS23005 SM00267 diguanylate cyclase MC28_RS23020 SM00448 cheY-homologous receiver domain MC28_RS23020 SM00850 LytTr DNA-binding domain MC28_RS23050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS23085 SM00382 ATPases associated with a variety of cellular activities MC28_RS23135 SM00448 cheY-homologous receiver domain MC28_RS23135 SM00850 LytTr DNA-binding domain MC28_RS23140 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MC28_RS23140 SM00387 Histidine kinase-like ATPases MC28_RS23195 SM00487 DEAD-like helicases superfamily MC28_RS23195 SM00490 helicase superfamily c-terminal domain MC28_RS23205 SM01240 MC28_RS23205 MC28_RS23230 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_RS23235 SM00849 Metallo-beta-lactamase superfamily MC28_RS23250 SM00091 PAS domain MC28_RS23250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS23250 SM00387 Histidine kinase-like ATPases MC28_RS23250 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS23255 SM00448 cheY-homologous receiver domain MC28_RS23255 SM00862 Transcriptional regulatory protein, C terminal MC28_RS23280 SM00788 Adenylosuccinate synthetase MC28_RS23295 SM00267 diguanylate cyclase MC28_RS23340 SM00470 ParB-like nuclease domain MC28_RS23350 SM00470 ParB-like nuclease domain MC28_RS23360 SM01228 MC28_RS23360 MC28_RS23370 SM00393 Putative single-stranded nucleic acids-binding domain MC28_RS23370 SM01245 MC28_RS23370 MC28_RS23390 SM00382 ATPases associated with a variety of cellular activities MC28_RS23390 SM00760 Bacterial dnaA protein helix-turn-helix domain MC28_RS23395 SM00480 DNA polymerase III beta subunit MC28_RS23410 SM00387 Histidine kinase-like ATPases MC28_RS23410 SM00433 TopoisomeraseII MC28_RS23415 SM00434 DNA Topoisomerase IV MC28_RS23440 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_RS23440 SM01240 MC28_RS23440 MC28_RS23445 SM00936 Penicillin-binding protein 5, C-terminal domain MC28_RS23495 SM00382 ATPases associated with a variety of cellular activities MC28_RS23505 SM00493 MC28_RS23505 MC28_RS23580 SM00966 SpoVT / AbrB like domain MC28_RS23595 SM00493 MC28_RS23595 MC28_RS23600 SM00650 Ribosomal RNA adenine dimethylases MC28_RS23645 SM01400 MC28_RS23645 MC28_RS23660 SM00487 DEAD-like helicases superfamily MC28_RS23660 SM00490 helicase superfamily c-terminal domain MC28_RS23660 SM00982 MC28_RS23660 MC28_RS23660 SM01058 CarD-like/TRCF domain MC28_RS23665 SM00966 SpoVT / AbrB like domain MC28_RS23680 SM00363 S4 RNA-binding domain MC28_RS23700 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_RS23715 SM00331 Sigma factor PP2C-like phosphatases MC28_RS23715 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MC28_RS23720 SM00977 TilS substrate C-terminal domain MC28_RS23730 SM00382 ATPases associated with a variety of cellular activities MC28_RS23770 SM00905 Dihydroneopterin aldolase MC28_RS23780 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS23825 SM00382 ATPases associated with a variety of cellular activities MC28_RS23825 SM01086 C-terminal, D2-small domain, of ClpB protein MC28_RS23830 SM00382 ATPases associated with a variety of cellular activities MC28_RS23840 SM00670 Large family of predicted nucleotide-binding domains MC28_RS23865 SM00840 MC28_RS23865 MC28_RS23870 SM00535 Ribonuclease III family MC28_RS23875 SM00967 RNA 2'-O ribose methyltransferase substrate binding MC28_RS23885 SM00421 helix_turn_helix, Lux Regulon MC28_RS23895 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. MC28_RS23900 SM00649 Ribosomal protein L11/L12 MC28_RS23930 SM00663 RNA polymerase I subunit A N-terminus MC28_RS23950 SM00838 Elongation factor G C-terminus MC28_RS23950 SM00889 Elongation factor G, domain IV MC28_RS23960 SM01403 MC28_RS23960 MC28_RS23980 SM01382 MC28_RS23980 MC28_RS23980 SM01383 MC28_RS23980 MC28_RS23995 SM00322 K homology RNA-binding domain MC28_RS24015 SM01374 MC28_RS24015 MC28_RS24020 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MC28_RS24080 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_RS24100 SM00662 RNA polymerases D MC28_RS24110 SM00382 ATPases associated with a variety of cellular activities MC28_RS24115 SM00382 ATPases associated with a variety of cellular activities MC28_RS24145 SM00646 MC28_RS24145 MC28_RS24160 SM01251 MC28_RS24160 MC28_RS24300 SM00382 ATPases associated with a variety of cellular activities MC28_RS24300 SM00930 MC28_RS24300 MC28_RS24310 SM00829 Enoylreductase MC28_RS24360 SM00382 ATPases associated with a variety of cellular activities MC28_RS24365 SM00382 ATPases associated with a variety of cellular activities MC28_RS24380 SM00342 helix_turn_helix, arabinose operon control protein MC28_RS24450 SM00354 helix_turn _helix lactose operon repressor MC28_RS24500 SM00382 ATPases associated with a variety of cellular activities MC28_RS24525 SM00382 ATPases associated with a variety of cellular activities MC28_RS24530 SM00382 ATPases associated with a variety of cellular activities MC28_RS24605 SM00487 DEAD-like helicases superfamily MC28_RS24605 SM00490 helicase superfamily c-terminal domain MC28_RS24630 SM01005 Alanine racemase, C-terminal domain MC28_RS24645 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_RS24645 SM00732 Likely ribonuclease with RNase H fold. MC28_RS24650 SM00731 SprT homologues. MC28_RS24760 SM00382 ATPases associated with a variety of cellular activities MC28_RS24765 SM00881 CoA binding domain MC28_RS24780 SM00883 Chaperonin 10 Kd subunit MC28_RS24870 SM00448 cheY-homologous receiver domain MC28_RS24870 SM00862 Transcriptional regulatory protein, C terminal MC28_RS24875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS24875 SM00387 Histidine kinase-like ATPases MC28_RS24875 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS24995 SM01022 MC28_RS24995 MC28_RS25015 SM00382 ATPases associated with a variety of cellular activities MC28_RS25020 SM00387 Histidine kinase-like ATPases MC28_RS25020 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS25025 SM00448 cheY-homologous receiver domain MC28_RS25025 SM00862 Transcriptional regulatory protein, C terminal MC28_RS25125 SM01001 AIR carboxylase MC28_RS25135 SM00998 Adenylosuccinate lyase C-terminus MC28_RS25150 SM01211 MC28_RS25150 MC28_RS25175 SM00798 AICARFT/IMPCHase bienzyme MC28_RS25175 SM00851 MGS-like domain MC28_RS25180 SM01209 MC28_RS25180 MC28_RS25180 SM01210 MC28_RS25180 MC28_RS25190 SM00244 prohibitin homologues MC28_RS25210 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MC28_RS25210 SM00292 breast cancer carboxy-terminal domain MC28_RS25210 SM00532 Ligase N family MC28_RS25235 SM00382 ATPases associated with a variety of cellular activities MC28_RS25235 SM00930 MC28_RS25235 MC28_RS25260 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS25280 SM00845 GatB domain MC28_RS25285 SM00046 Diacylglycerol kinase catalytic domain (presumed) MC28_RS25300 SM00382 ATPases associated with a variety of cellular activities MC28_RS25350 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MC28_RS25350 SM00387 Histidine kinase-like ATPases MC28_RS25350 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS25370 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MC28_RS25415 SM01007 Class II Aldolase and Adducin N-terminal domain MC28_RS25470 SM00387 Histidine kinase-like ATPases MC28_RS25470 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS25515 SM00062 Bacterial periplasmic substrate-binding proteins MC28_RS25515 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MC28_RS25520 SM00382 ATPases associated with a variety of cellular activities MC28_RS25525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS25525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS25555 SM00100 Cyclic nucleotide-monophosphate binding domain MC28_RS25555 SM00419 helix_turn_helix, cAMP Regulatory protein MC28_RS25570 SM00642 Alpha-amylase domain MC28_RS25590 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MC28_RS25590 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MC28_RS25590 SM00493 MC28_RS25590 MC28_RS25615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS25615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS25640 SM00382 ATPases associated with a variety of cellular activities MC28_RS25645 SM00060 Fibronectin type 3 domain MC28_RS25645 SM00636 MC28_RS25645 MC28_RS25645 SM00637 MC28_RS25645 MC28_RS25680 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS25700 SM00946 Prolyl-tRNA synthetase, C-terminal MC28_RS25710 SM00047 Lysozyme subfamily 2 MC28_RS25710 SM00287 Bacterial SH3 domain homologues MC28_RS25750 SM00831 Cation transporter/ATPase, N-terminus MC28_RS25760 SM00226 Low molecular weight phosphatase family MC28_RS25850 SM00478 endonuclease III MC28_RS25885 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS25890 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS25895 SM01040 BRO family, N-terminal domain MC28_RS25920 SM00382 ATPases associated with a variety of cellular activities MC28_RS26000 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS26050 SM00507 HNH nucleases MC28_RS26135 SM00506 Appr-1"-p processing enzyme MC28_RS26155 SM00644 MC28_RS26155 MC28_RS26180 SM00382 ATPases associated with a variety of cellular activities MC28_RS26200 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS26250 SM00984 UDP binding domain MC28_RS26330 SM00478 endonuclease III MC28_RS26330 SM00525 MC28_RS26330 MC28_RS26355 SM00382 ATPases associated with a variety of cellular activities MC28_RS26375 SM00382 ATPases associated with a variety of cellular activities MC28_RS26535 SM00567 E-Z type HEAT repeats MC28_RS26550 SM00052 Putative diguanylate phosphodiesterase MC28_RS26550 SM00091 PAS domain MC28_RS26550 SM00267 diguanylate cyclase MC28_RS26555 SM00763 PrkA AAA domain MC28_RS26570 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MC28_RS26580 SM00244 prohibitin homologues MC28_RS26585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS26585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS26590 SM00091 PAS domain MC28_RS26590 SM00387 Histidine kinase-like ATPases MC28_RS26595 SM00448 cheY-homologous receiver domain MC28_RS26615 SM00248 ankyrin repeats MC28_RS26630 SM00382 ATPases associated with a variety of cellular activities MC28_RS26655 SM00448 cheY-homologous receiver domain MC28_RS26655 SM00862 Transcriptional regulatory protein, C terminal MC28_RS26660 SM00387 Histidine kinase-like ATPases MC28_RS26660 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS26675 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS26675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS26680 SM00387 Histidine kinase-like ATPases MC28_RS26685 SM00448 cheY-homologous receiver domain MC28_RS26695 SM00919 Malic enzyme, NAD binding domain MC28_RS26695 SM01274 MC28_RS26695 MC28_RS26720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS26720 SM00387 Histidine kinase-like ATPases MC28_RS26720 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS26725 SM00448 cheY-homologous receiver domain MC28_RS26725 SM00862 Transcriptional regulatory protein, C terminal MC28_RS26745 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MC28_RS26745 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MC28_RS26760 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MC28_RS26760 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MC28_RS26775 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS26790 SM00028 Tetratricopeptide repeats MC28_RS26790 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS26835 SM01091 Transporter associated domain MC28_RS26850 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_RS26880 SM00382 ATPases associated with a variety of cellular activities MC28_RS26905 SM00327 von Willebrand factor (vWF) type A domain MC28_RS26910 SM00382 ATPases associated with a variety of cellular activities MC28_RS26915 SM00155 Phospholipase D. Active site motifs. MC28_RS26925 SM00052 Putative diguanylate phosphodiesterase MC28_RS26925 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MC28_RS26925 SM00267 diguanylate cyclase MC28_RS26935 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_RS26935 SM00866 MC28_RS26935 MC28_RS26945 SM00642 Alpha-amylase domain MC28_RS26965 SM00387 Histidine kinase-like ATPases MC28_RS26970 SM00421 helix_turn_helix, Lux Regulon MC28_RS26970 SM00448 cheY-homologous receiver domain MC28_RS26995 SM00382 ATPases associated with a variety of cellular activities MC28_RS27000 SM00062 Bacterial periplasmic substrate-binding proteins MC28_RS27000 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MC28_RS27050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_RS27050 SM00387 Histidine kinase-like ATPases MC28_RS27050 SM00388 His Kinase A (phosphoacceptor) domain MC28_RS27055 SM00448 cheY-homologous receiver domain MC28_RS27055 SM00862 Transcriptional regulatory protein, C terminal MC28_RS27085 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_RS27095 SM00354 helix_turn _helix lactose operon repressor MC28_RS27110 SM00382 ATPases associated with a variety of cellular activities MC28_RS27150 SM00829 Enoylreductase MC28_RS27160 SM00770 Zinc dependent phospholipase C (alpha toxin) MC28_RS27200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_RS27210 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS27260 SM00530 Helix-turn-helix XRE-family like proteins MC28_RS27350 SM00899 MC28_RS27350 MC28_RS27765 SM00450 Rhodanese Homology Domain MC28_RS29175 SM00091 PAS domain MC28_RS29200 SM00490 helicase superfamily c-terminal domain MC28_RS33300 SM00287 Bacterial SH3 domain homologues MC28_RS33300 SM00644 MC28_RS33300 MC28_RS33320 SM00530 Helix-turn-helix XRE-family like proteins