CFN60_RS00005	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CFN60_RS00010	SM00480	DNA polymerase III beta subunit
CFN60_RS00030	SM00387	Histidine kinase-like ATPases
CFN60_RS00030	SM00433	TopoisomeraseII
CFN60_RS00035	SM00434	DNA Topoisomerase IV
CFN60_RS00070	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN60_RS00070	SM01240	CFN60_RS00070
CFN60_RS00075	SM00936	Penicillin-binding protein 5, C-terminal domain 
CFN60_RS00115	SM00257	Lysin motif
CFN60_RS00115	SM00636	CFN60_RS00115
CFN60_RS00135	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS00145	SM00493	CFN60_RS00145
CFN60_RS00240	SM00465	GIY-YIG type nucleases (URI domain)
CFN60_RS00250	SM00966	SpoVT / AbrB like domain 
CFN60_RS00265	SM01208	CFN60_RS00265
CFN60_RS00270	SM00493	CFN60_RS00270
CFN60_RS00275	SM00650	Ribosomal RNA adenine dimethylases
CFN60_RS00320	SM01400	CFN60_RS00320
CFN60_RS00340	SM00487	DEAD-like helicases superfamily
CFN60_RS00340	SM00490	helicase superfamily c-terminal domain
CFN60_RS00340	SM00982	CFN60_RS00340
CFN60_RS00340	SM01058	CarD-like/TRCF domain
CFN60_RS00345	SM00966	SpoVT / AbrB like domain 
CFN60_RS00360	SM00363	S4 RNA-binding domain
CFN60_RS00380	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN60_RS00395	SM00331	Sigma factor PP2C-like phosphatases
CFN60_RS00395	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CFN60_RS00405	SM00220	Serine/Threonine protein kinases, catalytic domain
CFN60_RS00410	SM00977	TilS substrate C-terminal domain
CFN60_RS00420	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS00465	SM00905	Dihydroneopterin aldolase
CFN60_RS00475	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS00580	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS00580	SM01086	C-terminal, D2-small domain, of ClpB protein
CFN60_RS00585	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS00595	SM00670	Large family of predicted nucleotide-binding domains
CFN60_RS00620	SM00840	CFN60_RS00620
CFN60_RS00625	SM00535	Ribonuclease III family
CFN60_RS00630	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CFN60_RS00655	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CFN60_RS00655	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CFN60_RS00660	SM00649	Ribosomal protein L11/L12
CFN60_RS00690	SM00663	RNA polymerase I subunit A N-terminus
CFN60_RS00710	SM00838	Elongation factor G C-terminus
CFN60_RS00710	SM00889	Elongation factor G, domain IV
CFN60_RS00725	SM01403	CFN60_RS00725
CFN60_RS00745	SM01382	CFN60_RS00745
CFN60_RS00745	SM01383	CFN60_RS00745
CFN60_RS00760	SM00322	K homology RNA-binding domain
CFN60_RS00780	SM01374	CFN60_RS00780
CFN60_RS00785	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CFN60_RS00845	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN60_RS00865	SM00662	RNA polymerases D
CFN60_RS00875	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS00880	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS00920	SM00646	CFN60_RS00920
CFN60_RS00935	SM01251	CFN60_RS00935
CFN60_RS01015	SM00829	Enoylreductase
CFN60_RS01050	SM00342	helix_turn_helix, arabinose operon control protein
CFN60_RS01150	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS01185	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS01205	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS01205	SM00448	cheY-homologous receiver domain
CFN60_RS01210	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS01310	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS01345	SM00450	Rhodanese Homology Domain
CFN60_RS01380	SM00387	Histidine kinase-like ATPases
CFN60_RS01385	SM00448	cheY-homologous receiver domain
CFN60_RS01455	SM00870	CFN60_RS01455
CFN60_RS01495	SM00028	Tetratricopeptide repeats
CFN60_RS01510	SM00642	Alpha-amylase domain
CFN60_RS01520	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS01570	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN60_RS01570	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS01600	SM00632	CFN60_RS01600
CFN60_RS01600	SM00642	Alpha-amylase domain
CFN60_RS01615	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS01730	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CFN60_RS01745	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CFN60_RS01785	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CFN60_RS01800	SM00823	Phosphopantetheine attachment site
CFN60_RS01805	SM00823	Phosphopantetheine attachment site
CFN60_RS01810	SM00823	Phosphopantetheine attachment site
CFN60_RS01835	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS01845	SM00062	Bacterial periplasmic substrate-binding proteins
CFN60_RS01880	SM00710	Parallel beta-helix repeats
CFN60_RS01880	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
CFN60_RS01915	SM00062	Bacterial periplasmic substrate-binding proteins
CFN60_RS01925	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS01940	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS01950	SM00448	cheY-homologous receiver domain
CFN60_RS01950	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS01955	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS01955	SM00387	Histidine kinase-like ATPases
CFN60_RS01955	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS01960	SM00028	Tetratricopeptide repeats
CFN60_RS01990	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS02020	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CFN60_RS02025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS02060	SM00420	helix_turn_helix, Deoxyribose operon repressor
CFN60_RS02115	SM00796	Allophanate hydrolase subunit 1
CFN60_RS02120	SM00797	Allophanate hydrolase subunit 2
CFN60_RS02125	SM00346	helix_turn_helix isocitrate lyase regulation
CFN60_RS02195	SM00344	helix_turn_helix ASNC type
CFN60_RS02200	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CFN60_RS02200	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CFN60_RS02200	SM00493	CFN60_RS02200
CFN60_RS02210	SM00267	diguanylate cyclase
CFN60_RS02245	SM00257	Lysin motif
CFN60_RS02260	SM00860	SMI1 / KNR4 family
CFN60_RS02360	SM00091	PAS domain
CFN60_RS02360	SM00387	Histidine kinase-like ATPases
CFN60_RS02365	SM00448	cheY-homologous receiver domain
CFN60_RS02380	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS02430	SM00487	DEAD-like helicases superfamily
CFN60_RS02430	SM00490	helicase superfamily c-terminal domain
CFN60_RS02460	SM01005	Alanine racemase, C-terminal domain
CFN60_RS02485	SM00387	Histidine kinase-like ATPases
CFN60_RS02490	SM00331	Sigma factor PP2C-like phosphatases
CFN60_RS02510	SM00331	Sigma factor PP2C-like phosphatases
CFN60_RS02510	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CFN60_RS02515	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN60_RS02515	SM00732	Likely ribonuclease with RNase H fold.
CFN60_RS02525	SM00731	SprT homologues.
CFN60_RS02635	SM00357	Cold shock protein domain
CFN60_RS02640	SM01058	CarD-like/TRCF domain
CFN60_RS02655	SM00450	Rhodanese Homology Domain
CFN60_RS02660	SM00450	Rhodanese Homology Domain
CFN60_RS02710	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS02710	SM00895	CFN60_RS02710
CFN60_RS02730	SM00342	helix_turn_helix, arabinose operon control protein
CFN60_RS02740	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS02800	SM01130	CFN60_RS02800
CFN60_RS02825	SM00829	Enoylreductase
CFN60_RS02830	SM00422	helix_turn_helix, mercury resistance
CFN60_RS02840	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS02870	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS02910	SM01266	CFN60_RS02910
CFN60_RS02920	SM00387	Histidine kinase-like ATPases
CFN60_RS02925	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS02925	SM00448	cheY-homologous receiver domain
CFN60_RS02940	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS02965	SM00825	Beta-ketoacyl synthase
CFN60_RS02970	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS02985	SM00422	helix_turn_helix, mercury resistance
CFN60_RS03005	SM01329	CFN60_RS03005
CFN60_RS03010	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS03010	SM00895	CFN60_RS03010
CFN60_RS03045	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS03045	SM00866	CFN60_RS03045
CFN60_RS03050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS03050	SM00895	CFN60_RS03050
CFN60_RS03090	SM00829	Enoylreductase
CFN60_RS03160	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS03170	SM00881	CoA binding domain
CFN60_RS03195	SM00883	Chaperonin 10 Kd subunit
CFN60_RS03225	SM00028	Tetratricopeptide repeats
CFN60_RS03225	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS03230	SM00829	Enoylreductase
CFN60_RS03285	SM00829	Enoylreductase
CFN60_RS03330	SM00460	Transglutaminase/protease-like homologues
CFN60_RS03340	SM01209	CFN60_RS03340
CFN60_RS03400	SM01001	AIR carboxylase
CFN60_RS03410	SM00998	Adenylosuccinate lyase C-terminus
CFN60_RS03425	SM01211	CFN60_RS03425
CFN60_RS03450	SM00798	AICARFT/IMPCHase bienzyme
CFN60_RS03450	SM00851	MGS-like domain
CFN60_RS03455	SM01209	CFN60_RS03455
CFN60_RS03455	SM01210	CFN60_RS03455
CFN60_RS03500	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CFN60_RS03500	SM00292	breast cancer carboxy-terminal domain
CFN60_RS03500	SM00532	Ligase N family
CFN60_RS03535	SM00845	GatB domain
CFN60_RS03550	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CFN60_RS03710	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS03775	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN60_RS03790	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS03795	SM00422	helix_turn_helix, mercury resistance
CFN60_RS03805	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS03810	SM00487	DEAD-like helicases superfamily
CFN60_RS03810	SM00490	helicase superfamily c-terminal domain
CFN60_RS03820	SM00829	Enoylreductase
CFN60_RS03835	SM00656	CFN60_RS03835
CFN60_RS03860	SM00387	Histidine kinase-like ATPases
CFN60_RS03860	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS03860	SM00448	cheY-homologous receiver domain
CFN60_RS03865	SM00448	cheY-homologous receiver domain
CFN60_RS03880	SM00387	Histidine kinase-like ATPases
CFN60_RS03885	SM00448	cheY-homologous receiver domain
CFN60_RS03900	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS03980	SM00642	Alpha-amylase domain
CFN60_RS03985	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS03985	SM00866	CFN60_RS03985
CFN60_RS04015	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS04040	SM00226	Low molecular weight phosphatase family
CFN60_RS04090	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS04100	SM00014	Acid phosphatase homologues
CFN60_RS04105	SM00448	cheY-homologous receiver domain
CFN60_RS04105	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS04110	SM00387	Histidine kinase-like ATPases
CFN60_RS04110	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS04130	SM00478	endonuclease III
CFN60_RS04165	SM00861	Transketolase, pyrimidine binding domain
CFN60_RS04180	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS04205	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS04210	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS04265	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS04335	SM00287	Bacterial SH3 domain homologues
CFN60_RS04365	SM00478	endonuclease III
CFN60_RS04365	SM00525	CFN60_RS04365
CFN60_RS04395	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS04565	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS04570	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS04575	SM01060	CFN60_RS04575
CFN60_RS04585	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS04590	SM00062	Bacterial periplasmic substrate-binding proteins
CFN60_RS04615	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS04630	SM00567	E-Z type HEAT repeats
CFN60_RS04660	SM00763	PrkA AAA domain
CFN60_RS04675	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS04705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS04710	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS04715	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS04725	SM00357	Cold shock protein domain
CFN60_RS04740	SM00267	diguanylate cyclase
CFN60_RS04790	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN60_RS04835	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN60_RS04835	SM00387	Histidine kinase-like ATPases
CFN60_RS04840	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS04840	SM00448	cheY-homologous receiver domain
CFN60_RS04860	SM00257	Lysin motif
CFN60_RS04885	SM00098	Alkaline phosphatase homologues
CFN60_RS04890	SM00257	Lysin motif
CFN60_RS04935	SM00563	Phosphate acyltransferases
CFN60_RS04940	SM01091	Transporter associated domain
CFN60_RS04945	SM00422	helix_turn_helix, mercury resistance
CFN60_RS04955	SM00825	Beta-ketoacyl synthase
CFN60_RS04960	SM01091	Transporter associated domain
CFN60_RS05020	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS05025	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS05085	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN60_RS05120	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS05140	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN60_RS05185	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS05215	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS05300	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS05345	SM00855	Phosphoglycerate mutase family
CFN60_RS05365	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN60_RS05380	SM00914	CFN60_RS05380
CFN60_RS05405	SM00894	Excalibur calcium-binding domain
CFN60_RS05445	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS05565	SM00342	helix_turn_helix, arabinose operon control protein
CFN60_RS05570	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS05605	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN60_RS05615	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN60_RS05615	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS05680	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CFN60_RS05700	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CFN60_RS05705	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CFN60_RS05760	SM00825	Beta-ketoacyl synthase
CFN60_RS05770	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS05775	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS05820	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS05825	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS05885	SM01118	CFN60_RS05885
CFN60_RS05895	SM00954	Region found in RelA / SpoT proteins
CFN60_RS06025	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS06035	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS06040	SM00966	SpoVT / AbrB like domain 
CFN60_RS06170	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS06210	SM00420	helix_turn_helix, Deoxyribose operon repressor
CFN60_RS06210	SM01134	CFN60_RS06210
CFN60_RS06225	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS06260	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CFN60_RS06260	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CFN60_RS06295	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS06330	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS06340	SM00858	CFN60_RS06340
CFN60_RS06355	SM00028	Tetratricopeptide repeats
CFN60_RS06365	SM00257	Lysin motif
CFN60_RS06365	SM00644	CFN60_RS06365
CFN60_RS06385	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS06400	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS06500	SM00257	Lysin motif
CFN60_RS06565	SM00257	Lysin motif
CFN60_RS06565	SM00644	CFN60_RS06565
CFN60_RS06615	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN60_RS06640	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS06655	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CFN60_RS06665	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS06705	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CFN60_RS06720	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS06740	SM00028	Tetratricopeptide repeats
CFN60_RS06780	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS06790	SM00257	Lysin motif
CFN60_RS06790	SM00636	CFN60_RS06790
CFN60_RS06810	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN60_RS06810	SM00924	MgtE intracellular N domain
CFN60_RS06815	SM00422	helix_turn_helix, mercury resistance
CFN60_RS06830	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS06845	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
CFN60_RS06905	SM00091	PAS domain
CFN60_RS06905	SM00387	Histidine kinase-like ATPases
CFN60_RS06905	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS06945	SM01007	Class II Aldolase and Adducin N-terminal domain
CFN60_RS06960	SM00387	Histidine kinase-like ATPases
CFN60_RS06960	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS06965	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS06980	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS06980	SM01086	C-terminal, D2-small domain, of ClpB protein
CFN60_RS07025	SM00822	CFN60_RS07025
CFN60_RS07075	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS07080	SM01061	CAT RNA binding domain
CFN60_RS07110	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN60_RS07110	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS07160	SM00260	Two component signalling adaptor domain
CFN60_RS07160	SM00448	cheY-homologous receiver domain
CFN60_RS07175	SM00257	Lysin motif
CFN60_RS07195	SM00052	Putative diguanylate phosphodiesterase
CFN60_RS07285	SM00852	Probable molybdopterin binding domain
CFN60_RS07315	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS07325	SM00420	helix_turn_helix, Deoxyribose operon repressor
CFN60_RS07325	SM01134	CFN60_RS07325
CFN60_RS07350	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS07380	SM00966	SpoVT / AbrB like domain 
CFN60_RS07385	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN60_RS07385	SM00091	PAS domain
CFN60_RS07385	SM00387	Histidine kinase-like ATPases
CFN60_RS07385	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS07405	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS07445	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CFN60_RS07455	SM00822	CFN60_RS07455
CFN60_RS07455	SM00823	Phosphopantetheine attachment site
CFN60_RS07455	SM00825	Beta-ketoacyl synthase
CFN60_RS07455	SM00826	CFN60_RS07455
CFN60_RS07460	SM00822	CFN60_RS07460
CFN60_RS07460	SM00823	Phosphopantetheine attachment site
CFN60_RS07460	SM00825	Beta-ketoacyl synthase
CFN60_RS07460	SM01294	CFN60_RS07460
CFN60_RS07465	SM00822	CFN60_RS07465
CFN60_RS07465	SM00823	Phosphopantetheine attachment site
CFN60_RS07465	SM00825	Beta-ketoacyl synthase
CFN60_RS07465	SM01294	CFN60_RS07465
CFN60_RS07470	SM00822	CFN60_RS07470
CFN60_RS07470	SM00823	Phosphopantetheine attachment site
CFN60_RS07470	SM00825	Beta-ketoacyl synthase
CFN60_RS07470	SM01294	CFN60_RS07470
CFN60_RS07475	SM00822	CFN60_RS07475
CFN60_RS07475	SM00823	Phosphopantetheine attachment site
CFN60_RS07475	SM00825	Beta-ketoacyl synthase
CFN60_RS07475	SM01294	CFN60_RS07475
CFN60_RS07480	SM00822	CFN60_RS07480
CFN60_RS07480	SM00823	Phosphopantetheine attachment site
CFN60_RS07480	SM01294	CFN60_RS07480
CFN60_RS07495	SM00861	Transketolase, pyrimidine binding domain
CFN60_RS07595	SM00838	Elongation factor G C-terminus
CFN60_RS07615	SM00670	Large family of predicted nucleotide-binding domains
CFN60_RS07640	SM00878	Biotin carboxylase C-terminal domain
CFN60_RS07685	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN60_RS07790	SM00740	CFN60_RS07790
CFN60_RS07795	SM00740	CFN60_RS07795
CFN60_RS07835	SM00842	Cell division protein FtsA
CFN60_RS07840	SM00864	Tubulin/FtsZ family, GTPase domain
CFN60_RS07840	SM00865	Tubulin/FtsZ family, C-terminal domain
CFN60_RS07865	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS07900	SM00363	S4 RNA-binding domain
CFN60_RS07930	SM00363	S4 RNA-binding domain
CFN60_RS07955	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CFN60_RS07960	SM00851	MGS-like domain
CFN60_RS07960	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CFN60_RS07960	SM01209	CFN60_RS07960
CFN60_RS07975	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CFN60_RS08030	SM00831	Cation transporter/ATPase, N-terminus
CFN60_RS08045	SM00072	Guanylate kinase homologues.
CFN60_RS08050	SM01409	CFN60_RS08050
CFN60_RS08060	SM00487	DEAD-like helicases superfamily
CFN60_RS08060	SM00490	helicase superfamily c-terminal domain
CFN60_RS08085	SM00331	Sigma factor PP2C-like phosphatases
CFN60_RS08085	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CFN60_RS08090	SM00220	Serine/Threonine protein kinases, catalytic domain
CFN60_RS08090	SM00740	CFN60_RS08090
CFN60_RS08105	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
CFN60_RS08125	SM01120	CFN60_RS08125
CFN60_RS08125	SM01121	CFN60_RS08125
CFN60_RS08140	SM00487	DEAD-like helicases superfamily
CFN60_RS08140	SM00490	helicase superfamily c-terminal domain
CFN60_RS08155	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CFN60_RS08160	SM00822	CFN60_RS08160
CFN60_RS08170	SM00358	Double-stranded RNA binding motif
CFN60_RS08170	SM00535	Ribonuclease III family
CFN60_RS08175	SM00968	SMC proteins Flexible Hinge Domain
CFN60_RS08180	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS08180	SM00962	SRP54-type protein, GTPase domain
CFN60_RS08180	SM00963	SRP54-type protein, helical bundle domain
CFN60_RS08195	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS08195	SM00962	SRP54-type protein, GTPase domain
CFN60_RS08195	SM00963	SRP54-type protein, helical bundle domain
CFN60_RS08255	SM00881	CoA binding domain
CFN60_RS08265	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CFN60_RS08265	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CFN60_RS08265	SM00493	CFN60_RS08265
CFN60_RS08285	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS08285	SM01086	C-terminal, D2-small domain, of ClpB protein
CFN60_RS08325	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS08375	SM00448	cheY-homologous receiver domain
CFN60_RS08410	SM00962	SRP54-type protein, GTPase domain
CFN60_RS08420	SM00448	cheY-homologous receiver domain
CFN60_RS08425	SM00073	Histidine Phosphotransfer domain
CFN60_RS08425	SM00260	Two component signalling adaptor domain
CFN60_RS08425	SM00387	Histidine kinase-like ATPases
CFN60_RS08425	SM01231	CFN60_RS08425
CFN60_RS08430	SM00260	Two component signalling adaptor domain
CFN60_RS08490	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN60_RS08500	SM00479	CFN60_RS08500
CFN60_RS08500	SM00481	DNA polymerase alpha chain like domain
CFN60_RS08510	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN60_RS08510	SM00322	K homology RNA-binding domain
CFN60_RS08545	SM00904	Riboflavin kinase
CFN60_RS08550	SM01387	CFN60_RS08550
CFN60_RS08555	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN60_RS08555	SM00322	K homology RNA-binding domain
CFN60_RS08585	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CFN60_RS08595	SM01130	CFN60_RS08595
CFN60_RS08600	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS08615	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS08615	SM00843	CFN60_RS08615
CFN60_RS08620	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS08620	SM00866	CFN60_RS08620
CFN60_RS08630	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS08665	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS08675	SM00852	Probable molybdopterin binding domain
CFN60_RS08680	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS08690	SM00322	K homology RNA-binding domain
CFN60_RS08690	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN60_RS08705	SM00829	Enoylreductase
CFN60_RS08715	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN60_RS08730	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CFN60_RS08730	SM00534	ATPase domain of DNA mismatch repair MUTS family
CFN60_RS08735	SM00853	MutL C terminal dimerisation domain
CFN60_RS08735	SM01340	CFN60_RS08735
CFN60_RS08780	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS08785	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CFN60_RS08790	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CFN60_RS08795	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CFN60_RS08820	SM00822	CFN60_RS08820
CFN60_RS08820	SM00823	Phosphopantetheine attachment site
CFN60_RS08820	SM00825	Beta-ketoacyl synthase
CFN60_RS08820	SM00826	CFN60_RS08820
CFN60_RS08820	SM01294	CFN60_RS08820
CFN60_RS08825	SM00822	CFN60_RS08825
CFN60_RS08825	SM00823	Phosphopantetheine attachment site
CFN60_RS08825	SM00825	Beta-ketoacyl synthase
CFN60_RS08825	SM00826	CFN60_RS08825
CFN60_RS08825	SM01294	CFN60_RS08825
CFN60_RS08830	SM00822	CFN60_RS08830
CFN60_RS08830	SM00823	Phosphopantetheine attachment site
CFN60_RS08830	SM00825	Beta-ketoacyl synthase
CFN60_RS08830	SM00826	CFN60_RS08830
CFN60_RS08830	SM01294	CFN60_RS08830
CFN60_RS08835	SM00822	CFN60_RS08835
CFN60_RS08835	SM00823	Phosphopantetheine attachment site
CFN60_RS08835	SM00825	Beta-ketoacyl synthase
CFN60_RS08835	SM00826	CFN60_RS08835
CFN60_RS08835	SM01294	CFN60_RS08835
CFN60_RS08840	SM00823	Phosphopantetheine attachment site
CFN60_RS08840	SM00825	Beta-ketoacyl synthase
CFN60_RS08840	SM01294	CFN60_RS08840
CFN60_RS08945	SM00646	CFN60_RS08945
CFN60_RS08955	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS08970	SM00422	helix_turn_helix, mercury resistance
CFN60_RS08975	SM01230	CFN60_RS08975
CFN60_RS09080	SM00829	Enoylreductase
CFN60_RS09175	SM00710	Parallel beta-helix repeats
CFN60_RS09215	SM00257	Lysin motif
CFN60_RS09220	SM00857	Resolvase, N terminal domain
CFN60_RS09230	SM00861	Transketolase, pyrimidine binding domain
CFN60_RS09255	SM00448	cheY-homologous receiver domain
CFN60_RS09325	SM01207	CFN60_RS09325
CFN60_RS09330	SM00881	CoA binding domain
CFN60_RS09335	SM00387	Histidine kinase-like ATPases
CFN60_RS09335	SM00433	TopoisomeraseII
CFN60_RS09340	SM00434	DNA Topoisomerase IV
CFN60_RS09360	SM00829	Enoylreductase
CFN60_RS09380	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS09420	SM01067	Cellulose binding domain
CFN60_RS09430	SM00387	Histidine kinase-like ATPases
CFN60_RS09430	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS09435	SM00448	cheY-homologous receiver domain
CFN60_RS09435	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS09445	SM00606	Cellulose Binding Domain Type IV
CFN60_RS09450	SM00823	Phosphopantetheine attachment site
CFN60_RS09450	SM00824	Thioesterase
CFN60_RS09455	SM00823	Phosphopantetheine attachment site
CFN60_RS09460	SM00823	Phosphopantetheine attachment site
CFN60_RS09460	SM00825	Beta-ketoacyl synthase
CFN60_RS09465	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CFN60_RS09470	SM00822	CFN60_RS09470
CFN60_RS09475	SM00882	Coenzyme A transferase
CFN60_RS09480	SM00882	Coenzyme A transferase
CFN60_RS09495	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN60_RS09495	SM00876	Biotin and Thiamin Synthesis associated domain
CFN60_RS09555	SM00878	Biotin carboxylase C-terminal domain
CFN60_RS09580	SM00824	Thioesterase
CFN60_RS09585	SM00823	Phosphopantetheine attachment site
CFN60_RS09590	SM00823	Phosphopantetheine attachment site
CFN60_RS09595	SM00823	Phosphopantetheine attachment site
CFN60_RS09595	SM01294	CFN60_RS09595
CFN60_RS09600	SM00823	Phosphopantetheine attachment site
CFN60_RS09650	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CFN60_RS09665	SM00829	Enoylreductase
CFN60_RS09690	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CFN60_RS09705	SM00822	CFN60_RS09705
CFN60_RS09735	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CFN60_RS09750	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS09760	SM00860	SMI1 / KNR4 family
CFN60_RS09775	SM00342	helix_turn_helix, arabinose operon control protein
CFN60_RS09785	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS09795	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CFN60_RS09830	SM00257	Lysin motif
CFN60_RS09835	SM00341	Helicase and RNase D C-terminal
CFN60_RS09835	SM00487	DEAD-like helicases superfamily
CFN60_RS09835	SM00490	helicase superfamily c-terminal domain
CFN60_RS09835	SM00956	CFN60_RS09835
CFN60_RS09920	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS09930	SM00861	Transketolase, pyrimidine binding domain
CFN60_RS09935	SM00327	von Willebrand factor (vWF) type A domain
CFN60_RS09940	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS09950	SM00257	Lysin motif
CFN60_RS10055	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS10055	SM00866	CFN60_RS10055
CFN60_RS10060	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN60_RS10060	SM00245	tail specific protease
CFN60_RS10095	SM00014	Acid phosphatase homologues
CFN60_RS10145	SM00882	Coenzyme A transferase
CFN60_RS10150	SM00882	Coenzyme A transferase
CFN60_RS10160	SM00871	Bacterial transcription activator, effector binding domain
CFN60_RS10295	SM00028	Tetratricopeptide repeats
CFN60_RS10310	SM00450	Rhodanese Homology Domain
CFN60_RS10310	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS10320	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS10320	SM00448	cheY-homologous receiver domain
CFN60_RS10325	SM00387	Histidine kinase-like ATPases
CFN60_RS10350	SM00860	SMI1 / KNR4 family
CFN60_RS10360	SM00860	SMI1 / KNR4 family
CFN60_RS10365	SM00318	Staphylococcal nuclease homologues
CFN60_RS10365	SM00894	Excalibur calcium-binding domain
CFN60_RS10405	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS10435	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS10480	SM00567	E-Z type HEAT repeats
CFN60_RS10480	SM00932	Scaffold protein Nfu/NifU N terminal
CFN60_RS10485	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN60_RS10505	SM00357	Cold shock protein domain
CFN60_RS10545	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CFN60_RS10545	SM00475	5'-3' exonuclease
CFN60_RS10625	SM00491	CFN60_RS10625
CFN60_RS10640	SM00981	CFN60_RS10640
CFN60_RS10670	SM00487	DEAD-like helicases superfamily
CFN60_RS10670	SM00490	helicase superfamily c-terminal domain
CFN60_RS10720	SM00060	Fibronectin type 3 domain
CFN60_RS10730	SM00478	endonuclease III
CFN60_RS10760	SM00479	CFN60_RS10760
CFN60_RS10760	SM00487	DEAD-like helicases superfamily
CFN60_RS10760	SM00491	CFN60_RS10760
CFN60_RS10800	SM00851	MGS-like domain
CFN60_RS10820	SM00835	Cupin
CFN60_RS10855	SM00914	CFN60_RS10855
CFN60_RS10860	SM00028	Tetratricopeptide repeats
CFN60_RS10925	SM00138	Methyltransferase, chemotaxis proteins 
CFN60_RS10930	SM00562	CFN60_RS10930
CFN60_RS10960	SM00411	bacterial (prokaryotic) histone like domain
CFN60_RS11005	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN60_RS11045	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CFN60_RS11065	SM00257	Lysin motif
CFN60_RS11075	SM00487	DEAD-like helicases superfamily
CFN60_RS11075	SM00490	helicase superfamily c-terminal domain
CFN60_RS11110	SM00091	PAS domain
CFN60_RS11110	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS11110	SM00387	Histidine kinase-like ATPases
CFN60_RS11110	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS11115	SM00448	cheY-homologous receiver domain
CFN60_RS11115	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS11135	SM00363	S4 RNA-binding domain
CFN60_RS11150	SM00936	Penicillin-binding protein 5, C-terminal domain 
CFN60_RS11280	SM00387	Histidine kinase-like ATPases
CFN60_RS11290	SM00936	Penicillin-binding protein 5, C-terminal domain 
CFN60_RS11335	SM00919	Malic enzyme, NAD binding domain
CFN60_RS11335	SM01274	CFN60_RS11335
CFN60_RS11350	SM00870	CFN60_RS11350
CFN60_RS11355	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS11460	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS11485	SM00823	Phosphopantetheine attachment site
CFN60_RS11485	SM00825	Beta-ketoacyl synthase
CFN60_RS11485	SM00829	Enoylreductase
CFN60_RS11485	SM01294	CFN60_RS11485
CFN60_RS11490	SM00822	CFN60_RS11490
CFN60_RS11490	SM00823	Phosphopantetheine attachment site
CFN60_RS11490	SM00825	Beta-ketoacyl synthase
CFN60_RS11490	SM00826	CFN60_RS11490
CFN60_RS11495	SM00822	CFN60_RS11495
CFN60_RS11495	SM00823	Phosphopantetheine attachment site
CFN60_RS11495	SM00825	Beta-ketoacyl synthase
CFN60_RS11495	SM01294	CFN60_RS11495
CFN60_RS11500	SM00822	CFN60_RS11500
CFN60_RS11500	SM00823	Phosphopantetheine attachment site
CFN60_RS11500	SM00825	Beta-ketoacyl synthase
CFN60_RS11500	SM00826	CFN60_RS11500
CFN60_RS11500	SM01294	CFN60_RS11500
CFN60_RS11505	SM00822	CFN60_RS11505
CFN60_RS11505	SM00823	Phosphopantetheine attachment site
CFN60_RS11505	SM00825	Beta-ketoacyl synthase
CFN60_RS11505	SM00826	CFN60_RS11505
CFN60_RS11505	SM01294	CFN60_RS11505
CFN60_RS11510	SM00822	CFN60_RS11510
CFN60_RS11510	SM00823	Phosphopantetheine attachment site
CFN60_RS11510	SM00825	Beta-ketoacyl synthase
CFN60_RS11510	SM01294	CFN60_RS11510
CFN60_RS11515	SM00822	CFN60_RS11515
CFN60_RS11515	SM00823	Phosphopantetheine attachment site
CFN60_RS11515	SM00825	Beta-ketoacyl synthase
CFN60_RS11515	SM00826	CFN60_RS11515
CFN60_RS11515	SM01294	CFN60_RS11515
CFN60_RS11540	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CFN60_RS11550	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CFN60_RS11595	SM01350	CFN60_RS11595
CFN60_RS11640	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS11650	SM00062	Bacterial periplasmic substrate-binding proteins
CFN60_RS11650	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CFN60_RS11660	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CFN60_RS11670	SM00861	Transketolase, pyrimidine binding domain
CFN60_RS11690	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CFN60_RS11700	SM00091	PAS domain
CFN60_RS11700	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS11745	SM00646	CFN60_RS11745
CFN60_RS11760	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS11780	SM01005	Alanine racemase, C-terminal domain
CFN60_RS11785	SM00448	cheY-homologous receiver domain
CFN60_RS11790	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN60_RS11805	SM00363	S4 RNA-binding domain
CFN60_RS11810	SM00861	Transketolase, pyrimidine binding domain
CFN60_RS11845	SM00878	Biotin carboxylase C-terminal domain
CFN60_RS11890	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS11900	SM00841	Elongation factor P, C-terminal
CFN60_RS11900	SM01185	CFN60_RS11900
CFN60_RS11930	SM00529	Helix-turn-helix diphteria tox regulatory element
CFN60_RS11940	SM00450	Rhodanese Homology Domain
CFN60_RS11960	SM00487	DEAD-like helicases superfamily
CFN60_RS11960	SM00490	helicase superfamily c-terminal domain
CFN60_RS11975	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS12035	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS12045	SM01091	Transporter associated domain
CFN60_RS12070	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS12090	SM00631	CFN60_RS12090
CFN60_RS12135	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS12140	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS12185	SM00257	Lysin motif
CFN60_RS12220	SM00518	AP endonuclease family 2
CFN60_RS12225	SM00487	DEAD-like helicases superfamily
CFN60_RS12225	SM00490	helicase superfamily c-terminal domain
CFN60_RS12260	SM00400	zinc finger
CFN60_RS12260	SM00493	CFN60_RS12260
CFN60_RS12275	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN60_RS12320	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN60_RS12370	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN60_RS12385	SM00271	DnaJ molecular chaperone homology domain
CFN60_RS12405	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN60_RS12410	SM00838	Elongation factor G C-terminus
CFN60_RS12445	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS12455	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CFN60_RS12475	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN60_RS12485	SM01103	CFN60_RS12485
CFN60_RS12555	SM00342	helix_turn_helix, arabinose operon control protein
CFN60_RS12555	SM00871	Bacterial transcription activator, effector binding domain
CFN60_RS12575	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS12580	SM00448	cheY-homologous receiver domain
CFN60_RS12580	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS12615	SM00860	SMI1 / KNR4 family
CFN60_RS12705	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS12760	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CFN60_RS12760	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CFN60_RS12845	SM00732	Likely ribonuclease with RNase H fold.
CFN60_RS12855	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CFN60_RS12865	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS12870	SM00062	Bacterial periplasmic substrate-binding proteins
CFN60_RS12870	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CFN60_RS12900	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS12905	SM00028	Tetratricopeptide repeats
CFN60_RS12925	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS12955	SM00287	Bacterial SH3 domain homologues
CFN60_RS12955	SM00646	CFN60_RS12955
CFN60_RS12965	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN60_RS12965	SM00954	Region found in RelA / SpoT proteins
CFN60_RS13015	SM01323	CFN60_RS13015
CFN60_RS13035	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS13040	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CFN60_RS13060	SM00257	Lysin motif
CFN60_RS13105	SM01317	CFN60_RS13105
CFN60_RS13200	SM00257	Lysin motif
CFN60_RS13210	SM01004	Delta-aminolevulinic acid dehydratase
CFN60_RS13245	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS13245	SM00464	Found in ATP-dependent protease La (LON)
CFN60_RS13250	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS13255	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS13255	SM00994	ClpX C4-type zinc finger
CFN60_RS13255	SM01086	C-terminal, D2-small domain, of ClpB protein
CFN60_RS13280	SM01329	CFN60_RS13280
CFN60_RS13285	SM00917	LeuA allosteric (dimerisation) domain
CFN60_RS13330	SM00487	DEAD-like helicases superfamily
CFN60_RS13330	SM00490	helicase superfamily c-terminal domain
CFN60_RS13370	SM00909	Sporulation and spore germination
CFN60_RS13380	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS13385	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS13425	SM00465	GIY-YIG type nucleases (URI domain)
CFN60_RS13435	SM00813	Alpha-L-arabinofuranosidase C-terminus
CFN60_RS13440	SM00893	Electron transfer flavoprotein domain
CFN60_RS13480	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CFN60_RS13480	SM00481	DNA polymerase alpha chain like domain
CFN60_RS13480	SM00483	DNA polymerase X family
CFN60_RS13500	SM00873	B3/4 domain
CFN60_RS13500	SM00874	tRNA synthetase B5 domain
CFN60_RS13500	SM00896	Ferredoxin-fold anticodon binding domain
CFN60_RS13510	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CFN60_RS13540	SM00813	Alpha-L-arabinofuranosidase C-terminus
CFN60_RS13570	SM01007	Class II Aldolase and Adducin N-terminal domain
CFN60_RS13630	SM00448	cheY-homologous receiver domain
CFN60_RS13630	SM00850	LytTr DNA-binding domain
CFN60_RS13635	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN60_RS13635	SM00387	Histidine kinase-like ATPases
CFN60_RS13650	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CFN60_RS13665	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS13685	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CFN60_RS13715	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CFN60_RS13715	SM01232	CFN60_RS13715
CFN60_RS13720	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CFN60_RS13720	SM00474	3'-5' exonuclease
CFN60_RS13720	SM00475	5'-3' exonuclease
CFN60_RS13720	SM00482	DNA polymerase A domain
CFN60_RS13725	SM00091	PAS domain
CFN60_RS13725	SM00387	Histidine kinase-like ATPases
CFN60_RS13725	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS13730	SM00448	cheY-homologous receiver domain
CFN60_RS13730	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS13740	SM01329	CFN60_RS13740
CFN60_RS13750	SM00028	Tetratricopeptide repeats
CFN60_RS13810	SM00919	Malic enzyme, NAD binding domain
CFN60_RS13810	SM01274	CFN60_RS13810
CFN60_RS13815	SM00481	DNA polymerase alpha chain like domain
CFN60_RS13845	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN60_RS13850	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS13875	SM00852	Probable molybdopterin binding domain
CFN60_RS13935	SM00981	CFN60_RS13935
CFN60_RS13970	SM00267	diguanylate cyclase
CFN60_RS13980	SM00363	S4 RNA-binding domain
CFN60_RS13980	SM01390	CFN60_RS13980
CFN60_RS13995	SM00491	CFN60_RS13995
CFN60_RS14050	SM00363	S4 RNA-binding domain
CFN60_RS14070	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN60_RS14090	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS14095	SM00830	Chorismate mutase type II
CFN60_RS14120	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS14120	SM00843	CFN60_RS14120
CFN60_RS14155	SM00919	Malic enzyme, NAD binding domain
CFN60_RS14155	SM01274	CFN60_RS14155
CFN60_RS14160	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS14180	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CFN60_RS14215	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS14220	SM00420	helix_turn_helix, Deoxyribose operon repressor
CFN60_RS14225	SM00363	S4 RNA-binding domain
CFN60_RS14250	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS14280	SM00450	Rhodanese Homology Domain
CFN60_RS14295	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN60_RS14295	SM00091	PAS domain
CFN60_RS14315	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS14320	SM00387	Histidine kinase-like ATPases
CFN60_RS14325	SM00448	cheY-homologous receiver domain
CFN60_RS14325	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS14335	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS14355	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS14360	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS14370	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN60_RS14440	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS14480	SM01234	CFN60_RS14480
CFN60_RS14485	SM00947	Carbonic anhydrase
CFN60_RS14520	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS14530	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CFN60_RS14695	SM00244	prohibitin homologues
CFN60_RS14740	SM00047	Lysozyme subfamily 2
CFN60_RS14785	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN60_RS14785	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS14785	SM00319	Homologues of the ligand binding domain of Tar
CFN60_RS14790	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN60_RS14790	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS14790	SM00319	Homologues of the ligand binding domain of Tar
CFN60_RS14795	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN60_RS14795	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS14795	SM00319	Homologues of the ligand binding domain of Tar
CFN60_RS14800	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN60_RS14800	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS14800	SM00319	Homologues of the ligand binding domain of Tar
CFN60_RS14825	SM00642	Alpha-amylase domain
CFN60_RS14830	SM01091	Transporter associated domain
CFN60_RS14900	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN60_RS14910	SM00344	helix_turn_helix ASNC type
CFN60_RS14930	SM00387	Histidine kinase-like ATPases
CFN60_RS14930	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS14935	SM01298	CFN60_RS14935
CFN60_RS14940	SM00479	CFN60_RS14940
CFN60_RS14965	SM00091	PAS domain
CFN60_RS14965	SM00387	Histidine kinase-like ATPases
CFN60_RS14970	SM00448	cheY-homologous receiver domain
CFN60_RS14980	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS15040	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS15040	SM00448	cheY-homologous receiver domain
CFN60_RS15045	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN60_RS15045	SM00387	Histidine kinase-like ATPases
CFN60_RS15075	SM00052	Putative diguanylate phosphodiesterase
CFN60_RS15115	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN60_RS15160	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CFN60_RS15160	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CFN60_RS15170	SM00923	MbtH-like protein
CFN60_RS15175	SM00823	Phosphopantetheine attachment site
CFN60_RS15175	SM00824	Thioesterase
CFN60_RS15195	SM00822	CFN60_RS15195
CFN60_RS15255	SM01240	CFN60_RS15255
CFN60_RS15270	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS15385	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN60_RS15430	SM00028	Tetratricopeptide repeats
CFN60_RS15465	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS15470	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS15470	SM00866	CFN60_RS15470
CFN60_RS15500	SM00422	helix_turn_helix, mercury resistance
CFN60_RS15510	SM00752	Horizontally Transferred TransMembrane Domain
CFN60_RS15525	SM00465	GIY-YIG type nucleases (URI domain)
CFN60_RS15580	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS15605	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS15605	SM00930	CFN60_RS15605
CFN60_RS15620	SM00493	CFN60_RS15620
CFN60_RS15675	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS15705	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS15730	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN60_RS15735	SM00448	cheY-homologous receiver domain
CFN60_RS15735	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS15740	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS15740	SM00387	Histidine kinase-like ATPases
CFN60_RS15740	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS15780	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS15780	SM00448	cheY-homologous receiver domain
CFN60_RS15785	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS15785	SM00387	Histidine kinase-like ATPases
CFN60_RS15820	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS15845	SM00387	Histidine kinase-like ATPases
CFN60_RS15845	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS15850	SM00448	cheY-homologous receiver domain
CFN60_RS15850	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS15870	SM00835	Cupin
CFN60_RS15880	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS15910	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS16035	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS16035	SM00448	cheY-homologous receiver domain
CFN60_RS16045	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS16160	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS16175	SM00062	Bacterial periplasmic substrate-binding proteins
CFN60_RS16180	SM00062	Bacterial periplasmic substrate-binding proteins
CFN60_RS16220	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN60_RS16220	SM00357	Cold shock protein domain
CFN60_RS16220	SM00955	CFN60_RS16220
CFN60_RS16235	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS16240	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS16245	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS16255	SM00387	Histidine kinase-like ATPases
CFN60_RS16255	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS16260	SM00448	cheY-homologous receiver domain
CFN60_RS16260	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS16275	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS16295	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN60_RS16295	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS16320	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN60_RS16320	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS16355	SM01192	CFN60_RS16355
CFN60_RS16355	SM01193	CFN60_RS16355
CFN60_RS16380	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CFN60_RS16395	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS16455	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS16455	SM00895	CFN60_RS16455
CFN60_RS16550	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS16630	SM00640	Glycosyl hydrolases family 32
CFN60_RS16640	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS16655	SM00642	Alpha-amylase domain
CFN60_RS16685	SM00642	Alpha-amylase domain
CFN60_RS16690	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS16710	SM00947	Carbonic anhydrase
CFN60_RS16770	SM00028	Tetratricopeptide repeats
CFN60_RS16775	SM00387	Histidine kinase-like ATPases
CFN60_RS16775	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS16780	SM00448	cheY-homologous receiver domain
CFN60_RS16780	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS16790	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS16870	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS16870	SM00866	CFN60_RS16870
CFN60_RS16910	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS16915	SM00487	DEAD-like helicases superfamily
CFN60_RS16915	SM00490	helicase superfamily c-terminal domain
CFN60_RS16955	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS16960	SM00823	Phosphopantetheine attachment site
CFN60_RS16965	SM00823	Phosphopantetheine attachment site
CFN60_RS16985	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN60_RS16995	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN60_RS16995	SM00245	tail specific protease
CFN60_RS17000	SM00710	Parallel beta-helix repeats
CFN60_RS17000	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
CFN60_RS17010	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS17030	SM00957	SecA DEAD-like domain
CFN60_RS17030	SM00958	SecA preprotein cross-linking domain
CFN60_RS17115	SM00487	DEAD-like helicases superfamily
CFN60_RS17115	SM00490	helicase superfamily c-terminal domain
CFN60_RS17125	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS17125	SM00448	cheY-homologous receiver domain
CFN60_RS17130	SM00387	Histidine kinase-like ATPases
CFN60_RS17170	SM00984	UDP binding domain
CFN60_RS17190	SM00646	CFN60_RS17190
CFN60_RS17220	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS17255	SM00047	Lysozyme subfamily 2
CFN60_RS17255	SM00287	Bacterial SH3 domain homologues
CFN60_RS17315	SM00854	Bacterial capsule synthesis protein PGA_cap
CFN60_RS17350	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS17365	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS17380	SM00287	Bacterial SH3 domain homologues
CFN60_RS17430	SM00903	Flavin reductase like domain
CFN60_RS17445	SM00344	helix_turn_helix ASNC type
CFN60_RS17525	SM00984	UDP binding domain
CFN60_RS17560	SM00487	DEAD-like helicases superfamily
CFN60_RS17560	SM00490	helicase superfamily c-terminal domain
CFN60_RS17570	SM00420	helix_turn_helix, Deoxyribose operon repressor
CFN60_RS17570	SM01134	CFN60_RS17570
CFN60_RS17600	SM00028	Tetratricopeptide repeats
CFN60_RS17625	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS17655	SM00938	Nitrogen regulatory protein P-II
CFN60_RS17665	SM00014	Acid phosphatase homologues
CFN60_RS17695	SM00155	Phospholipase D. Active site motifs.
CFN60_RS17745	SM00028	Tetratricopeptide repeats
CFN60_RS17750	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN60_RS17765	SM00327	von Willebrand factor (vWF) type A domain
CFN60_RS17770	SM00327	von Willebrand factor (vWF) type A domain
CFN60_RS17805	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS17865	SM00226	Low molecular weight phosphatase family
CFN60_RS17905	SM00937	CFN60_RS17905
CFN60_RS17925	SM00919	Malic enzyme, NAD binding domain
CFN60_RS17925	SM01274	CFN60_RS17925
CFN60_RS17940	SM00357	Cold shock protein domain
CFN60_RS17940	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS17940	SM00959	Rho termination factor, N-terminal domain
CFN60_RS17965	SM00448	cheY-homologous receiver domain
CFN60_RS17990	SM00155	Phospholipase D. Active site motifs.
CFN60_RS18005	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS18010	SM00155	Phospholipase D. Active site motifs.
CFN60_RS18035	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CFN60_RS18050	SM00100	Cyclic nucleotide-monophosphate binding domain
CFN60_RS18050	SM00419	helix_turn_helix, cAMP Regulatory protein
CFN60_RS18060	SM00836	DALR anticodon binding domain
CFN60_RS18060	SM01016	Arginyl tRNA synthetase N terminal dom
CFN60_RS18070	SM00028	Tetratricopeptide repeats
CFN60_RS18080	SM00530	Helix-turn-helix XRE-family like proteins 
CFN60_RS18110	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS18150	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS18165	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN60_RS18190	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS18305	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CFN60_RS18310	SM00387	Histidine kinase-like ATPases
CFN60_RS18310	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS18315	SM00448	cheY-homologous receiver domain
CFN60_RS18315	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS18330	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS18365	SM00858	CFN60_RS18365
CFN60_RS18410	SM00986	Uracil DNA glycosylase superfamily
CFN60_RS18410	SM00987	UreE urease accessory protein, C-terminal domain 
CFN60_RS18445	SM00640	Glycosyl hydrolases family 32
CFN60_RS18455	SM01061	CAT RNA binding domain
CFN60_RS18600	SM00422	helix_turn_helix, mercury resistance
CFN60_RS18610	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CFN60_RS18635	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS18640	SM00363	S4 RNA-binding domain
CFN60_RS18645	SM00954	Region found in RelA / SpoT proteins
CFN60_RS18740	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CFN60_RS18785	SM01060	CFN60_RS18785
CFN60_RS18805	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS18810	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS18835	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS18900	SM01060	CFN60_RS18900
CFN60_RS18915	SM01061	CAT RNA binding domain
CFN60_RS18925	SM00487	DEAD-like helicases superfamily
CFN60_RS18925	SM00490	helicase superfamily c-terminal domain
CFN60_RS18965	SM00656	CFN60_RS18965
CFN60_RS18980	SM00487	DEAD-like helicases superfamily
CFN60_RS18980	SM00490	helicase superfamily c-terminal domain
CFN60_RS19025	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CFN60_RS19035	SM01133	CFN60_RS19035
CFN60_RS19090	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS19095	SM00387	Histidine kinase-like ATPases
CFN60_RS19100	SM00448	cheY-homologous receiver domain
CFN60_RS19100	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS19105	SM00387	Histidine kinase-like ATPases
CFN60_RS19105	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS19110	SM00448	cheY-homologous receiver domain
CFN60_RS19110	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS19115	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS19180	SM00420	helix_turn_helix, Deoxyribose operon repressor
CFN60_RS19180	SM01134	CFN60_RS19180
CFN60_RS19195	SM00387	Histidine kinase-like ATPases
CFN60_RS19210	SM00421	helix_turn_helix, Lux Regulon
CFN60_RS19210	SM00448	cheY-homologous receiver domain
CFN60_RS19240	SM00564	beta-propeller repeat
CFN60_RS19250	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CFN60_RS19300	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CFN60_RS19305	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CFN60_RS19385	SM00028	Tetratricopeptide repeats
CFN60_RS19410	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CFN60_RS19415	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS19420	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CFN60_RS19425	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS19445	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS19445	SM00387	Histidine kinase-like ATPases
CFN60_RS19445	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS19450	SM00448	cheY-homologous receiver domain
CFN60_RS19450	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS19460	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN60_RS19465	SM00849	Metallo-beta-lactamase superfamily
CFN60_RS19480	SM00091	PAS domain
CFN60_RS19480	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN60_RS19480	SM00387	Histidine kinase-like ATPases
CFN60_RS19480	SM00388	His Kinase A (phosphoacceptor) domain
CFN60_RS19485	SM00448	cheY-homologous receiver domain
CFN60_RS19485	SM00862	Transcriptional regulatory protein, C terminal
CFN60_RS19515	SM00788	Adenylosuccinate synthetase
CFN60_RS19525	SM00382	ATPases associated with a variety of cellular activities
CFN60_RS19585	SM00267	diguanylate cyclase
CFN60_RS19610	SM01131	CFN60_RS19610
CFN60_RS19625	SM00640	Glycosyl hydrolases family 32
CFN60_RS19630	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS19630	SM00895	CFN60_RS19630
CFN60_RS19660	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS19670	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN60_RS19725	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN60_RS19735	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN60_RS19765	SM00354	helix_turn _helix lactose operon repressor
CFN60_RS19780	SM00342	helix_turn_helix, arabinose operon control protein
CFN60_RS19805	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CFN60_RS19830	SM00470	ParB-like nuclease domain
CFN60_RS19840	SM00470	ParB-like nuclease domain
CFN60_RS19850	SM01228	CFN60_RS19850
CFN60_RS19860	SM00393	Putative single-stranded nucleic acids-binding domain
CFN60_RS19860	SM01245	CFN60_RS19860
CFN60_RS19905	SM00028	Tetratricopeptide repeats
