locus-tag class description NYR48_RS00005 PF00308 Bacterial dnaA protein NYR48_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix NYR48_RS00005 PF11638 DnaA N-terminal domain NYR48_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NYR48_RS00010 PF02767 DNA polymerase III beta subunit, central domain NYR48_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NYR48_RS00020 PF02463 RecF/RecN/SMC N terminal domain NYR48_RS00025 PF04025 Domain of unknown function (DUF370) NYR48_RS00030 PF00204 DNA gyrase B NYR48_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus NYR48_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS00030 PF01751 Toprim domain NYR48_RS00035 PF03989 DNA gyrase C-terminal domain, beta-propeller NYR48_RS00035 PF00521 DNA gyrase/topoisomerase IV, subunit A NYR48_RS00065 PF14175 YaaC-like Protein NYR48_RS00070 PF00571 CBS domain NYR48_RS00070 PF00478 IMP dehydrogenase / GMP reductase domain NYR48_RS00075 PF07943 Penicillin-binding protein 5, C-terminal domain NYR48_RS00075 PF00768 D-alanyl-D-alanine carboxypeptidase NYR48_RS00080 PF01680 SOR/SNZ family NYR48_RS00085 PF01174 SNO glutamine amidotransferase family NYR48_RS00090 PF02403 Seryl-tRNA synthetase N-terminal domain NYR48_RS00090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NYR48_RS00095 PF02595 Glycerate kinase family NYR48_RS00105 PF01712 Deoxynucleoside kinase NYR48_RS00110 PF01712 Deoxynucleoside kinase NYR48_RS00115 PF00704 Glycosyl hydrolases family 18 NYR48_RS00115 PF01476 LysM domain NYR48_RS00120 PF00857 Isochorismatase family NYR48_RS00125 PF14437 MafB19-like deaminase NYR48_RS00135 PF12169 DNA polymerase III subunits gamma and tau domain III NYR48_RS00140 PF02575 YbaB/EbfC DNA-binding family NYR48_RS00145 PF02132 RecR protein NYR48_RS00145 PF13662 Toprim domain NYR48_RS00150 PF10704 Protein of unknown function (DUF2508) NYR48_RS00155 PF07441 SigmaK-factor processing regulatory protein BofA NYR48_RS00185 PF10764 Inhibitor of sigma-G Gin NYR48_RS00190 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein NYR48_RS00195 PF05816 Toxic anion resistance protein (TelA) NYR48_RS00200 PF01276 Orn/Lys/Arg decarboxylase, major domain NYR48_RS00200 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NYR48_RS00205 PF02223 Thymidylate kinase NYR48_RS00210 PF06153 Cyclic-di-AMP receptor NYR48_RS00215 PF03885 Protein of unknown function (DUF327) NYR48_RS00220 PF09115 DNA polymerase III, delta subunit, C terminal NYR48_RS00225 PF04468 PSP1 C-terminal conserved region NYR48_RS00230 PF06156 Initiation control protein YabA NYR48_RS00235 PF05175 Methyltransferase small domain NYR48_RS00240 PF01541 GIY-YIG catalytic domain NYR48_RS00245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NYR48_RS00250 PF18277 AbrB C-terminal domain NYR48_RS00250 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NYR48_RS00255 PF08264 Anticodon-binding domain of tRNA NYR48_RS00255 PF09334 tRNA synthetases class I (M) NYR48_RS00255 PF01588 Putative tRNA binding domain NYR48_RS00260 PF01026 TatD related DNase NYR48_RS00265 PF06725 3D domain NYR48_RS00265 PF03990 G5-linked-Ubiquitin-like domain NYR48_RS00265 PF07501 G5 domain NYR48_RS00270 PF13331 Domain of unknown function (DUF4093) NYR48_RS00270 PF13662 Toprim domain NYR48_RS00275 PF00398 Ribosomal RNA adenine dimethylase NYR48_RS00280 PF05582 YabG peptidase U57 NYR48_RS00285 PF06257 Biofilm formation stimulator VEG NYR48_RS00290 PF00269 Small, acid-soluble spore proteins, alpha/beta type NYR48_RS00295 PF08544 GHMP kinases C terminal NYR48_RS00295 PF00288 GHMP kinases N terminal domain NYR48_RS00300 PF00156 Phosphoribosyl transferase domain NYR48_RS00300 PF09182 Bacterial purine repressor, N-terminal NYR48_RS00305 PF01042 Endoribonuclease L-PSP NYR48_RS00310 PF04026 SpoVG NYR48_RS00315 PF00132 Bacterial transferase hexapeptide (six repeats) NYR48_RS00315 PF00483 Nucleotidyl transferase NYR48_RS00320 PF14572 Phosphoribosyl synthetase-associated domain NYR48_RS00320 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NYR48_RS00325 PF14693 Ribosomal protein TL5, C-terminal domain NYR48_RS00325 PF01386 Ribosomal L25p family NYR48_RS00330 PF01195 Peptidyl-tRNA hydrolase NYR48_RS00335 PF10955 Protein of unknown function (DUF2757) NYR48_RS00340 PF02559 CarD-like/TRCF domain NYR48_RS00340 PF00270 DEAD/DEAH box helicase NYR48_RS00340 PF00271 Helicase conserved C-terminal domain NYR48_RS00340 PF03461 TRCF domain NYR48_RS00340 PF17757 UvrB interaction domain NYR48_RS00345 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NYR48_RS00345 PF15714 Stage V sporulation protein T C-terminal, transcription factor NYR48_RS00350 PF01943 Polysaccharide biosynthesis protein NYR48_RS00350 PF14667 Polysaccharide biosynthesis C-terminal domain NYR48_RS00355 PF03819 MazG nucleotide pyrophosphohydrolase domain NYR48_RS00355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NYR48_RS00360 PF01479 S4 domain NYR48_RS00365 PF07873 YabP family NYR48_RS00370 PF09578 Spore cortex protein YabQ (Spore_YabQ) NYR48_RS00375 PF04977 Septum formation initiator NYR48_RS00380 PF00575 S1 RNA binding domain NYR48_RS00395 PF07228 Stage II sporulation protein E (SpoIIE) NYR48_RS00400 PF00092 von Willebrand factor type A domain NYR48_RS00405 PF00069 Protein kinase domain NYR48_RS00410 PF01171 PP-loop family NYR48_RS00410 PF09179 TilS substrate binding domain NYR48_RS00410 PF11734 TilS substrate C-terminal domain NYR48_RS00415 PF00156 Phosphoribosyl transferase domain NYR48_RS00420 PF00004 ATPase family associated with various cellular activities (AAA) NYR48_RS00420 PF17862 AAA+ lid domain NYR48_RS00420 PF06480 FtsH Extracellular NYR48_RS00420 PF01434 Peptidase family M41 NYR48_RS00425 PF03309 Type III pantothenate kinase NYR48_RS00430 PF01430 Hsp33 protein NYR48_RS00435 PF13145 PPIC-type PPIASE domain NYR48_RS00440 PF00291 Pyridoxal-phosphate dependent enzyme NYR48_RS00445 PF04715 Anthranilate synthase component I, N terminal region NYR48_RS00445 PF00425 chorismate binding enzyme NYR48_RS00450 PF00117 Glutamine amidotransferase class-I NYR48_RS00455 PF01063 Amino-transferase class IV NYR48_RS00460 PF00809 Pterin binding enzyme NYR48_RS00465 PF02152 Dihydroneopterin aldolase NYR48_RS00470 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NYR48_RS00475 PF01381 Helix-turn-helix NYR48_RS00480 PF01207 Dihydrouridine synthase (Dus) NYR48_RS00485 PF00152 tRNA synthetases class II (D, K and N) NYR48_RS00485 PF01336 OB-fold nucleic acid binding domain NYR48_RS00565 PF05848 CtsR N-terminal HTH domain NYR48_RS00565 PF17727 CtsR C-terminal dimerization domain NYR48_RS00570 PF02151 UvrB/uvrC motif NYR48_RS00575 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain NYR48_RS00580 PF00004 ATPase family associated with various cellular activities (AAA) NYR48_RS00580 PF07724 AAA domain (Cdc48 subfamily) NYR48_RS00580 PF17871 AAA lid domain NYR48_RS00580 PF02861 Clp amino terminal domain, pathogenicity island component NYR48_RS00580 PF10431 C-terminal, D2-small domain, of ClpB protein NYR48_RS00585 PF18073 Rubredoxin metal binding domain NYR48_RS00590 PF02457 DisA bacterial checkpoint controller nucleotide-binding NYR48_RS00590 PF10635 DisA bacterial checkpoint controller linker region NYR48_RS00600 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NYR48_RS00605 PF02542 YgbB family NYR48_RS00610 PF00749 tRNA synthetases class I (E and Q), catalytic domain NYR48_RS00615 PF00132 Bacterial transferase hexapeptide (six repeats) NYR48_RS00615 PF06426 Serine acetyltransferase, N-terminal NYR48_RS00620 PF01406 tRNA synthetases class I (C) catalytic domain NYR48_RS00620 PF09190 DALR domain NYR48_RS00625 PF00636 Ribonuclease III domain NYR48_RS00630 PF00588 SpoU rRNA Methylase family NYR48_RS00630 PF08032 RNA 2'-O ribose methyltransferase substrate binding NYR48_RS00635 PF05991 YacP-like NYN domain NYR48_RS00640 PF04542 Sigma-70 region 2 NYR48_RS00640 PF08281 Sigma-70, region 4 NYR48_RS00645 PF00471 Ribosomal protein L33 NYR48_RS00650 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NYR48_RS00655 PF00467 KOW motif NYR48_RS00655 PF02357 Transcription termination factor nusG NYR48_RS00660 PF00298 Ribosomal protein L11, RNA binding domain NYR48_RS00660 PF03946 Ribosomal protein L11, N-terminal domain NYR48_RS00665 PF00687 Ribosomal protein L1p/L10e family NYR48_RS00670 PF00466 Ribosomal protein L10 NYR48_RS00675 PF16320 Ribosomal protein L7/L12 dimerisation domain NYR48_RS00675 PF00542 Ribosomal protein L7/L12 C-terminal domain NYR48_RS00680 PF05175 Methyltransferase small domain NYR48_RS00685 PF04563 RNA polymerase beta subunit NYR48_RS00685 PF04561 RNA polymerase Rpb2, domain 2 NYR48_RS00685 PF04565 RNA polymerase Rpb2, domain 3 NYR48_RS00685 PF10385 RNA polymerase beta subunit external 1 domain NYR48_RS00685 PF00562 RNA polymerase Rpb2, domain 6 NYR48_RS00685 PF04560 RNA polymerase Rpb2, domain 7 NYR48_RS00690 PF04997 RNA polymerase Rpb1, domain 1 NYR48_RS00690 PF00623 RNA polymerase Rpb1, domain 2 NYR48_RS00690 PF04983 RNA polymerase Rpb1, domain 3 NYR48_RS00690 PF05000 RNA polymerase Rpb1, domain 4 NYR48_RS00690 PF04998 RNA polymerase Rpb1, domain 5 NYR48_RS00695 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NYR48_RS00700 PF00164 Ribosomal protein S12/S23 NYR48_RS00705 PF00177 Ribosomal protein S7p/S5e NYR48_RS00710 PF00679 Elongation factor G C-terminus NYR48_RS00710 PF14492 Elongation Factor G, domain II NYR48_RS00710 PF03764 Elongation factor G, domain IV NYR48_RS00710 PF00009 Elongation factor Tu GTP binding domain NYR48_RS00710 PF03144 Elongation factor Tu domain 2 NYR48_RS00715 PF00009 Elongation factor Tu GTP binding domain NYR48_RS00715 PF03144 Elongation factor Tu domain 2 NYR48_RS00715 PF03143 Elongation factor Tu C-terminal domain NYR48_RS00720 PF12146 Serine aminopeptidase, S33 NYR48_RS00725 PF00338 Ribosomal protein S10p/S20e NYR48_RS00730 PF00297 Ribosomal protein L3 NYR48_RS00735 PF00573 Ribosomal protein L4/L1 family NYR48_RS00740 PF00276 Ribosomal protein L23 NYR48_RS00745 PF00181 Ribosomal Proteins L2, RNA binding domain NYR48_RS00745 PF03947 Ribosomal Proteins L2, C-terminal domain NYR48_RS00750 PF00203 Ribosomal protein S19 NYR48_RS00755 PF00237 Ribosomal protein L22p/L17e NYR48_RS00760 PF07650 KH domain NYR48_RS00760 PF00189 Ribosomal protein S3, C-terminal domain NYR48_RS00765 PF00252 Ribosomal protein L16p/L10e NYR48_RS00770 PF00831 Ribosomal L29 protein NYR48_RS00775 PF00366 Ribosomal protein S17 NYR48_RS00780 PF00238 Ribosomal protein L14p/L23e NYR48_RS00785 PF00467 KOW motif NYR48_RS00785 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NYR48_RS00790 PF00281 Ribosomal protein L5 NYR48_RS00790 PF00673 ribosomal L5P family C-terminus NYR48_RS00795 PF00253 Ribosomal protein S14p/S29e NYR48_RS00800 PF00410 Ribosomal protein S8 NYR48_RS00805 PF00347 Ribosomal protein L6 NYR48_RS00810 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NYR48_RS00815 PF00333 Ribosomal protein S5, N-terminal domain NYR48_RS00815 PF03719 Ribosomal protein S5, C-terminal domain NYR48_RS00820 PF00327 Ribosomal protein L30p/L7e NYR48_RS00825 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NYR48_RS00830 PF00344 SecY translocase NYR48_RS00835 PF05191 Adenylate kinase, active site lid NYR48_RS00840 PF00557 Metallopeptidase family M24 NYR48_RS00850 PF01176 Translation initiation factor 1A / IF-1 NYR48_RS00855 PF00444 Ribosomal protein L36 NYR48_RS00860 PF00416 Ribosomal protein S13/S18 NYR48_RS00865 PF00411 Ribosomal protein S11 NYR48_RS00870 PF01000 RNA polymerase Rpb3/RpoA insert domain NYR48_RS00870 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NYR48_RS00870 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NYR48_RS00875 PF01196 Ribosomal protein L17 NYR48_RS00880 PF00005 ABC transporter NYR48_RS00885 PF00005 ABC transporter NYR48_RS00890 PF02361 Cobalt transport protein NYR48_RS00895 PF01416 tRNA pseudouridine synthase NYR48_RS00900 PF00572 Ribosomal protein L13 NYR48_RS00905 PF00380 Ribosomal protein S9/S16 NYR48_RS00910 PF08241 Methyltransferase domain NYR48_RS00915 PF05163 DinB family NYR48_RS00920 PF10730 Protein of unknown function (DUF2521) NYR48_RS00925 PF01520 N-acetylmuramoyl-L-alanine amidase NYR48_RS00930 PF10609 NUBPL iron-transfer P-loop NTPase NYR48_RS00935 PF17898 Spore germination GerD central core domain NYR48_RS00940 PF14089 KinB-signalling pathway activation in sporulation NYR48_RS00945 PF01522 Polysaccharide deacetylase NYR48_RS01005 PF07690 Major Facilitator Superfamily NYR48_RS01010 PF00202 Aminotransferase class-III NYR48_RS01020 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS01020 PF00107 Zinc-binding dehydrogenase NYR48_RS01025 PF01740 STAS domain NYR48_RS01025 PF00916 Sulfate permease family NYR48_RS01030 PF01758 Sodium Bile acid symporter family NYR48_RS01035 PF00756 Putative esterase NYR48_RS01040 PF01032 FecCD transport family NYR48_RS01045 PF01032 FecCD transport family NYR48_RS01050 PF01497 Periplasmic binding protein NYR48_RS01055 PF12833 Helix-turn-helix domain NYR48_RS01055 PF01497 Periplasmic binding protein NYR48_RS01060 PF07075 Protein of unknown function (DUF1343) NYR48_RS01065 PF01915 Glycosyl hydrolase family 3 C-terminal domain NYR48_RS01065 PF00933 Glycosyl hydrolase family 3 N terminal domain NYR48_RS01070 PF00144 Beta-lactamase NYR48_RS01075 PF00367 phosphotransferase system, EIIB NYR48_RS01075 PF02378 Phosphotransferase system, EIIC NYR48_RS01080 PF01380 SIS domain NYR48_RS01090 PF04463 Protein of unknown function (DUF523) NYR48_RS01120 PF04542 Sigma-70 region 2 NYR48_RS01120 PF08281 Sigma-70, region 4 NYR48_RS01125 PF13490 Putative zinc-finger NYR48_RS01130 PF02457 DisA bacterial checkpoint controller nucleotide-binding NYR48_RS01135 PF07949 YbbR-like protein NYR48_RS01140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NYR48_RS01140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NYR48_RS01140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NYR48_RS01140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NYR48_RS01145 PF01380 SIS domain NYR48_RS01150 PF00005 ABC transporter NYR48_RS01165 PF16226 Domain of unknown function (DUF4885) NYR48_RS01170 PF00248 Aldo/keto reductase family NYR48_RS01175 PF04172 LrgB-like family NYR48_RS01180 PF03788 LrgA family NYR48_RS01185 PF01047 MarR family NYR48_RS01190 PF00324 Amino acid permease NYR48_RS01195 PF13419 Haloacid dehalogenase-like hydrolase NYR48_RS01200 PF07730 Histidine kinase NYR48_RS01205 PF00196 Bacterial regulatory proteins, luxR family NYR48_RS01205 PF00072 Response regulator receiver domain NYR48_RS01210 PF00005 ABC transporter NYR48_RS01235 PF17334 Minor curli fiber component A NYR48_RS01250 PF13520 Amino acid permease NYR48_RS01255 PF03009 Glycerophosphoryl diester phosphodiesterase family NYR48_RS01260 PF07690 Major Facilitator Superfamily NYR48_RS01265 PF10852 Protein of unknown function (DUF2651) NYR48_RS01270 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal NYR48_RS01270 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal NYR48_RS01280 PF01471 Putative peptidoglycan binding domain NYR48_RS01280 PF08924 Domain of unknown function (DUF1906) NYR48_RS01295 PF00465 Iron-containing alcohol dehydrogenase NYR48_RS01300 PF02222 ATP-grasp domain NYR48_RS01305 PF01066 CDP-alcohol phosphatidyltransferase NYR48_RS01310 PF09335 SNARE associated Golgi protein NYR48_RS01315 PF02666 Phosphatidylserine decarboxylase NYR48_RS01325 PF00581 Rhodanese-like domain NYR48_RS01325 PF12368 Rhodanase C-terminal NYR48_RS01325 PF17773 UPF0176 acylphosphatase like domain NYR48_RS01330 PF00375 Sodium:dicarboxylate symporter family NYR48_RS01335 PF01063 Amino-transferase class IV NYR48_RS01340 PF00324 Amino acid permease NYR48_RS01345 PF02574 Homocysteine S-methyltransferase NYR48_RS01350 PF01235 Sodium:alanine symporter family NYR48_RS01355 PF04960 Glutaminase NYR48_RS01360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS01365 PF00072 Response regulator receiver domain NYR48_RS01365 PF08664 YcbB domain NYR48_RS01375 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein NYR48_RS01385 PF16916 Dimerisation domain of Zinc Transporter NYR48_RS01385 PF01545 Cation efflux family NYR48_RS01390 PF00881 Nitroreductase family NYR48_RS01395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR48_RS01400 PF07681 DoxX NYR48_RS01405 PF00085 Thioredoxin NYR48_RS01410 PF10710 Protein of unknown function (DUF2512) NYR48_RS01415 PF07486 Cell Wall Hydrolase NYR48_RS01420 PF09423 PhoD-like phosphatase NYR48_RS01420 PF16655 PhoD-like phosphatase, N-terminal domain NYR48_RS01425 PF02416 mttA/Hcf106 family NYR48_RS01430 PF00902 Sec-independent protein translocase protein (TatC) NYR48_RS01435 PF01470 Pyroglutamyl peptidase NYR48_RS01440 PF00266 Aminotransferase class-V NYR48_RS01445 PF07690 Major Facilitator Superfamily NYR48_RS01450 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS01455 PF00710 Asparaginase, N-terminal NYR48_RS01455 PF17763 Glutaminase/Asparaginase C-terminal domain NYR48_RS01460 PF01674 Lipase (class 2) NYR48_RS01465 PF05225 helix-turn-helix, Psq domain NYR48_RS01465 PF02810 SEC-C motif NYR48_RS01470 PF00248 Aldo/keto reductase family NYR48_RS01475 PF17118 Domain of unknown function (DUF5105) NYR48_RS01475 PF11611 Domain of unknown function (DUF4352) NYR48_RS01480 PF16244 Domain of unknown function (DUF4901) NYR48_RS01485 PF16244 Domain of unknown function (DUF4901) NYR48_RS01495 PF18801 response regulator aspartate phosphatase H, N terminal NYR48_RS01505 PF00128 Alpha amylase, catalytic domain NYR48_RS01515 PF10400 Virulence activator alpha C-term NYR48_RS01515 PF03551 Transcriptional regulator PadR-like family NYR48_RS01520 PF01297 Zinc-uptake complex component A periplasmic NYR48_RS01525 PF00005 ABC transporter NYR48_RS01530 PF00950 ABC 3 transport family NYR48_RS01535 PF00296 Luciferase-like monooxygenase NYR48_RS01540 PF02342 TerD domain NYR48_RS01545 PF02342 TerD domain NYR48_RS01550 PF02342 TerD domain NYR48_RS01555 PF03741 Integral membrane protein TerC family NYR48_RS01560 PF14266 Putative component of 'biosynthetic module' NYR48_RS01565 PF05816 Toxic anion resistance protein (TelA) NYR48_RS01570 PF07690 Major Facilitator Superfamily NYR48_RS01575 PF00571 CBS domain NYR48_RS01575 PF00005 ABC transporter NYR48_RS01580 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS01585 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NYR48_RS01590 PF07687 Peptidase dimerisation domain NYR48_RS01590 PF01546 Peptidase family M20/M25/M40 NYR48_RS01595 PF03606 C4-dicarboxylate anaerobic carrier NYR48_RS01605 PF16738 Starch-binding module 26 NYR48_RS01605 PF00128 Alpha amylase, catalytic domain NYR48_RS01610 PF00056 lactate/malate dehydrogenase, NAD binding domain NYR48_RS01610 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NYR48_RS01615 PF07690 Major Facilitator Superfamily NYR48_RS01620 PF01047 MarR family NYR48_RS01625 PF01810 LysE type translocator NYR48_RS01630 PF08892 YqcI/YcgG family NYR48_RS01635 PF00324 Amino acid permease NYR48_RS01640 PF09347 Domain of unknown function (DUF1989) NYR48_RS01645 PF02540 NAD synthase NYR48_RS01650 PF12197 Bacillus cereus group antimicrobial protein NYR48_RS01660 PF01261 Xylose isomerase-like TIM barrel NYR48_RS01665 PF07690 Major Facilitator Superfamily NYR48_RS01670 PF01202 Shikimate kinase NYR48_RS01680 PF05448 Acetyl xylan esterase (AXE1) NYR48_RS01685 PF10127 RNA repair pathway DNA polymerase beta family NYR48_RS01690 PF01619 Proline dehydrogenase NYR48_RS01695 PF00171 Aldehyde dehydrogenase family NYR48_RS01700 PF00474 Sodium:solute symporter family NYR48_RS01705 PF13556 PucR C-terminal helix-turn-helix domain NYR48_RS01705 PF17853 GGDEF-like domain NYR48_RS01710 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS01715 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NYR48_RS01720 PF00355 Rieske [2Fe-2S] domain NYR48_RS01725 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS01725 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NYR48_RS01725 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NYR48_RS01725 PF04324 BFD-like [2Fe-2S] binding domain NYR48_RS01725 PF18267 Rubredoxin NAD+ reductase C-terminal domain NYR48_RS01730 PF01568 Molydopterin dinucleotide binding domain NYR48_RS01730 PF00384 Molybdopterin oxidoreductase NYR48_RS01730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NYR48_RS01735 PF18267 Rubredoxin NAD+ reductase C-terminal domain NYR48_RS01735 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS01735 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NYR48_RS01735 PF04324 BFD-like [2Fe-2S] binding domain NYR48_RS01740 PF07690 Major Facilitator Superfamily NYR48_RS01745 PF02492 CobW/HypB/UreG, nucleotide-binding domain NYR48_RS01745 PF07683 Cobalamin synthesis protein cobW C-terminal domain NYR48_RS01750 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS01750 PF00107 Zinc-binding dehydrogenase NYR48_RS01750 PF13823 Alcohol dehydrogenase GroES-associated NYR48_RS01755 PF06271 RDD family NYR48_RS01760 PF10925 Protein of unknown function (DUF2680) NYR48_RS01765 PF00232 Glycosyl hydrolase family 1 NYR48_RS01770 PF11033 Competence protein J (ComJ) NYR48_RS01775 PF14040 Deoxyribonuclease NucA/NucB NYR48_RS01780 PF01380 SIS domain NYR48_RS01785 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NYR48_RS01790 PF01638 HxlR-like helix-turn-helix NYR48_RS01795 PF00550 Phosphopantetheine attachment site NYR48_RS01795 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS01795 PF00501 AMP-binding enzyme NYR48_RS01795 PF00668 Condensation domain NYR48_RS01815 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS01815 PF00668 Condensation domain NYR48_RS01815 PF00550 Phosphopantetheine attachment site NYR48_RS01815 PF00501 AMP-binding enzyme NYR48_RS01820 PF00501 AMP-binding enzyme NYR48_RS01820 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS01820 PF00668 Condensation domain NYR48_RS01820 PF00550 Phosphopantetheine attachment site NYR48_RS01820 PF00975 Thioesterase domain NYR48_RS01825 PF00975 Thioesterase domain NYR48_RS01830 PF07685 CobB/CobQ-like glutamine amidotransferase domain NYR48_RS01830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NYR48_RS01830 PF00155 Aminotransferase class I and II NYR48_RS01835 PF01648 4'-phosphopantetheinyl transferase superfamily NYR48_RS01845 PF00005 ABC transporter NYR48_RS01850 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS01855 PF00497 Bacterial extracellular solute-binding proteins, family 3 NYR48_RS01860 PF03466 LysR substrate binding domain NYR48_RS01860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS01865 PF02441 Flavoprotein NYR48_RS01870 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NYR48_RS01885 PF00854 POT family NYR48_RS01890 PF12708 Pectate lyase superfamily protein NYR48_RS01890 PF13229 Right handed beta helix region NYR48_RS01900 PF03323 Bacillus/Clostridium GerA spore germination protein NYR48_RS01905 PF05504 Spore germination B3/ GerAC like, C-terminal NYR48_RS01910 PF03845 Spore germination protein NYR48_RS01915 PF00296 Luciferase-like monooxygenase NYR48_RS01920 PF00583 Acetyltransferase (GNAT) family NYR48_RS01925 PF00497 Bacterial extracellular solute-binding proteins, family 3 NYR48_RS01930 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS01935 PF00005 ABC transporter NYR48_RS01940 PF01546 Peptidase family M20/M25/M40 NYR48_RS01940 PF07687 Peptidase dimerisation domain NYR48_RS01945 PF03972 MmgE/PrpD family NYR48_RS01955 PF00005 ABC transporter NYR48_RS01960 PF12704 MacB-like periplasmic core domain NYR48_RS01960 PF02687 FtsX-like permease family NYR48_RS01965 PF00072 Response regulator receiver domain NYR48_RS01965 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS01970 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS01970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS01970 PF00672 HAMP domain NYR48_RS01975 PF18801 response regulator aspartate phosphatase H, N terminal NYR48_RS01980 PF11131 Rap-phr extracellular signalling NYR48_RS01985 PF09680 Family of unknown function NYR48_RS01990 PF13840 ACT domain NYR48_RS01990 PF00696 Amino acid kinase family NYR48_RS01995 PF01032 FecCD transport family NYR48_RS02000 PF01032 FecCD transport family NYR48_RS02005 PF00005 ABC transporter NYR48_RS02010 PF01497 Periplasmic binding protein NYR48_RS02015 PF07690 Major Facilitator Superfamily NYR48_RS02020 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS02025 PF00881 Nitroreductase family NYR48_RS02030 PF03992 Antibiotic biosynthesis monooxygenase NYR48_RS02035 PF01022 Bacterial regulatory protein, arsR family NYR48_RS02040 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS02040 PF00155 Aminotransferase class I and II NYR48_RS02045 PF00202 Aminotransferase class-III NYR48_RS02050 PF00171 Aldehyde dehydrogenase family NYR48_RS02055 PF06800 Sugar transport protein NYR48_RS02065 PF07987 Domain of unkown function (DUF1775) NYR48_RS02070 PF13115 YtkA-like NYR48_RS02070 PF05425 Copper resistance protein D NYR48_RS02070 PF04234 CopC domain NYR48_RS02075 PF08220 DeoR-like helix-turn-helix domain NYR48_RS02075 PF05573 NosL NYR48_RS02085 PF02378 Phosphotransferase system, EIIC NYR48_RS02085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NYR48_RS02090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NYR48_RS02095 PF08125 Mannitol dehydrogenase C-terminal domain NYR48_RS02095 PF01232 Mannitol dehydrogenase Rossmann domain NYR48_RS02100 PF07977 FabA-like domain NYR48_RS02115 PF03746 LamB/YcsF family NYR48_RS02120 PF01566 Natural resistance-associated macrophage protein NYR48_RS02125 PF07286 Protein of unknown function (DUF1445) NYR48_RS02130 PF02682 Carboxyltransferase domain, subdomain C and D NYR48_RS02135 PF02626 Carboxyltransferase domain, subdomain A and B NYR48_RS02140 PF01614 Bacterial transcriptional regulator NYR48_RS02140 PF09339 IclR helix-turn-helix domain NYR48_RS02145 PF13472 GDSL-like Lipase/Acylhydrolase family NYR48_RS02150 PF13129 Protein of unknown function (DUF3953) NYR48_RS02155 PF03992 Antibiotic biosynthesis monooxygenase NYR48_RS02160 PF05223 NTF2-like N-terminal transpeptidase domain NYR48_RS02160 PF03717 Penicillin-binding Protein dimerisation domain NYR48_RS02160 PF00905 Penicillin binding protein transpeptidase domain NYR48_RS02165 PF00248 Aldo/keto reductase family NYR48_RS02170 PF08279 HTH domain NYR48_RS02170 PF05043 Mga helix-turn-helix domain NYR48_RS02170 PF00874 PRD domain NYR48_RS02170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NYR48_RS02170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NYR48_RS02175 PF00501 AMP-binding enzyme NYR48_RS02175 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS02190 PF13302 Acetyltransferase (GNAT) domain NYR48_RS02195 PF16242 Pyridoxamine 5'-phosphate oxidase like NYR48_RS02205 PF10997 Alternate to MurJ NYR48_RS02210 PF12823 Domain of unknown function (DUF3817) NYR48_RS02215 PF01037 Lrp/AsnC ligand binding domain NYR48_RS02220 PF01751 Toprim domain NYR48_RS02220 PF01131 DNA topoisomerase NYR48_RS02230 PF00990 Diguanylate cyclase, GGDEF domain NYR48_RS02235 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) NYR48_RS02245 PF03170 Bacterial cellulose synthase subunit NYR48_RS02250 PF13520 Amino acid permease NYR48_RS02255 PF00293 NUDIX domain NYR48_RS02260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NYR48_RS02260 PF00205 Thiamine pyrophosphate enzyme, central domain NYR48_RS02260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NYR48_RS02285 PF01566 Natural resistance-associated macrophage protein NYR48_RS02300 PF17314 Family of unknown function (DUF5360) NYR48_RS02305 PF00893 Small Multidrug Resistance protein NYR48_RS02310 PF12787 EcsC protein family NYR48_RS02315 PF00477 Small hydrophilic plant seed protein NYR48_RS02315 PF10685 Stress-induced bacterial acidophilic repeat motif NYR48_RS02320 PF07883 Cupin domain NYR48_RS02325 PF16291 Domain of unknown function (DUF4937 NYR48_RS02330 PF05067 Manganese containing catalase NYR48_RS02335 PF03480 Bacterial extracellular solute-binding protein, family 7 NYR48_RS02340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS02340 PF17203 Single cache domain 3 NYR48_RS02340 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NYR48_RS02345 PF08279 HTH domain NYR48_RS02345 PF00072 Response regulator receiver domain NYR48_RS02350 PF00375 Sodium:dicarboxylate symporter family NYR48_RS02355 PF01594 AI-2E family transporter NYR48_RS02360 PF00005 ABC transporter NYR48_RS02375 PF02770 Acyl-CoA dehydrogenase, middle domain NYR48_RS02375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NYR48_RS02375 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NYR48_RS02380 PF13040 Fur-regulated basic protein B NYR48_RS02390 PF16916 Dimerisation domain of Zinc Transporter NYR48_RS02390 PF01545 Cation efflux family NYR48_RS02395 PF00085 Thioredoxin NYR48_RS02400 PF07478 D-ala D-ala ligase C-terminus NYR48_RS02400 PF01820 D-ala D-ala ligase N-terminus NYR48_RS02405 PF02875 Mur ligase family, glutamate ligase domain NYR48_RS02405 PF08245 Mur ligase middle domain NYR48_RS02405 PF01225 Mur ligase family, catalytic domain NYR48_RS02410 PF00271 Helicase conserved C-terminal domain NYR48_RS02410 PF00270 DEAD/DEAH box helicase NYR48_RS02415 PF03703 Bacterial PH domain NYR48_RS02420 PF03703 Bacterial PH domain NYR48_RS02425 PF01694 Rhomboid family NYR48_RS02430 PF01648 4'-phosphopantetheinyl transferase superfamily NYR48_RS02440 PF01168 Alanine racemase, N-terminal domain NYR48_RS02440 PF00842 Alanine racemase, C-terminal domain NYR48_RS02445 PF01402 Ribbon-helix-helix protein, copG family NYR48_RS02450 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system NYR48_RS02455 PF08678 Rsbr N terminal NYR48_RS02455 PF01740 STAS domain NYR48_RS02460 PF01740 STAS domain NYR48_RS02465 PF13581 Histidine kinase-like ATPase domain NYR48_RS02470 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain NYR48_RS02470 PF07228 Stage II sporulation protein E (SpoIIE) NYR48_RS02475 PF01740 STAS domain NYR48_RS02480 PF13581 Histidine kinase-like ATPase domain NYR48_RS02485 PF04545 Sigma-70, region 4 NYR48_RS02485 PF04539 Sigma-70 region 3 NYR48_RS02485 PF04542 Sigma-70 region 2 NYR48_RS02490 PF07228 Stage II sporulation protein E (SpoIIE) NYR48_RS02495 PF16921 Tex protein YqgF-like domain NYR48_RS02495 PF09371 Tex-like protein N-terminal domain NYR48_RS02495 PF00575 S1 RNA binding domain NYR48_RS02495 PF17674 HHH domain NYR48_RS02505 PF10263 SprT-like family NYR48_RS02545 PF02525 Flavodoxin-like fold NYR48_RS02550 PF07366 SnoaL-like polyketide cyclase NYR48_RS02555 PF12706 Beta-lactamase superfamily domain NYR48_RS02560 PF01037 Lrp/AsnC ligand binding domain NYR48_RS02570 PF00561 alpha/beta hydrolase fold NYR48_RS02585 PF07690 Major Facilitator Superfamily NYR48_RS02590 PF07859 alpha/beta hydrolase fold NYR48_RS02595 PF02566 OsmC-like protein NYR48_RS02600 PF01047 MarR family NYR48_RS02605 PF14729 Domain of unknown function with cystatin-like fold (DUF4467) NYR48_RS02610 PF01575 MaoC like domain NYR48_RS02620 PF16193 AAA C-terminal domain NYR48_RS02620 PF00004 ATPase family associated with various cellular activities (AAA) NYR48_RS02620 PF12002 MgsA AAA+ ATPase C terminal NYR48_RS02625 PF02082 Transcriptional regulator NYR48_RS02630 PF13460 NAD(P)H-binding NYR48_RS02645 PF00313 'Cold-shock' DNA-binding domain NYR48_RS02650 PF02559 CarD-like/TRCF domain NYR48_RS02655 PF02583 Metal-sensitive transcriptional repressor NYR48_RS02660 PF13686 DsrE/DsrF/DrsH-like family NYR48_RS02670 PF00581 Rhodanese-like domain NYR48_RS02670 PF01206 Sulfurtransferase TusA NYR48_RS02680 PF01206 Sulfurtransferase TusA NYR48_RS02685 PF01925 Sulfite exporter TauE/SafE NYR48_RS02690 PF01177 Asp/Glu/Hydantoin racemase NYR48_RS02705 PF03466 LysR substrate binding domain NYR48_RS02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS02710 PF00206 Lyase NYR48_RS02710 PF10415 Fumarase C C-terminus NYR48_RS02715 PF01734 Patatin-like phospholipase NYR48_RS02725 PF07883 Cupin domain NYR48_RS02730 PF00291 Pyridoxal-phosphate dependent enzyme NYR48_RS02735 PF07729 FCD domain NYR48_RS02735 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS02740 PF01042 Endoribonuclease L-PSP NYR48_RS02750 PF07687 Peptidase dimerisation domain NYR48_RS02750 PF01546 Peptidase family M20/M25/M40 NYR48_RS02755 PF02311 AraC-like ligand binding domain NYR48_RS02755 PF12833 Helix-turn-helix domain NYR48_RS02760 PF07687 Peptidase dimerisation domain NYR48_RS02760 PF01546 Peptidase family M20/M25/M40 NYR48_RS02765 PF00155 Aminotransferase class I and II NYR48_RS02765 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS02770 PF07690 Major Facilitator Superfamily NYR48_RS02775 PF13344 Haloacid dehalogenase-like hydrolase NYR48_RS02775 PF00293 NUDIX domain NYR48_RS02790 PF08031 Berberine and berberine like NYR48_RS02790 PF01565 FAD binding domain NYR48_RS02800 PF04203 Sortase domain NYR48_RS02810 PF01545 Cation efflux family NYR48_RS02810 PF16916 Dimerisation domain of Zinc Transporter NYR48_RS02825 PF07883 Cupin domain NYR48_RS02830 PF12867 DinB superfamily NYR48_RS02835 PF00701 Dihydrodipicolinate synthetase family NYR48_RS02845 PF04055 Radical SAM superfamily NYR48_RS02865 PF13649 Methyltransferase domain NYR48_RS02870 PF08543 Phosphomethylpyrimidine kinase NYR48_RS02875 PF00293 NUDIX domain NYR48_RS02875 PF13344 Haloacid dehalogenase-like hydrolase NYR48_RS02885 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS02885 PF00107 Zinc-binding dehydrogenase NYR48_RS02890 PF13411 MerR HTH family regulatory protein NYR48_RS02900 PF00155 Aminotransferase class I and II NYR48_RS02900 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS02920 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS02920 PF00072 Response regulator receiver domain NYR48_RS02925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS02925 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS02935 PF07690 Major Facilitator Superfamily NYR48_RS02940 PF16859 Tetracyclin repressor-like, C-terminal domain NYR48_RS02940 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS02945 PF00892 EamA-like transporter family NYR48_RS02950 PF00155 Aminotransferase class I and II NYR48_RS02950 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS02955 PF07875 Coat F domain NYR48_RS02965 PF13823 Alcohol dehydrogenase GroES-associated NYR48_RS02965 PF00107 Zinc-binding dehydrogenase NYR48_RS02965 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS02970 PF07875 Coat F domain NYR48_RS02980 PF07690 Major Facilitator Superfamily NYR48_RS02990 PF12464 Maltose acetyltransferase NYR48_RS02990 PF14602 Hexapeptide repeat of succinyl-transferase NYR48_RS02995 PF07730 Histidine kinase NYR48_RS02995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS03000 PF00072 Response regulator receiver domain NYR48_RS03000 PF00196 Bacterial regulatory proteins, luxR family NYR48_RS03005 PF03176 MMPL family NYR48_RS03010 PF07722 Peptidase C26 NYR48_RS03015 PF00005 ABC transporter NYR48_RS03015 PF12848 ABC transporter NYR48_RS03020 PF13302 Acetyltransferase (GNAT) domain NYR48_RS03025 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR48_RS03025 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NYR48_RS03030 PF00465 Iron-containing alcohol dehydrogenase NYR48_RS03035 PF07690 Major Facilitator Superfamily NYR48_RS03040 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS03040 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS03050 PF01925 Sulfite exporter TauE/SafE NYR48_RS03055 PF00583 Acetyltransferase (GNAT) family NYR48_RS03065 PF00293 NUDIX domain NYR48_RS03070 PF08241 Methyltransferase domain NYR48_RS03075 PF00180 Isocitrate/isopropylmalate dehydrogenase NYR48_RS03080 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS03080 PF07729 FCD domain NYR48_RS03085 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase NYR48_RS03100 PF00144 Beta-lactamase NYR48_RS03100 PF11954 Domain of unknown function (DUF3471) NYR48_RS03110 PF07563 Protein of unknown function (DUF1541) NYR48_RS03115 PF07690 Major Facilitator Superfamily NYR48_RS03120 PF07702 UTRA domain NYR48_RS03120 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS03125 PF07729 FCD domain NYR48_RS03125 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS03130 PF07690 Major Facilitator Superfamily NYR48_RS03135 PF00893 Small Multidrug Resistance protein NYR48_RS03140 PF00893 Small Multidrug Resistance protein NYR48_RS03145 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS03145 PF17934 Tetracyclin repressor-like, C-terminal domain NYR48_RS03150 PF13520 Amino acid permease NYR48_RS03160 PF08327 Activator of Hsp90 ATPase homolog 1-like protein NYR48_RS03165 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS03165 PF00107 Zinc-binding dehydrogenase NYR48_RS03170 PF00083 Sugar (and other) transporter NYR48_RS03210 PF02769 AIR synthase related protein, C-terminal domain NYR48_RS03210 PF00586 AIR synthase related protein, N-terminal domain NYR48_RS03215 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NYR48_RS03220 PF00814 Glycoprotease family NYR48_RS03225 PF00583 Acetyltransferase (GNAT) family NYR48_RS03230 PF00814 Glycoprotease family NYR48_RS03235 PF00005 ABC transporter NYR48_RS03235 PF16326 ABC transporter C-terminal domain NYR48_RS03235 PF12848 ABC transporter NYR48_RS03240 PF01967 MoaC family NYR48_RS03245 PF02629 CoA binding domain NYR48_RS03245 PF06971 Putative DNA-binding protein N-terminus NYR48_RS03250 PF02416 mttA/Hcf106 family NYR48_RS03255 PF00902 Sec-independent protein translocase protein (TatC) NYR48_RS03260 PF14146 Domain of unknown function (DUF4305) NYR48_RS03265 PF02517 CPBP intramembrane metalloprotease NYR48_RS03270 PF00166 Chaperonin 10 Kd subunit NYR48_RS03275 PF00118 TCP-1/cpn60 chaperonin family NYR48_RS03285 PF13176 Tetratricopeptide repeat NYR48_RS03285 PF00931 NB-ARC domain NYR48_RS03290 PF00107 Zinc-binding dehydrogenase NYR48_RS03290 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS03300 PF00294 pfkB family carbohydrate kinase NYR48_RS03305 PF14154 Domain of unknown function (DUF4306) NYR48_RS03310 PF04012 PspA/IM30 family NYR48_RS03315 PF08271 TFIIB zinc-binding NYR48_RS03320 PF04536 TPM domain NYR48_RS03325 PF13421 SPFH domain-Band 7 family NYR48_RS03330 PF01757 Acyltransferase family NYR48_RS03340 PF13739 Deacetylase PdaC NYR48_RS03340 PF11738 Protein of unknown function (DUF3298) NYR48_RS03345 PF04542 Sigma-70 region 2 NYR48_RS03345 PF08281 Sigma-70, region 4 NYR48_RS03350 PF00107 Zinc-binding dehydrogenase NYR48_RS03350 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS03355 PF03330 Lytic transglycolase NYR48_RS03360 PF07676 WD40-like Beta Propeller Repeat NYR48_RS03370 PF14169 Cold-inducible protein YdjO NYR48_RS03375 PF00394 Multicopper oxidase NYR48_RS03375 PF07731 Multicopper oxidase NYR48_RS03375 PF07732 Multicopper oxidase NYR48_RS03380 PF00324 Amino acid permease NYR48_RS03385 PF17863 AAA lid domain NYR48_RS03385 PF07726 ATPase family associated with various cellular activities (AAA) NYR48_RS03390 PF01882 Protein of unknown function DUF58 NYR48_RS03395 PF01841 Transglutaminase-like superfamily NYR48_RS03395 PF13559 Domain of unknown function (DUF4129) NYR48_RS03395 PF11992 Domain of unknown function (DUF3488) NYR48_RS03400 PF00117 Glutamine amidotransferase class-I NYR48_RS03400 PF02540 NAD synthase NYR48_RS03400 PF00958 GMP synthase C terminal domain NYR48_RS03405 PF04073 Aminoacyl-tRNA editing domain NYR48_RS03410 PF02311 AraC-like ligand binding domain NYR48_RS03410 PF12833 Helix-turn-helix domain NYR48_RS03415 PF08502 LeuA allosteric (dimerisation) domain NYR48_RS03415 PF00682 HMGL-like NYR48_RS03425 PF04542 Sigma-70 region 2 NYR48_RS03425 PF04545 Sigma-70, region 4 NYR48_RS03435 PF00860 Permease family NYR48_RS03445 PF13076 Fur-regulated basic protein A NYR48_RS03450 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR48_RS03455 PF14044 NETI protein NYR48_RS03460 PF00731 AIR carboxylase NYR48_RS03465 PF02222 ATP-grasp domain NYR48_RS03465 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NYR48_RS03470 PF10397 Adenylosuccinate lyase C-terminus NYR48_RS03470 PF00206 Lyase NYR48_RS03475 PF01259 SAICAR synthetase NYR48_RS03480 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase NYR48_RS03490 PF02769 AIR synthase related protein, C-terminal domain NYR48_RS03490 PF00586 AIR synthase related protein, N-terminal domain NYR48_RS03490 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NYR48_RS03495 PF00156 Phosphoribosyl transferase domain NYR48_RS03500 PF00586 AIR synthase related protein, N-terminal domain NYR48_RS03500 PF02769 AIR synthase related protein, C-terminal domain NYR48_RS03505 PF00551 Formyl transferase NYR48_RS03510 PF01808 AICARFT/IMPCHase bienzyme NYR48_RS03510 PF02142 MGS-like domain NYR48_RS03515 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NYR48_RS03515 PF02843 Phosphoribosylglycinamide synthetase, C domain NYR48_RS03515 PF02844 Phosphoribosylglycinamide synthetase, N domain NYR48_RS03520 PF11127 Protein of unknown function (DUF2892) NYR48_RS03525 PF13382 Adenine deaminase C-terminal domain NYR48_RS03525 PF01979 Amidohydrolase family NYR48_RS03530 PF17479 Protein of unknown function (DUF3048) C-terminal domain NYR48_RS03530 PF11258 Protein of unknown function (DUF3048) N-terminal domain NYR48_RS03535 PF01371 Trp repressor protein NYR48_RS03540 PF01645 Conserved region in glutamate synthase NYR48_RS03545 PF01884 PcrB family NYR48_RS03550 PF00580 UvrD/REP helicase N-terminal domain NYR48_RS03550 PF13361 UvrD-like helicase C-terminal domain NYR48_RS03555 PF00533 BRCA1 C Terminus (BRCT) domain NYR48_RS03555 PF01653 NAD-dependent DNA ligase adenylation domain NYR48_RS03555 PF03120 NAD-dependent DNA ligase OB-fold domain NYR48_RS03555 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NYR48_RS03555 PF12826 Helix-hairpin-helix motif NYR48_RS03560 PF07537 CamS sex pheromone cAM373 precursor NYR48_RS03565 PF01636 Phosphotransferase enzyme family NYR48_RS03570 PF02308 MgtC family NYR48_RS03575 PF00474 Sodium:solute symporter family NYR48_RS03580 PF02686 Glu-tRNAGln amidotransferase C subunit NYR48_RS03585 PF01425 Amidase NYR48_RS03590 PF02934 GatB/GatE catalytic domain NYR48_RS03590 PF02637 GatB domain NYR48_RS03595 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS03600 PF00873 AcrB/AcrD/AcrF family NYR48_RS03605 PF00781 Diacylglycerol kinase catalytic domain NYR48_RS03610 PF01938 TRAM domain NYR48_RS03610 PF05958 tRNA (Uracil-5-)-methyltransferase NYR48_RS03620 PF00005 ABC transporter NYR48_RS03635 PF04634 Protein of unknown function, DUF600 NYR48_RS03640 PF04634 Protein of unknown function, DUF600 NYR48_RS03645 PF04634 Protein of unknown function, DUF600 NYR48_RS03660 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH NYR48_RS03660 PF04740 LXG domain of WXG superfamily NYR48_RS03665 PF01709 Transcriptional regulator NYR48_RS03680 PF11007 Spore coat associated protein JA (CotJA) NYR48_RS03685 PF12652 CotJB protein NYR48_RS03690 PF05067 Manganese containing catalase NYR48_RS03695 PF00583 Acetyltransferase (GNAT) family NYR48_RS03705 PF04239 Protein of unknown function (DUF421) NYR48_RS03715 PF03992 Antibiotic biosynthesis monooxygenase NYR48_RS03720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR48_RS03725 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain NYR48_RS03725 PF01740 STAS domain NYR48_RS03730 PF10055 Uncharacterized small protein (DUF2292) NYR48_RS03735 PF01687 Riboflavin kinase NYR48_RS03740 PF01027 Inhibitor of apoptosis-promoting Bax1 NYR48_RS03745 PF01047 MarR family NYR48_RS03750 PF01494 FAD binding domain NYR48_RS03755 PF13037 Domain of unknown function (DUF3898) NYR48_RS03755 PF13039 Protein of unknown function (DUF3900) NYR48_RS03760 PF00067 Cytochrome P450 NYR48_RS03760 PF00175 Oxidoreductase NAD-binding domain NYR48_RS03760 PF00258 Flavodoxin NYR48_RS03760 PF00667 FAD binding domain NYR48_RS03775 PF00005 ABC transporter NYR48_RS03810 PF00881 Nitroreductase family NYR48_RS03820 PF13649 Methyltransferase domain NYR48_RS03825 PF00884 Sulfatase NYR48_RS03830 PF00483 Nucleotidyl transferase NYR48_RS03835 PF16363 GDP-mannose 4,6 dehydratase NYR48_RS03840 PF03407 Nucleotide-diphospho-sugar transferase NYR48_RS03845 PF00535 Glycosyl transferase family 2 NYR48_RS03850 PF03407 Nucleotide-diphospho-sugar transferase NYR48_RS03855 PF07690 Major Facilitator Superfamily NYR48_RS03860 PF13520 Amino acid permease NYR48_RS03865 PF00171 Aldehyde dehydrogenase family NYR48_RS03870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NYR48_RS03880 PF13181 Tetratricopeptide repeat NYR48_RS03880 PF00535 Glycosyl transferase family 2 NYR48_RS03885 PF00005 ABC transporter NYR48_RS03885 PF16326 ABC transporter C-terminal domain NYR48_RS03885 PF12848 ABC transporter NYR48_RS03890 PF13411 MerR HTH family regulatory protein NYR48_RS03895 PF07690 Major Facilitator Superfamily NYR48_RS03900 PF00005 ABC transporter NYR48_RS03900 PF12848 ABC transporter NYR48_RS03905 PF00270 DEAD/DEAH box helicase NYR48_RS03905 PF00271 Helicase conserved C-terminal domain NYR48_RS03910 PF00583 Acetyltransferase (GNAT) family NYR48_RS03915 PF00107 Zinc-binding dehydrogenase NYR48_RS03915 PF16884 N-terminal domain of oxidoreductase NYR48_RS03920 PF11486 Protein of unknown function (DUF3212) NYR48_RS03925 PF11181 Heat induced stress protein YflT NYR48_RS03930 PF00544 Pectate lyase NYR48_RS03935 PF00939 Sodium:sulfate symporter transmembrane region NYR48_RS03970 PF06580 Histidine kinase NYR48_RS03970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS03980 PF04397 LytTr DNA-binding domain NYR48_RS03980 PF00072 Response regulator receiver domain NYR48_RS03990 PF04203 Sortase domain NYR48_RS03995 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NYR48_RS03995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS04000 PF00072 Response regulator receiver domain NYR48_RS04000 PF08279 HTH domain NYR48_RS04000 PF12431 Transcriptional regulator NYR48_RS04005 PF03401 Tripartite tricarboxylate transporter family receptor NYR48_RS04010 PF03600 Citrate transporter NYR48_RS04015 PF00753 Metallo-beta-lactamase superfamily NYR48_RS04020 PF02898 Nitric oxide synthase, oxygenase domain NYR48_RS04025 PF00708 Acylphosphatase NYR48_RS04030 PF03475 3-alpha domain NYR48_RS04030 PF03473 MOSC domain NYR48_RS04035 PF11121 Protein of unknown function (DUF2639) NYR48_RS04045 PF11588 Protein of unknown function (DUF3243) NYR48_RS04050 PF00557 Metallopeptidase family M24 NYR48_RS04055 PF00367 phosphotransferase system, EIIB NYR48_RS04055 PF02378 Phosphotransferase system, EIIC NYR48_RS04060 PF10787 Uncharacterised protein from bacillus cereus group NYR48_RS04065 PF00884 Sulfatase NYR48_RS04070 PF09350 Domain of unknown function (DUF1992) NYR48_RS04075 PF00011 Hsp20/alpha crystallin family NYR48_RS04080 PF10676 Spore germination protein gerPA/gerPF NYR48_RS04085 PF10676 Spore germination protein gerPA/gerPF NYR48_RS04090 PF02378 Phosphotransferase system, EIIC NYR48_RS04090 PF00367 phosphotransferase system, EIIB NYR48_RS04095 PF16657 Maltogenic Amylase, C-terminal domain NYR48_RS04095 PF00128 Alpha amylase, catalytic domain NYR48_RS04100 PF07702 UTRA domain NYR48_RS04100 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS04105 PF00881 Nitroreductase family NYR48_RS04120 PF00149 Calcineurin-like phosphoesterase NYR48_RS04120 PF02872 5'-nucleotidase, C-terminal domain NYR48_RS04125 PF01965 DJ-1/PfpI family NYR48_RS04130 PF00356 Bacterial regulatory proteins, lacI family NYR48_RS04135 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NYR48_RS04135 PF08501 Shikimate dehydrogenase substrate binding domain NYR48_RS04140 PF01487 Type I 3-dehydroquinase NYR48_RS04145 PF07690 Major Facilitator Superfamily NYR48_RS04150 PF06569 Protein of unknown function (DUF1128) NYR48_RS04155 PF01451 Low molecular weight phosphotyrosine protein phosphatase NYR48_RS04165 PF03631 Virulence factor BrkB NYR48_RS04170 PF07690 Major Facilitator Superfamily NYR48_RS04175 PF01699 Sodium/calcium exchanger protein NYR48_RS04180 PF14167 YfkD-like protein NYR48_RS04185 PF00924 Mechanosensitive ion channel NYR48_RS04190 PF08756 YfkB-like domain NYR48_RS04190 PF04055 Radical SAM superfamily NYR48_RS04200 PF01522 Polysaccharide deacetylase NYR48_RS04205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NYR48_RS04205 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NYR48_RS04215 PF01544 CorA-like Mg2+ transporter protein NYR48_RS04220 PF00730 HhH-GPD superfamily base excision DNA repair protein NYR48_RS04225 PF01938 TRAM domain NYR48_RS04225 PF05958 tRNA (Uracil-5-)-methyltransferase NYR48_RS04230 PF14118 YfzA-like protein NYR48_RS04235 PF01207 Dihydrouridine synthase (Dus) NYR48_RS04245 PF00676 Dehydrogenase E1 component NYR48_RS04250 PF02780 Transketolase, C-terminal domain NYR48_RS04250 PF02779 Transketolase, pyrimidine binding domain NYR48_RS04255 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NYR48_RS04255 PF00364 Biotin-requiring enzyme NYR48_RS04255 PF02817 e3 binding domain NYR48_RS04260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NYR48_RS04260 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS04265 PF02954 Bacterial regulatory protein, Fis family NYR48_RS04265 PF00158 Sigma-54 interaction domain NYR48_RS04265 PF01590 GAF domain NYR48_RS04270 PF08141 Small acid-soluble spore protein H family NYR48_RS04275 PF02056 Family 4 glycosyl hydrolase NYR48_RS04275 PF11975 Family 4 glycosyl hydrolase C-terminal domain NYR48_RS04280 PF01418 Helix-turn-helix domain, rpiR family NYR48_RS04280 PF01380 SIS domain NYR48_RS04285 PF00367 phosphotransferase system, EIIB NYR48_RS04285 PF02378 Phosphotransferase system, EIIC NYR48_RS04290 PF12708 Pectate lyase superfamily protein NYR48_RS04290 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain NYR48_RS04295 PF00664 ABC transporter transmembrane region NYR48_RS04295 PF00005 ABC transporter NYR48_RS04300 PF00664 ABC transporter transmembrane region NYR48_RS04300 PF00005 ABC transporter NYR48_RS04305 PF07681 DoxX NYR48_RS04310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR48_RS04315 PF01040 UbiA prenyltransferase family NYR48_RS04320 PF10400 Virulence activator alpha C-term NYR48_RS04320 PF03551 Transcriptional regulator PadR-like family NYR48_RS04325 PF02525 Flavodoxin-like fold NYR48_RS04330 PF01757 Acyltransferase family NYR48_RS04335 PF00391 PEP-utilising enzyme, mobile domain NYR48_RS04335 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NYR48_RS04340 PF01337 Barstar (barnase inhibitor) NYR48_RS04345 PF12867 DinB superfamily NYR48_RS04350 PF07690 Major Facilitator Superfamily NYR48_RS04355 PF01047 MarR family NYR48_RS04360 PF03706 Lysylphosphatidylglycerol synthase TM region NYR48_RS04360 PF09924 Uncharacterised conserved protein (DUF2156) NYR48_RS04365 PF02567 Phenazine biosynthesis-like protein NYR48_RS04370 PF00881 Nitroreductase family NYR48_RS04375 PF14151 YfhD-like protein NYR48_RS04380 PF14152 YfhE-like protein NYR48_RS04385 PF08338 Domain of unknown function (DUF1731) NYR48_RS04385 PF01370 NAD dependent epimerase/dehydratase family NYR48_RS04390 PF02631 RecX family NYR48_RS04395 PF08838 Protein of unknown function (DUF1811) NYR48_RS04400 PF07690 Major Facilitator Superfamily NYR48_RS04405 PF10794 Protein of unknown function (DUF2606) NYR48_RS04410 PF00089 Trypsin NYR48_RS04415 PF08176 Small acid-soluble spore protein K family NYR48_RS04420 PF14043 WVELL protein NYR48_RS04425 PF08239 Bacterial SH3 domain NYR48_RS04430 PF13630 SdpI/YhfL protein family NYR48_RS04435 PF00561 alpha/beta hydrolase fold NYR48_RS04440 PF00535 Glycosyl transferase family 2 NYR48_RS04445 PF09586 Bacterial membrane protein YfhO NYR48_RS04450 PF04307 LexA-binding, inner membrane-associated putative hydrolase NYR48_RS04455 PF00730 HhH-GPD superfamily base excision DNA repair protein NYR48_RS04455 PF14815 NUDIX domain NYR48_RS04470 PF04259 Small, acid-soluble spore protein, gamma-type NYR48_RS04475 PF14182 YgaB-like protein NYR48_RS04480 PF04167 Protein of unknown function (DUF402) NYR48_RS04485 PF00664 ABC transporter transmembrane region NYR48_RS04485 PF00005 ABC transporter NYR48_RS04490 PF06081 Aromatic acid exporter family member 1 NYR48_RS04495 PF00202 Aminotransferase class-III NYR48_RS04500 PF00578 AhpC/TSA family NYR48_RS04505 PF01475 Ferric uptake regulator family NYR48_RS04510 PF11023 Zinc-ribbon containing domain NYR48_RS04515 PF18576 Helix-turn-helix domain NYR48_RS04515 PF14540 Nucleotidyltransferase-like NYR48_RS04615 PF03553 Na+/H+ antiporter family NYR48_RS04625 PF01964 Radical SAM ThiC family NYR48_RS04625 PF13667 ThiC-associated domain NYR48_RS04630 PF08031 Berberine and berberine like NYR48_RS04630 PF01565 FAD binding domain NYR48_RS04635 PF13040 Fur-regulated basic protein B NYR48_RS04640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NYR48_RS04645 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS04650 PF12911 N-terminal TM domain of oligopeptide transport permease C NYR48_RS04650 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS04655 PF00005 ABC transporter NYR48_RS04655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NYR48_RS04660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NYR48_RS04660 PF00005 ABC transporter NYR48_RS04665 PF06628 Catalase-related immune-responsive NYR48_RS04665 PF00199 Catalase NYR48_RS04675 PF00005 ABC transporter NYR48_RS04680 PF09084 NMT1/THI5 like NYR48_RS04685 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS04690 PF00296 Luciferase-like monooxygenase NYR48_RS04695 PF00253 Ribosomal protein S14p/S29e NYR48_RS04705 PF01381 Helix-turn-helix NYR48_RS04720 PF08331 Domain of unknown function (DUF1730) NYR48_RS04725 PF12671 Putative amidase domain NYR48_RS04730 PF00588 SpoU rRNA Methylase family NYR48_RS04735 PF13171 Protein of unknown function (DUF4004) NYR48_RS04740 PF04519 Polymer-forming cytoskeletal NYR48_RS04750 PF08298 PrkA AAA domain NYR48_RS04750 PF06798 PrkA serine protein kinase C-terminal domain NYR48_RS04755 PF04285 Protein of unknown function (DUF444) NYR48_RS04760 PF01047 MarR family NYR48_RS04770 PF07690 Major Facilitator Superfamily NYR48_RS04775 PF03358 NADPH-dependent FMN reductase NYR48_RS04790 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS04795 PF00005 ABC transporter NYR48_RS04800 PF00005 ABC transporter NYR48_RS04805 PF12679 ABC-2 family transporter protein NYR48_RS04810 PF00313 'Cold-shock' DNA-binding domain NYR48_RS04815 PF03180 NLPA lipoprotein NYR48_RS04820 PF00990 Diguanylate cyclase, GGDEF domain NYR48_RS04820 PF07694 5TMR of 5TMR-LYT NYR48_RS04825 PF00375 Sodium:dicarboxylate symporter family NYR48_RS04835 PF00892 EamA-like transporter family NYR48_RS04850 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NYR48_RS04860 PF07875 Coat F domain NYR48_RS04865 PF02872 5'-nucleotidase, C-terminal domain NYR48_RS04865 PF00746 LPXTG cell wall anchor motif NYR48_RS04865 PF00149 Calcineurin-like phosphoesterase NYR48_RS04865 PF00565 Staphylococcal nuclease homologue NYR48_RS04870 PF04203 Sortase domain NYR48_RS04875 PF00849 RNA pseudouridylate synthase NYR48_RS04875 PF01479 S4 domain NYR48_RS04880 PF17326 Family of unknown function (DUF5365) NYR48_RS04885 PF00571 CBS domain NYR48_RS04890 PF13419 Haloacid dehalogenase-like hydrolase NYR48_RS04895 PF00583 Acetyltransferase (GNAT) family NYR48_RS04895 PF00795 Carbon-nitrogen hydrolase NYR48_RS04905 PF00202 Aminotransferase class-III NYR48_RS04910 PF04309 Glycerol-3-phosphate responsive antiterminator NYR48_RS04915 PF00230 Major intrinsic protein NYR48_RS04920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NYR48_RS04920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NYR48_RS04925 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NYR48_RS04925 PF01266 FAD dependent oxidoreductase NYR48_RS04930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NYR48_RS04930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NYR48_RS04930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NYR48_RS04930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NYR48_RS04935 PF13185 GAF domain NYR48_RS04935 PF07730 Histidine kinase NYR48_RS04940 PF00196 Bacterial regulatory proteins, luxR family NYR48_RS04940 PF00072 Response regulator receiver domain NYR48_RS04945 PF03358 NADPH-dependent FMN reductase NYR48_RS04950 PF14148 YhdB-like protein NYR48_RS04955 PF13028 Protein of unknown function (DUF3889) NYR48_RS04960 PF00877 NlpC/P60 family NYR48_RS04960 PF01476 LysM domain NYR48_RS04965 PF02082 Transcriptional regulator NYR48_RS04975 PF04293 SpoVR like protein NYR48_RS04980 PF00245 Alkaline phosphatase NYR48_RS04985 PF01476 LysM domain NYR48_RS04985 PF00877 NlpC/P60 family NYR48_RS04990 PF03466 LysR substrate binding domain NYR48_RS04990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS04995 PF00285 Citrate synthase, C-terminal domain NYR48_RS05005 PF13520 Amino acid permease NYR48_RS05010 PF00209 Sodium:neurotransmitter symporter family NYR48_RS05015 PF17453 Sigma-M inhibitor NYR48_RS05020 PF13791 Sigma factor regulator C-terminal NYR48_RS05020 PF13800 Sigma factor regulator N-terminal NYR48_RS05025 PF04542 Sigma-70 region 2 NYR48_RS05025 PF08281 Sigma-70, region 4 NYR48_RS05030 PF01553 Acyltransferase NYR48_RS05035 PF00571 CBS domain NYR48_RS05035 PF03471 Transporter associated domain NYR48_RS05035 PF01595 Cyclin M transmembrane N-terminal domain NYR48_RS05040 PF13411 MerR HTH family regulatory protein NYR48_RS05045 PF00155 Aminotransferase class I and II NYR48_RS05050 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS05050 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS05055 PF00571 CBS domain NYR48_RS05055 PF01595 Cyclin M transmembrane N-terminal domain NYR48_RS05055 PF03471 Transporter associated domain NYR48_RS05060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NYR48_RS05065 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NYR48_RS05070 PF03009 Glycerophosphoryl diester phosphodiesterase family NYR48_RS05075 PF17444 Uncharacterized YhdX-like NYR48_RS05080 PF00924 Mechanosensitive ion channel NYR48_RS05085 PF02146 Sir2 family NYR48_RS05090 PF01522 Polysaccharide deacetylase NYR48_RS05095 PF01063 Amino-transferase class IV NYR48_RS05100 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS05100 PF13977 BetI-type transcriptional repressor, C-terminal NYR48_RS05110 PF00582 Universal stress protein family NYR48_RS05115 PF00664 ABC transporter transmembrane region NYR48_RS05115 PF00005 ABC transporter NYR48_RS05120 PF00005 ABC transporter NYR48_RS05120 PF00664 ABC transporter transmembrane region NYR48_RS05125 PF13460 NAD(P)H-binding NYR48_RS05135 PF00269 Small, acid-soluble spore proteins, alpha/beta type NYR48_RS05140 PF17277 Family of unknown function (DUF5342) NYR48_RS05145 PF14398 YheC/D like ATP-grasp NYR48_RS05150 PF14398 YheC/D like ATP-grasp NYR48_RS05155 PF04286 Protein of unknown function (DUF445) NYR48_RS05160 PF06133 Control of competence regulator ComK, YlbF/YmcA NYR48_RS05165 PF08713 DNA alkylation repair enzyme NYR48_RS05175 PF04055 Radical SAM superfamily NYR48_RS05180 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NYR48_RS05185 PF00999 Sodium/hydrogen exchanger family NYR48_RS05190 PF02080 TrkA-C domain NYR48_RS05200 PF00378 Enoyl-CoA hydratase/isomerase NYR48_RS05205 PF14120 YhzD-like protein NYR48_RS05210 PF00005 ABC transporter NYR48_RS05210 PF13732 Domain of unknown function (DUF4162) NYR48_RS05220 PF00149 Calcineurin-like phosphoesterase NYR48_RS05225 PF13514 AAA domain NYR48_RS05230 PF01966 HD domain NYR48_RS05235 PF14147 Sporulation protein YhaL NYR48_RS05245 PF09680 Family of unknown function NYR48_RS05250 PF09680 Family of unknown function NYR48_RS05260 PF11667 Putative zincin peptidase NYR48_RS05265 PF08963 Protein of unknown function (DUF1878) NYR48_RS05270 PF01047 MarR family NYR48_RS05275 PF12732 YtxH-like protein NYR48_RS05285 PF17099 Tryptophan transporter TrpP NYR48_RS05290 PF00266 Aminotransferase class-V NYR48_RS05295 PF01230 HIT domain NYR48_RS05300 PF00005 ABC transporter NYR48_RS05305 PF05975 Bacterial ABC transporter protein EcsB NYR48_RS05310 PF12787 EcsC protein family NYR48_RS05315 PF01546 Peptidase family M20/M25/M40 NYR48_RS05315 PF07687 Peptidase dimerisation domain NYR48_RS05325 PF03992 Antibiotic biosynthesis monooxygenase NYR48_RS05330 PF00912 Transglycosylase NYR48_RS05330 PF00905 Penicillin binding protein transpeptidase domain NYR48_RS05335 PF01208 Uroporphyrinogen decarboxylase (URO-D) NYR48_RS05340 PF00762 Ferrochelatase NYR48_RS05345 PF01593 Flavin containing amine oxidoreductase NYR48_RS05350 PF17932 Tetracyclin repressor-like, C-terminal domain NYR48_RS05350 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS05360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NYR48_RS05360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NYR48_RS05370 PF05343 M42 glutamyl aminopeptidase NYR48_RS05375 PF00375 Sodium:dicarboxylate symporter family NYR48_RS05380 PF14149 YhfH-like protein NYR48_RS05385 PF12706 Beta-lactamase superfamily domain NYR48_RS05390 PF03099 Biotin/lipoate A/B protein ligase family NYR48_RS05390 PF10437 Bacterial lipoate protein ligase C-terminus NYR48_RS05395 PF13460 NAD(P)H-binding NYR48_RS05400 PF00501 AMP-binding enzyme NYR48_RS05400 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS05410 PF01435 Peptidase family M48 NYR48_RS05410 PF16491 CAAX prenyl protease N-terminal, five membrane helices NYR48_RS05415 PF05922 Peptidase inhibitor I9 NYR48_RS05415 PF00082 Subtilase family NYR48_RS05420 PF01497 Periplasmic binding protein NYR48_RS05425 PF00300 Histidine phosphatase superfamily (branch 1) NYR48_RS05430 PF02803 Thiolase, C-terminal domain NYR48_RS05430 PF00108 Thiolase, N-terminal domain NYR48_RS05435 PF00501 AMP-binding enzyme NYR48_RS05435 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS05440 PF02632 BioY family NYR48_RS05445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NYR48_RS05450 PF01266 FAD dependent oxidoreductase NYR48_RS05450 PF00355 Rieske [2Fe-2S] domain NYR48_RS05460 PF08858 IDEAL domain NYR48_RS05465 PF06338 ComK protein NYR48_RS05475 PF08818 Domain of unknown function (DU1801) NYR48_RS05485 PF15493 Domain of unknown function, YrpD NYR48_RS05490 PF05901 Excalibur calcium-binding domain NYR48_RS05495 PF01906 Putative heavy-metal-binding NYR48_RS05500 PF00474 Sodium:solute symporter family NYR48_RS05505 PF11755 Protein of unknown function (DUF3311) NYR48_RS05515 PF09335 SNARE associated Golgi protein NYR48_RS05520 PF10502 Signal peptidase, peptidase S26 NYR48_RS05525 PF01494 FAD binding domain NYR48_RS05530 PF01047 MarR family NYR48_RS05535 PF05145 Transition state regulatory protein AbrB NYR48_RS05540 PF07690 Major Facilitator Superfamily NYR48_RS05545 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS05545 PF08361 MAATS-type transcriptional repressor, C-terminal region NYR48_RS05550 PF02915 Rubrerythrin NYR48_RS05555 PF04239 Protein of unknown function (DUF421) NYR48_RS05560 PF12705 PD-(D/E)XK nuclease superfamily NYR48_RS05560 PF13361 UvrD-like helicase C-terminal domain NYR48_RS05565 PF12705 PD-(D/E)XK nuclease superfamily NYR48_RS05565 PF00580 UvrD/REP helicase N-terminal domain NYR48_RS05565 PF13361 UvrD-like helicase C-terminal domain NYR48_RS05570 PF00149 Calcineurin-like phosphoesterase NYR48_RS05570 PF12320 Type 5 capsule protein repressor C-terminal domain NYR48_RS05575 PF13476 AAA domain NYR48_RS05585 PF10676 Spore germination protein gerPA/gerPF NYR48_RS05590 PF10970 Spore germination protein GerPE NYR48_RS05600 PF10737 Spore germination protein GerPC NYR48_RS05605 PF10803 Spore germination GerPB NYR48_RS05610 PF10676 Spore germination protein gerPA/gerPF NYR48_RS05615 PF09388 Spo0E like sporulation regulatory protein NYR48_RS05620 PF01557 Fumarylacetoacetate (FAA) hydrolase family NYR48_RS05625 PF07457 Protein of unknown function (DUF1516) NYR48_RS05630 PF10949 Protein of unknown function (DUF2777) NYR48_RS05635 PF00733 Asparagine synthase NYR48_RS05635 PF13537 Glutamine amidotransferase domain NYR48_RS05645 PF01554 MatE NYR48_RS05650 PF02311 AraC-like ligand binding domain NYR48_RS05650 PF12833 Helix-turn-helix domain NYR48_RS05655 PF05163 DinB family NYR48_RS05660 PF01810 LysE type translocator NYR48_RS05670 PF13599 Pentapeptide repeats (9 copies) NYR48_RS05675 PF13673 Acetyltransferase (GNAT) domain NYR48_RS05680 PF02219 Methylenetetrahydrofolate reductase NYR48_RS05680 PF02574 Homocysteine S-methyltransferase NYR48_RS05685 PF04461 Protein of unknown function (DUF520) NYR48_RS05690 PF13509 S1 domain NYR48_RS05690 PF17783 CvfB-like winged helix domain NYR48_RS05695 PF02608 ABC transporter substrate-binding protein PnrA-like NYR48_RS05700 PF12729 Four helix bundle sensory module for signal transduction NYR48_RS05700 PF00672 HAMP domain NYR48_RS05700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NYR48_RS05705 PF00067 Cytochrome P450 NYR48_RS05715 PF02645 Uncharacterised protein, DegV family COG1307 NYR48_RS05720 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR48_RS05720 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NYR48_RS05725 PF12690 Intracellular proteinase inhibitor NYR48_RS05730 PF12758 Protein of unknown function (DUF3813) NYR48_RS05745 PF00326 Prolyl oligopeptidase family NYR48_RS05750 PF01883 Iron-sulfur cluster assembly protein NYR48_RS05755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR48_RS05760 PF01565 FAD binding domain NYR48_RS05765 PF07690 Major Facilitator Superfamily NYR48_RS05770 PF01118 Semialdehyde dehydrogenase, NAD binding domain NYR48_RS05770 PF02774 Semialdehyde dehydrogenase, dimerisation domain NYR48_RS05775 PF01960 ArgJ family NYR48_RS05780 PF00696 Amino acid kinase family NYR48_RS05785 PF00202 Aminotransferase class-III NYR48_RS05790 PF00117 Glutamine amidotransferase class-I NYR48_RS05790 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NYR48_RS05795 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NYR48_RS05795 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NYR48_RS05800 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NYR48_RS05800 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NYR48_RS05805 PF14168 YjzC-like protein NYR48_RS05810 PF11151 Protein of unknown function (DUF2929) NYR48_RS05825 PF02608 ABC transporter substrate-binding protein PnrA-like NYR48_RS05830 PF10815 ComZ NYR48_RS05840 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NYR48_RS05840 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NYR48_RS05845 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS05845 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS05850 PF10026 Predicted Zn-dependent protease (DUF2268) NYR48_RS05855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NYR48_RS05855 PF00005 ABC transporter NYR48_RS05860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NYR48_RS05860 PF00005 ABC transporter NYR48_RS05865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NYR48_RS05870 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS05875 PF12911 N-terminal TM domain of oligopeptide transport permease C NYR48_RS05875 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS05880 PF12227 Protein of unknown function (DUF3603) NYR48_RS05885 PF00579 tRNA synthetases class I (W and Y) NYR48_RS05890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NYR48_RS05895 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS05900 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS05900 PF12911 N-terminal TM domain of oligopeptide transport permease C NYR48_RS05905 PF00005 ABC transporter NYR48_RS05905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NYR48_RS05910 PF00005 ABC transporter NYR48_RS05910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NYR48_RS05920 PF13508 Acetyltransferase (GNAT) domain NYR48_RS05925 PF03960 ArsC family NYR48_RS05930 PF03741 Integral membrane protein TerC family NYR48_RS05935 PF05389 Negative regulator of genetic competence (MecA) NYR48_RS05940 PF06054 Competence protein CoiA-like family NYR48_RS05945 PF08439 Oligopeptidase F NYR48_RS05945 PF01432 Peptidase family M3 NYR48_RS05960 PF01152 Bacterial-like globin NYR48_RS05965 PF01464 Transglycosylase SLT domain NYR48_RS05970 PF01928 CYTH domain NYR48_RS05980 PF04607 Region found in RelA / SpoT proteins NYR48_RS05985 PF01513 ATP-NAD kinase NYR48_RS05990 PF00849 RNA pseudouridylate synthase NYR48_RS05995 PF00149 Calcineurin-like phosphoesterase NYR48_RS06000 PF02254 TrkA-N domain NYR48_RS06000 PF00999 Sodium/hydrogen exchanger family NYR48_RS06000 PF02080 TrkA-C domain NYR48_RS06005 PF03070 TENA/THI-4/PQQC family NYR48_RS06010 PF02581 Thiamine monophosphate synthase NYR48_RS06015 PF01266 FAD dependent oxidoreductase NYR48_RS06020 PF02597 ThiS family NYR48_RS06025 PF05690 Thiazole biosynthesis protein ThiG NYR48_RS06030 PF00899 ThiF family NYR48_RS06035 PF08543 Phosphomethylpyrimidine kinase NYR48_RS06045 PF14153 Spore coat protein CotO NYR48_RS06050 PF10612 Spore coat protein Z NYR48_RS06055 PF10612 Spore coat protein Z NYR48_RS06060 PF07552 Spore Coat Protein X and V domain NYR48_RS06070 PF07552 Spore Coat Protein X and V domain NYR48_RS06075 PF07098 Protein of unknown function (DUF1360) NYR48_RS06090 PF14069 Stage VI sporulation protein F NYR48_RS06095 PF00580 UvrD/REP helicase N-terminal domain NYR48_RS06095 PF13361 UvrD-like helicase C-terminal domain NYR48_RS06105 PF00753 Metallo-beta-lactamase superfamily NYR48_RS06115 PF00005 ABC transporter NYR48_RS06125 PF13673 Acetyltransferase (GNAT) domain NYR48_RS06135 PF00756 Putative esterase NYR48_RS06140 PF01053 Cys/Met metabolism PLP-dependent enzyme NYR48_RS06145 PF01053 Cys/Met metabolism PLP-dependent enzyme NYR48_RS06155 PF14659 Phage integrase, N-terminal SAM-like domain NYR48_RS06155 PF00589 Phage integrase family NYR48_RS06160 PF06114 IrrE N-terminal-like domain NYR48_RS06170 PF01381 Helix-turn-helix NYR48_RS06185 PF01381 Helix-turn-helix NYR48_RS06190 PF17448 Uncharacterized YqaH-like NYR48_RS06195 PF09466 Hypothetical protein Yqai NYR48_RS06215 PF07261 Replication initiation and membrane attachment NYR48_RS06220 PF01695 IstB-like ATP binding protein NYR48_RS06240 PF17356 Phage-like element PBSX protein XtrA NYR48_RS06255 PF02368 Bacterial Ig-like domain (group 2) NYR48_RS06280 PF08281 Sigma-70, region 4 NYR48_RS06300 PF10668 Phage terminase small subunit NYR48_RS06365 PF00704 Glycosyl hydrolases family 18 NYR48_RS06365 PF00041 Fibronectin type III domain NYR48_RS06415 PF05105 Bacteriophage holin family NYR48_RS06420 PF01510 N-acetylmuramoyl-L-alanine amidase NYR48_RS06420 PF01471 Putative peptidoglycan binding domain NYR48_RS06455 PF18593 CdiI immunity protein NYR48_RS06460 PF04740 LXG domain of WXG superfamily NYR48_RS06460 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH NYR48_RS06485 PF08281 Sigma-70, region 4 NYR48_RS06500 PF02810 SEC-C motif NYR48_RS06500 PF07517 SecA DEAD-like domain NYR48_RS06500 PF07516 SecA Wing and Scaffold domain NYR48_RS06500 PF01043 SecA preprotein cross-linking domain NYR48_RS06515 PF03992 Antibiotic biosynthesis monooxygenase NYR48_RS06520 PF07690 Major Facilitator Superfamily NYR48_RS06525 PF01047 MarR family NYR48_RS06530 PF07745 Glycosyl hydrolase family 53 NYR48_RS06535 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NYR48_RS06535 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NYR48_RS06540 PF16363 GDP-mannose 4,6 dehydratase NYR48_RS06545 PF10509 Galactokinase galactose-binding signature NYR48_RS06545 PF08544 GHMP kinases C terminal NYR48_RS06545 PF00288 GHMP kinases N terminal domain NYR48_RS06550 PF02378 Phosphotransferase system, EIIC NYR48_RS06550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NYR48_RS06555 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NYR48_RS06560 PF00232 Glycosyl hydrolase family 1 NYR48_RS06565 PF08220 DeoR-like helix-turn-helix domain NYR48_RS06565 PF00455 DeoR C terminal sensor domain NYR48_RS06585 PF02308 MgtC family NYR48_RS06590 PF14070 Putative motility protein NYR48_RS06595 PF10990 Protein of unknown function (DUF2809) NYR48_RS06600 PF14172 Domain of unknown function (DUF4309) NYR48_RS06605 PF00384 Molybdopterin oxidoreductase NYR48_RS06605 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NYR48_RS06605 PF01568 Molydopterin dinucleotide binding domain NYR48_RS06605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NYR48_RS06605 PF12838 4Fe-4S dicluster domain NYR48_RS06610 PF07849 Protein of unknown function (DUF1641) NYR48_RS06615 PF00067 Cytochrome P450 NYR48_RS06620 PF04101 Glycosyltransferase family 28 C-terminal domain NYR48_RS06630 PF02602 Uroporphyrinogen-III synthase HemD NYR48_RS06635 PF03649 Uncharacterised protein family (UPF0014) NYR48_RS06640 PF00005 ABC transporter NYR48_RS06645 PF13536 Putative multidrug resistance efflux transporter NYR48_RS06655 PF07849 Protein of unknown function (DUF1641) NYR48_RS06660 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS06665 PF02614 Glucuronate isomerase NYR48_RS06675 PF00356 Bacterial regulatory proteins, lacI family NYR48_RS06680 PF01232 Mannitol dehydrogenase Rossmann domain NYR48_RS06680 PF08125 Mannitol dehydrogenase C-terminal domain NYR48_RS06685 PF08666 SAF domain NYR48_RS06685 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NYR48_RS06690 PF01925 Sulfite exporter TauE/SafE NYR48_RS06695 PF05163 DinB family NYR48_RS06700 PF18801 response regulator aspartate phosphatase H, N terminal NYR48_RS06710 PF01471 Putative peptidoglycan binding domain NYR48_RS06710 PF01510 N-acetylmuramoyl-L-alanine amidase NYR48_RS06710 PF01476 LysM domain NYR48_RS06715 PF08000 Bacterial PH domain NYR48_RS06720 PF05908 Poly-gamma-glutamate hydrolase NYR48_RS06725 PF06114 IrrE N-terminal-like domain NYR48_RS06730 PF01381 Helix-turn-helix NYR48_RS06745 PF01695 IstB-like ATP binding protein NYR48_RS06760 PF17356 Phage-like element PBSX protein XtrA NYR48_RS06765 PF08281 Sigma-70, region 4 NYR48_RS06770 PF03592 Terminase small subunit NYR48_RS06770 PF10668 Phage terminase small subunit NYR48_RS06775 PF04466 Phage terminase large subunit NYR48_RS06775 PF17288 Terminase RNAseH like domain NYR48_RS06780 PF04860 Phage portal protein NYR48_RS06785 PF14550 Putative phage serine protease XkdF NYR48_RS06790 PF05065 Phage capsid family NYR48_RS06795 PF11436 Protein of unknown function (DUF3199) NYR48_RS06800 PF12206 Domain of unknown function (DUF3599) NYR48_RS06805 PF04883 Bacteriophage HK97-gp10, putative tail-component NYR48_RS06820 PF04984 Phage tail sheath protein subtilisin-like domain NYR48_RS06820 PF17481 Phage tail sheath protein beta-sandwich domain NYR48_RS06820 PF17482 Phage tail sheath C-terminal domain NYR48_RS06825 PF09393 Phage tail tube protein NYR48_RS06830 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC NYR48_RS06840 PF01464 Transglycosylase SLT domain NYR48_RS06840 PF01464 Transglycosylase SLT domain NYR48_RS06840 PF01464 Transglycosylase SLT domain NYR48_RS06845 PF01476 LysM domain NYR48_RS06855 PF10844 Protein of unknown function (DUF2577) NYR48_RS06860 PF10934 Protein of unknown function (DUF2634) NYR48_RS06865 PF04865 Baseplate J-like protein NYR48_RS06870 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) NYR48_RS06890 PF09693 Phage uncharacterised protein (Phage_XkdX) NYR48_RS06900 PF10779 Haemolysin XhlA NYR48_RS06905 PF04688 SPP1 phage holin NYR48_RS06910 PF01476 LysM domain NYR48_RS06910 PF01510 N-acetylmuramoyl-L-alanine amidase NYR48_RS06910 PF01471 Putative peptidoglycan binding domain NYR48_RS06920 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system NYR48_RS06925 PF14171 Toxin SpoIISA, type II toxin-antitoxin system NYR48_RS06930 PF01384 Phosphate transporter family NYR48_RS06935 PF01865 Protein of unknown function DUF47 NYR48_RS06940 PF13520 Amino acid permease NYR48_RS06945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR48_RS06950 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NYR48_RS06955 PF00535 Glycosyl transferase family 2 NYR48_RS06965 PF13180 PDZ domain NYR48_RS06970 PF07690 Major Facilitator Superfamily NYR48_RS06975 PF04951 D-aminopeptidase NYR48_RS06980 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS06985 PF12911 N-terminal TM domain of oligopeptide transport permease C NYR48_RS06985 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS06990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NYR48_RS06990 PF00005 ABC transporter NYR48_RS06995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NYR48_RS07000 PF02016 LD-carboxypeptidase N-terminal domain NYR48_RS07000 PF17676 LD-carboxypeptidase C-terminal domain NYR48_RS07005 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NYR48_RS07005 PF13378 Enolase C-terminal domain-like NYR48_RS07010 PF00877 NlpC/P60 family NYR48_RS07015 PF00005 ABC transporter NYR48_RS07015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NYR48_RS07020 PF10282 Lactonase, 7-bladed beta-propeller NYR48_RS07030 PF03061 Thioesterase superfamily NYR48_RS07035 PF13302 Acetyltransferase (GNAT) domain NYR48_RS07040 PF00893 Small Multidrug Resistance protein NYR48_RS07045 PF00893 Small Multidrug Resistance protein NYR48_RS07050 PF00551 Formyl transferase NYR48_RS07050 PF01842 ACT domain NYR48_RS07055 PF00696 Amino acid kinase family NYR48_RS07055 PF01472 PUA domain NYR48_RS07060 PF00171 Aldehyde dehydrogenase family NYR48_RS07065 PF02566 OsmC-like protein NYR48_RS07070 PF01047 MarR family NYR48_RS07075 PF02566 OsmC-like protein NYR48_RS07090 PF13181 Tetratricopeptide repeat NYR48_RS07090 PF00535 Glycosyl transferase family 2 NYR48_RS07100 PF12832 MFS_1 like family NYR48_RS07110 PF08267 Cobalamin-independent synthase, N-terminal domain NYR48_RS07110 PF01717 Cobalamin-independent synthase, Catalytic domain NYR48_RS07115 PF00082 Subtilase family NYR48_RS07120 PF01740 STAS domain NYR48_RS07125 PF02361 Cobalt transport protein NYR48_RS07130 PF00005 ABC transporter NYR48_RS07135 PF09819 ABC-type cobalt transport system, permease component NYR48_RS07140 PF00704 Glycosyl hydrolases family 18 NYR48_RS07140 PF01476 LysM domain NYR48_RS07145 PF11132 Transcriptional regulator protein (SplA) NYR48_RS07150 PF00571 CBS domain NYR48_RS07150 PF01769 Divalent cation transporter NYR48_RS07150 PF03448 MgtE intracellular N domain NYR48_RS07155 PF13411 MerR HTH family regulatory protein NYR48_RS07170 PF01047 MarR family NYR48_RS07180 PF01068 ATP dependent DNA ligase domain NYR48_RS07185 PF02735 Ku70/Ku80 beta-barrel domain NYR48_RS07190 PF09335 SNARE associated Golgi protein NYR48_RS07200 PF04542 Sigma-70 region 2 NYR48_RS07205 PF12791 Anti-sigma factor N-terminus NYR48_RS07210 PF00269 Small, acid-soluble spore proteins, alpha/beta type NYR48_RS07215 PF08876 Domain of unknown function (DUF1836) NYR48_RS07220 PF01435 Peptidase family M48 NYR48_RS07225 PF02386 Cation transport protein NYR48_RS07230 PF04239 Protein of unknown function (DUF421) NYR48_RS07240 PF01757 Acyltransferase family NYR48_RS07245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS07245 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS07245 PF00989 PAS fold NYR48_RS07245 PF13188 PAS domain NYR48_RS07245 PF13426 PAS domain NYR48_RS07250 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NYR48_RS07250 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NYR48_RS07260 PF01008 Initiation factor 2 subunit family NYR48_RS07265 PF01636 Phosphotransferase enzyme family NYR48_RS07270 PF00795 Carbon-nitrogen hydrolase NYR48_RS07275 PF00155 Aminotransferase class I and II NYR48_RS07280 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain NYR48_RS07280 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain NYR48_RS07290 PF00596 Class II Aldolase and Adducin N-terminal domain NYR48_RS07295 PF03079 ARD/ARD' family NYR48_RS07300 PF09388 Spo0E like sporulation regulatory protein NYR48_RS07305 PF02743 Cache domain NYR48_RS07305 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS07305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS07310 PF01047 MarR family NYR48_RS07315 PF00691 OmpA family NYR48_RS07315 PF13677 Membrane MotB of proton-channel complex MotA/MotB NYR48_RS07320 PF01618 MotA/TolQ/ExbB proton channel family NYR48_RS07325 PF10431 C-terminal, D2-small domain, of ClpB protein NYR48_RS07325 PF07724 AAA domain (Cdc48 subfamily) NYR48_RS07325 PF00004 ATPase family associated with various cellular activities (AAA) NYR48_RS07325 PF17871 AAA lid domain NYR48_RS07340 PF06508 Queuosine biosynthesis protein QueC NYR48_RS07345 PF01242 6-pyruvoyl tetrahydropterin synthase NYR48_RS07350 PF04055 Radical SAM superfamily NYR48_RS07355 PF14489 QueF-like protein NYR48_RS07360 PF01638 HxlR-like helix-turn-helix NYR48_RS07375 PF00270 DEAD/DEAH box helicase NYR48_RS07375 PF13749 Putative ATP-dependent DNA helicase recG C-terminal NYR48_RS07375 PF17191 RecG wedge domain NYR48_RS07380 PF11514 Protein of unknown function (DUF3219) NYR48_RS07385 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) NYR48_RS07395 PF07486 Cell Wall Hydrolase NYR48_RS07400 PF01943 Polysaccharide biosynthesis protein NYR48_RS07405 PF00578 AhpC/TSA family NYR48_RS07415 PF01321 Creatinase/Prolidase N-terminal domain NYR48_RS07415 PF00557 Metallopeptidase family M24 NYR48_RS07425 PF00356 Bacterial regulatory proteins, lacI family NYR48_RS07425 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NYR48_RS07430 PF03123 CAT RNA binding domain NYR48_RS07430 PF00874 PRD domain NYR48_RS07435 PF00367 phosphotransferase system, EIIB NYR48_RS07435 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NYR48_RS07435 PF02378 Phosphotransferase system, EIIC NYR48_RS07440 PF00381 PTS HPr component phosphorylation site NYR48_RS07445 PF05524 PEP-utilising enzyme, N-terminal NYR48_RS07445 PF00391 PEP-utilising enzyme, mobile domain NYR48_RS07445 PF02896 PEP-utilising enzyme, TIM barrel domain NYR48_RS07450 PF11132 Transcriptional regulator protein (SplA) NYR48_RS07460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NYR48_RS07460 PF02743 Cache domain NYR48_RS07460 PF00672 HAMP domain NYR48_RS07465 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NYR48_RS07465 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NYR48_RS07470 PF00188 Cysteine-rich secretory protein family NYR48_RS07475 PF03717 Penicillin-binding Protein dimerisation domain NYR48_RS07475 PF00905 Penicillin binding protein transpeptidase domain NYR48_RS07480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS07480 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS07480 PF00989 PAS fold NYR48_RS07480 PF08447 PAS fold NYR48_RS07485 PF00155 Aminotransferase class I and II NYR48_RS07495 PF00072 Response regulator receiver domain NYR48_RS07495 PF01584 CheW-like domain NYR48_RS07500 PF14177 YkyB-like protein NYR48_RS07505 PF07690 Major Facilitator Superfamily NYR48_RS07510 PF03734 L,D-transpeptidase catalytic domain NYR48_RS07510 PF01476 LysM domain NYR48_RS07515 PF10518 TAT (twin-arginine translocation) pathway signal sequence NYR48_RS07515 PF00149 Calcineurin-like phosphoesterase NYR48_RS07530 PF00563 EAL domain NYR48_RS07530 PF10388 EAL-domain associated signalling protein domain NYR48_RS07535 PF08796 Protein of unknown function (DUF1797) NYR48_RS07540 PF04308 Ribonuclease H-like NYR48_RS07545 PF14156 Antirepressor AbbA NYR48_RS07555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS07555 PF03466 LysR substrate binding domain NYR48_RS07560 PF00258 Flavodoxin NYR48_RS07570 PF00258 Flavodoxin NYR48_RS07575 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal NYR48_RS07575 PF14602 Hexapeptide repeat of succinyl-transferase NYR48_RS07575 PF00132 Bacterial transferase hexapeptide (six repeats) NYR48_RS07580 PF07687 Peptidase dimerisation domain NYR48_RS07580 PF01546 Peptidase family M20/M25/M40 NYR48_RS07585 PF03698 Uncharacterised protein family (UPF0180) NYR48_RS07590 PF00924 Mechanosensitive ion channel NYR48_RS07595 PF00578 AhpC/TSA family NYR48_RS07610 PF12804 MobA-like NTP transferase domain NYR48_RS07615 PF00899 ThiF family NYR48_RS07620 PF00994 Probable molybdopterin binding domain NYR48_RS07620 PF03453 MoeA N-terminal region (domain I and II) NYR48_RS07620 PF03454 MoeA C-terminal region (domain IV) NYR48_RS07625 PF03205 Molybdopterin guanine dinucleotide synthesis protein B NYR48_RS07630 PF02391 MoaE protein NYR48_RS07635 PF02597 ThiS family NYR48_RS07640 PF04893 Yip1 domain NYR48_RS07645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NYR48_RS07650 PF00005 ABC transporter NYR48_RS07655 PF02687 FtsX-like permease family NYR48_RS07655 PF12704 MacB-like periplasmic core domain NYR48_RS07660 PF00455 DeoR C terminal sensor domain NYR48_RS07660 PF08220 DeoR-like helix-turn-helix domain NYR48_RS07665 PF00294 pfkB family carbohydrate kinase NYR48_RS07670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NYR48_RS07670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NYR48_RS07675 PF10502 Signal peptidase, peptidase S26 NYR48_RS07685 PF12848 ABC transporter NYR48_RS07685 PF00005 ABC transporter NYR48_RS07690 PF02558 Ketopantoate reductase PanE/ApbA NYR48_RS07690 PF08546 Ketopantoate reductase PanE/ApbA C terminal NYR48_RS07695 PF02073 Thermophilic metalloprotease (M29) NYR48_RS07700 PF17447 Uncharacterized YkpC-like NYR48_RS07710 PF18277 AbrB C-terminal domain NYR48_RS07710 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NYR48_RS07715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS07715 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS07715 PF00989 PAS fold NYR48_RS07720 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like NYR48_RS07725 PF02254 TrkA-N domain NYR48_RS07725 PF02080 TrkA-C domain NYR48_RS07730 PF13382 Adenine deaminase C-terminal domain NYR48_RS07730 PF01979 Amidohydrolase family NYR48_RS07735 PF00753 Metallo-beta-lactamase superfamily NYR48_RS07735 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NYR48_RS07735 PF17770 Ribonuclease J C-terminal domain NYR48_RS07740 PF07288 Protein of unknown function (DUF1447) NYR48_RS07750 PF01327 Polypeptide deformylase NYR48_RS07760 PF10368 Putative cell-wall binding lipoprotein NYR48_RS07765 PF00698 Acyl transferase domain NYR48_RS07770 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS07770 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS07770 PF08659 KR domain NYR48_RS07770 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS07770 PF14765 Polyketide synthase dehydratase NYR48_RS07770 PF00501 AMP-binding enzyme NYR48_RS07770 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS07770 PF00550 Phosphopantetheine attachment site NYR48_RS07770 PF00668 Condensation domain NYR48_RS07775 PF14765 Polyketide synthase dehydratase NYR48_RS07775 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS07775 PF00550 Phosphopantetheine attachment site NYR48_RS07775 PF08659 KR domain NYR48_RS07775 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS07775 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS07780 PF00501 AMP-binding enzyme NYR48_RS07780 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS07780 PF00668 Condensation domain NYR48_RS07780 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS07780 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS07780 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS07780 PF08659 KR domain NYR48_RS07780 PF00550 Phosphopantetheine attachment site NYR48_RS07780 PF14765 Polyketide synthase dehydratase NYR48_RS07785 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS07785 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS07785 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS07785 PF08659 KR domain NYR48_RS07785 PF00550 Phosphopantetheine attachment site NYR48_RS07785 PF14765 Polyketide synthase dehydratase NYR48_RS07790 PF08659 KR domain NYR48_RS07790 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS07790 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS07790 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS07790 PF14765 Polyketide synthase dehydratase NYR48_RS07790 PF00550 Phosphopantetheine attachment site NYR48_RS07795 PF08659 KR domain NYR48_RS07795 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS07795 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS07795 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS07795 PF00550 Phosphopantetheine attachment site NYR48_RS07795 PF14765 Polyketide synthase dehydratase NYR48_RS07800 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS07800 PF08659 KR domain NYR48_RS07800 PF00550 Phosphopantetheine attachment site NYR48_RS07800 PF14765 Polyketide synthase dehydratase NYR48_RS07800 PF00501 AMP-binding enzyme NYR48_RS07800 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS07800 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS07800 PF00668 Condensation domain NYR48_RS07800 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS07805 PF11954 Domain of unknown function (DUF3471) NYR48_RS07805 PF00144 Beta-lactamase NYR48_RS07810 PF00676 Dehydrogenase E1 component NYR48_RS07815 PF02779 Transketolase, pyrimidine binding domain NYR48_RS07815 PF02780 Transketolase, C-terminal domain NYR48_RS07820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NYR48_RS07820 PF00364 Biotin-requiring enzyme NYR48_RS07820 PF02817 e3 binding domain NYR48_RS07825 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS07825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NYR48_RS07840 PF13790 SR1 protein NYR48_RS07845 PF01276 Orn/Lys/Arg decarboxylase, major domain NYR48_RS07845 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NYR48_RS07850 PF05256 Uncharacterised protein family (UPF0223) NYR48_RS07855 PF06335 Protein of unknown function (DUF1054) NYR48_RS07865 PF00459 Inositol monophosphatase family NYR48_RS07870 PF00583 Acetyltransferase (GNAT) family NYR48_RS07875 PF02868 Thermolysin metallopeptidase, alpha-helical domain NYR48_RS07875 PF01447 Thermolysin metallopeptidase, catalytic domain NYR48_RS07875 PF03413 Peptidase propeptide and YPEB domain NYR48_RS07875 PF07504 Fungalysin/Thermolysin Propeptide Motif NYR48_RS07880 PF08281 Sigma-70, region 4 NYR48_RS07880 PF04542 Sigma-70 region 2 NYR48_RS07885 PF13490 Putative zinc-finger NYR48_RS07895 PF17259 Family of unknown function (DUF5325) NYR48_RS07900 PF00009 Elongation factor Tu GTP binding domain NYR48_RS07900 PF14492 Elongation Factor G, domain II NYR48_RS07900 PF03144 Elongation factor Tu domain 2 NYR48_RS07900 PF00679 Elongation factor G C-terminus NYR48_RS07905 PF14036 YlaH-like protein NYR48_RS07910 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) NYR48_RS07915 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NYR48_RS07920 PF13638 PIN domain NYR48_RS07920 PF02562 PhoH-like protein NYR48_RS07930 PF04960 Glutaminase NYR48_RS07935 PF07408 Protein of unknown function (DUF1507) NYR48_RS07940 PF01098 Cell cycle protein NYR48_RS07945 PF00364 Biotin-requiring enzyme NYR48_RS07945 PF00289 Biotin carboxylase, N-terminal domain NYR48_RS07945 PF02785 Biotin carboxylase C-terminal domain NYR48_RS07945 PF02436 Conserved carboxylase domain NYR48_RS07945 PF00682 HMGL-like NYR48_RS07945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NYR48_RS07950 PF02628 Cytochrome oxidase assembly protein NYR48_RS07955 PF01040 UbiA prenyltransferase family NYR48_RS07960 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NYR48_RS07960 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NYR48_RS07960 PF00034 Cytochrome c NYR48_RS07965 PF00115 Cytochrome C and Quinol oxidase polypeptide I NYR48_RS07970 PF00510 Cytochrome c oxidase subunit III NYR48_RS07975 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NYR48_RS07980 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) NYR48_RS07985 PF08868 YugN-like family NYR48_RS07990 PF00571 CBS domain NYR48_RS07995 PF00188 Cysteine-rich secretory protein family NYR48_RS07995 PF14504 CAP-associated N-terminal NYR48_RS08000 PF14071 Putative coat protein NYR48_RS08005 PF14003 YlbE-like protein NYR48_RS08010 PF06133 Control of competence regulator ComK, YlbF/YmcA NYR48_RS08015 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) NYR48_RS08030 PF01467 Cytidylyltransferase-like NYR48_RS08035 PF07670 Nucleoside recognition NYR48_RS08040 PF01734 Patatin-like phospholipase NYR48_RS08045 PF05362 Lon protease (S16) C-terminal proteolytic domain NYR48_RS08045 PF13180 PDZ domain NYR48_RS08050 PF05636 HIGH Nucleotidyl Transferase NYR48_RS08055 PF02620 Large ribosomal RNA subunit accumulation protein YceD NYR48_RS08060 PF01783 Ribosomal L32p protein family NYR48_RS08070 PF00583 Acetyltransferase (GNAT) family NYR48_RS08075 PF02558 Ketopantoate reductase PanE/ApbA NYR48_RS08075 PF08546 Ketopantoate reductase PanE/ApbA C terminal NYR48_RS08080 PF10079 Bacillithiol biosynthesis BshC NYR48_RS08085 PF02381 MraZ protein, putative antitoxin-like NYR48_RS08090 PF01795 MraW methylase family NYR48_RS08100 PF03717 Penicillin-binding Protein dimerisation domain NYR48_RS08100 PF03793 PASTA domain NYR48_RS08100 PF00905 Penicillin binding protein transpeptidase domain NYR48_RS08105 PF03793 PASTA domain NYR48_RS08105 PF03717 Penicillin-binding Protein dimerisation domain NYR48_RS08105 PF00905 Penicillin binding protein transpeptidase domain NYR48_RS08110 PF01225 Mur ligase family, catalytic domain NYR48_RS08110 PF02875 Mur ligase family, glutamate ligase domain NYR48_RS08110 PF08245 Mur ligase middle domain NYR48_RS08115 PF00953 Glycosyl transferase family 4 NYR48_RS08115 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NYR48_RS08120 PF02875 Mur ligase family, glutamate ligase domain NYR48_RS08120 PF08245 Mur ligase middle domain NYR48_RS08125 PF01098 Cell cycle protein NYR48_RS08130 PF03033 Glycosyltransferase family 28 N-terminal domain NYR48_RS08130 PF04101 Glycosyltransferase family 28 C-terminal domain NYR48_RS08135 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NYR48_RS08135 PF01565 FAD binding domain NYR48_RS08140 PF08478 POTRA domain, FtsQ-type NYR48_RS08145 PF02491 SHS2 domain inserted in FTSA NYR48_RS08150 PF12327 FtsZ family, C-terminal domain NYR48_RS08150 PF00091 Tubulin/FtsZ family, GTPase domain NYR48_RS08155 PF05922 Peptidase inhibitor I9 NYR48_RS08155 PF00082 Subtilase family NYR48_RS08160 PF03419 Sporulation factor SpoIIGA NYR48_RS08165 PF04542 Sigma-70 region 2 NYR48_RS08165 PF04545 Sigma-70, region 4 NYR48_RS08170 PF04542 Sigma-70 region 2 NYR48_RS08170 PF04539 Sigma-70 region 3 NYR48_RS08170 PF04545 Sigma-70, region 4 NYR48_RS08175 PF00005 ABC transporter NYR48_RS08180 PF01546 Peptidase family M20/M25/M40 NYR48_RS08180 PF07687 Peptidase dimerisation domain NYR48_RS08185 PF05239 PRC-barrel domain NYR48_RS08190 PF02578 Multi-copper polyphenol oxidoreductase laccase NYR48_RS08195 PF01168 Alanine racemase, N-terminal domain NYR48_RS08200 PF04472 Cell division protein SepF NYR48_RS08205 PF02325 YGGT family NYR48_RS08210 PF01479 S4 domain NYR48_RS08210 PF17774 Putative RNA-binding domain in YlmH NYR48_RS08215 PF05103 DivIVA protein NYR48_RS08220 PF08264 Anticodon-binding domain of tRNA NYR48_RS08220 PF00133 tRNA synthetases class I (I, L, M and V) NYR48_RS08225 PF01258 Prokaryotic dksA/traR C4-type zinc finger NYR48_RS08230 PF01252 Signal peptidase (SPase) II NYR48_RS08235 PF01479 S4 domain NYR48_RS08235 PF00849 RNA pseudouridylate synthase NYR48_RS08240 PF00156 Phosphoribosyl transferase domain NYR48_RS08245 PF00860 Permease family NYR48_RS08250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NYR48_RS08250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NYR48_RS08255 PF01979 Amidohydrolase family NYR48_RS08260 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NYR48_RS08260 PF00117 Glutamine amidotransferase class-I NYR48_RS08265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NYR48_RS08265 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NYR48_RS08265 PF02142 MGS-like domain NYR48_RS08270 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NYR48_RS08270 PF00175 Oxidoreductase NAD-binding domain NYR48_RS08275 PF01180 Dihydroorotate dehydrogenase NYR48_RS08280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NYR48_RS08285 PF00156 Phosphoribosyl transferase domain NYR48_RS08290 PF01507 Phosphoadenosine phosphosulfate reductase family NYR48_RS08295 PF01384 Phosphate transporter family NYR48_RS08300 PF01747 ATP-sulfurylase NYR48_RS08300 PF14306 PUA-like domain NYR48_RS08310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NYR48_RS08315 PF01903 CbiX NYR48_RS08325 PF05670 NFACT protein RNA binding domain NYR48_RS08330 PF00689 Cation transporting ATPase, C-terminus NYR48_RS08330 PF00690 Cation transporter/ATPase, N-terminus NYR48_RS08335 PF08340 Domain of unknown function (DUF1732) NYR48_RS08335 PF03755 YicC-like family, N-terminal region NYR48_RS08340 PF04025 Domain of unknown function (DUF370) NYR48_RS08345 PF00625 Guanylate kinase NYR48_RS08350 PF01192 RNA polymerase Rpb6 NYR48_RS08355 PF04127 DNA / pantothenate metabolism flavoprotein NYR48_RS08355 PF02441 Flavoprotein NYR48_RS08360 PF00271 Helicase conserved C-terminal domain NYR48_RS08360 PF17764 3′ DNA-binding domain (3′BD) NYR48_RS08360 PF18074 Primosomal protein N C-terminal domain NYR48_RS08360 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NYR48_RS08360 PF04851 Type III restriction enzyme, res subunit NYR48_RS08365 PF01327 Polypeptide deformylase NYR48_RS08370 PF00551 Formyl transferase NYR48_RS08370 PF02911 Formyl transferase, C-terminal domain NYR48_RS08375 PF01189 16S rRNA methyltransferase RsmB/F NYR48_RS08375 PF01029 NusB family NYR48_RS08380 PF04055 Radical SAM superfamily NYR48_RS08390 PF00069 Protein kinase domain NYR48_RS08390 PF03793 PASTA domain NYR48_RS08395 PF03193 RsgA GTPase NYR48_RS08395 PF16745 RsgA N-terminal domain NYR48_RS08400 PF00834 Ribulose-phosphate 3 epimerase family NYR48_RS08405 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain NYR48_RS08405 PF04263 Thiamin pyrophosphokinase, catalytic domain NYR48_RS08410 PF08183 Stage V sporulation protein family NYR48_RS08415 PF00830 Ribosomal L28 family NYR48_RS08420 PF03780 Asp23 family, cell envelope-related function NYR48_RS08425 PF13684 Dihydroxyacetone kinase family NYR48_RS08425 PF02734 DAK2 domain NYR48_RS08430 PF01842 ACT domain NYR48_RS08430 PF03315 Serine dehydratase beta chain NYR48_RS08435 PF03313 Serine dehydratase alpha chain NYR48_RS08440 PF00270 DEAD/DEAH box helicase NYR48_RS08440 PF00271 Helicase conserved C-terminal domain NYR48_RS08440 PF17191 RecG wedge domain NYR48_RS08445 PF03061 Thioesterase superfamily NYR48_RS08450 PF02504 Fatty acid synthesis protein NYR48_RS08455 PF00698 Acyl transferase domain NYR48_RS08465 PF00550 Phosphopantetheine attachment site NYR48_RS08470 PF00035 Double-stranded RNA binding motif NYR48_RS08470 PF14622 Ribonuclease-III-like NYR48_RS08475 PF06470 SMC proteins Flexible Hinge Domain NYR48_RS08475 PF02463 RecF/RecN/SMC N terminal domain NYR48_RS08480 PF00448 SRP54-type protein, GTPase domain NYR48_RS08480 PF02881 SRP54-type protein, helical bundle domain NYR48_RS08490 PF04297 Putative helix-turn-helix protein, YlxM / p13 like NYR48_RS08495 PF00448 SRP54-type protein, GTPase domain NYR48_RS08495 PF02881 SRP54-type protein, helical bundle domain NYR48_RS08495 PF02978 Signal peptide binding domain NYR48_RS08500 PF00886 Ribosomal protein S16 NYR48_RS08510 PF11068 YlqD protein NYR48_RS08515 PF05239 PRC-barrel domain NYR48_RS08515 PF01782 RimM N-terminal domain NYR48_RS08520 PF01746 tRNA (Guanine-1)-methyltransferase NYR48_RS08525 PF01245 Ribosomal protein L19 NYR48_RS08530 PF01926 50S ribosome-binding GTPase NYR48_RS08535 PF01351 Ribonuclease HII NYR48_RS08545 PF01312 FlhB HrpN YscU SpaS Family NYR48_RS08550 PF00549 CoA-ligase NYR48_RS08550 PF08442 ATP-grasp domain NYR48_RS08555 PF00549 CoA-ligase NYR48_RS08555 PF02629 CoA binding domain NYR48_RS08560 PF02481 DNA recombination-mediator protein A NYR48_RS08565 PF01131 DNA topoisomerase NYR48_RS08565 PF01751 Toprim domain NYR48_RS08565 PF01396 Topoisomerase DNA binding C4 zinc finger NYR48_RS08570 PF01134 Glucose inhibited division protein A NYR48_RS08575 PF00589 Phage integrase family NYR48_RS08575 PF02899 Phage integrase, N-terminal SAM-like domain NYR48_RS08580 PF00227 Proteasome subunit NYR48_RS08585 PF10431 C-terminal, D2-small domain, of ClpB protein NYR48_RS08585 PF07724 AAA domain (Cdc48 subfamily) NYR48_RS08585 PF00004 ATPase family associated with various cellular activities (AAA) NYR48_RS08590 PF06018 CodY GAF-like domain NYR48_RS08590 PF08222 CodY helix-turn-helix domain NYR48_RS08595 PF00460 Flagella basal body rod protein NYR48_RS08600 PF00460 Flagella basal body rod protein NYR48_RS08600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NYR48_RS08605 PF02049 Flagellar hook-basal body complex protein FliE NYR48_RS08610 PF01514 Secretory protein of YscJ/FliF family NYR48_RS08610 PF08345 Flagellar M-ring protein C-terminal NYR48_RS08615 PF14842 FliG N-terminal domain NYR48_RS08615 PF01706 FliG C-terminal domain NYR48_RS08615 PF14841 FliG middle domain NYR48_RS08620 PF02108 Flagellar assembly protein FliH NYR48_RS08625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NYR48_RS08625 PF02874 ATP synthase alpha/beta family, beta-barrel domain NYR48_RS08625 PF18269 T3SS EscN ATPase C-terminal domain NYR48_RS08630 PF02050 Flagellar FliJ protein NYR48_RS08635 PF03448 MgtE intracellular N domain NYR48_RS08640 PF02120 Flagellar hook-length control protein FliK NYR48_RS08645 PF03963 Flagellar hook capping protein - N-terminal region NYR48_RS08650 PF00460 Flagella basal body rod protein NYR48_RS08650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NYR48_RS08655 PF06289 Flagellar and Swarming motility proteins NYR48_RS08660 PF03748 Flagellar basal body-associated protein FliL NYR48_RS08665 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NYR48_RS08665 PF02154 Flagellar motor switch protein FliM NYR48_RS08670 PF04509 CheC-like family NYR48_RS08670 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NYR48_RS08675 PF00072 Response regulator receiver domain NYR48_RS08680 PF04347 Flagellar biosynthesis protein, FliO NYR48_RS08685 PF00813 FliP family NYR48_RS08690 PF01313 Bacterial export proteins, family 3 NYR48_RS08695 PF01311 Bacterial export proteins, family 1 NYR48_RS08700 PF01312 FlhB HrpN YscU SpaS Family NYR48_RS08705 PF00771 FHIPEP family NYR48_RS08710 PF00448 SRP54-type protein, GTPase domain NYR48_RS08715 PF10609 NUBPL iron-transfer P-loop NTPase NYR48_RS08720 PF01339 CheB methylesterase NYR48_RS08720 PF00072 Response regulator receiver domain NYR48_RS08725 PF01584 CheW-like domain NYR48_RS08725 PF02895 Signal transducing histidine kinase, homodimeric domain NYR48_RS08725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS08725 PF01627 Hpt domain NYR48_RS08725 PF07194 P2 response regulator binding domain NYR48_RS08730 PF01584 CheW-like domain NYR48_RS08735 PF04509 CheC-like family NYR48_RS08740 PF03975 CheD chemotactic sensory transduction NYR48_RS08745 PF04545 Sigma-70, region 4 NYR48_RS08745 PF04542 Sigma-70 region 2 NYR48_RS08745 PF04539 Sigma-70 region 3 NYR48_RS08755 PF00318 Ribosomal protein S2 NYR48_RS08760 PF00889 Elongation factor TS NYR48_RS08765 PF00696 Amino acid kinase family NYR48_RS08770 PF01765 Ribosome recycling factor NYR48_RS08775 PF01255 Putative undecaprenyl diphosphate synthase NYR48_RS08785 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NYR48_RS08785 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NYR48_RS08785 PF13288 DXP reductoisomerase C-terminal domain NYR48_RS08790 PF17820 PDZ domain NYR48_RS08790 PF02163 Peptidase family M50 NYR48_RS08795 PF04073 Aminoacyl-tRNA editing domain NYR48_RS08795 PF03129 Anticodon binding domain NYR48_RS08795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NYR48_RS08805 PF02576 RimP N-terminal domain NYR48_RS08805 PF17384 RimP C-terminal SH3 domain NYR48_RS08810 PF00575 S1 RNA binding domain NYR48_RS08810 PF08529 NusA N-terminal domain NYR48_RS08810 PF13184 NusA-like KH domain NYR48_RS08815 PF04296 Protein of unknown function (DUF448) NYR48_RS08820 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NYR48_RS08825 PF00009 Elongation factor Tu GTP binding domain NYR48_RS08825 PF11987 Translation-initiation factor 2 NYR48_RS08825 PF04760 Translation initiation factor IF-2, N-terminal region NYR48_RS08830 PF04456 Protein of unknown function (DUF503) NYR48_RS08835 PF02033 Ribosome-binding factor A NYR48_RS08840 PF16198 tRNA pseudouridylate synthase B C-terminal domain NYR48_RS08840 PF01509 TruB family pseudouridylate synthase (N terminal domain) NYR48_RS08845 PF06574 FAD synthetase NYR48_RS08845 PF01687 Riboflavin kinase NYR48_RS08850 PF00312 Ribosomal protein S15 NYR48_RS08855 PF00013 KH domain NYR48_RS08855 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NYR48_RS08855 PF01138 3' exoribonuclease family, domain 1 NYR48_RS08855 PF03725 3' exoribonuclease family, domain 2 NYR48_RS08855 PF00575 S1 RNA binding domain NYR48_RS08860 PF01522 Polysaccharide deacetylase NYR48_RS08865 PF05193 Peptidase M16 inactive domain NYR48_RS08865 PF00675 Insulinase (Peptidase family M16) NYR48_RS08870 PF05239 PRC-barrel domain NYR48_RS08875 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NYR48_RS08875 PF16924 Dipicolinate synthase subunit A N-terminal domain NYR48_RS08880 PF02441 Flavoprotein NYR48_RS08885 PF01118 Semialdehyde dehydrogenase, NAD binding domain NYR48_RS08885 PF02774 Semialdehyde dehydrogenase, dimerisation domain NYR48_RS08890 PF00696 Amino acid kinase family NYR48_RS08890 PF13840 ACT domain NYR48_RS08895 PF00701 Dihydrodipicolinate synthetase family NYR48_RS08900 PF00753 Metallo-beta-lactamase superfamily NYR48_RS08900 PF17770 Ribonuclease J C-terminal domain NYR48_RS08900 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NYR48_RS08905 PF00574 Clp protease NYR48_RS08910 PF14035 YlzJ-like protein NYR48_RS08915 PF17854 FtsK alpha domain NYR48_RS08915 PF09397 Ftsk gamma domain NYR48_RS08915 PF01580 FtsK/SpoIIIE family NYR48_RS08920 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS08920 PF07702 UTRA domain NYR48_RS08925 PF07690 Major Facilitator Superfamily NYR48_RS08930 PF01047 MarR family NYR48_RS08935 PF03176 MMPL family NYR48_RS08940 PF05193 Peptidase M16 inactive domain NYR48_RS08945 PF05193 Peptidase M16 inactive domain NYR48_RS08945 PF00675 Insulinase (Peptidase family M16) NYR48_RS08955 PF11588 Protein of unknown function (DUF3243) NYR48_RS08960 PF11868 Protein of unknown function (DUF3388) NYR48_RS08965 PF13464 Domain of unknown function (DUF4115) NYR48_RS08970 PF01066 CDP-alcohol phosphatidyltransferase NYR48_RS08975 PF02464 Competence-damaged protein NYR48_RS08975 PF18146 Damage-inducible protein CinA KH domain NYR48_RS08975 PF00994 Probable molybdopterin binding domain NYR48_RS08980 PF00154 recA bacterial DNA recombination protein NYR48_RS08985 PF00144 Beta-lactamase NYR48_RS08990 PF01966 HD domain NYR48_RS08990 PF00013 KH domain NYR48_RS08990 PF12072 Domain of unknown function (DUF3552) NYR48_RS08995 PF13277 YmdB-like protein NYR48_RS09000 PF04232 Stage V sporulation protein S (SpoVS) NYR48_RS09005 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS09005 PF00107 Zinc-binding dehydrogenase NYR48_RS09010 PF00155 Aminotransferase class I and II NYR48_RS09015 PF00919 Uncharacterized protein family UPF0004 NYR48_RS09015 PF01938 TRAM domain NYR48_RS09015 PF04055 Radical SAM superfamily NYR48_RS09020 PF06133 Control of competence regulator ComK, YlbF/YmcA NYR48_RS09025 PF10628 Outer spore coat protein E (CotE) NYR48_RS09030 PF01624 MutS domain I NYR48_RS09030 PF05192 MutS domain III NYR48_RS09030 PF05190 MutS family domain IV NYR48_RS09030 PF00488 MutS domain V NYR48_RS09030 PF05188 MutS domain II NYR48_RS09035 PF01119 DNA mismatch repair protein, C-terminal domain NYR48_RS09035 PF08676 MutL C terminal dimerisation domain NYR48_RS09045 PF00753 Metallo-beta-lactamase superfamily NYR48_RS09050 PF00698 Acyl transferase domain NYR48_RS09055 PF00698 Acyl transferase domain NYR48_RS09060 PF00698 Acyl transferase domain NYR48_RS09065 PF00550 Phosphopantetheine attachment site NYR48_RS09070 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal NYR48_RS09070 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal NYR48_RS09075 PF00378 Enoyl-CoA hydratase/isomerase NYR48_RS09080 PF00378 Enoyl-CoA hydratase/isomerase NYR48_RS09085 PF00501 AMP-binding enzyme NYR48_RS09085 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS09085 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS09085 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS09085 PF00668 Condensation domain NYR48_RS09085 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09085 PF00550 Phosphopantetheine attachment site NYR48_RS09085 PF14765 Polyketide synthase dehydratase NYR48_RS09085 PF08659 KR domain NYR48_RS09090 PF14765 Polyketide synthase dehydratase NYR48_RS09090 PF00550 Phosphopantetheine attachment site NYR48_RS09090 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS09090 PF08659 KR domain NYR48_RS09090 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS09090 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS09095 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS09095 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS09095 PF14765 Polyketide synthase dehydratase NYR48_RS09095 PF08242 Methyltransferase domain NYR48_RS09095 PF08659 KR domain NYR48_RS09095 PF08242 Methyltransferase domain NYR48_RS09095 PF00550 Phosphopantetheine attachment site NYR48_RS09095 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS09095 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS09095 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS09095 PF08659 KR domain NYR48_RS09095 PF00550 Phosphopantetheine attachment site NYR48_RS09095 PF14765 Polyketide synthase dehydratase NYR48_RS09095 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS09100 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS09100 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS09100 PF14765 Polyketide synthase dehydratase NYR48_RS09100 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS09100 PF08659 KR domain NYR48_RS09100 PF00668 Condensation domain NYR48_RS09100 PF00550 Phosphopantetheine attachment site NYR48_RS09100 PF00501 AMP-binding enzyme NYR48_RS09100 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09105 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS09105 PF08242 Methyltransferase domain NYR48_RS09105 PF00550 Phosphopantetheine attachment site NYR48_RS09105 PF00975 Thioesterase domain NYR48_RS09105 PF14765 Polyketide synthase dehydratase NYR48_RS09105 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS09105 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS09110 PF00067 Cytochrome P450 NYR48_RS09115 PF14040 Deoxyribonuclease NucA/NucB NYR48_RS09120 PF06912 Protein of unknown function (DUF1275) NYR48_RS09130 PF00082 Subtilase family NYR48_RS09140 PF05908 Poly-gamma-glutamate hydrolase NYR48_RS09145 PF02566 OsmC-like protein NYR48_RS09150 PF00893 Small Multidrug Resistance protein NYR48_RS09155 PF00893 Small Multidrug Resistance protein NYR48_RS09165 PF12788 YmaF family NYR48_RS09175 PF17209 Hfq protein NYR48_RS09180 PF14157 YmzC-like protein NYR48_RS09190 PF07972 NrdI Flavodoxin like NYR48_RS09195 PF08343 Ribonucleotide reductase N-terminal NYR48_RS09195 PF00317 Ribonucleotide reductase, all-alpha domain NYR48_RS09195 PF02867 Ribonucleotide reductase, barrel domain NYR48_RS09200 PF00268 Ribonucleotide reductase, small chain NYR48_RS09210 PF01520 N-acetylmuramoyl-L-alanine amidase NYR48_RS09210 PF05036 Sporulation related domain NYR48_RS09215 PF17866 AAA lid domain NYR48_RS09215 PF00004 ATPase family associated with various cellular activities (AAA) NYR48_RS09220 PF13167 GTP-binding GTPase N-terminal NYR48_RS09220 PF01926 50S ribosome-binding GTPase NYR48_RS09220 PF16360 GTP-binding GTPase Middle Region NYR48_RS09225 PF06838 Methionine gamma-lyase NYR48_RS09230 PF13411 MerR HTH family regulatory protein NYR48_RS09235 PF00120 Glutamine synthetase, catalytic domain NYR48_RS09235 PF03951 Glutamine synthetase, beta-Grasp domain NYR48_RS09285 PF01464 Transglycosylase SLT domain NYR48_RS09285 PF10145 Phage-related minor tail protein NYR48_RS09285 PF01551 Peptidase family M23 NYR48_RS09305 PF04616 Glycosyl hydrolases family 43 NYR48_RS09305 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain NYR48_RS09310 PF00480 ROK family NYR48_RS09315 PF01261 Xylose isomerase-like TIM barrel NYR48_RS09320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NYR48_RS09320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NYR48_RS09325 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NYR48_RS09325 PF00391 PEP-utilising enzyme, mobile domain NYR48_RS09345 PF05163 DinB family NYR48_RS09350 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS09350 PF00107 Zinc-binding dehydrogenase NYR48_RS09355 PF00132 Bacterial transferase hexapeptide (six repeats) NYR48_RS09355 PF00101 Ribulose bisphosphate carboxylase, small chain NYR48_RS09380 PF17094 Uncharacterised protein family (UPF0715) NYR48_RS09390 PF04740 LXG domain of WXG superfamily NYR48_RS09390 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH NYR48_RS09410 PF16302 Domain of unknown function (DUF4944) NYR48_RS09430 PF18416 N-acetylglucosamine binding protein domain 2 NYR48_RS09430 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NYR48_RS09435 PF09680 Family of unknown function NYR48_RS09440 PF13302 Acetyltransferase (GNAT) domain NYR48_RS09455 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain NYR48_RS09455 PF12708 Pectate lyase superfamily protein NYR48_RS09460 PF00692 dUTPase NYR48_RS09465 PF05908 Poly-gamma-glutamate hydrolase NYR48_RS09480 PF10710 Protein of unknown function (DUF2512) NYR48_RS09490 PF01726 LexA DNA binding domain NYR48_RS09490 PF00717 Peptidase S24-like NYR48_RS09495 PF01476 LysM domain NYR48_RS09500 PF00239 Resolvase, N terminal domain NYR48_RS09505 PF05979 Bacterial protein of unknown function (DUF896) NYR48_RS09510 PF00456 Transketolase, thiamine diphosphate binding domain NYR48_RS09510 PF02780 Transketolase, C-terminal domain NYR48_RS09510 PF02779 Transketolase, pyrimidine binding domain NYR48_RS09515 PF10747 Sporulation inhibitor of replication protein SirA NYR48_RS09520 PF03672 Uncharacterised protein family (UPF0154) NYR48_RS09525 PF09388 Spo0E like sporulation regulatory protein NYR48_RS09530 PF02683 Cytochrome C biogenesis protein transmembrane region NYR48_RS09535 PF00072 Response regulator receiver domain NYR48_RS09540 PF07301 Protein of unknown function (DUF1453) NYR48_RS09545 PF11084 Protein of unknown function (DUF2621) NYR48_RS09555 PF08179 Small acid-soluble spore protein P family NYR48_RS09565 PF00694 Aconitase C-terminal domain NYR48_RS09565 PF00330 Aconitase family (aconitate hydratase) NYR48_RS09570 PF00578 AhpC/TSA family NYR48_RS09575 PF13040 Fur-regulated basic protein B NYR48_RS09580 PF08177 Small acid-soluble spore protein N family NYR48_RS09590 PF03061 Thioesterase superfamily NYR48_RS09600 PF01521 Iron-sulphur cluster biosynthesis NYR48_RS09605 PF02660 Glycerol-3-phosphate acyltransferase NYR48_RS09610 PF13380 CoA binding domain NYR48_RS09615 PF00204 DNA gyrase B NYR48_RS09615 PF00986 DNA gyrase B subunit, carboxyl terminus NYR48_RS09615 PF01751 Toprim domain NYR48_RS09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS09620 PF03989 DNA gyrase C-terminal domain, beta-propeller NYR48_RS09620 PF00521 DNA gyrase/topoisomerase IV, subunit A NYR48_RS09635 PF01235 Sodium:alanine symporter family NYR48_RS09640 PF00294 pfkB family carbohydrate kinase NYR48_RS09645 PF00107 Zinc-binding dehydrogenase NYR48_RS09645 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS09650 PF01081 KDPG and KHG aldolase NYR48_RS09655 PF03786 D-mannonate dehydratase (UxuA) NYR48_RS09660 PF00106 short chain dehydrogenase NYR48_RS09665 PF00356 Bacterial regulatory proteins, lacI family NYR48_RS09670 PF07690 Major Facilitator Superfamily NYR48_RS09680 PF13761 Domain of unknown function (DUF4166) NYR48_RS09695 PF12704 MacB-like periplasmic core domain NYR48_RS09695 PF02687 FtsX-like permease family NYR48_RS09695 PF00005 ABC transporter NYR48_RS09715 PF00942 Cellulose binding domain NYR48_RS09715 PF00150 Cellulase (glycosyl hydrolase family 5) NYR48_RS09725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS09725 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS09730 PF00072 Response regulator receiver domain NYR48_RS09730 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS09735 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain NYR48_RS09735 PF17189 Glycosyl hydrolase family 30 beta sandwich domain NYR48_RS09740 PF03422 Carbohydrate binding module (family 6) NYR48_RS09740 PF04616 Glycosyl hydrolases family 43 NYR48_RS09745 PF00501 AMP-binding enzyme NYR48_RS09745 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09745 PF00668 Condensation domain NYR48_RS09745 PF00550 Phosphopantetheine attachment site NYR48_RS09745 PF00975 Thioesterase domain NYR48_RS09750 PF00501 AMP-binding enzyme NYR48_RS09750 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09750 PF00668 Condensation domain NYR48_RS09750 PF00550 Phosphopantetheine attachment site NYR48_RS09755 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09755 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS09755 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS09755 PF00668 Condensation domain NYR48_RS09755 PF00202 Aminotransferase class-III NYR48_RS09755 PF00501 AMP-binding enzyme NYR48_RS09755 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS09755 PF00550 Phosphopantetheine attachment site NYR48_RS09760 PF00698 Acyl transferase domain NYR48_RS09770 PF01144 Coenzyme A transferase NYR48_RS09775 PF01144 Coenzyme A transferase NYR48_RS09785 PF00067 Cytochrome P450 NYR48_RS09790 PF04055 Radical SAM superfamily NYR48_RS09790 PF06968 Biotin and Thiamin Synthesis associated domain NYR48_RS09800 PF00155 Aminotransferase class I and II NYR48_RS09805 PF00202 Aminotransferase class-III NYR48_RS09810 PF03744 6-carboxyhexanoate--CoA ligase NYR48_RS09815 PF04138 GtrA-like protein NYR48_RS09820 PF00483 Nucleotidyl transferase NYR48_RS09825 PF09335 SNARE associated Golgi protein NYR48_RS09830 PF01039 Carboxyl transferase domain NYR48_RS09835 PF00378 Enoyl-CoA hydratase/isomerase NYR48_RS09840 PF00682 HMGL-like NYR48_RS09845 PF00364 Biotin-requiring enzyme NYR48_RS09850 PF02785 Biotin carboxylase C-terminal domain NYR48_RS09850 PF00289 Biotin carboxylase, N-terminal domain NYR48_RS09850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NYR48_RS09855 PF00501 AMP-binding enzyme NYR48_RS09855 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NYR48_RS09860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NYR48_RS09860 PF02770 Acyl-CoA dehydrogenase, middle domain NYR48_RS09865 PF02638 Glycosyl hydrolase-like 10 NYR48_RS09870 PF07098 Protein of unknown function (DUF1360) NYR48_RS09875 PF00501 AMP-binding enzyme NYR48_RS09875 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09875 PF00668 Condensation domain NYR48_RS09875 PF00550 Phosphopantetheine attachment site NYR48_RS09875 PF00975 Thioesterase domain NYR48_RS09880 PF00501 AMP-binding enzyme NYR48_RS09880 PF00550 Phosphopantetheine attachment site NYR48_RS09880 PF00668 Condensation domain NYR48_RS09880 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09885 PF00550 Phosphopantetheine attachment site NYR48_RS09885 PF00501 AMP-binding enzyme NYR48_RS09885 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09885 PF00668 Condensation domain NYR48_RS09890 PF00550 Phosphopantetheine attachment site NYR48_RS09890 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09890 PF00501 AMP-binding enzyme NYR48_RS09890 PF00668 Condensation domain NYR48_RS09895 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS09895 PF00501 AMP-binding enzyme NYR48_RS09895 PF00668 Condensation domain NYR48_RS09895 PF00550 Phosphopantetheine attachment site NYR48_RS09900 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NYR48_RS09905 PF01263 Aldose 1-epimerase NYR48_RS09910 PF01554 MatE NYR48_RS09915 PF16800 IseA DL-endopeptidase inhibitor NYR48_RS09925 PF00589 Phage integrase family NYR48_RS09930 PF12728 Helix-turn-helix domain NYR48_RS09940 PF07690 Major Facilitator Superfamily NYR48_RS09950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NYR48_RS09950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NYR48_RS09950 PF03129 Anticodon binding domain NYR48_RS09950 PF02824 TGS domain NYR48_RS09955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS09955 PF03466 LysR substrate binding domain NYR48_RS09960 PF08240 Alcohol dehydrogenase GroES-like domain NYR48_RS09960 PF00107 Zinc-binding dehydrogenase NYR48_RS09965 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NYR48_RS09965 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS09970 PF00310 Glutamine amidotransferases class-II NYR48_RS09970 PF04898 Glutamate synthase central domain NYR48_RS09970 PF01645 Conserved region in glutamate synthase NYR48_RS09970 PF01493 GXGXG motif NYR48_RS09975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS09975 PF03466 LysR substrate binding domain NYR48_RS09980 PF00696 Amino acid kinase family NYR48_RS09980 PF01472 PUA domain NYR48_RS09985 PF14748 Pyrroline-5-carboxylate reductase dimerisation NYR48_RS09985 PF03807 NADP oxidoreductase coenzyme F420-dependent NYR48_RS09990 PF02334 Replication terminator protein NYR48_RS09995 PF00106 short chain dehydrogenase NYR48_RS10000 PF06103 Bacterial protein of unknown function (DUF948) NYR48_RS10010 PF07690 Major Facilitator Superfamily NYR48_RS10015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NYR48_RS10015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NYR48_RS10020 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NYR48_RS10020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NYR48_RS10025 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NYR48_RS10025 PF00384 Molybdopterin oxidoreductase NYR48_RS10025 PF01568 Molydopterin dinucleotide binding domain NYR48_RS10055 PF04740 LXG domain of WXG superfamily NYR48_RS10055 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH NYR48_RS10060 PF01588 Putative tRNA binding domain NYR48_RS10065 PF12833 Helix-turn-helix domain NYR48_RS10065 PF07883 Cupin domain NYR48_RS10070 PF13305 Tetracyclin repressor-like, C-terminal domain NYR48_RS10070 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS10075 PF00753 Metallo-beta-lactamase superfamily NYR48_RS10085 PF01022 Bacterial regulatory protein, arsR family NYR48_RS10095 PF04238 Protein of unknown function (DUF420) NYR48_RS10100 PF18846 Bacterial archaeo-eukaryotic release factor family 5 NYR48_RS10110 PF02016 LD-carboxypeptidase N-terminal domain NYR48_RS10110 PF17676 LD-carboxypeptidase C-terminal domain NYR48_RS10120 PF06725 3D domain NYR48_RS10120 PF01476 LysM domain NYR48_RS10125 PF00270 DEAD/DEAH box helicase NYR48_RS10125 PF00271 Helicase conserved C-terminal domain NYR48_RS10125 PF00570 HRDC domain NYR48_RS10125 PF09382 RQC domain NYR48_RS10125 PF16124 RecQ zinc-binding NYR48_RS10135 PF02525 Flavodoxin-like fold NYR48_RS10140 PF01258 Prokaryotic dksA/traR C4-type zinc finger NYR48_RS10155 PF00011 Hsp20/alpha crystallin family NYR48_RS10170 PF08000 Bacterial PH domain NYR48_RS10185 PF00171 Aldehyde dehydrogenase family NYR48_RS10190 PF13243 Squalene-hopene cyclase C-terminal domain NYR48_RS10190 PF13249 Squalene-hopene cyclase N-terminal domain NYR48_RS10195 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NYR48_RS10195 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NYR48_RS10200 PF00209 Sodium:neurotransmitter symporter family NYR48_RS10205 PF01758 Sodium Bile acid symporter family NYR48_RS10210 PF00753 Metallo-beta-lactamase superfamily NYR48_RS10215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NYR48_RS10215 PF00364 Biotin-requiring enzyme NYR48_RS10215 PF02817 e3 binding domain NYR48_RS10220 PF02779 Transketolase, pyrimidine binding domain NYR48_RS10220 PF16870 2-oxoglutarate dehydrogenase C-terminal NYR48_RS10220 PF00676 Dehydrogenase E1 component NYR48_RS10225 PF00092 von Willebrand factor type A domain NYR48_RS10230 PF07728 AAA domain (dynein-related subfamily) NYR48_RS10235 PF13627 Prokaryotic lipoprotein-attachment site NYR48_RS10235 PF00080 Copper/zinc superoxide dismutase (SODC) NYR48_RS10240 PF01476 LysM domain NYR48_RS10240 PF00877 NlpC/P60 family NYR48_RS10245 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase NYR48_RS10250 PF02457 DisA bacterial checkpoint controller nucleotide-binding NYR48_RS10250 PF10372 Bacterial membrane-spanning protein N-terminus NYR48_RS10255 PF01554 MatE NYR48_RS10260 PF01740 STAS domain NYR48_RS10265 PF02585 GlcNAc-PI de-N-acetylase NYR48_RS10270 PF08830 Protein of unknown function (DUF1806) NYR48_RS10280 PF00892 EamA-like transporter family NYR48_RS10295 PF14552 Tautomerase enzyme NYR48_RS10305 PF01638 HxlR-like helix-turn-helix NYR48_RS10310 PF00881 Nitroreductase family NYR48_RS10315 PF01738 Dienelactone hydrolase family NYR48_RS10320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR48_RS10325 PF11755 Protein of unknown function (DUF3311) NYR48_RS10330 PF00474 Sodium:solute symporter family NYR48_RS10340 PF00232 Glycosyl hydrolase family 1 NYR48_RS10345 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS10345 PF07702 UTRA domain NYR48_RS10350 PF01471 Putative peptidoglycan binding domain NYR48_RS10350 PF03572 Peptidase family S41 NYR48_RS10350 PF17820 PDZ domain NYR48_RS10355 PF08241 Methyltransferase domain NYR48_RS10365 PF02557 D-alanyl-D-alanine carboxypeptidase NYR48_RS10370 PF01048 Phosphorylase superfamily NYR48_RS10380 PF14191 YodL-like NYR48_RS10385 PF01569 PAP2 superfamily NYR48_RS10390 PF14162 YozD-like protein NYR48_RS10410 PF06855 YozE SAM-like fold NYR48_RS10415 PF14122 YokU-like protein, putative antitoxin NYR48_RS10420 PF12544 Lysine-2,3-aminomutase NYR48_RS10425 PF00583 Acetyltransferase (GNAT) family NYR48_RS10430 PF07687 Peptidase dimerisation domain NYR48_RS10430 PF01546 Peptidase family M20/M25/M40 NYR48_RS10435 PF01144 Coenzyme A transferase NYR48_RS10440 PF01144 Coenzyme A transferase NYR48_RS10445 PF00202 Aminotransferase class-III NYR48_RS10460 PF00583 Acetyltransferase (GNAT) family NYR48_RS10465 PF00535 Glycosyl transferase family 2 NYR48_RS10480 PF12996 DUF based on E. rectale Gene description (DUF3880) NYR48_RS10485 PF02333 Phytase NYR48_RS10490 PF08485 Polysaccharide biosynthesis protein C-terminal NYR48_RS10490 PF02719 Polysaccharide biosynthesis protein NYR48_RS10500 PF11518 Protein of unknown function (DUF3221) NYR48_RS10520 PF18801 response regulator aspartate phosphatase H, N terminal NYR48_RS10530 PF00171 Aldehyde dehydrogenase family NYR48_RS10540 PF18801 response regulator aspartate phosphatase H, N terminal NYR48_RS10560 PF03807 NADP oxidoreductase coenzyme F420-dependent NYR48_RS10560 PF14748 Pyrroline-5-carboxylate reductase dimerisation NYR48_RS10565 PF05525 Branched-chain amino acid transport protein NYR48_RS10575 PF05437 Branched-chain amino acid transport protein (AzlD) NYR48_RS10580 PF03591 AzlC protein NYR48_RS10585 PF00155 Aminotransferase class I and II NYR48_RS10585 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS10620 PF02719 Polysaccharide biosynthesis protein NYR48_RS10625 PF01641 SelR domain NYR48_RS10630 PF01625 Peptide methionine sulfoxide reductase NYR48_RS10635 PF01047 MarR family NYR48_RS10640 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) NYR48_RS10645 PF13472 GDSL-like Lipase/Acylhydrolase family NYR48_RS10650 PF02630 SCO1/SenC NYR48_RS10655 PF10751 Protein of unknown function (DUF2535) NYR48_RS10660 PF00585 C-terminal regulatory domain of Threonine dehydratase NYR48_RS10660 PF00291 Pyridoxal-phosphate dependent enzyme NYR48_RS10665 PF08461 Ribonuclease R winged-helix domain NYR48_RS10665 PF00158 Sigma-54 interaction domain NYR48_RS10670 PF03006 Haemolysin-III related NYR48_RS10680 PF00186 Dihydrofolate reductase NYR48_RS10685 PF00303 Thymidylate synthase NYR48_RS10690 PF14005 YpjP-like protein NYR48_RS10695 PF04445 Putative SAM-dependent methyltransferase NYR48_RS10700 PF06491 Disulphide isomerase NYR48_RS10705 PF00920 Dehydratase family NYR48_RS10710 PF08712 Scaffold protein Nfu/NifU N terminal NYR48_RS10710 PF13769 Virulence factor NYR48_RS10715 PF01966 HD domain NYR48_RS10720 PF00255 Glutathione peroxidase NYR48_RS10725 PF04204 Homoserine O-succinyltransferase NYR48_RS10730 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase NYR48_RS10730 PF00534 Glycosyl transferases group 1 NYR48_RS10740 PF00313 'Cold-shock' DNA-binding domain NYR48_RS10750 PF10819 Protein of unknown function (DUF2564) NYR48_RS10755 PF10782 Zinc-finger NYR48_RS10760 PF13456 Reverse transcriptase-like NYR48_RS10765 PF02592 Putative vitamin uptake transporter NYR48_RS10770 PF13456 Reverse transcriptase-like NYR48_RS10780 PF01367 5'-3' exonuclease, C-terminal SAM fold NYR48_RS10780 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NYR48_RS10790 PF10752 Protein of unknown function (DUF2533) NYR48_RS10795 PF00350 Dynamin family NYR48_RS10805 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family NYR48_RS10810 PF02797 Chalcone and stilbene synthases, C-terminal domain NYR48_RS10810 PF00195 Chalcone and stilbene synthases, N-terminal domain NYR48_RS10830 PF04239 Protein of unknown function (DUF421) NYR48_RS10835 PF00857 Isochorismatase family NYR48_RS10845 PF00860 Permease family NYR48_RS10850 PF00156 Phosphoribosyl transferase domain NYR48_RS10855 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NYR48_RS10860 PF13307 Helicase C-terminal domain NYR48_RS10870 PF14139 YpzG-like protein NYR48_RS10875 PF02926 THUMP domain NYR48_RS10875 PF01170 Putative RNA methylase family UPF0020 NYR48_RS10885 PF05103 DivIVA protein NYR48_RS10890 PF06908 YspA SLOG family NYR48_RS10895 PF11122 Inner spore coat protein D NYR48_RS10905 PF13482 RNase_H superfamily NYR48_RS10910 PF00270 DEAD/DEAH box helicase NYR48_RS10910 PF09369 Domain of unknown function (DUF1998) NYR48_RS10910 PF00271 Helicase conserved C-terminal domain NYR48_RS10915 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NYR48_RS10925 PF14179 YppG-like protein NYR48_RS10930 PF14178 YppF-like protein NYR48_RS10935 PF08807 Bacterial domain of unknown function (DUF1798) NYR48_RS10940 PF17522 Family of unknown function (DUF5446) NYR48_RS10950 PF10720 Protein of unknown function (DUF2515) NYR48_RS10955 PF03838 Recombination protein U NYR48_RS10960 PF00905 Penicillin binding protein transpeptidase domain NYR48_RS10960 PF00912 Transglycosylase NYR48_RS10970 PF10576 Iron-sulfur binding domain of endonuclease III NYR48_RS10970 PF00633 Helix-hairpin-helix motif NYR48_RS10970 PF00730 HhH-GPD superfamily base excision DNA repair protein NYR48_RS10975 PF07261 Replication initiation and membrane attachment NYR48_RS10980 PF01336 OB-fold nucleic acid binding domain NYR48_RS10980 PF00152 tRNA synthetases class II (D, K and N) NYR48_RS10985 PF00155 Aminotransferase class I and II NYR48_RS10990 PF03413 Peptidase propeptide and YPEB domain NYR48_RS10990 PF17881 Domain of unknown function (DUF5590) NYR48_RS10995 PF14084 Protein of unknown function (DUF4264) NYR48_RS11000 PF04851 Type III restriction enzyme, res subunit NYR48_RS11000 PF00929 Exonuclease NYR48_RS11000 PF13307 Helicase C-terminal domain NYR48_RS11005 PF02261 Aspartate decarboxylase NYR48_RS11010 PF02569 Pantoate-beta-alanine ligase NYR48_RS11015 PF02548 Ketopantoate hydroxymethyltransferase NYR48_RS11020 PF08279 HTH domain NYR48_RS11020 PF02237 Biotin protein ligase C terminal domain NYR48_RS11020 PF03099 Biotin/lipoate A/B protein ligase family NYR48_RS11025 PF01743 Poly A polymerase head domain NYR48_RS11025 PF13735 tRNA nucleotidyltransferase domain 2 putative NYR48_RS11025 PF12627 Probable RNA and SrmB- binding site of polymerase A NYR48_RS11030 PF13439 Glycosyltransferase Family 4 NYR48_RS11030 PF00534 Glycosyl transferases group 1 NYR48_RS11035 PF02585 GlcNAc-PI de-N-acetylase NYR48_RS11040 PF02142 MGS-like domain NYR48_RS11045 PF05173 Dihydrodipicolinate reductase, C-terminus NYR48_RS11045 PF01113 Dihydrodipicolinate reductase, N-terminus NYR48_RS11050 PF03819 MazG nucleotide pyrophosphohydrolase domain NYR48_RS11055 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR48_RS11055 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NYR48_RS11060 PF00190 Cupin NYR48_RS11065 PF09577 Sporulation protein YpjB (SpoYpjB) NYR48_RS11070 PF07187 Protein of unknown function (DUF1405) NYR48_RS11075 PF00032 Cytochrome b(C-terminal)/b6/petD NYR48_RS11075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NYR48_RS11080 PF00033 Cytochrome b/b6/petB NYR48_RS11085 PF00355 Rieske [2Fe-2S] domain NYR48_RS11090 PF10673 Protein of unknown function (DUF2487) NYR48_RS11095 PF08858 IDEAL domain NYR48_RS11095 PF08864 UPF0302 domain NYR48_RS11105 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NYR48_RS11110 PF01842 ACT domain NYR48_RS11110 PF02153 Prephenate dehydrogenase NYR48_RS11115 PF00155 Aminotransferase class I and II NYR48_RS11120 PF00290 Tryptophan synthase alpha chain NYR48_RS11125 PF00291 Pyridoxal-phosphate dependent enzyme NYR48_RS11130 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NYR48_RS11135 PF00218 Indole-3-glycerol phosphate synthase NYR48_RS11140 PF02885 Glycosyl transferase family, helical bundle domain NYR48_RS11140 PF00591 Glycosyl transferase family, a/b domain NYR48_RS11145 PF04715 Anthranilate synthase component I, N terminal region NYR48_RS11145 PF00425 chorismate binding enzyme NYR48_RS11150 PF07736 Chorismate mutase type I NYR48_RS11155 PF01761 3-dehydroquinate synthase NYR48_RS11160 PF01264 Chorismate synthase NYR48_RS11165 PF01739 CheR methyltransferase, SAM binding domain NYR48_RS11165 PF03705 CheR methyltransferase, all-alpha domain NYR48_RS11170 PF00334 Nucleoside diphosphate kinase NYR48_RS11175 PF00348 Polyprenyl synthetase NYR48_RS11180 PF01209 ubiE/COQ5 methyltransferase family NYR48_RS11185 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 NYR48_RS11190 PF02081 Tryptophan RNA-binding attenuator protein NYR48_RS11195 PF01227 GTP cyclohydrolase I NYR48_RS11200 PF00216 Bacterial DNA-binding protein NYR48_RS11205 PF09547 Stage IV sporulation protein A (spore_IV_A) NYR48_RS11215 PF10966 Protein of unknown function (DUF2768) NYR48_RS11220 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NYR48_RS11220 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NYR48_RS11225 PF01926 50S ribosome-binding GTPase NYR48_RS11225 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NYR48_RS11235 PF14140 YpzI-like protein NYR48_RS11240 PF01070 FMN-dependent dehydrogenase NYR48_RS11245 PF00575 S1 RNA binding domain NYR48_RS11250 PF02224 Cytidylate kinase NYR48_RS11255 PF17313 Family of unknown function (DUF5359) NYR48_RS11260 PF07238 PilZ domain NYR48_RS11260 PF12945 Flagellar protein YcgR NYR48_RS11265 PF03413 Peptidase propeptide and YPEB domain NYR48_RS11265 PF14620 YpeB sporulation NYR48_RS11270 PF07486 Cell Wall Hydrolase NYR48_RS11270 PF01471 Putative peptidoglycan binding domain NYR48_RS11275 PF13367 PrsW family intramembrane metalloprotease NYR48_RS11285 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NYR48_RS11285 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NYR48_RS11290 PF05389 Negative regulator of genetic competence (MecA) NYR48_RS11295 PF00149 Calcineurin-like phosphoesterase NYR48_RS11300 PF10864 Protein of unknown function (DUF2663) NYR48_RS11305 PF01476 LysM domain NYR48_RS11310 PF02517 CPBP intramembrane metalloprotease NYR48_RS11315 PF00270 DEAD/DEAH box helicase NYR48_RS11315 PF00271 Helicase conserved C-terminal domain NYR48_RS11320 PF14493 Helix-turn-helix domain NYR48_RS11330 PF12822 ECF transporter, substrate-specific component NYR48_RS11335 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NYR48_RS11335 PF01842 ACT domain NYR48_RS11335 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NYR48_RS11345 PF04542 Sigma-70 region 2 NYR48_RS11345 PF08281 Sigma-70, region 4 NYR48_RS11350 PF00672 HAMP domain NYR48_RS11350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS11350 PF18698 Histidine kinase sensor domain NYR48_RS11350 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS11350 PF00989 PAS fold NYR48_RS11355 PF00072 Response regulator receiver domain NYR48_RS11355 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS11360 PF01578 Cytochrome C assembly protein NYR48_RS11365 PF05140 ResB-like family NYR48_RS11370 PF00578 AhpC/TSA family NYR48_RS11375 PF00849 RNA pseudouridylate synthase NYR48_RS11375 PF01479 S4 domain NYR48_RS11380 PF07670 Nucleoside recognition NYR48_RS11385 PF07670 Nucleoside recognition NYR48_RS11390 PF00768 D-alanyl-D-alanine carboxypeptidase NYR48_RS11390 PF07943 Penicillin-binding protein 5, C-terminal domain NYR48_RS11395 PF13047 Protein of unknown function (DUF3907) NYR48_RS11400 PF04079 Segregation and condensation complex subunit ScpB NYR48_RS11405 PF02616 Segregation and condensation protein ScpA NYR48_RS11415 PF03745 Domain of unknown function (DUF309) NYR48_RS11420 PF00583 Acetyltransferase (GNAT) family NYR48_RS11425 PF00885 6,7-dimethyl-8-ribityllumazine synthase NYR48_RS11430 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NYR48_RS11430 PF00925 GTP cyclohydrolase II NYR48_RS11435 PF00677 Lumazine binding domain NYR48_RS11440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NYR48_RS11440 PF01872 RibD C-terminal domain NYR48_RS11450 PF10502 Signal peptidase, peptidase S26 NYR48_RS11460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NYR48_RS11465 PF06207 Protein of unknown function (DUF1002) NYR48_RS11470 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NYR48_RS11470 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NYR48_RS11475 PF03323 Bacillus/Clostridium GerA spore germination protein NYR48_RS11480 PF14097 Stage V sporulation protein AE1 NYR48_RS11485 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NYR48_RS11490 PF07451 Stage V sporulation protein AD (SpoVAD) NYR48_RS11495 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NYR48_RS11500 PF13782 Stage V sporulation protein AB NYR48_RS11505 PF12164 Stage V sporulation protein AA NYR48_RS11510 PF04542 Sigma-70 region 2 NYR48_RS11510 PF04539 Sigma-70 region 3 NYR48_RS11510 PF04545 Sigma-70, region 4 NYR48_RS11515 PF13581 Histidine kinase-like ATPase domain NYR48_RS11520 PF01740 STAS domain NYR48_RS11525 PF07943 Penicillin-binding protein 5, C-terminal domain NYR48_RS11525 PF00768 D-alanyl-D-alanine carboxypeptidase NYR48_RS11530 PF01048 Phosphorylase superfamily NYR48_RS11535 PF01676 Metalloenzyme superfamily NYR48_RS11540 PF02899 Phage integrase, N-terminal SAM-like domain NYR48_RS11540 PF00589 Phage integrase family NYR48_RS11545 PF14004 Protein of unknown function (DUF4227) NYR48_RS11550 PF01475 Ferric uptake regulator family NYR48_RS11555 PF01944 Stage II sporulation protein M NYR48_RS11570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NYR48_RS11570 PF00390 Malic enzyme, N-terminal domain NYR48_RS11570 PF03949 Malic enzyme, NAD binding domain NYR48_RS11575 PF03553 Na+/H+ antiporter family NYR48_RS11580 PF10415 Fumarase C C-terminus NYR48_RS11580 PF00206 Lyase NYR48_RS11585 PF17763 Glutaminase/Asparaginase C-terminal domain NYR48_RS11585 PF00710 Asparaginase, N-terminal NYR48_RS11590 PF01381 Helix-turn-helix NYR48_RS11600 PF00293 NUDIX domain NYR48_RS11605 PF13072 Mother cell inhibitor of FtsZ NYR48_RS11610 PF00248 Aldo/keto reductase family NYR48_RS11620 PF12146 Serine aminopeptidase, S33 NYR48_RS11625 PF10827 Protein of unknown function (DUF2552) NYR48_RS11630 PF01521 Iron-sulphur cluster biosynthesis NYR48_RS11635 PF13673 Acetyltransferase (GNAT) domain NYR48_RS11635 PF04229 GrpB protein NYR48_RS11640 PF03992 Antibiotic biosynthesis monooxygenase NYR48_RS11645 PF00583 Acetyltransferase (GNAT) family NYR48_RS11650 PF00817 impB/mucB/samB family NYR48_RS11650 PF11799 impB/mucB/samB family C-terminal domain NYR48_RS11655 PF08863 YolD-like protein NYR48_RS11660 PF14164 YqzH-like protein NYR48_RS11665 PF01594 AI-2E family transporter NYR48_RS11680 PF00485 Phosphoribulokinase / Uridine kinase family NYR48_RS11685 PF00291 Pyridoxal-phosphate dependent enzyme NYR48_RS11690 PF00106 short chain dehydrogenase NYR48_RS11695 PF00753 Metallo-beta-lactamase superfamily NYR48_RS11700 PF03807 NADP oxidoreductase coenzyme F420-dependent NYR48_RS11700 PF14748 Pyrroline-5-carboxylate reductase dimerisation NYR48_RS11705 PF00378 Enoyl-CoA hydratase/isomerase NYR48_RS11710 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal NYR48_RS11710 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal NYR48_RS11715 PF00067 Cytochrome P450 NYR48_RS11720 PF14765 Polyketide synthase dehydratase NYR48_RS11720 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS11720 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS11720 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS11720 PF08659 KR domain NYR48_RS11720 PF08242 Methyltransferase domain NYR48_RS11720 PF00550 Phosphopantetheine attachment site NYR48_RS11725 PF00550 Phosphopantetheine attachment site NYR48_RS11725 PF08242 Methyltransferase domain NYR48_RS11725 PF08659 KR domain NYR48_RS11725 PF14765 Polyketide synthase dehydratase NYR48_RS11725 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS11725 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS11725 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS11730 PF00501 AMP-binding enzyme NYR48_RS11730 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS11730 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS11730 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS11730 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS11730 PF00668 Condensation domain NYR48_RS11730 PF00550 Phosphopantetheine attachment site NYR48_RS11730 PF14765 Polyketide synthase dehydratase NYR48_RS11730 PF08659 KR domain NYR48_RS11735 PF00501 AMP-binding enzyme NYR48_RS11735 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS11735 PF00668 Condensation domain NYR48_RS11735 PF14765 Polyketide synthase dehydratase NYR48_RS11735 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS11735 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS11735 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS11735 PF08659 KR domain NYR48_RS11735 PF00550 Phosphopantetheine attachment site NYR48_RS11740 PF00550 Phosphopantetheine attachment site NYR48_RS11740 PF08242 Methyltransferase domain NYR48_RS11740 PF14765 Polyketide synthase dehydratase NYR48_RS11740 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS11740 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS11740 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS11740 PF08659 KR domain NYR48_RS11745 PF00550 Phosphopantetheine attachment site NYR48_RS11745 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS11745 PF08659 KR domain NYR48_RS11745 PF00668 Condensation domain NYR48_RS11745 PF14765 Polyketide synthase dehydratase NYR48_RS11745 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS11745 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS11745 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS11745 PF00501 AMP-binding enzyme NYR48_RS11750 PF08242 Methyltransferase domain NYR48_RS11750 PF08659 KR domain NYR48_RS11750 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS11750 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS11750 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS11750 PF14765 Polyketide synthase dehydratase NYR48_RS11750 PF00550 Phosphopantetheine attachment site NYR48_RS11760 PF00501 AMP-binding enzyme NYR48_RS11760 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS11775 PF03060 Nitronate monooxygenase NYR48_RS11775 PF00698 Acyl transferase domain NYR48_RS11780 PF02357 Transcription termination factor nusG NYR48_RS11780 PF00467 KOW motif NYR48_RS11785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS11785 PF03466 LysR substrate binding domain NYR48_RS11795 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NYR48_RS11800 PF12146 Serine aminopeptidase, S33 NYR48_RS11805 PF00471 Ribosomal protein L33 NYR48_RS11810 PF12706 Beta-lactamase superfamily domain NYR48_RS11815 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NYR48_RS11815 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NYR48_RS11820 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NYR48_RS11820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NYR48_RS11825 PF00817 impB/mucB/samB family NYR48_RS11825 PF11799 impB/mucB/samB family C-terminal domain NYR48_RS11825 PF11798 IMS family HHH motif NYR48_RS11835 PF02096 60Kd inner membrane protein NYR48_RS11840 PF07687 Peptidase dimerisation domain NYR48_RS11840 PF01546 Peptidase family M20/M25/M40 NYR48_RS11845 PF01039 Carboxyl transferase domain NYR48_RS11860 PF03734 L,D-transpeptidase catalytic domain NYR48_RS11865 PF06081 Aromatic acid exporter family member 1 NYR48_RS11865 PF11728 Putative aromatic acid exporter C-terminal domain NYR48_RS11870 PF00005 ABC transporter NYR48_RS11875 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS11880 PF00497 Bacterial extracellular solute-binding proteins, family 3 NYR48_RS11885 PF06491 Disulphide isomerase NYR48_RS11890 PF00781 Diacylglycerol kinase catalytic domain NYR48_RS11895 PF02817 e3 binding domain NYR48_RS11895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NYR48_RS11895 PF00364 Biotin-requiring enzyme NYR48_RS11900 PF02779 Transketolase, pyrimidine binding domain NYR48_RS11900 PF02780 Transketolase, C-terminal domain NYR48_RS11905 PF00676 Dehydrogenase E1 component NYR48_RS11910 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS11910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NYR48_RS11915 PF00871 Acetokinase family NYR48_RS11920 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NYR48_RS11920 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NYR48_RS11925 PF01515 Phosphate acetyl/butaryl transferase NYR48_RS11930 PF02954 Bacterial regulatory protein, Fis family NYR48_RS11930 PF00989 PAS fold NYR48_RS11930 PF00158 Sigma-54 interaction domain NYR48_RS11935 PF11118 Protein of unknown function (DUF2627) NYR48_RS11945 PF03972 MmgE/PrpD family NYR48_RS11950 PF00285 Citrate synthase, C-terminal domain NYR48_RS11955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NYR48_RS11955 PF02770 Acyl-CoA dehydrogenase, middle domain NYR48_RS11955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NYR48_RS11960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NYR48_RS11960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NYR48_RS11965 PF02803 Thiolase, C-terminal domain NYR48_RS11965 PF00108 Thiolase, N-terminal domain NYR48_RS11970 PF03009 Glycerophosphoryl diester phosphodiesterase family NYR48_RS11975 PF01520 N-acetylmuramoyl-L-alanine amidase NYR48_RS12000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NYR48_RS12005 PF10676 Spore germination protein gerPA/gerPF NYR48_RS12010 PF10676 Spore germination protein gerPA/gerPF NYR48_RS12015 PF00842 Alanine racemase, C-terminal domain NYR48_RS12015 PF01168 Alanine racemase, N-terminal domain NYR48_RS12020 PF00072 Response regulator receiver domain NYR48_RS12020 PF08769 Sporulation initiation factor Spo0A C terminal NYR48_RS12025 PF17820 PDZ domain NYR48_RS12025 PF05580 SpoIVB peptidase S55 NYR48_RS12030 PF13476 AAA domain NYR48_RS12035 PF01316 Arginine repressor, DNA binding domain NYR48_RS12035 PF02863 Arginine repressor, C-terminal domain NYR48_RS12040 PF01728 FtsJ-like methyltransferase NYR48_RS12040 PF01479 S4 domain NYR48_RS12045 PF02779 Transketolase, pyrimidine binding domain NYR48_RS12045 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NYR48_RS12045 PF02780 Transketolase, C-terminal domain NYR48_RS12050 PF00348 Polyprenyl synthetase NYR48_RS12055 PF02609 Exonuclease VII small subunit NYR48_RS12060 PF02601 Exonuclease VII, large subunit NYR48_RS12060 PF13742 OB-fold nucleic acid binding domain NYR48_RS12065 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NYR48_RS12065 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NYR48_RS12070 PF01029 NusB family NYR48_RS12075 PF03780 Asp23 family, cell envelope-related function NYR48_RS12080 PF02785 Biotin carboxylase C-terminal domain NYR48_RS12080 PF00289 Biotin carboxylase, N-terminal domain NYR48_RS12080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NYR48_RS12085 PF00364 Biotin-requiring enzyme NYR48_RS12090 PF12685 SpoIIIAH-like protein NYR48_RS12100 PF09581 Stage III sporulation protein AF (Spore_III_AF) NYR48_RS12105 PF09546 Stage III sporulation protein AE (spore_III_AE) NYR48_RS12110 PF06686 Stage III sporulation protein AC/AD protein family NYR48_RS12115 PF06686 Stage III sporulation protein AC/AD protein family NYR48_RS12120 PF09548 Stage III sporulation protein AB (spore_III_AB) NYR48_RS12130 PF10942 Protein of unknown function (DUF2619) NYR48_RS12135 PF01132 Elongation factor P (EF-P) OB domain NYR48_RS12135 PF08207 Elongation factor P (EF-P) KOW-like domain NYR48_RS12135 PF09285 Elongation factor P, C-terminal NYR48_RS12140 PF01321 Creatinase/Prolidase N-terminal domain NYR48_RS12140 PF00557 Metallopeptidase family M24 NYR48_RS12145 PF11085 Conserved membrane protein YqhR NYR48_RS12150 PF07136 Protein of unknown function (DUF1385) NYR48_RS12160 PF01734 Patatin-like phospholipase NYR48_RS12165 PF02742 Iron dependent repressor, metal binding and dimerisation domain NYR48_RS12165 PF01325 Iron dependent repressor, N-terminal DNA binding domain NYR48_RS12170 PF03099 Biotin/lipoate A/B protein ligase family NYR48_RS12175 PF00581 Rhodanese-like domain NYR48_RS12180 PF02347 Glycine cleavage system P-protein NYR48_RS12185 PF02347 Glycine cleavage system P-protein NYR48_RS12190 PF01571 Aminomethyltransferase folate-binding domain NYR48_RS12190 PF08669 Glycine cleavage T-protein C-terminal barrel domain NYR48_RS12195 PF00176 SNF2 family N-terminal domain NYR48_RS12195 PF00271 Helicase conserved C-terminal domain NYR48_RS12200 PF11079 Bacterial protein YqhG of unknown function NYR48_RS12205 PF08671 Anti-repressor SinI NYR48_RS12210 PF08671 Anti-repressor SinI NYR48_RS12210 PF01381 Helix-turn-helix NYR48_RS12215 PF12389 Camelysin metallo-endopeptidase NYR48_RS12230 PF13028 Protein of unknown function (DUF3889) NYR48_RS12235 PF14038 YqzE-like protein NYR48_RS12240 PF14173 ComG operon protein 7 NYR48_RS12245 PF15980 Putative Competence protein ComGF NYR48_RS12255 PF07963 Prokaryotic N-terminal methylation motif NYR48_RS12260 PF07963 Prokaryotic N-terminal methylation motif NYR48_RS12265 PF00482 Type II secretion system (T2SS), protein F NYR48_RS12270 PF00437 Type II/IV secretion system protein NYR48_RS12275 PF01544 CorA-like Mg2+ transporter protein NYR48_RS12280 PF01595 Cyclin M transmembrane N-terminal domain NYR48_RS12280 PF00571 CBS domain NYR48_RS12280 PF03471 Transporter associated domain NYR48_RS12285 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain NYR48_RS12285 PF01740 STAS domain NYR48_RS12295 PF03960 ArsC family NYR48_RS12300 PF11117 Protein of unknown function (DUF2626) NYR48_RS12305 PF00753 Metallo-beta-lactamase superfamily NYR48_RS12310 PF10958 Protein of unknown function (DUF2759) NYR48_RS12315 PF01910 Thiamine-binding protein NYR48_RS12325 PF00246 Zinc carboxypeptidase NYR48_RS12330 PF00480 ROK family NYR48_RS12335 PF06014 Bacterial protein of unknown function (DUF910) NYR48_RS12340 PF03553 Na+/H+ antiporter family NYR48_RS12350 PF01812 5-formyltetrahydrofolate cyclo-ligase family NYR48_RS12355 PF00471 Ribosomal protein L33 NYR48_RS12370 PF00005 ABC transporter NYR48_RS12375 PF00005 ABC transporter NYR48_RS12380 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS12385 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS12390 PF12849 PBP superfamily domain NYR48_RS12395 PF03717 Penicillin-binding Protein dimerisation domain NYR48_RS12395 PF00905 Penicillin binding protein transpeptidase domain NYR48_RS12400 PF07690 Major Facilitator Superfamily NYR48_RS12405 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NYR48_RS12405 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NYR48_RS12410 PF04306 Protein of unknown function (DUF456) NYR48_RS12415 PF06691 Protein of unknown function (DUF1189) NYR48_RS12425 PF04551 GcpE protein NYR48_RS12440 PF01475 Ferric uptake regulator family NYR48_RS12445 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR48_RS12445 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NYR48_RS12450 PF11116 Protein of unknown function (DUF2624) NYR48_RS12455 PF01261 Xylose isomerase-like TIM barrel NYR48_RS12460 PF00270 DEAD/DEAH box helicase NYR48_RS12460 PF00271 Helicase conserved C-terminal domain NYR48_RS12465 PF14181 YqfQ-like protein NYR48_RS12470 PF02401 LytB protein NYR48_RS12475 PF01784 NIF3 (NGG1p interacting factor 3) NYR48_RS12480 PF04816 tRNA (adenine(22)-N(1))-methyltransferase NYR48_RS12485 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NYR48_RS12490 PF03979 Sigma-70 factor, region 1.1 NYR48_RS12490 PF00140 Sigma-70 factor, region 1.2 NYR48_RS12490 PF04542 Sigma-70 region 2 NYR48_RS12490 PF04545 Sigma-70, region 4 NYR48_RS12490 PF04539 Sigma-70 region 3 NYR48_RS12495 PF10410 DnaB-helicase binding domain of primase NYR48_RS12495 PF08275 DNA primase catalytic core, N-terminal domain NYR48_RS12495 PF01807 CHC2 zinc finger NYR48_RS12500 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NYR48_RS12505 PF03618 Kinase/pyrophosphorylase NYR48_RS12510 PF00571 CBS domain NYR48_RS12510 PF08279 HTH domain NYR48_RS12515 PF02092 Glycyl-tRNA synthetase beta subunit NYR48_RS12520 PF02091 Glycyl-tRNA synthetase alpha subunit NYR48_RS12525 PF02565 Recombination protein O C terminal NYR48_RS12525 PF11967 Recombination protein O N terminal NYR48_RS12530 PF14006 YqzL-like protein NYR48_RS12535 PF01926 50S ribosome-binding GTPase NYR48_RS12535 PF07650 KH domain NYR48_RS12540 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NYR48_RS12545 PF01219 Prokaryotic diacylglycerol kinase NYR48_RS12550 PF02130 Uncharacterized protein family UPF0054 NYR48_RS12555 PF07698 7TM receptor with intracellular HD hydrolase NYR48_RS12555 PF07697 7TM-HD extracellular NYR48_RS12555 PF01966 HD domain NYR48_RS12560 PF02562 PhoH-like protein NYR48_RS12565 PF06898 Putative stage IV sporulation protein YqfD NYR48_RS12570 PF07873 YabP family NYR48_RS12580 PF12127 SigmaW regulon antibacterial NYR48_RS12585 PF01972 Serine dehydrogenase proteinase NYR48_RS12585 PF01957 NfeD-like C-terminal, partner-binding NYR48_RS12590 PF09424 Yqey-like protein NYR48_RS12595 PF01165 Ribosomal protein S21 NYR48_RS12600 PF02690 Na+/Pi-cotransporter NYR48_RS12605 PF04055 Radical SAM superfamily NYR48_RS12605 PF01938 TRAM domain NYR48_RS12605 PF00919 Uncharacterized protein family UPF0004 NYR48_RS12610 PF04452 RNA methyltransferase NYR48_RS12620 PF00226 DnaJ domain NYR48_RS12620 PF01556 DnaJ C terminal domain NYR48_RS12620 PF00684 DnaJ central domain NYR48_RS12625 PF00012 Hsp70 protein NYR48_RS12630 PF01025 GrpE NYR48_RS12635 PF01628 HrcA protein C terminal domain NYR48_RS12640 PF06969 HemN C-terminal domain NYR48_RS12640 PF04055 Radical SAM superfamily NYR48_RS12645 PF00679 Elongation factor G C-terminus NYR48_RS12645 PF00009 Elongation factor Tu GTP binding domain NYR48_RS12645 PF03144 Elongation factor Tu domain 2 NYR48_RS12645 PF06421 GTP-binding protein LepA C-terminus NYR48_RS12650 PF12438 Protein of unknown function (DUF3679) NYR48_RS12655 PF07454 Stage II sporulation protein P (SpoIIP) NYR48_RS12660 PF03418 Germination protease NYR48_RS12665 PF01649 Ribosomal protein S20 NYR48_RS12680 PF14141 YqzM-like protein NYR48_RS12685 PF13567 Domain of unknown function (DUF4131) NYR48_RS12685 PF03772 Competence protein NYR48_RS12685 PF00753 Metallo-beta-lactamase superfamily NYR48_RS12690 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NYR48_RS12695 PF10531 SLBB domain NYR48_RS12700 PF03807 NADP oxidoreductase coenzyme F420-dependent NYR48_RS12700 PF14748 Pyrroline-5-carboxylate reductase dimerisation NYR48_RS12705 PF13649 Methyltransferase domain NYR48_RS12715 PF01966 HD domain NYR48_RS12720 PF01467 Cytidylyltransferase-like NYR48_RS12725 PF01985 CRS1 / YhbY (CRM) domain NYR48_RS12730 PF01488 Shikimate / quinate 5-dehydrogenase NYR48_RS12730 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NYR48_RS12730 PF08501 Shikimate dehydrogenase substrate binding domain NYR48_RS12735 PF01926 50S ribosome-binding GTPase NYR48_RS12745 PF08970 Sporulation inhibitor A NYR48_RS12755 PF00657 GDSL-like Lipase/Acylhydrolase NYR48_RS12760 PF01522 Polysaccharide deacetylase NYR48_RS12765 PF09335 SNARE associated Golgi protein NYR48_RS12780 PF04542 Sigma-70 region 2 NYR48_RS12780 PF04545 Sigma-70, region 4 NYR48_RS12815 PF07690 Major Facilitator Superfamily NYR48_RS12820 PF00583 Acetyltransferase (GNAT) family NYR48_RS12825 PF05163 DinB family NYR48_RS12845 PF01380 SIS domain NYR48_RS12845 PF01418 Helix-turn-helix domain, rpiR family NYR48_RS12850 PF01238 Phosphomannose isomerase type I NYR48_RS12855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NYR48_RS12855 PF02378 Phosphotransferase system, EIIC NYR48_RS12855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NYR48_RS12860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NYR48_RS12860 PF00874 PRD domain NYR48_RS12860 PF05043 Mga helix-turn-helix domain NYR48_RS12860 PF08279 HTH domain NYR48_RS12870 PF04073 Aminoacyl-tRNA editing domain NYR48_RS12875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS12875 PF03466 LysR substrate binding domain NYR48_RS12880 PF07690 Major Facilitator Superfamily NYR48_RS12885 PF00667 FAD binding domain NYR48_RS12885 PF00258 Flavodoxin NYR48_RS12885 PF00175 Oxidoreductase NAD-binding domain NYR48_RS12885 PF00067 Cytochrome P450 NYR48_RS12890 PF16295 Tetracyclin repressor-like, C-terminal domain NYR48_RS12890 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS12895 PF08241 Methyltransferase domain NYR48_RS12905 PF09501 Probable sporulation protein (Bac_small_yrzI) NYR48_RS12910 PF01226 Formate/nitrite transporter NYR48_RS12915 PF10057 Uncharacterized conserved protein (DUF2294) NYR48_RS12920 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NYR48_RS12920 PF01568 Molydopterin dinucleotide binding domain NYR48_RS12920 PF00037 4Fe-4S binding domain NYR48_RS12920 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NYR48_RS12920 PF00384 Molybdopterin oxidoreductase NYR48_RS12925 PF07849 Protein of unknown function (DUF1641) NYR48_RS12930 PF14143 YrhC-like protein NYR48_RS12935 PF01053 Cys/Met metabolism PLP-dependent enzyme NYR48_RS12940 PF00291 Pyridoxal-phosphate dependent enzyme NYR48_RS12945 PF01048 Phosphorylase superfamily NYR48_RS12950 PF13649 Methyltransferase domain NYR48_RS12955 PF10750 Protein of unknown function (DUF2536) NYR48_RS12960 PF07423 Domain of unknown function (DUF1510) NYR48_RS12965 PF03717 Penicillin-binding Protein dimerisation domain NYR48_RS12965 PF00905 Penicillin binding protein transpeptidase domain NYR48_RS12970 PF01272 Transcription elongation factor, GreA/GreB, C-term NYR48_RS12970 PF03449 Transcription elongation factor, N-terminal NYR48_RS12975 PF00485 Phosphoribulokinase / Uridine kinase family NYR48_RS12980 PF01136 Peptidase family U32 NYR48_RS12980 PF16325 Peptidase family U32 C-terminal domain NYR48_RS12985 PF01136 Peptidase family U32 NYR48_RS12990 PF01596 O-methyltransferase NYR48_RS12995 PF02618 YceG-like family NYR48_RS13000 PF06949 Protein of unknown function (DUF1292) NYR48_RS13005 PF03652 Holliday junction resolvase NYR48_RS13010 PF06135 IreB regulatory phosphoprotein NYR48_RS13015 PF02272 DHHA1 domain NYR48_RS13015 PF01411 tRNA synthetases class II (A) NYR48_RS13015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NYR48_RS13020 PF01594 AI-2E family transporter NYR48_RS13025 PF00005 ABC transporter NYR48_RS13030 PF00497 Bacterial extracellular solute-binding proteins, family 3 NYR48_RS13035 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS13040 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS13045 PF13056 Protein of unknown function (DUF3918) NYR48_RS13055 PF05239 PRC-barrel domain NYR48_RS13060 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NYR48_RS13060 PF14490 Helix-hairpin-helix containing domain NYR48_RS13060 PF13538 UvrD-like helicase C-terminal domain NYR48_RS13065 PF07719 Tetratricopeptide repeat NYR48_RS13065 PF13181 Tetratricopeptide repeat NYR48_RS13075 PF00266 Aminotransferase class-V NYR48_RS13080 PF02082 Transcriptional regulator NYR48_RS13085 PF16193 AAA C-terminal domain NYR48_RS13085 PF12002 MgsA AAA+ ATPase C terminal NYR48_RS13085 PF05496 Holliday junction DNA helicase RuvB P-loop domain NYR48_RS13090 PF00899 ThiF family NYR48_RS13100 PF01336 OB-fold nucleic acid binding domain NYR48_RS13100 PF02938 GAD domain NYR48_RS13100 PF00152 tRNA synthetases class II (D, K and N) NYR48_RS13105 PF13393 Histidyl-tRNA synthetase NYR48_RS13105 PF03129 Anticodon binding domain NYR48_RS13110 PF17449 Uncharacterized YrzK-like NYR48_RS13115 PF01520 N-acetylmuramoyl-L-alanine amidase NYR48_RS13115 PF08239 Bacterial SH3 domain NYR48_RS13120 PF02580 D-Tyr-tRNA(Tyr) deacylase NYR48_RS13125 PF13291 ACT domain NYR48_RS13125 PF04607 Region found in RelA / SpoT proteins NYR48_RS13125 PF02824 TGS domain NYR48_RS13130 PF00156 Phosphoribosyl transferase domain NYR48_RS13135 PF10141 Single-strand DNA-specific exonuclease, C terminal domain NYR48_RS13135 PF02272 DHHA1 domain NYR48_RS13135 PF17768 RecJ OB domain NYR48_RS13135 PF01368 DHH family NYR48_RS13140 PF06305 Lipopolysaccharide assembly protein A domain NYR48_RS13145 PF02080 TrkA-C domain NYR48_RS13150 PF07549 SecD/SecF GG Motif NYR48_RS13150 PF02355 Protein export membrane protein NYR48_RS13155 PF13797 Post-transcriptional regulator NYR48_RS13160 PF01943 Polysaccharide biosynthesis protein NYR48_RS13160 PF14667 Polysaccharide biosynthesis C-terminal domain NYR48_RS13165 PF04239 Protein of unknown function (DUF421) NYR48_RS13170 PF12670 Protein of unknown function (DUF3792) NYR48_RS13175 PF02699 Preprotein translocase subunit NYR48_RS13180 PF01702 Queuine tRNA-ribosyltransferase NYR48_RS13185 PF02547 Queuosine biosynthesis protein NYR48_RS13190 PF11146 Protein of unknown function (DUF2905) NYR48_RS13195 PF17864 RuvB AAA lid domain NYR48_RS13195 PF05491 RuvB C-terminal winged helix domain NYR48_RS13195 PF05496 Holliday junction DNA helicase RuvB P-loop domain NYR48_RS13200 PF07499 RuvA, C-terminal domain NYR48_RS13200 PF01330 RuvA N terminal domain NYR48_RS13205 PF08955 BofC C-terminal domain NYR48_RS13205 PF08977 Bypass of Forespore C, N terminal NYR48_RS13210 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NYR48_RS13215 PF01476 LysM domain NYR48_RS13220 PF02445 Quinolinate synthetase A protein NYR48_RS13225 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NYR48_RS13225 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NYR48_RS13230 PF00890 FAD binding domain NYR48_RS13230 PF02910 Fumarate reductase flavoprotein C-term NYR48_RS13235 PF00266 Aminotransferase class-V NYR48_RS13240 PF02829 3H domain NYR48_RS13240 PF08279 HTH domain NYR48_RS13245 PF01842 ACT domain NYR48_RS13245 PF00800 Prephenate dehydratase NYR48_RS13250 PF01842 ACT domain NYR48_RS13255 PF01018 GTP1/OBG NYR48_RS13255 PF09269 Domain of unknown function (DUF1967) NYR48_RS13255 PF01926 50S ribosome-binding GTPase NYR48_RS13260 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NYR48_RS13260 PF14682 Sporulation initiation phospho-transferase B, C-terminal NYR48_RS13265 PF01016 Ribosomal L27 protein NYR48_RS13270 PF04327 Cysteine protease Prp NYR48_RS13275 PF00829 Ribosomal prokaryotic L21 protein NYR48_RS13280 PF02163 Peptidase family M50 NYR48_RS13285 PF01551 Peptidase family M23 NYR48_RS13290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NYR48_RS13295 PF03775 Septum formation inhibitor MinC, C-terminal domain NYR48_RS13300 PF04093 rod shape-determining protein MreD NYR48_RS13305 PF04085 rod shape-determining protein MreC NYR48_RS13315 PF04002 RadC-like JAB domain NYR48_RS13320 PF02545 Maf-like protein NYR48_RS13325 PF05036 Sporulation related domain NYR48_RS13330 PF06750 Bacterial Peptidase A24 N-terminal domain NYR48_RS13330 PF01478 Type IV leader peptidase family NYR48_RS13335 PF08245 Mur ligase middle domain NYR48_RS13335 PF02875 Mur ligase family, glutamate ligase domain NYR48_RS13340 PF08264 Anticodon-binding domain of tRNA NYR48_RS13340 PF00133 tRNA synthetases class I (I, L, M and V) NYR48_RS13340 PF10458 Valyl tRNA synthetase tRNA binding arm NYR48_RS13355 PF01476 LysM domain NYR48_RS13360 PF00202 Aminotransferase class-III NYR48_RS13365 PF00490 Delta-aminolevulinic acid dehydratase NYR48_RS13370 PF02602 Uroporphyrinogen-III synthase HemD NYR48_RS13375 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NYR48_RS13375 PF03900 Porphobilinogen deaminase, C-terminal domain NYR48_RS13380 PF01578 Cytochrome C assembly protein NYR48_RS13385 PF01488 Shikimate / quinate 5-dehydrogenase NYR48_RS13385 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NYR48_RS13385 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NYR48_RS13395 PF01926 50S ribosome-binding GTPase NYR48_RS13400 PF05362 Lon protease (S16) C-terminal proteolytic domain NYR48_RS13400 PF02190 ATP-dependent protease La (LON) substrate-binding domain NYR48_RS13400 PF00004 ATPase family associated with various cellular activities (AAA) NYR48_RS13405 PF00004 ATPase family associated with various cellular activities (AAA) NYR48_RS13405 PF05362 Lon protease (S16) C-terminal proteolytic domain NYR48_RS13410 PF06689 ClpX C4-type zinc finger NYR48_RS13410 PF10431 C-terminal, D2-small domain, of ClpB protein NYR48_RS13410 PF07724 AAA domain (Cdc48 subfamily) NYR48_RS13415 PF05697 Bacterial trigger factor protein (TF) NYR48_RS13415 PF05698 Bacterial trigger factor protein (TF) C-terminus NYR48_RS13415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NYR48_RS13425 PF00694 Aconitase C-terminal domain NYR48_RS13430 PF00330 Aconitase family (aconitate hydratase) NYR48_RS13435 PF00180 Isocitrate/isopropylmalate dehydrogenase NYR48_RS13440 PF00682 HMGL-like NYR48_RS13440 PF08502 LeuA allosteric (dimerisation) domain NYR48_RS13445 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NYR48_RS13445 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NYR48_RS13450 PF01842 ACT domain NYR48_RS13450 PF10369 Small subunit of acetolactate synthase NYR48_RS13455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NYR48_RS13455 PF00205 Thiamine pyrophosphate enzyme, central domain NYR48_RS13455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NYR48_RS13480 PF12850 Calcineurin-like phosphoesterase superfamily domain NYR48_RS13485 PF01725 Ham1 family NYR48_RS13490 PF01138 3' exoribonuclease family, domain 1 NYR48_RS13490 PF03725 3' exoribonuclease family, domain 2 NYR48_RS13495 PF10646 Sporulation and spore germination NYR48_RS13500 PF01177 Asp/Glu/Hydantoin racemase NYR48_RS13505 PF01047 MarR family NYR48_RS13510 PF00196 Bacterial regulatory proteins, luxR family NYR48_RS13515 PF03061 Thioesterase superfamily NYR48_RS13520 PF13183 4Fe-4S dicluster domain NYR48_RS13520 PF13085 2Fe-2S iron-sulfur cluster binding domain NYR48_RS13525 PF00890 FAD binding domain NYR48_RS13525 PF02910 Fumarate reductase flavoprotein C-term NYR48_RS13530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NYR48_RS13535 PF10702 Protein of unknown function (DUF2507) NYR48_RS13540 PF01842 ACT domain NYR48_RS13540 PF00696 Amino acid kinase family NYR48_RS13540 PF13840 ACT domain NYR48_RS13545 PF08459 UvrC Helix-hairpin-helix N-terminal NYR48_RS13545 PF01541 GIY-YIG catalytic domain NYR48_RS13545 PF02151 UvrB/uvrC motif NYR48_RS13550 PF00085 Thioredoxin NYR48_RS13555 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NYR48_RS13560 PF00766 Electron transfer flavoprotein FAD-binding domain NYR48_RS13560 PF01012 Electron transfer flavoprotein domain NYR48_RS13565 PF01012 Electron transfer flavoprotein domain NYR48_RS13570 PF00378 Enoyl-CoA hydratase/isomerase NYR48_RS13575 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS13575 PF08359 YsiA-like protein, C-terminal region NYR48_RS13580 PF00501 AMP-binding enzyme NYR48_RS13580 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS13585 PF10924 Protein of unknown function (DUF2711) NYR48_RS13590 PF03994 Domain of Unknown Function (DUF350) NYR48_RS13595 PF00488 MutS domain V NYR48_RS13595 PF01713 Smr domain NYR48_RS13600 PF02811 PHP domain NYR48_RS13600 PF14716 Helix-hairpin-helix domain NYR48_RS13600 PF14791 DNA polymerase beta thumb NYR48_RS13605 PF02674 Colicin V production protein NYR48_RS13610 PF05164 Cell division protein ZapA NYR48_RS13615 PF11858 Domain of unknown function (DUF3378) NYR48_RS13615 PF01351 Ribonuclease HII NYR48_RS13620 PF03483 B3/4 domain NYR48_RS13620 PF03484 tRNA synthetase B5 domain NYR48_RS13620 PF03147 Ferredoxin-fold anticodon binding domain NYR48_RS13620 PF01588 Putative tRNA binding domain NYR48_RS13620 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NYR48_RS13625 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NYR48_RS13625 PF01409 tRNA synthetases class II core domain (F) NYR48_RS13630 PF08032 RNA 2'-O ribose methyltransferase substrate binding NYR48_RS13630 PF00588 SpoU rRNA Methylase family NYR48_RS13635 PF14098 Small, acid-soluble spore protein I NYR48_RS13640 PF05651 Putative sugar diacid recognition NYR48_RS13640 PF17853 GGDEF-like domain NYR48_RS13640 PF13556 PucR C-terminal helix-turn-helix domain NYR48_RS13645 PF02913 FAD linked oxidases, C-terminal domain NYR48_RS13645 PF01565 FAD binding domain NYR48_RS13650 PF02754 Cysteine-rich domain NYR48_RS13650 PF13183 4Fe-4S dicluster domain NYR48_RS13655 PF02554 Carbon starvation protein CstA NYR48_RS13655 PF13722 5TM C-terminal transporter carbon starvation CstA NYR48_RS13660 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NYR48_RS13665 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS13670 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS13675 PF01547 Bacterial extracellular solute-binding protein NYR48_RS13680 PF13685 Iron-containing alcohol dehydrogenase NYR48_RS13685 PF13344 Haloacid dehalogenase-like hydrolase NYR48_RS13690 PF00596 Class II Aldolase and Adducin N-terminal domain NYR48_RS13695 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NYR48_RS13695 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NYR48_RS13700 PF02610 L-arabinose isomerase NYR48_RS13700 PF11762 L-arabinose isomerase C-terminal domain NYR48_RS13705 PF04616 Glycosyl hydrolases family 43 NYR48_RS13710 PF05343 M42 glutamyl aminopeptidase NYR48_RS13720 PF06961 Protein of unknown function (DUF1294) NYR48_RS13725 PF00453 Ribosomal protein L20 NYR48_RS13730 PF01632 Ribosomal protein L35 NYR48_RS13735 PF00707 Translation initiation factor IF-3, C-terminal domain NYR48_RS13735 PF05198 Translation initiation factor IF-3, N-terminal domain NYR48_RS13740 PF04172 LrgB-like family NYR48_RS13745 PF03788 LrgA family NYR48_RS13750 PF00072 Response regulator receiver domain NYR48_RS13750 PF04397 LytTr DNA-binding domain NYR48_RS13755 PF06580 Histidine kinase NYR48_RS13755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS13755 PF07694 5TMR of 5TMR-LYT NYR48_RS13760 PF13419 Haloacid dehalogenase-like hydrolase NYR48_RS13765 PF03129 Anticodon binding domain NYR48_RS13765 PF02824 TGS domain NYR48_RS13765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NYR48_RS13765 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NYR48_RS13770 PF08812 YtxC-like family NYR48_RS13775 PF09335 SNARE associated Golgi protein NYR48_RS13780 PF07319 Primosomal protein DnaI N-terminus NYR48_RS13780 PF01695 IstB-like ATP binding protein NYR48_RS13785 PF07261 Replication initiation and membrane attachment NYR48_RS13790 PF03477 ATP cone domain NYR48_RS13795 PF02675 S-adenosylmethionine decarboxylase NYR48_RS13800 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NYR48_RS13800 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NYR48_RS13805 PF01638 HxlR-like helix-turn-helix NYR48_RS13810 PF07690 Major Facilitator Superfamily NYR48_RS13815 PF00248 Aldo/keto reductase family NYR48_RS13820 PF01121 Dephospho-CoA kinase NYR48_RS13825 PF02659 Putative manganese efflux pump NYR48_RS13830 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NYR48_RS13830 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NYR48_RS13830 PF06827 Zinc finger found in FPG and IleRS NYR48_RS13835 PF00476 DNA polymerase family A NYR48_RS13835 PF01367 5'-3' exonuclease, C-terminal SAM fold NYR48_RS13835 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NYR48_RS13840 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS13840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS13840 PF16736 Single Cache-like NYR48_RS13840 PF00989 PAS fold NYR48_RS13845 PF00072 Response regulator receiver domain NYR48_RS13845 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS13850 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NYR48_RS13850 PF00056 lactate/malate dehydrogenase, NAD binding domain NYR48_RS13855 PF00180 Isocitrate/isopropylmalate dehydrogenase NYR48_RS13860 PF00285 Citrate synthase, C-terminal domain NYR48_RS13875 PF11208 Protein of unknown function (DUF2992) NYR48_RS13880 PF04284 Protein of unknown function (DUF441) NYR48_RS13885 PF01594 AI-2E family transporter NYR48_RS13890 PF04186 FxsA cytoplasmic membrane protein NYR48_RS13895 PF00391 PEP-utilising enzyme, mobile domain NYR48_RS13895 PF00224 Pyruvate kinase, barrel domain NYR48_RS13895 PF02887 Pyruvate kinase, alpha/beta domain NYR48_RS13900 PF00365 Phosphofructokinase NYR48_RS13905 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NYR48_RS13910 PF01039 Carboxyl transferase domain NYR48_RS13910 PF17848 Acetyl-coA carboxylase zinc finger domain NYR48_RS13915 PF00390 Malic enzyme, N-terminal domain NYR48_RS13915 PF03949 Malic enzyme, NAD binding domain NYR48_RS13920 PF07733 Bacterial DNA polymerase III alpha NTPase domain NYR48_RS13920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NYR48_RS13920 PF02811 PHP domain NYR48_RS13920 PF14579 Helix-hairpin-helix motif NYR48_RS13920 PF01336 OB-fold nucleic acid binding domain NYR48_RS13925 PF14034 Sporulation protein YtrH NYR48_RS13940 PF01368 DHH family NYR48_RS13940 PF02272 DHHA1 domain NYR48_RS13945 PF14007 YtpI-like protein NYR48_RS13950 PF03061 Thioesterase superfamily NYR48_RS13950 PF00571 CBS domain NYR48_RS13950 PF07085 DRTGG domain NYR48_RS13950 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS13970 PF14698 Argininosuccinate lyase C-terminal NYR48_RS13970 PF00206 Lyase NYR48_RS13975 PF00764 Arginosuccinate synthase NYR48_RS13980 PF00994 Probable molybdopterin binding domain NYR48_RS13985 PF00871 Acetokinase family NYR48_RS13990 PF02384 N-6 DNA Methylase NYR48_RS13995 PF08534 Redoxin NYR48_RS14000 PF09579 Sporulation protein YtfJ (Spore_YtfJ) NYR48_RS14005 PF11167 Protein of unknown function (DUF2953) NYR48_RS14010 PF06271 RDD family NYR48_RS14015 PF01343 Peptidase family S49 NYR48_RS14020 PF01513 ATP-NAD kinase NYR48_RS14025 PF07969 Amidohydrolase family NYR48_RS14030 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS14030 PF00501 AMP-binding enzyme NYR48_RS14035 PF00269 Small, acid-soluble spore proteins, alpha/beta type NYR48_RS14040 PF02926 THUMP domain NYR48_RS14040 PF02568 Thiamine biosynthesis protein (ThiI) NYR48_RS14045 PF00266 Aminotransferase class-V NYR48_RS14050 PF05525 Branched-chain amino acid transport protein NYR48_RS14055 PF06160 Septation ring formation regulator, EzrA NYR48_RS14060 PF02811 PHP domain NYR48_RS14065 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS14070 PF13185 GAF domain NYR48_RS14075 PF00990 Diguanylate cyclase, GGDEF domain NYR48_RS14080 PF00163 Ribosomal protein S4/S9 N-terminal domain NYR48_RS14080 PF01479 S4 domain NYR48_RS14085 PF00171 Aldehyde dehydrogenase family NYR48_RS14110 PF00970 Oxidoreductase FAD-binding domain NYR48_RS14110 PF00042 Globin NYR48_RS14110 PF00175 Oxidoreductase NAD-binding domain NYR48_RS14120 PF01965 DJ-1/PfpI family NYR48_RS14140 PF01545 Cation efflux family NYR48_RS14140 PF16916 Dimerisation domain of Zinc Transporter NYR48_RS14145 PF11495 Archaeal transcriptional regulator TrmB NYR48_RS14145 PF01978 Sugar-specific transcriptional regulator TrmB NYR48_RS14165 PF00579 tRNA synthetases class I (W and Y) NYR48_RS14165 PF01479 S4 domain NYR48_RS14170 PF00501 AMP-binding enzyme NYR48_RS14170 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS14175 PF00583 Acetyltransferase (GNAT) family NYR48_RS14180 PF00571 CBS domain NYR48_RS14185 PF00850 Histone deacetylase domain NYR48_RS14190 PF13677 Membrane MotB of proton-channel complex MotA/MotB NYR48_RS14190 PF00691 OmpA family NYR48_RS14195 PF01618 MotA/TolQ/ExbB proton channel family NYR48_RS14200 PF00356 Bacterial regulatory proteins, lacI family NYR48_RS14205 PF01817 Chorismate mutase type II NYR48_RS14205 PF00793 DAHP synthetase I family NYR48_RS14210 PF11009 Protein of unknown function (DUF2847) NYR48_RS14215 PF12732 YtxH-like protein NYR48_RS14220 PF06103 Bacterial protein of unknown function (DUF948) NYR48_RS14225 PF01225 Mur ligase family, catalytic domain NYR48_RS14225 PF02875 Mur ligase family, glutamate ligase domain NYR48_RS14225 PF08245 Mur ligase middle domain NYR48_RS14230 PF01580 FtsK/SpoIIIE family NYR48_RS14230 PF09397 Ftsk gamma domain NYR48_RS14230 PF17854 FtsK alpha domain NYR48_RS14235 PF01588 Putative tRNA binding domain NYR48_RS14235 PF14794 Domain of unknown function (DUF4479) NYR48_RS14240 PF07285 Protein of unknown function (DUF1444) NYR48_RS14245 PF00085 Thioredoxin NYR48_RS14250 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ NYR48_RS14255 PF05343 M42 glutamyl aminopeptidase NYR48_RS14260 PF03413 Peptidase propeptide and YPEB domain NYR48_RS14265 PF00390 Malic enzyme, N-terminal domain NYR48_RS14265 PF03949 Malic enzyme, NAD binding domain NYR48_RS14270 PF00753 Metallo-beta-lactamase superfamily NYR48_RS14275 PF02390 Putative methyltransferase NYR48_RS14280 PF14165 YtzH-like protein NYR48_RS14285 PF01636 Phosphotransferase enzyme family NYR48_RS14290 PF00781 Diacylglycerol kinase catalytic domain NYR48_RS14305 PF00291 Pyridoxal-phosphate dependent enzyme NYR48_RS14310 PF01546 Peptidase family M20/M25/M40 NYR48_RS14315 PF00860 Permease family NYR48_RS14320 PF05975 Bacterial ABC transporter protein EcsB NYR48_RS14325 PF00005 ABC transporter NYR48_RS14330 PF08220 DeoR-like helix-turn-helix domain NYR48_RS14335 PF01479 S4 domain NYR48_RS14335 PF00849 RNA pseudouridylate synthase NYR48_RS14340 PF01943 Polysaccharide biosynthesis protein NYR48_RS14340 PF14667 Polysaccharide biosynthesis C-terminal domain NYR48_RS14350 PF02028 BCCT, betaine/carnitine/choline family transporter NYR48_RS14355 PF10957 Sporulation protein Cse60 NYR48_RS14360 PF00356 Bacterial regulatory proteins, lacI family NYR48_RS14365 PF01547 Bacterial extracellular solute-binding protein NYR48_RS14370 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS14375 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS14380 PF02056 Family 4 glycosyl hydrolase NYR48_RS14380 PF11975 Family 4 glycosyl hydrolase C-terminal domain NYR48_RS14390 PF00581 Rhodanese-like domain NYR48_RS14395 PF08264 Anticodon-binding domain of tRNA NYR48_RS14395 PF00133 tRNA synthetases class I (I, L, M and V) NYR48_RS14395 PF13603 Leucyl-tRNA synthetase, Domain 2 NYR48_RS14395 PF09334 tRNA synthetases class I (M) NYR48_RS14400 PF14074 Protein of unknown function (DUF4257) NYR48_RS14405 PF13426 PAS domain NYR48_RS14405 PF01740 STAS domain NYR48_RS14415 PF07690 Major Facilitator Superfamily NYR48_RS14420 PF09529 Integral membrane protein (intg_mem_TP0381) NYR48_RS14425 PF02687 FtsX-like permease family NYR48_RS14430 PF00005 ABC transporter NYR48_RS14435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS14440 PF00072 Response regulator receiver domain NYR48_RS14440 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS14445 PF02687 FtsX-like permease family NYR48_RS14445 PF12704 MacB-like periplasmic core domain NYR48_RS14450 PF00005 ABC transporter NYR48_RS14470 PF00005 ABC transporter NYR48_RS14475 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS14485 PF10732 Protein of unknown function (DUF2524) NYR48_RS14490 PF00550 Phosphopantetheine attachment site NYR48_RS14490 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS14490 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS14490 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS14490 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS14490 PF00501 AMP-binding enzyme NYR48_RS14490 PF00202 Aminotransferase class-III NYR48_RS14490 PF00668 Condensation domain NYR48_RS14495 PF01022 Bacterial regulatory protein, arsR family NYR48_RS14500 PF08990 Erythronolide synthase docking NYR48_RS14500 PF16197 Ketoacyl-synthetase C-terminal extension NYR48_RS14500 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR48_RS14500 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR48_RS14500 PF00550 Phosphopantetheine attachment site NYR48_RS14500 PF00975 Thioesterase domain NYR48_RS14500 PF00698 Acyl transferase domain NYR48_RS14505 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS14505 PF00668 Condensation domain NYR48_RS14505 PF00550 Phosphopantetheine attachment site NYR48_RS14505 PF00501 AMP-binding enzyme NYR48_RS14520 PF07690 Major Facilitator Superfamily NYR48_RS14525 PF16199 Radical_SAM C-terminal domain NYR48_RS14525 PF04055 Radical SAM superfamily NYR48_RS14530 PF06962 Putative rRNA methylase NYR48_RS14540 PF03009 Glycerophosphoryl diester phosphodiesterase family NYR48_RS14545 PF10776 Protein of unknown function (DUF2600) NYR48_RS14550 PF12146 Serine aminopeptidase, S33 NYR48_RS14555 PF00132 Bacterial transferase hexapeptide (six repeats) NYR48_RS14560 PF00324 Amino acid permease NYR48_RS14565 PF13537 Glutamine amidotransferase domain NYR48_RS14565 PF00733 Asparagine synthase NYR48_RS14570 PF02773 S-adenosylmethionine synthetase, C-terminal domain NYR48_RS14570 PF02772 S-adenosylmethionine synthetase, central domain NYR48_RS14570 PF00438 S-adenosylmethionine synthetase, N-terminal domain NYR48_RS14575 PF01293 Phosphoenolpyruvate carboxykinase NYR48_RS14580 PF10763 Protein of unknown function (DUF2584) NYR48_RS14585 PF00326 Prolyl oligopeptidase family NYR48_RS14595 PF00005 ABC transporter NYR48_RS14600 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS14605 PF00293 NUDIX domain NYR48_RS14610 PF05105 Bacteriophage holin family NYR48_RS14615 PF00210 Ferritin-like domain NYR48_RS14625 PF13115 YtkA-like NYR48_RS14630 PF02664 S-Ribosylhomocysteinase (LuxS) NYR48_RS14635 PF01809 Putative membrane protein insertion efficiency factor NYR48_RS14640 PF00484 Carbonic anhydrase NYR48_RS14645 PF01197 Ribosomal protein L31 NYR48_RS14650 PF01654 Cytochrome bd terminal oxidase subunit I NYR48_RS14655 PF02322 Cytochrome bd terminal oxidase subunit II NYR48_RS14660 PF07561 Domain of Unknown Function (DUF1540) NYR48_RS14665 PF00950 ABC 3 transport family NYR48_RS14670 PF13378 Enolase C-terminal domain-like NYR48_RS14670 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NYR48_RS14675 PF00501 AMP-binding enzyme NYR48_RS14675 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS14680 PF00378 Enoyl-CoA hydratase/isomerase NYR48_RS14685 PF00561 alpha/beta hydrolase fold NYR48_RS14690 PF16582 Middle domain of thiamine pyrophosphate NYR48_RS14690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NYR48_RS14690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NYR48_RS14695 PF00425 chorismate binding enzyme NYR48_RS14700 PF01258 Prokaryotic dksA/traR C4-type zinc finger NYR48_RS14705 PF03073 TspO/MBR family NYR48_RS14830 PF09515 Thiamine transporter protein (Thia_YuaJ) NYR48_RS14835 PF01145 SPFH domain / Band 7 family NYR48_RS14835 PF15975 Flotillin NYR48_RS14845 PF12867 DinB superfamily NYR48_RS14855 PF00465 Iron-containing alcohol dehydrogenase NYR48_RS14860 PF00171 Aldehyde dehydrogenase family NYR48_RS14870 PF17735 Biofilm surface layer A NYR48_RS14875 PF02080 TrkA-C domain NYR48_RS14875 PF02254 TrkA-N domain NYR48_RS14880 PF13457 GW (Gly-Tryp) dipeptide domain NYR48_RS14880 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NYR48_RS14885 PF00042 Globin NYR48_RS14885 PF00175 Oxidoreductase NAD-binding domain NYR48_RS14885 PF00970 Oxidoreductase FAD-binding domain NYR48_RS14905 PF02673 Bacitracin resistance protein BacA NYR48_RS14910 PF01594 AI-2E family transporter NYR48_RS14915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NYR48_RS14915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NYR48_RS14920 PF01965 DJ-1/PfpI family NYR48_RS14925 PF02743 Cache domain NYR48_RS14925 PF00672 HAMP domain NYR48_RS14925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NYR48_RS14930 PF02743 Cache domain NYR48_RS14930 PF00672 HAMP domain NYR48_RS14930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NYR48_RS14935 PF02743 Cache domain NYR48_RS14935 PF00672 HAMP domain NYR48_RS14935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NYR48_RS14940 PF00672 HAMP domain NYR48_RS14940 PF02743 Cache domain NYR48_RS14940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NYR48_RS14955 PF03060 Nitronate monooxygenase NYR48_RS14960 PF01894 Uncharacterised protein family UPF0047 NYR48_RS14965 PF00128 Alpha amylase, catalytic domain NYR48_RS14965 PF16657 Maltogenic Amylase, C-terminal domain NYR48_RS14970 PF00571 CBS domain NYR48_RS14970 PF03471 Transporter associated domain NYR48_RS14970 PF01595 Cyclin M transmembrane N-terminal domain NYR48_RS14975 PF04298 Putative neutral zinc metallopeptidase NYR48_RS14985 PF11458 Membrane-integrating protein Mistic NYR48_RS14990 PF02254 TrkA-N domain NYR48_RS14990 PF07885 Ion channel NYR48_RS14995 PF08868 YugN-like family NYR48_RS15005 PF00342 Phosphoglucose isomerase NYR48_RS15010 PF03358 NADPH-dependent FMN reductase NYR48_RS15015 PF00857 Isochorismatase family NYR48_RS15020 PF00465 Iron-containing alcohol dehydrogenase NYR48_RS15025 PF00465 Iron-containing alcohol dehydrogenase NYR48_RS15030 PF04070 Domain of unknown function (DUF378) NYR48_RS15035 PF00575 S1 RNA binding domain NYR48_RS15040 PF00155 Aminotransferase class I and II NYR48_RS15045 PF01037 Lrp/AsnC ligand binding domain NYR48_RS15050 PF00561 alpha/beta hydrolase fold NYR48_RS15050 PF08386 TAP-like protein NYR48_RS15055 PF08958 Domain of unknown function (DUF1871) NYR48_RS15060 PF00155 Aminotransferase class I and II NYR48_RS15065 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS15065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS15070 PF08810 Kinase associated protein B NYR48_RS15075 PF00929 Exonuclease NYR48_RS15080 PF07690 Major Facilitator Superfamily NYR48_RS15085 PF00912 Transglycosylase NYR48_RS15085 PF00905 Penicillin binding protein transpeptidase domain NYR48_RS15090 PF04134 Protein of unknown function, DUF393 NYR48_RS15095 PF17328 Family of unknown function (DUF5366) NYR48_RS15100 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NYR48_RS15100 PF17203 Single cache domain 3 NYR48_RS15100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS15100 PF00989 PAS fold NYR48_RS15105 PF00072 Response regulator receiver domain NYR48_RS15110 PF02608 ABC transporter substrate-binding protein PnrA-like NYR48_RS15115 PF00005 ABC transporter NYR48_RS15120 PF02653 Branched-chain amino acid transport system / permease component NYR48_RS15125 PF02653 Branched-chain amino acid transport system / permease component NYR48_RS15135 PF13244 Domain of unknown function (DUF4040) NYR48_RS15135 PF00361 Proton-conducting membrane transporter NYR48_RS15135 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NYR48_RS15140 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NYR48_RS15145 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NYR48_RS15150 PF00361 Proton-conducting membrane transporter NYR48_RS15155 PF01899 Na+/H+ ion antiporter subunit NYR48_RS15160 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NYR48_RS15165 PF03334 Na+/H+ antiporter subunit NYR48_RS15170 PF03061 Thioesterase superfamily NYR48_RS15175 PF00196 Bacterial regulatory proteins, luxR family NYR48_RS15175 PF00072 Response regulator receiver domain NYR48_RS15180 PF07730 Histidine kinase NYR48_RS15180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS15190 PF00348 Polyprenyl synthetase NYR48_RS15195 PF08181 DegQ (SacQ) family NYR48_RS15205 PF00563 EAL domain NYR48_RS15205 PF08668 HDOD domain NYR48_RS15210 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NYR48_RS15210 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain NYR48_RS15210 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NYR48_RS15215 PF00857 Isochorismatase family NYR48_RS15220 PF07997 Protein of unknown function (DUF1694) NYR48_RS15225 PF14166 YueH-like protein NYR48_RS15230 PF10676 Spore germination protein gerPA/gerPF NYR48_RS15235 PF01594 AI-2E family transporter NYR48_RS15240 PF10842 Protein of unknown function (DUF2642) NYR48_RS15245 PF01966 HD domain NYR48_RS15250 PF00106 short chain dehydrogenase NYR48_RS15255 PF17355 Family of unknown function (DUF5383) NYR48_RS15265 PF01580 FtsK/SpoIIIE family NYR48_RS15265 PF12538 DNA transporter NYR48_RS15270 PF10140 WXG100 protein secretion system (Wss), protein YukC NYR48_RS15275 PF08817 WXG100 protein secretion system (Wss), protein YukD NYR48_RS15280 PF06013 Proteins of 100 residues with WXG NYR48_RS15285 PF06018 CodY GAF-like domain NYR48_RS15285 PF17853 GGDEF-like domain NYR48_RS15285 PF13556 PucR C-terminal helix-turn-helix domain NYR48_RS15290 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NYR48_RS15290 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NYR48_RS15295 PF10042 Uncharacterized conserved protein (DUF2278) NYR48_RS15300 PF03621 MbtH-like protein NYR48_RS15305 PF00668 Condensation domain NYR48_RS15305 PF00550 Phosphopantetheine attachment site NYR48_RS15305 PF00501 AMP-binding enzyme NYR48_RS15305 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS15305 PF00975 Thioesterase domain NYR48_RS15310 PF00857 Isochorismatase family NYR48_RS15310 PF00550 Phosphopantetheine attachment site NYR48_RS15315 PF00501 AMP-binding enzyme NYR48_RS15315 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS15320 PF00425 chorismate binding enzyme NYR48_RS15325 PF00106 short chain dehydrogenase NYR48_RS15330 PF00756 Putative esterase NYR48_RS15335 PF00174 Oxidoreductase molybdopterin binding domain NYR48_RS15340 PF02632 BioY family NYR48_RS15345 PF13726 Na+-H+ antiporter family NYR48_RS15345 PF03553 Na+/H+ antiporter family NYR48_RS15350 PF00883 Cytosol aminopeptidase family, catalytic domain NYR48_RS15350 PF02789 Cytosol aminopeptidase family, N-terminal domain NYR48_RS15355 PF02681 Divergent PAP2 family NYR48_RS15360 PF06725 3D domain NYR48_RS15365 PF14068 Putative membrane protein NYR48_RS15370 PF17302 Family of unknown function (DUF5351) NYR48_RS15375 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS15380 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS15390 PF00478 IMP dehydrogenase / GMP reductase domain NYR48_RS15405 PF00005 ABC transporter NYR48_RS15415 PF09221 Bacteriocin class IId cyclical uberolysin-like NYR48_RS15425 PF13302 Acetyltransferase (GNAT) domain NYR48_RS15430 PF00106 short chain dehydrogenase NYR48_RS15535 PF02899 Phage integrase, N-terminal SAM-like domain NYR48_RS15535 PF00589 Phage integrase family NYR48_RS15545 PF02899 Phage integrase, N-terminal SAM-like domain NYR48_RS15545 PF00589 Phage integrase family NYR48_RS15550 PF01521 Iron-sulphur cluster biosynthesis NYR48_RS15555 PF01678 Diaminopimelate epimerase NYR48_RS15560 PF07662 Na+ dependent nucleoside transporter C-terminus NYR48_RS15560 PF01773 Na+ dependent nucleoside transporter N-terminus NYR48_RS15565 PF07293 Protein of unknown function (DUF1450) NYR48_RS15570 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS15575 PF07315 Protein of unknown function (DUF1462) NYR48_RS15580 PF01106 NifU-like domain NYR48_RS15585 PF00326 Prolyl oligopeptidase family NYR48_RS15585 PF07676 WD40-like Beta Propeller Repeat NYR48_RS15590 PF08544 GHMP kinases C terminal NYR48_RS15590 PF00288 GHMP kinases N terminal domain NYR48_RS15595 PF00291 Pyridoxal-phosphate dependent enzyme NYR48_RS15600 PF01842 ACT domain NYR48_RS15600 PF00742 Homoserine dehydrogenase NYR48_RS15600 PF03447 Homoserine dehydrogenase, NAD binding domain NYR48_RS15610 PF04608 Phosphatidylglycerophosphatase A NYR48_RS15615 PF13344 Haloacid dehalogenase-like hydrolase NYR48_RS15620 PF01934 Protein of unknown function DUF86 NYR48_RS15625 PF06265 Protein of unknown function (DUF1027) NYR48_RS15630 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NYR48_RS15630 PF04055 Radical SAM superfamily NYR48_RS15635 PF01551 Peptidase family M23 NYR48_RS15640 PF09560 Sporulation protein YunB (Spo_YunB) NYR48_RS15645 PF02872 5'-nucleotidase, C-terminal domain NYR48_RS15650 PF01925 Sulfite exporter TauE/SafE NYR48_RS15655 PF01904 Protein of unknown function DUF72 NYR48_RS15665 PF01979 Amidohydrolase family NYR48_RS15670 PF17853 GGDEF-like domain NYR48_RS15670 PF13556 PucR C-terminal helix-turn-helix domain NYR48_RS15670 PF07905 Purine catabolism regulatory protein-like family NYR48_RS15675 PF18801 response regulator aspartate phosphatase H, N terminal NYR48_RS15675 PF13176 Tetratricopeptide repeat NYR48_RS15690 PF07690 Major Facilitator Superfamily NYR48_RS15695 PF00266 Aminotransferase class-V NYR48_RS15700 PF01546 Peptidase family M20/M25/M40 NYR48_RS15705 PF04231 Endonuclease I NYR48_RS15710 PF17912 MalK OB fold domain NYR48_RS15710 PF03459 TOBE domain NYR48_RS15710 PF00005 ABC transporter NYR48_RS15715 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS15715 PF07702 UTRA domain NYR48_RS15720 PF00294 pfkB family carbohydrate kinase NYR48_RS15725 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS15730 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS15735 PF01547 Bacterial extracellular solute-binding protein NYR48_RS15740 PF01380 SIS domain NYR48_RS15745 PF07853 Protein of unknown function (DUF1648) NYR48_RS15750 PF01541 GIY-YIG catalytic domain NYR48_RS15755 PF01266 FAD dependent oxidoreductase NYR48_RS15760 PF01209 ubiE/COQ5 methyltransferase family NYR48_RS15765 PF10903 Protein of unknown function (DUF2691) NYR48_RS15770 PF01374 Glycosyl hydrolase family 46 NYR48_RS15775 PF01458 Uncharacterized protein family (UPF0051) NYR48_RS15780 PF01592 NifU-like N terminal domain NYR48_RS15785 PF00266 Aminotransferase class-V NYR48_RS15790 PF01458 Uncharacterized protein family (UPF0051) NYR48_RS15795 PF00005 ABC transporter NYR48_RS15805 PF02627 Carboxymuconolactone decarboxylase family NYR48_RS15810 PF03180 NLPA lipoprotein NYR48_RS15815 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS15820 PF00005 ABC transporter NYR48_RS15820 PF09383 NIL domain NYR48_RS15825 PF02036 SCP-2 sterol transfer family NYR48_RS15830 PF00085 Thioredoxin NYR48_RS15835 PF01751 Toprim domain NYR48_RS15840 PF10830 Protein of unknown function (DUF2553) NYR48_RS15845 PF01597 Glycine cleavage H-protein NYR48_RS15850 PF03960 ArsC family NYR48_RS15855 PF02770 Acyl-CoA dehydrogenase, middle domain NYR48_RS15855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NYR48_RS15855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NYR48_RS15860 PF02803 Thiolase, C-terminal domain NYR48_RS15860 PF00108 Thiolase, N-terminal domain NYR48_RS15865 PF00378 Enoyl-CoA hydratase/isomerase NYR48_RS15865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NYR48_RS15865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NYR48_RS15870 PF14115 YuzL-like protein NYR48_RS15875 PF01619 Proline dehydrogenase NYR48_RS15885 PF07875 Coat F domain NYR48_RS15890 PF01047 MarR family NYR48_RS15895 PF07690 Major Facilitator Superfamily NYR48_RS15900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS15900 PF03466 LysR substrate binding domain NYR48_RS15905 PF06314 Acetoacetate decarboxylase (ADC) NYR48_RS15920 PF00005 ABC transporter NYR48_RS15925 PF14039 YusW-like protein NYR48_RS15935 PF00106 short chain dehydrogenase NYR48_RS15940 PF00210 Ferritin-like domain NYR48_RS15945 PF13180 PDZ domain NYR48_RS15950 PF00072 Response regulator receiver domain NYR48_RS15950 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS15955 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS15955 PF00672 HAMP domain NYR48_RS15955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS15965 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS15970 PF10415 Fumarase C C-terminus NYR48_RS15970 PF00206 Lyase NYR48_RS15975 PF13113 Protein of unknown function (DUF3970) NYR48_RS15980 PF03323 Bacillus/Clostridium GerA spore germination protein NYR48_RS15985 PF03845 Spore germination protein NYR48_RS15990 PF05504 Spore germination B3/ GerAC like, C-terminal NYR48_RS15995 PF00196 Bacterial regulatory proteins, luxR family NYR48_RS15995 PF00072 Response regulator receiver domain NYR48_RS16000 PF07730 Histidine kinase NYR48_RS16000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS16000 PF00672 HAMP domain NYR48_RS16005 PF09922 Cell wall-active antibiotics response 4TMS YvqF NYR48_RS16010 PF13349 Putative adhesin NYR48_RS16015 PF04012 PspA/IM30 family NYR48_RS16025 PF07690 Major Facilitator Superfamily NYR48_RS16030 PF01923 Cobalamin adenosyltransferase NYR48_RS16035 PF00005 ABC transporter NYR48_RS16040 PF01032 FecCD transport family NYR48_RS16045 PF01497 Periplasmic binding protein NYR48_RS16050 PF00106 short chain dehydrogenase NYR48_RS16055 PF08450 SMP-30/Gluconolactonase/LRE-like region NYR48_RS16060 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS16060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS16065 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS16065 PF00072 Response regulator receiver domain NYR48_RS16075 PF04545 Sigma-70, region 4 NYR48_RS16080 PF12841 YvrJ protein family NYR48_RS16085 PF00190 Cupin NYR48_RS16090 PF14184 Regulatory protein YrvL NYR48_RS16095 PF00005 ABC transporter NYR48_RS16100 PF01032 FecCD transport family NYR48_RS16105 PF01032 FecCD transport family NYR48_RS16110 PF01497 Periplasmic binding protein NYR48_RS16115 PF04072 Leucine carboxyl methyltransferase NYR48_RS16120 PF13520 Amino acid permease NYR48_RS16125 PF09575 Small spore protein J (Spore_SspJ) NYR48_RS16130 PF04307 LexA-binding, inner membrane-associated putative hydrolase NYR48_RS16135 PF00884 Sulfatase NYR48_RS16140 PF12728 Helix-turn-helix domain NYR48_RS16140 PF12727 PBP superfamily domain NYR48_RS16150 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS16155 PF00072 Response regulator receiver domain NYR48_RS16155 PF00196 Bacterial regulatory proteins, luxR family NYR48_RS16160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS16160 PF07730 Histidine kinase NYR48_RS16160 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NYR48_RS16160 PF00672 HAMP domain NYR48_RS16165 PF00005 ABC transporter NYR48_RS16180 PF00248 Aldo/keto reductase family NYR48_RS16190 PF00999 Sodium/hydrogen exchanger family NYR48_RS16195 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NYR48_RS16195 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NYR48_RS16200 PF00667 FAD binding domain NYR48_RS16200 PF00258 Flavodoxin NYR48_RS16200 PF00175 Oxidoreductase NAD-binding domain NYR48_RS16205 PF13538 UvrD-like helicase C-terminal domain NYR48_RS16210 PF03458 UPF0126 domain NYR48_RS16220 PF02600 Disulfide bond formation protein DsbB NYR48_RS16225 PF13462 Thioredoxin NYR48_RS16230 PF00403 Heavy-metal-associated domain NYR48_RS16235 PF00403 Heavy-metal-associated domain NYR48_RS16240 PF00403 Heavy-metal-associated domain NYR48_RS16245 PF02583 Metal-sensitive transcriptional repressor NYR48_RS16250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NYR48_RS16250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NYR48_RS16255 PF02525 Flavodoxin-like fold NYR48_RS16260 PF00296 Luciferase-like monooxygenase NYR48_RS16265 PF00462 Glutaredoxin NYR48_RS16270 PF00296 Luciferase-like monooxygenase NYR48_RS16275 PF00005 ABC transporter NYR48_RS16280 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS16285 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS16290 PF00497 Bacterial extracellular solute-binding proteins, family 3 NYR48_RS16295 PF00497 Bacterial extracellular solute-binding proteins, family 3 NYR48_RS16300 PF00583 Acetyltransferase (GNAT) family NYR48_RS16305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS16305 PF03466 LysR substrate binding domain NYR48_RS16310 PF00106 short chain dehydrogenase NYR48_RS16315 PF01337 Barstar (barnase inhibitor) NYR48_RS16320 PF01337 Barstar (barnase inhibitor) NYR48_RS16330 PF01668 SmpB protein NYR48_RS16335 PF17876 Cold shock domain NYR48_RS16335 PF08206 Ribonuclease B OB domain NYR48_RS16335 PF00773 RNB domain NYR48_RS16335 PF00575 S1 RNA binding domain NYR48_RS16340 PF12146 Serine aminopeptidase, S33 NYR48_RS16345 PF03840 Preprotein translocase SecG subunit NYR48_RS16350 PF01381 Helix-turn-helix NYR48_RS16365 PF01638 HxlR-like helix-turn-helix NYR48_RS16370 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS16370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS16375 PF00072 Response regulator receiver domain NYR48_RS16375 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS16390 PF00005 ABC transporter NYR48_RS16395 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS16400 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NYR48_RS16405 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS16410 PF00571 CBS domain NYR48_RS16410 PF00005 ABC transporter NYR48_RS16415 PF12802 MarR family NYR48_RS16420 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS16425 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NYR48_RS16430 PF00528 Binding-protein-dependent transport system inner membrane component NYR48_RS16435 PF00571 CBS domain NYR48_RS16435 PF00005 ABC transporter NYR48_RS16440 PF12802 MarR family NYR48_RS16445 PF01914 MarC family integral membrane protein NYR48_RS16455 PF13240 zinc-ribbon domain NYR48_RS16460 PF00583 Acetyltransferase (GNAT) family NYR48_RS16465 PF00113 Enolase, C-terminal TIM barrel domain NYR48_RS16465 PF03952 Enolase, N-terminal domain NYR48_RS16470 PF01676 Metalloenzyme superfamily NYR48_RS16470 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NYR48_RS16475 PF00121 Triosephosphate isomerase NYR48_RS16480 PF00162 Phosphoglycerate kinase NYR48_RS16485 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NYR48_RS16485 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NYR48_RS16490 PF04198 Putative sugar-binding domain NYR48_RS16495 PF00083 Sugar (and other) transporter NYR48_RS16500 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS16505 PF00296 Luciferase-like monooxygenase NYR48_RS16515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS16515 PF03466 LysR substrate binding domain NYR48_RS16520 PF00892 EamA-like transporter family NYR48_RS16525 PF00324 Amino acid permease NYR48_RS16535 PF00356 Bacterial regulatory proteins, lacI family NYR48_RS16550 PF01418 Helix-turn-helix domain, rpiR family NYR48_RS16550 PF01380 SIS domain NYR48_RS16555 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NYR48_RS16555 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NYR48_RS16560 PF02447 GntP family permease NYR48_RS16565 PF02589 LUD domain NYR48_RS16570 PF11870 Domain of unknown function (DUF3390) NYR48_RS16570 PF02589 LUD domain NYR48_RS16570 PF13183 4Fe-4S dicluster domain NYR48_RS16575 PF02754 Cysteine-rich domain NYR48_RS16580 PF00155 Aminotransferase class I and II NYR48_RS16585 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS16585 PF07729 FCD domain NYR48_RS16590 PF02652 L-lactate permease NYR48_RS16595 PF04552 Sigma-54, DNA binding domain NYR48_RS16595 PF04963 Sigma-54 factor, core binding domain NYR48_RS16595 PF00309 Sigma-54 factor, Activator interacting domain (AID) NYR48_RS16600 PF09628 YvfG protein NYR48_RS16605 PF04230 Polysaccharide pyruvyl transferase NYR48_RS16610 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NYR48_RS16615 PF17836 PglD N-terminal domain NYR48_RS16615 PF00132 Bacterial transferase hexapeptide (six repeats) NYR48_RS16620 PF02397 Bacterial sugar transferase NYR48_RS16625 PF14667 Polysaccharide biosynthesis C-terminal domain NYR48_RS16625 PF01943 Polysaccharide biosynthesis protein NYR48_RS16630 PF00535 Glycosyl transferase family 2 NYR48_RS16635 PF04230 Polysaccharide pyruvyl transferase NYR48_RS16640 PF00535 Glycosyl transferase family 2 NYR48_RS16650 PF00534 Glycosyl transferases group 1 NYR48_RS16650 PF13439 Glycosyltransferase Family 4 NYR48_RS16655 PF00535 Glycosyl transferase family 2 NYR48_RS16660 PF13439 Glycosyltransferase Family 4 NYR48_RS16660 PF00534 Glycosyl transferases group 1 NYR48_RS16665 PF02719 Polysaccharide biosynthesis protein NYR48_RS16670 PF13614 AAA domain NYR48_RS16675 PF02706 Chain length determinant protein NYR48_RS16680 PF01381 Helix-turn-helix NYR48_RS16680 PF08671 Anti-repressor SinI NYR48_RS16685 PF00135 Carboxylesterase family NYR48_RS16695 PF01872 RibD C-terminal domain NYR48_RS16705 PF00583 Acetyltransferase (GNAT) family NYR48_RS16710 PF05870 Phenolic acid decarboxylase (PAD) NYR48_RS16745 PF08244 Glycosyl hydrolases family 32 C terminal NYR48_RS16745 PF00251 Glycosyl hydrolases family 32 N-terminal domain NYR48_RS16750 PF01306 LacY proton/sugar symporter NYR48_RS16755 PF00356 Bacterial regulatory proteins, lacI family NYR48_RS16760 PF00574 Clp protease NYR48_RS16765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS16765 PF03466 LysR substrate binding domain NYR48_RS16770 PF04303 PrpF protein NYR48_RS16775 PF00083 Sugar (and other) transporter NYR48_RS16780 PF03641 Possible lysine decarboxylase NYR48_RS16785 PF03819 MazG nucleotide pyrophosphohydrolase domain NYR48_RS16790 PF01740 STAS domain NYR48_RS16790 PF00916 Sulfate permease family NYR48_RS16795 PF00484 Carbonic anhydrase NYR48_RS16800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NYR48_RS16800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NYR48_RS16805 PF00545 ribonuclease NYR48_RS16810 PF00797 N-acetyltransferase NYR48_RS16815 PF00381 PTS HPr component phosphorylation site NYR48_RS16820 PF02650 WhiA C-terminal HTH domain NYR48_RS16820 PF10298 WhiA N-terminal LAGLIDADG-like domain NYR48_RS16820 PF14527 WhiA LAGLIDADG-like domain NYR48_RS16825 PF01933 Uncharacterised protein family UPF0052 NYR48_RS16830 PF03668 P-loop ATPase protein family NYR48_RS16835 PF00293 NUDIX domain NYR48_RS16840 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS16845 PF00877 NlpC/P60 family NYR48_RS16860 PF00989 PAS fold NYR48_RS16860 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS16860 PF18698 Histidine kinase sensor domain NYR48_RS16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS16860 PF00672 HAMP domain NYR48_RS16865 PF00072 Response regulator receiver domain NYR48_RS16865 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS16875 PF00005 ABC transporter NYR48_RS16875 PF00664 ABC transporter transmembrane region NYR48_RS16880 PF01502 Phosphoribosyl-AMP cyclohydrolase NYR48_RS16880 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NYR48_RS16885 PF00977 Histidine biosynthesis protein NYR48_RS16890 PF00977 Histidine biosynthesis protein NYR48_RS16895 PF00117 Glutamine amidotransferase class-I NYR48_RS16900 PF00475 Imidazoleglycerol-phosphate dehydratase NYR48_RS16905 PF00815 Histidinol dehydrogenase NYR48_RS16910 PF01634 ATP phosphoribosyltransferase NYR48_RS16915 PF13393 Histidyl-tRNA synthetase NYR48_RS16920 PF13529 Peptidase_C39 like family NYR48_RS16925 PF14602 Hexapeptide repeat of succinyl-transferase NYR48_RS16930 PF13419 Haloacid dehalogenase-like hydrolase NYR48_RS16935 PF01790 Prolipoprotein diacylglyceryl transferase NYR48_RS16940 PF02603 HPr Serine kinase N terminus NYR48_RS16940 PF07475 HPr Serine kinase C-terminal domain NYR48_RS16945 PF01979 Amidohydrolase family NYR48_RS16950 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NYR48_RS16955 PF07702 UTRA domain NYR48_RS16955 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS16960 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS16965 PF00149 Calcineurin-like phosphoesterase NYR48_RS16970 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV NYR48_RS16975 PF04024 PspC domain NYR48_RS16980 PF13349 Putative adhesin NYR48_RS16995 PF17760 UvrA interaction domain NYR48_RS16995 PF17755 UvrA DNA-binding domain NYR48_RS16995 PF00005 ABC transporter NYR48_RS17000 PF17757 UvrB interaction domain NYR48_RS17000 PF12344 Ultra-violet resistance protein B NYR48_RS17000 PF02151 UvrB/uvrC motif NYR48_RS17000 PF00271 Helicase conserved C-terminal domain NYR48_RS17000 PF04851 Type III restriction enzyme, res subunit NYR48_RS17005 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) NYR48_RS17010 PF00391 PEP-utilising enzyme, mobile domain NYR48_RS17010 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NYR48_RS17015 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS17020 PF07690 Major Facilitator Superfamily NYR48_RS17030 PF17820 PDZ domain NYR48_RS17035 PF17423 Swarming motility protein NYR48_RS17040 PF17820 PDZ domain NYR48_RS17040 PF03572 Peptidase family S41 NYR48_RS17040 PF01471 Putative peptidoglycan binding domain NYR48_RS17045 PF13229 Right handed beta helix region NYR48_RS17050 PF18075 FtsX extracellular domain NYR48_RS17050 PF02687 FtsX-like permease family NYR48_RS17055 PF00005 ABC transporter NYR48_RS17060 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NYR48_RS17065 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR48_RS17065 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NYR48_RS17075 PF02810 SEC-C motif NYR48_RS17075 PF07516 SecA Wing and Scaffold domain NYR48_RS17075 PF01043 SecA preprotein cross-linking domain NYR48_RS17075 PF07517 SecA DEAD-like domain NYR48_RS17080 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NYR48_RS17080 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NYR48_RS17095 PF02561 Flagellar protein FliS NYR48_RS17100 PF02465 Flagellar hook-associated protein 2 N-terminus NYR48_RS17100 PF07195 Flagellar hook-associated protein 2 C-terminus NYR48_RS17100 PF07196 Flagellin hook IN motif NYR48_RS17105 PF00700 Bacterial flagellin C-terminal helical region NYR48_RS17105 PF00669 Bacterial flagellin N-terminal helical region NYR48_RS17110 PF02599 Global regulator protein family NYR48_RS17115 PF02623 FliW protein NYR48_RS17125 PF00669 Bacterial flagellin N-terminal helical region NYR48_RS17125 PF00700 Bacterial flagellin C-terminal helical region NYR48_RS17130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NYR48_RS17130 PF00460 Flagella basal body rod protein NYR48_RS17135 PF05130 FlgN protein NYR48_RS17140 PF04316 Anti-sigma-28 factor, FlgM NYR48_RS17155 PF10719 Late competence development protein ComFB NYR48_RS17160 PF00271 Helicase conserved C-terminal domain NYR48_RS17160 PF04851 Type III restriction enzyme, res subunit NYR48_RS17165 PF02645 Uncharacterised protein, DegV family COG1307 NYR48_RS17170 PF00196 Bacterial regulatory proteins, luxR family NYR48_RS17170 PF00072 Response regulator receiver domain NYR48_RS17175 PF07730 Histidine kinase NYR48_RS17175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS17175 PF05384 Sensor protein DegS NYR48_RS17180 PF09186 Domain of unknown function (DUF1949) NYR48_RS17180 PF01205 Uncharacterized protein family UPF0029 NYR48_RS17185 PF03816 Cell envelope-related transcriptional attenuator domain NYR48_RS17190 PF00953 Glycosyl transferase family 4 NYR48_RS17200 PF00535 Glycosyl transferase family 2 NYR48_RS17205 PF02706 Chain length determinant protein NYR48_RS17210 PF04932 O-Antigen ligase NYR48_RS17215 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NYR48_RS17215 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NYR48_RS17215 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NYR48_RS17220 PF00534 Glycosyl transferases group 1 NYR48_RS17220 PF13439 Glycosyltransferase Family 4 NYR48_RS17225 PF14667 Polysaccharide biosynthesis C-terminal domain NYR48_RS17225 PF01943 Polysaccharide biosynthesis protein NYR48_RS17230 PF02397 Bacterial sugar transferase NYR48_RS17235 PF04122 Putative cell wall binding repeat 2 NYR48_RS17235 PF01520 N-acetylmuramoyl-L-alanine amidase NYR48_RS17240 PF08486 Stage II sporulation protein NYR48_RS17240 PF04122 Putative cell wall binding repeat 2 NYR48_RS17250 PF03816 Cell envelope-related transcriptional attenuator domain NYR48_RS17260 PF02350 UDP-N-acetylglucosamine 2-epimerase NYR48_RS17265 PF00483 Nucleotidyl transferase NYR48_RS17270 PF00005 ABC transporter NYR48_RS17275 PF01061 ABC-2 type transporter NYR48_RS17280 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NYR48_RS17285 PF00535 Glycosyl transferase family 2 NYR48_RS17290 PF01467 Cytidylyltransferase-like NYR48_RS17295 PF03808 Glycosyl transferase WecB/TagA/CpsF family NYR48_RS17300 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NYR48_RS17305 PF05036 Sporulation related domain NYR48_RS17305 PF08239 Bacterial SH3 domain NYR48_RS17305 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NYR48_RS17310 PF01238 Phosphomannose isomerase type I NYR48_RS17315 PF03323 Bacillus/Clostridium GerA spore germination protein NYR48_RS17320 PF03845 Spore germination protein NYR48_RS17325 PF05504 Spore germination B3/ GerAC like, C-terminal NYR48_RS17335 PF00083 Sugar (and other) transporter NYR48_RS17340 PF03816 Cell envelope-related transcriptional attenuator domain NYR48_RS17350 PF04791 LMBR1-like membrane protein NYR48_RS17355 PF00877 NlpC/P60 family NYR48_RS17365 PF09587 Bacterial capsule synthesis protein PGA_cap NYR48_RS17370 PF14102 Capsule biosynthesis CapC NYR48_RS17375 PF08245 Mur ligase middle domain NYR48_RS17380 PF03323 Bacillus/Clostridium GerA spore germination protein NYR48_RS17385 PF03845 Spore germination protein NYR48_RS17395 PF00356 Bacterial regulatory proteins, lacI family NYR48_RS17400 PF00294 pfkB family carbohydrate kinase NYR48_RS17405 PF05025 RbsD / FucU transport protein family NYR48_RS17410 PF00005 ABC transporter NYR48_RS17415 PF02653 Branched-chain amino acid transport system / permease component NYR48_RS17420 PF13407 Periplasmic binding protein domain NYR48_RS17425 PF08239 Bacterial SH3 domain NYR48_RS17430 PF02525 Flavodoxin-like fold NYR48_RS17435 PF03306 Alpha-acetolactate decarboxylase NYR48_RS17440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NYR48_RS17440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NYR48_RS17440 PF00205 Thiamine pyrophosphate enzyme, central domain NYR48_RS17445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS17445 PF03466 LysR substrate binding domain NYR48_RS17450 PF02040 Arsenical pump membrane protein NYR48_RS17465 PF08757 CotH kinase protein NYR48_RS17475 PF01613 Flavin reductase like domain NYR48_RS17490 PF13404 AsnC-type helix-turn-helix domain NYR48_RS17490 PF01037 Lrp/AsnC ligand binding domain NYR48_RS17495 PF02417 Chromate transporter NYR48_RS17500 PF02417 Chromate transporter NYR48_RS17505 PF04493 Endonuclease V NYR48_RS17520 PF14431 YwqJ-like deaminase NYR48_RS17520 PF14449 Pre-toxin TG NYR48_RS17520 PF04740 LXG domain of WXG superfamily NYR48_RS17530 PF16888 Domain of unknown function (DUF5082) NYR48_RS17535 PF09234 Domain of unknown function (DUF1963) NYR48_RS17540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NYR48_RS17540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NYR48_RS17540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NYR48_RS17550 PF13614 AAA domain NYR48_RS17555 PF13807 G-rich domain on putative tyrosine kinase NYR48_RS17555 PF02706 Chain length determinant protein NYR48_RS17565 PF04434 SWIM zinc finger NYR48_RS17570 PF00176 SNF2 family N-terminal domain NYR48_RS17570 PF00271 Helicase conserved C-terminal domain NYR48_RS17570 PF12419 SNF2 Helicase protein NYR48_RS17580 PF00455 DeoR C terminal sensor domain NYR48_RS17580 PF08220 DeoR-like helix-turn-helix domain NYR48_RS17585 PF00436 Single-strand binding protein family NYR48_RS17595 PF14183 YwpF-like protein NYR48_RS17600 PF01741 Large-conductance mechanosensitive channel, MscL NYR48_RS17605 PF07977 FabA-like domain NYR48_RS17610 PF18801 response regulator aspartate phosphatase H, N terminal NYR48_RS17615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NYR48_RS17615 PF00460 Flagella basal body rod protein NYR48_RS17620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NYR48_RS17620 PF00460 Flagella basal body rod protein NYR48_RS17630 PF12116 Stage III sporulation protein D NYR48_RS17635 PF01047 MarR family NYR48_RS17640 PF07690 Major Facilitator Superfamily NYR48_RS17645 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NYR48_RS17650 PF07690 Major Facilitator Superfamily NYR48_RS17655 PF00857 Isochorismatase family NYR48_RS17660 PF00909 Ammonium Transporter Family NYR48_RS17665 PF00543 Nitrogen regulatory protein P-II NYR48_RS17670 PF01098 Cell cycle protein NYR48_RS17675 PF01569 PAP2 superfamily NYR48_RS17680 PF04892 VanZ like family NYR48_RS17685 PF01551 Peptidase family M23 NYR48_RS17690 PF00583 Acetyltransferase (GNAT) family NYR48_RS17695 PF17319 Family of unknown function (DUF5362) NYR48_RS17700 PF17370 Family of unknown function (DUF5392) NYR48_RS17705 PF13091 PLD-like domain NYR48_RS17705 PF13396 Phospholipase_D-nuclease N-terminal NYR48_RS17710 PF17319 Family of unknown function (DUF5362) NYR48_RS17715 PF00457 Glycosyl hydrolases family 11 NYR48_RS17720 PF02082 Transcriptional regulator NYR48_RS17725 PF01979 Amidohydrolase family NYR48_RS17725 PF00449 Urease alpha-subunit, N-terminal domain NYR48_RS17730 PF00699 Urease beta subunit NYR48_RS17735 PF00547 Urease, gamma subunit NYR48_RS17750 PF17874 MalT-like TPR region NYR48_RS17750 PF18801 response regulator aspartate phosphatase H, N terminal NYR48_RS17755 PF04055 Radical SAM superfamily NYR48_RS17755 PF06463 Molybdenum Cofactor Synthesis C NYR48_RS17760 PF02634 FdhD/NarQ family NYR48_RS17770 PF00092 von Willebrand factor type A domain NYR48_RS17775 PF00092 von Willebrand factor type A domain NYR48_RS17780 PF08486 Stage II sporulation protein NYR48_RS17785 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NYR48_RS17790 PF08680 TATA-box binding NYR48_RS17795 PF06612 Protein of unknown function (DUF1146) NYR48_RS17805 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NYR48_RS17805 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NYR48_RS17810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NYR48_RS17810 PF02874 ATP synthase alpha/beta family, beta-barrel domain NYR48_RS17815 PF00231 ATP synthase NYR48_RS17820 PF02874 ATP synthase alpha/beta family, beta-barrel domain NYR48_RS17820 PF00306 ATP synthase alpha/beta chain, C terminal domain NYR48_RS17820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NYR48_RS17825 PF00213 ATP synthase delta (OSCP) subunit NYR48_RS17830 PF00430 ATP synthase B/B' CF(0) NYR48_RS17835 PF00137 ATP synthase subunit C NYR48_RS17840 PF00119 ATP synthase A chain NYR48_RS17845 PF03899 ATP synthase I chain NYR48_RS17855 PF00464 Serine hydroxymethyltransferase NYR48_RS17860 PF04260 Protein of unknown function (DUF436) NYR48_RS17865 PF02502 Ribose/Galactose Isomerase NYR48_RS17870 PF01451 Low molecular weight phosphotyrosine protein phosphatase NYR48_RS17875 PF02659 Putative manganese efflux pump NYR48_RS17880 PF03481 Putative GTP-binding controlling metal-binding NYR48_RS17880 PF01300 Telomere recombination NYR48_RS17890 PF09551 Stage II sporulation protein R (spore_II_R) NYR48_RS17895 PF17094 Uncharacterised protein family (UPF0715) NYR48_RS17900 PF17247 Family of unknown function (DUF5316) NYR48_RS17905 PF05175 Methyltransferase small domain NYR48_RS17905 PF17827 PrmC N-terminal domain NYR48_RS17910 PF03462 PCRF domain NYR48_RS17910 PF00472 RF-1 domain NYR48_RS17915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR48_RS17920 PF13411 MerR HTH family regulatory protein NYR48_RS17925 PF03547 Membrane transport protein NYR48_RS17930 PF00390 Malic enzyme, N-terminal domain NYR48_RS17930 PF03949 Malic enzyme, NAD binding domain NYR48_RS17935 PF00265 Thymidine kinase NYR48_RS17940 PF01197 Ribosomal protein L31 NYR48_RS17945 PF07498 Rho termination factor, N-terminal domain NYR48_RS17945 PF07497 Rho termination factor, RNA-binding domain NYR48_RS17945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NYR48_RS17955 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NYR48_RS17960 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NYR48_RS17965 PF00923 Transaldolase/Fructose-6-phosphate aldolase NYR48_RS17970 PF01116 Fructose-bisphosphate aldolase class-II NYR48_RS17975 PF00072 Response regulator receiver domain NYR48_RS17980 PF10740 Domain of unknown function (DUF2529) NYR48_RS17985 PF06418 CTP synthase N-terminus NYR48_RS17985 PF00117 Glutamine amidotransferase class-I NYR48_RS17990 PF05066 HB1, ASXL, restriction endonuclease HTH domain NYR48_RS17995 PF02754 Cysteine-rich domain NYR48_RS17995 PF13183 4Fe-4S dicluster domain NYR48_RS18000 PF13091 PLD-like domain NYR48_RS18005 PF03851 UV-endonuclease UvdE NYR48_RS18015 PF00664 ABC transporter transmembrane region NYR48_RS18015 PF00005 ABC transporter NYR48_RS18020 PF13091 PLD-like domain NYR48_RS18020 PF13396 Phospholipase_D-nuclease N-terminal NYR48_RS18030 PF02665 Nitrate reductase gamma subunit NYR48_RS18035 PF02613 Nitrate reductase delta subunit NYR48_RS18040 PF13247 4Fe-4S dicluster domain NYR48_RS18040 PF14711 Respiratory nitrate reductase beta C-terminal NYR48_RS18045 PF14710 Respiratory nitrate reductase alpha N-terminal NYR48_RS18045 PF01568 Molydopterin dinucleotide binding domain NYR48_RS18045 PF00384 Molybdopterin oxidoreductase NYR48_RS18055 PF14256 YwiC-like protein NYR48_RS18060 PF00325 Bacterial regulatory proteins, crp family NYR48_RS18060 PF00027 Cyclic nucleotide-binding domain NYR48_RS18065 PF07690 Major Facilitator Superfamily NYR48_RS18070 PF00750 tRNA synthetases class I (R) NYR48_RS18070 PF05746 DALR anticodon binding domain NYR48_RS18070 PF03485 Arginyl tRNA synthetase N terminal domain NYR48_RS18075 PF09148 Domain of unknown function (DUF1934) NYR48_RS18080 PF18801 response regulator aspartate phosphatase H, N terminal NYR48_RS18085 PF11131 Rap-phr extracellular signalling NYR48_RS18120 PF00491 Arginase family NYR48_RS18125 PF17284 Spermidine synthase tetramerisation domain NYR48_RS18130 PF00912 Transglycosylase NYR48_RS18130 PF00905 Penicillin binding protein transpeptidase domain NYR48_RS18140 PF08741 YwhD family NYR48_RS18145 PF02163 Peptidase family M50 NYR48_RS18150 PF01361 Tautomerase enzyme NYR48_RS18155 PF01047 MarR family NYR48_RS18160 PF13520 Amino acid permease NYR48_RS18170 PF01966 HD domain NYR48_RS18175 PF07293 Protein of unknown function (DUF1450) NYR48_RS18190 PF03099 Biotin/lipoate A/B protein ligase family NYR48_RS18195 PF03466 LysR substrate binding domain NYR48_RS18195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS18200 PF03601 Conserved hypothetical protein 698 NYR48_RS18205 PF01515 Phosphate acetyl/butaryl transferase NYR48_RS18210 PF06778 Chlorite dismutase NYR48_RS18220 PF00155 Aminotransferase class I and II NYR48_RS18225 PF07690 Major Facilitator Superfamily NYR48_RS18240 PF07883 Cupin domain NYR48_RS18250 PF07690 Major Facilitator Superfamily NYR48_RS18255 PF07690 Major Facilitator Superfamily NYR48_RS18260 PF00324 Amino acid permease NYR48_RS18265 PF01546 Peptidase family M20/M25/M40 NYR48_RS18270 PF00171 Aldehyde dehydrogenase family NYR48_RS18275 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NYR48_RS18275 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NYR48_RS18280 PF17735 Biofilm surface layer A NYR48_RS18285 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NYR48_RS18290 PF04321 RmlD substrate binding domain NYR48_RS18295 PF16363 GDP-mannose 4,6 dehydratase NYR48_RS18300 PF00483 Nucleotidyl transferase NYR48_RS18305 PF04101 Glycosyltransferase family 28 C-terminal domain NYR48_RS18310 PF02348 Cytidylyltransferase NYR48_RS18315 PF08666 SAF domain NYR48_RS18315 PF03102 NeuB family NYR48_RS18320 PF00583 Acetyltransferase (GNAT) family NYR48_RS18325 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NYR48_RS18330 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NYR48_RS18335 PF00535 Glycosyl transferase family 2 NYR48_RS18340 PF09671 Spore coat protein (Spore_GerQ) NYR48_RS18345 PF04241 Protein of unknown function (DUF423) NYR48_RS18350 PF00860 Permease family NYR48_RS18355 PF17261 Family of unknown function (DUF5327) NYR48_RS18360 PF03167 Uracil DNA glycosylase superfamily NYR48_RS18365 PF00535 Glycosyl transferase family 2 NYR48_RS18380 PF03551 Transcriptional regulator PadR-like family NYR48_RS18385 PF08543 Phosphomethylpyrimidine kinase NYR48_RS18395 PF00251 Glycosyl hydrolases family 32 N-terminal domain NYR48_RS18395 PF08244 Glycosyl hydrolases family 32 C terminal NYR48_RS18400 PF02378 Phosphotransferase system, EIIC NYR48_RS18400 PF00367 phosphotransferase system, EIIB NYR48_RS18405 PF00874 PRD domain NYR48_RS18405 PF03123 CAT RNA binding domain NYR48_RS18415 PF13860 FlgD Ig-like domain NYR48_RS18415 PF05922 Peptidase inhibitor I9 NYR48_RS18415 PF02225 PA domain NYR48_RS18415 PF00082 Subtilase family NYR48_RS18420 PF00296 Luciferase-like monooxygenase NYR48_RS18430 PF00881 Nitroreductase family NYR48_RS18435 PF01098 Cell cycle protein NYR48_RS18440 PF00583 Acetyltransferase (GNAT) family NYR48_RS18445 PF17368 Spore morphogenesis and germination YwcE NYR48_RS18450 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NYR48_RS18455 PF00510 Cytochrome c oxidase subunit III NYR48_RS18460 PF00115 Cytochrome C and Quinol oxidase polypeptide I NYR48_RS18465 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NYR48_RS18465 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NYR48_RS18470 PF04226 Transglycosylase associated protein NYR48_RS18475 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NYR48_RS18475 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NYR48_RS18480 PF00288 GHMP kinases N terminal domain NYR48_RS18480 PF08544 GHMP kinases C terminal NYR48_RS18480 PF10509 Galactokinase galactose-binding signature NYR48_RS18485 PF04138 GtrA-like protein NYR48_RS18490 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS18495 PF08671 Anti-repressor SinI NYR48_RS18510 PF01323 DSBA-like thioredoxin domain NYR48_RS18515 PF10518 TAT (twin-arginine translocation) pathway signal sequence NYR48_RS18515 PF04261 Dyp-type peroxidase family NYR48_RS18525 PF02581 Thiamine monophosphate synthase NYR48_RS18530 PF02110 Hydroxyethylthiazole kinase family NYR48_RS18535 PF03466 LysR substrate binding domain NYR48_RS18535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS18540 PF03788 LrgA family NYR48_RS18545 PF04172 LrgB-like family NYR48_RS18550 PF09962 Uncharacterized conserved protein (DUF2196) NYR48_RS18555 PF07739 TipAS antibiotic-recognition domain NYR48_RS18555 PF13411 MerR HTH family regulatory protein NYR48_RS18560 PF10026 Predicted Zn-dependent protease (DUF2268) NYR48_RS18565 PF17785 PUA-like domain NYR48_RS18565 PF10672 S-adenosylmethionine-dependent methyltransferase NYR48_RS18570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR48_RS18575 PF02378 Phosphotransferase system, EIIC NYR48_RS18580 PF00082 Subtilase family NYR48_RS18585 PF01501 Glycosyl transferase family 8 NYR48_RS18590 PF04607 Region found in RelA / SpoT proteins NYR48_RS18595 PF01040 UbiA prenyltransferase family NYR48_RS18600 PF12459 D-Ala-teichoic acid biosynthesis protein NYR48_RS18605 PF00501 AMP-binding enzyme NYR48_RS18605 PF13193 AMP-binding enzyme C-terminal domain NYR48_RS18610 PF03062 MBOAT, membrane-bound O-acyltransferase family NYR48_RS18615 PF00550 Phosphopantetheine attachment site NYR48_RS18620 PF04914 DltD protein NYR48_RS18625 PF01063 Amino-transferase class IV NYR48_RS18630 PF11975 Family 4 glycosyl hydrolase C-terminal domain NYR48_RS18630 PF02056 Family 4 glycosyl hydrolase NYR48_RS18635 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NYR48_RS18640 PF02378 Phosphotransferase system, EIIC NYR48_RS18645 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NYR48_RS18650 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NYR48_RS18650 PF00874 PRD domain NYR48_RS18650 PF05043 Mga helix-turn-helix domain NYR48_RS18650 PF08279 HTH domain NYR48_RS18660 PF02245 Methylpurine-DNA glycosylase (MPG) NYR48_RS18665 PF01032 FecCD transport family NYR48_RS18670 PF01032 FecCD transport family NYR48_RS18680 PF01022 Bacterial regulatory protein, arsR family NYR48_RS18685 PF02040 Arsenical pump membrane protein NYR48_RS18690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NYR48_RS18695 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NYR48_RS18700 PF02378 Phosphotransferase system, EIIC NYR48_RS18705 PF00232 Glycosyl hydrolase family 1 NYR48_RS18710 PF00480 ROK family NYR48_RS18715 PF01238 Phosphomannose isomerase type I NYR48_RS18720 PF02156 Glycosyl hydrolase family 26 NYR48_RS18725 PF06628 Catalase-related immune-responsive NYR48_RS18725 PF00199 Catalase NYR48_RS18735 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family NYR48_RS18740 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NYR48_RS18745 PF01256 Carbohydrate kinase NYR48_RS18750 PF00664 ABC transporter transmembrane region NYR48_RS18750 PF00005 ABC transporter NYR48_RS18755 PF00664 ABC transporter transmembrane region NYR48_RS18755 PF00005 ABC transporter NYR48_RS18760 PF02322 Cytochrome bd terminal oxidase subunit II NYR48_RS18765 PF01654 Cytochrome bd terminal oxidase subunit I NYR48_RS18770 PF03390 2-hydroxycarboxylate transporter family NYR48_RS18775 PF01522 Polysaccharide deacetylase NYR48_RS18780 PF03459 TOBE domain NYR48_RS18780 PF17912 MalK OB fold domain NYR48_RS18780 PF00005 ABC transporter NYR48_RS18785 PF13556 PucR C-terminal helix-turn-helix domain NYR48_RS18790 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR48_RS18790 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NYR48_RS18795 PF11611 Domain of unknown function (DUF4352) NYR48_RS18800 PF16363 GDP-mannose 4,6 dehydratase NYR48_RS18805 PF07687 Peptidase dimerisation domain NYR48_RS18805 PF01546 Peptidase family M20/M25/M40 NYR48_RS18815 PF04525 LURP-one-related NYR48_RS18820 PF01717 Cobalamin-independent synthase, Catalytic domain NYR48_RS18825 PF08241 Methyltransferase domain NYR48_RS18830 PF07662 Na+ dependent nucleoside transporter C-terminus NYR48_RS18830 PF01773 Na+ dependent nucleoside transporter N-terminus NYR48_RS18845 PF00199 Catalase NYR48_RS18845 PF06628 Catalase-related immune-responsive NYR48_RS18845 PF18011 C-terminal domain found in long catalases NYR48_RS18850 PF03600 Citrate transporter NYR48_RS18855 PF00722 Glycosyl hydrolases family 16 NYR48_RS18860 PF03123 CAT RNA binding domain NYR48_RS18860 PF00874 PRD domain NYR48_RS18865 PF11700 Vacuole effluxer Atg22 like NYR48_RS18870 PF00271 Helicase conserved C-terminal domain NYR48_RS18870 PF00270 DEAD/DEAH box helicase NYR48_RS18870 PF03880 DbpA RNA binding domain NYR48_RS18875 PF00544 Pectate lyase NYR48_RS18880 PF00892 EamA-like transporter family NYR48_RS18885 PF00582 Universal stress protein family NYR48_RS18890 PF00232 Glycosyl hydrolase family 1 NYR48_RS18895 PF02378 Phosphotransferase system, EIIC NYR48_RS18895 PF00367 phosphotransferase system, EIIB NYR48_RS18895 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NYR48_RS18905 PF00293 NUDIX domain NYR48_RS18910 PF04616 Glycosyl hydrolases family 43 NYR48_RS18910 PF16369 C-terminal lipocalin-like domain NYR48_RS18915 PF09021 HutP NYR48_RS18920 PF00221 Aromatic amino acid lyase NYR48_RS18925 PF17391 Urocanase N-terminal domain NYR48_RS18925 PF17392 Urocanase C-terminal domain NYR48_RS18925 PF01175 Urocanase Rossmann-like domain NYR48_RS18930 PF01979 Amidohydrolase family NYR48_RS18935 PF00491 Arginase family NYR48_RS18940 PF00324 Amino acid permease NYR48_RS18945 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NYR48_RS18945 PF00591 Glycosyl transferase family, a/b domain NYR48_RS18945 PF02885 Glycosyl transferase family, helical bundle domain NYR48_RS18950 PF07662 Na+ dependent nucleoside transporter C-terminus NYR48_RS18950 PF01773 Na+ dependent nucleoside transporter N-terminus NYR48_RS18955 PF01791 DeoC/LacD family aldolase NYR48_RS18960 PF04198 Putative sugar-binding domain NYR48_RS18975 PF11631 Protein of unknown function (DUF3255) NYR48_RS18995 PF01497 Periplasmic binding protein NYR48_RS19000 PF06486 Protein of unknown function (DUF1093) NYR48_RS19005 PF02687 FtsX-like permease family NYR48_RS19010 PF00005 ABC transporter NYR48_RS19015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS19020 PF00072 Response regulator receiver domain NYR48_RS19020 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS19025 PF01116 Fructose-bisphosphate aldolase class-II NYR48_RS19030 PF01261 Xylose isomerase-like TIM barrel NYR48_RS19035 PF01261 Xylose isomerase-like TIM barrel NYR48_RS19040 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NYR48_RS19040 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NYR48_RS19045 PF07690 Major Facilitator Superfamily NYR48_RS19050 PF01261 Xylose isomerase-like TIM barrel NYR48_RS19055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NYR48_RS19055 PF00205 Thiamine pyrophosphate enzyme, central domain NYR48_RS19055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NYR48_RS19060 PF00294 pfkB family carbohydrate kinase NYR48_RS19065 PF04962 KduI/IolB family NYR48_RS19070 PF00171 Aldehyde dehydrogenase family NYR48_RS19075 PF08220 DeoR-like helix-turn-helix domain NYR48_RS19075 PF00455 DeoR C terminal sensor domain NYR48_RS19080 PF00248 Aldo/keto reductase family NYR48_RS19085 PF00083 Sugar (and other) transporter NYR48_RS19090 PF00183 Hsp90 protein NYR48_RS19090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS19105 PF00196 Bacterial regulatory proteins, luxR family NYR48_RS19105 PF00072 Response regulator receiver domain NYR48_RS19110 PF07730 Histidine kinase NYR48_RS19115 PF00487 Fatty acid desaturase NYR48_RS19120 PF00440 Bacterial regulatory proteins, tetR family NYR48_RS19125 PF00171 Aldehyde dehydrogenase family NYR48_RS19130 PF13570 PQQ-like domain NYR48_RS19130 PF13360 PQQ-like domain NYR48_RS19130 PF01011 PQQ enzyme repeat NYR48_RS19135 PF17369 Family of unknown function (DUF5391) NYR48_RS19145 PF07690 Major Facilitator Superfamily NYR48_RS19150 PF06271 RDD family NYR48_RS19160 PF01435 Peptidase family M48 NYR48_RS19165 PF04471 Restriction endonuclease NYR48_RS19165 PF14338 Mrr N-terminal domain NYR48_RS19170 PF00578 AhpC/TSA family NYR48_RS19175 PF13192 Thioredoxin domain NYR48_RS19175 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS19180 PF13784 Fic/DOC family N-terminal NYR48_RS19180 PF02661 Fic/DOC family NYR48_RS19185 PF00324 Amino acid permease NYR48_RS19190 PF06874 Firmicute fructose-1,6-bisphosphatase NYR48_RS19195 PF00111 2Fe-2S iron-sulfur cluster binding domain NYR48_RS19195 PF01799 [2Fe-2S] binding domain NYR48_RS19205 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NYR48_RS19205 PF00111 2Fe-2S iron-sulfur cluster binding domain NYR48_RS19205 PF01799 [2Fe-2S] binding domain NYR48_RS19205 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NYR48_RS19210 PF12804 MobA-like NTP transferase domain NYR48_RS19215 PF02625 XdhC and CoxI family NYR48_RS19215 PF13478 XdhC Rossmann domain NYR48_RS19225 PF11867 Domain of unknown function (DUF3387) NYR48_RS19225 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NYR48_RS19225 PF18766 SWI2/SNF2 ATPase NYR48_RS19245 PF12826 Helix-hairpin-helix motif NYR48_RS19245 PF04002 RadC-like JAB domain NYR48_RS19250 PF07508 Recombinase NYR48_RS19250 PF00239 Resolvase, N terminal domain NYR48_RS19250 PF13408 Recombinase zinc beta ribbon domain NYR48_RS19265 PF13361 UvrD-like helicase C-terminal domain NYR48_RS19265 PF00580 UvrD/REP helicase N-terminal domain NYR48_RS19270 PF02463 RecF/RecN/SMC N terminal domain NYR48_RS19275 PF02590 Predicted SPOUT methyltransferase NYR48_RS19280 PF14116 YyzF-like protein NYR48_RS19300 PF00248 Aldo/keto reductase family NYR48_RS19305 PF00583 Acetyltransferase (GNAT) family NYR48_RS19315 PF18801 response regulator aspartate phosphatase H, N terminal NYR48_RS19320 PF00491 Arginase family NYR48_RS19325 PF00324 Amino acid permease NYR48_RS19330 PF00202 Aminotransferase class-III NYR48_RS19335 PF13630 SdpI/YhfL protein family NYR48_RS19335 PF07853 Protein of unknown function (DUF1648) NYR48_RS19340 PF01022 Bacterial regulatory protein, arsR family NYR48_RS19345 PF02954 Bacterial regulatory protein, Fis family NYR48_RS19345 PF00158 Sigma-54 interaction domain NYR48_RS19345 PF13426 PAS domain NYR48_RS19355 PF00005 ABC transporter NYR48_RS19355 PF16326 ABC transporter C-terminal domain NYR48_RS19355 PF12848 ABC transporter NYR48_RS19370 PF00899 ThiF family NYR48_RS19375 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS19375 PF00672 HAMP domain NYR48_RS19375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS19380 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS19380 PF00072 Response regulator receiver domain NYR48_RS19390 PF13180 PDZ domain NYR48_RS19395 PF00753 Metallo-beta-lactamase superfamily NYR48_RS19400 PF09648 YycH protein NYR48_RS19405 PF07435 YycH protein NYR48_RS19410 PF00512 His Kinase A (phospho-acceptor) domain NYR48_RS19410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR48_RS19410 PF00672 HAMP domain NYR48_RS19410 PF13426 PAS domain NYR48_RS19415 PF00486 Transcriptional regulatory protein, C terminal NYR48_RS19415 PF00072 Response regulator receiver domain NYR48_RS19440 PF00709 Adenylosuccinate synthetase NYR48_RS19445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR48_RS19450 PF03796 DnaB-like helicase C terminal domain NYR48_RS19450 PF00772 DnaB-like helicase N terminal domain NYR48_RS19455 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) NYR48_RS19465 PF14174 YycC-like protein NYR48_RS19470 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NYR48_RS19475 PF13439 Glycosyltransferase Family 4 NYR48_RS19475 PF00534 Glycosyl transferases group 1 NYR48_RS19485 PF02222 ATP-grasp domain NYR48_RS19490 PF13439 Glycosyltransferase Family 4 NYR48_RS19490 PF00534 Glycosyl transferases group 1 NYR48_RS19505 PF03948 Ribosomal protein L9, C-terminal domain NYR48_RS19505 PF01281 Ribosomal protein L9, N-terminal domain NYR48_RS19510 PF02272 DHHA1 domain NYR48_RS19510 PF01368 DHH family NYR48_RS19515 PF09991 Predicted membrane protein (DUF2232) NYR48_RS19525 PF07875 Coat F domain NYR48_RS19530 PF01638 HxlR-like helix-turn-helix NYR48_RS19535 PF02833 DHHA2 domain NYR48_RS19535 PF01368 DHH family NYR48_RS19545 PF00892 EamA-like transporter family NYR48_RS19550 PF02435 Levansucrase/Invertase NYR48_RS19555 PF00251 Glycosyl hydrolases family 32 N-terminal domain NYR48_RS19555 PF08244 Glycosyl hydrolases family 32 C terminal NYR48_RS19560 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS19560 PF07729 FCD domain NYR48_RS19565 PF05163 DinB family NYR48_RS19570 PF07690 Major Facilitator Superfamily NYR48_RS19575 PF03466 LysR substrate binding domain NYR48_RS19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS19580 PF01810 LysE type translocator NYR48_RS19585 PF07690 Major Facilitator Superfamily NYR48_RS19590 PF03466 LysR substrate binding domain NYR48_RS19590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS19600 PF00881 Nitroreductase family NYR48_RS19605 PF01047 MarR family NYR48_RS19610 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR48_RS19610 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NYR48_RS19615 PF01047 MarR family NYR48_RS19620 PF13673 Acetyltransferase (GNAT) domain NYR48_RS19630 PF02627 Carboxymuconolactone decarboxylase family NYR48_RS19635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NYR48_RS19635 PF03466 LysR substrate binding domain NYR48_RS19645 PF13419 Haloacid dehalogenase-like hydrolase NYR48_RS19650 PF00293 NUDIX domain NYR48_RS19650 PF13344 Haloacid dehalogenase-like hydrolase NYR48_RS19655 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR48_RS19665 PF00155 Aminotransferase class I and II NYR48_RS19665 PF00392 Bacterial regulatory proteins, gntR family NYR48_RS19670 PF00892 EamA-like transporter family NYR48_RS19675 PF03190 Protein of unknown function, DUF255 NYR48_RS19680 PF02517 CPBP intramembrane metalloprotease NYR48_RS19685 PF00083 Sugar (and other) transporter NYR48_RS19690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR48_RS19695 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NYR48_RS19695 PF00356 Bacterial regulatory proteins, lacI family NYR48_RS19700 PF03372 Endonuclease/Exonuclease/phosphatase family NYR48_RS19705 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NYR48_RS19705 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NYR48_RS19710 PF02805 Metal binding domain of Ada NYR48_RS19710 PF12833 Helix-turn-helix domain NYR48_RS19715 PF01084 Ribosomal protein S18 NYR48_RS19720 PF00436 Single-strand binding protein family NYR48_RS19725 PF01250 Ribosomal protein S6 NYR48_RS19730 PF06071 Protein of unknown function (DUF933) NYR48_RS19730 PF01926 50S ribosome-binding GTPase NYR48_RS19735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NYR48_RS19735 PF00384 Molybdopterin oxidoreductase NYR48_RS19735 PF01568 Molydopterin dinucleotide binding domain NYR48_RS19740 PF06107 Bacterial protein of unknown function (DUF951) NYR48_RS19755 PF06866 Protein of unknown function (DUF1256) NYR48_RS19760 PF17762 HTH domain found in ParB protein NYR48_RS19760 PF02195 ParB-like nuclease domain NYR48_RS19765 PF13614 AAA domain NYR48_RS19770 PF17762 HTH domain found in ParB protein NYR48_RS19770 PF02195 ParB-like nuclease domain NYR48_RS19775 PF02527 rRNA small subunit methyltransferase G NYR48_RS19780 PF01134 Glucose inhibited division protein A NYR48_RS19780 PF13932 GidA associated domain NYR48_RS19785 PF01926 50S ribosome-binding GTPase NYR48_RS19785 PF12631 MnmE helical domain NYR48_RS19785 PF10396 GTP-binding protein TrmE N-terminus NYR48_RS19790 PF14804 Jag N-terminus NYR48_RS19790 PF01424 R3H domain NYR48_RS19795 PF02096 60Kd inner membrane protein NYR48_RS19800 PF00825 Ribonuclease P NYR48_RS19805 PF00468 Ribosomal protein L34