locus-tag	class	description
CLI98_RS00010	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CLI98_RS00015	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CLI98_RS00020	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CLI98_RS00025	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CLI98_RS00035	COG0456	acetyltransferase
CLI98_RS00040	COG0463	Glycosyl transferase, family 2
CLI98_RS00055	COG4641	Protein conserved in bacteria
CLI98_RS00065	COG1086	Polysaccharide biosynthesis protein
CLI98_RS00080	COG1846	Transcriptional regulator
CLI98_RS00085	COG4698	Protein conserved in bacteria
CLI98_RS00090	COG2755	lipolytic protein G-D-S-L family
CLI98_RS00095	COG1999	signal sequence binding
CLI98_RS00105	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CLI98_RS00110	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CLI98_RS00115	COG1272	protein, Hemolysin III
CLI98_RS00120	COG0204	Acyl-transferase
CLI98_RS00125	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CLI98_RS00140	COG2521	methyltransferase
CLI98_RS00140	COG2136	Putative SAM-dependent methyltransferase
CLI98_RS00155	COG1413	lyase activity
CLI98_RS00160	COG1418	mRNA catabolic process
CLI98_RS00165	COG0386	Belongs to the glutathione peroxidase family
CLI98_RS00175	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CLI98_RS00180	COG1278	Cold shock
CLI98_RS00200	COG0328	RNA-DNA hybrid ribonuclease activity
CLI98_RS00205	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CLI98_RS00210	COG0328	RNA-DNA hybrid ribonuclease activity
CLI98_RS00220	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLI98_RS00235	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CLI98_RS00245	COG1755	Isoprenylcysteine carboxyl methyltransferase
CLI98_RS00250	COG3424	synthase
CLI98_RS00275	COG1335	isochorismatase
CLI98_RS00290	COG2233	PERMEase
CLI98_RS00300	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
CLI98_RS00305	COG1199	ATP-dependent helicase activity
CLI98_RS00320	COG0116	Belongs to the methyltransferase superfamily
CLI98_RS00345	COG3359	exonuclease
CLI98_RS00350	COG1205	dead DEAH box helicase
CLI98_RS00350	COG1111	helicase
CLI98_RS00355	COG2190	(PTS) system
CLI98_RS00360	COG0071	Belongs to the small heat shock protein (HSP20) family
CLI98_RS00400	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CLI98_RS00400	COG4499	WXG100 protein secretion system (Wss), protein YukC
CLI98_RS00410	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CLI98_RS00415	COG3935	DnaD domain protein
CLI98_RS00425	COG0436	Aminotransferase
CLI98_RS00430	COG5353	protein conserved in bacteria
CLI98_RS00440	COG1199	ATP-dependent helicase activity
CLI98_RS00440	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CLI98_RS00470	COG0438	transferase activity, transferring glycosyl groups
CLI98_RS00475	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CLI98_RS00490	COG1694	Mazg nucleotide pyrophosphohydrolase
CLI98_RS00495	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLI98_RS00500	COG2140	Oxalate decarboxylase
CLI98_RS00510	COG4347	Protein of unknown function (DUF1405)
CLI98_RS00515	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CLI98_RS00515	COG2010	Cytochrome c
CLI98_RS00520	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CLI98_RS00525	COG0723	plastoquinol--plastocyanin reductase activity
CLI98_RS00540	COG0457	Tetratricopeptide repeat
CLI98_RS00550	COG0287	Prephenate dehydrogenase
CLI98_RS00585	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CLI98_RS00590	COG4401	Chorismate mutase type I
CLI98_RS00605	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CLI98_RS00610	COG0105	UTP biosynthetic process
CLI98_RS00615	COG0142	geranyltranstransferase activity
CLI98_RS00625	COG0142	geranyltranstransferase activity
CLI98_RS00640	COG0776	regulation of translation
CLI98_RS00645	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CLI98_RS00685	COG0539	negative regulation of cytoplasmic translation
CLI98_RS00700	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
CLI98_RS00705	COG2959	enzyme of heme biosynthesis
CLI98_RS00710	COG3409	Peptidoglycan-binding domain 1 protein
CLI98_RS00710	COG3773	Cell wall hydrolase
CLI98_RS00715	COG2339	peptidase activity
CLI98_RS00720	COG0492	ferredoxin-NADP+ reductase activity
CLI98_RS00725	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CLI98_RS00730	COG4862	establishment of competence for transformation
CLI98_RS00735	COG1408	metallophosphoesterase
CLI98_RS00745	COG1388	LysM domain
CLI98_RS00750	COG1266	CAAX protease self-immunity
CLI98_RS00755	COG0514	ATP-dependent DNA helicase (RecQ)
CLI98_RS00760	COG4955	Helix-turn-helix domain
CLI98_RS00765	COG1141	Ferredoxin
CLI98_RS00770	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
CLI98_RS00775	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CLI98_RS00785	COG1595	DNA-templated transcription, initiation
CLI98_RS00790	COG5002	protein histidine kinase activity
CLI98_RS00795	COG0745	RESPONSE REGULATOR receiver
CLI98_RS00800	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CLI98_RS00805	COG1333	cytochrome c biogenesis protein
CLI98_RS00810	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI98_RS00815	COG1187	pseudouridine synthase activity
CLI98_RS00820	COG0700	Nucleoside recognition
CLI98_RS00825	COG2715	membrane protein required for spore maturation
CLI98_RS00830	COG1686	Belongs to the peptidase S11 family
CLI98_RS00855	COG1547	Domain of unknown function (DUF309)
CLI98_RS00865	COG0456	acetyltransferase
CLI98_RS00880	COG0307	riboflavin synthase, alpha
CLI98_RS00885	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CLI98_RS00885	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CLI98_RS00895	COG0681	Belongs to the peptidase S26 family
CLI98_RS00905	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CLI98_RS00910	COG4086	secreted protein
CLI98_RS00915	COG0019	diaminopimelate decarboxylase activity
CLI98_RS00920	COG0697	spore germination
CLI98_RS00935	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CLI98_RS00955	COG1191	sigma factor activity
CLI98_RS00965	COG1366	Belongs to the anti-sigma-factor antagonist family
CLI98_RS00970	COG1686	Belongs to the peptidase S11 family
CLI98_RS00975	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CLI98_RS00980	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CLI98_RS00985	COG4974	Belongs to the 'phage' integrase family
CLI98_RS00995	COG0735	belongs to the Fur family
CLI98_RS01000	COG1300	Membrane
CLI98_RS01015	COG0281	malic enzyme
CLI98_RS01020	COG1757	Na H antiporter
CLI98_RS01025	COG1027	Aspartate ammonia-lyase
CLI98_RS01030	COG0252	asparaginase activity
CLI98_RS01035	COG1396	sequence-specific DNA binding
CLI98_RS01040	COG1379	DNA repair
CLI98_RS01045	COG0494	nUDIX hydrolase
CLI98_RS01055	COG0667	Aldo Keto reductase
CLI98_RS01065	COG1073	alpha beta
CLI98_RS01075	COG4918	Iron-sulphur cluster biosynthesis
CLI98_RS01080	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CLI98_RS01080	COG0456	acetyltransferase
CLI98_RS01085	COG2329	Antibiotic biosynthesis monooxygenase
CLI98_RS01090	COG0456	acetyltransferase
CLI98_RS01095	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CLI98_RS01110	COG0628	permease
CLI98_RS01120	COG0346	lactoylglutathione lyase activity
CLI98_RS01130	COG3048	D-serine ammonia-lyase activity
CLI98_RS01135	COG0300	oxidoreductase activity
CLI98_RS01140	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLI98_RS01145	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CLI98_RS01150	COG1024	Enoyl-CoA hydratase
CLI98_RS01155	COG3425	synthase
CLI98_RS01160	COG2124	cytochrome p450
CLI98_RS01165	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLI98_RS01165	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS01165	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS01165	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS01165	COG3321	synthase
CLI98_RS01170	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLI98_RS01170	COG3321	synthase
CLI98_RS01170	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS01170	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS01170	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS01175	COG0318	PFAM AMP-dependent synthetase and ligase
CLI98_RS01175	COG0300	oxidoreductase activity
CLI98_RS01175	COG3321	synthase
CLI98_RS01175	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS01175	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS01180	COG3321	synthase
CLI98_RS01180	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS01180	COG0318	PFAM AMP-dependent synthetase and ligase
CLI98_RS01180	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS01180	COG0300	oxidoreductase activity
CLI98_RS01185	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS01185	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLI98_RS01185	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS01185	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS01185	COG3321	synthase
CLI98_RS01190	COG3321	synthase
CLI98_RS01190	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS01190	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS01190	COG0318	PFAM AMP-dependent synthetase and ligase
CLI98_RS01190	COG0300	oxidoreductase activity
CLI98_RS01195	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS01195	COG3321	synthase
CLI98_RS01195	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS01195	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLI98_RS01195	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS01200	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS01205	COG0318	PFAM AMP-dependent synthetase and ligase
CLI98_RS01220	COG2070	2-Nitropropane dioxygenase
CLI98_RS01220	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CLI98_RS01230	COG0250	Participates in transcription elongation, termination and antitermination
CLI98_RS01255	COG0596	Alpha beta hydrolase
CLI98_RS01270	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CLI98_RS01275	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CLI98_RS01290	COG0706	membrane insertase activity
CLI98_RS01295	COG2195	Cleaves the N-terminal amino acid of tripeptides
CLI98_RS01300	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CLI98_RS01305	COG0346	lactoylglutathione lyase activity
CLI98_RS01310	COG1376	ErfK ybiS ycfS ynhG family protein
CLI98_RS01315	COG4129	membrane
CLI98_RS01320	COG1126	abc transporter atp-binding protein
CLI98_RS01325	COG0765	amino acid transport
CLI98_RS01330	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLI98_RS01340	COG1597	lipid kinase activity
CLI98_RS01345	COG0508	dehydrogenase complex catalyzes the overall conversion of
CLI98_RS01350	COG0022	dehydrogenase e1 component
CLI98_RS01355	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CLI98_RS01360	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CLI98_RS01365	COG3426	butyrate kinase activity
CLI98_RS01370	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CLI98_RS01375	COG0280	phosphate acetyltransferase
CLI98_RS01380	COG3290	protein histidine kinase activity
CLI98_RS01380	COG3829	transcription factor binding
CLI98_RS01390	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
CLI98_RS01395	COG2079	MmgE PrpD family protein
CLI98_RS01400	COG0372	Belongs to the citrate synthase family
CLI98_RS01405	COG1960	acyl-CoA dehydrogenase activity
CLI98_RS01410	COG1250	3-hydroxyacyl-CoA dehydrogenase
CLI98_RS01415	COG0183	Belongs to the thiolase family
CLI98_RS01420	COG0584	glycerophosphoryl diester phosphodiesterase
CLI98_RS01425	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLI98_RS01445	COG1902	pentaerythritol trinitrate reductase activity
CLI98_RS01460	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLI98_RS01465	COG0745	RESPONSE REGULATOR receiver
CLI98_RS01470	COG0750	zinc metalloprotease
CLI98_RS01475	COG0497	DNA recombination
CLI98_RS01485	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CLI98_RS01495	COG0142	geranyltranstransferase activity
CLI98_RS01505	COG1570	exodeoxyribonuclease VII activity
CLI98_RS01520	COG1302	Protein conserved in bacteria
CLI98_RS01525	COG0439	Biotin carboxylase
CLI98_RS01530	COG0511	ligase activity, forming carbon-carbon bonds
CLI98_RS01570	COG3854	ATPases associated with a variety of cellular activities
CLI98_RS01585	COG0006	proline dipeptidase activity
CLI98_RS01595	COG3872	metal-dependent enzyme
CLI98_RS01605	COG1752	Esterase of the alpha-beta hydrolase superfamily
CLI98_RS01620	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CLI98_RS01640	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CLI98_RS01655	COG1396	sequence-specific DNA binding
CLI98_RS01665	COG0681	Belongs to the peptidase S26 family
CLI98_RS01690	COG4940	Competence protein ComGF
CLI98_RS01700	COG4970	Tfp pilus assembly protein FimT
CLI98_RS01705	COG4537	Required for transformation and DNA binding
CLI98_RS01710	COG1459	type II secretion system
CLI98_RS01715	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CLI98_RS01720	COG0598	Magnesium transport protein CorA
CLI98_RS01725	COG1253	flavin adenine dinucleotide binding
CLI98_RS01730	COG1366	Belongs to the anti-sigma-factor antagonist family
CLI98_RS01740	COG1393	Belongs to the ArsC family
CLI98_RS01750	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLI98_RS01760	COG0011	TIGRFAM Protein of
CLI98_RS01770	COG2866	Carboxypeptidase
CLI98_RS01775	COG1940	carbohydrate kinase activity
CLI98_RS01780	COG4483	Protein conserved in bacteria
CLI98_RS01785	COG1757	Na H antiporter
CLI98_RS01795	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CLI98_RS01810	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CLI98_RS01815	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CLI98_RS01820	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CLI98_RS01825	COG0581	inorganic phosphate transmembrane transporter activity
CLI98_RS01830	COG0573	inorganic phosphate transmembrane transporter activity
CLI98_RS01835	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CLI98_RS01840	COG0768	penicillin binding
CLI98_RS01845	COG0477	Major facilitator Superfamily
CLI98_RS01850	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CLI98_RS01855	COG2839	Protein conserved in bacteria
CLI98_RS01860	COG5521	maltodextrose utilization protein MalA
CLI98_RS01865	COG1388	LysM domain
CLI98_RS01875	COG4709	membrane
CLI98_RS01880	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
CLI98_RS01885	COG0735	belongs to the Fur family
CLI98_RS01890	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLI98_RS01905	COG0513	Belongs to the DEAD box helicase family
CLI98_RS01920	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CLI98_RS01925	COG2384	SAM-dependent methyltransferase
CLI98_RS01930	COG2010	Cytochrome c
CLI98_RS01935	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CLI98_RS01940	COG0358	DNA primase activity
CLI98_RS01955	COG0517	IMP dehydrogenase activity
CLI98_RS01960	COG0751	glycine-tRNA ligase activity
CLI98_RS01980	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CLI98_RS01985	COG0295	cytidine deaminase activity
CLI98_RS01990	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CLI98_RS02000	COG1480	7TM receptor with intracellular HD hydrolase
CLI98_RS02005	COG1702	phosphate starvation-inducible protein PhoH
CLI98_RS02010	COG0561	phosphatase activity
CLI98_RS02025	COG4864	UPF0365 protein
CLI98_RS02030	COG1030	water channel activity
CLI98_RS02035	COG1610	YqeY-like protein
CLI98_RS02045	COG1283	sodium-dependent phosphate transmembrane transporter activity
CLI98_RS02050	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CLI98_RS02055	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CLI98_RS02085	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CLI98_RS02100	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLI98_RS02115	COG1466	dna polymerase III delta subunit
CLI98_RS02125	COG0658	competence protein
CLI98_RS02125	COG2333	competence protein COMEC
CLI98_RS02130	COG2131	deaminase
CLI98_RS02135	COG1596	polysaccharide export
CLI98_RS02135	COG1555	photosystem II stabilization
CLI98_RS02140	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CLI98_RS02145	COG2226	methyltransferase
CLI98_RS02150	COG0799	negative regulation of ribosome biogenesis
CLI98_RS02155	COG1713	HD superfamily hydrolase involved in NAD metabolism
CLI98_RS02165	COG1534	Rna-binding protein
CLI98_RS02170	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CLI98_RS02175	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CLI98_RS02180	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
CLI98_RS02190	COG2755	lipolytic protein G-D-S-L family
CLI98_RS02200	COG0398	Pfam SNARE associated Golgi protein
CLI98_RS02235	COG3708	Transcriptional regulator
CLI98_RS02235	COG2207	Transcriptional regulator
CLI98_RS02240	COG0583	DNA-binding transcription factor activity
CLI98_RS02255	COG0642	Histidine kinase
CLI98_RS02255	COG5002	protein histidine kinase activity
CLI98_RS02260	COG0745	RESPONSE REGULATOR receiver
CLI98_RS02265	COG2311	Membrane
CLI98_RS02270	COG0454	-acetyltransferase
CLI98_RS02285	COG2814	Major facilitator Superfamily
CLI98_RS02300	COG5444	nuclease activity
CLI98_RS02340	COG0456	acetyltransferase
CLI98_RS02345	COG2318	DinB family
CLI98_RS02355	COG0561	phosphatase activity
CLI98_RS02360	COG0561	phosphatase activity
CLI98_RS02370	COG1482	cell wall glycoprotein biosynthetic process
CLI98_RS02375	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI98_RS02375	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLI98_RS02375	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLI98_RS02380	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI98_RS02380	COG3711	transcriptional antiterminator
CLI98_RS02390	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CLI98_RS02395	COG0583	DNA-binding transcription factor activity
CLI98_RS02400	COG2814	Major facilitator Superfamily
CLI98_RS02405	COG2124	cytochrome p450
CLI98_RS02405	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CLI98_RS02410	COG1309	transcriptional regulator
CLI98_RS02415	COG2226	methyltransferase
CLI98_RS02430	COG2116	formate transmembrane transporter activity
CLI98_RS02435	COG5609	conserved protein (DUF2294)
CLI98_RS02440	COG3383	formate dehydrogenase (NAD+) activity
CLI98_RS02445	COG2427	Protein of unknown function (DUF1641)
CLI98_RS02455	COG0626	cystathionine gamma-synthase activity
CLI98_RS02460	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CLI98_RS02485	COG0768	penicillin binding
CLI98_RS02500	COG0826	peptidase U32
CLI98_RS02505	COG0826	peptidase U32
CLI98_RS02510	COG4122	O-methyltransferase activity
CLI98_RS02515	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CLI98_RS02530	COG4472	Bacterial protein of unknown function (DUF965)
CLI98_RS02540	COG0628	permease
CLI98_RS02545	COG1126	abc transporter atp-binding protein
CLI98_RS02550	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLI98_RS02555	COG0765	amino acid transport
CLI98_RS02560	COG0765	amino acid transport
CLI98_RS02575	COG3881	PFAM PRC-barrel domain
CLI98_RS02580	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CLI98_RS02585	COG0457	Tetratricopeptide repeat
CLI98_RS02595	COG1104	cysteine desulfurase activity
CLI98_RS02600	COG1959	2 iron, 2 sulfur cluster binding
CLI98_RS02605	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CLI98_RS02610	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CLI98_RS02635	COG3103	Sh3 type 3 domain protein
CLI98_RS02635	COG4991	sh3 domain protein
CLI98_RS02635	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLI98_RS02645	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CLI98_RS02655	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CLI98_RS02655	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CLI98_RS02660	COG5416	Lipopolysaccharide assembly protein A domain
CLI98_RS02665	COG0490	domain, Protein
CLI98_RS02670	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CLI98_RS02670	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CLI98_RS02680	COG2244	polysaccharide biosynthetic process
CLI98_RS02685	COG2323	membrane
CLI98_RS02695	COG1862	Preprotein translocase
CLI98_RS02740	COG1388	LysM domain
CLI98_RS02750	COG0157	Belongs to the NadC ModD family
CLI98_RS02755	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CLI98_RS02760	COG1104	cysteine desulfurase activity
CLI98_RS02765	COG1827	regulation of RNA biosynthetic process
CLI98_RS02770	COG0077	Prephenate dehydratase
CLI98_RS02785	COG3290	protein histidine kinase activity
CLI98_RS02790	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CLI98_RS02795	COG2868	ribosomal protein
CLI98_RS02805	COG1994	Peptidase M50
CLI98_RS02810	COG0739	heme binding
CLI98_RS02815	COG2894	cell division
CLI98_RS02825	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CLI98_RS02835	COG1077	Cell shape determining protein MreB Mrl
CLI98_RS02855	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CLI98_RS02860	COG0285	dihydrofolate synthase activity
CLI98_RS02865	COG0525	valine-tRNA ligase activity
CLI98_RS02875	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CLI98_RS02880	COG1388	LysM domain
CLI98_RS02890	COG0113	porphobilinogen synthase activity
CLI98_RS02895	COG1587	Uroporphyrinogen-III synthase
CLI98_RS02905	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CLI98_RS02925	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CLI98_RS02930	COG0470	DNA polymerase III
CLI98_RS02930	COG1067	ATP-dependent peptidase activity
CLI98_RS02945	COG0457	Tetratricopeptide repeat
CLI98_RS02945	COG1477	protein flavinylation
CLI98_RS02960	COG0473	3-isopropylmalate dehydrogenase activity
CLI98_RS02975	COG0440	acetolactate synthase activity
CLI98_RS02980	COG0028	Belongs to the TPP enzyme family
CLI98_RS03010	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
CLI98_RS03035	COG0622	Phosphoesterase
CLI98_RS03040	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CLI98_RS03050	COG5401	PFAM Sporulation and spore germination
CLI98_RS03060	COG1846	Transcriptional regulator
CLI98_RS03065	COG2197	response regulator
CLI98_RS03070	COG0824	Thioesterase
CLI98_RS03075	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CLI98_RS03080	COG1053	succinate dehydrogenase
CLI98_RS03085	COG2009	succinate dehydrogenase
CLI98_RS03090	COG1719	4-vinyl reductase, 4VR
CLI98_RS03095	COG0527	aspartate kinase activity
CLI98_RS03110	COG3118	belongs to the thioredoxin family
CLI98_RS03115	COG3534	alpha-L-arabinofuranosidase
CLI98_RS03120	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CLI98_RS03125	COG2086	electron transfer activity
CLI98_RS03130	COG1024	Enoyl-CoA hydratase
CLI98_RS03135	COG1309	transcriptional regulator
CLI98_RS03140	COG0318	PFAM AMP-dependent synthetase and ligase
CLI98_RS03150	COG3766	membrane
CLI98_RS03160	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CLI98_RS03160	COG1796	DNA polymerase
CLI98_RS03165	COG1286	toxin biosynthetic process
CLI98_RS03180	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLI98_RS03180	COG0072	phenylalanine-tRNA ligase activity
CLI98_RS03185	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CLI98_RS03190	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLI98_RS03200	COG3835	regulator
CLI98_RS03205	COG0277	FAD linked oxidase domain protein
CLI98_RS03210	COG0247	lactate metabolic process
CLI98_RS03215	COG1966	Carbon starvation protein
CLI98_RS03220	COG3534	alpha-L-arabinofuranosidase
CLI98_RS03225	COG0395	ABC-type sugar transport system, permease component
CLI98_RS03230	COG1175	transmembrane transport
CLI98_RS03235	COG1653	transport
CLI98_RS03245	COG0647	UMP catabolic process
CLI98_RS03250	COG0235	Class ii aldolase
CLI98_RS03255	COG1069	ribulokinase activity
CLI98_RS03260	COG2160	L-arabinose isomerase activity
CLI98_RS03265	COG3507	Belongs to the glycosyl hydrolase 43 family
CLI98_RS03270	COG1363	Peptidase, m42
CLI98_RS03280	COG3326	Membrane
CLI98_RS03295	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CLI98_RS03300	COG1346	cytolysis
CLI98_RS03305	COG1380	Effector of murein hydrolase LrgA
CLI98_RS03310	COG3279	Response regulator of the LytR AlgR family
CLI98_RS03315	COG3275	phosphorelay sensor kinase activity
CLI98_RS03325	COG1011	Hydrolase
CLI98_RS03340	COG0398	Pfam SNARE associated Golgi protein
CLI98_RS03345	COG1484	DNA-dependent DNA replication
CLI98_RS03350	COG3611	Membrane attachment protein
CLI98_RS03365	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CLI98_RS03370	COG1733	regulation of RNA biosynthetic process
CLI98_RS03375	COG2814	Major facilitator Superfamily
CLI98_RS03380	COG0656	L-ascorbic acid biosynthetic process
CLI98_RS03385	COG0237	dephospho-CoA kinase activity
CLI98_RS03390	COG1971	Probably functions as a manganese efflux pump
CLI98_RS03395	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CLI98_RS03400	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLI98_RS03400	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLI98_RS03405	COG5002	protein histidine kinase activity
CLI98_RS03410	COG0745	RESPONSE REGULATOR receiver
CLI98_RS03420	COG0538	isocitrate dehydrogenase activity
CLI98_RS03425	COG0372	Belongs to the citrate synthase family
CLI98_RS03430	COG0457	Tetratricopeptide repeat
CLI98_RS03460	COG0628	permease
CLI98_RS03465	COG3030	protein affecting phage T7 exclusion by the F plasmid
CLI98_RS03470	COG0469	pyruvate kinase activity
CLI98_RS03490	COG0281	malic enzyme
CLI98_RS03495	COG0587	DNA-directed DNA polymerase activity
CLI98_RS03515	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CLI98_RS03525	COG4109	DRTGG domain
CLI98_RS03535	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS03555	COG0521	Mo-molybdopterin cofactor biosynthetic process
CLI98_RS03565	COG0827	DNA restriction-modification system
CLI98_RS03570	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CLI98_RS03575	COG3874	Sporulation protein YtfJ
CLI98_RS03585	COG1714	RDD family
CLI98_RS03590	COG0616	signal peptide processing
CLI98_RS03595	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CLI98_RS03600	COG1574	metal-dependent hydrolase with the TIM-barrel fold
CLI98_RS03605	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CLI98_RS03620	COG1104	cysteine desulfurase activity
CLI98_RS03625	COG1114	Component of the transport system for branched-chain amino acids
CLI98_RS03635	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CLI98_RS03640	COG1309	transcriptional regulator
CLI98_RS03645	COG1956	GAF domain-containing protein
CLI98_RS03650	COG2199	diguanylate cyclase activity
CLI98_RS03650	COG2203	Gaf domain
CLI98_RS03665	COG1012	belongs to the aldehyde dehydrogenase family
CLI98_RS03680	COG0305	Participates in initiation and elongation during chromosome replication
CLI98_RS03685	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CLI98_RS03685	COG1017	nitric oxide dioxygenase activity
CLI98_RS03695	COG0693	protein deglycase activity
CLI98_RS03710	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CLI98_RS03715	COG1378	Sugar-specific transcriptional regulator TrmB
CLI98_RS03740	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CLI98_RS03745	COG0454	-acetyltransferase
CLI98_RS03750	COG0517	IMP dehydrogenase activity
CLI98_RS03755	COG0123	including yeast histone deacetylase and acetoin utilization protein
CLI98_RS03760	COG1360	Flagellar Motor Protein
CLI98_RS03765	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CLI98_RS03770	COG1609	Transcriptional regulator
CLI98_RS03775	COG1605	Chorismate mutase
CLI98_RS03775	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
CLI98_RS03780	COG3118	belongs to the thioredoxin family
CLI98_RS03785	COG4980	gas vesicle protein
CLI98_RS03790	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
CLI98_RS03800	COG1674	ftsk spoiiie
CLI98_RS03805	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLI98_RS03815	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI98_RS03825	COG1363	Peptidase, m42
CLI98_RS03830	COG5584	Small secreted protein
CLI98_RS03835	COG0281	malic enzyme
CLI98_RS03840	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLI98_RS03855	COG0510	thiamine kinase activity
CLI98_RS03860	COG1597	lipid kinase activity
CLI98_RS03870	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
CLI98_RS03875	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CLI98_RS03880	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CLI98_RS03885	COG2252	PERMEase
CLI98_RS03890	COG4473	ABC transporter
CLI98_RS03895	COG1131	(ABC) transporter
CLI98_RS03900	COG1349	DNA-binding transcription factor activity
CLI98_RS03905	COG1187	pseudouridine synthase activity
CLI98_RS03910	COG2244	polysaccharide biosynthetic process
CLI98_RS03915	COG2081	HI0933 family
CLI98_RS03920	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CLI98_RS03930	COG1609	Transcriptional regulator
CLI98_RS03935	COG1653	transport
CLI98_RS03940	COG1175	transmembrane transport
CLI98_RS03945	COG0395	ABC-type sugar transport system, permease component
CLI98_RS03950	COG1486	melibiose metabolic process
CLI98_RS03960	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CLI98_RS03975	COG1366	Belongs to the anti-sigma-factor antagonist family
CLI98_RS03975	COG2202	Pas domain
CLI98_RS03980	COG2814	Major facilitator Superfamily
CLI98_RS03985	COG5522	Integral membrane protein (intg_mem_TP0381)
CLI98_RS03990	COG0577	efflux transmembrane transporter activity
CLI98_RS03995	COG1136	(ABC) transporter
CLI98_RS04000	COG2205	protein histidine kinase activity
CLI98_RS04005	COG0745	RESPONSE REGULATOR receiver
CLI98_RS04010	COG0577	efflux transmembrane transporter activity
CLI98_RS04015	COG1136	(ABC) transporter
CLI98_RS04035	COG1131	(ABC) transporter
CLI98_RS04040	COG1725	Transcriptional regulator
CLI98_RS04050	COG1242	4 iron, 4 sulfur cluster binding
CLI98_RS04055	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CLI98_RS04065	COG0584	glycerophosphoryl diester phosphodiesterase
CLI98_RS04075	COG2267	carboxylic ester hydrolase activity
CLI98_RS04080	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CLI98_RS04085	COG1113	amino acid transport
CLI98_RS04090	COG0367	asparagine synthase
CLI98_RS04110	COG1506	peptidase
CLI98_RS04115	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLI98_RS04120	COG1116	anion transmembrane transporter activity
CLI98_RS04125	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLI98_RS04130	COG0494	nUDIX hydrolase
CLI98_RS04135	COG4824	toxin secretion phage lysis holin
CLI98_RS04140	COG0783	Belongs to the Dps family
CLI98_RS04165	COG0288	reversible hydration of carbon dioxide
CLI98_RS04175	COG1271	oxidase subunit
CLI98_RS04180	COG1294	oxidase, subunit
CLI98_RS04190	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CLI98_RS04195	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CLI98_RS04195	COG1321	iron dependent repressor
CLI98_RS04200	COG1121	(ABC) transporter
CLI98_RS04205	COG0803	Belongs to the bacterial solute-binding protein 9 family
CLI98_RS04210	COG4948	Mandelate Racemase Muconate Lactonizing
CLI98_RS04220	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CLI98_RS04225	COG0596	Alpha beta hydrolase
CLI98_RS04235	COG1169	isochorismate synthase
CLI98_RS04240	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CLI98_RS04245	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
CLI98_RS04370	COG3859	Proton-coupled thiamine transporter YuaJ
CLI98_RS04375	COG2268	Band 7 protein
CLI98_RS04380	COG1585	Membrane protein implicated in regulation of membrane protease activity
CLI98_RS04385	COG2318	DinB family
CLI98_RS04395	COG1454	alcohol dehydrogenase
CLI98_RS04400	COG1012	belongs to the aldehyde dehydrogenase family
CLI98_RS04405	COG1510	regulation of RNA biosynthetic process
CLI98_RS04415	COG0569	domain protein
CLI98_RS04420	COG1705	Flagellar rod assembly protein muramidase FlgJ
CLI98_RS04425	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CLI98_RS04425	COG1017	nitric oxide dioxygenase activity
CLI98_RS04450	COG0628	permease
CLI98_RS04455	COG0673	inositol 2-dehydrogenase activity
CLI98_RS04460	COG0693	protein deglycase activity
CLI98_RS04465	COG0840	transmembrane signaling receptor activity
CLI98_RS04470	COG0840	transmembrane signaling receptor activity
CLI98_RS04475	COG0840	transmembrane signaling receptor activity
CLI98_RS04480	COG0840	transmembrane signaling receptor activity
CLI98_RS04495	COG2070	2-Nitropropane dioxygenase
CLI98_RS04500	COG0432	Pfam Uncharacterised protein family UPF0047
CLI98_RS04505	COG0366	Alpha amylase catalytic
CLI98_RS04510	COG1253	flavin adenine dinucleotide binding
CLI98_RS04515	COG2738	Putative neutral zinc metallopeptidase
CLI98_RS04530	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CLI98_RS04560	COG1335	isochorismatase
CLI98_RS04565	COG1979	alcohol dehydrogenase
CLI98_RS04570	COG1979	alcohol dehydrogenase
CLI98_RS04575	COG2155	Conserved Protein
CLI98_RS04580	COG1098	S1 RNA binding domain
CLI98_RS04585	COG0436	Aminotransferase
CLI98_RS04590	COG1522	sequence-specific DNA binding
CLI98_RS04595	COG2267	carboxylic ester hydrolase activity
CLI98_RS04605	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CLI98_RS04610	COG2205	protein histidine kinase activity
CLI98_RS04620	COG5018	Exonuclease
CLI98_RS04625	COG2814	Major facilitator Superfamily
CLI98_RS04630	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CLI98_RS04635	COG3011	Protein conserved in bacteria
CLI98_RS04645	COG3290	protein histidine kinase activity
CLI98_RS04650	COG4565	transcriptional regulatory protein
CLI98_RS04655	COG1744	ABC transporter substrate-binding protein PnrA-like
CLI98_RS04660	COG3845	ABC transporter
CLI98_RS04665	COG4603	Belongs to the binding-protein-dependent transport system permease family
CLI98_RS04670	COG1079	Belongs to the binding-protein-dependent transport system permease family
CLI98_RS04680	COG2111	Na H antiporter
CLI98_RS04680	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CLI98_RS04685	COG2111	Na H antiporter
CLI98_RS04690	COG1006	Multisubunit Na H antiporter MnhC subunit
CLI98_RS04695	COG0651	ATP synthesis coupled electron transport
CLI98_RS04700	COG1863	multisubunit Na H antiporter MnhE subunit
CLI98_RS04705	COG2212	antiporter activity
CLI98_RS04710	COG1320	monovalent cation:proton antiporter activity
CLI98_RS04715	COG2050	protein possibly involved in aromatic compounds catabolism
CLI98_RS04720	COG2197	response regulator
CLI98_RS04725	COG4585	Histidine kinase
CLI98_RS04735	COG0142	geranyltranstransferase activity
CLI98_RS04755	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CLI98_RS04760	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CLI98_RS04765	COG1335	isochorismatase
CLI98_RS04770	COG5506	Protein of unknown function (DUF1694)
CLI98_RS04785	COG0628	permease
CLI98_RS04795	COG1418	mRNA catabolic process
CLI98_RS04800	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS04810	COG1511	domain protein
CLI98_RS04815	COG0433	COG0433 Predicted ATPase
CLI98_RS04815	COG1674	ftsk spoiiie
CLI98_RS04820	COG4499	WXG100 protein secretion system (Wss), protein YukC
CLI98_RS04825	COG5417	Belongs to the EsaB family
CLI98_RS04830	COG4842	Belongs to the WXG100 family
CLI98_RS04835	COG2508	Transcriptional regulator
CLI98_RS04835	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
CLI98_RS04840	COG0686	Belongs to the AlaDH PNT family
CLI98_RS04845	COG5634	Uncharacterized conserved protein (DUF2278)
CLI98_RS04850	COG3251	PFAM MbtH domain protein
CLI98_RS04855	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS04860	COG1535	isochorismatase
CLI98_RS04860	COG3433	isochorismatase activity
CLI98_RS04865	COG1021	2,3-dihydroxybenzoate-AMP ligase
CLI98_RS04870	COG1169	isochorismate synthase
CLI98_RS04875	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS04880	COG2819	hydrolase of the alpha beta superfamily
CLI98_RS04885	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CLI98_RS04890	COG1268	BioY protein
CLI98_RS04895	COG2056	Na+-H+ antiporter family
CLI98_RS04905	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
CLI98_RS04910	COG3584	3D domain protein
CLI98_RS04920	COG1252	NADH dehydrogenase
CLI98_RS04950	COG1131	(ABC) transporter
CLI98_RS04970	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLI98_RS04975	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
CLI98_RS04980	COG0316	Belongs to the HesB IscA family
CLI98_RS04990	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CLI98_RS05000	COG1252	NADH dehydrogenase
CLI98_RS05005	COG4837	Protein of unknown function (DUF1462)
CLI98_RS05010	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
CLI98_RS05015	COG1506	peptidase
CLI98_RS05015	COG0823	Involved in the tonB-independent uptake of proteins
CLI98_RS05015	COG4946	Tricorn protease homolog
CLI98_RS05025	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CLI98_RS05030	COG0460	homoserine dehydrogenase
CLI98_RS05035	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CLI98_RS05040	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CLI98_RS05045	COG0647	UMP catabolic process
CLI98_RS05050	COG2445	Protein of unknown function DUF86
CLI98_RS05055	COG4470	Protein conserved in bacteria
CLI98_RS05070	COG0739	heme binding
CLI98_RS05080	COG0737	Belongs to the 5'-nucleotidase family
CLI98_RS05085	COG0730	response to heat
CLI98_RS05090	COG1801	Protein of unknown function DUF72
CLI98_RS05105	COG2508	Transcriptional regulator
CLI98_RS05110	COG0457	Tetratricopeptide repeat
CLI98_RS05125	COG2814	Major facilitator Superfamily
CLI98_RS05130	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CLI98_RS05135	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CLI98_RS05140	COG2356	endonuclease I
CLI98_RS05145	COG3842	ATPase activity
CLI98_RS05150	COG2188	Transcriptional regulator
CLI98_RS05155	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLI98_RS05160	COG0395	ABC-type sugar transport system, permease component
CLI98_RS05165	COG1175	transmembrane transport
CLI98_RS05170	COG1653	transport
CLI98_RS05175	COG2222	sugar isomerase
CLI98_RS05180	COG0789	Transcriptional regulator
CLI98_RS05205	COG0322	excinuclease ABC activity
CLI98_RS05210	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CLI98_RS05235	COG3409	Peptidoglycan-binding domain 1 protein
CLI98_RS05240	COG0719	Fe-S assembly protein
CLI98_RS05245	COG0822	iron-sulfur transferase activity
CLI98_RS05250	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CLI98_RS05255	COG0719	Fe-S assembly protein
CLI98_RS05260	COG0396	ATPase activity
CLI98_RS05270	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CLI98_RS05275	COG1464	Belongs to the NlpA lipoprotein family
CLI98_RS05280	COG2011	ABC-type metal ion transport system permease component
CLI98_RS05285	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLI98_RS05295	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI98_RS05300	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CLI98_RS05315	COG1393	Belongs to the ArsC family
CLI98_RS05320	COG1960	acyl-CoA dehydrogenase activity
CLI98_RS05325	COG0183	Belongs to the thiolase family
CLI98_RS05330	COG1024	Enoyl-CoA hydratase
CLI98_RS05330	COG1250	3-hydroxyacyl-CoA dehydrogenase
CLI98_RS05350	COG5577	PFAM Coat F domain
CLI98_RS05355	COG1846	Transcriptional regulator
CLI98_RS05360	COG0477	Major facilitator Superfamily
CLI98_RS05365	COG0583	DNA-binding transcription factor activity
CLI98_RS05385	COG1120	ATPase activity
CLI98_RS05400	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS05405	COG0783	Belongs to the Dps family
CLI98_RS05410	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CLI98_RS05415	COG0745	RESPONSE REGULATOR receiver
CLI98_RS05420	COG2770	Histidine kinase
CLI98_RS05420	COG2205	protein histidine kinase activity
CLI98_RS05430	COG1309	transcriptional regulator
CLI98_RS05435	COG0114	fumarate hydratase activity
CLI98_RS05445	COG0697	spore germination
CLI98_RS05450	COG0814	amino acid
CLI98_RS05460	COG2197	response regulator
CLI98_RS05465	COG4585	Histidine kinase
CLI98_RS05470	COG4758	membrane
CLI98_RS05475	COG3595	metallopeptidase activity
CLI98_RS05480	COG1842	Phage shock protein A
CLI98_RS05485	COG4758	membrane
CLI98_RS05490	COG2814	Major facilitator Superfamily
CLI98_RS05495	COG2096	Adenosyltransferase
CLI98_RS05500	COG1120	ATPase activity
CLI98_RS05505	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI98_RS05510	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLI98_RS05515	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS05520	COG3386	PFAM SMP-30 Gluconolaconase
CLI98_RS05525	COG2205	protein histidine kinase activity
CLI98_RS05530	COG0745	RESPONSE REGULATOR receiver
CLI98_RS05540	COG1191	sigma factor activity
CLI98_RS05550	COG2140	Oxalate decarboxylase
CLI98_RS05560	COG1120	ATPase activity
CLI98_RS05565	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI98_RS05570	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI98_RS05575	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLI98_RS05600	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI98_RS05605	COG0509	glycine decarboxylation via glycine cleavage system
CLI98_RS05610	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CLI98_RS05630	COG0492	ferredoxin-NADP+ reductase activity
CLI98_RS05635	COG3118	belongs to the thioredoxin family
CLI98_RS05645	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI98_RS05665	COG1309	transcriptional regulator
CLI98_RS05670	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
CLI98_RS05675	COG0531	amino acid
CLI98_RS05690	COG1988	membrane-bound metal-dependent
CLI98_RS05695	COG1368	sulfuric ester hydrolase activity
CLI98_RS05700	COG1910	domain protein
CLI98_RS05705	COG0725	ABC transporter, periplasmic molybdate-binding protein
CLI98_RS05710	COG4149	molybdate abc transporter
CLI98_RS05715	COG2197	response regulator
CLI98_RS05720	COG3850	Histidine kinase
CLI98_RS05725	COG1131	(ABC) transporter
CLI98_RS05735	COG0842	Transport permease protein
CLI98_RS05740	COG0656	L-ascorbic acid biosynthetic process
CLI98_RS05765	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CLI98_RS05770	COG3973	AAA domain
CLI98_RS05775	COG2860	membrane
CLI98_RS05785	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CLI98_RS05790	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CLI98_RS05795	COG2217	Heavy metal translocating P-type atpase
CLI98_RS05800	COG2217	Heavy metal translocating P-type atpase
CLI98_RS05805	COG2608	mercury ion transmembrane transporter activity
CLI98_RS05810	COG1937	Protein conserved in bacteria
CLI98_RS05815	COG0673	inositol 2-dehydrogenase activity
CLI98_RS05825	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLI98_RS05830	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CLI98_RS05835	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLI98_RS05840	COG1126	abc transporter atp-binding protein
CLI98_RS05845	COG0765	amino acid transport
CLI98_RS05850	COG0765	amino acid transport
CLI98_RS05855	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLI98_RS05860	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLI98_RS05865	COG0454	-acetyltransferase
CLI98_RS05870	COG0583	DNA-binding transcription factor activity
CLI98_RS05875	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS05880	COG2732	(Barnase) inhibitor
CLI98_RS05885	COG2732	(Barnase) inhibitor
CLI98_RS05900	COG0557	exoribonuclease II activity
CLI98_RS05905	COG1647	Serine aminopeptidase, S33
CLI98_RS05910	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CLI98_RS05915	COG1476	TRANSCRIPTIONal
CLI98_RS05920	COG1396	sequence-specific DNA binding
CLI98_RS05925	COG1396	sequence-specific DNA binding
CLI98_RS05930	COG1733	regulation of RNA biosynthetic process
CLI98_RS05955	COG1131	(ABC) transporter
CLI98_RS05960	COG1174	glycine betaine transport
CLI98_RS05965	COG1732	Glycine betaine
CLI98_RS05970	COG1174	glycine betaine transport
CLI98_RS05975	COG0517	IMP dehydrogenase activity
CLI98_RS05975	COG1125	glycine betaine transport
CLI98_RS05980	COG1510	regulation of RNA biosynthetic process
CLI98_RS05985	COG1174	glycine betaine transport
CLI98_RS05990	COG1732	Glycine betaine
CLI98_RS05995	COG1174	glycine betaine transport
CLI98_RS06000	COG0517	IMP dehydrogenase activity
CLI98_RS06000	COG1125	glycine betaine transport
CLI98_RS06005	COG1510	regulation of RNA biosynthetic process
CLI98_RS06010	COG2095	MarC family integral membrane protein
CLI98_RS06020	COG3064	Membrane
CLI98_RS06025	COG4640	response to antibiotic
CLI98_RS06030	COG0456	acetyltransferase
CLI98_RS06050	COG0126	phosphoglycerate kinase activity
CLI98_RS06060	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CLI98_RS06065	COG2390	Transcriptional regulator
CLI98_RS06070	COG2814	Major facilitator Superfamily
CLI98_RS06075	COG1609	Transcriptional regulator
CLI98_RS06080	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLI98_RS06085	COG0583	DNA-binding transcription factor activity
CLI98_RS06090	COG0697	spore germination
CLI98_RS06095	COG1113	amino acid transport
CLI98_RS06100	COG1737	Transcriptional regulator
CLI98_RS06105	COG1070	Carbohydrate kinase
CLI98_RS06130	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI98_RS06135	COG2186	Transcriptional regulator
CLI98_RS06140	COG1620	l-lactate permease
CLI98_RS06145	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CLI98_RS06155	COG5039	Polysaccharide pyruvyl transferase
CLI98_RS06160	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CLI98_RS06165	COG0110	maltose O-acetyltransferase activity
CLI98_RS06170	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CLI98_RS06175	COG2244	polysaccharide biosynthetic process
CLI98_RS06180	COG1216	Glycosyl transferase, family 2
CLI98_RS06185	COG5039	Polysaccharide pyruvyl transferase
CLI98_RS06190	COG1216	Glycosyl transferase, family 2
CLI98_RS06200	COG0438	transferase activity, transferring glycosyl groups
CLI98_RS06205	COG1215	transferase activity, transferring glycosyl groups
CLI98_RS06210	COG0438	transferase activity, transferring glycosyl groups
CLI98_RS06215	COG1086	Polysaccharide biosynthesis protein
CLI98_RS06220	COG0489	protein tyrosine kinase activity
CLI98_RS06225	COG3944	biosynthesis protein
CLI98_RS06230	COG1396	sequence-specific DNA binding
CLI98_RS06235	COG2272	Belongs to the type-B carboxylesterase lipase family
CLI98_RS06245	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CLI98_RS06250	COG2364	Membrane
CLI98_RS06255	COG0456	acetyltransferase
CLI98_RS06260	COG3479	Phenolic acid decarboxylase
CLI98_RS06320	COG2223	nitrite transmembrane transporter activity
CLI98_RS06325	COG1609	Transcriptional regulator
CLI98_RS06335	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CLI98_RS06340	COG0366	Alpha amylase catalytic
CLI98_RS06345	COG1554	hydrolase, family 65, central catalytic
CLI98_RS06350	COG5521	maltodextrose utilization protein MalA
CLI98_RS06355	COG3833	ABC-type maltose transport systems, permease component
CLI98_RS06360	COG1175	transmembrane transport
CLI98_RS06365	COG2182	Extracellular solute-binding protein
CLI98_RS06370	COG0366	Alpha amylase catalytic
CLI98_RS06375	COG1609	Transcriptional regulator
CLI98_RS06380	COG1611	Belongs to the LOG family
CLI98_RS06385	COG1694	Mazg nucleotide pyrophosphohydrolase
CLI98_RS06390	COG0659	secondary active sulfate transmembrane transporter activity
CLI98_RS06395	COG0288	reversible hydration of carbon dioxide
CLI98_RS06405	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLI98_RS06410	COG4290	ribonuclease
CLI98_RS06415	COG2162	N-hydroxyarylamine O-acetyltransferase activity
CLI98_RS06420	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI98_RS06430	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CLI98_RS06440	COG1051	belongs to the nudix hydrolase family
CLI98_RS06445	COG0492	ferredoxin-NADP+ reductase activity
CLI98_RS06450	COG3883	PFAM NLP P60 protein
CLI98_RS06450	COG0791	NLP P60 protein
CLI98_RS06455	COG0457	Tetratricopeptide repeat
CLI98_RS06460	COG5002	protein histidine kinase activity
CLI98_RS06465	COG0745	RESPONSE REGULATOR receiver
CLI98_RS06475	COG1132	(ABC) transporter
CLI98_RS06480	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CLI98_RS06480	COG0140	phosphoribosyl-ATP diphosphatase activity
CLI98_RS06505	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CLI98_RS06520	COG4990	cell redox homeostasis
CLI98_RS06525	COG0110	maltose O-acetyltransferase activity
CLI98_RS06545	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CLI98_RS06555	COG2188	Transcriptional regulator
CLI98_RS06560	COG1309	transcriptional regulator
CLI98_RS06565	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CLI98_RS06570	COG1950	PFAM Membrane protein of
CLI98_RS06575	COG1983	PspC domain protein
CLI98_RS06580	COG3595	metallopeptidase activity
CLI98_RS06595	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CLI98_RS06605	COG4897	Protein conserved in bacteria
CLI98_RS06610	COG3848	Pyruvate phosphate dikinase
CLI98_RS06610	COG0574	Belongs to the PEP-utilizing enzyme family
CLI98_RS06615	COG1309	transcriptional regulator
CLI98_RS06620	COG2814	Major facilitator Superfamily
CLI98_RS06655	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS06670	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CLI98_RS06680	COG0793	Belongs to the peptidase S41A family
CLI98_RS06680	COG3409	Peptidoglycan-binding domain 1 protein
CLI98_RS06685	COG3420	alginic acid biosynthetic process
CLI98_RS06690	COG2177	Part of the ABC transporter FtsEX involved in
CLI98_RS06695	COG2884	Cell division ATP-binding protein ftsE
CLI98_RS06700	COG2010	Cytochrome c
CLI98_RS06705	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLI98_RS06720	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CLI98_RS06735	COG1516	flagellar protein fliS
CLI98_RS06740	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CLI98_RS06745	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CLI98_RS06765	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CLI98_RS06770	COG4786	Flagellar basal body rod
CLI98_RS06770	COG1256	bacterial-type flagellum assembly
CLI98_RS06775	COG3418	PFAM FlgN family protein
CLI98_RS06780	COG2747	anti-sigma28 factor FlgM
CLI98_RS06790	COG1040	competence protein
CLI98_RS06800	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
CLI98_RS06805	COG1307	EDD domain protein, DegV family
CLI98_RS06810	COG2197	response regulator
CLI98_RS06815	COG4585	Histidine kinase
CLI98_RS06820	COG1739	Uncharacterized protein family UPF0029
CLI98_RS06825	COG1316	TRANSCRIPTIONal
CLI98_RS06830	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CLI98_RS06835	COG0438	transferase activity, transferring glycosyl groups
CLI98_RS06840	COG1215	transferase activity, transferring glycosyl groups
CLI98_RS06845	COG3206	protein involved in exopolysaccharide biosynthesis
CLI98_RS06850	COG3307	-O-antigen
CLI98_RS06855	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
CLI98_RS06860	COG0438	transferase activity, transferring glycosyl groups
CLI98_RS06860	COG0297	glycogen (starch) synthase activity
CLI98_RS06865	COG2244	polysaccharide biosynthetic process
CLI98_RS06875	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLI98_RS06875	COG2247	cell wall binding repeat
CLI98_RS06880	COG2385	sporulation resulting in formation of a cellular spore
CLI98_RS06880	COG2247	cell wall binding repeat
CLI98_RS06890	COG1316	TRANSCRIPTIONal
CLI98_RS06895	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CLI98_RS06900	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CLI98_RS06905	COG1134	teichoic acid transport
CLI98_RS06910	COG1682	transport, permease protein
CLI98_RS06915	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CLI98_RS06925	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CLI98_RS06930	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
CLI98_RS06935	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CLI98_RS06940	COG4193	domain, Protein
CLI98_RS06945	COG1482	cell wall glycoprotein biosynthetic process
CLI98_RS06950	COG0697	spore germination
CLI98_RS06955	COG0814	amino acid
CLI98_RS06965	COG1215	transferase activity, transferring glycosyl groups
CLI98_RS06970	COG2814	Major facilitator Superfamily
CLI98_RS06975	COG1316	TRANSCRIPTIONal
CLI98_RS06980	COG0561	phosphatase activity
CLI98_RS06985	COG2433	Pfam Transposase IS66
CLI98_RS06990	COG0791	NLP P60 protein
CLI98_RS07000	COG2843	Capsule synthesis protein
CLI98_RS07010	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CLI98_RS07020	COG0697	spore germination
CLI98_RS07025	COG0814	amino acid
CLI98_RS07035	COG1609	Transcriptional regulator
CLI98_RS07040	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLI98_RS07050	COG1129	ABC transporter
CLI98_RS07055	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLI98_RS07060	COG1879	ABC-type sugar transport system periplasmic component
CLI98_RS07065	COG3103	Sh3 type 3 domain protein
CLI98_RS07070	COG2249	NAD(P)H dehydrogenase (quinone) activity
CLI98_RS07075	COG3527	Alpha-acetolactate decarboxylase
CLI98_RS07080	COG0028	Belongs to the TPP enzyme family
CLI98_RS07085	COG0583	DNA-binding transcription factor activity
CLI98_RS07090	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CLI98_RS07105	COG5337	Spore coat protein CotH
CLI98_RS07115	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CLI98_RS07125	COG0405	Gamma-glutamyltransferase
CLI98_RS07130	COG1522	sequence-specific DNA binding
CLI98_RS07135	COG2059	Chromate
CLI98_RS07140	COG2059	Chromate
CLI98_RS07150	COG0655	NAD(P)H dehydrogenase (quinone) activity
CLI98_RS07155	COG0583	DNA-binding transcription factor activity
CLI98_RS07190	COG5444	nuclease activity
CLI98_RS07205	COG3878	Protein conserved in bacteria
CLI98_RS07210	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
CLI98_RS07215	COG4464	protein tyrosine phosphatase activity
CLI98_RS07220	COG0489	protein tyrosine kinase activity
CLI98_RS07225	COG3944	biosynthesis protein
CLI98_RS07240	COG4715	Zinc finger, swim domain protein
CLI98_RS07245	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CLI98_RS07250	COG0561	phosphatase activity
CLI98_RS07255	COG1349	DNA-binding transcription factor activity
CLI98_RS07260	COG0629	single-stranded DNA binding
CLI98_RS07285	COG0457	Tetratricopeptide repeat
CLI98_RS07290	COG4786	Flagellar basal body rod
CLI98_RS07295	COG4786	Flagellar basal body rod
CLI98_RS07300	COG1077	Cell shape determining protein MreB Mrl
CLI98_RS07305	COG1609	Transcriptional regulator
CLI98_RS07310	COG1846	Transcriptional regulator
CLI98_RS07315	COG2814	Major facilitator Superfamily
CLI98_RS07320	COG1953	Uracil, thiamine, allantoin
CLI98_RS07325	COG0477	Major facilitator Superfamily
CLI98_RS07330	COG1335	isochorismatase
CLI98_RS07335	COG0004	ammonium transporteR
CLI98_RS07340	COG0347	Belongs to the P(II) protein family
CLI98_RS07345	COG0772	Belongs to the SEDS family
CLI98_RS07350	COG0671	phosphoesterase, PA-phosphatase related
CLI98_RS07360	COG0739	heme binding
CLI98_RS07365	COG1247	-acetyltransferase
CLI98_RS07380	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLI98_RS07390	COG0726	polysaccharide deacetylase
CLI98_RS07400	COG1959	2 iron, 2 sulfur cluster binding
CLI98_RS07415	COG0831	urea catabolic process
CLI98_RS07425	COG1994	Peptidase M50
CLI98_RS07430	COG0457	Tetratricopeptide repeat
CLI98_RS07440	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CLI98_RS07450	COG2304	oxidoreductase activity
CLI98_RS07455	COG2304	oxidoreductase activity
CLI98_RS07460	COG2385	sporulation resulting in formation of a cellular spore
CLI98_RS07465	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CLI98_RS07475	COG4836	Membrane
CLI98_RS07545	COG0698	ribose 5-phosphate isomerase
CLI98_RS07550	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLI98_RS07560	COG0009	L-threonylcarbamoyladenylate synthase
CLI98_RS07565	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CLI98_RS07585	COG2890	protein-(glutamine-N5) methyltransferase activity
CLI98_RS07590	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CLI98_RS07595	COG0346	lactoylglutathione lyase activity
CLI98_RS07600	COG0789	Transcriptional regulator
CLI98_RS07605	COG0679	Auxin Efflux Carrier
CLI98_RS07610	COG0281	malic enzyme
CLI98_RS07625	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CLI98_RS07630	COG1494	fructose-1,6-bisphosphatase
CLI98_RS07635	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CLI98_RS07645	COG0191	fructose-bisphosphate aldolase activity
CLI98_RS07650	COG2204	response regulator
CLI98_RS07655	COG4821	SIS domain
CLI98_RS07670	COG0247	lactate metabolic process
CLI98_RS07670	COG2181	nitrate reductase activity
CLI98_RS07675	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLI98_RS07690	COG1132	(ABC) transporter
CLI98_RS07695	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLI98_RS07705	COG2181	nitrate reductase activity
CLI98_RS07710	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CLI98_RS07715	COG1140	nitrate reductase beta subunit
CLI98_RS07720	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CLI98_RS07725	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CLI98_RS07735	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CLI98_RS07740	COG2223	nitrite transmembrane transporter activity
CLI98_RS07750	COG4506	Protein conserved in bacteria
CLI98_RS07755	COG0457	Tetratricopeptide repeat
CLI98_RS07800	COG0010	Belongs to the arginase family
CLI98_RS07805	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CLI98_RS07810	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CLI98_RS07825	COG1994	Peptidase M50
CLI98_RS07830	COG1942	4-Oxalocrotonate Tautomerase
CLI98_RS07835	COG1846	Transcriptional regulator
CLI98_RS07840	COG0531	amino acid
CLI98_RS07845	COG3465	dGTPase activity
CLI98_RS07850	COG1078	dGTPase activity
CLI98_RS07865	COG1695	Transcriptional regulator
CLI98_RS07875	COG1131	(ABC) transporter
CLI98_RS07880	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
CLI98_RS07910	COG0583	DNA-binding transcription factor activity
CLI98_RS07915	COG2855	membrane
CLI98_RS07920	COG0280	phosphate acetyltransferase
CLI98_RS07930	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS07935	COG0436	Aminotransferase
CLI98_RS07965	COG2814	Major facilitator Superfamily
CLI98_RS07970	COG2814	Major facilitator Superfamily
CLI98_RS07975	COG0833	amino acid
CLI98_RS07980	COG4187	Peptidase family M20/M25/M40
CLI98_RS07985	COG1012	belongs to the aldehyde dehydrogenase family
CLI98_RS07990	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CLI98_RS07995	COG2205	protein histidine kinase activity
CLI98_RS08000	COG0745	RESPONSE REGULATOR receiver
CLI98_RS08015	COG1131	(ABC) transporter
CLI98_RS08020	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
CLI98_RS08025	COG1091	dTDP-4-dehydrorhamnose reductase activity
CLI98_RS08030	COG1088	dTDP-glucose 4,6-dehydratase activity
CLI98_RS08035	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CLI98_RS08040	COG3980	spore coat polysaccharide biosynthesis protein
CLI98_RS08045	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
CLI98_RS08050	COG2089	acid synthase
CLI98_RS08055	COG0456	acetyltransferase
CLI98_RS08060	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CLI98_RS08065	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CLI98_RS08070	COG0463	Glycosyl transferase, family 2
CLI98_RS08080	COG2363	Small membrane protein
CLI98_RS08085	COG2233	PERMEase
CLI98_RS08100	COG1216	Glycosyl transferase, family 2
CLI98_RS08115	COG1695	Transcriptional regulator
CLI98_RS08120	COG0351	phosphomethylpyrimidine kinase
CLI98_RS08130	COG1621	beta-fructofuranosidase activity
CLI98_RS08135	COG1263	PTS System
CLI98_RS08135	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI98_RS08140	COG3711	transcriptional antiterminator
CLI98_RS08150	COG1404	Belongs to the peptidase S8 family
CLI98_RS08155	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLI98_RS08160	COG0778	Nitroreductase
CLI98_RS08165	COG0772	Belongs to the SEDS family
CLI98_RS08170	COG0454	-acetyltransferase
CLI98_RS08190	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CLI98_RS08195	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CLI98_RS08200	COG2261	transglycosylase associated protein
CLI98_RS08205	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
CLI98_RS08210	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
CLI98_RS08215	COG2246	polysaccharide biosynthetic process
CLI98_RS08220	COG1309	transcriptional regulator
CLI98_RS08240	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CLI98_RS08245	COG2837	iron assimilation
CLI98_RS08250	COG2822	iron ion transport
CLI98_RS08265	COG0583	DNA-binding transcription factor activity
CLI98_RS08275	COG1346	cytolysis
CLI98_RS08280	COG4895	conserved protein (DUF2196)
CLI98_RS08285	COG0789	Transcriptional regulator
CLI98_RS08290	COG5504	Zn-dependent protease
CLI98_RS08295	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CLI98_RS08300	COG0346	lactoylglutathione lyase activity
CLI98_RS08305	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLI98_RS08310	COG1404	Belongs to the peptidase S8 family
CLI98_RS08315	COG1442	glycosyl transferase family 8
CLI98_RS08320	COG1846	Transcriptional regulator
CLI98_RS08325	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CLI98_RS08330	COG2357	RelA SpoT domain protein
CLI98_RS08335	COG1575	Belongs to the MenA family. Type 1 subfamily
CLI98_RS08355	COG1696	Membrane protein involved in D-alanine export
CLI98_RS08365	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
CLI98_RS08370	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CLI98_RS08375	COG1486	melibiose metabolic process
CLI98_RS08380	COG1447	Phosphotransferase system cellobiose-specific component IIA
CLI98_RS08385	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLI98_RS08390	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLI98_RS08395	COG3711	transcriptional antiterminator
CLI98_RS08395	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI98_RS08410	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI98_RS08415	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI98_RS08425	COG0640	Transcriptional regulator
CLI98_RS08430	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CLI98_RS08435	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLI98_RS08440	COG1447	Phosphotransferase system cellobiose-specific component IIA
CLI98_RS08445	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLI98_RS08450	COG2723	6-phospho-beta-galactosidase activity
CLI98_RS08455	COG1940	carbohydrate kinase activity
CLI98_RS08460	COG1482	cell wall glycoprotein biosynthetic process
CLI98_RS08470	COG0753	catalase activity
CLI98_RS08475	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
CLI98_RS08480	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CLI98_RS08485	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CLI98_RS08490	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CLI98_RS08495	COG4988	ABC transporter
CLI98_RS08500	COG1294	oxidase, subunit
CLI98_RS08505	COG1271	oxidase subunit
CLI98_RS08510	COG3493	citrate carrier protein
CLI98_RS08515	COG0726	polysaccharide deacetylase
CLI98_RS08520	COG3842	ATPase activity
CLI98_RS08525	COG2508	Transcriptional regulator
CLI98_RS08530	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLI98_RS08540	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CLI98_RS08550	COG4894	glucomannan catabolic process
CLI98_RS08555	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CLI98_RS08560	COG0500	methyltransferase
CLI98_RS08565	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CLI98_RS08585	COG0693	protein deglycase activity
CLI98_RS08585	COG0753	catalase activity
CLI98_RS08590	COG2851	Citrate transporter
CLI98_RS08595	COG2273	Hydrolase Family 16
CLI98_RS08600	COG3711	transcriptional antiterminator
CLI98_RS08605	COG2270	Major facilitator Superfamily
CLI98_RS08610	COG0513	Belongs to the DEAD box helicase family
CLI98_RS08655	COG0697	spore germination
CLI98_RS08660	COG0589	response to stress
CLI98_RS08675	COG0494	nUDIX hydrolase
CLI98_RS08680	COG3507	Belongs to the glycosyl hydrolase 43 family
CLI98_RS08705	COG0010	Belongs to the arginase family
CLI98_RS08710	COG0833	amino acid
CLI98_RS08715	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
CLI98_RS08720	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CLI98_RS08730	COG2390	Transcriptional regulator
CLI98_RS08735	COG0561	phosphatase activity
CLI98_RS08765	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLI98_RS08770	COG5294	Protein conserved in bacteria
CLI98_RS08775	COG0577	efflux transmembrane transporter activity
CLI98_RS08780	COG1136	(ABC) transporter
CLI98_RS08785	COG2205	protein histidine kinase activity
CLI98_RS08790	COG0745	RESPONSE REGULATOR receiver
CLI98_RS08795	COG2205	protein histidine kinase activity
CLI98_RS08800	COG0745	RESPONSE REGULATOR receiver
CLI98_RS08830	COG1082	Xylose isomerase domain protein TIM barrel
CLI98_RS08840	COG2814	Major facilitator Superfamily
CLI98_RS08870	COG1349	DNA-binding transcription factor activity
CLI98_RS08875	COG0667	Aldo Keto reductase
CLI98_RS08880	COG2814	Major facilitator Superfamily
CLI98_RS08895	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS08900	COG2197	response regulator
CLI98_RS08905	COG4585	Histidine kinase
CLI98_RS08910	COG3239	Fatty acid desaturase
CLI98_RS08920	COG1309	transcriptional regulator
CLI98_RS08925	COG1012	belongs to the aldehyde dehydrogenase family
CLI98_RS08930	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CLI98_RS08940	COG0640	Transcriptional regulator
CLI98_RS08945	COG2814	Major facilitator Superfamily
CLI98_RS08950	COG1714	RDD family
CLI98_RS08960	COG0501	Belongs to the peptidase M48B family
CLI98_RS08965	COG1715	Restriction endonuclease
CLI98_RS08970	COG0450	alkyl hydroperoxide reductase
CLI98_RS08975	COG3634	alkyl hydroperoxide reductase activity
CLI98_RS08980	COG3177	Filamentation induced by cAMP protein fic
CLI98_RS08985	COG1113	amino acid transport
CLI98_RS08995	COG2080	2 iron, 2 sulfur cluster binding
CLI98_RS09010	COG2068	MobA-Related Protein
CLI98_RS09015	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CLI98_RS09070	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
CLI98_RS09075	COG0667	Aldo Keto reductase
CLI98_RS09080	COG0456	acetyltransferase
CLI98_RS09085	COG0457	Tetratricopeptide repeat
CLI98_RS09090	COG0010	Belongs to the arginase family
CLI98_RS09095	COG0833	amino acid
CLI98_RS09100	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CLI98_RS09105	COG5658	integral membrane protein
CLI98_RS09110	COG0640	Transcriptional regulator
CLI98_RS09115	COG3829	transcription factor binding
CLI98_RS09125	COG0488	(ABC) transporter
CLI98_RS09140	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CLI98_RS09145	COG3850	Histidine kinase
CLI98_RS09145	COG5002	protein histidine kinase activity
CLI98_RS09150	COG0745	RESPONSE REGULATOR receiver
CLI98_RS09160	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CLI98_RS09165	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CLI98_RS09170	COG4853	Protein conserved in bacteria
CLI98_RS09175	COG4863	YycH protein
CLI98_RS09180	COG5002	protein histidine kinase activity
CLI98_RS09185	COG0745	RESPONSE REGULATOR receiver
CLI98_RS09220	COG0346	lactoylglutathione lyase activity
CLI98_RS09225	COG0305	Participates in initiation and elongation during chromosome replication
CLI98_RS09240	COG3093	addiction module antidote protein HigA
CLI98_RS09245	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CLI98_RS09250	COG0297	glycogen (starch) synthase activity
CLI98_RS09260	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
CLI98_RS09265	COG0438	transferase activity, transferring glycosyl groups
CLI98_RS09275	COG2112	serine threonine protein kinase
CLI98_RS09285	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
CLI98_RS09290	COG4241	membrane
CLI98_RS09300	COG5577	PFAM Coat F domain
CLI98_RS09305	COG1733	regulation of RNA biosynthetic process
CLI98_RS09315	COG0697	spore germination
CLI98_RS09320	COG1621	beta-fructofuranosidase activity
CLI98_RS09325	COG1621	beta-fructofuranosidase activity
CLI98_RS09330	COG1802	Transcriptional regulator
CLI98_RS09335	COG2318	DinB family
CLI98_RS09340	COG2211	Major facilitator Superfamily
CLI98_RS09345	COG0697	spore germination
CLI98_RS09355	COG0778	Nitroreductase
CLI98_RS09360	COG1846	Transcriptional regulator
CLI98_RS09365	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLI98_RS09370	COG1846	Transcriptional regulator
CLI98_RS09375	COG2153	protein acetylation
CLI98_RS09385	COG0546	phosphoglycolate phosphatase activity
CLI98_RS09415	COG1404	Belongs to the peptidase S8 family
CLI98_RS09425	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI98_RS09430	COG0697	spore germination
CLI98_RS09435	COG1078	dGTPase activity
CLI98_RS09445	COG1331	Highly conserved protein containing a thioredoxin domain
CLI98_RS09450	COG1266	CAAX protease self-immunity
CLI98_RS09455	COG0477	Major facilitator Superfamily
CLI98_RS09455	COG2814	Major facilitator Superfamily
CLI98_RS09460	COG0346	lactoylglutathione lyase activity
CLI98_RS09465	COG1609	Transcriptional regulator
CLI98_RS09475	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CLI98_RS09480	COG2169	Transcriptional regulator
CLI98_RS09490	COG0629	single-stranded DNA binding
CLI98_RS09500	COG0012	GTP binding
CLI98_RS09505	COG0243	molybdopterin cofactor binding
CLI98_RS09510	COG4481	Protein conserved in bacteria
CLI98_RS09515	COG3949	Membrane
CLI98_RS09530	COG1475	DNA binding
CLI98_RS09535	COG1192	Involved in chromosome partitioning
CLI98_RS09560	COG1847	R3H domain protein
CLI98_RS09565	COG0706	membrane insertase activity
CLI98_RS09585	COG0592	DNA-directed DNA polymerase activity
CLI98_RS09590	COG2501	S4 domain
CLI98_RS09605	COG0187	DNA topoisomerase II activity
CLI98_RS09610	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLI98_RS09645	COG0516	GMP reductase activity
CLI98_RS09645	COG0517	IMP dehydrogenase activity
CLI98_RS09650	COG1686	Belongs to the peptidase S11 family
CLI98_RS09670	COG1929	Belongs to the glycerate kinase type-1 family
CLI98_RS09680	COG1428	Deoxynucleoside kinase
CLI98_RS09685	COG1428	Deoxynucleoside kinase
CLI98_RS09690	COG3858	chitin binding
CLI98_RS09690	COG1388	LysM domain
CLI98_RS09695	COG1335	isochorismatase
CLI98_RS09700	COG0590	tRNA wobble adenosine to inosine editing
CLI98_RS09710	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CLI98_RS09715	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CLI98_RS09765	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
CLI98_RS09770	COG3853	Toxic anion resistance protein (TelA)
CLI98_RS09775	COG1982	Orn Lys Arg decarboxylase major
CLI98_RS09785	COG3870	Protein conserved in bacteria
CLI98_RS09790	COG1728	Protein conserved in bacteria
CLI98_RS09795	COG0470	DNA polymerase III
CLI98_RS09800	COG1774	PSP1 C-terminal conserved region
CLI98_RS09810	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CLI98_RS09820	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CLI98_RS09825	COG2002	toxin-antitoxin pair type II binding
CLI98_RS09830	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLI98_RS09830	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLI98_RS09835	COG0084	hydrolase, TatD family'
CLI98_RS09840	COG3583	domain protein
CLI98_RS09840	COG3584	3D domain protein
CLI98_RS09845	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CLI98_RS09850	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CLI98_RS09860	COG4466	Protein conserved in bacteria
CLI98_RS09875	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CLI98_RS09880	COG0251	oxidation-reduction process
CLI98_RS09895	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CLI98_RS09915	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CLI98_RS09920	COG2002	toxin-antitoxin pair type II binding
CLI98_RS09925	COG2244	polysaccharide biosynthetic process
CLI98_RS09930	COG3956	TIGRFAM MazG family protein
CLI98_RS09935	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CLI98_RS09950	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CLI98_RS09955	COG1098	S1 RNA binding domain
CLI98_RS09970	COG2208	phosphoserine phosphatase activity
CLI98_RS09975	COG2304	oxidoreductase activity
CLI98_RS09980	COG0515	serine threonine protein kinase
CLI98_RS09985	COG0037	tRNA processing
CLI98_RS09990	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CLI98_RS09995	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLI98_RS10010	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CLI98_RS10015	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CLI98_RS10020	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CLI98_RS10025	COG0512	Glutamine amidotransferase of anthranilate synthase
CLI98_RS10030	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CLI98_RS10035	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CLI98_RS10040	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CLI98_RS10045	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CLI98_RS10050	COG1396	sequence-specific DNA binding
CLI98_RS10055	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CLI98_RS10060	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CLI98_RS10140	COG4463	regulation of RNA biosynthetic process
CLI98_RS10145	COG3880	PFAM UvrB UvrC protein
CLI98_RS10155	COG0542	response to heat
CLI98_RS10160	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CLI98_RS10165	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
CLI98_RS10170	COG4956	integral membrane protein (PIN domain superfamily)
CLI98_RS10190	COG1045	serine acetyltransferase
CLI98_RS10200	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
CLI98_RS10205	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLI98_RS10210	COG3688	RNA-binding protein containing a PIN domain
CLI98_RS10215	COG1595	DNA-templated transcription, initiation
CLI98_RS10225	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CLI98_RS10230	COG0250	Participates in transcription elongation, termination and antitermination
CLI98_RS10255	COG2813	Specifically methylates the guanine in position
CLI98_RS10270	COG1358	cellular component organization or biogenesis
CLI98_RS10295	COG0596	Alpha beta hydrolase
CLI98_RS10405	COG0201	protein transport
CLI98_RS10415	COG0024	Methionine aminopeptidase
CLI98_RS10425	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CLI98_RS10450	COG1122	ATPase activity
CLI98_RS10455	COG1122	ATPase activity
CLI98_RS10460	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLI98_RS10480	COG2226	methyltransferase
CLI98_RS10485	COG2318	DinB family
CLI98_RS10495	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLI98_RS10500	COG0489	protein tyrosine kinase activity
CLI98_RS10510	COG2194	sulfuric ester hydrolase activity
CLI98_RS10515	COG0726	polysaccharide deacetylase
CLI98_RS10575	COG0738	Major facilitator superfamily
CLI98_RS10580	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CLI98_RS10595	COG0659	secondary active sulfate transmembrane transporter activity
CLI98_RS10600	COG0385	Bile acid
CLI98_RS10610	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI98_RS10615	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI98_RS10620	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLI98_RS10625	COG2207	Transcriptional regulator
CLI98_RS10625	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLI98_RS10630	COG3876	Protein conserved in bacteria
CLI98_RS10635	COG1472	Belongs to the glycosyl hydrolase 3 family
CLI98_RS10640	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CLI98_RS10645	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI98_RS10645	COG1263	PTS System
CLI98_RS10655	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLI98_RS10660	COG1683	Conserved Protein
CLI98_RS10690	COG1595	DNA-templated transcription, initiation
CLI98_RS10695	COG5662	AntiSigma factor
CLI98_RS10700	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CLI98_RS10705	COG4856	YbbR-like protein
CLI98_RS10745	COG1346	cytolysis
CLI98_RS10750	COG1380	Effector of murein hydrolase LrgA
CLI98_RS10755	COG1846	Transcriptional regulator
CLI98_RS10760	COG1113	amino acid transport
CLI98_RS10765	COG1011	Hydrolase
CLI98_RS10770	COG4585	Histidine kinase
CLI98_RS10775	COG2197	response regulator
CLI98_RS10780	COG1131	(ABC) transporter
CLI98_RS10820	COG0531	amino acid
CLI98_RS10825	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
CLI98_RS10840	COG0584	glycerophosphoryl diester phosphodiesterase
CLI98_RS10845	COG2271	Major facilitator Superfamily
CLI98_RS10860	COG2368	4-hydroxyphenylacetate
CLI98_RS10870	COG3409	Peptidoglycan-binding domain 1 protein
CLI98_RS10885	COG0371	Dehydrogenase
CLI98_RS10895	COG1183	phosphatidylcholine synthase activity
CLI98_RS10900	COG0586	Pfam SNARE associated Golgi protein
CLI98_RS10905	COG0688	phosphatidylethanolamine metabolic process
CLI98_RS10920	COG1301	dicarboxylic acid transport
CLI98_RS10925	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CLI98_RS10930	COG0833	amino acid
CLI98_RS10935	COG2040	homocysteine
CLI98_RS10940	COG1115	amino acid carrier protein
CLI98_RS10945	COG2066	Belongs to the glutaminase family
CLI98_RS10950	COG4191	Histidine kinase
CLI98_RS10955	COG0784	Response regulator, receiver
CLI98_RS10960	COG3173	Aminoglycoside phosphotransferase
CLI98_RS10980	COG3773	Cell wall hydrolase
CLI98_RS10990	COG3540	Alkaline phosphatase
CLI98_RS10995	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CLI98_RS11000	COG0805	protein transport
CLI98_RS11010	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CLI98_RS11015	COG0477	Major facilitator Superfamily
CLI98_RS11020	COG1309	transcriptional regulator
CLI98_RS11025	COG0252	asparaginase activity
CLI98_RS11030	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
CLI98_RS11035	COG3012	SEC-C Motif Domain Protein
CLI98_RS11035	COG1405	negative regulation of cell septum assembly
CLI98_RS11040	COG0667	Aldo Keto reductase
CLI98_RS11050	COG1595	DNA-templated transcription, initiation
CLI98_RS11055	COG1595	DNA-templated transcription, initiation
CLI98_RS11060	COG1876	peptidase activity
CLI98_RS11065	COG0457	Tetratricopeptide repeat
CLI98_RS11070	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS11080	COG0366	Alpha amylase catalytic
CLI98_RS11085	COG0803	Belongs to the bacterial solute-binding protein 9 family
CLI98_RS11090	COG1121	(ABC) transporter
CLI98_RS11095	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CLI98_RS11100	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLI98_RS11105	COG2310	stress, protein
CLI98_RS11110	COG2310	stress, protein
CLI98_RS11115	COG2310	stress, protein
CLI98_RS11120	COG0861	Integral membrane protein TerC family
CLI98_RS11130	COG3853	Toxic anion resistance protein (TelA)
CLI98_RS11135	COG0477	Major facilitator Superfamily
CLI98_RS11140	COG0517	IMP dehydrogenase activity
CLI98_RS11140	COG4175	Glycine betaine
CLI98_RS11145	COG4176	ABC-type proline glycine betaine transport system permease component
CLI98_RS11150	COG2113	Glycine betaine
CLI98_RS11155	COG1473	amidohydrolase
CLI98_RS11160	COG1288	antiporter activity
CLI98_RS11170	COG0366	Alpha amylase catalytic
CLI98_RS11180	COG2814	Major facilitator Superfamily
CLI98_RS11185	COG1846	Transcriptional regulator
CLI98_RS11190	COG1280	lysine exporter protein (LysE YggA)
CLI98_RS11195	COG3403	YqcI/YcgG family
CLI98_RS11200	COG1113	amino acid transport
CLI98_RS11205	COG3665	Urea carboxylase-associated protein
CLI98_RS11220	COG1660	Displays ATPase and GTPase activities
CLI98_RS11230	COG2271	Major facilitator Superfamily
CLI98_RS11235	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CLI98_RS11240	COG2226	methyltransferase
CLI98_RS11245	COG0583	DNA-binding transcription factor activity
CLI98_RS11250	COG3458	cephalosporin-C deacetylase activity
CLI98_RS11255	COG3541	Predicted nucleotidyltransferase
CLI98_RS11260	COG0506	proline dehydrogenase activity
CLI98_RS11265	COG1012	belongs to the aldehyde dehydrogenase family
CLI98_RS11270	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CLI98_RS11275	COG2508	Transcriptional regulator
CLI98_RS11285	COG1587	Uroporphyrinogen-III synthase
CLI98_RS11285	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CLI98_RS11290	COG2146	nitrite reductase [NAD(P)H] activity
CLI98_RS11295	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CLI98_RS11300	COG0243	molybdopterin cofactor binding
CLI98_RS11305	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CLI98_RS11310	COG2223	nitrite transmembrane transporter activity
CLI98_RS11315	COG0523	cobalamin synthesis protein
CLI98_RS11320	COG1063	alcohol dehydrogenase
CLI98_RS11325	COG1714	RDD family
CLI98_RS11335	COG2723	6-phospho-beta-galactosidase activity
CLI98_RS11345	COG3209	COG3209 Rhs family protein
CLI98_RS11350	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CLI98_RS11355	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
CLI98_RS11360	COG1733	regulation of RNA biosynthetic process
CLI98_RS11370	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS11375	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS11380	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS11385	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
CLI98_RS11400	COG2364	Membrane
CLI98_RS11405	COG1126	abc transporter atp-binding protein
CLI98_RS11410	COG0765	amino acid transport
CLI98_RS11415	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLI98_RS11420	COG0583	DNA-binding transcription factor activity
CLI98_RS11425	COG0163	prenyltransferase activity
CLI98_RS11430	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CLI98_RS11445	COG3104	oligopeptide transport
CLI98_RS11450	COG5434	Belongs to the glycosyl hydrolase 28 family
CLI98_RS11460	COG0697	spore germination
CLI98_RS11470	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CLI98_RS11475	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLI98_RS11480	COG0456	acetyltransferase
CLI98_RS11485	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLI98_RS11490	COG0765	amino acid transport
CLI98_RS11495	COG1126	abc transporter atp-binding protein
CLI98_RS11500	COG1473	amidohydrolase
CLI98_RS11505	COG2079	MmgE PrpD family protein
CLI98_RS11510	COG1136	(ABC) transporter
CLI98_RS11515	COG0577	efflux transmembrane transporter activity
CLI98_RS11520	COG0745	RESPONSE REGULATOR receiver
CLI98_RS11525	COG5002	protein histidine kinase activity
CLI98_RS11525	COG3850	Histidine kinase
CLI98_RS11530	COG0457	Tetratricopeptide repeat
CLI98_RS11545	COG0527	aspartate kinase activity
CLI98_RS11550	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI98_RS11555	COG4605	iron ion homeostasis
CLI98_RS11560	COG4604	ABC transporter, ATP-binding protein
CLI98_RS11565	COG4607	ABC-type enterochelin transport system periplasmic component
CLI98_RS11570	COG2814	Major facilitator Superfamily
CLI98_RS11575	COG1309	transcriptional regulator
CLI98_RS11580	COG0778	Nitroreductase
CLI98_RS11585	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CLI98_RS11590	COG0640	Transcriptional regulator
CLI98_RS11595	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI98_RS11600	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CLI98_RS11605	COG1012	belongs to the aldehyde dehydrogenase family
CLI98_RS11610	COG4975	Glucose uptake
CLI98_RS11615	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS11620	COG4549	nuclear export factor GLE1
CLI98_RS11625	COG1276	copper resistance
CLI98_RS11625	COG2372	response to copper ion
CLI98_RS11630	COG1349	DNA-binding transcription factor activity
CLI98_RS11640	COG2213	PTS system mannitol-specific
CLI98_RS11645	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI98_RS11655	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CLI98_RS11665	COG0561	phosphatase activity
CLI98_RS11675	COG1914	H( )-stimulated, divalent metal cation uptake system
CLI98_RS11685	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CLI98_RS11690	COG1984	allophanate hydrolase subunit 2
CLI98_RS11695	COG1414	Transcriptional regulator
CLI98_RS11700	COG2755	lipolytic protein G-D-S-L family
CLI98_RS11710	COG2329	Antibiotic biosynthesis monooxygenase
CLI98_RS11715	COG0768	penicillin binding
CLI98_RS11720	COG4989	oxidoreductase activity
CLI98_RS11725	COG3711	transcriptional antiterminator
CLI98_RS11730	COG0318	PFAM AMP-dependent synthetase and ligase
CLI98_RS11735	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS11740	COG1917	Cupin 2, conserved barrel domain protein
CLI98_RS11745	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLI98_RS11750	COG3871	stress protein (general stress protein 26)
CLI98_RS11760	COG2814	Major facilitator Superfamily
CLI98_RS11765	COG1522	sequence-specific DNA binding
CLI98_RS11770	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CLI98_RS11770	COG0551	DNA topoisomerase type I activity
CLI98_RS11775	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
CLI98_RS11780	COG3706	GGDEF domain
CLI98_RS11785	COG5298	Protein conserved in bacteria
CLI98_RS11790	COG1215	transferase activity, transferring glycosyl groups
CLI98_RS11800	COG0531	amino acid
CLI98_RS11805	COG0494	nUDIX hydrolase
CLI98_RS11810	COG0028	Belongs to the TPP enzyme family
CLI98_RS11815	COG1388	LysM domain
CLI98_RS11815	COG3409	Peptidoglycan-binding domain 1 protein
CLI98_RS11815	COG5632	N-Acetylmuramoyl-L-alanine amidase
CLI98_RS11830	COG4282	regulation of fungal-type cell wall biogenesis
CLI98_RS11870	COG1914	H( )-stimulated, divalent metal cation uptake system
CLI98_RS11885	COG4876	unkown
CLI98_RS11895	COG2076	Multidrug Resistance protein
CLI98_RS11900	COG2217	Heavy metal translocating P-type atpase
CLI98_RS11905	COG3729	General stress protein
CLI98_RS11910	COG0662	Cupin 2, conserved barrel domain protein
CLI98_RS11915	COG2329	Antibiotic biosynthesis monooxygenase
CLI98_RS11920	COG3546	catalase activity
CLI98_RS11925	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CLI98_RS11930	COG3290	protein histidine kinase activity
CLI98_RS11935	COG4565	transcriptional regulatory protein
CLI98_RS11940	COG1301	dicarboxylic acid transport
CLI98_RS11945	COG0628	permease
CLI98_RS11950	COG1131	(ABC) transporter
CLI98_RS11955	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
CLI98_RS11965	COG1960	acyl-CoA dehydrogenase activity
CLI98_RS11980	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CLI98_RS11985	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI98_RS11995	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CLI98_RS12000	COG0513	Belongs to the DEAD box helicase family
CLI98_RS12005	COG3402	PFAM membrane-flanked domain
CLI98_RS12010	COG3428	Bacterial PH domain
CLI98_RS12015	COG0705	Rhomboid family
CLI98_RS12025	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CLI98_RS12030	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLI98_RS12035	COG0864	Transcriptional regulator
CLI98_RS12040	COG2337	Toxic component of a toxin-antitoxin (TA) module
CLI98_RS12045	COG1366	Belongs to the anti-sigma-factor antagonist family
CLI98_RS12050	COG1366	Belongs to the anti-sigma-factor antagonist family
CLI98_RS12055	COG2172	sigma factor antagonist activity
CLI98_RS12060	COG2208	phosphoserine phosphatase activity
CLI98_RS12065	COG1366	Belongs to the anti-sigma-factor antagonist family
CLI98_RS12075	COG1191	sigma factor activity
CLI98_RS12080	COG2208	phosphoserine phosphatase activity
CLI98_RS12085	COG2183	response to ionizing radiation
CLI98_RS12135	COG0457	Tetratricopeptide repeat
CLI98_RS12140	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CLI98_RS12145	COG0477	Major facilitator Superfamily
CLI98_RS12165	COG2030	dehydratase
CLI98_RS12180	COG1959	2 iron, 2 sulfur cluster binding
CLI98_RS12185	COG2910	NAD(P)H-binding
CLI98_RS12195	COG1309	transcriptional regulator
CLI98_RS12200	COG3239	Fatty acid desaturase
CLI98_RS12210	COG1278	Cold shock
CLI98_RS12215	COG1329	Transcriptional regulator
CLI98_RS12220	COG1937	Protein conserved in bacteria
CLI98_RS12225	COG2210	Belongs to the sulfur carrier protein TusA family
CLI98_RS12230	COG1054	Belongs to the UPF0176 family
CLI98_RS12235	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CLI98_RS12235	COG0425	Belongs to the sulfur carrier protein TusA family
CLI98_RS12245	COG0425	Belongs to the sulfur carrier protein TusA family
CLI98_RS12250	COG0730	response to heat
CLI98_RS12255	COG1794	racemase activity, acting on amino acids and derivatives
CLI98_RS12270	COG3621	Patatin-like phospholipase
CLI98_RS12280	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CLI98_RS12285	COG1802	Transcriptional regulator
CLI98_RS12290	COG0251	oxidation-reduction process
CLI98_RS12295	COG0814	amino acid
CLI98_RS12300	COG1473	amidohydrolase
CLI98_RS12305	COG2207	Transcriptional regulator
CLI98_RS12305	COG1917	Cupin 2, conserved barrel domain protein
CLI98_RS12315	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI98_RS12320	COG0477	Major facilitator Superfamily
CLI98_RS12340	COG0277	FAD linked oxidase domain protein
CLI98_RS12365	COG0662	Cupin 2, conserved barrel domain protein
CLI98_RS12370	COG2318	DinB family
CLI98_RS12375	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CLI98_RS12400	COG1064	alcohol dehydrogenase
CLI98_RS12405	COG0789	Transcriptional regulator
CLI98_RS12415	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI98_RS12430	COG2814	Major facilitator Superfamily
CLI98_RS12435	COG1309	transcriptional regulator
CLI98_RS12440	COG0697	spore germination
CLI98_RS12445	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI98_RS12450	COG5577	PFAM Coat F domain
CLI98_RS12460	COG1063	alcohol dehydrogenase
CLI98_RS12465	COG5577	PFAM Coat F domain
CLI98_RS12475	COG0738	Major facilitator superfamily
CLI98_RS12495	COG4585	Histidine kinase
CLI98_RS12500	COG2197	response regulator
CLI98_RS12505	COG2409	Drug exporters of the RND superfamily
CLI98_RS12510	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CLI98_RS12515	COG0488	(ABC) transporter
CLI98_RS12520	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLI98_RS12525	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLI98_RS12535	COG2814	Major facilitator Superfamily
CLI98_RS12540	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CLI98_RS12550	COG0730	response to heat
CLI98_RS12555	COG0456	acetyltransferase
CLI98_RS12560	COG4978	Transcriptional regulator
CLI98_RS12560	COG0789	Transcriptional regulator
CLI98_RS12565	COG0697	spore germination
CLI98_RS12570	COG1051	belongs to the nudix hydrolase family
CLI98_RS12575	COG2226	methyltransferase
CLI98_RS12580	COG0473	3-isopropylmalate dehydrogenase activity
CLI98_RS12585	COG1802	Transcriptional regulator
CLI98_RS12590	COG1819	glycosyl
CLI98_RS12605	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CLI98_RS12610	COG1388	LysM domain
CLI98_RS12615	COG2814	Major facilitator Superfamily
CLI98_RS12620	COG2188	Transcriptional regulator
CLI98_RS12625	COG2186	Transcriptional regulator
CLI98_RS12630	COG2807	transmembrane transport
CLI98_RS12635	COG2076	Multidrug Resistance protein
CLI98_RS12640	COG2076	Multidrug Resistance protein
CLI98_RS12645	COG1309	transcriptional regulator
CLI98_RS12650	COG0531	amino acid
CLI98_RS12660	COG3832	glyoxalase III activity
CLI98_RS12665	COG0604	alcohol dehydrogenase
CLI98_RS12670	COG2814	Major facilitator Superfamily
CLI98_RS12710	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CLI98_RS12715	COG0802	atpase or kinase
CLI98_RS12720	COG1214	PFAM Peptidase M22, glycoprotease
CLI98_RS12725	COG0456	acetyltransferase
CLI98_RS12730	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CLI98_RS12735	COG0488	(ABC) transporter
CLI98_RS12750	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CLI98_RS12755	COG0805	protein transport
CLI98_RS12765	COG1266	CAAX protease self-immunity
CLI98_RS12780	COG3409	Peptidoglycan-binding domain 1 protein
CLI98_RS12800	COG0457	Tetratricopeptide repeat
CLI98_RS12805	COG1063	alcohol dehydrogenase
CLI98_RS12810	COG2211	Major facilitator Superfamily
CLI98_RS12815	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLI98_RS12825	COG1842	Phage shock protein A
CLI98_RS12830	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CLI98_RS12835	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CLI98_RS12840	COG4260	virion core protein, lumpy skin disease virus
CLI98_RS12845	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CLI98_RS12845	COG2755	lipolytic protein G-D-S-L family
CLI98_RS12855	COG1595	DNA-templated transcription, initiation
CLI98_RS12860	COG1063	alcohol dehydrogenase
CLI98_RS12865	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CLI98_RS12870	COG0823	Involved in the tonB-independent uptake of proteins
CLI98_RS12880	COG2132	Multicopper oxidase
CLI98_RS12885	COG1113	amino acid transport
CLI98_RS12890	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CLI98_RS12895	COG0714	Associated with various cellular activities
CLI98_RS12900	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
CLI98_RS12905	COG1305	Transglutaminase-like
CLI98_RS12915	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CLI98_RS12935	COG2211	Major facilitator Superfamily
CLI98_RS12950	COG2252	PERMEase
CLI98_RS12955	COG3064	Membrane
CLI98_RS12975	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CLI98_RS12980	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CLI98_RS12985	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CLI98_RS12990	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CLI98_RS12995	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CLI98_RS13010	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CLI98_RS13020	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CLI98_RS13025	COG0138	bifunctional purine biosynthesis protein purh
CLI98_RS13030	COG0151	Belongs to the GarS family
CLI98_RS13040	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CLI98_RS13045	COG1470	cell adhesion involved in biofilm formation
CLI98_RS13050	COG4496	protein, YerC YecD
CLI98_RS13055	COG0069	glutamate synthase activity
CLI98_RS13070	COG0210	DNA helicase
CLI98_RS13080	COG4851	CamS sex pheromone cAM373 precursor
CLI98_RS13085	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CLI98_RS13090	COG1285	pathogenesis
CLI98_RS13095	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CLI98_RS13115	COG1309	transcriptional regulator
CLI98_RS13120	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CLI98_RS13125	COG1597	lipid kinase activity
CLI98_RS13130	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CLI98_RS13200	COG5444	nuclease activity
CLI98_RS13230	COG3546	catalase activity
CLI98_RS13235	COG0454	-acetyltransferase
CLI98_RS13245	COG2323	membrane
CLI98_RS13250	COG2329	Antibiotic biosynthesis monooxygenase
CLI98_RS13255	COG0346	lactoylglutathione lyase activity
CLI98_RS13265	COG1366	Belongs to the anti-sigma-factor antagonist family
CLI98_RS13270	COG5583	Uncharacterized small protein (DUF2292)
CLI98_RS13275	COG0196	riboflavin kinase activity
CLI98_RS13280	COG0670	Belongs to the BI1 family
CLI98_RS13285	COG1846	Transcriptional regulator
CLI98_RS13290	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CLI98_RS13300	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CLI98_RS13300	COG2124	cytochrome p450
CLI98_RS13315	COG1131	(ABC) transporter
CLI98_RS13330	COG1368	sulfuric ester hydrolase activity
CLI98_RS13335	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CLI98_RS13340	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLI98_RS13345	COG1442	glycosyl transferase family 8
CLI98_RS13350	COG1216	Glycosyl transferase, family 2
CLI98_RS13355	COG1442	glycosyl transferase family 8
CLI98_RS13360	COG2223	nitrite transmembrane transporter activity
CLI98_RS13365	COG0531	amino acid
CLI98_RS13370	COG1012	belongs to the aldehyde dehydrogenase family
CLI98_RS13375	COG0840	transmembrane signaling receptor activity
CLI98_RS13380	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS13385	COG0463	Glycosyl transferase, family 2
CLI98_RS13390	COG0488	(ABC) transporter
CLI98_RS13395	COG0789	Transcriptional regulator
CLI98_RS13400	COG2814	Major facilitator Superfamily
CLI98_RS13405	COG0488	(ABC) transporter
CLI98_RS13410	COG0513	Belongs to the DEAD box helicase family
CLI98_RS13415	COG0456	acetyltransferase
CLI98_RS13420	COG2130	NADP-dependent
CLI98_RS13435	COG3866	Pectate lyase
CLI98_RS13440	COG0471	metal ion transport
CLI98_RS13460	COG0745	RESPONSE REGULATOR receiver
CLI98_RS13460	COG2972	Histidine kinase
CLI98_RS13465	COG3279	Response regulator of the LytR AlgR family
CLI98_RS13475	COG3764	Sortase (surface protein transpeptidase)
CLI98_RS13480	COG3290	protein histidine kinase activity
CLI98_RS13485	COG4565	transcriptional regulatory protein
CLI98_RS13490	COG3181	Tripartite tricarboxylate transporter family receptor
CLI98_RS13495	COG2851	Citrate transporter
CLI98_RS13500	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLI98_RS13505	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
CLI98_RS13515	COG2258	MOSC domain
CLI98_RS13535	COG0024	Methionine aminopeptidase
CLI98_RS13540	COG1263	PTS System
CLI98_RS13540	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI98_RS13550	COG1368	sulfuric ester hydrolase activity
CLI98_RS13560	COG0071	Belongs to the small heat shock protein (HSP20) family
CLI98_RS13575	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI98_RS13575	COG1263	PTS System
CLI98_RS13580	COG0366	Alpha amylase catalytic
CLI98_RS13585	COG2188	Transcriptional regulator
CLI98_RS13590	COG0778	Nitroreductase
CLI98_RS13605	COG0737	Belongs to the 5'-nucleotidase family
CLI98_RS13610	COG0693	protein deglycase activity
CLI98_RS13615	COG1609	Transcriptional regulator
CLI98_RS13630	COG2814	Major facilitator Superfamily
CLI98_RS13640	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLI98_RS13645	COG4980	gas vesicle protein
CLI98_RS13650	COG1295	ribonuclease BN
CLI98_RS13655	COG0477	Major facilitator Superfamily
CLI98_RS13660	COG0387	Pfam Sodium calcium exchanger
CLI98_RS13670	COG0668	transmembrane transport
CLI98_RS13675	COG0535	radical SAM domain protein
CLI98_RS13685	COG0726	polysaccharide deacetylase
CLI98_RS13705	COG0745	RESPONSE REGULATOR receiver
CLI98_RS13710	COG2205	protein histidine kinase activity
CLI98_RS13715	COG2084	Dehydrogenase
CLI98_RS13725	COG0598	Magnesium transport protein CorA
CLI98_RS13730	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CLI98_RS13735	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CLI98_RS13755	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CLI98_RS13760	COG4637	Psort location Cytoplasmic, score
CLI98_RS13765	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CLI98_RS13770	COG0022	dehydrogenase e1 component
CLI98_RS13775	COG0508	dehydrogenase complex catalyzes the overall conversion of
CLI98_RS13780	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CLI98_RS13785	COG3284	Transcriptional regulator
CLI98_RS13795	COG1486	melibiose metabolic process
CLI98_RS13800	COG1737	Transcriptional regulator
CLI98_RS13805	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI98_RS13805	COG1263	PTS System
CLI98_RS13810	COG1132	(ABC) transporter
CLI98_RS13815	COG1132	(ABC) transporter
CLI98_RS13820	COG2259	Doxx family
CLI98_RS13825	COG2514	catechol 2,3-dioxygenase activity
CLI98_RS13835	COG1695	Transcriptional regulator
CLI98_RS13840	COG2249	NAD(P)H dehydrogenase (quinone) activity
CLI98_RS13845	COG3936	Protein involved in polysaccharide intercellular adhesin (PIA) synthesis biofilm formation
CLI98_RS13850	COG0574	Belongs to the PEP-utilizing enzyme family
CLI98_RS13850	COG3848	Pyruvate phosphate dikinase
CLI98_RS13855	COG2732	(Barnase) inhibitor
CLI98_RS13860	COG2318	DinB family
CLI98_RS13865	COG2814	Major facilitator Superfamily
CLI98_RS13870	COG1846	Transcriptional regulator
CLI98_RS13875	COG0392	lysyltransferase activity
CLI98_RS13875	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CLI98_RS13880	COG0384	phenazine biosynthesis protein PhzF
CLI98_RS13885	COG0778	Nitroreductase
CLI98_RS13900	COG1090	epimerase
CLI98_RS13915	COG2814	Major facilitator Superfamily
CLI98_RS13925	COG3591	Belongs to the peptidase S1B family
CLI98_RS13940	COG3103	Sh3 type 3 domain protein
CLI98_RS13945	COG5658	integral membrane protein
CLI98_RS13950	COG0596	Alpha beta hydrolase
CLI98_RS13955	COG0463	Glycosyl transferase, family 2
CLI98_RS13960	COG4485	Bacterial membrane protein, YfhO
CLI98_RS13965	COG1988	membrane-bound metal-dependent
CLI98_RS13970	COG1194	a g-specific adenine glycosylase
CLI98_RS13980	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS14000	COG1132	(ABC) transporter
CLI98_RS14005	COG4129	membrane
CLI98_RS14015	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CLI98_RS14020	COG0735	belongs to the Fur family
CLI98_RS14135	COG3340	Belongs to the peptidase S51 family
CLI98_RS14145	COG0277	FAD linked oxidase domain protein
CLI98_RS14155	COG0747	negative chemotaxis
CLI98_RS14160	COG0601	transmembrane transport
CLI98_RS14165	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLI98_RS14170	COG0444	Belongs to the ABC transporter superfamily
CLI98_RS14175	COG4608	Belongs to the ABC transporter superfamily
CLI98_RS14180	COG0753	catalase activity
CLI98_RS14190	COG1116	anion transmembrane transporter activity
CLI98_RS14195	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLI98_RS14200	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLI98_RS14220	COG1476	TRANSCRIPTIONal
CLI98_RS14230	COG3382	B3 4 domain protein
CLI98_RS14235	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CLI98_RS14245	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CLI98_RS14250	COG0789	Transcriptional regulator
CLI98_RS14255	COG1664	Polymer-forming cytoskeletal
CLI98_RS14260	COG1664	Polymer-forming cytoskeletal
CLI98_RS14270	COG2766	serine protein kinase
CLI98_RS14285	COG1846	Transcriptional regulator
CLI98_RS14290	COG1566	PFAM secretion protein HlyD family protein
CLI98_RS14295	COG2814	Major facilitator Superfamily
CLI98_RS14300	COG0655	NAD(P)H dehydrogenase (quinone) activity
CLI98_RS14315	COG1725	Transcriptional regulator
CLI98_RS14320	COG1131	(ABC) transporter
CLI98_RS14325	COG1131	(ABC) transporter
CLI98_RS14330	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
CLI98_RS14335	COG1278	Cold shock
CLI98_RS14345	COG1464	Belongs to the NlpA lipoprotein family
CLI98_RS14350	COG3706	GGDEF domain
CLI98_RS14355	COG1823	symporter activity
CLI98_RS14375	COG5577	PFAM Coat F domain
CLI98_RS14380	COG4085	toxin activity
CLI98_RS14380	COG1525	nuclease
CLI98_RS14380	COG0737	Belongs to the 5'-nucleotidase family
CLI98_RS14385	COG3764	Sortase (surface protein transpeptidase)
CLI98_RS14390	COG0564	pseudouridine synthase activity
CLI98_RS14400	COG0517	IMP dehydrogenase activity
CLI98_RS14405	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CLI98_RS14410	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CLI98_RS14410	COG3153	acetyltransferase
CLI98_RS14415	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CLI98_RS14420	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
CLI98_RS14425	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CLI98_RS14435	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CLI98_RS14440	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CLI98_RS14445	COG2203	Gaf domain
CLI98_RS14445	COG4585	Histidine kinase
CLI98_RS14450	COG2197	response regulator
CLI98_RS14455	COG0431	NADPH-dependent FMN reductase
CLI98_RS14470	COG0791	NLP P60 protein
CLI98_RS14470	COG1388	LysM domain
CLI98_RS14475	COG1959	2 iron, 2 sulfur cluster binding
CLI98_RS14485	COG0668	transmembrane transport
CLI98_RS14490	COG2719	SpoVR family
CLI98_RS14495	COG1785	Belongs to the alkaline phosphatase family
CLI98_RS14500	COG0791	NLP P60 protein
CLI98_RS14500	COG1388	LysM domain
CLI98_RS14505	COG0583	DNA-binding transcription factor activity
CLI98_RS14510	COG0372	Belongs to the citrate synthase family
CLI98_RS14515	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS14520	COG0531	amino acid
CLI98_RS14525	COG0733	neurotransmitter:sodium symporter activity
CLI98_RS14540	COG1595	DNA-templated transcription, initiation
CLI98_RS14545	COG0204	Acyl-transferase
CLI98_RS14550	COG1253	flavin adenine dinucleotide binding
CLI98_RS14555	COG0789	Transcriptional regulator
CLI98_RS14560	COG0436	Aminotransferase
CLI98_RS14565	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CLI98_RS14570	COG1253	flavin adenine dinucleotide binding
CLI98_RS14575	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CLI98_RS14580	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CLI98_RS14585	COG0584	glycerophosphoryl diester phosphodiesterase
CLI98_RS14595	COG0668	transmembrane transport
CLI98_RS14600	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CLI98_RS14605	COG0726	polysaccharide deacetylase
CLI98_RS14610	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CLI98_RS14615	COG3226	Transcriptional regulator
CLI98_RS14625	COG0589	response to stress
CLI98_RS14630	COG1132	(ABC) transporter
CLI98_RS14635	COG1132	(ABC) transporter
CLI98_RS14640	COG0702	epimerase
CLI98_RS14665	COG0189	ligase activity
CLI98_RS14670	COG0189	ligase activity
CLI98_RS14685	COG4335	DNA alkylation repair
CLI98_RS14690	COG0561	phosphatase activity
CLI98_RS14695	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CLI98_RS14705	COG0475	glutathione-regulated potassium exporter activity
CLI98_RS14710	COG0490	domain, Protein
CLI98_RS14720	COG1024	Enoyl-CoA hydratase
CLI98_RS14730	COG4152	abc transporter atp-binding protein
CLI98_RS14735	COG1668	transmembrane transport
CLI98_RS14740	COG0420	3'-5' exonuclease activity
CLI98_RS14745	COG4717	serine-type aminopeptidase activity
CLI98_RS14760	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CLI98_RS14800	COG4980	gas vesicle protein
CLI98_RS14815	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CLI98_RS14820	COG0537	adenosine 5'-monophosphoramidase activity
CLI98_RS14825	COG1131	(ABC) transporter
CLI98_RS14830	COG4473	ABC transporter
CLI98_RS14840	COG1473	amidohydrolase
CLI98_RS14845	COG3069	C4-dicarboxylate transmembrane transporter activity
CLI98_RS14850	COG2329	Antibiotic biosynthesis monooxygenase
CLI98_RS14855	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CLI98_RS14865	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CLI98_RS14870	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
CLI98_RS14875	COG1309	transcriptional regulator
CLI98_RS14880	COG1511	domain protein
CLI98_RS14885	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CLI98_RS14895	COG1363	Peptidase, m42
CLI98_RS14900	COG1301	dicarboxylic acid transport
CLI98_RS14910	COG1234	tRNA 3'-trailer cleavage
CLI98_RS14915	COG0095	Lipoate-protein ligase
CLI98_RS14920	COG0702	epimerase
CLI98_RS14925	COG0318	PFAM AMP-dependent synthetase and ligase
CLI98_RS14935	COG0501	Belongs to the peptidase M48B family
CLI98_RS14940	COG1404	Belongs to the peptidase S8 family
CLI98_RS14950	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
CLI98_RS14955	COG0406	alpha-ribazole phosphatase activity
CLI98_RS14960	COG0183	Belongs to the thiolase family
CLI98_RS14965	COG0318	PFAM AMP-dependent synthetase and ligase
CLI98_RS14970	COG1268	BioY protein
CLI98_RS14975	COG0840	transmembrane signaling receptor activity
CLI98_RS14980	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CLI98_RS14980	COG0723	plastoquinol--plastocyanin reductase activity
CLI98_RS14985	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS14995	COG4903	ComK protein
CLI98_RS15000	COG5646	InterPro IPR014922
CLI98_RS15005	COG5646	InterPro IPR014922
CLI98_RS15030	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CLI98_RS15045	COG0398	Pfam SNARE associated Golgi protein
CLI98_RS15050	COG0681	Belongs to the peptidase S26 family
CLI98_RS15055	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CLI98_RS15060	COG1846	Transcriptional regulator
CLI98_RS15065	COG3180	Ammonia monooxygenase
CLI98_RS15070	COG2814	Major facilitator Superfamily
CLI98_RS15080	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
CLI98_RS15085	COG2323	membrane
CLI98_RS15100	COG0420	3'-5' exonuclease activity
CLI98_RS15105	COG0419	ATPase involved in DNA repair
CLI98_RS15110	COG1403	HNH endonuclease
CLI98_RS15150	COG0179	Fumarylacetoacetate (FAA) hydrolase
CLI98_RS15165	COG0367	asparagine synthase
CLI98_RS15170	COG1562	ergosterol biosynthetic process
CLI98_RS15175	COG0534	Mate efflux family protein
CLI98_RS15180	COG1917	Cupin 2, conserved barrel domain protein
CLI98_RS15180	COG2207	Transcriptional regulator
CLI98_RS15185	COG1609	Transcriptional regulator
CLI98_RS15190	COG0673	inositol 2-dehydrogenase activity
CLI98_RS15195	COG2318	DinB family
CLI98_RS15200	COG1357	PFAM Pentapeptide repeats (8 copies)
CLI98_RS15205	COG2153	protein acetylation
CLI98_RS15210	COG0646	methionine synthase
CLI98_RS15210	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CLI98_RS15220	COG2996	Protein conserved in bacteria
CLI98_RS15225	COG1744	ABC transporter substrate-binding protein PnrA-like
CLI98_RS15230	COG0840	transmembrane signaling receptor activity
CLI98_RS15235	COG2124	cytochrome p450
CLI98_RS15245	COG1307	EDD domain protein, DegV family
CLI98_RS15250	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLI98_RS15265	COG0561	phosphatase activity
CLI98_RS15270	COG1073	alpha beta
CLI98_RS15275	COG2151	metal-sulfur cluster biosynthetic enzyme
CLI98_RS15285	COG0277	FAD linked oxidase domain protein
CLI98_RS15290	COG2271	Major facilitator Superfamily
CLI98_RS15300	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CLI98_RS15310	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CLI98_RS15315	COG0505	Belongs to the CarA family
CLI98_RS15320	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CLI98_RS15325	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CLI98_RS15345	COG2267	carboxylic ester hydrolase activity
CLI98_RS15355	COG1744	ABC transporter substrate-binding protein PnrA-like
CLI98_RS15370	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CLI98_RS15375	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CLI98_RS15380	COG5504	Zn-dependent protease
CLI98_RS15385	COG0444	Belongs to the ABC transporter superfamily
CLI98_RS15390	COG4608	Belongs to the ABC transporter superfamily
CLI98_RS15400	COG0601	transmembrane transport
CLI98_RS15405	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLI98_RS15415	COG0180	Tryptophanyl-tRNA synthetase
CLI98_RS15420	COG4166	transmembrane transport
CLI98_RS15425	COG0601	transmembrane transport
CLI98_RS15430	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLI98_RS15435	COG0444	Belongs to the ABC transporter superfamily
CLI98_RS15440	COG4608	Belongs to the ABC transporter superfamily
CLI98_RS15450	COG0456	acetyltransferase
CLI98_RS15455	COG1393	Belongs to the ArsC family
CLI98_RS15460	COG0861	Integral membrane protein TerC family
CLI98_RS15465	COG4862	establishment of competence for transformation
CLI98_RS15470	COG4469	Competence protein
CLI98_RS15475	COG1164	Oligoendopeptidase f
CLI98_RS15485	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CLI98_RS15490	COG2346	COG2346, Truncated hemoglobins
CLI98_RS15495	COG0741	lytic transglycosylase activity
CLI98_RS15500	COG4116	CYTH
CLI98_RS15510	COG2357	RelA SpoT domain protein
CLI98_RS15515	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CLI98_RS15520	COG0564	pseudouridine synthase activity
CLI98_RS15535	COG0475	glutathione-regulated potassium exporter activity
CLI98_RS15535	COG0569	domain protein
CLI98_RS15540	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CLI98_RS15545	COG0352	thiamine-phosphate diphosphorylase activity
CLI98_RS15550	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CLI98_RS15555	COG2104	thiamine diphosphate biosynthetic process
CLI98_RS15565	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CLI98_RS15570	COG0351	phosphomethylpyrimidine kinase
CLI98_RS15575	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CLI98_RS15630	COG0210	DNA helicase
CLI98_RS15650	COG1131	(ABC) transporter
CLI98_RS15660	COG2153	protein acetylation
CLI98_RS15670	COG2382	esterase
CLI98_RS15675	COG0626	cystathionine gamma-synthase activity
CLI98_RS15680	COG0626	cystathionine gamma-synthase activity
CLI98_RS15715	COG0135	phosphoribosylanthranilate isomerase activity
CLI98_RS15745	COG1595	DNA-templated transcription, initiation
CLI98_RS15770	COG2367	Beta-lactamase
CLI98_RS15775	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CLI98_RS15780	COG0477	Major facilitator Superfamily
CLI98_RS15785	COG1846	Transcriptional regulator
CLI98_RS15795	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
CLI98_RS15800	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CLI98_RS15805	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
CLI98_RS15810	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLI98_RS15810	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLI98_RS15815	COG1447	Phosphotransferase system cellobiose-specific component IIA
CLI98_RS15850	COG1285	pathogenesis
CLI98_RS15865	COG2205	protein histidine kinase activity
CLI98_RS15875	COG3383	formate dehydrogenase (NAD+) activity
CLI98_RS15880	COG2427	Protein of unknown function (DUF1641)
CLI98_RS15885	COG2124	cytochrome p450
CLI98_RS15890	COG1819	glycosyl
CLI98_RS15900	COG1587	Uroporphyrinogen-III synthase
CLI98_RS15905	COG0390	transport system, permease component
CLI98_RS15910	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CLI98_RS15915	COG0697	spore germination
CLI98_RS15920	COG4297	protein containing double-stranded beta helix domain
CLI98_RS15930	COG1252	NADH dehydrogenase
CLI98_RS15940	COG2211	Major facilitator Superfamily
CLI98_RS15945	COG1609	Transcriptional regulator
CLI98_RS15950	COG0246	Mannitol dehydrogenase
CLI98_RS15955	COG2721	sulfolactate sulfo-lyase activity
CLI98_RS15960	COG0730	response to heat
CLI98_RS15965	COG2318	DinB family
CLI98_RS15970	COG0457	Tetratricopeptide repeat
CLI98_RS15980	COG5632	N-Acetylmuramoyl-L-alanine amidase
CLI98_RS15980	COG3409	Peptidoglycan-binding domain 1 protein
CLI98_RS15980	COG1388	LysM domain
CLI98_RS15990	COG4195	phage-related replication protein
CLI98_RS15995	COG2856	Zn peptidase
CLI98_RS16000	COG1396	sequence-specific DNA binding
CLI98_RS16010	COG1522	sequence-specific DNA binding
CLI98_RS16015	COG1484	DNA-dependent DNA replication
CLI98_RS16035	COG1595	DNA-templated transcription, initiation
CLI98_RS16040	COG5484	DNA packaging
CLI98_RS16040	COG3728	DNA packaging
CLI98_RS16045	COG1783	phage Terminase large subunit
CLI98_RS16050	COG5518	Phage portal protein
CLI98_RS16055	COG0338	D12 class N6 adenine-specific DNA methyltransferase
CLI98_RS16060	COG4653	Phage capsid family
CLI98_RS16110	COG3953	SLT domain
CLI98_RS16110	COG5412	phage tail tape measure protein
CLI98_RS16110	COG3953	SLT domain
CLI98_RS16110	COG5412	phage tail tape measure protein
CLI98_RS16110	COG5412	phage tail tape measure protein
CLI98_RS16110	COG3953	SLT domain
CLI98_RS16115	COG1652	LysM domain
CLI98_RS16120	COG4193	domain, Protein
CLI98_RS16130	COG3628	GPW Gp25 family protein
CLI98_RS16135	COG3299	homolog of phage Mu protein gp47
CLI98_RS16140	COG3778	Protein conserved in bacteria
CLI98_RS16180	COG5632	N-Acetylmuramoyl-L-alanine amidase
CLI98_RS16180	COG3409	Peptidoglycan-binding domain 1 protein
CLI98_RS16195	COG0306	phosphate transporter
CLI98_RS16200	COG1392	Phosphate transport regulator
CLI98_RS16205	COG0531	amino acid
CLI98_RS16210	COG0346	lactoylglutathione lyase activity
CLI98_RS16215	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CLI98_RS16220	COG0463	Glycosyl transferase, family 2
CLI98_RS16230	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CLI98_RS16235	COG0477	Major facilitator Superfamily
CLI98_RS16240	COG2362	D-Aminopeptidase
CLI98_RS16245	COG0601	transmembrane transport
CLI98_RS16250	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLI98_RS16255	COG0444	Belongs to the ABC transporter superfamily
CLI98_RS16260	COG4166	transmembrane transport
CLI98_RS16265	COG1619	proteins homologs of microcin C7 resistance protein MccF
CLI98_RS16270	COG4948	Mandelate Racemase Muconate Lactonizing
CLI98_RS16275	COG0791	NLP P60 protein
CLI98_RS16280	COG4608	Belongs to the ABC transporter superfamily
CLI98_RS16285	COG2706	6-phosphogluconolactonase activity
CLI98_RS16290	COG1834	amidinotransferase
CLI98_RS16295	COG1607	acyl-coa hydrolase
CLI98_RS16300	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLI98_RS16305	COG2076	Multidrug Resistance protein
CLI98_RS16310	COG2076	Multidrug Resistance protein
CLI98_RS16315	COG0788	formyltetrahydrofolate deformylase activity
CLI98_RS16320	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CLI98_RS16330	COG1764	response to oxidative stress
CLI98_RS16335	COG1846	Transcriptional regulator
CLI98_RS16340	COG1764	response to oxidative stress
CLI98_RS16355	COG0457	Tetratricopeptide repeat
CLI98_RS16355	COG0463	Glycosyl transferase, family 2
CLI98_RS16365	COG2814	Major facilitator Superfamily
CLI98_RS16380	COG1404	Belongs to the peptidase S8 family
CLI98_RS16385	COG1366	Belongs to the anti-sigma-factor antagonist family
CLI98_RS16390	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLI98_RS16395	COG1122	ATPase activity
CLI98_RS16400	COG4721	ABC-type cobalt transport system, permease component
CLI98_RS16405	COG3858	chitin binding
CLI98_RS16405	COG1388	LysM domain
CLI98_RS16420	COG2239	Acts as a magnesium transporter
CLI98_RS16425	COG0789	Transcriptional regulator
CLI98_RS16440	COG1846	Transcriptional regulator
CLI98_RS16445	COG0726	polysaccharide deacetylase
CLI98_RS16450	COG3285	dna ligase
CLI98_RS16450	COG1793	dna ligase
CLI98_RS16455	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
CLI98_RS16460	COG0586	Pfam SNARE associated Golgi protein
CLI98_RS16465	COG0861	Integral membrane protein TerC family
CLI98_RS16470	COG1191	sigma factor activity
CLI98_RS16495	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CLI98_RS16500	COG2323	membrane
CLI98_RS16510	COG3594	Acyltransferase
CLI98_RS16515	COG5002	protein histidine kinase activity
CLI98_RS16520	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CLI98_RS16535	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CLI98_RS16540	COG0436	Aminotransferase
CLI98_RS16570	COG3852	Histidine kinase
CLI98_RS16575	COG1846	Transcriptional regulator
CLI98_RS16580	COG1360	Flagellar Motor Protein
CLI98_RS16585	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CLI98_RS16590	COG0542	response to heat
CLI98_RS16600	COG3949	Membrane
CLI98_RS16615	COG0720	synthase
CLI98_RS16620	COG0602	queuosine metabolic process
CLI98_RS16625	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CLI98_RS16630	COG1733	regulation of RNA biosynthetic process
CLI98_RS16635	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS16650	COG4873	Protein conserved in bacteria
CLI98_RS16660	COG3773	Cell wall hydrolase
CLI98_RS16665	COG2244	polysaccharide biosynthetic process
CLI98_RS16670	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI98_RS16675	COG2217	Heavy metal translocating P-type atpase
CLI98_RS16680	COG0006	proline dipeptidase activity
CLI98_RS16685	COG1609	Transcriptional regulator
CLI98_RS16690	COG3711	transcriptional antiterminator
CLI98_RS16695	COG2190	(PTS) system
CLI98_RS16695	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI98_RS16695	COG1263	PTS System
CLI98_RS16700	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI98_RS16705	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLI98_RS16715	COG1533	DNA photolyase activity
CLI98_RS16720	COG0840	transmembrane signaling receptor activity
CLI98_RS16725	COG2084	Dehydrogenase
CLI98_RS16735	COG0347	Belongs to the P(II) protein family
CLI98_RS16740	COG2340	Cysteine-rich secretory protein family
CLI98_RS16745	COG0768	penicillin binding
CLI98_RS16750	COG4191	Histidine kinase
CLI98_RS16755	COG0436	Aminotransferase
CLI98_RS16770	COG0835	chemotaxis
CLI98_RS16770	COG0784	Response regulator, receiver
CLI98_RS16780	COG2814	Major facilitator Superfamily
CLI98_RS16785	COG1376	ErfK ybiS ycfS ynhG family protein
CLI98_RS16790	COG1408	metallophosphoesterase
CLI98_RS16795	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS16805	COG2200	EAL domain
CLI98_RS16810	COG4703	Protein of unknown function (DUF1797)
CLI98_RS16815	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
CLI98_RS16825	COG0517	IMP dehydrogenase activity
CLI98_RS16830	COG0583	DNA-binding transcription factor activity
CLI98_RS16835	COG0716	FMN binding
CLI98_RS16845	COG0716	FMN binding
CLI98_RS16865	COG0668	transmembrane transport
CLI98_RS16870	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI98_RS16890	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CLI98_RS16895	COG0303	'Molybdopterin
CLI98_RS16900	COG1763	Mo-molybdopterin cofactor biosynthetic process
CLI98_RS16905	COG0314	molybdopterin synthase activity
CLI98_RS16910	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CLI98_RS16920	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLI98_RS16925	COG1136	(ABC) transporter
CLI98_RS16930	COG0577	efflux transmembrane transporter activity
CLI98_RS16935	COG1349	DNA-binding transcription factor activity
CLI98_RS16940	COG1105	Belongs to the carbohydrate kinase PfkB family
CLI98_RS16945	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLI98_RS16945	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLI98_RS16945	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI98_RS16950	COG0681	Belongs to the peptidase S26 family
CLI98_RS16960	COG0488	(ABC) transporter
CLI98_RS16965	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLI98_RS16970	COG2309	aminopeptidase activity
CLI98_RS16980	COG1077	Cell shape determining protein MreB Mrl
CLI98_RS16990	COG2002	toxin-antitoxin pair type II binding
CLI98_RS16995	COG3852	Histidine kinase
CLI98_RS17000	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
CLI98_RS17000	COG2105	PFAM AIG2 family protein
CLI98_RS17005	COG0569	domain protein
CLI98_RS17015	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLI98_RS17030	COG0561	phosphatase activity
CLI98_RS17035	COG0242	peptide deformylase activity
CLI98_RS17045	COG0497	DNA recombination
CLI98_RS17060	COG4221	oxidoreductase activity
CLI98_RS17060	COG3321	synthase
CLI98_RS17060	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS17060	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS17065	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS17065	COG0300	oxidoreductase activity
CLI98_RS17065	COG4221	oxidoreductase activity
CLI98_RS17065	COG3321	synthase
CLI98_RS17070	COG3321	synthase
CLI98_RS17070	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS17070	COG4221	oxidoreductase activity
CLI98_RS17070	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS17075	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS17075	COG0300	oxidoreductase activity
CLI98_RS17075	COG3321	synthase
CLI98_RS17075	COG4221	oxidoreductase activity
CLI98_RS17080	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS17080	COG0300	oxidoreductase activity
CLI98_RS17080	COG4221	oxidoreductase activity
CLI98_RS17080	COG3321	synthase
CLI98_RS17085	COG3321	synthase
CLI98_RS17085	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS17085	COG4221	oxidoreductase activity
CLI98_RS17085	COG0300	oxidoreductase activity
CLI98_RS17090	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS17090	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS17090	COG3321	synthase
CLI98_RS17090	COG4221	oxidoreductase activity
CLI98_RS17095	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CLI98_RS17100	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CLI98_RS17105	COG0022	dehydrogenase e1 component
CLI98_RS17110	COG0508	dehydrogenase complex catalyzes the overall conversion of
CLI98_RS17115	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CLI98_RS17120	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI98_RS17135	COG1982	Orn Lys Arg decarboxylase major
CLI98_RS17160	COG0483	inositol monophosphate 1-phosphatase activity
CLI98_RS17170	COG3227	Zinc metalloprotease (Elastase)
CLI98_RS17185	COG1595	DNA-templated transcription, initiation
CLI98_RS17205	COG1217	gtp-binding protein TYPA
CLI98_RS17215	COG4896	Protein conserved in bacteria
CLI98_RS17225	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CLI98_RS17230	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CLI98_RS17235	COG2066	Belongs to the glutaminase family
CLI98_RS17245	COG0772	Belongs to the SEDS family
CLI98_RS17250	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
CLI98_RS17265	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CLI98_RS17265	COG2010	Cytochrome c
CLI98_RS17270	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CLI98_RS17275	COG1845	cytochrome c oxidase, subunit III
CLI98_RS17280	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CLI98_RS17285	COG3336	cytochrome c oxidase
CLI98_RS17295	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
CLI98_RS17300	COG2340	Cysteine-rich secretory protein family
CLI98_RS17315	COG3679	Belongs to the UPF0342 family
CLI98_RS17325	COG0742	ribosomal rna small subunit methyltransferase
CLI98_RS17335	COG3314	Sporulation integral membrane protein YlbJ
CLI98_RS17340	COG1752	Esterase of the alpha-beta hydrolase superfamily
CLI98_RS17345	COG3480	Lon protease (S16) C-terminal proteolytic domain
CLI98_RS17355	COG1399	metal-binding, possibly nucleic acid-binding protein
CLI98_RS17375	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLI98_RS17395	COG4839	cell division protein FtsL
CLI98_RS17400	COG0768	penicillin binding
CLI98_RS17405	COG0768	penicillin binding
CLI98_RS17425	COG0772	Belongs to the SEDS family
CLI98_RS17440	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CLI98_RS17445	COG0849	cell division
CLI98_RS17450	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CLI98_RS17455	COG1404	Belongs to the peptidase S8 family
CLI98_RS17455	COG4412	M6 family metalloprotease domain protein
CLI98_RS17465	COG1191	sigma factor activity
CLI98_RS17470	COG1191	sigma factor activity
CLI98_RS17475	COG1119	ATPase activity
CLI98_RS17480	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CLI98_RS17485	COG1873	PFAM PRC-barrel domain
CLI98_RS17490	COG1496	oxidoreductase activity
CLI98_RS17495	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CLI98_RS17505	COG0762	integral membrane protein
CLI98_RS17510	COG2302	S4 RNA-binding domain
CLI98_RS17515	COG3599	regulation of cell shape
CLI98_RS17525	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CLI98_RS17530	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CLI98_RS17540	COG0564	pseudouridine synthase activity
CLI98_RS17550	COG2233	PERMEase
CLI98_RS17560	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CLI98_RS17565	COG0505	Belongs to the CarA family
CLI98_RS17570	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CLI98_RS17585	COG0284	orotidine-5'-phosphate decarboxylase activity
CLI98_RS17590	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CLI98_RS17600	COG0306	phosphate transporter
CLI98_RS17615	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CLI98_RS17620	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
CLI98_RS17625	COG1648	precorrin-2 dehydrogenase activity
CLI98_RS17640	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CLI98_RS17645	COG1561	YicC-like family, N-terminal region
CLI98_RS17655	COG0194	GDP metabolic process
CLI98_RS17665	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CLI98_RS17670	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CLI98_RS17675	COG0242	peptide deformylase activity
CLI98_RS17685	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CLI98_RS17685	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CLI98_RS17695	COG0631	protein serine/threonine phosphatase activity
CLI98_RS17700	COG2815	serine threonine protein kinase
CLI98_RS17700	COG0515	serine threonine protein kinase
CLI98_RS17710	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CLI98_RS17715	COG1564	THIamine pyrophosphokinase
CLI98_RS17730	COG1302	Protein conserved in bacteria
CLI98_RS17735	COG1461	Dihydroxyacetone kinase
CLI98_RS17740	COG1760	l-serine dehydratase
CLI98_RS17745	COG1760	l-serine dehydratase
CLI98_RS17750	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CLI98_RS17765	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CLI98_RS17770	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS17785	COG1196	nuclear chromosome segregation
CLI98_RS17790	COG0552	protein localization to endoplasmic reticulum
CLI98_RS17805	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CLI98_RS17815	COG1837	Belongs to the UPF0109 family
CLI98_RS17840	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CLI98_RS17855	COG2257	FlhB HrpN YscU SpaS Family
CLI98_RS17865	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CLI98_RS17870	COG0758	DNA mediated transformation
CLI98_RS17875	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CLI98_RS17885	COG4974	Belongs to the 'phage' integrase family
CLI98_RS17905	COG1815	bacterial-type flagellum-dependent cell motility
CLI98_RS17910	COG1558	bacterial-type flagellum-dependent cell motility
CLI98_RS17915	COG1677	Flagellar hook-basal body complex protein FliE
CLI98_RS17920	COG1766	The M ring may be actively involved in energy transduction
CLI98_RS17925	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CLI98_RS17930	COG1317	bacterial-type flagellum organization
CLI98_RS17935	COG1157	protein secretion by the type III secretion system
CLI98_RS17940	COG2882	bacterial-type flagellum organization
CLI98_RS17945	COG3334	PFAM MgtE intracellular
CLI98_RS17950	COG3144	bacterial-type flagellum assembly
CLI98_RS17955	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CLI98_RS17960	COG4786	Flagellar basal body rod
CLI98_RS17965	COG1582	Flagellar protein (FlbD)
CLI98_RS17970	COG1580	Controls the rotational direction of flagella during chemotaxis
CLI98_RS17975	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CLI98_RS17980	COG1776	CheC inhibitor of MCP methylation
CLI98_RS17980	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CLI98_RS17985	COG2201	protein-glutamate methylesterase activity
CLI98_RS17990	COG3190	flagellar
CLI98_RS17995	COG1338	Plays a role in the flagellum-specific transport system
CLI98_RS18000	COG1987	bacterial-type flagellum assembly
CLI98_RS18005	COG1684	flagellar biosynthetic protein fliR
CLI98_RS18010	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CLI98_RS18015	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CLI98_RS18020	COG1419	protein localization to endoplasmic reticulum
CLI98_RS18025	COG0455	bacterial-type flagellum organization
CLI98_RS18030	COG2201	protein-glutamate methylesterase activity
CLI98_RS18035	COG2198	Histidine kinase
CLI98_RS18035	COG0643	Histidine kinase
CLI98_RS18040	COG0835	chemotaxis
CLI98_RS18045	COG1776	CheC inhibitor of MCP methylation
CLI98_RS18055	COG1191	sigma factor activity
CLI98_RS18085	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CLI98_RS18090	COG4589	Belongs to the CDS family
CLI98_RS18100	COG0750	zinc metalloprotease
CLI98_RS18110	COG2176	DNA-directed DNA polymerase activity
CLI98_RS18120	COG0195	Participates in both transcription termination and antitermination
CLI98_RS18125	COG2740	Nucleic-acid-binding protein implicated in transcription termination
CLI98_RS18130	COG1358	cellular component organization or biogenesis
CLI98_RS18140	COG1550	Protein conserved in bacteria
CLI98_RS18155	COG0196	riboflavin kinase activity
CLI98_RS18170	COG0726	polysaccharide deacetylase
CLI98_RS18175	COG0612	Peptidase, M16
CLI98_RS18180	COG1873	PFAM PRC-barrel domain
CLI98_RS18185	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLI98_RS18190	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CLI98_RS18195	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CLI98_RS18200	COG0527	aspartate kinase activity
CLI98_RS18210	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLI98_RS18215	COG0740	serine-type endopeptidase activity
CLI98_RS18225	COG1674	ftsk spoiiie
CLI98_RS18225	COG4980	gas vesicle protein
CLI98_RS18230	COG2188	Transcriptional regulator
CLI98_RS18235	COG2814	Major facilitator Superfamily
CLI98_RS18240	COG1846	Transcriptional regulator
CLI98_RS18245	COG1033	growth of symbiont in host cell
CLI98_RS18245	COG2409	Drug exporters of the RND superfamily
CLI98_RS18250	COG0612	Peptidase, M16
CLI98_RS18255	COG0612	Peptidase, M16
CLI98_RS18260	COG0300	oxidoreductase activity
CLI98_RS18275	COG1426	Protein conserved in bacteria
CLI98_RS18280	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CLI98_RS18295	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CLI98_RS18305	COG1692	metallophosphoesterase
CLI98_RS18310	COG2359	stage V sporulation protein S
CLI98_RS18330	COG4550	Control of competence regulator ComK, YlbF/YmcA
CLI98_RS18410	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS18415	COG3425	synthase
CLI98_RS18420	COG1024	Enoyl-CoA hydratase
CLI98_RS18425	COG1024	Enoyl-CoA hydratase
CLI98_RS18430	COG3321	synthase
CLI98_RS18430	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS18430	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS18430	COG0300	oxidoreductase activity
CLI98_RS18430	COG0318	PFAM AMP-dependent synthetase and ligase
CLI98_RS18435	COG4221	oxidoreductase activity
CLI98_RS18435	COG3321	synthase
CLI98_RS18435	COG0300	oxidoreductase activity
CLI98_RS18435	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS18440	COG3321	synthase
CLI98_RS18440	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS18440	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLI98_RS18440	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS18440	COG3321	synthase
CLI98_RS18440	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS18440	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLI98_RS18440	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS18440	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS18440	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS18445	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS18445	COG3321	synthase
CLI98_RS18445	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS18445	COG4221	oxidoreductase activity
CLI98_RS18450	COG3321	synthase
CLI98_RS18450	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
CLI98_RS18450	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CLI98_RS18450	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI98_RS18455	COG2124	cytochrome p450
CLI98_RS18460	COG3209	COG3209 Rhs family protein
CLI98_RS18465	COG3619	membrane
CLI98_RS18475	COG1404	Belongs to the peptidase S8 family
CLI98_RS18485	COG4195	phage-related replication protein
CLI98_RS18490	COG1764	response to oxidative stress
CLI98_RS18500	COG2076	Multidrug Resistance protein
CLI98_RS18540	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLI98_RS18545	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLI98_RS18550	COG4112	unkown
CLI98_RS18555	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLI98_RS18565	COG0464	growth
CLI98_RS18570	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CLI98_RS18575	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
CLI98_RS18580	COG0789	Transcriptional regulator
CLI98_RS18585	COG0174	glutamine synthetase
CLI98_RS18625	COG2211	Major facilitator Superfamily
CLI98_RS18630	COG3507	Belongs to the glycosyl hydrolase 43 family
CLI98_RS18645	COG1070	Carbohydrate kinase
CLI98_RS18650	COG0574	Belongs to the PEP-utilizing enzyme family
CLI98_RS18650	COG3848	Pyruvate phosphate dikinase
CLI98_RS18680	COG2378	regulation of single-species biofilm formation
CLI98_RS18685	COG2318	DinB family
CLI98_RS18690	COG1064	alcohol dehydrogenase
CLI98_RS18715	COG0456	acetyltransferase
CLI98_RS18720	COG5444	nuclease activity
CLI98_RS18770	COG3397	chitin binding
CLI98_RS18780	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLI98_RS18790	COG5434	Belongs to the glycosyl hydrolase 28 family
CLI98_RS18800	COG0756	dUTP diphosphatase activity
CLI98_RS18805	COG4195	phage-related replication protein
CLI98_RS18835	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CLI98_RS18845	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CLI98_RS18865	COG0785	Cytochrome C biogenesis protein
CLI98_RS18870	COG2201	protein-glutamate methylesterase activity
CLI98_RS18875	COG4846	Membrane protein involved in cytochrome C biogenesis
CLI98_RS18885	COG0071	Belongs to the small heat shock protein (HSP20) family
CLI98_RS18900	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CLI98_RS18905	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI98_RS18925	COG0824	Thioesterase
CLI98_RS18935	COG4841	protein insertion into membrane
CLI98_RS18945	COG1832	CoA-binding protein
CLI98_RS18950	COG0187	DNA topoisomerase II activity
CLI98_RS18955	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLI98_RS18965	COG1115	amino acid carrier protein
CLI98_RS18975	COG1063	alcohol dehydrogenase
CLI98_RS18980	COG0800	Aldolase
CLI98_RS18985	COG1312	Catalyzes the dehydration of D-mannonate
CLI98_RS18990	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS18995	COG1609	Transcriptional regulator
CLI98_RS19000	COG2271	Major facilitator Superfamily
CLI98_RS19045	COG2205	protein histidine kinase activity
CLI98_RS19050	COG0745	RESPONSE REGULATOR receiver
CLI98_RS19060	COG3507	Belongs to the glycosyl hydrolase 43 family
CLI98_RS19085	COG1028	Short-chain dehydrogenase reductase Sdr
CLI98_RS19090	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CLI98_RS19095	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CLI98_RS19100	COG2610	gluconate transmembrane transporter activity
CLI98_RS19105	COG2124	cytochrome p450
CLI98_RS19125	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CLI98_RS19135	COG2246	polysaccharide biosynthetic process
CLI98_RS19140	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CLI98_RS19145	COG0586	Pfam SNARE associated Golgi protein
CLI98_RS19150	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CLI98_RS19155	COG1024	Enoyl-CoA hydratase
CLI98_RS19160	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CLI98_RS19165	COG0511	ligase activity, forming carbon-carbon bonds
CLI98_RS19170	COG0439	Biotin carboxylase
CLI98_RS19175	COG0318	PFAM AMP-dependent synthetase and ligase
CLI98_RS19180	COG1960	acyl-CoA dehydrogenase activity
CLI98_RS19185	COG1649	PFAM Uncharacterised BCR, COG1649
CLI98_RS19195	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
CLI98_RS19195	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS19200	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS19205	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS19210	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS19215	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLI98_RS19220	COG2027	D-alanyl-D-alanine carboxypeptidase
CLI98_RS19225	COG2017	converts alpha-aldose to the beta-anomer
CLI98_RS19230	COG0534	Mate efflux family protein
CLI98_RS19245	COG0582	viral genome integration into host DNA
CLI98_RS19250	COG0166	Belongs to the GPI family
CLI98_RS19255	COG0405	Gamma-glutamyltransferase
CLI98_RS19260	COG2814	Major facilitator Superfamily
CLI98_RS19265	COG0640	Transcriptional regulator
CLI98_RS19270	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CLI98_RS19280	COG0604	alcohol dehydrogenase
CLI98_RS19290	COG0493	'glutamate synthase
CLI98_RS19295	COG0069	glutamate synthase activity
CLI98_RS19295	COG0070	glutamate synthase
CLI98_RS19295	COG0067	glutamate synthase
CLI98_RS19300	COG0583	DNA-binding transcription factor activity
CLI98_RS19305	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CLI98_RS19320	COG0300	oxidoreductase activity
CLI98_RS19325	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
CLI98_RS19335	COG2814	Major facilitator Superfamily
CLI98_RS19340	COG1070	Carbohydrate kinase
CLI98_RS19345	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CLI98_RS19350	COG0243	molybdopterin cofactor binding
CLI98_RS19380	COG5444	nuclease activity
CLI98_RS19385	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLI98_RS19390	COG0662	Cupin 2, conserved barrel domain protein
CLI98_RS19390	COG2207	Transcriptional regulator
CLI98_RS19395	COG1309	transcriptional regulator
CLI98_RS19400	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLI98_RS19410	COG0640	Transcriptional regulator
CLI98_RS19415	COG0741	lytic transglycosylase activity
CLI98_RS19420	COG2322	membrane
CLI98_RS19435	COG1619	proteins homologs of microcin C7 resistance protein MccF
CLI98_RS19445	COG3584	3D domain protein
CLI98_RS19445	COG1388	LysM domain
CLI98_RS19450	COG0514	ATP-dependent DNA helicase (RecQ)
CLI98_RS19460	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CLI98_RS19465	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CLI98_RS19480	COG0071	Belongs to the small heat shock protein (HSP20) family
CLI98_RS19510	COG1012	belongs to the aldehyde dehydrogenase family
CLI98_RS19515	COG1657	PFAM Prenyltransferase squalene oxidase
CLI98_RS19520	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CLI98_RS19525	COG0733	neurotransmitter:sodium symporter activity
CLI98_RS19530	COG0385	Bile acid
CLI98_RS19535	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLI98_RS19540	COG0508	dehydrogenase complex catalyzes the overall conversion of
CLI98_RS19550	COG4548	von Willebrand factor, type A
CLI98_RS19555	COG0714	Associated with various cellular activities
CLI98_RS19560	COG2032	superoxide dismutase activity
CLI98_RS19565	COG0791	NLP P60 protein
CLI98_RS19565	COG1388	LysM domain
CLI98_RS19570	COG1819	glycosyl
CLI98_RS19575	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CLI98_RS19580	COG0534	Mate efflux family protein
CLI98_RS19585	COG1366	Belongs to the anti-sigma-factor antagonist family
CLI98_RS19590	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CLI98_RS19595	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CLI98_RS19605	COG2962	Rard protein
CLI98_RS19620	COG1942	4-Oxalocrotonate Tautomerase
CLI98_RS19630	COG1733	regulation of RNA biosynthetic process
CLI98_RS19635	COG0778	Nitroreductase
CLI98_RS19640	COG0400	carboxylic ester hydrolase activity
CLI98_RS19645	COG0346	lactoylglutathione lyase activity
CLI98_RS19655	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CLI98_RS19665	COG2723	6-phospho-beta-galactosidase activity
CLI98_RS19670	COG2188	Transcriptional regulator
CLI98_RS19675	COG0793	Belongs to the peptidase S41A family
CLI98_RS19675	COG3409	Peptidoglycan-binding domain 1 protein
CLI98_RS19680	COG2226	methyltransferase
CLI98_RS19690	COG1876	peptidase activity
CLI98_RS19710	COG0671	phosphoesterase, PA-phosphatase related
CLI98_RS19745	COG1509	lysine 2,3-aminomutase activity
CLI98_RS19750	COG0456	acetyltransferase