locus-tag class description CHH28_RS00005 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS00015 PF00873 AcrB/AcrD/AcrF family CHH28_RS00035 PF02580 D-Tyr-tRNA(Tyr) deacylase CHH28_RS00045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS00045 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS00045 PF00989 PAS fold CHH28_RS00050 PF00158 Sigma-54 interaction domain CHH28_RS00050 PF00072 Response regulator receiver domain CHH28_RS00050 PF02954 Bacterial regulatory protein, Fis family CHH28_RS00085 PF07963 Prokaryotic N-terminal methylation motif CHH28_RS00095 PF00482 Type II secretion system (T2SS), protein F CHH28_RS00100 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CHH28_RS00100 PF00437 Type II/IV secretion system protein CHH28_RS00110 PF13401 AAA domain CHH28_RS00110 PF01471 Putative peptidoglycan binding domain CHH28_RS00115 PF00263 Bacterial type II and III secretion system protein CHH28_RS00115 PF03958 Bacterial type II/III secretion system short domain CHH28_RS00135 PF00588 SpoU rRNA Methylase family CHH28_RS00140 PF07995 Glucose / Sorbosone dehydrogenase CHH28_RS00145 PF00899 ThiF family CHH28_RS00150 PF17827 PrmC N-terminal domain CHH28_RS00150 PF13847 Methyltransferase domain CHH28_RS00155 PF03462 PCRF domain CHH28_RS00155 PF00472 RF-1 domain CHH28_RS00160 PF01488 Shikimate / quinate 5-dehydrogenase CHH28_RS00160 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CHH28_RS00160 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CHH28_RS00170 PF03550 Outer membrane lipoprotein LolB CHH28_RS00175 PF00288 GHMP kinases N terminal domain CHH28_RS00175 PF08544 GHMP kinases C terminal CHH28_RS00185 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CHH28_RS00185 PF14572 Phosphoribosyl synthetase-associated domain CHH28_RS00190 PF01386 Ribosomal L25p family CHH28_RS00190 PF14693 Ribosomal protein TL5, C-terminal domain CHH28_RS00195 PF01195 Peptidyl-tRNA hydrolase CHH28_RS00200 PF01926 50S ribosome-binding GTPase CHH28_RS00200 PF06071 Protein of unknown function (DUF933) CHH28_RS00205 PF07690 Major Facilitator Superfamily CHH28_RS00210 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS00210 PF16295 Tetracyclin repressor-like, C-terminal domain CHH28_RS00220 PF00919 Uncharacterized protein family UPF0004 CHH28_RS00220 PF01938 TRAM domain CHH28_RS00220 PF04055 Radical SAM superfamily CHH28_RS00225 PF02562 PhoH-like protein CHH28_RS00230 PF02130 Uncharacterized protein family UPF0054 CHH28_RS00235 PF03471 Transporter associated domain CHH28_RS00235 PF00571 CBS domain CHH28_RS00240 PF00795 Carbon-nitrogen hydrolase CHH28_RS00245 PF07729 FCD domain CHH28_RS00245 PF00392 Bacterial regulatory proteins, gntR family CHH28_RS00255 PF00293 NUDIX domain CHH28_RS00260 PF01960 ArgJ family CHH28_RS00265 PF01043 SecA preprotein cross-linking domain CHH28_RS00265 PF07517 SecA DEAD-like domain CHH28_RS00265 PF07516 SecA Wing and Scaffold domain CHH28_RS00265 PF02810 SEC-C motif CHH28_RS00270 PF01476 LysM domain CHH28_RS00270 PF01551 Peptidase family M23 CHH28_RS00270 PF08525 Opacity-associated protein A N-terminal motif CHH28_RS00275 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CHH28_RS00280 PF12327 FtsZ family, C-terminal domain CHH28_RS00280 PF00091 Tubulin/FtsZ family, GTPase domain CHH28_RS00285 PF02491 SHS2 domain inserted in FTSA CHH28_RS00290 PF08478 POTRA domain, FtsQ-type CHH28_RS00290 PF03799 Cell division protein FtsQ CHH28_RS00295 PF07478 D-ala D-ala ligase C-terminus CHH28_RS00295 PF01820 D-ala D-ala ligase N-terminus CHH28_RS00300 PF01225 Mur ligase family, catalytic domain CHH28_RS00300 PF02875 Mur ligase family, glutamate ligase domain CHH28_RS00300 PF08245 Mur ligase middle domain CHH28_RS00305 PF04101 Glycosyltransferase family 28 C-terminal domain CHH28_RS00305 PF03033 Glycosyltransferase family 28 N-terminal domain CHH28_RS00310 PF01098 Cell cycle protein CHH28_RS00315 PF02875 Mur ligase family, glutamate ligase domain CHH28_RS00315 PF08245 Mur ligase middle domain CHH28_RS00320 PF00953 Glycosyl transferase family 4 CHH28_RS00320 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CHH28_RS00325 PF08245 Mur ligase middle domain CHH28_RS00325 PF02875 Mur ligase family, glutamate ligase domain CHH28_RS00325 PF01225 Mur ligase family, catalytic domain CHH28_RS00330 PF08245 Mur ligase middle domain CHH28_RS00330 PF02875 Mur ligase family, glutamate ligase domain CHH28_RS00330 PF01225 Mur ligase family, catalytic domain CHH28_RS00335 PF03717 Penicillin-binding Protein dimerisation domain CHH28_RS00335 PF00905 Penicillin binding protein transpeptidase domain CHH28_RS00345 PF01795 MraW methylase family CHH28_RS00350 PF02381 MraZ protein, putative antitoxin-like CHH28_RS00360 PF00202 Aminotransferase class-III CHH28_RS00365 PF00155 Aminotransferase class I and II CHH28_RS00370 PF08241 Methyltransferase domain CHH28_RS00370 PF12697 Alpha/beta hydrolase family CHH28_RS00385 PF00578 AhpC/TSA family CHH28_RS00385 PF10417 C-terminal domain of 1-Cys peroxiredoxin CHH28_RS00405 PF02885 Glycosyl transferase family, helical bundle domain CHH28_RS00405 PF00591 Glycosyl transferase family, a/b domain CHH28_RS00405 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CHH28_RS00410 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CHH28_RS00410 PF10996 Beta-Casp domain CHH28_RS00410 PF00753 Metallo-beta-lactamase superfamily CHH28_RS00430 PF00013 KH domain CHH28_RS00430 PF00575 S1 RNA binding domain CHH28_RS00430 PF03725 3' exoribonuclease family, domain 2 CHH28_RS00430 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CHH28_RS00430 PF01138 3' exoribonuclease family, domain 1 CHH28_RS00435 PF00312 Ribosomal protein S15 CHH28_RS00440 PF16198 tRNA pseudouridylate synthase B C-terminal domain CHH28_RS00440 PF01509 TruB family pseudouridylate synthase (N terminal domain) CHH28_RS00440 PF09157 Pseudouridine synthase II TruB, C-terminal CHH28_RS00445 PF02033 Ribosome-binding factor A CHH28_RS00450 PF00009 Elongation factor Tu GTP binding domain CHH28_RS00450 PF11987 Translation-initiation factor 2 CHH28_RS00450 PF08364 Bacterial translation initiation factor IF-2 associated region CHH28_RS00450 PF04760 Translation initiation factor IF-2, N-terminal region CHH28_RS00455 PF13184 NusA-like KH domain CHH28_RS00455 PF08529 NusA N-terminal domain CHH28_RS00455 PF00575 S1 RNA binding domain CHH28_RS00460 PF17384 RimP C-terminal SH3 domain CHH28_RS00460 PF02576 RimP N-terminal domain CHH28_RS00470 PF03840 Preprotein translocase SecG subunit CHH28_RS00475 PF00121 Triosephosphate isomerase CHH28_RS00480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHH28_RS00480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHH28_RS00480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHH28_RS00480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHH28_RS00485 PF00809 Pterin binding enzyme CHH28_RS00490 PF17862 AAA+ lid domain CHH28_RS00490 PF00004 ATPase family associated with various cellular activities (AAA) CHH28_RS00490 PF01434 Peptidase family M41 CHH28_RS00490 PF06480 FtsH Extracellular CHH28_RS00495 PF01728 FtsJ-like methyltransferase CHH28_RS00500 PF01985 CRS1 / YhbY (CRM) domain CHH28_RS00510 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CHH28_RS00510 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CHH28_RS00515 PF07977 FabA-like domain CHH28_RS00520 PF01272 Transcription elongation factor, GreA/GreB, C-term CHH28_RS00520 PF03449 Transcription elongation factor, N-terminal CHH28_RS00525 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CHH28_RS00525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHH28_RS00525 PF02142 MGS-like domain CHH28_RS00530 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CHH28_RS00530 PF00117 Glutamine amidotransferase class-I CHH28_RS00535 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS00540 PF05173 Dihydrodipicolinate reductase, C-terminus CHH28_RS00540 PF01113 Dihydrodipicolinate reductase, N-terminus CHH28_RS00545 PF00684 DnaJ central domain CHH28_RS00545 PF01556 DnaJ C terminal domain CHH28_RS00545 PF00226 DnaJ domain CHH28_RS00550 PF00012 Hsp70 protein CHH28_RS00555 PF01025 GrpE CHH28_RS00560 PF02463 RecF/RecN/SMC N terminal domain CHH28_RS00565 PF01475 Ferric uptake regulator family CHH28_RS00570 PF04355 SmpA / OmlA family CHH28_RS00575 PF03658 RnfH family Ubiquitin CHH28_RS00580 PF03364 Polyketide cyclase / dehydrase and lipid transport CHH28_RS00585 PF00209 Sodium:neurotransmitter symporter family CHH28_RS00590 PF01668 SmpB protein CHH28_RS00600 PF00144 Beta-lactamase CHH28_RS00620 PF00144 Beta-lactamase CHH28_RS00625 PF00072 Response regulator receiver domain CHH28_RS00625 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS00635 PF00141 Peroxidase CHH28_RS00645 PF00027 Cyclic nucleotide-binding domain CHH28_RS00645 PF13545 Crp-like helix-turn-helix domain CHH28_RS00665 PF04073 Aminoacyl-tRNA editing domain CHH28_RS00670 PF01037 Lrp/AsnC ligand binding domain CHH28_RS00670 PF13404 AsnC-type helix-turn-helix domain CHH28_RS00675 PF04958 Arginine N-succinyltransferase beta subunit CHH28_RS00680 PF04996 Succinylarginine dihydrolase CHH28_RS00700 PF00171 Aldehyde dehydrogenase family CHH28_RS00705 PF04958 Arginine N-succinyltransferase beta subunit CHH28_RS00710 PF00202 Aminotransferase class-III CHH28_RS00715 PF13404 AsnC-type helix-turn-helix domain CHH28_RS00715 PF01037 Lrp/AsnC ligand binding domain CHH28_RS00720 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CHH28_RS00725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHH28_RS00725 PF16886 ATPsynthase alpha/beta subunit N-term extension CHH28_RS00725 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHH28_RS00750 PF01813 ATP synthase subunit D CHH28_RS00755 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHH28_RS00755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHH28_RS00770 PF04055 Radical SAM superfamily CHH28_RS00800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS00800 PF03466 LysR substrate binding domain CHH28_RS00805 PF00732 GMC oxidoreductase CHH28_RS00805 PF05199 GMC oxidoreductase CHH28_RS00810 PF13378 Enolase C-terminal domain-like CHH28_RS00810 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CHH28_RS00815 PF00171 Aldehyde dehydrogenase family CHH28_RS00820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHH28_RS00825 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS00830 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS00830 PF12911 N-terminal TM domain of oligopeptide transport permease C CHH28_RS00835 PF00005 ABC transporter CHH28_RS00835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHH28_RS00850 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CHH28_RS00860 PF03441 FAD binding domain of DNA photolyase CHH28_RS00860 PF00875 DNA photolyase CHH28_RS00865 PF00875 DNA photolyase CHH28_RS00865 PF03441 FAD binding domain of DNA photolyase CHH28_RS00890 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS00895 PF00005 ABC transporter CHH28_RS00895 PF03459 TOBE domain CHH28_RS00905 PF00072 Response regulator receiver domain CHH28_RS00930 PF00583 Acetyltransferase (GNAT) family CHH28_RS00940 PF08502 LeuA allosteric (dimerisation) domain CHH28_RS00940 PF00682 HMGL-like CHH28_RS00965 PF00672 HAMP domain CHH28_RS00965 PF02743 Cache domain CHH28_RS00965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS00970 PF02743 Cache domain CHH28_RS00970 PF00672 HAMP domain CHH28_RS00970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS00985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS00990 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS00990 PF00072 Response regulator receiver domain CHH28_RS01005 PF13291 ACT domain CHH28_RS01005 PF04607 Region found in RelA / SpoT proteins CHH28_RS01005 PF02824 TGS domain CHH28_RS01025 PF00672 HAMP domain CHH28_RS01025 PF12729 Four helix bundle sensory module for signal transduction CHH28_RS01025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS01035 PF01979 Amidohydrolase family CHH28_RS01040 PF04115 Ureidoglycolate lyase CHH28_RS01045 PF00576 HIUase/Transthyretin family CHH28_RS01055 PF03561 Allantoicase repeat CHH28_RS01065 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CHH28_RS01065 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CHH28_RS01070 PF00941 FAD binding domain in molybdopterin dehydrogenase CHH28_RS01070 PF03450 CO dehydrogenase flavoprotein C-terminal domain CHH28_RS01075 PF00005 ABC transporter CHH28_RS01080 PF02653 Branched-chain amino acid transport system / permease component CHH28_RS01090 PF02608 ABC transporter substrate-binding protein PnrA-like CHH28_RS01100 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS01100 PF08362 YcdC-like protein, C-terminal region CHH28_RS01105 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS01105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS01110 PF01979 Amidohydrolase family CHH28_RS01130 PF00156 Phosphoribosyl transferase domain CHH28_RS01150 PF00551 Formyl transferase CHH28_RS01160 PF00672 HAMP domain CHH28_RS01160 PF00909 Ammonium Transporter Family CHH28_RS01165 PF00392 Bacterial regulatory proteins, gntR family CHH28_RS01165 PF07085 DRTGG domain CHH28_RS01165 PF00571 CBS domain CHH28_RS01165 PF03061 Thioesterase superfamily CHH28_RS01170 PF03641 Possible lysine decarboxylase CHH28_RS01170 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CHH28_RS01170 PF11892 Domain of unknown function (DUF3412) CHH28_RS01185 PF01329 Pterin 4 alpha carbinolamine dehydratase CHH28_RS01190 PF06906 Protein of unknown function (DUF1272) CHH28_RS01195 PF07690 Major Facilitator Superfamily CHH28_RS01200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS01200 PF03466 LysR substrate binding domain CHH28_RS01205 PF01323 DSBA-like thioredoxin domain CHH28_RS01210 PF00245 Alkaline phosphatase CHH28_RS01260 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CHH28_RS01260 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CHH28_RS01265 PF02545 Maf-like protein CHH28_RS01270 PF00263 Bacterial type II and III secretion system protein CHH28_RS01270 PF03958 Bacterial type II/III secretion system short domain CHH28_RS01290 PF00672 HAMP domain CHH28_RS01290 PF12729 Four helix bundle sensory module for signal transduction CHH28_RS01290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS01300 PF01541 GIY-YIG catalytic domain CHH28_RS01305 PF03006 Haemolysin-III related CHH28_RS01310 PF00472 RF-1 domain CHH28_RS01315 PF00226 DnaJ domain CHH28_RS01315 PF05099 Tellurite resistance protein TerB CHH28_RS01320 PF00483 Nucleotidyl transferase CHH28_RS01325 PF01636 Phosphotransferase enzyme family CHH28_RS01330 PF04453 LPS transport system D CHH28_RS01330 PF03968 OstA-like protein CHH28_RS01335 PF09312 SurA N-terminal domain CHH28_RS01335 PF00639 PPIC-type PPIASE domain CHH28_RS01340 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CHH28_RS01345 PF00398 Ribosomal RNA adenine dimethylase CHH28_RS01350 PF04379 ApaG domain CHH28_RS01355 PF00149 Calcineurin-like phosphoesterase CHH28_RS01360 PF00581 Rhodanese-like domain CHH28_RS01365 PF08298 PrkA AAA domain CHH28_RS01365 PF06798 PrkA serine protein kinase C-terminal domain CHH28_RS01370 PF04285 Protein of unknown function (DUF444) CHH28_RS01375 PF04293 SpoVR like protein CHH28_RS01395 PF01966 HD domain CHH28_RS01395 PF01743 Poly A polymerase head domain CHH28_RS01395 PF12627 Probable RNA and SrmB- binding site of polymerase A CHH28_RS01405 PF02152 Dihydroneopterin aldolase CHH28_RS01410 PF00814 Glycoprotease family CHH28_RS01415 PF01165 Ribosomal protein S21 CHH28_RS01425 PF08278 DNA primase DnaG DnaB-binding CHH28_RS01425 PF13662 Toprim domain CHH28_RS01425 PF01807 CHC2 zinc finger CHH28_RS01425 PF10410 DnaB-helicase binding domain of primase CHH28_RS01425 PF08275 DNA primase catalytic core, N-terminal domain CHH28_RS01430 PF04546 Sigma-70, non-essential region CHH28_RS01430 PF04545 Sigma-70, region 4 CHH28_RS01430 PF03979 Sigma-70 factor, region 1.1 CHH28_RS01430 PF04542 Sigma-70 region 2 CHH28_RS01430 PF04539 Sigma-70 region 3 CHH28_RS01430 PF00140 Sigma-70 factor, region 1.2 CHH28_RS01450 PF01432 Peptidase family M3 CHH28_RS01455 PF13185 GAF domain CHH28_RS01460 PF00106 short chain dehydrogenase CHH28_RS01465 PF00561 alpha/beta hydrolase fold CHH28_RS01470 PF00743 Flavin-binding monooxygenase-like CHH28_RS01480 PF00588 SpoU rRNA Methylase family CHH28_RS01480 PF08032 RNA 2'-O ribose methyltransferase substrate binding CHH28_RS01490 PF02779 Transketolase, pyrimidine binding domain CHH28_RS01490 PF02780 Transketolase, C-terminal domain CHH28_RS01490 PF00456 Transketolase, thiamine diphosphate binding domain CHH28_RS01500 PF08281 Sigma-70, region 4 CHH28_RS01500 PF04542 Sigma-70 region 2 CHH28_RS01530 PF02743 Cache domain CHH28_RS01530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS01530 PF00672 HAMP domain CHH28_RS01540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHH28_RS01545 PF00873 AcrB/AcrD/AcrF family CHH28_RS01550 PF02798 Glutathione S-transferase, N-terminal domain CHH28_RS01560 PF13673 Acetyltransferase (GNAT) domain CHH28_RS01570 PF07715 TonB-dependent Receptor Plug Domain CHH28_RS01570 PF00593 TonB dependent receptor CHH28_RS01575 PF00246 Zinc carboxypeptidase CHH28_RS01580 PF05922 Peptidase inhibitor I9 CHH28_RS01580 PF00082 Subtilase family CHH28_RS01580 PF04151 Bacterial pre-peptidase C-terminal domain CHH28_RS01600 PF01053 Cys/Met metabolism PLP-dependent enzyme CHH28_RS01605 PF18073 Rubredoxin metal binding domain CHH28_RS01610 PF03334 Na+/H+ antiporter subunit CHH28_RS01615 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CHH28_RS01620 PF01899 Na+/H+ ion antiporter subunit CHH28_RS01625 PF00361 Proton-conducting membrane transporter CHH28_RS01630 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CHH28_RS01635 PF13244 Domain of unknown function (DUF4040) CHH28_RS01635 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CHH28_RS01635 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CHH28_RS01635 PF00361 Proton-conducting membrane transporter CHH28_RS01640 PF01208 Uroporphyrinogen decarboxylase (URO-D) CHH28_RS01650 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CHH28_RS01650 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS01655 PF00310 Glutamine amidotransferases class-II CHH28_RS01655 PF04898 Glutamate synthase central domain CHH28_RS01655 PF01493 GXGXG motif CHH28_RS01655 PF01645 Conserved region in glutamate synthase CHH28_RS01665 PF01761 3-dehydroquinate synthase CHH28_RS01670 PF01202 Shikimate kinase CHH28_RS01675 PF11741 AMIN domain CHH28_RS01675 PF00263 Bacterial type II and III secretion system protein CHH28_RS01675 PF03958 Bacterial type II/III secretion system short domain CHH28_RS01675 PF07660 Secretin and TonB N terminus short domain CHH28_RS01680 PF04351 Pilus assembly protein, PilP CHH28_RS01685 PF04350 Pilus assembly protein, PilO CHH28_RS01690 PF05137 Fimbrial assembly protein (PilN) CHH28_RS01695 PF11104 Type IV pilus assembly protein PilM; CHH28_RS01700 PF17092 Penicillin-binding protein OB-like domain CHH28_RS01700 PF00912 Transglycosylase CHH28_RS01700 PF00905 Penicillin binding protein transpeptidase domain CHH28_RS01705 PF01565 FAD binding domain CHH28_RS01705 PF02913 FAD linked oxidases, C-terminal domain CHH28_RS01710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHH28_RS01710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHH28_RS01715 PF00977 Histidine biosynthesis protein CHH28_RS01720 PF00977 Histidine biosynthesis protein CHH28_RS01725 PF00117 Glutamine amidotransferase class-I CHH28_RS01730 PF00475 Imidazoleglycerol-phosphate dehydratase CHH28_RS01750 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS01750 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS01750 PF00563 EAL domain CHH28_RS01755 PF00633 Helix-hairpin-helix motif CHH28_RS01755 PF00730 HhH-GPD superfamily base excision DNA repair protein CHH28_RS01755 PF14815 NUDIX domain CHH28_RS01760 PF04362 Bacterial Fe(2+) trafficking CHH28_RS01790 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS01790 PF00563 EAL domain CHH28_RS01790 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS01795 PF03143 Elongation factor Tu C-terminal domain CHH28_RS01795 PF03144 Elongation factor Tu domain 2 CHH28_RS01795 PF00009 Elongation factor Tu GTP binding domain CHH28_RS01820 PF03309 Type III pantothenate kinase CHH28_RS01825 PF08279 HTH domain CHH28_RS01825 PF03099 Biotin/lipoate A/B protein ligase family CHH28_RS01825 PF02237 Biotin protein ligase C terminal domain CHH28_RS01850 PF00294 pfkB family carbohydrate kinase CHH28_RS01865 PF02397 Bacterial sugar transferase CHH28_RS01870 PF00535 Glycosyl transferase family 2 CHH28_RS01880 PF02719 Polysaccharide biosynthesis protein CHH28_RS01890 PF00535 Glycosyl transferase family 2 CHH28_RS01945 PF00534 Glycosyl transferases group 1 CHH28_RS01945 PF13439 Glycosyltransferase Family 4 CHH28_RS01950 PF08241 Methyltransferase domain CHH28_RS01955 PF00005 ABC transporter CHH28_RS01970 PF16363 GDP-mannose 4,6 dehydratase CHH28_RS01975 PF16363 GDP-mannose 4,6 dehydratase CHH28_RS01990 PF02321 Outer membrane efflux protein CHH28_RS01995 PF00529 HlyD membrane-fusion protein of T1SS CHH28_RS01995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHH28_RS02000 PF00664 ABC transporter transmembrane region CHH28_RS02000 PF00005 ABC transporter CHH28_RS02005 PF00483 Nucleotidyl transferase CHH28_RS02005 PF01050 Mannose-6-phosphate isomerase CHH28_RS02025 PF02690 Na+/Pi-cotransporter CHH28_RS02035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS02035 PF17200 Single Cache domain 2 CHH28_RS02035 PF00672 HAMP domain CHH28_RS02040 PF02567 Phenazine biosynthesis-like protein CHH28_RS02045 PF01169 Uncharacterized protein family UPF0016 CHH28_RS02050 PF12833 Helix-turn-helix domain CHH28_RS02055 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CHH28_RS02060 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CHH28_RS02065 PF13520 Amino acid permease CHH28_RS02075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CHH28_RS02075 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS02080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS02080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS02080 PF12806 Acetyl-CoA dehydrogenase C-terminal like CHH28_RS02080 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS02100 PF00082 Subtilase family CHH28_RS02100 PF02225 PA domain CHH28_RS02100 PF05922 Peptidase inhibitor I9 CHH28_RS02100 PF13860 FlgD Ig-like domain CHH28_RS02105 PF01965 DJ-1/PfpI family CHH28_RS02115 PF01053 Cys/Met metabolism PLP-dependent enzyme CHH28_RS02140 PF00282 Pyridoxal-dependent decarboxylase conserved domain CHH28_RS02145 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CHH28_RS02155 PF04183 IucA / IucC family CHH28_RS02155 PF06276 Ferric iron reductase FhuF-like transporter CHH28_RS02170 PF12833 Helix-turn-helix domain CHH28_RS02180 PF03606 C4-dicarboxylate anaerobic carrier CHH28_RS02190 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHH28_RS02190 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHH28_RS02195 PF00696 Amino acid kinase family CHH28_RS02200 PF12561 ToxR activated gene A lipoprotein domain CHH28_RS02200 PF00041 Fibronectin type III domain CHH28_RS02205 PF01152 Bacterial-like globin CHH28_RS02220 PF03591 AzlC protein CHH28_RS02225 PF05437 Branched-chain amino acid transport protein (AzlD) CHH28_RS02305 PF01593 Flavin containing amine oxidoreductase CHH28_RS02310 PF01925 Sulfite exporter TauE/SafE CHH28_RS02320 PF13840 ACT domain CHH28_RS02320 PF00696 Amino acid kinase family CHH28_RS02325 PF06339 Ectoine synthase CHH28_RS02330 PF00202 Aminotransferase class-III CHH28_RS02335 PF00583 Acetyltransferase (GNAT) family CHH28_RS02345 PF01047 MarR family CHH28_RS02350 PF02803 Thiolase, C-terminal domain CHH28_RS02350 PF00108 Thiolase, N-terminal domain CHH28_RS02355 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS02355 PF00501 AMP-binding enzyme CHH28_RS02360 PF01212 Beta-eliminating lyase CHH28_RS02365 PF00672 HAMP domain CHH28_RS02365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS02365 PF02743 Cache domain CHH28_RS02380 PF01804 Penicillin amidase CHH28_RS02395 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS02395 PF00072 Response regulator receiver domain CHH28_RS02400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS02400 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS02400 PF07689 KaiB domain CHH28_RS02430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS02430 PF03466 LysR substrate binding domain CHH28_RS02440 PF03942 DTW domain CHH28_RS02465 PF01209 ubiE/COQ5 methyltransferase family CHH28_RS02475 PF03109 ABC1 family CHH28_RS02480 PF01502 Phosphoribosyl-AMP cyclohydrolase CHH28_RS02485 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CHH28_RS02490 PF01230 HIT domain CHH28_RS02495 PF02416 mttA/Hcf106 family CHH28_RS02500 PF02416 mttA/Hcf106 family CHH28_RS02505 PF00902 Sec-independent protein translocase protein (TatC) CHH28_RS02515 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS02515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS02530 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CHH28_RS02530 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CHH28_RS02530 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CHH28_RS02530 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CHH28_RS02530 PF07703 Alpha-2-macroglobulin bait region domain CHH28_RS02530 PF00207 Alpha-2-macroglobulin family CHH28_RS02530 PF07678 A-macroglobulin TED domain CHH28_RS02530 PF01835 MG2 domain CHH28_RS02530 PF17962 Bacterial macroglobulin domain 6 CHH28_RS02535 PF00912 Transglycosylase CHH28_RS02535 PF06832 Penicillin-Binding Protein C-terminus Family CHH28_RS02535 PF00905 Penicillin binding protein transpeptidase domain CHH28_RS02545 PF00296 Luciferase-like monooxygenase CHH28_RS02555 PF02789 Cytosol aminopeptidase family, N-terminal domain CHH28_RS02555 PF00883 Cytosol aminopeptidase family, catalytic domain CHH28_RS02570 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CHH28_RS02575 PF03600 Citrate transporter CHH28_RS02575 PF02080 TrkA-C domain CHH28_RS02605 PF02872 5'-nucleotidase, C-terminal domain CHH28_RS02605 PF00149 Calcineurin-like phosphoesterase CHH28_RS02615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS02615 PF03466 LysR substrate binding domain CHH28_RS02635 PF12833 Helix-turn-helix domain CHH28_RS02635 PF06445 GyrI-like small molecule binding domain CHH28_RS02640 PF00704 Glycosyl hydrolases family 18 CHH28_RS02640 PF08329 Chitinase A, N-terminal domain CHH28_RS02645 PF00704 Glycosyl hydrolases family 18 CHH28_RS02645 PF06483 Chitinase C CHH28_RS02650 PF02567 Phenazine biosynthesis-like protein CHH28_RS02680 PF18158 Adaptive response protein AidB N-terminal domain CHH28_RS02680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS02680 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS02730 PF00034 Cytochrome c CHH28_RS02730 PF03150 Di-haem cytochrome c peroxidase CHH28_RS02795 PF00171 Aldehyde dehydrogenase family CHH28_RS02805 PF00732 GMC oxidoreductase CHH28_RS02805 PF05199 GMC oxidoreductase CHH28_RS02830 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CHH28_RS02830 PF00326 Prolyl oligopeptidase family CHH28_RS02835 PF00920 Dehydratase family CHH28_RS02840 PF04116 Fatty acid hydroxylase superfamily CHH28_RS02845 PF12833 Helix-turn-helix domain CHH28_RS02845 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CHH28_RS02850 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS02850 PF00501 AMP-binding enzyme CHH28_RS02880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS02880 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS02880 PF12806 Acetyl-CoA dehydrogenase C-terminal like CHH28_RS02880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS02910 PF00005 ABC transporter CHH28_RS02920 PF02687 FtsX-like permease family CHH28_RS02920 PF12704 MacB-like periplasmic core domain CHH28_RS02940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CHH28_RS02940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CHH28_RS02945 PF02805 Metal binding domain of Ada CHH28_RS02945 PF06029 AlkA N-terminal domain CHH28_RS02945 PF00730 HhH-GPD superfamily base excision DNA repair protein CHH28_RS02945 PF12833 Helix-turn-helix domain CHH28_RS02955 PF00472 RF-1 domain CHH28_RS02960 PF01467 Cytidylyltransferase-like CHH28_RS02965 PF00037 4Fe-4S binding domain CHH28_RS02980 PF06827 Zinc finger found in FPG and IleRS CHH28_RS02980 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CHH28_RS02980 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CHH28_RS02985 PF00471 Ribosomal protein L33 CHH28_RS02990 PF00830 Ribosomal L28 family CHH28_RS02995 PF04002 RadC-like JAB domain CHH28_RS03000 PF04127 DNA / pantothenate metabolism flavoprotein CHH28_RS03000 PF02441 Flavoprotein CHH28_RS03005 PF00692 dUTPase CHH28_RS03010 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHH28_RS03010 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHH28_RS03010 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHH28_RS03010 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHH28_RS03015 PF00696 Amino acid kinase family CHH28_RS03020 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS03030 PF00156 Phosphoribosyl transferase domain CHH28_RS03040 PF01138 3' exoribonuclease family, domain 1 CHH28_RS03040 PF03725 3' exoribonuclease family, domain 2 CHH28_RS03045 PF03755 YicC-like family, N-terminal region CHH28_RS03045 PF08340 Domain of unknown function (DUF1732) CHH28_RS03055 PF01322 Cytochrome C' CHH28_RS03065 PF00625 Guanylate kinase CHH28_RS03070 PF01192 RNA polymerase Rpb6 CHH28_RS03075 PF13291 ACT domain CHH28_RS03075 PF02824 TGS domain CHH28_RS03075 PF04607 Region found in RelA / SpoT proteins CHH28_RS03085 PF01925 Sulfite exporter TauE/SafE CHH28_RS03090 PF01790 Prolipoprotein diacylglyceryl transferase CHH28_RS03095 PF00303 Thymidylate synthase CHH28_RS03100 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS03100 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS03100 PF00563 EAL domain CHH28_RS03105 PF00186 Dihydrofolate reductase CHH28_RS03145 PF00696 Amino acid kinase family CHH28_RS03145 PF00583 Acetyltransferase (GNAT) family CHH28_RS03155 PF00437 Type II/IV secretion system protein CHH28_RS03155 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CHH28_RS03170 PF00072 Response regulator receiver domain CHH28_RS03175 PF03279 Bacterial lipid A biosynthesis acyltransferase CHH28_RS03180 PF01370 NAD dependent epimerase/dehydratase family CHH28_RS03185 PF00294 pfkB family carbohydrate kinase CHH28_RS03185 PF01467 Cytidylyltransferase-like CHH28_RS03190 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CHH28_RS03195 PF02321 Outer membrane efflux protein CHH28_RS03200 PF00293 NUDIX domain CHH28_RS03210 PF00149 Calcineurin-like phosphoesterase CHH28_RS03215 PF05728 Uncharacterised protein family (UPF0227) CHH28_RS03220 PF01751 Toprim domain CHH28_RS03220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS03220 PF00986 DNA gyrase B subunit, carboxyl terminus CHH28_RS03220 PF00204 DNA gyrase B CHH28_RS03225 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS03225 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS03225 PF00563 EAL domain CHH28_RS03245 PF05726 Pirin C-terminal cupin domain CHH28_RS03245 PF02678 Pirin CHH28_RS03250 PF00521 DNA gyrase/topoisomerase IV, subunit A CHH28_RS03250 PF03989 DNA gyrase C-terminal domain, beta-propeller CHH28_RS03270 PF00391 PEP-utilising enzyme, mobile domain CHH28_RS03270 PF05524 PEP-utilising enzyme, N-terminal CHH28_RS03270 PF02896 PEP-utilising enzyme, TIM barrel domain CHH28_RS03270 PF01590 GAF domain CHH28_RS03275 PF00293 NUDIX domain CHH28_RS03290 PF17785 PUA-like domain CHH28_RS03290 PF10672 S-adenosylmethionine-dependent methyltransferase CHH28_RS03300 PF01494 FAD binding domain CHH28_RS03305 PF01494 FAD binding domain CHH28_RS03310 PF05195 Aminopeptidase P, N-terminal domain CHH28_RS03310 PF00557 Metallopeptidase family M24 CHH28_RS03325 PF05164 Cell division protein ZapA CHH28_RS03335 PF01812 5-formyltetrahydrofolate cyclo-ligase family CHH28_RS03360 PF03951 Glutamine synthetase, beta-Grasp domain CHH28_RS03360 PF00120 Glutamine synthetase, catalytic domain CHH28_RS03365 PF03144 Elongation factor Tu domain 2 CHH28_RS03365 PF00009 Elongation factor Tu GTP binding domain CHH28_RS03365 PF00679 Elongation factor G C-terminus CHH28_RS03385 PF04012 PspA/IM30 family CHH28_RS03395 PF10679 Protein of unknown function (DUF2491) CHH28_RS03400 PF03994 Domain of Unknown Function (DUF350) CHH28_RS03410 PF03738 Glutathionylspermidine synthase preATP-grasp CHH28_RS03415 PF00390 Malic enzyme, N-terminal domain CHH28_RS03415 PF03949 Malic enzyme, NAD binding domain CHH28_RS03420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS03420 PF00672 HAMP domain CHH28_RS03420 PF16750 Sensor domain of 2-component histidine kinase CHH28_RS03420 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS03425 PF00072 Response regulator receiver domain CHH28_RS03425 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS03430 PF01594 AI-2E family transporter CHH28_RS03445 PF04172 LrgB-like family CHH28_RS03450 PF00072 Response regulator receiver domain CHH28_RS03450 PF09308 LuxQ, periplasmic CHH28_RS03450 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS03455 PF00293 NUDIX domain CHH28_RS03460 PF13419 Haloacid dehalogenase-like hydrolase CHH28_RS03465 PF01479 S4 domain CHH28_RS03470 PF01430 Hsp33 protein CHH28_RS03475 PF01293 Phosphoenolpyruvate carboxykinase CHH28_RS03480 PF00248 Aldo/keto reductase family CHH28_RS03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS03485 PF03466 LysR substrate binding domain CHH28_RS03490 PF09371 Tex-like protein N-terminal domain CHH28_RS03490 PF16921 Tex protein YqgF-like domain CHH28_RS03490 PF00575 S1 RNA binding domain CHH28_RS03490 PF17674 HHH domain CHH28_RS03495 PF04262 Glutamate-cysteine ligase CHH28_RS03505 PF02600 Disulfide bond formation protein DsbB CHH28_RS03510 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CHH28_RS03540 PF00005 ABC transporter CHH28_RS03540 PF12848 ABC transporter CHH28_RS03550 PF00210 Ferritin-like domain CHH28_RS03555 PF00293 NUDIX domain CHH28_RS03565 PF12697 Alpha/beta hydrolase family CHH28_RS03575 PF13302 Acetyltransferase (GNAT) domain CHH28_RS03605 PF13460 NAD(P)H-binding CHH28_RS03610 PF03466 LysR substrate binding domain CHH28_RS03610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS03650 PF02390 Putative methyltransferase CHH28_RS03655 PF04241 Protein of unknown function (DUF423) CHH28_RS03660 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CHH28_RS03665 PF00175 Oxidoreductase NAD-binding domain CHH28_RS03670 PF05552 Conserved TM helix CHH28_RS03670 PF00924 Mechanosensitive ion channel CHH28_RS03680 PF00563 EAL domain CHH28_RS03680 PF05231 MASE1 CHH28_RS03685 PF13458 Periplasmic binding protein CHH28_RS03700 PF03466 LysR substrate binding domain CHH28_RS03700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS03715 PF00491 Arginase family CHH28_RS03720 PF01979 Amidohydrolase family CHH28_RS03725 PF00392 Bacterial regulatory proteins, gntR family CHH28_RS03725 PF07702 UTRA domain CHH28_RS03730 PF01175 Urocanase Rossmann-like domain CHH28_RS03730 PF17392 Urocanase C-terminal domain CHH28_RS03730 PF17391 Urocanase N-terminal domain CHH28_RS03735 PF00221 Aromatic amino acid lyase CHH28_RS03770 PF00672 HAMP domain CHH28_RS03770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS03770 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS03770 PF01627 Hpt domain CHH28_RS03770 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHH28_RS03770 PF00072 Response regulator receiver domain CHH28_RS03775 PF00072 Response regulator receiver domain CHH28_RS03785 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CHH28_RS03790 PF02602 Uroporphyrinogen-III synthase HemD CHH28_RS03795 PF03900 Porphobilinogen deaminase, C-terminal domain CHH28_RS03795 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CHH28_RS03800 PF02322 Cytochrome bd terminal oxidase subunit II CHH28_RS03805 PF01654 Cytochrome bd terminal oxidase subunit I CHH28_RS03810 PF04397 LytTr DNA-binding domain CHH28_RS03810 PF00072 Response regulator receiver domain CHH28_RS03815 PF07694 5TMR of 5TMR-LYT CHH28_RS03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS03815 PF06580 Histidine kinase CHH28_RS03820 PF00206 Lyase CHH28_RS03820 PF14698 Argininosuccinate lyase C-terminal CHH28_RS03895 PF01510 N-acetylmuramoyl-L-alanine amidase CHH28_RS03910 PF00850 Histone deacetylase domain CHH28_RS03915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS03915 PF03466 LysR substrate binding domain CHH28_RS03925 PF00378 Enoyl-CoA hydratase/isomerase CHH28_RS03950 PF00905 Penicillin binding protein transpeptidase domain CHH28_RS03950 PF00912 Transglycosylase CHH28_RS03950 PF06832 Penicillin-Binding Protein C-terminus Family CHH28_RS03955 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CHH28_RS03955 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CHH28_RS03955 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CHH28_RS03955 PF17962 Bacterial macroglobulin domain 6 CHH28_RS03955 PF07703 Alpha-2-macroglobulin bait region domain CHH28_RS03955 PF00207 Alpha-2-macroglobulin family CHH28_RS03955 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CHH28_RS03955 PF01835 MG2 domain CHH28_RS03960 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CHH28_RS03960 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CHH28_RS03965 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHH28_RS03965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHH28_RS03970 PF00231 ATP synthase CHH28_RS03975 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHH28_RS03975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHH28_RS03975 PF00306 ATP synthase alpha/beta chain, C terminal domain CHH28_RS03980 PF00213 ATP synthase delta (OSCP) subunit CHH28_RS03985 PF00430 ATP synthase B/B' CF(0) CHH28_RS03990 PF00137 ATP synthase subunit C CHH28_RS03995 PF00119 ATP synthase A chain CHH28_RS04000 PF03899 ATP synthase I chain CHH28_RS04005 PF02195 ParB-like nuclease domain CHH28_RS04005 PF17762 HTH domain found in ParB protein CHH28_RS04010 PF13614 AAA domain CHH28_RS04015 PF02527 rRNA small subunit methyltransferase G CHH28_RS04020 PF06779 Uncharacterised MFS-type transporter YbfB CHH28_RS04030 PF00375 Sodium:dicarboxylate symporter family CHH28_RS04035 PF00375 Sodium:dicarboxylate symporter family CHH28_RS04040 PF00196 Bacterial regulatory proteins, luxR family CHH28_RS04040 PF00072 Response regulator receiver domain CHH28_RS04045 PF07730 Histidine kinase CHH28_RS04080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS04080 PF03466 LysR substrate binding domain CHH28_RS04140 PF00378 Enoyl-CoA hydratase/isomerase CHH28_RS04145 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS04145 PF00501 AMP-binding enzyme CHH28_RS04150 PF00682 HMGL-like CHH28_RS04155 PF02785 Biotin carboxylase C-terminal domain CHH28_RS04155 PF00289 Biotin carboxylase, N-terminal domain CHH28_RS04155 PF00364 Biotin-requiring enzyme CHH28_RS04155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHH28_RS04155 PF18140 Propionyl-coenzyme A carboxylase BT domain CHH28_RS04160 PF00378 Enoyl-CoA hydratase/isomerase CHH28_RS04165 PF01039 Carboxyl transferase domain CHH28_RS04170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS04170 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS04170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS04180 PF01810 LysE type translocator CHH28_RS04210 PF04134 Protein of unknown function, DUF393 CHH28_RS04220 PF00300 Histidine phosphatase superfamily (branch 1) CHH28_RS04250 PF13411 MerR HTH family regulatory protein CHH28_RS04265 PF03481 Putative GTP-binding controlling metal-binding CHH28_RS04265 PF01300 Telomere recombination CHH28_RS04275 PF01507 Phosphoadenosine phosphosulfate reductase family CHH28_RS04280 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CHH28_RS04285 PF00361 Proton-conducting membrane transporter CHH28_RS04285 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CHH28_RS04290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS04290 PF03466 LysR substrate binding domain CHH28_RS04315 PF07715 TonB-dependent Receptor Plug Domain CHH28_RS04335 PF02661 Fic/DOC family CHH28_RS04335 PF12728 Helix-turn-helix domain CHH28_RS04345 PF01134 Glucose inhibited division protein A CHH28_RS04345 PF13932 GidA associated domain CHH28_RS04355 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS04355 PF17932 Tetracyclin repressor-like, C-terminal domain CHH28_RS04375 PF01926 50S ribosome-binding GTPase CHH28_RS04375 PF12631 MnmE helical domain CHH28_RS04375 PF10396 GTP-binding protein TrmE N-terminus CHH28_RS04380 PF14849 YidC periplasmic domain CHH28_RS04380 PF02096 60Kd inner membrane protein CHH28_RS04385 PF01809 Putative membrane protein insertion efficiency factor CHH28_RS04390 PF00825 Ribonuclease P CHH28_RS04395 PF00468 Ribosomal protein L34 CHH28_RS04400 PF11638 DnaA N-terminal domain CHH28_RS04400 PF08299 Bacterial dnaA protein helix-turn-helix CHH28_RS04400 PF00308 Bacterial dnaA protein CHH28_RS04405 PF02768 DNA polymerase III beta subunit, C-terminal domain CHH28_RS04405 PF02767 DNA polymerase III beta subunit, central domain CHH28_RS04405 PF00712 DNA polymerase III beta subunit, N-terminal domain CHH28_RS04410 PF02463 RecF/RecN/SMC N terminal domain CHH28_RS04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS04415 PF18053 DNA gyrase B subunit insert domain CHH28_RS04415 PF00986 DNA gyrase B subunit, carboxyl terminus CHH28_RS04415 PF01751 Toprim domain CHH28_RS04415 PF00204 DNA gyrase B CHH28_RS04420 PF01042 Endoribonuclease L-PSP CHH28_RS04425 PF01810 LysE type translocator CHH28_RS04435 PF03553 Na+/H+ antiporter family CHH28_RS04435 PF13726 Na+-H+ antiporter family CHH28_RS04470 PF02092 Glycyl-tRNA synthetase beta subunit CHH28_RS04470 PF05746 DALR anticodon binding domain CHH28_RS04475 PF02091 Glycyl-tRNA synthetase alpha subunit CHH28_RS04485 PF00072 Response regulator receiver domain CHH28_RS04490 PF03279 Bacterial lipid A biosynthesis acyltransferase CHH28_RS04510 PF08281 Sigma-70, region 4 CHH28_RS04510 PF04542 Sigma-70 region 2 CHH28_RS04515 PF02386 Cation transport protein CHH28_RS04520 PF02254 TrkA-N domain CHH28_RS04520 PF02080 TrkA-C domain CHH28_RS04525 PF01189 16S rRNA methyltransferase RsmB/F CHH28_RS04525 PF01029 NusB family CHH28_RS04530 PF02911 Formyl transferase, C-terminal domain CHH28_RS04530 PF00551 Formyl transferase CHH28_RS04535 PF01327 Polypeptide deformylase CHH28_RS04545 PF17782 DprA winged helix domain CHH28_RS04545 PF02481 DNA recombination-mediator protein A CHH28_RS04550 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CHH28_RS04555 PF01270 Glycosyl hydrolases family 8 CHH28_RS04565 PF03552 Cellulose synthase CHH28_RS04565 PF00535 Glycosyl transferase family 2 CHH28_RS04565 PF07238 PilZ domain CHH28_RS04575 PF00072 Response regulator receiver domain CHH28_RS04575 PF01627 Hpt domain CHH28_RS04575 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS04575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS04575 PF17149 Periplasmic sensor domain found in signal transduction proteins CHH28_RS04575 PF00672 HAMP domain CHH28_RS04580 PF00072 Response regulator receiver domain CHH28_RS04580 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS04585 PF01218 Coproporphyrinogen III oxidase CHH28_RS04590 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CHH28_RS04590 PF01488 Shikimate / quinate 5-dehydrogenase CHH28_RS04590 PF08501 Shikimate dehydrogenase substrate binding domain CHH28_RS04600 PF01709 Transcriptional regulator CHH28_RS04605 PF03061 Thioesterase superfamily CHH28_RS04610 PF12849 PBP superfamily domain CHH28_RS04615 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS04620 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS04625 PF00005 ABC transporter CHH28_RS04630 PF01895 PhoU domain CHH28_RS04635 PF00267 Gram-negative porin CHH28_RS04685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS04685 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS04685 PF11808 Phosphate regulon sensor protein PhoR CHH28_RS04685 PF00989 PAS fold CHH28_RS04690 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS04690 PF00072 Response regulator receiver domain CHH28_RS04710 PF12105 SpoU, rRNA methylase, C-terminal CHH28_RS04710 PF00588 SpoU rRNA Methylase family CHH28_RS04720 PF00072 Response regulator receiver domain CHH28_RS04725 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS04725 PF11808 Phosphate regulon sensor protein PhoR CHH28_RS04725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS04725 PF00989 PAS fold CHH28_RS04730 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS04730 PF00072 Response regulator receiver domain CHH28_RS04735 PF01040 UbiA prenyltransferase family CHH28_RS04740 PF04345 Chorismate lyase CHH28_RS04745 PF00301 Rubredoxin CHH28_RS04750 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS04750 PF18113 Rubredoxin binding C-terminal domain CHH28_RS04755 PF00216 Bacterial DNA-binding protein CHH28_RS04780 PF17191 RecG wedge domain CHH28_RS04780 PF00271 Helicase conserved C-terminal domain CHH28_RS04780 PF00270 DEAD/DEAH box helicase CHH28_RS04785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS04785 PF03466 LysR substrate binding domain CHH28_RS04795 PF12804 MobA-like NTP transferase domain CHH28_RS04795 PF00132 Bacterial transferase hexapeptide (six repeats) CHH28_RS04795 PF14602 Hexapeptide repeat of succinyl-transferase CHH28_RS04800 PF01297 Zinc-uptake complex component A periplasmic CHH28_RS04805 PF01475 Ferric uptake regulator family CHH28_RS04810 PF00005 ABC transporter CHH28_RS04815 PF00950 ABC 3 transport family CHH28_RS04820 PF02630 SCO1/SenC CHH28_RS04825 PF01554 MatE CHH28_RS04835 PF03466 LysR substrate binding domain CHH28_RS04835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS04840 PF01292 Prokaryotic cytochrome b561 CHH28_RS04845 PF04264 YceI-like domain CHH28_RS04880 PF01432 Peptidase family M3 CHH28_RS04885 PF00132 Bacterial transferase hexapeptide (six repeats) CHH28_RS04890 PF01435 Peptidase family M48 CHH28_RS04920 PF01636 Phosphotransferase enzyme family CHH28_RS04930 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CHH28_RS04930 PF00476 DNA polymerase family A CHH28_RS04930 PF01612 3'-5' exonuclease CHH28_RS04930 PF01367 5'-3' exonuclease, C-terminal SAM fold CHH28_RS04935 PF01926 50S ribosome-binding GTPase CHH28_RS04940 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CHH28_RS04945 PF00034 Cytochrome c CHH28_RS04950 PF13462 Thioredoxin CHH28_RS04960 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS04965 PF00455 DeoR C terminal sensor domain CHH28_RS04965 PF08220 DeoR-like helix-turn-helix domain CHH28_RS04970 PF01380 SIS domain CHH28_RS04985 PF13361 UvrD-like helicase C-terminal domain CHH28_RS04985 PF00580 UvrD/REP helicase N-terminal domain CHH28_RS04990 PF13335 Magnesium chelatase, subunit ChlI C-terminal CHH28_RS04990 PF01078 Magnesium chelatase, subunit ChlI CHH28_RS04995 PF00082 Subtilase family CHH28_RS04995 PF01483 Proprotein convertase P-domain CHH28_RS05025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS05025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS05025 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS05035 PF01425 Amidase CHH28_RS05040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHH28_RS05040 PF02785 Biotin carboxylase C-terminal domain CHH28_RS05040 PF00289 Biotin carboxylase, N-terminal domain CHH28_RS05045 PF00392 Bacterial regulatory proteins, gntR family CHH28_RS05045 PF07729 FCD domain CHH28_RS05060 PF01810 LysE type translocator CHH28_RS05065 PF03466 LysR substrate binding domain CHH28_RS05065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS05075 PF02653 Branched-chain amino acid transport system / permease component CHH28_RS05080 PF02653 Branched-chain amino acid transport system / permease component CHH28_RS05085 PF00005 ABC transporter CHH28_RS05085 PF12399 Branched-chain amino acid ATP-binding cassette transporter CHH28_RS05090 PF00005 ABC transporter CHH28_RS05095 PF13488 Glycine zipper CHH28_RS05095 PF00691 OmpA family CHH28_RS05100 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS05100 PF08361 MAATS-type transcriptional repressor, C-terminal region CHH28_RS05105 PF00583 Acetyltransferase (GNAT) family CHH28_RS05115 PF04380 Membrane fusogenic activity CHH28_RS05130 PF00543 Nitrogen regulatory protein P-II CHH28_RS05135 PF00909 Ammonium Transporter Family CHH28_RS05150 PF09905 DNA-binding protein VF530 CHH28_RS05160 PF13409 Glutathione S-transferase, N-terminal domain CHH28_RS05165 PF07681 DoxX CHH28_RS05170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS05170 PF03466 LysR substrate binding domain CHH28_RS05190 PF01418 Helix-turn-helix domain, rpiR family CHH28_RS05190 PF01380 SIS domain CHH28_RS05195 PF00580 UvrD/REP helicase N-terminal domain CHH28_RS05195 PF13361 UvrD-like helicase C-terminal domain CHH28_RS05200 PF07963 Prokaryotic N-terminal methylation motif CHH28_RS05215 PF02881 SRP54-type protein, helical bundle domain CHH28_RS05215 PF00448 SRP54-type protein, GTPase domain CHH28_RS05220 PF00005 ABC transporter CHH28_RS05225 PF18075 FtsX extracellular domain CHH28_RS05230 PF00140 Sigma-70 factor, region 1.2 CHH28_RS05230 PF04542 Sigma-70 region 2 CHH28_RS05230 PF04545 Sigma-70, region 4 CHH28_RS05235 PF07498 Rho termination factor, N-terminal domain CHH28_RS05235 PF07497 Rho termination factor, RNA-binding domain CHH28_RS05235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHH28_RS05240 PF00085 Thioredoxin CHH28_RS05250 PF02541 Ppx/GppA phosphatase family CHH28_RS05260 PF02503 Polyphosphate kinase middle domain CHH28_RS05260 PF13090 Polyphosphate kinase C-terminal domain 2 CHH28_RS05260 PF17941 Polyphosphate kinase C-terminal domain 1 CHH28_RS05260 PF13089 Polyphosphate kinase N-terminal domain CHH28_RS05265 PF00490 Delta-aminolevulinic acid dehydratase CHH28_RS05270 PF03061 Thioesterase superfamily CHH28_RS05280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CHH28_RS05285 PF00291 Pyridoxal-phosphate dependent enzyme CHH28_RS05285 PF00585 C-terminal regulatory domain of Threonine dehydratase CHH28_RS05310 PF01554 MatE CHH28_RS05330 PF00072 Response regulator receiver domain CHH28_RS05330 PF17149 Periplasmic sensor domain found in signal transduction proteins CHH28_RS05330 PF00672 HAMP domain CHH28_RS05330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS05330 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS05330 PF01627 Hpt domain CHH28_RS05340 PF02325 YGGT family CHH28_RS05345 PF03807 NADP oxidoreductase coenzyme F420-dependent CHH28_RS05345 PF14748 Pyrroline-5-carboxylate reductase dimerisation CHH28_RS05350 PF01168 Alanine racemase, N-terminal domain CHH28_RS05355 PF00437 Type II/IV secretion system protein CHH28_RS05360 PF00437 Type II/IV secretion system protein CHH28_RS05365 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS05365 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS05365 PF00563 EAL domain CHH28_RS05370 PF02391 MoaE protein CHH28_RS05375 PF02597 ThiS family CHH28_RS05380 PF01967 MoaC family CHH28_RS05385 PF00994 Probable molybdopterin binding domain CHH28_RS05390 PF04055 Radical SAM superfamily CHH28_RS05390 PF06463 Molybdenum Cofactor Synthesis C CHH28_RS05400 PF01435 Peptidase family M48 CHH28_RS05405 PF04011 LemA family CHH28_RS05415 PF13617 YnbE-like lipoprotein CHH28_RS05420 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CHH28_RS05425 PF17284 Spermidine synthase tetramerisation domain CHH28_RS05430 PF17944 Arginine decarboxylase C-terminal helical extension CHH28_RS05430 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHH28_RS05430 PF17810 Arginine decarboxylase helical bundle domain CHH28_RS05450 PF01678 Diaminopimelate epimerase CHH28_RS05455 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHH28_RS05455 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CHH28_RS05460 PF12633 Adenylate cyclase NT domain CHH28_RS05460 PF01295 Adenylate cyclase, class-I CHH28_RS05465 PF01979 Amidohydrolase family CHH28_RS05470 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHH28_RS05470 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHH28_RS05475 PF00156 Phosphoribosyl transferase domain CHH28_RS05480 PF03652 Holliday junction resolvase CHH28_RS05485 PF02622 Uncharacterized ACR, COG1678 CHH28_RS05495 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CHH28_RS05495 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CHH28_RS05500 PF00072 Response regulator receiver domain CHH28_RS05505 PF00072 Response regulator receiver domain CHH28_RS05510 PF01584 CheW-like domain CHH28_RS05515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS05515 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CHH28_RS05520 PF01739 CheR methyltransferase, SAM binding domain CHH28_RS05525 PF01584 CheW-like domain CHH28_RS05525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS05525 PF01627 Hpt domain CHH28_RS05525 PF00072 Response regulator receiver domain CHH28_RS05525 PF02895 Signal transducing histidine kinase, homodimeric domain CHH28_RS05530 PF01339 CheB methylesterase CHH28_RS05530 PF00072 Response regulator receiver domain CHH28_RS05540 PF05159 Capsule polysaccharide biosynthesis protein CHH28_RS05570 PF02219 Methylenetetrahydrofolate reductase CHH28_RS05575 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CHH28_RS05575 PF05221 S-adenosyl-L-homocysteine hydrolase CHH28_RS05580 PF00438 S-adenosylmethionine synthetase, N-terminal domain CHH28_RS05580 PF02772 S-adenosylmethionine synthetase, central domain CHH28_RS05580 PF02773 S-adenosylmethionine synthetase, C-terminal domain CHH28_RS05585 PF01022 Bacterial regulatory protein, arsR family CHH28_RS05590 PF07726 ATPase family associated with various cellular activities (AAA) CHH28_RS05590 PF17863 AAA lid domain CHH28_RS05600 PF01841 Transglutaminase-like superfamily CHH28_RS05600 PF11992 Domain of unknown function (DUF3488) CHH28_RS05600 PF13559 Domain of unknown function (DUF4129) CHH28_RS05625 PF04389 Peptidase family M28 CHH28_RS05625 PF02225 PA domain CHH28_RS05640 PF00034 Cytochrome c CHH28_RS05640 PF03150 Di-haem cytochrome c peroxidase CHH28_RS05645 PF00465 Iron-containing alcohol dehydrogenase CHH28_RS05655 PF01131 DNA topoisomerase CHH28_RS05655 PF01751 Toprim domain CHH28_RS05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS05665 PF07730 Histidine kinase CHH28_RS05670 PF00196 Bacterial regulatory proteins, luxR family CHH28_RS05670 PF00072 Response regulator receiver domain CHH28_RS05675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS05675 PF00672 HAMP domain CHH28_RS05675 PF02743 Cache domain CHH28_RS05680 PF13230 Glutamine amidotransferases class-II CHH28_RS05685 PF03150 Di-haem cytochrome c peroxidase CHH28_RS05690 PF02321 Outer membrane efflux protein CHH28_RS05700 PF00873 AcrB/AcrD/AcrF family CHH28_RS05710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS05710 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS05710 PF00672 HAMP domain CHH28_RS05740 PF01063 Amino-transferase class IV CHH28_RS05745 PF03710 Glutamate-ammonia ligase adenylyltransferase CHH28_RS05745 PF08335 GlnD PII-uridylyltransferase CHH28_RS05750 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS05755 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS05760 PF00005 ABC transporter CHH28_RS05760 PF08402 TOBE domain CHH28_RS05765 PF13416 Bacterial extracellular solute-binding protein CHH28_RS05770 PF13416 Bacterial extracellular solute-binding protein CHH28_RS05775 PF14814 Bifunctional transglycosylase second domain CHH28_RS05775 PF00905 Penicillin binding protein transpeptidase domain CHH28_RS05775 PF00912 Transglycosylase CHH28_RS05790 PF00202 Aminotransferase class-III CHH28_RS05795 PF03653 Uncharacterised protein family (UPF0093) CHH28_RS05800 PF00654 Voltage gated chloride channel CHH28_RS05805 PF02774 Semialdehyde dehydrogenase, dimerisation domain CHH28_RS05805 PF01118 Semialdehyde dehydrogenase, NAD binding domain CHH28_RS05820 PF01521 Iron-sulphur cluster biosynthesis CHH28_RS05830 PF03702 Anhydro-N-acetylmuramic acid kinase CHH28_RS05835 PF01551 Peptidase family M23 CHH28_RS05835 PF04225 Opacity-associated protein A LysM-like domain CHH28_RS05840 PF00579 tRNA synthetases class I (W and Y) CHH28_RS05840 PF01479 S4 domain CHH28_RS05870 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS05870 PF07694 5TMR of 5TMR-LYT CHH28_RS05875 PF01230 HIT domain CHH28_RS05880 PF00005 ABC transporter CHH28_RS05895 PF00920 Dehydratase family CHH28_RS05900 PF01292 Prokaryotic cytochrome b561 CHH28_RS05905 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS05905 PF00072 Response regulator receiver domain CHH28_RS05915 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS05915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS05915 PF08521 Two-component sensor kinase N-terminal CHH28_RS05920 PF17770 Ribonuclease J C-terminal domain CHH28_RS05920 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CHH28_RS05920 PF12706 Beta-lactamase superfamily domain CHH28_RS05925 PF00750 tRNA synthetases class I (R) CHH28_RS05925 PF05746 DALR anticodon binding domain CHH28_RS05925 PF03485 Arginyl tRNA synthetase N terminal domain CHH28_RS05940 PF14492 Elongation Factor G, domain II CHH28_RS05940 PF00679 Elongation factor G C-terminus CHH28_RS05940 PF03144 Elongation factor Tu domain 2 CHH28_RS05940 PF03764 Elongation factor G, domain IV CHH28_RS05940 PF00009 Elongation factor Tu GTP binding domain CHH28_RS05950 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CHH28_RS05955 PF00467 KOW motif CHH28_RS05955 PF02357 Transcription termination factor nusG CHH28_RS05960 PF00298 Ribosomal protein L11, RNA binding domain CHH28_RS05960 PF03946 Ribosomal protein L11, N-terminal domain CHH28_RS05965 PF00687 Ribosomal protein L1p/L10e family CHH28_RS05970 PF00466 Ribosomal protein L10 CHH28_RS05975 PF16320 Ribosomal protein L7/L12 dimerisation domain CHH28_RS05975 PF00542 Ribosomal protein L7/L12 C-terminal domain CHH28_RS05980 PF04561 RNA polymerase Rpb2, domain 2 CHH28_RS05980 PF04563 RNA polymerase beta subunit CHH28_RS05980 PF04560 RNA polymerase Rpb2, domain 7 CHH28_RS05980 PF04565 RNA polymerase Rpb2, domain 3 CHH28_RS05980 PF00562 RNA polymerase Rpb2, domain 6 CHH28_RS05980 PF10385 RNA polymerase beta subunit external 1 domain CHH28_RS05985 PF04998 RNA polymerase Rpb1, domain 5 CHH28_RS05985 PF04997 RNA polymerase Rpb1, domain 1 CHH28_RS05985 PF00623 RNA polymerase Rpb1, domain 2 CHH28_RS05985 PF04983 RNA polymerase Rpb1, domain 3 CHH28_RS05985 PF05000 RNA polymerase Rpb1, domain 4 CHH28_RS05990 PF00164 Ribosomal protein S12/S23 CHH28_RS05995 PF00177 Ribosomal protein S7p/S5e CHH28_RS06000 PF00009 Elongation factor Tu GTP binding domain CHH28_RS06000 PF03144 Elongation factor Tu domain 2 CHH28_RS06000 PF03764 Elongation factor G, domain IV CHH28_RS06000 PF14492 Elongation Factor G, domain II CHH28_RS06000 PF00679 Elongation factor G C-terminus CHH28_RS06005 PF00009 Elongation factor Tu GTP binding domain CHH28_RS06005 PF03144 Elongation factor Tu domain 2 CHH28_RS06005 PF03143 Elongation factor Tu C-terminal domain CHH28_RS06010 PF00338 Ribosomal protein S10p/S20e CHH28_RS06015 PF00297 Ribosomal protein L3 CHH28_RS06020 PF00573 Ribosomal protein L4/L1 family CHH28_RS06025 PF00276 Ribosomal protein L23 CHH28_RS06030 PF03947 Ribosomal Proteins L2, C-terminal domain CHH28_RS06030 PF00181 Ribosomal Proteins L2, RNA binding domain CHH28_RS06035 PF00203 Ribosomal protein S19 CHH28_RS06040 PF00237 Ribosomal protein L22p/L17e CHH28_RS06045 PF00189 Ribosomal protein S3, C-terminal domain CHH28_RS06045 PF07650 KH domain CHH28_RS06050 PF00252 Ribosomal protein L16p/L10e CHH28_RS06055 PF00831 Ribosomal L29 protein CHH28_RS06060 PF00366 Ribosomal protein S17 CHH28_RS06065 PF00238 Ribosomal protein L14p/L23e CHH28_RS06070 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CHH28_RS06070 PF00467 KOW motif CHH28_RS06075 PF00281 Ribosomal protein L5 CHH28_RS06075 PF00673 ribosomal L5P family C-terminus CHH28_RS06080 PF00253 Ribosomal protein S14p/S29e CHH28_RS06085 PF00410 Ribosomal protein S8 CHH28_RS06090 PF00347 Ribosomal protein L6 CHH28_RS06095 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CHH28_RS06100 PF03719 Ribosomal protein S5, C-terminal domain CHH28_RS06100 PF00333 Ribosomal protein S5, N-terminal domain CHH28_RS06105 PF00327 Ribosomal protein L30p/L7e CHH28_RS06110 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CHH28_RS06115 PF00344 SecY translocase CHH28_RS06120 PF00444 Ribosomal protein L36 CHH28_RS06125 PF00416 Ribosomal protein S13/S18 CHH28_RS06130 PF00411 Ribosomal protein S11 CHH28_RS06135 PF00163 Ribosomal protein S4/S9 N-terminal domain CHH28_RS06135 PF01479 S4 domain CHH28_RS06140 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CHH28_RS06140 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CHH28_RS06140 PF01000 RNA polymerase Rpb3/RpoA insert domain CHH28_RS06145 PF01196 Ribosomal protein L17 CHH28_RS06155 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CHH28_RS06185 PF00581 Rhodanese-like domain CHH28_RS06200 PF07885 Ion channel CHH28_RS06200 PF02254 TrkA-N domain CHH28_RS06210 PF00571 CBS domain CHH28_RS06220 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS06220 PF00072 Response regulator receiver domain CHH28_RS06225 PF16750 Sensor domain of 2-component histidine kinase CHH28_RS06225 PF00672 HAMP domain CHH28_RS06225 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS06225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS06235 PF03060 Nitronate monooxygenase CHH28_RS06240 PF00561 alpha/beta hydrolase fold CHH28_RS06245 PF03280 Proteobacterial lipase chaperone protein CHH28_RS06255 PF00563 EAL domain CHH28_RS06255 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS06255 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS06260 PF13472 GDSL-like Lipase/Acylhydrolase family CHH28_RS06265 PF00005 ABC transporter CHH28_RS06280 PF02492 CobW/HypB/UreG, nucleotide-binding domain CHH28_RS06280 PF07683 Cobalamin synthesis protein cobW C-terminal domain CHH28_RS06290 PF00171 Aldehyde dehydrogenase family CHH28_RS06325 PF00258 Flavodoxin CHH28_RS06345 PF00593 TonB dependent receptor CHH28_RS06345 PF07715 TonB-dependent Receptor Plug Domain CHH28_RS06355 PF05171 Haemin-degrading HemS.ChuX domain CHH28_RS06360 PF01497 Periplasmic binding protein CHH28_RS06365 PF01032 FecCD transport family CHH28_RS06370 PF00005 ABC transporter CHH28_RS06390 PF07694 5TMR of 5TMR-LYT CHH28_RS06390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS06390 PF06580 Histidine kinase CHH28_RS06395 PF04397 LytTr DNA-binding domain CHH28_RS06395 PF00072 Response regulator receiver domain CHH28_RS06400 PF00873 AcrB/AcrD/AcrF family CHH28_RS06405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHH28_RS06410 PF03466 LysR substrate binding domain CHH28_RS06410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS06415 PF00857 Isochorismatase family CHH28_RS06450 PF00557 Metallopeptidase family M24 CHH28_RS06450 PF01321 Creatinase/Prolidase N-terminal domain CHH28_RS06490 PF00005 ABC transporter CHH28_RS06500 PF00005 ABC transporter CHH28_RS06500 PF00664 ABC transporter transmembrane region CHH28_RS06505 PF01734 Patatin-like phospholipase CHH28_RS06510 PF06969 HemN C-terminal domain CHH28_RS06510 PF04055 Radical SAM superfamily CHH28_RS06520 PF01725 Ham1 family CHH28_RS06530 PF07021 Methionine biosynthesis protein MetW CHH28_RS06530 PF00561 alpha/beta hydrolase fold CHH28_RS06550 PF00581 Rhodanese-like domain CHH28_RS06555 PF03575 Peptidase family S51 CHH28_RS06560 PF03061 Thioesterase superfamily CHH28_RS06570 PF05987 Bacterial protein of unknown function (DUF898) CHH28_RS06575 PF04608 Phosphatidylglycerophosphatase A CHH28_RS06585 PF17764 3′ DNA-binding domain (3′BD) CHH28_RS06585 PF00271 Helicase conserved C-terminal domain CHH28_RS06585 PF18074 Primosomal protein N C-terminal domain CHH28_RS06585 PF00270 DEAD/DEAH box helicase CHH28_RS06585 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CHH28_RS06590 PF01197 Ribosomal protein L31 CHH28_RS06600 PF00753 Metallo-beta-lactamase superfamily CHH28_RS06615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHH28_RS06620 PF00227 Proteasome subunit CHH28_RS06625 PF00004 ATPase family associated with various cellular activities (AAA) CHH28_RS06625 PF07724 AAA domain (Cdc48 subfamily) CHH28_RS06630 PF00672 HAMP domain CHH28_RS06630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS06630 PF17200 Single Cache domain 2 CHH28_RS06640 PF08461 Ribonuclease R winged-helix domain CHH28_RS06640 PF17876 Cold shock domain CHH28_RS06640 PF00575 S1 RNA binding domain CHH28_RS06640 PF00773 RNB domain CHH28_RS06640 PF08206 Ribonuclease B OB domain CHH28_RS06645 PF00588 SpoU rRNA Methylase family CHH28_RS06645 PF08032 RNA 2'-O ribose methyltransferase substrate binding CHH28_RS06650 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CHH28_RS06650 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CHH28_RS06655 PF00924 Mechanosensitive ion channel CHH28_RS06660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS06660 PF03466 LysR substrate binding domain CHH28_RS06665 PF02785 Biotin carboxylase C-terminal domain CHH28_RS06665 PF00289 Biotin carboxylase, N-terminal domain CHH28_RS06665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHH28_RS06670 PF00364 Biotin-requiring enzyme CHH28_RS06670 PF00682 HMGL-like CHH28_RS06670 PF02436 Conserved carboxylase domain CHH28_RS06685 PF00484 Carbonic anhydrase CHH28_RS06740 PF14552 Tautomerase enzyme CHH28_RS06750 PF00403 Heavy-metal-associated domain CHH28_RS06755 PF00376 MerR family regulatory protein CHH28_RS06755 PF09278 MerR, DNA binding CHH28_RS06760 PF03458 UPF0126 domain CHH28_RS06765 PF02789 Cytosol aminopeptidase family, N-terminal domain CHH28_RS06765 PF00883 Cytosol aminopeptidase family, catalytic domain CHH28_RS06770 PF09423 PhoD-like phosphatase CHH28_RS06770 PF16655 PhoD-like phosphatase, N-terminal domain CHH28_RS06775 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS06775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS06775 PF12806 Acetyl-CoA dehydrogenase C-terminal like CHH28_RS06775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS06785 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CHH28_RS06785 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CHH28_RS06790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS06790 PF03466 LysR substrate binding domain CHH28_RS06795 PF01066 CDP-alcohol phosphatidyltransferase CHH28_RS06800 PF00174 Oxidoreductase molybdopterin binding domain CHH28_RS06805 PF01794 Ferric reductase like transmembrane component CHH28_RS06840 PF04452 RNA methyltransferase CHH28_RS06850 PF00691 OmpA family CHH28_RS06850 PF13677 Membrane MotB of proton-channel complex MotA/MotB CHH28_RS06855 PF01618 MotA/TolQ/ExbB proton channel family CHH28_RS06860 PF02609 Exonuclease VII small subunit CHH28_RS06865 PF00348 Polyprenyl synthetase CHH28_RS06870 PF02780 Transketolase, C-terminal domain CHH28_RS06870 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CHH28_RS06870 PF02779 Transketolase, pyrimidine binding domain CHH28_RS06875 PF00072 Response regulator receiver domain CHH28_RS06875 PF02954 Bacterial regulatory protein, Fis family CHH28_RS06875 PF00158 Sigma-54 interaction domain CHH28_RS06880 PF00925 GTP cyclohydrolase II CHH28_RS06885 PF04298 Putative neutral zinc metallopeptidase CHH28_RS06900 PF01250 Ribosomal protein S6 CHH28_RS06905 PF01084 Ribosomal protein S18 CHH28_RS06915 PF03948 Ribosomal protein L9, C-terminal domain CHH28_RS06915 PF01281 Ribosomal protein L9, N-terminal domain CHH28_RS06920 PF00772 DnaB-like helicase N terminal domain CHH28_RS06920 PF03796 DnaB-like helicase C terminal domain CHH28_RS06940 PF00753 Metallo-beta-lactamase superfamily CHH28_RS06945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CHH28_RS06945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CHH28_RS06950 PF00162 Phosphoglycerate kinase CHH28_RS06970 PF01872 RibD C-terminal domain CHH28_RS06970 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CHH28_RS06995 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHH28_RS06995 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CHH28_RS07005 PF00583 Acetyltransferase (GNAT) family CHH28_RS07010 PF13302 Acetyltransferase (GNAT) domain CHH28_RS07015 PF01209 ubiE/COQ5 methyltransferase family CHH28_RS07025 PF07722 Peptidase C26 CHH28_RS07060 PF01638 HxlR-like helix-turn-helix CHH28_RS07075 PF01116 Fructose-bisphosphate aldolase class-II CHH28_RS07155 PF01980 tRNA-methyltransferase O CHH28_RS07170 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS07170 PF00563 EAL domain CHH28_RS07170 PF13426 PAS domain CHH28_RS07190 PF13302 Acetyltransferase (GNAT) domain CHH28_RS07195 PF03352 Methyladenine glycosylase CHH28_RS07230 PF00375 Sodium:dicarboxylate symporter family CHH28_RS07240 PF02657 Fe-S metabolism associated domain CHH28_RS07245 PF00155 Aminotransferase class I and II CHH28_RS07250 PF03358 NADPH-dependent FMN reductase CHH28_RS07255 PF00561 alpha/beta hydrolase fold CHH28_RS07265 PF13580 SIS domain CHH28_RS07270 PF13847 Methyltransferase domain CHH28_RS07290 PF12792 CSS motif domain associated with EAL CHH28_RS07290 PF00563 EAL domain CHH28_RS07325 PF00561 alpha/beta hydrolase fold CHH28_RS07330 PF01145 SPFH domain / Band 7 family CHH28_RS07340 PF09335 SNARE associated Golgi protein CHH28_RS07345 PF00849 RNA pseudouridylate synthase CHH28_RS07345 PF01479 S4 domain CHH28_RS07355 PF03176 MMPL family CHH28_RS07370 PF00717 Peptidase S24-like CHH28_RS07370 PF01381 Helix-turn-helix CHH28_RS07390 PF00271 Helicase conserved C-terminal domain CHH28_RS07390 PF03880 DbpA RNA binding domain CHH28_RS07390 PF00270 DEAD/DEAH box helicase CHH28_RS07400 PF02311 AraC-like ligand binding domain CHH28_RS07400 PF12833 Helix-turn-helix domain CHH28_RS07420 PF13673 Acetyltransferase (GNAT) domain CHH28_RS07440 PF00501 AMP-binding enzyme CHH28_RS07440 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS07445 PF01474 Class-II DAHP synthetase family CHH28_RS07455 PF00677 Lumazine binding domain CHH28_RS07460 PF13419 Haloacid dehalogenase-like hydrolase CHH28_RS07470 PF13673 Acetyltransferase (GNAT) domain CHH28_RS07470 PF04229 GrpB protein CHH28_RS07500 PF13302 Acetyltransferase (GNAT) domain CHH28_RS07500 PF00027 Cyclic nucleotide-binding domain CHH28_RS07505 PF00583 Acetyltransferase (GNAT) family CHH28_RS07520 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CHH28_RS07575 PF00293 NUDIX domain CHH28_RS07590 PF00005 ABC transporter CHH28_RS07615 PF12852 Cupin CHH28_RS07615 PF12833 Helix-turn-helix domain CHH28_RS07620 PF01810 LysE type translocator CHH28_RS07630 PF17763 Glutaminase/Asparaginase C-terminal domain CHH28_RS07630 PF00710 Asparaginase, N-terminal CHH28_RS07645 PF03831 PhnA domain CHH28_RS07645 PF08274 PhnA Zinc-Ribbon CHH28_RS07650 PF03992 Antibiotic biosynthesis monooxygenase CHH28_RS07670 PF12833 Helix-turn-helix domain CHH28_RS07670 PF01965 DJ-1/PfpI family CHH28_RS07685 PF00209 Sodium:neurotransmitter symporter family CHH28_RS07700 PF00842 Alanine racemase, C-terminal domain CHH28_RS07700 PF01168 Alanine racemase, N-terminal domain CHH28_RS07705 PF04237 YjbR CHH28_RS07710 PF08240 Alcohol dehydrogenase GroES-like domain CHH28_RS07710 PF00107 Zinc-binding dehydrogenase CHH28_RS07725 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS07725 PF00072 Response regulator receiver domain CHH28_RS07735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS07735 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS07750 PF00108 Thiolase, N-terminal domain CHH28_RS07750 PF02803 Thiolase, C-terminal domain CHH28_RS07765 PF07044 Protein of unknown function (DUF1329) CHH28_RS07775 PF01758 Sodium Bile acid symporter family CHH28_RS07800 PF01636 Phosphotransferase enzyme family CHH28_RS07805 PF00156 Phosphoribosyl transferase domain CHH28_RS07810 PF06968 Biotin and Thiamin Synthesis associated domain CHH28_RS07810 PF04055 Radical SAM superfamily CHH28_RS07825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS07825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS07825 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS07825 PF12806 Acetyl-CoA dehydrogenase C-terminal like CHH28_RS07830 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS07830 PF12806 Acetyl-CoA dehydrogenase C-terminal like CHH28_RS07830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS07830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS07855 PF00425 chorismate binding enzyme CHH28_RS07855 PF04715 Anthranilate synthase component I, N terminal region CHH28_RS07860 PF00117 Glutamine amidotransferase class-I CHH28_RS07865 PF00591 Glycosyl transferase family, a/b domain CHH28_RS07865 PF02885 Glycosyl transferase family, helical bundle domain CHH28_RS07870 PF00218 Indole-3-glycerol phosphate synthase CHH28_RS07875 PF05860 haemagglutination activity domain CHH28_RS07875 PF13332 Hemagglutinin repeat CHH28_RS07875 PF05594 Haemagluttinin repeat CHH28_RS07875 PF13018 Extended Signal Peptide of Type V secretion system CHH28_RS07880 PF08479 POTRA domain, ShlB-type CHH28_RS07880 PF17287 POTRA domain CHH28_RS07880 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CHH28_RS07885 PF13332 Hemagglutinin repeat CHH28_RS07885 PF05860 haemagglutination activity domain CHH28_RS07925 PF01527 Transposase CHH28_RS07935 PF13333 Integrase core domain CHH28_RS07935 PF13276 HTH-like domain CHH28_RS07935 PF00665 Integrase core domain CHH28_RS07970 PF00591 Glycosyl transferase family, a/b domain CHH28_RS07970 PF02885 Glycosyl transferase family, helical bundle domain CHH28_RS07975 PF00218 Indole-3-glycerol phosphate synthase CHH28_RS07985 PF11849 Domain of unknown function (DUF3369) CHH28_RS07990 PF13545 Crp-like helix-turn-helix domain CHH28_RS07990 PF00027 Cyclic nucleotide-binding domain CHH28_RS07995 PF02566 OsmC-like protein CHH28_RS08000 PF02675 S-adenosylmethionine decarboxylase CHH28_RS08010 PF05175 Methyltransferase small domain CHH28_RS08010 PF08468 Methyltransferase small domain N-terminal CHH28_RS08015 PF13411 MerR HTH family regulatory protein CHH28_RS08015 PF02607 B12 binding domain CHH28_RS08015 PF02310 B12 binding domain CHH28_RS08020 PF01740 STAS domain CHH28_RS08020 PF13426 PAS domain CHH28_RS08025 PF00719 Inorganic pyrophosphatase CHH28_RS08030 PF07715 TonB-dependent Receptor Plug Domain CHH28_RS08030 PF00593 TonB dependent receptor CHH28_RS08040 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS08040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS08040 PF00072 Response regulator receiver domain CHH28_RS08040 PF09308 LuxQ, periplasmic CHH28_RS08045 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CHH28_RS08050 PF01225 Mur ligase family, catalytic domain CHH28_RS08050 PF08245 Mur ligase middle domain CHH28_RS08050 PF02875 Mur ligase family, glutamate ligase domain CHH28_RS08055 PF02441 Flavoprotein CHH28_RS08070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHH28_RS08070 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS08075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHH28_RS08080 PF08534 Redoxin CHH28_RS08080 PF00462 Glutaredoxin CHH28_RS08090 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CHH28_RS08105 PF06144 DNA polymerase III, delta subunit CHH28_RS08105 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CHH28_RS08110 PF04390 Lipopolysaccharide-assembly CHH28_RS08115 PF13603 Leucyl-tRNA synthetase, Domain 2 CHH28_RS08115 PF00133 tRNA synthetases class I (I, L, M and V) CHH28_RS08115 PF08264 Anticodon-binding domain of tRNA CHH28_RS08130 PF05378 Hydantoinase/oxoprolinase N-terminal region CHH28_RS08130 PF01968 Hydantoinase/oxoprolinase CHH28_RS08135 PF00462 Glutaredoxin CHH28_RS08165 PF04116 Fatty acid hydroxylase superfamily CHH28_RS08170 PF07660 Secretin and TonB N terminus short domain CHH28_RS08170 PF00593 TonB dependent receptor CHH28_RS08170 PF07715 TonB-dependent Receptor Plug Domain CHH28_RS08175 PF00196 Bacterial regulatory proteins, luxR family CHH28_RS08175 PF00072 Response regulator receiver domain CHH28_RS08190 PF03466 LysR substrate binding domain CHH28_RS08190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS08215 PF13302 Acetyltransferase (GNAT) domain CHH28_RS08250 PF00106 short chain dehydrogenase CHH28_RS08265 PF00875 DNA photolyase CHH28_RS08265 PF03441 FAD binding domain of DNA photolyase CHH28_RS08270 PF13411 MerR HTH family regulatory protein CHH28_RS08285 PF01593 Flavin containing amine oxidoreductase CHH28_RS08290 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS08290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS08290 PF12806 Acetyl-CoA dehydrogenase C-terminal like CHH28_RS08290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS08295 PF01370 NAD dependent epimerase/dehydratase family CHH28_RS08295 PF08338 Domain of unknown function (DUF1731) CHH28_RS08305 PF01645 Conserved region in glutamate synthase CHH28_RS08335 PF01042 Endoribonuclease L-PSP CHH28_RS08340 PF01266 FAD dependent oxidoreductase CHH28_RS08345 PF01037 Lrp/AsnC ligand binding domain CHH28_RS08360 PF00672 HAMP domain CHH28_RS08360 PF02203 Tar ligand binding domain homologue CHH28_RS08360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS08365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS08365 PF12729 Four helix bundle sensory module for signal transduction CHH28_RS08365 PF00672 HAMP domain CHH28_RS08370 PF07883 Cupin domain CHH28_RS08370 PF01381 Helix-turn-helix CHH28_RS08375 PF03594 Benzoate membrane transport protein CHH28_RS08380 PF13091 PLD-like domain CHH28_RS08385 PF00563 EAL domain CHH28_RS08385 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS08385 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS08400 PF00873 AcrB/AcrD/AcrF family CHH28_RS08410 PF18500 CadC C-terminal domain 1 CHH28_RS08410 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS08415 PF11412 Disulphide bond corrector protein DsbC CHH28_RS08415 PF02683 Cytochrome C biogenesis protein transmembrane region CHH28_RS08430 PF00009 Elongation factor Tu GTP binding domain CHH28_RS08430 PF16658 Class II release factor RF3, C-terminal domain CHH28_RS08440 PF00572 Ribosomal protein L13 CHH28_RS08445 PF00380 Ribosomal protein S9/S16 CHH28_RS08450 PF00355 Rieske [2Fe-2S] domain CHH28_RS08450 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CHH28_RS08455 PF00033 Cytochrome b/b6/petB CHH28_RS08455 PF00032 Cytochrome b(C-terminal)/b6/petD CHH28_RS08460 PF02167 Cytochrome C1 family CHH28_RS08465 PF00043 Glutathione S-transferase, C-terminal domain CHH28_RS08465 PF02798 Glutathione S-transferase, N-terminal domain CHH28_RS08470 PF04386 Stringent starvation protein B CHH28_RS08480 PF10415 Fumarase C C-terminus CHH28_RS08480 PF00206 Lyase CHH28_RS08505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS08505 PF03466 LysR substrate binding domain CHH28_RS08520 PF01925 Sulfite exporter TauE/SafE CHH28_RS08525 PF01717 Cobalamin-independent synthase, Catalytic domain CHH28_RS08550 PF02637 GatB domain CHH28_RS08550 PF02934 GatB/GatE catalytic domain CHH28_RS08555 PF01425 Amidase CHH28_RS08560 PF02686 Glu-tRNAGln amidotransferase C subunit CHH28_RS08570 PF04085 rod shape-determining protein MreC CHH28_RS08580 PF02545 Maf-like protein CHH28_RS08585 PF00575 S1 RNA binding domain CHH28_RS08585 PF10150 Ribonuclease E/G family CHH28_RS08595 PF00795 Carbon-nitrogen hydrolase CHH28_RS08600 PF04751 Protein of unknown function (DUF615) CHH28_RS08605 PF03448 MgtE intracellular N domain CHH28_RS08605 PF01769 Divalent cation transporter CHH28_RS08605 PF00571 CBS domain CHH28_RS08610 PF00381 PTS HPr component phosphorylation site CHH28_RS08615 PF03668 P-loop ATPase protein family CHH28_RS08620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHH28_RS08625 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CHH28_RS08630 PF00309 Sigma-54 factor, Activator interacting domain (AID) CHH28_RS08630 PF04963 Sigma-54 factor, core binding domain CHH28_RS08630 PF04552 Sigma-54, DNA binding domain CHH28_RS08635 PF12399 Branched-chain amino acid ATP-binding cassette transporter CHH28_RS08635 PF00005 ABC transporter CHH28_RS08640 PF03968 OstA-like protein CHH28_RS08650 PF01380 SIS domain CHH28_RS08650 PF00571 CBS domain CHH28_RS08655 PF01699 Sodium/calcium exchanger protein CHH28_RS08660 PF00005 ABC transporter CHH28_RS08665 PF02405 Permease MlaE CHH28_RS08670 PF02470 MlaD protein CHH28_RS08680 PF01722 BolA-like protein CHH28_RS08685 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CHH28_RS08690 PF01634 ATP phosphoribosyltransferase CHH28_RS08695 PF00815 Histidinol dehydrogenase CHH28_RS08700 PF13180 PDZ domain CHH28_RS08705 PF01784 NIF3 (NGG1p interacting factor 3) CHH28_RS08725 PF06418 CTP synthase N-terminus CHH28_RS08725 PF00117 Glutamine amidotransferase class-I CHH28_RS08730 PF00113 Enolase, C-terminal TIM barrel domain CHH28_RS08730 PF03952 Enolase, N-terminal domain CHH28_RS08735 PF04977 Septum formation initiator CHH28_RS08740 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CHH28_RS08745 PF02542 YgbB family CHH28_RS08750 PF01142 tRNA pseudouridine synthase D (TruD) CHH28_RS08755 PF01975 Survival protein SurE CHH28_RS08770 PF01551 Peptidase family M23 CHH28_RS08770 PF01476 LysM domain CHH28_RS08775 PF00140 Sigma-70 factor, region 1.2 CHH28_RS08775 PF04545 Sigma-70, region 4 CHH28_RS08775 PF04542 Sigma-70 region 2 CHH28_RS08775 PF04539 Sigma-70 region 3 CHH28_RS08780 PF11953 Domain of unknown function (DUF3470) CHH28_RS08780 PF00037 4Fe-4S binding domain CHH28_RS08785 PF00488 MutS domain V CHH28_RS08785 PF01624 MutS domain I CHH28_RS08785 PF05188 MutS domain II CHH28_RS08785 PF05192 MutS domain III CHH28_RS08785 PF05190 MutS family domain IV CHH28_RS08790 PF02464 Competence-damaged protein CHH28_RS08795 PF00154 recA bacterial DNA recombination protein CHH28_RS08800 PF02631 RecX family CHH28_RS08810 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS08820 PF00561 alpha/beta hydrolase fold CHH28_RS08835 PF02272 DHHA1 domain CHH28_RS08835 PF01411 tRNA synthetases class II (A) CHH28_RS08835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CHH28_RS08840 PF00696 Amino acid kinase family CHH28_RS08840 PF01842 ACT domain CHH28_RS08840 PF13840 ACT domain CHH28_RS08845 PF02599 Global regulator protein family CHH28_RS08895 PF00106 short chain dehydrogenase CHH28_RS08910 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CHH28_RS08915 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CHH28_RS08920 PF03480 Bacterial extracellular solute-binding protein, family 7 CHH28_RS08925 PF13673 Acetyltransferase (GNAT) domain CHH28_RS08950 PF06055 Exopolysaccharide synthesis, ExoD CHH28_RS08965 PF01810 LysE type translocator CHH28_RS08970 PF01037 Lrp/AsnC ligand binding domain CHH28_RS08970 PF13404 AsnC-type helix-turn-helix domain CHH28_RS08980 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CHH28_RS08980 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CHH28_RS08995 PF02515 CoA-transferase family III CHH28_RS09015 PF00072 Response regulator receiver domain CHH28_RS09015 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS09025 PF00501 AMP-binding enzyme CHH28_RS09025 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS09065 PF02625 XdhC and CoxI family CHH28_RS09065 PF13478 XdhC Rossmann domain CHH28_RS09070 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CHH28_RS09075 PF01799 [2Fe-2S] binding domain CHH28_RS09075 PF00111 2Fe-2S iron-sulfur cluster binding domain CHH28_RS09085 PF03440 Aerolysin/Pertussis toxin (APT) domain CHH28_RS09085 PF01117 Aerolysin toxin CHH28_RS09095 PF01177 Asp/Glu/Hydantoin racemase CHH28_RS09100 PF01810 LysE type translocator CHH28_RS09135 PF04972 BON domain CHH28_RS09135 PF13629 Pilus formation protein N terminal region CHH28_RS09135 PF00263 Bacterial type II and III secretion system protein CHH28_RS09150 PF00437 Type II/IV secretion system protein CHH28_RS09185 PF08534 Redoxin CHH28_RS09200 PF05656 Protein of unknown function (DUF805) CHH28_RS09225 PF05547 Immune inhibitor A peptidase M6 CHH28_RS09225 PF00801 PKD domain CHH28_RS09230 PF18416 N-acetylglucosamine binding protein domain 2 CHH28_RS09230 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CHH28_RS09240 PF01483 Proprotein convertase P-domain CHH28_RS09240 PF00082 Subtilase family CHH28_RS09255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS09255 PF03466 LysR substrate binding domain CHH28_RS09260 PF07690 Major Facilitator Superfamily CHH28_RS09265 PF00672 HAMP domain CHH28_RS09265 PF02743 Cache domain CHH28_RS09265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS09270 PF00700 Bacterial flagellin C-terminal helical region CHH28_RS09270 PF00669 Bacterial flagellin N-terminal helical region CHH28_RS09280 PF12848 ABC transporter CHH28_RS09280 PF00005 ABC transporter CHH28_RS09290 PF00561 alpha/beta hydrolase fold CHH28_RS09300 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS09300 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS09300 PF00563 EAL domain CHH28_RS09305 PF00005 ABC transporter CHH28_RS09305 PF12848 ABC transporter CHH28_RS09310 PF07238 PilZ domain CHH28_RS09315 PF01557 Fumarylacetoacetate (FAA) hydrolase family CHH28_RS09320 PF00994 Probable molybdopterin binding domain CHH28_RS09320 PF03453 MoeA N-terminal region (domain I and II) CHH28_RS09320 PF03454 MoeA C-terminal region (domain IV) CHH28_RS09325 PF00436 Single-strand binding protein family CHH28_RS09330 PF07690 Major Facilitator Superfamily CHH28_RS09335 PF00196 Bacterial regulatory proteins, luxR family CHH28_RS09340 PF17755 UvrA DNA-binding domain CHH28_RS09340 PF17760 UvrA interaction domain CHH28_RS09360 PF00072 Response regulator receiver domain CHH28_RS09360 PF00211 Adenylate and Guanylate cyclase catalytic domain CHH28_RS09370 PF00563 EAL domain CHH28_RS09370 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS09370 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS09380 PF04055 Radical SAM superfamily CHH28_RS09385 PF08207 Elongation factor P (EF-P) KOW-like domain CHH28_RS09385 PF01132 Elongation factor P (EF-P) OB domain CHH28_RS09385 PF09285 Elongation factor P, C-terminal CHH28_RS09390 PF00152 tRNA synthetases class II (D, K and N) CHH28_RS09395 PF02666 Phosphatidylserine decarboxylase CHH28_RS09400 PF00581 Rhodanese-like domain CHH28_RS09410 PF01618 MotA/TolQ/ExbB proton channel family CHH28_RS09415 PF00691 OmpA family CHH28_RS09415 PF13677 Membrane MotB of proton-channel complex MotA/MotB CHH28_RS09420 PF03193 RsgA GTPase CHH28_RS09425 PF00929 Exonuclease CHH28_RS09435 PF17151 Periplasmic sensor domain CHH28_RS09435 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS09440 PF08331 Domain of unknown function (DUF1730) CHH28_RS09445 PF01256 Carbohydrate kinase CHH28_RS09445 PF03853 YjeF-related protein N-terminus CHH28_RS09450 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CHH28_RS09455 PF11741 AMIN domain CHH28_RS09455 PF01520 N-acetylmuramoyl-L-alanine amidase CHH28_RS09460 PF08676 MutL C terminal dimerisation domain CHH28_RS09460 PF01119 DNA mismatch repair protein, C-terminal domain CHH28_RS09470 PF17209 Hfq protein CHH28_RS09475 PF16360 GTP-binding GTPase Middle Region CHH28_RS09475 PF13167 GTP-binding GTPase N-terminal CHH28_RS09475 PF01926 50S ribosome-binding GTPase CHH28_RS09480 PF01145 SPFH domain / Band 7 family CHH28_RS09480 PF12221 Bacterial membrane protein N terminal CHH28_RS09485 PF01145 SPFH domain / Band 7 family CHH28_RS09495 PF13393 Histidyl-tRNA synthetase CHH28_RS09500 PF00709 Adenylosuccinate synthetase CHH28_RS09510 PF00085 Thioredoxin CHH28_RS09515 PF11412 Disulphide bond corrector protein DsbC CHH28_RS09515 PF02683 Cytochrome C biogenesis protein transmembrane region CHH28_RS09520 PF00348 Polyprenyl synthetase CHH28_RS09525 PF00829 Ribosomal prokaryotic L21 protein CHH28_RS09530 PF01016 Ribosomal L27 protein CHH28_RS09535 PF01018 GTP1/OBG CHH28_RS09535 PF01926 50S ribosome-binding GTPase CHH28_RS09540 PF01472 PUA domain CHH28_RS09540 PF00696 Amino acid kinase family CHH28_RS09545 PF00793 DAHP synthetase I family CHH28_RS09550 PF01649 Ribosomal protein S20 CHH28_RS09555 PF03023 Lipid II flippase MurJ CHH28_RS09560 PF01687 Riboflavin kinase CHH28_RS09560 PF06574 FAD synthetase CHH28_RS09565 PF08264 Anticodon-binding domain of tRNA CHH28_RS09565 PF06827 Zinc finger found in FPG and IleRS CHH28_RS09565 PF00133 tRNA synthetases class I (I, L, M and V) CHH28_RS09570 PF01252 Signal peptidase (SPase) II CHH28_RS09575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHH28_RS09580 PF02401 LytB protein CHH28_RS09600 PF07963 Prokaryotic N-terminal methylation motif CHH28_RS09600 PF12019 Type II transport protein GspH CHH28_RS09620 PF00158 Sigma-54 interaction domain CHH28_RS09620 PF02954 Bacterial regulatory protein, Fis family CHH28_RS09620 PF00072 Response regulator receiver domain CHH28_RS09625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS09625 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS09630 PF02540 NAD synthase CHH28_RS09630 PF00795 Carbon-nitrogen hydrolase CHH28_RS09640 PF13525 Outer membrane lipoprotein CHH28_RS09645 PF01479 S4 domain CHH28_RS09645 PF00849 RNA pseudouridylate synthase CHH28_RS09650 PF02578 Multi-copper polyphenol oxidoreductase laccase CHH28_RS09660 PF00205 Thiamine pyrophosphate enzyme, central domain CHH28_RS09660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHH28_RS09660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHH28_RS09665 PF10369 Small subunit of acetolactate synthase CHH28_RS09675 PF03232 Ubiquinone biosynthesis protein COQ7 CHH28_RS09680 PF00004 ATPase family associated with various cellular activities (AAA) CHH28_RS09680 PF17862 AAA+ lid domain CHH28_RS09680 PF06480 FtsH Extracellular CHH28_RS09680 PF01434 Peptidase family M41 CHH28_RS09685 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS09685 PF00989 PAS fold CHH28_RS09685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS09685 PF01627 Hpt domain CHH28_RS09685 PF18415 Histidine kinase receptor ArcB trans-membrane domain CHH28_RS09685 PF00072 Response regulator receiver domain CHH28_RS09690 PF02843 Phosphoribosylglycinamide synthetase, C domain CHH28_RS09690 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CHH28_RS09690 PF02844 Phosphoribosylglycinamide synthetase, N domain CHH28_RS09695 PF02142 MGS-like domain CHH28_RS09695 PF01808 AICARFT/IMPCHase bienzyme CHH28_RS09700 PF02954 Bacterial regulatory protein, Fis family CHH28_RS09705 PF01207 Dihydrouridine synthase (Dus) CHH28_RS09720 PF01220 Dehydroquinase class II CHH28_RS09725 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS09735 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS09735 PF00563 EAL domain CHH28_RS09735 PF00498 FHA domain CHH28_RS09745 PF03884 DNA gyrase inhibitor YacG CHH28_RS09750 PF01121 Dephospho-CoA kinase CHH28_RS09755 PF06750 Bacterial Peptidase A24 N-terminal domain CHH28_RS09755 PF01478 Type IV leader peptidase family CHH28_RS09760 PF00482 Type II secretion system (T2SS), protein F CHH28_RS09765 PF00437 Type II/IV secretion system protein CHH28_RS09765 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CHH28_RS09770 PF07963 Prokaryotic N-terminal methylation motif CHH28_RS09770 PF00114 Pilin (bacterial filament) CHH28_RS09775 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CHH28_RS09775 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CHH28_RS09780 PF01235 Sodium:alanine symporter family CHH28_RS09785 PF01510 N-acetylmuramoyl-L-alanine amidase CHH28_RS09795 PF00480 ROK family CHH28_RS09815 PF01497 Periplasmic binding protein CHH28_RS09825 PF06039 Malate:quinone oxidoreductase (Mqo) CHH28_RS09840 PF00571 CBS domain CHH28_RS09845 PF00743 Flavin-binding monooxygenase-like CHH28_RS09850 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CHH28_RS09865 PF02515 CoA-transferase family III CHH28_RS09870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS09870 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS09870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS09875 PF00108 Thiolase, N-terminal domain CHH28_RS09875 PF02803 Thiolase, C-terminal domain CHH28_RS09880 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CHH28_RS09880 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CHH28_RS09880 PF00378 Enoyl-CoA hydratase/isomerase CHH28_RS09890 PF00580 UvrD/REP helicase N-terminal domain CHH28_RS09890 PF13361 UvrD-like helicase C-terminal domain CHH28_RS09900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHH28_RS09905 PF18081 Fanconi anemia-associated nuclease SAP domain CHH28_RS09905 PF08774 VRR-NUC domain CHH28_RS09915 PF00682 HMGL-like CHH28_RS09915 PF08502 LeuA allosteric (dimerisation) domain CHH28_RS09920 PF01037 Lrp/AsnC ligand binding domain CHH28_RS09925 PF01758 Sodium Bile acid symporter family CHH28_RS09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS09930 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS09950 PF01253 Translation initiation factor SUI1 CHH28_RS09960 PF01618 MotA/TolQ/ExbB proton channel family CHH28_RS09965 PF14437 MafB19-like deaminase CHH28_RS09985 PF02525 Flavodoxin-like fold CHH28_RS09990 PF03466 LysR substrate binding domain CHH28_RS09990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS09995 PF00561 alpha/beta hydrolase fold CHH28_RS10000 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH28_RS10000 PF01464 Transglycosylase SLT domain CHH28_RS10005 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CHH28_RS10005 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CHH28_RS10005 PF02769 AIR synthase related protein, C-terminal domain CHH28_RS10015 PF04411 PD-(D/E)XK nuclease superfamily CHH28_RS10025 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CHH28_RS10030 PF01329 Pterin 4 alpha carbinolamine dehydratase CHH28_RS10035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS10035 PF03466 LysR substrate binding domain CHH28_RS10045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHH28_RS10055 PF02798 Glutathione S-transferase, N-terminal domain CHH28_RS10055 PF14497 Glutathione S-transferase, C-terminal domain CHH28_RS10060 PF00282 Pyridoxal-dependent decarboxylase conserved domain CHH28_RS10090 PF01523 Putative modulator of DNA gyrase CHH28_RS10105 PF00072 Response regulator receiver domain CHH28_RS10105 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS10110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS10110 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS10125 PF18381 YcaO cyclodehydratase C-terminal domain CHH28_RS10125 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CHH28_RS10130 PF01590 GAF domain CHH28_RS10130 PF00158 Sigma-54 interaction domain CHH28_RS10165 PF00245 Alkaline phosphatase CHH28_RS10170 PF00886 Ribosomal protein S16 CHH28_RS10175 PF05239 PRC-barrel domain CHH28_RS10175 PF01782 RimM N-terminal domain CHH28_RS10180 PF01746 tRNA (Guanine-1)-methyltransferase CHH28_RS10185 PF01245 Ribosomal protein L19 CHH28_RS10190 PF10411 Disulfide bond isomerase protein N-terminus CHH28_RS10190 PF13098 Thioredoxin-like domain CHH28_RS10195 PF00849 RNA pseudouridylate synthase CHH28_RS10215 PF00999 Sodium/hydrogen exchanger family CHH28_RS10215 PF02254 TrkA-N domain CHH28_RS10220 PF03641 Possible lysine decarboxylase CHH28_RS10230 PF02562 PhoH-like protein CHH28_RS10230 PF13638 PIN domain CHH28_RS10255 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS10265 PF01435 Peptidase family M48 CHH28_RS10265 PF13181 Tetratricopeptide repeat CHH28_RS10270 PF01906 Putative heavy-metal-binding CHH28_RS10275 PF01906 Putative heavy-metal-binding CHH28_RS10280 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS10280 PF09317 Domain of unknown function (DUF1974) CHH28_RS10280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS10280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS10300 PF00375 Sodium:dicarboxylate symporter family CHH28_RS10310 PF07963 Prokaryotic N-terminal methylation motif CHH28_RS10320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS10320 PF03466 LysR substrate binding domain CHH28_RS10355 PF07662 Na+ dependent nucleoside transporter C-terminus CHH28_RS10355 PF07670 Nucleoside recognition CHH28_RS10355 PF01773 Na+ dependent nucleoside transporter N-terminus CHH28_RS10360 PF00485 Phosphoribulokinase / Uridine kinase family CHH28_RS10380 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS10380 PF13977 BetI-type transcriptional repressor, C-terminal CHH28_RS10385 PF01327 Polypeptide deformylase CHH28_RS10400 PF01588 Putative tRNA binding domain CHH28_RS10400 PF09334 tRNA synthetases class I (M) CHH28_RS10405 PF01595 Cyclin M transmembrane N-terminal domain CHH28_RS10405 PF00571 CBS domain CHH28_RS10405 PF03471 Transporter associated domain CHH28_RS10415 PF00448 SRP54-type protein, GTPase domain CHH28_RS10415 PF02881 SRP54-type protein, helical bundle domain CHH28_RS10415 PF02978 Signal peptide binding domain CHH28_RS10420 PF01894 Uncharacterised protein family UPF0047 CHH28_RS10440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS10440 PF03466 LysR substrate binding domain CHH28_RS10470 PF13426 PAS domain CHH28_RS10470 PF08447 PAS fold CHH28_RS10470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS10480 PF00271 Helicase conserved C-terminal domain CHH28_RS10480 PF00270 DEAD/DEAH box helicase CHH28_RS10485 PF13533 Biotin-lipoyl like CHH28_RS10490 PF00873 AcrB/AcrD/AcrF family CHH28_RS10495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CHH28_RS10500 PF00501 AMP-binding enzyme CHH28_RS10500 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS10510 PF00108 Thiolase, N-terminal domain CHH28_RS10510 PF02803 Thiolase, C-terminal domain CHH28_RS10515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS10515 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS10515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS10520 PF00106 short chain dehydrogenase CHH28_RS10530 PF00005 ABC transporter CHH28_RS10560 PF00166 Chaperonin 10 Kd subunit CHH28_RS10565 PF00118 TCP-1/cpn60 chaperonin family CHH28_RS10570 PF01494 FAD binding domain CHH28_RS10600 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CHH28_RS10600 PF12833 Helix-turn-helix domain CHH28_RS10605 PF00111 2Fe-2S iron-sulfur cluster binding domain CHH28_RS10610 PF00067 Cytochrome P450 CHH28_RS10625 PF12833 Helix-turn-helix domain CHH28_RS10625 PF01965 DJ-1/PfpI family CHH28_RS10630 PF00561 alpha/beta hydrolase fold CHH28_RS10650 PF03313 Serine dehydratase alpha chain CHH28_RS10650 PF03315 Serine dehydratase beta chain CHH28_RS10660 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CHH28_RS10695 PF01209 ubiE/COQ5 methyltransferase family CHH28_RS10700 PF16363 GDP-mannose 4,6 dehydratase CHH28_RS10705 PF12848 ABC transporter CHH28_RS10705 PF00005 ABC transporter CHH28_RS10715 PF13419 Haloacid dehalogenase-like hydrolase CHH28_RS10730 PF13419 Haloacid dehalogenase-like hydrolase CHH28_RS10740 PF00582 Universal stress protein family CHH28_RS10745 PF01740 STAS domain CHH28_RS10745 PF00916 Sulfate permease family CHH28_RS10775 PF00664 ABC transporter transmembrane region CHH28_RS10775 PF00005 ABC transporter CHH28_RS10790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHH28_RS10820 PF00892 EamA-like transporter family CHH28_RS10825 PF06445 GyrI-like small molecule binding domain CHH28_RS10825 PF12833 Helix-turn-helix domain CHH28_RS10830 PF07715 TonB-dependent Receptor Plug Domain CHH28_RS10840 PF13683 Integrase core domain CHH28_RS10840 PF13276 HTH-like domain CHH28_RS10855 PF01527 Transposase CHH28_RS10860 PF01527 Transposase CHH28_RS10870 PF01189 16S rRNA methyltransferase RsmB/F CHH28_RS10870 PF01029 NusB family CHH28_RS10875 PF02311 AraC-like ligand binding domain CHH28_RS10875 PF12833 Helix-turn-helix domain CHH28_RS10895 PF05724 Thiopurine S-methyltransferase (TPMT) CHH28_RS10900 PF18389 TrmO C-terminal domain CHH28_RS10900 PF01980 tRNA-methyltransferase O CHH28_RS10905 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CHH28_RS10915 PF00202 Aminotransferase class-III CHH28_RS10920 PF13746 4Fe-4S dicluster domain CHH28_RS10920 PF12801 4Fe-4S binding domain CHH28_RS10920 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CHH28_RS10935 PF01590 GAF domain CHH28_RS10935 PF00158 Sigma-54 interaction domain CHH28_RS11010 PF00462 Glutaredoxin CHH28_RS11010 PF08534 Redoxin CHH28_RS11025 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS11030 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS11035 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH28_RS11040 PF00005 ABC transporter CHH28_RS11060 PF16655 PhoD-like phosphatase, N-terminal domain CHH28_RS11060 PF09423 PhoD-like phosphatase CHH28_RS11065 PF00561 alpha/beta hydrolase fold CHH28_RS11075 PF00378 Enoyl-CoA hydratase/isomerase CHH28_RS11090 PF01571 Aminomethyltransferase folate-binding domain CHH28_RS11095 PF03937 Flavinator of succinate dehydrogenase CHH28_RS11105 PF00890 FAD binding domain CHH28_RS11105 PF02910 Fumarate reductase flavoprotein C-term CHH28_RS11110 PF04542 Sigma-70 region 2 CHH28_RS11110 PF08281 Sigma-70, region 4 CHH28_RS11115 PF03872 Anti sigma-E protein RseA, N-terminal domain CHH28_RS11115 PF03873 Anti sigma-E protein RseA, C-terminal domain CHH28_RS11120 PF03888 MucB/RseB N-terminal domain CHH28_RS11120 PF17188 MucB/RseB C-terminal domain CHH28_RS11130 PF13180 PDZ domain CHH28_RS11135 PF00679 Elongation factor G C-terminus CHH28_RS11135 PF06421 GTP-binding protein LepA C-terminus CHH28_RS11135 PF00009 Elongation factor Tu GTP binding domain CHH28_RS11145 PF14622 Ribonuclease-III-like CHH28_RS11145 PF00035 Double-stranded RNA binding motif CHH28_RS11150 PF07650 KH domain CHH28_RS11150 PF01926 50S ribosome-binding GTPase CHH28_RS11155 PF11967 Recombination protein O N terminal CHH28_RS11155 PF02565 Recombination protein O C terminal CHH28_RS11160 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CHH28_RS11165 PF01648 4'-phosphopantetheinyl transferase superfamily CHH28_RS11170 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS11170 PF01627 Hpt domain CHH28_RS11170 PF00072 Response regulator receiver domain CHH28_RS11170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHH28_RS11170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS11170 PF00672 HAMP domain CHH28_RS11175 PF00291 Pyridoxal-phosphate dependent enzyme CHH28_RS11180 PF01938 TRAM domain CHH28_RS11180 PF05958 tRNA (Uracil-5-)-methyltransferase CHH28_RS11185 PF04607 Region found in RelA / SpoT proteins CHH28_RS11185 PF02824 TGS domain CHH28_RS11185 PF13291 ACT domain CHH28_RS11190 PF03819 MazG nucleotide pyrophosphohydrolase domain CHH28_RS11195 PF00311 Phosphoenolpyruvate carboxylase CHH28_RS11200 PF05191 Adenylate kinase, active site lid CHH28_RS11210 PF00814 Glycoprotease family CHH28_RS11215 PF02673 Bacitracin resistance protein BacA CHH28_RS11220 PF04445 Putative SAM-dependent methyltransferase CHH28_RS11225 PF01553 Acyltransferase CHH28_RS11230 PF00005 ABC transporter CHH28_RS11250 PF00313 'Cold-shock' DNA-binding domain CHH28_RS11255 PF00459 Inositol monophosphatase family CHH28_RS11260 PF00588 SpoU rRNA Methylase family CHH28_RS11265 PF00132 Bacterial transferase hexapeptide (six repeats) CHH28_RS11270 PF02082 Transcriptional regulator CHH28_RS11275 PF00266 Aminotransferase class-V CHH28_RS11280 PF00334 Nucleoside diphosphate kinase CHH28_RS11285 PF04055 Radical SAM superfamily CHH28_RS11295 PF04551 GcpE protein CHH28_RS11300 PF13393 Histidyl-tRNA synthetase CHH28_RS11300 PF03129 Anticodon binding domain CHH28_RS11305 PF09976 Tetratricopeptide repeat-like domain CHH28_RS11310 PF13360 PQQ-like domain CHH28_RS11315 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CHH28_RS11315 PF01926 50S ribosome-binding GTPase CHH28_RS11320 PF00672 HAMP domain CHH28_RS11320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS11325 PF00672 HAMP domain CHH28_RS11325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS11330 PF00378 Enoyl-CoA hydratase/isomerase CHH28_RS11335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS11335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS11335 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS11335 PF12806 Acetyl-CoA dehydrogenase C-terminal like CHH28_RS11340 PF12833 Helix-turn-helix domain CHH28_RS11340 PF02311 AraC-like ligand binding domain CHH28_RS11345 PF04304 Protein of unknown function (DUF454) CHH28_RS11350 PF12697 Alpha/beta hydrolase family CHH28_RS11355 PF12833 Helix-turn-helix domain CHH28_RS11355 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CHH28_RS11360 PF00753 Metallo-beta-lactamase superfamily CHH28_RS11360 PF14864 Alkyl sulfatase C-terminal CHH28_RS11360 PF14863 Alkyl sulfatase dimerisation CHH28_RS11370 PF02627 Carboxymuconolactone decarboxylase family CHH28_RS11375 PF03466 LysR substrate binding domain CHH28_RS11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS11395 PF17932 Tetracyclin repressor-like, C-terminal domain CHH28_RS11395 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS11415 PF13609 Gram-negative porin CHH28_RS11420 PF01026 TatD related DNase CHH28_RS11430 PF00270 DEAD/DEAH box helicase CHH28_RS11430 PF00271 Helicase conserved C-terminal domain CHH28_RS11435 PF08335 GlnD PII-uridylyltransferase CHH28_RS11435 PF01966 HD domain CHH28_RS11435 PF01842 ACT domain CHH28_RS11435 PF01909 Nucleotidyltransferase domain CHH28_RS11440 PF00557 Metallopeptidase family M24 CHH28_RS11445 PF00318 Ribosomal protein S2 CHH28_RS11450 PF00889 Elongation factor TS CHH28_RS11455 PF00696 Amino acid kinase family CHH28_RS11460 PF01765 Ribosome recycling factor CHH28_RS11465 PF01255 Putative undecaprenyl diphosphate synthase CHH28_RS11475 PF13288 DXP reductoisomerase C-terminal domain CHH28_RS11475 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CHH28_RS11475 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CHH28_RS11480 PF02163 Peptidase family M50 CHH28_RS11480 PF13180 PDZ domain CHH28_RS11480 PF17820 PDZ domain CHH28_RS11485 PF01103 Surface antigen CHH28_RS11485 PF07244 Surface antigen variable number repeat CHH28_RS11495 PF00132 Bacterial transferase hexapeptide (six repeats) CHH28_RS11495 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CHH28_RS11500 PF07977 FabA-like domain CHH28_RS11505 PF00132 Bacterial transferase hexapeptide (six repeats) CHH28_RS11505 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CHH28_RS11510 PF02684 Lipid-A-disaccharide synthetase CHH28_RS11515 PF01351 Ribonuclease HII CHH28_RS11555 PF00158 Sigma-54 interaction domain CHH28_RS11555 PF00072 Response regulator receiver domain CHH28_RS11555 PF02954 Bacterial regulatory protein, Fis family CHH28_RS11565 PF00072 Response regulator receiver domain CHH28_RS11565 PF08448 PAS fold CHH28_RS11565 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS11565 PF13188 PAS domain CHH28_RS11570 PF00463 Isocitrate lyase family CHH28_RS11575 PF00962 Adenosine/AMP deaminase CHH28_RS11585 PF00378 Enoyl-CoA hydratase/isomerase CHH28_RS11590 PF00474 Sodium:solute symporter family CHH28_RS11625 PF01618 MotA/TolQ/ExbB proton channel family CHH28_RS11630 PF01618 MotA/TolQ/ExbB proton channel family CHH28_RS11635 PF02472 Biopolymer transport protein ExbD/TolR CHH28_RS11640 PF03544 Gram-negative bacterial TonB protein C-terminal CHH28_RS11655 PF14821 Threonine synthase N terminus CHH28_RS11655 PF00291 Pyridoxal-phosphate dependent enzyme CHH28_RS11665 PF00210 Ferritin-like domain CHH28_RS11670 PF00210 Ferritin-like domain CHH28_RS11675 PF18030 RimK PreATP-grasp domain CHH28_RS11675 PF08443 RimK-like ATP-grasp domain CHH28_RS11685 PF08443 RimK-like ATP-grasp domain CHH28_RS11685 PF18030 RimK PreATP-grasp domain CHH28_RS11690 PF08668 HDOD domain CHH28_RS11695 PF06945 Protein of unknown function (DUF1289) CHH28_RS11700 PF00313 'Cold-shock' DNA-binding domain CHH28_RS11705 PF01758 Sodium Bile acid symporter family CHH28_RS11710 PF01613 Flavin reductase like domain CHH28_RS11715 PF01384 Phosphate transporter family CHH28_RS11720 PF07664 Ferrous iron transport protein B C terminus CHH28_RS11720 PF07670 Nucleoside recognition CHH28_RS11720 PF02421 Ferrous iron transport protein B CHH28_RS11720 PF17910 FeoB cytosolic helical domain CHH28_RS11735 PF08206 Ribonuclease B OB domain CHH28_RS11735 PF00575 S1 RNA binding domain CHH28_RS11735 PF00773 RNB domain CHH28_RS11740 PF09423 PhoD-like phosphatase CHH28_RS11740 PF16655 PhoD-like phosphatase, N-terminal domain CHH28_RS11755 PF01625 Peptide methionine sulfoxide reductase CHH28_RS11760 PF13614 AAA domain CHH28_RS11770 PF01026 TatD related DNase CHH28_RS11780 PF07044 Protein of unknown function (DUF1329) CHH28_RS11785 PF01464 Transglycosylase SLT domain CHH28_RS11785 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CHH28_RS11815 PF17946 RecC C-terminal domain CHH28_RS11820 PF13361 UvrD-like helicase C-terminal domain CHH28_RS11820 PF00580 UvrD/REP helicase N-terminal domain CHH28_RS11820 PF12705 PD-(D/E)XK nuclease superfamily CHH28_RS11825 PF13538 UvrD-like helicase C-terminal domain CHH28_RS11835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS11840 PF00072 Response regulator receiver domain CHH28_RS11850 PF07194 P2 response regulator binding domain CHH28_RS11850 PF01627 Hpt domain CHH28_RS11850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS11850 PF01584 CheW-like domain CHH28_RS11850 PF02895 Signal transducing histidine kinase, homodimeric domain CHH28_RS11860 PF02203 Tar ligand binding domain homologue CHH28_RS11860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS11860 PF00672 HAMP domain CHH28_RS11865 PF01584 CheW-like domain CHH28_RS11870 PF01739 CheR methyltransferase, SAM binding domain CHH28_RS11870 PF03705 CheR methyltransferase, all-alpha domain CHH28_RS11875 PF03975 CheD chemotactic sensory transduction CHH28_RS11880 PF00072 Response regulator receiver domain CHH28_RS11880 PF01339 CheB methylesterase CHH28_RS11885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CHH28_RS11885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHH28_RS11885 PF03129 Anticodon binding domain CHH28_RS11885 PF02824 TGS domain CHH28_RS11890 PF05198 Translation initiation factor IF-3, N-terminal domain CHH28_RS11890 PF00707 Translation initiation factor IF-3, C-terminal domain CHH28_RS11895 PF01632 Ribosomal protein L35 CHH28_RS11900 PF00453 Ribosomal protein L20 CHH28_RS11905 PF01409 tRNA synthetases class II core domain (F) CHH28_RS11905 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CHH28_RS11910 PF03483 B3/4 domain CHH28_RS11910 PF03484 tRNA synthetase B5 domain CHH28_RS11910 PF03147 Ferredoxin-fold anticodon binding domain CHH28_RS11910 PF01588 Putative tRNA binding domain CHH28_RS11910 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CHH28_RS11915 PF00216 Bacterial DNA-binding protein CHH28_RS11960 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS11960 PF00501 AMP-binding enzyme CHH28_RS11965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS11965 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS11965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS11970 PF02770 Acyl-CoA dehydrogenase, middle domain CHH28_RS11970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHH28_RS11970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHH28_RS11980 PF03883 Peroxide stress protein YaaA CHH28_RS11995 PF17757 UvrB interaction domain CHH28_RS11995 PF00271 Helicase conserved C-terminal domain CHH28_RS11995 PF03461 TRCF domain CHH28_RS11995 PF02559 CarD-like/TRCF domain CHH28_RS11995 PF00270 DEAD/DEAH box helicase CHH28_RS12000 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CHH28_RS12000 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CHH28_RS12005 PF11973 NQRA C-terminal domain CHH28_RS12005 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CHH28_RS12010 PF03116 NQR2, RnfD, RnfE family CHH28_RS12015 PF04205 FMN-binding domain CHH28_RS12020 PF02508 Rnf-Nqr subunit, membrane protein CHH28_RS12025 PF02508 Rnf-Nqr subunit, membrane protein CHH28_RS12030 PF00111 2Fe-2S iron-sulfur cluster binding domain CHH28_RS12030 PF00175 Oxidoreductase NAD-binding domain CHH28_RS12030 PF00970 Oxidoreductase FAD-binding domain CHH28_RS12040 PF00106 short chain dehydrogenase CHH28_RS12050 PF03435 Saccharopine dehydrogenase NADP binding domain CHH28_RS12055 PF03466 LysR substrate binding domain CHH28_RS12055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS12060 PF07969 Amidohydrolase family CHH28_RS12070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHH28_RS12070 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CHH28_RS12075 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CHH28_RS12075 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CHH28_RS12080 PF00676 Dehydrogenase E1 component CHH28_RS12085 PF02779 Transketolase, pyrimidine binding domain CHH28_RS12085 PF02780 Transketolase, C-terminal domain CHH28_RS12090 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CHH28_RS12090 PF02817 e3 binding domain CHH28_RS12090 PF00364 Biotin-requiring enzyme CHH28_RS12110 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CHH28_RS12110 PF12833 Helix-turn-helix domain CHH28_RS12115 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS12115 PF00501 AMP-binding enzyme CHH28_RS12125 PF03922 OmpW family CHH28_RS12130 PF13091 PLD-like domain CHH28_RS12130 PF13396 Phospholipase_D-nuclease N-terminal CHH28_RS12135 PF01227 GTP cyclohydrolase I CHH28_RS12140 PF01177 Asp/Glu/Hydantoin racemase CHH28_RS12145 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS12145 PF07694 5TMR of 5TMR-LYT CHH28_RS12150 PF03976 Polyphosphate kinase 2 (PPK2) CHH28_RS12175 PF01926 50S ribosome-binding GTPase CHH28_RS12190 PF01722 BolA-like protein CHH28_RS12195 PF01852 START domain CHH28_RS12200 PF12849 PBP superfamily domain CHH28_RS12230 PF07728 AAA domain (dynein-related subfamily) CHH28_RS12245 PF05762 VWA domain containing CoxE-like protein CHH28_RS12265 PF16177 Acetyl-coenzyme A synthetase N-terminus CHH28_RS12265 PF00501 AMP-binding enzyme CHH28_RS12265 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS12270 PF00196 Bacterial regulatory proteins, luxR family CHH28_RS12270 PF00072 Response regulator receiver domain CHH28_RS12275 PF00009 Elongation factor Tu GTP binding domain CHH28_RS12280 PF01507 Phosphoadenosine phosphosulfate reductase family CHH28_RS12285 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CHH28_RS12290 PF03969 AFG1-like ATPase CHH28_RS12300 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS12300 PF13977 BetI-type transcriptional repressor, C-terminal CHH28_RS12305 PF00171 Aldehyde dehydrogenase family CHH28_RS12310 PF05199 GMC oxidoreductase CHH28_RS12310 PF00732 GMC oxidoreductase CHH28_RS12315 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CHH28_RS12320 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS12325 PF00571 CBS domain CHH28_RS12325 PF00005 ABC transporter CHH28_RS12335 PF00106 short chain dehydrogenase CHH28_RS12340 PF01425 Amidase CHH28_RS12345 PF02424 ApbE family CHH28_RS12360 PF00578 AhpC/TSA family CHH28_RS12390 PF02547 Queuosine biosynthesis protein CHH28_RS12395 PF01702 Queuine tRNA-ribosyltransferase CHH28_RS12400 PF02699 Preprotein translocase subunit CHH28_RS12405 PF13721 SecD export protein N-terminal TM region CHH28_RS12405 PF07549 SecD/SecF GG Motif CHH28_RS12405 PF02355 Protein export membrane protein CHH28_RS12410 PF02355 Protein export membrane protein CHH28_RS12410 PF07549 SecD/SecF GG Motif CHH28_RS12415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS12415 PF00672 HAMP domain CHH28_RS12420 PF01923 Cobalamin adenosyltransferase CHH28_RS12435 PF02558 Ketopantoate reductase PanE/ApbA CHH28_RS12435 PF08546 Ketopantoate reductase PanE/ApbA C terminal CHH28_RS12445 PF04461 Protein of unknown function (DUF520) CHH28_RS12450 PF07690 Major Facilitator Superfamily CHH28_RS12455 PF02028 BCCT, betaine/carnitine/choline family transporter CHH28_RS12460 PF00873 AcrB/AcrD/AcrF family CHH28_RS12465 PF13533 Biotin-lipoyl like CHH28_RS12470 PF02146 Sir2 family CHH28_RS12475 PF01734 Patatin-like phospholipase CHH28_RS12485 PF00072 Response regulator receiver domain CHH28_RS12485 PF00989 PAS fold CHH28_RS12485 PF01627 Hpt domain CHH28_RS12485 PF18415 Histidine kinase receptor ArcB trans-membrane domain CHH28_RS12485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS12485 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS12495 PF12697 Alpha/beta hydrolase family CHH28_RS12500 PF08411 Exonuclease C-terminal CHH28_RS12500 PF00929 Exonuclease CHH28_RS12505 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CHH28_RS12505 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CHH28_RS12510 PF03193 RsgA GTPase CHH28_RS12520 PF00672 HAMP domain CHH28_RS12520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS12525 PF01207 Dihydrouridine synthase (Dus) CHH28_RS12530 PF04277 Oxaloacetate decarboxylase, gamma chain CHH28_RS12535 PF02436 Conserved carboxylase domain CHH28_RS12535 PF00364 Biotin-requiring enzyme CHH28_RS12535 PF00682 HMGL-like CHH28_RS12540 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CHH28_RS12545 PF00005 ABC transporter CHH28_RS12545 PF08402 TOBE domain CHH28_RS12550 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS12555 PF13416 Bacterial extracellular solute-binding protein CHH28_RS12560 PF07499 RuvA, C-terminal domain CHH28_RS12560 PF01330 RuvA N terminal domain CHH28_RS12565 PF05496 Holliday junction DNA helicase RuvB P-loop domain CHH28_RS12565 PF05491 RuvB C-terminal winged helix domain CHH28_RS12565 PF17864 RuvB AAA lid domain CHH28_RS12570 PF03061 Thioesterase superfamily CHH28_RS12575 PF01618 MotA/TolQ/ExbB proton channel family CHH28_RS12580 PF02472 Biopolymer transport protein ExbD/TolR CHH28_RS12585 PF03544 Gram-negative bacterial TonB protein C-terminal CHH28_RS12590 PF07676 WD40-like Beta Propeller Repeat CHH28_RS12590 PF04052 TolB amino-terminal domain CHH28_RS12595 PF00691 OmpA family CHH28_RS12615 PF02445 Quinolinate synthetase A protein CHH28_RS12620 PF13181 Tetratricopeptide repeat CHH28_RS12620 PF01435 Peptidase family M48 CHH28_RS12625 PF00581 Rhodanese-like domain CHH28_RS12625 PF01206 Sulfurtransferase TusA CHH28_RS12630 PF01594 AI-2E family transporter CHH28_RS12635 PF00701 Dihydrodipicolinate synthetase family CHH28_RS12645 PF00753 Metallo-beta-lactamase superfamily CHH28_RS12650 PF01259 SAICAR synthetase CHH28_RS12665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHH28_RS12665 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CHH28_RS12680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHH28_RS12680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHH28_RS12680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHH28_RS12680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHH28_RS12685 PF00483 Nucleotidyl transferase CHH28_RS12690 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CHH28_RS12690 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CHH28_RS12695 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CHH28_RS12700 PF00920 Dehydratase family CHH28_RS12705 PF01081 KDPG and KHG aldolase CHH28_RS12710 PF00128 Alpha amylase, catalytic domain CHH28_RS12735 PF00800 Prephenate dehydratase CHH28_RS12735 PF01817 Chorismate mutase type II CHH28_RS12740 PF12833 Helix-turn-helix domain CHH28_RS12740 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CHH28_RS12745 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS12755 PF00072 Response regulator receiver domain CHH28_RS12775 PF13667 ThiC-associated domain CHH28_RS12775 PF01964 Radical SAM ThiC family CHH28_RS12780 PF01266 FAD dependent oxidoreductase CHH28_RS12790 PF05690 Thiazole biosynthesis protein ThiG CHH28_RS12795 PF02581 Thiamine monophosphate synthase CHH28_RS12800 PF00183 Hsp90 protein CHH28_RS12820 PF01235 Sodium:alanine symporter family CHH28_RS12825 PF00664 ABC transporter transmembrane region CHH28_RS12825 PF00005 ABC transporter CHH28_RS12830 PF00664 ABC transporter transmembrane region CHH28_RS12830 PF00005 ABC transporter CHH28_RS12855 PF02801 Beta-ketoacyl synthase, C-terminal domain CHH28_RS12855 PF00109 Beta-ketoacyl synthase, N-terminal domain CHH28_RS12860 PF02311 AraC-like ligand binding domain CHH28_RS12860 PF12833 Helix-turn-helix domain CHH28_RS12865 PF01810 LysE type translocator CHH28_RS12880 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS12880 PF00072 Response regulator receiver domain CHH28_RS12885 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS12885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS12885 PF00672 HAMP domain CHH28_RS12905 PF00873 AcrB/AcrD/AcrF family CHH28_RS12925 PF06719 AraC-type transcriptional regulator N-terminus CHH28_RS12925 PF12833 Helix-turn-helix domain CHH28_RS12930 PF00465 Iron-containing alcohol dehydrogenase CHH28_RS12945 PF02811 PHP domain CHH28_RS12945 PF07733 Bacterial DNA polymerase III alpha NTPase domain CHH28_RS12945 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CHH28_RS12945 PF01336 OB-fold nucleic acid binding domain CHH28_RS12945 PF14579 Helix-hairpin-helix motif CHH28_RS12955 PF03846 Cell division inhibitor SulA CHH28_RS12990 PF01752 Collagenase CHH28_RS12990 PF08453 Peptidase family M9 N-terminal CHH28_RS13020 PF00171 Aldehyde dehydrogenase family CHH28_RS13025 PF01321 Creatinase/Prolidase N-terminal domain CHH28_RS13025 PF00557 Metallopeptidase family M24 CHH28_RS13030 PF00202 Aminotransferase class-III CHH28_RS13040 PF07687 Peptidase dimerisation domain CHH28_RS13040 PF01546 Peptidase family M20/M25/M40 CHH28_RS13045 PF18693 TRAM domain CHH28_RS13045 PF04055 Radical SAM superfamily CHH28_RS13045 PF00919 Uncharacterized protein family UPF0004 CHH28_RS13050 PF00672 HAMP domain CHH28_RS13050 PF01627 Hpt domain CHH28_RS13050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS13050 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS13050 PF00072 Response regulator receiver domain CHH28_RS13050 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHH28_RS13060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS13060 PF00672 HAMP domain CHH28_RS13060 PF01627 Hpt domain CHH28_RS13060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHH28_RS13060 PF00072 Response regulator receiver domain CHH28_RS13060 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS13065 PF13439 Glycosyltransferase Family 4 CHH28_RS13065 PF00534 Glycosyl transferases group 1 CHH28_RS13070 PF00072 Response regulator receiver domain CHH28_RS13075 PF00072 Response regulator receiver domain CHH28_RS13080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHH28_RS13080 PF00672 HAMP domain CHH28_RS13080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS13080 PF00072 Response regulator receiver domain CHH28_RS13080 PF01627 Hpt domain CHH28_RS13080 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS13090 PF00873 AcrB/AcrD/AcrF family CHH28_RS13120 PF16123 Hydroxyacylglutathione hydrolase C-terminus CHH28_RS13120 PF00753 Metallo-beta-lactamase superfamily CHH28_RS13130 PF03167 Uracil DNA glycosylase superfamily CHH28_RS13135 PF00216 Bacterial DNA-binding protein CHH28_RS13140 PF01336 OB-fold nucleic acid binding domain CHH28_RS13140 PF00152 tRNA synthetases class II (D, K and N) CHH28_RS13140 PF02938 GAD domain CHH28_RS13145 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CHH28_RS13145 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CHH28_RS13150 PF00115 Cytochrome C and Quinol oxidase polypeptide I CHH28_RS13155 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CHH28_RS13160 PF00510 Cytochrome c oxidase subunit III CHH28_RS13185 PF01040 UbiA prenyltransferase family CHH28_RS13190 PF01553 Acyltransferase CHH28_RS13205 PF11791 Aconitate B N-terminal domain CHH28_RS13205 PF06434 Aconitate hydratase 2 N-terminus CHH28_RS13205 PF00330 Aconitase family (aconitate hydratase) CHH28_RS13210 PF11890 Domain of unknown function (DUF3410) CHH28_RS13210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHH28_RS13210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHH28_RS13220 PF00155 Aminotransferase class I and II CHH28_RS13225 PF01641 SelR domain CHH28_RS13230 PF00255 Glutathione peroxidase CHH28_RS13235 PF01047 MarR family CHH28_RS13240 PF00072 Response regulator receiver domain CHH28_RS13240 PF00672 HAMP domain CHH28_RS13240 PF01627 Hpt domain CHH28_RS13240 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHH28_RS13240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS13240 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS13285 PF00005 ABC transporter CHH28_RS13290 PF01061 ABC-2 type transporter CHH28_RS13295 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CHH28_RS13295 PF14489 QueF-like protein CHH28_RS13300 PF00211 Adenylate and Guanylate cyclase catalytic domain CHH28_RS13300 PF00072 Response regulator receiver domain CHH28_RS13305 PF00881 Nitroreductase family CHH28_RS13350 PF01420 Type I restriction modification DNA specificity domain CHH28_RS13355 PF12161 HsdM N-terminal domain CHH28_RS13355 PF02384 N-6 DNA Methylase CHH28_RS13390 PF01595 Cyclin M transmembrane N-terminal domain CHH28_RS13390 PF00571 CBS domain CHH28_RS13400 PF00092 von Willebrand factor type A domain CHH28_RS13400 PF07584 Aerotolerance regulator N-terminal CHH28_RS13415 PF01882 Protein of unknown function DUF58 CHH28_RS13420 PF17863 AAA lid domain CHH28_RS13420 PF07726 ATPase family associated with various cellular activities (AAA) CHH28_RS13425 PF05088 Bacterial NAD-glutamate dehydrogenase CHH28_RS13450 PF00989 PAS fold CHH28_RS13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS13450 PF00672 HAMP domain CHH28_RS13450 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS13465 PF01180 Dihydroorotate dehydrogenase CHH28_RS13470 PF04957 Ribosome modulation factor CHH28_RS13475 PF02926 THUMP domain CHH28_RS13475 PF10672 S-adenosylmethionine-dependent methyltransferase CHH28_RS13475 PF01170 Putative RNA methylase family UPF0020 CHH28_RS13480 PF00909 Ammonium Transporter Family CHH28_RS13490 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS13490 PF00563 EAL domain CHH28_RS13490 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS13525 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CHH28_RS13525 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CHH28_RS13525 PF01189 16S rRNA methyltransferase RsmB/F CHH28_RS13530 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS13530 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS13530 PF00563 EAL domain CHH28_RS13535 PF00487 Fatty acid desaturase CHH28_RS13545 PF02463 RecF/RecN/SMC N terminal domain CHH28_RS13545 PF06470 SMC proteins Flexible Hinge Domain CHH28_RS13550 PF04354 ZipA, C-terminal FtsZ-binding domain CHH28_RS13555 PF03120 NAD-dependent DNA ligase OB-fold domain CHH28_RS13555 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CHH28_RS13555 PF12826 Helix-hairpin-helix motif CHH28_RS13555 PF00533 BRCA1 C Terminus (BRCT) domain CHH28_RS13555 PF01653 NAD-dependent DNA ligase adenylation domain CHH28_RS13565 PF08448 PAS fold CHH28_RS13565 PF05231 MASE1 CHH28_RS13565 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS13565 PF13426 PAS domain CHH28_RS13565 PF00563 EAL domain CHH28_RS13565 PF08447 PAS fold CHH28_RS13575 PF05958 tRNA (Uracil-5-)-methyltransferase CHH28_RS13580 PF01037 Lrp/AsnC ligand binding domain CHH28_RS13590 PF00155 Aminotransferase class I and II CHH28_RS13610 PF02397 Bacterial sugar transferase CHH28_RS13620 PF00534 Glycosyl transferases group 1 CHH28_RS13620 PF13579 Glycosyl transferase 4-like domain CHH28_RS13640 PF12464 Maltose acetyltransferase CHH28_RS13640 PF00132 Bacterial transferase hexapeptide (six repeats) CHH28_RS13645 PF01380 SIS domain CHH28_RS13675 PF13439 Glycosyltransferase Family 4 CHH28_RS13675 PF00534 Glycosyl transferases group 1 CHH28_RS13680 PF00534 Glycosyl transferases group 1 CHH28_RS13680 PF13439 Glycosyltransferase Family 4 CHH28_RS13685 PF01370 NAD dependent epimerase/dehydratase family CHH28_RS13690 PF00072 Response regulator receiver domain CHH28_RS13690 PF00158 Sigma-54 interaction domain CHH28_RS13690 PF02954 Bacterial regulatory protein, Fis family CHH28_RS13695 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHH28_RS13695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS13695 PF00672 HAMP domain CHH28_RS13695 PF00072 Response regulator receiver domain CHH28_RS13695 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS13695 PF01627 Hpt domain CHH28_RS13700 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS13700 PF00072 Response regulator receiver domain CHH28_RS13705 PF00072 Response regulator receiver domain CHH28_RS13705 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS13725 PF01740 STAS domain CHH28_RS13730 PF07726 ATPase family associated with various cellular activities (AAA) CHH28_RS13730 PF17863 AAA lid domain CHH28_RS13740 PF11992 Domain of unknown function (DUF3488) CHH28_RS13740 PF01841 Transglutaminase-like superfamily CHH28_RS13740 PF13559 Domain of unknown function (DUF4129) CHH28_RS13750 PF00085 Thioredoxin CHH28_RS13755 PF00248 Aldo/keto reductase family CHH28_RS13760 PF01554 MatE CHH28_RS13765 PF04315 Elongation factor P hydroxylase CHH28_RS13770 PF00271 Helicase conserved C-terminal domain CHH28_RS13770 PF00270 DEAD/DEAH box helicase CHH28_RS13795 PF00664 ABC transporter transmembrane region CHH28_RS13795 PF00005 ABC transporter CHH28_RS13800 PF01367 5'-3' exonuclease, C-terminal SAM fold CHH28_RS13800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CHH28_RS13805 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CHH28_RS13830 PF01219 Prokaryotic diacylglycerol kinase CHH28_RS13840 PF00072 Response regulator receiver domain CHH28_RS13840 PF09308 LuxQ, periplasmic CHH28_RS13840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS13840 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS13845 PF13654 AAA domain CHH28_RS13845 PF05362 Lon protease (S16) C-terminal proteolytic domain CHH28_RS13850 PF01402 Ribbon-helix-helix protein, copG family CHH28_RS13865 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CHH28_RS13865 PF12169 DNA polymerase III subunits gamma and tau domain III CHH28_RS13865 PF12170 DNA polymerase III tau subunit V interacting with alpha CHH28_RS13870 PF02575 YbaB/EbfC DNA-binding family CHH28_RS13875 PF13662 Toprim domain CHH28_RS13875 PF02132 RecR protein CHH28_RS13880 PF00570 HRDC domain CHH28_RS13880 PF01612 3'-5' exonuclease CHH28_RS13885 PF05166 YcgL domain CHH28_RS13890 PF03692 Putative zinc- or iron-chelating domain CHH28_RS13910 PF00004 ATPase family associated with various cellular activities (AAA) CHH28_RS13910 PF01434 Peptidase family M41 CHH28_RS13910 PF17862 AAA+ lid domain CHH28_RS13920 PF01575 MaoC like domain CHH28_RS13930 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS13930 PF00501 AMP-binding enzyme CHH28_RS13935 PF04408 Helicase associated domain (HA2) CHH28_RS13935 PF00270 DEAD/DEAH box helicase CHH28_RS13935 PF11898 Domain of unknown function (DUF3418) CHH28_RS13935 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CHH28_RS13935 PF00271 Helicase conserved C-terminal domain CHH28_RS13945 PF05114 Protein of unknown function (DUF692) CHH28_RS13955 PF04333 MlaA lipoprotein CHH28_RS13970 PF01464 Transglycosylase SLT domain CHH28_RS13970 PF01476 LysM domain CHH28_RS13980 PF00075 RNase H CHH28_RS13985 PF00929 Exonuclease CHH28_RS14000 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CHH28_RS14000 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CHH28_RS14020 PF05698 Bacterial trigger factor protein (TF) C-terminus CHH28_RS14020 PF05697 Bacterial trigger factor protein (TF) CHH28_RS14020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHH28_RS14025 PF00574 Clp protease CHH28_RS14030 PF10431 C-terminal, D2-small domain, of ClpB protein CHH28_RS14030 PF06689 ClpX C4-type zinc finger CHH28_RS14030 PF07724 AAA domain (Cdc48 subfamily) CHH28_RS14035 PF05362 Lon protease (S16) C-terminal proteolytic domain CHH28_RS14035 PF02190 ATP-dependent protease La (LON) substrate-binding domain CHH28_RS14035 PF00004 ATPase family associated with various cellular activities (AAA) CHH28_RS14040 PF00216 Bacterial DNA-binding protein CHH28_RS14050 PF09312 SurA N-terminal domain CHH28_RS14050 PF00639 PPIC-type PPIASE domain CHH28_RS14060 PF08496 Peptidase family S49 N-terminal CHH28_RS14060 PF01343 Peptidase family S49 CHH28_RS14065 PF08240 Alcohol dehydrogenase GroES-like domain CHH28_RS14065 PF00107 Zinc-binding dehydrogenase CHH28_RS14070 PF02254 TrkA-N domain CHH28_RS14070 PF00999 Sodium/hydrogen exchanger family CHH28_RS14090 PF03009 Glycerophosphoryl diester phosphodiesterase family CHH28_RS14095 PF01554 MatE CHH28_RS14100 PF02310 B12 binding domain CHH28_RS14100 PF02965 Vitamin B12 dependent methionine synthase, activation domain CHH28_RS14100 PF02607 B12 binding domain CHH28_RS14100 PF02574 Homocysteine S-methyltransferase CHH28_RS14100 PF00809 Pterin binding enzyme CHH28_RS14105 PF01521 Iron-sulphur cluster biosynthesis CHH28_RS14105 PF01106 NifU-like domain CHH28_RS14115 PF00158 Sigma-54 interaction domain CHH28_RS14115 PF00072 Response regulator receiver domain CHH28_RS14115 PF02954 Bacterial regulatory protein, Fis family CHH28_RS14125 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CHH28_RS14125 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CHH28_RS14135 PF00300 Histidine phosphatase superfamily (branch 1) CHH28_RS14145 PF12697 Alpha/beta hydrolase family CHH28_RS14155 PF00849 RNA pseudouridylate synthase CHH28_RS14165 PF16325 Peptidase family U32 C-terminal domain CHH28_RS14165 PF01136 Peptidase family U32 CHH28_RS14185 PF09186 Domain of unknown function (DUF1949) CHH28_RS14185 PF01205 Uncharacterized protein family UPF0029 CHH28_RS14190 PF05175 Methyltransferase small domain CHH28_RS14190 PF08468 Methyltransferase small domain N-terminal CHH28_RS14205 PF01022 Bacterial regulatory protein, arsR family CHH28_RS14210 PF02424 ApbE family CHH28_RS14220 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS14220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHH28_RS14235 PF00923 Transaldolase/Fructose-6-phosphate aldolase CHH28_RS14245 PF01207 Dihydrouridine synthase (Dus) CHH28_RS14250 PF04356 Protein of unknown function (DUF489) CHH28_RS14260 PF00293 NUDIX domain CHH28_RS14265 PF00849 RNA pseudouridylate synthase CHH28_RS14270 PF03971 Monomeric isocitrate dehydrogenase CHH28_RS14275 PF00313 'Cold-shock' DNA-binding domain CHH28_RS14280 PF02617 ATP-dependent Clp protease adaptor protein ClpS CHH28_RS14285 PF02861 Clp amino terminal domain, pathogenicity island component CHH28_RS14285 PF17871 AAA lid domain CHH28_RS14285 PF10431 C-terminal, D2-small domain, of ClpB protein CHH28_RS14285 PF07724 AAA domain (Cdc48 subfamily) CHH28_RS14285 PF00004 ATPase family associated with various cellular activities (AAA) CHH28_RS14290 PF01176 Translation initiation factor 1A / IF-1 CHH28_RS14295 PF04377 Arginine-tRNA-protein transferase, C terminus CHH28_RS14295 PF04376 Arginine-tRNA-protein transferase, N terminus CHH28_RS14300 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CHH28_RS14305 PF09397 Ftsk gamma domain CHH28_RS14305 PF17854 FtsK alpha domain CHH28_RS14305 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CHH28_RS14305 PF01580 FtsK/SpoIIIE family CHH28_RS14310 PF03548 Outer membrane lipoprotein carrier protein LolA CHH28_RS14315 PF12002 MgsA AAA+ ATPase C terminal CHH28_RS14315 PF00004 ATPase family associated with various cellular activities (AAA) CHH28_RS14315 PF16193 AAA C-terminal domain CHH28_RS14320 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CHH28_RS14325 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHH28_RS14325 PF02403 Seryl-tRNA synthetase N-terminal domain CHH28_RS14330 PF14824 Sirohaem biosynthesis protein central CHH28_RS14330 PF10414 Sirohaem synthase dimerisation region CHH28_RS14330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CHH28_RS14335 PF00672 HAMP domain CHH28_RS14335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS14340 PF04358 DsrC like protein CHH28_RS14355 PF02635 DsrE/DsrF-like family CHH28_RS14365 PF00850 Histone deacetylase domain CHH28_RS14370 PF00583 Acetyltransferase (GNAT) family CHH28_RS14370 PF13607 Succinyl-CoA ligase like flavodoxin domain CHH28_RS14370 PF13380 CoA binding domain CHH28_RS14375 PF00196 Bacterial regulatory proteins, luxR family CHH28_RS14375 PF00072 Response regulator receiver domain CHH28_RS14380 PF01541 GIY-YIG catalytic domain CHH28_RS14380 PF02151 UvrB/uvrC motif CHH28_RS14380 PF08459 UvrC Helix-hairpin-helix N-terminal CHH28_RS14385 PF01066 CDP-alcohol phosphatidyltransferase CHH28_RS14405 PF00563 EAL domain CHH28_RS14405 PF08448 PAS fold CHH28_RS14405 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS14410 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS14410 PF00563 EAL domain CHH28_RS14410 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS14415 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS14415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS14415 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH28_RS14435 PF02608 ABC transporter substrate-binding protein PnrA-like CHH28_RS14440 PF04960 Glutaminase CHH28_RS14465 PF01012 Electron transfer flavoprotein domain CHH28_RS14470 PF00766 Electron transfer flavoprotein FAD-binding domain CHH28_RS14470 PF01012 Electron transfer flavoprotein domain CHH28_RS14475 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CHH28_RS14475 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CHH28_RS14475 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CHH28_RS14480 PF00437 Type II/IV secretion system protein CHH28_RS14485 PF00482 Type II secretion system (T2SS), protein F CHH28_RS14490 PF08334 Type II secretion system (T2SS), protein G CHH28_RS14490 PF07963 Prokaryotic N-terminal methylation motif CHH28_RS14495 PF12019 Type II transport protein GspH CHH28_RS14495 PF07963 Prokaryotic N-terminal methylation motif CHH28_RS14500 PF02501 Type II secretion system (T2SS), protein I CHH28_RS14500 PF07963 Prokaryotic N-terminal methylation motif CHH28_RS14505 PF07963 Prokaryotic N-terminal methylation motif CHH28_RS14505 PF11612 Type II secretion system (T2SS), protein J CHH28_RS14510 PF03934 Type II secretion system (T2SS), protein K CHH28_RS14525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHH28_RS14525 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS14535 PF00589 Phage integrase family CHH28_RS14540 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS14540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CHH28_RS14550 PF00176 SNF2 family N-terminal domain CHH28_RS14550 PF18339 RapA N-terminal Tudor like domain 1 CHH28_RS14550 PF12137 RNA polymerase recycling family C-terminal CHH28_RS14550 PF00271 Helicase conserved C-terminal domain CHH28_RS14550 PF18337 RapA N-terminal Tudor like domain CHH28_RS14555 PF00271 Helicase conserved C-terminal domain CHH28_RS14555 PF12137 RNA polymerase recycling family C-terminal CHH28_RS14555 PF18337 RapA N-terminal Tudor like domain CHH28_RS14555 PF00176 SNF2 family N-terminal domain CHH28_RS14555 PF18339 RapA N-terminal Tudor like domain 1 CHH28_RS14560 PF02954 Bacterial regulatory protein, Fis family CHH28_RS14560 PF00158 Sigma-54 interaction domain CHH28_RS14560 PF00072 Response regulator receiver domain CHH28_RS14570 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CHH28_RS14690 PF17990 L-Lysine epsilon oxidase N-terminal CHH28_RS14690 PF18417 L-lysine epsilon oxidase C-terminal domain CHH28_RS14705 PF05656 Protein of unknown function (DUF805) CHH28_RS14720 PF00873 AcrB/AcrD/AcrF family CHH28_RS14735 PF00005 ABC transporter CHH28_RS14740 PF07702 UTRA domain CHH28_RS14740 PF00392 Bacterial regulatory proteins, gntR family CHH28_RS14750 PF02899 Phage integrase, N-terminal SAM-like domain CHH28_RS14750 PF00589 Phage integrase family CHH28_RS14755 PF00106 short chain dehydrogenase CHH28_RS14760 PF02926 THUMP domain CHH28_RS14760 PF02568 Thiamine biosynthesis protein (ThiI) CHH28_RS14770 PF03372 Endonuclease/Exonuclease/phosphatase family CHH28_RS14795 PF02371 Transposase IS116/IS110/IS902 family CHH28_RS14795 PF01548 Transposase CHH28_RS14805 PF03544 Gram-negative bacterial TonB protein C-terminal CHH28_RS14810 PF02472 Biopolymer transport protein ExbD/TolR CHH28_RS14815 PF01618 MotA/TolQ/ExbB proton channel family CHH28_RS14820 PF01618 MotA/TolQ/ExbB proton channel family CHH28_RS14830 PF00675 Insulinase (Peptidase family M16) CHH28_RS14830 PF08367 Peptidase M16C associated CHH28_RS14830 PF05193 Peptidase M16 inactive domain CHH28_RS14835 PF00266 Aminotransferase class-V CHH28_RS14850 PF09115 DNA polymerase III, delta subunit, C terminal CHH28_RS14855 PF02223 Thymidylate kinase CHH28_RS14860 PF02618 YceG-like family CHH28_RS14865 PF01063 Amino-transferase class IV CHH28_RS14870 PF02801 Beta-ketoacyl synthase, C-terminal domain CHH28_RS14870 PF00109 Beta-ketoacyl synthase, N-terminal domain CHH28_RS14875 PF00550 Phosphopantetheine attachment site CHH28_RS14885 PF00698 Acyl transferase domain CHH28_RS14890 PF02504 Fatty acid synthesis protein CHH28_RS14895 PF01783 Ribosomal L32p protein family CHH28_RS14905 PF06965 Na+/H+ antiporter 1 CHH28_RS14905 PF01343 Peptidase family S49 CHH28_RS14910 PF13419 Haloacid dehalogenase-like hydrolase CHH28_RS14915 PF00849 RNA pseudouridylate synthase CHH28_RS14915 PF01479 S4 domain CHH28_RS14920 PF00575 S1 RNA binding domain CHH28_RS14920 PF10150 Ribonuclease E/G family CHH28_RS14920 PF12111 Polyribonucleotide phosphorylase C terminal CHH28_RS14925 PF04303 PrpF protein CHH28_RS14930 PF00694 Aconitase C-terminal domain CHH28_RS14930 PF00330 Aconitase family (aconitate hydratase) CHH28_RS14935 PF00285 Citrate synthase, C-terminal domain CHH28_RS14945 PF07729 FCD domain CHH28_RS14945 PF00392 Bacterial regulatory proteins, gntR family CHH28_RS14950 PF03737 Aldolase/RraA CHH28_RS14965 PF00391 PEP-utilising enzyme, mobile domain CHH28_RS14965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CHH28_RS14965 PF02896 PEP-utilising enzyme, TIM barrel domain CHH28_RS14970 PF03618 Kinase/pyrophosphorylase CHH28_RS15005 PF04715 Anthranilate synthase component I, N terminal region CHH28_RS15005 PF00425 chorismate binding enzyme CHH28_RS15015 PF01507 Phosphoadenosine phosphosulfate reductase family CHH28_RS15020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS15020 PF03466 LysR substrate binding domain CHH28_RS15025 PF01925 Sulfite exporter TauE/SafE CHH28_RS15035 PF00793 DAHP synthetase I family CHH28_RS15045 PF01053 Cys/Met metabolism PLP-dependent enzyme CHH28_RS15050 PF00156 Phosphoribosyl transferase domain CHH28_RS15055 PF02674 Colicin V production protein CHH28_RS15065 PF02875 Mur ligase family, glutamate ligase domain CHH28_RS15065 PF08245 Mur ligase middle domain CHH28_RS15070 PF00290 Tryptophan synthase alpha chain CHH28_RS15075 PF00291 Pyridoxal-phosphate dependent enzyme CHH28_RS15080 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CHH28_RS15085 PF01416 tRNA pseudouridine synthase CHH28_RS15095 PF01118 Semialdehyde dehydrogenase, NAD binding domain CHH28_RS15095 PF02774 Semialdehyde dehydrogenase, dimerisation domain CHH28_RS15100 PF00180 Isocitrate/isopropylmalate dehydrogenase CHH28_RS15105 PF00694 Aconitase C-terminal domain CHH28_RS15110 PF00330 Aconitase family (aconitate hydratase) CHH28_RS15115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS15120 PF00582 Universal stress protein family CHH28_RS15130 PF00501 AMP-binding enzyme CHH28_RS15130 PF13193 AMP-binding enzyme C-terminal domain CHH28_RS15130 PF16177 Acetyl-coenzyme A synthetase N-terminus CHH28_RS15135 PF03881 Fructosamine kinase CHH28_RS15140 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CHH28_RS15140 PF01243 Pyridoxamine 5'-phosphate oxidase CHH28_RS15155 PF03739 Lipopolysaccharide export system permease LptF/LptG CHH28_RS15160 PF03739 Lipopolysaccharide export system permease LptF/LptG CHH28_RS15165 PF00883 Cytosol aminopeptidase family, catalytic domain CHH28_RS15165 PF02789 Cytosol aminopeptidase family, N-terminal domain CHH28_RS15170 PF00881 Nitroreductase family CHH28_RS15175 PF00364 Biotin-requiring enzyme CHH28_RS15175 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CHH28_RS15175 PF02817 e3 binding domain CHH28_RS15180 PF17831 Pyruvate dehydrogenase E1 component middle domain CHH28_RS15180 PF00456 Transketolase, thiamine diphosphate binding domain CHH28_RS15185 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CHH28_RS15185 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CHH28_RS15190 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS15190 PF00563 EAL domain CHH28_RS15190 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS15195 PF08497 Radical SAM N-terminal CHH28_RS15195 PF04055 Radical SAM superfamily CHH28_RS15195 PF11842 Domain of unknown function (DUF3362) CHH28_RS15215 PF00072 Response regulator receiver domain CHH28_RS15215 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS15225 PF04073 Aminoacyl-tRNA editing domain CHH28_RS15225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHH28_RS15225 PF03129 Anticodon binding domain CHH28_RS15235 PF03480 Bacterial extracellular solute-binding protein, family 7 CHH28_RS15245 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CHH28_RS15250 PF17200 Single Cache domain 2 CHH28_RS15250 PF07730 Histidine kinase CHH28_RS15255 PF00196 Bacterial regulatory proteins, luxR family CHH28_RS15255 PF00072 Response regulator receiver domain CHH28_RS15265 PF00171 Aldehyde dehydrogenase family CHH28_RS15275 PF05362 Lon protease (S16) C-terminal proteolytic domain CHH28_RS15275 PF02190 ATP-dependent protease La (LON) substrate-binding domain CHH28_RS15275 PF00004 ATPase family associated with various cellular activities (AAA) CHH28_RS15290 PF02913 FAD linked oxidases, C-terminal domain CHH28_RS15290 PF01565 FAD binding domain CHH28_RS15295 PF02589 LUD domain CHH28_RS15300 PF11870 Domain of unknown function (DUF3390) CHH28_RS15300 PF02589 LUD domain CHH28_RS15300 PF13183 4Fe-4S dicluster domain CHH28_RS15305 PF02754 Cysteine-rich domain CHH28_RS15310 PF00392 Bacterial regulatory proteins, gntR family CHH28_RS15310 PF07729 FCD domain CHH28_RS15350 PF01464 Transglycosylase SLT domain CHH28_RS15350 PF10145 Phage-related minor tail protein CHH28_RS15350 PF01551 Peptidase family M23 CHH28_RS15355 PF05971 RNA methyltransferase CHH28_RS15360 PF00117 Glutamine amidotransferase class-I CHH28_RS15360 PF00958 GMP synthase C terminal domain CHH28_RS15360 PF02540 NAD synthase CHH28_RS15365 PF00478 IMP dehydrogenase / GMP reductase domain CHH28_RS15365 PF00571 CBS domain CHH28_RS15385 PF13742 OB-fold nucleic acid binding domain CHH28_RS15385 PF02601 Exonuclease VII, large subunit CHH28_RS15400 PF01966 HD domain CHH28_RS15400 PF11871 Domain of unknown function (DUF3391) CHH28_RS15405 PF09190 DALR domain CHH28_RS15405 PF01406 tRNA synthetases class I (C) catalytic domain CHH28_RS15410 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CHH28_RS15410 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHH28_RS15415 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CHH28_RS15420 PF00149 Calcineurin-like phosphoesterase CHH28_RS15425 PF01565 FAD binding domain CHH28_RS15425 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CHH28_RS15430 PF01451 Low molecular weight phosphotyrosine protein phosphatase CHH28_RS15435 PF03966 Trm112p-like protein CHH28_RS15440 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CHH28_RS15445 PF00664 ABC transporter transmembrane region CHH28_RS15445 PF00005 ABC transporter CHH28_RS15450 PF02472 Biopolymer transport protein ExbD/TolR CHH28_RS15455 PF01618 MotA/TolQ/ExbB proton channel family CHH28_RS15460 PF00753 Metallo-beta-lactamase superfamily CHH28_RS15460 PF13567 Domain of unknown function (DUF4131) CHH28_RS15460 PF03772 Competence protein CHH28_RS15470 PF00005 ABC transporter CHH28_RS15475 PF02687 FtsX-like permease family CHH28_RS15475 PF12704 MacB-like periplasmic core domain CHH28_RS15480 PF04371 Porphyromonas-type peptidyl-arginine deiminase CHH28_RS15485 PF00795 Carbon-nitrogen hydrolase CHH28_RS15495 PF12146 Serine aminopeptidase, S33 CHH28_RS15500 PF06733 DEAD_2 CHH28_RS15500 PF13307 Helicase C-terminal domain CHH28_RS15510 PF13401 AAA domain CHH28_RS15510 PF01471 Putative peptidoglycan binding domain CHH28_RS15525 PF01274 Malate synthase CHH28_RS15555 PF00206 Lyase CHH28_RS15555 PF08328 Adenylosuccinate lyase C-terminal CHH28_RS15560 PF08007 Cupin superfamily protein CHH28_RS15565 PF13673 Acetyltransferase (GNAT) domain CHH28_RS15575 PF02348 Cytidylyltransferase CHH28_RS15580 PF01370 NAD dependent epimerase/dehydratase family CHH28_RS15600 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHH28_RS15605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS15605 PF00672 HAMP domain CHH28_RS15605 PF17200 Single Cache domain 2 CHH28_RS15610 PF02629 CoA binding domain CHH28_RS15610 PF00549 CoA-ligase CHH28_RS15615 PF08442 ATP-grasp domain CHH28_RS15615 PF00549 CoA-ligase CHH28_RS15620 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS15620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHH28_RS15625 PF02817 e3 binding domain CHH28_RS15625 PF00364 Biotin-requiring enzyme CHH28_RS15625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CHH28_RS15630 PF02779 Transketolase, pyrimidine binding domain CHH28_RS15630 PF16078 2-oxoglutarate dehydrogenase N-terminus CHH28_RS15630 PF16870 2-oxoglutarate dehydrogenase C-terminal CHH28_RS15630 PF00676 Dehydrogenase E1 component CHH28_RS15635 PF13085 2Fe-2S iron-sulfur cluster binding domain CHH28_RS15640 PF02910 Fumarate reductase flavoprotein C-term CHH28_RS15640 PF00890 FAD binding domain CHH28_RS15645 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CHH28_RS15650 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CHH28_RS15655 PF00285 Citrate synthase, C-terminal domain CHH28_RS15660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CHH28_RS15660 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CHH28_RS15675 PF01584 CheW-like domain CHH28_RS15675 PF00072 Response regulator receiver domain CHH28_RS15680 PF08668 HDOD domain CHH28_RS15680 PF00563 EAL domain CHH28_RS15685 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHH28_RS15685 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CHH28_RS15690 PF01266 FAD dependent oxidoreductase CHH28_RS15690 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CHH28_RS15700 PF12833 Helix-turn-helix domain CHH28_RS15700 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CHH28_RS15705 PF08448 PAS fold CHH28_RS15705 PF01739 CheR methyltransferase, SAM binding domain CHH28_RS15705 PF01339 CheB methylesterase CHH28_RS15705 PF03705 CheR methyltransferase, all-alpha domain CHH28_RS15710 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS15710 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS15710 PF00563 EAL domain CHH28_RS15715 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CHH28_RS15725 PF00535 Glycosyl transferase family 2 CHH28_RS15730 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CHH28_RS15745 PF02801 Beta-ketoacyl synthase, C-terminal domain CHH28_RS15745 PF00109 Beta-ketoacyl synthase, N-terminal domain CHH28_RS15750 PF00289 Biotin carboxylase, N-terminal domain CHH28_RS15750 PF02785 Biotin carboxylase C-terminal domain CHH28_RS15750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHH28_RS15755 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH28_RS15760 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS15765 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS15770 PF00005 ABC transporter CHH28_RS15780 PF00672 HAMP domain CHH28_RS15780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS15780 PF02743 Cache domain CHH28_RS15785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS15785 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS15785 PF00072 Response regulator receiver domain CHH28_RS15785 PF09308 LuxQ, periplasmic CHH28_RS15790 PF00873 AcrB/AcrD/AcrF family CHH28_RS15795 PF13533 Biotin-lipoyl like CHH28_RS15800 PF00376 MerR family regulatory protein CHH28_RS15800 PF09278 MerR, DNA binding CHH28_RS15805 PF07690 Major Facilitator Superfamily CHH28_RS15825 PF05525 Branched-chain amino acid transport protein CHH28_RS15860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS15860 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS15860 PF00672 HAMP domain CHH28_RS15865 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS15870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CHH28_RS15870 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS15875 PF10609 NUBPL iron-transfer P-loop NTPase CHH28_RS15885 PF12697 Alpha/beta hydrolase family CHH28_RS15890 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH28_RS15910 PF00376 MerR family regulatory protein CHH28_RS15910 PF09278 MerR, DNA binding CHH28_RS15915 PF01590 GAF domain CHH28_RS15915 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS15915 PF00360 Phytochrome region CHH28_RS15915 PF00563 EAL domain CHH28_RS15920 PF02222 ATP-grasp domain CHH28_RS15930 PF00132 Bacterial transferase hexapeptide (six repeats) CHH28_RS15935 PF00293 NUDIX domain CHH28_RS15945 PF00293 NUDIX domain CHH28_RS15945 PF09297 NADH pyrophosphatase zinc ribbon domain CHH28_RS15950 PF01784 NIF3 (NGG1p interacting factor 3) CHH28_RS15955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS15955 PF00672 HAMP domain CHH28_RS15955 PF02743 Cache domain CHH28_RS15975 PF00849 RNA pseudouridylate synthase CHH28_RS15980 PF00462 Glutaredoxin CHH28_RS15985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHH28_RS15990 PF00873 AcrB/AcrD/AcrF family CHH28_RS15995 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS15995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS15995 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH28_RS16000 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CHH28_RS16005 PF00793 DAHP synthetase I family CHH28_RS16015 PF00005 ABC transporter CHH28_RS16015 PF00571 CBS domain CHH28_RS16020 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS16025 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CHH28_RS16025 PF12833 Helix-turn-helix domain CHH28_RS16025 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CHH28_RS16025 PF02805 Metal binding domain of Ada CHH28_RS16030 PF08003 Protein of unknown function (DUF1698) CHH28_RS16035 PF13649 Methyltransferase domain CHH28_RS16040 PF02646 RmuC family CHH28_RS16060 PF13419 Haloacid dehalogenase-like hydrolase CHH28_RS16065 PF00834 Ribulose-phosphate 3 epimerase family CHH28_RS16085 PF07670 Nucleoside recognition CHH28_RS16090 PF00108 Thiolase, N-terminal domain CHH28_RS16090 PF02803 Thiolase, C-terminal domain CHH28_RS16095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CHH28_RS16095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CHH28_RS16095 PF00378 Enoyl-CoA hydratase/isomerase CHH28_RS16110 PF03222 Tryptophan/tyrosine permease family CHH28_RS16125 PF02525 Flavodoxin-like fold CHH28_RS16130 PF00999 Sodium/hydrogen exchanger family CHH28_RS16130 PF02254 TrkA-N domain CHH28_RS16135 PF02525 Flavodoxin-like fold CHH28_RS16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS16140 PF03466 LysR substrate binding domain CHH28_RS16145 PF00873 AcrB/AcrD/AcrF family CHH28_RS16150 PF13533 Biotin-lipoyl like CHH28_RS16165 PF00156 Phosphoribosyl transferase domain CHH28_RS16170 PF07687 Peptidase dimerisation domain CHH28_RS16170 PF01546 Peptidase family M20/M25/M40 CHH28_RS16175 PF13847 Methyltransferase domain CHH28_RS16195 PF10458 Valyl tRNA synthetase tRNA binding arm CHH28_RS16195 PF00133 tRNA synthetases class I (I, L, M and V) CHH28_RS16195 PF08264 Anticodon-binding domain of tRNA CHH28_RS16205 PF08264 Anticodon-binding domain of tRNA CHH28_RS16205 PF00133 tRNA synthetases class I (I, L, M and V) CHH28_RS16205 PF10458 Valyl tRNA synthetase tRNA binding arm CHH28_RS16215 PF01027 Inhibitor of apoptosis-promoting Bax1 CHH28_RS16220 PF03466 LysR substrate binding domain CHH28_RS16220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS16230 PF00501 AMP-binding enzyme CHH28_RS16260 PF00581 Rhodanese-like domain CHH28_RS16260 PF17773 UPF0176 acylphosphatase like domain CHH28_RS16265 PF02508 Rnf-Nqr subunit, membrane protein CHH28_RS16270 PF04060 Putative Fe-S cluster CHH28_RS16275 PF10531 SLBB domain CHH28_RS16275 PF13375 RnfC Barrel sandwich hybrid domain CHH28_RS16275 PF12838 4Fe-4S dicluster domain CHH28_RS16275 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CHH28_RS16280 PF03116 NQR2, RnfD, RnfE family CHH28_RS16285 PF04205 FMN-binding domain CHH28_RS16290 PF02508 Rnf-Nqr subunit, membrane protein CHH28_RS16295 PF17954 Quercetinase C-terminal cupin domain CHH28_RS16295 PF02678 Pirin CHH28_RS16310 PF12833 Helix-turn-helix domain CHH28_RS16310 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CHH28_RS16315 PF01590 GAF domain CHH28_RS16315 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS16315 PF00360 Phytochrome region CHH28_RS16315 PF00563 EAL domain CHH28_RS16325 PF02333 Phytase CHH28_RS16375 PF01235 Sodium:alanine symporter family CHH28_RS16380 PF00206 Lyase CHH28_RS16380 PF10415 Fumarase C C-terminus CHH28_RS16385 PF00710 Asparaginase, N-terminal CHH28_RS16385 PF17763 Glutaminase/Asparaginase C-terminal domain CHH28_RS16390 PF01551 Peptidase family M23 CHH28_RS16450 PF09312 SurA N-terminal domain CHH28_RS16450 PF00639 PPIC-type PPIASE domain CHH28_RS16485 PF01810 LysE type translocator CHH28_RS16490 PF12833 Helix-turn-helix domain CHH28_RS16490 PF02311 AraC-like ligand binding domain CHH28_RS16500 PF00255 Glutathione peroxidase CHH28_RS16505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS16505 PF03466 LysR substrate binding domain CHH28_RS16510 PF00107 Zinc-binding dehydrogenase CHH28_RS16510 PF08240 Alcohol dehydrogenase GroES-like domain CHH28_RS16515 PF00756 Putative esterase CHH28_RS16520 PF00860 Permease family CHH28_RS16525 PF00156 Phosphoribosyl transferase domain CHH28_RS16540 PF00899 ThiF family CHH28_RS16560 PF01458 Uncharacterized protein family (UPF0051) CHH28_RS16565 PF00005 ABC transporter CHH28_RS16570 PF01458 Uncharacterized protein family (UPF0051) CHH28_RS16575 PF00266 Aminotransferase class-V CHH28_RS16580 PF01521 Iron-sulphur cluster biosynthesis CHH28_RS16585 PF01883 Iron-sulfur cluster assembly protein CHH28_RS16590 PF02803 Thiolase, C-terminal domain CHH28_RS16590 PF00108 Thiolase, N-terminal domain CHH28_RS16600 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS16600 PF00563 EAL domain CHH28_RS16600 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS16610 PF00270 DEAD/DEAH box helicase CHH28_RS16610 PF08482 ATP-dependent helicase C-terminal CHH28_RS16610 PF04408 Helicase associated domain (HA2) CHH28_RS16610 PF00271 Helicase conserved C-terminal domain CHH28_RS16625 PF01810 LysE type translocator CHH28_RS16645 PF03169 OPT oligopeptide transporter protein CHH28_RS16655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS16655 PF03466 LysR substrate binding domain CHH28_RS16665 PF01914 MarC family integral membrane protein CHH28_RS16680 PF13411 MerR HTH family regulatory protein CHH28_RS16685 PF02567 Phenazine biosynthesis-like protein CHH28_RS16725 PF00873 AcrB/AcrD/AcrF family CHH28_RS16730 PF13533 Biotin-lipoyl like CHH28_RS16735 PF12833 Helix-turn-helix domain CHH28_RS16740 PF07715 TonB-dependent Receptor Plug Domain CHH28_RS16740 PF00593 TonB dependent receptor CHH28_RS16750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHH28_RS16755 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS16760 PF12911 N-terminal TM domain of oligopeptide transport permease C CHH28_RS16760 PF00528 Binding-protein-dependent transport system inner membrane component CHH28_RS16765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHH28_RS16765 PF00005 ABC transporter CHH28_RS16770 PF13305 Tetracyclin repressor-like, C-terminal domain CHH28_RS16770 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS16775 PF08669 Glycine cleavage T-protein C-terminal barrel domain CHH28_RS16775 PF01571 Aminomethyltransferase folate-binding domain CHH28_RS16780 PF01597 Glycine cleavage H-protein CHH28_RS16785 PF02347 Glycine cleavage system P-protein CHH28_RS16795 PF03458 UPF0126 domain CHH28_RS16810 PF00672 HAMP domain CHH28_RS16810 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS16810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS16810 PF01627 Hpt domain CHH28_RS16810 PF00072 Response regulator receiver domain CHH28_RS16825 PF03918 Cytochrome C biogenesis protein CHH28_RS16830 PF08534 Redoxin CHH28_RS16835 PF01578 Cytochrome C assembly protein CHH28_RS16835 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CHH28_RS16840 PF03100 CcmE CHH28_RS16850 PF01578 Cytochrome C assembly protein CHH28_RS16855 PF03379 CcmB protein CHH28_RS16860 PF00005 ABC transporter CHH28_RS16870 PF01312 FlhB HrpN YscU SpaS Family CHH28_RS16880 PF04055 Radical SAM superfamily CHH28_RS16880 PF06969 HemN C-terminal domain CHH28_RS16925 PF01515 Phosphate acetyl/butaryl transferase CHH28_RS16925 PF07085 DRTGG domain CHH28_RS16930 PF01553 Acyltransferase CHH28_RS16935 PF00563 EAL domain CHH28_RS16935 PF01590 GAF domain CHH28_RS16935 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS16935 PF00360 Phytochrome region CHH28_RS16940 PF00291 Pyridoxal-phosphate dependent enzyme CHH28_RS16955 PF16916 Dimerisation domain of Zinc Transporter CHH28_RS16955 PF01545 Cation efflux family CHH28_RS16960 PF00072 Response regulator receiver domain CHH28_RS16970 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CHH28_RS16975 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CHH28_RS16980 PF01048 Phosphorylase superfamily CHH28_RS16985 PF00933 Glycosyl hydrolase family 3 N terminal domain CHH28_RS16995 PF00440 Bacterial regulatory proteins, tetR family CHH28_RS17000 PF01726 LexA DNA binding domain CHH28_RS17000 PF00717 Peptidase S24-like CHH28_RS17010 PF00731 AIR carboxylase CHH28_RS17015 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CHH28_RS17015 PF02222 ATP-grasp domain CHH28_RS17020 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CHH28_RS17030 PF12729 Four helix bundle sensory module for signal transduction CHH28_RS17030 PF00672 HAMP domain CHH28_RS17030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS17050 PF08447 PAS fold CHH28_RS17050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS17095 PF00115 Cytochrome C and Quinol oxidase polypeptide I CHH28_RS17110 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CHH28_RS17110 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CHH28_RS17115 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CHH28_RS17115 PF12801 4Fe-4S binding domain CHH28_RS17115 PF13746 4Fe-4S dicluster domain CHH28_RS17125 PF00403 Heavy-metal-associated domain CHH28_RS17130 PF03597 Cytochrome oxidase maturation protein cbb3-type CHH28_RS17140 PF00027 Cyclic nucleotide-binding domain CHH28_RS17140 PF00325 Bacterial regulatory proteins, crp family CHH28_RS17150 PF01171 PP-loop family CHH28_RS17160 PF01272 Transcription elongation factor, GreA/GreB, C-term CHH28_RS17160 PF03449 Transcription elongation factor, N-terminal CHH28_RS17170 PF00684 DnaJ central domain CHH28_RS17170 PF01556 DnaJ C terminal domain CHH28_RS17170 PF00226 DnaJ domain CHH28_RS17180 PF08713 DNA alkylation repair enzyme CHH28_RS17220 PF00072 Response regulator receiver domain CHH28_RS17220 PF01627 Hpt domain CHH28_RS17220 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS17220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS17235 PF00072 Response regulator receiver domain CHH28_RS17235 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS17245 PF05193 Peptidase M16 inactive domain CHH28_RS17245 PF00675 Insulinase (Peptidase family M16) CHH28_RS17250 PF00106 short chain dehydrogenase CHH28_RS17270 PF02272 DHHA1 domain CHH28_RS17270 PF01368 DHH family CHH28_RS17270 PF17768 RecJ OB domain CHH28_RS17275 PF01068 ATP dependent DNA ligase domain CHH28_RS17275 PF14743 DNA ligase OB-like domain CHH28_RS17285 PF00106 short chain dehydrogenase CHH28_RS17290 PF01758 Sodium Bile acid symporter family CHH28_RS17295 PF03358 NADPH-dependent FMN reductase CHH28_RS17305 PF01022 Bacterial regulatory protein, arsR family CHH28_RS17350 PF05488 PAAR motif CHH28_RS17350 PF15538 Bacterial toxin 46 CHH28_RS17365 PF05488 PAAR motif CHH28_RS17365 PF15538 Bacterial toxin 46 CHH28_RS17435 PF05707 Zonular occludens toxin (Zot) CHH28_RS17455 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain CHH28_RS17455 PF00589 Phage integrase family CHH28_RS17470 PF00376 MerR family regulatory protein CHH28_RS17470 PF09278 MerR, DNA binding CHH28_RS17490 PF01209 ubiE/COQ5 methyltransferase family CHH28_RS17500 PF04851 Type III restriction enzyme, res subunit CHH28_RS17500 PF02151 UvrB/uvrC motif CHH28_RS17500 PF12344 Ultra-violet resistance protein B CHH28_RS17500 PF00271 Helicase conserved C-terminal domain CHH28_RS17500 PF17757 UvrB interaction domain CHH28_RS17505 PF00155 Aminotransferase class I and II CHH28_RS17510 PF00308 Bacterial dnaA protein CHH28_RS17520 PF00586 AIR synthase related protein, N-terminal domain CHH28_RS17520 PF02769 AIR synthase related protein, C-terminal domain CHH28_RS17525 PF00551 Formyl transferase CHH28_RS17535 PF00692 dUTPase CHH28_RS17580 PF03631 Virulence factor BrkB CHH28_RS17585 PF03960 ArsC family CHH28_RS17590 PF03358 NADPH-dependent FMN reductase CHH28_RS17615 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CHH28_RS17620 PF18073 Rubredoxin metal binding domain CHH28_RS17630 PF00216 Bacterial DNA-binding protein CHH28_RS17635 PF00575 S1 RNA binding domain CHH28_RS17640 PF02224 Cytidylate kinase CHH28_RS17645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CHH28_RS17650 PF00155 Aminotransferase class I and II CHH28_RS17655 PF01817 Chorismate mutase type II CHH28_RS17655 PF01842 ACT domain CHH28_RS17655 PF00800 Prephenate dehydratase CHH28_RS17660 PF00266 Aminotransferase class-V CHH28_RS17665 PF00521 DNA gyrase/topoisomerase IV, subunit A CHH28_RS17665 PF03989 DNA gyrase C-terminal domain, beta-propeller CHH28_RS17670 PF01979 Amidohydrolase family CHH28_RS17680 PF13419 Haloacid dehalogenase-like hydrolase CHH28_RS17685 PF00106 short chain dehydrogenase CHH28_RS17690 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS17695 PF01479 S4 domain CHH28_RS17695 PF00849 RNA pseudouridylate synthase CHH28_RS17700 PF04079 Segregation and condensation complex subunit ScpB CHH28_RS17705 PF02616 Segregation and condensation protein ScpA CHH28_RS17710 PF00579 tRNA synthetases class I (W and Y) CHH28_RS17715 PF01300 Telomere recombination CHH28_RS17720 PF02811 PHP domain CHH28_RS17725 PF03795 YCII-related domain CHH28_RS17730 PF08239 Bacterial SH3 domain CHH28_RS17740 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CHH28_RS17750 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CHH28_RS17750 PF01266 FAD dependent oxidoreductase CHH28_RS17760 PF06794 Uncharacterised protein family (UPF0270) CHH28_RS17770 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CHH28_RS17770 PF00561 alpha/beta hydrolase fold CHH28_RS17790 PF01264 Chorismate synthase CHH28_RS17795 PF05175 Methyltransferase small domain CHH28_RS17800 PF01734 Patatin-like phospholipase CHH28_RS17810 PF02075 Crossover junction endodeoxyribonuclease RuvC CHH28_RS17820 PF07724 AAA domain (Cdc48 subfamily) CHH28_RS17820 PF02861 Clp amino terminal domain, pathogenicity island component CHH28_RS17820 PF10431 C-terminal, D2-small domain, of ClpB protein CHH28_RS17820 PF17871 AAA lid domain CHH28_RS17820 PF00004 ATPase family associated with various cellular activities (AAA) CHH28_RS17830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS17830 PF03466 LysR substrate binding domain CHH28_RS17840 PF00595 PDZ domain CHH28_RS17840 PF17804 Tail specific protease N-terminal domain CHH28_RS17840 PF03572 Peptidase family S41 CHH28_RS17840 PF11818 C-terminal domain of tail specific protease (DUF3340) CHH28_RS17865 PF00999 Sodium/hydrogen exchanger family CHH28_RS17865 PF02254 TrkA-N domain CHH28_RS17870 PF00582 Universal stress protein family CHH28_RS17885 PF00892 EamA-like transporter family CHH28_RS17890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CHH28_RS17895 PF04348 LppC putative lipoprotein CHH28_RS17900 PF02021 Uncharacterised protein family UPF0102 CHH28_RS17905 PF13580 SIS domain CHH28_RS17910 PF01206 Sulfurtransferase TusA CHH28_RS17915 PF07690 Major Facilitator Superfamily CHH28_RS17935 PF02230 Phospholipase/Carboxylesterase CHH28_RS17940 PF03960 ArsC family CHH28_RS17945 PF14602 Hexapeptide repeat of succinyl-transferase CHH28_RS17945 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CHH28_RS17950 PF00392 Bacterial regulatory proteins, gntR family CHH28_RS17950 PF00155 Aminotransferase class I and II CHH28_RS17960 PF12706 Beta-lactamase superfamily domain CHH28_RS17965 PF10576 Iron-sulfur binding domain of endonuclease III CHH28_RS17965 PF00633 Helix-hairpin-helix motif CHH28_RS17965 PF00730 HhH-GPD superfamily base excision DNA repair protein CHH28_RS17975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS17975 PF00672 HAMP domain CHH28_RS17975 PF02743 Cache domain CHH28_RS17985 PF02253 Phospholipase A1 CHH28_RS18000 PF01047 MarR family CHH28_RS18005 PF00175 Oxidoreductase NAD-binding domain CHH28_RS18005 PF00970 Oxidoreductase FAD-binding domain CHH28_RS18010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS18010 PF03466 LysR substrate binding domain CHH28_RS18030 PF00764 Arginosuccinate synthase CHH28_RS18035 PF00691 OmpA family CHH28_RS18035 PF05736 OprF membrane domain CHH28_RS18045 PF00929 Exonuclease CHH28_RS18050 PF06062 Uncharacterised protein family (UPF0231) CHH28_RS18070 PF01263 Aldose 1-epimerase CHH28_RS18080 PF03466 LysR substrate binding domain CHH28_RS18080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS18100 PF03447 Homoserine dehydrogenase, NAD binding domain CHH28_RS18100 PF01842 ACT domain CHH28_RS18100 PF00742 Homoserine dehydrogenase CHH28_RS18125 PF12848 ABC transporter CHH28_RS18125 PF16326 ABC transporter C-terminal domain CHH28_RS18125 PF00005 ABC transporter CHH28_RS18130 PF00529 HlyD membrane-fusion protein of T1SS CHH28_RS18130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHH28_RS18135 PF00873 AcrB/AcrD/AcrF family CHH28_RS18225 PF01037 Lrp/AsnC ligand binding domain CHH28_RS18230 PF01810 LysE type translocator CHH28_RS18245 PF00082 Subtilase family CHH28_RS18245 PF04151 Bacterial pre-peptidase C-terminal domain CHH28_RS18255 PF00082 Subtilase family CHH28_RS18255 PF04151 Bacterial pre-peptidase C-terminal domain CHH28_RS18260 PF01752 Collagenase CHH28_RS18260 PF08453 Peptidase family M9 N-terminal CHH28_RS18265 PF12833 Helix-turn-helix domain CHH28_RS18285 PF07044 Protein of unknown function (DUF1329) CHH28_RS18290 PF01433 Peptidase family M1 domain CHH28_RS18290 PF11940 Domain of unknown function (DUF3458) Ig-like fold CHH28_RS18290 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CHH28_RS18300 PF07023 Protein of unknown function (DUF1315) CHH28_RS18305 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CHH28_RS18305 PF01694 Rhomboid family CHH28_RS18310 PF00149 Calcineurin-like phosphoesterase CHH28_RS18315 PF01513 ATP-NAD kinase CHH28_RS18335 PF08272 Topoisomerase I zinc-ribbon-like CHH28_RS18335 PF01131 DNA topoisomerase CHH28_RS18335 PF01751 Toprim domain CHH28_RS18335 PF01396 Topoisomerase DNA binding C4 zinc finger CHH28_RS18340 PF10531 SLBB domain CHH28_RS18375 PF12833 Helix-turn-helix domain CHH28_RS18380 PF00293 NUDIX domain CHH28_RS18395 PF10502 Signal peptidase, peptidase S26 CHH28_RS18400 PF12697 Alpha/beta hydrolase family CHH28_RS18405 PF01966 HD domain CHH28_RS18410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CHH28_RS18410 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS18425 PF03880 DbpA RNA binding domain CHH28_RS18425 PF12343 Cold shock protein DEAD box A CHH28_RS18425 PF00271 Helicase conserved C-terminal domain CHH28_RS18425 PF00270 DEAD/DEAH box helicase CHH28_RS18430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS18430 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS18430 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH28_RS18435 PF06865 Pyrimidine/purine nucleoside phosphorylase CHH28_RS18440 PF03707 Bacterial signalling protein N terminal repeat CHH28_RS18440 PF00563 EAL domain CHH28_RS18440 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS18450 PF12843 Putative quorum-sensing-regulated virulence factor CHH28_RS18455 PF00117 Glutamine amidotransferase class-I CHH28_RS18455 PF00958 GMP synthase C terminal domain CHH28_RS18455 PF02540 NAD synthase CHH28_RS18465 PF00860 Permease family CHH28_RS18475 PF00639 PPIC-type PPIASE domain CHH28_RS18475 PF09312 SurA N-terminal domain CHH28_RS18485 PF00005 ABC transporter CHH28_RS18485 PF12848 ABC transporter CHH28_RS18495 PF00557 Metallopeptidase family M24 CHH28_RS18500 PF13545 Crp-like helix-turn-helix domain CHH28_RS18500 PF00027 Cyclic nucleotide-binding domain CHH28_RS18505 PF03600 Citrate transporter CHH28_RS18525 PF09179 TilS substrate binding domain CHH28_RS18525 PF01171 PP-loop family CHH28_RS18525 PF11734 TilS substrate C-terminal domain CHH28_RS18530 PF01336 OB-fold nucleic acid binding domain CHH28_RS18530 PF02811 PHP domain CHH28_RS18530 PF14579 Helix-hairpin-helix motif CHH28_RS18530 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CHH28_RS18530 PF07733 Bacterial DNA polymerase III alpha NTPase domain CHH28_RS18555 PF06508 Queuosine biosynthesis protein QueC CHH28_RS18565 PF16197 Ketoacyl-synthetase C-terminal extension CHH28_RS18565 PF00109 Beta-ketoacyl synthase, N-terminal domain CHH28_RS18565 PF02801 Beta-ketoacyl synthase, C-terminal domain CHH28_RS18565 PF08659 KR domain CHH28_RS18565 PF08240 Alcohol dehydrogenase GroES-like domain CHH28_RS18565 PF00698 Acyl transferase domain CHH28_RS18565 PF14765 Polyketide synthase dehydratase CHH28_RS18565 PF00550 Phosphopantetheine attachment site CHH28_RS18570 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHH28_RS18570 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHH28_RS18575 PF00072 Response regulator receiver domain CHH28_RS18575 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS18580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CHH28_RS18580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHH28_RS18585 PF03466 LysR substrate binding domain CHH28_RS18585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS18590 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS18590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS18590 PF00672 HAMP domain CHH28_RS18595 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS18595 PF00072 Response regulator receiver domain CHH28_RS18600 PF02867 Ribonucleotide reductase, barrel domain CHH28_RS18600 PF03477 ATP cone domain CHH28_RS18600 PF00317 Ribonucleotide reductase, all-alpha domain CHH28_RS18605 PF00268 Ribonucleotide reductase, small chain CHH28_RS18610 PF00111 2Fe-2S iron-sulfur cluster binding domain CHH28_RS18620 PF00578 AhpC/TSA family CHH28_RS18625 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CHH28_RS18625 PF12833 Helix-turn-helix domain CHH28_RS18645 PF01584 CheW-like domain CHH28_RS18660 PF13614 AAA domain CHH28_RS18665 PF00691 OmpA family CHH28_RS18665 PF13677 Membrane MotB of proton-channel complex MotA/MotB CHH28_RS18670 PF01618 MotA/TolQ/ExbB proton channel family CHH28_RS18675 PF01339 CheB methylesterase CHH28_RS18675 PF00072 Response regulator receiver domain CHH28_RS18680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS18680 PF01627 Hpt domain CHH28_RS18680 PF01584 CheW-like domain CHH28_RS18680 PF02895 Signal transducing histidine kinase, homodimeric domain CHH28_RS18680 PF00072 Response regulator receiver domain CHH28_RS18685 PF04344 Chemotaxis phosphatase, CheZ CHH28_RS18690 PF00072 Response regulator receiver domain CHH28_RS18695 PF04542 Sigma-70 region 2 CHH28_RS18695 PF04545 Sigma-70, region 4 CHH28_RS18695 PF04539 Sigma-70 region 3 CHH28_RS18700 PF10609 NUBPL iron-transfer P-loop NTPase CHH28_RS18705 PF00448 SRP54-type protein, GTPase domain CHH28_RS18710 PF00771 FHIPEP family CHH28_RS18715 PF01312 FlhB HrpN YscU SpaS Family CHH28_RS18720 PF01311 Bacterial export proteins, family 1 CHH28_RS18725 PF01313 Bacterial export proteins, family 3 CHH28_RS18730 PF00813 FliP family CHH28_RS18735 PF04347 Flagellar biosynthesis protein, FliO CHH28_RS18740 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHH28_RS18745 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHH28_RS18745 PF02154 Flagellar motor switch protein FliM CHH28_RS18765 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS18765 PF00072 Response regulator receiver domain CHH28_RS18770 PF13466 STAS domain CHH28_RS18775 PF00072 Response regulator receiver domain CHH28_RS18775 PF01339 CheB methylesterase CHH28_RS18780 PF03975 CheD chemotactic sensory transduction CHH28_RS18785 PF03705 CheR methyltransferase, all-alpha domain CHH28_RS18785 PF01739 CheR methyltransferase, SAM binding domain CHH28_RS18790 PF00672 HAMP domain CHH28_RS18790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS18790 PF02203 Tar ligand binding domain homologue CHH28_RS18795 PF01584 CheW-like domain CHH28_RS18800 PF02895 Signal transducing histidine kinase, homodimeric domain CHH28_RS18800 PF09078 CheY binding CHH28_RS18800 PF01584 CheW-like domain CHH28_RS18800 PF01627 Hpt domain CHH28_RS18800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS18805 PF00486 Transcriptional regulatory protein, C terminal CHH28_RS18805 PF00072 Response regulator receiver domain CHH28_RS18820 PF18269 T3SS EscN ATPase C-terminal domain CHH28_RS18820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHH28_RS18830 PF14841 FliG middle domain CHH28_RS18830 PF14842 FliG N-terminal domain CHH28_RS18830 PF01706 FliG C-terminal domain CHH28_RS18835 PF01514 Secretory protein of YscJ/FliF family CHH28_RS18835 PF08345 Flagellar M-ring protein C-terminal CHH28_RS18840 PF02049 Flagellar hook-basal body complex protein FliE CHH28_RS18845 PF02954 Bacterial regulatory protein, Fis family CHH28_RS18845 PF00072 Response regulator receiver domain CHH28_RS18845 PF00158 Sigma-54 interaction domain CHH28_RS18850 PF13188 PAS domain CHH28_RS18850 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS18850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS18855 PF06490 Flagellar regulatory protein FleQ CHH28_RS18855 PF02954 Bacterial regulatory protein, Fis family CHH28_RS18855 PF00158 Sigma-54 interaction domain CHH28_RS18860 PF02561 Flagellar protein FliS CHH28_RS18875 PF03167 Uracil DNA glycosylase superfamily CHH28_RS18880 PF00152 tRNA synthetases class II (D, K and N) CHH28_RS18880 PF01336 OB-fold nucleic acid binding domain CHH28_RS18885 PF00472 RF-1 domain CHH28_RS18885 PF03462 PCRF domain CHH28_RS18890 PF04324 BFD-like [2Fe-2S] binding domain CHH28_RS18895 PF07196 Flagellin hook IN motif CHH28_RS18895 PF07195 Flagellar hook-associated protein 2 C-terminus CHH28_RS18895 PF02465 Flagellar hook-associated protein 2 N-terminus CHH28_RS18905 PF00700 Bacterial flagellin C-terminal helical region CHH28_RS18905 PF00669 Bacterial flagellin N-terminal helical region CHH28_RS18905 PF00700 Bacterial flagellin C-terminal helical region CHH28_RS18905 PF00669 Bacterial flagellin N-terminal helical region CHH28_RS18910 PF00669 Bacterial flagellin N-terminal helical region CHH28_RS18915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH28_RS18915 PF00460 Flagella basal body rod protein CHH28_RS18920 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CHH28_RS18920 PF10135 Rod binding protein CHH28_RS18930 PF02119 Flagellar P-ring protein CHH28_RS18935 PF02107 Flagellar L-ring protein CHH28_RS18940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH28_RS18940 PF00460 Flagella basal body rod protein CHH28_RS18945 PF00460 Flagella basal body rod protein CHH28_RS18945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH28_RS18950 PF00460 Flagella basal body rod protein CHH28_RS18950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH28_RS18950 PF07559 Flagellar basal body protein FlaE CHH28_RS18955 PF13861 FlgD Tudor-like domain CHH28_RS18955 PF13860 FlgD Ig-like domain CHH28_RS18955 PF03963 Flagellar hook capping protein - N-terminal region CHH28_RS18960 PF00460 Flagella basal body rod protein CHH28_RS18960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHH28_RS18965 PF00460 Flagella basal body rod protein CHH28_RS18970 PF03705 CheR methyltransferase, all-alpha domain CHH28_RS18970 PF01739 CheR methyltransferase, SAM binding domain CHH28_RS18975 PF01584 CheW-like domain CHH28_RS18975 PF00072 Response regulator receiver domain CHH28_RS19010 PF08240 Alcohol dehydrogenase GroES-like domain CHH28_RS19010 PF00107 Zinc-binding dehydrogenase CHH28_RS19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHH28_RS19015 PF03466 LysR substrate binding domain CHH28_RS19040 PF01694 Rhomboid family CHH28_RS19060 PF04012 PspA/IM30 family CHH28_RS19070 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS19070 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHH28_RS19070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS19075 PF13407 Periplasmic binding protein domain CHH28_RS19080 PF01047 MarR family CHH28_RS19085 PF02566 OsmC-like protein CHH28_RS19100 PF00376 MerR family regulatory protein CHH28_RS19100 PF09278 MerR, DNA binding CHH28_RS19120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS19120 PF00672 HAMP domain CHH28_RS19130 PF00464 Serine hydroxymethyltransferase CHH28_RS19145 PF01619 Proline dehydrogenase CHH28_RS19145 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CHH28_RS19145 PF14850 DNA-binding domain of Proline dehydrogenase CHH28_RS19145 PF00171 Aldehyde dehydrogenase family CHH28_RS19150 PF00474 Sodium:solute symporter family CHH28_RS19155 PF03477 ATP cone domain CHH28_RS19160 PF01872 RibD C-terminal domain CHH28_RS19160 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CHH28_RS19165 PF00677 Lumazine binding domain CHH28_RS19170 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CHH28_RS19170 PF00925 GTP cyclohydrolase II CHH28_RS19175 PF00885 6,7-dimethyl-8-ribityllumazine synthase CHH28_RS19180 PF01029 NusB family CHH28_RS19185 PF00586 AIR synthase related protein, N-terminal domain CHH28_RS19185 PF02769 AIR synthase related protein, C-terminal domain CHH28_RS19215 PF01638 HxlR-like helix-turn-helix CHH28_RS19225 PF00753 Metallo-beta-lactamase superfamily CHH28_RS19230 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHH28_RS19230 PF10518 TAT (twin-arginine translocation) pathway signal sequence CHH28_RS19230 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CHH28_RS19235 PF00916 Sulfate permease family CHH28_RS19235 PF01740 STAS domain CHH28_RS19240 PF00378 Enoyl-CoA hydratase/isomerase CHH28_RS19245 PF00762 Ferrochelatase CHH28_RS19250 PF02556 Preprotein translocase subunit SecB CHH28_RS19255 PF00581 Rhodanese-like domain CHH28_RS19260 PF01676 Metalloenzyme superfamily CHH28_RS19260 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CHH28_RS19265 PF01551 Peptidase family M23 CHH28_RS19270 PF03572 Peptidase family S41 CHH28_RS19270 PF13180 PDZ domain CHH28_RS19275 PF04748 Divergent polysaccharide deacetylase CHH28_RS19285 PF04030 D-arabinono-1,4-lactone oxidase CHH28_RS19285 PF01565 FAD binding domain CHH28_RS19290 PF03942 DTW domain CHH28_RS19295 PF13344 Haloacid dehalogenase-like hydrolase CHH28_RS19300 PF03150 Di-haem cytochrome c peroxidase CHH28_RS19325 PF03104 DNA polymerase family B, exonuclease domain CHH28_RS19325 PF00136 DNA polymerase family B CHH28_RS19340 PF00005 ABC transporter CHH28_RS19345 PF01032 FecCD transport family CHH28_RS19350 PF00355 Rieske [2Fe-2S] domain CHH28_RS19355 PF03749 Sugar fermentation stimulation protein RE domain CHH28_RS19355 PF17746 SfsA N-terminal OB domain CHH28_RS19360 PF00155 Aminotransferase class I and II CHH28_RS19365 PF01258 Prokaryotic dksA/traR C4-type zinc finger CHH28_RS19370 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHH28_RS19375 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS19375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS19375 PF00989 PAS fold CHH28_RS19380 PF00158 Sigma-54 interaction domain CHH28_RS19380 PF02954 Bacterial regulatory protein, Fis family CHH28_RS19380 PF00072 Response regulator receiver domain CHH28_RS19385 PF01743 Poly A polymerase head domain CHH28_RS19385 PF12626 Polymerase A arginine-rich C-terminus CHH28_RS19385 PF12627 Probable RNA and SrmB- binding site of polymerase A CHH28_RS19390 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CHH28_RS19400 PF02463 RecF/RecN/SMC N terminal domain CHH28_RS19410 PF01810 LysE type translocator CHH28_RS19430 PF02548 Ketopantoate hydroxymethyltransferase CHH28_RS19435 PF02569 Pantoate-beta-alanine ligase CHH28_RS19440 PF02261 Aspartate decarboxylase CHH28_RS19445 PF00342 Phosphoglucose isomerase CHH28_RS19450 PF00672 HAMP domain CHH28_RS19450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHH28_RS19450 PF17200 Single Cache domain 2 CHH28_RS19455 PF01008 Initiation factor 2 subunit family CHH28_RS19460 PF00596 Class II Aldolase and Adducin N-terminal domain CHH28_RS19465 PF03079 ARD/ARD' family CHH28_RS19480 PF03099 Biotin/lipoate A/B protein ligase family CHH28_RS19485 PF04359 Protein of unknown function (DUF493) CHH28_RS19490 PF00768 D-alanyl-D-alanine carboxypeptidase CHH28_RS19490 PF07943 Penicillin-binding protein 5, C-terminal domain CHH28_RS19505 PF02810 SEC-C motif CHH28_RS19520 PF09335 SNARE associated Golgi protein CHH28_RS19540 PF00171 Aldehyde dehydrogenase family CHH28_RS19545 PF01467 Cytidylyltransferase-like CHH28_RS19555 PF02590 Predicted SPOUT methyltransferase CHH28_RS19560 PF00905 Penicillin binding protein transpeptidase domain CHH28_RS19560 PF03717 Penicillin-binding Protein dimerisation domain CHH28_RS19565 PF01098 Cell cycle protein CHH28_RS19570 PF13406 Transglycosylase SLT domain CHH28_RS19575 PF03330 Lytic transglycolase CHH28_RS19575 PF05036 Sporulation related domain CHH28_RS19590 PF00211 Adenylate and Guanylate cyclase catalytic domain CHH28_RS19600 PF00534 Glycosyl transferases group 1 CHH28_RS19600 PF13439 Glycosyltransferase Family 4 CHH28_RS19630 PF01266 FAD dependent oxidoreductase CHH28_RS19650 PF00258 Flavodoxin CHH28_RS19665 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CHH28_RS19665 PF12833 Helix-turn-helix domain CHH28_RS19670 PF00534 Glycosyl transferases group 1 CHH28_RS19670 PF13439 Glycosyltransferase Family 4 CHH28_RS19675 PF01569 PAP2 superfamily CHH28_RS19680 PF11798 IMS family HHH motif CHH28_RS19680 PF11799 impB/mucB/samB family C-terminal domain CHH28_RS19680 PF00817 impB/mucB/samB family CHH28_RS19690 PF05209 Septum formation inhibitor MinC, N-terminal domain CHH28_RS19690 PF03775 Septum formation inhibitor MinC, C-terminal domain CHH28_RS19695 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CHH28_RS19700 PF03776 Septum formation topological specificity factor MinE CHH28_RS19710 PF00990 Diguanylate cyclase, GGDEF domain CHH28_RS19720 PF00873 AcrB/AcrD/AcrF family CHH28_RS19740 PF02580 D-Tyr-tRNA(Tyr) deacylase CHH28_RS19750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHH28_RS19750 PF00989 PAS fold CHH28_RS19750 PF00512 His Kinase A (phospho-acceptor) domain CHH28_RS19755 PF00072 Response regulator receiver domain CHH28_RS19755 PF02954 Bacterial regulatory protein, Fis family CHH28_RS19755 PF00158 Sigma-54 interaction domain