locus-tag class description BF0001 PF00588 SpoU rRNA Methylase family BF0001 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF0004 PF00535 Glycosyl transferase family 2 BF0012 PF00005 ABC transporter BF0012 PF03412 Peptidase C39 family BF0012 PF00664 ABC transporter transmembrane region BF0015 PF01926 50S ribosome-binding GTPase BF0015 PF01018 GTP1/OBG BF0015 PF04055 Radical SAM superfamily BF0017 PF00884 Sulfatase BF0019 PF07715 TonB-dependent Receptor Plug Domain BF0019 PF00593 TonB dependent receptor BF0020 PF00916 Sulfate permease family BF0020 PF01740 STAS domain BF0021 PF02915 Rubrerythrin BF0022 PF02910 Fumarate reductase flavoprotein C-term BF0022 PF00890 FAD binding domain BF0024 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF0024 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF0026 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BF0026 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BF0028 PF01938 TRAM domain BF0028 PF00919 Uncharacterized protein family UPF0004 BF0028 PF04055 Radical SAM superfamily BF0030 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF0030 PF00703 Glycosyl hydrolases family 2 BF0030 PF16355 Domain of unknown function (DUF4982) BF0030 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF0054 PF18075 FtsX extracellular domain BF0056 PF02673 Bacitracin resistance protein BacA BF0057 PF01509 TruB family pseudouridylate synthase (N terminal domain) BF0057 PF16198 tRNA pseudouridylate synthase B C-terminal domain BF0058 PF02547 Queuosine biosynthesis protein BF0059 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BF0061 PF00438 S-adenosylmethionine synthetase, N-terminal domain BF0061 PF02772 S-adenosylmethionine synthetase, central domain BF0061 PF02773 S-adenosylmethionine synthetase, C-terminal domain BF0062 PF03641 Possible lysine decarboxylase BF0065 PF00825 Ribonuclease P BF0066 PF01809 Putative membrane protein insertion efficiency factor BF0067 PF01026 TatD related DNase BF0068 PF00579 tRNA synthetases class I (W and Y) BF0069 PF00326 Prolyl oligopeptidase family BF0069 PF07676 WD40-like Beta Propeller Repeat BF0070 PF00884 Sulfatase BF0070 PF12411 Choline sulfatase enzyme C terminal BF0071 PF04962 KduI/IolB family BF0074 PF08331 Domain of unknown function (DUF1730) BF0075 PF01522 Polysaccharide deacetylase BF0079 PF00005 ABC transporter BF0081 PF01266 FAD dependent oxidoreductase BF0081 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BF0084 PF02844 Phosphoribosylglycinamide synthetase, N domain BF0084 PF02843 Phosphoribosylglycinamide synthetase, C domain BF0084 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BF0085 PF00326 Prolyl oligopeptidase family BF0085 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BF0086 PF02926 THUMP domain BF0086 PF01170 Putative RNA methylase family UPF0020 BF0087 PF00132 Bacterial transferase hexapeptide (six repeats) BF0088 PF06580 Histidine kinase BF0088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0088 PF07694 5TMR of 5TMR-LYT BF0089 PF04397 LytTr DNA-binding domain BF0089 PF00072 Response regulator receiver domain BF0091 PF01367 5'-3' exonuclease, C-terminal SAM fold BF0091 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF0091 PF00476 DNA polymerase family A BF0091 PF01612 3'-5' exonuclease BF0092 PF00348 Polyprenyl synthetase BF0095 PF01791 DeoC/LacD family aldolase BF0096 PF03819 MazG nucleotide pyrophosphohydrolase domain BF0097 PF02580 D-Tyr-tRNA(Tyr) deacylase BF0098 PF01541 GIY-YIG catalytic domain BF0098 PF08459 UvrC Helix-hairpin-helix N-terminal BF0099 PF00156 Phosphoribosyl transferase domain BF0100 PF13932 GidA associated domain BF0100 PF01134 Glucose inhibited division protein A BF0114 PF01807 CHC2 zinc finger BF0114 PF08275 DNA primase catalytic core, N-terminal domain BF0135 PF13635 Domain of unknown function (DUF4143) BF0135 PF13173 AAA domain BF0138 PF02954 Bacterial regulatory protein, Fis family BF0138 PF00158 Sigma-54 interaction domain BF0138 PF00072 Response regulator receiver domain BF0139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0139 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF0139 PF00512 His Kinase A (phospho-acceptor) domain BF0139 PF01627 Hpt domain BF0139 PF00072 Response regulator receiver domain BF0140 PF00512 His Kinase A (phospho-acceptor) domain BF0140 PF09308 LuxQ, periplasmic BF0140 PF00072 Response regulator receiver domain BF0140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0141 PF00679 Elongation factor G C-terminus BF0141 PF14492 Elongation Factor G, domain II BF0141 PF00009 Elongation factor Tu GTP binding domain BF0141 PF03764 Elongation factor G, domain IV BF0144 PF01751 Toprim domain BF0144 PF01131 DNA topoisomerase BF0152 PF02899 Phage integrase, N-terminal SAM-like domain BF0152 PF00589 Phage integrase family BF0156 PF02130 Uncharacterized protein family UPF0054 BF0161 PF07670 Nucleoside recognition BF0163 PF17864 RuvB AAA lid domain BF0163 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF0163 PF05491 RuvB C-terminal winged helix domain BF0166 PF10459 Peptidase S46 BF0169 PF00270 DEAD/DEAH box helicase BF0169 PF00271 Helicase conserved C-terminal domain BF0171 PF00294 pfkB family carbohydrate kinase BF0172 PF00571 CBS domain BF0172 PF01380 SIS domain BF0173 PF03641 Possible lysine decarboxylase BF0174 PF00675 Insulinase (Peptidase family M16) BF0174 PF05193 Peptidase M16 inactive domain BF0177 PF03786 D-mannonate dehydratase (UxuA) BF0178 PF00106 short chain dehydrogenase BF0180 PF10502 Signal peptidase, peptidase S26 BF0181 PF10502 Signal peptidase, peptidase S26 BF0182 PF05173 Dihydrodipicolinate reductase, C-terminus BF0182 PF01113 Dihydrodipicolinate reductase, N-terminus BF0188 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BF0188 PF00132 Bacterial transferase hexapeptide (six repeats) BF0189 PF02321 Outer membrane efflux protein BF0190 PF00873 AcrB/AcrD/AcrF family BF0191 PF00529 HlyD membrane-fusion protein of T1SS BF0191 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF0192 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF0192 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF0192 PF16353 Domain of unknown function(DUF4981) BF0192 PF00703 Glycosyl hydrolases family 2 BF0192 PF02929 Beta galactosidase small chain BF0196 PF09190 DALR domain BF0196 PF01406 tRNA synthetases class I (C) catalytic domain BF0199 PF00072 Response regulator receiver domain BF0199 PF00486 Transcriptional regulatory protein, C terminal BF0200 PF00512 His Kinase A (phospho-acceptor) domain BF0200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0209 PF00072 Response regulator receiver domain BF0209 PF00486 Transcriptional regulatory protein, C terminal BF0210 PF18719 ArlS sensor domain BF0210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0210 PF00512 His Kinase A (phospho-acceptor) domain BF0211 PF00690 Cation transporter/ATPase, N-terminus BF0211 PF00689 Cation transporting ATPase, C-terminus BF0214 PF00271 Helicase conserved C-terminal domain BF0214 PF00176 SNF2 family N-terminal domain BF0214 PF12419 SNF2 Helicase protein BF0217 PF00365 Phosphofructokinase BF0218 PF14622 Ribonuclease-III-like BF0218 PF00035 Double-stranded RNA binding motif BF0219 PF00109 Beta-ketoacyl synthase, N-terminal domain BF0219 PF02801 Beta-ketoacyl synthase, C-terminal domain BF0220 PF00550 Phosphopantetheine attachment site BF0221 PF00551 Formyl transferase BF0222 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF0222 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF0222 PF11890 Domain of unknown function (DUF3410) BF0225 PF01501 Glycosyl transferase family 8 BF0226 PF05686 Glycosyl transferase family 90 BF0227 PF00535 Glycosyl transferase family 2 BF0228 PF01501 Glycosyl transferase family 8 BF0228 PF00535 Glycosyl transferase family 2 BF0229 PF00005 ABC transporter BF0229 PF00664 ABC transporter transmembrane region BF0231 PF01693 Caulimovirus viroplasmin BF0235 PF01202 Shikimate kinase BF0237 PF00183 Hsp90 protein BF0239 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BF0239 PF17944 Arginine decarboxylase C-terminal helical extension BF0239 PF17810 Arginine decarboxylase helical bundle domain BF0240 PF00696 Amino acid kinase family BF0241 PF08281 Sigma-70, region 4 BF0241 PF04542 Sigma-70 region 2 BF0253 PF07881 L-fucose isomerase, first N-terminal domain BF0253 PF02952 L-fucose isomerase, C-terminal domain BF0253 PF07882 L-fucose isomerase, second N-terminal domain BF0254 PF00465 Iron-containing alcohol dehydrogenase BF0255 PF00596 Class II Aldolase and Adducin N-terminal domain BF0256 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF0256 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF0257 PF07690 Major Facilitator Superfamily BF0261 PF02576 RimP N-terminal domain BF0261 PF17384 RimP C-terminal SH3 domain BF0262 PF08529 NusA N-terminal domain BF0262 PF00575 S1 RNA binding domain BF0262 PF13184 NusA-like KH domain BF0263 PF00009 Elongation factor Tu GTP binding domain BF0263 PF04760 Translation initiation factor IF-2, N-terminal region BF0263 PF11987 Translation-initiation factor 2 BF0265 PF01458 Uncharacterized protein family (UPF0051) BF0267 PF00005 ABC transporter BF0268 PF01458 Uncharacterized protein family (UPF0051) BF0269 PF00266 Aminotransferase class-V BF0270 PF01906 Putative heavy-metal-binding BF0271 PF16499 Alpha galactosidase A BF0271 PF17801 Alpha galactosidase C-terminal beta sandwich domain BF0273 PF07715 TonB-dependent Receptor Plug Domain BF0273 PF00593 TonB dependent receptor BF0287 PF16874 Glycosyl hydrolase family 36 C-terminal domain BF0287 PF16875 Glycosyl hydrolase family 36 N-terminal domain BF0289 PF03030 Inorganic H+ pyrophosphatase BF0290 PF01351 Ribonuclease HII BF0292 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BF0292 PF01676 Metalloenzyme superfamily BF0293 PF00989 PAS fold BF0293 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0293 PF00512 His Kinase A (phospho-acceptor) domain BF0297 PF00204 DNA gyrase B BF0297 PF00986 DNA gyrase B subunit, carboxyl terminus BF0297 PF01751 Toprim domain BF0297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0298 PF01649 Ribosomal protein S20 BF0300 PF11967 Recombination protein O N terminal BF0300 PF02565 Recombination protein O C terminal BF0301 PF09424 Yqey-like protein BF0302 PF00091 Tubulin/FtsZ family, GTPase domain BF0302 PF12327 FtsZ family, C-terminal domain BF0303 PF02491 SHS2 domain inserted in FTSA BF0305 PF02875 Mur ligase family, glutamate ligase domain BF0305 PF08245 Mur ligase middle domain BF0305 PF01225 Mur ligase family, catalytic domain BF0306 PF03033 Glycosyltransferase family 28 N-terminal domain BF0306 PF04101 Glycosyltransferase family 28 C-terminal domain BF0307 PF01098 Cell cycle protein BF0308 PF02875 Mur ligase family, glutamate ligase domain BF0308 PF08245 Mur ligase middle domain BF0309 PF00953 Glycosyl transferase family 4 BF0310 PF01225 Mur ligase family, catalytic domain BF0310 PF02875 Mur ligase family, glutamate ligase domain BF0310 PF08245 Mur ligase middle domain BF0311 PF03717 Penicillin-binding Protein dimerisation domain BF0311 PF00905 Penicillin binding protein transpeptidase domain BF0313 PF01795 MraW methylase family BF0314 PF02381 MraZ protein, putative antitoxin-like BF0316 PF04542 Sigma-70 region 2 BF0316 PF08281 Sigma-70, region 4 BF0318 PF00593 TonB dependent receptor BF0318 PF07715 TonB-dependent Receptor Plug Domain BF0323 PF01966 HD domain BF0324 PF00692 dUTPase BF0327 PF01551 Peptidase family M23 BF0328 PF12833 Helix-turn-helix domain BF0328 PF07495 Y_Y_Y domain BF0328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0328 PF00512 His Kinase A (phospho-acceptor) domain BF0328 PF00072 Response regulator receiver domain BF0328 PF07494 Two component regulator propeller BF0329 PF04616 Glycosyl hydrolases family 43 BF0329 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain BF0330 PF14310 Fibronectin type III-like domain BF0330 PF07691 PA14 domain BF0330 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF0330 PF00933 Glycosyl hydrolase family 3 N terminal domain BF0332 PF02929 Beta galactosidase small chain BF0332 PF16353 Domain of unknown function(DUF4981) BF0332 PF00703 Glycosyl hydrolases family 2 BF0332 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF0332 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF0335 PF04616 Glycosyl hydrolases family 43 BF0335 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain BF0339 PF07748 Glycosyl hydrolases family 38 C-terminal domain BF0339 PF01074 Glycosyl hydrolases family 38 N-terminal domain BF0339 PF09261 Alpha mannosidase middle domain BF0339 PF01074 Glycosyl hydrolases family 38 N-terminal domain BF0339 PF07748 Glycosyl hydrolases family 38 C-terminal domain BF0339 PF09261 Alpha mannosidase middle domain BF0340 PF07715 TonB-dependent Receptor Plug Domain BF0340 PF00593 TonB dependent receptor BF0344 PF04616 Glycosyl hydrolases family 43 BF0350 PF07971 Glycosyl hydrolase family 92 BF0350 PF17678 Glycosyl hydrolase family 92 N-terminal domain BF0352 PF01263 Aldose 1-epimerase BF0353 PF07786 Protein of unknown function (DUF1624) BF0353 PF04235 Protein of unknown function (DUF418) BF0364 PF01757 Acyltransferase family BF0370 PF02018 Carbohydrate binding domain BF0370 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BF0371 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain BF0371 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain BF0371 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain BF0371 PF08531 Alpha-L-rhamnosidase N-terminal domain BF0372 PF01546 Peptidase family M20/M25/M40 BF0372 PF07687 Peptidase dimerisation domain BF0373 PF00501 AMP-binding enzyme BF0374 PF00472 RF-1 domain BF0374 PF03462 PCRF domain BF0376 PF01928 CYTH domain BF0380 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF0380 PF00703 Glycosyl hydrolases family 2 BF0380 PF16355 Domain of unknown function (DUF4982) BF0380 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF0381 PF00728 Glycosyl hydrolase family 20, catalytic domain BF0381 PF07691 PA14 domain BF0381 PF02838 Glycosyl hydrolase family 20, domain 2 BF0383 PF07470 Glycosyl Hydrolase Family 88 BF0387 PF00593 TonB dependent receptor BF0387 PF07715 TonB-dependent Receptor Plug Domain BF0388 PF07494 Two component regulator propeller BF0388 PF00072 Response regulator receiver domain BF0388 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0388 PF07495 Y_Y_Y domain BF0388 PF00512 His Kinase A (phospho-acceptor) domain BF0388 PF12833 Helix-turn-helix domain BF0389 PF07494 Two component regulator propeller BF0389 PF12833 Helix-turn-helix domain BF0389 PF07495 Y_Y_Y domain BF0389 PF00072 Response regulator receiver domain BF0389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0389 PF00512 His Kinase A (phospho-acceptor) domain BF0392 PF00933 Glycosyl hydrolase family 3 N terminal domain BF0392 PF14310 Fibronectin type III-like domain BF0392 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF0394 PF07715 TonB-dependent Receptor Plug Domain BF0394 PF00593 TonB dependent receptor BF0407 PF00593 TonB dependent receptor BF0407 PF07715 TonB-dependent Receptor Plug Domain BF0411 PF00521 DNA gyrase/topoisomerase IV, subunit A BF0412 PF03129 Anticodon binding domain BF0413 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BF0413 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF0420 PF02335 Cytochrome c552 BF0422 PF01578 Cytochrome C assembly protein BF0425 PF00144 Beta-lactamase BF0426 PF01380 SIS domain BF0430 PF07075 Protein of unknown function (DUF1343) BF0434 PF00535 Glycosyl transferase family 2 BF0437 PF00474 Sodium:solute symporter family BF0438 PF07075 Protein of unknown function (DUF1343) BF0439 PF14322 Starch-binding associating with outer membrane BF0439 PF07980 SusD family BF0440 PF07715 TonB-dependent Receptor Plug Domain BF0440 PF00593 TonB dependent receptor BF0444 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF0444 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF0445 PF00999 Sodium/hydrogen exchanger family BF0445 PF00582 Universal stress protein family BF0446 PF00899 ThiF family BF0447 PF00005 ABC transporter BF0449 PF00209 Sodium:neurotransmitter symporter family BF0451 PF08245 Mur ligase middle domain BF0451 PF02875 Mur ligase family, glutamate ligase domain BF0451 PF01225 Mur ligase family, catalytic domain BF0454 PF00282 Pyridoxal-dependent decarboxylase conserved domain BF0455 PF04960 Glutaminase BF0456 PF18415 Histidine kinase receptor ArcB trans-membrane domain BF0456 PF00072 Response regulator receiver domain BF0456 PF00512 His Kinase A (phospho-acceptor) domain BF0456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0456 PF01627 Hpt domain BF0456 PF00989 PAS fold BF0457 PF00809 Pterin binding enzyme BF0458 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF0473 PF04172 LrgB-like family BF0474 PF03788 LrgA family BF0478 PF01515 Phosphate acetyl/butaryl transferase BF0479 PF00871 Acetokinase family BF0480 PF00245 Alkaline phosphatase BF0481 PF01883 Iron-sulfur cluster assembly protein BF0482 PF00149 Calcineurin-like phosphoesterase BF0483 PF04002 RadC-like JAB domain BF0484 PF00535 Glycosyl transferase family 2 BF0486 PF01132 Elongation factor P (EF-P) OB domain BF0486 PF09285 Elongation factor P, C-terminal BF0486 PF08207 Elongation factor P (EF-P) KOW-like domain BF0487 PF00468 Ribosomal protein L34 BF0488 PF00069 Protein kinase domain BF0488 PF03793 PASTA domain BF0489 PF00849 RNA pseudouridylate synthase BF0489 PF01479 S4 domain BF0490 PF01820 D-ala D-ala ligase N-terminus BF0490 PF07478 D-ala D-ala ligase C-terminus BF0494 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF0494 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF0499 PF01472 PUA domain BF0499 PF00696 Amino acid kinase family BF0501 PF01177 Asp/Glu/Hydantoin racemase BF0504 PF07244 Surface antigen variable number repeat BF0504 PF01103 Surface antigen BF0505 PF01255 Putative undecaprenyl diphosphate synthase BF0507 PF01872 RibD C-terminal domain BF0507 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF0508 PF05175 Methyltransferase small domain BF0508 PF17827 PrmC N-terminal domain BF0509 PF02631 RecX family BF0510 PF00156 Phosphoribosyl transferase domain BF0512 PF00206 Lyase BF0519 PF01734 Patatin-like phospholipase BF0528 PF00501 AMP-binding enzyme BF0528 PF13193 AMP-binding enzyme C-terminal domain BF0529 PF07883 Cupin domain BF0529 PF01381 Helix-turn-helix BF0530 PF03807 NADP oxidoreductase coenzyme F420-dependent BF0530 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF0531 PF00202 Aminotransferase class-III BF0532 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF0532 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF0533 PF00764 Arginosuccinate synthase BF0535 PF02863 Arginine repressor, C-terminal domain BF0535 PF01316 Arginine repressor, DNA binding domain BF0538 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BF0538 PF00072 Response regulator receiver domain BF0538 PF01627 Hpt domain BF0538 PF00512 His Kinase A (phospho-acceptor) domain BF0538 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0538 PF00672 HAMP domain BF0539 PF13520 Amino acid permease BF0541 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF0541 PF00056 lactate/malate dehydrogenase, NAD binding domain BF0542 PF13509 S1 domain BF0542 PF17783 CvfB-like winged helix domain BF0546 PF00912 Transglycosylase BF0548 PF05192 MutS domain III BF0548 PF00488 MutS domain V BF0548 PF05190 MutS family domain IV BF0548 PF05188 MutS domain II BF0548 PF01624 MutS domain I BF0550 PF16875 Glycosyl hydrolase family 36 N-terminal domain BF0550 PF16874 Glycosyl hydrolase family 36 C-terminal domain BF0553 PF07715 TonB-dependent Receptor Plug Domain BF0553 PF00593 TonB dependent receptor BF0559 PF12704 MacB-like periplasmic core domain BF0559 PF02687 FtsX-like permease family BF0559 PF00005 ABC transporter BF0560 PF00005 ABC transporter BF0560 PF12704 MacB-like periplasmic core domain BF0560 PF02687 FtsX-like permease family BF0561 PF00005 ABC transporter BF0562 PF00480 ROK family BF0563 PF01245 Ribosomal protein L19 BF0564 PF00149 Calcineurin-like phosphoesterase BF0564 PF02872 5'-nucleotidase, C-terminal domain BF0565 PF00149 Calcineurin-like phosphoesterase BF0565 PF02872 5'-nucleotidase, C-terminal domain BF0566 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF0566 PF00933 Glycosyl hydrolase family 3 N terminal domain BF0567 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF0567 PF00933 Glycosyl hydrolase family 3 N terminal domain BF0568 PF07715 TonB-dependent Receptor Plug Domain BF0568 PF00593 TonB dependent receptor BF0570 PF00884 Sulfatase BF0570 PF16385 Domain of unknown function BF0575 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF0575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF0577 PF00072 Response regulator receiver domain BF0577 PF02954 Bacterial regulatory protein, Fis family BF0577 PF00158 Sigma-54 interaction domain BF0578 PF03814 Potassium-transporting ATPase A subunit BF0580 PF02669 K+-transporting ATPase, c chain BF0582 PF02702 Osmosensitive K+ channel His kinase sensor domain BF0583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0583 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB BF0583 PF08448 PAS fold BF0583 PF00672 HAMP domain BF0583 PF00512 His Kinase A (phospho-acceptor) domain BF0586 PF00593 TonB dependent receptor BF0586 PF07715 TonB-dependent Receptor Plug Domain BF0594 PF00925 GTP cyclohydrolase II BF0594 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BF0595 PF00155 Aminotransferase class I and II BF0596 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain BF0596 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain BF0596 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain BF0596 PF08531 Alpha-L-rhamnosidase N-terminal domain BF0597 PF00037 4Fe-4S binding domain BF0598 PF04204 Homoserine O-succinyltransferase BF0599 PF12392 Collagenase BF0599 PF01136 Peptidase family U32 BF0601 PF00593 TonB dependent receptor BF0601 PF07715 TonB-dependent Receptor Plug Domain BF0602 PF00072 Response regulator receiver domain BF0602 PF00196 Bacterial regulatory proteins, luxR family BF0605 PF18073 Rubredoxin metal binding domain BF0607 PF17763 Glutaminase/Asparaginase C-terminal domain BF0607 PF00710 Asparaginase, N-terminal BF0608 PF01842 ACT domain BF0608 PF13840 ACT domain BF0608 PF00742 Homoserine dehydrogenase BF0608 PF03447 Homoserine dehydrogenase, NAD binding domain BF0608 PF00696 Amino acid kinase family BF0609 PF01676 Metalloenzyme superfamily BF0609 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase BF0610 PF00291 Pyridoxal-phosphate dependent enzyme BF0610 PF14821 Threonine synthase N terminus BF0616 PF00924 Mechanosensitive ion channel BF0616 PF05552 Conserved TM helix BF0621 PF00593 TonB dependent receptor BF0621 PF07715 TonB-dependent Receptor Plug Domain BF0622 PF07980 SusD family BF0622 PF14322 Starch-binding associating with outer membrane BF0623 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BF0623 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF0623 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF0623 PF00703 Glycosyl hydrolases family 2 BF0623 PF16355 Domain of unknown function (DUF4982) BF0625 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BF0625 PF04616 Glycosyl hydrolases family 43 BF0628 PF07715 TonB-dependent Receptor Plug Domain BF0628 PF00593 TonB dependent receptor BF0630 PF12833 Helix-turn-helix domain BF0639 PF01555 DNA methylase BF0649 PF13419 Haloacid dehalogenase-like hydrolase BF0650 PF14602 Hexapeptide repeat of succinyl-transferase BF0650 PF00132 Bacterial transferase hexapeptide (six repeats) BF0650 PF12464 Maltose acetyltransferase BF0658 PF01594 AI-2E family transporter BF0659 PF00265 Thymidine kinase BF0661 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF0664 PF01914 MarC family integral membrane protein BF0666 PF00593 TonB dependent receptor BF0666 PF07715 TonB-dependent Receptor Plug Domain BF0667 PF02899 Phage integrase, N-terminal SAM-like domain BF0667 PF00589 Phage integrase family BF0668 PF07715 TonB-dependent Receptor Plug Domain BF0668 PF00593 TonB dependent receptor BF0670 PF00593 TonB dependent receptor BF0670 PF07715 TonB-dependent Receptor Plug Domain BF0671 PF14322 Starch-binding associating with outer membrane BF0671 PF07980 SusD family BF0672 PF16360 GTP-binding GTPase Middle Region BF0672 PF13167 GTP-binding GTPase N-terminal BF0672 PF01926 50S ribosome-binding GTPase BF0674 PF11838 ERAP1-like C-terminal domain BF0674 PF01433 Peptidase family M1 domain BF0676 PF05683 Fumarase C-terminus BF0676 PF05681 Fumarate hydratase (Fumerase) BF0679 PF13520 Amino acid permease BF0683 PF00873 AcrB/AcrD/AcrF family BF0684 PF00529 HlyD membrane-fusion protein of T1SS BF0684 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF0688 PF03193 RsgA GTPase BF0688 PF16745 RsgA N-terminal domain BF0689 PF01765 Ribosome recycling factor BF0693 PF00012 Hsp70 protein BF0697 PF00696 Amino acid kinase family BF0698 PF01554 MatE BF0706 PF02021 Uncharacterised protein family UPF0102 BF0708 PF14437 MafB19-like deaminase BF0710 PF01066 CDP-alcohol phosphatidyltransferase BF0711 PF02666 Phosphatidylserine decarboxylase BF0712 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF0712 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF0712 PF14579 Helix-hairpin-helix motif BF0712 PF02811 PHP domain BF0712 PF01336 OB-fold nucleic acid binding domain BF0713 PF00085 Thioredoxin BF0721 PF07726 ATPase family associated with various cellular activities (AAA) BF0721 PF17863 AAA lid domain BF0724 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BF0725 PF00950 ABC 3 transport family BF0727 PF04389 Peptidase family M28 BF0727 PF02225 PA domain BF0732 PF07715 TonB-dependent Receptor Plug Domain BF0732 PF00593 TonB dependent receptor BF0736 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF0736 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF0736 PF02929 Beta galactosidase small chain BF0736 PF00703 Glycosyl hydrolases family 2 BF0736 PF16353 Domain of unknown function(DUF4981) BF0737 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF0739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0739 PF00512 His Kinase A (phospho-acceptor) domain BF0739 PF09308 LuxQ, periplasmic BF0739 PF00072 Response regulator receiver domain BF0740 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain BF0740 PF00728 Glycosyl hydrolase family 20, catalytic domain BF0740 PF02838 Glycosyl hydrolase family 20, domain 2 BF0740 PF03173 Putative carbohydrate binding domain BF0743 PF01761 3-dehydroquinate synthase BF0746 PF13396 Phospholipase_D-nuclease N-terminal BF0746 PF13091 PLD-like domain BF0752 PF00593 TonB dependent receptor BF0752 PF07715 TonB-dependent Receptor Plug Domain BF0754 PF07971 Glycosyl hydrolase family 92 BF0754 PF17678 Glycosyl hydrolase family 92 N-terminal domain BF0757 PF07971 Glycosyl hydrolase family 92 BF0757 PF17678 Glycosyl hydrolase family 92 N-terminal domain BF0759 PF07690 Major Facilitator Superfamily BF0761 PF01411 tRNA synthetases class II (A) BF0761 PF02272 DHHA1 domain BF0761 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF0762 PF01551 Peptidase family M23 BF0762 PF08525 Opacity-associated protein A N-terminal motif BF0762 PF01476 LysM domain BF0764 PF02824 TGS domain BF0764 PF13291 ACT domain BF0764 PF04607 Region found in RelA / SpoT proteins BF0765 PF01476 LysM domain BF0765 PF05257 CHAP domain BF0767 PF02195 ParB-like nuclease domain BF0767 PF17762 HTH domain found in ParB protein BF0768 PF13614 AAA domain BF0770 PF01975 Survival protein SurE BF0771 PF02684 Lipid-A-disaccharide synthetase BF0774 PF01434 Peptidase family M41 BF0774 PF00004 ATPase family associated with various cellular activities (AAA) BF0774 PF17862 AAA+ lid domain BF0777 PF00571 CBS domain BF0777 PF01769 Divalent cation transporter BF0777 PF03448 MgtE intracellular N domain BF0778 PF00398 Ribosomal RNA adenine dimethylase BF0780 PF01546 Peptidase family M20/M25/M40 BF0780 PF07687 Peptidase dimerisation domain BF0793 PF00924 Mechanosensitive ion channel BF0794 PF07883 Cupin domain BF0794 PF12833 Helix-turn-helix domain BF0805 PF00483 Nucleotidyl transferase BF0806 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BF0807 PF16363 GDP-mannose 4,6 dehydratase BF0808 PF01943 Polysaccharide biosynthesis protein BF0808 PF14667 Polysaccharide biosynthesis C-terminal domain BF0809 PF03559 NDP-hexose 2,3-dehydratase BF0810 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF0811 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF0813 PF00535 Glycosyl transferase family 2 BF0817 PF02397 Bacterial sugar transferase BF0820 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF0820 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF0822 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF0822 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF0826 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF0826 PF00753 Metallo-beta-lactamase superfamily BF0827 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF0830 PF08011 PD-(D/E)XK nuclease superfamily BF0830 PF09820 Predicted AAA-ATPase BF0831 PF00248 Aldo/keto reductase family BF0832 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF0832 PF00933 Glycosyl hydrolase family 3 N terminal domain BF0832 PF14310 Fibronectin type III-like domain BF0833 PF00593 TonB dependent receptor BF0833 PF07715 TonB-dependent Receptor Plug Domain BF0834 PF07980 SusD family BF0834 PF14322 Starch-binding associating with outer membrane BF0839 PF03425 Carbohydrate binding domain (family 11) BF0839 PF02156 Glycosyl hydrolase family 26 BF0841 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF0841 PF14310 Fibronectin type III-like domain BF0841 PF00933 Glycosyl hydrolase family 3 N terminal domain BF0843 PF02310 B12 binding domain BF0843 PF02607 B12 binding domain BF0846 PF02156 Glycosyl hydrolase family 26 BF0847 PF04041 beta-1,4-mannooligosaccharide phosphorylase BF0859 PF00072 Response regulator receiver domain BF0859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0859 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BF0859 PF00672 HAMP domain BF0859 PF01627 Hpt domain BF0859 PF00512 His Kinase A (phospho-acceptor) domain BF0860 PF00361 Proton-conducting membrane transporter BF0861 PF00361 Proton-conducting membrane transporter BF0862 PF00361 Proton-conducting membrane transporter BF0862 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BF0862 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF0863 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BF0864 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BF0865 PF12838 4Fe-4S dicluster domain BF0866 PF00146 NADH dehydrogenase BF0867 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BF0867 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BF0868 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BF0869 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BF0871 PF02386 Cation transport protein BF0872 PF02080 TrkA-C domain BF0872 PF02254 TrkA-N domain BF0873 PF02779 Transketolase, pyrimidine binding domain BF0873 PF02780 Transketolase, C-terminal domain BF0873 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BF0875 PF13026 Protein of unknown function (DUF3887) BF0875 PF12146 Serine aminopeptidase, S33 BF0877 PF13419 Haloacid dehalogenase-like hydrolase BF0878 PF00884 Sulfatase BF0881 PF00884 Sulfatase BF0883 PF07715 TonB-dependent Receptor Plug Domain BF0883 PF00593 TonB dependent receptor BF0884 PF07494 Two component regulator propeller BF0884 PF00072 Response regulator receiver domain BF0884 PF07495 Y_Y_Y domain BF0884 PF00512 His Kinase A (phospho-acceptor) domain BF0884 PF12833 Helix-turn-helix domain BF0884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF0885 PF07690 Major Facilitator Superfamily BF0889 PF01757 Acyltransferase family BF0890 PF00902 Sec-independent protein translocase protein (TatC) BF0891 PF02416 mttA/Hcf106 family BF0892 PF01168 Alanine racemase, N-terminal domain BF0892 PF00842 Alanine racemase, C-terminal domain BF0900 PF17200 Single Cache domain 2 BF0900 PF07730 Histidine kinase BF0905 PF00132 Bacterial transferase hexapeptide (six repeats) BF0905 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BF0906 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BF0906 PF07977 FabA-like domain BF0907 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BF0907 PF00132 Bacterial transferase hexapeptide (six repeats) BF0908 PF01966 HD domain BF0909 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BF0910 PF00472 RF-1 domain BF0910 PF03462 PCRF domain BF0911 PF02769 AIR synthase related protein, C-terminal domain BF0911 PF00586 AIR synthase related protein, N-terminal domain BF0913 PF04011 LemA family BF0916 PF08501 Shikimate dehydrogenase substrate binding domain BF0916 PF01488 Shikimate / quinate 5-dehydrogenase BF0916 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BF0917 PF01209 ubiE/COQ5 methyltransferase family BF0918 PF01259 SAICAR synthetase BF0919 PF02562 PhoH-like protein BF0921 PF15975 Flotillin BF0921 PF01145 SPFH domain / Band 7 family BF0925 PF01416 tRNA pseudouridine synthase BF0928 PF01636 Phosphotransferase enzyme family BF0929 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF0929 PF00703 Glycosyl hydrolases family 2 BF0929 PF16353 Domain of unknown function(DUF4981) BF0929 PF02929 Beta galactosidase small chain BF0929 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF0930 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF0930 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF0931 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF0937 PF17128 Domain of unknown function (DUF5107) BF0937 PF13181 Tetratricopeptide repeat BF0938 PF00083 Sugar (and other) transporter BF0939 PF02311 AraC-like ligand binding domain BF0939 PF12833 Helix-turn-helix domain BF0940 PF07691 PA14 domain BF0940 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF0940 PF00933 Glycosyl hydrolase family 3 N terminal domain BF0940 PF14310 Fibronectin type III-like domain BF0943 PF07980 SusD family BF0943 PF14322 Starch-binding associating with outer membrane BF0944 PF00593 TonB dependent receptor BF0944 PF07715 TonB-dependent Receptor Plug Domain BF0946 PF07715 TonB-dependent Receptor Plug Domain BF0946 PF00593 TonB dependent receptor BF0948 PF07715 TonB-dependent Receptor Plug Domain BF0948 PF00593 TonB dependent receptor BF0952 PF07715 TonB-dependent Receptor Plug Domain BF0952 PF00593 TonB dependent receptor BF0953 PF07980 SusD family BF0953 PF14322 Starch-binding associating with outer membrane BF0955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF0956 PF00885 6,7-dimethyl-8-ribityllumazine synthase BF0958 PF13476 AAA domain BF0962 PF01812 5-formyltetrahydrofolate cyclo-ligase family BF0963 PF03572 Peptidase family S41 BF0963 PF13180 PDZ domain BF0964 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF0966 PF01432 Peptidase family M3 BF0967 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF0967 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF0968 PF01741 Large-conductance mechanosensitive channel, MscL BF0969 PF00117 Glutamine amidotransferase class-I BF0969 PF00958 GMP synthase C terminal domain BF0969 PF02540 NAD synthase BF0971 PF07715 TonB-dependent Receptor Plug Domain BF0971 PF00593 TonB dependent receptor BF0974 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF0976 PF04055 Radical SAM superfamily BF0977 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BF0977 PF00326 Prolyl oligopeptidase family BF0982 PF04055 Radical SAM superfamily BF0982 PF16199 Radical_SAM C-terminal domain BF0983 PF00301 Rubredoxin BF0983 PF00258 Flavodoxin BF0983 PF00753 Metallo-beta-lactamase superfamily BF0984 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BF0986 PF01300 Telomere recombination BF0988 PF05970 PIF1-like helicase BF0990 PF00155 Aminotransferase class I and II BF0991 PF01053 Cys/Met metabolism PLP-dependent enzyme BF0997 PF01694 Rhomboid family BF0999 PF13439 Glycosyltransferase Family 4 BF0999 PF00534 Glycosyl transferases group 1 BF1002 PF00534 Glycosyl transferases group 1 BF1002 PF08323 Starch synthase catalytic domain BF1003 PF02569 Pantoate-beta-alanine ligase BF1004 PF02261 Aspartate decarboxylase BF1005 PF00970 Oxidoreductase FAD-binding domain BF1005 PF00175 Oxidoreductase NAD-binding domain BF1005 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BF1006 PF07690 Major Facilitator Superfamily BF1007 PF02403 Seryl-tRNA synthetase N-terminal domain BF1007 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF1009 PF01016 Ribosomal L27 protein BF1010 PF00829 Ribosomal prokaryotic L21 protein BF1014 PF13419 Haloacid dehalogenase-like hydrolase BF1015 PF00877 NlpC/P60 family BF1016 PF00005 ABC transporter BF1018 PF00675 Insulinase (Peptidase family M16) BF1018 PF05193 Peptidase M16 inactive domain BF1019 PF00793 DAHP synthetase I family BF1020 PF00781 Diacylglycerol kinase catalytic domain BF1023 PF00005 ABC transporter BF1026 PF02577 Bifunctional nuclease BF1027 PF03825 Nucleoside H+ symporter BF1030 PF17785 PUA-like domain BF1030 PF10672 S-adenosylmethionine-dependent methyltransferase BF1033 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BF1033 PF17854 FtsK alpha domain BF1033 PF09397 Ftsk gamma domain BF1033 PF01580 FtsK/SpoIIIE family BF1035 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF1036 PF00728 Glycosyl hydrolase family 20, catalytic domain BF1036 PF02838 Glycosyl hydrolase family 20, domain 2 BF1036 PF07691 PA14 domain BF1040 PF00120 Glutamine synthetase, catalytic domain BF1040 PF18318 Glutamine synthetase C-terminal domain BF1040 PF12437 Glutamine synthetase type III N terminal BF1042 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF1043 PF00575 S1 RNA binding domain BF1044 PF12706 Beta-lactamase superfamily domain BF1045 PF08281 Sigma-70, region 4 BF1045 PF04542 Sigma-70 region 2 BF1048 PF03819 MazG nucleotide pyrophosphohydrolase domain BF1048 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF1050 PF10458 Valyl tRNA synthetase tRNA binding arm BF1050 PF00133 tRNA synthetases class I (I, L, M and V) BF1050 PF08264 Anticodon-binding domain of tRNA BF1051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF1051 PF01627 Hpt domain BF1051 PF00512 His Kinase A (phospho-acceptor) domain BF1051 PF00072 Response regulator receiver domain BF1056 PF07715 TonB-dependent Receptor Plug Domain BF1056 PF00593 TonB dependent receptor BF1059 PF00149 Calcineurin-like phosphoesterase BF1062 PF07715 TonB-dependent Receptor Plug Domain BF1062 PF00593 TonB dependent receptor BF1063 PF14322 Starch-binding associating with outer membrane BF1063 PF07980 SusD family BF1064 PF16385 Domain of unknown function BF1064 PF00884 Sulfatase BF1065 PF00884 Sulfatase BF1065 PF16385 Domain of unknown function BF1068 PF02810 SEC-C motif BF1068 PF07516 SecA Wing and Scaffold domain BF1068 PF07517 SecA DEAD-like domain BF1068 PF01043 SecA preprotein cross-linking domain BF1069 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase BF1072 PF03309 Type III pantothenate kinase BF1076 PF01595 Cyclin M transmembrane N-terminal domain BF1076 PF00571 CBS domain BF1076 PF03471 Transporter associated domain BF1078 PF04055 Radical SAM superfamily BF1080 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BF1081 PF06490 Flagellar regulatory protein FleQ BF1081 PF00158 Sigma-54 interaction domain BF1081 PF02954 Bacterial regulatory protein, Fis family BF1086 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BF1088 PF01256 Carbohydrate kinase BF1090 PF13847 Methyltransferase domain BF1094 PF00483 Nucleotidyl transferase BF1099 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF1099 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF1099 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF1100 PF02350 UDP-N-acetylglucosamine 2-epimerase BF1104 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF1106 PF02719 Polysaccharide biosynthesis protein BF1106 PF08485 Polysaccharide biosynthesis protein C-terminal BF1107 PF01370 NAD dependent epimerase/dehydratase family BF1108 PF02350 UDP-N-acetylglucosamine 2-epimerase BF1110 PF02397 Bacterial sugar transferase BF1112 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF1114 PF09820 Predicted AAA-ATPase BF1114 PF08011 PD-(D/E)XK nuclease superfamily BF1117 PF00593 TonB dependent receptor BF1117 PF07715 TonB-dependent Receptor Plug Domain BF1119 PF00156 Phosphoribosyl transferase domain BF1121 PF01018 GTP1/OBG BF1121 PF01926 50S ribosome-binding GTPase BF1122 PF02578 Multi-copper polyphenol oxidoreductase laccase BF1126 PF10282 Lactonase, 7-bladed beta-propeller BF1131 PF00817 impB/mucB/samB family BF1131 PF11799 impB/mucB/samB family C-terminal domain BF1131 PF11798 IMS family HHH motif BF1134 PF03606 C4-dicarboxylate anaerobic carrier BF1137 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit BF1141 PF00849 RNA pseudouridylate synthase BF1142 PF08774 VRR-NUC domain BF1142 PF04851 Type III restriction enzyme, res subunit BF1143 PF18273 Type III R-M EcoP15I C-terminal domain BF1143 PF01555 DNA methylase BF1144 PF13802 Galactose mutarotase-like BF1144 PF01055 Glycosyl hydrolases family 31 BF1152 PF02463 RecF/RecN/SMC N terminal domain BF1154 PF13476 AAA domain BF1158 PF01555 DNA methylase BF1158 PF18273 Type III R-M EcoP15I C-terminal domain BF1168 PF02899 Phage integrase, N-terminal SAM-like domain BF1168 PF00589 Phage integrase family BF1171 PF10396 GTP-binding protein TrmE N-terminus BF1171 PF12631 MnmE helical domain BF1171 PF01926 50S ribosome-binding GTPase BF1172 PF00512 His Kinase A (phospho-acceptor) domain BF1172 PF09308 LuxQ, periplasmic BF1172 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF1172 PF00072 Response regulator receiver domain BF1173 PF13460 NAD(P)H-binding BF1174 PF02811 PHP domain BF1174 PF14579 Helix-hairpin-helix motif BF1174 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF1174 PF00929 Exonuclease BF1174 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF1175 PF01048 Phosphorylase superfamily BF1176 PF12127 SigmaW regulon antibacterial BF1179 PF01171 PP-loop family BF1182 PF02424 ApbE family BF1183 PF02659 Putative manganese efflux pump BF1186 PF00535 Glycosyl transferase family 2 BF1188 PF00113 Enolase, C-terminal TIM barrel domain BF1188 PF03952 Enolase, N-terminal domain BF1190 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF1191 PF10566 Glycoside hydrolase 97 BF1191 PF14508 Glycosyl-hydrolase 97 N-terminal BF1191 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BF1195 PF01479 S4 domain BF1196 PF01195 Peptidyl-tRNA hydrolase BF1197 PF01386 Ribosomal L25p family BF1197 PF14693 Ribosomal protein TL5, C-terminal domain BF1199 PF01029 NusB family BF1200 PF02699 Preprotein translocase subunit BF1202 PF01121 Dephospho-CoA kinase BF1205 PF07724 AAA domain (Cdc48 subfamily) BF1205 PF00004 ATPase family associated with various cellular activities (AAA) BF1205 PF17871 AAA lid domain BF1205 PF02861 Clp amino terminal domain, pathogenicity island component BF1205 PF10431 C-terminal, D2-small domain, of ClpB protein BF1207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF1207 PF03466 LysR substrate binding domain BF1208 PF03601 Conserved hypothetical protein 698 BF1211 PF04542 Sigma-70 region 2 BF1211 PF12680 SnoaL-like domain BF1211 PF08281 Sigma-70, region 4 BF1213 PF00154 recA bacterial DNA recombination protein BF1214 PF00578 AhpC/TSA family BF1215 PF03435 Saccharopine dehydrogenase NADP binding domain BF1215 PF16653 Saccharopine dehydrogenase C-terminal domain BF1219 PF01032 FecCD transport family BF1225 PF00012 Hsp70 protein BF1228 PF02899 Phage integrase, N-terminal SAM-like domain BF1228 PF00589 Phage integrase family BF1231 PF04471 Restriction endonuclease BF1234 PF01807 CHC2 zinc finger BF1234 PF08275 DNA primase catalytic core, N-terminal domain BF1235 PF01076 Plasmid recombination enzyme BF1237 PF05958 tRNA (Uracil-5-)-methyltransferase BF1237 PF01938 TRAM domain BF1240 PF00654 Voltage gated chloride channel BF1241 PF01261 Xylose isomerase-like TIM barrel BF1242 PF00291 Pyridoxal-phosphate dependent enzyme BF1243 PF02386 Cation transport protein BF1245 PF06628 Catalase-related immune-responsive BF1245 PF00199 Catalase BF1247 PF16338 Domain of unknown function (DUF4968) BF1247 PF17137 Domain of unknown function (DUF5110) BF1247 PF01055 Glycosyl hydrolases family 31 BF1249 PF04616 Glycosyl hydrolases family 43 BF1253 PF07715 TonB-dependent Receptor Plug Domain BF1253 PF00593 TonB dependent receptor BF1255 PF00149 Calcineurin-like phosphoesterase BF1255 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF1256 PF00884 Sulfatase BF1258 PF13192 Thioredoxin domain BF1258 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF1259 PF00578 AhpC/TSA family BF1259 PF10417 C-terminal domain of 1-Cys peroxiredoxin BF1265 PF03315 Serine dehydratase beta chain BF1265 PF03313 Serine dehydratase alpha chain BF1266 PF01544 CorA-like Mg2+ transporter protein BF1267 PF01713 Smr domain BF1267 PF00488 MutS domain V BF1278 PF01076 Plasmid recombination enzyme BF1279 PF08275 DNA primase catalytic core, N-terminal domain BF1279 PF01807 CHC2 zinc finger BF1279 PF08278 DNA primase DnaG DnaB-binding BF1279 PF10410 DnaB-helicase binding domain of primase BF1279 PF13662 Toprim domain BF1290 PF00107 Zinc-binding dehydrogenase BF1290 PF13823 Alcohol dehydrogenase GroES-associated BF1290 PF08240 Alcohol dehydrogenase GroES-like domain BF1291 PF00588 SpoU rRNA Methylase family BF1293 PF00884 Sulfatase BF1294 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF1294 PF00072 Response regulator receiver domain BF1294 PF09308 LuxQ, periplasmic BF1294 PF00512 His Kinase A (phospho-acceptor) domain BF1295 PF03601 Conserved hypothetical protein 698 BF1296 PF00403 Heavy-metal-associated domain BF1298 PF00691 OmpA family BF1300 PF04343 Protein of unknown function, DUF488 BF1301 PF00156 Phosphoribosyl transferase domain BF1302 PF01546 Peptidase family M20/M25/M40 BF1302 PF07687 Peptidase dimerisation domain BF1303 PF08669 Glycine cleavage T-protein C-terminal barrel domain BF1303 PF01571 Aminomethyltransferase folate-binding domain BF1307 PF02254 TrkA-N domain BF1307 PF00999 Sodium/hydrogen exchanger family BF1308 PF01810 LysE type translocator BF1310 PF04321 RmlD substrate binding domain BF1311 PF03144 Elongation factor Tu domain 2 BF1311 PF00009 Elongation factor Tu GTP binding domain BF1311 PF16658 Class II release factor RF3, C-terminal domain BF1315 PF00425 chorismate binding enzyme BF1316 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF1316 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF1318 PF00378 Enoyl-CoA hydratase/isomerase BF1319 PF13378 Enolase C-terminal domain-like BF1319 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF1323 PF10566 Glycoside hydrolase 97 BF1323 PF14508 Glycosyl-hydrolase 97 N-terminal BF1323 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BF1326 PF07715 TonB-dependent Receptor Plug Domain BF1326 PF00593 TonB dependent receptor BF1332 PF04041 beta-1,4-mannooligosaccharide phosphorylase BF1333 PF00210 Ferritin-like domain BF1334 PF03466 LysR substrate binding domain BF1334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF1338 PF04055 Radical SAM superfamily BF1339 PF02901 Pyruvate formate lyase-like BF1339 PF01228 Glycine radical BF1340 PF02899 Phage integrase, N-terminal SAM-like domain BF1340 PF00589 Phage integrase family BF1349 PF00145 C-5 cytosine-specific DNA methylase BF1373 PF01131 DNA topoisomerase BF1373 PF01751 Toprim domain BF1385 PF12796 Ankyrin repeats (3 copies) BF1390 PF13495 Phage integrase, N-terminal SAM-like domain BF1390 PF00589 Phage integrase family BF1391 PF08362 YcdC-like protein, C-terminal region BF1391 PF00440 Bacterial regulatory proteins, tetR family BF1399 PF01595 Cyclin M transmembrane N-terminal domain BF1399 PF00571 CBS domain BF1399 PF03471 Transporter associated domain BF1400 PF01435 Peptidase family M48 BF1406 PF01053 Cys/Met metabolism PLP-dependent enzyme BF1408 PF00072 Response regulator receiver domain BF1408 PF00196 Bacterial regulatory proteins, luxR family BF1410 PF03553 Na+/H+ antiporter family BF1413 PF07690 Major Facilitator Superfamily BF1414 PF06832 Penicillin-Binding Protein C-terminus Family BF1414 PF00905 Penicillin binding protein transpeptidase domain BF1414 PF00912 Transglycosylase BF1415 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BF1415 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BF1415 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BF1415 PF07703 Alpha-2-macroglobulin bait region domain BF1415 PF00207 Alpha-2-macroglobulin family BF1415 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BF1415 PF17962 Bacterial macroglobulin domain 6 BF1415 PF01835 MG2 domain BF1415 PF07678 A-macroglobulin TED domain BF1416 PF01171 PP-loop family BF1417 PF07670 Nucleoside recognition BF1417 PF02421 Ferrous iron transport protein B BF1417 PF17910 FeoB cytosolic helical domain BF1417 PF07664 Ferrous iron transport protein B C terminus BF1417 PF04023 FeoA domain BF1430 PF02719 Polysaccharide biosynthesis protein BF1431 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF1433 PF00550 Phosphopantetheine attachment site BF1433 PF13193 AMP-binding enzyme C-terminal domain BF1433 PF00668 Condensation domain BF1433 PF00975 Thioesterase domain BF1433 PF00501 AMP-binding enzyme BF1436 PF00483 Nucleotidyl transferase BF1441 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF1441 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF1441 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF1442 PF00535 Glycosyl transferase family 2 BF1443 PF00535 Glycosyl transferase family 2 BF1444 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF1445 PF02397 Bacterial sugar transferase BF1446 PF00578 AhpC/TSA family BF1447 PF02080 TrkA-C domain BF1447 PF03600 Citrate transporter BF1450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF1453 PF01243 Pyridoxamine 5'-phosphate oxidase BF1453 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BF1454 PF17954 Quercetinase C-terminal cupin domain BF1454 PF02678 Pirin BF1459 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF1459 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF1463 PF08281 Sigma-70, region 4 BF1463 PF04542 Sigma-70 region 2 BF1465 PF06508 Queuosine biosynthesis protein QueC BF1466 PF14489 QueF-like protein BF1467 PF02590 Predicted SPOUT methyltransferase BF1469 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BF1469 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BF1470 PF08281 Sigma-70, region 4 BF1470 PF04542 Sigma-70 region 2 BF1474 PF03060 Nitronate monooxygenase BF1475 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF1475 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF1477 PF03577 Peptidase family C69 BF1478 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF1478 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF1478 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF1478 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF1482 PF07715 TonB-dependent Receptor Plug Domain BF1482 PF00593 TonB dependent receptor BF1485 PF17801 Alpha galactosidase C-terminal beta sandwich domain BF1485 PF16499 Alpha galactosidase A BF1487 PF02329 Histidine carboxylase PI chain BF1489 PF00293 NUDIX domain BF1489 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BF1489 PF09297 NADH pyrophosphatase zinc ribbon domain BF1490 PF12848 ABC transporter BF1490 PF00005 ABC transporter BF1491 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF1491 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF1492 PF04224 Protein of unknown function, DUF417 BF1493 PF02311 AraC-like ligand binding domain BF1493 PF12833 Helix-turn-helix domain BF1494 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF1495 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BF1495 PF01476 LysM domain BF1498 PF12704 MacB-like periplasmic core domain BF1498 PF02687 FtsX-like permease family BF1500 PF12704 MacB-like periplasmic core domain BF1500 PF02687 FtsX-like permease family BF1502 PF02687 FtsX-like permease family BF1502 PF00005 ABC transporter BF1502 PF12704 MacB-like periplasmic core domain BF1504 PF12833 Helix-turn-helix domain BF1505 PF00005 ABC transporter BF1506 PF12704 MacB-like periplasmic core domain BF1506 PF00005 ABC transporter BF1506 PF02687 FtsX-like permease family BF1508 PF00005 ABC transporter BF1512 PF13426 PAS domain BF1512 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF1512 PF00512 His Kinase A (phospho-acceptor) domain BF1512 PF00989 PAS fold BF1512 PF13188 PAS domain BF1515 PF02954 Bacterial regulatory protein, Fis family BF1515 PF00158 Sigma-54 interaction domain BF1515 PF00072 Response regulator receiver domain BF1516 PF00512 His Kinase A (phospho-acceptor) domain BF1516 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF1517 PF00155 Aminotransferase class I and II BF1518 PF06826 Predicted Permease Membrane Region BF1534 PF00483 Nucleotidyl transferase BF1536 PF16363 GDP-mannose 4,6 dehydratase BF1537 PF16363 GDP-mannose 4,6 dehydratase BF1539 PF00248 Aldo/keto reductase family BF1541 PF01757 Acyltransferase family BF1543 PF00535 Glycosyl transferase family 2 BF1546 PF00535 Glycosyl transferase family 2 BF1547 PF00534 Glycosyl transferases group 1 BF1548 PF00534 Glycosyl transferases group 1 BF1548 PF13439 Glycosyltransferase Family 4 BF1550 PF01370 NAD dependent epimerase/dehydratase family BF1551 PF00953 Glycosyl transferase family 4 BF1552 PF10150 Ribonuclease E/G family BF1552 PF00575 S1 RNA binding domain BF1553 PF00216 Bacterial DNA-binding protein BF1554 PF14815 NUDIX domain BF1554 PF00730 HhH-GPD superfamily base excision DNA repair protein BF1554 PF00633 Helix-hairpin-helix motif BF1555 PF00884 Sulfatase BF1555 PF16385 Domain of unknown function BF1556 PF00436 Single-strand binding protein family BF1557 PF03471 Transporter associated domain BF1557 PF00571 CBS domain BF1569 PF07715 TonB-dependent Receptor Plug Domain BF1569 PF00593 TonB dependent receptor BF1575 PF13426 PAS domain BF1575 PF00672 HAMP domain BF1575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF1575 PF00512 His Kinase A (phospho-acceptor) domain BF1576 PF00486 Transcriptional regulatory protein, C terminal BF1576 PF00072 Response regulator receiver domain BF1582 PF12848 ABC transporter BF1582 PF16326 ABC transporter C-terminal domain BF1582 PF00005 ABC transporter BF1584 PF00722 Glycosyl hydrolases family 16 BF1584 PF02018 Carbohydrate binding domain BF1585 PF02278 Polysaccharide lyase family 8, super-sandwich domain BF1585 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain BF1585 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain BF1588 PF00155 Aminotransferase class I and II BF1589 PF02687 FtsX-like permease family BF1589 PF12704 MacB-like periplasmic core domain BF1590 PF00535 Glycosyl transferase family 2 BF1591 PF01594 AI-2E family transporter BF1592 PF00512 His Kinase A (phospho-acceptor) domain BF1592 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF1593 PF00072 Response regulator receiver domain BF1593 PF00158 Sigma-54 interaction domain BF1593 PF02954 Bacterial regulatory protein, Fis family BF1595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF1595 PF00529 HlyD membrane-fusion protein of T1SS BF1597 PF12704 MacB-like periplasmic core domain BF1597 PF02687 FtsX-like permease family BF1597 PF00005 ABC transporter BF1598 PF02687 FtsX-like permease family BF1598 PF12704 MacB-like periplasmic core domain BF1599 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF1601 PF08241 Methyltransferase domain BF1601 PF04301 Protein of unknown function (DUF452) BF1602 PF00155 Aminotransferase class I and II BF1603 PF06968 Biotin and Thiamin Synthesis associated domain BF1603 PF00202 Aminotransferase class-III BF1603 PF04055 Radical SAM superfamily BF1605 PF07715 TonB-dependent Receptor Plug Domain BF1605 PF00593 TonB dependent receptor BF1608 PF02652 L-lactate permease BF1609 PF05736 OprF membrane domain BF1609 PF00691 OmpA family BF1611 PF01039 Carboxyl transferase domain BF1612 PF00289 Biotin carboxylase, N-terminal domain BF1612 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF1612 PF02785 Biotin carboxylase C-terminal domain BF1613 PF00364 Biotin-requiring enzyme BF1614 PF01979 Amidohydrolase family BF1618 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF1618 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF1619 PF03099 Biotin/lipoate A/B protein ligase family BF1619 PF10437 Bacterial lipoate protein ligase C-terminus BF1621 PF00364 Biotin-requiring enzyme BF1621 PF02817 e3 binding domain BF1621 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF1622 PF02780 Transketolase, C-terminal domain BF1622 PF02779 Transketolase, pyrimidine binding domain BF1623 PF00258 Flavodoxin BF1635 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF1639 PF04542 Sigma-70 region 2 BF1639 PF08281 Sigma-70, region 4 BF1639 PF12680 SnoaL-like domain BF1641 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF1641 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF1643 PF01464 Transglycosylase SLT domain BF1643 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF1651 PF02502 Ribose/Galactose Isomerase BF1652 PF02780 Transketolase, C-terminal domain BF1652 PF02779 Transketolase, pyrimidine binding domain BF1652 PF00456 Transketolase, thiamine diphosphate binding domain BF1653 PF08544 GHMP kinases C terminal BF1653 PF10509 Galactokinase galactose-binding signature BF1653 PF00288 GHMP kinases N terminal domain BF1655 PF01263 Aldose 1-epimerase BF1656 PF01238 Phosphomannose isomerase type I BF1660 PF00270 DEAD/DEAH box helicase BF1660 PF00271 Helicase conserved C-terminal domain BF1661 PF00106 short chain dehydrogenase BF1664 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF1664 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF1664 PF00703 Glycosyl hydrolases family 2 BF1664 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BF1664 PF16355 Domain of unknown function (DUF4982) BF1665 PF00459 Inositol monophosphatase family BF1666 PF03600 Citrate transporter BF1666 PF02080 TrkA-C domain BF1668 PF01507 Phosphoadenosine phosphosulfate reductase family BF1669 PF00009 Elongation factor Tu GTP binding domain BF1677 PF02899 Phage integrase, N-terminal SAM-like domain BF1677 PF00589 Phage integrase family BF1683 PF03652 Holliday junction resolvase BF1684 PF01327 Polypeptide deformylase BF1687 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF1687 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF1687 PF02824 TGS domain BF1687 PF03129 Anticodon binding domain BF1688 PF00707 Translation initiation factor IF-3, C-terminal domain BF1688 PF05198 Translation initiation factor IF-3, N-terminal domain BF1689 PF01632 Ribosomal protein L35 BF1690 PF00453 Ribosomal protein L20 BF1693 PF00501 AMP-binding enzyme BF1693 PF14535 AMP-binding enzyme C-terminal domain BF1696 PF02618 YceG-like family BF1700 PF02719 Polysaccharide biosynthesis protein BF1705 PF01325 Iron dependent repressor, N-terminal DNA binding domain BF1705 PF00480 ROK family BF1706 PF00701 Dihydrodipicolinate synthetase family BF1708 PF07690 Major Facilitator Superfamily BF1709 PF04074 YhcH/YjgK/YiaL BF1710 PF07715 TonB-dependent Receptor Plug Domain BF1710 PF00593 TonB dependent receptor BF1711 PF07980 SusD family BF1711 PF14322 Starch-binding associating with outer membrane BF1713 PF07715 TonB-dependent Receptor Plug Domain BF1713 PF00593 TonB dependent receptor BF1714 PF07980 SusD family BF1714 PF14322 Starch-binding associating with outer membrane BF1718 PF07715 TonB-dependent Receptor Plug Domain BF1718 PF00593 TonB dependent receptor BF1719 PF07980 SusD family BF1719 PF14322 Starch-binding associating with outer membrane BF1722 PF07715 TonB-dependent Receptor Plug Domain BF1722 PF00593 TonB dependent receptor BF1723 PF14322 Starch-binding associating with outer membrane BF1723 PF07980 SusD family BF1724 PF07980 SusD family BF1724 PF14322 Starch-binding associating with outer membrane BF1725 PF00593 TonB dependent receptor BF1725 PF07715 TonB-dependent Receptor Plug Domain BF1726 PF07715 TonB-dependent Receptor Plug Domain BF1726 PF00593 TonB dependent receptor BF1729 PF13859 BNR repeat-like domain BF1729 PF14873 N-terminal domain of BNR-repeat neuraminidase BF1730 PF07691 PA14 domain BF1730 PF00728 Glycosyl hydrolase family 20, catalytic domain BF1730 PF02838 Glycosyl hydrolase family 20, domain 2 BF1734 PF07691 PA14 domain BF1734 PF00728 Glycosyl hydrolase family 20, catalytic domain BF1734 PF02838 Glycosyl hydrolase family 20, domain 2 BF1736 PF00728 Glycosyl hydrolase family 20, catalytic domain BF1736 PF02838 Glycosyl hydrolase family 20, domain 2 BF1736 PF07691 PA14 domain BF1737 PF17678 Glycosyl hydrolase family 92 N-terminal domain BF1737 PF07971 Glycosyl hydrolase family 92 BF1738 PF16355 Domain of unknown function (DUF4982) BF1738 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BF1738 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF1738 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF1738 PF00703 Glycosyl hydrolases family 2 BF1739 PF00593 TonB dependent receptor BF1739 PF07715 TonB-dependent Receptor Plug Domain BF1740 PF14322 Starch-binding associating with outer membrane BF1740 PF07980 SusD family BF1741 PF02929 Beta galactosidase small chain BF1741 PF16353 Domain of unknown function(DUF4981) BF1741 PF00703 Glycosyl hydrolases family 2 BF1741 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF1741 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF1742 PF00226 DnaJ domain BF1742 PF00684 DnaJ central domain BF1742 PF01556 DnaJ C terminal domain BF1743 PF01025 GrpE BF1744 PF12848 ABC transporter BF1744 PF00005 ABC transporter BF1745 PF04542 Sigma-70 region 2 BF1745 PF08281 Sigma-70, region 4 BF1750 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BF1751 PF00480 ROK family BF1752 PF07715 TonB-dependent Receptor Plug Domain BF1752 PF00593 TonB dependent receptor BF1754 PF07971 Glycosyl hydrolase family 92 BF1754 PF17678 Glycosyl hydrolase family 92 N-terminal domain BF1755 PF03372 Endonuclease/Exonuclease/phosphatase family BF1756 PF00245 Alkaline phosphatase BF1760 PF12833 Helix-turn-helix domain BF1761 PF17674 HHH domain BF1761 PF00575 S1 RNA binding domain BF1761 PF16921 Tex protein YqgF-like domain BF1761 PF09371 Tex-like protein N-terminal domain BF1776 PF02463 RecF/RecN/SMC N terminal domain BF1783 PF00691 OmpA family BF1806 PF16921 Tex protein YqgF-like domain BF1806 PF00575 S1 RNA binding domain BF1806 PF09371 Tex-like protein N-terminal domain BF1806 PF17674 HHH domain BF1807 PF00512 His Kinase A (phospho-acceptor) domain BF1807 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF1808 PF02872 5'-nucleotidase, C-terminal domain BF1808 PF00149 Calcineurin-like phosphoesterase BF1809 PF13185 GAF domain BF1811 PF07715 TonB-dependent Receptor Plug Domain BF1811 PF00593 TonB dependent receptor BF1814 PF01554 MatE BF1817 PF01554 MatE BF1818 PF02080 TrkA-C domain BF1818 PF06826 Predicted Permease Membrane Region BF1819 PF06874 Firmicute fructose-1,6-bisphosphatase BF1821 PF00501 AMP-binding enzyme BF1821 PF13193 AMP-binding enzyme C-terminal domain BF1822 PF01370 NAD dependent epimerase/dehydratase family BF1823 PF16363 GDP-mannose 4,6 dehydratase BF1831 PF12804 MobA-like NTP transferase domain BF1834 PF00266 Aminotransferase class-V BF1838 PF01370 NAD dependent epimerase/dehydratase family BF1839 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF1839 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF1839 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF1840 PF00535 Glycosyl transferase family 2 BF1841 PF00535 Glycosyl transferase family 2 BF1844 PF08485 Polysaccharide biosynthesis protein C-terminal BF1844 PF02719 Polysaccharide biosynthesis protein BF1844.1 PF02350 UDP-N-acetylglucosamine 2-epimerase BF1845 PF04321 RmlD substrate binding domain BF1847 PF01370 NAD dependent epimerase/dehydratase family BF1848 PF00953 Glycosyl transferase family 4 BF1852 PF00375 Sodium:dicarboxylate symporter family BF1853 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF1853 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF1854 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF1854 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF1855 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BF1858 PF00395 S-layer homology domain BF1858 PF06452 Carbohydrate family 9 binding domain-like BF1858 PF02018 Carbohydrate binding domain BF1858 PF00331 Glycosyl hydrolase family 10 BF1859 PF03253 Urea transporter BF1862 PF13438 Domain of unknown function (DUF4113) BF1862 PF00817 impB/mucB/samB family BF1862 PF11799 impB/mucB/samB family C-terminal domain BF1863 PF00717 Peptidase S24-like BF1868 PF00072 Response regulator receiver domain BF1868 PF04397 LytTr DNA-binding domain BF1870 PF00005 ABC transporter BF1870 PF02687 FtsX-like permease family BF1870 PF12704 MacB-like periplasmic core domain BF1871 PF00005 ABC transporter BF1872 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF1875 PF01654 Cytochrome bd terminal oxidase subunit I BF1877 PF05406 WGR domain BF1880 PF04055 Radical SAM superfamily BF1880 PF06969 HemN C-terminal domain BF1882 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF1882 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF1883 PF00004 ATPase family associated with various cellular activities (AAA) BF1883 PF16193 AAA C-terminal domain BF1883 PF12002 MgsA AAA+ ATPase C terminal BF1884 PF16355 Domain of unknown function (DUF4982) BF1884 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BF1884 PF00703 Glycosyl hydrolases family 2 BF1884 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF1884 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF1886 PF02350 UDP-N-acetylglucosamine 2-epimerase BF1887 PF03458 UPF0126 domain BF1889 PF01435 Peptidase family M48 BF1890 PF04011 LemA family BF1891 PF08281 Sigma-70, region 4 BF1891 PF04542 Sigma-70 region 2 BF1894 PF00593 TonB dependent receptor BF1894 PF07715 TonB-dependent Receptor Plug Domain BF1896 PF00912 Transglycosylase BF1897 PF00691 OmpA family BF1897 PF01389 OmpA-like transmembrane domain BF1898 PF01554 MatE BF1899 PF00892 EamA-like transporter family BF1908 PF00132 Bacterial transferase hexapeptide (six repeats) BF1908 PF14602 Hexapeptide repeat of succinyl-transferase BF1908 PF12464 Maltose acetyltransferase BF1909 PF17820 PDZ domain BF1909 PF13180 PDZ domain BF1913 PF01593 Flavin containing amine oxidoreductase BF1914 PF04055 Radical SAM superfamily BF1914 PF06969 HemN C-terminal domain BF1915 PF07690 Major Facilitator Superfamily BF1916 PF00593 TonB dependent receptor BF1916 PF07715 TonB-dependent Receptor Plug Domain BF1923 PF07715 TonB-dependent Receptor Plug Domain BF1923 PF00593 TonB dependent receptor BF1924 PF07715 TonB-dependent Receptor Plug Domain BF1924 PF00593 TonB dependent receptor BF1932 PF02563 Polysaccharide biosynthesis/export protein BF1932 PF10531 SLBB domain BF1944 PF04717 Type VI secretion system, phage-baseplate injector BF1954 PF00004 ATPase family associated with various cellular activities (AAA) BF1954 PF10431 C-terminal, D2-small domain, of ClpB protein BF1954 PF02861 Clp amino terminal domain, pathogenicity island component BF1954 PF17871 AAA lid domain BF1954 PF07724 AAA domain (Cdc48 subfamily) BF1960 PF00155 Aminotransferase class I and II BF1966 PF00589 Phage integrase family BF1966 PF13495 Phage integrase, N-terminal SAM-like domain BF1977 PF06250 YhcG PDDEXK nuclease domain BF1977 PF17761 DUF1016 N-terminal domain BF1980 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) BF1980 PF08463 EcoEI R protein C-terminal BF1980 PF04851 Type III restriction enzyme, res subunit BF1980 PF00271 Helicase conserved C-terminal domain BF1987 PF00589 Phage integrase family BF1987 PF14659 Phage integrase, N-terminal SAM-like domain BF1988 PF00589 Phage integrase family BF1988 PF02899 Phage integrase, N-terminal SAM-like domain BF1990 PF12848 ABC transporter BF1990 PF00005 ABC transporter BF1994 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF1994 PF00512 His Kinase A (phospho-acceptor) domain BF1994 PF00072 Response regulator receiver domain BF1994 PF01627 Hpt domain BF1994 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF1997 PF00535 Glycosyl transferase family 2 BF1998 PF13439 Glycosyltransferase Family 4 BF1998 PF00534 Glycosyl transferases group 1 BF1999 PF08759 Glycosyltransferase GT-D fold BF1999 PF01501 Glycosyl transferase family 8 BF2001 PF01943 Polysaccharide biosynthesis protein BF2002 PF13439 Glycosyltransferase Family 4 BF2002 PF00534 Glycosyl transferases group 1 BF2005 PF00535 Glycosyl transferase family 2 BF2010 PF03051 Peptidase C1-like family BF2011 PF11973 NQRA C-terminal domain BF2011 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) BF2012 PF03116 NQR2, RnfD, RnfE family BF2013 PF04205 FMN-binding domain BF2014 PF02508 Rnf-Nqr subunit, membrane protein BF2015 PF02508 Rnf-Nqr subunit, membrane protein BF2016 PF00970 Oxidoreductase FAD-binding domain BF2016 PF00175 Oxidoreductase NAD-binding domain BF2016 PF00111 2Fe-2S iron-sulfur cluster binding domain BF2017 PF00271 Helicase conserved C-terminal domain BF2017 PF03880 DbpA RNA binding domain BF2017 PF00270 DEAD/DEAH box helicase BF2018 PF00266 Aminotransferase class-V BF2019 PF01842 ACT domain BF2019 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF2019 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF2021 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BF2021 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF2022 PF09186 Domain of unknown function (DUF1949) BF2022 PF01205 Uncharacterized protein family UPF0029 BF2024 PF00881 Nitroreductase family BF2025 PF02347 Glycine cleavage system P-protein BF2026 PF00753 Metallo-beta-lactamase superfamily BF2027 PF02527 rRNA small subunit methyltransferase G BF2032 PF00403 Heavy-metal-associated domain BF2034 PF03099 Biotin/lipoate A/B protein ligase family BF2040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2040 PF00512 His Kinase A (phospho-acceptor) domain BF2040 PF00989 PAS fold BF2041 PF00072 Response regulator receiver domain BF2041 PF02954 Bacterial regulatory protein, Fis family BF2041 PF00158 Sigma-54 interaction domain BF2046 PF00005 ABC transporter BF2048 PF01926 50S ribosome-binding GTPase BF2049 PF00474 Sodium:solute symporter family BF2050 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BF2053 PF02132 RecR protein BF2053 PF13662 Toprim domain BF2056 PF02622 Uncharacterized ACR, COG1678 BF2069 PF00248 Aldo/keto reductase family BF2073 PF00248 Aldo/keto reductase family BF2075 PF00248 Aldo/keto reductase family BF2077 PF00248 Aldo/keto reductase family BF2080 PF01554 MatE BF2081 PF00155 Aminotransferase class I and II BF2084 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF2085 PF04235 Protein of unknown function (DUF418) BF2086 PF00248 Aldo/keto reductase family BF2092 PF00873 AcrB/AcrD/AcrF family BF2095 PF13180 PDZ domain BF2095 PF03572 Peptidase family S41 BF2095 PF01471 Putative peptidoglycan binding domain BF2102 PF00593 TonB dependent receptor BF2102 PF07715 TonB-dependent Receptor Plug Domain BF2109 PF00440 Bacterial regulatory proteins, tetR family BF2111 PF04954 Siderophore-interacting protein BF2111 PF00005 ABC transporter BF2111 PF08021 Siderophore-interacting FAD-binding domain BF2111 PF00664 ABC transporter transmembrane region BF2112 PF00664 ABC transporter transmembrane region BF2112 PF00005 ABC transporter BF2114 PF00512 His Kinase A (phospho-acceptor) domain BF2114 PF00072 Response regulator receiver domain BF2114 PF01627 Hpt domain BF2114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2114 PF00672 HAMP domain BF2114 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BF2117 PF01037 Lrp/AsnC ligand binding domain BF2121 PF11922 Domain of unknown function (DUF3440) BF2121 PF01507 Phosphoadenosine phosphosulfate reductase family BF2122 PF02195 ParB-like nuclease domain BF2132 PF01370 NAD dependent epimerase/dehydratase family BF2133 PF00072 Response regulator receiver domain BF2133 PF00486 Transcriptional regulatory protein, C terminal BF2135 PF12705 PD-(D/E)XK nuclease superfamily BF2135 PF00580 UvrD/REP helicase N-terminal domain BF2135 PF13361 UvrD-like helicase C-terminal domain BF2136 PF07691 PA14 domain BF2136 PF02838 Glycosyl hydrolase family 20, domain 2 BF2136 PF00728 Glycosyl hydrolase family 20, catalytic domain BF2138 PF00593 TonB dependent receptor BF2138 PF07715 TonB-dependent Receptor Plug Domain BF2140 PF05762 VWA domain containing CoxE-like protein BF2141 PF17868 AAA lid domain BF2141 PF07728 AAA domain (dynein-related subfamily) BF2141 PF12592 Protein of unknown function (DUF3763) BF2144 PF00501 AMP-binding enzyme BF2145 PF03471 Transporter associated domain BF2145 PF02080 TrkA-C domain BF2145 PF00999 Sodium/hydrogen exchanger family BF2146 PF00860 Permease family BF2147 PF03063 Prismane/CO dehydrogenase family BF2149 PF00512 His Kinase A (phospho-acceptor) domain BF2149 PF00989 PAS fold BF2149 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2150 PF02954 Bacterial regulatory protein, Fis family BF2150 PF00072 Response regulator receiver domain BF2150 PF00158 Sigma-54 interaction domain BF2154 PF00005 ABC transporter BF2154 PF12704 MacB-like periplasmic core domain BF2154 PF02687 FtsX-like permease family BF2155 PF12704 MacB-like periplasmic core domain BF2155 PF00005 ABC transporter BF2155 PF02687 FtsX-like permease family BF2156 PF00005 ABC transporter BF2156 PF02687 FtsX-like permease family BF2156 PF12704 MacB-like periplasmic core domain BF2157 PF00005 ABC transporter BF2157 PF12704 MacB-like periplasmic core domain BF2157 PF02687 FtsX-like permease family BF2159 PF01554 MatE BF2160 PF13419 Haloacid dehalogenase-like hydrolase BF2161 PF01180 Dihydroorotate dehydrogenase BF2163 PF02548 Ketopantoate hydroxymethyltransferase BF2165 PF01219 Prokaryotic diacylglycerol kinase BF2166 PF02824 TGS domain BF2166 PF13291 ACT domain BF2166 PF04607 Region found in RelA / SpoT proteins BF2170 PF02222 ATP-grasp domain BF2171 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF2171 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF2172 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BF2174 PF00119 ATP synthase A chain BF2175 PF00137 ATP synthase subunit C BF2176 PF00430 ATP synthase B/B' CF(0) BF2177 PF00213 ATP synthase delta (OSCP) subunit BF2178 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF2178 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF2178 PF00306 ATP synthase alpha/beta chain, C terminal domain BF2179 PF00231 ATP synthase BF2180 PF05970 PIF1-like helicase BF2180 PF14493 Helix-turn-helix domain BF2181 PF00085 Thioredoxin BF2183 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF2183 PF00529 HlyD membrane-fusion protein of T1SS BF2184 PF00873 AcrB/AcrD/AcrF family BF2185 PF00486 Transcriptional regulatory protein, C terminal BF2185 PF00072 Response regulator receiver domain BF2186 PF18719 ArlS sensor domain BF2186 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2186 PF00512 His Kinase A (phospho-acceptor) domain BF2191 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF2193 PF01032 FecCD transport family BF2194 PF00005 ABC transporter BF2195 PF04321 RmlD substrate binding domain BF2198 PF00072 Response regulator receiver domain BF2198 PF00486 Transcriptional regulatory protein, C terminal BF2199 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2199 PF00512 His Kinase A (phospho-acceptor) domain BF2201 PF00512 His Kinase A (phospho-acceptor) domain BF2201 PF13188 PAS domain BF2201 PF00989 PAS fold BF2201 PF13426 PAS domain BF2201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2202 PF01268 Formate--tetrahydrofolate ligase BF2204 PF00464 Serine hydroxymethyltransferase BF2206 PF01613 Flavin reductase like domain BF2207 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BF2207 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BF2208 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF2208 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF2210 PF03956 Lysine exporter LysO BF2216 PF04261 Dyp-type peroxidase family BF2219 PF07715 TonB-dependent Receptor Plug Domain BF2219 PF00593 TonB dependent receptor BF2223 PF02348 Cytidylyltransferase BF2227 PF17092 Penicillin-binding protein OB-like domain BF2227 PF00905 Penicillin binding protein transpeptidase domain BF2227 PF00912 Transglycosylase BF2231 PF14572 Phosphoribosyl synthetase-associated domain BF2231 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BF2232 PF07689 KaiB domain BF2232 PF00512 His Kinase A (phospho-acceptor) domain BF2232 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2239 PF00425 chorismate binding enzyme BF2240 PF01063 Amino-transferase class IV BF2243 PF02806 Alpha amylase, C-terminal all-beta domain BF2243 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF2243 PF00128 Alpha amylase, catalytic domain BF2244 PF00128 Alpha amylase, catalytic domain BF2245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF2245 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF2246 PF01734 Patatin-like phospholipase BF2248 PF07690 Major Facilitator Superfamily BF2249 PF03951 Glutamine synthetase, beta-Grasp domain BF2249 PF00120 Glutamine synthetase, catalytic domain BF2251 PF00106 short chain dehydrogenase BF2252 PF01569 PAP2 superfamily BF2256 PF02629 CoA binding domain BF2256 PF00549 CoA-ligase BF2257 PF00549 CoA-ligase BF2257 PF08442 ATP-grasp domain BF2258 PF00698 Acyl transferase domain BF2259 PF08543 Phosphomethylpyrimidine kinase BF2261 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF2261 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF2262 PF01261 Xylose isomerase-like TIM barrel BF2263 PF00083 Sugar (and other) transporter BF2265 PF00583 Acetyltransferase (GNAT) family BF2265 PF00795 Carbon-nitrogen hydrolase BF2266 PF00578 AhpC/TSA family BF2266 PF10417 C-terminal domain of 1-Cys peroxiredoxin BF2267 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) BF2268 PF14376 Haem-binding domain BF2268 PF00034 Cytochrome c BF2268 PF03150 Di-haem cytochrome c peroxidase BF2269 PF01578 Cytochrome C assembly protein BF2274 PF10951 Protein of unknown function (DUF2776) BF2275 PF08264 Anticodon-binding domain of tRNA BF2275 PF00133 tRNA synthetases class I (I, L, M and V) BF2277 PF01252 Signal peptidase (SPase) II BF2280 PF00588 SpoU rRNA Methylase family BF2280 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF2290 PF07690 Major Facilitator Superfamily BF2291 PF00753 Metallo-beta-lactamase superfamily BF2293 PF02614 Glucuronate isomerase BF2296 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BF2297 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF2297 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF2297 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF2299 PF00270 DEAD/DEAH box helicase BF2299 PF00271 Helicase conserved C-terminal domain BF2303 PF01702 Queuine tRNA-ribosyltransferase BF2304 PF00004 ATPase family associated with various cellular activities (AAA) BF2304 PF05362 Lon protease (S16) C-terminal proteolytic domain BF2304 PF02190 ATP-dependent protease La (LON) substrate-binding domain BF2305 PF05175 Methyltransferase small domain BF2364 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2364 PF00512 His Kinase A (phospho-acceptor) domain BF2364 PF07689 KaiB domain BF2365 PF00072 Response regulator receiver domain BF2365 PF02954 Bacterial regulatory protein, Fis family BF2365 PF00158 Sigma-54 interaction domain BF2375 PF00005 ABC transporter BF2375 PF02687 FtsX-like permease family BF2375 PF12704 MacB-like periplasmic core domain BF2377 PF00155 Aminotransferase class I and II BF2378 PF00781 Diacylglycerol kinase catalytic domain BF2379 PF00152 tRNA synthetases class II (D, K and N) BF2379 PF02938 GAD domain BF2379 PF01336 OB-fold nucleic acid binding domain BF2381 PF00795 Carbon-nitrogen hydrolase BF2382 PF04371 Porphyromonas-type peptidyl-arginine deiminase BF2384 PF02687 FtsX-like permease family BF2384 PF00005 ABC transporter BF2384 PF12704 MacB-like periplasmic core domain BF2389 PF01784 NIF3 (NGG1p interacting factor 3) BF2391 PF02321 Outer membrane efflux protein BF2392 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF2393 PF00873 AcrB/AcrD/AcrF family BF2395 PF01048 Phosphorylase superfamily BF2395 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus BF2399 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BF2399 PF00175 Oxidoreductase NAD-binding domain BF2400 PF01180 Dihydroorotate dehydrogenase BF2402 PF01746 tRNA (Guanine-1)-methyltransferase BF2403 PF00533 BRCA1 C Terminus (BRCT) domain BF2403 PF03120 NAD-dependent DNA ligase OB-fold domain BF2403 PF12826 Helix-hairpin-helix motif BF2403 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BF2403 PF01653 NAD-dependent DNA ligase adenylation domain BF2404 PF00701 Dihydrodipicolinate synthetase family BF2405 PF00302 Chloramphenicol acetyltransferase BF2406 PF04237 YjbR BF2407 PF03781 Sulfatase-modifying factor enzyme 1 BF2408 PF01734 Patatin-like phospholipase BF2408 PF00027 Cyclic nucleotide-binding domain BF2409 PF00183 Hsp90 protein BF2410 PF00004 ATPase family associated with various cellular activities (AAA) BF2410 PF07724 AAA domain (Cdc48 subfamily) BF2410 PF17871 AAA lid domain BF2410 PF02861 Clp amino terminal domain, pathogenicity island component BF2410 PF10431 C-terminal, D2-small domain, of ClpB protein BF2411 PF03989 DNA gyrase C-terminal domain, beta-propeller BF2411 PF00521 DNA gyrase/topoisomerase IV, subunit A BF2418 PF07584 Aerotolerance regulator N-terminal BF2418 PF13519 von Willebrand factor type A domain BF2419 PF13519 von Willebrand factor type A domain BF2421 PF01882 Protein of unknown function DUF58 BF2422 PF07726 ATPase family associated with various cellular activities (AAA) BF2422 PF17863 AAA lid domain BF2423 PF04972 BON domain BF2423 PF01476 LysM domain BF2424 PF00216 Bacterial DNA-binding protein BF2425 PF18693 TRAM domain BF2425 PF00919 Uncharacterized protein family UPF0004 BF2425 PF04055 Radical SAM superfamily BF2426 PF00448 SRP54-type protein, GTPase domain BF2426 PF02881 SRP54-type protein, helical bundle domain BF2427.1 PF00471 Ribosomal protein L33 BF2429 PF00830 Ribosomal L28 family BF2430 PF00994 Probable molybdopterin binding domain BF2430 PF02464 Competence-damaged protein BF2430 PF18146 Damage-inducible protein CinA KH domain BF2431 PF00814 Glycoprotease family BF2434 PF09180 Prolyl-tRNA synthetase, C-terminal BF2434 PF03129 Anticodon binding domain BF2434 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF2437 PF07676 WD40-like Beta Propeller Repeat BF2437 PF03572 Peptidase family S41 BF2437 PF14684 Tricorn protease C1 domain BF2437 PF14685 Tricorn protease PDZ domain BF2442 PF08808 RES domain BF2470 PF01555 DNA methylase BF2485 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BF2486 PF02277 Phosphoribosyltransferase BF2487 PF02654 Cobalamin-5-phosphate synthase BF2489 PF03186 CobD/Cbib protein BF2490 PF00155 Aminotransferase class I and II BF2491 PF07685 CobB/CobQ-like glutamine amidotransferase domain BF2491 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BF2501 PF00672 HAMP domain BF2501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2501 PF01627 Hpt domain BF2501 PF00072 Response regulator receiver domain BF2501 PF00512 His Kinase A (phospho-acceptor) domain BF2501 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BF2502 PF01923 Cobalamin adenosyltransferase BF2503 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BF2503 PF07685 CobB/CobQ-like glutamine amidotransferase domain BF2506 PF06738 Putative threonine/serine exporter BF2507 PF02080 TrkA-C domain BF2507 PF06826 Predicted Permease Membrane Region BF2510 PF00593 TonB dependent receptor BF2510 PF07715 TonB-dependent Receptor Plug Domain BF2512 PF07715 TonB-dependent Receptor Plug Domain BF2512 PF00593 TonB dependent receptor BF2514 PF02514 CobN/Magnesium Chelatase BF2514 PF11965 Domain of unknown function (DUF3479) BF2518 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF2518 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF2519 PF05175 Methyltransferase small domain BF2520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF2521 PF01888 CbiD BF2525 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BF2526 PF13361 UvrD-like helicase C-terminal domain BF2526 PF00580 UvrD/REP helicase N-terminal domain BF2527 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF2527 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF2529 PF02581 Thiamine monophosphate synthase BF2530 PF05690 Thiazole biosynthesis protein ThiG BF2531 PF13667 ThiC-associated domain BF2531 PF01964 Radical SAM ThiC family BF2533 PF04055 Radical SAM superfamily BF2533 PF06968 Biotin and Thiamin Synthesis associated domain BF2534 PF00581 Rhodanese-like domain BF2534 PF00899 ThiF family BF2535 PF02581 Thiamine monophosphate synthase BF2538 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BF2538 PF00391 PEP-utilising enzyme, mobile domain BF2538 PF02896 PEP-utilising enzyme, TIM barrel domain BF2539 PF01938 TRAM domain BF2539 PF05958 tRNA (Uracil-5-)-methyltransferase BF2540 PF00849 RNA pseudouridylate synthase BF2543 PF09827 CRISPR associated protein Cas2 BF2544 PF01867 CRISPR associated protein Cas1 BF2548 PF18019 HD domain BF2548 PF18395 Cas3 C-terminal domain BF2548 PF00270 DEAD/DEAH box helicase BF2551 PF00557 Metallopeptidase family M24 BF2552 PF02646 RmuC family BF2554 PF06965 Na+/H+ antiporter 1 BF2556 PF00679 Elongation factor G C-terminus BF2556 PF03144 Elongation factor Tu domain 2 BF2556 PF00009 Elongation factor Tu GTP binding domain BF2556 PF06421 GTP-binding protein LepA C-terminus BF2559 PF01894 Uncharacterised protein family UPF0047 BF2560 PF03372 Endonuclease/Exonuclease/phosphatase family BF2561 PF01566 Natural resistance-associated macrophage protein BF2564 PF01709 Transcriptional regulator BF2565 PF03484 tRNA synthetase B5 domain BF2565 PF03147 Ferredoxin-fold anticodon binding domain BF2565 PF01588 Putative tRNA binding domain BF2565 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BF2565 PF03483 B3/4 domain BF2566 PF00953 Glycosyl transferase family 4 BF2567 PF01370 NAD dependent epimerase/dehydratase family BF2568 PF13579 Glycosyl transferase 4-like domain BF2569 PF04321 RmlD substrate binding domain BF2569.1 PF02350 UDP-N-acetylglucosamine 2-epimerase BF2570 PF02719 Polysaccharide biosynthesis protein BF2570 PF08485 Polysaccharide biosynthesis protein C-terminal BF2571 PF01501 Glycosyl transferase family 8 BF2571 PF00535 Glycosyl transferase family 2 BF2572 PF00535 Glycosyl transferase family 2 BF2573 PF01531 Glycosyl transferase family 11 BF2575 PF00535 Glycosyl transferase family 2 BF2576 PF00465 Iron-containing alcohol dehydrogenase BF2577 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF2577 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF2579 PF04991 LicD family BF2581 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF2583 PF00483 Nucleotidyl transferase BF2588 PF00772 DnaB-like helicase N terminal domain BF2588 PF03796 DnaB-like helicase C terminal domain BF2589 PF00288 GHMP kinases N terminal domain BF2589 PF08544 GHMP kinases C terminal BF2592 PF16363 GDP-mannose 4,6 dehydratase BF2593 PF02508 Rnf-Nqr subunit, membrane protein BF2594 PF02508 Rnf-Nqr subunit, membrane protein BF2595 PF04205 FMN-binding domain BF2596 PF03116 NQR2, RnfD, RnfE family BF2597 PF10531 SLBB domain BF2597 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BF2597 PF13375 RnfC Barrel sandwich hybrid domain BF2597 PF13237 4Fe-4S dicluster domain BF2598 PF04060 Putative Fe-S cluster BF2602 PF06418 CTP synthase N-terminus BF2602 PF00117 Glutamine amidotransferase class-I BF2603 PF14849 YidC periplasmic domain BF2603 PF02096 60Kd inner membrane protein BF2604 PF01554 MatE BF2605 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BF2605 PF07676 WD40-like Beta Propeller Repeat BF2605 PF00326 Prolyl oligopeptidase family BF2606 PF12706 Beta-lactamase superfamily domain BF2608 PF03551 Transcriptional regulator PadR-like family BF2610 PF00854 POT family BF2611 PF04073 Aminoacyl-tRNA editing domain BF2612 PF17760 UvrA interaction domain BF2612 PF17755 UvrA DNA-binding domain BF2613 PF05257 CHAP domain BF2613 PF01476 LysM domain BF2619 PF00501 AMP-binding enzyme BF2619 PF14535 AMP-binding enzyme C-terminal domain BF2620 PF04851 Type III restriction enzyme, res subunit BF2620 PF12344 Ultra-violet resistance protein B BF2620 PF17757 UvrB interaction domain BF2620 PF00271 Helicase conserved C-terminal domain BF2622 PF02698 DUF218 domain BF2624 PF01411 tRNA synthetases class II (A) BF2624 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF2624 PF02272 DHHA1 domain BF2626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2626 PF00072 Response regulator receiver domain BF2626 PF01627 Hpt domain BF2626 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BF2626 PF00512 His Kinase A (phospho-acceptor) domain BF2626 PF00672 HAMP domain BF2629 PF00005 ABC transporter BF2635 PF02142 MGS-like domain BF2635 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF2635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF2636 PF00117 Glutamine amidotransferase class-I BF2636 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BF2637 PF00156 Phosphoribosyl transferase domain BF2638 PF01380 SIS domain BF2639 PF13537 Glutamine amidotransferase domain BF2639 PF00733 Asparagine synthase BF2642 PF01678 Diaminopimelate epimerase BF2643 PF00155 Aminotransferase class I and II BF2645 PF13090 Polyphosphate kinase C-terminal domain 2 BF2645 PF17941 Polyphosphate kinase C-terminal domain 1 BF2645 PF13089 Polyphosphate kinase N-terminal domain BF2645 PF02503 Polyphosphate kinase middle domain BF2646 PF02541 Ppx/GppA phosphatase family BF2647 PF00465 Iron-containing alcohol dehydrogenase BF2650 PF00291 Pyridoxal-phosphate dependent enzyme BF2651 PF04715 Anthranilate synthase component I, N terminal region BF2651 PF00425 chorismate binding enzyme BF2652 PF00117 Glutamine amidotransferase class-I BF2652 PF02885 Glycosyl transferase family, helical bundle domain BF2652 PF00591 Glycosyl transferase family, a/b domain BF2653 PF02885 Glycosyl transferase family, helical bundle domain BF2653 PF00591 Glycosyl transferase family, a/b domain BF2654 PF00218 Indole-3-glycerol phosphate synthase BF2655 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BF2656 PF00290 Tryptophan synthase alpha chain BF2658 PF17763 Glutaminase/Asparaginase C-terminal domain BF2658 PF00710 Asparaginase, N-terminal BF2660 PF00512 His Kinase A (phospho-acceptor) domain BF2660 PF13426 PAS domain BF2660 PF00072 Response regulator receiver domain BF2660 PF08448 PAS fold BF2660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2661 PF02397 Bacterial sugar transferase BF2663 PF12464 Maltose acetyltransferase BF2663 PF00132 Bacterial transferase hexapeptide (six repeats) BF2664 PF00072 Response regulator receiver domain BF2664 PF00196 Bacterial regulatory proteins, luxR family BF2666 PF01808 AICARFT/IMPCHase bienzyme BF2666 PF02142 MGS-like domain BF2667 PF00258 Flavodoxin BF2672 PF00085 Thioredoxin BF2673 PF03150 Di-haem cytochrome c peroxidase BF2675 PF07715 TonB-dependent Receptor Plug Domain BF2675 PF00593 TonB dependent receptor BF2677 PF07786 Protein of unknown function (DUF1624) BF2677 PF04235 Protein of unknown function (DUF418) BF2678 PF07690 Major Facilitator Superfamily BF2680 PF02080 TrkA-C domain BF2680 PF06826 Predicted Permease Membrane Region BF2682 PF16916 Dimerisation domain of Zinc Transporter BF2682 PF01545 Cation efflux family BF2688 PF00593 TonB dependent receptor BF2688 PF07715 TonB-dependent Receptor Plug Domain BF2689 PF02514 CobN/Magnesium Chelatase BF2693 PF00317 Ribonucleotide reductase, all-alpha domain BF2693 PF02867 Ribonucleotide reductase, barrel domain BF2693 PF03477 ATP cone domain BF2694 PF00268 Ribonucleotide reductase, small chain BF2697 PF06738 Putative threonine/serine exporter BF2698 PF06738 Putative threonine/serine exporter BF2698 PF12821 Threonine/Serine exporter, ThrE BF2700 PF00294 pfkB family carbohydrate kinase BF2701 PF00356 Bacterial regulatory proteins, lacI family BF2701 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF2703 PF01638 HxlR-like helix-turn-helix BF2705 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF2705 PF00072 Response regulator receiver domain BF2705 PF01627 Hpt domain BF2705 PF00512 His Kinase A (phospho-acceptor) domain BF2705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2710 PF00472 RF-1 domain BF2711 PF01139 tRNA-splicing ligase RtcB BF2716 PF00886 Ribosomal protein S16 BF2719 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) BF2720 PF13416 Bacterial extracellular solute-binding protein BF2721 PF00528 Binding-protein-dependent transport system inner membrane component BF2722 PF00528 Binding-protein-dependent transport system inner membrane component BF2723 PF08402 TOBE domain BF2723 PF00005 ABC transporter BF2724 PF00578 AhpC/TSA family BF2726 PF00343 Carbohydrate phosphorylase BF2726 PF11897 Protein of unknown function (DUF3417) BF2728 PF00137 ATP synthase subunit C BF2731 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF2731 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF2732 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF2732 PF16886 ATPsynthase alpha/beta subunit N-term extension BF2732 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF2735 PF01979 Amidohydrolase family BF2736 PF00486 Transcriptional regulatory protein, C terminal BF2736 PF00072 Response regulator receiver domain BF2737 PF00512 His Kinase A (phospho-acceptor) domain BF2737 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2737 PF18719 ArlS sensor domain BF2742 PF04545 Sigma-70, region 4 BF2742 PF03979 Sigma-70 factor, region 1.1 BF2742 PF00140 Sigma-70 factor, region 1.2 BF2742 PF04542 Sigma-70 region 2 BF2742 PF04539 Sigma-70 region 3 BF2744 PF17820 PDZ domain BF2744 PF13180 PDZ domain BF2746 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF2746 PF13378 Enolase C-terminal domain-like BF2747 PF00877 NlpC/P60 family BF2747 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BF2749 PF03631 Virulence factor BrkB BF2751 PF00881 Nitroreductase family BF2752 PF00677 Lumazine binding domain BF2753 PF01895 PhoU domain BF2754 PF00005 ABC transporter BF2755 PF00528 Binding-protein-dependent transport system inner membrane component BF2756 PF00528 Binding-protein-dependent transport system inner membrane component BF2758 PF00749 tRNA synthetases class I (E and Q), catalytic domain BF2758 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BF2763 PF08534 Redoxin BF2765 PF02796 Helix-turn-helix domain of resolvase BF2765 PF00239 Resolvase, N terminal domain BF2767 PF02397 Bacterial sugar transferase BF2769 PF13614 AAA domain BF2770 PF01510 N-acetylmuramoyl-L-alanine amidase BF2779 PF00535 Glycosyl transferase family 2 BF2785 PF00132 Bacterial transferase hexapeptide (six repeats) BF2788 PF00589 Phage integrase family BF2788 PF02899 Phage integrase, N-terminal SAM-like domain BF2801 PF01555 DNA methylase BF2822 PF02195 ParB-like nuclease domain BF2822 PF17762 HTH domain found in ParB protein BF2826 PF13614 AAA domain BF2835 PF07724 AAA domain (Cdc48 subfamily) BF2835 PF17871 AAA lid domain BF2835 PF02861 Clp amino terminal domain, pathogenicity island component BF2835 PF10431 C-terminal, D2-small domain, of ClpB protein BF2835 PF00004 ATPase family associated with various cellular activities (AAA) BF2847 PF03527 RHS protein BF2847 PF05593 RHS Repeat BF2850 PF05593 RHS Repeat BF2850 PF03527 RHS protein BF2852 PF03527 RHS protein BF2852 PF05593 RHS Repeat BF2872 PF00156 Phosphoribosyl transferase domain BF2873 PF01551 Peptidase family M23 BF2873 PF01464 Transglycosylase SLT domain BF2873 PF10145 Phage-related minor tail protein BF2885 PF05190 MutS family domain IV BF2885 PF00488 MutS domain V BF2885 PF05192 MutS domain III BF2885 PF01624 MutS domain I BF2885 PF05188 MutS domain II BF2923 PF00534 Glycosyl transferases group 1 BF2923 PF13439 Glycosyltransferase Family 4 BF2925 PF00534 Glycosyl transferases group 1 BF2925 PF13439 Glycosyltransferase Family 4 BF2926 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF2935 PF00483 Nucleotidyl transferase BF2935 PF01050 Mannose-6-phosphate isomerase BF2936 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit BF2937 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF2937 PF00364 Biotin-requiring enzyme BF2937 PF02817 e3 binding domain BF2949 PF01168 Alanine racemase, N-terminal domain BF2950 PF01180 Dihydroorotate dehydrogenase BF2961 PF00550 Phosphopantetheine attachment site BF2961 PF00668 Condensation domain BF2961 PF13193 AMP-binding enzyme C-terminal domain BF2961 PF00501 AMP-binding enzyme BF2962 PF07715 TonB-dependent Receptor Plug Domain BF2962 PF00593 TonB dependent receptor BF2963 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2963 PF00989 PAS fold BF2963 PF13426 PAS domain BF2963 PF13188 PAS domain BF2963 PF00512 His Kinase A (phospho-acceptor) domain BF2964 PF08448 PAS fold BF2964 PF08447 PAS fold BF2964 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF2966 PF13581 Histidine kinase-like ATPase domain BF2968 PF13426 PAS domain BF2968 PF07228 Stage II sporulation protein E (SpoIIE) BF2972 PF02719 Polysaccharide biosynthesis protein BF2973 PF13638 PIN domain BF2973 PF02562 PhoH-like protein BF2974 PF02875 Mur ligase family, glutamate ligase domain BF2974 PF08245 Mur ligase middle domain BF2975 PF01042 Endoribonuclease L-PSP BF2977 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF2977 PF00588 SpoU rRNA Methylase family BF2978 PF02463 RecF/RecN/SMC N terminal domain BF2979 PF04127 DNA / pantothenate metabolism flavoprotein BF2979 PF02441 Flavoprotein BF2980 PF00929 Exonuclease BF2981 PF02768 DNA polymerase III beta subunit, C-terminal domain BF2981 PF02767 DNA polymerase III beta subunit, central domain BF2981 PF00712 DNA polymerase III beta subunit, N-terminal domain BF2984 PF12706 Beta-lactamase superfamily domain BF2984 PF03099 Biotin/lipoate A/B protein ligase family BF2985 PF01565 FAD binding domain BF2985 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF2987 PF01370 NAD dependent epimerase/dehydratase family BF2988 PF00155 Aminotransferase class I and II BF3003 PF00589 Phage integrase family BF3003 PF02899 Phage integrase, N-terminal SAM-like domain BF3004 PF02899 Phage integrase, N-terminal SAM-like domain BF3004 PF00589 Phage integrase family BF3008 PF07669 Eco57I restriction-modification methylase BF3008 PF12950 TaqI-like C-terminal specificity domain BF3012 PF00239 Resolvase, N terminal domain BF3012 PF02796 Helix-turn-helix domain of resolvase BF3019 PF13614 AAA domain BF3026 PF00005 ABC transporter BF3027 PF01032 FecCD transport family BF3048 PF00210 Ferritin-like domain BF3049 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BF3049 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BF3050 PF01842 ACT domain BF3050 PF00696 Amino acid kinase family BF3051 PF00005 ABC transporter BF3052 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BF3052 PF01502 Phosphoribosyl-AMP cyclohydrolase BF3053 PF00977 Histidine biosynthesis protein BF3054 PF00977 Histidine biosynthesis protein BF3055 PF00117 Glutamine amidotransferase class-I BF3064 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF3064 PF14310 Fibronectin type III-like domain BF3064 PF00933 Glycosyl hydrolase family 3 N terminal domain BF3065 PF01208 Uroporphyrinogen decarboxylase (URO-D) BF3067 PF02310 B12 binding domain BF3067 PF02607 B12 binding domain BF3069 PF14310 Fibronectin type III-like domain BF3069 PF00933 Glycosyl hydrolase family 3 N terminal domain BF3069 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF3070 PF07980 SusD family BF3070 PF14322 Starch-binding associating with outer membrane BF3071 PF07715 TonB-dependent Receptor Plug Domain BF3071 PF00593 TonB dependent receptor BF3075 PF01965 DJ-1/PfpI family BF3077 PF00293 NUDIX domain BF3081 PF05971 RNA methyltransferase BF3088 PF11756 Nitrous oxide-stimulated promoter BF3090 PF02386 Cation transport protein BF3091 PF02311 AraC-like ligand binding domain BF3091 PF12833 Helix-turn-helix domain BF3092 PF07690 Major Facilitator Superfamily BF3093 PF00106 short chain dehydrogenase BF3094 PF12833 Helix-turn-helix domain BF3094 PF02311 AraC-like ligand binding domain BF3097 PF01370 NAD dependent epimerase/dehydratase family BF3097 PF08338 Domain of unknown function (DUF1731) BF3098 PF01183 Glycosyl hydrolases family 25 BF3100 PF00365 Phosphofructokinase BF3103 PF07980 SusD family BF3103 PF14322 Starch-binding associating with outer membrane BF3104 PF07715 TonB-dependent Receptor Plug Domain BF3104 PF00593 TonB dependent receptor BF3108 PF02321 Outer membrane efflux protein BF3109 PF00873 AcrB/AcrD/AcrF family BF3110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF3111 PF00027 Cyclic nucleotide-binding domain BF3111 PF01734 Patatin-like phospholipase BF3114 PF00795 Carbon-nitrogen hydrolase BF3115 PF01979 Amidohydrolase family BF3116 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BF3116 PF02585 GlcNAc-PI de-N-acetylase BF3117 PF13350 Tyrosine phosphatase family BF3126 PF04055 Radical SAM superfamily BF3126 PF11842 Domain of unknown function (DUF3362) BF3126 PF08497 Radical SAM N-terminal BF3127 PF00270 DEAD/DEAH box helicase BF3127 PF02559 CarD-like/TRCF domain BF3127 PF17757 UvrB interaction domain BF3127 PF03461 TRCF domain BF3127 PF00271 Helicase conserved C-terminal domain BF3128 PF00535 Glycosyl transferase family 2 BF3129 PF01979 Amidohydrolase family BF3131 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF3131 PF02607 B12 binding domain BF3131 PF02310 B12 binding domain BF3131 PF00809 Pterin binding enzyme BF3131 PF02574 Homocysteine S-methyltransferase BF3143 PF00149 Calcineurin-like phosphoesterase BF3143 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF3144 PF00664 ABC transporter transmembrane region BF3144 PF00005 ABC transporter BF3145 PF00005 ABC transporter BF3145 PF00664 ABC transporter transmembrane region BF3147 PF12320 Type 5 capsule protein repressor C-terminal domain BF3147 PF00149 Calcineurin-like phosphoesterase BF3151 PF00873 AcrB/AcrD/AcrF family BF3152 PF13533 Biotin-lipoyl like BF3154 PF10502 Signal peptidase, peptidase S26 BF3170 PF04055 Radical SAM superfamily BF3170 PF13186 Iron-sulfur cluster-binding domain BF3171 PF10459 Peptidase S46 BF3172 PF10459 Peptidase S46 BF3175 PF00085 Thioredoxin BF3176 PF00085 Thioredoxin BF3178 PF02915 Rubrerythrin BF3180 PF05656 Protein of unknown function (DUF805) BF3181 PF01432 Peptidase family M3 BF3182 PF00795 Carbon-nitrogen hydrolase BF3182 PF02540 NAD synthase BF3184 PF07715 TonB-dependent Receptor Plug Domain BF3184 PF00593 TonB dependent receptor BF3187 PF00475 Imidazoleglycerol-phosphate dehydratase BF3188 PF00155 Aminotransferase class I and II BF3189 PF00815 Histidinol dehydrogenase BF3190 PF08029 HisG, C-terminal domain BF3190 PF01634 ATP phosphoribosyltransferase BF3192 PF02678 Pirin BF3192 PF17954 Quercetinase C-terminal cupin domain BF3193 PF02683 Cytochrome C biogenesis protein transmembrane region BF3193 PF11412 Disulphide bond corrector protein DsbC BF3195 PF00485 Phosphoribulokinase / Uridine kinase family BF3196 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF3196 PF01464 Transglycosylase SLT domain BF3197 PF00474 Sodium:solute symporter family BF3199 PF02310 B12 binding domain BF3199 PF02607 B12 binding domain BF3199 PF00809 Pterin binding enzyme BF3199 PF02574 Homocysteine S-methyltransferase BF3199 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF3200 PF01668 SmpB protein BF3208 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF3208 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF3209 PF00128 Alpha amylase, catalytic domain BF3209 PF09154 Domain of unknown function (DUF1939) BF3210 PF03631 Virulence factor BrkB BF3213 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF3213 PF07497 Rho termination factor, RNA-binding domain BF3214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF3214 PF00512 His Kinase A (phospho-acceptor) domain BF3214 PF18698 Histidine kinase sensor domain BF3214 PF00672 HAMP domain BF3215 PF00989 PAS fold BF3215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF3215 PF00512 His Kinase A (phospho-acceptor) domain BF3216 PF01554 MatE BF3217 PF00448 SRP54-type protein, GTPase domain BF3217 PF02881 SRP54-type protein, helical bundle domain BF3217 PF02978 Signal peptide binding domain BF3218 PF00578 AhpC/TSA family BF3219 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BF3219 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BF3220 PF08534 Redoxin BF3224 PF00005 ABC transporter BF3231 PF12169 DNA polymerase III subunits gamma and tau domain III BF3239 PF07687 Peptidase dimerisation domain BF3239 PF01546 Peptidase family M20/M25/M40 BF3241 PF00924 Mechanosensitive ion channel BF3242 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF3244 PF02929 Beta galactosidase small chain BF3244 PF16353 Domain of unknown function(DUF4981) BF3244 PF00703 Glycosyl hydrolases family 2 BF3244 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF3244 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF3246 PF02838 Glycosyl hydrolase family 20, domain 2 BF3246 PF00728 Glycosyl hydrolase family 20, catalytic domain BF3246 PF07691 PA14 domain BF3247 PF00884 Sulfatase BF3247 PF16347 Domain of unknown function (DUF4976) BF3248 PF00884 Sulfatase BF3248 PF16385 Domain of unknown function BF3249 PF02838 Glycosyl hydrolase family 20, domain 2 BF3249 PF07691 PA14 domain BF3249 PF00728 Glycosyl hydrolase family 20, catalytic domain BF3250 PF00072 Response regulator receiver domain BF3250 PF07495 Y_Y_Y domain BF3250 PF07494 Two component regulator propeller BF3250 PF12833 Helix-turn-helix domain BF3250 PF00512 His Kinase A (phospho-acceptor) domain BF3250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF3251 PF01791 DeoC/LacD family aldolase BF3252 PF00300 Histidine phosphatase superfamily (branch 1) BF3254 PF00005 ABC transporter BF3255 PF00884 Sulfatase BF3255 PF16385 Domain of unknown function BF3256 PF07691 PA14 domain BF3256 PF00728 Glycosyl hydrolase family 20, catalytic domain BF3256 PF02838 Glycosyl hydrolase family 20, domain 2 BF3258 PF00593 TonB dependent receptor BF3258 PF07715 TonB-dependent Receptor Plug Domain BF3260 PF04542 Sigma-70 region 2 BF3260 PF08281 Sigma-70, region 4 BF3261 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF3261 PF03714 Bacterial pullanase-associated domain BF3261 PF00128 Alpha amylase, catalytic domain BF3262 PF02075 Crossover junction endodeoxyribonuclease RuvC BF3266 PF01409 tRNA synthetases class II core domain (F) BF3266 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BF3268 PF10576 Iron-sulfur binding domain of endonuclease III BF3268 PF00730 HhH-GPD superfamily base excision DNA repair protein BF3268 PF00633 Helix-hairpin-helix motif BF3269 PF00162 Phosphoglycerate kinase BF3272 PF04235 Protein of unknown function (DUF418) BF3275 PF00722 Glycosyl hydrolases family 16 BF3275 PF02018 Carbohydrate binding domain BF3276 PF00501 AMP-binding enzyme BF3276 PF00550 Phosphopantetheine attachment site BF3276 PF13193 AMP-binding enzyme C-terminal domain BF3276 PF00668 Condensation domain BF3278 PF03062 MBOAT, membrane-bound O-acyltransferase family BF3281 PF02545 Maf-like protein BF3285 PF00881 Nitroreductase family BF3286 PF00484 Carbonic anhydrase BF3289 PF01039 Carboxyl transferase domain BF3291 PF00682 HMGL-like BF3291 PF02436 Conserved carboxylase domain BF3291 PF00364 Biotin-requiring enzyme BF3292 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit BF3295 PF09087 Cyclomaltodextrinase, N-terminal BF3295 PF00128 Alpha amylase, catalytic domain BF3295 PF10438 Cyclo-malto-dextrinase C-terminal domain BF3297 PF13533 Biotin-lipoyl like BF3299 PF01116 Fructose-bisphosphate aldolase class-II BF3301 PF01197 Ribosomal protein L31 BF3304 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF3304 PF00128 Alpha amylase, catalytic domain BF3306 PF07980 SusD family BF3307 PF07715 TonB-dependent Receptor Plug Domain BF3307 PF00593 TonB dependent receptor BF3308 PF00356 Bacterial regulatory proteins, lacI family BF3310 PF03636 Glycosyl hydrolase family 65, N-terminal domain BF3310 PF03632 Glycosyl hydrolase family 65 central catalytic domain BF3310 PF03633 Glycosyl hydrolase family 65, C-terminal domain BF3311 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF3312 PF00873 AcrB/AcrD/AcrF family BF3315 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BF3315 PF02769 AIR synthase related protein, C-terminal domain BF3315 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BF3316 PF12833 Helix-turn-helix domain BF3316 PF07495 Y_Y_Y domain BF3316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF3316 PF00512 His Kinase A (phospho-acceptor) domain BF3316 PF00072 Response regulator receiver domain BF3316 PF07494 Two component regulator propeller BF3317 PF02417 Chromate transporter BF3319 PF02638 Glycosyl hydrolase-like 10 BF3320 PF17760 UvrA interaction domain BF3320 PF17755 UvrA DNA-binding domain BF3323 PF02554 Carbon starvation protein CstA BF3325 PF02638 Glycosyl hydrolase-like 10 BF3326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF3326 PF09456 RcsC Alpha-Beta-Loop (ABL) BF3326 PF00072 Response regulator receiver domain BF3326 PF00512 His Kinase A (phospho-acceptor) domain BF3332 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BF3332 PF12838 4Fe-4S dicluster domain BF3332 PF10371 Domain of unknown function BF3332 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF3332 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BF3332 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BF3334 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BF3335 PF00528 Binding-protein-dependent transport system inner membrane component BF3336 PF00005 ABC transporter BF3336 PF00571 CBS domain BF3339 PF07495 Y_Y_Y domain BF3339 PF00072 Response regulator receiver domain BF3339 PF07494 Two component regulator propeller BF3339 PF12833 Helix-turn-helix domain BF3339 PF00512 His Kinase A (phospho-acceptor) domain BF3339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF3340 PF01467 Cytidylyltransferase-like BF3340 PF00294 pfkB family carbohydrate kinase BF3342 PF08244 Glycosyl hydrolases family 32 C terminal BF3342 PF00251 Glycosyl hydrolases family 32 N-terminal domain BF3350 PF07690 Major Facilitator Superfamily BF3353 PF01734 Patatin-like phospholipase BF3354 PF00999 Sodium/hydrogen exchanger family BF3359 PF04170 NlpE N-terminal domain BF3361 PF00873 AcrB/AcrD/AcrF family BF3362 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF3362 PF00529 HlyD membrane-fusion protein of T1SS BF3363 PF02311 AraC-like ligand binding domain BF3363 PF12833 Helix-turn-helix domain BF3365 PF00072 Response regulator receiver domain BF3365 PF04397 LytTr DNA-binding domain BF3369 PF07715 TonB-dependent Receptor Plug Domain BF3369 PF00593 TonB dependent receptor BF3370 PF14322 Starch-binding associating with outer membrane BF3370 PF07980 SusD family BF3372 PF01012 Electron transfer flavoprotein domain BF3373 PF01012 Electron transfer flavoprotein domain BF3373 PF00766 Electron transfer flavoprotein FAD-binding domain BF3374 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF3374 PF02770 Acyl-CoA dehydrogenase, middle domain BF3374 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF3375 PF02837 Glycosyl hydrolases family 2, sugar binding domain BF3375 PF16353 Domain of unknown function(DUF4981) BF3375 PF02929 Beta galactosidase small chain BF3375 PF00703 Glycosyl hydrolases family 2 BF3375 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BF3377 PF00226 DnaJ domain BF3377 PF00684 DnaJ central domain BF3377 PF01556 DnaJ C terminal domain BF3378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF3378 PF01627 Hpt domain BF3378 PF00512 His Kinase A (phospho-acceptor) domain BF3378 PF00672 HAMP domain BF3378 PF00072 Response regulator receiver domain BF3378 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BF3379 PF00884 Sulfatase BF3379 PF08019 Phosphoethanolamine transferase EptA/EptB BF3383 PF00085 Thioredoxin BF3383 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF3384 PF01212 Beta-eliminating lyase BF3386 PF04542 Sigma-70 region 2 BF3386 PF08281 Sigma-70, region 4 BF3389 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF3389 PF00205 Thiamine pyrophosphate enzyme, central domain BF3389 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF3395 PF00118 TCP-1/cpn60 chaperonin family BF3396 PF00166 Chaperonin 10 Kd subunit BF3404 PF03976 Polyphosphate kinase 2 (PPK2) BF3413 PF17678 Glycosyl hydrolase family 92 N-terminal domain BF3413 PF07971 Glycosyl hydrolase family 92 BF3415 PF00326 Prolyl oligopeptidase family BF3415 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BF3416 PF03129 Anticodon binding domain BF3416 PF13393 Histidyl-tRNA synthetase BF3421 PF00709 Adenylosuccinate synthetase BF3427 PF09382 RQC domain BF3427 PF00570 HRDC domain BF3427 PF00271 Helicase conserved C-terminal domain BF3427 PF00270 DEAD/DEAH box helicase BF3427 PF16124 RecQ zinc-binding BF3430 PF00291 Pyridoxal-phosphate dependent enzyme BF3432 PF01569 PAP2 superfamily BF3436 PF07980 SusD family BF3436 PF14322 Starch-binding associating with outer membrane BF3437 PF00593 TonB dependent receptor BF3437 PF07715 TonB-dependent Receptor Plug Domain BF3440 PF01370 NAD dependent epimerase/dehydratase family BF3443 PF00535 Glycosyl transferase family 2 BF3444 PF00180 Isocitrate/isopropylmalate dehydrogenase BF3445 PF08502 LeuA allosteric (dimerisation) domain BF3445 PF00682 HMGL-like BF3446 PF00694 Aconitase C-terminal domain BF3447 PF00330 Aconitase family (aconitate hydratase) BF3448 PF08502 LeuA allosteric (dimerisation) domain BF3448 PF00682 HMGL-like BF3451 PF01343 Peptidase family S49 BF3452 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BF3453 PF01048 Phosphorylase superfamily BF3454 PF00586 AIR synthase related protein, N-terminal domain BF3454 PF02769 AIR synthase related protein, C-terminal domain BF3464 PF00589 Phage integrase family BF3480 PF12833 Helix-turn-helix domain BF3480 PF06445 GyrI-like small molecule binding domain BF3485 PF17191 RecG wedge domain BF3485 PF00270 DEAD/DEAH box helicase BF3485 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BF3487 PF13419 Haloacid dehalogenase-like hydrolase BF3488 PF14602 Hexapeptide repeat of succinyl-transferase BF3488 PF12464 Maltose acetyltransferase BF3490 PF12833 Helix-turn-helix domain BF3490 PF02311 AraC-like ligand binding domain BF3491 PF00512 His Kinase A (phospho-acceptor) domain BF3491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF3491 PF12833 Helix-turn-helix domain BF3491 PF07495 Y_Y_Y domain BF3491 PF07494 Two component regulator propeller BF3491 PF00072 Response regulator receiver domain BF3492 PF10566 Glycoside hydrolase 97 BF3492 PF14508 Glycosyl-hydrolase 97 N-terminal BF3492 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BF3496 PF07980 SusD family BF3496 PF14322 Starch-binding associating with outer membrane BF3497 PF07715 TonB-dependent Receptor Plug Domain BF3497 PF00593 TonB dependent receptor BF3503 PF03167 Uracil DNA glycosylase superfamily BF3504 PF02311 AraC-like ligand binding domain BF3504 PF12833 Helix-turn-helix domain BF3507 PF01814 Hemerythrin HHE cation binding domain BF3507 PF04405 Domain of Unknown function (DUF542) BF3508 PF01575 MaoC like domain BF3509 PF04134 Protein of unknown function, DUF393 BF3524 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BF3524 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BF3527 PF02254 TrkA-N domain BF3527 PF00999 Sodium/hydrogen exchanger family BF3529 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF3529 PF00289 Biotin carboxylase, N-terminal domain BF3529 PF02785 Biotin carboxylase C-terminal domain BF3530 PF00364 Biotin-requiring enzyme BF3530 PF02436 Conserved carboxylase domain BF3530 PF00682 HMGL-like BF3531 PF01039 Carboxyl transferase domain BF3532 PF00857 Isochorismatase family BF3534 PF00144 Beta-lactamase BF3536 PF00478 IMP dehydrogenase / GMP reductase domain BF3536 PF00571 CBS domain BF3541 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF3543 PF00873 AcrB/AcrD/AcrF family BF3544 PF02321 Outer membrane efflux protein BF3545 PF01053 Cys/Met metabolism PLP-dependent enzyme BF3563 PF00873 AcrB/AcrD/AcrF family BF3565 PF01476 LysM domain BF3565 PF01464 Transglycosylase SLT domain BF3566 PF00027 Cyclic nucleotide-binding domain BF3566 PF00520 Ion transport protein BF3567 PF13195 Protein of unknown function (DUF4011) BF3567 PF13087 AAA domain BF3567 PF13086 AAA domain BF3567 PF13087 AAA domain BF3567 PF13195 Protein of unknown function (DUF4011) BF3567 PF13086 AAA domain BF3569 PF02308 MgtC family BF3573 PF01641 SelR domain BF3573 PF01625 Peptide methionine sulfoxide reductase BF3576 PF01235 Sodium:alanine symporter family BF3578 PF04055 Radical SAM superfamily BF3578 PF12544 Lysine-2,3-aminomutase BF3579 PF00860 Permease family BF3583 PF03960 ArsC family BF3584 PF07715 TonB-dependent Receptor Plug Domain BF3584 PF00593 TonB dependent receptor BF3589 PF12034 Domain of unknown function (DUF3520) BF3589 PF12450 von Willebrand factor BF3589 PF00092 von Willebrand factor type A domain BF3591 PF08543 Phosphomethylpyrimidine kinase BF3593 PF11870 Domain of unknown function (DUF3390) BF3593 PF13183 4Fe-4S dicluster domain BF3593 PF02589 LUD domain BF3594 PF02754 Cysteine-rich domain BF3595 PF04055 Radical SAM superfamily BF3597 PF04304 Protein of unknown function (DUF454) BF3598 PF01048 Phosphorylase superfamily BF3601 PF03932 CutC family BF3602 PF01966 HD domain BF3602 PF00013 KH domain BF3602 PF12072 Domain of unknown function (DUF3552) BF3605 PF00390 Malic enzyme, N-terminal domain BF3605 PF01515 Phosphate acetyl/butaryl transferase BF3605 PF03949 Malic enzyme, NAD binding domain BF3607 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF3607 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF3611 PF00593 TonB dependent receptor BF3611 PF07715 TonB-dependent Receptor Plug Domain BF3635 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF3635 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF3636 PF00557 Metallopeptidase family M24 BF3636 PF01321 Creatinase/Prolidase N-terminal domain BF3640 PF01368 DHH family BF3640 PF02272 DHHA1 domain BF3640 PF00571 CBS domain BF3640 PF01743 Poly A polymerase head domain BF3643 PF00313 'Cold-shock' DNA-binding domain BF3647 PF01370 NAD dependent epimerase/dehydratase family BF3648 PF00535 Glycosyl transferase family 2 BF3649 PF00534 Glycosyl transferases group 1 BF3649 PF13439 Glycosyltransferase Family 4 BF3653 PF00132 Bacterial transferase hexapeptide (six repeats) BF3654 PF00535 Glycosyl transferase family 2 BF3656 PF02350 UDP-N-acetylglucosamine 2-epimerase BF3657 PF00535 Glycosyl transferase family 2 BF3659 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF3660 PF02911 Formyl transferase, C-terminal domain BF3660 PF00551 Formyl transferase BF3664 PF00483 Nucleotidyl transferase BF3665 PF00953 Glycosyl transferase family 4 BF3676 PF00216 Bacterial DNA-binding protein BF3677 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BF3681 PF18284 DNA methylase N-terminal domain BF3681 PF00145 C-5 cytosine-specific DNA methylase BF3682 PF09019 EcoRII C terminal BF3682 PF09217 Restriction endonuclease EcoRII, N-terminal BF3683 PF03852 DNA mismatch endonuclease Vsr BF3689 PF01330 RuvA N terminal domain BF3689 PF07499 RuvA, C-terminal domain BF3690 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain BF3690 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF3691 PF03006 Haemolysin-III related BF3692 PF03477 ATP cone domain BF3692 PF13597 Anaerobic ribonucleoside-triphosphate reductase BF3694 PF07690 Major Facilitator Superfamily BF3695 PF00266 Aminotransferase class-V BF3696 PF13419 Haloacid dehalogenase-like hydrolase BF3698 PF17820 PDZ domain BF3698 PF02163 Peptidase family M50 BF3699 PF13288 DXP reductoisomerase C-terminal domain BF3699 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF3699 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF3701 PF01782 RimM N-terminal domain BF3702 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF3704 PF00814 Glycoprotease family BF3707 PF00625 Guanylate kinase BF3708 PF01467 Cytidylyltransferase-like BF3709 PF00149 Calcineurin-like phosphoesterase BF3709 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF3710 PF01040 UbiA prenyltransferase family BF3711 PF16363 GDP-mannose 4,6 dehydratase BF3712 PF00483 Nucleotidyl transferase BF3714 PF13090 Polyphosphate kinase C-terminal domain 2 BF3714 PF17941 Polyphosphate kinase C-terminal domain 1 BF3714 PF02503 Polyphosphate kinase middle domain BF3714 PF13089 Polyphosphate kinase N-terminal domain BF3716 PF00072 Response regulator receiver domain BF3716 PF02954 Bacterial regulatory protein, Fis family BF3716 PF00158 Sigma-54 interaction domain BF3717 PF00005 ABC transporter BF3717 PF12848 ABC transporter BF3717 PF16326 ABC transporter C-terminal domain BF3722 PF00873 AcrB/AcrD/AcrF family BF3726 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF BF3726 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BF3726 PF01189 16S rRNA methyltransferase RsmB/F BF3731 PF04542 Sigma-70 region 2 BF3731 PF08281 Sigma-70, region 4 BF3733 PF13091 PLD-like domain BF3733 PF13396 Phospholipase_D-nuclease N-terminal BF3734 PF00303 Thymidylate synthase BF3735 PF00186 Dihydrofolate reductase BF3736 PF01037 Lrp/AsnC ligand binding domain BF3736 PF13404 AsnC-type helix-turn-helix domain BF3742 PF01618 MotA/TolQ/ExbB proton channel family BF3743 PF01026 TatD related DNase BF3745 PF00348 Polyprenyl synthetase BF3746 PF03544 Gram-negative bacterial TonB protein C-terminal BF3747 PF02224 Cytidylate kinase BF3748 PF02401 LytB protein BF3749 PF00365 Phosphofructokinase BF3750 PF00106 short chain dehydrogenase BF3751 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF3753 PF00285 Citrate synthase, C-terminal domain BF3754 PF00180 Isocitrate/isopropylmalate dehydrogenase BF3755 PF00330 Aconitase family (aconitate hydratase) BF3755 PF00694 Aconitase C-terminal domain BF3756 PF13086 AAA domain BF3756 PF13087 AAA domain BF3756 PF13195 Protein of unknown function (DUF4011) BF3758 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF3758 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF3762 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF3762 PF00205 Thiamine pyrophosphate enzyme, central domain BF3762 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF3763 PF00920 Dehydratase family BF3768 PF00223 Photosystem I psaA/psaB protein BF3768 PF00691 OmpA family BF3770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF3772 PF03313 Serine dehydratase alpha chain BF3778 PF01676 Metalloenzyme superfamily BF3780 PF07980 SusD family BF3780 PF14322 Starch-binding associating with outer membrane BF3781 PF07715 TonB-dependent Receptor Plug Domain BF3781 PF00593 TonB dependent receptor BF3784 PF14322 Starch-binding associating with outer membrane BF3784 PF07980 SusD family BF3785 PF00593 TonB dependent receptor BF3785 PF07715 TonB-dependent Receptor Plug Domain BF3787 PF00754 F5/8 type C domain BF3787 PF00041 Fibronectin type III domain BF3787 PF07555 beta-N-acetylglucosaminidase BF3787 PF02838 Glycosyl hydrolase family 20, domain 2 BF3787 PF00963 Cohesin domain BF3789 PF07715 TonB-dependent Receptor Plug Domain BF3789 PF00593 TonB dependent receptor BF3792 PF01264 Chorismate synthase BF3793 PF07687 Peptidase dimerisation domain BF3793 PF01546 Peptidase family M20/M25/M40 BF3796 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BF3796 PF01619 Proline dehydrogenase BF3796 PF00171 Aldehyde dehydrogenase family BF3796 PF14850 DNA-binding domain of Proline dehydrogenase BF3798 PF01131 DNA topoisomerase BF3798 PF01751 Toprim domain BF3800 PF02310 B12 binding domain BF3800 PF01642 Methylmalonyl-CoA mutase BF3801 PF01642 Methylmalonyl-CoA mutase BF3802 PF02080 TrkA-C domain BF3802 PF06826 Predicted Permease Membrane Region BF3807 PF01734 Patatin-like phospholipase BF3809 PF01554 MatE BF3810 PF01336 OB-fold nucleic acid binding domain BF3810 PF00152 tRNA synthetases class II (D, K and N) BF3811 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BF3811 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BF3812 PF00342 Phosphoglucose isomerase BF3814 PF13419 Haloacid dehalogenase-like hydrolase BF3815 PF03590 Aspartate-ammonia ligase BF3816 PF03167 Uracil DNA glycosylase superfamily BF3819 PF00728 Glycosyl hydrolase family 20, catalytic domain BF3819 PF02838 Glycosyl hydrolase family 20, domain 2 BF3819 PF07691 PA14 domain BF3823 PF11741 AMIN domain BF3823 PF01520 N-acetylmuramoyl-L-alanine amidase BF3825 PF11638 DnaA N-terminal domain BF3825 PF08299 Bacterial dnaA protein helix-turn-helix BF3825 PF00308 Bacterial dnaA protein BF3827 PF00317 Ribonucleotide reductase, all-alpha domain BF3827 PF03477 ATP cone domain BF3827 PF02867 Ribonucleotide reductase, barrel domain BF3828 PF02446 4-alpha-glucanotransferase BF3830 PF02152 Dihydroneopterin aldolase BF3831 PF08534 Redoxin BF3847 PF13149 Fimbrillin-like BF3851 PF12833 Helix-turn-helix domain BF3851 PF02311 AraC-like ligand binding domain BF3852 PF13784 Fic/DOC family N-terminal BF3852 PF02661 Fic/DOC family BF3853 PF02142 MGS-like domain BF3856 PF00919 Uncharacterized protein family UPF0004 BF3856 PF04055 Radical SAM superfamily BF3857 PF00501 AMP-binding enzyme BF3860 PF01281 Ribosomal protein L9, N-terminal domain BF3860 PF03948 Ribosomal protein L9, C-terminal domain BF3861 PF01084 Ribosomal protein S18 BF3862 PF01250 Ribosomal protein S6 BF3864 PF00072 Response regulator receiver domain BF3864 PF00486 Transcriptional regulatory protein, C terminal BF3865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF3865 PF00512 His Kinase A (phospho-acceptor) domain BF3867 PF00679 Elongation factor G C-terminus BF3867 PF00009 Elongation factor Tu GTP binding domain BF3867 PF03144 Elongation factor Tu domain 2 BF3867 PF14492 Elongation Factor G, domain II BF3867 PF03764 Elongation factor G, domain IV BF3869 PF04055 Radical SAM superfamily BF3869 PF06969 HemN C-terminal domain BF3873 PF07715 TonB-dependent Receptor Plug Domain BF3873 PF00593 TonB dependent receptor BF3876 PF03956 Lysine exporter LysO BF3883 PF00488 MutS domain V BF3883 PF01713 Smr domain BF3884 PF02547 Queuosine biosynthesis protein BF3885 PF00293 NUDIX domain BF3886 PF00255 Glutathione peroxidase BF3888 PF00873 AcrB/AcrD/AcrF family BF3890 PF07694 5TMR of 5TMR-LYT BF3890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF3890 PF06580 Histidine kinase BF3891 PF04397 LytTr DNA-binding domain BF3891 PF00072 Response regulator receiver domain BF3895 PF01926 50S ribosome-binding GTPase BF3895 PF12631 MnmE helical domain BF3895 PF10396 GTP-binding protein TrmE N-terminus BF3897 PF01301 Glycosyl hydrolases family 35 BF3898 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF3898 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF3898 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF3898 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF3900 PF01368 DHH family BF3900 PF02272 DHHA1 domain BF3901 PF03772 Competence protein BF3902 PF00834 Ribulose-phosphate 3 epimerase family BF3903 PF00551 Formyl transferase BF3903 PF02911 Formyl transferase, C-terminal domain BF3905 PF01300 Telomere recombination BF3911 PF02397 Bacterial sugar transferase BF3912 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF3917 PF00534 Glycosyl transferases group 1 BF3919 PF00535 Glycosyl transferase family 2 BF3920 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF3920 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF3920 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF3921 PF01370 NAD dependent epimerase/dehydratase family BF3922 PF13439 Glycosyltransferase Family 4 BF3922 PF00534 Glycosyl transferases group 1 BF3923 PF01943 Polysaccharide biosynthesis protein BF3930 PF03352 Methyladenine glycosylase BF3932 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BF3932 PF17768 RecJ OB domain BF3932 PF02272 DHHA1 domain BF3932 PF01368 DHH family BF3933 PF00271 Helicase conserved C-terminal domain BF3933 PF00270 DEAD/DEAH box helicase BF3935 PF07690 Major Facilitator Superfamily BF3936 PF13859 BNR repeat-like domain BF3936 PF14873 N-terminal domain of BNR-repeat neuraminidase BF3938 PF07980 SusD family BF3938 PF14322 Starch-binding associating with outer membrane BF3939 PF07715 TonB-dependent Receptor Plug Domain BF3939 PF00593 TonB dependent receptor BF3940 PF00701 Dihydrodipicolinate synthetase family BF3941 PF00392 Bacterial regulatory proteins, gntR family BF3941 PF07729 FCD domain BF3943 PF00155 Aminotransferase class I and II BF3944 PF18152 DAHP synthase ferredoxin-like domain BF3944 PF00793 DAHP synthetase I family BF3947 PF10410 DnaB-helicase binding domain of primase BF3947 PF08275 DNA primase catalytic core, N-terminal domain BF3947 PF01807 CHC2 zinc finger BF3948 PF16347 Domain of unknown function (DUF4976) BF3948 PF00884 Sulfatase BF3949 PF00884 Sulfatase BF3951 PF00593 TonB dependent receptor BF3951 PF07715 TonB-dependent Receptor Plug Domain BF3954 PF01227 GTP cyclohydrolase I BF3956 PF00121 Triosephosphate isomerase BF3959 PF04225 Opacity-associated protein A LysM-like domain BF3959 PF01551 Peptidase family M23 BF3960 PF00334 Nucleoside diphosphate kinase BF3961 PF00271 Helicase conserved C-terminal domain BF3961 PF17191 RecG wedge domain BF3961 PF00270 DEAD/DEAH box helicase BF3962 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BF3963 PF01965 DJ-1/PfpI family BF3966 PF01618 MotA/TolQ/ExbB proton channel family BF3967 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BF3968 PF01513 ATP-NAD kinase BF3971 PF00593 TonB dependent receptor BF3971 PF07715 TonB-dependent Receptor Plug Domain BF3978 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF3978 PF00056 lactate/malate dehydrogenase, NAD binding domain BF3985 PF13533 Biotin-lipoyl like BF3988 PF10566 Glycoside hydrolase 97 BF3988 PF14508 Glycosyl-hydrolase 97 N-terminal BF3988 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BF3992 PF03544 Gram-negative bacterial TonB protein C-terminal BF3993 PF00085 Thioredoxin BF3994 PF01883 Iron-sulfur cluster assembly protein BF3994 PF10609 NUBPL iron-transfer P-loop NTPase BF3995 PF02390 Putative methyltransferase BF3997 PF01063 Amino-transferase class IV BF3998 PF02609 Exonuclease VII small subunit BF3999 PF02601 Exonuclease VII, large subunit BF3999 PF13742 OB-fold nucleic acid binding domain BF4006 PF02542 YgbB family BF4007 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF4008 PF02629 CoA binding domain BF4008 PF06971 Putative DNA-binding protein N-terminus BF4010 PF00889 Elongation factor TS BF4011 PF00318 Ribosomal protein S2 BF4012 PF00380 Ribosomal protein S9/S16 BF4013 PF00572 Ribosomal protein L13 BF4016 PF01336 OB-fold nucleic acid binding domain BF4016 PF00152 tRNA synthetases class II (D, K and N) BF4017 PF01479 S4 domain BF4017 PF00849 RNA pseudouridylate synthase BF4018 PF08328 Adenylosuccinate lyase C-terminal BF4018 PF00206 Lyase BF4019 PF01301 Glycosyl hydrolases family 35 BF4020 PF12464 Maltose acetyltransferase BF4020 PF14602 Hexapeptide repeat of succinyl-transferase BF4021 PF03883 Peroxide stress protein YaaA BF4022 PF02838 Glycosyl hydrolase family 20, domain 2 BF4022 PF07555 beta-N-acetylglucosaminidase BF4028 PF00691 OmpA family BF4028 PF01389 OmpA-like transmembrane domain BF4035 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF4035 PF02142 MGS-like domain BF4035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF4036 PF00579 tRNA synthetases class I (W and Y) BF4037 PF01389 OmpA-like transmembrane domain BF4037 PF00691 OmpA family BF4039 PF00664 ABC transporter transmembrane region BF4039 PF00005 ABC transporter BF4039 PF03412 Peptidase C39 family BF4042 PF01501 Glycosyl transferase family 8 BF4042 PF00535 Glycosyl transferase family 2 BF4047 PF04055 Radical SAM superfamily BF4047 PF06463 Molybdenum Cofactor Synthesis C BF4053 PF00534 Glycosyl transferases group 1 BF4053 PF13439 Glycosyltransferase Family 4 BF4067 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system BF4069 PF08676 MutL C terminal dimerisation domain BF4069 PF01119 DNA mismatch repair protein, C-terminal domain BF4075 PF00571 CBS domain BF4075 PF00478 IMP dehydrogenase / GMP reductase domain BF4076 PF09382 RQC domain BF4076 PF16124 RecQ zinc-binding BF4076 PF00570 HRDC domain BF4076 PF00271 Helicase conserved C-terminal domain BF4076 PF00270 DEAD/DEAH box helicase BF4077 PF06689 ClpX C4-type zinc finger BF4077 PF07724 AAA domain (Cdc48 subfamily) BF4077 PF10431 C-terminal, D2-small domain, of ClpB protein BF4078 PF00574 Clp protease BF4079 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF4079 PF05698 Bacterial trigger factor protein (TF) C-terminus BF4079 PF05697 Bacterial trigger factor protein (TF) BF4082 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) BF4083 PF00005 ABC transporter BF4084 PF02405 Permease MlaE BF4085 PF00005 ABC transporter BF4086 PF00072 Response regulator receiver domain BF4086 PF00196 Bacterial regulatory proteins, luxR family BF4087 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BF4087 PF01926 50S ribosome-binding GTPase BF4088 PF07650 KH domain BF4088 PF01926 50S ribosome-binding GTPase BF4089 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF4089 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF4090 PF01783 Ribosomal L32p protein family BF4092 PF02219 Methylenetetrahydrofolate reductase BF4093 PF09115 DNA polymerase III, delta subunit, C terminal BF4094 PF04468 PSP1 C-terminal conserved region BF4096 PF01098 Cell cycle protein BF4097 PF03717 Penicillin-binding Protein dimerisation domain BF4097 PF00905 Penicillin binding protein transpeptidase domain BF4099 PF04085 rod shape-determining protein MreC BF4101 PF02142 MGS-like domain BF4101 PF01808 AICARFT/IMPCHase bienzyme BF4102 PF05649 Peptidase family M13 BF4102 PF01431 Peptidase family M13 BF4103 PF16326 ABC transporter C-terminal domain BF4103 PF00005 ABC transporter BF4103 PF12848 ABC transporter BF4110 PF00072 Response regulator receiver domain BF4110 PF09456 RcsC Alpha-Beta-Loop (ABL) BF4110 PF00512 His Kinase A (phospho-acceptor) domain BF4110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4111 PF01554 MatE BF4112 PF05193 Peptidase M16 inactive domain BF4112 PF00675 Insulinase (Peptidase family M16) BF4113 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BF4114 PF00158 Sigma-54 interaction domain BF4114 PF00072 Response regulator receiver domain BF4114 PF02954 Bacterial regulatory protein, Fis family BF4117 PF00849 RNA pseudouridylate synthase BF4117 PF01479 S4 domain BF4119 PF00440 Bacterial regulatory proteins, tetR family BF4119 PF08360 QacR-like protein, C-terminal region BF4123 PF00005 ABC transporter BF4124 PF05139 Erythromycin esterase BF4128 PF00005 ABC transporter BF4130 PF12849 PBP superfamily domain BF4136 PF03062 MBOAT, membrane-bound O-acyltransferase family BF4140 PF00873 AcrB/AcrD/AcrF family BF4141 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BF4143 PF00440 Bacterial regulatory proteins, tetR family BF4144 PF00221 Aromatic amino acid lyase BF4146 PF01979 Amidohydrolase family BF4147 PF07837 Formiminotransferase domain, N-terminal subdomain BF4147 PF02971 Formiminotransferase domain BF4148 PF17392 Urocanase C-terminal domain BF4148 PF17391 Urocanase N-terminal domain BF4148 PF01175 Urocanase Rossmann-like domain BF4151 PF05188 MutS domain II BF4151 PF00488 MutS domain V BF4151 PF05190 MutS family domain IV BF4151 PF01624 MutS domain I BF4151 PF05192 MutS domain III BF4154 PF01196 Ribosomal protein L17 BF4155 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BF4155 PF01000 RNA polymerase Rpb3/RpoA insert domain BF4155 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BF4156 PF00163 Ribosomal protein S4/S9 N-terminal domain BF4156 PF01479 S4 domain BF4157 PF00411 Ribosomal protein S11 BF4158 PF00416 Ribosomal protein S13/S18 BF4158.1 PF00444 Ribosomal protein L36 BF4159 PF01176 Translation initiation factor 1A / IF-1 BF4160 PF00557 Metallopeptidase family M24 BF4161 PF00344 SecY translocase BF4162 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BF4163 PF00327 Ribosomal protein L30p/L7e BF4164 PF03719 Ribosomal protein S5, C-terminal domain BF4164 PF00333 Ribosomal protein S5, N-terminal domain BF4165 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BF4166 PF00347 Ribosomal protein L6 BF4167 PF00410 Ribosomal protein S8 BF4168 PF00253 Ribosomal protein S14p/S29e BF4169 PF00281 Ribosomal protein L5 BF4169 PF00673 ribosomal L5P family C-terminus BF4170 PF00467 KOW motif BF4170 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BF4171 PF00238 Ribosomal protein L14p/L23e BF4172 PF00366 Ribosomal protein S17 BF4173 PF00831 Ribosomal L29 protein BF4174 PF00252 Ribosomal protein L16p/L10e BF4175 PF07650 KH domain BF4175 PF00189 Ribosomal protein S3, C-terminal domain BF4176 PF00237 Ribosomal protein L22p/L17e BF4177 PF00203 Ribosomal protein S19 BF4178 PF00181 Ribosomal Proteins L2, RNA binding domain BF4178 PF03947 Ribosomal Proteins L2, C-terminal domain BF4179 PF00276 Ribosomal protein L23 BF4180 PF00573 Ribosomal protein L4/L1 family BF4181 PF00297 Ribosomal protein L3 BF4182 PF00338 Ribosomal protein S10p/S20e BF4183 PF03764 Elongation factor G, domain IV BF4183 PF00679 Elongation factor G C-terminus BF4183 PF00009 Elongation factor Tu GTP binding domain BF4183 PF03144 Elongation factor Tu domain 2 BF4183 PF14492 Elongation Factor G, domain II BF4184 PF00177 Ribosomal protein S7p/S5e BF4185 PF00164 Ribosomal protein S12/S23 BF4191 PF05000 RNA polymerase Rpb1, domain 4 BF4191 PF04998 RNA polymerase Rpb1, domain 5 BF4191 PF04983 RNA polymerase Rpb1, domain 3 BF4191 PF04997 RNA polymerase Rpb1, domain 1 BF4191 PF00623 RNA polymerase Rpb1, domain 2 BF4192 PF04563 RNA polymerase beta subunit BF4192 PF04560 RNA polymerase Rpb2, domain 7 BF4192 PF04561 RNA polymerase Rpb2, domain 2 BF4192 PF00562 RNA polymerase Rpb2, domain 6 BF4192 PF10385 RNA polymerase beta subunit external 1 domain BF4192 PF04565 RNA polymerase Rpb2, domain 3 BF4193 PF16320 Ribosomal protein L7/L12 dimerisation domain BF4193 PF00542 Ribosomal protein L7/L12 C-terminal domain BF4194 PF00466 Ribosomal protein L10 BF4195 PF00687 Ribosomal protein L1p/L10e family BF4196 PF03946 Ribosomal protein L11, N-terminal domain BF4196 PF00298 Ribosomal protein L11, RNA binding domain BF4197 PF02357 Transcription termination factor nusG BF4197 PF00467 KOW motif BF4199 PF03143 Elongation factor Tu C-terminal domain BF4199 PF03144 Elongation factor Tu domain 2 BF4199 PF00009 Elongation factor Tu GTP binding domain BF4200 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BF4200 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BF4201 PF00589 Phage integrase family BF4201 PF02899 Phage integrase, N-terminal SAM-like domain BF4202 PF01165 Ribosomal protein S21 BF4204 PF00132 Bacterial transferase hexapeptide (six repeats) BF4206 PF00749 tRNA synthetases class I (E and Q), catalytic domain BF4207 PF01966 HD domain BF4207 PF07697 7TM-HD extracellular BF4207 PF07698 7TM receptor with intracellular HD hydrolase BF4208 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF4210 PF18074 Primosomal protein N C-terminal domain BF4210 PF17764 3′ DNA-binding domain (3′BD) BF4210 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BF4210 PF00271 Helicase conserved C-terminal domain BF4210 PF04851 Type III restriction enzyme, res subunit BF4213 PF10415 Fumarase C C-terminus BF4213 PF00206 Lyase BF4214 PF03605 Anaerobic c4-dicarboxylate membrane transporter BF4215 PF00710 Asparaginase, N-terminal BF4215 PF17763 Glutaminase/Asparaginase C-terminal domain BF4221 PF02384 N-6 DNA Methylase BF4223 PF06250 YhcG PDDEXK nuclease domain BF4223 PF17761 DUF1016 N-terminal domain BF4228 PF00589 Phage integrase family BF4234 PF12833 Helix-turn-helix domain BF4234 PF00512 His Kinase A (phospho-acceptor) domain BF4234 PF07494 Two component regulator propeller BF4234 PF07495 Y_Y_Y domain BF4234 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4234 PF00072 Response regulator receiver domain BF4240 PF01695 IstB-like ATP binding protein BF4241 PF00665 Integrase core domain BF4242 PF13859 BNR repeat-like domain BF4242 PF14873 N-terminal domain of BNR-repeat neuraminidase BF4245 PF07690 Major Facilitator Superfamily BF4247 PF00593 TonB dependent receptor BF4247 PF07715 TonB-dependent Receptor Plug Domain BF4248 PF07980 SusD family BF4248 PF14322 Starch-binding associating with outer membrane BF4249 PF02018 Carbohydrate binding domain BF4249 PF00722 Glycosyl hydrolases family 16 BF4250 PF07691 PA14 domain BF4250 PF02838 Glycosyl hydrolase family 20, domain 2 BF4250 PF00728 Glycosyl hydrolase family 20, catalytic domain BF4253 PF01301 Glycosyl hydrolases family 35 BF4254 PF00593 TonB dependent receptor BF4254 PF07715 TonB-dependent Receptor Plug Domain BF4261 PF01348 Type II intron maturase BF4261 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF4264 PF00665 Integrase core domain BF4276 PF01923 Cobalamin adenosyltransferase BF4291 PF07859 alpha/beta hydrolase fold BF4291 PF13472 GDSL-like Lipase/Acylhydrolase family BF4293 PF06580 Histidine kinase BF4293 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4293 PF07694 5TMR of 5TMR-LYT BF4294 PF00072 Response regulator receiver domain BF4294 PF04397 LytTr DNA-binding domain BF4297 PF00593 TonB dependent receptor BF4297 PF07715 TonB-dependent Receptor Plug Domain BF4300 PF00132 Bacterial transferase hexapeptide (six repeats) BF4300 PF14602 Hexapeptide repeat of succinyl-transferase BF4300 PF12464 Maltose acetyltransferase BF4301 PF00196 Bacterial regulatory proteins, luxR family BF4301 PF00072 Response regulator receiver domain BF4302 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF4302 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF4305 PF12833 Helix-turn-helix domain BF4305 PF07883 Cupin domain BF4306 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BF4306 PF02779 Transketolase, pyrimidine binding domain BF4306 PF02780 Transketolase, C-terminal domain BF4313 PF13302 Acetyltransferase (GNAT) domain BF4322 PF00483 Nucleotidyl transferase BF4322 PF01050 Mannose-6-phosphate isomerase BF4323 PF01230 HIT domain BF4324 PF03449 Transcription elongation factor, N-terminal BF4324 PF01272 Transcription elongation factor, GreA/GreB, C-term BF4326 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BF4326 PF01138 3' exoribonuclease family, domain 1 BF4326 PF00575 S1 RNA binding domain BF4326 PF00013 KH domain BF4326 PF03725 3' exoribonuclease family, domain 2 BF4329 PF00593 TonB dependent receptor BF4329 PF07715 TonB-dependent Receptor Plug Domain BF4336 PF00871 Acetokinase family BF4337 PF01515 Phosphate acetyl/butaryl transferase BF4338 PF00722 Glycosyl hydrolases family 16 BF4338 PF02018 Carbohydrate binding domain BF4339 PF17676 LD-carboxypeptidase C-terminal domain BF4339 PF02016 LD-carboxypeptidase N-terminal domain BF4340 PF04389 Peptidase family M28 BF4341 PF02657 Fe-S metabolism associated domain BF4342 PF13443 Cro/C1-type HTH DNA-binding domain BF4344 PF02517 CPBP intramembrane metalloprotease BF4346 PF06574 FAD synthetase BF4346 PF01687 Riboflavin kinase BF4347 PF13419 Haloacid dehalogenase-like hydrolase BF4348 PF00690 Cation transporter/ATPase, N-terminus BF4348 PF00689 Cation transporting ATPase, C-terminus BF4349 PF09308 LuxQ, periplasmic BF4349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4349 PF00512 His Kinase A (phospho-acceptor) domain BF4349 PF00072 Response regulator receiver domain BF4350 PF00301 Rubredoxin BF4351 PF02690 Na+/Pi-cotransporter BF4352 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF4352 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF4352 PF02824 TGS domain BF4352 PF03129 Anticodon binding domain BF4353 PF07689 KaiB domain BF4353 PF00512 His Kinase A (phospho-acceptor) domain BF4353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4360 PF00557 Metallopeptidase family M24 BF4360 PF05195 Aminopeptidase P, N-terminal domain BF4361 PF00309 Sigma-54 factor, Activator interacting domain (AID) BF4361 PF04963 Sigma-54 factor, core binding domain BF4361 PF04552 Sigma-54, DNA binding domain BF4363 PF01597 Glycine cleavage H-protein BF4364 PF00731 AIR carboxylase BF4365 PF04551 GcpE protein BF4369 PF14322 Starch-binding associating with outer membrane BF4369 PF07980 SusD family BF4370 PF07715 TonB-dependent Receptor Plug Domain BF4370 PF00593 TonB dependent receptor BF4372 PF14310 Fibronectin type III-like domain BF4372 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF4372 PF00933 Glycosyl hydrolase family 3 N terminal domain BF4374 PF03572 Peptidase family S41 BF4374 PF13180 PDZ domain BF4375 PF00294 pfkB family carbohydrate kinase BF4376 PF07944 Beta-L-arabinofuranosidase, GH127 BF4380 PF00593 TonB dependent receptor BF4380 PF07715 TonB-dependent Receptor Plug Domain BF4381 PF13426 PAS domain BF4381 PF08448 PAS fold BF4381 PF00072 Response regulator receiver domain BF4381 PF00512 His Kinase A (phospho-acceptor) domain BF4381 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4382 PF13187 4Fe-4S dicluster domain BF4382 PF04055 Radical SAM superfamily BF4383 PF02901 Pyruvate formate lyase-like BF4383 PF01228 Glycine radical BF4384 PF00083 Sugar (and other) transporter BF4385 PF01263 Aldose 1-epimerase BF4387 PF03992 Antibiotic biosynthesis monooxygenase BF4388 PF00156 Phosphoribosyl transferase domain BF4389 PF00459 Inositol monophosphatase family BF4391 PF16499 Alpha galactosidase A BF4391 PF17801 Alpha galactosidase C-terminal beta sandwich domain BF4396 PF04991 LicD family BF4397 PF00155 Aminotransferase class I and II BF4399 PF06463 Molybdenum Cofactor Synthesis C BF4399 PF04055 Radical SAM superfamily BF4403 PF01501 Glycosyl transferase family 8 BF4416 PF00293 NUDIX domain BF4416 PF09297 NADH pyrophosphatase zinc ribbon domain BF4419 PF13368 Topoisomerase C-terminal repeat BF4419 PF01131 DNA topoisomerase BF4419 PF01751 Toprim domain BF4421 PF05746 DALR anticodon binding domain BF4421 PF03485 Arginyl tRNA synthetase N terminal domain BF4421 PF00750 tRNA synthetases class I (R) BF4422 PF00216 Bacterial DNA-binding protein BF4428 PF02355 Protein export membrane protein BF4428 PF07549 SecD/SecF GG Motif BF4429 PF00216 Bacterial DNA-binding protein BF4437 PF12833 Helix-turn-helix domain BF4440 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BF4440 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BF4440 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BF4441 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF4444 PF03009 Glycerophosphoryl diester phosphodiesterase family BF4446 PF01293 Phosphoenolpyruvate carboxykinase BF4448 PF07715 TonB-dependent Receptor Plug Domain BF4448 PF00593 TonB dependent receptor BF4451 PF07715 TonB-dependent Receptor Plug Domain BF4451 PF00593 TonB dependent receptor BF4454 PF13229 Right handed beta helix region BF4460 PF00593 TonB dependent receptor BF4460 PF07715 TonB-dependent Receptor Plug Domain BF4463 PF00679 Elongation factor G C-terminus BF4463 PF14492 Elongation Factor G, domain II BF4463 PF00009 Elongation factor Tu GTP binding domain BF4463 PF03144 Elongation factor Tu domain 2 BF4464 PF00312 Ribosomal protein S15 BF4466 PF00501 AMP-binding enzyme BF4466 PF13193 AMP-binding enzyme C-terminal domain BF4467 PF00512 His Kinase A (phospho-acceptor) domain BF4467 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4467 PF00672 HAMP domain BF4467 PF00072 Response regulator receiver domain BF4467 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BF4467 PF01627 Hpt domain BF4468 PF05221 S-adenosyl-L-homocysteine hydrolase BF4468 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BF4472 PF00884 Sulfatase BF4472 PF16385 Domain of unknown function BF4474 PF07715 TonB-dependent Receptor Plug Domain BF4474 PF00593 TonB dependent receptor BF4478 PF12704 MacB-like periplasmic core domain BF4478 PF02687 FtsX-like permease family BF4479 PF02033 Ribosome-binding factor A BF4481 PF01596 O-methyltransferase BF4482 PF02887 Pyruvate kinase, alpha/beta domain BF4482 PF00224 Pyruvate kinase, barrel domain BF4483 PF01220 Dehydroquinase class II BF4484 PF02899 Phage integrase, N-terminal SAM-like domain BF4484 PF00589 Phage integrase family BF4486 PF00578 AhpC/TSA family BF4487 PF13335 Magnesium chelatase, subunit ChlI C-terminal BF4487 PF01078 Magnesium chelatase, subunit ChlI BF4491 PF07495 Y_Y_Y domain BF4491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4491 PF00512 His Kinase A (phospho-acceptor) domain BF4491 PF12833 Helix-turn-helix domain BF4491 PF00072 Response regulator receiver domain BF4491 PF07494 Two component regulator propeller BF4492 PF04055 Radical SAM superfamily BF4492 PF13186 Iron-sulfur cluster-binding domain BF4494 PF13380 CoA binding domain BF4494 PF13607 Succinyl-CoA ligase like flavodoxin domain BF4503 PF08264 Anticodon-binding domain of tRNA BF4503 PF09334 tRNA synthetases class I (M) BF4503 PF01588 Putative tRNA binding domain BF4505 PF13439 Glycosyltransferase Family 4 BF4505 PF00534 Glycosyl transferases group 1 BF4509 PF02350 UDP-N-acetylglucosamine 2-epimerase BF4510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF4510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF4510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF4511 PF13439 Glycosyltransferase Family 4 BF4511 PF00534 Glycosyl transferases group 1 BF4512 PF00535 Glycosyl transferase family 2 BF4513 PF02146 Sir2 family BF4514 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BF4514 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF4515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF4515 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BF4516 PF13404 AsnC-type helix-turn-helix domain BF4516 PF01037 Lrp/AsnC ligand binding domain BF4518 PF00072 Response regulator receiver domain BF4518 PF04397 LytTr DNA-binding domain BF4519 PF06580 Histidine kinase BF4519 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4519 PF07694 5TMR of 5TMR-LYT BF4521 PF00873 AcrB/AcrD/AcrF family BF4527 PF07715 TonB-dependent Receptor Plug Domain BF4527 PF00593 TonB dependent receptor BF4529 PF00083 Sugar (and other) transporter BF4536 PF07495 Y_Y_Y domain BF4536 PF12833 Helix-turn-helix domain BF4536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4536 PF07494 Two component regulator propeller BF4536 PF00072 Response regulator receiver domain BF4536 PF00512 His Kinase A (phospho-acceptor) domain BF4537 PF00251 Glycosyl hydrolases family 32 N-terminal domain BF4537 PF08244 Glycosyl hydrolases family 32 C terminal BF4543 PF01699 Sodium/calcium exchanger protein BF4545 PF00204 DNA gyrase B BF4545 PF01751 Toprim domain BF4545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF4545 PF00986 DNA gyrase B subunit, carboxyl terminus BF4546 PF01467 Cytidylyltransferase-like BF4547 PF01471 Putative peptidoglycan binding domain BF4547 PF17820 PDZ domain BF4547 PF03572 Peptidase family S41 BF4548 PF01569 PAP2 superfamily BF4552 PF02910 Fumarate reductase flavoprotein C-term BF4552 PF00890 FAD binding domain BF4553 PF13085 2Fe-2S iron-sulfur cluster binding domain BF4556 PF00593 TonB dependent receptor BF4556 PF07715 TonB-dependent Receptor Plug Domain BF4559 PF17145 Domain of unknown function (DUF5119) BF4562 PF02481 DNA recombination-mediator protein A BF4562 PF17782 DprA winged helix domain BF4564 PF01136 Peptidase family U32 BF4566 PF01207 Dihydrouridine synthase (Dus) BF4568 PF01370 NAD dependent epimerase/dehydratase family BF4569 PF16916 Dimerisation domain of Zinc Transporter BF4569 PF01545 Cation efflux family BF4570 PF00773 RNB domain BF4570 PF17876 Cold shock domain BF4570 PF08206 Ribonuclease B OB domain BF4570 PF00575 S1 RNA binding domain BF4576 PF00291 Pyridoxal-phosphate dependent enzyme BF4579 PF01926 50S ribosome-binding GTPase BF4579 PF06071 Protein of unknown function (DUF933) BF4580 PF02558 Ketopantoate reductase PanE/ApbA BF4580 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF4581 PF01790 Prolipoprotein diacylglyceryl transferase BF4583 PF01624 MutS domain I BF4583 PF05188 MutS domain II BF4583 PF00488 MutS domain V BF4583 PF05190 MutS family domain IV BF4583 PF05192 MutS domain III BF4586 PF09334 tRNA synthetases class I (M) BF4586 PF13603 Leucyl-tRNA synthetase, Domain 2 BF4586 PF08264 Anticodon-binding domain of tRNA BF4587 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF4587 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF4588 PF01725 Ham1 family BF4590 PF02445 Quinolinate synthetase A protein BFp0018 PF00664 ABC transporter transmembrane region BFp0018 PF03412 Peptidase C39 family BFp0018 PF00005 ABC transporter