BF0012	SM00382	ATPases associated with a variety of cellular activities
BF0028	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF0029	SM00812	Alpha-L-fucosidase
BF0032	SM00342	helix_turn_helix, arabinose operon control protein
BF0035	SM00862	Transcriptional regulatory protein, C terminal
BF0066	SM01234	BF0066
BF0079	SM00382	ATPases associated with a variety of cellular activities
BF0084	SM01209	BF0084
BF0084	SM01210	BF0084
BF0086	SM00981	BF0086
BF0088	SM00028	Tetratricopeptide repeats
BF0089	SM00448	cheY-homologous receiver domain
BF0089	SM00850	LytTr DNA-binding domain
BF0091	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BF0091	SM00474	3'-5' exonuclease
BF0091	SM00475	5'-3' exonuclease
BF0091	SM00482	DNA polymerase A domain
BF0095	SM01133	BF0095
BF0098	SM00465	GIY-YIG type nucleases (URI domain)
BF0100	SM01228	BF0100
BF0102	SM00028	Tetratricopeptide repeats
BF0138	SM00382	ATPases associated with a variety of cellular activities
BF0138	SM00448	cheY-homologous receiver domain
BF0139	SM00448	cheY-homologous receiver domain
BF0140	SM00387	Histidine kinase-like ATPases
BF0140	SM00388	His Kinase A (phosphoacceptor) domain
BF0141	SM00838	Elongation factor G C-terminus
BF0141	SM00889	Elongation factor G, domain IV
BF0142	SM00487	DEAD-like helicases superfamily
BF0142	SM00490	helicase superfamily c-terminal domain
BF0144	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BF0144	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BF0144	SM00493	BF0144
BF0163	SM00382	ATPases associated with a variety of cellular activities
BF0169	SM00487	DEAD-like helicases superfamily
BF0169	SM00490	helicase superfamily c-terminal domain
BF0178	SM00822	BF0178
BF0192	SM01038	Beta galactosidase small chain
BF0196	SM00840	BF0196
BF0199	SM00448	cheY-homologous receiver domain
BF0199	SM00862	Transcriptional regulatory protein, C terminal
BF0200	SM00387	Histidine kinase-like ATPases
BF0209	SM00448	cheY-homologous receiver domain
BF0209	SM00862	Transcriptional regulatory protein, C terminal
BF0210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF0210	SM00387	Histidine kinase-like ATPases
BF0210	SM00388	His Kinase A (phosphoacceptor) domain
BF0211	SM00831	Cation transporter/ATPase, N-terminus
BF0214	SM00487	DEAD-like helicases superfamily
BF0214	SM00490	helicase superfamily c-terminal domain
BF0218	SM00358	Double-stranded RNA binding motif
BF0218	SM00535	Ribonuclease III family
BF0219	SM00825	Beta-ketoacyl synthase
BF0220	SM00823	Phosphopantetheine attachment site
BF0226	SM00672	Putative lipopolysaccharide-modifying enzyme.
BF0229	SM00382	ATPases associated with a variety of cellular activities
BF0236	SM00671	Sel1-like repeats.
BF0252	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF0255	SM01007	Class II Aldolase and Adducin N-terminal domain
BF0267	SM00382	ATPases associated with a variety of cellular activities
BF0273	SM00965	Secretin and TonB N terminus short domain
BF0293	SM00387	Histidine kinase-like ATPases
BF0293	SM00388	His Kinase A (phosphoacceptor) domain
BF0294	SM00028	Tetratricopeptide repeats
BF0294	SM00388	His Kinase A (phosphoacceptor) domain
BF0297	SM00387	Histidine kinase-like ATPases
BF0297	SM00433	TopoisomeraseII
BF0302	SM00864	Tubulin/FtsZ family, GTPase domain
BF0302	SM00865	Tubulin/FtsZ family, C-terminal domain
BF0303	SM00842	Cell division protein FtsA
BF0311	SM00740	BF0311
BF0323	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF0325	SM00028	Tetratricopeptide repeats
BF0328	SM00342	helix_turn_helix, arabinose operon control protein
BF0328	SM00387	Histidine kinase-like ATPases
BF0328	SM00388	His Kinase A (phosphoacceptor) domain
BF0328	SM00448	cheY-homologous receiver domain
BF0330	SM00758	BF0330
BF0330	SM01217	BF0330
BF0339	SM00872	Alpha mannosidase, middle domain
BF0351	SM01149	BF0351
BF0354	SM00560	LamG-like jellyroll fold domain
BF0354	SM00606	Cellulose Binding Domain Type IV
BF0370	SM00813	Alpha-L-arabinofuranosidase C-terminus
BF0374	SM00937	BF0374
BF0376	SM01118	BF0376
BF0388	SM00342	helix_turn_helix, arabinose operon control protein
BF0388	SM00387	Histidine kinase-like ATPases
BF0388	SM00388	His Kinase A (phosphoacceptor) domain
BF0388	SM00448	cheY-homologous receiver domain
BF0392	SM01217	BF0392
BF0397	SM00530	Helix-turn-helix XRE-family like proteins 
BF0409	SM00245	tail specific protease
BF0411	SM00434	DNA Topoisomerase IV
BF0417	SM00028	Tetratricopeptide repeats
BF0424	SM00419	helix_turn_helix, cAMP Regulatory protein
BF0435	SM00564	beta-propeller repeat
BF0444	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BF0447	SM00382	ATPases associated with a variety of cellular activities
BF0456	SM00028	Tetratricopeptide repeats
BF0456	SM00387	Histidine kinase-like ATPases
BF0456	SM00388	His Kinase A (phosphoacceptor) domain
BF0480	SM00098	Alkaline phosphatase homologues
BF0486	SM00841	Elongation factor P, C-terminal
BF0486	SM01185	BF0486
BF0488	SM00740	BF0488
BF0489	SM00363	S4 RNA-binding domain
BF0493	SM00450	Rhodanese Homology Domain
BF0499	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BF0502	SM00935	Outer membrane protein (OmpH-like)
BF0503	SM00935	Outer membrane protein (OmpH-like)
BF0513	SM00857	Resolvase, N terminal domain
BF0515	SM00382	ATPases associated with a variety of cellular activities
BF0516	SM00530	Helix-turn-helix XRE-family like proteins 
BF0521	SM00530	Helix-turn-helix XRE-family like proteins 
BF0529	SM00530	Helix-turn-helix XRE-family like proteins 
BF0532	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BF0538	SM00387	Histidine kinase-like ATPases
BF0538	SM00388	His Kinase A (phosphoacceptor) domain
BF0548	SM00534	ATPase domain of DNA mismatch repair MUTS family
BF0553	SM00965	Secretin and TonB N terminus short domain
BF0561	SM00382	ATPases associated with a variety of cellular activities
BF0574	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF0575	SM00450	Rhodanese Homology Domain
BF0577	SM00382	ATPases associated with a variety of cellular activities
BF0577	SM00448	cheY-homologous receiver domain
BF0583	SM00091	PAS domain
BF0583	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF0583	SM00387	Histidine kinase-like ATPases
BF0583	SM00388	His Kinase A (phosphoacceptor) domain
BF0586	SM00965	Secretin and TonB N terminus short domain
BF0602	SM00421	helix_turn_helix, Lux Regulon
BF0605	SM00382	ATPases associated with a variety of cellular activities
BF0607	SM00870	BF0607
BF0621	SM00965	Secretin and TonB N terminus short domain
BF0630	SM00342	helix_turn_helix, arabinose operon control protein
BF0634	SM00507	HNH nucleases
BF0636	SM00382	ATPases associated with a variety of cellular activities
BF0650	SM01266	BF0650
BF0652	SM00342	helix_turn_helix, arabinose operon control protein
BF0690	SM00287	Bacterial SH3 domain homologues
BF0712	SM00481	DNA polymerase alpha chain like domain
BF0721	SM00382	ATPases associated with a variety of cellular activities
BF0735	SM00812	Alpha-L-fucosidase
BF0736	SM01038	Beta galactosidase small chain
BF0738	SM00342	helix_turn_helix, arabinose operon control protein
BF0739	SM00387	Histidine kinase-like ATPases
BF0739	SM00388	His Kinase A (phosphoacceptor) domain
BF0746	SM00155	Phospholipase D. Active site motifs.
BF0752	SM00965	Secretin and TonB N terminus short domain
BF0760	SM00342	helix_turn_helix, arabinose operon control protein
BF0761	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BF0763	SM00422	helix_turn_helix, mercury resistance
BF0764	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF0764	SM00954	Region found in RelA / SpoT proteins
BF0765	SM00257	Lysin motif
BF0767	SM00470	ParB-like nuclease domain
BF0774	SM00382	ATPases associated with a variety of cellular activities
BF0777	SM00116	Domain in cystathionine beta-synthase and other proteins.
BF0777	SM00924	MgtE intracellular N domain
BF0778	SM00650	Ribosomal RNA adenine dimethylases
BF0786	SM01360	BF0786
BF0791	SM00382	ATPases associated with a variety of cellular activities
BF0794	SM00342	helix_turn_helix, arabinose operon control protein
BF0797	SM00530	Helix-turn-helix XRE-family like proteins 
BF0826	SM00849	Metallo-beta-lactamase superfamily
BF0832	SM01217	BF0832
BF0838	SM00606	Cellulose Binding Domain Type IV
BF0841	SM01217	BF0841
BF0843	SM01018	B12 binding domain
BF0859	SM00387	Histidine kinase-like ATPases
BF0859	SM00388	His Kinase A (phosphoacceptor) domain
BF0873	SM00861	Transketolase, pyrimidine binding domain
BF0880	SM00812	Alpha-L-fucosidase
BF0884	SM00342	helix_turn_helix, arabinose operon control protein
BF0884	SM00387	Histidine kinase-like ATPases
BF0884	SM00388	His Kinase A (phosphoacceptor) domain
BF0884	SM00448	cheY-homologous receiver domain
BF0886	SM00812	Alpha-L-fucosidase
BF0887	SM01290	BF0887
BF0892	SM01005	Alanine racemase, C-terminal domain
BF0900	SM00387	Histidine kinase-like ATPases
BF0908	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF0909	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BF0910	SM00937	BF0910
BF0921	SM00244	prohibitin homologues
BF0929	SM01038	Beta galactosidase small chain
BF0937	SM00028	Tetratricopeptide repeats
BF0939	SM00342	helix_turn_helix, arabinose operon control protein
BF0940	SM00758	BF0940
BF0940	SM01217	BF0940
BF0944	SM00965	Secretin and TonB N terminus short domain
BF0946	SM00965	Secretin and TonB N terminus short domain
BF0948	SM00965	Secretin and TonB N terminus short domain
BF0950	SM00421	helix_turn_helix, Lux Regulon
BF0952	SM00965	Secretin and TonB N terminus short domain
BF0957	SM00028	Tetratricopeptide repeats
BF0963	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF0963	SM00245	tail specific protease
BF0967	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BF0976	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF0980	SM00850	LytTr DNA-binding domain
BF0982	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF0983	SM00849	Metallo-beta-lactamase superfamily
BF0988	SM00028	Tetratricopeptide repeats
BF0988	SM00382	ATPases associated with a variety of cellular activities
BF1016	SM00382	ATPases associated with a variety of cellular activities
BF1020	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BF1030	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BF1031	SM00474	3'-5' exonuclease
BF1033	SM00843	BF1033
BF1037	SM00100	Cyclic nucleotide-monophosphate binding domain
BF1037	SM00419	helix_turn_helix, cAMP Regulatory protein
BF1040	SM01230	BF1040
BF1043	SM00316	Ribosomal protein S1-like RNA-binding domain
BF1051	SM00387	Histidine kinase-like ATPases
BF1051	SM00388	His Kinase A (phosphoacceptor) domain
BF1056	SM00965	Secretin and TonB N terminus short domain
BF1068	SM00957	SecA DEAD-like domain
BF1068	SM00958	SecA preprotein cross-linking domain
BF1076	SM01091	Transporter associated domain
BF1081	SM00382	ATPases associated with a variety of cellular activities
BF1099	SM00984	UDP binding domain
BF1123	SM00873	B3/4 domain
BF1130	SM00342	helix_turn_helix, arabinose operon control protein
BF1133	SM00460	Transglutaminase/protease-like homologues
BF1147	SM00530	Helix-turn-helix XRE-family like proteins 
BF1159	SM00530	Helix-turn-helix XRE-family like proteins 
BF1172	SM00387	Histidine kinase-like ATPases
BF1172	SM00388	His Kinase A (phosphoacceptor) domain
BF1172	SM00448	cheY-homologous receiver domain
BF1174	SM00479	BF1174
BF1188	SM01192	BF1188
BF1188	SM01193	BF1188
BF1195	SM00363	S4 RNA-binding domain
BF1198	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
BF1200	SM01323	BF1200
BF1205	SM00382	ATPases associated with a variety of cellular activities
BF1205	SM01086	C-terminal, D2-small domain, of ClpB protein
BF1213	SM00382	ATPases associated with a variety of cellular activities
BF1234	SM00400	zinc finger
BF1239	SM01252	BF1239
BF1241	SM00518	AP endonuclease family 2
BF1245	SM01060	BF1245
BF1267	SM00463	Small MutS-related domain
BF1267	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BF1267	SM00534	ATPase domain of DNA mismatch repair MUTS family
BF1294	SM00387	Histidine kinase-like ATPases
BF1294	SM00388	His Kinase A (phosphoacceptor) domain
BF1319	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BF1326	SM00965	Secretin and TonB N terminus short domain
BF1373	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BF1373	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BF1373	SM00493	BF1373
BF1379	SM00342	helix_turn_helix, arabinose operon control protein
BF1385	SM00248	ankyrin repeats
BF1399	SM01091	Transporter associated domain
BF1408	SM00421	helix_turn_helix, Lux Regulon
BF1415	SM01359	BF1415
BF1415	SM01360	BF1415
BF1416	SM00977	TilS substrate C-terminal domain
BF1417	SM00899	BF1417
BF1441	SM00984	UDP binding domain
BF1455	SM00028	Tetratricopeptide repeats
BF1455	SM00342	helix_turn_helix, arabinose operon control protein
BF1475	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BF1475	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BF1482	SM00965	Secretin and TonB N terminus short domain
BF1490	SM00382	ATPases associated with a variety of cellular activities
BF1493	SM00342	helix_turn_helix, arabinose operon control protein
BF1495	SM00047	Lysozyme subfamily 2
BF1495	SM00257	Lysin motif
BF1504	SM00342	helix_turn_helix, arabinose operon control protein
BF1505	SM00382	ATPases associated with a variety of cellular activities
BF1508	SM00382	ATPases associated with a variety of cellular activities
BF1512	SM00387	Histidine kinase-like ATPases
BF1512	SM00388	His Kinase A (phosphoacceptor) domain
BF1515	SM00382	ATPases associated with a variety of cellular activities
BF1515	SM00448	cheY-homologous receiver domain
BF1516	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF1516	SM00387	Histidine kinase-like ATPases
BF1552	SM00316	Ribosomal protein S1-like RNA-binding domain
BF1553	SM00411	bacterial (prokaryotic) histone like domain
BF1554	SM00478	endonuclease III
BF1557	SM01091	Transporter associated domain
BF1575	SM00387	Histidine kinase-like ATPases
BF1575	SM00388	His Kinase A (phosphoacceptor) domain
BF1576	SM00448	cheY-homologous receiver domain
BF1576	SM00862	Transcriptional regulatory protein, C terminal
BF1582	SM00382	ATPases associated with a variety of cellular activities
BF1592	SM00387	Histidine kinase-like ATPases
BF1593	SM00382	ATPases associated with a variety of cellular activities
BF1593	SM00448	cheY-homologous receiver domain
BF1597	SM00382	ATPases associated with a variety of cellular activities
BF1603	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF1603	SM00876	Biotin and Thiamin Synthesis associated domain
BF1612	SM00878	Biotin carboxylase C-terminal domain
BF1622	SM00861	Transketolase, pyrimidine binding domain
BF1634	SM00457	membrane-attack complex / perforin
BF1643	SM00062	Bacterial periplasmic substrate-binding proteins
BF1650	SM00028	Tetratricopeptide repeats
BF1652	SM00861	Transketolase, pyrimidine binding domain
BF1660	SM00487	DEAD-like helicases superfamily
BF1660	SM00490	helicase superfamily c-terminal domain
BF1683	SM00732	Likely ribonuclease with RNase H fold.
BF1686	SM00028	Tetratricopeptide repeats
BF1687	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BF1697	SM00477	DNA/RNA non-specific endonuclease
BF1697	SM00892	DNA/RNA non-specific endonuclease
BF1706	SM01130	BF1706
BF1720	SM00812	Alpha-L-fucosidase
BF1742	SM00271	DnaJ molecular chaperone homology domain
BF1744	SM00382	ATPases associated with a variety of cellular activities
BF1750	SM00148	Phospholipase C, catalytic domain (part); domain X
BF1754	SM00758	BF1754
BF1756	SM00098	Alkaline phosphatase homologues
BF1758	SM01149	BF1758
BF1759	SM00758	BF1759
BF1760	SM00342	helix_turn_helix, arabinose operon control protein
BF1761	SM00732	Likely ribonuclease with RNase H fold.
BF1766	SM00421	helix_turn_helix, Lux Regulon
BF1806	SM00316	Ribosomal protein S1-like RNA-binding domain
BF1806	SM00732	Likely ribonuclease with RNase H fold.
BF1807	SM00387	Histidine kinase-like ATPases
BF1807	SM00388	His Kinase A (phosphoacceptor) domain
BF1809	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BF1839	SM00984	UDP binding domain
BF1853	SM01350	BF1853
BF1868	SM00448	cheY-homologous receiver domain
BF1868	SM00850	LytTr DNA-binding domain
BF1871	SM00382	ATPases associated with a variety of cellular activities
BF1877	SM00773	Proposed nucleic acid binding domain
BF1880	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF1883	SM00382	ATPases associated with a variety of cellular activities
BF1900	SM00965	Secretin and TonB N terminus short domain
BF1914	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF1920	SM00342	helix_turn_helix, arabinose operon control protein
BF1930	SM00060	Fibronectin type 3 domain
BF1935	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
BF1954	SM00382	ATPases associated with a variety of cellular activities
BF1954	SM01086	C-terminal, D2-small domain, of ClpB protein
BF1980	SM00487	DEAD-like helicases superfamily
BF1980	SM00490	helicase superfamily c-terminal domain
BF1981	SM00530	Helix-turn-helix XRE-family like proteins 
BF1990	SM00382	ATPases associated with a variety of cellular activities
BF1994	SM00387	Histidine kinase-like ATPases
BF1994	SM00388	His Kinase A (phosphoacceptor) domain
BF1994	SM00448	cheY-homologous receiver domain
BF2013	SM00900	BF2013
BF2017	SM00487	DEAD-like helicases superfamily
BF2017	SM00490	helicase superfamily c-terminal domain
BF2026	SM00849	Metallo-beta-lactamase superfamily
BF2033	SM00342	helix_turn_helix, arabinose operon control protein
BF2040	SM00387	Histidine kinase-like ATPases
BF2041	SM00382	ATPases associated with a variety of cellular activities
BF2041	SM00448	cheY-homologous receiver domain
BF2046	SM00382	ATPases associated with a variety of cellular activities
BF2053	SM00493	BF2053
BF2070	SM00342	helix_turn_helix, arabinose operon control protein
BF2074	SM00903	Flavin reductase like domain
BF2095	SM00245	tail specific protease
BF2111	SM00382	ATPases associated with a variety of cellular activities
BF2112	SM00382	ATPases associated with a variety of cellular activities
BF2114	SM00387	Histidine kinase-like ATPases
BF2114	SM00388	His Kinase A (phosphoacceptor) domain
BF2115	SM00342	helix_turn_helix, arabinose operon control protein
BF2117	SM00344	helix_turn_helix ASNC type
BF2119	SM00342	helix_turn_helix, arabinose operon control protein
BF2133	SM00387	Histidine kinase-like ATPases
BF2133	SM00448	cheY-homologous receiver domain
BF2141	SM00382	ATPases associated with a variety of cellular activities
BF2148	SM00419	helix_turn_helix, cAMP Regulatory protein
BF2149	SM00387	Histidine kinase-like ATPases
BF2150	SM00382	ATPases associated with a variety of cellular activities
BF2150	SM00448	cheY-homologous receiver domain
BF2154	SM00382	ATPases associated with a variety of cellular activities
BF2156	SM00382	ATPases associated with a variety of cellular activities
BF2166	SM00954	Region found in RelA / SpoT proteins
BF2168	SM00360	RNA recognition motif
BF2171	SM00382	ATPases associated with a variety of cellular activities
BF2180	SM00341	Helicase and RNase D C-terminal
BF2180	SM00382	ATPases associated with a variety of cellular activities
BF2185	SM00448	cheY-homologous receiver domain
BF2185	SM00862	Transcriptional regulatory protein, C terminal
BF2186	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF2186	SM00387	Histidine kinase-like ATPases
BF2186	SM00388	His Kinase A (phosphoacceptor) domain
BF2194	SM00382	ATPases associated with a variety of cellular activities
BF2198	SM00448	cheY-homologous receiver domain
BF2198	SM00862	Transcriptional regulatory protein, C terminal
BF2199	SM00387	Histidine kinase-like ATPases
BF2199	SM00388	His Kinase A (phosphoacceptor) domain
BF2201	SM00387	Histidine kinase-like ATPases
BF2201	SM00388	His Kinase A (phosphoacceptor) domain
BF2206	SM00903	Flavin reductase like domain
BF2222	SM00855	Phosphoglycerate mutase family
BF2230	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
BF2231	SM01400	BF2231
BF2232	SM00387	Histidine kinase-like ATPases
BF2233	SM00448	cheY-homologous receiver domain
BF2238	SM00028	Tetratricopeptide repeats
BF2243	SM00642	Alpha-amylase domain
BF2244	SM00642	Alpha-amylase domain
BF2249	SM01230	BF2249
BF2252	SM00014	Acid phosphatase homologues
BF2256	SM00881	CoA binding domain
BF2258	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BF2267	SM00360	RNA recognition motif
BF2268	SM01235	BF2268
BF2280	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BF2291	SM00849	Metallo-beta-lactamase superfamily
BF2297	SM00984	UDP binding domain
BF2299	SM00487	DEAD-like helicases superfamily
BF2299	SM00490	helicase superfamily c-terminal domain
BF2304	SM00382	ATPases associated with a variety of cellular activities
BF2304	SM00464	Found in ATP-dependent protease La (LON)
BF2306	SM00910	BF2306
BF2364	SM00387	Histidine kinase-like ATPases
BF2365	SM00382	ATPases associated with a variety of cellular activities
BF2365	SM00448	cheY-homologous receiver domain
BF2375	SM00382	ATPases associated with a variety of cellular activities
BF2378	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BF2384	SM00382	ATPases associated with a variety of cellular activities
BF2398	SM00530	Helix-turn-helix XRE-family like proteins 
BF2403	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BF2403	SM00292	breast cancer carboxy-terminal domain
BF2403	SM00532	Ligase N family
BF2404	SM01130	BF2404
BF2405	SM01059	Chloramphenicol acetyltransferase
BF2410	SM00382	ATPases associated with a variety of cellular activities
BF2410	SM01086	C-terminal, D2-small domain, of ClpB protein
BF2411	SM00434	DNA Topoisomerase IV
BF2412	SM00028	Tetratricopeptide repeats
BF2415	SM00028	Tetratricopeptide repeats
BF2417	SM00028	Tetratricopeptide repeats
BF2418	SM00327	von Willebrand factor (vWF) type A domain
BF2419	SM00327	von Willebrand factor (vWF) type A domain
BF2421	SM00327	von Willebrand factor (vWF) type A domain
BF2423	SM00257	Lysin motif
BF2423	SM00411	bacterial (prokaryotic) histone like domain
BF2424	SM00411	bacterial (prokaryotic) histone like domain
BF2425	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF2426	SM00382	ATPases associated with a variety of cellular activities
BF2426	SM00962	SRP54-type protein, GTPase domain
BF2426	SM00963	SRP54-type protein, helical bundle domain
BF2430	SM00852	Probable molybdopterin binding domain
BF2434	SM00946	Prolyl-tRNA synthetase, C-terminal
BF2437	SM00245	tail specific protease
BF2462	SM00507	HNH nucleases
BF2488	SM00855	Phosphoglycerate mutase family
BF2501	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BF2501	SM00387	Histidine kinase-like ATPases
BF2501	SM00388	His Kinase A (phosphoacceptor) domain
BF2533	SM00876	Biotin and Thiamin Synthesis associated domain
BF2548	SM00487	DEAD-like helicases superfamily
BF2548	SM00490	helicase superfamily c-terminal domain
BF2565	SM00873	B3/4 domain
BF2565	SM00874	tRNA synthetase B5 domain
BF2565	SM00896	Ferredoxin-fold anticodon binding domain
BF2595	SM00900	BF2595
BF2613	SM00257	Lysin motif
BF2616	SM01409	BF2616
BF2620	SM00487	DEAD-like helicases superfamily
BF2620	SM00490	helicase superfamily c-terminal domain
BF2624	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BF2626	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BF2626	SM00387	Histidine kinase-like ATPases
BF2626	SM00388	His Kinase A (phosphoacceptor) domain
BF2626	SM00448	cheY-homologous receiver domain
BF2629	SM00382	ATPases associated with a variety of cellular activities
BF2633	SM00342	helix_turn_helix, arabinose operon control protein
BF2635	SM00851	MGS-like domain
BF2635	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BF2636	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
BF2658	SM00870	BF2658
BF2660	SM00448	cheY-homologous receiver domain
BF2664	SM00421	helix_turn_helix, Lux Regulon
BF2666	SM00798	AICARFT/IMPCHase bienzyme
BF2701	SM00354	helix_turn _helix lactose operon repressor
BF2705	SM00387	Histidine kinase-like ATPases
BF2705	SM00388	His Kinase A (phosphoacceptor) domain
BF2705	SM00448	cheY-homologous receiver domain
BF2708	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF2719	SM00360	RNA recognition motif
BF2723	SM00382	ATPases associated with a variety of cellular activities
BF2736	SM00448	cheY-homologous receiver domain
BF2736	SM00862	Transcriptional regulatory protein, C terminal
BF2737	SM00387	Histidine kinase-like ATPases
BF2737	SM00388	His Kinase A (phosphoacceptor) domain
BF2744	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF2745	SM00460	Transglutaminase/protease-like homologues
BF2746	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BF2754	SM00382	ATPases associated with a variety of cellular activities
BF2759	SM00028	Tetratricopeptide repeats
BF2765	SM00857	Resolvase, N terminal domain
BF2770	SM00644	BF2770
BF2770	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
BF2773	SM00942	Primase C terminal 1 (PriCT-1)
BF2775	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BF2822	SM00470	ParB-like nuclease domain
BF2835	SM00382	ATPases associated with a variety of cellular activities
BF2835	SM01086	C-terminal, D2-small domain, of ClpB protein
BF2854	SM00901	BF2854
BF2858	SM00487	DEAD-like helicases superfamily
BF2858	SM00490	helicase superfamily c-terminal domain
BF2886	SM00047	Lysozyme subfamily 2
BF2906	SM00857	Resolvase, N terminal domain
BF2943	SM00487	DEAD-like helicases superfamily
BF2945	SM00530	Helix-turn-helix XRE-family like proteins 
BF2958	SM00850	LytTr DNA-binding domain
BF2963	SM00387	Histidine kinase-like ATPases
BF2963	SM00388	His Kinase A (phosphoacceptor) domain
BF2964	SM00387	Histidine kinase-like ATPases
BF2965	SM00320	WD40 repeats
BF2968	SM00331	Sigma factor PP2C-like phosphatases
BF2968	SM00448	cheY-homologous receiver domain
BF2973	SM00670	Large family of predicted nucleotide-binding domains
BF2976	SM00028	Tetratricopeptide repeats
BF2977	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BF2980	SM00479	BF2980
BF2981	SM00480	DNA polymerase III beta subunit
BF2984	SM00849	Metallo-beta-lactamase superfamily
BF3012	SM00857	Resolvase, N terminal domain
BF3026	SM00382	ATPases associated with a variety of cellular activities
BF3051	SM00382	ATPases associated with a variety of cellular activities
BF3060	SM00342	helix_turn_helix, arabinose operon control protein
BF3062	SM00342	helix_turn_helix, arabinose operon control protein
BF3063	SM00710	Parallel beta-helix repeats
BF3064	SM01217	BF3064
BF3067	SM01018	B12 binding domain
BF3069	SM01217	BF3069
BF3071	SM00965	Secretin and TonB N terminus short domain
BF3083	SM00226	Low molecular weight phosphatase family
BF3091	SM00342	helix_turn_helix, arabinose operon control protein
BF3094	SM00342	helix_turn_helix, arabinose operon control protein
BF3094	SM00871	Bacterial transcription activator, effector binding domain
BF3098	SM00641	Glycosyl hydrolases family 25
BF3101	SM01276	BF3101
BF3113	SM00563	Phosphate acyltransferases
BF3118	SM00060	Fibronectin type 3 domain
BF3126	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF3127	SM00487	DEAD-like helicases superfamily
BF3127	SM00490	helicase superfamily c-terminal domain
BF3127	SM00982	BF3127
BF3127	SM01058	CarD-like/TRCF domain
BF3136	SM00060	Fibronectin type 3 domain
BF3144	SM00382	ATPases associated with a variety of cellular activities
BF3145	SM00382	ATPases associated with a variety of cellular activities
BF3148	SM00563	Phosphate acyltransferases
BF3168	SM00028	Tetratricopeptide repeats
BF3194	SM00886	Stress responsive A/B Barrel Domain
BF3196	SM00062	Bacterial periplasmic substrate-binding proteins
BF3199	SM01018	B12 binding domain
BF3209	SM00642	Alpha-amylase domain
BF3213	SM00357	Cold shock protein domain
BF3213	SM00382	ATPases associated with a variety of cellular activities
BF3213	SM00959	Rho termination factor, N-terminal domain
BF3214	SM00387	Histidine kinase-like ATPases
BF3214	SM00388	His Kinase A (phosphoacceptor) domain
BF3215	SM00388	His Kinase A (phosphoacceptor) domain
BF3217	SM00382	ATPases associated with a variety of cellular activities
BF3217	SM00962	SRP54-type protein, GTPase domain
BF3217	SM00963	SRP54-type protein, helical bundle domain
BF3221	SM00854	Bacterial capsule synthesis protein PGA_cap
BF3224	SM00382	ATPases associated with a variety of cellular activities
BF3231	SM00382	ATPases associated with a variety of cellular activities
BF3236	SM00850	LytTr DNA-binding domain
BF3237	SM00935	Outer membrane protein (OmpH-like)
BF3243	SM00812	Alpha-L-fucosidase
BF3244	SM01038	Beta galactosidase small chain
BF3250	SM00342	helix_turn_helix, arabinose operon control protein
BF3251	SM01133	BF3251
BF3252	SM00855	Phosphoglycerate mutase family
BF3253	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF3253	SM00710	Parallel beta-helix repeats
BF3254	SM00382	ATPases associated with a variety of cellular activities
BF3261	SM00642	Alpha-amylase domain
BF3268	SM00478	endonuclease III
BF3268	SM00525	BF3268
BF3273	SM00028	Tetratricopeptide repeats
BF3286	SM00947	Carbonic anhydrase
BF3293	SM00028	Tetratricopeptide repeats
BF3294	SM00028	Tetratricopeptide repeats
BF3295	SM00642	Alpha-amylase domain
BF3296	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF3304	SM00642	Alpha-amylase domain
BF3308	SM00354	helix_turn _helix lactose operon repressor
BF3315	SM01211	BF3315
BF3316	SM00342	helix_turn_helix, arabinose operon control protein
BF3316	SM00387	Histidine kinase-like ATPases
BF3316	SM00388	His Kinase A (phosphoacceptor) domain
BF3316	SM00448	cheY-homologous receiver domain
BF3326	SM00387	Histidine kinase-like ATPases
BF3326	SM00388	His Kinase A (phosphoacceptor) domain
BF3330	SM00382	ATPases associated with a variety of cellular activities
BF3332	SM00890	Domain of unknown function
BF3336	SM00116	Domain in cystathionine beta-synthase and other proteins.
BF3336	SM00382	ATPases associated with a variety of cellular activities
BF3339	SM00342	helix_turn_helix, arabinose operon control protein
BF3339	SM00387	Histidine kinase-like ATPases
BF3339	SM00388	His Kinase A (phosphoacceptor) domain
BF3339	SM00448	cheY-homologous receiver domain
BF3342	SM00640	Glycosyl hydrolases family 32
BF3344	SM00530	Helix-turn-helix XRE-family like proteins 
BF3356	SM00612	BF3356
BF3363	SM00342	helix_turn_helix, arabinose operon control protein
BF3365	SM00448	cheY-homologous receiver domain
BF3365	SM00850	LytTr DNA-binding domain
BF3371	SM00812	Alpha-L-fucosidase
BF3372	SM00893	Electron transfer flavoprotein domain
BF3373	SM00893	Electron transfer flavoprotein domain
BF3375	SM01038	Beta galactosidase small chain
BF3377	SM00271	DnaJ molecular chaperone homology domain
BF3378	SM00387	Histidine kinase-like ATPases
BF3378	SM00388	His Kinase A (phosphoacceptor) domain
BF3396	SM00883	Chaperonin 10 Kd subunit
BF3420	SM00812	Alpha-L-fucosidase
BF3421	SM00788	Adenylosuccinate synthetase
BF3426	SM00342	helix_turn_helix, arabinose operon control protein
BF3427	SM00341	Helicase and RNase D C-terminal
BF3427	SM00487	DEAD-like helicases superfamily
BF3427	SM00490	helicase superfamily c-terminal domain
BF3427	SM00956	BF3427
BF3429	SM00028	Tetratricopeptide repeats
BF3432	SM00014	Acid phosphatase homologues
BF3442	SM01259	BF3442
BF3444	SM01329	BF3444
BF3445	SM00917	LeuA allosteric (dimerisation) domain
BF3448	SM00917	LeuA allosteric (dimerisation) domain
BF3479	SM00871	Bacterial transcription activator, effector binding domain
BF3480	SM00342	helix_turn_helix, arabinose operon control protein
BF3480	SM00871	Bacterial transcription activator, effector binding domain
BF3488	SM01266	BF3488
BF3490	SM00342	helix_turn_helix, arabinose operon control protein
BF3491	SM00342	helix_turn_helix, arabinose operon control protein
BF3491	SM00387	Histidine kinase-like ATPases
BF3491	SM00388	His Kinase A (phosphoacceptor) domain
BF3491	SM00448	cheY-homologous receiver domain
BF3503	SM00986	Uracil DNA glycosylase superfamily
BF3503	SM00987	UreE urease accessory protein, C-terminal domain 
BF3504	SM00342	helix_turn_helix, arabinose operon control protein
BF3504	SM00871	Bacterial transcription activator, effector binding domain
BF3521	SM00342	helix_turn_helix, arabinose operon control protein
BF3523	SM00342	helix_turn_helix, arabinose operon control protein
BF3529	SM00878	Biotin carboxylase C-terminal domain
BF3536	SM01240	BF3536
BF3539	SM00342	helix_turn_helix, arabinose operon control protein
BF3546	SM00646	BF3546
BF3586	SM00563	Phosphate acyltransferases
BF3589	SM00327	von Willebrand factor (vWF) type A domain
BF3602	SM00322	K homology RNA-binding domain
BF3602	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF3605	SM00919	Malic enzyme, NAD binding domain
BF3605	SM01274	BF3605
BF3607	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BF3611	SM00965	Secretin and TonB N terminus short domain
BF3617	SM00530	Helix-turn-helix XRE-family like proteins 
BF3635	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BF3640	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF3643	SM00357	Cold shock protein domain
BF3660	SM00248	ankyrin repeats
BF3686	SM00530	Helix-turn-helix XRE-family like proteins 
BF3689	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BF3707	SM00072	Guanylate kinase homologues.
BF3716	SM00448	cheY-homologous receiver domain
BF3717	SM00382	ATPases associated with a variety of cellular activities
BF3733	SM00155	Phospholipase D. Active site motifs.
BF3736	SM00344	helix_turn_helix ASNC type
BF3754	SM01329	BF3754
BF3769	SM00342	helix_turn_helix, arabinose operon control protein
BF3779	SM00564	beta-propeller repeat
BF3789	SM00965	Secretin and TonB N terminus short domain
BF3798	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BF3798	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BF3798	SM00493	BF3798
BF3799	SM00812	Alpha-L-fucosidase
BF3816	SM00986	Uracil DNA glycosylase superfamily
BF3816	SM00987	UreE urease accessory protein, C-terminal domain 
BF3819	SM00758	BF3819
BF3823	SM00646	BF3823
BF3825	SM00382	ATPases associated with a variety of cellular activities
BF3825	SM00760	Bacterial dnaA protein helix-turn-helix domain
BF3828	SM01065	Starch binding domain
BF3830	SM00905	Dihydroneopterin aldolase
BF3851	SM00342	helix_turn_helix, arabinose operon control protein
BF3853	SM00851	MGS-like domain
BF3856	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF3863	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF3864	SM00448	cheY-homologous receiver domain
BF3864	SM00862	Transcriptional regulatory protein, C terminal
BF3865	SM00387	Histidine kinase-like ATPases
BF3865	SM00388	His Kinase A (phosphoacceptor) domain
BF3867	SM00838	Elongation factor G C-terminus
BF3867	SM00889	Elongation factor G, domain IV
BF3869	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF3873	SM00965	Secretin and TonB N terminus short domain
BF3878	SM00530	Helix-turn-helix XRE-family like proteins 
BF3891	SM00448	cheY-homologous receiver domain
BF3891	SM00850	LytTr DNA-binding domain
BF3893	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF3893	SM00876	Biotin and Thiamin Synthesis associated domain
BF3894	SM00876	Biotin and Thiamin Synthesis associated domain
BF3904	SM00116	Domain in cystathionine beta-synthase and other proteins.
BF3920	SM00984	UDP binding domain
BF3933	SM00487	DEAD-like helicases superfamily
BF3933	SM00490	helicase superfamily c-terminal domain
BF3934	SM00028	Tetratricopeptide repeats
BF3940	SM01130	BF3940
BF3941	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF3941	SM00895	BF3941
BF3944	SM00830	Chorismate mutase type II
BF3947	SM00400	zinc finger
BF3947	SM00493	BF3947
BF3959	SM00257	Lysin motif
BF3960	SM00562	BF3960
BF3961	SM00487	DEAD-like helicases superfamily
BF3961	SM00490	helicase superfamily c-terminal domain
BF3974	SM00560	LamG-like jellyroll fold domain
BF3996	SM00849	Metallo-beta-lactamase superfamily
BF4008	SM00881	CoA binding domain
BF4017	SM00363	S4 RNA-binding domain
BF4020	SM01266	BF4020
BF4035	SM00851	MGS-like domain
BF4035	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BF4039	SM00382	ATPases associated with a variety of cellular activities
BF4058	SM00028	Tetratricopeptide repeats
BF4068	SM00530	Helix-turn-helix XRE-family like proteins 
BF4069	SM00853	MutL C terminal dimerisation domain
BF4069	SM01340	BF4069
BF4075	SM00116	Domain in cystathionine beta-synthase and other proteins.
BF4075	SM01240	BF4075
BF4076	SM00341	Helicase and RNase D C-terminal
BF4076	SM00487	DEAD-like helicases superfamily
BF4076	SM00490	helicase superfamily c-terminal domain
BF4076	SM00956	BF4076
BF4077	SM00382	ATPases associated with a variety of cellular activities
BF4077	SM00994	ClpX C4-type zinc finger
BF4077	SM01086	C-terminal, D2-small domain, of ClpB protein
BF4082	SM00360	RNA recognition motif
BF4083	SM00382	ATPases associated with a variety of cellular activities
BF4085	SM00382	ATPases associated with a variety of cellular activities
BF4086	SM00421	helix_turn_helix, Lux Regulon
BF4086	SM00448	cheY-homologous receiver domain
BF4101	SM00798	AICARFT/IMPCHase bienzyme
BF4101	SM00851	MGS-like domain
BF4103	SM00382	ATPases associated with a variety of cellular activities
BF4110	SM00387	Histidine kinase-like ATPases
BF4110	SM00388	His Kinase A (phosphoacceptor) domain
BF4110	SM00448	cheY-homologous receiver domain
BF4114	SM00382	ATPases associated with a variety of cellular activities
BF4114	SM00448	cheY-homologous receiver domain
BF4118	SM00822	BF4118
BF4123	SM00382	ATPases associated with a variety of cellular activities
BF4126	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF4128	SM00382	ATPases associated with a variety of cellular activities
BF4129	SM00028	Tetratricopeptide repeats
BF4147	SM01221	BF4147
BF4147	SM01222	BF4147
BF4151	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BF4151	SM00534	ATPase domain of DNA mismatch repair MUTS family
BF4155	SM00662	RNA polymerases D
BF4156	SM00363	S4 RNA-binding domain
BF4156	SM01390	BF4156
BF4159	SM00316	Ribosomal protein S1-like RNA-binding domain
BF4170	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BF4171	SM01374	BF4171
BF4175	SM00322	K homology RNA-binding domain
BF4178	SM01382	BF4178
BF4178	SM01383	BF4178
BF4182	SM01403	BF4182
BF4183	SM00838	Elongation factor G C-terminus
BF4183	SM00889	Elongation factor G, domain IV
BF4191	SM00663	RNA polymerase I subunit A N-terminus
BF4196	SM00649	Ribosomal protein L11/L12
BF4197	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BF4197	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BF4207	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF4208	SM00226	Low molecular weight phosphatase family
BF4210	SM00487	DEAD-like helicases superfamily
BF4210	SM00490	helicase superfamily c-terminal domain
BF4215	SM00870	BF4215
BF4233	SM00382	ATPases associated with a variety of cellular activities
BF4234	SM00342	helix_turn_helix, arabinose operon control protein
BF4234	SM00387	Histidine kinase-like ATPases
BF4234	SM00388	His Kinase A (phosphoacceptor) domain
BF4234	SM00448	cheY-homologous receiver domain
BF4250	SM00758	BF4250
BF4286	SM00901	BF4286
BF4294	SM00448	cheY-homologous receiver domain
BF4294	SM00850	LytTr DNA-binding domain
BF4300	SM01266	BF4300
BF4301	SM00421	helix_turn_helix, Lux Regulon
BF4305	SM00342	helix_turn_helix, arabinose operon control protein
BF4306	SM00861	Transketolase, pyrimidine binding domain
BF4326	SM00316	Ribosomal protein S1-like RNA-binding domain
BF4326	SM00322	K homology RNA-binding domain
BF4329	SM00965	Secretin and TonB N terminus short domain
BF4342	SM00530	Helix-turn-helix XRE-family like proteins 
BF4346	SM00904	Riboflavin kinase
BF4348	SM00831	Cation transporter/ATPase, N-terminus
BF4349	SM00387	Histidine kinase-like ATPases
BF4349	SM00388	His Kinase A (phosphoacceptor) domain
BF4349	SM00448	cheY-homologous receiver domain
BF4353	SM00387	Histidine kinase-like ATPases
BF4360	SM01011	Aminopeptidase P, N-terminal domain
BF4364	SM01001	AIR carboxylase
BF4367	SM00060	Fibronectin type 3 domain
BF4372	SM01217	BF4372
BF4374	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF4374	SM00245	tail specific protease
BF4381	SM00342	helix_turn_helix, arabinose operon control protein
BF4381	SM00387	Histidine kinase-like ATPases
BF4381	SM00388	His Kinase A (phosphoacceptor) domain
BF4381	SM00448	cheY-homologous receiver domain
BF4410	SM00850	LytTr DNA-binding domain
BF4417	SM00028	Tetratricopeptide repeats
BF4417	SM00671	Sel1-like repeats.
BF4419	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BF4419	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BF4419	SM00493	BF4419
BF4421	SM00836	DALR anticodon binding domain
BF4421	SM01016	Arginyl tRNA synthetase N terminal dom
BF4422	SM00411	bacterial (prokaryotic) histone like domain
BF4429	SM00411	bacterial (prokaryotic) histone like domain
BF4437	SM00342	helix_turn_helix, arabinose operon control protein
BF4454	SM00710	Parallel beta-helix repeats
BF4463	SM00838	Elongation factor G C-terminus
BF4464	SM01387	BF4464
BF4465	SM00530	Helix-turn-helix XRE-family like proteins 
BF4467	SM00091	PAS domain
BF4467	SM00387	Histidine kinase-like ATPases
BF4467	SM00388	His Kinase A (phosphoacceptor) domain
BF4468	SM00996	S-adenosyl-L-homocysteine hydrolase
BF4468	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
BF4474	SM00965	Secretin and TonB N terminus short domain
BF4476	SM00421	helix_turn_helix, Lux Regulon
BF4487	SM00382	ATPases associated with a variety of cellular activities
BF4491	SM00342	helix_turn_helix, arabinose operon control protein
BF4491	SM00387	Histidine kinase-like ATPases
BF4491	SM00388	His Kinase A (phosphoacceptor) domain
BF4491	SM00448	cheY-homologous receiver domain
BF4494	SM00881	CoA binding domain
BF4510	SM00984	UDP binding domain
BF4516	SM00344	helix_turn_helix ASNC type
BF4518	SM00448	cheY-homologous receiver domain
BF4518	SM00850	LytTr DNA-binding domain
BF4536	SM00342	helix_turn_helix, arabinose operon control protein
BF4536	SM00387	Histidine kinase-like ATPases
BF4536	SM00388	His Kinase A (phosphoacceptor) domain
BF4536	SM00448	cheY-homologous receiver domain
BF4537	SM00640	Glycosyl hydrolases family 32
BF4545	SM00387	Histidine kinase-like ATPases
BF4545	SM00433	TopoisomeraseII
BF4547	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF4547	SM00245	tail specific protease
BF4548	SM00014	Acid phosphatase homologues
BF4549	SM00342	helix_turn_helix, arabinose operon control protein
BF4557	SM00342	helix_turn_helix, arabinose operon control protein
BF4570	SM00316	Ribosomal protein S1-like RNA-binding domain
BF4570	SM00955	BF4570
BF4582	SM01059	Chloramphenicol acetyltransferase
BF4583	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BF4583	SM00534	ATPase domain of DNA mismatch repair MUTS family
BFp0018	SM00382	ATPases associated with a variety of cellular activities
