locus-tag class description PU02_RS00015 PF00381 PTS HPr component phosphorylation site PU02_RS00015 PF05524 PEP-utilising enzyme, N-terminal PU02_RS00015 PF02896 PEP-utilising enzyme, TIM barrel domain PU02_RS00015 PF00391 PEP-utilising enzyme, mobile domain PU02_RS00015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PU02_RS00020 PF01016 Ribosomal L27 protein PU02_RS00025 PF00829 Ribosomal prokaryotic L21 protein PU02_RS00035 PF00342 Phosphoglucose isomerase PU02_RS00040 PF00873 AcrB/AcrD/AcrF family PU02_RS00055 PF01165 Ribosomal protein S21 PU02_RS00060 PF04107 Glutamate-cysteine ligase family 2(GCS2) PU02_RS00065 PF04452 RNA methyltransferase PU02_RS00075 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PU02_RS00075 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PU02_RS00080 PF01266 FAD dependent oxidoreductase PU02_RS00085 PF00120 Glutamine synthetase, catalytic domain PU02_RS00095 PF01180 Dihydroorotate dehydrogenase PU02_RS00100 PF01741 Large-conductance mechanosensitive channel, MscL PU02_RS00105 PF17854 FtsK alpha domain PU02_RS00105 PF01580 FtsK/SpoIIIE family PU02_RS00105 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PU02_RS00105 PF09397 Ftsk gamma domain PU02_RS00110 PF00171 Aldehyde dehydrogenase family PU02_RS00115 PF00849 RNA pseudouridylate synthase PU02_RS00120 PF04542 Sigma-70 region 2 PU02_RS00120 PF00140 Sigma-70 factor, region 1.2 PU02_RS00120 PF04545 Sigma-70, region 4 PU02_RS00130 PF00709 Adenylosuccinate synthetase PU02_RS00135 PF00266 Aminotransferase class-V PU02_RS00165 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB PU02_RS00180 PF10548 P22AR C-terminal domain PU02_RS00180 PF08346 AntA/AntB antirepressor PU02_RS00235 PF04984 Phage tail sheath protein subtilisin-like domain PU02_RS00235 PF17482 Phage tail sheath C-terminal domain PU02_RS00325 PF04221 RelB antitoxin PU02_RS00335 PF10548 P22AR C-terminal domain PU02_RS00335 PF08346 AntA/AntB antirepressor PU02_RS00345 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system PU02_RS00370 PF01381 Helix-turn-helix PU02_RS00385 PF08346 AntA/AntB antirepressor PU02_RS00385 PF10548 P22AR C-terminal domain PU02_RS00420 PF00436 Single-strand binding protein family PU02_RS00480 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PU02_RS00480 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PU02_RS00515 PF01475 Ferric uptake regulator family PU02_RS00520 PF13533 Biotin-lipoyl like PU02_RS00525 PF07690 Major Facilitator Superfamily PU02_RS00530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PU02_RS00530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PU02_RS00540 PF17773 UPF0176 acylphosphatase like domain PU02_RS00540 PF00581 Rhodanese-like domain PU02_RS00545 PF00970 Oxidoreductase FAD-binding domain PU02_RS00545 PF00175 Oxidoreductase NAD-binding domain PU02_RS00550 PF00842 Alanine racemase, C-terminal domain PU02_RS00550 PF01168 Alanine racemase, N-terminal domain PU02_RS00555 PF02347 Glycine cleavage system P-protein PU02_RS00560 PF01597 Glycine cleavage H-protein PU02_RS00565 PF01571 Aminomethyltransferase folate-binding domain PU02_RS00565 PF08669 Glycine cleavage T-protein C-terminal barrel domain PU02_RS00570 PF03966 Trm112p-like protein PU02_RS00575 PF01118 Semialdehyde dehydrogenase, NAD binding domain PU02_RS00575 PF02774 Semialdehyde dehydrogenase, dimerisation domain PU02_RS00580 PF03180 NLPA lipoprotein PU02_RS00585 PF09383 NIL domain PU02_RS00585 PF00005 ABC transporter PU02_RS00590 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS00595 PF01575 MaoC like domain PU02_RS00640 PF01032 FecCD transport family PU02_RS00645 PF01032 FecCD transport family PU02_RS00650 PF00005 ABC transporter PU02_RS00660 PF01313 Bacterial export proteins, family 3 PU02_RS00665 PF03963 Flagellar hook capping protein - N-terminal region PU02_RS00670 PF07378 Flagellar protein FlbT PU02_RS00690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PU02_RS00690 PF07559 Flagellar basal body protein FlaE PU02_RS00690 PF00460 Flagella basal body rod protein PU02_RS00695 PF00486 Transcriptional regulatory protein, C terminal PU02_RS00715 PF13677 Membrane MotB of proton-channel complex MotA/MotB PU02_RS00715 PF00691 OmpA family PU02_RS00725 PF08345 Flagellar M-ring protein C-terminal PU02_RS00725 PF01514 Secretory protein of YscJ/FliF family PU02_RS00745 PF00813 FliP family PU02_RS00755 PF02107 Flagellar L-ring protein PU02_RS00765 PF02119 Flagellar P-ring protein PU02_RS00770 PF13144 Chaperone for flagella basal body P-ring formation PU02_RS00775 PF00460 Flagella basal body rod protein PU02_RS00775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PU02_RS00780 PF02049 Flagellar hook-basal body complex protein FliE PU02_RS00785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PU02_RS00790 PF00460 Flagella basal body rod protein PU02_RS00795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PU02_RS00795 PF18269 T3SS EscN ATPase C-terminal domain PU02_RS00800 PF00460 Flagella basal body rod protein PU02_RS00800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PU02_RS00810 PF01618 MotA/TolQ/ExbB proton channel family PU02_RS00825 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PU02_RS00830 PF14841 FliG middle domain PU02_RS00830 PF14842 FliG N-terminal domain PU02_RS00830 PF01706 FliG C-terminal domain PU02_RS00835 PF01312 FlhB HrpN YscU SpaS Family PU02_RS00865 PF01311 Bacterial export proteins, family 1 PU02_RS00870 PF00771 FHIPEP family PU02_RS00880 PF06574 FAD synthetase PU02_RS00880 PF01687 Riboflavin kinase PU02_RS00890 PF03023 Lipid II flippase MurJ PU02_RS00895 PF00579 tRNA synthetases class I (W and Y) PU02_RS00900 PF01106 NifU-like domain PU02_RS00905 PF00118 TCP-1/cpn60 chaperonin family PU02_RS00910 PF00166 Chaperonin 10 Kd subunit PU02_RS00915 PF10415 Fumarase C C-terminus PU02_RS00915 PF00206 Lyase PU02_RS00920 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PU02_RS00920 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PU02_RS00920 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PU02_RS00920 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PU02_RS00925 PF08534 Redoxin PU02_RS00930 PF03129 Anticodon binding domain PU02_RS00930 PF13393 Histidyl-tRNA synthetase PU02_RS00935 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PU02_RS00935 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PU02_RS00970 PF08460 Bacterial SH3 domain PU02_RS00970 PF01551 Peptidase family M23 PU02_RS00975 PF04956 TrbC/VIRB2 family PU02_RS00980 PF05101 Type IV secretory pathway, VirB3-like protein PU02_RS00985 PF03135 CagE, TrbE, VirB family, component of type IV transporter system PU02_RS00995 PF04610 TrbL/VirB6 plasmid conjugal transfer protein PU02_RS01005 PF04335 VirB8 protein PU02_RS01010 PF03524 Conjugal transfer protein PU02_RS01015 PF03743 Bacterial conjugation TrbI-like protein PU02_RS01020 PF00437 Type II/IV secretion system protein PU02_RS01025 PF02661 Fic/DOC family PU02_RS01025 PF18543 Intracellular delivery domain PU02_RS01030 PF02534 Type IV secretory system Conjugative DNA transfer PU02_RS01040 PF18543 Intracellular delivery domain PU02_RS01040 PF02661 Fic/DOC family PU02_RS01050 PF02661 Fic/DOC family PU02_RS01050 PF18543 Intracellular delivery domain PU02_RS01055 PF18543 Intracellular delivery domain PU02_RS01055 PF02661 Fic/DOC family PU02_RS01065 PF02661 Fic/DOC family PU02_RS01065 PF18543 Intracellular delivery domain PU02_RS01075 PF18543 Intracellular delivery domain PU02_RS01075 PF02661 Fic/DOC family PU02_RS01115 PF02661 Fic/DOC family PU02_RS01115 PF18543 Intracellular delivery domain PU02_RS01135 PF02661 Fic/DOC family PU02_RS01135 PF18543 Intracellular delivery domain PU02_RS01140 PF18543 Intracellular delivery domain PU02_RS01140 PF02661 Fic/DOC family PU02_RS01145 PF02661 Fic/DOC family PU02_RS01145 PF18543 Intracellular delivery domain PU02_RS01155 PF02661 Fic/DOC family PU02_RS01155 PF18543 Intracellular delivery domain PU02_RS01160 PF02661 Fic/DOC family PU02_RS01160 PF18543 Intracellular delivery domain PU02_RS01165 PF18543 Intracellular delivery domain PU02_RS01165 PF02661 Fic/DOC family PU02_RS01175 PF02661 Fic/DOC family PU02_RS01175 PF18543 Intracellular delivery domain PU02_RS01280 PF17871 AAA lid domain PU02_RS01280 PF02861 Clp amino terminal domain, pathogenicity island component PU02_RS01280 PF07724 AAA domain (Cdc48 subfamily) PU02_RS01280 PF10431 C-terminal, D2-small domain, of ClpB protein PU02_RS01280 PF00004 ATPase family associated with various cellular activities (AAA) PU02_RS01285 PF03884 DNA gyrase inhibitor YacG PU02_RS01290 PF02545 Maf-like protein PU02_RS01295 PF01176 Translation initiation factor 1A / IF-1 PU02_RS01300 PF00731 AIR carboxylase PU02_RS01305 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PU02_RS01305 PF02222 ATP-grasp domain PU02_RS01310 PF00444 Ribosomal protein L36 PU02_RS01325 PF01812 5-formyltetrahydrofolate cyclo-ligase family PU02_RS01330 PF13277 YmdB-like protein PU02_RS01335 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PU02_RS01390 PF09335 SNARE associated Golgi protein PU02_RS01405 PF00692 dUTPase PU02_RS01410 PF02472 Biopolymer transport protein ExbD/TolR PU02_RS01415 PF01618 MotA/TolQ/ExbB proton channel family PU02_RS01425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PU02_RS01425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PU02_RS01425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PU02_RS01425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PU02_RS01430 PF01434 Peptidase family M41 PU02_RS01430 PF06480 FtsH Extracellular PU02_RS01430 PF00004 ATPase family associated with various cellular activities (AAA) PU02_RS01430 PF17862 AAA+ lid domain PU02_RS01435 PF01171 PP-loop family PU02_RS01440 PF00691 OmpA family PU02_RS01450 PF01709 Transcriptional regulator PU02_RS01455 PF01197 Ribosomal protein L31 PU02_RS01460 PF00664 ABC transporter transmembrane region PU02_RS01460 PF00005 ABC transporter PU02_RS01465 PF00459 Inositol monophosphatase family PU02_RS01470 PF08207 Elongation factor P (EF-P) KOW-like domain PU02_RS01470 PF09285 Elongation factor P, C-terminal PU02_RS01470 PF01132 Elongation factor P (EF-P) OB domain PU02_RS01495 PF02075 Crossover junction endodeoxyribonuclease RuvC PU02_RS01500 PF07499 RuvA, C-terminal domain PU02_RS01500 PF01330 RuvA N terminal domain PU02_RS01505 PF17864 RuvB AAA lid domain PU02_RS01505 PF05491 RuvB C-terminal winged helix domain PU02_RS01505 PF05496 Holliday junction DNA helicase RuvB P-loop domain PU02_RS01510 PF03061 Thioesterase superfamily PU02_RS01515 PF01618 MotA/TolQ/ExbB proton channel family PU02_RS01520 PF02472 Biopolymer transport protein ExbD/TolR PU02_RS01530 PF04052 TolB amino-terminal domain PU02_RS01530 PF07676 WD40-like Beta Propeller Repeat PU02_RS01535 PF00274 Fructose-bisphosphate aldolase class-I PU02_RS01540 PF00162 Phosphoglycerate kinase PU02_RS01550 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PU02_RS01550 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PU02_RS01555 PF02779 Transketolase, pyrimidine binding domain PU02_RS01555 PF00456 Transketolase, thiamine diphosphate binding domain PU02_RS01555 PF02780 Transketolase, C-terminal domain PU02_RS01575 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) PU02_RS01580 PF00005 ABC transporter PU02_RS01580 PF16326 ABC transporter C-terminal domain PU02_RS01595 PF01435 Peptidase family M48 PU02_RS01595 PF13181 Tetratricopeptide repeat PU02_RS01600 PF00140 Sigma-70 factor, region 1.2 PU02_RS01600 PF04542 Sigma-70 region 2 PU02_RS01600 PF04545 Sigma-70, region 4 PU02_RS01610 PF00037 4Fe-4S binding domain PU02_RS01610 PF11953 Domain of unknown function (DUF3470) PU02_RS01620 PF01783 Ribosomal L32p protein family PU02_RS01625 PF00912 Transglycosylase PU02_RS01630 PF00348 Polyprenyl synthetase PU02_RS01635 PF04551 GcpE protein PU02_RS01640 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PU02_RS01645 PF02874 ATP synthase alpha/beta family, beta-barrel domain PU02_RS01645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PU02_RS01650 PF00231 ATP synthase PU02_RS01655 PF02874 ATP synthase alpha/beta family, beta-barrel domain PU02_RS01655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PU02_RS01655 PF00306 ATP synthase alpha/beta chain, C terminal domain PU02_RS01660 PF00213 ATP synthase delta (OSCP) subunit PU02_RS01670 PF17764 3′ DNA-binding domain (3′BD) PU02_RS01670 PF18074 Primosomal protein N C-terminal domain PU02_RS01670 PF00270 DEAD/DEAH box helicase PU02_RS01670 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PU02_RS01675 PF00923 Transaldolase/Fructose-6-phosphate aldolase PU02_RS01685 PF08264 Anticodon-binding domain of tRNA PU02_RS01685 PF00133 tRNA synthetases class I (I, L, M and V) PU02_RS01685 PF13603 Leucyl-tRNA synthetase, Domain 2 PU02_RS01690 PF01168 Alanine racemase, N-terminal domain PU02_RS01695 PF16177 Acetyl-coenzyme A synthetase N-terminus PU02_RS01695 PF00501 AMP-binding enzyme PU02_RS01695 PF13193 AMP-binding enzyme C-terminal domain PU02_RS01700 PF00005 ABC transporter PU02_RS01715 PF00005 ABC transporter PU02_RS01715 PF02687 FtsX-like permease family PU02_RS01715 PF12704 MacB-like periplasmic core domain PU02_RS01720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PU02_RS01720 PF00529 HlyD membrane-fusion protein of T1SS PU02_RS01735 PF01580 FtsK/SpoIIIE family PU02_RS01735 PF09397 Ftsk gamma domain PU02_RS01735 PF17854 FtsK alpha domain PU02_RS01735 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PU02_RS01740 PF01494 FAD binding domain PU02_RS01745 PF13085 2Fe-2S iron-sulfur cluster binding domain PU02_RS01745 PF13237 4Fe-4S dicluster domain PU02_RS01750 PF02910 Fumarate reductase flavoprotein C-term PU02_RS01750 PF00890 FAD binding domain PU02_RS01760 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PU02_RS01765 PF01245 Ribosomal protein L19 PU02_RS01770 PF01746 tRNA (Guanine-1)-methyltransferase PU02_RS01775 PF01782 RimM N-terminal domain PU02_RS01775 PF05239 PRC-barrel domain PU02_RS01785 PF02899 Phage integrase, N-terminal SAM-like domain PU02_RS01785 PF00589 Phage integrase family PU02_RS01790 PF01722 BolA-like protein PU02_RS01795 PF00226 DnaJ domain PU02_RS01800 PF08406 CbbQ/NirQ/NorQ C-terminal PU02_RS01800 PF07728 AAA domain (dynein-related subfamily) PU02_RS01800 PF12556 Cobaltochelatase CobS subunit N terminal PU02_RS01805 PF11775 Cobalamin biosynthesis protein CobT VWA domain PU02_RS01805 PF06213 Cobalamin biosynthesis protein CobT PU02_RS01815 PF00830 Ribosomal L28 family PU02_RS01825 PF01808 AICARFT/IMPCHase bienzyme PU02_RS01825 PF02142 MGS-like domain PU02_RS01835 PF01189 16S rRNA methyltransferase RsmB/F PU02_RS01835 PF01029 NusB family PU02_RS01840 PF01435 Peptidase family M48 PU02_RS01850 PF00886 Ribosomal protein S16 PU02_RS01860 PF02881 SRP54-type protein, helical bundle domain PU02_RS01860 PF02978 Signal peptide binding domain PU02_RS01860 PF00448 SRP54-type protein, GTPase domain PU02_RS01870 PF00484 Carbonic anhydrase PU02_RS01875 PF05088 Bacterial NAD-glutamate dehydrogenase PU02_RS01890 PF00814 Glycoprotease family PU02_RS01905 PF00072 Response regulator receiver domain PU02_RS01905 PF00486 Transcriptional regulatory protein, C terminal PU02_RS01920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PU02_RS01920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PU02_RS01930 PF14698 Argininosuccinate lyase C-terminal PU02_RS01930 PF00206 Lyase PU02_RS01935 PF00578 AhpC/TSA family PU02_RS01940 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PU02_RS01950 PF00005 ABC transporter PU02_RS01975 PF07943 Penicillin-binding protein 5, C-terminal domain PU02_RS01975 PF00768 D-alanyl-D-alanine carboxypeptidase PU02_RS01980 PF03734 L,D-transpeptidase catalytic domain PU02_RS01985 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PU02_RS01990 PF02899 Phage integrase, N-terminal SAM-like domain PU02_RS01990 PF00589 Phage integrase family PU02_RS01995 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme PU02_RS02000 PF03334 Na+/H+ antiporter subunit PU02_RS02005 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) PU02_RS02010 PF01899 Na+/H+ ion antiporter subunit PU02_RS02015 PF00361 Proton-conducting membrane transporter PU02_RS02020 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PU02_RS02025 PF00361 Proton-conducting membrane transporter PU02_RS02025 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PU02_RS02025 PF13244 Domain of unknown function (DUF4040) PU02_RS02025 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter PU02_RS02030 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PU02_RS02035 PF03435 Saccharopine dehydrogenase NADP binding domain PU02_RS02035 PF16653 Saccharopine dehydrogenase C-terminal domain PU02_RS02040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PU02_RS02040 PF07992 Pyridine nucleotide-disulphide oxidoreductase PU02_RS02045 PF02817 e3 binding domain PU02_RS02045 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PU02_RS02045 PF00364 Biotin-requiring enzyme PU02_RS02050 PF00676 Dehydrogenase E1 component PU02_RS02050 PF16078 2-oxoglutarate dehydrogenase N-terminus PU02_RS02050 PF16870 2-oxoglutarate dehydrogenase C-terminal PU02_RS02050 PF02779 Transketolase, pyrimidine binding domain PU02_RS02055 PF02629 CoA binding domain PU02_RS02055 PF00549 CoA-ligase PU02_RS02060 PF08442 ATP-grasp domain PU02_RS02060 PF00549 CoA-ligase PU02_RS02065 PF00056 lactate/malate dehydrogenase, NAD binding domain PU02_RS02065 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PU02_RS02070 PF03969 AFG1-like ATPase PU02_RS02075 PF02974 Protease inhibitor Inh PU02_RS02080 PF01678 Diaminopimelate epimerase PU02_RS02085 PF00919 Uncharacterized protein family UPF0004 PU02_RS02085 PF04055 Radical SAM superfamily PU02_RS02090 PF00448 SRP54-type protein, GTPase domain PU02_RS02090 PF02881 SRP54-type protein, helical bundle domain PU02_RS02095 PF04279 Intracellular septation protein A PU02_RS02105 PF02195 ParB-like nuclease domain PU02_RS02105 PF17762 HTH domain found in ParB protein PU02_RS02110 PF13614 AAA domain PU02_RS02115 PF02527 rRNA small subunit methyltransferase G PU02_RS02120 PF01134 Glucose inhibited division protein A PU02_RS02120 PF13932 GidA associated domain PU02_RS02125 PF10396 GTP-binding protein TrmE N-terminus PU02_RS02125 PF12631 MnmE helical domain PU02_RS02125 PF01926 50S ribosome-binding GTPase PU02_RS02130 PF07497 Rho termination factor, RNA-binding domain PU02_RS02130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PU02_RS02130 PF07498 Rho termination factor, N-terminal domain PU02_RS02135 PF03618 Kinase/pyrophosphorylase PU02_RS02140 PF02545 Maf-like protein PU02_RS02145 PF01121 Dephospho-CoA kinase PU02_RS02150 PF00929 Exonuclease PU02_RS02155 PF01612 3'-5' exonuclease PU02_RS02155 PF00476 DNA polymerase family A PU02_RS02155 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PU02_RS02155 PF01367 5'-3' exonuclease, C-terminal SAM fold PU02_RS02160 PF01027 Inhibitor of apoptosis-promoting Bax1 PU02_RS02165 PF01252 Signal peptidase (SPase) II PU02_RS02170 PF00588 SpoU rRNA Methylase family PU02_RS02170 PF08032 RNA 2'-O ribose methyltransferase substrate binding PU02_RS02175 PF10672 S-adenosylmethionine-dependent methyltransferase PU02_RS02175 PF01170 Putative RNA methylase family UPF0020 PU02_RS02175 PF02926 THUMP domain PU02_RS02185 PF00216 Bacterial DNA-binding protein PU02_RS02200 PF00005 ABC transporter PU02_RS02205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PU02_RS02215 PF04055 Radical SAM superfamily PU02_RS02220 PF01810 LysE type translocator PU02_RS02225 PF00764 Arginosuccinate synthase PU02_RS02230 PF01921 tRNA synthetases class I (K) PU02_RS02235 PF16658 Class II release factor RF3, C-terminal domain PU02_RS02235 PF00009 Elongation factor Tu GTP binding domain PU02_RS02240 PF00085 Thioredoxin PU02_RS02245 PF00580 UvrD/REP helicase N-terminal domain PU02_RS02245 PF13361 UvrD-like helicase C-terminal domain PU02_RS02245 PF12705 PD-(D/E)XK nuclease superfamily PU02_RS02250 PF12705 PD-(D/E)XK nuclease superfamily PU02_RS02255 PF01636 Phosphotransferase enzyme family PU02_RS02260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PU02_RS02260 PF00512 His Kinase A (phospho-acceptor) domain PU02_RS02265 PF11066 Protein of unknown function (DUF2867) PU02_RS02265 PF13460 NAD(P)H-binding PU02_RS02270 PF08245 Mur ligase middle domain PU02_RS02275 PF01039 Carboxyl transferase domain PU02_RS02285 PF02441 Flavoprotein PU02_RS02285 PF04127 DNA / pantothenate metabolism flavoprotein PU02_RS02290 PF03109 ABC1 family PU02_RS02295 PF01209 ubiE/COQ5 methyltransferase family PU02_RS02300 PF01751 Toprim domain PU02_RS02300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PU02_RS02300 PF00986 DNA gyrase B subunit, carboxyl terminus PU02_RS02300 PF00204 DNA gyrase B PU02_RS02305 PF13335 Magnesium chelatase, subunit ChlI C-terminal PU02_RS02305 PF01078 Magnesium chelatase, subunit ChlI PU02_RS02320 PF00005 ABC transporter PU02_RS02320 PF00664 ABC transporter transmembrane region PU02_RS02325 PF05198 Translation initiation factor IF-3, N-terminal domain PU02_RS02325 PF00707 Translation initiation factor IF-3, C-terminal domain PU02_RS02340 PF01546 Peptidase family M20/M25/M40 PU02_RS02340 PF07687 Peptidase dimerisation domain PU02_RS02345 PF04055 Radical SAM superfamily PU02_RS02345 PF06969 HemN C-terminal domain PU02_RS02350 PF01725 Ham1 family PU02_RS02355 PF01628 HrcA protein C terminal domain PU02_RS02355 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding PU02_RS02360 PF01025 GrpE PU02_RS02365 PF00512 His Kinase A (phospho-acceptor) domain PU02_RS02365 PF00672 HAMP domain PU02_RS02365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PU02_RS02365 PF13755 Sensor N-terminal transmembrane domain PU02_RS02365 PF13756 Stimulus-sensing domain PU02_RS02370 PF00072 Response regulator receiver domain PU02_RS02370 PF00486 Transcriptional regulatory protein, C terminal PU02_RS02385 PF00012 Hsp70 protein PU02_RS02390 PF01556 DnaJ C terminal domain PU02_RS02390 PF00226 DnaJ domain PU02_RS02390 PF00684 DnaJ central domain PU02_RS02395 PF00696 Amino acid kinase family PU02_RS02405 PF06421 GTP-binding protein LepA C-terminus PU02_RS02405 PF03144 Elongation factor Tu domain 2 PU02_RS02405 PF00009 Elongation factor Tu GTP binding domain PU02_RS02405 PF00679 Elongation factor G C-terminus PU02_RS02410 PF14602 Hexapeptide repeat of succinyl-transferase PU02_RS02410 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PU02_RS02410 PF00132 Bacterial transferase hexapeptide (six repeats) PU02_RS02420 PF01416 tRNA pseudouridine synthase PU02_RS02425 PF02911 Formyl transferase, C-terminal domain PU02_RS02425 PF00551 Formyl transferase PU02_RS02430 PF01327 Polypeptide deformylase PU02_RS02435 PF02646 RmuC family PU02_RS02450 PF00633 Helix-hairpin-helix motif PU02_RS02450 PF10576 Iron-sulfur binding domain of endonuclease III PU02_RS02450 PF00730 HhH-GPD superfamily base excision DNA repair protein PU02_RS02455 PF01632 Ribosomal protein L35 PU02_RS02460 PF00453 Ribosomal protein L20 PU02_RS02465 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PU02_RS02465 PF01409 tRNA synthetases class II core domain (F) PU02_RS02470 PF03147 Ferredoxin-fold anticodon binding domain PU02_RS02470 PF03484 tRNA synthetase B5 domain PU02_RS02470 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PU02_RS02470 PF01588 Putative tRNA binding domain PU02_RS02470 PF03483 B3/4 domain PU02_RS02475 PF01297 Zinc-uptake complex component A periplasmic PU02_RS02480 PF00005 ABC transporter PU02_RS02485 PF00950 ABC 3 transport family PU02_RS02490 PF00950 ABC 3 transport family PU02_RS02495 PF04304 Protein of unknown function (DUF454) PU02_RS02500 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PU02_RS02500 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PU02_RS02510 PF00575 S1 RNA binding domain PU02_RS02515 PF02224 Cytidylate kinase PU02_RS02535 PF00488 MutS domain V PU02_RS02535 PF05192 MutS domain III PU02_RS02535 PF05188 MutS domain II PU02_RS02535 PF05190 MutS family domain IV PU02_RS02535 PF01624 MutS domain I PU02_RS02540 PF03949 Malic enzyme, NAD binding domain PU02_RS02540 PF01515 Phosphate acetyl/butaryl transferase PU02_RS02540 PF00390 Malic enzyme, N-terminal domain PU02_RS02545 PF02556 Preprotein translocase subunit SecB PU02_RS02550 PF04186 FxsA cytoplasmic membrane protein PU02_RS02565 PF01430 Hsp33 protein PU02_RS02570 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PU02_RS02570 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PU02_RS02575 PF00202 Aminotransferase class-III PU02_RS02585 PF08534 Redoxin PU02_RS02590 PF01578 Cytochrome C assembly protein PU02_RS02595 PF03379 CcmB protein PU02_RS02600 PF00005 ABC transporter PU02_RS02605 PF00330 Aconitase family (aconitate hydratase) PU02_RS02605 PF00694 Aconitase C-terminal domain PU02_RS02610 PF01649 Ribosomal protein S20 PU02_RS02615 PF11638 DnaA N-terminal domain PU02_RS02615 PF08299 Bacterial dnaA protein helix-turn-helix PU02_RS02615 PF00308 Bacterial dnaA protein PU02_RS02620 PF00712 DNA polymerase III beta subunit, N-terminal domain PU02_RS02620 PF02768 DNA polymerase III beta subunit, C-terminal domain PU02_RS02620 PF02767 DNA polymerase III beta subunit, central domain PU02_RS02625 PF02463 RecF/RecN/SMC N terminal domain PU02_RS02630 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PU02_RS02630 PF06481 COX Aromatic Rich Motif PU02_RS02635 PF00115 Cytochrome C and Quinol oxidase polypeptide I PU02_RS02640 PF00510 Cytochrome c oxidase subunit III PU02_RS02645 PF03626 Prokaryotic Cytochrome C oxidase subunit IV PU02_RS02655 PF02801 Beta-ketoacyl synthase, C-terminal domain PU02_RS02655 PF00109 Beta-ketoacyl synthase, N-terminal domain PU02_RS02660 PF07977 FabA-like domain PU02_RS02675 PF00877 NlpC/P60 family PU02_RS02680 PF02789 Cytosol aminopeptidase family, N-terminal domain PU02_RS02680 PF00883 Cytosol aminopeptidase family, catalytic domain PU02_RS02685 PF00485 Phosphoribulokinase / Uridine kinase family PU02_RS02690 PF00227 Proteasome subunit PU02_RS02695 PF07724 AAA domain (Cdc48 subfamily) PU02_RS02695 PF00004 ATPase family associated with various cellular activities (AAA) PU02_RS02695 PF10431 C-terminal, D2-small domain, of ClpB protein PU02_RS02700 PF03725 3' exoribonuclease family, domain 2 PU02_RS02700 PF00575 S1 RNA binding domain PU02_RS02700 PF00013 KH domain PU02_RS02700 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PU02_RS02700 PF01138 3' exoribonuclease family, domain 1 PU02_RS02705 PF00312 Ribosomal protein S15 PU02_RS02710 PF07690 Major Facilitator Superfamily PU02_RS02715 PF01509 TruB family pseudouridylate synthase (N terminal domain) PU02_RS02715 PF16198 tRNA pseudouridylate synthase B C-terminal domain PU02_RS02720 PF02033 Ribosome-binding factor A PU02_RS02725 PF11987 Translation-initiation factor 2 PU02_RS02725 PF00009 Elongation factor Tu GTP binding domain PU02_RS02725 PF08364 Bacterial translation initiation factor IF-2 associated region PU02_RS02725 PF04760 Translation initiation factor IF-2, N-terminal region PU02_RS02735 PF08529 NusA N-terminal domain PU02_RS02735 PF00575 S1 RNA binding domain PU02_RS02735 PF13184 NusA-like KH domain PU02_RS02740 PF02576 RimP N-terminal domain PU02_RS02740 PF17384 RimP C-terminal SH3 domain PU02_RS02745 PF02390 Putative methyltransferase PU02_RS02750 PF02772 S-adenosylmethionine synthetase, central domain PU02_RS02750 PF00438 S-adenosylmethionine synthetase, N-terminal domain PU02_RS02750 PF02773 S-adenosylmethionine synthetase, C-terminal domain PU02_RS02755 PF01381 Helix-turn-helix PU02_RS02760 PF00795 Carbon-nitrogen hydrolase PU02_RS02765 PF00571 CBS domain PU02_RS02765 PF03471 Transporter associated domain PU02_RS02770 PF02130 Uncharacterized protein family UPF0054 PU02_RS02775 PF02562 PhoH-like protein PU02_RS02780 PF04055 Radical SAM superfamily PU02_RS02780 PF01938 TRAM domain PU02_RS02780 PF00919 Uncharacterized protein family UPF0004 PU02_RS02790 PF00814 Glycoprotease family PU02_RS02795 PF02132 RecR protein PU02_RS02795 PF13662 Toprim domain PU02_RS02800 PF02575 YbaB/EbfC DNA-binding family PU02_RS02805 PF12169 DNA polymerase III subunits gamma and tau domain III PU02_RS02805 PF12170 DNA polymerase III tau subunit V interacting with alpha PU02_RS02805 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PU02_RS02810 PF02348 Cytidylyltransferase PU02_RS02815 PF00034 Cytochrome c PU02_RS02820 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS02825 PF12911 N-terminal TM domain of oligopeptide transport permease C PU02_RS02825 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS02830 PF00005 ABC transporter PU02_RS02830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PU02_RS02835 PF00899 ThiF family PU02_RS02835 PF00581 Rhodanese-like domain PU02_RS02840 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PU02_RS02840 PF02951 Prokaryotic glutathione synthetase, N-terminal domain PU02_RS02865 PF08346 AntA/AntB antirepressor PU02_RS02865 PF10548 P22AR C-terminal domain PU02_RS02920 PF00436 Single-strand binding protein family PU02_RS02990 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS02995 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS03000 PF00005 ABC transporter PU02_RS03005 PF01895 PhoU domain PU02_RS03015 PF02073 Thermophilic metalloprotease (M29) PU02_RS03020 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PU02_RS03020 PF06827 Zinc finger found in FPG and IleRS PU02_RS03020 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PU02_RS03035 PF13505 Outer membrane protein beta-barrel domain PU02_RS03040 PF13505 Outer membrane protein beta-barrel domain PU02_RS03045 PF00133 tRNA synthetases class I (I, L, M and V) PU02_RS03045 PF08264 Anticodon-binding domain of tRNA PU02_RS03050 PF14437 MafB19-like deaminase PU02_RS03055 PF01479 S4 domain PU02_RS03055 PF00849 RNA pseudouridylate synthase PU02_RS03065 PF01523 Putative modulator of DNA gyrase PU02_RS03070 PF00459 Inositol monophosphatase family PU02_RS03085 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PU02_RS03090 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PU02_RS03095 PF01119 DNA mismatch repair protein, C-terminal domain PU02_RS03095 PF08676 MutL C terminal dimerisation domain PU02_RS03100 PF00692 dUTPase PU02_RS03110 PF00324 Amino acid permease PU02_RS03115 PF00005 ABC transporter PU02_RS03120 PF00324 Amino acid permease PU02_RS03125 PF02361 Cobalt transport protein PU02_RS03130 PF02632 BioY family PU02_RS03165 PF08346 AntA/AntB antirepressor PU02_RS03165 PF10548 P22AR C-terminal domain PU02_RS03240 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system PU02_RS03250 PF03743 Bacterial conjugation TrbI-like protein PU02_RS03260 PF00436 Single-strand binding protein family PU02_RS03300 PF09669 Phage regulatory protein Rha (Phage_pRha) PU02_RS03300 PF10549 ORF11CD3 domain PU02_RS03335 PF00300 Histidine phosphatase superfamily (branch 1) PU02_RS03340 PF01113 Dihydrodipicolinate reductase, N-terminus PU02_RS03340 PF05173 Dihydrodipicolinate reductase, C-terminus PU02_RS03345 PF13417 Glutathione S-transferase, N-terminal domain PU02_RS03345 PF00043 Glutathione S-transferase, C-terminal domain PU02_RS03350 PF01926 50S ribosome-binding GTPase PU02_RS03355 PF14849 YidC periplasmic domain PU02_RS03355 PF02096 60Kd inner membrane protein PU02_RS03360 PF00825 Ribonuclease P PU02_RS03365 PF00468 Ribosomal protein L34 PU02_RS03370 PF10609 NUBPL iron-transfer P-loop NTPase PU02_RS03370 PF01883 Iron-sulfur cluster assembly protein PU02_RS03375 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PU02_RS03380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PU02_RS03385 PF02021 Uncharacterised protein family UPF0102 PU02_RS03395 PF00669 Bacterial flagellin N-terminal helical region PU02_RS03395 PF00700 Bacterial flagellin C-terminal helical region PU02_RS03405 PF01012 Electron transfer flavoprotein domain PU02_RS03405 PF00766 Electron transfer flavoprotein FAD-binding domain PU02_RS03410 PF01012 Electron transfer flavoprotein domain PU02_RS03425 PF13742 OB-fold nucleic acid binding domain PU02_RS03425 PF02601 Exonuclease VII, large subunit PU02_RS03430 PF03352 Methyladenine glycosylase PU02_RS03435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PU02_RS03440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PU02_RS03445 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS03450 PF12911 N-terminal TM domain of oligopeptide transport permease C PU02_RS03450 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS03455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PU02_RS03455 PF00005 ABC transporter PU02_RS03460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PU02_RS03460 PF00005 ABC transporter PU02_RS03470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PU02_RS03470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PU02_RS03475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PU02_RS03490 PF10090 Histidine phosphotransferase C-terminal domain PU02_RS03495 PF00072 Response regulator receiver domain PU02_RS03495 PF00486 Transcriptional regulatory protein, C terminal PU02_RS03520 PF16916 Dimerisation domain of Zinc Transporter PU02_RS03520 PF01545 Cation efflux family PU02_RS03550 PF07726 ATPase family associated with various cellular activities (AAA) PU02_RS03550 PF17863 AAA lid domain PU02_RS03555 PF13735 tRNA nucleotidyltransferase domain 2 putative PU02_RS03555 PF12627 Probable RNA and SrmB- binding site of polymerase A PU02_RS03555 PF01743 Poly A polymerase head domain PU02_RS03560 PF00588 SpoU rRNA Methylase family PU02_RS03565 PF06071 Protein of unknown function (DUF933) PU02_RS03565 PF01926 50S ribosome-binding GTPase PU02_RS03570 PF03734 L,D-transpeptidase catalytic domain PU02_RS03570 PF17969 L,D-transpeptidase C-terminal domain PU02_RS03575 PF01195 Peptidyl-tRNA hydrolase PU02_RS03580 PF14693 Ribosomal protein TL5, C-terminal domain PU02_RS03580 PF01386 Ribosomal L25p family PU02_RS03585 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PU02_RS03585 PF14572 Phosphoribosyl synthetase-associated domain PU02_RS03590 PF02578 Multi-copper polyphenol oxidoreductase laccase PU02_RS03600 PF01790 Prolipoprotein diacylglyceryl transferase PU02_RS03615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PU02_RS03615 PF00672 HAMP domain PU02_RS03615 PF00512 His Kinase A (phospho-acceptor) domain PU02_RS03615 PF16527 Two-component sensor protein CpxA, periplasmic domain PU02_RS03620 PF00072 Response regulator receiver domain PU02_RS03620 PF00486 Transcriptional regulatory protein, C terminal PU02_RS03625 PF00753 Metallo-beta-lactamase superfamily PU02_RS03635 PF17757 UvrB interaction domain PU02_RS03635 PF02151 UvrB/uvrC motif PU02_RS03635 PF12344 Ultra-violet resistance protein B PU02_RS03635 PF04851 Type III restriction enzyme, res subunit PU02_RS03635 PF00271 Helicase conserved C-terminal domain PU02_RS03640 PF01272 Transcription elongation factor, GreA/GreB, C-term PU02_RS03640 PF03449 Transcription elongation factor, N-terminal PU02_RS03645 PF00534 Glycosyl transferases group 1 PU02_RS03650 PF02386 Cation transport protein PU02_RS03655 PF07992 Pyridine nucleotide-disulphide oxidoreductase PU02_RS03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PU02_RS03660 PF03466 LysR substrate binding domain PU02_RS03665 PF00155 Aminotransferase class I and II PU02_RS03670 PF00313 'Cold-shock' DNA-binding domain PU02_RS03675 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PU02_RS03675 PF02142 MGS-like domain PU02_RS03675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PU02_RS03680 PF07690 Major Facilitator Superfamily PU02_RS03685 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PU02_RS03685 PF00117 Glutamine amidotransferase class-I PU02_RS03695 PF00924 Mechanosensitive ion channel PU02_RS03700 PF01807 CHC2 zinc finger PU02_RS03700 PF08275 DNA primase catalytic core, N-terminal domain PU02_RS03700 PF08278 DNA primase DnaG DnaB-binding PU02_RS03700 PF10410 DnaB-helicase binding domain of primase PU02_RS03705 PF04542 Sigma-70 region 2 PU02_RS03705 PF04539 Sigma-70 region 3 PU02_RS03705 PF04545 Sigma-70, region 4 PU02_RS03705 PF00140 Sigma-70 factor, region 1.2 PU02_RS03705 PF04546 Sigma-70, non-essential region PU02_RS03705 PF03979 Sigma-70 factor, region 1.1 PU02_RS03710 PF03692 Putative zinc- or iron-chelating domain PU02_RS03715 PF04402 Protein of unknown function (DUF541) PU02_RS03735 PF00857 Isochorismatase family PU02_RS03740 PF00005 ABC transporter PU02_RS03740 PF12848 ABC transporter PU02_RS03750 PF01795 MraW methylase family PU02_RS03760 PF03717 Penicillin-binding Protein dimerisation domain PU02_RS03760 PF00905 Penicillin binding protein transpeptidase domain PU02_RS03765 PF01225 Mur ligase family, catalytic domain PU02_RS03765 PF02875 Mur ligase family, glutamate ligase domain PU02_RS03765 PF08245 Mur ligase middle domain PU02_RS03770 PF08245 Mur ligase middle domain PU02_RS03770 PF02875 Mur ligase family, glutamate ligase domain PU02_RS03770 PF01225 Mur ligase family, catalytic domain PU02_RS03775 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PU02_RS03775 PF00953 Glycosyl transferase family 4 PU02_RS03780 PF08245 Mur ligase middle domain PU02_RS03785 PF01098 Cell cycle protein PU02_RS03790 PF03033 Glycosyltransferase family 28 N-terminal domain PU02_RS03790 PF04101 Glycosyltransferase family 28 C-terminal domain PU02_RS03795 PF01225 Mur ligase family, catalytic domain PU02_RS03795 PF08245 Mur ligase middle domain PU02_RS03795 PF02875 Mur ligase family, glutamate ligase domain PU02_RS03800 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PU02_RS03800 PF01565 FAD binding domain PU02_RS03805 PF07478 D-ala D-ala ligase C-terminus PU02_RS03805 PF01820 D-ala D-ala ligase N-terminus PU02_RS03810 PF08478 POTRA domain, FtsQ-type PU02_RS03810 PF03799 Cell division protein FtsQ PU02_RS03815 PF02491 SHS2 domain inserted in FTSA PU02_RS03820 PF12327 FtsZ family, C-terminal domain PU02_RS03820 PF00091 Tubulin/FtsZ family, GTPase domain PU02_RS03825 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PU02_RS03830 PF13525 Outer membrane lipoprotein PU02_RS03835 PF02463 RecF/RecN/SMC N terminal domain PU02_RS03840 PF00533 BRCA1 C Terminus (BRCT) domain PU02_RS03840 PF01653 NAD-dependent DNA ligase adenylation domain PU02_RS03840 PF03120 NAD-dependent DNA ligase OB-fold domain PU02_RS03840 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PU02_RS03840 PF12826 Helix-hairpin-helix motif PU02_RS03845 PF01321 Creatinase/Prolidase N-terminal domain PU02_RS03845 PF00557 Metallopeptidase family M24 PU02_RS03855 PF02630 SCO1/SenC PU02_RS03860 PF13361 UvrD-like helicase C-terminal domain PU02_RS03860 PF00580 UvrD/REP helicase N-terminal domain PU02_RS03885 PF00083 Sugar (and other) transporter PU02_RS03890 PF00303 Thymidylate synthase PU02_RS03895 PF00186 Dihydrofolate reductase PU02_RS03905 PF01145 SPFH domain / Band 7 family PU02_RS03910 PF13180 PDZ domain PU02_RS03920 PF13538 UvrD-like helicase C-terminal domain PU02_RS03920 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain PU02_RS03920 PF14490 Helix-hairpin-helix containing domain PU02_RS03925 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PU02_RS03930 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PU02_RS03930 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PU02_RS03935 PF00324 Amino acid permease PU02_RS03945 PF03741 Integral membrane protein TerC family PU02_RS03945 PF00571 CBS domain PU02_RS03945 PF03471 Transporter associated domain PU02_RS03950 PF09924 Uncharacterised conserved protein (DUF2156) PU02_RS03950 PF03706 Lysylphosphatidylglycerol synthase TM region PU02_RS03955 PF07549 SecD/SecF GG Motif PU02_RS03955 PF02355 Protein export membrane protein PU02_RS03970 PF00271 Helicase conserved C-terminal domain PU02_RS03970 PF00270 DEAD/DEAH box helicase PU02_RS03995 PF02321 Outer membrane efflux protein PU02_RS04005 PF00133 tRNA synthetases class I (I, L, M and V) PU02_RS04005 PF08264 Anticodon-binding domain of tRNA PU02_RS04005 PF10458 Valyl tRNA synthetase tRNA binding arm PU02_RS04010 PF00005 ABC transporter PU02_RS04015 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS04020 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS04025 PF00497 Bacterial extracellular solute-binding proteins, family 3 PU02_RS04035 PF00164 Ribosomal protein S12/S23 PU02_RS04040 PF00177 Ribosomal protein S7p/S5e PU02_RS04045 PF00009 Elongation factor Tu GTP binding domain PU02_RS04045 PF03764 Elongation factor G, domain IV PU02_RS04045 PF14492 Elongation Factor G, domain II PU02_RS04045 PF03144 Elongation factor Tu domain 2 PU02_RS04045 PF00679 Elongation factor G C-terminus PU02_RS04050 PF03143 Elongation factor Tu C-terminal domain PU02_RS04050 PF03144 Elongation factor Tu domain 2 PU02_RS04050 PF00009 Elongation factor Tu GTP binding domain PU02_RS04055 PF00338 Ribosomal protein S10p/S20e PU02_RS04060 PF00297 Ribosomal protein L3 PU02_RS04065 PF00573 Ribosomal protein L4/L1 family PU02_RS04070 PF00276 Ribosomal protein L23 PU02_RS04075 PF03947 Ribosomal Proteins L2, C-terminal domain PU02_RS04075 PF00181 Ribosomal Proteins L2, RNA binding domain PU02_RS04080 PF00203 Ribosomal protein S19 PU02_RS04085 PF00237 Ribosomal protein L22p/L17e PU02_RS04090 PF00189 Ribosomal protein S3, C-terminal domain PU02_RS04090 PF07650 KH domain PU02_RS04095 PF00252 Ribosomal protein L16p/L10e PU02_RS04100 PF00831 Ribosomal L29 protein PU02_RS04105 PF00366 Ribosomal protein S17 PU02_RS04110 PF00238 Ribosomal protein L14p/L23e PU02_RS04115 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PU02_RS04115 PF00467 KOW motif PU02_RS04120 PF00673 ribosomal L5P family C-terminus PU02_RS04120 PF00281 Ribosomal protein L5 PU02_RS04125 PF00253 Ribosomal protein S14p/S29e PU02_RS04130 PF00410 Ribosomal protein S8 PU02_RS04135 PF00347 Ribosomal protein L6 PU02_RS04140 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PU02_RS04145 PF00333 Ribosomal protein S5, N-terminal domain PU02_RS04145 PF03719 Ribosomal protein S5, C-terminal domain PU02_RS04150 PF00327 Ribosomal protein L30p/L7e PU02_RS04155 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PU02_RS04160 PF00344 SecY translocase PU02_RS04170 PF00416 Ribosomal protein S13/S18 PU02_RS04175 PF00411 Ribosomal protein S11 PU02_RS04180 PF01000 RNA polymerase Rpb3/RpoA insert domain PU02_RS04180 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PU02_RS04180 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PU02_RS04185 PF01196 Ribosomal protein L17 PU02_RS04190 PF13180 PDZ domain PU02_RS04190 PF17820 PDZ domain PU02_RS04195 PF12002 MgsA AAA+ ATPase C terminal PU02_RS04195 PF16193 AAA C-terminal domain PU02_RS04195 PF00004 ATPase family associated with various cellular activities (AAA) PU02_RS04200 PF00154 recA bacterial DNA recombination protein PU02_RS04205 PF01411 tRNA synthetases class II (A) PU02_RS04205 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PU02_RS04205 PF02272 DHHA1 domain PU02_RS04210 PF00005 ABC transporter PU02_RS04210 PF00664 ABC transporter transmembrane region PU02_RS04215 PF01479 S4 domain PU02_RS04215 PF00849 RNA pseudouridylate synthase PU02_RS04225 PF00120 Glutamine synthetase, catalytic domain PU02_RS04225 PF03951 Glutamine synthetase, beta-Grasp domain PU02_RS04235 PF17760 UvrA interaction domain PU02_RS04235 PF17755 UvrA DNA-binding domain PU02_RS04240 PF00436 Single-strand binding protein family PU02_RS04245 PF00521 DNA gyrase/topoisomerase IV, subunit A PU02_RS04245 PF03989 DNA gyrase C-terminal domain, beta-propeller PU02_RS04250 PF01467 Cytidylyltransferase-like PU02_RS04255 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PU02_RS04260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PU02_RS04265 PF01702 Queuine tRNA-ribosyltransferase PU02_RS04270 PF07690 Major Facilitator Superfamily PU02_RS04275 PF00180 Isocitrate/isopropylmalate dehydrogenase PU02_RS04285 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded PU02_RS04290 PF01063 Amino-transferase class IV PU02_RS04300 PF00750 tRNA synthetases class I (R) PU02_RS04300 PF05746 DALR anticodon binding domain PU02_RS04300 PF03485 Arginyl tRNA synthetase N terminal domain PU02_RS04305 PF13286 Phosphohydrolase-associated domain PU02_RS04305 PF01966 HD domain PU02_RS04310 PF01521 Iron-sulphur cluster biosynthesis PU02_RS04320 PF02683 Cytochrome C biogenesis protein transmembrane region PU02_RS04325 PF00132 Bacterial transferase hexapeptide (six repeats) PU02_RS04325 PF14602 Hexapeptide repeat of succinyl-transferase PU02_RS04325 PF12804 MobA-like NTP transferase domain PU02_RS04330 PF01380 SIS domain PU02_RS04335 PF00270 DEAD/DEAH box helicase PU02_RS04335 PF17191 RecG wedge domain PU02_RS04335 PF00271 Helicase conserved C-terminal domain PU02_RS04340 PF02811 PHP domain PU02_RS04340 PF07733 Bacterial DNA polymerase III alpha NTPase domain PU02_RS04340 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PU02_RS04340 PF14579 Helix-hairpin-helix motif PU02_RS04345 PF01494 FAD binding domain PU02_RS04355 PF01612 3'-5' exonuclease PU02_RS04355 PF00570 HRDC domain PU02_RS04360 PF01336 OB-fold nucleic acid binding domain PU02_RS04360 PF00152 tRNA synthetases class II (D, K and N) PU02_RS04360 PF02938 GAD domain PU02_RS04365 PF00521 DNA gyrase/topoisomerase IV, subunit A PU02_RS04365 PF03989 DNA gyrase C-terminal domain, beta-propeller PU02_RS04370 PF07690 Major Facilitator Superfamily PU02_RS04375 PF00462 Glutaredoxin PU02_RS04385 PF00586 AIR synthase related protein, N-terminal domain PU02_RS04385 PF02769 AIR synthase related protein, C-terminal domain PU02_RS04385 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PU02_RS04395 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase PU02_RS04400 PF01259 SAICAR synthetase PU02_RS04410 PF00206 Lyase PU02_RS04410 PF10397 Adenylosuccinate lyase C-terminus PU02_RS04415 PF00834 Ribulose-phosphate 3 epimerase family PU02_RS04420 PF01613 Flavin reductase like domain PU02_RS04425 PF01258 Prokaryotic dksA/traR C4-type zinc finger PU02_RS04430 PF08448 PAS fold PU02_RS04430 PF00512 His Kinase A (phospho-acceptor) domain PU02_RS04430 PF00072 Response regulator receiver domain PU02_RS04430 PF13188 PAS domain PU02_RS04430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PU02_RS04435 PF01207 Dihydrouridine synthase (Dus) PU02_RS04440 PF02277 Phosphoribosyltransferase PU02_RS04445 PF01037 Lrp/AsnC ligand binding domain PU02_RS04445 PF13404 AsnC-type helix-turn-helix domain PU02_RS04455 PF00471 Ribosomal protein L33 PU02_RS04460 PF08461 Ribonuclease R winged-helix domain PU02_RS04460 PF08206 Ribonuclease B OB domain PU02_RS04460 PF00773 RNB domain PU02_RS04460 PF00575 S1 RNA binding domain PU02_RS04460 PF17876 Cold shock domain PU02_RS04465 PF13368 Topoisomerase C-terminal repeat PU02_RS04465 PF01751 Toprim domain PU02_RS04465 PF01131 DNA topoisomerase PU02_RS04465 PF01396 Topoisomerase DNA binding C4 zinc finger PU02_RS04470 PF02481 DNA recombination-mediator protein A PU02_RS04470 PF17782 DprA winged helix domain PU02_RS04475 PF02660 Glycerol-3-phosphate acyltransferase PU02_RS04480 PF01979 Amidohydrolase family PU02_RS04485 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PU02_RS04485 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PU02_RS04495 PF03652 Holliday junction resolvase PU02_RS04500 PF02686 Glu-tRNAGln amidotransferase C subunit PU02_RS04505 PF01425 Amidase PU02_RS04510 PF00313 'Cold-shock' DNA-binding domain PU02_RS04520 PF00561 alpha/beta hydrolase fold PU02_RS04530 PF04002 RadC-like JAB domain PU02_RS04535 PF00557 Metallopeptidase family M24 PU02_RS04545 PF01177 Asp/Glu/Hydantoin racemase PU02_RS04550 PF00163 Ribosomal protein S4/S9 N-terminal domain PU02_RS04550 PF01479 S4 domain PU02_RS04555 PF01171 PP-loop family PU02_RS04565 PF03330 Lytic transglycolase PU02_RS04565 PF05036 Sporulation related domain PU02_RS04570 PF02223 Thymidylate kinase PU02_RS04575 PF09115 DNA polymerase III, delta subunit, C terminal PU02_RS04580 PF08264 Anticodon-binding domain of tRNA PU02_RS04580 PF09334 tRNA synthetases class I (M) PU02_RS04585 PF01026 TatD related DNase PU02_RS04590 PF12706 Beta-lactamase superfamily domain PU02_RS04590 PF03099 Biotin/lipoate A/B protein ligase family PU02_RS04595 PF01066 CDP-alcohol phosphatidyltransferase PU02_RS04600 PF01494 FAD binding domain PU02_RS04610 PF00080 Copper/zinc superoxide dismutase (SODC) PU02_RS04615 PF01883 Iron-sulfur cluster assembly protein PU02_RS04620 PF00266 Aminotransferase class-V PU02_RS04625 PF01458 Uncharacterized protein family (UPF0051) PU02_RS04630 PF00005 ABC transporter PU02_RS04635 PF01458 Uncharacterized protein family (UPF0051) PU02_RS04640 PF00266 Aminotransferase class-V PU02_RS04645 PF02129 X-Pro dipeptidyl-peptidase (S15 family) PU02_RS04650 PF00579 tRNA synthetases class I (W and Y) PU02_RS04650 PF01479 S4 domain PU02_RS04655 PF00578 AhpC/TSA family PU02_RS04660 PF03462 PCRF domain PU02_RS04660 PF00472 RF-1 domain PU02_RS04665 PF00912 Transglycosylase PU02_RS04665 PF00905 Penicillin binding protein transpeptidase domain PU02_RS04665 PF17092 Penicillin-binding protein OB-like domain PU02_RS04670 PF11741 AMIN domain PU02_RS04670 PF01520 N-acetylmuramoyl-L-alanine amidase PU02_RS04675 PF10150 Ribonuclease E/G family PU02_RS04675 PF00575 S1 RNA binding domain PU02_RS04675 PF12111 Polyribonucleotide phosphorylase C terminal PU02_RS04685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PU02_RS04690 PF02559 CarD-like/TRCF domain PU02_RS04690 PF00270 DEAD/DEAH box helicase PU02_RS04690 PF17757 UvrB interaction domain PU02_RS04690 PF03461 TRCF domain PU02_RS04690 PF00271 Helicase conserved C-terminal domain PU02_RS04695 PF03937 Flavinator of succinate dehydrogenase PU02_RS04700 PF00005 ABC transporter PU02_RS04705 PF12704 MacB-like periplasmic core domain PU02_RS04705 PF02687 FtsX-like permease family PU02_RS04710 PF03129 Anticodon binding domain PU02_RS04710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PU02_RS04715 PF17770 Ribonuclease J C-terminal domain PU02_RS04715 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PU02_RS04715 PF12706 Beta-lactamase superfamily domain PU02_RS04720 PF02237 Biotin protein ligase C terminal domain PU02_RS04720 PF03099 Biotin/lipoate A/B protein ligase family PU02_RS04725 PF00361 Proton-conducting membrane transporter PU02_RS04730 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus PU02_RS04730 PF00361 Proton-conducting membrane transporter PU02_RS04735 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PU02_RS04735 PF00361 Proton-conducting membrane transporter PU02_RS04740 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PU02_RS04745 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PU02_RS04750 PF12838 4Fe-4S dicluster domain PU02_RS04755 PF00146 NADH dehydrogenase PU02_RS04760 PF00384 Molybdopterin oxidoreductase PU02_RS04760 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PU02_RS04760 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal PU02_RS04765 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PU02_RS04765 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PU02_RS04765 PF10531 SLBB domain PU02_RS04775 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PU02_RS04780 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PU02_RS04785 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PU02_RS04790 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PU02_RS04810 PF04536 TPM domain PU02_RS04815 PF03099 Biotin/lipoate A/B protein ligase family PU02_RS04820 PF01751 Toprim domain PU02_RS04820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PU02_RS04820 PF00986 DNA gyrase B subunit, carboxyl terminus PU02_RS04820 PF00204 DNA gyrase B PU02_RS04825 PF02272 DHHA1 domain PU02_RS04825 PF01368 DHH family PU02_RS04825 PF17768 RecJ OB domain PU02_RS04830 PF00572 Ribosomal protein L13 PU02_RS04835 PF00380 Ribosomal protein S9/S16 PU02_RS04840 PF00072 Response regulator receiver domain PU02_RS04845 PF01510 N-acetylmuramoyl-L-alanine amidase PU02_RS04870 PF01594 AI-2E family transporter PU02_RS04875 PF02769 AIR synthase related protein, C-terminal domain PU02_RS04875 PF00586 AIR synthase related protein, N-terminal domain PU02_RS04880 PF00551 Formyl transferase PU02_RS04890 PF00364 Biotin-requiring enzyme PU02_RS04895 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PU02_RS04895 PF00289 Biotin carboxylase, N-terminal domain PU02_RS04895 PF02785 Biotin carboxylase C-terminal domain PU02_RS04915 PF01227 GTP cyclohydrolase I PU02_RS04925 PF01809 Putative membrane protein insertion efficiency factor PU02_RS04930 PF03129 Anticodon binding domain PU02_RS04930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PU02_RS04930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PU02_RS04935 PF13411 MerR HTH family regulatory protein PU02_RS04940 PF00216 Bacterial DNA-binding protein PU02_RS04945 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PU02_RS04945 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PU02_RS04950 PF02504 Fatty acid synthesis protein PU02_RS04965 PF01029 NusB family PU02_RS04970 PF00885 6,7-dimethyl-8-ribityllumazine synthase PU02_RS04975 PF00677 Lumazine binding domain PU02_RS04980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PU02_RS04980 PF01872 RibD C-terminal domain PU02_RS04985 PF03477 ATP cone domain PU02_RS04990 PF00464 Serine hydroxymethyltransferase PU02_RS04995 PF01118 Semialdehyde dehydrogenase, NAD binding domain PU02_RS05000 PF02628 Cytochrome oxidase assembly protein PU02_RS05005 PF01926 50S ribosome-binding GTPase PU02_RS05005 PF13167 GTP-binding GTPase N-terminal PU02_RS05005 PF16360 GTP-binding GTPase Middle Region PU02_RS05010 PF17209 Hfq protein PU02_RS05020 PF01515 Phosphate acetyl/butaryl transferase PU02_RS05020 PF03949 Malic enzyme, NAD binding domain PU02_RS05020 PF00390 Malic enzyme, N-terminal domain PU02_RS05025 PF00550 Phosphopantetheine attachment site PU02_RS05030 PF00109 Beta-ketoacyl synthase, N-terminal domain PU02_RS05030 PF02801 Beta-ketoacyl synthase, C-terminal domain PU02_RS05035 PF00109 Beta-ketoacyl synthase, N-terminal domain PU02_RS05035 PF02801 Beta-ketoacyl synthase, C-terminal domain PU02_RS05040 PF08240 Alcohol dehydrogenase GroES-like domain PU02_RS05040 PF00107 Zinc-binding dehydrogenase PU02_RS05050 PF01521 Iron-sulphur cluster biosynthesis PU02_RS05060 PF00011 Hsp20/alpha crystallin family PU02_RS05065 PF00072 Response regulator receiver domain PU02_RS05080 PF01513 ATP-NAD kinase PU02_RS05090 PF00749 tRNA synthetases class I (E and Q), catalytic domain PU02_RS05095 PF02540 NAD synthase PU02_RS05095 PF00795 Carbon-nitrogen hydrolase PU02_RS05100 PF07992 Pyridine nucleotide-disulphide oxidoreductase PU02_RS05100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PU02_RS05110 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PU02_RS05115 PF00753 Metallo-beta-lactamase superfamily PU02_RS05115 PF03772 Competence protein PU02_RS05120 PF00749 tRNA synthetases class I (E and Q), catalytic domain PU02_RS05125 PF00285 Citrate synthase, C-terminal domain PU02_RS05130 PF00497 Bacterial extracellular solute-binding proteins, family 3 PU02_RS05135 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS05140 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS05145 PF02684 Lipid-A-disaccharide synthetase PU02_RS05150 PF06230 LpxI C-terminal domain PU02_RS05150 PF17930 LpxI N-terminal domain PU02_RS05155 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PU02_RS05155 PF00132 Bacterial transferase hexapeptide (six repeats) PU02_RS05160 PF07977 FabA-like domain PU02_RS05165 PF00132 Bacterial transferase hexapeptide (six repeats) PU02_RS05165 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PU02_RS05170 PF01103 Surface antigen PU02_RS05170 PF07244 Surface antigen variable number repeat PU02_RS05175 PF17820 PDZ domain PU02_RS05175 PF02163 Peptidase family M50 PU02_RS05185 PF01765 Ribosome recycling factor PU02_RS05190 PF00696 Amino acid kinase family PU02_RS05195 PF00889 Elongation factor TS PU02_RS05200 PF00318 Ribosomal protein S2 PU02_RS05215 PF01230 HIT domain PU02_RS05220 PF10431 C-terminal, D2-small domain, of ClpB protein PU02_RS05220 PF02861 Clp amino terminal domain, pathogenicity island component PU02_RS05220 PF17871 AAA lid domain PU02_RS05220 PF07724 AAA domain (Cdc48 subfamily) PU02_RS05220 PF00004 ATPase family associated with various cellular activities (AAA) PU02_RS05225 PF02617 ATP-dependent Clp protease adaptor protein ClpS PU02_RS05230 PF07943 Penicillin-binding protein 5, C-terminal domain PU02_RS05230 PF00768 D-alanyl-D-alanine carboxypeptidase PU02_RS05235 PF03315 Serine dehydratase beta chain PU02_RS05235 PF03313 Serine dehydratase alpha chain PU02_RS05240 PF00881 Nitroreductase family PU02_RS05245 PF04998 RNA polymerase Rpb1, domain 5 PU02_RS05245 PF04983 RNA polymerase Rpb1, domain 3 PU02_RS05245 PF05000 RNA polymerase Rpb1, domain 4 PU02_RS05245 PF00623 RNA polymerase Rpb1, domain 2 PU02_RS05245 PF04997 RNA polymerase Rpb1, domain 1 PU02_RS05250 PF00562 RNA polymerase Rpb2, domain 6 PU02_RS05250 PF10385 RNA polymerase beta subunit external 1 domain PU02_RS05250 PF04565 RNA polymerase Rpb2, domain 3 PU02_RS05250 PF04561 RNA polymerase Rpb2, domain 2 PU02_RS05250 PF04563 RNA polymerase beta subunit PU02_RS05250 PF04560 RNA polymerase Rpb2, domain 7 PU02_RS05255 PF00542 Ribosomal protein L7/L12 C-terminal domain PU02_RS05255 PF16320 Ribosomal protein L7/L12 dimerisation domain PU02_RS05260 PF00466 Ribosomal protein L10 PU02_RS05265 PF00687 Ribosomal protein L1p/L10e family PU02_RS05270 PF00298 Ribosomal protein L11, RNA binding domain PU02_RS05270 PF03946 Ribosomal protein L11, N-terminal domain PU02_RS05275 PF02357 Transcription termination factor nusG PU02_RS05275 PF00467 KOW motif PU02_RS05290 PF03143 Elongation factor Tu C-terminal domain PU02_RS05290 PF03144 Elongation factor Tu domain 2 PU02_RS05290 PF00009 Elongation factor Tu GTP binding domain PU02_RS05305 PF08032 RNA 2'-O ribose methyltransferase substrate binding PU02_RS05305 PF00588 SpoU rRNA Methylase family PU02_RS05320 PF02934 GatB/GatE catalytic domain PU02_RS05320 PF02637 GatB domain PU02_RS05325 PF05697 Bacterial trigger factor protein (TF) PU02_RS05325 PF05698 Bacterial trigger factor protein (TF) C-terminus PU02_RS05325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PU02_RS05340 PF00216 Bacterial DNA-binding protein PU02_RS05345 PF02190 ATP-dependent protease La (LON) substrate-binding domain PU02_RS05345 PF05362 Lon protease (S16) C-terminal proteolytic domain PU02_RS05345 PF00004 ATPase family associated with various cellular activities (AAA) PU02_RS05350 PF10431 C-terminal, D2-small domain, of ClpB protein PU02_RS05350 PF06689 ClpX C4-type zinc finger PU02_RS05350 PF07724 AAA domain (Cdc48 subfamily) PU02_RS05355 PF00574 Clp protease PU02_RS05360 PF02254 TrkA-N domain PU02_RS05360 PF02080 TrkA-C domain PU02_RS05365 PF02954 Bacterial regulatory protein, Fis family PU02_RS05365 PF00072 Response regulator receiver domain PU02_RS05365 PF00158 Sigma-54 interaction domain PU02_RS05370 PF00672 HAMP domain PU02_RS05370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PU02_RS05370 PF00512 His Kinase A (phospho-acceptor) domain PU02_RS05370 PF00989 PAS fold PU02_RS05375 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PU02_RS05375 PF02542 YgbB family PU02_RS05380 PF03364 Polyketide cyclase / dehydrase and lipid transport PU02_RS05385 PF04055 Radical SAM superfamily PU02_RS05390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PU02_RS05390 PF07992 Pyridine nucleotide-disulphide oxidoreductase PU02_RS05395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PU02_RS05395 PF02817 e3 binding domain PU02_RS05395 PF00364 Biotin-requiring enzyme PU02_RS05400 PF00364 Biotin-requiring enzyme PU02_RS05400 PF02779 Transketolase, pyrimidine binding domain PU02_RS05400 PF02780 Transketolase, C-terminal domain PU02_RS05405 PF00676 Dehydrogenase E1 component PU02_RS05415 PF03952 Enolase, N-terminal domain PU02_RS05415 PF00113 Enolase, C-terminal TIM barrel domain PU02_RS05420 PF00793 DAHP synthetase I family PU02_RS05425 PF00117 Glutamine amidotransferase class-I PU02_RS05425 PF06418 CTP synthase N-terminus PU02_RS05430 PF03840 Preprotein translocase SecG subunit PU02_RS05435 PF00121 Triosephosphate isomerase PU02_RS05440 PF13145 PPIC-type PPIASE domain PU02_RS05455 PF02699 Preprotein translocase subunit PU02_RS05460 PF01476 LysM domain PU02_RS05460 PF01551 Peptidase family M23 PU02_RS05470 PF02403 Seryl-tRNA synthetase N-terminal domain PU02_RS05470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PU02_RS05475 PF00902 Sec-independent protein translocase protein (TatC) PU02_RS05480 PF02416 mttA/Hcf106 family PU02_RS05485 PF02416 mttA/Hcf106 family PU02_RS05490 PF01915 Glycosyl hydrolase family 3 C-terminal domain PU02_RS05490 PF00933 Glycosyl hydrolase family 3 N terminal domain PU02_RS05495 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PU02_RS05500 PF01541 GIY-YIG catalytic domain PU02_RS05500 PF12826 Helix-hairpin-helix motif PU02_RS05500 PF02151 UvrB/uvrC motif PU02_RS05500 PF08459 UvrC Helix-hairpin-helix N-terminal PU02_RS05505 PF01066 CDP-alcohol phosphatidyltransferase PU02_RS05510 PF00334 Nucleoside diphosphate kinase PU02_RS05515 PF03212 Pertactin PU02_RS05515 PF03797 Autotransporter beta-domain PU02_RS05515 PF13018 Extended Signal Peptide of Type V secretion system PU02_RS05515 PF16168 Adhesin of bacterial autotransporter system, probable stalk PU02_RS05545 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PU02_RS05550 PF00398 Ribosomal RNA adenine dimethylase PU02_RS05555 PF00625 Guanylate kinase PU02_RS05560 PF02618 YceG-like family PU02_RS05565 PF00109 Beta-ketoacyl synthase, N-terminal domain PU02_RS05565 PF02801 Beta-ketoacyl synthase, C-terminal domain PU02_RS05570 PF00550 Phosphopantetheine attachment site PU02_RS05580 PF00698 Acyl transferase domain PU02_RS05585 PF01569 PAP2 superfamily PU02_RS05590 PF01250 Ribosomal protein S6 PU02_RS05595 PF01084 Ribosomal protein S18 PU02_RS05605 PF03948 Ribosomal protein L9, C-terminal domain PU02_RS05605 PF01281 Ribosomal protein L9, N-terminal domain PU02_RS05610 PF03796 DnaB-like helicase C terminal domain PU02_RS05610 PF00772 DnaB-like helicase N terminal domain PU02_RS05615 PF18073 Rubredoxin metal binding domain PU02_RS05615 PF06745 KaiC PU02_RS05625 PF00156 Phosphoribosyl transferase domain PU02_RS05625 PF13537 Glutamine amidotransferase domain PU02_RS05630 PF00106 short chain dehydrogenase PU02_RS05635 PF01066 CDP-alcohol phosphatidyltransferase PU02_RS05640 PF02666 Phosphatidylserine decarboxylase PU02_RS05645 PF00664 ABC transporter transmembrane region PU02_RS05645 PF00005 ABC transporter PU02_RS05650 PF01406 tRNA synthetases class I (C) catalytic domain PU02_RS05655 PF01979 Amidohydrolase family PU02_RS05665 PF02548 Ketopantoate hydroxymethyltransferase PU02_RS05670 PF02569 Pantoate-beta-alanine ligase PU02_RS05675 PF02565 Recombination protein O C terminal PU02_RS05675 PF11967 Recombination protein O N terminal PU02_RS05680 PF01926 50S ribosome-binding GTPase PU02_RS05680 PF07650 KH domain PU02_RS05685 PF00035 Double-stranded RNA binding motif PU02_RS05685 PF14622 Ribonuclease-III-like PU02_RS05690 PF10502 Signal peptidase, peptidase S26 PU02_RS05695 PF01648 4'-phosphopantetheinyl transferase superfamily PU02_RS05705 PF00156 Phosphoribosyl transferase domain PU02_RS05710 PF04607 Region found in RelA / SpoT proteins PU02_RS05710 PF13291 ACT domain PU02_RS05710 PF02824 TGS domain PU02_RS05715 PF01192 RNA polymerase Rpb6 PU02_RS05720 PF03167 Uracil DNA glycosylase superfamily PU02_RS05725 PF01668 SmpB protein PU02_RS05730 PF00701 Dihydrodipicolinate synthetase family PU02_RS05735 PF01464 Transglycosylase SLT domain PU02_RS05740 PF03544 Gram-negative bacterial TonB protein C-terminal PU02_RS05745 PF00593 TonB dependent receptor PU02_RS05745 PF07715 TonB-dependent Receptor Plug Domain PU02_RS05745 PF04886 PT repeat PU02_RS05750 PF05171 Haemin-degrading HemS.ChuX domain PU02_RS05755 PF01497 Periplasmic binding protein PU02_RS05765 PF00005 ABC transporter PU02_RS05780 PF02530 Porin subfamily PU02_RS05785 PF01964 Radical SAM ThiC family PU02_RS05785 PF13667 ThiC-associated domain PU02_RS05790 PF01266 FAD dependent oxidoreductase PU02_RS05800 PF05690 Thiazole biosynthesis protein ThiG PU02_RS05805 PF02581 Thiamine monophosphate synthase PU02_RS05820 PF11940 Domain of unknown function (DUF3458) Ig-like fold PU02_RS05820 PF17432 Domain of unknown function (DUF3458_C) ARM repeats PU02_RS05820 PF01433 Peptidase family M1 domain PU02_RS05825 PF00989 PAS fold PU02_RS05825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PU02_RS05825 PF00512 His Kinase A (phospho-acceptor) domain PU02_RS05830 PF00512 His Kinase A (phospho-acceptor) domain PU02_RS05830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PU02_RS05830 PF00672 HAMP domain PU02_RS05835 PF00072 Response regulator receiver domain PU02_RS05835 PF00486 Transcriptional regulatory protein, C terminal PU02_RS05840 PF13180 PDZ domain PU02_RS05840 PF17820 PDZ domain PU02_RS05845 PF03918 Cytochrome C biogenesis protein PU02_RS05850 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal PU02_RS05850 PF01578 Cytochrome C assembly protein PU02_RS05855 PF03100 CcmE PU02_RS05870 PF17264 Family of unknown function (DUF5330) PU02_RS05875 PF02657 Fe-S metabolism associated domain PU02_RS05880 PF05443 ROS/MUCR transcriptional regulator protein PU02_RS05885 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain PU02_RS05885 PF00326 Prolyl oligopeptidase family PU02_RS05890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PU02_RS05890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PU02_RS05900 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PU02_RS05900 PF00391 PEP-utilising enzyme, mobile domain PU02_RS05900 PF02896 PEP-utilising enzyme, TIM barrel domain PU02_RS05905 PF13462 Thioredoxin PU02_RS05915 PF00730 HhH-GPD superfamily base excision DNA repair protein PU02_RS05915 PF14815 NUDIX domain PU02_RS05920 PF01555 DNA methylase PU02_RS05920 PF18755 Restriction Enzyme Adenine Methylase Associated PU02_RS05930 PF05193 Peptidase M16 inactive domain PU02_RS05930 PF00675 Insulinase (Peptidase family M16) PU02_RS05935 PF00990 Diguanylate cyclase, GGDEF domain PU02_RS05935 PF00563 EAL domain PU02_RS05935 PF13185 GAF domain PU02_RS05940 PF02622 Uncharacterized ACR, COG1678 PU02_RS05950 PF00075 RNase H PU02_RS05955 PF02401 LytB protein PU02_RS05970 PF01523 Putative modulator of DNA gyrase PU02_RS05975 PF05958 tRNA (Uracil-5-)-methyltransferase PU02_RS05980 PF01479 S4 domain PU02_RS05980 PF01728 FtsJ-like methyltransferase PU02_RS05985 PF02780 Transketolase, C-terminal domain PU02_RS05985 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PU02_RS05985 PF02779 Transketolase, pyrimidine binding domain PU02_RS05990 PF02609 Exonuclease VII small subunit PU02_RS05995 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PU02_RS05995 PF00925 GTP cyclohydrolase II PU02_RS06005 PF01556 DnaJ C terminal domain PU02_RS06005 PF00226 DnaJ domain PU02_RS06010 PF01243 Pyridoxamine 5'-phosphate oxidase PU02_RS06010 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PU02_RS06020 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PU02_RS06020 PF02843 Phosphoribosylglycinamide synthetase, C domain PU02_RS06020 PF02844 Phosphoribosylglycinamide synthetase, N domain PU02_RS06030 PF01565 FAD binding domain PU02_RS06030 PF02913 FAD linked oxidases, C-terminal domain PU02_RS06035 PF03481 Putative GTP-binding controlling metal-binding PU02_RS06035 PF01300 Telomere recombination PU02_RS06040 PF01351 Ribonuclease HII PU02_RS06045 PF08544 GHMP kinases C terminal PU02_RS06050 PF06965 Na+/H+ antiporter 1 PU02_RS06050 PF01343 Peptidase family S49 PU02_RS06060 PF00348 Polyprenyl synthetase PU02_RS06070 PF02091 Glycyl-tRNA synthetase alpha subunit PU02_RS06075 PF02092 Glycyl-tRNA synthetase beta subunit PU02_RS06075 PF05746 DALR anticodon binding domain PU02_RS06080 PF00430 ATP synthase B/B' CF(0) PU02_RS06085 PF00430 ATP synthase B/B' CF(0) PU02_RS06090 PF00137 ATP synthase subunit C PU02_RS06095 PF00119 ATP synthase A chain PU02_RS06105 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PU02_RS06105 PF01926 50S ribosome-binding GTPase PU02_RS06120 PF06965 Na+/H+ antiporter 1 PU02_RS06130 PF00696 Amino acid kinase family PU02_RS06130 PF01842 ACT domain PU02_RS06130 PF13840 ACT domain PU02_RS06135 PF08241 Methyltransferase domain PU02_RS06140 PF00462 Glutaredoxin PU02_RS06150 PF08241 Methyltransferase domain PU02_RS06155 PF00375 Sodium:dicarboxylate symporter family PU02_RS06160 PF00293 NUDIX domain PU02_RS06165 PF01960 ArgJ family PU02_RS06180 PF01043 SecA preprotein cross-linking domain PU02_RS06180 PF07517 SecA DEAD-like domain PU02_RS06180 PF02810 SEC-C motif PU02_RS06180 PF07516 SecA Wing and Scaffold domain PU02_RS06185 PF01475 Ferric uptake regulator family PU02_RS06190 PF03462 PCRF domain PU02_RS06190 PF00472 RF-1 domain PU02_RS06195 PF05175 Methyltransferase small domain PU02_RS06195 PF17827 PrmC N-terminal domain PU02_RS06200 PF00268 Ribonucleotide reductase, small chain PU02_RS06205 PF08343 Ribonucleotide reductase N-terminal PU02_RS06205 PF02867 Ribonucleotide reductase, barrel domain PU02_RS06205 PF00317 Ribonucleotide reductase, all-alpha domain PU02_RS06210 PF07972 NrdI Flavodoxin like PU02_RS06220 PF00005 ABC transporter PU02_RS06225 PF00950 ABC 3 transport family PU02_RS06230 PF01297 Zinc-uptake complex component A periplasmic PU02_RS06235 PF13416 Bacterial extracellular solute-binding protein PU02_RS06240 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS06245 PF00528 Binding-protein-dependent transport system inner membrane component PU02_RS06250 PF00005 ABC transporter PU02_RS06260 PF00117 Glutamine amidotransferase class-I PU02_RS06260 PF02540 NAD synthase PU02_RS06260 PF00958 GMP synthase C terminal domain PU02_RS06265 PF01189 16S rRNA methyltransferase RsmB/F PU02_RS06265 PF01029 NusB family PU02_RS06270 PF00571 CBS domain PU02_RS06270 PF00478 IMP dehydrogenase / GMP reductase domain PU02_RS06275 PF00158 Sigma-54 interaction domain PU02_RS06275 PF01590 GAF domain PU02_RS06275 PF02954 Bacterial regulatory protein, Fis family PU02_RS06285 PF00571 CBS domain PU02_RS06285 PF01380 SIS domain PU02_RS06290 PF00483 Nucleotidyl transferase PU02_RS06295 PF13406 Transglycosylase SLT domain PU02_RS06300 PF01432 Peptidase family M3 PU02_RS06305 PF01769 Divalent cation transporter PU02_RS06305 PF03448 MgtE intracellular N domain PU02_RS06305 PF00571 CBS domain PU02_RS06310 PF03144 Elongation factor Tu domain 2 PU02_RS06310 PF00009 Elongation factor Tu GTP binding domain PU02_RS06310 PF00679 Elongation factor G C-terminus PU02_RS06315 PF00719 Inorganic pyrophosphatase PU02_RS06320 PF02594 Uncharacterised ACR, YggU family COG1872 PU02_RS06330 PF06776 Invasion associated locus B (IalB) protein PU02_RS06335 PF00293 NUDIX domain PU02_RS06340 PF03572 Peptidase family S41 PU02_RS06340 PF13180 PDZ domain PU02_RS06350 PF02590 Predicted SPOUT methyltransferase PU02_RS06360 PF01467 Cytidylyltransferase-like PU02_RS06365 PF00171 Aldehyde dehydrogenase family PU02_RS06370 PF01472 PUA domain PU02_RS06370 PF00696 Amino acid kinase family PU02_RS06375 PF01926 50S ribosome-binding GTPase PU02_RS06375 PF01018 GTP1/OBG PU02_RS06380 PF01728 FtsJ-like methyltransferase PU02_RS06385 PF03895 YadA-like membrane anchor domain PU02_RS06385 PF03895 YadA-like membrane anchor domain PU02_RS06385 PF05662 Coiled stalk of trimeric autotransporter adhesin PU02_RS06385 PF05658 Head domain of trimeric autotransporter adhesin PU02_RS06385 PF05658 Head domain of trimeric autotransporter adhesin PU02_RS06385 PF05662 Coiled stalk of trimeric autotransporter adhesin PU02_RS06390 PF05662 Coiled stalk of trimeric autotransporter adhesin PU02_RS06390 PF05658 Head domain of trimeric autotransporter adhesin PU02_RS06390 PF03895 YadA-like membrane anchor domain PU02_RS06390 PF05662 Coiled stalk of trimeric autotransporter adhesin PU02_RS06390 PF05658 Head domain of trimeric autotransporter adhesin PU02_RS06390 PF03895 YadA-like membrane anchor domain PU02_RS06395 PF05658 Head domain of trimeric autotransporter adhesin PU02_RS06395 PF03895 YadA-like membrane anchor domain PU02_RS06395 PF05662 Coiled stalk of trimeric autotransporter adhesin