locus-tag	class	description
BH_RS00005	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BH_RS00010	COG0424	maF-like protein
BH_RS00015	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BH_RS00020	COG0237	dephospho-CoA kinase activity
BH_RS00030	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BH_RS00030	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BH_RS00040	COG0670	Belongs to the BI1 family
BH_RS00050	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BH_RS00060	COG0116	Belongs to the methyltransferase superfamily
BH_RS00060	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BH_RS00070	COG0776	regulation of translation
BH_RS00085	COG1137	ATPase activity
BH_RS00095	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BH_RS00105	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BH_RS00110	COG1280	lysine exporter protein (LysE YggA)
BH_RS00125	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BH_RS00140	COG2887	Belongs to the helicase family. UvrD subfamily
BH_RS00145	COG3178	'Phosphotransferase
BH_RS00155	COG0802	atpase or kinase
BH_RS00160	COG2205	protein histidine kinase activity
BH_RS00165	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BH_RS00175	COG0285	dihydrofolate synthase activity
BH_RS00180	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BH_RS00190	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BH_RS00195	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BH_RS00200	COG2226	methyltransferase
BH_RS00210	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BH_RS00215	COG0606	chelatase, subunit chli
BH_RS00230	COG1132	(ABC) transporter
BH_RS00235	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BH_RS00250	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BH_RS00255	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BH_RS00260	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BH_RS00265	COG1420	regulation of RNA biosynthetic process
BH_RS00270	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BH_RS00285	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BH_RS00285	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BH_RS00295	COG2205	protein histidine kinase activity
BH_RS00300	COG0745	RESPONSE REGULATOR receiver
BH_RS00305	COG1652	LysM domain
BH_RS00315	COG0443	Heat shock 70 kDa protein
BH_RS00320	COG0484	heat shock protein binding
BH_RS00330	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BH_RS00335	COG0697	spore germination
BH_RS00340	COG0481	GTPase activity
BH_RS00345	COG2171	N-acyltransferase activity
BH_RS00355	COG0101	tRNA pseudouridine synthase activity
BH_RS00360	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BH_RS00365	COG0242	peptide deformylase activity
BH_RS00395	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BH_RS00400	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BH_RS00405	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BH_RS00410	COG0072	phenylalanine-tRNA ligase activity
BH_RS00410	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BH_RS00420	COG1121	(ABC) transporter
BH_RS00425	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BH_RS00430	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BH_RS00435	COG2832	Protein of unknown function (DUF454)
BH_RS00445	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BH_RS00450	COG3459	Glycosyltransferase 36 associated
BH_RS00455	COG0539	negative regulation of cytoplasmic translation
BH_RS00460	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BH_RS00465	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BH_RS00485	COG0129	dihydroxy-acid dehydratase activity
BH_RS00495	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BH_RS00500	COG0280	phosphate acetyltransferase
BH_RS00500	COG0281	malic enzyme
BH_RS00505	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BH_RS00510	COG3030	protein affecting phage T7 exclusion by the F plasmid
BH_RS00530	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BH_RS00540	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BH_RS00545	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BH_RS00550	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BH_RS00555	COG4133	protoheme IX ABC transporter activity
BH_RS00560	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BH_RS00565	COG0268	Binds directly to 16S ribosomal RNA
BH_RS00570	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BH_RS00585	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BH_RS00590	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BH_RS00595	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BH_RS00605	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BH_RS00610	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BH_RS00615	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BH_RS00625	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BH_RS00640	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BH_RS00655	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BH_RS00660	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BH_RS00665	COG0166	Belongs to the GPI family
BH_RS00675	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BH_RS00680	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BH_RS00685	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BH_RS00685	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BH_RS00765	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BH_RS00775	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BH_RS00780	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BH_RS00785	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BH_RS00790	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BH_RS00795	COG0799	negative regulation of ribosome biogenesis
BH_RS00800	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BH_RS00810	COG0793	Belongs to the peptidase S41A family
BH_RS00815	COG0494	nUDIX hydrolase
BH_RS00820	COG5342	invasion associated locus B
BH_RS00830	COG1872	DUF167
BH_RS00835	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BH_RS00840	COG1217	gtp-binding protein TYPA
BH_RS00845	COG2239	Acts as a magnesium transporter
BH_RS00850	COG0339	signal peptide processing
BH_RS00860	COG2951	lytic endotransglycosylase activity
BH_RS00865	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BH_RS00870	COG0517	IMP dehydrogenase activity
BH_RS00870	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BH_RS00885	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BH_RS00900	COG0519	Catalyzes the synthesis of GMP from XMP
BH_RS00900	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BH_RS00905	COG0584	glycerophosphoryl diester phosphodiesterase
BH_RS00910	COG3842	ATPase activity
BH_RS00915	COG0395	ABC-type sugar transport system, permease component
BH_RS00920	COG1175	transmembrane transport
BH_RS00930	COG0803	Belongs to the bacterial solute-binding protein 9 family
BH_RS00935	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BH_RS00940	COG1121	(ABC) transporter
BH_RS00950	COG1780	Probably involved in ribonucleotide reductase function
BH_RS00955	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BH_RS00965	COG2890	protein-(glutamine-N5) methyltransferase activity
BH_RS00970	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BH_RS00980	COG0653	protein targeting
BH_RS00985	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BH_RS00990	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
BH_RS00995	COG0494	nUDIX hydrolase
BH_RS01005	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BH_RS01010	COG1072	(Pantothenic acid kinase))
BH_RS01015	COG0252	asparaginase activity
BH_RS01020	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BH_RS01025	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BH_RS01030	COG2813	Specifically methylates the guanine in position
BH_RS01035	COG1185	polyribonucleotide nucleotidyltransferase activity
BH_RS01040	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BH_RS01050	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BH_RS01055	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BH_RS01060	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BH_RS01075	COG0779	Required for maturation of 30S ribosomal subunits
BH_RS01080	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BH_RS01085	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BH_RS01090	COG1396	sequence-specific DNA binding
BH_RS01095	COG0815	Transfers the fatty acyl group on membrane lipoproteins
BH_RS01105	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BH_RS01110	COG1702	phosphate starvation-inducible protein PhoH
BH_RS01115	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BH_RS01125	COG1214	PFAM Peptidase M22, glycoprotease
BH_RS01130	COG2855	membrane
BH_RS01135	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BH_RS01140	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BH_RS01145	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BH_RS01160	COG0077	Prephenate dehydratase
BH_RS01160	COG1605	Chorismate mutase
BH_RS01165	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BH_RS01170	COG3474	cytochrome
BH_RS01175	COG4174	ABC transporter (Permease)
BH_RS01180	COG4239	(ABC) transporter, permease
BH_RS01185	COG4172	Belongs to the ABC transporter superfamily
BH_RS01195	COG0189	ligase activity
BH_RS01205	COG0573	inorganic phosphate transmembrane transporter activity
BH_RS01215	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BH_RS01220	COG0704	Plays a role in the regulation of phosphate uptake
BH_RS01240	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BH_RS01260	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BH_RS01265	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BH_RS01270	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BH_RS01275	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BH_RS01285	COG0590	tRNA wobble adenosine to inosine editing
BH_RS01290	COG1187	pseudouridine synthase activity
BH_RS01295	COG0742	ribosomal rna small subunit methyltransferase
BH_RS01310	COG0312	modulator of DNA gyrase
BH_RS01315	COG0483	inositol monophosphate 1-phosphatase activity
BH_RS01330	COG1519	Transferase
BH_RS01335	COG1663	tetraacyldisaccharide 4'-kinase activity
BH_RS01345	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BH_RS01350	COG0717	Belongs to the dCTP deaminase family
BH_RS01355	COG1304	FMN binding
BH_RS01365	COG1113	amino acid transport
BH_RS01370	COG1122	ATPase activity
BH_RS01380	COG1268	BioY protein
BH_RS01430	COG0582	viral genome integration into host DNA
BH_RS01435	COG3561	AntA/AntB antirepressor
BH_RS01440	COG3077	Addiction module antitoxin, RelB DinJ family
BH_RS01445	COG3041	Addiction module toxin RelE StbE family
BH_RS01485	COG3561	AntA/AntB antirepressor
BH_RS01490	COG3561	AntA/AntB antirepressor
BH_RS01605	COG3561	AntA/AntB antirepressor
BH_RS01670	COG3077	Addiction module antitoxin, RelB DinJ family
BH_RS01675	COG3041	Addiction module toxin RelE StbE family
BH_RS01685	COG3561	AntA/AntB antirepressor
BH_RS01690	COG3561	AntA/AntB antirepressor
BH_RS01730	COG0629	single-stranded DNA binding
BH_RS01740	COG3093	addiction module antidote protein HigA
BH_RS01805	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BH_RS01845	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BH_RS01855	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BH_RS01860	COG0564	pseudouridine synthase activity
BH_RS01885	COG1970	mechanosensitive ion channel activity
BH_RS01890	COG0167	dihydroorotate dehydrogenase activity
BH_RS01905	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BH_RS01910	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BH_RS01915	COG0363	glucosamine-6-phosphate deaminase activity
BH_RS01920	COG0129	dihydroxy-acid dehydratase activity
BH_RS01925	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BH_RS01945	COG1823	symporter activity
BH_RS01950	COG2226	methyltransferase
BH_RS01955	COG1040	competence protein
BH_RS01960	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BH_RS01965	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BH_RS01970	COG0527	aspartate kinase activity
BH_RS01975	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
BH_RS01985	COG0471	metal ion transport
BH_RS01985	COG3273	potassium ion transport
BH_RS01995	COG1160	GTP binding
BH_RS02010	COG0356	it plays a direct role in the translocation of protons across the membrane
BH_RS02020	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BH_RS02025	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BH_RS02030	COG0751	glycine-tRNA ligase activity
BH_RS02045	COG0142	geranyltranstransferase activity
BH_RS02060	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BH_RS02070	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BH_RS02075	COG0009	L-threonylcarbamoyladenylate synthase
BH_RS02080	COG0277	FAD linked oxidase domain protein
BH_RS02095	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BH_RS02105	COG0259	pyridoxamine-phosphate oxidase activity
BH_RS02110	COG0484	heat shock protein binding
BH_RS02115	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BH_RS02120	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BH_RS02125	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BH_RS02125	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BH_RS02130	COG1722	exodeoxyribonuclease VII activity
BH_RS02135	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BH_RS02150	COG0312	modulator of DNA gyrase
BH_RS02160	COG0109	protoheme IX farnesyltransferase activity
BH_RS02165	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BH_RS02170	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BH_RS02175	COG0328	RNA-DNA hybrid ribonuclease activity
BH_RS02185	COG1678	Uncharacterized ACR, COG1678
BH_RS02195	COG0612	Peptidase, M16
BH_RS02225	COG2189	Belongs to the N(4) N(6)-methyltransferase family
BH_RS02230	COG1194	a g-specific adenine glycosylase
BH_RS02240	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
BH_RS02240	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BH_RS02245	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BH_RS02245	COG0574	Belongs to the PEP-utilizing enzyme family
BH_RS02260	COG2166	iron-sulfur cluster assembly
BH_RS02275	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BH_RS02300	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BH_RS02325	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BH_RS02330	COG1138	Cytochrome C-type biogenesis protein
BH_RS02335	COG3088	subunit of a heme lyase
BH_RS02340	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BH_RS02345	COG0745	RESPONSE REGULATOR receiver
BH_RS02350	COG0642	Histidine kinase
BH_RS02355	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BH_RS02360	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BH_RS02370	COG2202	Pas domain
BH_RS02370	COG2205	protein histidine kinase activity
BH_RS02375	COG0308	aminopeptidase N
BH_RS02385	COG0351	phosphomethylpyrimidine kinase
BH_RS02395	COG2022	thiamine diphosphate biosynthetic process
BH_RS02410	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BH_RS02425	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
BH_RS02430	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BH_RS02435	COG4558	Periplasmic binding protein
BH_RS02440	COG3720	iron ion transport
BH_RS02445	COG4771	TonB-dependent receptor
BH_RS02455	COG0741	lytic transglycosylase activity
BH_RS02460	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BH_RS02465	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BH_RS02470	COG1573	uracil-dna glycosylase
BH_RS02475	COG1758	RNA polymerase activity
BH_RS02485	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BH_RS02495	COG0736	holo-[acyl-carrier-protein] synthase activity
BH_RS02505	COG0571	ribonuclease III activity
BH_RS02515	COG1381	Involved in DNA repair and RecF pathway recombination
BH_RS02520	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BH_RS02525	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BH_RS02530	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
BH_RS02535	COG0354	folic acid binding
BH_RS02540	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BH_RS02555	COG0215	cysteine-tRNA ligase activity
BH_RS02560	COG2323	membrane
BH_RS02565	COG5265	(ABC) transporter
BH_RS02570	COG0688	phosphatidylethanolamine metabolic process
BH_RS02575	COG1183	phosphatidylcholine synthase activity
BH_RS02580	COG1028	Short-chain dehydrogenase reductase Sdr
BH_RS02585	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BH_RS02600	COG0305	Participates in initiation and elongation during chromosome replication
BH_RS02610	COG0359	binds to the 23S rRNA
BH_RS02620	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BH_RS02625	COG0360	Binds together with S18 to 16S ribosomal RNA
BH_RS02630	COG0671	phosphoesterase, PA-phosphatase related
BH_RS02635	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BH_RS02645	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BH_RS02650	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BH_RS02655	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BH_RS02660	COG0194	GDP metabolic process
BH_RS02665	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BH_RS02670	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BH_RS02680	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BH_RS02705	COG0477	Major facilitator Superfamily
BH_RS02725	COG0488	(ABC) transporter
BH_RS02730	COG0105	UTP biosynthetic process
BH_RS02735	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BH_RS02740	COG0322	excinuclease ABC activity
BH_RS02745	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BH_RS02755	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BH_RS02760	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BH_RS02765	COG0805	protein transport
BH_RS02770	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BH_RS02775	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BH_RS02780	COG1388	LysM domain
BH_RS02780	COG4942	peptidase
BH_RS02785	COG1862	Preprotein translocase
BH_RS02805	COG0149	triose-phosphate isomerase activity
BH_RS02815	COG0504	CTP synthase activity
BH_RS02820	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BH_RS02825	COG0148	phosphopyruvate hydratase activity
BH_RS02845	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BH_RS02850	COG0508	dehydrogenase complex catalyzes the overall conversion of
BH_RS02850	COG0022	dehydrogenase e1 component
BH_RS02855	COG0508	dehydrogenase complex catalyzes the overall conversion of
BH_RS02860	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BH_RS02865	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BH_RS02870	COG2867	negative regulation of translational initiation
BH_RS02875	COG1058	Belongs to the CinA family
BH_RS02875	COG1546	Belongs to the CinA family
BH_RS02880	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BH_RS02880	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BH_RS02885	COG1959	2 iron, 2 sulfur cluster binding
BH_RS02890	COG5000	phosphorelay sensor kinase activity
BH_RS02895	COG2204	response regulator
BH_RS02900	COG0569	domain protein
BH_RS02910	COG0740	serine-type endopeptidase activity
BH_RS02915	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BH_RS02930	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
BH_RS02940	COG0544	peptidyl-prolyl cis-trans isomerase activity
BH_RS02945	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BH_RS02955	COG4765	Protein conserved in bacteria
BH_RS02970	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BH_RS02985	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BH_RS02995	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BH_RS03005	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BH_RS03010	COG0081	regulation of translation
BH_RS03015	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BH_RS03020	COG0222	ribosome binding
BH_RS03025	COG0085	RNA polymerase activity
BH_RS03030	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BH_RS03035	COG0789	Transcriptional regulator
BH_RS03045	COG1760	l-serine dehydratase
BH_RS03055	COG1686	Belongs to the peptidase S11 family
BH_RS03060	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
BH_RS03085	COG0052	Belongs to the universal ribosomal protein uS2 family
BH_RS03090	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BH_RS03095	COG0528	UMP kinase activity
BH_RS03100	COG0233	cytoplasmic translational termination
BH_RS03110	COG0750	zinc metalloprotease
BH_RS03120	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BH_RS03125	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BH_RS03130	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BH_RS03135	COG3494	Protein of unknown function (DUF1009)
BH_RS03140	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BH_RS03145	COG1126	abc transporter atp-binding protein
BH_RS03155	COG4215	(ABC) transporter
BH_RS03165	COG0372	Belongs to the citrate synthase family
BH_RS03170	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BH_RS03180	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BH_RS03195	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
BH_RS03205	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BH_RS03205	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
BH_RS03210	COG0513	Belongs to the DEAD box helicase family
BH_RS03225	COG2986	histidine ammonia-lyase
BH_RS03250	COG2831	hemolysin activation secretion protein
BH_RS03255	COG3210	domain, Protein
BH_RS03255	COG3210	domain, Protein
BH_RS03305	COG2831	hemolysin activation secretion protein
BH_RS03310	COG3210	domain, Protein
BH_RS03310	COG3210	domain, Protein
BH_RS03340	COG3210	domain, Protein
BH_RS03390	COG0582	viral genome integration into host DNA
BH_RS03415	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BH_RS03485	COG0629	single-stranded DNA binding
BH_RS03535	COG2831	hemolysin activation secretion protein
BH_RS03540	COG3210	domain, Protein
BH_RS03540	COG3210	domain, Protein
BH_RS03580	COG3210	domain, Protein
BH_RS03610	COG0071	Belongs to the small heat shock protein (HSP20) family
BH_RS03635	COG0316	Belongs to the HesB IscA family
BH_RS03640	COG3956	TIGRFAM MazG family protein
BH_RS03650	COG1063	alcohol dehydrogenase
BH_RS03655	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BH_RS03665	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BH_RS03670	COG0280	phosphate acetyltransferase
BH_RS03670	COG0281	malic enzyme
BH_RS03680	COG1923	regulation of RNA biosynthetic process
BH_RS03685	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BH_RS03695	COG1612	heme a metabolic process
BH_RS03705	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BH_RS03710	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BH_RS03715	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BH_RS03715	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BH_RS03725	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BH_RS03730	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BH_RS03745	COG0416	fatty acid biosynthetic process
BH_RS03750	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BH_RS03755	COG0776	regulation of translation
BH_RS03765	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BH_RS03770	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BH_RS03780	COG0302	gtp cyclohydrolase
BH_RS03825	COG0784	Response regulator, receiver
BH_RS03830	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BH_RS03835	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BH_RS03840	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BH_RS03845	COG0187	DNA topoisomerase II activity
BH_RS03850	COG0321	lipoyl(octanoyl) transferase activity
BH_RS03855	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
BH_RS03880	COG2831	hemolysin activation secretion protein
BH_RS03915	COG0511	ligase activity, forming carbon-carbon bonds
BH_RS03945	COG1522	sequence-specific DNA binding
BH_RS03950	COG1573	uracil-dna glycosylase
BH_RS03960	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BH_RS03975	COG0557	exoribonuclease II activity
BH_RS03980	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BH_RS03985	COG0758	DNA mediated transformation
BH_RS03990	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
BH_RS03995	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BH_RS04000	COG0540	Belongs to the ATCase OTCase family
BH_RS04010	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BH_RS04015	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BH_RS04020	COG0154	amidase activity
BH_RS04055	COG1278	Cold shock
BH_RS04065	COG0596	Alpha beta hydrolase
BH_RS04080	COG2003	Belongs to the UPF0758 family
BH_RS04085	COG0024	Methionine aminopeptidase
BH_RS04090	COG1489	DNA binding
BH_RS04100	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
BH_RS04105	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BH_RS04110	COG0037	tRNA processing
BH_RS04115	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BH_RS04120	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BH_RS04135	COG1686	Belongs to the peptidase S11 family
BH_RS04140	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BH_RS04150	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BH_RS04155	COG0084	hydrolase, TatD family'
BH_RS04160	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BH_RS04160	COG0321	lipoyl(octanoyl) transferase activity
BH_RS04175	COG1183	phosphatidylcholine synthase activity
BH_RS04180	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BH_RS04195	COG2032	superoxide dismutase activity
BH_RS04215	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BH_RS04220	COG0719	Fe-S assembly protein
BH_RS04225	COG0396	ATPase activity
BH_RS04230	COG0719	Fe-S assembly protein
BH_RS04240	COG2945	thiolester hydrolase activity
BH_RS04245	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BH_RS04250	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BH_RS04260	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BH_RS04265	COG0860	N-Acetylmuramoyl-L-alanine amidase
BH_RS04270	COG1530	ribonuclease E activity
BH_RS04280	COG4166	transmembrane transport
BH_RS04285	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BH_RS04290	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BH_RS04295	COG1136	(ABC) transporter
BH_RS04305	COG0442	prolyl-tRNA aminoacylation
BH_RS04320	COG1007	ATP synthesis coupled electron transport
BH_RS04335	COG0713	ATP synthesis coupled electron transport
BH_RS04345	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BH_RS04350	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BH_RS04360	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BH_RS04365	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BH_RS04370	COG0649	NAD binding
BH_RS04375	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BH_RS04380	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BH_RS04385	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BH_RS04610	COG0629	single-stranded DNA binding
BH_RS04620	COG3093	addiction module antidote protein HigA
BH_RS04650	COG0628	permease
BH_RS04655	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BH_RS04660	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BH_RS04705	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BH_RS04715	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BH_RS04725	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BH_RS04730	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BH_RS04735	COG0047	phosphoribosylformylglycinamidine synthase activity
BH_RS04740	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BH_RS04750	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BH_RS04755	COG2814	Major facilitator Superfamily
BH_RS04760	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BH_RS04765	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BH_RS04770	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
BH_RS04775	COG0248	Ppx GppA phosphatase
BH_RS04780	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BH_RS04790	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BH_RS04800	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BH_RS04825	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BH_RS04830	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BH_RS04835	COG0785	Cytochrome C biogenesis protein
BH_RS04845	COG0316	Belongs to the HesB IscA family
BH_RS04850	COG0232	Belongs to the dGTPase family. Type 2 subfamily
BH_RS04855	COG0018	arginyl-trna synthetase
BH_RS04870	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BH_RS04890	COG0538	isocitrate dehydrogenase activity
BH_RS04900	COG2814	Major facilitator Superfamily
BH_RS04905	COG0343	queuine tRNA-ribosyltransferase activity
BH_RS04920	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BH_RS04925	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BH_RS04930	COG0629	single-stranded DNA binding
BH_RS04940	COG0347	Belongs to the P(II) protein family
BH_RS04945	COG0174	glutamine synthetase
BH_RS04965	COG1132	(ABC) transporter
BH_RS04970	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BH_RS04975	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BH_RS04980	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BH_RS04985	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BH_RS04990	COG0203	ribosomal protein L17
BH_RS04995	COG0202	RNA polymerase activity
BH_RS05000	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BH_RS05005	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BH_RS05010	COG0563	adenylate kinase activity
BH_RS05020	COG0200	Binds to the 23S rRNA
BH_RS05025	COG1841	ribosomal large subunit assembly
BH_RS05030	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BH_RS05035	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BH_RS05040	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BH_RS05045	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BH_RS05050	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BH_RS05055	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BH_RS05060	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BH_RS05065	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BH_RS05070	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BH_RS05075	COG0255	Belongs to the universal ribosomal protein uL29 family
BH_RS05080	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BH_RS05085	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BH_RS05090	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BH_RS05095	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BH_RS05100	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BH_RS05105	COG0089	rRNA binding
BH_RS05110	COG0088	Forms part of the polypeptide exit tunnel
BH_RS05115	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BH_RS05120	COG0051	transcription antitermination factor activity, RNA binding
BH_RS05125	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BH_RS05130	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BH_RS05135	COG0049	tRNA binding
BH_RS05140	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BH_RS05145	COG0708	Exodeoxyribonuclease III
BH_RS05155	COG0765	amino acid transport
BH_RS05160	COG0765	amino acid transport
BH_RS05165	COG1126	abc transporter atp-binding protein
BH_RS05175	COG0525	valine-tRNA ligase activity
BH_RS05190	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BH_RS05215	COG0513	Belongs to the DEAD box helicase family
BH_RS05225	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BH_RS05245	COG1196	nuclear chromosome segregation
BH_RS05245	COG3264	Mechanosensitive ion channel
BH_RS05265	COG1253	flavin adenine dinucleotide binding
BH_RS05285	COG1113	amino acid transport
BH_RS05290	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BH_RS05300	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BH_RS05305	COG0028	Belongs to the TPP enzyme family
BH_RS05310	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BH_RS05320	COG0330	HflC and HflK could
BH_RS05330	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BH_RS05335	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BH_RS05340	COG0477	Major facilitator Superfamily
BH_RS05345	COG0477	Major facilitator Superfamily
BH_RS05350	COG0477	Major facilitator Superfamily
BH_RS05375	COG0210	DNA helicase
BH_RS05385	COG1999	signal sequence binding
BH_RS05395	COG0006	proline dipeptidase activity
BH_RS05410	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BH_RS05415	COG0497	DNA recombination
BH_RS05420	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BH_RS05435	COG0849	cell division
BH_RS05445	COG1181	Belongs to the D-alanine--D-alanine ligase family
BH_RS05450	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BH_RS05455	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BH_RS05460	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BH_RS05470	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BH_RS05475	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BH_RS05485	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BH_RS05500	COG0275	rRNA processing
BH_RS05505	COG0741	lytic transglycosylase activity
BH_RS05535	COG1335	isochorismatase
BH_RS05575	COG2968	Membrane
BH_RS05580	COG2983	Belongs to the UPF0260 family
BH_RS05585	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BH_RS05595	COG0668	transmembrane transport
BH_RS05610	COG3161	chorismate lyase activity
BH_RS05615	COG0505	Belongs to the CarA family
BH_RS05635	COG1278	Cold shock
BH_RS05640	COG0436	Aminotransferase
BH_RS05645	COG0583	DNA-binding transcription factor activity
BH_RS05650	COG0492	ferredoxin-NADP+ reductase activity
BH_RS05655	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BH_RS05665	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BH_RS05675	COG0556	nucleotide-excision repair
BH_RS05685	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BH_RS05690	COG0745	RESPONSE REGULATOR receiver
BH_RS05695	COG2205	protein histidine kinase activity
BH_RS05710	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BH_RS05720	COG1496	oxidoreductase activity
BH_RS05735	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BH_RS05740	COG0193	aminoacyl-tRNA hydrolase activity
BH_RS05750	COG1376	ErfK ybiS ycfS ynhG family protein
BH_RS05755	COG0012	GTP binding
BH_RS05775	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BH_RS05785	COG0714	Associated with various cellular activities
BH_RS05815	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BH_RS05825	COG0482	sulfurtransferase activity
BH_RS05890	COG0444	Belongs to the ABC transporter superfamily
BH_RS05895	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BH_RS05900	COG0601	transmembrane transport
BH_RS05905	COG0747	negative chemotaxis
BH_RS05920	COG0519	Catalyzes the synthesis of GMP from XMP
BH_RS05925	COG1570	exodeoxyribonuclease VII activity
BH_RS05930	COG0747	negative chemotaxis
BH_RS05950	COG0730	response to heat
BH_RS05960	COG2086	electron transfer activity
BH_RS05990	COG0792	nuclease activity
BH_RS05995	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BH_RS06000	COG0489	protein tyrosine kinase activity
BH_RS06005	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BH_RS06010	COG0594	ribonuclease P activity
BH_RS06020	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BH_RS06030	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BH_RS06035	COG0588	phosphoglycerate mutase activity
BH_RS06045	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BH_RS06070	COG3023	N-Acetylmuramoyl-L-alanine amidase
BH_RS06085	COG2814	Major facilitator Superfamily
BH_RS06150	COG0735	belongs to the Fur family
BH_RS06185	COG1054	Belongs to the UPF0176 family
BH_RS06190	COG0800	Aldolase
BH_RS06230	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BH_RS06230	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BH_RS06235	COG0509	glycine decarboxylation via glycine cleavage system
BH_RS06240	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BH_RS06250	COG2835	tetraacyldisaccharide 4'-kinase activity
BH_RS06260	COG1396	sequence-specific DNA binding
BH_RS06265	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BH_RS06275	COG1464	Belongs to the NlpA lipoprotein family
BH_RS06280	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BH_RS06285	COG2011	ABC-type metal ion transport system permease component
BH_RS06440	COG1192	Involved in chromosome partitioning
BH_RS06450	COG0196	riboflavin kinase activity
BH_RS06470	COG3838	Conjugal transfer protein Trbc
BH_RS06475	COG3702	type iv secretory pathway
BH_RS06480	COG3451	type IV secretory pathway VirB4
BH_RS06490	COG3704	protein secretion by the type IV secretion system
BH_RS06500	COG3736	Type IV secretory pathway, component VirB8
BH_RS06505	COG3504	Conjugal transfer protein
BH_RS06510	COG2948	multi-organism process
BH_RS06515	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
BH_RS06525	COG2184	nucleotidyltransferase activity
BH_RS06530	COG3505	Type IV secretory pathway VirD4
BH_RS06540	COG2184	nucleotidyltransferase activity
BH_RS06545	COG2184	nucleotidyltransferase activity
BH_RS06585	COG0728	peptidoglycan biosynthetic process
BH_RS06590	COG0180	Tryptophanyl-tRNA synthetase
BH_RS06600	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BH_RS06605	COG2824	Alkylphosphonate utilization operon protein PhnA
BH_RS06610	COG0459	protein refolding
BH_RS06615	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BH_RS06625	COG1396	sequence-specific DNA binding
BH_RS06630	COG0033	Phosphoglucomutase
BH_RS06660	COG0124	histidyl-tRNA synthetase
BH_RS06670	COG0284	orotidine-5'-phosphate decarboxylase activity
BH_RS06760	COG0739	heme binding
BH_RS06765	COG3920	Histidine kinase
BH_RS06780	COG0784	Response regulator, receiver
BH_RS06940	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
BH_RS06945	COG0424	maF-like protein
BH_RS06950	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BH_RS06955	COG1396	sequence-specific DNA binding
BH_RS06975	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BH_RS06985	COG1396	sequence-specific DNA binding
BH_RS07015	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BH_RS07020	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BH_RS07035	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BH_RS07040	COG0457	Tetratricopeptide repeat
BH_RS07055	COG1396	sequence-specific DNA binding
BH_RS07060	COG1396	sequence-specific DNA binding
BH_RS07095	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BH_RS07320	COG0756	dUTP diphosphatase activity
BH_RS07335	COG0848	biopolymer transport protein
BH_RS07360	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BH_RS07365	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BH_RS07370	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BH_RS07375	COG0037	tRNA processing
BH_RS07395	COG2885	chlorophyll binding
BH_RS07405	COG0217	transcriptional regulatory protein
BH_RS07415	COG0823	Involved in the tonB-independent uptake of proteins
BH_RS07435	COG0824	Thioesterase
BH_RS07440	COG2255	four-way junction helicase activity
BH_RS07445	COG0632	four-way junction helicase activity
BH_RS07450	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
BH_RS07480	COG1396	sequence-specific DNA binding
BH_RS07500	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BH_RS07505	COG0483	inositol monophosphate 1-phosphatase activity
BH_RS07510	COG1132	(ABC) transporter
BH_RS07515	COG0254	rRNA binding
BH_RS07530	COG3588	fructose-bisphosphate aldolase
BH_RS07535	COG0126	phosphoglycerate kinase activity
BH_RS07565	COG0469	pyruvate kinase activity
BH_RS07575	COG3750	Belongs to the UPF0335 family
BH_RS07595	COG0488	(ABC) transporter
BH_RS07615	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BH_RS07625	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BH_RS07635	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BH_RS07640	COG0142	geranyltranstransferase activity
BH_RS07670	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BH_RS07680	COG1566	PFAM secretion protein HlyD family protein
BH_RS07690	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BH_RS07695	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BH_RS07700	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BH_RS07705	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BH_RS07710	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BH_RS07730	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BH_RS07740	COG0495	leucyl-tRNA aminoacylation
BH_RS07755	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BH_RS07760	COG2884	Cell division ATP-binding protein ftsE
BH_RS07780	COG1136	(ABC) transporter
BH_RS07780	COG0577	efflux transmembrane transporter activity
BH_RS07785	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BH_RS07790	COG1538	Outer membrane efflux protein
BH_RS07805	COG1674	ftsk spoiiie
BH_RS07810	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BH_RS07920	COG3504	Conjugal transfer protein
BH_RS07960	COG0335	large ribosomal subunit rRNA binding
BH_RS07965	COG0336	Belongs to the RNA methyltransferase TrmD family
BH_RS07970	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BH_RS08015	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BH_RS08035	COG0138	bifunctional purine biosynthesis protein purh
BH_RS08045	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BH_RS08045	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BH_RS08050	COG0501	Belongs to the peptidase M48B family
BH_RS08060	COG0228	four-way junction DNA binding
BH_RS08070	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BH_RS08075	COG0288	reversible hydration of carbon dioxide
BH_RS08080	COG2902	Dehydrogenase
BH_RS08105	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BH_RS08125	COG0745	RESPONSE REGULATOR receiver
BH_RS08150	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BH_RS08155	COG1671	Belongs to the UPF0178 family
BH_RS08165	COG0287	Prephenate dehydrogenase
BH_RS08175	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
BH_RS08200	COG0351	phosphomethylpyrimidine kinase
BH_RS08210	COG1686	Belongs to the peptidase S11 family
BH_RS08215	COG0523	cobalamin synthesis protein
BH_RS08225	COG3034	peptidoglycan biosynthetic process
BH_RS08230	COG0825	malonyl-CoA metabolic process
BH_RS08240	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BH_RS08245	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BH_RS08260	COG1320	monovalent cation:proton antiporter activity
BH_RS08265	COG2212	antiporter activity
BH_RS08270	COG1863	multisubunit Na H antiporter MnhE subunit
BH_RS08275	COG0651	ATP synthesis coupled electron transport
BH_RS08280	COG1006	Multisubunit Na H antiporter MnhC subunit
BH_RS08285	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BH_RS08285	COG2111	Na H antiporter
BH_RS08295	COG0019	diaminopimelate decarboxylase activity
BH_RS08315	COG0508	dehydrogenase complex catalyzes the overall conversion of
BH_RS08320	COG0567	Dehydrogenase, E1 component
BH_RS08330	COG0045	succinate-CoA ligase (ADP-forming) activity
BH_RS08335	COG0039	L-malate dehydrogenase activity
BH_RS08340	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BH_RS08350	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BH_RS08355	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BH_RS08360	COG0552	protein localization to endoplasmic reticulum
BH_RS08365	COG2917	probably involved in intracellular septation
BH_RS08370	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BH_RS08385	COG0357	Ribosomal RNA small subunit methyltransferase G
BH_RS08390	COG0445	tRNA wobble uridine modification
BH_RS08395	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BH_RS08400	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BH_RS08500	COG0756	dUTP diphosphatase activity