 MF1_RS00015 NONE
 MF1_RS00020 NONE
        dnaQ    3664 ..    3698 +   -10  -2.90392   AAAAGCTAAAAAATA     CGGTCGTTGTGGGG AGGGGAA CACCACAACGACCC     TGTCGTTACACCGTA  76 83
        polA    7026 ..    7042 +  -5.1  -2.85668   AAACGAGAGGGAAAG              CTTGGCA CAG TTCCAAG              TGTGCTATCAAAATA  50 209
 MF1_RS00070 NONE
 MF1_RS00075 NONE
        lptB   15347 ..   15395 + -16.5  -2.85378   TTATTTTTGATCTAC TTTTCTTTCACATAAAGTAAGAA TAA TTATTACTTTATGTGAAAGAAAC TATAATGATCTCATT 100 154
        ptsN   16979 ..   16989 +  -5.4  -3.06696   TTTTGAAGAAATCAT                 TTCC AAA GGAA                 TCTCTTGAAGAAAAG  54 149
 MF1_RS00090 NONE
        rlmN NONE
 MF1_RS00110 NONE
 MF1_RS00115   25478 ..   25502 +  -6.5  -2.57344   TTTAATTTCTATACA          TTGGTATCACG GCA CGTCATATCAA          GTTATAACAAAGATA  56 482
 MF1_RS00185   53799 ..   53812 +  -2.4  -3.69483   GCGGTGATAGGCGCG               TGCA GAAAGA TGCA                TCTTTTCACTCACAT  49 173
 MF1_RS00195 NONE
 MF1_RS00200   62520 ..   62545 +  -2.5  -4.52873   ATTTCACTATCATGA         AGCATTGCTCT GGCA ATAGCGATGCG          TTGTTTTTGTCCACC  62 328
 MF1_RS00215 NONE
 MF1_RS00220   66702 ..   66715 +  -3.1  -3.75153   TAATAATCCTAATTT               TTGAG AACT CTCAG                TTTAGATTGGAAAAG  52 215
        dapE   68000 ..   68010 +  -2.6   -2.7644   GACAGGTTGGAGCGA                 TAAA GAT TTTA                 GTTTGCGAGTTGGCT  41 117
        hrcA   71197 ..   71210 +  -3.9  -2.68799   TTGCGTTAAAACGAT               CAAAT GAAT ATTTG                TACTATAAATTTCAT  45 32
        grpE   72059 ..   72072 +  -8.1  -3.22215   TCAAAGAATTCTAAA               GGGTG TTAA CACCC                TCCTTTTATCCTTGA  70 108
        lysM   77999 ..   78018 +  -9.4  -3.36671   AAACAAAAATAAGAA            GTGTGAAA AAGT TTTCACAC             TTCTAAAGTTAAGAT  79 93
        dnaK   81427 ..   81467 +  -7.2   -3.6215   ACTGTGTTGATCAGA TAATAAA-CCCAGCCTT-TG AAA CATAAGGATGGGCTTTATTA TTTGAGATGAGTTGC  68 49
        dnaJ   82839 ..   82853 +  -4.3    -3.762   TTTTACTGGTTATTT               TAGGA TGCGT TCCTA               TTGTTCGATTGGTTT  57 160
        argB NONE
 MF1_RS00305   86321 ..   86346 +  -2.6  -5.44198   TATGATTTTATTTCG         TGATATTTCC ACTTGA GGAGATTTCA          TTTTTGTTGTTTCTT  76 58
        lepA   88668 ..   88681 +  -8.1  -2.84841   TAAATAATAAAAAAA               GGGAG AATT CTCCC                TCATTAATTGCACTT  67 34
 MF1_RS00320   90868 ..   90878 +    -4  -3.34488   AGTGGTGAAATCATG                 TTGT CCT ACAA                 GTTTTTGAGCAGCTT  50 343
        rmuC NONE
 MF1_RS00345   94933 ..   94943 +  -2.6  -4.13561   CGATGTAAAGGATAT                 TTTT ATA AAAA                 TCTTTTTTGAGAAGA  55 201
         nth   97821 ..   97834 +  -3.1   -3.1886   CCGTGGCTATTTAAA               TGCTT GTTC AAGCG                TTGGTCCGCTTGAGT  47 107
        rpmI   98078 ..   98099 +  -2.9   -3.4557   TTCAATATTATTTAC           CGAATGGTT TTTA AACCTTGCG            CTTTTGATTTTTAGG  47 12
        rplT   98564 ..   98589 +  -5.3   -5.7946   ACATTCATTCGGGAT         CCCGTTCTGGT TTTT GCTAGTGCGGG          TTTTTTTATTCAAAC  91 63
        pheS NONE
 MF1_RS00380  102184 ..  102205 + -14.5  -4.63993   ATTATTTTATAAAGC           GGGAGCACT TTTG AGTGCTCCC            TTATTTTTTGGCATT 100 57
 MF1_RS00385 NONE
 MF1_RS00390  104148 ..  104158 +  -5.4  -3.20721   TCTCAAAGAATGGAG                 CATG TTG CATG                 ATTTCTTGGTTGCTT  55 14
 MF1_RS00395 NONE
 MF1_RS00400  106092 ..  106116 +  -4.3  -6.09196   ATTCGTTAATTAAGA          GGCTGCA TTGATTTATTC TGCAGCC          TTTTTTTATTTTGCG  93 193
 MF1_RS00405  107201 ..  107220 +  -3.6  -4.08216   GGATCACCGATGGTT            TTTTCAGG GTTA TCTGAAAG             TTTTACGGCAGGTCG  56 503
 MF1_RS00435  121768 ..  121778 +    -4  -4.04806   TCTCGTTCTAAAAAT                 TCTT CTT AAGA                 TTGTTTACTATCCAG  57 98
 MF1_RS00440  121947 ..  121959 +  -4.8   -3.8512   ATGAAAGAGAAAAAG                CAGC TTGGT GCTG                TTCTTGTGATGCGTA  59 84
 MF1_RS00455  128504 ..  128524 +  -6.2  -4.72272   GTTATAAAAAATAAA           GGCCACTGA TATT TCA-TGGCC            TTTTTGATAAAAAAA  77 34
 MF1_RS00470  130966 ..  130979 +  -2.5  -4.40804   CAGGAAGGAGCCTAT               TTTTT CTTG AAAAA                TTTTCTACAATACTC  58 447
 MF1_RS00495  136506 ..  136520 +  -5.6  -3.16437   TGAATGAGAAATTCT               GCCTTC AAG GGGGGC               TATTCAAGTTTTATC  55 226
        acnA  143219 ..  143233 +  -5.8  -2.89205   ATATGCAGTTATCAG               CAAATT TAT AATTTG               GTTTAGATTCATTTA  56 163
        rpsT  143601 ..  143624 + -16.8  -5.48163   TTTTTTAAAATTTAG          GCCAGCACCT CTAC AGGTGCTGGC           TTTTTTGCTTTCTTT 100 52
        dnaA  145996 ..  146010 +  -2.9  -3.23979   TGTTTTCAATCTAGA               GAATT CCTAT AATTC               TTGGTAAATTATAAT  45 179
 MF1_RS00540  147151 ..  147162 +  -2.2  -3.11366   GCTGATGCCCATCCG                CGTT TAGG GACG                 ATTGTTTTGCAATGC  42 19
        recF NONE
        aroQ  148804 ..  148816 +  -2.7  -3.08679   ACGATTTAATTATAA                TTGTT AAA AGCAA                TGTTGGATAAGAGCA  43 19
        cyoA  149920 ..  149942 +  -6.3  -3.61371   ATATTAATAGAAAAA           GAGCCCTTT GAAAA AGAGGGTTC           TTTAAAGTGAAATTT  64 42
        cyoB NONE
 MF1_RS00565 NONE
        cyoD  153292 ..  153303 +    -3  -3.68557   TAGTCATTAGGGGTT                TTGT CATT ACAA                 TTTGGAGTATATTTT  50 154
        gpsA  154846 ..  154867 +  -8.9  -2.68907   CAGAGAAAGTACAAA           TATACCATT CTAA AATGGTATA            TAAATTGCTTTTTCT  69 253
 MF1_RS00595  158386 ..  158399 +  -8.1  -3.14564   TCATCAGGATAGATT               CCCCA TAAC TGGGG                TTGATGAAGCCATCC  65 116
 MF1_RS00620 NONE
 MF1_RS00625  167164 ..  167174 +  -5.4  -4.10348   TTAGTTGCAATAAAG                 GAGA AAT TCTC                 TGTTTTATTATTGTT  66 164
         pgi  168980 ..  168996 +  -8.7  -2.90813   AGAGTTGCCCCTATG              CCGCATT TCG AGTGCGG              TGCTTTCAACCACTC  66 109
        rplU NONE
        rpmA  170143 ..  170164 +  -5.2  -6.19443   TTTAGCACTAGAAAG           GAAAGGCA AGATGG TGTCTTTC            TTTTTTTTTACTCTA  95 87
        ptsP  174368 ..  174387 +  -4.4  -2.85017   TAAAAATGAAGGATG            TATTTGTT ATTC AACAAGTA             TCCTATCTTCTTTTG  48 372
 MF1_RS00655  174880 ..  174893 +  -4.5  -5.20633   ATTGATGGTTTTATC               TACCC TCTT GGGTG                TTTTTATCTCTTTTT  76 331
 MF1_RS00670  181174 ..  181210 + -13.8  -4.28361   TATGGTAGCGCAATT    CCGTTCACCTCTGCCT AAATA AGGCAGAGGTGAAGAG    TTTTGATAGAATTAA 100 56
 MF1_RS00675 NONE
 MF1_RS00680  187343 ..  187379 + -13.8  -4.28361   TATGGTAGCGCAATT    CCGTTCACCTCTGCCT AAATA AGGCAGAGGTGAAGAG    TTTTGATAGAATTAA 100 56
 MF1_RS00685 NONE
 MF1_RS00690  191085 ..  191108 +  -4.6  -2.74605   TGCAGCACTTTATTC          TCTACAACGA TAGA TTGGTGTAGA           TAGCTTTTAGCAGGA  47 13
 MF1_RS00695  191809 ..  191823 +  -4.3  -3.24188   GCACCGCCACCAAAA               TAAGC AGCAA GCTTA               TTGCTCATCATATAA  51 116
 MF1_RS00710  195009 ..  195020 +    -3   -4.2461   ATTCCTCAGTGAGCA                TTTC CAAT GAAA                 TTTCTTGATCAAGCT  57 187
        obgE NONE
 MF1_RS00720 NONE
 MF1_RS00725 NONE
 MF1_RS00730  199126 ..  199144 +  -7.5  -3.69405   TTTTATAAGATTCTG             CTTCTCT TTGTT AGAGAAG             TTCCTCTTTTTTCTA  71 44
 MF1_RS00745 NONE
 MF1_RS00750 NONE
 MF1_RS00755  203380 ..  203394 +  -2.2  -3.62775   TTTTATAGATGCCTT               TTATAT TAT GTATAA               TTGTTAAAAAATAAT  47 65
 MF1_RS00760  204030 ..  204044 + -11.4  -4.98531   TTAAAAATAAAAAAG               CGGCCT TTA AGGCCG               TTTTTAATTTGAGCG 100 43
 MF1_RS00765  204631 ..  204646 +  -4.8  -2.54896   CGCTTATGCGGGTAT              GTATTT CTAA AAATAC               TACATTAGGTGAACG  49 16
 MF1_RS00770  204987 ..  205005 +  -4.5  -3.88001   CGCACAAAAATGAAA             GCCTGCT CAAAA AACAGGC             TTGATTTTTCTGAAA  57 3
 MF1_RS00805 NONE
 MF1_RS00810  217355 ..  217369 +    -5  -4.05607   GACTCCCATCAGAAG               GAGAGA TTT TTTCTC               TTCTTGTTATGCTAT  62 241
 MF1_RS00820  219589 ..  219606 +  -2.7  -4.41309   GTATGGATTTTGTTT             GCTAAAA TCAT TTTCAGC              TTTCTCTTCTTGTTT  58 192
 MF1_RS00825  221437 ..  221450 +  -2.5  -5.77734   AGATTTTATAAACCA               TAATT AAAA AATTA                TTTTTATTTTTCTTT  86 39
        guaB  223175 ..  223209 + -11.7  -3.26449   ATCTCAAGCGTAAAG     GGAAAGAATTGGA AGCTAACGA TCCAATTCTTTCC     TTAGGTTATATAAAA  87 127
 MF1_RS00835  225297 ..  225309 +  -2.7    -3.315   ACTGGTTCTCTTTTA                CAATT ATT GATTG                GTTTTCTATGAGCAT  45 137
        guaA  226889 ..  226908 +  -5.8  -3.44321   TTGAAATTAAGCAAA            GCATTTTA ACAA TAAAGTGC             TGTTTAGAATTTGAT  61 41
 MF1_RS00845  228239 ..  228250 +  -4.4  -3.91412   ACCCTATAAAATCAG                CAAC AAAT GTTG                 TTTCTGGGGTATCGT  59 492
 MF1_RS00885 NONE
        nrdI NONE
        nrdE NONE
        nrdF  239852 ..  239864 +  -4.8  -5.30686   ACGGTGTATGACCTT                CGCA TTTTT TGCG                TTTTTTATCGCTGTT  83 391
 MF1_RS00925  246199 ..  246219 +  -2.6  -2.79517   GTTTTATTCAAAAAG           C-CTAGCAG TTGT TTGCTAGAG            GTATTTATCTATAAT  42 76
        argJ NONE
        mutT  248263 ..  248280 +  -4.1  -3.73402   TAAAATTAATATGTT             GCG-CGCA ATA TGCGGTGC             TTTAATGAAAGCTCT  57 230
        hslV  253841 ..  253852 +    -3  -2.66656   ATGCAGAATTATCTT                CTTT AGAG AAAG                 CTATTTGAATGTGTA  43 6
        hslU  255503 ..  255515 +  -6.3  -3.42574   GAGGTGCTTTTTGGC                TGCTT CTA AAGCA                TTGTAGTCGGCTTCA  60 357
 MF1_RS00985  260954 ..  260973 +  -2.9  -4.69324   TAAGAGTTGAGTATA            GAATGAG AAGGGC TTCATTC             TTTATTCTTTGTTAT  63 44
 MF1_RS01115  286826 ..  286838 +  -2.6  -4.17048   CAAGCCAAGTTGAAT                GTGC CAAAA GCGC                TTATTTTACGAAGAG  55 49
        gshB  292489 ..  292508 +    -3  -2.56046   AATGTTGTTTTTTTA            TATTTGTCA TGC TG-CAAATA            TGAATTAAAATTTAG  42 88
 MF1_RS01140  293616 ..  293627 +    -3   -3.0558   CCGAGTGATGACTTT                GAAA TAAT TTTC                 TAATTTGTAATGTAG  45 19
        pstC NONE
        pstA NONE
 MF1_RS01155 NONE
        phoU  298321 ..  298334 +  -5.3  -4.56597   GTATTAAAGTGAATT               GTATG GCTT CATAC                TTTTTGAGGCAGGGG  71 353
 MF1_RS01165 NONE
 MF1_RS01170 NONE
        mutM NONE
 MF1_RS01180 NONE
 MF1_RS01185  303981 ..  304010 +  -4.5  -5.60689   ATTAATGCAATAGAA       TA-AAATGCCCATA TCT TATAGGCATTTGTA       TTTTTTGTTCTCTCG  85 80
 MF1_RS01190  305160 ..  305171 +  -4.4  -5.80364   TTCGTGTTTCCTAAT                CAAC ATCA GTTG                 TTTTTTTGTTCAGGT  91 374
 MF1_RS01195  307063 ..  307083 +    -4  -3.18264   ACTACAGATTTTTTT            GCATAGGT GTGTA ACATATGC            TTCATAAATGAAGGA  49 299
 MF1_RS01200  307961 ..  307984 +  -8.2  -4.12226   CGTCTGAATTATGAA          GAGGCTTCGTT TTT AACG-GGCCTC          TATTTTTGTGATTGT  81 60
 MF1_RS01205  309785 ..  309813 +  -6.7  -5.75342   TAAGACTAAGTTTTT        AAAAGGTTCTGCC GGC GGTGGAGCCTTTA        TTTTTTTTGAGAGAA  89 48
 MF1_RS01210 NONE
 MF1_RS01215  314063 ..  314075 +  -2.7  -3.34517   CACAATCAGGAAGTC                TTTCA CTT TGGAA                TGTTTCGCAAGCCAT  46 396
 MF1_RS01225 NONE
        rsmD  316479 ..  316490 +  -4.4  -5.26316   TCATAGTTCAGGTAT                GAGA AAAT TCTC                 TTTTTTATCCGATAG  79 35
 MF1_RS01235 NONE
 MF1_RS01240 NONE
 MF1_RS01245 NONE
 MF1_RS01250  322064 ..  322090 +  -3.1  -4.25256   TCTTCATTTTTAAAG         TGAGAAAGTTT TTGCT ATATTTTCTCA         TTCTTTTGGTGCAGA  57 359
 MF1_RS01255  323877 ..  323900 +  -3.8  -3.43042   GAGTCAGCATCGGGG          GAGATATGCT TATT AGCACACCTC           ATTTTTGGTGGAAAG  51 10
 MF1_RS01260  325132 ..  325151 +    -8  -4.87893   CTCTACGATTTTATA            TCCATTAT TGGA ATAATGGA             TTTTTGCTTCACGTT  86 244
 MF1_RS01275  328538 ..  328552 +  -7.2  -2.88249   AAGTTTGAAAATGCT               GACTTT TAT AAAGTC               TGTGTAGAAAGTATC  62 39
        lldD  331045 ..  331072 +  -8.7  -3.96188   CATGCGTCAATTAAA        TTTTCTCTATT ATTATA AATAGAGAAAA         TTTATACATATCATT  82 415
 MF1_RS01315 NONE
 MF1_RS01320 NONE
 MF1_RS01325 NONE
 MF1_RS01330  342853 ..  342863 +    -4  -5.24989   TGTAATATTATTTAT                 GTAT AAA ATAC                 TTTTTTAATATCTAA  76 465
 MF1_RS01340  345520 ..  345536 +  -8.7  -2.62616   TCGAACCACGGACAC              GCGGATT TTC AGTCCGC              TGCTCTACCAACTGA  65 158
 MF1_RS01350  347108 ..  347123 +  -3.3  -3.58533   GAATGGGCATTTCAG              GTTGA AAAAGC TCAAC               TTTAAGAAATTGTGG  50 5
 MF1_RS01355  349006 ..  349025 +  -4.4  -3.56821   TACGGCTGGGGTTTA            TC-TTCTCA GTT TGAGAAAGA            TTTAGAGGATATGGT  55 236
 MF1_RS01360  350660 ..  350679 +  -2.2  -4.19177   AGAATTTTGTACTTT            TTCAAATG CACG CATTTCAA             TTTGTCTTACACGCT  56 222
 MF1_RS01380  357291 ..  357302 +  -2.2  -4.05875   ATGATACAAAGAAGG                GGTA CAGA TGCC                 TTTGCCTTTTTTAGA  52 201
 MF1_RS01385  358134 ..  358148 +  -3.6  -3.03085   GAGCGAACAGACCGT               TCAATA GCC TGTTGA               TGGTTGTTTAGAGTG  47 55
 MF1_RS01390  359755 ..  359765 +  -4.6  -3.63922   TTACCATAACTAATG                 GTCG CTC CGGC                 TGTTTTGGCAGCACT  56 227
 MF1_RS01400  361650 ..  361660 +  -2.6   -4.8487   AAAGCGCGCTCTTCC                 TTTA TGA TAAA                 TTATTTTTTTGATAA  66 19
 MF1_RS01405 NONE
 MF1_RS01410 NONE
 MF1_RS01415  364816 ..  364830 +  -2.8  -4.98758   GTTTAGCATCTGTTT               GCTC TAATGAT GAGC               TTTTTATAAATTTTT  66 77
         zwf NONE
         pgl  367224 ..  367240 +  -2.9   -4.0371   AATTTATGAGCATTC              TCTTCCG ACA CGGGAAA              TTTATCTAGACCGTA  53 112
 MF1_RS01440  372387 ..  372397 +  -5.4  -2.53164   TCTTCAATCATATGA                 TCAG TCA CTGA                 ATTAATGGTGAATGA  51 281
 MF1_RS01445 NONE
 MF1_RS01450  374926 ..  374937 +  -2.2  -4.21936   AACGCAGGATTTATT                G-GGC AGT GCCAC                TTTTACGCTTATGAA  54 171
 MF1_RS01455  376754 ..  376768 +  -5.8  -2.54723   GACAACAGATAAAAG               CATTTT TGA AAAATG               ATATTCATGTTGAGG  54 10
 MF1_RS01465 NONE
        grxC  379124 ..  379134 +    -4  -4.93296   TTTTAAGTTCCTGAG                 GTTT TAG AAAC                 TTTTTATAGTCATGG  71 191
 MF1_RS01480  381425 ..  381441 +  -3.7  -4.00411   TTTTCTATTGATGTG              TTGCTTG TCT CAAGTGA              TTGTTTAGAATTTTA  57 277
 MF1_RS01495  387667 ..  387681 +  -4.3  -5.54894   GGAAATTGAGTCATG               CCTTT TTGTT AAAGG               TTTTTTTAATGAATT  82 232
 MF1_RS01500 NONE
         der  390348 ..  390361 +  -2.5  -3.32695   CAATAAAAGAAAAAA               TTATT TTAT AATAA                GTTTATTTATAAAGA  45 164
 MF1_RS01510 NONE
 MF1_RS01515 NONE
 MF1_RS01520  392420 ..  392456 +  -5.8  -4.46656   TAATCATTTTTGAAA    GGGTATGCCTGCTTTC TTTAT GAGGGCGGGGATGCTC    TTTTGGTGTTGTAAC  74 38
 MF1_RS01525 NONE
 MF1_RS01530  393737 ..  393749 +  -4.9  -2.66218   AATTTTTGTATTTAA                TGAAT TCT ATTCA                GCTTTTTGCTCAATG  50 143
 MF1_RS01555 NONE
 MF1_RS01560  402571 ..  402593 +  -2.1  -4.49838   ACGAATGATGGCATC          GAGTT-TGAT TTGT ATCATAGCTC           TTTATATTTATTGTT  59 126
 MF1_RS01565  403829 ..  403840 +    -3  -5.07652   TACCCATCGTTTTAT                TGAA GATG TTCA                 TTTTATTTTAAAACG  71 219
 MF1_RS01575 NONE
 MF1_RS01580  406304 ..  406322 +  -3.8  -3.98256   TATTATAGATTTTTT             TTCCGAGT GTT GCTCGTAA             TATTTTTGATAAAGA  57 113
 MF1_RS01590  407695 ..  407723 +    -9  -5.27335   CGTTTGTGAATATAA       CAGCCGCTATCAT ATCT ATGATGGC-GCTG        TTTTTGTTTCAGAAA  95 55
 MF1_RS01600  410499 ..  410509 +  -6.8  -3.07344   TTGTTTTGGTTTGCT                 GCTC AAT GAGC                 TCTGTTGCAAAATAA  59 76
 MF1_RS01640  419970 ..  419990 +  -5.5  -5.47218   CCGTTTGTTTTCAGA            GTGGTTTTT ATA AAAAAGCAC            TTTTTTTGAATCAAG  84 146
 MF1_RS01650  420738 ..  420755 +  -2.7  -5.68023   AGGGAATGCTTAAAT             CGTTAAG TTTG TTTAGCG              TTTTTTTCCTTATAG  80 28
 MF1_RS01665  424118 ..  424133 +  -2.6  -3.65782   GTGTTTTGTGTTCAA              CATGAT AATT ATTATG               TTCTCTCCTTTGATG  50 495
        greA NONE
 MF1_RS01690  430945 ..  430964 +  -2.2  -3.32803   CTAAGTAAATACAAA            TGTTATTT TACA AAATTACA             TGTCTTTGATGTGAT  44 120
        trxB NONE
 MF1_RS01705  435817 ..  435834 +  -5.5  -6.60239   GGTTTTCCAAACTTG             CCGGATG TACG TGTCCGG              TTTTTTTTTATTTTT 100 212
 MF1_RS01725  444946 ..  444968 +  -7.6   -5.1286   TTTAACAGGGTGGTT           GGCACCATGG TGT CCTTGGTGCA           TTTTTATGGTTTTTG  86 459
 MF1_RS01755  454951 ..  454961 +  -5.4  -3.17146   TGTAAAAGTATCTTT                 TCTC ATA GAGA                 TCTCTTCTAAGAGGA  55 264
        rpoD  457496 ..  457514 +  -4.6  -3.90744   TGGATTATTGTTTTG             TTAGATTC TGT GTATCTAA             TTCTTTAAGCCAGAG  59 444
 MF1_RS01775  460250 ..  460271 +  -2.9   -4.3902   AATTCCTTTGCAAGT           TTTCTCGCC TTTT GGCTAGCAA            TTTGATTTTTGTAAT  58 143
 MF1_RS01780  462795 ..  462812 +  -2.6  -4.67256   CATAAGTTTATCCAC             AGAGGG TCTCTT CCCTCC              TTTTATCATTTGTTG  65 120
 MF1_RS01790  464651 ..  464663 +    -2  -3.21593   GTGAGGCTATGGTTT                TTGA TATGT TCAA                TCTTATCGAAAGGTA  44 167
 MF1_RS01805  470260 ..  470277 +  -4.9  -2.92653   GAGGATAAGCTGTGC             TTTCTCA ACTT TGAGAGA              TGTGTGAAATTCTGC  51 379
        ettA  473318 ..  473333 +  -5.4  -3.55181   GGCAGTAACAAAATA              GATGCA AGTA TGCGTC               TTCTGCTTGACTTTC  59 386
 MF1_RS01830  476461 ..  476473 +  -2.6  -5.99154   GAAAGCATGCAGAAA                GGGT ATGGC GCCC                TTTTTTTATTTGGTA  91 111
 MF1_RS01835  477823 ..  477840 +  -4.1  -5.16237   CATTGAAATAAAATA             CACCTTG AAAG CAAAGTG              TTTTTTGATCAGGTT  76 30
        rnpB  478528 ..  478542 +  -5.7  -3.22448   TGAAGTTTCCTATCC               TGGCA TCAGT TGCCA               TTGATAGCTATTGAT  55 248
        rsmH NONE
 MF1_RS01850  479996 ..  480006 +    -4  -5.63645   CAAAAAGGCGTGCGA                 TGAT GAA ATCA                 TTTTTTCTCTTTTCC  84 23
 MF1_RS01855 NONE
 MF1_RS01860 NONE
        murF  484609 ..  484622 +  -3.1  -2.77109   GACTGCACTGCTTGA               TCACT ATAA AGTGG                CTTCTCTATAACTTT  43 1
 MF1_RS01870  485725 ..  485738 +  -3.9  -3.43961   CACTTAAATTGCGGT               GAAAT TTTG ATTTC                TTGTACGTGTTATAA  51 24
 MF1_RS01875  487133 ..  487143 +  -2.6  -4.39002   TAAAAGAATCATAAA                 TTTT TTA AAAA                 TGTTTTTTGTTAATA  58 27
 MF1_RS01880 NONE
 MF1_RS01885 NONE
 MF1_RS01890 NONE
        murB  492017 ..  492034 +  -5.6  -3.44325   AAAGAATCTCTTGCG             TCAGAC GTCTGA GTCTGA              TTCATTATGCAAAAT  57 140
 MF1_RS01900  493055 ..  493069 +  -3.5  -3.20348   GTGGATGGTGGAGGA               CGCGT CGTGT ATGCG               TTGAATGTTGATAAA  47 7
 MF1_RS01905 NONE
        ftsA  495298 ..  495317 +    -5  -3.21276   AGTAAAGTTAATTTT            CATCGC TTTGGCTT GCGATG             TCTTATGAGAAGGAA  54 56
        ftsZ  497219 ..  497246 + -15.8   -2.7297   ATGCTCTGTTTTTTA        TAAACCCGCTTA TTAC TAAGCGGGTTTA         CTATTTGCTATTGAT 100 136
 MF1_RS01920  498268 ..  498288 +  -6.2  -4.09243   GGATGATTGACCTAA            GCTACTAA ATTGG TTAGTGGC            TTTTAAAGCGATATG  69 96
 MF1_RS01925 NONE
        recN  501026 ..  501044 +    -6  -3.63266   AAAGAGTTGAAATTC             TTATGGCC ATA GACCATAA             TTTGAAATAGATTTT  62 122
        ligA  503635 ..  503647 +  -3.4  -3.25102   AGTTTTTTAGAGAGT                TCCA TTTTC TGGA                TATTGTAAGTGCACT  47 440
 MF1_RS01980  512282 ..  512297 +    -9  -5.01811   AATAATGATAAAAAA              GCCCAA GTAA TTGGGC               TTTTTCGTTTCATGG  95 67
 MF1_RS01995 NONE
 MF1_RS02000 NONE
        hflK NONE
 MF1_RS02010  519935 ..  519953 +  -2.4  -4.19817   TATGATGAAAGTCAG             TCAATGTG AGC CATACTGA             TTTTGCATAGATGAA  54 118
 MF1_RS02015  521930 ..  521958 + -11.9  -3.62875   ATTAAATGATGAGAG        CCAAAAGAAATGC TTT GAATTTCTTTTGG        TATTATTGTTGTGTT  91 427
        miaA  523219 ..  523234 + -10.4  -5.55769   TTTTCGTGTGTAATA              GGCTCC TGGA GGAGCC               TTTTTTATTGTGCCG 100 196
 MF1_RS02030  526610 ..  526621 +  -2.2  -5.82281   GTCTGGGCTTATGCT                GAGG AATG TCTC                 TTTTTTTCTGTCTTT  83 58
 MF1_RS02035  527666 ..  527686 +  -4.8   -4.8048   TTATTGAGAAAATTG            TATCTCTT TATTT AAGAGATG            TTTTTAATGTGAAAG  72 291
        ilvC  530105 ..  530145 + -14.4   -5.4251   GTAAAACTATAGGTT CATGTACAAAAAGGGTAAC TTTG GTTACCCTTTTTG-ATATG  TTTTTTATGTATAGG 100 60
 MF1_RS02050  533557 ..  533573 +  -7.3  -2.62616   TCGAACCCACGACCC              GCTGATT AAG AGTCAGC              TGCTCTACCGACTGA  59 49
 MF1_RS02060  535883 ..  535914 +  -4.7  -4.13561   AATGGCTATTAATCT      CAGAAATAGTG-AT TACAT ATGCATTATTTCTG      TATTTTTTAAAGACG  64 284
 MF1_RS02085  544677 ..  544692 +  -2.6  -3.13743   TTGTTGAAGAAGGGA              TTTTGG AATG CTAAAA               TATGTTCACGTTTTT  43 12
 MF1_RS02090  544972 ..  544988 +  -5.3  -4.07568   AATGGTTTCAGATTT              TTTTTAT GAG ATAAAAA              TTTTGCAGAACGAAA  63 41
 MF1_RS02095  546940 ..  546971 + -11.8  -5.86976   CAAAATTAAATTAGC      GTAAGAGGTCCTATC CTT GATAGGACCT-TTGC      TTTTTTATTTTGTAC 100 47
 MF1_RS02115  549806 ..  549816 +    -4  -3.70773   TGAAAAATAGTGCGG                 TTAG AAT CTAA                 TTGTTGACTGTCGCG  52 122
 MF1_RS02120 NONE
 MF1_RS02125  552159 ..  552169 +    -4  -3.83566   TTTTGCATACACTAA                 GAAT ATG ATTC                 TGTTTGTTGTTGCGT  55 228
 MF1_RS02130  552760 ..  552776 +  -3.8  -4.04916   AGATCGTTAAGGCAA              TTAAGA AGTCA TCTTAA              CTTTTTGTTTTTTAT  57 9
 MF1_RS02135  555644 ..  555675 +    -3  -5.53991   AAATATCTATTGCTT      TAGAGCGGTTGG GGTAATTG CCGACCATTCTA       TTTTTTTCATGGATA  77 9
 MF1_RS02165 NONE
        rpsG NONE
        fusA  564841 ..  564851 +  -2.6  -2.58252   TTTTAGATTACATAA                 TTAA TTT TTAA                 CTTAGTCCTTGGTTT  41 41
         tuf  566082 ..  566103 +  -7.3  -3.64703   AATGGTTGTTGAAGA           GTGCCTTTG TTGT TAAAGGCGC            TTTGCATAACAGGGA  68 43
        rpsJ NONE
        rplC NONE
        rplD  567802 ..  567814 +  -5.5  -3.10597   AAAGCAGCTGTCGAG                GCTCT TGA GGAGC                GTTTTAAATGAAAGA  54 2
 MF1_RS02200 NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ  571339 ..  571354 +    -4  -3.23708   TTCGTTAATAGATTT              TAAGGC AATA GCTTTA               TCGTTTTTGGCAGGC  49 83
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN NONE
        rpsH NONE
        rplF NONE
        rplR NONE
        rpsE NONE
        rpmD NONE
 MF1_RS02285  575823 ..  575833 +    -4  -3.40689   GCAATTTATTATGTA                 TGAT AGT ATCA                 ATTTTTAGAGTTATA  51 101
        secY NONE
 MF1_RS02295  577924 ..  577950 +  -3.1  -3.44622   CCGGATCAGTTTTTT         CTATAAGGTAC ATCAG GTATTTTATGG         TTAATTATCAACATA  48 148
        rpsM  578348 ..  578372 +  -9.5  -5.52909   GCCGGTAAGAAAAAA          TAATAGTCTTT AAA AAAGACTGTTA          TTTTTTTAGATATTC 100 23
        rpsK  578884 ..  578899 +  -5.4  -3.09492   TGTTGTTTTTCATTG              TCGGAG GCTT CTCTGA               TGTTCACATTGGCCG  54 46
 MF1_RS02310 NONE
        rplQ  580455 ..  580471 +  -8.7  -6.02914   TTGGATTTTTGAAGG              CCGTCTT TCC AGGACGG              TTTTTTTTATGTGCA 100 54
 MF1_RS02320 NONE
 MF1_RS02325  583446 ..  583473 +  -6.4  -3.44051   CAGTCTTTTTTATGT        CCCTA-AACTGAT TAC ATCCGTTATAGGG        TTGTAATCCTAACGA  62 55
        recA  585103 ..  585113 +    -4  -4.35561   GTAATTCCTTCATTT                 GAAA TTT TTTC                 TGTTTTTATTTGTTA  62 59
        alaS  588427 ..  588438 +  -4.4  -3.39895   CTTCTGTTTCGACAT                CAAG AGCA CTTG                 TTGCTTCATCCAGAA  52 506
 MF1_RS02345  591597 ..  591631 +  -8.1  -4.23207   TGTAAGACTTCTCTC     TGGTAATGTTTGTTT TTTAC AAAGAAACGTTACCA     TTTCTCTGCTTTTTA  81 493
 MF1_RS02350  592551 ..  592567 +    -3  -4.59853   CGCTCCTTTTCCAAA              TCACAG TATTT TTGTGA              TTTTTCGAGGATTAA  62 69
         ssb  599227 ..  599246 +  -2.2  -3.57651   AATAAATAACATATT            GAAAATTA TTAT TAAATTTC             TTCTCTGATGTAGGG  47 152
        gyrA NONE
        coaD NONE
 MF1_RS02390 NONE
 MF1_RS02395  603866 ..  603876 +  -5.4   -3.5882   CGTTGCGATTTTTAT                 CTCT GTA AGAG                 TTTCCGACTGCTCTA  59 125
        glpX  615005 ..  615044 +    -8  -3.57387   TTTTTTTCAAAAGGA  CGCTTCCATAAAAGGGTT TAAG AATGCGTTTATGGAAGTG   TTTGGAGGATATATT  73 84
 MF1_RS02440  616902 ..  616926 + -11.5  -4.33281   TAGCAAAACAAACAG          TGCGAGGGTTT TTA AAACCGTCGCA          TTATTTGTTTAGCGT 100 108
 MF1_RS02460 NONE
 MF1_RS02465 NONE
 MF1_RS02470 NONE
        glmU  626364 ..  626381 +  -3.5  -3.64103   GGAATCTCTGATTGT             TTTATGG GATT CTATAAA              TTTGGGATGTCAGTC  50 158
        glmS  628290 ..  628302 +  -3.5  -4.21402   ATACAACAAATGAAT                TTATT AAG AATAA                TTTATCGTTTTCCGT  57 84
        dnaE  635025 ..  635040 +  -7.6  -3.26486   TTTCATACATGAAAG              CCCAAA GCAA TTTGGG               ATTTTAAATTTTATA  67 435
 MF1_RS02505 NONE
         ppx  640762 ..  640778 +  -5.2  -2.84262   AGGGCAATATTATTA              TAGAGA CTTTT TCTCTA              GTTCTCTCTTCTATA  52 217
        aspS  644519 ..  644543 +  -8.9  -5.09221   ATGTATAATTTATGA          TTATAATATTT ATT AAATATTATAA          TTTATTTTTATTATA  95 306
        parC  647710 ..  647724 +  -3.6  -2.94099   TGGGCTTATCCTTGT               TCTGTA AGC TATAGA               TCTGTGCTGCAGAGG  46 501
 MF1_RS02580  658270 ..  658285 +  -3.2  -4.85599   AATATATAGACCCCA              CATCCA TATA TGGAGG               TTTTTATGGAATGAA  68 286
        dksA  658751 ..  658767 +  -2.4  -5.00616   TGAAATGCTTAACGC              TAAAAT TGGGT ATTTTA              TTTTTTGGGAACAGG  65 64
 MF1_RS02595  662346 ..  662358 +  -4.1  -3.58329   GGGCTTTGGGATAGA                GTTGA TTT TCAGC                TTTAAGGACTCTTTG  52 322
 MF1_RS02610 NONE
 MF1_RS02615  666033 ..  666049 +  -4.5  -4.65895   TTCAATAAAAATTGT              TTTTAGC ATC GTTAAAA              TTTTTCAATAGGAAG  70 33
 MF1_RS02620 NONE
 MF1_RS02625  667312 ..  667341 +  -5.1   -3.7398   TCGCAGTGATAGGCA       GCAATCTTGGACTC ATT GAGT-TAAGAATGC       TATTTTGAATTGAGA  59 7
 MF1_RS02630  667432 ..  667445 +  -2.3  -3.40597   CACAGGTTCGAATCC               TGTCG GGAT CGCCA                TGTTTAAGTAGGAGA  45 12
 MF1_RS02635  667945 ..  667956 +  -5.8  -2.69912   GGTTGTTTTGTTCAA                GAGG CACA CCTC                 TCCCTTCCTTTTTTC  55 107
 MF1_RS02640 NONE
 MF1_RS02650  671176 ..  671189 +  -2.3  -3.85859   TTTATGCCGGTAAAG               CTACG CTTT CGGAG                TTCTGTTTAAATCTT  50 491
 MF1_RS02655  673277 ..  673293 +  -4.3  -3.88029   TGCGCTAAGAGAATA              GCCCGAT AAA GTAGGGC              TCTTTTCTCTGAGAT  57 45
        gatB  674981 ..  674993 +  -2.7  -2.92038   ATGGTTGAGTTTATC                GGTAA TTT TTATC                TCTAGTAATTTTAAG  42 119
 MF1_RS02665 NONE
 MF1_RS02670  676342 ..  676357 +  -3.3  -4.12456   AATCTCAATTTTAAT              TTGCT TAGTAC AGCAA               TTTTGGGGATGGTGT  57 390
 MF1_RS02675  677599 ..  677609 +  -2.4  -3.53012   ATTATCTCCAAAGCT                 CCCG ACG CGGC                 TTTAGCAAGAACGCC  47 319
 MF1_RS02685 NONE
 MF1_RS02690 NONE
 MF1_RS02695  678515 ..  678525 +  -6.8   -4.2704   TCGATTCCCGCTACC                 CGCT CCA AGCG                 TTTATTGATGCTAGA  71 18
         tuf NONE
 MF1_RS02705  680010 ..  680030 +  -3.9  -4.45544   TTCAAGCCCTGCTGC            CCCTGCCAG AGA TTAGTAGGG            TTTTCGTTGGTGAGG  62 18
        secE NONE
        nusG NONE
        rplK NONE
        rplA  682243 ..  682269 +  -6.6  -3.79451   GTTGATCCTGCGACC         GTTTGTTCAGAG TAG CTATGAGCAGAC         TTGTAATTTTATTTT  66 11
        rplJ  683168 ..  683190 +  -2.1  -4.37763   GTGTTCATGTTGATA          GAAGAGCTAT GATG AT-GCTTTTC           TGTTTTTTTAAATAA  57 50
        rplL  683632 ..  683655 +  -9.6  -5.06472   AGTAATTTAATTTTA          TCGGTGGGCA TTTA TGTTCACCGA           TTTTCTTCTTTCTCT 100 36
        rpoB  688077 ..  688100 +  -6.7  -3.00003   GAACAATAATTTAAC          GAGCGCAGT GGAAAG AGTGCGCTC           TGATTGTTCTGATAG  59 32
        rpoC  692485 ..  692507 +  -8.5  -5.85178   GCAGCGATATAAAAG           CGCCTGAAT AGAGA ATTCAGGTG           TTTTTTTTAGATCTT 100 56
 MF1_RS02755  694426 ..  694446 +  -4.1   -4.7261   TTCATTTTTATTGAA            TTTTAACAT TGC ATGTTAATA            TTTATTTTACTACGT  70 110
 MF1_RS02760  696156 ..  696170 +  -2.8   -4.2074   ATTGATAAAAGAGTT               GCACTT TAA AATTGC               TTTGTGTGTTGAAAA  55 87
        clpS NONE
        clpA  701426 ..  701436 +  -3.2  -5.01732   ACTGTTACACCATCT                 GCTT GAA AGGC                 TTTTTTGACGGCATT  72 208
 MF1_RS02795  703347 ..  703360 +  -6.7  -5.40072   AGATGTCCGCCGGTA               GTAGG TTCT CCTAC                TTTTTTTCGCGGAGG  87 135
        rpsB  704224 ..  704251 +  -4.9  -3.57561   AAGGAGAGGTTATGG        GCGTGCACAGGA TTTTC TTCT-TGCGCGC        TTTCCCCCATTACAG  57 79
 MF1_RS02805  705291 ..  705316 +  -7.5  -3.24747   ATGTGATTATTAAGA         GGGCGTCACAT AATA AAGTGGTGCCC          TTAGTGGTGTCGAAA  67 111
 MF1_RS02810 NONE
         frr  706953 ..  706967 +  -2.1  -3.66803   TCGCATGATAAAGTA               CTTTC TTATT GAAGG               TTTCGAATATTCCAC  47 295
 MF1_RS02820 NONE
        rseP NONE
        bamA  711992 ..  712010 +  -3.2  -4.08216   AAATTCTGATTTGAA             TTTTCTTT AGA AGGGAAAA             TTTTAAAGAGAATGG  55 32
        lpxD NONE
        fabZ NONE
        lpxA NONE
        lpxI NONE
        lpxB  716778 ..  716790 +  -6.3  -3.28712   GTGCACGTGCAATTG                CAACA CAC TGTTG                TTGTCCACCAGAGAG  60 334
 MF1_RS02890  726696 ..  726707 +    -3   -5.1356   TTGTATAACTTCTCG                CATT CTCC AATG                 TTTTTCTTGGTACAG  71 47
        rpiA NONE
 MF1_RS02900  728558 ..  728574 +    -8  -4.72986   GTTTGTTTTTGAAAG              TGGCAG TTTTT CTGCCA              TTTTTAATAAAAGTA  86 78
         gor NONE
 MF1_RS02910 NONE
 MF1_RS02915  733347 ..  733359 +  -3.5  -2.80091   AAAAATTGAGCATTA                TTTTA TGA TAAAA                GTTCGTTTTGCACCT  44 32
 MF1_RS02920  735123 ..  735145 +  -7.8  -4.14511   ATATACTTTTGATCA           GCTTTTGTGA CGA TCGTAAAAGC           TTTTCCGCTCCGATT  77 418
 MF1_RS02935  737736 ..  737746 +    -4  -5.56573   GGAATTCAGAAATTT                 TGTT TTC AACA                 TTTTTGTTTCTTTCT  79 295
        hutH  739433 ..  739443 +    -4  -4.14243   CCACGCTTAGAACCC                 CAAT AAT ATTG                 TTTTGAGATCAAGTA  59 20
 MF1_RS02945  740635 ..  740648 +  -5.3  -4.87037   AGAGTATCTGAAGGG               CCATT GTTC AATGG                TTTTTAATATATCTT  77 416
 MF1_RS02950  743407 ..  743422 +  -3.4  -4.88485   TAGAATAAAATATAT              TAATTT TATT AAATTA               TTATTTTTTTGATTC  68 495
 MF1_RS02955  749729 ..  749747 +  -2.4  -4.00684   TACAAAACATCCACT             TTAACTGG TAG CGGGTTAA             TTGTTCGTTTTATAT  52 380
 MF1_RS02960  752545 ..  752556 +  -4.4   -2.6933   TCCTGAAAATGAAAA                CTGA GAAT TCAG                 AGTTTTTCTAGCCGA  47 159
        recJ  755913 ..  755926 +  -2.4  -4.60041   ATATCAATAGAAACG               CGTA GCAGTG TACG                TTTTTGAGGATGCAT  61 176
 MF1_RS03000  761154 ..  761166 +  -2.7  -3.65224   TAAAGGATATGAGCC                TAGAT CTC ATCTG                TTCTTAACATGCGAT  48 331
 MF1_RS03015  763166 ..  763180 +  -2.9  -3.50447   TAAATTGGGTGTGTT               GATAA CGTTT TTATC               TTCTGTAGAGATTGG  47 487
        dusA  769731 ..  769757 +  -4.5  -3.56811   ATCAATAAAAAAAGT         TTCTTAGCGTA CAAAT TTCGTTAAGAA         TGTTTAATGTGTTTA  55 373
 MF1_RS03095  780313 ..  780326 +  -4.5  -4.44667   ATCCAAGTGATAAAC               CTGCA ATAA TGCGG                TTTCTTCTTGGAAAA  66 488
 MF1_RS03120  785624 ..  785641 +  -3.5  -4.35874   TTAAATGTTCTTTAT             CCTTCCAT ATA AT-GAAGG             TTTTGAATTCTATTG  60 14
        gatC NONE
        gatA NONE
 MF1_RS03165 NONE
 MF1_RS03170 NONE
 MF1_RS03175  796155 ..  796168 +  -2.3  -6.07969   ATTATTAAAAATTTA               CGGTT TTCC ACCCG                TTTTTTTTACTTTTG  87 433
 MF1_RS03180  796717 ..  796729 +  -4.8  -3.80595   AACAGTAATTCCTAA                CGCA TTTGC TGCG                TCTTTTAATCTATGT  61 149
 MF1_RS03200 NONE
 MF1_RS03205  800972 ..  800991 +  -3.6  -3.25093   ATAAAGCTATTTCAG            CTTTTTCT TTTG AGAAAGGG             TATTAATTGACGTGT  49 46
        rpsD  801988 ..  802018 +    -7  -3.49086   TATTATCTCTGCTAC       TCTTGCAGAATGAG CTT TTTATTGTGCAAGA       TTATGGTAATTGTAT  66 263
 MF1_RS03230  806094 ..  806129 +  -4.9  -2.99162   CACTGCATTACATGA    CTCATGAAACAAAGT GCCAAA ACTTTCTTTGATGAG     CTTATTTCCACTTTT  52 309
 MF1_RS03235  807941 ..  807952 +  -2.2  -3.65351   CATTTTTTAATAATG                TTCG TTTG CGGA                 TTTCGATAGGCCTGC  47 125
 MF1_RS03240 NONE
 MF1_RS03245 NONE
 MF1_RS03250  811241 ..  811252 +    -3  -3.13392   CCGTGACAATCTGAT                TAAC AGGC GTTA                 TGTCATTTATCTTTT  45 35
 MF1_RS03255 NONE
 MF1_RS03260 NONE
 MF1_RS03265  814415 ..  814429 +  -7.2  -4.44915   CCTATCAAGGACTTA               CTTTTG AAA CAAAAG               TTTTGTAAATAATTA  78 3
 MF1_RS03280  818330 ..  818341 +  -4.4  -3.51778   AAAAAAATGGCAAAT                TCTG TTTT CAGA                 TCTTTACTATACTCC  53 241
 MF1_RS03285 NONE
 MF1_RS03290  819670 ..  819680 +  -5.4  -2.53125   TGATTATCTGAAAAA                 CTAC TCT GTAG                 CATTTTGTGGAACAT  51 282
 MF1_RS03325  827434 ..  827446 +  -4.9  -2.60723   TCTCATTCCTTCATC                TGAAA TAC TTTCA                CTTACTTAAAAATGC  50 4
 MF1_RS03330  829157 ..  829179 +  -2.8   -3.8512   TATCCCTTAGAGAGT           TGAAGCAT TATTTCT ATGCTTTA           TTCTTGTGCTCAATG  51 179
 MF1_RS03335  829970 ..  829988 +  -2.4  -4.09243   CAAGTTGCCATTCAG             TACCGATT GTG GATCAGTA             TTTTCAACGCCTGTG  53 267
 MF1_RS03355  838309 ..  838330 +  -8.7  -3.64703   TTAAGTATAAAAAAA           CCGCCACAA ATAT TTATGGCGG            TTTAAATAGAAAAAC  77 37
 MF1_RS03480  866602 ..  866616 +    -5  -3.35327   TTGAGTGGTGCTAAG               TTCTCT TGG GGAGAA               TTATAGAACTTTAAT  55 181
 MF1_RS03490  868404 ..  868421 +  -2.1  -3.01712   AAACACTGCATCTGA             GATT-GAA GCA TTCTAATC             TCTTGAAACAAAAGG  42 492
 MF1_RS03515 NONE
        yidD NONE
        thrS  874416 ..  874428 +  -3.3  -4.50976   CTTTCTCTTTTAAAA                GGCGT TGC ACACC                TTTTATCGTATAACC  64 352
 MF1_RS03555  879228 ..  879258 +  -9.1  -3.56486   TGCAGCCAGTCTTGC       TGCTCCGCGTTTA TTGGC TAAACGTGGAGAA       TATTTGCCTTTTATA  74 510
        argC NONE
 MF1_RS03615  894731 ..  894752 + -10.3  -5.61881   TAGCTAATAAAAAAA           GTGGAAAAA GATT TTTTTCCAC            TTTTTCTTTTTCCAG 100 38
 MF1_RS03620  898113 ..  898133 +  -2.7  -3.29461   TATTCTAGATTAAGT            TTTTTTTTA AGA TAAAAGAAG            TTATACAGAACATTG  45 149
 MF1_RS03625 NONE
 MF1_RS03630 NONE
 MF1_RS03635 NONE
 MF1_RS03640 NONE
 MF1_RS03645  902972 ..  902987 +  -3.2  -3.35344   TGGTTACACAGACGT              TGGGAT AGCT AACCCA               TTCATCTCGTTTGCA  48 14
 MF1_RS03660  905168 ..  905187 + -13.6  -2.82317   AATAGAACATAAAAA            CGCGAGAC CTTT GTCTCGCG             TCACTTTATTCTTTA  89 208
 MF1_RS03670  907400 ..  907412 +  -4.1  -3.82205   TCACCCAAATCAAAA                TAGAG AAG CTCTG                TTCTTAATCTCTTAC  57 518
 MF1_RS03675  908343 ..  908359 +    -3  -3.16191   GTTTCCAATTCTATG              TGGTGT ATGCA ATACCA              TTAATGGGCGTGTAG  47 101
 MF1_RS03680  908508 ..  908521 +  -4.5  -3.36166   GGATTTTCGAACGTA               GTCCT AAAA AGGGC                GTTCTTTTTTGCCAA  53 94
 MF1_RS03705  913924 ..  913940 +  -2.9  -3.16668   ACTTATTTCATATAA              GAGGTTG CCT TACCCTC              TTCCTCGAGATGTTG  45 501
 MF1_RS03725  915448 ..  915458 +  -5.4  -3.05819   TTTTGTTGATATGTA                 TGCA TTA TGCA                 TATTAAACATGTCTC  54 217
        rirA  930192 ..  930206 +  -7.2   -3.0263   AAGACAACACGAAGG               GAAATG AAA CATTTC               TATTGCAGCGATAAT  63 63
 MF1_RS03785 NONE
 MF1_RS03790  932134 ..  932144 +    -4  -3.28712   CATTACATGCATTGG                 CATT CTC AATG                 TTATAAAAGGCCCAA  50 279
 MF1_RS03860  947656 ..  947668 +  -7.7  -3.14839   TAAAAAATATTGTTG                GTCCA AGC TGGAC                TATTAAGTGTCTATC  66 282
 MF1_RS03915  958857 ..  958872 +  -3.2  -4.33739   GGCGAATTTGTAAAA              CTGTTC TGTG GAACTG               TTTTCGGATTTTTTC  60 282
        uvrC  961093 ..  961106 +  -3.9  -3.86397   AATTGAAAATGGTTC               TATGA AAAA TCATA                CTTTTTCTTTTCCAA  55 99
        pgsA  961741 ..  961759 +  -8.2  -3.00747   AAAATCCCTAAACAG             CCTAAACA GTA TGTTTGGG             AATTTTTTTGCTTTT  68 91
 MF1_RS03940  967483 ..  967504 +  -8.7  -4.19735   AAAATAAAATGAATG           CTGGTGGCA TAAA TGCTGCCAG            TTTCATTTTCAAAGA  82 54
        lptF NONE
        lptG NONE
 MF1_RS03965  973448 ..  973466 +  -2.5  -3.40175   GATGTAACTTATCAT             TGTTTTT ATGAA AAAAACG             TATATTTTAAGCAAT  47 58
 MF1_RS03970 NONE
        pdxA NONE
        rsmA  976716 ..  976728 +  -7.7  -4.19704   CGACCAGCACTTAAA                GCGTT TTC AACGC                TTTTACGTAAAGTTC  77 432
        rpsF NONE
        rpsR  983564 ..  983588 + -12.1  -4.51378   TATCAGATGCACTTT          GCAGCTGGGGA TTT TCTCCAGCCGC          TTTTCTCATATGGGT 100 41
 MF1_RS04030 NONE
        rplI  985344 ..  985376 + -18.1  -3.28791   TTTAATATGATGCCA      TAAAATACTCAGCTT TTG AAGCTGAGTATTTTA      TTATAACCACAACCT 100 81
 MF1_RS04040 NONE
        radA NONE
 MF1_RS04050 NONE
 MF1_RS04055 NONE
 MF1_RS04060  992334 ..  992346 +  -4.1  -2.96711   ATAAAATAACTGCCC                TGCCA TTT TGGTA                TATCTACGTTATCCA  47 486
 MF1_RS04090  998822 ..  998851 +  -3.1  -2.52946   TCCTCAAAATGCTTT       TAGTTATGTATGAT AAA ATCAT-CATAAATA       CCTTTTGTACGCACA  42 170
 MF1_RS04100 NONE
 MF1_RS04105 1001846 .. 1001867 +  -8.9  -2.84192   ACCCCATAATCCCAT           TCCTTTTAT GTAT ATAAAAGGA            TATCATAATACTCTA  69 94
 MF1_RS04165 1014251 .. 1014265 +  -4.2  -5.84381   CCGCAATTATTTTTC               GGACTG GTG CATTCC               TTTTTTTGTTCATGG  88 522
 MF1_RS04180 1017837 .. 1017855 +  -4.6  -5.89947   CTTTTGTACGACTGG             TACGTTGT CCT ACAACATA             TTTTTTTTGCCTTTC 100 343
 MF1_RS04190 1020996 .. 1021030 +   -11   -3.9377   AACCTTACTTGGTAG     TGAGTTGAATCATTTT TTG AAAATCGTTCAACTCA     TTTCCTTGGAATTGT  93 191
 MF1_RS04195 NONE
 MF1_RS04200 NONE
 MF1_RS04205 NONE
 MF1_RS04210 1025023 .. 1025036 +  -3.9  -3.61268   ACATGCAGATATACT               CAAAA GTCG TTTTG                TTTAAAAATTAACTC  52 107
        thiC NONE
 MF1_RS04220 NONE
        thiS NONE
 MF1_RS04230 NONE
 MF1_RS04235 NONE
 MF1_RS04240 1031355 .. 1031366 +    -3  -4.37658   TTATTTTAAAATAGC                GAAA ACCT TTTC                 TTTTCTCAAGAAATT  60 270
 MF1_RS04245 NONE
        pepN 1035655 .. 1035672 +  -2.8   -2.6039   AAAATGTTTTTAAAT             CAATAT ATTATA ATATTG              CTTATGAAATAATAT  41 46
 MF1_RS04255 1038263 .. 1038284 +  -5.9  -3.49321   TTTTAAATGTTCTCA           TTTTGCTCC CGTT GTAGCAAAA            TCTGTTTTCGTTCGT  61 46
 MF1_RS04325 1057102 .. 1057112 +    -4  -2.69609   ACATTTTAAATCCGA                 GATA TTC TATC                 ATGTTTCCTCATATT  45 32
 MF1_RS04330 NONE
 MF1_RS04335 NONE
 MF1_RS04340 1060051 .. 1060067 +  -3.8  -4.90296   AAGTAATAAAAAAAT              GATTAT TTCTT ATAATC              TTTTTATAGAATTTT  70 434
 MF1_RS04355 1062186 .. 1062212 +  -5.8  -3.66908   AGAGACATTAAAACT         GTAGTGAGACCA AAT TGGTGTCACAGC         TTCCTTTTAGAGCAG  62 73
 MF1_RS04365 1064185 .. 1064213 +    -9  -3.53012   TATGTTATATTTAAA        GGCTCCATAATT CATAA AATTATAGAGCC        TTTCAAAAAGAAAAG  77 68
 MF1_RS04375 1067717 .. 1067729 +  -2.7  -4.28589   TTTTTAGCAGGCATA                TTTTC TAT GAAAG                TTTTGGATAGTTTTT  58 82
 MF1_RS04395 NONE
        mutY 1077162 .. 1077178 +  -6.5  -3.10796   TCCAGGACAGAGTAA              ACCTGCT TCA AGCAGGC              TGTTGAATGCTACAC  58 324
 MF1_RS04425 1079107 .. 1079119 +  -4.1  -2.89564   AAATTCATCATAAAA                TGTCT CTT AGACG                TATATCAACTCAAAA  48 28
 MF1_RS04430 1080523 .. 1080537 +  -2.1  -2.93455   TTGCCCAGTGTAAAG               TGCTA AGAAA TAGCG               TCCTTATGTGTCTAC  41 43
 MF1_RS04435 NONE
 MF1_RS04440 1081740 .. 1081767 +  -6.3  -5.47914   AGAGTATTTAAATTG        CAGTTTCCCTA AAGTAA TTGGGAAGCTG         TTTTTTGTGCTTTTT  87 93
 MF1_RS04455 1085235 .. 1085245 +    -4  -2.55074   AAGGTGGACGTATTT                 TCTT GAA AAGA                 TAAATTAAAATTAAA  45 420
 MF1_RS04460 1088338 .. 1088353 +  -6.1  -2.94161   AACTAGGCGATGTGG              GGCTG ATCAAC CAGCC               GTTTGTAGAAATTTC  56 186
 MF1_RS04490 NONE
        tldD 1095875 .. 1095886 +    -3  -3.92467   TCGATAAATTAGCAT                TCTT TGTA AAGA                 TTGTTCATTATTGTT  55 168
        pdxH NONE
        purD 1109575 .. 1109587 +  -3.3  -3.41051   AAACCAATAGCTTAG                CTGCT CGG AGCTG                TTATAATGACAATAG  48 464
 MF1_RS04590 1116227 .. 1116237 +  -6.8  -4.46212   TCCATATTCTTTCTA                 GCTC TTT GAGC                 TTTTGTCCTAAAAGC  76 342
 MF1_RS04600 NONE
 MF1_RS04605 NONE
 MF1_RS04610 NONE
 MF1_RS04615 NONE
 MF1_RS04620 1125826 .. 1125842 +  -5.2  -4.38154   ATTGTCAAATTCTTC              TTGAAG AACAC CTTCAA              TTTTATCGCAAATCT  68 197
 MF1_RS04640 1130156 .. 1130182 +  -3.7  -4.61566   AAAATACTTTTAGAA         TAGCTAAGCTC GATAA GGGTTTGGCTG         TTTTGTGCTTTCAGC  65 60
 MF1_RS04650 1131919 .. 1131941 +    -2  -5.28561   ATGCACATTGTAAAA           TCTCGG AGTATAGCGGG CCGAGA           TTTTTATTCTCTGTT  70 50
 MF1_RS04660 NONE
 MF1_RS04665 1134532 .. 1134551 +    -5  -2.73529   AAAAATCTCTTATTT            TCTGGATA ATCA TATCCTGA             TCACTTTGTGTCAAA  49 310
 MF1_RS04680 1137003 .. 1137016 +  -3.9  -4.42062   TTTATTTTTTCAAGT               GATTT TCAA AAATC                TTTCTTTGGCACGTA  62 134
 MF1_RS04750 NONE
 MF1_RS04755 NONE
 MF1_RS04760 1157574 .. 1157586 +  -4.9  -4.24786   CTCTGAACAAAACCT                TTATC AGC GATAA                TTTATGTATTCTCCC  64 439
        rpmH 1163327 .. 1163343 +    -8  -3.55622   GTTATAAACCTCTGA              TGCCTG CTTTT CAGGCA              TTTAGCAAAATTGCG  73 100
 MF1_RS04795 NONE
        yidC NONE
 MF1_RS04805 1166293 .. 1166312 +    -3  -2.53422   TGCAGCTGCTAATAA            TCTTGTACT TCC AGTA-AAGA            AATTTTATAAAAATC  42 82
 MF1_RS04810 NONE
 MF1_RS04815 NONE
 MF1_RS04820 1168795 .. 1168805 +  -5.4  -3.10112   TTTATTGACAGAGCT                 GCTT CTC AAGC                 TTAGATCAATTGAAT  54 111
 MF1_RS04825 1169033 .. 1169043 +  -3.2  -4.52949   TTTTAAATCAAGACT                 GCTT TTC GAGC                 TATTTTTTTTAGCCA  62 148
 MF1_RS04840 1173442 .. 1173461 +  -6.4  -5.61881   GACTTTTAAAAAAAA            CTGGCGAT CCAT GTTGCCAG             TTTTTCTTTTTAAAG  89 53
 MF1_RS04890 1188058 .. 1188069 +    -3  -4.27886   CAACAGAGTAATACT                CTTA CTTG TAAG                 TTTGTATCTTTAGCA  60 30
 MF1_RS04895 NONE
 MF1_RS04900 NONE
         alr 1198550 .. 1198565 +  -2.6  -4.37092   CAGCTAACCATATAA              CA-TGCT CAT AGCACTG              TTTTCTCACACGCAT  58 134
 MF1_RS04950 NONE
 MF1_RS04955 1205983 .. 1205999 +  -8.7  -3.55203   ACTAAAAAATATGCT              TTGCGGG TAT TCCGCAA              TTTCCGGGGGCTTTT  77 435
 MF1_RS04960 1208152 .. 1208163 +  -7.2  -3.95986   CAGGATAAGTCACAA                CGCG GTAG CGCG                 TTTCGTTGCGTTCAA  73 136
 MF1_RS04990 1213844 .. 1213858 +  -4.3  -2.71263   TTTTCTCATTTCACC               TTCTC TTATT GAGAA               TCATTAAAAAACGTT  47 134
 MF1_RS05005 1217432 .. 1217446 +    -5  -2.71712   AAAATGCGTAAGGCT               GTTTTC CAA GAAAGC               CTTTAAAGCAACAGA  50 288
 MF1_RS05025 1229359 .. 1229373 +  -5.8  -2.92613   GAAAGACTTCTGCTC               TTTTCT GTT AGAAAA               TAATTTAACGTGAAA  56 101
 MF1_RS05030 1230316 .. 1230329 +  -3.8  -3.08679   ATCATACTGCTTCTA               CGCT GGAGAA AGCG                TCTTGGATAAAAAAA  47 2
 MF1_RS05035 NONE
 MF1_RS05040 1232118 .. 1232131 +  -6.7  -2.91695   AAAAATGACGACACC               TTCCC GTTG GGGAA                TAGTTTAAAGGTAGA  58 107
 MF1_RS05045 1232698 .. 1232709 +  -4.4  -3.15459   CAAGCATCAAACTGT                CAAC ACAT GTTG                 TATATATTATGAGTC  51 524
 MF1_RS05055 1235559 .. 1235575 +  -5.1  -4.07647   AAAAGTGGAGCAAGA              GTTGATG AAA CATCCAC              TTTAATTTCAAATCT  62 238
 MF1_RS05060 1240182 .. 1240214 + -16.5  -2.88427   ATACACTATGGCTTT      TAAAAAAGGCAGCAC ATT GTGCTGCCTTTTGTA      TATATGAAACCTGTT 100 23
 MF1_RS05065 1241914 .. 1241927 +  -2.4  -2.88945   GGAAATAAAATAGAA               GCAA ACAAAA TTGC                ATTGTTATCGGTAGC  41 259
 MF1_RS05070 1242312 .. 1242334 +  -4.2   -3.3197   CAAGCTTATCATCTA          CCCATGGTC CTCTCC GAC-ATGGG           TTATGGCGCTGATAT  51 98
 MF1_RS05075 1243026 .. 1243039 +  -3.9  -4.41206   ATACTCTGTTGACAT               CTTAT CAAA ATAAG                TTTTCTGAAATCCTT  62 133
 MF1_RS05080 1245545 .. 1245577 + -16.5  -2.88427   ATACACTATGGCTTT      TAAAAAAGGCAGCAC ATT GTGCTGCCTTTTGTA      TATATGAAACCTGTT 100 23
 MF1_RS05090 1252088 .. 1252098 +  -3.2  -3.74747   TAGGTTTCCAAAAGC                 GGTG CTC CATC                 TTTAATAACCGTTGG  52 493
 MF1_RS05120 NONE
 MF1_RS05125 NONE
 MF1_RS05130 NONE
 MF1_RS05135 NONE
 MF1_RS05140 1261720 .. 1261731 +  -4.4  -4.47888   GATACCTCTTAAAAA                GAAC GAGA GTTC                 TTGTTTTTGCATTGC  67 46
 MF1_RS05145 NONE
 MF1_RS05150 NONE
       virB9 NONE
 MF1_RS05160 NONE
      virB11 1266213 .. 1266228 +  -3.2  -3.56099   TATGCGAGGGGGGAA              TACCTC ACTA GAGGGA               TTTAACACGCTTATG  50 252
        traG 1268631 .. 1268650 +    -5  -2.82623   ATTGCTTTTATGTCT            GTGTTTAC CAGC GCAAACAC             TCCTTGTGAAGAACC  51 186
 MF1_RS05180 NONE
 MF1_RS05185 1270689 .. 1270702 +  -3.9  -4.83269   CTGACCGGCTAAACA               CAAAA GAAT TTTTG                TTTTTCATCTGATCT  67 29
 MF1_RS05190 1272641 .. 1272658 +  -5.7  -3.50572   AAAGATCCTCCGTTC             TTTAATC TCAT GATTAAA              TTATATCAAGTACAT  57 166
 MF1_RS05195 1274627 .. 1274640 +  -5.3  -3.53224   TTCTTTGAAGAAAAA               GCTTT CAAA AAAGC                TTTCAAAACAGAATG  59 251
 MF1_RS05200 1276460 .. 1276498 +  -4.8  -3.28173   ATCTCTTCGTCTAAT  TTCTTGGCGCCAATT ATTTTATGGA AATTG-CGCCAAGAG   TGTTACTGTTGTGGT  54 68
        murJ 1279433 .. 1279449 +  -3.7  -3.00946   GTCTATAATACTTTG              TCTTGCT TTC AGAAAGA              TCCTTTGTCACAAAA  47 49
        trpS NONE
 MF1_RS05215 NONE
 MF1_RS05220 1282174 .. 1282189 +  -8.2  -4.24432   ATTGTACAAAAAAAA              CGGGCT CAGT GGCCCG               TTTCCTTTTACCTTT  81 438
        fumC 1285905 .. 1285924 + -13.6  -3.98981   ATCGGAATTAGAATA            TCGGACCG CAAG CGGTCCGA             TTCTTATTGGATCTT 100 103
 MF1_RS05250 1289342 .. 1289357 +  -4.8  -4.53036   TAAGATATTGATTTA              TAATGA TAAT TCATTA               TTTTCATATTTATCG  69 476
 MF1_RS05310 1305826 .. 1305840 +  -3.6  -4.46757   GCAAGAGAAGCCGCT               TGTTCA GCA TGAATA               TTTTGTAACTGTATT  65 431
 MF1_RS05335 NONE
 MF1_RS05340 1310857 .. 1310870 +  -3.7  -4.87328   GAAGATGTCATAACC               CGGCG CCGG CGCGG                TTTTCTCTTTATCTC  71 301
 MF1_RS05350 1313391 .. 1313421 + -18.4  -2.87564   TTTAGAGATCCCCTT       TTCCCGGCAGCTGT CGC ACAGCTGCCGGAAA       TCTATGGAGCAGTGA 100 83
 MF1_RS05370 NONE
 MF1_RS05375 1316855 .. 1316869 +  -2.8  -4.10453   CGAAGATGTTATCAC               CCAC CATCGAC GTGG               TTTTCGGAAGATTTC  55 117
        purE NONE
 MF1_RS05495 NONE
        rpmJ 1345295 .. 1345305 +  -3.2  -3.90358   TTGTCTTTAGGATTG                 CGAG TTC CTTG                 TTTGATATCTCATCT  55 97
 MF1_RS05505 1346440 .. 1346458 +  -2.5  -5.47218   AAGGAATAAGTATAG            CTTCTGTG TCAT CA-AGAAG             TTTTTTTCCATGAAA  76 330
        ssrS 1347030 .. 1347041 +  -5.8  -5.02074   TTTCCATCGGTCGTT                GTGG ATCA CCAC                 TTTTTTGGCAAATGA  81 15
 MF1_RS05515 NONE
 MF1_RS05520 1348652 .. 1348663 +  -5.8  -3.34398   GGTAACCTCTCTTCG                GGGA AACA TCCC                 TCTTTGGGGCAACGA  61 36
 MF1_RS05525 1349344 .. 1349360 + -10.9  -2.62983   TTGAACTCTCGACCT              CTCCCTT ACC AAGGGAG              TGCTCTGCCACTGAG  76 217
        murA 1351204 .. 1351216 +  -9.1  -4.08557   GTCTTCATTTCTTTT                GGGGA TTG TCCCC                TTCTTCTTTGGGGGC  85 60
 MF1_RS05560 NONE
 MF1_RS05565 1356977 .. 1356998 +  -5.3  -3.01712   GATAAAAGAACACCA           GG-AAAAACT TGC AGTTTTTTCC           TCTTACCCCACCCAC  54 168
 MF1_RS05570 NONE
 MF1_RS05575 1360105 .. 1360124 +  -3.6  -3.65351   CTTCTCTAACCAGCG            TAGGGTTT CAAC AAATCCTG             TTTCCATGGGAATAG  52 95
 MF1_RS05580 1362715 .. 1362733 +  -5.3  -5.67283   TCTGAATATGGAAAA            GCCCC-TA GAAA TACGGGGC             TTTTTTATTTCGCTT  86 107
 MF1_RS05585 1365143 .. 1365180 +  -7.9  -3.12895   ATCATTCGATGAAAG   GGCACGATAATGTGTAAA ACA TTTGCACATTGT-GCGCC   TATATTCATGGGGCG  66 51
 MF1_RS05595 1367623 .. 1367636 +  -3.7  -3.53091   AGATTGGCATCGTTT               GCGAG AAAA CGCGC                TTTGCGCAAAAAGCT  52 334
 MF1_RS05600 1369067 .. 1369077 +  -2.6  -5.48303   AAATCTCTGCTTAAA                 TTAT GAT ATAA                 TTTTTTTAACATTGT  76 20
 MF1_RS05605 1371538 .. 1371556 +  -3.8  -3.76224   TGTTGCTAAACGCTT             TCAGGAGC AAC GCTTATGA             TTTGGTCGATGAAAA  55 7
 MF1_RS05610 1371786 .. 1371798 +  -5.5  -3.36581   CGATAAATGAACCTT                CTTCC TGT GGAGG                TTGGTTGCCCATTTA  57 31
 MF1_RS05615 NONE
 MF1_RS05630 NONE
 MF1_RS05635 1377185 .. 1377195 +  -5.4  -3.86015   CCAACTTGAAGCGCA                 CCTT GAA AAGG                 TTTATAAGAGAAATG  61 425
 MF1_RS05645 1379647 .. 1379661 +  -3.6  -4.69053   GGTTTTTATTAGCTT               GTTTTT ATG AAAAGC               TTTTGTTAAGTGGTA  67 228
         dut 1380416 .. 1380426 +    -4  -3.04263   TCAACTTCAGAACAA                 GAAA ACT TTTC                 TATTCAGCGTGGGAT  47 181
 MF1_RS05670 1383013 .. 1383031 +  -3.8  -2.71325   TTCTGGCTCAATTAT             TGCGTCGT TAA ACCATGCA             TACGTTTATCGCTCC  45 15
 MF1_RS05675 1383500 .. 1383530 + -11.3  -5.10767   GATTCTATCCACCTA       CGATGCTTTCTCT CTTCA AGAGAAAGCATCA       TTTTTGTCTTCCATG 100 61
 MF1_RS05715 1393195 .. 1393214 +   -15  -5.16206   CTCCATTCATCAAAA            GCCCCGCT TCAA AGCGGGGC             TTTTTCTGTTACTTT 100 167
 MF1_RS05725 1396508 .. 1396524 +  -2.9  -2.73268   ATGGATCTCATCCCA              TCCCTAT ACA AAAGGGG              TAAATTTCTCCTCTT  41 378
 MF1_RS05780 1406536 .. 1406548 +  -6.9  -2.81471   GATACATAAATTTTC                CTCGC TTT GCGGG                TGTCCTGGGATTCTG  62 310
 MF1_RS05790 1408464 .. 1408474 +    -4  -2.94912   AGAAAAATGATGTTA                 TTTG CTT CAAA                 TCTATAAATTCCCAC  46 51
         efp NONE
 MF1_RS05800 1410532 .. 1410547 +  -6.2  -2.58183   AACCTTTTGGCAAGG              CTTGAA TAAA TTCAAG               TGCATTGGCTGTTTT  54 489
        rpmE 1412546 .. 1412568 +    -7  -5.76633   ATAAAAATGGGATAT           CCTGCCTTAA GCC TTAAAGCGGG           TTTTTTTATGTGTCA  93 199
 MF1_RS05840 1419087 .. 1419098 +  -2.2  -2.79098   TTAAGGCAATGGAGA                CGAT TCGT GTCG                 TAATTGATAGATAAA  41 0
 MF1_RS05845 1419812 .. 1419825 +  -6.7  -2.81784   TCTTAACCTTTAGCC               GGTTC ATAA GAACC                CTATTATTTATTCCT  58 335
 MF1_RS05870 1423252 .. 1423267 +  -2.6  -5.62288   TAACCATTCATCTTC              TTTTTG CGCA CAAGAA               TTTTTCTTTTCTTCC  81 88
 MF1_RS05890 1428277 .. 1428296 +  -5.6  -3.64703   TGAATTAAAAATAAA            CCACCGGT CACT GCCGATGG             TTTAAATAAAAGAGA  59 461
 MF1_RS05900 NONE
 MF1_RS05905 1432310 .. 1432324 +  -6.4  -4.15854   AGAACACTCAAAGTT               CAGGCT TTT AGTCTG               TTTTCCGGTACATTT  71 276
 MF1_RS05910 1432928 .. 1432938 +  -3.2   -2.8805   TGAAACAAATGCAGA                 TAGC AAA GCTG                 TATATGCCGCATAAT  44 1
 MF1_RS05920 1435449 .. 1435463 +  -5.6  -3.16564   CCCGTGTCCGATCTC               CACCGG GTT CAGGTG               TTAATGAAATACGAA  54 504
 MF1_RS05930 1436838 .. 1436857 + -13.6  -5.01546   AATCAAACTTTTCAA            TGCCCGCT TTGA AGCGGGCA             TTTTTCTCTGCCTTT 100 66
         fsa 1449371 .. 1449386 +  -2.6  -3.00658   ACGCACATTTCCCAT              TCCTTGT GCA ACA-GGA              GTATTTTTCATATCC  43 178
 MF1_RS05995 1453747 .. 1453765 +  -9.6  -3.08471   CGGCATCAACCATAA             GGGAGTAT AAA ATGCTCCC             TTAAATACAATTGTG  77 453
         acs 1456116 .. 1456128 +  -3.3  -3.53811   ACTATGAAGCAATAA                GAGCA AAG TGCCC                TTTGCGAACCGTAAA  50 237
        ftsE NONE
 MF1_RS06010 NONE
 MF1_RS06015 1458707 .. 1458723 +  -5.9  -3.53091   TAGTCTTTACACACT              GGTTTTC TCT GAAAATC              TTTCGAACCAGCCCT  62 38
 MF1_RS06050 1470254 .. 1470265 +  -2.2  -3.23733   TCTAAGAAAAAAATT                GTAC CATT GTGC                 CTTTTGTAGCCTAAA  44 36
 MF1_RS06060 NONE
 MF1_RS06065 NONE
        trwL 1473445 .. 1473464 +  -2.8  -2.90813   TCAATGCAAGCATTT            CTCACAGTG CAG CACAG-GAG            TCATTTGCACCAATA  42 126
        trwL NONE
        trwL NONE
        trwL NONE
 MF1_RS06090 NONE
 MF1_RS06095 NONE
 MF1_RS06100 NONE
 MF1_RS06105 1478671 .. 1478707 + -11.7  -3.06483   GAATTTCTCCTATGT    CACTGGTTTTTTCTGCT CTC AGAAGTAGAAACCAGTG    TCTATAATTTCAGTG  84 53
 MF1_RS06110 1479940 .. 1479967 +  -4.3  -3.24414   TCGAATAAAGAGGAA        TGTTAAAATGA GATCAA TCATTTTTACA         ATTTTGATTGCGAGT  51 184
 MF1_RS06115 NONE
 MF1_RS06120 1481060 .. 1481096 +  -7.3  -3.06483   GAATTTCTCCTATGT    CACCGGTTTTTTCTGCT CTC AGAAGTAGAAACCAGTG    TCTATAATTTCAGTG  63 53
 MF1_RS06125 1482317 .. 1482344 +  -4.3  -3.24414   TCGAATAAAGAGGAA        TGTTAAAATGA GATCAA TCATTTTTACA         ATTTTGATTGCGAGT  51 184
 MF1_RS06130 NONE
 MF1_RS06135 NONE
       virB9 NONE
 MF1_RS06145 NONE
      virB11 1486223 .. 1486243 + -12.7  -4.57581   AAATTTCAACAAAAA            GCCGTAATA AAT TATTACGGC            TTTCTTATTTAACCT 100 67
 MF1_RS06190 NONE
 MF1_RS06195 1496272 .. 1496283 +  -4.4  -3.25312   TCTCAAGCGCCAAAG                CATG AACA CATG                 TTGCTAACTCTTTTT  51 79
 MF1_RS06205 NONE
        cobS 1498407 .. 1498417 +    -4  -3.93383   TGGACAAGAGCTTCC                 TGAA TCA TTCA                 TTTAGTGTGTCTTAC  57 10
        cobT 1500426 .. 1500466 +  -5.4  -3.35992   GAAAAAACAACATAC  CTCTTCTTTTGCTGTTCT AACAA AGGACTGCGTGAGGAGAG  TTCCTTAACCTGGGT  57 101
 MF1_RS06230 1501972 .. 1501990 +  -8.2  -3.05597   CTCTCCACTCTTAAA             GAAGATGC TGA GCATTTTC             GTTTTAAAAGATGCA  68 48
 MF1_RS06255 1509858 .. 1509886 + -14.8  -2.76098   AACCCTTTTAAAGAA        GATCCGTTTTTG TTCGT CAAAAACGGATC        ATATTGTTCTTCTCT  95 73
 MF1_RS06280 1518072 .. 1518085 +  -2.4   -3.5944   TACCTTTGCAGCAGG               GTTG ATTGCA CAAC                TTTAACACTCTGCCT  47 7
        tsaD 1524783 .. 1524797 +  -2.1  -4.16016   CAAAGAGGCGATAGG               TGTGA AGCGG TCACG               TTTATTAAAGGATGC  54 428
 MF1_RS06310 1526642 .. 1526675 +  -2.4   -4.4595   GCCACAGTCTGTTAC     TACATTAAGCGCAA GGATGG TGGCGCTTCATGGA      TTTTACATTTTATGC  57 268
 MF1_RS06315 1528251 .. 1528263 +  -4.9  -3.87869   CAAAACGGATATCGT                CTTAA TAT TTAAG                TTTATCCAAAGTTAC  59 14
 MF1_RS06345 1535679 .. 1535701 +  -6.2  -3.01712   AAAGCTTAACCGATT           GAGCTTGCAT CAA AAGCAAGCCC           TGTTGGCGAAAGACA  57 188
 MF1_RS06380 1543591 .. 1543624 +  -9.1  -2.73364   ACCGTGATCATTGGG     GGTTATGAAAC-GGAA GGC TTCAAGTTTCATAACC     TCCTTAGAATCACAA  67 458
 MF1_RS06390 1545652 .. 1545665 +  -3.9  -4.07885   TCATGATTTAAAAGA               TATTG TTTT CAATA                TTTTCGAAAGCCGTA  57 477
 MF1_RS06395 1547039 .. 1547064 +  -2.7  -2.55015   CGTATGGACACTCTT         TTGGCTGATAGT GCT GCTATCA-TCAA         TGAATTCGGTGAAGT  41 122
 MF1_RS06420 NONE
 MF1_RS06425 1552923 .. 1552933 +    -4  -2.98014   GCGGAAATTCGTTAA                 TTCA TAT TGAA                 TATAATTGATTCGTT  47 26
 MF1_RS06430 NONE
 MF1_RS06435 NONE
 MF1_RS06440 1554594 .. 1554605 +  -5.8  -2.70932   CACGCATTAAGAACT                TCGC CAAA GCGA                 TACTTGAAACAGGAC  51 491
        nspC NONE
 MF1_RS06485 1563490 .. 1563509 +  -7.8  -5.04385   GAAAGATACAGAAAA            CCGCTCCT AAAA AAGAGCGG             TTTTTTAAAAATATA  88 60
 MF1_RS06530 NONE
        mtaB NONE
        ftsY NONE
 MF1_RS06545 1579824 .. 1579835 +    -3   -2.7361   TTGCATTTATCGATA                CAAA TTAT TTTG                 TAGATTTATCATTGC  43 46
        gloB 1580860 .. 1580892 +  -4.2  -3.63744   TATTGAAGGACATAT      CGCTTGTGTTTTTA GAAAA TAAAAACTCATGTG      TGTTTTAAGAGAAAA  55 236
 MF1_RS06580 1586782 .. 1586803 -  -2.3  -4.00934   ACTCGAAACAGCAAA           GATTGTATCC ACA GGAT-CTATC           CTAACAAAAAAAACT  52 49
        mnmE 1585421 .. 1585433 -  -4.9  -4.44046   TTTACGTGAAACAAA                GTATT TAA AATAC                ATAATATTCCTAATC  67 75
        mnmG 1583509 .. 1583519 -  -6.8   -3.2404   AGAAACATTCATTAA                 GCTG ATT CAGC                 CTTTTCACGTCGTTG  61 11
        rsmG NONE
 MF1_RS06560 NONE
 MF1_RS06555 1580629 .. 1580645 -  -6.7  -3.07871   AAAAGAAAAGATAAT              TTTAAAC CCT GTTTAAA              TTGACATTGCATTTG  59 480
 MF1_RS06525 1574924 .. 1574939 -  -2.6  -3.91084   CCATTTTCAATGAAA              TTCAAG ATTT CTTAAA               GATCTGTTCATATAT  53 73
 MF1_RS06520 1573575 .. 1573589 -  -2.8  -4.96646   TTATAGAAGCAAAAA               TCCTCC ACA GAAAGA               CTATTAGAAAACAAC  66 149
         mdh 1572435 .. 1572454 -  -5.1  -3.41704   ATAACATTTTAAATA            TTCTGTT TTCATG AACAGAA             TCTCGTTTAATCTAT  55 37
        sucC NONE
        sucD 1570221 .. 1570262 -  -6.7   -3.1247   ACTTTTTATATCCAA TGTTCCACCTGGATAAGGA TATA TCCTTATCCAGATAAAATT  TTCTCTTATCCTCTC  59 31
 MF1_RS06500 1567103 .. 1567120 -  -2.1  -3.31983   CATACATCAGAGTAA             TTAAATT TAAG AACTTAA              CGCATCTTCAAGAAA  44 14
        odhB 1565856 .. 1565868 -  -4.1  -3.60798   ACTTTTACAAATCAA                GAACA AGG CGTTC                CGGATCTTCTAAACT  55 2
 MF1_RS06490 1564384 .. 1564395 -    -3  -3.57263   AGTTTTATTCTCAAA                TCTT AACG AAGA                 TGCCCATAACCTAAA  50 36
 MF1_RS06475 1560294 .. 1560312 -  -5.4  -3.78934   TTGCCCTTACAATAA             TAAGATTT AAT AAACCTTA             AAAATATTTAAAATT  61 116
 MF1_RS06470 NONE
 MF1_RS06465 NONE
 MF1_RS06460 1555310 .. 1555326 -  -2.3   -3.0244   CGAAAAAAGGGAAAG              GACAAAA ATA TTTCATC              GACTCATTTCCCTCT  42 21
 MF1_RS06455 NONE
 MF1_RS06450 NONE
 MF1_RS06445 1553847 .. 1553859 -  -4.1  -2.64318   ATACCAGATAATCCA                GAGCT GAT AACTC                AGACAAGTTCTTATC  45 330
 MF1_RS06415 1549951 .. 1549961 -  -2.6  -3.00946   TTGCTTTATAAAGTA                 TTTT TCA AAAA                 CATCACCTCTTCTTT  43 39
 MF1_RS06410 NONE
 MF1_RS06405 1547742 .. 1547757 -  -3.3  -3.77196   TTACTACGGATCAAA              GCAAT TATCGC ATTGC               GTGATGACTCACATC  52 426
        thiD 1543109 .. 1543125 -  -9.5  -2.62983   CTCAGGGGTAGAGCA              CAACCTT GCC AAGGTTG              GGGTCGTGGGTTCGA  70 299
 MF1_RS06360 1539145 .. 1539157 -  -3.5  -5.33405   CTTATGAAAGAAAAA                TTTAT TTC ATAAA                ACTTTCAAATAAACT  74 42
 MF1_RS06355 1537484 .. 1537501 -  -2.7  -3.94276   AAAATATCTTATAAA             TTTCTGA AAAA TCAGCAA              AATTTAACAAAAAAG  53 46
 MF1_RS06350 1535848 .. 1535864 -    -8   -4.1552   CACCCTTTCAAGAAA              CCCTTC ATCTG GAAGGG              AAAAAACGATTTTCT  81 182
 MF1_RS06335 NONE
        lysA NONE
 MF1_RS06325 1529208 .. 1529222 -  -2.8  -3.10098   ATGACTCCAAAAGCA               GCAGAA TGT TTCTCC               GATCATTTCACTAAA  43 135
 MF1_RS06320 1528336 .. 1528346 -  -3.2  -5.22258   GAAAGCAAAATAAAA                 CTCA AGA CGAG                 AGAGAACTCTCACAC  74 16
 MF1_RS06300 NONE
 MF1_RS06295 1520136 .. 1520158 -  -4.2  -3.28542   GCACAAGAAAACAAT           TTCAATGAAC AAT ATTCATTGTA           GCCCTTCTTTTTAAA  51 36
 MF1_RS06290 NONE
 MF1_RS06285 1517816 .. 1517835 -  -8.6  -3.32536   AAATCATTCGTATAA            GC-CGCTTC AAT GAAGCGAGC            CAAACAATTCCTGTG  70 298
         ffh NONE
 MF1_RS06265 NONE
        rpsP 1509858 .. 1509886 - -14.8  -3.91488   AACCCTTTTAAAGAA        GATCCGTTTTTG TTCGT CAAAAACGGATC        ATATTGTTCTTCTCT 100 96
        htpX NONE
 MF1_RS06245 NONE
 MF1_RS06240 1505167 .. 1505178 -  -4.4  -4.48175   AAAATTCAAGCAAAA                TAGC TTTG GCTA                 ATCATAGCACGCACC  67 130
        purH 1503290 .. 1503300 -    -4  -3.97753   AAATATCAAAAAAAG                 TTGT GCT ACAA                 TTGTTAACTGTCATG  57 231
        rpmB 1500581 .. 1500592 -  -7.2  -4.20516   CTCGTAGTCAACAAA                GGCG ATTA CGCC                 GCTTGTTCAGCTTTT  75 19
 MF1_RS06200 1496201 .. 1496215 -  -2.1  -4.78764   GAAATTTATCAAAAA              GCGCAC CCCC GTGC-C               TAAAAGACTTTTGAA  62 53
        rimM NONE
        trmD 1492960 .. 1492975 -  -7.6  -4.34402   TCCTTCACAGGAAAA              CTCTCT AAAA AGAGAG               CCATACAAATACACC  81 56
        rplS 1492313 .. 1492328 -  -6.1  -5.74122   GACCACACAAAAAAA              GCGAC ATAAAA GTCGC               TTTGTCATAAACTCT  88 55
        sdhC NONE
        sdhD NONE
 MF1_RS06160 NONE
 MF1_RS06155 1488134 .. 1488144 -    -4  -4.13995   TCTTTACAAATGAAA                 TGTT GCA AACA                 ATTCCACCTTTACTC  59 303
 MF1_RS06055 1470757 .. 1470776 - -12.2  -3.47617   ATTGCAAACCCATAA            GTGCATGC TATA GCATGCAC             TTGCACAAACTTGCC  90 222
 MF1_RS06045 1466217 .. 1466227 -    -4  -3.36166   GTGGTAAAAAAGAAG                 TTCT CAT AGAA                 AATGCTCCCAAACCG  51 144
 MF1_RS06040 NONE
 MF1_RS06035 NONE
 MF1_RS06030 NONE
 MF1_RS06025 NONE
        macB 1460008 .. 1460037 -  -5.7  -2.99097   AATAATAATATGACA       CCGTGCGATTCAT GATG ATTAATCGCGCGA        GAGGGCAACAACGGG  54 14
 MF1_RS05990 NONE
 MF1_RS05985 1448773 .. 1448796 -  -8.2  -3.01162   TCATCATGAAAGAAG          CGGCTATTTT AGCA AAAATTGCCG           ACAATATTTGCATCA  63 444
 MF1_RS05975 1445473 .. 1445485 -  -3.3  -4.25104   TTTTTTGCACCAAAA                GAGCT TCT AGCAC                TGTTCCGGAAAAAGT  57 410
 MF1_RS05965 NONE
 MF1_RS05960 1442980 .. 1443001 -  -4.5  -2.56914   CATTCCATTAAGTTA           TTACGAAAA AATC TTTGCGTAA            GTATTAAGAACAACA  47 4
 MF1_RS05955 1442053 .. 1442064 -  -7.2  -3.75153   CCTTTTCAATTTAAA                GCGC TTCA GCGC                 CCGCAATAATTTCGA  70 9
        atpD 1440425 .. 1440435 -  -6.8  -3.14132   TTTTCTCTTTATGAA                 GCAG CTT CTGC                 AATAAGACGTTTTCC  59 8
 MF1_RS05945 NONE
 MF1_RS05940 NONE
 MF1_RS05935 1437078 .. 1437101 -  -7.4  -2.67055   ACAACAGGCATATTA          GGAATGAGCT TACT AGCTCTCTCC           TGTTCAAGCTCTAAA  63 167
        ispG 1434887 .. 1434902 -  -7.6  -3.58269   GAACTCATCGCTAAA              GCAGAA GCGC TTCTGC               TGCCTTTTGGCACCA  66 159
 MF1_RS05915 1433183 .. 1433198 -  -2.5  -4.22377   CTGATAAGAAAAAGA              GAGCT CTTACC AGCCC               CTCACACAAGGACCA  55 267
 MF1_RS05895 1428273 .. 1428300 - -10.7  -4.93547   TTAATGAATTAAAAA        TAAACCACCGG TCACTG CCGATGGTTTA         AATAAAAGAGAAAAC 100 371
 MF1_RS05885 NONE
 MF1_RS05880 NONE
 MF1_RS05875 1422908 .. 1422918 -  -3.2  -4.24338   AAAAACAGCTTAAAA                 CAGA GAA TCCG                 GAGAAAAATGCAAAT  57 293
 MF1_RS05865 NONE
         pyk 1420703 .. 1420714 -  -4.4  -3.90316   ACTCCCCCAAAAATA                TCAC TCGT GTGA                 ACATTCAAACGCCCT  59 30
 MF1_RS05855 1420206 .. 1420216 -  -4.6  -3.84246   ATTATCAATCAACAA                 CCGA TCA CCGG                 GTTTAACAGCTGCTA  57 316
         tkt 1416450 .. 1416472 -  -7.1  -3.30124   GGCCATTTCCCATAA          TGGCACGCAA ACTC TTGCGT-CCA           ATACGACAGATCCAT  65 59
         gap 1415310 .. 1415323 -  -8.1  -5.00616   TTCTGTTGCAAAAAA               GGACC TTCA GGTCC                TCTCTTCGTACACTG  90 18
 MF1_RS05820 1413733 .. 1413758 -  -6.1  -4.11216   TCTTCATTTCCAAAA         GTGAGCAATGC ACCA GCATAGCTTAC          ACAACACAAGTTATT  69 43
 MF1_RS05815 1412639 .. 1412649 -  -5.4  -2.92192   TTGCATTGAAGCATA                 GCTT TTA AAGC                 ACAAGCTTTATTATT  52 43
 MF1_RS05805 1410049 .. 1410061 -  -4.1  -5.42265   CCAAATTAGAAAAAA                CCCTT AAA AAAGG                CATTTGAACCACAAA  82 137
        OpgC NONE
 MF1_RS05770 1403376 .. 1403386 -  -5.4  -3.85698   TCCCTTTCCCATAAA                 GCAA CTC TTGC                 ATGTGCACTTCTAGA  61 284
        ruvC NONE
        ruvA NONE
        ruvB NONE
        ybgC 1400436 .. 1400446 -    -4  -3.53012   TTTTGTCCCTCTAAA                 TGAA AGG TTCA                 TCTGTTAAATTCTAT  52 141
        tolQ NONE
        tolR NONE
 MF1_RS05735 NONE
        tolB 1396435 .. 1396445 -  -3.2  -5.88565   TTCATAACAAAAAAA                 CAGA AGG CCTG                 AATGACGGTTGCTTA  89 197
 MF1_RS05710 1391022 .. 1391055 -  -4.7  -2.67667   TTATTTAGTAAACAT     CACTATTGAAGGA GGATACAT TCTTTCAATAGCG      TCTCAAGAATAACTG  50 175
         pal 1390130 .. 1390144 -  -4.2  -4.12902   TAAGCACCGTGAAAA               GCCTCT TTA AGAGCC               TATTCAAATCATAAT  62 356
 MF1_RS05700 NONE
 MF1_RS05695 NONE
        tilS NONE
 MF1_RS05685 1385576 .. 1385590 -  -2.8  -3.55815   AAATATTGTTTCAAA               GACTTA AGA TGAGTC               TGCACGCCCCCTCAA  48 76
 MF1_RS05680 1383735 .. 1383747 -  -6.3  -2.52896   TGATTTTTCAACGGA                GATGA TAA TCATC                AGCAGCCAAAATTCA  56 79
 MF1_RS05665 NONE
 MF1_RS05660 1380416 .. 1380426 -    -4  -3.82191   TCAACTTCAGAACAA                 GAAA ACT TTTC                 TATTCAGCGTGGGAT  55 469
 MF1_RS05640 1377857 .. 1377874 -  -6.9   -2.6197   GGAAACAGGAATGCA             GGAGTGG ACAA CCGCTCC              TTTTATCGTTTTAGG  61 392
 MF1_RS05625 1375136 .. 1375155 -  -6.4  -2.79952   AAAATGAGAGATAAG            GCGCTATC AGAT GATAGCGT             AGAGAATTCTAAGGA  58 51
 MF1_RS05620 1373282 .. 1373296 -    -5  -4.38843   CAAAAGATTAATAAA               TAGCAA CAA TTGCCA               TAATGACAAAAACGA  67 3
 MF1_RS05590 NONE
 MF1_RS05555 1353984 .. 1354000 -  -3.1  -2.75039   GAGAGATGTCAATCA              TTTTATC CTT AATAAAA              GATATATTTTCAGTC  43 229
 MF1_RS05550 NONE
 MF1_RS05545 1352944 .. 1352959 -  -3.3  -4.59773   TTTCAGCCCGAAAAA              CTTCT CGAACC AGAAG               AACTTCCCCCTCTTG  62 357
 MF1_RS05540 1351128 .. 1351147 -  -3.5  -5.06816   AGGTTGGAAGAAAAA            TTAGCCC GGTGTG GGGCTAT             CATTCAACGCATAAC  71 152
 MF1_RS05530 1349298 .. 1349309 -  -2.2  -3.95674   AAAACGTCTAAACAA                TGCC GCTA AGCA                 ATGGTGCTGCGAGAG  52 27
 MF1_RS05485 1340871 .. 1340883 -  -5.5  -3.50853   CTGCCCGAAGCAGAA                GAGCT TTC AGCCC                GAAGAACTTCTCGAA  57 381
 MF1_RS05480 NONE
 MF1_RS05475 1339125 .. 1339136 -    -3  -4.45544   TTCCAGCAATCAAAA                GAAA ATAT TTTC                 ACCCTAACCATGAAA  60 314
 MF1_RS05470 NONE
 MF1_RS05465 1338083 .. 1338138 - -22.2  -4.08064   AATTTGCTCTCAAAA GCTTTTGTAAAAAAGAGGCAGCGCTC TTGA GAGCGCTGCCTCTTTTTTACAATATT AAGATATACAAATAG 100 59
 MF1_RS05460 1337001 .. 1337024 -  -3.9  -3.63744   CTCCTCTTTAAAAGA          GGGCATTTT ACGGCA AAAACACCC           CTCACTTCCTTAGCA  52 484
 MF1_RS05455 1335645 .. 1335667 -  -3.5  -2.64616   CCTTTATCTATATTA           TAGCTCA CGCGTTTTT TGAGCTA           CGCGTCATTTTTCAG  43 217
        infA 1335363 .. 1335377 -  -2.1  -3.44552   ATTTTAGGAACAATA               CTGCA GCACT TACAG               CAAACAAAAACTACC  45 47
         maf NONE
        yacG 1334054 .. 1334069 -  -2.5  -4.11216   CCCCTAGCTTTAAAA              TCGGG TTCTTC CCCAA               ATCAAACGCTCAACT  55 119
        clpB 1330389 .. 1330404 -  -3.2  -4.11897   ATAAATCGATATAAA              CCCTGC TTTC GCAAGA               TAATGCTCTAGAAAG  57 300
 MF1_RS05430 1329651 .. 1329661 -  -3.2  -2.97021   CTCTCAAATACCACA                 TCCC CCA GGAA                 CCACGATCTTCAGGA  45 51
 MF1_RS05425 1329363 .. 1329376 -  -6.7  -3.14132   CTGCTTCTCCAGTAA               CTTGC AAAG GCAAG                ATCTTTGCGAATAAT  59 130
 MF1_RS05420 NONE
 MF1_RS05415 1325531 .. 1325545 -  -3.5   -2.8547   ATGGTCTACATTATA               CGCTC GATTT GAGCA               TTTGCAGGATTTCCC  44 6
 MF1_RS05410 1324248 .. 1324264 -  -5.7  -5.65927   TATTGAAATAAAAAA              GCCGGCA AAA CGCCGGT              TATTGACATTCCCCA  86 397
 MF1_RS05405 1322966 .. 1322984 - -11.8  -3.60364   TTGAGAAGAAGAAGA             GGAAAGCT TGC AGCTTTCC             TGCTTTTAAAAATAT  91 139
 MF1_RS05400 1321916 .. 1321931 -  -2.6   -2.6336   AACTGGAAGAAAAGC              CATTGAG AAC CTCA-TG              AAAAGAATATTTGAA  41 280
 MF1_RS05395 NONE
 MF1_RS05390 NONE
 MF1_RS05385 NONE
 MF1_RS05380 1317405 .. 1317418 -  -6.7  -3.53091   ATTCTTCTTCCGAAA               GGCAA AATA TTGCC                TCTTTGAATAAAAAA  64 345
 MF1_RS05365 1314952 .. 1314987 -  -4.8  -5.40072   CTTTTTTTAAAAAAA    GAACGAGACATCATCA GAAG TGATGATATCCCTTTG     CAATGCTTTATTGGG  83 353
 MF1_RS05360 1313612 .. 1313635 -  -3.9  -4.77165   TGCCTCACAAGAAAA          TCAGAAATC TTCATT GCTTTCTGA           ATCGAAAGCAAAAGA  67 397
 MF1_RS05345 1310586 .. 1310598 -  -4.1  -5.00616   TCTTTTTTTAAAAAA                GCGTT TAA AACAC                TTTAGAACGAAAAAG  73 250
 MF1_RS05330 1308311 .. 1308321 -  -6.8  -4.56802   AAAGAAATAGCAAAA                 GCTC GCA GAGC                 TGGTAGAACCAAAAG  76 85
 MF1_RS05320 1306093 .. 1306108 -  -3.2  -3.71873   CCACGGAGACTCAAA              GAAGCA ATCA TGCCCC               CTCTTCTCCCCAAAA  52 84
 MF1_RS05305 1300719 .. 1300736 -  -5.5  -3.85698   GCCCTCCGGGATAAA             CCGGAAA ACCT TCCCCGG              CATTATCTCATAAAA  61 382
 MF1_RS05300 1300393 .. 1300404 -  -4.4   -3.7229   ATAAAACATGCGAAA                CTCT TTGA AGAG                 AGATTTCAAAATTTG  57 252
 MF1_RS05295 1300177 .. 1300187 -    -4  -4.30719   GCCTTTCAGAACAAA                 CTTT TCA AAAG                 CAACATGTCTGAATA  62 131
 MF1_RS05290 NONE
         rrf 1296796 .. 1296823 -  -2.8  -4.40132   ATGAAGGATAATAAA        TTAAGCGTAA TTTTTTGT CCACGCTTAA         TTGTTTTCTTGGTTT  58 93
 MF1_RS05280 1296360 .. 1296379 -  -3.5  -3.27743   GAGCATTAACCAAGA            CATGAGC CAAAAT GCTCCTG             TGAGGTTTTGTCCTT  47 348
 MF1_RS05275 1294712 .. 1294731 -  -5.7  -5.27335   GTTTGCAAACAAAAA            GCTGCAC CCGATT GTACAGC             TTTTTATTGGTTTCA  82 62
        pyrF 1292744 .. 1292762 -  -6.6  -3.61646   AAGGGGATAAACTAA             CCTCAACC TCA GGCTGCGG             AAGACTTTTTGCACT  64 310
 MF1_RS05265 1290374 .. 1290385 -    -3  -4.86731   CGTTTTTAAATAAAA                TGAA CTTC TTCA                 ATAAAACGACGAATA  68 252
 MF1_RS05245 1286310 .. 1286323 -  -4.5  -4.71223   CCACAAGAGACAAAA               GGAGA GAAA CCTCC                TTAAGAAAAACCTCG  70 243
 MF1_RS05235 NONE
        groL 1282174 .. 1282189 -  -7.5  -5.94713   ATTGTACAAAAAAAA              CGGGC TCAGTG GCCCG               TTTCCTTTTACCTTT 100 51
 MF1_RS05115 1256084 .. 1256094 -    -4  -2.52193   ACCAGATGCATGAAT                 CATA ATA TATG                 GCTCAATGATTGTTA  45 157
 MF1_RS05110 1255048 .. 1255060 -  -5.5  -3.48276   TTGTTTTTTACACAA                GCCAC GCA GTGAC                AAAAGCACCGCAGAG  57 512
 MF1_RS05100 1252862 .. 1252875 -  -2.4  -4.54477   TGAAAACGCACAAAA               TCAG ACATTA CTGA                AGTGCCCACATGATT  59 19
 MF1_RS05095 1251725 .. 1251735 -    -4  -3.75479   CAAAAGGTAAGACAA                 TGAT GAA ATCA                 GATCTTCAGACATTT  55 158
 MF1_RS05085 1247612 .. 1247623 -  -3.6  -5.24129   CTCTCCCATAAAAAA                GAGG CGTT CCCC                 CCCCCCACGACGCAA  76 341
 MF1_RS05050 1233077 .. 1233096 -  -2.8  -4.16943   CCTTATACTTTAAAA            TAAGGGAG AAAA CCCTCTTA             CAACTGACTGCAACT  55 23
 MF1_RS05020 1222334 .. 1222352 - -14.6  -5.72622   TTTATAAACAAAAAA             GGCAGCAC ACT GTGCTGCC             TTTAGATCAAAGTCT 100 65
 MF1_RS05015 1218625 .. 1218643 - -14.6  -5.72622   TTTATAAACAAAAAA             GGCAGCAC ACT GTGCTGCC             TTTAGATCAAAGTCT 100 65
 MF1_RS04995 1214099 .. 1214111 -  -3.5  -5.13343   GAATTCAAAACAAAA                TAAAA TGT TTTTA                AAGAAAGTTCGTGAA  71 457
 MF1_RS04985 1211740 .. 1211752 -  -3.5  -3.92324   AAATTAGACAAAATA                TTAAA ACA TTTAA                AAATTTGACTATTGC  55 34
 MF1_RS04965 1207676 .. 1207693 -  -8.5  -2.99392   GAAACGAAAAAAATT             CTTGATC CTAA GATCAAG              TTAACAGCCACGGCT  67 461
        gcvT NONE
        gcvH 1202477 .. 1202497 -  -4.7  -5.93809   TGCCGAGAAAAAAAA            GAGCGTTCT TGC ATAACACTC            ATCCAATCAATGTTT  91 24
        gcvP 1199647 .. 1199667 - -11.9  -4.66609   TACGTGATTCAAAAA            GCCCACACA AAA TATGTGGGC            TTTTCTCGTCAATGC 100 53
 MF1_RS04925 1195351 .. 1195377 -  -5.8  -2.68821   AAACAATTGAGATCA         CATTGCGAACAC CAA ACGCACGCAATG         CAATTAAAGCAATTA  55 494
 MF1_RS04915 1194057 .. 1194075 - -10.2  -5.23292   TCATACAAAACAAAA             GACCGGGC AAT GCCCAGCC             TTATAAAACACTTTT 100 129
 MF1_RS04910 1191899 .. 1191917 -  -2.4  -2.72049   CACACGCCCCAATTA             CTTTACGA CCA CCACAAAG             GAAAAACTTAAATCA  40 33
 MF1_RS04905 1191184 .. 1191211 -    -5  -4.52345   ATACTACGAAATAAA        GCTTCTCTCA-CA CCT TGCTGAGAAAAAC        AAGAGACCAAAAAAA  69 107
 MF1_RS04885 1185101 .. 1185118 -  -5.5  -3.85698   GCCCTCCGGGATAAA             CCGGAAA ACCT TCCCCGG              CATTATCTCATAAAA  61 382
 MF1_RS04880 1184775 .. 1184786 -  -4.4   -3.7229   ATAAAACATGCGAAA                CTCT TTGA AGAG                 AGATTTCAAAATTTG  57 252
 MF1_RS04875 1184559 .. 1184569 -    -4  -4.30719   GCCTTTCAGAACAAA                 CTTT TCA AAAG                 CAACATGTCTGAATA  62 131
 MF1_RS04870 NONE
         rrf 1181178 .. 1181205 -  -2.8  -4.40132   ATGAAGGATAATAAA        TTAAGCGTAA TTTTTTGT CCACGCTTAA         TTGTTTTCTTGGTTT  58 93
 MF1_RS04860 1180742 .. 1180761 -  -3.5  -3.27743   GAGCATTAACCAAGA            CATGAGC CAAAAT GCTCCTG             TGAGGTTTTGTCCTT  47 348
 MF1_RS04855 1179094 .. 1179113 -  -5.7  -5.27335   GTTTGCAAACAAAAA            GCTGCAC CCGATT GTACAGC             TTTTTATTGGTTTCA  82 62
        pyrF 1177126 .. 1177144 -  -6.6  -3.61646   AAGGGGATAAACTAA             CCTCAACC TCA GGCTGCGG             AAGACTTTTTGCACT  64 310
 MF1_RS04845 1174364 .. 1174384 -  -6.9  -5.27476   CTTAACAAAAGAAAA            TGGTCATTG TGG CAATGAACA            TGTATTTAAATCAAG  89 36
 MF1_RS04835 1171546 .. 1171592 - -10.5  -4.29176   AGAGCCAATTTAAAA CAG-ATGTTTTTCTGCCAATTT TTCT AAACTAGCAGAAAAACGTGCTG CTATGCAGGCGCTAC 100 234
 MF1_RS04785 1160984 .. 1160996 -  -2.7  -3.96337   TGAAAAAGCAGGAAA                CTTCA GCA TGAAA                ATACTTGATCTTACA  53 492
        rsmI NONE
 MF1_RS04775 1159248 .. 1159259 -    -3  -3.50133   TATGCTCATAAAAAC                GAAA TATT TTTC                 ATTTACCATGGTTAA  48 57
 MF1_RS04770 1158923 .. 1158933 -  -3.2  -3.42338   AACGAAGCTCAAACA                 GCAC TTC ATGC                 ATTTTAACTAACATA  48 29
 MF1_RS04765 1158010 .. 1158025 -  -4.7  -3.56099   GACAATTTTGCTAAA              CCTTG TTCACG CAAGG               ATAAAAAAACGCGCA  57 81
 MF1_RS04745 1152223 .. 1152241 -  -4.6  -3.05463   AGGTTTTTTAGCTAA             TTTGAGAA CCC TTCTCCAA             CAATCTTTATTGTGT  50 126
 MF1_RS04740 NONE
 MF1_RS04735 1150311 .. 1150330 -  -3.6  -3.81146   TTGTGCAAGCAATAA            TGGAATTT TTTA AATTTCCA             TGGAAAACAGGATTT  55 155
 MF1_RS04730 NONE
 MF1_RS04725 1147094 .. 1147116 -  -2.7  -5.12707   TTAAATTTCAAAAAA           CAGAACAAT GCATA ATAGTTCCG           CACCGACAAACTTGA  69 397
 MF1_RS04720 1146553 .. 1146564 -  -2.2  -3.20616   ATTATCAAGAGCGAA                CTGA ACAG CCAG                 CAAAACACAAAAAAA  44 175
 MF1_RS04715 1144427 .. 1144440 -  -3.8  -3.54935   TAAATGGCCTTGAAA               CTGC TCTTAC GCAG                GAGACACTGTCATCA  52 97
 MF1_RS04710 1142386 .. 1142410 -  -3.6  -2.96755   AAATCTAAAATATTA          GTGTAGCA TCCCCCCTT TGCCACAC          AGTCAAACATTACAA  47 61
 MF1_RS04705 NONE
 MF1_RS04700 NONE
 MF1_RS04695 NONE
 MF1_RS04690 1138507 .. 1138537 - -10.6  -2.81519   CAGAAAAATAACGCA       CCTTATGAGCTATA TCT TATAGCTCACAACG       TTGAGCGCATAACAG  79 190
 MF1_RS04675 NONE
 MF1_RS04670 1134137 .. 1134150 -  -6.7  -3.62224   ATAGCCCTGCAAGAA               GGTGA ATCC TCACC                CATTAGCATACTGAT  66 381
 MF1_RS04655 1131794 .. 1131811 -  -7.1  -3.09556   AACTGCGGAAGAAAT             TAGAAGA AGTA TCTTCTA              GCGCAAACTACATTG  63 322
 MF1_RS04645 1129816 .. 1129827 -    -3   -3.6053   TGTTTTATAAACGAA                TCAA GTCC TTGA                 CTAAAAATAGACGAT  50 440
        mnmA 1128003 .. 1128017 -  -7.2  -2.95521   CTGATATTAATGACA               TTAGAG CAG CTCTAA               ACGATGCAAATTTTC  62 314
 MF1_RS04625 1125365 .. 1125375 -    -4  -3.73995   CTTGGCATAAAAAAT                 TATG GGG CATA                 GAGCGTTTTCTAAAG  54 383
 MF1_RS04595 1115696 .. 1115706 -  -3.2   -4.2408   GCACAAAAGCAGAAA                 CATG TTA CACG                 CAGATATGCTATCGG  59 475
 MF1_RS04585 1114823 .. 1114834 -    -3  -3.26717   AGCCATATAAGGTAA                TATC GTCA GATA                 GATATATTTAATGCG  47 146
 MF1_RS04580 NONE
 MF1_RS04575 NONE
 MF1_RS04570 NONE
 MF1_RS04565 1109486 .. 1109509 -  -6.2  -4.18018   TTTTTTCACTTAAAA          CACTCATTCAA TGC TTGAATGA-TG          CTGCAAAATTAAAAT  69 263
 MF1_RS04555 1106263 .. 1106279 -  -9.5  -2.92667   CCAAGCTTTAAAGCA              TAAAGGC TTT GCCTTTA              TAAAGATGAAACGGC  73 512
 MF1_RS04545 1104300 .. 1104310 -  -2.6  -2.75844   GTTGCTACTTGAAAT                 TAAT ATT ATTA                 CCTGCCTATGACATA  41 109
        fabI 1103349 .. 1103366 -  -4.9  -3.01309   ATACACACAACCACA             GCACACGT CGA AC-TGTGC             ACAAACAGACTCTAC  52 113
        aroC NONE
        ribB NONE
 MF1_RS04525 1100761 .. 1100781 -  -4.7  -5.26316   TCATTTTATAAAAAA            GAAACTGAT AAA ATCCGTTCC            TATAAACGAGATTAC  80 80
         dxs 1098529 .. 1098546 -  -8.5  -4.17309   GATTACAAACAACAA             TTTCTGC GTCA GCAGAAA              TAATTTGCCCAGCTT  85 162
 MF1_RS04510 1097678 .. 1097704 -  -5.2  -3.75105   TTAAGGTATCAACAA         CTAATTGCTTTT TTC AAAAGCGATAAG         CATCAGCACGCCAAT  61 12
 MF1_RS04505 NONE
 MF1_RS04500 1096436 .. 1096447 -    -3  -5.07652   GTTTTTAAAATAAAA                TGAA CGCC TTCA                 ACAAAAGAATATCGG  71 474
 MF1_RS04485 1092192 .. 1092206 -  -5.7   -2.8001   ATAACTTTGATCATA               TAGCC AAACA GGCTA               TTTTTATGCACTCTA  52 160
        ispH 1091062 .. 1091084 -    -2  -4.59853   GTAACCTGTCAAAAA           TGCCTTCAAA TCA TTTGAATGAA           TATCTGTATAGACCA  59 78
        rnhA 1089651 .. 1089663 -  -4.1   -4.3739   TACTCCGTGATAAAA                GAGAA AGC TTCCC                CCAAAAGGCTATGCC  64 34
 MF1_RS04465 1087974 .. 1087985 -  -4.4   -5.4505   TCGCCTAAGAAAAAA                CTTG TTCT CAAG                 TCCATCATCAATATG  86 265
 MF1_RS04420 1076822 .. 1076835 -  -3.8  -5.17353   ACAGTTATGAAAAAA               GCCA TTGCCT TGGC                AATTCCCAATCCTTT  74 106
 MF1_RS04410 1075080 .. 1075100 -  -2.5  -5.35815   TATACTAAAGAAAAA            TAGGGAAGA TAC TCTACTCTA            TTTACTCTTTTTTTC  72 23
 MF1_RS04405 1074267 .. 1074279 -  -4.1   -4.1899   TGATTTGATTCAAAA                TTGGC TAA ACCAA                AGAAATATTGTTTCA  62 105
 MF1_RS04400 1071255 .. 1071281 -  -9.6  -3.68023   AACGGGTAAAATCAA         TCATGCAGTTTT GAT AAAAATGCATGA         AGTTGGTTTGTTGAA  82 266
 MF1_RS04390 1068979 .. 1069007 -  -2.5  -3.58029   AGTTTATAGAAAAAG        CTTTCGATAAAAT GGC ATTCTTTCTAAAG        ATATTCATCATCGTT  48 139
 MF1_RS04385 NONE
 MF1_RS04380 1067408 .. 1067419 -  -2.2  -4.19506   AGTCGAAGTTGAAAA                GCAA AGAC CTGC                 CGTTAACCCAAAACG  56 367
 MF1_RS04370 1064185 .. 1064213 - -11.9  -3.71378   TATGTTATATTTAAA        GGCTCCATAATTC ATA AAATTATAGAGCC        TTTCAAAAAGAAAAG  91 50
 MF1_RS04360 1062155 .. 1062169 -  -6.4  -3.75506   ACAATGCAGTAAGAA               TGGGTA AGC CACCCA               TAGAGACATTAAAAC  66 313
 MF1_RS04345 1060481 .. 1060503 -  -6.5  -5.43329   AAAAACAAAATAAAA           TATCTATTA ATAAA TAATAGATA           TCTCTGAAATACATC  87 122
 MF1_RS04320 1054317 .. 1054327 -  -3.2  -4.56133   CTTCAACAATTAAAA                 TACG CAT CGCA                 ACATCTGCCAAGGAT  62 40
 MF1_RS04315 NONE
 MF1_RS04310 NONE
 MF1_RS04305 1050933 .. 1050943 -  -2.4  -3.53091   ACCTTTTCTTTTAAA                 GAGC TTC GCAC                 ATCTTGTATATGGGT  47 312
        ccmE NONE
 MF1_RS04295 NONE
 MF1_RS04290 NONE
 MF1_RS04285 NONE
 MF1_RS04280 NONE
 MF1_RS04275 1044031 .. 1044041 -  -2.6  -2.80113   CACTATTTCATGATA                 TTTT AAA AAAA                 ACAGTTGTTACATAT  42 69
 MF1_RS04270 1041040 .. 1041050 -  -2.6  -5.24129   TTTTCTCATAAAAAA                 TTTA TCA TAAA                 ATAACACTTAATGTT  72 33
 MF1_RS04265 1039120 .. 1039149 - -10.1  -5.08169   ATATATCTGAAAAAA       TAAAAGCCCCACT CTAA AATGGGGCTTTTT        AAAAATTTAATCCTG 100 48
 MF1_RS04260 1038066 .. 1038087 -  -5.9  -5.30155   TCAGCAATCAAAAAA           CTTGGTCAA CCTT TTGAACAAG            TTGAAAACCAACTCA  85 188
 MF1_RS04185 1017413 .. 1017426 -  -6.7  -4.12532   TCCCTTATACAGAAA               CACGT AATT ACGTG                ATGCGTGTCATGGAA  71 233
 MF1_RS04175 1014294 .. 1014308 -  -2.9  -3.08813   GGCTACGTCAATATA               TCTTA TTCTT TAAGA               AGACCAGCATGATGC  43 13
        smpB 1013353 .. 1013367 -  -2.1  -5.44119   TCTACTTTAAAAAAA               TTCGG TTTTG CCAAA               GGCACCTTCGAAGAA  76 460
 MF1_RS04160 1012043 .. 1012053 -    -4  -3.54414   ACCCTTAATTAAACA                 TGAA TAT TTCA                 TCCACAAAAGACAAA  52 99
 MF1_RS04155 NONE
 MF1_RS04150 NONE
 MF1_RS04145 NONE
 MF1_RS04140 NONE
        lepB NONE
 MF1_RS04130 NONE
 MF1_RS04125 NONE
        recO NONE
 MF1_RS04115 NONE
        panB 1002626 .. 1002645 -  -5.8  -3.33969   TAACCTACTGCACAA            CCTATAGCT TCC AGC-ATAGG            AATAAAACCGAACAA  61 513
 MF1_RS04095  998749 ..  998770 -  -3.7  -3.82528   AATCTCAAAAACGAA           CAGGTTTGA TAAG CCAAATCTG            AATATAAATGATCGC  55 153
 MF1_RS04085 NONE
 MF1_RS04080  995533 ..  995543 -    -4  -3.10056   ATCATCTACTCAACA                 GTTA CTC TAAC                 CCCTTTTCCCTGTTA  47 98
 MF1_RS04075 NONE
 MF1_RS04070  992763 ..  992792 -  -3.7  -3.58162   TCAGGATTAAATGAA       GAAAATAGTGAAA AATT TTTCATTGTTTTC        CCTAATCGAATCTGA  52 27
        pssA  991907 ..  991945 -  -7.6  -3.09784   TCAGCCTGAATAAAT   TGCTTTCTACTTTGTTTT CCA AAAACAAAGTATCAAGCT   CTACGATTTTGAGAT  66 26
 MF1_RS04015 NONE
        fabD  980944 ..  980956 -  -5.5   -3.4934   CAGATTAAACACCAA                GCACC TTT AGTGC                TGCTTCTATTTCCTC  57 2
        fabG  980025 ..  980037 -  -4.1   -4.7629   GCAGCAATTTAAAAA                CATCC TGT GGATA                TCCCTTACAAAATGA  70 164
 MF1_RS04000  979636 ..  979667 -  -4.5  -3.34652   TCCTCAAAGAATACA      GGCAAAAGCAT TTTTAATTTT ACGCCTTTGCC       TTTTAGGTATCATGC  53 35
        fabF  978205 ..  978220 -  -2.6  -3.51365   TCACATCGGACATAA              TTATCA ACCT CGATAA               CTTTTAGGTACAATA  47 110
        mltG  977051 ..  977061 -    -4  -4.08216   CTACTTTTCTTAAAA                 TTTG CTT CAAA                 ACTTTAATAATACTT  57 57
         gmk  976173 ..  976190 -  -6.3  -3.85698   CCGCTTTTGGACAAA             GACGAAA AATG CTTCGTC              AAAATCTCAAAACAC  66 193
 MF1_RS03950 NONE
 MF1_RS03945  967444 ..  967458 -  -2.1  -3.79747   TTACGGACGACGAAA               TATCC AACTA GGACA               TAAAGAAGCAAAATA  50 18
 MF1_RS03935  962311 ..  962321 -  -2.4  -4.11692   CACCCATTTTCAAAA                 CTGG ACA CCTG                 ATCATAGAGCGAATT  54 287
         ndk  961741 ..  961759 -    -6  -2.63783   AAAATCCCTAAACAG             CCTAAACA GTA TGTTTGGG             AATTTTTTTGCTTTT  55 55
        tatA NONE
 MF1_RS03900 NONE
        tatC NONE
        serS NONE
 MF1_RS03885  951995 ..  952010 -  -6.2  -3.37192   TAAAATCAAACTGAA              TTTGCT ATAA AGCAAA               AGATGAAATGCTTGA  61 63
 MF1_RS03880  950362 ..  950380 -    -6  -3.09908   CTCTCCTAAAACAAG             GCTTTTGG CTG CAAAAAGC             TTCTAAAGGATCTAT  57 352
        yajC  949406 ..  949422 -    -3  -4.25064   AAAGTCAACAAAGAA              CCAATA ATAAA CATTGG              TATATTAATCATATA  57 460
 MF1_RS03870 NONE
 MF1_RS03865  948035 ..  948050 -  -6.2  -3.04398   TGCTGTTTCTAAAAT              GACAAA AAAA TTTGTC               CGTAGCTTTATTGAT  57 67
 MF1_RS03855 NONE
        secG  944013 ..  944027 -  -5.7  -5.86976   CTATAAAATAAAAAA               GGTGA AAAAA TCACC               TTTTTAAGTTATACT  91 53
 MF1_RS03845  942288 ..  942298 -    -4  -4.26386   TTAAAAAGTAAATAA                 TCAA ATT TTGA                 ATTAAACTAATCGAC  59 27
        kdsA NONE
         eno  940028 ..  940040 -  -4.9  -3.14625   TTGAGAAAACAATTA                GAATT CAT AATTC                TGTTTAAATGATATC  52 72
 MF1_RS03830  939469 ..  939481 -    -2  -3.79251   TATCTTATTACCAAA                TTCA CACAC TGAA                GTAACCTGTCACCAT  50 118
 MF1_RS03825  938952 ..  938973 -  -3.1  -3.19642   ATGATTATTTAGGAA           TAACCTTTA TGAA CAAAAGTTA            CAAGCATTATCAATC  47 102
        pdhA NONE
 MF1_RS03815 NONE
 MF1_RS03810  935175 ..  935185 -    -4  -3.54146   AACAGCTCAAATTAA                 CATT GCC AATG                 GATTTTCAATTATTT  52 6
        lpdA NONE
        lipA NONE
 MF1_RS03795  931780 ..  931793 -  -3.1  -4.73912   ACAAAAATTATAAAA               CTCTG CACA CAGAA                ATGCACTTCAAGGAT  67 211
 MF1_RS03775 NONE
 MF1_RS03770 NONE
        trkA NONE
 MF1_RS03760 NONE
        clpP  922769 ..  922779 -    -4  -2.96216   TTTCACCAGGATATA                 TGAA GCC TTCA                 TCTTTTTAAAGGAGG  47 176
        clpX  921467 ..  921479 -  -2.7  -3.81447   CATATCGTATAATAA                TATCA TGC CGATA                CATTTTCTTTATCTT  51 15
         lon  918658 ..  918687 -  -5.1  -2.62184   CCTTTCCCTATATTA       CCAGATGACACAAC TTA ATCATGTCA-CTGG       TCAGTTTATTGAAAA  50 200
 MF1_RS03740  918315 ..  918334 -  -6.4  -5.49729   AAGCATGTAAAAAAA            CCCGCTTA TAAA TAAGCTGG             GTTTTTTAGTGTAGC  87 46
 MF1_RS03730  916002 ..  916021 -  -2.2  -4.58213   TAATTAAGGAGAAAA            TGATAG ATAAGGCG CTATCA             GATGATATCATAGAG  59 61
 MF1_RS03710 NONE
 MF1_RS03700  911655 ..  911666 -  -5.8  -3.35746   ACGAAAGCATACGAA                TCGC CTTT GCGA                 TATCCTCTTTCTCCG  61 113
 MF1_RS03665  905168 ..  905187 - -13.6  -5.18995   AATAGAACATAAAAA            CGCGAGAC CTTT GTCTCGCG             TCACTTTATTCTTTA 100 54
 MF1_RS03655  903404 ..  903418 -    -5  -5.80364   AGCTGAACAAAAAAA               TACTCC GAA GAAGTA               AGCTTACTAACCAAT  91 525
         hfq NONE
        hflX  887751 ..  887765 -  -2.8   -3.4968   ATGAGAAAAATTTAA               GCAAAA ATG TTTAGC               AATAGATTTAAAAAA  47 43
 MF1_RS03600  885770 ..  885780 -  -2.6  -4.18401   CGATACATTTCAAAA                 TTAA ATA TTAA                 ATCTTAGCTCTTTTA  55 126
 MF1_RS03595  884401 ..  884412 -  -4.4  -4.12942   TGAAATTCTTGAAAA                CCAT TATG ATGG                 ACAAAATATCATATC  61 261
 MF1_RS03585 NONE
        nrdR NONE
        ribD NONE
 MF1_RS03570  879777 ..  879791 -  -4.9   -2.6193   TAACCAACGAATTTA               GGCGC ATAGA GCACC               AAATTTTAAAAACTA  50 56
 MF1_RS03565 NONE
        nusB  878645 ..  878659 -  -2.8  -2.73468   CAAGATGGTCAAGTA               TTCGAT TTT ATCGCA               CAAACAACACCAACC  41 177
 MF1_RS03550  877444 ..  877462 -  -3.9   -4.3739   CAGCTTCGCAGAAAA             TACCGTT TTTAT AACAGTA             TACAATAGATAAATT  62 57
        plsX NONE
 MF1_RS03540  875219 ..  875236 -  -2.7   -3.6502   TACGTTTTATTCAAA             TATGGTC AAGC GACTATA              ATTCACCAACGAATA  48 28
 MF1_RS03535 NONE
 MF1_RS03530  873902 ..  873933 -  -5.2  -4.59117   AAATTAATTATAAAA      TACGCGAACATTCT TTAC AAAAAGTTCCCGTA       ATTTTGGTATGTGGT  71 227
        folE  870458 ..  870476 -  -4.6  -3.31802   CAAACTATGAGAATA             TAGATCTT ACG ACGATCTA             CGCACTATCATCATA  51 13
 MF1_RS03505  870154 ..  870171 -  -4.9   -4.0044   AACCATTACTAGAAA             CGTACTA CAAA TAATACG              CTAAAAAAATTCCGC  62 95
 MF1_RS03500 NONE
 MF1_RS03495  868247 ..  868261 -  -3.6  -3.01712   TTTTTCGCTTTAATA               CTCTTT TTC AAAAAG               ATGTGGGCTTTCAAT  47 5
 MF1_RS03475  866112 ..  866127 -  -2.5  -4.32669   AATTGCATAAAAGAA              TCACG AAATGG CGCGA               GTGACGGGGCTCGAA  58 18
 MF1_RS03470 NONE
 MF1_RS03465 NONE
 MF1_RS03460  864165 ..  864175 -  -2.6  -3.87956   AAAACTTATATCAAA                 TTTT AAC AAAA                 ACTTTCATCACATTG  51 101
 MF1_RS03455 NONE
        nuoE  862245 ..  862264 -    -3    -5.093   GGCAAAATAATAAAA            TATTTTTT CAAG AAAAAACA             CCTAGCTACATTCCC  71 50
        nuoF NONE
 MF1_RS03440 NONE
        nuoH NONE
        nuoI  857099 ..  857125 -  -4.5  -3.08464   CGACTACCCATTCAA        CGATGC-CCTTA ACGA TAAGGTGCATCT         ATCAATATATTTCGA  50 7
 MF1_RS03425 NONE
        nuoK  856046 ..  856063 -  -3.5  -3.70741   AAAGCGGAAGAAAGA             CGATCGTA TGA TAC-ATCG             CTGGTCAGCCTTTCA  50 30
        nuoL NONE
 MF1_RS03410 NONE
        nuoN NONE
 MF1_RS03400 NONE
 MF1_RS03395  848493 ..  848505 -  -2.7  -3.55622   CTGAATGCTTGCAAA                CATAA TGA TCATG                TTATTGAAAAATTTA  48 142
 MF1_RS03390 NONE
 MF1_RS03385 NONE
 MF1_RS03380 NONE
 MF1_RS03375 NONE
         mfd  841242 ..  841256 -  -6.4  -3.67737   GAGAAAATTTCTAAA               CAGAAC GCT GCTCTG               CCATTTCTACAAGCT  64 6
 MF1_RS03360  838309 ..  838330 - -10.9  -5.71983   TTAAGTATAAAAAAA           CCGCCACAA ATAT TTATGGCGG            TTTAAATAGAAAAAC 100 84
 MF1_RS03350  833761 ..  833775 -  -2.9  -4.07868   CTAGATTGAGACAAA               GAAAA AATTG TTTTC               CATCTTTAATATTTA  53 84
 MF1_RS03345  831188 ..  831199 -  -4.4  -2.80056   ACCAGTTAGTTAAAG                GAGA CTCT TCTC                 GGTTAATACAATCCA  48 28
 MF1_RS03340  829789 ..  829804 -  -3.3  -3.75437   AATTATCCTACCAAA              TTAGC TTTTTT GCTAA               GGGATAAATCTGTGC  52 104
 MF1_RS03320  825360 ..  825372 -  -7.7  -4.07568   GTCTTGTTTTTAAAA                GCTTG AAG CAAGC                AATCCATTTTCTAGG  76 111
        sufB NONE
        sufC NONE
        sufD NONE
 MF1_RS03300 NONE
 MF1_RS03295  819670 ..  819680 -  -5.4  -4.63527   TGATTATCTGAAAAA                 CTAC TCT GTAG                 CATTTTGTGGAACAT  71 398
 MF1_RS03275  815555 ..  815566 -  -4.4  -5.45726   GAGATGGTAAAAAAA                GCTT ATAG AAGC                 TTCTGGCATAGCAAA  82 426
        lexA  804183 ..  804201 -  -3.1  -4.03611   AAAATACTTAAACAA             TCCCTAT TGAAT AAAGGGA             GCGGGCTAAGCAAAT  55 51
        sfsA NONE
         map NONE
 MF1_RS03185  796609 ..  796627 -  -7.6  -2.82895   TTTGTTATGAATAAT             TAAAGAAA ATT TTTCTTTA             TCCGATAAGGTTTAT  64 37
 MF1_RS03160 NONE
 MF1_RS03155 NONE
 MF1_RS03150 NONE
 MF1_RS03145 NONE
 MF1_RS03140  788378 ..  788395 -  -4.1  -3.79533   TAAACCAGCAAAACA             CCTCTCT TAAC ATAGAGG              ATGAGCTTTTGTTTT  57 62
        ruvX  785515 ..  785529 -  -2.8  -3.61001   TTCTACAAAAATAGA               GCATGT TGC AAATGC               TTATATGGAAAGCCG  48 116
 MF1_RS03115 NONE
 MF1_RS03110 NONE
        plsY NONE
        dprA  779529 ..  779539 -  -2.6  -4.11216   TTGTTATTGTTAAAA                 TATA CCC TATA                 TGGAATTACAAGGTT  55 266
        topA NONE
         rnr  774161 ..  774172 -    -3  -5.37043   ATTTCATAGAAAAAA                CAAA CTCT TTTG                 CCATTCACAATCCTG  74 406
        rpmG  772946 ..  772958 -  -7.7  -5.05505   ATCACAAAGCAAAAA                CCCTT AAA AAGGG                ACTTTAAGAATGAAT  88 97
 MF1_RS03075  772061 ..  772072 -    -3  -5.00884   ATGCTCTCTAAAAAA                GAAA ATAT TTTC                 TTTATTCTGTTCGAG  68 27
 MF1_RS03070  771132 ..  771143 -  -5.8  -3.19038   TTGAAAAGCATTTAA                GCCA TTCG TGGC                 TATGTGTGTTCGAAC  59 271
 MF1_RS03035 NONE
        accC NONE
 MF1_RS03025  763385 ..  763400 -  -2.6  -3.21924   GTATTTTTCACAACA              GAACTT AGCA AAATTC               AAACAATTTCTAGAA  45 168
 MF1_RS02995 NONE
 MF1_RS02990 NONE
        lipB NONE
        parE  755719 ..  755762 - -11.1  -2.78891   ATTGGAATGGAACTA TCAATCCACAACTGC-GCGT TATTG ACGCAGCAGCAGTGGTTTGA GCGAGATATTTTTTT  81 46
        rplM NONE
        rpsI  752451 ..  752464 -  -2.4  -5.62219   AAGACACTAAAAAAA               GCTA ATGAAG TAGC                TGCGTTATATTGAAG  78 296
 MF1_RS02930 NONE
 MF1_RS02925  734702 ..  734716 -  -2.8   -3.6053   GGCGTGAGAAAGTAA               TAGACA GAT TGACTA               TACAAGGGGAGTAAG  48 101
 MF1_RS02885  722723 ..  722735 -  -3.4  -3.08522   GATTTACTCTAAAAG                TTGC CTCAT GCAA                TCTAAAAATATTTTT  45 179
        gltA  721273 ..  721290 -  -9.9  -4.35091   AATATTCACAATAAA             GCTTCAG TAAA CTGAAGC              TTTATTGGGTGGTCA 100 27
 MF1_RS02875 NONE
 MF1_RS02870 NONE
 MF1_RS02865 NONE
 MF1_RS02860  716094 ..  716109 -  -3.2  -3.64703   TTTTGCGGATGCAAA              TGTTGC ACTC GCAGCA               CTTGGGACGGTTTCA  52 404
 MF1_RS02790 NONE
 MF1_RS02785  701188 ..  701206 -  -8.2  -3.59372   TTAATTTAAAGAACA             GCAAAACG GCA CGTTTTAC             AAAAAAACAGGTGGG  68 70
 MF1_RS02770 NONE
 MF1_RS02765  696263 ..  696275 -  -7.7  -3.08464   TTATGAGTTATTGAA                GAGGA TTT TCCTC                ATTGAGTTACGCACA  66 359
 MF1_RS02680 NONE
 MF1_RS02645  669307 ..  669320 -  -4.5  -3.83318   CGCCGAACAAGACAA               GCCCT GAAG AAGGC                TCAAACTTCGGAGAA  57 103
 MF1_RS02605 NONE
 MF1_RS02600  662206 ..  662216 -  -2.6  -4.06687   ATTTCCCACAAAGAA                 TTTT ATA AAAA                 CTATGGATTTAATTA  53 75
 MF1_RS02590  658625 ..  658638 -  -3.7  -3.99324   GCCTATTAGTATAAA               GCGCC TTGA GGCTC                GACCGATTGCAGTTT  59 152
 MF1_RS02575 NONE
 MF1_RS02570  655285 ..  655299 -  -2.8  -3.28712   TTTCCTGTGTTATAA               TGTGCT TTA ATCACA               GGGAGAAGGCAATAT  45 65
 MF1_RS02565 NONE
 MF1_RS02560  653752 ..  653767 -  -7.6  -3.58177   TACAATTTAAAGGAA              GGTGAT TAAT ATCACC               TTGTTTTTTATTTTA  71 33
        purS NONE
        purQ NONE
        purL NONE
 MF1_RS02540 NONE
        grxD NONE
 MF1_RS02530  648134 ..  648154 -    -4  -5.03314   GTTAGGTGTAAAAAA            TCTAGCTT TAGAC AAGCGAGA            AAAAGAATGCTATCT  73 74
         rnd  641134 ..  641154 -  -5.5  -3.37464   TCATCAATTTTAGAA            TATAATGGA ATG TCCTTTATA            AATTAAAGCTGTTTG  57 28
 MF1_RS02500 NONE
 MF1_RS02495  635025 ..  635040 -  -7.6  -2.92777   TTTCATACATGAAAG              CCCAAA GCAA TTTGGG               ATTTTAAATTTTATA  64 66
        recG  628339 ..  628353 -  -7.2  -3.44149   TGAGAACACAGAATA               GAGAAA TAT TTTCTC               ACTTCAAATCCTCTA  66 285
 MF1_RS02455 NONE
 MF1_RS02450  619478 ..  619493 -  -3.3  -2.67747   TTCTCACATGATAAT              TTGCA TCTGTG TGCAA               TAAATGGTTAATTTT  43 138
 MF1_RS02445  616895 ..  616933 - -12.6   -4.2679   CAATTGTTAGCAAAA   CAAACAGTGCGAGGGTTT TTA AAACCGTCGCATTATTTG   TTTAGCGTGTGACGA 100 27
 MF1_RS02435  614714 ..  614736 -  -2.7  -5.62045   ATACAGAAGAAAAAA          TCGCA-CGTG CAGC CACGATGGGA           ATCGATAATCCTCAT  81 357
 MF1_RS02420  610682 ..  610696 -  -4.2  -5.38951   AAGTGATATAAAAAA               GAGCAT GGT ACGCCC               AAGGGGAATCGAACC  79 16
 MF1_RS02415  608860 ..  608889 -  -7.9  -3.14878   TTTGCCAAGGGAAGA       TTCAAAGCTCTCC TTTC GCAGAGCTTTGGA        ATTTAAATTAAATTT  66 41
 MF1_RS02410  607329 ..  607347 -  -3.2  -3.18264   TTTCTCAGCTATGAA             TGTTTCTT GAA AAGAAAGA             GTATTTTTCATTTAT  47 41
        uvrA NONE
 MF1_RS02365 NONE
        glnA  593205 ..  593223 -  -3.9  -4.92363   AAATATCCACAAAAA             TGGAAAT TTTTT ATCTCCA             TTTTTTAATTGAAAA  70 55
 MF1_RS02355  592110 ..  592126 -  -4.4  -3.86897   TTTATCGCGCACAAA              CACCAA AAGAG CTGGTG              CAACGACAATGTGAA  59 450
 MF1_RS02340  587701 ..  587713 -  -2.7  -5.48825   GATGATGGAAAAAAA                CAAAT TGG ATCTG                GAGTCGTTGCCGTCA  78 458
         xth NONE
 MF1_RS02155  559448 ..  559479 -  -5.3  -3.84039   ACATGAACTAAAACA      TAACCACACTC AATTTTCAAA GAGTGTAGTTA       TTCTTTTTTTCAAAT  61 42
 MF1_RS02150 NONE
 MF1_RS02145 NONE
 MF1_RS02140  556615 ..  556636 -  -4.5  -2.85847   AACTTGCACAGTATA           TAAAAAAGG CCTC CCTCTTTCA            CCTGTAAAACCTAAT  48 488
 MF1_RS02110  549063 ..  549077 -  -5.8  -4.06419   TTGGTGCATAAATAA               CTTTTT CTC AAAAAG               AAGTTATGATTCGCA  67 324
 MF1_RS02100  546946 ..  546966 - -14.1   -3.0873   TAAATTAGCGTAAGA            GGTCCTATC CTT GATAGGACC            TTTGCTTTTTTATTT  93 316
 MF1_RS02080 NONE
        secD  539078 ..  539090 -  -3.5  -3.43961   GCATAATATTTACAA                TTTTT TCA AAAAA                ATGAATGAGTTTAAG  48 102
 MF1_RS02070 NONE
 MF1_RS02065  536139 ..  536150 -    -3  -4.05788   TTCTCTGAAAGTAAA                TTGA AGTA TCAA                 ATATTTCCATGTATT  55 205
 MF1_RS02055  533157 ..  533174 -  -5.5  -3.16881   TATTGATGTCATTAA             CGCTGTG TGTG CACAGGG              CATAGAAGCAAAAAT  55 375
 MF1_RS02045  530117 ..  530134 -  -9.9  -4.87665   GTTCATGTACAAAAA             GGGTAAC TTTG GTTACCC              TTTTTGATATGTTTT 100 54
 MF1_RS01990  514770 ..  514785 -    -9  -5.29782   GACATGCACAAAAAA              GCTCAG AATA CTGAGC               TTTTTTGTTTAACAT  95 48
        ssrA NONE
 MF1_RS01970 NONE
 MF1_RS01965 NONE
 MF1_RS01955  507613 ..  507623 -  -3.2  -4.46212   GTTGTTATCAGAAAA                 GATG TTA CACC                 TTACCGATCGTTGTG  62 257
 MF1_RS01950  506497 ..  506507 -    -4  -3.53012   GCTCTTTCTTTTAAA                 TCAA CTT TTGA                 ATTTAATTTGAGATA  52 28
 MF1_RS01945 NONE
 MF1_RS01940 NONE
 MF1_RS01815 NONE
        pncA NONE
 MF1_RS01800  467738 ..  467756 -  -6.2  -3.36059   TAAGGTATAAATAGA             TATTTTAT ACT ATAAAATA             TATTTATTTAAATTT  61 237
 MF1_RS01795  467195 ..  467225 -  -6.2  -3.08197   TCGGAGACAGATACA       GCATCTGCCAAA AGTTTTA TTTAGCAGTTGC       TTGTGGTATATTAGA  57 167
 MF1_RS01785  462122 ..  462133 -    -3  -3.86822   GAAGCCCTTCAGAAA                GTAT GTTG ATAC                 TTTTGGTTGTGATTT  52 516
 MF1_RS01770  459058 ..  459086 - -11.8  -3.08073   ATTATCTCGAACATA        TCACCGGTATTC TCTGT GAAGACCGGTGA        TGAGATAGATCATTT  85 72
 MF1_RS01750  451140 ..  451159 -  -2.9  -4.32067   GATTCCACAAAAGAA            CCAACAA GCATTG TTATTGG             TGTAGAGCTTTGTAA  58 297
 MF1_RS01740  448606 ..  448618 -  -7.7  -2.52623   CTGCGGTTACAATAC                GCCAT AGC ATGGC                TAATATTGGCATATG  63 224
        ubiC NONE
        carA  444330 ..  444342 -  -3.4  -3.57441   AATGCACAAGGAGAA                TTGC AAGGG GCAA                TGGCGTCCGTTGTTT  50 362
        carB  438419 ..  438434 -    -4   -4.8667   GAGAGCGTATAAAAA              GCATGCA TTT TGCA-GC              ACAACAAAAGCTTTA  70 38
 MF1_RS01715  437931 ..  437952 - -13.1  -5.47159   TTTGAATACAAAAAA           CCTTCGTCT GTAA AGACGAAGG            TTTTTAAATAGAATA 100 57
 MF1_RS01710  436450 ..  436461 -  -4.4  -3.69621   ACTCAGAATTTTAAA                GCAA GTTA TTGC                 AAAAGCGCTGGATAC  55 9
 MF1_RS01695  431507 ..  431521 -   -10  -4.39002   AAAGCCTTGAGAAAA               GAGGCA ATA TGCCTC               TTGTAAACCGTCTTA 100 514
 MF1_RS01680  428646 ..  428668 -  -6.3  -3.25102   ATTTTATCCATAATA           TTCACCACA GTTGT TGTGGAGAA           TGACAGTAAGTACTG  61 4
        uvrB  425861 ..  425872 -    -3  -3.49475   GTTATTTGTACAGAA                CTAA GAGT TTAG                 AAATATTTTTGGAGA  48 276
 MF1_RS01670  423523 ..  423533 -  -5.4  -4.05045   AAAGAATTAATGAAA                 TCTC TTC GAGA                 AAAAATTTTGCCTTT  65 215
 MF1_RS01660 NONE
 MF1_RS01655  420683 ..  420697 -  -7.8  -3.53012   CTTGGTCTGGGGAAA               GCGCCT ACA AGGCAC               TGCAATATACTTTGT  68 118
 MF1_RS01635 NONE
 MF1_RS01630 NONE
        pgeF  416379 ..  416389 -    -4  -3.31792   TTAGCACTCTTACAA                 TCAA GTC TTGA                 AAATAATAAGAGTTA  49 162
 MF1_RS01620  414387 ..  414401 -  -2.8  -2.86071   TGTTAGAGGAAGAAC               CAGG TTTATTT CCTG               AACTCTCTAATGTTG  42 337
 MF1_RS01610  412448 ..  412460 -  -3.4  -2.88452   GGGTTAAATAAATAT                CTCA TAAGT TGAG                GCGGGAAAAATTCCC  44 56
 MF1_RS01605  411593 ..  411604 -    -3  -5.07652   GCTTTTAAAATAAAA                TGAA TGCT TTCA                 ACAAAAAACGGGTAG  71 249
        ychF  407832 ..  407846 -  -5.8  -3.99955   AATATATTAATCAAA               TAAGAT GGA ATCTTA               AGGTTATCGTTCTCT  67 514
 MF1_RS01550  399273 ..  399285 -  -2.7  -3.15999   TGCGCATAGAGCTAA                TCCTT CTT AAGAA                AATCAATCAATTGTC  45 98
 MF1_RS01545 NONE
 MF1_RS01540 NONE
 MF1_RS01535  393882 ..  393897 -  -3.3  -5.13741   CTAAGCTAAGAAAAA              GAAGA ATTCTA TCTTC               ATCATTTTTCCAGTT  71 429
 MF1_RS01490  383577 ..  383595 -  -6.8  -4.40199   AAAAATAGGAATAAA             GCTCTTAA ATC TTAAGAAC             AAGGTTACCATTTTA  74 56
        nhaA  381757 ..  381769 -  -3.4  -4.56117   TACAAAAATAAATAA                GGAA AAACA TTCC                AAGATATTTTGTCCC  62 354
 MF1_RS01475  378574 ..  378587 -  -2.3  -4.34402   GCTGCGACATTAAAA               CAGGC AGGT GCGTG                GCAGGTTGATGTTCT  59 419
 MF1_RS01460  376753 ..  376769 -  -2.3  -4.71223   GGACAACAGATAAAA              GCATTTT TGA AAAATGA              TATTCATGTTGAGGG  62 129
        folD NONE
        mscL  359134 ..  359160 -  -5.2  -3.81488   TTTCTTGAAACACAA         GCGAATCATAAT GGC ATTATCATGCGC         ATTATTGCACCGGTT  61 433
 MF1_RS01375 NONE
 MF1_RS01370 NONE
        rpoH  350542 ..  350570 -  -5.4  -4.67608   CAGCCTAATACAAAA       GCAAAGAGCCAAC TTAT GCTAGCTCTTT-C        TCCGTTTTTAAATGT  74 64
 MF1_RS01345  345327 ..  345342 -  -2.6  -3.21924   GTATTTTTCACAACA              GAACTT AGCA AAATTC               AAACAATTTCTAGAA  44 171
 MF1_RS01335  344480 ..  344497 -  -2.7  -3.50929   CAAAGTATATTACAA             CAAAATG TAGC CAATTTG              GAGCTGAAAGATGAA  47 2
 MF1_RS01310  338511 ..  338539 -  -3.1   -4.0942   TATGGATGACACAAA        TGAATTTTAGAGG AAT CCTCTTAATATCA        AATGTATTTCCCTTA  57 38
 MF1_RS01305  337037 ..  337050 -  -4.5  -4.13304   AAATGATTTTTAAAA               GGTCC TTGA AGACC                CTTTGAGAACTCTTT  62 137
 MF1_RS01290  332588 ..  332598 -  -2.4  -3.10091   ATCCGTAAAATCATA                 GGCG GTG CTCC                 TGGAAGCGTTTAGCA  42 10
 MF1_RS01285 NONE
        mutL  325273 ..  325296 -  -2.4  -3.14982   TGAATTAAAAAATAT          TTCTCTTCAC CAAA ACGACGAGAA           CTTATTTTCTGCCAA  44 27
 MF1_RS01265  324785 ..  324797 -  -4.9  -4.71061   AGTCATATGCAAAAA                GATTT AAA AAATC                TTATTGTATTTGATG  74 174
 MF1_RS01220  313643 ..  313667 -    -3  -4.62471   GTCAACCGGCAAAAA         TTACACCTGTT GGTC AACAGA-GTAA          CGATAAAACGTTTAA  62 176
 MF1_RS01130  290469 ..  290483 -  -5.8  -3.38768   TTACATTATTTACAA               CTAAAT ATC ATTTAG               GTTATCTGTTTATTA  61 153
 MF1_RS01110  285348 ..  285368 -  -4.1  -3.59262   CTCCATATTTGGAAA            CATATTG GAGCAGG CAATATG            CAAATTGGCGCCAGA  55 82
 MF1_RS01100  283349 ..  283359 -  -5.4  -3.72893   CATCCTTGGATCAAA                 TGTG GAA CACA                 CTTATAGATCTAAAG  61 359
         ffs  282442 ..  282464 -  -9.9  -2.50252   ATTTCTATAACACAC           GAGTACAGG CTAAT CCTGCACTC           TAGTATAAAAGGATT  75 187
 MF1_RS01090 NONE
 MF1_RS01085 NONE
        recR  279078 ..  279107 -  -2.9  -4.48877   TAAATACTTAGAAAA       CCCGAAG-TCTGTC AAT GACAAAGCTTAGGA       TAATCGTTACAAATA  60 414
        tsaB NONE
        rimI NONE
        miaB NONE
 MF1_RS01055 NONE
        ybeY NONE
 MF1_RS01045 NONE
         lnt NONE
 MF1_RS01035 NONE
 MF1_RS01030 NONE
        trmB  268040 ..  268058 -  -4.5   -6.0427   ATGATATAAAAAAAA            GCGGGTCC AGAC GG-CCCAC             TCCTCATCATAAGAC  93 112
        rimP NONE
        nusA NONE
 MF1_RS01010 NONE
        infB NONE
        rbfA NONE
        truB  261147 ..  261162 -  -2.5  -2.97653   ATTGTGACCACAAAG              GGGCA TTGACT TACCC               GCTATGACTCACTGT  43 34
 MF1_RS00990  260845 ..  260862 -  -6.3  -3.06312   AAATTGTGCACCTAA             CGGTATA AGAG TACACCG              TATGATTGAGCGGCA  56 148
        rpsO  258681 ..  258708 -  -6.4  -5.10029   AGCAAGCTGAAAAAA        TGGGTGG-ATTTT TGT AGAATACCACCCA        CTCATTTTTCTTTTA  84 38
         pnp  256209 ..  256231 -  -6.2  -5.27335   TCCTTCAAAGAAAAA           TGCCATTCCA ATT TGGGCTGGCA           TTTCATTTCATAGTA  84 52
 MF1_RS00970  254708 ..  254727 -  -2.9   -4.0342   TGGAAGGAACAACAA            TTGCCACA AAATA TG-GGCAA            ATCAAAACAGATCAT  55 489
 MF1_RS00955  252071 ..  252085 -  -2.8  -3.06515   TCTCATCTTTAAAAT               GATAGA TAA TCTTTC               GTTAACTGATAGTCC  43 27
 MF1_RS00950 NONE
 MF1_RS00945  249497 ..  249511 -  -2.1  -3.21938   TTAAAAGGGGATGAA               GCTCT CGAAT AAAGC               CCTCCTTGAAAGTGA  44 100
 MF1_RS00940  248557 ..  248574 -  -4.9  -3.49653   ATTATGTTCATATAA             GAAAATG ATTA CATTTCC              TGAGTTGGTCGACGT  55 16
        secA NONE
 MF1_RS00915  241523 ..  241540 -  -2.7  -4.15222   AGGGGGGGTAATAAA             GCAGAAA AACT TTTTTGC              CAATGAAAACTATGG  55 111
        prfA NONE
        prmC  239322 ..  239332 -  -5.4  -2.56596   GCCTTGATGAATCTA                 GGTT TTG AACC                 TCTTTTCCCTCCTGA  50 176
 MF1_RS00880 NONE
 MF1_RS00875 NONE
 MF1_RS00870  232184 ..  232211 -  -2.7  -3.53733   TTTATTCCAGAAATA        TGTTGGTTCAT TTAAAC AGGAACCACCA         AAAGGTCAAACGAAT  48 308
        ugpB  230743 ..  230760 -  -5.6  -5.23016   AAAGAATTGAAAAAA             CTCAAC TGTTTG GTTGAG              TTTTTGATCTTTAAC  82 57
        ugpA  229803 ..  229819 -  -5.1  -3.01791   ATTTTCTTCCTAATA              TTGTACG TGG CGTTCAA              TCCAGCGGAACTGAA  52 3
        ugpE NONE
 MF1_RS00850  227808 ..  227833 -  -6.3  -2.97386   AAAAGGCACGATATA         TCCTAACAA AAACGAAG TTGTTAGGA          GAAAGTGAGAGGTAT  59 78
 MF1_RS00815  217149 ..  217163 -  -3.6   -5.0538   GCTTAGGTTAAAAAA               TATCTA TTT CAGATA               AAAGTTTGTTTTGGG  73 288
 MF1_RS00800 NONE
 MF1_RS00795  212458 ..  212479 -  -8.8  -2.92144   TGTAAAGTATAACGA           CGGTATAG TACGTG CTATACCG            TTTATCGTTTATATT  69 155
        mgtE  208621 ..  208640 -    -3  -4.08666   ATATTTAAAAAAAAT            CAATATGTT GCT AACA-ATTG            CCAAACAGAAGAGAT  57 77
        typA NONE
         ppa  204987 ..  205005 -  -7.4  -4.38116   CGCACAAAAATGAAA             GCCTGCTC AAA AAACAGGC             TTGATTTTTCTGAAA  81 44
 MF1_RS00665  175826 ..  175836 -    -4  -4.30161   GGATAGAAAAGTAAA                 TATC AAG GATA                 GAACTTTTAACGAGT  62 283
 MF1_RS00635  168831 ..  168842 -  -5.8  -4.77173   CGTGGAGAAAACAAA                GCGA ATAA TCGC                 GATAGCTCCACATTA  75 117
 MF1_RS00615  162032 ..  162046 -  -7.2  -3.09908   GTTCTTTAAAAGAAG               GACAAA ATA TTTGTC               TTGAGTCTTAAGAGA  63 283
        rpsU NONE
 MF1_RS00600  158329 ..  158347 -  -4.7  -5.62288   TCAATAAAATAAAAA             TTAAACT TGGTG AGTTTAA             AAATTCACTAACCTT  86 33
        fabA  157029 ..  157046 -  -4.1  -4.55653   AGAATAATAAAATAA             TACCATC TTCT GATGGAA              ATAATTTTTAGTCTT  67 33
        fabB NONE
        fabI  154846 ..  154867 -  -8.9  -4.19307   CAGAGAAAGTACAAA           TATACCATT CTAA AATGGTATA            TAAATTGCTTTTTCT  85 63
        ccmA NONE
        ccmB NONE
 MF1_RS00510 NONE
 MF1_RS00505 NONE
 MF1_RS00500  136831 ..  136842 -  -4.4  -4.08767   TGCATTTGTTTAAAA                GAGA CATC TCTC                 CTTGCTTCCAATTCT  62 306
 MF1_RS00490  134011 ..  134022 -  -4.4  -3.34962   TTGCATAGTCGATAA                TAGC ACGT GCTA                 TTGGCGGGATCGAAA  53 98
 MF1_RS00480  131784 ..  131795 -    -3  -4.11692   TATTTATCTTTAAAA                TCAA TATC TTGA                 TATGGTTGTTAAAAG  57 347
 MF1_RS00465  129074 ..  129095 -  -5.2  -3.43773   TTTTAGACCTAAAGA           CAAGGC-TG GTTAT CACGCCTTG           CGAAAGGTTGCAAGA  57 95
        secB  128504 ..  128524 -  -6.2  -5.13354   GTTATAAAAAATAAA           GGCCACTGA TATT TCA-TGGCC            TTTTTGATAAAAAAA  83 48
        mutS  123073 ..  123089 -  -3.7  -3.63228   TTTATCATAAACGAA              TGGTAAA TCT TTTGCCA              ATTTTTGACTCTTTG  52 189
        aroA NONE
 MF1_RS00425  119088 ..  119116 -  -3.9  -3.20382   GTGGATACGGAGTAA        CTTCCTGCCTT TTTCCTT AATACAGGAAG        AAAAATTAGCGCTTG  49 63
        rpsA  117274 ..  117296 -  -6.9  -6.09196   TGGAAAATAAAAAAA           GGTCGCCAG AGAAA CAAGCGACC           TAAGTTTAATTTATT 100 49
 MF1_RS00415 NONE
        pncB  106899 ..  106911 -  -2.7  -3.02147   TTGAATAGAATTATA                TGTTC GTG AAACA                ATTTTATGAGCAAAG  43 230
 MF1_RS00355 NONE
 MF1_RS00350   95960 ..   95983 -  -6.8  -4.60255   AGAATGGGTGAAAAA          GCAAGA-CAGC GTC ACTGTTCTTGC          TTGCCGCTTAAAGGG  76 224
 MF1_RS00335   92246 ..   92262 -  -4.5  -3.41587   TCCCATAAAACTTAA              TCGTAAT CCC ATTACAA              AATTGCTTCCTGTGC  53 20
 MF1_RS00330 NONE
        truA   90277 ..   90290 -  -5.3  -3.06694   AGGGATGCGCAAAAT               GCATT TTTT AATGC                GGGCAAAGGCATTAG  51 318
        dapD   88668 ..   88681 -  -8.1  -6.01369   TAAATAATAAAAAAA               GGGAG AATT CTCCC                TCATTAATTGCACTT 100 77
 MF1_RS00285   77993 ..   78024 - -11.8  -5.27938   AGCGCTAAACAAAAA      TAAGAAGTGTGAAA AAGT TTTCACACTTCTAA       AGTTAAGATATTGAT 100 67
 MF1_RS00275   76377 ..   76396 -  -3.6  -3.79419   TTTTGCGACAAAACA            GCTTCACAC TTC GTG-GAAAC            GATAACCTACACCGT  55 9
 MF1_RS00270 NONE
 MF1_RS00265   74021 ..   74031 -  -2.6  -5.06414   TGCTGCCAAGAAAAA                 TTTT CAA AAAA                 AAGCAAAAATAACGT  69 62
 MF1_RS00260 NONE
 MF1_RS00255   73161 ..   73184 - -11.2  -3.25864   AGCCAATAAAATAAT          GATAAGAAGA AGTT TCTTCTTATC           TTAGGGATGATCAAC  87 62
        thpR   72059 ..   72072 -  -8.1  -3.74238   TCAAAGAATTCTAAA               GGGTG TTAA CACCC                TCCTTTTATCCTTGA  75 31
        rdgB NONE
 MF1_RS00230 NONE
 MF1_RS00210   64114 ..   64129 -    -4  -2.52464   TTCCCCTGTAAGGGA              GCTAGT GCGC ACTAAC               CGACTCTTTTAAAAG  45 132
 MF1_RS00205   61761 ..   61775 -  -2.8  -3.14564   TTATTTTGTGACCAA               TCACAA TAG TGGTGA               TATTCACGTCACTGT  44 496
 MF1_RS00190   53366 ..   53380 -  -4.2  -3.70853   GCAAGGATTTAAGAA               TAGGGC GGA GCTCTA               TAAGGCGTTACGAGA  54 309
        gyrB NONE
        ubiE NONE
        ubiB NONE
       coaBC   45220 ..   45234 -  -6.4  -3.07816   CGGCTATGTACGCAA               CCTCTC CTT GAGAGA               GTTCATTTAGATTCT  59 208
 MF1_RS00160 NONE
 MF1_RS00155 NONE
 MF1_RS00150   40068 ..   40078 -  -2.6  -3.54424   CGCTAGGCTTGTAAA                 TTTT TGG AAAA                 TTGACCCTGTGGACG  48 2
 MF1_RS00145 NONE
 MF1_RS00140 NONE
        tsaE   33632 ..   33643 -    -3  -5.07652   GCTTTTAAAATAAAA                TGAA TGCT TTCA                 ACAAAAAACGGGTAG  71 289
        addB   29027 ..   29038 -  -4.4  -3.39242   GGAATAGAAAAAGGA                GTCA TGAT TGAC                 CTGCTTTATGAAGAC  53 15
        addA   25478 ..   25502 -  -4.3  -2.89742   TTTAATTTCTATACA          TTGGTATCACG GCA CGTCATATCAA          GTTATAACAAAGATA  48 81
        trxA   25076 ..   25098 -  -6.2  -5.85011   GAAAAATCAAAAAAA           GGGAGAGGCA AAA TTCCTCTCCT           TAAAAAAAATCATTA  93 50
        ihfB   12587 ..   12599 -  -3.4  -2.70354   GTTGTCATAAATTTA                CTCA TTGAT TGAG                CCGATCACGCAAATC  43 14
 MF1_RS00060   12248 ..   12260 -  -6.3  -2.71731   CTTACTTTGTAATGA                TGTGT TGA ACACA                AAGAGGAAAAAATTT  57 75
 MF1_RS00050 NONE
 MF1_RS00045    9572 ..    9593 -  -3.7   -3.9009   AATGTACTCGAGAAA           CTTAACCTT AATA AAGGACAAG            TCCGTTGCCGATTCT  57 264
 MF1_RS00040    7775 ..    7798 - -12.6  -5.54079   CTAAAAACTAAAAAA          CCTTGTTTCT TTTG AGAAACAAGG           TTTTTAAATTGAGCG 100 53
 MF1_RS00035    6727 ..    6738 -  -2.2  -3.73816   AAGATGAGAGTGAAA                GAAC TATG GCTC                 TTGTTAAAAAGGTTA  49 126
