RM11_RS00025 SM00479 RM11_RS00025 RM11_RS00030 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RM11_RS00030 SM00474 3'-5' exonuclease RM11_RS00030 SM00475 5'-3' exonuclease RM11_RS00030 SM00482 DNA polymerase A domain RM11_RS00055 SM00967 RNA 2'-O ribose methyltransferase substrate binding RM11_RS00070 SM00411 bacterial (prokaryotic) histone like domain RM11_RS00085 SM00382 ATPases associated with a variety of cellular activities RM11_RS00145 SM00091 PAS domain RM11_RS00145 SM00387 Histidine kinase-like ATPases RM11_RS00145 SM00388 His Kinase A (phosphoacceptor) domain RM11_RS00150 SM00996 S-adenosyl-L-homocysteine hydrolase RM11_RS00150 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RM11_RS00195 SM00387 Histidine kinase-like ATPases RM11_RS00195 SM00433 TopoisomeraseII RM11_RS00200 SM00062 Bacterial periplasmic substrate-binding proteins RM11_RS00220 SM00382 ATPases associated with a variety of cellular activities RM11_RS00245 SM00729 Elongator protein 3, MiaB family, Radical SAM RM11_RS00285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RM11_RS00285 SM00387 Histidine kinase-like ATPases RM11_RS00285 SM00388 His Kinase A (phosphoacceptor) domain RM11_RS00290 SM00448 cheY-homologous receiver domain RM11_RS00290 SM00862 Transcriptional regulatory protein, C terminal RM11_RS00295 SM00257 Lysin motif RM11_RS00310 SM00271 DnaJ molecular chaperone homology domain RM11_RS00325 SM00838 Elongation factor G C-terminus RM11_RS00375 SM00478 endonuclease III RM11_RS00375 SM00525 RM11_RS00375 RM11_RS00395 SM00873 B3/4 domain RM11_RS00395 SM00874 tRNA synthetase B5 domain RM11_RS00395 SM00896 Ferredoxin-fold anticodon binding domain RM11_RS00405 SM00382 ATPases associated with a variety of cellular activities RM11_RS00430 SM01068 Putative carbohydrate binding domain RM11_RS00435 SM00316 Ribosomal protein S1-like RNA-binding domain RM11_RS00460 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RM11_RS00460 SM00534 ATPase domain of DNA mismatch repair MUTS family RM11_RS00465 SM00919 Malic enzyme, NAD binding domain RM11_RS00465 SM01274 RM11_RS00465 RM11_RS00480 SM00978 RM11_RS00480 RM11_RS00530 SM00382 ATPases associated with a variety of cellular activities RM11_RS00545 SM00382 ATPases associated with a variety of cellular activities RM11_RS00545 SM00760 Bacterial dnaA protein helix-turn-helix domain RM11_RS00550 SM00480 DNA polymerase III beta subunit RM11_RS00595 SM00825 Beta-ketoacyl synthase RM11_RS00610 SM00287 Bacterial SH3 domain homologues RM11_RS00720 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RM11_RS00750 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RM11_RS00750 SM00245 tail specific protease RM11_RS00770 SM01152 RM11_RS00770 RM11_RS00780 SM00838 Elongation factor G C-terminus RM11_RS00785 SM00116 Domain in cystathionine beta-synthase and other proteins. RM11_RS00785 SM00924 MgtE intracellular N domain RM11_RS00810 SM00116 Domain in cystathionine beta-synthase and other proteins. RM11_RS00820 SM00448 cheY-homologous receiver domain RM11_RS00825 SM00155 Phospholipase D. Active site motifs. RM11_RS00830 SM00116 Domain in cystathionine beta-synthase and other proteins. RM11_RS00830 SM01240 RM11_RS00830 RM11_RS00850 SM00382 ATPases associated with a variety of cellular activities RM11_RS00880 SM00382 ATPases associated with a variety of cellular activities RM11_RS00910 SM00937 RM11_RS00910 RM11_RS00920 SM00957 SecA DEAD-like domain RM11_RS00920 SM00958 SecA preprotein cross-linking domain RM11_RS00955 SM00870 RM11_RS00955 RM11_RS00965 SM00382 ATPases associated with a variety of cellular activities RM11_RS00965 SM01086 C-terminal, D2-small domain, of ClpB protein RM11_RS00975 SM00316 Ribosomal protein S1-like RNA-binding domain RM11_RS00975 SM00322 K homology RNA-binding domain RM11_RS00980 SM01387 RM11_RS00980 RM11_RS01010 SM00316 Ribosomal protein S1-like RNA-binding domain RM11_RS01010 SM00322 K homology RNA-binding domain RM11_RS01030 SM00530 Helix-turn-helix XRE-family like proteins RM11_RS01040 SM01091 Transporter associated domain RM11_RS01055 SM00729 Elongator protein 3, MiaB family, Radical SAM RM11_RS01075 SM00493 RM11_RS01075 RM11_RS01085 SM00382 ATPases associated with a variety of cellular activities RM11_RS01150 SM00382 ATPases associated with a variety of cellular activities RM11_RS01170 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RM11_RS01170 SM01232 RM11_RS01170 RM11_RS01180 SM00474 3'-5' exonuclease RM11_RS01220 SM00363 S4 RNA-binding domain RM11_RS01275 SM00853 MutL C terminal dimerisation domain RM11_RS01275 SM01340 RM11_RS01275 RM11_RS01340 SM00382 ATPases associated with a variety of cellular activities RM11_RS01385 SM00788 Adenylosuccinate synthetase RM11_RS01400 SM00363 S4 RNA-binding domain RM11_RS01410 SM00382 ATPases associated with a variety of cellular activities RM11_RS01410 SM00843 RM11_RS01410 RM11_RS01420 SM00387 Histidine kinase-like ATPases RM11_RS01420 SM00388 His Kinase A (phosphoacceptor) domain RM11_RS01440 SM01230 RM11_RS01440 RM11_RS01595 SM00028 Tetratricopeptide repeats RM11_RS01695 SM01400 RM11_RS01695 RM11_RS01730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RM11_RS01730 SM00387 Histidine kinase-like ATPases RM11_RS01730 SM00388 His Kinase A (phosphoacceptor) domain RM11_RS01735 SM00448 cheY-homologous receiver domain RM11_RS01735 SM00862 Transcriptional regulatory protein, C terminal RM11_RS01740 SM00849 Metallo-beta-lactamase superfamily RM11_RS01770 SM01209 RM11_RS01770 RM11_RS01770 SM01210 RM11_RS01770 RM11_RS01785 SM00271 DnaJ molecular chaperone homology domain RM11_RS01810 SM00861 Transketolase, pyrimidine binding domain RM11_RS01870 SM00052 Putative diguanylate phosphodiesterase RM11_RS01870 SM00267 diguanylate cyclase RM11_RS01915 SM00478 endonuclease III RM11_RS01915 SM00525 RM11_RS01915 RM11_RS02010 SM00448 cheY-homologous receiver domain RM11_RS02010 SM00862 Transcriptional regulatory protein, C terminal RM11_RS02015 SM00387 Histidine kinase-like ATPases RM11_RS02040 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RM11_RS02045 SM00448 cheY-homologous receiver domain RM11_RS02045 SM00862 Transcriptional regulatory protein, C terminal RM11_RS02050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RM11_RS02050 SM00387 Histidine kinase-like ATPases RM11_RS02050 SM00388 His Kinase A (phosphoacceptor) domain RM11_RS02070 SM00387 Histidine kinase-like ATPases RM11_RS02070 SM00388 His Kinase A (phosphoacceptor) domain RM11_RS02080 SM00986 Uracil DNA glycosylase superfamily RM11_RS02080 SM00987 UreE urease accessory protein, C-terminal domain RM11_RS02115 SM00382 ATPases associated with a variety of cellular activities RM11_RS02150 SM01130 RM11_RS02150 RM11_RS02160 SM00986 Uracil DNA glycosylase superfamily RM11_RS02160 SM00987 UreE urease accessory protein, C-terminal domain RM11_RS02165 SM01409 RM11_RS02165 RM11_RS02170 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RM11_RS02170 SM00954 Region found in RelA / SpoT proteins RM11_RS02195 SM00358 Double-stranded RNA binding motif RM11_RS02195 SM00535 Ribonuclease III family RM11_RS02240 SM00840 RM11_RS02240 RM11_RS02250 SM00382 ATPases associated with a variety of cellular activities RM11_RS02280 SM00382 ATPases associated with a variety of cellular activities RM11_RS02285 SM00382 ATPases associated with a variety of cellular activities RM11_RS02310 SM00014 Acid phosphatase homologues RM11_RS02315 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RM11_RS02320 SM00822 RM11_RS02320 RM11_RS02325 SM00823 Phosphopantetheine attachment site RM11_RS02330 SM00825 Beta-ketoacyl synthase RM11_RS02340 SM00072 Guanylate kinase homologues. RM11_RS02345 SM00650 Ribosomal RNA adenine dimethylases RM11_RS02400 SM00869 Autotransporter beta-domain RM11_RS02410 SM00562 RM11_RS02410 RM11_RS02420 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RM11_RS02420 SM00465 GIY-YIG type nucleases (URI domain) RM11_RS02460 SM00257 Lysin motif RM11_RS02505 SM01192 RM11_RS02505 RM11_RS02505 SM01193 RM11_RS02505 RM11_RS02525 SM00861 Transketolase, pyrimidine binding domain RM11_RS02540 SM00729 Elongator protein 3, MiaB family, Radical SAM RM11_RS02565 SM00091 PAS domain RM11_RS02565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RM11_RS02565 SM00387 Histidine kinase-like ATPases RM11_RS02565 SM00388 His Kinase A (phosphoacceptor) domain RM11_RS02570 SM00382 ATPases associated with a variety of cellular activities RM11_RS02570 SM00448 cheY-homologous receiver domain RM11_RS02590 SM00382 ATPases associated with a variety of cellular activities RM11_RS02590 SM00994 ClpX C4-type zinc finger RM11_RS02590 SM01086 C-terminal, D2-small domain, of ClpB protein RM11_RS02595 SM00382 ATPases associated with a variety of cellular activities RM11_RS02595 SM00464 Found in ATP-dependent protease La (LON) RM11_RS02600 SM00411 bacterial (prokaryotic) histone like domain RM11_RS02655 SM00448 cheY-homologous receiver domain RM11_RS02690 SM00829 Enoylreductase RM11_RS02695 SM00825 Beta-ketoacyl synthase RM11_RS02710 SM00919 Malic enzyme, NAD binding domain RM11_RS02710 SM01274 RM11_RS02710 RM11_RS02740 SM00859 Semialdehyde dehydrogenase, NAD binding domain RM11_RS02795 SM00411 bacterial (prokaryotic) histone like domain RM11_RS02800 SM00422 helix_turn_helix, mercury resistance RM11_RS02805 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RM11_RS02810 SM01234 RM11_RS02810 RM11_RS02890 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RM11_RS02895 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RM11_RS02940 SM00849 Metallo-beta-lactamase superfamily RM11_RS02955 SM00382 ATPases associated with a variety of cellular activities RM11_RS02965 SM00487 DEAD-like helicases superfamily RM11_RS02965 SM00490 helicase superfamily c-terminal domain RM11_RS02965 SM00982 RM11_RS02965 RM11_RS02965 SM01058 CarD-like/TRCF domain RM11_RS02985 SM00646 RM11_RS02985 RM11_RS02995 SM00937 RM11_RS02995 RM11_RS03025 SM00382 ATPases associated with a variety of cellular activities RM11_RS03065 SM00849 Metallo-beta-lactamase superfamily RM11_RS03090 SM00936 Penicillin-binding protein 5, C-terminal domain RM11_RS03120 SM00363 S4 RNA-binding domain RM11_RS03120 SM01390 RM11_RS03120 RM11_RS03165 SM00357 Cold shock protein domain RM11_RS03185 SM00382 ATPases associated with a variety of cellular activities RM11_RS03190 SM00382 ATPases associated with a variety of cellular activities RM11_RS03205 SM00732 Likely ribonuclease with RNase H fold. RM11_RS03225 SM01207 RM11_RS03225 RM11_RS03240 SM00316 Ribosomal protein S1-like RNA-binding domain RM11_RS03240 SM00955 RM11_RS03240 RM11_RS03250 SM00318 Staphylococcal nuclease homologues RM11_RS03255 SM00986 Uracil DNA glycosylase superfamily RM11_RS03255 SM00987 UreE urease accessory protein, C-terminal domain RM11_RS03260 SM00344 helix_turn_helix ASNC type RM11_RS03290 SM00878 Biotin carboxylase C-terminal domain RM11_RS03325 SM00387 Histidine kinase-like ATPases RM11_RS03325 SM00433 TopoisomeraseII RM11_RS03345 SM00448 cheY-homologous receiver domain RM11_RS03355 SM00869 Autotransporter beta-domain RM11_RS03390 SM00487 DEAD-like helicases superfamily RM11_RS03390 SM00490 helicase superfamily c-terminal domain RM11_RS03440 SM00062 Bacterial periplasmic substrate-binding proteins RM11_RS03455 SM00382 ATPases associated with a variety of cellular activities RM11_RS03535 SM00382 ATPases associated with a variety of cellular activities RM11_RS03535 SM01086 C-terminal, D2-small domain, of ClpB protein RM11_RS03565 SM00663 RNA polymerase I subunit A N-terminus RM11_RS03590 SM00649 Ribosomal protein L11/L12 RM11_RS03595 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RM11_RS03595 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RM11_RS03625 SM00967 RNA 2'-O ribose methyltransferase substrate binding RM11_RS03645 SM00845 GatB domain RM11_RS03710 SM00091 PAS domain RM11_RS03710 SM00387 Histidine kinase-like ATPases RM11_RS03710 SM00388 His Kinase A (phosphoacceptor) domain RM11_RS03710 SM00448 cheY-homologous receiver domain RM11_RS03725 SM00903 Flavin reductase like domain RM11_RS03735 SM00998 Adenylosuccinate lyase C-terminus RM11_RS03755 SM01211 RM11_RS03755 RM11_RS03780 SM00434 DNA Topoisomerase IV RM11_RS03790 SM00341 Helicase and RNase D C-terminal RM11_RS03790 SM00474 3'-5' exonuclease RM11_RS03815 SM00481 DNA polymerase alpha chain like domain RM11_RS03820 SM00487 DEAD-like helicases superfamily RM11_RS03820 SM00490 helicase superfamily c-terminal domain RM11_RS03850 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RM11_RS03855 SM00836 DALR anticodon binding domain RM11_RS03855 SM01016 Arginyl tRNA synthetase N terminal dom RM11_RS03895 SM01329 RM11_RS03895 RM11_RS03935 SM00434 DNA Topoisomerase IV RM11_RS03950 SM00938 Nitrogen regulatory protein P-II RM11_RS03955 SM01230 RM11_RS03955 RM11_RS03975 SM00382 ATPases associated with a variety of cellular activities RM11_RS03980 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RM11_RS03985 SM00382 ATPases associated with a variety of cellular activities RM11_RS03990 SM00382 ATPases associated with a variety of cellular activities RM11_RS03995 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RM11_RS04005 SM00662 RNA polymerases D RM11_RS04070 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RM11_RS04075 SM01374 RM11_RS04075 RM11_RS04095 SM00322 K homology RNA-binding domain RM11_RS04110 SM01382 RM11_RS04110 RM11_RS04110 SM01383 RM11_RS04110 RM11_RS04130 SM01403 RM11_RS04130 RM11_RS04140 SM00838 Elongation factor G C-terminus RM11_RS04140 SM00889 Elongation factor G, domain IV RM11_RS04160 SM00062 Bacterial periplasmic substrate-binding proteins RM11_RS04175 SM00382 ATPases associated with a variety of cellular activities RM11_RS04260 SM01091 Transporter associated domain RM11_RS04300 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RM11_RS04305 SM00244 prohibitin homologues RM11_RS04310 SM00244 prohibitin homologues RM11_RS04375 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RM11_RS04375 SM00292 breast cancer carboxy-terminal domain RM11_RS04375 SM00532 Ligase N family RM11_RS04395 SM00864 Tubulin/FtsZ family, GTPase domain RM11_RS04395 SM00865 Tubulin/FtsZ family, C-terminal domain RM11_RS04400 SM00842 Cell division protein FtsA RM11_RS04490 SM00382 ATPases associated with a variety of cellular activities RM11_RS04510 SM00530 Helix-turn-helix XRE-family like proteins RM11_RS04560 SM00400 zinc finger RM11_RS04560 SM00493 RM11_RS04560 RM11_RS04585 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RM11_RS04595 SM00851 MGS-like domain RM11_RS04595 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RM11_RS04600 SM00357 Cold shock protein domain RM11_RS04635 SM00287 Bacterial SH3 domain homologues RM11_RS04640 SM00487 DEAD-like helicases superfamily RM11_RS04640 SM00490 helicase superfamily c-terminal domain RM11_RS04710 SM00448 cheY-homologous receiver domain RM11_RS04710 SM00862 Transcriptional regulatory protein, C terminal RM11_RS04745 SM00382 ATPases associated with a variety of cellular activities RM11_RS04750 SM00382 ATPases associated with a variety of cellular activities RM11_RS04800 SM00893 Electron transfer flavoprotein domain RM11_RS04805 SM00893 Electron transfer flavoprotein domain RM11_RS04870 SM00855 Phosphoglycerate mutase family RM11_RS04895 SM00644 RM11_RS04895 RM11_RS04900 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RM11_RS04980 SM00450 Rhodanese Homology Domain RM11_RS04995 SM01005 Alanine racemase, C-terminal domain RM11_RS05020 SM00464 Found in ATP-dependent protease La (LON) RM11_RS05035 SM00859 Semialdehyde dehydrogenase, NAD binding domain RM11_RS05040 SM00287 Bacterial SH3 domain homologues RM11_RS05090 SM00869 Autotransporter beta-domain RM11_RS05095 SM00869 Autotransporter beta-domain RM11_RS05115 SM00382 ATPases associated with a variety of cellular activities RM11_RS05130 SM00869 Autotransporter beta-domain RM11_RS05145 SM00869 Autotransporter beta-domain RM11_RS05170 SM00904 Riboflavin kinase RM11_RS05190 SM00318 Staphylococcal nuclease homologues RM11_RS05205 SM00382 ATPases associated with a variety of cellular activities RM11_RS05240 SM00382 ATPases associated with a variety of cellular activities RM11_RS05305 SM00932 Scaffold protein Nfu/NifU N terminal RM11_RS05315 SM00883 Chaperonin 10 Kd subunit RM11_RS05340 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RM11_RS05400 SM00387 Histidine kinase-like ATPases RM11_RS05420 SM00448 cheY-homologous receiver domain RM11_RS05425 SM00911 HWE histidine kinase RM11_RS05535 SM00382 ATPases associated with a variety of cellular activities RM11_RS05535 SM01086 C-terminal, D2-small domain, of ClpB protein RM11_RS05605 SM01001 AIR carboxylase RM11_RS05620 SM00028 Tetratricopeptide repeats RM11_RS05695 SM00493 RM11_RS05695 RM11_RS05830 SM00382 ATPases associated with a variety of cellular activities RM11_RS05900 SM00382 ATPases associated with a variety of cellular activities RM11_RS05905 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RM11_RS05940 SM00671 Sel1-like repeats. RM11_RS05945 SM00841 Elongation factor P, C-terminal RM11_RS05945 SM01185 RM11_RS05945 RM11_RS05955 SM00382 ATPases associated with a variety of cellular activities RM11_RS05975 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RM11_RS05980 SM00861 Transketolase, pyrimidine binding domain RM11_RS06015 SM00382 ATPases associated with a variety of cellular activities RM11_RS06025 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain RM11_RS06050 SM01058 CarD-like/TRCF domain RM11_RS06090 SM00382 ATPases associated with a variety of cellular activities RM11_RS06110 SM00487 DEAD-like helicases superfamily RM11_RS06110 SM00490 helicase superfamily c-terminal domain RM11_RS06150 SM00382 ATPases associated with a variety of cellular activities RM11_RS06170 SM00382 ATPases associated with a variety of cellular activities RM11_RS06195 SM00382 ATPases associated with a variety of cellular activities RM11_RS06195 SM00843 RM11_RS06195 RM11_RS06205 SM00528 Domain in histone-like proteins of HNS family RM11_RS06385 SM00271 DnaJ molecular chaperone homology domain RM11_RS06395 SM00327 von Willebrand factor (vWF) type A domain RM11_RS06410 SM00798 AICARFT/IMPCHase bienzyme RM11_RS06410 SM00851 MGS-like domain RM11_RS06440 SM00830 Chorismate mutase type II RM11_RS06445 SM00382 ATPases associated with a variety of cellular activities RM11_RS06445 SM00962 SRP54-type protein, GTPase domain RM11_RS06445 SM00963 SRP54-type protein, helical bundle domain RM11_RS06500 SM00448 cheY-homologous receiver domain RM11_RS06500 SM00862 Transcriptional regulatory protein, C terminal RM11_RS06700 SM00881 CoA binding domain RM11_RS06730 SM00729 Elongator protein 3, MiaB family, Radical SAM RM11_RS06735 SM00382 ATPases associated with a variety of cellular activities RM11_RS06735 SM00962 SRP54-type protein, GTPase domain RM11_RS06735 SM00963 SRP54-type protein, helical bundle domain RM11_RS06750 SM00470 ParB-like nuclease domain RM11_RS06765 SM01228 RM11_RS06765 RM11_RS06775 SM00357 Cold shock protein domain RM11_RS06775 SM00382 ATPases associated with a variety of cellular activities RM11_RS06775 SM00959 Rho termination factor, N-terminal domain