RM11_RS02010 f77574d58e2d5b00df823db16790afa7 222 SUPERFAMILY SSF52172 1 118 4.7E-37 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS02010 f77574d58e2d5b00df823db16790afa7 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 215 4.1E-23 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS02010 f77574d58e2d5b00df823db16790afa7 222 SMART SM00862 145 216 5.2E-25 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS02010 f77574d58e2d5b00df823db16790afa7 222 Pfam PF00072 Response regulator receiver domain 3 112 2.5E-23 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS02010 f77574d58e2d5b00df823db16790afa7 222 SUPERFAMILY SSF46894 118 216 6.52E-28 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RM11_RS02010 f77574d58e2d5b00df823db16790afa7 222 Gene3D G3DSA:1.10.10.10 122 217 6.5E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS02010 f77574d58e2d5b00df823db16790afa7 222 PANTHER PTHR26402 1 217 1.9E-92 T 22-04-2016 RM11_RS02010 f77574d58e2d5b00df823db16790afa7 222 SMART SM00448 1 112 3.8E-36 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS02010 f77574d58e2d5b00df823db16790afa7 222 Gene3D G3DSA:3.40.50.2300 1 120 1.2E-33 T 22-04-2016 RM11_RS02010 f77574d58e2d5b00df823db16790afa7 222 PANTHER PTHR26402:SF316 1 217 1.9E-92 T 22-04-2016 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 Pfam PF01612 3'-5' exonuclease 3 171 3.9E-34 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 PANTHER PTHR12124:SF42 1 260 1.9E-54 T 22-04-2016 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 SUPERFAMILY SSF47819 190 296 7.85E-24 T 22-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 SUPERFAMILY SSF53098 3 205 3.41E-64 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 SMART SM00341 209 287 8.1E-4 T 22-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 Gene3D G3DSA:3.30.420.10 3 179 2.3E-16 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 SMART SM00474 2 171 2.1E-36 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 SUPERFAMILY SSF47819 305 370 1.68E-13 T 22-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 Hamap MF_01899 Ribonuclease D [rnd]. 2 367 42.211 T 22-04-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 PANTHER PTHR12124 1 260 1.9E-54 T 22-04-2016 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 TIGRFAM TIGR01388 rnd: ribonuclease D 4 367 4.6E-123 T 22-04-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 RM11_RS03790 052adb71116cd243c1b70f780b8e358d 384 Pfam PF00570 HRDC domain 212 266 1.3E-11 T 22-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 ProSitePatterns PS01199 Ribosomal protein L1 signature. 120 139 - T 22-04-2016 IPR023673 Ribosomal protein L1, conserved site RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 5.1E-52 T 22-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 Gene3D G3DSA:3.40.50.790 69 159 5.9E-40 T 22-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 PANTHER PTHR23105:SF5 19 226 4.6E-80 T 22-04-2016 RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 Gene3D G3DSA:3.30.190.20 161 226 8.8E-45 T 22-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 Gene3D G3DSA:3.30.190.20 18 68 8.8E-45 T 22-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.386 T 22-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 7.3E-98 T 22-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 PANTHER PTHR23105 19 226 4.6E-80 T 22-04-2016 RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 PIRSF PIRSF002155 1 227 3.6E-75 T 22-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 RM11_RS03585 93b6ab575ca85e9b373f8c90e5340f64 232 SUPERFAMILY SSF56808 6 226 5.49E-81 T 22-04-2016 IPR023674 Ribosomal protein L1-like RM11_RS03870 ab915738a5a3e38ae200ffb1e4b32697 368 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 52 363 1.2E-122 T 22-04-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 RM11_RS03870 ab915738a5a3e38ae200ffb1e4b32697 368 PIRSF PIRSF006468 7 367 1.9E-136 T 22-04-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 RM11_RS03870 ab915738a5a3e38ae200ffb1e4b32697 368 PANTHER PTHR11825 12 364 9.8E-137 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RM11_RS03870 ab915738a5a3e38ae200ffb1e4b32697 368 Pfam PF01063 Amino-transferase class IV 78 320 7.5E-34 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RM11_RS03870 ab915738a5a3e38ae200ffb1e4b32697 368 Gene3D G3DSA:3.30.470.10 22 182 9.6E-70 T 22-04-2016 RM11_RS03870 ab915738a5a3e38ae200ffb1e4b32697 368 PANTHER PTHR11825:SF2 12 364 9.8E-137 T 22-04-2016 RM11_RS03870 ab915738a5a3e38ae200ffb1e4b32697 368 SUPERFAMILY SSF56752 4 362 1.96E-111 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RM11_RS03870 ab915738a5a3e38ae200ffb1e4b32697 368 Gene3D G3DSA:3.20.10.10 183 351 6.3E-61 T 22-04-2016 RM11_RS04270 1870efb0b8cf1663582265eaabdc2a8a 467 PANTHER PTHR11785:SF336 4 462 3.7E-175 T 22-04-2016 RM11_RS04270 1870efb0b8cf1663582265eaabdc2a8a 467 Pfam PF00324 Amino acid permease 23 459 7.8E-99 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 RM11_RS04270 1870efb0b8cf1663582265eaabdc2a8a 467 ProSitePatterns PS00218 Amino acid permeases signature. 48 78 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RM11_RS04270 1870efb0b8cf1663582265eaabdc2a8a 467 PIRSF PIRSF006060 4 466 4.9E-71 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RM11_RS04270 1870efb0b8cf1663582265eaabdc2a8a 467 PANTHER PTHR11785 4 462 3.7E-175 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RM11_RS05640 77a1e260d912577db8d5a5f7c5a56e9a 61 Gene3D G3DSA:3.40.50.10420 9 60 4.4E-9 T 22-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RM11_RS05640 77a1e260d912577db8d5a5f7c5a56e9a 61 SUPERFAMILY SSF100950 9 60 9.91E-9 T 22-04-2016 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Pfam PF03129 Anticodon binding domain 556 645 2.2E-19 T 22-04-2016 IPR004154 Anticodon-binding RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 PRINTS PR01047 Threonyl-tRNA synthetase signature 371 394 7.1E-54 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 PRINTS PR01047 Threonyl-tRNA synthetase signature 522 535 7.1E-54 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 PRINTS PR01047 Threonyl-tRNA synthetase signature 479 507 7.1E-54 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 PRINTS PR01047 Threonyl-tRNA synthetase signature 549 561 7.1E-54 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 PRINTS PR01047 Threonyl-tRNA synthetase signature 338 366 7.1E-54 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 SUPERFAMILY SSF52954 545 646 6.8E-29 T 22-04-2016 IPR004154 Anticodon-binding RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 SUPERFAMILY SSF55681 246 541 1.38E-89 T 22-04-2016 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Gene3D G3DSA:3.30.980.10 190 226 2.1E-40 T 22-04-2016 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Gene3D G3DSA:3.30.980.10 70 132 2.1E-40 T 22-04-2016 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Gene3D G3DSA:3.30.930.10 245 545 1.1E-114 T 22-04-2016 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 335 543 1.0E-39 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 SUPERFAMILY SSF55186 66 244 7.06E-63 T 22-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 SUPERFAMILY SSF81271 6 64 8.83E-13 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 69 649 32.88 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Gene3D G3DSA:3.40.50.800 546 646 4.8E-30 T 22-04-2016 IPR004154 Anticodon-binding RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 SMART SM00863 172 222 1.5E-23 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Gene3D G3DSA:3.30.54.20 133 189 6.6E-23 T 22-04-2016 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Pfam PF02824 TGS domain 9 64 4.3E-5 T 22-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 75 646 1.6E-206 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 173 222 5.2E-13 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 PANTHER PTHR11451 5 646 0.0 T 22-04-2016 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 PANTHER PTHR11451:SF31 5 646 0.0 T 22-04-2016 RM11_RS02805 4b8c0c6d2b009df8db34fd4c7404b160 658 Gene3D G3DSA:3.10.20.30 5 67 1.8E-18 T 22-04-2016 IPR012675 Beta-grasp domain RM11_RS04160 f044d10d6d9f9ca27609103b6f034f43 303 Gene3D G3DSA:3.40.190.10 123 226 8.7E-27 T 22-04-2016 RM11_RS04160 f044d10d6d9f9ca27609103b6f034f43 303 PANTHER PTHR30085 1 292 6.5E-77 T 22-04-2016 RM11_RS04160 f044d10d6d9f9ca27609103b6f034f43 303 Gene3D G3DSA:3.40.190.10 34 122 9.2E-17 T 22-04-2016 RM11_RS04160 f044d10d6d9f9ca27609103b6f034f43 303 Gene3D G3DSA:3.40.190.10 227 267 9.2E-17 T 22-04-2016 RM11_RS04160 f044d10d6d9f9ca27609103b6f034f43 303 SMART SM00062 37 267 3.4E-42 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RM11_RS04160 f044d10d6d9f9ca27609103b6f034f43 303 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 265 8.6E-41 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RM11_RS04160 f044d10d6d9f9ca27609103b6f034f43 303 PANTHER PTHR30085:SF2 1 292 6.5E-77 T 22-04-2016 RM11_RS04160 f044d10d6d9f9ca27609103b6f034f43 303 SUPERFAMILY SSF53850 1 267 4.52E-53 T 22-04-2016 RM11_RS01905 6f6ae19293d7f27258d1eef97407b381 231 Gene3D G3DSA:3.40.50.1000 87 224 3.5E-38 T 22-04-2016 IPR023214 HAD-like domain RM11_RS01905 6f6ae19293d7f27258d1eef97407b381 231 Gene3D G3DSA:3.40.50.1000 2 19 3.5E-38 T 22-04-2016 IPR023214 HAD-like domain RM11_RS01905 6f6ae19293d7f27258d1eef97407b381 231 Gene3D G3DSA:1.10.150.240 20 85 6.1E-25 T 22-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RM11_RS01905 6f6ae19293d7f27258d1eef97407b381 231 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 187 2.2E-29 T 22-04-2016 IPR023214 HAD-like domain RM11_RS01905 6f6ae19293d7f27258d1eef97407b381 231 PANTHER PTHR18901 3 194 2.9E-47 T 22-04-2016 RM11_RS01905 6f6ae19293d7f27258d1eef97407b381 231 PANTHER PTHR18901:SF9 3 194 2.9E-47 T 22-04-2016 RM11_RS01905 6f6ae19293d7f27258d1eef97407b381 231 SUPERFAMILY SSF56784 4 222 3.08E-48 T 22-04-2016 IPR023214 HAD-like domain RM11_RS01905 6f6ae19293d7f27258d1eef97407b381 231 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 7 187 3.8E-15 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RM11_RS02520 8035249e2116288357d03802af64a022 346 Pfam PF00676 Dehydrogenase E1 component 40 337 1.3E-104 T 22-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RM11_RS02520 8035249e2116288357d03802af64a022 346 SUPERFAMILY SSF52518 24 345 2.18E-105 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS02520 8035249e2116288357d03802af64a022 346 Gene3D G3DSA:3.40.50.970 16 345 1.2E-134 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS02520 8035249e2116288357d03802af64a022 346 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 31 345 6.1E-153 T 22-04-2016 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 Gene3D G3DSA:2.170.220.10 116 228 1.8E-43 T 22-04-2016 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 Pfam PF09334 tRNA synthetases class I (M) 5 363 1.5E-109 T 22-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 SUPERFAMILY SSF47323 352 507 5.61E-36 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 508 46.645 T 22-04-2016 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 PANTHER PTHR11946 2 508 2.0E-233 T 22-04-2016 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 Gene3D G3DSA:1.10.730.10 342 507 4.2E-49 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 PRINTS PR01041 Methionyl-tRNA synthetase signature 227 238 3.38E-31 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 PRINTS PR01041 Methionyl-tRNA synthetase signature 351 362 3.38E-31 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 3.38E-31 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 PRINTS PR01041 Methionyl-tRNA synthetase signature 259 274 3.38E-31 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 3.38E-31 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 3.38E-31 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 SUPERFAMILY SSF52374 2 350 8.85E-107 T 22-04-2016 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 PANTHER PTHR11946:SF1 2 508 2.0E-233 T 22-04-2016 RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 Gene3D G3DSA:3.40.50.620 229 337 5.4E-76 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 Gene3D G3DSA:3.40.50.620 2 113 5.4E-76 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS03075 ae980fb45d26d560bec3c585386de1a7 519 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 5 505 2.5E-155 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RM11_RS03745 16ce3c91c543ce27c5ad1f7b5f798c84 254 Gene3D G3DSA:3.30.200.20 7 93 9.5E-37 T 22-04-2016 RM11_RS03745 16ce3c91c543ce27c5ad1f7b5f798c84 254 Pfam PF01259 SAICAR synthetase 6 235 1.4E-61 T 22-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RM11_RS03745 16ce3c91c543ce27c5ad1f7b5f798c84 254 Gene3D G3DSA:3.30.470.20 94 223 6.6E-50 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS03745 16ce3c91c543ce27c5ad1f7b5f798c84 254 PANTHER PTHR11609 3 240 2.7E-117 T 22-04-2016 RM11_RS03745 16ce3c91c543ce27c5ad1f7b5f798c84 254 SUPERFAMILY SSF56104 5 236 7.52E-77 T 22-04-2016 RM11_RS03745 16ce3c91c543ce27c5ad1f7b5f798c84 254 PANTHER PTHR11609:SF2 3 240 2.7E-117 T 22-04-2016 RM11_RS03745 16ce3c91c543ce27c5ad1f7b5f798c84 254 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 5 239 1.3E-67 T 22-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RM11_RS03745 16ce3c91c543ce27c5ad1f7b5f798c84 254 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 238 31.829 T 22-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RM11_RS03745 16ce3c91c543ce27c5ad1f7b5f798c84 254 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 22-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RM11_RS02765 f990f03a11ba41d21e6eb609d1eea632 152 SUPERFAMILY SSF52121 4 150 1.96E-47 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS02765 f990f03a11ba41d21e6eb609d1eea632 152 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 10 143 1.6E-28 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS02765 f990f03a11ba41d21e6eb609d1eea632 152 PANTHER PTHR21058 11 148 2.0E-37 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS02765 f990f03a11ba41d21e6eb609d1eea632 152 Gene3D G3DSA:3.40.50.960 6 148 1.5E-48 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS02765 f990f03a11ba41d21e6eb609d1eea632 152 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 9 145 2.4E-42 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS02765 f990f03a11ba41d21e6eb609d1eea632 152 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 4 148 23.111 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS06350 1ed29b52e43353d3a5f7a58a32aad7e4 133 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 124 1.6E-25 T 22-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RM11_RS06350 1ed29b52e43353d3a5f7a58a32aad7e4 133 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 8 128 2.9E-34 T 22-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 RM11_RS06350 1ed29b52e43353d3a5f7a58a32aad7e4 133 SUPERFAMILY SSF81343 3 127 2.62E-30 T 22-04-2016 RM11_RS06350 1ed29b52e43353d3a5f7a58a32aad7e4 133 PANTHER PTHR10978 1 128 6.5E-23 T 22-04-2016 RM11_RS06350 1ed29b52e43353d3a5f7a58a32aad7e4 133 PIRSF PIRSF000178 1 130 5.0E-31 T 22-04-2016 RM11_RS06350 1ed29b52e43353d3a5f7a58a32aad7e4 133 Gene3D G3DSA:1.20.1300.10 5 127 4.2E-34 T 22-04-2016 RM11_RS06350 1ed29b52e43353d3a5f7a58a32aad7e4 133 PANTHER PTHR10978:SF6 1 128 6.5E-23 T 22-04-2016 RM11_RS04745 59c2cd3d58c8b5d887a0e5607abe2bda 260 Gene3D G3DSA:3.40.50.300 6 235 2.2E-73 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04745 59c2cd3d58c8b5d887a0e5607abe2bda 260 PANTHER PTHR24220:SF336 9 248 8.1E-96 T 22-04-2016 RM11_RS04745 59c2cd3d58c8b5d887a0e5607abe2bda 260 Pfam PF00005 ABC transporter 27 173 9.2E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS04745 59c2cd3d58c8b5d887a0e5607abe2bda 260 PANTHER PTHR24220 9 248 8.1E-96 T 22-04-2016 RM11_RS04745 59c2cd3d58c8b5d887a0e5607abe2bda 260 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS04745 59c2cd3d58c8b5d887a0e5607abe2bda 260 SUPERFAMILY SSF52540 7 234 1.92E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04745 59c2cd3d58c8b5d887a0e5607abe2bda 260 SMART SM00382 36 221 7.1E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06110 ebd4ce4ab4bf91175f365afdfbf21010 740 Gene3D G3DSA:3.40.50.300 465 645 4.8E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06110 ebd4ce4ab4bf91175f365afdfbf21010 740 SUPERFAMILY SSF52540 201 388 5.87E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06110 ebd4ce4ab4bf91175f365afdfbf21010 740 PANTHER PTHR30580 5 740 4.9E-203 T 22-04-2016 RM11_RS06110 ebd4ce4ab4bf91175f365afdfbf21010 740 SMART SM00490 505 602 0.0018 T 22-04-2016 IPR001650 Helicase, C-terminal RM11_RS06110 ebd4ce4ab4bf91175f365afdfbf21010 740 Hamap MF_00983 Probable primosomal protein N' [priA]. 17 739 23.265 T 22-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RM11_RS06110 ebd4ce4ab4bf91175f365afdfbf21010 740 TIGRFAM TIGR00595 priA: primosomal protein N' 231 736 2.1E-184 T 22-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RM11_RS06110 ebd4ce4ab4bf91175f365afdfbf21010 740 SMART SM00487 203 402 6.6E-19 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RM11_RS06110 ebd4ce4ab4bf91175f365afdfbf21010 740 Gene3D G3DSA:3.40.50.300 207 392 1.3E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06110 ebd4ce4ab4bf91175f365afdfbf21010 740 Pfam PF00270 DEAD/DEAH box helicase 211 372 3.1E-13 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RM11_RS06110 ebd4ce4ab4bf91175f365afdfbf21010 740 SUPERFAMILY SSF52540 473 632 1.23E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03125 1c122f2ee11818c62d1383a611e11951 270 SUPERFAMILY SSF53681 111 262 2.29E-28 T 22-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS03125 1c122f2ee11818c62d1383a611e11951 270 Pfam PF01177 Asp/Glu/Hydantoin racemase 11 220 2.0E-15 T 22-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS03125 1c122f2ee11818c62d1383a611e11951 270 Hamap MF_00258 Glutamate racemase [murI]. 4 261 30.284 T 22-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS03125 1c122f2ee11818c62d1383a611e11951 270 SUPERFAMILY SSF53681 5 108 3.6E-26 T 22-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS03125 1c122f2ee11818c62d1383a611e11951 270 TIGRFAM TIGR00067 glut_race: glutamate racemase 6 248 2.9E-52 T 22-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS03125 1c122f2ee11818c62d1383a611e11951 270 Gene3D G3DSA:3.40.50.1860 2 172 2.4E-40 T 22-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS03125 1c122f2ee11818c62d1383a611e11951 270 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 185 195 - T 22-04-2016 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS05305 0567c07451446c4eec1cfbfbc51ed389 184 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 130 183 3.0E-25 T 22-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RM11_RS05305 0567c07451446c4eec1cfbfbc51ed389 184 Pfam PF01106 NifU-like domain 122 181 3.8E-25 T 22-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RM11_RS05305 0567c07451446c4eec1cfbfbc51ed389 184 SUPERFAMILY SSF117916 108 182 1.16E-24 T 22-04-2016 RM11_RS05305 0567c07451446c4eec1cfbfbc51ed389 184 SMART SM00932 3 89 1.8E-45 T 22-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RM11_RS05305 0567c07451446c4eec1cfbfbc51ed389 184 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 3 88 2.7E-29 T 22-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RM11_RS05305 0567c07451446c4eec1cfbfbc51ed389 184 PIRSF PIRSF036773 1 184 6.2E-68 T 22-04-2016 RM11_RS05305 0567c07451446c4eec1cfbfbc51ed389 184 Gene3D G3DSA:3.30.1370.70 1 90 1.9E-30 T 22-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RM11_RS05305 0567c07451446c4eec1cfbfbc51ed389 184 SUPERFAMILY SSF110836 1 91 2.09E-27 T 22-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PANTHER PTHR20854:SF4 1 261 7.1E-89 T 22-04-2016 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 22-04-2016 IPR020583 Inositol monophosphatase, metal-binding site RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 Pfam PF00459 Inositol monophosphatase family 6 255 9.1E-60 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PRINTS PR01959 SuhB family inositol monophosphatase signature 106 125 1.7E-23 T 22-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PRINTS PR01959 SuhB family inositol monophosphatase signature 19 41 1.7E-23 T 22-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PRINTS PR01959 SuhB family inositol monophosphatase signature 200 212 1.7E-23 T 22-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PRINTS PR01959 SuhB family inositol monophosphatase signature 158 184 1.7E-23 T 22-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 213 227 - T 22-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 SUPERFAMILY SSF56655 5 261 2.49E-82 T 22-04-2016 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 Gene3D G3DSA:3.30.540.10 5 152 2.3E-50 T 22-04-2016 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PANTHER PTHR20854 1 261 7.1E-89 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 3.6E-53 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 179 200 3.6E-53 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 210 234 3.6E-53 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 132 155 3.6E-53 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 3.6E-53 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 3.6E-53 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS05950 4885db6b6a2dd606a5ec80ad985be4b1 263 Gene3D G3DSA:3.40.190.80 153 261 2.2E-34 T 22-04-2016 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 PANTHER PTHR22931 1 887 0.0 T 22-04-2016 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Gene3D G3DSA:3.50.30.10 416 519 3.6E-40 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 PIRSF PIRSF000853 1 888 0.0 T 22-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Gene3D G3DSA:3.20.20.60 545 885 7.3E-137 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Pfam PF00391 PEP-utilising enzyme, mobile domain 436 516 5.9E-28 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 3 884 0.0 T 22-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Gene3D G3DSA:3.30.1490.20 3 114 8.0E-58 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Gene3D G3DSA:3.30.1490.20 203 246 8.0E-58 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 21 297 2.8E-50 T 22-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 315 371 5.0E-12 T 22-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 463 474 - T 22-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 774 792 - T 22-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Gene3D G3DSA:1.10.189.10 357 415 1.2E-30 T 22-04-2016 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 531 882 1.9E-91 T 22-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 SUPERFAMILY SSF56059 1 393 1.17E-146 T 22-04-2016 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 PANTHER PTHR22931:SF9 1 887 0.0 T 22-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Gene3D G3DSA:3.30.470.20 247 356 1.7E-39 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 SUPERFAMILY SSF51621 524 883 3.14E-130 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 SUPERFAMILY SSF52009 404 524 2.35E-36 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RM11_RS01930 0182901f271e9cc45487445ea00a18fa 888 Gene3D G3DSA:1.20.80.30 115 201 8.5E-33 T 22-04-2016 RM11_RS00865 b2a07a418ea5ec057a5d852cce4ac615 441 SUPERFAMILY SSF53850 25 429 3.75E-68 T 22-04-2016 RM11_RS00865 b2a07a418ea5ec057a5d852cce4ac615 441 Pfam PF13416 Bacterial extracellular solute-binding protein 44 363 1.1E-37 T 22-04-2016 RM11_RS00865 b2a07a418ea5ec057a5d852cce4ac615 441 PANTHER PTHR30061:SF7 6 439 2.4E-131 T 22-04-2016 RM11_RS00865 b2a07a418ea5ec057a5d852cce4ac615 441 PANTHER PTHR30061 6 439 2.4E-131 T 22-04-2016 RM11_RS00865 b2a07a418ea5ec057a5d852cce4ac615 441 Gene3D G3DSA:3.40.190.10 145 359 1.1E-35 T 22-04-2016 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 PANTHER PTHR21262:SF0 6 551 1.1E-284 T 22-04-2016 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 PANTHER PTHR21262:SF0 569 742 1.1E-284 T 22-04-2016 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 Pfam PF13291 ACT domain 663 739 8.2E-18 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 SUPERFAMILY SSF81301 181 396 2.78E-57 T 22-04-2016 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 Pfam PF13328 HD domain 26 175 8.4E-46 T 22-04-2016 IPR003607 HD/PDEase domain RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 Pfam PF04607 Region found in RelA / SpoT proteins 235 344 2.8E-35 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 Gene3D G3DSA:3.10.20.30 391 452 2.7E-21 T 22-04-2016 IPR012675 Beta-grasp domain RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 SMART SM00954 235 345 1.0E-56 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 PANTHER PTHR21262 6 551 1.1E-284 T 22-04-2016 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 PANTHER PTHR21262 569 742 1.1E-284 T 22-04-2016 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 Gene3D G3DSA:3.30.460.10 192 325 3.5E-44 T 22-04-2016 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 SUPERFAMILY SSF109604 6 191 9.1E-68 T 22-04-2016 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 SMART SM00471 41 153 3.2E-8 T 22-04-2016 IPR003607 HD/PDEase domain RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 SUPERFAMILY SSF81271 379 451 4.36E-20 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 Pfam PF02824 TGS domain 393 450 1.6E-18 T 22-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 737 7.6E-201 T 22-04-2016 IPR004811 RelA/SpoT family GO:0015969 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 Gene3D G3DSA:3.30.70.260 665 731 1.3E-10 T 22-04-2016 RM11_RS02170 1171acc1d977c0618c565d59590b7005 742 SUPERFAMILY SSF55021 668 739 4.2E-11 T 22-04-2016 RM11_RS05110 7583d1f97b93907067ad921da52a8be5 316 SUPERFAMILY SSF81345 9 312 1.44E-49 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS05110 7583d1f97b93907067ad921da52a8be5 316 Gene3D G3DSA:1.10.3470.10 30 314 4.2E-42 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS05110 7583d1f97b93907067ad921da52a8be5 316 PANTHER PTHR30472 14 312 3.0E-96 T 22-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RM11_RS05110 7583d1f97b93907067ad921da52a8be5 316 PANTHER PTHR30472:SF19 14 312 3.0E-96 T 22-04-2016 RM11_RS05110 7583d1f97b93907067ad921da52a8be5 316 Pfam PF01032 FecCD transport family 22 312 3.4E-43 T 22-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 ProSitePatterns PS01071 grpE protein signature. 162 205 - T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 Pfam PF01025 GrpE 44 207 1.1E-51 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 Gene3D G3DSA:2.30.22.10 151 208 9.3E-25 T 22-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 SUPERFAMILY SSF58014 51 151 3.14E-26 T 22-04-2016 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 SUPERFAMILY SSF51064 152 208 1.19E-18 T 22-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 PRINTS PR00773 GrpE protein signature 72 88 3.2E-26 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 PRINTS PR00773 GrpE protein signature 159 174 3.2E-26 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 PRINTS PR00773 GrpE protein signature 100 115 3.2E-26 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 PRINTS PR00773 GrpE protein signature 186 205 3.2E-26 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 PANTHER PTHR21237 39 210 3.9E-66 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 Hamap MF_01151 Protein GrpE [grpE]. 24 207 19.628 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RM11_RS00260 432f9dd8d87aaf867aad9a993ac6df8f 220 Gene3D G3DSA:3.90.20.20 46 150 1.8E-31 T 22-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil RM11_RS06170 89600ae833cf0bdb1997476eac3768fd 660 Pfam PF12704 MacB-like periplasmic core domain 284 498 1.2E-34 T 22-04-2016 IPR025857 MacB-like periplasmic core domain RM11_RS06170 89600ae833cf0bdb1997476eac3768fd 660 Gene3D G3DSA:3.40.50.300 4 248 2.0E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06170 89600ae833cf0bdb1997476eac3768fd 660 PANTHER PTHR24220:SF86 11 238 3.6E-97 T 22-04-2016 RM11_RS06170 89600ae833cf0bdb1997476eac3768fd 660 Pfam PF00005 ABC transporter 29 177 1.7E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS06170 89600ae833cf0bdb1997476eac3768fd 660 Pfam PF02687 FtsX-like permease family 540 653 1.5E-16 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RM11_RS06170 89600ae833cf0bdb1997476eac3768fd 660 SMART SM00382 38 225 1.1E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06170 89600ae833cf0bdb1997476eac3768fd 660 PANTHER PTHR24220 11 238 3.6E-97 T 22-04-2016 RM11_RS06170 89600ae833cf0bdb1997476eac3768fd 660 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS06170 89600ae833cf0bdb1997476eac3768fd 660 SUPERFAMILY SSF52540 10 230 1.39E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 SMART SM00465 70 151 5.7E-21 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 Pfam PF02151 UvrB/uvrC motif 259 290 3.4E-9 T 22-04-2016 IPR001943 UVR domain GO:0005515 RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 62 656 3.5E-173 T 22-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 Pfam PF12826 Helix-hairpin-helix motif 628 677 5.0E-8 T 22-04-2016 RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 Gene3D G3DSA:1.10.150.20 625 676 2.1E-20 T 22-04-2016 RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 Pfam PF01541 GIY-YIG catalytic domain 71 143 5.1E-11 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 Hamap MF_00203 UvrABC system protein C [uvrC]. 57 674 27.488 T 22-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 SUPERFAMILY SSF47781 588 677 2.89E-22 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 435 609 2.8E-52 T 22-04-2016 IPR001162 UvrC family homology region RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 SUPERFAMILY SSF46600 243 296 6.41E-13 T 22-04-2016 IPR001943 UVR domain GO:0005515 RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 SMART SM00278 623 642 150.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 SMART SM00278 655 674 0.38 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 SUPERFAMILY SSF82771 69 153 2.09E-22 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 Gene3D G3DSA:4.10.860.10 235 295 4.1E-17 T 22-04-2016 IPR001943 UVR domain GO:0005515 RM11_RS02420 d887ecb30f95da895ac7173c8b0d862b 678 Gene3D G3DSA:3.40.1440.10 70 150 2.2E-11 T 22-04-2016 IPR027299 GIY-YIG domain RM11_RS00415 23629985a714743d60a74fd539f9e46b 301 SUPERFAMILY SSF81345 3 292 1.19E-30 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS00415 23629985a714743d60a74fd539f9e46b 301 Gene3D G3DSA:1.10.3470.10 71 295 5.1E-8 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS00415 23629985a714743d60a74fd539f9e46b 301 Pfam PF00950 ABC 3 transport family 10 289 2.7E-65 T 22-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RM11_RS00415 23629985a714743d60a74fd539f9e46b 301 PANTHER PTHR30477 2 75 1.4E-93 T 22-04-2016 RM11_RS00415 23629985a714743d60a74fd539f9e46b 301 PANTHER PTHR30477 92 296 1.4E-93 T 22-04-2016 RM11_RS00415 23629985a714743d60a74fd539f9e46b 301 PANTHER PTHR30477:SF9 2 75 1.4E-93 T 22-04-2016 RM11_RS00415 23629985a714743d60a74fd539f9e46b 301 PANTHER PTHR30477:SF9 92 296 1.4E-93 T 22-04-2016 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SUPERFAMILY SSF52172 729 848 4.13E-30 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SUPERFAMILY SSF55785 195 271 3.56E-5 T 22-04-2016 IPR000014 PAS domain RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 Pfam PF13188 PAS domain 350 397 0.0073 T 22-04-2016 IPR000014 PAS domain RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SUPERFAMILY SSF47384 467 536 2.75E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 Gene3D G3DSA:3.30.565.10 539 701 3.1E-39 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 Gene3D G3DSA:3.40.50.2300 729 848 3.4E-30 T 22-04-2016 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 Gene3D G3DSA:1.10.287.130 468 535 1.6E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 581 701 4.1E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 PANTHER PTHR24423 342 847 1.7E-150 T 22-04-2016 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 PANTHER PTHR24423 173 214 1.7E-150 T 22-04-2016 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 PRINTS PR00344 Bacterial sensor protein C-terminal signature 632 646 1.3E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 PRINTS PR00344 Bacterial sensor protein C-terminal signature 687 700 1.3E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 PRINTS PR00344 Bacterial sensor protein C-terminal signature 650 660 1.3E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 PRINTS PR00344 Bacterial sensor protein C-terminal signature 663 681 1.3E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SMART SM00091 344 409 0.24 T 22-04-2016 IPR000014 PAS domain RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SMART SM00091 84 152 160.0 T 22-04-2016 IPR000014 PAS domain RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SMART SM00091 211 278 1.6 T 22-04-2016 IPR000014 PAS domain RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 Pfam PF00072 Response regulator receiver domain 732 843 8.2E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 Pfam PF00512 His Kinase A (phospho-acceptor) domain 474 537 1.1E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 Gene3D G3DSA:3.30.450.20 348 439 4.7E-7 T 22-04-2016 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 Gene3D G3DSA:3.30.450.20 88 196 4.1E-4 T 22-04-2016 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SMART SM00448 730 843 4.7E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SMART SM00387 580 703 9.6E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SUPERFAMILY SSF55785 349 436 2.62E-6 T 22-04-2016 IPR000014 PAS domain RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SMART SM00388 473 539 3.8E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 PANTHER PTHR24423:SF379 342 847 1.7E-150 T 22-04-2016 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 PANTHER PTHR24423:SF379 173 214 1.7E-150 T 22-04-2016 RM11_RS03710 ffdd1b279cebcfbcacd65fb208587978 849 SUPERFAMILY SSF55874 529 705 5.5E-40 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS04145 fb8a7c03d3d1992a9ba8857d88f9c130 156 Gene3D G3DSA:1.10.455.10 7 156 1.6E-67 T 22-04-2016 IPR023798 Ribosomal protein S7 domain RM11_RS04145 fb8a7c03d3d1992a9ba8857d88f9c130 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.556 T 22-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RM11_RS04145 fb8a7c03d3d1992a9ba8857d88f9c130 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 22-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 RM11_RS04145 fb8a7c03d3d1992a9ba8857d88f9c130 156 SUPERFAMILY SSF47973 3 149 7.06E-64 T 22-04-2016 IPR023798 Ribosomal protein S7 domain RM11_RS04145 fb8a7c03d3d1992a9ba8857d88f9c130 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 6.9E-68 T 22-04-2016 IPR023798 Ribosomal protein S7 domain RM11_RS04145 fb8a7c03d3d1992a9ba8857d88f9c130 156 PIRSF PIRSF002122 2 156 1.9E-61 T 22-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RM11_RS04145 fb8a7c03d3d1992a9ba8857d88f9c130 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 2.3E-68 T 22-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RM11_RS04145 fb8a7c03d3d1992a9ba8857d88f9c130 156 PANTHER PTHR11205 1 156 1.5E-92 T 22-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 SUPERFAMILY SSF52540 138 167 1.43E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 463 2.4E-164 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 SUPERFAMILY SSF52540 3 165 1.73E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 Gene3D G3DSA:3.30.300.20 390 464 1.7E-32 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 PANTHER PTHR11649 1 166 9.5E-182 T 22-04-2016 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 PANTHER PTHR11649 190 467 9.5E-182 T 22-04-2016 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 PANTHER PTHR11649:SF68 1 166 9.5E-182 T 22-04-2016 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 PANTHER PTHR11649:SF68 190 467 9.5E-182 T 22-04-2016 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 383 463 5.7E-32 T 22-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 PIRSF PIRSF006485 1 471 2.7E-154 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 Gene3D G3DSA:3.40.50.300 201 389 3.2E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 Gene3D G3DSA:3.40.50.300 3 170 3.4E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 Hamap MF_00195 GTPase Der [der]. 2 466 35.288 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 205 373 7.9E-24 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 151 3.3E-21 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 Pfam PF01926 50S ribosome-binding GTPase 5 120 2.2E-25 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 Pfam PF01926 50S ribosome-binding GTPase 207 325 1.4E-20 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS01555 5a81e742b6365f566c4cd96f63d98373 476 SUPERFAMILY SSF52540 203 469 1.43E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 54 103 1.2E-6 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 PANTHER PTHR11262:SF3 211 436 1.1E-191 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 PANTHER PTHR11262:SF3 5 106 1.1E-191 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 2 436 41.175 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 Gene3D G3DSA:1.10.8.10 112 167 6.3E-26 T 22-04-2016 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 Gene3D G3DSA:1.10.8.10 206 236 6.3E-26 T 22-04-2016 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 Gene3D G3DSA:3.40.50.300 7 111 2.0E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 Gene3D G3DSA:3.40.50.300 238 324 2.0E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 Gene3D G3DSA:1.10.8.60 327 436 2.3E-34 T 22-04-2016 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 PANTHER PTHR11262 211 436 1.1E-191 T 22-04-2016 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 PANTHER PTHR11262 5 106 1.1E-191 T 22-04-2016 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 6 436 1.0E-179 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 Pfam PF07724 AAA domain (Cdc48 subfamily) 199 322 5.4E-36 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 SUPERFAMILY SSF52540 7 434 2.25E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 SMART SM00382 50 325 5.3E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 SMART SM01086 328 422 3.7E-24 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RM11_RS00965 a9549aa6d889b0f84b455b17668f141d 436 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 328 396 3.6E-7 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RM11_RS03495 c6c483be33a7a3da7631f8954d5a5373 271 Pfam PF01148 Cytidylyltransferase family 6 255 1.5E-50 T 22-04-2016 RM11_RS03495 c6c483be33a7a3da7631f8954d5a5373 271 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 216 242 - T 22-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 RM11_RS03495 c6c483be33a7a3da7631f8954d5a5373 271 PANTHER PTHR13773:SF0 2 271 7.5E-40 T 22-04-2016 RM11_RS03495 c6c483be33a7a3da7631f8954d5a5373 271 PANTHER PTHR13773 2 271 7.5E-40 T 22-04-2016 RM11_RS02550 2dceed6663624e4a2b9ab781b13828d9 162 Pfam PF02464 Competence-damaged protein 7 160 1.9E-52 T 22-04-2016 IPR008136 CinA, C-terminal RM11_RS02550 2dceed6663624e4a2b9ab781b13828d9 162 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 159 1.4E-41 T 22-04-2016 IPR008136 CinA, C-terminal RM11_RS02550 2dceed6663624e4a2b9ab781b13828d9 162 Gene3D G3DSA:3.90.950.20 7 161 3.4E-54 T 22-04-2016 IPR008136 CinA, C-terminal RM11_RS02550 2dceed6663624e4a2b9ab781b13828d9 162 SUPERFAMILY SSF142433 7 161 1.26E-52 T 22-04-2016 IPR008136 CinA, C-terminal RM11_RS02550 2dceed6663624e4a2b9ab781b13828d9 162 PANTHER PTHR13939 9 162 1.7E-51 T 22-04-2016 RM11_RS06755 7c51d1cfa98f10b395316b48f80501f9 265 Gene3D G3DSA:3.40.50.300 5 261 3.5E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06755 7c51d1cfa98f10b395316b48f80501f9 265 PANTHER PTHR13696 2 260 3.1E-84 T 22-04-2016 RM11_RS06755 7c51d1cfa98f10b395316b48f80501f9 265 SUPERFAMILY SSF52540 4 259 6.87E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06755 7c51d1cfa98f10b395316b48f80501f9 265 Pfam PF13614 AAA domain 4 183 3.4E-58 T 22-04-2016 IPR025669 AAA domain RM11_RS06755 7c51d1cfa98f10b395316b48f80501f9 265 PANTHER PTHR13696:SF52 2 260 3.1E-84 T 22-04-2016 RM11_RS00100 906352fab0ad10eb8a5057e385303f23 409 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 28 393 69.4 T 22-04-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS00100 906352fab0ad10eb8a5057e385303f23 409 Pfam PF04055 Radical SAM superfamily 142 321 7.7E-16 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RM11_RS00100 906352fab0ad10eb8a5057e385303f23 409 PIRSF PIRSF006004 20 405 8.7E-136 T 22-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS00100 906352fab0ad10eb8a5057e385303f23 409 Gene3D G3DSA:3.20.20.70 137 364 1.6E-14 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS00100 906352fab0ad10eb8a5057e385303f23 409 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 25 392 7.6E-115 T 22-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS00100 906352fab0ad10eb8a5057e385303f23 409 PANTHER PTHR30544 199 399 2.1E-158 T 22-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS00100 906352fab0ad10eb8a5057e385303f23 409 PANTHER PTHR30544 25 182 2.1E-158 T 22-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS00100 906352fab0ad10eb8a5057e385303f23 409 SUPERFAMILY SSF102114 134 368 1.47E-12 T 22-04-2016 RM11_RS00100 906352fab0ad10eb8a5057e385303f23 409 PANTHER PTHR30544:SF5 199 399 2.1E-158 T 22-04-2016 RM11_RS00100 906352fab0ad10eb8a5057e385303f23 409 PANTHER PTHR30544:SF5 25 182 2.1E-158 T 22-04-2016 RM11_RS00340 7f93951b3318e3a11b9544be8f2fb6ba 247 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 242 3.5E-58 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00340 7f93951b3318e3a11b9544be8f2fb6ba 247 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 247 33.257 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00340 7f93951b3318e3a11b9544be8f2fb6ba 247 PIRSF PIRSF001430 1 247 6.1E-69 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00340 7f93951b3318e3a11b9544be8f2fb6ba 247 Pfam PF01416 tRNA pseudouridine synthase 146 247 6.0E-27 T 22-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00340 7f93951b3318e3a11b9544be8f2fb6ba 247 Pfam PF01416 tRNA pseudouridine synthase 9 106 7.3E-9 T 22-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00340 7f93951b3318e3a11b9544be8f2fb6ba 247 SUPERFAMILY SSF55120 1 247 1.05E-82 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00340 7f93951b3318e3a11b9544be8f2fb6ba 247 PANTHER PTHR11142 3 247 2.5E-80 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00340 7f93951b3318e3a11b9544be8f2fb6ba 247 Gene3D G3DSA:3.30.70.580 1 108 2.5E-34 T 22-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00340 7f93951b3318e3a11b9544be8f2fb6ba 247 Gene3D G3DSA:3.30.70.660 110 245 1.9E-45 T 22-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS06365 671a8bf84a317f6566fd694de5aaf322 197 PANTHER PTHR33692 9 191 9.5E-35 T 22-04-2016 RM11_RS06365 671a8bf84a317f6566fd694de5aaf322 197 Gene3D G3DSA:2.40.30.60 6 93 3.4E-19 T 22-04-2016 IPR002676 RimM protein GO:0006364 RM11_RS06365 671a8bf84a317f6566fd694de5aaf322 197 SUPERFAMILY SSF50447 11 93 2.61E-17 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RM11_RS06365 671a8bf84a317f6566fd694de5aaf322 197 SUPERFAMILY SSF50346 102 170 3.14E-15 T 22-04-2016 IPR011033 PRC-barrel-like RM11_RS06365 671a8bf84a317f6566fd694de5aaf322 197 Gene3D G3DSA:2.30.30.240 102 169 3.2E-15 T 22-04-2016 RM11_RS06365 671a8bf84a317f6566fd694de5aaf322 197 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 11 174 21.21 T 22-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RM11_RS06365 671a8bf84a317f6566fd694de5aaf322 197 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 15 169 3.8E-38 T 22-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RM11_RS06365 671a8bf84a317f6566fd694de5aaf322 197 Pfam PF01782 RimM N-terminal domain 19 92 1.1E-18 T 22-04-2016 IPR002676 RimM protein GO:0006364 RM11_RS06365 671a8bf84a317f6566fd694de5aaf322 197 Pfam PF05239 PRC-barrel domain 99 169 1.4E-8 T 22-04-2016 IPR027275 PRC-barrel domain RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 Gene3D G3DSA:3.90.650.10 568 676 1.2E-4 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 Gene3D G3DSA:3.90.650.10 218 355 2.4E-4 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 Gene3D G3DSA:3.30.1330.10 51 195 2.8E-48 T 22-04-2016 IPR016188 PurM-like, N-terminal domain RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 Gene3D G3DSA:3.30.1330.10 413 559 2.3E-55 T 22-04-2016 IPR016188 PurM-like, N-terminal domain RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 19 733 7.4E-285 T 22-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 PANTHER PTHR10099:SF2 19 735 4.4E-301 T 22-04-2016 RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 PANTHER PTHR10099 19 735 4.4E-301 T 22-04-2016 RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 SUPERFAMILY SSF55326 14 197 1.32E-48 T 22-04-2016 RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 Pfam PF02769 AIR synthase related protein, C-terminal domain 573 705 3.1E-15 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 Pfam PF02769 AIR synthase related protein, C-terminal domain 204 356 2.2E-29 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 PIRSF PIRSF001587 5 736 2.7E-286 T 22-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 SUPERFAMILY SSF55326 398 565 6.93E-53 T 22-04-2016 RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 Pfam PF00586 AIR synthase related protein, N-terminal domain 452 556 1.3E-19 T 22-04-2016 IPR016188 PurM-like, N-terminal domain RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 Pfam PF00586 AIR synthase related protein, N-terminal domain 89 189 5.2E-23 T 22-04-2016 IPR016188 PurM-like, N-terminal domain RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 SUPERFAMILY SSF56042 199 424 9.27E-54 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 736 317.199 T 22-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03760 9613cf9b47e683c5c38d02c75263552c 736 SUPERFAMILY SSF56042 570 733 1.08E-32 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Gene3D G3DSA:3.30.1480.10 8 130 1.2E-45 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 PANTHER PTHR22648 6 452 3.0E-172 T 22-04-2016 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Gene3D G3DSA:3.30.300.20 203 281 3.7E-37 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 SUPERFAMILY SSF69705 8 130 4.71E-38 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Gene3D G3DSA:3.30.300.20 283 350 4.4E-32 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 SMART SM00322 234 297 13.0 T 22-04-2016 IPR004087 K Homology domain GO:0003676 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 SMART SM00322 305 378 6.0E-5 T 22-04-2016 IPR004087 K Homology domain GO:0003676 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Pfam PF14520 Helix-hairpin-helix domain 377 416 7.6E-4 T 22-04-2016 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Gene3D G3DSA:1.10.150.20 358 423 6.8E-19 T 22-04-2016 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 SUPERFAMILY SSF50249 136 203 8.17E-19 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 369 418 7.8E-18 T 22-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 SUPERFAMILY SSF54814 283 346 1.44E-16 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Pfam PF13184 NusA-like KH domain 234 300 2.2E-28 T 22-04-2016 IPR025249 KH domain, NusA-like GO:0003723 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Gene3D G3DSA:2.40.50.140 133 202 4.1E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 SUPERFAMILY SSF54814 204 281 1.24E-31 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 SMART SM00316 138 204 7.4E-10 T 22-04-2016 IPR022967 RNA-binding domain, S1 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Pfam PF00575 S1 RNA binding domain 138 196 1.1E-4 T 22-04-2016 IPR003029 S1 domain GO:0003676 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Gene3D G3DSA:1.10.150.20 435 507 4.5E-11 T 22-04-2016 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 PANTHER PTHR22648:SF0 6 452 3.0E-172 T 22-04-2016 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 9 346 7.0E-136 T 22-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 SUPERFAMILY SSF47794 357 419 5.65E-15 T 22-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 7 414 30.647 T 22-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 RM11_RS01010 5cb737191e82b42b4d07ae830f2d8a76 543 Pfam PF08529 NusA N-terminal domain 9 129 2.2E-33 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RM11_RS03190 1f6ffc83adf95d1c04ea70fed5c71320 236 SMART SM00382 28 215 8.2E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS03190 1f6ffc83adf95d1c04ea70fed5c71320 236 Pfam PF00005 ABC transporter 20 164 7.0E-27 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS03190 1f6ffc83adf95d1c04ea70fed5c71320 236 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS03190 1f6ffc83adf95d1c04ea70fed5c71320 236 Gene3D G3DSA:3.40.50.300 3 233 7.4E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03190 1f6ffc83adf95d1c04ea70fed5c71320 236 PANTHER PTHR24220 5 235 4.8E-118 T 22-04-2016 RM11_RS03190 1f6ffc83adf95d1c04ea70fed5c71320 236 SUPERFAMILY SSF52540 3 234 1.11E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03190 1f6ffc83adf95d1c04ea70fed5c71320 236 PANTHER PTHR24220:SF568 5 235 4.8E-118 T 22-04-2016 RM11_RS03190 1f6ffc83adf95d1c04ea70fed5c71320 236 PIRSF PIRSF039137 1 236 9.0E-111 T 22-04-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 RM11_RS03400 ae6d74f4d8eed5e2d9c4754365402112 558 PANTHER PTHR23090 8 552 4.8E-141 T 22-04-2016 RM11_RS03400 ae6d74f4d8eed5e2d9c4754365402112 558 SUPERFAMILY SSF56317 9 245 8.37E-54 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RM11_RS03400 ae6d74f4d8eed5e2d9c4754365402112 558 Pfam PF02540 NAD synthase 275 530 2.2E-72 T 22-04-2016 IPR022310 NAD/GMP synthase RM11_RS03400 ae6d74f4d8eed5e2d9c4754365402112 558 Gene3D G3DSA:3.60.110.10 9 246 2.7E-53 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RM11_RS03400 ae6d74f4d8eed5e2d9c4754365402112 558 Pfam PF00795 Carbon-nitrogen hydrolase 11 246 2.3E-30 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RM11_RS03400 ae6d74f4d8eed5e2d9c4754365402112 558 Gene3D G3DSA:3.40.50.620 273 538 6.4E-71 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS03400 ae6d74f4d8eed5e2d9c4754365402112 558 SUPERFAMILY SSF52402 270 539 8.38E-75 T 22-04-2016 RM11_RS03400 ae6d74f4d8eed5e2d9c4754365402112 558 TIGRFAM TIGR00552 nadE: NAD+ synthetase 282 533 1.1E-58 T 22-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 Pfam PF07244 Surface antigen variable number repeat 188 275 5.1E-17 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 Pfam PF07244 Surface antigen variable number repeat 40 105 1.1E-6 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 Pfam PF07244 Surface antigen variable number repeat 361 432 3.5E-14 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 Pfam PF07244 Surface antigen variable number repeat 109 184 3.6E-12 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 Pfam PF07244 Surface antigen variable number repeat 278 357 9.8E-10 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 Gene3D G3DSA:2.40.160.50 400 798 4.5E-18 T 22-04-2016 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 18 798 22.258 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 PIRSF PIRSF006076 2 798 1.3E-240 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 PANTHER PTHR12815 20 798 2.9E-171 T 22-04-2016 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 Pfam PF01103 Surface antigen 463 798 2.4E-78 T 22-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 40 798 5.2E-222 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RM11_RS03485 415e94e7f68e0b2cdd5f2ccd3b365625 798 PANTHER PTHR12815:SF11 20 798 2.9E-171 T 22-04-2016 RM11_RS03555 29c6e84ad91843e87d5e10d545499f96 465 Gene3D G3DSA:3.30.1330.90 11 163 6.3E-51 T 22-04-2016 IPR029009 Allosteric substrate binding domain RM11_RS03555 29c6e84ad91843e87d5e10d545499f96 465 Pfam PF03313 Serine dehydratase alpha chain 194 459 1.8E-99 T 22-04-2016 IPR005130 Serine dehydratase-like, alpha subunit RM11_RS03555 29c6e84ad91843e87d5e10d545499f96 465 PANTHER PTHR30182 3 461 7.6E-207 T 22-04-2016 RM11_RS03555 29c6e84ad91843e87d5e10d545499f96 465 Pfam PF03315 Serine dehydratase beta chain 4 161 2.5E-54 T 22-04-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 RM11_RS03555 29c6e84ad91843e87d5e10d545499f96 465 SUPERFAMILY SSF143548 17 163 2.51E-42 T 22-04-2016 IPR029009 Allosteric substrate binding domain RM11_RS03555 29c6e84ad91843e87d5e10d545499f96 465 PANTHER PTHR30182:SF1 3 461 7.6E-207 T 22-04-2016 RM11_RS03555 29c6e84ad91843e87d5e10d545499f96 465 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 4 461 5.8E-189 T 22-04-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 RM11_RS04980 1f2890833506293131e3dee9a5fd5e4e 304 PANTHER PTHR22778:SF12 7 292 1.9E-99 T 22-04-2016 RM11_RS04980 1f2890833506293131e3dee9a5fd5e4e 304 SUPERFAMILY SSF52821 91 227 3.98E-30 T 22-04-2016 IPR001763 Rhodanese-like domain RM11_RS04980 1f2890833506293131e3dee9a5fd5e4e 304 Gene3D G3DSA:3.40.250.10 106 228 3.0E-40 T 22-04-2016 IPR001763 Rhodanese-like domain RM11_RS04980 1f2890833506293131e3dee9a5fd5e4e 304 Pfam PF00581 Rhodanese-like domain 117 212 5.0E-10 T 22-04-2016 IPR001763 Rhodanese-like domain RM11_RS04980 1f2890833506293131e3dee9a5fd5e4e 304 Hamap MF_00469 UPF0176 protein YceA [yceA]. 3 256 43.913 T 22-04-2016 IPR020936 Uncharacterised protein family UPF0176 RM11_RS04980 1f2890833506293131e3dee9a5fd5e4e 304 SMART SM00450 114 216 5.3E-19 T 22-04-2016 IPR001763 Rhodanese-like domain RM11_RS04980 1f2890833506293131e3dee9a5fd5e4e 304 PANTHER PTHR22778 7 292 1.9E-99 T 22-04-2016 RM11_RS06600 e17185859a77896ffafbb088648d6c1a 247 SUPERFAMILY SSF141523 61 172 1.83E-8 T 22-04-2016 RM11_RS06600 e17185859a77896ffafbb088648d6c1a 247 PANTHER PTHR36699 45 237 1.4E-51 T 22-04-2016 RM11_RS03740 d18d5dffb91c10e07da6c52ad32822e9 182 Pfam PF06821 Serine hydrolase 8 176 1.1E-68 T 22-04-2016 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RM11_RS03740 d18d5dffb91c10e07da6c52ad32822e9 182 Gene3D G3DSA:3.40.50.1820 4 181 4.8E-49 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS03740 d18d5dffb91c10e07da6c52ad32822e9 182 SUPERFAMILY SSF53474 8 176 1.76E-34 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 461 85.398 T 22-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 Gene3D G3DSA:1.10.40.30 405 462 6.6E-23 T 22-04-2016 RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 3.6E-32 T 22-04-2016 IPR000362 Fumarate lyase family RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 3.6E-32 T 22-04-2016 IPR000362 Fumarate lyase family RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 3.6E-32 T 22-04-2016 IPR000362 Fumarate lyase family RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 3.6E-32 T 22-04-2016 IPR000362 Fumarate lyase family RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 Gene3D G3DSA:1.10.275.10 3 138 2.2E-58 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 SUPERFAMILY SSF48557 4 461 8.95E-146 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 PANTHER PTHR11444:SF1 3 461 4.8E-232 T 22-04-2016 RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 Pfam PF00206 Lyase 12 342 4.8E-109 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 Pfam PF10415 Fumarase C C-terminus 408 460 3.4E-17 T 22-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 Gene3D G3DSA:1.20.200.10 139 403 4.6E-98 T 22-04-2016 RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 5 459 2.9E-217 T 22-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS05320 4e42e45d6d10f0d8ba7e6857bc3bb36b 462 PANTHER PTHR11444 3 461 4.8E-232 T 22-04-2016 IPR000362 Fumarate lyase family RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 SUPERFAMILY SSF53738 159 257 4.71E-27 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 368 5.3E-34 T 22-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 SUPERFAMILY SSF55957 361 445 3.27E-17 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 Gene3D G3DSA:3.40.120.10 3 139 1.4E-48 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 159 255 2.3E-18 T 22-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 9.1E-12 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 176 195 9.1E-12 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 9.1E-12 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 PANTHER PTHR22573 4 455 1.8E-156 T 22-04-2016 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 443 1.2E-9 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 446 45.671 T 22-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 136 4.5E-46 T 22-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 444 7.2E-188 T 22-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 PANTHER PTHR22573:SF15 4 455 1.8E-156 T 22-04-2016 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 SUPERFAMILY SSF53738 260 368 1.33E-31 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 SUPERFAMILY SSF53738 3 167 2.83E-47 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 22-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 Gene3D G3DSA:3.40.120.10 253 361 7.1E-37 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 Gene3D G3DSA:3.40.120.10 178 252 3.7E-25 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05825 636d42e74e14b65ae4847644d86097b5 459 Gene3D G3DSA:3.30.310.50 362 443 1.0E-13 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR00418 DNA topoisomerase II family signature 534 550 9.6E-66 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR00418 DNA topoisomerase II family signature 552 569 9.6E-66 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR00418 DNA topoisomerase II family signature 75 90 9.6E-66 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR00418 DNA topoisomerase II family signature 154 168 9.6E-66 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR00418 DNA topoisomerase II family signature 319 332 9.6E-66 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR00418 DNA topoisomerase II family signature 110 123 9.6E-66 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR00418 DNA topoisomerase II family signature 468 482 9.6E-66 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR00418 DNA topoisomerase II family signature 615 631 9.6E-66 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR00418 DNA topoisomerase II family signature 572 584 9.6E-66 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 43 682 41.871 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 611 674 3.3E-24 T 22-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR01159 DNA gyrase subunit B signature 46 56 4.4E-13 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR01159 DNA gyrase subunit B signature 518 527 4.4E-13 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR01159 DNA gyrase subunit B signature 409 423 4.4E-13 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR01159 DNA gyrase subunit B signature 423 443 4.4E-13 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR01159 DNA gyrase subunit B signature 636 648 4.4E-13 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PRINTS PR01159 DNA gyrase subunit B signature 361 377 4.4E-13 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 SMART SM00387 71 217 3.5E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PANTHER PTHR10169 24 685 2.8E-194 T 22-04-2016 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 SMART SM00433 75 678 2.8E-298 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 71 216 5.9E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 44 676 1.8E-233 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 Pfam PF01751 Toprim domain 467 567 1.5E-16 T 22-04-2016 IPR006171 Toprim domain RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 Pfam PF00204 DNA gyrase B 271 439 1.2E-41 T 22-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 SUPERFAMILY SSF56719 442 675 9.94E-74 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 SUPERFAMILY SSF54211 271 440 1.35E-41 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 ProSitePatterns PS00177 DNA topoisomerase II signature. 470 478 - T 22-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 SUPERFAMILY SSF55874 46 250 6.02E-58 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 Gene3D G3DSA:3.30.230.10 270 440 5.4E-42 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 Gene3D G3DSA:3.40.50.670 452 666 1.5E-80 T 22-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 PANTHER PTHR10169:SF20 24 685 2.8E-194 T 22-04-2016 RM11_RS03325 9c8dab79e06cdfa7694b02f00e2af5bd 685 Gene3D G3DSA:3.30.565.10 46 248 5.2E-74 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 Pfam PF13188 PAS domain 223 259 1.6E-5 T 22-04-2016 IPR000014 PAS domain RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 705 811 1.3E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 Pfam PF12860 PAS fold 335 448 2.2E-12 T 22-04-2016 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 Pfam PF12860 PAS fold 463 571 1.4E-8 T 22-04-2016 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 SUPERFAMILY SSF47384 573 658 7.85E-20 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 SUPERFAMILY SSF55874 647 812 3.14E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 SMART SM00388 590 658 9.5E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 Gene3D G3DSA:3.30.450.20 322 444 3.3E-4 T 22-04-2016 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 Gene3D G3DSA:3.30.450.20 462 569 6.7E-4 T 22-04-2016 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 Pfam PF00512 His Kinase A (phospho-acceptor) domain 591 658 2.2E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 PANTHER PTHR24423 88 110 3.7E-75 T 22-04-2016 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 PANTHER PTHR24423 535 812 3.7E-75 T 22-04-2016 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 PANTHER PTHR24423 218 281 3.7E-75 T 22-04-2016 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 PRINTS PR00344 Bacterial sensor protein C-terminal signature 798 811 5.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 PRINTS PR00344 Bacterial sensor protein C-terminal signature 741 755 5.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 PRINTS PR00344 Bacterial sensor protein C-terminal signature 774 792 5.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 PRINTS PR00344 Bacterial sensor protein C-terminal signature 759 769 5.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 SMART SM00091 220 286 0.019 T 22-04-2016 IPR000014 PAS domain RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 SMART SM00091 457 524 87.0 T 22-04-2016 IPR000014 PAS domain RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 SMART SM00387 704 814 7.3E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 Gene3D G3DSA:3.30.450.20 219 297 8.2E-7 T 22-04-2016 RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 Gene3D G3DSA:3.30.565.10 644 812 2.4E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 SUPERFAMILY SSF55785 215 305 2.44E-7 T 22-04-2016 IPR000014 PAS domain RM11_RS00145 16fa69be6df65201bed514a70ae3dde5 814 Gene3D G3DSA:1.10.287.130 582 643 7.8E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 PANTHER PTHR11564:SF7 1 435 7.3E-218 T 22-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 443 31.709 T 22-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 PANTHER PTHR11564 1 435 7.3E-218 T 22-04-2016 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 SUPERFAMILY SSF52540 96 298 5.82E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 2.2E-20 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 2.6E-69 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 428 1.0E-173 T 22-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 SMART SM00382 99 301 9.9E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 Gene3D G3DSA:1.10.260.30 327 431 7.2E-35 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 SUPERFAMILY SSF47446 298 430 4.06E-43 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 SMART SM00962 100 296 1.0E-108 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 SUPERFAMILY SSF47364 1 89 1.7E-24 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 Pfam PF02978 Signal peptide binding domain 327 427 8.3E-29 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 Gene3D G3DSA:3.40.50.300 96 297 3.1E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 Gene3D G3DSA:1.20.120.140 2 89 4.9E-31 T 22-04-2016 RM11_RS06445 87df6a6fddceb4dd80faff88aa3ffe32 539 SMART SM00963 1 86 9.2E-31 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS04800 b03debc56f8503f6343e7479f8b8b17e 248 Gene3D G3DSA:3.40.50.620 1 244 1.2E-97 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS04800 b03debc56f8503f6343e7479f8b8b17e 248 PIRSF PIRSF000090 1 248 2.2E-81 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RM11_RS04800 b03debc56f8503f6343e7479f8b8b17e 248 PANTHER PTHR21294:SF8 1 243 4.6E-135 T 22-04-2016 RM11_RS04800 b03debc56f8503f6343e7479f8b8b17e 248 SMART SM00893 23 211 1.2E-64 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RM11_RS04800 b03debc56f8503f6343e7479f8b8b17e 248 PANTHER PTHR21294 1 243 4.6E-135 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RM11_RS04800 b03debc56f8503f6343e7479f8b8b17e 248 SUPERFAMILY SSF52402 1 242 3.28E-81 T 22-04-2016 RM11_RS04800 b03debc56f8503f6343e7479f8b8b17e 248 Pfam PF01012 Electron transfer flavoprotein domain 30 206 4.9E-45 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 346 501 5.5E-35 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 Gene3D G3DSA:3.40.50.10050 646 724 4.8E-23 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 267 317 2.4E-10 T 22-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 Gene3D G3DSA:2.40.30.10 747 843 6.5E-36 T 22-04-2016 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 PANTHER PTHR23115:SF184 328 673 4.7E-201 T 22-04-2016 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 PANTHER PTHR23115:SF184 699 843 4.7E-201 T 22-04-2016 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 Gene3D G3DSA:3.40.50.300 338 503 1.1E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 PANTHER PTHR23115 328 673 4.7E-201 T 22-04-2016 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 PANTHER PTHR23115 699 843 4.7E-201 T 22-04-2016 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 Pfam PF03144 Elongation factor Tu domain 2 766 833 1.1E-7 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 260 845 2.3E-237 T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 SUPERFAMILY SSF50447 747 843 7.46E-31 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 ProSitePatterns PS01176 Initiation factor 2 signature. 796 818 - T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 Pfam PF11987 Translation-initiation factor 2 630 735 4.3E-38 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 SUPERFAMILY SSF52540 336 514 1.64E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 Gene3D G3DSA:2.40.30.10 514 608 3.1E-24 T 22-04-2016 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 SUPERFAMILY SSF52156 629 752 4.18E-35 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 8 843 16.861 T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 SUPERFAMILY SSF50447 516 598 2.7E-25 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 12 47 1.8E-8 T 22-04-2016 IPR013575 Initiation factor 2 associated domain, bacterial RM11_RS01000 3364c152c3e66ae2423bde4260b78ef4 845 Pfam PF00009 Elongation factor Tu GTP binding domain 348 504 4.7E-33 T 22-04-2016 RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 PANTHER PTHR10909 100 302 4.0E-100 T 22-04-2016 RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 Gene3D G3DSA:3.40.50.1220 179 306 1.9E-55 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 PANTHER PTHR10909:SF294 100 302 4.0E-100 T 22-04-2016 RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 Gene3D G3DSA:3.40.50.620 1 177 2.0E-47 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 186 268 5.2E-33 T 22-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 PIRSF PIRSF000089 1 306 3.1E-95 T 22-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 Pfam PF01012 Electron transfer flavoprotein domain 11 166 3.4E-31 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 SMART SM00893 3 178 3.1E-37 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 SUPERFAMILY SSF52402 3 182 7.45E-44 T 22-04-2016 RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 250 276 - T 22-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site RM11_RS04805 55043defbdfb77c5ed85d5f3e292fe3a 306 SUPERFAMILY SSF52467 185 305 1.25E-43 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RM11_RS00255 db8ac94f758019598cd6f8e70286b7ad 356 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 15 79 8.8E-5 T 22-04-2016 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 RM11_RS00255 db8ac94f758019598cd6f8e70286b7ad 356 SUPERFAMILY SSF46785 13 92 2.37E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS00255 db8ac94f758019598cd6f8e70286b7ad 356 PIRSF PIRSF005485 10 356 2.3E-105 T 22-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RM11_RS00255 db8ac94f758019598cd6f8e70286b7ad 356 SUPERFAMILY SSF55781 83 355 4.91E-54 T 22-04-2016 IPR029016 GAF domain-like RM11_RS00255 db8ac94f758019598cd6f8e70286b7ad 356 Gene3D G3DSA:1.10.10.10 6 94 2.7E-34 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS00255 db8ac94f758019598cd6f8e70286b7ad 356 Gene3D G3DSA:3.30.450.40 189 355 1.6E-34 T 22-04-2016 IPR029016 GAF domain-like RM11_RS00255 db8ac94f758019598cd6f8e70286b7ad 356 PANTHER PTHR34824 1 355 9.5E-97 T 22-04-2016 RM11_RS00255 db8ac94f758019598cd6f8e70286b7ad 356 Pfam PF01628 HrcA protein C terminal domain 118 341 4.4E-55 T 22-04-2016 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 RM11_RS00255 db8ac94f758019598cd6f8e70286b7ad 356 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 14 354 7.7E-98 T 22-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RM11_RS00255 db8ac94f758019598cd6f8e70286b7ad 356 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 12 348 28.353 T 22-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RM11_RS01100 633caafcc2f16d25f7b6821b4afdef5c 243 PANTHER PTHR21485:SF4 6 242 3.1E-80 T 22-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RM11_RS01100 633caafcc2f16d25f7b6821b4afdef5c 243 PANTHER PTHR21485 6 242 3.1E-80 T 22-04-2016 RM11_RS01100 633caafcc2f16d25f7b6821b4afdef5c 243 SUPERFAMILY SSF53448 5 242 2.93E-51 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS01100 633caafcc2f16d25f7b6821b4afdef5c 243 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 3 243 33.651 T 22-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RM11_RS01100 633caafcc2f16d25f7b6821b4afdef5c 243 Gene3D G3DSA:3.90.550.10 6 242 5.9E-63 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS01100 633caafcc2f16d25f7b6821b4afdef5c 243 Pfam PF02348 Cytidylyltransferase 6 217 4.9E-44 T 22-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RM11_RS01100 633caafcc2f16d25f7b6821b4afdef5c 243 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 6 236 1.7E-60 T 22-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 Pfam PF01380 SIS domain 289 413 2.8E-23 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 Pfam PF01380 SIS domain 459 589 8.3E-28 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 607 37.509 T 22-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 Pfam PF13522 Glutamine amidotransferase domain 65 192 2.8E-22 T 22-04-2016 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 607 1.3E-228 T 22-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 SUPERFAMILY SSF56235 2 234 4.72E-73 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 Gene3D G3DSA:3.40.50.10490 444 607 4.1E-64 T 22-04-2016 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 PANTHER PTHR10937:SF0 1 607 9.0E-295 T 22-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 SUPERFAMILY SSF53697 245 607 3.58E-102 T 22-04-2016 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 Gene3D G3DSA:3.40.50.10490 244 443 1.8E-56 T 22-04-2016 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 PANTHER PTHR10937 1 607 9.0E-295 T 22-04-2016 RM11_RS03825 d3b8aa38593bbe6561105c442fed996e 607 Gene3D G3DSA:3.60.20.10 2 233 3.1E-74 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 PANTHER PTHR11615:SF115 3 322 1.1E-278 T 22-04-2016 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 PANTHER PTHR11615:SF115 361 678 1.1E-278 T 22-04-2016 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 597 1.0E-216 T 22-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 154 164 - T 22-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 Pfam PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal 640 676 2.0E-12 T 22-04-2016 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal GO:0016651|GO:0051536|GO:0055114 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 SUPERFAMILY SSF54292 1 67 1.71E-17 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 107 119 - T 22-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 SMART SM00929 92 132 2.5E-19 T 22-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 92 128 1.2E-16 T 22-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 Gene3D G3DSA:3.10.20.30 2 59 3.2E-8 T 22-04-2016 IPR012675 Beta-grasp domain RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 SUPERFAMILY SSF53706 222 629 8.64E-91 T 22-04-2016 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 SUPERFAMILY SSF54862 84 220 6.28E-37 T 22-04-2016 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 Gene3D G3DSA:3.40.50.740 280 347 8.3E-42 T 22-04-2016 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 Gene3D G3DSA:3.40.50.740 516 628 8.3E-42 T 22-04-2016 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 Gene3D G3DSA:3.40.50.740 457 476 8.3E-42 T 22-04-2016 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 Gene3D G3DSA:3.40.50.740 379 416 8.3E-42 T 22-04-2016 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 Pfam PF00384 Molybdopterin oxidoreductase 280 599 8.0E-62 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 PANTHER PTHR11615 3 322 1.1E-278 T 22-04-2016 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 PANTHER PTHR11615 361 678 1.1E-278 T 22-04-2016 RM11_RS02895 359dd42f01695381153315edf5d9ccd4 689 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 1 69 7.3E-12 T 22-04-2016 RM11_RS06360 5cc789811d20363eb13637cb707c5f6d 232 Gene3D G3DSA:1.10.1270.20 159 229 5.1E-27 T 22-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RM11_RS06360 5cc789811d20363eb13637cb707c5f6d 232 PANTHER PTHR32125 1 226 6.2E-95 T 22-04-2016 RM11_RS06360 5cc789811d20363eb13637cb707c5f6d 232 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 5 229 4.0E-81 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RM11_RS06360 5cc789811d20363eb13637cb707c5f6d 232 SUPERFAMILY SSF75217 2 229 5.17E-92 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases RM11_RS06360 5cc789811d20363eb13637cb707c5f6d 232 PIRSF PIRSF000386 1 232 3.7E-91 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RM11_RS06360 5cc789811d20363eb13637cb707c5f6d 232 PANTHER PTHR32125:SF1 1 226 6.2E-95 T 22-04-2016 RM11_RS06360 5cc789811d20363eb13637cb707c5f6d 232 Gene3D G3DSA:3.40.1280.10 3 158 5.8E-63 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RM11_RS06360 5cc789811d20363eb13637cb707c5f6d 232 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 232 100.133 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RM11_RS06360 5cc789811d20363eb13637cb707c5f6d 232 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 25 219 4.4E-54 T 22-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RM11_RS01260 db29577750a9a7421fdc6c6aa49660a5 440 PANTHER PTHR23417 136 146 1.3E-86 T 22-04-2016 RM11_RS01260 db29577750a9a7421fdc6c6aa49660a5 440 PANTHER PTHR23417 1 117 1.3E-86 T 22-04-2016 RM11_RS01260 db29577750a9a7421fdc6c6aa49660a5 440 PANTHER PTHR23417 192 434 1.3E-86 T 22-04-2016 RM11_RS01260 db29577750a9a7421fdc6c6aa49660a5 440 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 43 214 1.6E-49 T 22-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 RM11_RS01260 db29577750a9a7421fdc6c6aa49660a5 440 PANTHER PTHR23417:SF2 136 146 1.3E-86 T 22-04-2016 RM11_RS01260 db29577750a9a7421fdc6c6aa49660a5 440 PANTHER PTHR23417:SF2 1 117 1.3E-86 T 22-04-2016 RM11_RS01260 db29577750a9a7421fdc6c6aa49660a5 440 PANTHER PTHR23417:SF2 192 434 1.3E-86 T 22-04-2016 RM11_RS01260 db29577750a9a7421fdc6c6aa49660a5 440 SUPERFAMILY SSF53756 59 419 1.22E-11 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 PANTHER PTHR20856:SF20 3 243 0.0 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 PANTHER PTHR20856:SF20 756 943 0.0 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 PANTHER PTHR20856:SF20 1060 1154 0.0 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 PANTHER PTHR20856:SF20 354 739 0.0 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 PANTHER PTHR20856:SF20 1208 1372 0.0 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Pfam PF04560 RNA polymerase Rpb2, domain 7 1292 1366 1.5E-26 T 22-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:2.40.50.100 729 805 3.1E-29 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:2.40.50.150 1071 1085 1.2E-57 T 22-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:2.40.50.150 840 950 1.2E-57 T 22-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 PANTHER PTHR20856 3 243 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 PANTHER PTHR20856 756 943 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 PANTHER PTHR20856 1060 1154 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 PANTHER PTHR20856 354 739 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 PANTHER PTHR20856 1208 1372 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1089 1101 - T 22-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:2.40.270.10 1086 1268 2.8E-87 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:2.40.270.10 806 833 2.8E-87 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:3.90.1110.10 360 458 2.7E-69 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:3.90.1110.10 165 242 2.7E-69 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 19 1368 12.448 T 22-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:3.90.1100.10 459 605 9.1E-147 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:3.90.1100.10 25 163 9.1E-147 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:3.90.1100.10 673 727 9.1E-147 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 SUPERFAMILY SSF64484 17 238 0.0 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 SUPERFAMILY SSF64484 1065 1367 0.0 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 SUPERFAMILY SSF64484 357 952 0.0 T 22-04-2016 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Pfam PF00562 RNA polymerase Rpb2, domain 6 732 1290 9.0E-167 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Pfam PF10385 RNA polymerase beta subunit external 1 domain 605 670 2.8E-24 T 22-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 15 1365 0.0 T 22-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Pfam PF04561 RNA polymerase Rpb2, domain 2 362 468 1.3E-17 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Pfam PF04561 RNA polymerase Rpb2, domain 2 183 235 3.2E-6 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Gene3D G3DSA:2.30.150.10 606 670 2.3E-28 T 22-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Pfam PF04563 RNA polymerase beta subunit 33 511 4.2E-31 T 22-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03570 7bf06c306af8e10dea0bdaa90a74c931 1383 Pfam PF04565 RNA polymerase Rpb2, domain 3 527 595 7.9E-32 T 22-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS05795 96be5689eb0659f770244e4625463299 185 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 28 184 33.458 T 22-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RM11_RS05795 96be5689eb0659f770244e4625463299 185 SUPERFAMILY SSF51283 34 183 1.02E-45 T 22-04-2016 IPR029054 dUTPase-like RM11_RS05795 96be5689eb0659f770244e4625463299 185 PANTHER PTHR11241 33 185 3.5E-37 T 22-04-2016 RM11_RS05795 96be5689eb0659f770244e4625463299 185 Gene3D G3DSA:2.70.40.10 34 183 5.6E-52 T 22-04-2016 IPR029054 dUTPase-like RM11_RS05795 96be5689eb0659f770244e4625463299 185 TIGRFAM TIGR00576 dut: dUTP diphosphatase 34 183 4.8E-47 T 22-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RM11_RS05795 96be5689eb0659f770244e4625463299 185 Pfam PF00692 dUTPase 42 182 6.0E-27 T 22-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 RM11_RS03895 787b23ee3e234131fc06f0e160ac38e8 404 Gene3D G3DSA:3.40.718.10 3 402 2.1E-178 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RM11_RS03895 787b23ee3e234131fc06f0e160ac38e8 404 SUPERFAMILY SSF53659 2 402 4.86E-154 T 22-04-2016 RM11_RS03895 787b23ee3e234131fc06f0e160ac38e8 404 TIGRFAM TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 3 402 7.6E-215 T 22-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RM11_RS03895 787b23ee3e234131fc06f0e160ac38e8 404 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 269 288 - T 22-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RM11_RS03895 787b23ee3e234131fc06f0e160ac38e8 404 PIRSF PIRSF000108 1 404 9.8E-227 T 22-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RM11_RS03895 787b23ee3e234131fc06f0e160ac38e8 404 PANTHER PTHR11822 3 403 0.0 T 22-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RM11_RS03895 787b23ee3e234131fc06f0e160ac38e8 404 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 394 3.5E-73 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RM11_RS03895 787b23ee3e234131fc06f0e160ac38e8 404 SMART SM01329 9 394 1.0E-127 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RM11_RS05965 272eb998d8f005d8063af1636819a292 343 PANTHER PTHR11627 5 341 4.3E-177 T 22-04-2016 RM11_RS05965 272eb998d8f005d8063af1636819a292 343 Gene3D G3DSA:3.20.20.70 3 337 4.0E-146 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS05965 272eb998d8f005d8063af1636819a292 343 PANTHER PTHR11627:SF20 5 341 4.3E-177 T 22-04-2016 RM11_RS05965 272eb998d8f005d8063af1636819a292 343 ProSitePatterns PS00158 Fructose-bisphosphate aldolase class-I active site. 215 225 - T 22-04-2016 IPR029768 Fructose-bisphosphate aldolase class-I active site KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS05965 272eb998d8f005d8063af1636819a292 343 SUPERFAMILY SSF51569 5 340 1.36E-127 T 22-04-2016 RM11_RS05965 272eb998d8f005d8063af1636819a292 343 Pfam PF00274 Fructose-bisphosphate aldolase class-I 5 340 1.1E-137 T 22-04-2016 IPR000741 Fructose-bisphosphate aldolase, class-I GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 SUPERFAMILY SSF52402 14 156 4.74E-42 T 22-04-2016 RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 SUPERFAMILY SSF52402 194 242 4.74E-42 T 22-04-2016 RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 Gene3D G3DSA:3.40.50.620 175 214 7.3E-18 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 Gene3D G3DSA:3.40.50.620 16 135 7.3E-18 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 PANTHER PTHR11807 191 239 6.7E-41 T 22-04-2016 RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 Pfam PF01171 PP-loop family 20 237 7.4E-44 T 22-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 PANTHER PTHR11807 19 157 6.7E-41 T 22-04-2016 RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 PANTHER PTHR11807:SF2 19 157 6.7E-41 T 22-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 20 143 5.9E-31 T 22-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 12 344 19.776 T 22-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RM11_RS05835 053b2b5eed50efb0737c2c466c0f9711 476 PANTHER PTHR11807:SF2 191 239 6.7E-41 T 22-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RM11_RS04765 f4ba579ad1ed67f0842c55c175ea76a3 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 442 1.3E-79 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain RM11_RS04765 f4ba579ad1ed67f0842c55c175ea76a3 545 PANTHER PTHR30290 33 535 8.2E-97 T 22-04-2016 RM11_RS04765 f4ba579ad1ed67f0842c55c175ea76a3 545 SUPERFAMILY SSF53850 38 534 6.27E-109 T 22-04-2016 RM11_RS04765 f4ba579ad1ed67f0842c55c175ea76a3 545 PIRSF PIRSF002741 29 545 4.2E-79 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RM11_RS04765 f4ba579ad1ed67f0842c55c175ea76a3 545 Gene3D G3DSA:3.40.190.10 162 307 1.6E-36 T 22-04-2016 RM11_RS04765 f4ba579ad1ed67f0842c55c175ea76a3 545 Gene3D G3DSA:3.90.76.10 45 161 5.2E-22 T 22-04-2016 RM11_RS04765 f4ba579ad1ed67f0842c55c175ea76a3 545 Gene3D G3DSA:3.10.105.10 308 511 3.0E-44 T 22-04-2016 RM11_RS04000 326f51f91af19c8e6f50d5205170f299 143 Gene3D G3DSA:3.90.1030.10 1 117 1.9E-51 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04000 326f51f91af19c8e6f50d5205170f299 143 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04000 326f51f91af19c8e6f50d5205170f299 143 PANTHER PTHR14413:SF5 1 123 5.8E-69 T 22-04-2016 RM11_RS04000 326f51f91af19c8e6f50d5205170f299 143 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 1.0E-43 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04000 326f51f91af19c8e6f50d5205170f299 143 SUPERFAMILY SSF64263 1 119 2.62E-51 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04000 326f51f91af19c8e6f50d5205170f299 143 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.832 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04000 326f51f91af19c8e6f50d5205170f299 143 PANTHER PTHR14413 1 123 5.8E-69 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04000 326f51f91af19c8e6f50d5205170f299 143 Pfam PF01196 Ribosomal protein L17 20 116 7.3E-37 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 SMART SM00864 16 208 1.2E-110 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 PRINTS PR00423 Cell division protein FtsZ signature 101 121 1.0E-48 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 PRINTS PR00423 Cell division protein FtsZ signature 215 236 1.0E-48 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 PRINTS PR00423 Cell division protein FtsZ signature 129 150 1.0E-48 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 PRINTS PR00423 Cell division protein FtsZ signature 192 214 1.0E-48 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 TIGRFAM TIGR03483 FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension 475 589 4.6E-45 T 22-04-2016 IPR017844 Cell division protein FtsZ, C-terminal extension GO:0000910|GO:0005525|GO:0005737 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 176 2.4E-40 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 SMART SM00865 210 328 3.4E-56 T 22-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 ProSitePatterns PS01135 FtsZ protein signature 2. 100 121 - T 22-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 PANTHER PTHR30314:SF3 1 348 9.8E-172 T 22-04-2016 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 PANTHER PTHR30314 1 348 9.8E-172 T 22-04-2016 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 Gene3D G3DSA:3.40.50.1440 16 217 7.4E-94 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 12 377 36.984 T 22-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 SUPERFAMILY SSF55307 208 322 2.75E-41 T 22-04-2016 IPR008280 Tubulin/FtsZ, C-terminal RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 SUPERFAMILY SSF52490 15 211 1.03E-68 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 Pfam PF12327 FtsZ family, C-terminal domain 225 320 8.9E-36 T 22-04-2016 IPR024757 Cell division protein FtsZ, C-terminal RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 14 329 7.2E-122 T 22-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 ProSitePatterns PS01134 FtsZ protein signature 1. 47 81 - T 22-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RM11_RS04395 7cb6746cb11f09fbc309b387706c0dae 589 Gene3D G3DSA:3.30.1330.20 218 322 3.5E-47 T 22-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 16 538 42.475 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 PANTHER PTHR11692 14 538 2.8E-279 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 PIRSF PIRSF000414 12 538 7.1E-203 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 Gene3D G3DSA:3.40.50.1380 14 200 2.4E-75 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 SUPERFAMILY SSF52335 16 206 1.31E-63 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 Pfam PF02142 MGS-like domain 28 141 2.4E-24 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 SMART SM00798 147 463 4.1E-193 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 SUPERFAMILY SSF53927 224 538 1.1E-124 T 22-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 PANTHER PTHR11692:SF2 14 538 2.8E-279 T 22-04-2016 RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 Gene3D G3DSA:3.40.140.20 381 528 5.6E-57 T 22-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 SMART SM00851 28 142 1.5E-46 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 17 538 2.0E-195 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 Pfam PF01808 AICARFT/IMPCHase bienzyme 147 462 1.6E-112 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RM11_RS06410 80e2d6051dfeb03593e8706d24da0ee2 538 Gene3D G3DSA:3.40.140.20 254 370 3.1E-45 T 22-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RM11_RS02975 83b520296aab25ba201fc07722c0df45 203 Pfam PF06776 Invasion associated locus B (IalB) protein 34 163 9.8E-31 T 22-04-2016 IPR010642 Invasion protein B RM11_RS06090 75259637677baee068e89d93159aa67d 536 SMART SM00382 200 389 6.1E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06090 75259637677baee068e89d93159aa67d 536 PIRSF PIRSF039072 1 536 1.4E-281 T 22-04-2016 RM11_RS06090 75259637677baee068e89d93159aa67d 536 SUPERFAMILY SSF47917 415 529 4.19E-52 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06090 75259637677baee068e89d93159aa67d 536 Hamap MF_01347 ATP synthase subunit beta [atpB]. 60 530 56.438 T 22-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06090 75259637677baee068e89d93159aa67d 536 Gene3D G3DSA:3.40.50.300 136 414 3.4E-109 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06090 75259637677baee068e89d93159aa67d 536 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 62 530 2.5E-247 T 22-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06090 75259637677baee068e89d93159aa67d 536 Gene3D G3DSA:1.10.1140.10 415 533 2.4E-52 T 22-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06090 75259637677baee068e89d93159aa67d 536 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 65 131 1.9E-22 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06090 75259637677baee068e89d93159aa67d 536 SUPERFAMILY SSF52540 135 418 9.96E-89 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06090 75259637677baee068e89d93159aa67d 536 PANTHER PTHR15184:SF44 39 533 0.0 T 22-04-2016 RM11_RS06090 75259637677baee068e89d93159aa67d 536 PANTHER PTHR15184 39 533 0.0 T 22-04-2016 RM11_RS06090 75259637677baee068e89d93159aa67d 536 Gene3D G3DSA:2.40.10.170 53 132 1.0E-34 T 22-04-2016 RM11_RS06090 75259637677baee068e89d93159aa67d 536 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 188 412 6.4E-61 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06090 75259637677baee068e89d93159aa67d 536 SUPERFAMILY SSF50615 59 131 6.54E-24 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06090 75259637677baee068e89d93159aa67d 536 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 403 412 - T 22-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 223 2.5E-98 T 22-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 Hamap MF_01570 Proline--tRNA ligase [proS]. 1 440 60.903 T 22-04-2016 IPR023716 Proline-tRNA ligase, class IIa, type 2 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 SUPERFAMILY SSF52954 336 439 1.16E-27 T 22-04-2016 IPR004154 Anticodon-binding RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.4E-14 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.4E-14 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.4E-14 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.4E-14 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 PANTHER PTHR11451 243 438 6.7E-133 T 22-04-2016 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 PANTHER PTHR11451 4 216 6.7E-133 T 22-04-2016 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 330 2.2E-35 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 Gene3D G3DSA:3.30.930.10 264 341 8.0E-92 T 22-04-2016 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 Gene3D G3DSA:3.30.930.10 5 204 8.0E-92 T 22-04-2016 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 Gene3D G3DSA:3.40.50.800 343 436 6.9E-24 T 22-04-2016 IPR004154 Anticodon-binding RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 PANTHER PTHR11451:SF3 243 438 6.7E-133 T 22-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 PANTHER PTHR11451:SF3 4 216 6.7E-133 T 22-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 Pfam PF03129 Anticodon binding domain 350 436 9.9E-18 T 22-04-2016 IPR004154 Anticodon-binding RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 SUPERFAMILY SSF55681 10 236 4.58E-90 T 22-04-2016 RM11_RS02945 bb77be526e9abfa0037af50199e76d85 441 SUPERFAMILY SSF55681 280 350 4.58E-90 T 22-04-2016 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 SUPERFAMILY SSF103473 12 396 1.7E-63 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 Gene3D G3DSA:1.20.1250.20 221 396 2.9E-18 T 22-04-2016 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 Gene3D G3DSA:1.20.1250.20 13 195 8.8E-37 T 22-04-2016 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 PRINTS PR01035 Tetracycline resistance protein signature 113 134 1.6E-38 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 PRINTS PR01035 Tetracycline resistance protein signature 86 110 1.6E-38 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 PRINTS PR01035 Tetracycline resistance protein signature 259 279 1.6E-38 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 PRINTS PR01035 Tetracycline resistance protein signature 171 191 1.6E-38 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 PRINTS PR01035 Tetracycline resistance protein signature 312 332 1.6E-38 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 PRINTS PR01035 Tetracycline resistance protein signature 347 370 1.6E-38 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 PRINTS PR01035 Tetracycline resistance protein signature 143 165 1.6E-38 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 PRINTS PR01035 Tetracycline resistance protein signature 24 40 1.6E-38 T 22-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 PANTHER PTHR23504 1 404 5.2E-108 T 22-04-2016 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 Pfam PF07690 Major Facilitator Superfamily 18 363 1.2E-45 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RM11_RS04590 034b33312910d4277b82c4ea4c04a599 406 PANTHER PTHR23504:SF18 1 404 5.2E-108 T 22-04-2016 RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 PANTHER PTHR11773 2 927 0.0 T 22-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 9 924 0.0 T 22-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 1 930 23.623 T 22-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 Gene3D G3DSA:3.40.640.10 74 286 1.4E-12 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 SUPERFAMILY SSF53383 903 926 2.07E-100 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 SUPERFAMILY SSF53383 9 425 2.42E-96 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 Gene3D G3DSA:3.40.640.10 480 748 5.3E-40 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 Pfam PF02347 Glycine cleavage system P-protein 9 428 4.1E-155 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 Pfam PF02347 Glycine cleavage system P-protein 459 713 1.0E-9 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 SUPERFAMILY SSF53383 449 859 2.07E-100 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RM11_RS05005 38ac397d60a4d1c8a2ca6fc5f2ae4bb2 931 PANTHER PTHR11773:SF1 2 927 0.0 T 22-04-2016 RM11_RS01935 eaa6d9220d056029bc309915dd2a256a 277 SUPERFAMILY SSF47090 217 271 5.49E-10 T 22-04-2016 IPR002477 Peptidoglycan binding-like RM11_RS01935 eaa6d9220d056029bc309915dd2a256a 277 Gene3D G3DSA:1.10.101.10 127 164 1.9E-4 T 22-04-2016 IPR002477 Peptidoglycan binding-like RM11_RS01935 eaa6d9220d056029bc309915dd2a256a 277 Gene3D G3DSA:1.10.101.10 222 271 7.6E-7 T 22-04-2016 IPR002477 Peptidoglycan binding-like RM11_RS01935 eaa6d9220d056029bc309915dd2a256a 277 Pfam PF01471 Putative peptidoglycan binding domain 217 270 2.0E-10 T 22-04-2016 IPR002477 Peptidoglycan binding-like RM11_RS01935 eaa6d9220d056029bc309915dd2a256a 277 SUPERFAMILY SSF47090 126 169 9.16E-6 T 22-04-2016 IPR002477 Peptidoglycan binding-like RM11_RS04170 b1fecc00332e791991340ef8f58a24fd 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 52 235 1.7E-14 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04170 b1fecc00332e791991340ef8f58a24fd 238 Gene3D G3DSA:1.10.3720.10 33 234 1.4E-40 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04170 b1fecc00332e791991340ef8f58a24fd 238 PANTHER PTHR30614 33 238 1.2E-81 T 22-04-2016 RM11_RS04170 b1fecc00332e791991340ef8f58a24fd 238 SUPERFAMILY SSF161098 32 221 9.81E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04170 b1fecc00332e791991340ef8f58a24fd 238 PANTHER PTHR30614:SF1 33 238 1.2E-81 T 22-04-2016 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM GO:0006865|GO:0016021|GO:0043190 RM11_RS04170 b1fecc00332e791991340ef8f58a24fd 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 33 129 4.3E-21 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RM11_RS01080 86e50f7d84a1e5c141d31c79f7f27abe 108 Gene3D G3DSA:3.30.1310.10 1 107 2.2E-39 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RM11_RS01080 86e50f7d84a1e5c141d31c79f7f27abe 108 SUPERFAMILY SSF82607 8 101 2.75E-29 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RM11_RS01080 86e50f7d84a1e5c141d31c79f7f27abe 108 PANTHER PTHR33449:SF1 1 108 1.6E-36 T 22-04-2016 RM11_RS01080 86e50f7d84a1e5c141d31c79f7f27abe 108 PIRSF PIRSF004555 1 107 6.1E-33 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RM11_RS01080 86e50f7d84a1e5c141d31c79f7f27abe 108 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 2 96 20.668 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RM11_RS01080 86e50f7d84a1e5c141d31c79f7f27abe 108 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 102 2.9E-26 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RM11_RS01080 86e50f7d84a1e5c141d31c79f7f27abe 108 PANTHER PTHR33449 1 108 1.6E-36 T 22-04-2016 RM11_RS01080 86e50f7d84a1e5c141d31c79f7f27abe 108 Pfam PF02575 YbaB/EbfC DNA-binding family 8 97 2.2E-30 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RM11_RS01570 52bf966e4c6a55f9a99e368de5f074d5 76 SUPERFAMILY SSF81333 2 75 3.92E-17 T 22-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RM11_RS01570 52bf966e4c6a55f9a99e368de5f074d5 76 PRINTS PR00124 ATP synthase C subunit signature 31 46 6.0E-24 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RM11_RS01570 52bf966e4c6a55f9a99e368de5f074d5 76 PRINTS PR00124 ATP synthase C subunit signature 10 29 6.0E-24 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RM11_RS01570 52bf966e4c6a55f9a99e368de5f074d5 76 PRINTS PR00124 ATP synthase C subunit signature 48 73 6.0E-24 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RM11_RS01570 52bf966e4c6a55f9a99e368de5f074d5 76 Pfam PF00137 ATP synthase subunit C 10 72 1.8E-12 T 22-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RM11_RS01570 52bf966e4c6a55f9a99e368de5f074d5 76 Gene3D G3DSA:1.20.20.10 7 74 1.1E-19 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RM11_RS01570 52bf966e4c6a55f9a99e368de5f074d5 76 PANTHER PTHR10031 1 76 1.0E-21 T 22-04-2016 RM11_RS01570 52bf966e4c6a55f9a99e368de5f074d5 76 Hamap MF_01396 ATP synthase subunit c [atpH]. 8 75 13.195 T 22-04-2016 RM11_RS04360 b0a9467762b299e100614deeb6545464 193 Pfam PF02630 SCO1/SenC 26 164 7.1E-35 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC RM11_RS04360 b0a9467762b299e100614deeb6545464 193 Gene3D G3DSA:3.40.30.10 10 182 1.4E-49 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS04360 b0a9467762b299e100614deeb6545464 193 SUPERFAMILY SSF52833 30 179 8.05E-42 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 842 906 5.4E-14 T 22-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 Gene3D G3DSA:3.40.50.620 4 196 2.1E-149 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 Gene3D G3DSA:3.40.50.620 368 592 2.1E-149 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 SUPERFAMILY SSF47323 607 857 3.36E-57 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 SUPERFAMILY SSF50677 194 369 2.88E-50 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PANTHER PTHR11946:SF5 337 820 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PANTHER PTHR11946:SF5 2 318 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PANTHER PTHR11946:SF5 838 900 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 SUPERFAMILY SSF52374 368 604 4.9E-142 T 22-04-2016 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 SUPERFAMILY SSF52374 3 195 4.9E-142 T 22-04-2016 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 Pfam PF08264 Anticodon-binding domain of tRNA 636 781 2.5E-40 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PANTHER PTHR11946 337 820 0.0 T 22-04-2016 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PANTHER PTHR11946 2 318 0.0 T 22-04-2016 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PANTHER PTHR11946 838 900 0.0 T 22-04-2016 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 Gene3D G3DSA:3.90.740.10 197 347 1.3E-38 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 TIGRFAM TIGR00422 valS: valine--tRNA ligase 3 888 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 Gene3D G3DSA:1.10.287.380 835 907 1.2E-10 T 22-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 45 56 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 Gene3D G3DSA:1.10.730.10 594 776 1.4E-59 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 SUPERFAMILY SSF46589 842 906 6.28E-13 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PRINTS PR00986 Valyl-tRNA synthetase signature 373 386 3.2E-36 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PRINTS PR00986 Valyl-tRNA synthetase signature 38 49 3.2E-36 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PRINTS PR00986 Valyl-tRNA synthetase signature 475 496 3.2E-36 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PRINTS PR00986 Valyl-tRNA synthetase signature 506 524 3.2E-36 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 PRINTS PR00986 Valyl-tRNA synthetase signature 240 257 3.2E-36 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 Hamap MF_02004 Valine--tRNA ligase [valS]. 2 907 15.458 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RM11_RS04180 d385ff575af9c7dfb8753026bb380a18 907 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 594 3.0E-199 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS00090 fd16040c0ae6fcec649df731c1c9ff0b 154 SUPERFAMILY SSF55804 1 145 9.55E-44 T 22-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 RM11_RS00090 fd16040c0ae6fcec649df731c1c9ff0b 154 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RM11_RS00090 fd16040c0ae6fcec649df731c1c9ff0b 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 146 2.1E-35 T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RM11_RS00090 fd16040c0ae6fcec649df731c1c9ff0b 154 PANTHER PTHR30505:SF6 1 154 1.5E-55 T 22-04-2016 RM11_RS00090 fd16040c0ae6fcec649df731c1c9ff0b 154 PANTHER PTHR30505 1 154 1.5E-55 T 22-04-2016 RM11_RS00090 fd16040c0ae6fcec649df731c1c9ff0b 154 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 3 145 2.2E-48 T 22-04-2016 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RM11_RS00090 fd16040c0ae6fcec649df731c1c9ff0b 154 Gene3D G3DSA:3.40.930.10 1 148 4.9E-48 T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 10 384 2.2E-98 T 22-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 10 32 1.9E-21 T 22-04-2016 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 1.9E-21 T 22-04-2016 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 1.9E-21 T 22-04-2016 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 1.9E-21 T 22-04-2016 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 Pfam PF01494 FAD binding domain 10 335 1.7E-26 T 22-04-2016 IPR002938 FAD-binding domain GO:0071949 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 PANTHER PTHR13789:SF5 4 384 4.5E-82 T 22-04-2016 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 PANTHER PTHR13789 4 384 4.5E-82 T 22-04-2016 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 SUPERFAMILY SSF51905 267 383 7.41E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 SUPERFAMILY SSF51905 9 177 7.41E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 Gene3D G3DSA:3.50.50.60 268 341 2.8E-35 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03055 4b33ed1e82b336f650546e8bea54cbf5 408 Gene3D G3DSA:3.50.50.60 8 182 2.8E-35 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 2.8E-46 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 1.8E-36 T 22-04-2016 IPR027486 Ribosomal protein S10 domain RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 SMART SM01403 7 101 1.0E-58 T 22-04-2016 IPR027486 Ribosomal protein S10 domain RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 PANTHER PTHR11700 4 102 2.0E-53 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 SUPERFAMILY SSF54999 6 102 3.27E-39 T 22-04-2016 IPR027486 Ribosomal protein S10 domain RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 Gene3D G3DSA:3.30.70.600 4 102 1.1E-44 T 22-04-2016 IPR027486 Ribosomal protein S10 domain RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 22-04-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.581 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 9.2E-19 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 9.2E-19 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RM11_RS04130 2cdf109482496b2894f0d38cb2ccbd5f 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 9.2E-19 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RM11_RS01075 4d71dd9ae2b9695db0b7d5d5b8ee327e 201 Pfam PF02132 RecR protein 44 81 9.4E-15 T 22-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger RM11_RS01075 4d71dd9ae2b9695db0b7d5d5b8ee327e 201 SUPERFAMILY SSF111304 8 201 3.01E-69 T 22-04-2016 IPR023627 Recombination protein RecR RM11_RS01075 4d71dd9ae2b9695db0b7d5d5b8ee327e 201 PANTHER PTHR30446:SF0 4 201 1.2E-92 T 22-04-2016 RM11_RS01075 4d71dd9ae2b9695db0b7d5d5b8ee327e 201 TIGRFAM TIGR00615 recR: recombination protein RecR 8 198 2.7E-64 T 22-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RM11_RS01075 4d71dd9ae2b9695db0b7d5d5b8ee327e 201 Pfam PF13662 Toprim domain 84 174 4.0E-24 T 22-04-2016 IPR006171 Toprim domain RM11_RS01075 4d71dd9ae2b9695db0b7d5d5b8ee327e 201 PANTHER PTHR30446 4 201 1.2E-92 T 22-04-2016 RM11_RS01075 4d71dd9ae2b9695db0b7d5d5b8ee327e 201 ProSitePatterns PS01300 RecR protein signature. 60 81 - T 22-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 RM11_RS01075 4d71dd9ae2b9695db0b7d5d5b8ee327e 201 SMART SM00493 83 168 0.0026 T 22-04-2016 IPR006171 Toprim domain RM11_RS01075 4d71dd9ae2b9695db0b7d5d5b8ee327e 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 201 93.628 T 22-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RM11_RS02540 100c15cec48119c3de4a1e7fab7853f6 320 TIGRFAM TIGR00510 lipA: lipoyl synthase 19 306 2.9E-113 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RM11_RS02540 100c15cec48119c3de4a1e7fab7853f6 320 SMART SM00729 75 282 2.9E-11 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RM11_RS02540 100c15cec48119c3de4a1e7fab7853f6 320 Pfam PF04055 Radical SAM superfamily 81 241 6.6E-13 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RM11_RS02540 100c15cec48119c3de4a1e7fab7853f6 320 Gene3D G3DSA:3.20.20.70 45 311 4.3E-64 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS02540 100c15cec48119c3de4a1e7fab7853f6 320 PIRSF PIRSF005963 3 320 1.3E-129 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RM11_RS02540 100c15cec48119c3de4a1e7fab7853f6 320 SUPERFAMILY SSF102114 40 302 7.72E-60 T 22-04-2016 RM11_RS02540 100c15cec48119c3de4a1e7fab7853f6 320 Hamap MF_00206 Lipoyl synthase [lipA]. 1 313 148.125 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RM11_RS02540 100c15cec48119c3de4a1e7fab7853f6 320 PANTHER PTHR10949 26 320 1.5E-153 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 Gene3D G3DSA:3.40.50.300 322 504 4.8E-32 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 Gene3D G3DSA:1.10.8.60 505 588 5.1E-30 T 22-04-2016 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 Gene3D G3DSA:3.30.230.10 595 775 1.1E-71 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 SMART SM00382 353 497 7.8E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 SMART SM00464 15 207 3.3E-77 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 573 776 2.6E-96 T 22-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 SUPERFAMILY SSF88697 17 206 5.22E-47 T 22-04-2016 IPR015947 PUA-like domain RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 17 206 2.0E-42 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 PANTHER PTHR10046:SF43 18 780 0.0 T 22-04-2016 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 SUPERFAMILY SSF52540 321 592 1.25E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 PANTHER PTHR10046 18 780 0.0 T 22-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 SUPERFAMILY SSF54211 599 774 1.59E-56 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 357 493 3.6E-20 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 707 726 4.3E-56 T 22-04-2016 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 361 380 4.3E-56 T 22-04-2016 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 599 615 4.3E-56 T 22-04-2016 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 677 696 4.3E-56 T 22-04-2016 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 730 748 4.3E-56 T 22-04-2016 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 TIGRFAM TIGR00763 lon: endopeptidase La 18 775 4.7E-299 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 PIRSF PIRSF001174 3 779 0.0 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 Hamap MF_01973 Lon protease [lon]. 16 776 70.276 T 22-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 RM11_RS02595 d44aeebac38e9e9d6b8f262b468ee423 807 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 680 688 - T 22-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 RM11_RS05100 6f57ad95b46ab53303a3b9563cf26166 310 PANTHER PTHR30532:SF4 1 305 3.5E-86 T 22-04-2016 RM11_RS05100 6f57ad95b46ab53303a3b9563cf26166 310 Gene3D G3DSA:3.40.50.1980 29 155 1.2E-29 T 22-04-2016 RM11_RS05100 6f57ad95b46ab53303a3b9563cf26166 310 PANTHER PTHR30532 1 305 3.5E-86 T 22-04-2016 RM11_RS05100 6f57ad95b46ab53303a3b9563cf26166 310 Pfam PF01497 Periplasmic binding protein 56 282 2.7E-32 T 22-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RM11_RS05100 6f57ad95b46ab53303a3b9563cf26166 310 Gene3D G3DSA:3.40.50.1980 156 306 6.5E-32 T 22-04-2016 RM11_RS05100 6f57ad95b46ab53303a3b9563cf26166 310 SUPERFAMILY SSF53807 27 293 1.3E-65 T 22-04-2016 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 35 680 3.4E-178 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 PANTHER PTHR11946 12 260 0.0 T 22-04-2016 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 PANTHER PTHR11946 293 907 0.0 T 22-04-2016 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 64 75 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 Gene3D G3DSA:3.40.50.620 23 214 9.8E-128 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 Gene3D G3DSA:3.40.50.620 440 679 9.8E-128 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 PANTHER PTHR11946:SF11 12 260 0.0 T 22-04-2016 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 PANTHER PTHR11946:SF11 293 907 0.0 T 22-04-2016 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 Gene3D G3DSA:3.90.740.10 215 426 3.3E-39 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 SUPERFAMILY SSF47323 693 965 3.36E-54 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 SUPERFAMILY SSF52374 440 687 1.15E-125 T 22-04-2016 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 SUPERFAMILY SSF52374 8 211 1.15E-125 T 22-04-2016 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 SUPERFAMILY SSF50677 212 440 5.86E-35 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 Gene3D G3DSA:1.10.730.10 683 860 2.9E-33 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 8 963 19.039 T 22-04-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 Pfam PF08264 Anticodon-binding domain of tRNA 725 871 2.8E-22 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 21 873 1.6E-235 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 602 611 1.4E-21 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 568 581 1.4E-21 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 57 68 1.4E-21 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RM11_RS01205 27e59099350cb7c35ac2af063ffde65c 971 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 239 262 1.4E-21 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RM11_RS02820 775ea8ad2aa5b26b59466f5d9eadf00a 206 PANTHER PTHR11109 20 206 2.0E-102 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RM11_RS02820 775ea8ad2aa5b26b59466f5d9eadf00a 206 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 20 203 40.272 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RM11_RS02820 775ea8ad2aa5b26b59466f5d9eadf00a 206 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 82 98 - T 22-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RM11_RS02820 775ea8ad2aa5b26b59466f5d9eadf00a 206 SUPERFAMILY SSF55620 4 203 5.63E-79 T 22-04-2016 RM11_RS02820 775ea8ad2aa5b26b59466f5d9eadf00a 206 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 25 204 2.0E-67 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RM11_RS02820 775ea8ad2aa5b26b59466f5d9eadf00a 206 Gene3D G3DSA:3.30.1130.10 78 203 7.8E-56 T 22-04-2016 RM11_RS02820 775ea8ad2aa5b26b59466f5d9eadf00a 206 Gene3D G3DSA:1.10.286.10 20 70 2.8E-23 T 22-04-2016 RM11_RS02820 775ea8ad2aa5b26b59466f5d9eadf00a 206 Pfam PF01227 GTP cyclohydrolase I 25 202 1.6E-76 T 22-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 22-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 SUPERFAMILY SSF54913 1 112 1.42E-43 T 22-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 PRINTS PR00340 P-II protein signature 83 103 4.2E-41 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 PRINTS PR00340 P-II protein signature 23 41 4.2E-41 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 PRINTS PR00340 P-II protein signature 2 17 4.2E-41 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 PRINTS PR00340 P-II protein signature 52 75 4.2E-41 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.4E-41 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 PIRSF PIRSF039144 1 112 1.9E-50 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 Gene3D G3DSA:3.30.70.120 1 112 3.1E-48 T 22-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 SMART SM00938 4 105 1.9E-62 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RM11_RS03950 37c331b5e26e5e87f7a7b476cf16e342 112 PANTHER PTHR30115 1 112 7.5E-59 T 22-04-2016 RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 SUPERFAMILY SSF57783 18 98 1.87E-6 T 22-04-2016 RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 SUPERFAMILY SSF56731 399 513 1.31E-30 T 22-04-2016 RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 PANTHER PTHR12873 772 799 4.3E-43 T 22-04-2016 IPR027032 Twinkle-like protein GO:0003697|GO:0043139 RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 PANTHER PTHR12873 412 752 4.3E-43 T 22-04-2016 IPR027032 Twinkle-like protein GO:0003697|GO:0043139 RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 Pfam PF13155 Toprim-like 416 503 3.6E-10 T 22-04-2016 RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 Gene3D G3DSA:3.90.580.10 4 94 6.7E-6 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 Gene3D G3DSA:3.40.1360.10 399 522 8.2E-28 T 22-04-2016 RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 SUPERFAMILY SSF52540 553 793 8.86E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 SMART SM00493 413 489 0.0022 T 22-04-2016 IPR006171 Toprim domain RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 Pfam PF13481 AAA domain 563 715 1.0E-6 T 22-04-2016 RM11_RS05695 1023ba647412ffabf024c0a133e7b77f 835 Gene3D G3DSA:3.40.50.300 555 798 9.5E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02425 343bbf94d237310af44105e848afd81e 280 PANTHER PTHR37426 1 280 1.6E-110 T 22-04-2016 RM11_RS02425 343bbf94d237310af44105e848afd81e 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 269 38.056 T 22-04-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RM11_RS02425 343bbf94d237310af44105e848afd81e 280 PANTHER PTHR37426:SF1 1 280 1.6E-110 T 22-04-2016 RM11_RS02425 343bbf94d237310af44105e848afd81e 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 280 9.3E-87 T 22-04-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RM11_RS02425 343bbf94d237310af44105e848afd81e 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 244 250 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RM11_RS02425 343bbf94d237310af44105e848afd81e 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 164 170 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RM11_RS02425 343bbf94d237310af44105e848afd81e 280 Gene3D G3DSA:3.40.50.150 1 279 1.8E-102 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS02425 343bbf94d237310af44105e848afd81e 280 SUPERFAMILY SSF53335 8 279 3.27E-86 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 125 140 - T 22-04-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 SMART SM01400 1 117 1.7E-80 T 22-04-2016 RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 Gene3D G3DSA:3.40.50.2020 1 156 1.2E-72 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 PANTHER PTHR10210 1 309 1.0E-175 T 22-04-2016 RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 Gene3D G3DSA:3.40.50.2020 157 283 9.8E-48 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 1 117 4.0E-50 T 22-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 1 310 48.06 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 SUPERFAMILY SSF53271 66 299 2.26E-62 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 PANTHER PTHR10210:SF41 1 309 1.0E-175 T 22-04-2016 RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 Pfam PF14572 Phosphoribosyl synthetase-associated domain 198 309 1.1E-21 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RM11_RS01695 83de9e5b926e362f5e662d02e5ff5cc0 310 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 1 309 5.3E-117 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RM11_RS04415 e1da54396c94be323639872c793ae936 322 SUPERFAMILY SSF56194 210 315 8.24E-36 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04415 e1da54396c94be323639872c793ae936 322 Gene3D G3DSA:3.30.465.10 106 237 4.0E-29 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RM11_RS04415 e1da54396c94be323639872c793ae936 322 PANTHER PTHR21071 10 317 2.0E-98 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04415 e1da54396c94be323639872c793ae936 322 SUPERFAMILY SSF56176 23 203 2.24E-33 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RM11_RS04415 e1da54396c94be323639872c793ae936 322 PANTHER PTHR21071:SF4 10 317 2.0E-98 T 22-04-2016 RM11_RS04415 e1da54396c94be323639872c793ae936 322 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 211 308 1.5E-23 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04415 e1da54396c94be323639872c793ae936 322 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 322 89.724 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04415 e1da54396c94be323639872c793ae936 322 Pfam PF01565 FAD binding domain 47 174 4.8E-13 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RM11_RS04415 e1da54396c94be323639872c793ae936 322 Gene3D G3DSA:3.30.43.10 12 94 1.2E-15 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RM11_RS04415 e1da54396c94be323639872c793ae936 322 Gene3D G3DSA:3.90.78.10 238 315 6.7E-28 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 Pfam PF03797 Autotransporter beta-domain 605 850 7.4E-36 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 307 867 1.1E-56 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 SUPERFAMILY SSF103515 599 867 5.89E-40 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 PRINTS PR01484 Pertactin virulence factor family signature 822 847 4.9E-5 T 22-04-2016 IPR003991 Pertactin virulence factor family GO:0007155 RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 PRINTS PR01484 Pertactin virulence factor family signature 847 867 4.9E-5 T 22-04-2016 IPR003991 Pertactin virulence factor family GO:0007155 RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 PRINTS PR01484 Pertactin virulence factor family signature 783 804 4.9E-5 T 22-04-2016 IPR003991 Pertactin virulence factor family GO:0007155 RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 PRINTS PR01484 Pertactin virulence factor family signature 643 667 4.9E-5 T 22-04-2016 IPR003991 Pertactin virulence factor family GO:0007155 RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 173 209 4.2E-5 T 22-04-2016 IPR030930 Adhesin of bacterial autotransporter system RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 77 109 1.0E-4 T 22-04-2016 IPR030930 Adhesin of bacterial autotransporter system RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 SMART SM00869 603 856 1.5E-36 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 Gene3D G3DSA:2.160.20.20 23 417 4.3E-29 T 22-04-2016 IPR012332 P22 tailspike C-terminal domain-like RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 Gene3D G3DSA:2.40.128.130 565 867 7.8E-68 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS02400 d3062a7ea56fc0de135337c83027323c 867 SUPERFAMILY SSF51126 53 415 5.34E-23 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 SUPERFAMILY SSF51735 226 385 2.11E-73 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 SUPERFAMILY SSF52283 178 225 3.23E-106 T 22-04-2016 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 SUPERFAMILY SSF52283 386 465 3.23E-106 T 22-04-2016 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 SUPERFAMILY SSF52283 3 142 3.23E-106 T 22-04-2016 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 226 385 1.1E-79 T 22-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 SMART SM00996 5 464 0.0 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 77 91 - T 22-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 PANTHER PTHR23420 5 140 0.0 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 PANTHER PTHR23420 176 465 0.0 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 SMART SM00997 226 385 3.4E-107 T 22-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 Gene3D G3DSA:3.40.50.1480 386 465 1.7E-136 T 22-04-2016 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 Gene3D G3DSA:3.40.50.1480 4 227 1.7E-136 T 22-04-2016 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 6 457 2.6E-175 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 5 464 1.5E-132 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 1 457 45.967 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 Gene3D G3DSA:3.40.50.720 228 384 1.4E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 PIRSF PIRSF001109 1 465 1.1E-179 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS00150 143c92b75b93bebf325c2a80e08580c1 465 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 248 265 - T 22-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 PANTHER PTHR30376 27 292 4.7E-70 T 22-04-2016 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 Pfam PF04545 Sigma-70, region 4 239 289 9.8E-17 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 SUPERFAMILY SSF88946 25 128 1.7E-32 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 Pfam PF04542 Sigma-70 region 2 62 129 3.5E-17 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 55 292 4.7E-33 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 Gene3D G3DSA:1.10.601.10 24 128 1.9E-31 T 22-04-2016 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 Gene3D G3DSA:1.10.10.10 234 292 9.5E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 84 97 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 PRINTS PR00046 Major sigma-70 factor signature 84 97 2.6E-23 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 PRINTS PR00046 Major sigma-70 factor signature 108 116 2.6E-23 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 PRINTS PR00046 Major sigma-70 factor signature 243 255 2.6E-23 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 PRINTS PR00046 Major sigma-70 factor signature 277 288 2.6E-23 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 PRINTS PR00046 Major sigma-70 factor signature 262 277 2.6E-23 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS06035 70af994428ed7ee0c9338264a1549855 303 SUPERFAMILY SSF88659 201 292 1.12E-19 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 7 281 5.1E-126 T 22-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 139 167 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 6 72 3.3E-24 T 22-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 PANTHER PTHR19136:SF52 18 281 1.3E-110 T 22-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 Gene3D G3DSA:2.160.10.10 94 263 2.0E-55 T 22-04-2016 RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 180 215 1.4E-10 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 4 282 56.292 T 22-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 SUPERFAMILY SSF51161 6 266 2.77E-66 T 22-04-2016 IPR011004 Trimeric LpxA-like RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 Gene3D G3DSA:1.10.166.10 4 73 2.6E-28 T 22-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 PANTHER PTHR19136 18 281 1.3E-110 T 22-04-2016 RM11_RS00330 0ff3d2a794279a59baf6e9177540e09e 282 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 136 171 2.5E-4 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 SUPERFAMILY SSF52540 17 76 3.42E-101 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 SUPERFAMILY SSF52540 848 875 3.42E-101 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 SUPERFAMILY SSF52540 338 796 3.42E-101 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 SUPERFAMILY SSF52540 115 198 3.42E-101 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 Gene3D G3DSA:3.40.50.300 478 610 1.8E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 Gene3D G3DSA:3.40.50.300 764 890 1.8E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 Pfam PF12705 PD-(D/E)XK nuclease superfamily 985 1140 4.6E-10 T 22-04-2016 RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 TIGRFAM TIGR02784 addA_alphas: double-strand break repair helicase AddA 12 1144 0.0 T 22-04-2016 IPR014151 DNA helicase, AddA type RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 Pfam PF00580 UvrD/REP helicase N-terminal domain 15 453 1.6E-53 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 Gene3D G3DSA:3.40.50.300 14 72 7.8E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 Gene3D G3DSA:3.40.50.300 348 454 7.8E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 Gene3D G3DSA:3.40.50.300 123 185 7.8E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 SUPERFAMILY SSF52980 987 1124 1.45E-7 T 22-04-2016 IPR011335 Restriction endonuclease type II-like RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 Gene3D G3DSA:1.10.486.10 621 754 5.6E-13 T 22-04-2016 RM11_RS00130 cf6b5d37ff209c8b631245a12607444e 1157 Pfam PF13361 UvrD-like helicase C-terminal domain 551 869 3.1E-24 T 22-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RM11_RS05425 48d138718e8dd186c0b6ba805459b220 337 SUPERFAMILY SSF55785 56 130 9.5E-7 T 22-04-2016 IPR000014 PAS domain RM11_RS05425 48d138718e8dd186c0b6ba805459b220 337 Gene3D G3DSA:3.30.450.20 59 129 7.5E-6 T 22-04-2016 RM11_RS05425 48d138718e8dd186c0b6ba805459b220 337 Pfam PF07536 HWE histidine kinase 141 222 1.8E-24 T 22-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 RM11_RS05425 48d138718e8dd186c0b6ba805459b220 337 PANTHER PTHR41523 83 337 8.5E-31 T 22-04-2016 RM11_RS05425 48d138718e8dd186c0b6ba805459b220 337 SMART SM00911 141 223 3.0E-34 T 22-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 RM11_RS04785 ab914ef47ed224a6c2524098d50e510e 266 Pfam PF09608 Putative transmembrane protein (Alph_Pro_TM) 40 265 3.7E-68 T 22-04-2016 IPR019088 Conserved hypothetical protein CHP02186-related, transmembrane RM11_RS05300 141a897977d66c3eacf63b246f2ad67d 163 Gene3D G3DSA:3.40.50.620 14 127 1.4E-16 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS05300 141a897977d66c3eacf63b246f2ad67d 163 SUPERFAMILY SSF52402 14 126 1.95E-14 T 22-04-2016 RM11_RS05300 141a897977d66c3eacf63b246f2ad67d 163 Pfam PF00582 Universal stress protein family 14 130 1.2E-15 T 22-04-2016 IPR006016 UspA GO:0006950 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 Pfam PF06071 Protein of unknown function (DUF933) 283 366 3.1E-40 T 22-04-2016 IPR013029 Domain of unknown function DUF933 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 SUPERFAMILY SSF81271 283 364 4.36E-36 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 SUPERFAMILY SSF52540 3 305 3.6E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 367 42.258 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 PIRSF PIRSF006641 1 367 6.9E-155 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 4.6E-149 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 Gene3D G3DSA:1.10.150.300 132 203 9.5E-22 T 22-04-2016 IPR023192 TGS-like domain RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 Pfam PF01926 50S ribosome-binding GTPase 5 116 3.5E-24 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 4.3E-35 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 4.3E-35 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 4.3E-35 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 4.3E-35 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 PANTHER PTHR23305:SF12 1 367 4.5E-193 T 22-04-2016 RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 Gene3D G3DSA:3.40.50.300 4 131 1.6E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 Gene3D G3DSA:3.40.50.300 204 271 1.6E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 Gene3D G3DSA:3.10.20.30 272 366 4.2E-48 T 22-04-2016 IPR012675 Beta-grasp domain RM11_RS01650 dd00faea39e33b4a64e843f290482d2a 367 PANTHER PTHR23305 1 367 4.5E-193 T 22-04-2016 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 SUPERFAMILY SSF53738 183 291 2.98E-28 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 205 224 6.9E-20 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 270 285 6.9E-20 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 106 120 6.9E-20 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 241 254 6.9E-20 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 SUPERFAMILY SSF55957 409 542 1.57E-42 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 184 286 1.7E-12 T 22-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 Gene3D G3DSA:3.40.120.10 283 400 1.4E-41 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 PANTHER PTHR22573:SF2 1 539 1.6E-237 T 22-04-2016 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 SUPERFAMILY SSF53738 2 211 3.77E-45 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 PANTHER PTHR22573 1 539 1.6E-237 T 22-04-2016 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 Gene3D G3DSA:3.40.120.10 196 282 9.4E-33 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 440 505 7.8E-8 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 SUPERFAMILY SSF53738 278 414 1.81E-33 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 14 151 1.4E-31 T 22-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 Gene3D G3DSA:3.30.310.50 401 542 2.7E-54 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 107 116 - T 22-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 Gene3D G3DSA:3.40.120.10 4 195 1.2E-56 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS05325 cf0ac8512cbc49e361c3da6dfd26299f 542 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 295 407 5.5E-28 T 22-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 285 313 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 31 345 5.9E-106 T 22-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 Gene3D G3DSA:2.160.10.10 126 227 9.6E-26 T 22-04-2016 RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 119 145 0.0019 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 276 309 0.0024 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 146 179 9.4E-9 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 240 275 4.0E-10 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 SUPERFAMILY SSF51161 45 334 2.49E-71 T 22-04-2016 IPR011004 Trimeric LpxA-like RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 PANTHER PTHR22572 119 313 1.2E-57 T 22-04-2016 RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 PANTHER PTHR22572:SF117 119 313 1.2E-57 T 22-04-2016 RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 14 343 33.833 T 22-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 34 100 4.5E-12 T 22-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 RM11_RS03480 61efa9062d6379ab7da2e433dc0ec430 348 Gene3D G3DSA:2.160.10.10 228 326 3.5E-27 T 22-04-2016 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 PANTHER PTHR13479 15 82 1.5E-26 T 22-04-2016 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 Gene3D G3DSA:4.10.640.10 4 81 6.9E-31 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 SUPERFAMILY SSF46911 9 82 4.05E-27 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 TIGRFAM TIGR00165 S18: ribosomal protein bS18 14 80 6.6E-30 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 30 80 2.0E-22 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 11 82 21.303 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 PRINTS PR00974 Ribosomal protein S18 family signature 47 54 6.3E-18 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 PRINTS PR00974 Ribosomal protein S18 family signature 37 47 6.3E-18 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 PRINTS PR00974 Ribosomal protein S18 family signature 69 79 6.3E-18 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 PRINTS PR00974 Ribosomal protein S18 family signature 55 69 6.3E-18 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 Pfam PF01084 Ribosomal protein S18 28 77 1.8E-24 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02300 2116297f292c7591e29809ac15a91436 82 ProSitePatterns PS00057 Ribosomal protein S18 signature. 30 53 - T 22-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS01455 145e7c9f2ebaae777fd93fd1c053170e 255 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 15 228 1.4E-49 T 22-04-2016 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 RM11_RS01455 145e7c9f2ebaae777fd93fd1c053170e 255 SUPERFAMILY SSF100950 9 229 2.37E-51 T 22-04-2016 RM11_RS01455 145e7c9f2ebaae777fd93fd1c053170e 255 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 13 225 4.4E-48 T 22-04-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 RM11_RS01455 145e7c9f2ebaae777fd93fd1c053170e 255 Gene3D G3DSA:3.40.50.1360 10 229 1.2E-48 T 22-04-2016 RM11_RS01455 145e7c9f2ebaae777fd93fd1c053170e 255 PANTHER PTHR11054 11 224 8.8E-40 T 22-04-2016 RM11_RS04365 da6a96a7f6d47645d8043d749dbd3e9a 289 PANTHER PTHR18895 1 286 3.3E-48 T 22-04-2016 RM11_RS04365 da6a96a7f6d47645d8043d749dbd3e9a 289 PANTHER PTHR18895:SF3 1 286 3.3E-48 T 22-04-2016 RM11_RS04365 da6a96a7f6d47645d8043d749dbd3e9a 289 PIRSF PIRSF000401 3 289 2.3E-64 T 22-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RM11_RS04365 da6a96a7f6d47645d8043d749dbd3e9a 289 Gene3D G3DSA:3.40.50.150 118 285 9.8E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS04365 da6a96a7f6d47645d8043d749dbd3e9a 289 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 49 288 1.4E-63 T 22-04-2016 RM11_RS04365 da6a96a7f6d47645d8043d749dbd3e9a 289 SUPERFAMILY SSF53335 59 288 1.49E-39 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS02865 cc69207fa57a6caba6b726099a3cac3d 121 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 4 121 20.021 T 22-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 RM11_RS02865 cc69207fa57a6caba6b726099a3cac3d 121 PANTHER PTHR11058:SF10 1 121 3.6E-70 T 22-04-2016 RM11_RS02865 cc69207fa57a6caba6b726099a3cac3d 121 PANTHER PTHR11058 1 121 3.6E-70 T 22-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RM11_RS02865 cc69207fa57a6caba6b726099a3cac3d 121 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 25 120 1.0E-38 T 22-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 Gene3D G3DSA:1.20.1640.10 629 830 1.9E-31 T 22-04-2016 RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 Gene3D G3DSA:1.20.1640.10 331 520 1.4E-27 T 22-04-2016 RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 SUPERFAMILY SSF82866 603 827 8.63E-43 T 22-04-2016 RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 SUPERFAMILY SSF82866 322 519 1.24E-44 T 22-04-2016 RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 Pfam PF07549 SecD/SecF GG Motif 43 60 0.002 T 22-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 Pfam PF07549 SecD/SecF GG Motif 562 588 1.4E-5 T 22-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 527 41.078 T 22-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 567 814 3.0E-71 T 22-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 45 512 4.9E-134 T 22-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 539 825 25.576 T 22-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 277 505 3.0E-76 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 636 811 5.5E-46 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 Pfam PF02355 Protein export membrane protein 637 823 6.4E-59 T 22-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 Pfam PF02355 Protein export membrane protein 347 515 1.3E-15 T 22-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 PRINTS PR01755 Bacterial translocase SecF protein signature 730 748 3.73E-27 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 PRINTS PR01755 Bacterial translocase SecF protein signature 762 777 3.73E-27 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 PRINTS PR01755 Bacterial translocase SecF protein signature 682 696 3.73E-27 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RM11_RS04240 3a79bac832fb7b2806d5590cc506ce4c 837 PRINTS PR01755 Bacterial translocase SecF protein signature 566 581 3.73E-27 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RM11_RS01615 df80b8d28bb629b5c95f17f24ec4d362 302 SUPERFAMILY SSF55060 181 297 8.63E-23 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain RM11_RS01615 df80b8d28bb629b5c95f17f24ec4d362 302 PANTHER PTHR20861 13 294 3.3E-49 T 22-04-2016 RM11_RS01615 df80b8d28bb629b5c95f17f24ec4d362 302 SUPERFAMILY SSF54211 14 170 1.44E-26 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS01615 df80b8d28bb629b5c95f17f24ec4d362 302 Pfam PF08544 GHMP kinases C terminal 221 284 6.0E-9 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain RM11_RS01615 df80b8d28bb629b5c95f17f24ec4d362 302 PANTHER PTHR20861:SF2 13 294 3.3E-49 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS01615 df80b8d28bb629b5c95f17f24ec4d362 302 Gene3D G3DSA:3.30.230.10 15 174 8.2E-33 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RM11_RS01615 df80b8d28bb629b5c95f17f24ec4d362 302 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 13 298 26.333 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS01615 df80b8d28bb629b5c95f17f24ec4d362 302 PIRSF PIRSF010376 12 300 7.2E-62 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS01615 df80b8d28bb629b5c95f17f24ec4d362 302 Gene3D G3DSA:3.30.70.890 180 297 7.3E-25 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain RM11_RS01615 df80b8d28bb629b5c95f17f24ec4d362 302 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 17 279 5.0E-43 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 Pfam PF10091 Putative glucoamylase 1330 1503 1.8E-11 T 22-04-2016 IPR019282 Domain of unknown function DUF2329 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 Pfam PF06165 Glycosyltransferase family 36 2088 2329 5.3E-61 T 22-04-2016 IPR010383 Glycosyl hydrolase 94 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 Pfam PF06165 Glycosyltransferase family 36 1561 1804 2.0E-59 T 22-04-2016 IPR010383 Glycosyl hydrolase 94 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 Gene3D G3DSA:2.60.420.10 2774 2831 3.9E-8 T 22-04-2016 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 SUPERFAMILY SSF74650 1542 1808 3.45E-74 T 22-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 SMART SM01068 1536 1594 1.4E-15 T 22-04-2016 IPR009342 Putative carbohydrate binding domain RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 SMART SM01068 2066 2130 1.6E-23 T 22-04-2016 IPR009342 Putative carbohydrate binding domain RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 PANTHER PTHR37469 835 1637 0.0 T 22-04-2016 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 PANTHER PTHR37469 2024 2819 0.0 T 22-04-2016 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 PANTHER PTHR37469 92 810 0.0 T 22-04-2016 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 PANTHER PTHR37469 1653 2001 0.0 T 22-04-2016 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 Gene3D G3DSA:2.70.98.40 2066 2387 3.3E-76 T 22-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 Gene3D G3DSA:2.70.98.40 1543 1839 1.5E-82 T 22-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 SUPERFAMILY SSF53448 703 857 3.56E-6 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 SUPERFAMILY SSF53448 618 670 3.56E-6 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2360 2783 1.1E-118 T 22-04-2016 IPR033432 Glycosyl hydrolase 36, catalytic domain RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 PANTHER PTHR37469:SF2 835 1637 0.0 T 22-04-2016 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 PANTHER PTHR37469:SF2 2024 2819 0.0 T 22-04-2016 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 PANTHER PTHR37469:SF2 92 810 0.0 T 22-04-2016 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 PANTHER PTHR37469:SF2 1653 2001 0.0 T 22-04-2016 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 SUPERFAMILY SSF74650 2066 2332 9.1E-77 T 22-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RM11_RS00430 c52614ccacb5b06d1bba77b8b9441cb4 2855 SUPERFAMILY SSF48208 2345 2824 3.4E-92 T 22-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 Gene3D G3DSA:3.40.710.10 237 319 2.1E-142 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 Gene3D G3DSA:3.40.710.10 436 788 2.1E-142 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 SUPERFAMILY SSF53955 43 257 8.44E-74 T 22-04-2016 IPR023346 Lysozyme-like domain RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 Gene3D G3DSA:1.10.3810.10 57 236 7.0E-71 T 22-04-2016 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 Pfam PF17092 Penicillin-binding protein OB-like domain 322 441 1.2E-19 T 22-04-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 Pfam PF00905 Penicillin binding protein transpeptidase domain 443 734 8.4E-36 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 PANTHER PTHR32282 646 815 4.7E-244 T 22-04-2016 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 PANTHER PTHR32282 437 624 4.7E-244 T 22-04-2016 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 PANTHER PTHR32282 1 316 4.7E-244 T 22-04-2016 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 PANTHER PTHR32282:SF5 646 815 4.7E-244 T 22-04-2016 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 PANTHER PTHR32282:SF5 437 624 4.7E-244 T 22-04-2016 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 PANTHER PTHR32282:SF5 1 316 4.7E-244 T 22-04-2016 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 SUPERFAMILY SSF56601 267 319 7.89E-137 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 SUPERFAMILY SSF56601 215 237 7.89E-137 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 SUPERFAMILY SSF56601 438 791 7.89E-137 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 Pfam PF00912 Transglycosylase 56 233 4.6E-63 T 22-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RM11_RS02990 b4d001ec74d66533947fce9d6a6303f5 821 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 66 739 1.7E-189 T 22-04-2016 RM11_RS01525 b6b1d2e6eba0fa7f18edba29ad907160 247 PANTHER PTHR10108 1 246 7.0E-79 T 22-04-2016 RM11_RS01525 b6b1d2e6eba0fa7f18edba29ad907160 247 Gene3D G3DSA:3.40.50.150 25 233 2.3E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01525 b6b1d2e6eba0fa7f18edba29ad907160 247 SUPERFAMILY SSF53335 15 230 3.47E-41 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01525 b6b1d2e6eba0fa7f18edba29ad907160 247 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 13 241 7.3E-92 T 22-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RM11_RS01525 b6b1d2e6eba0fa7f18edba29ad907160 247 PANTHER PTHR10108:SF902 1 246 7.0E-79 T 22-04-2016 RM11_RS01525 b6b1d2e6eba0fa7f18edba29ad907160 247 Pfam PF13489 Methyltransferase domain 62 216 7.5E-19 T 22-04-2016 RM11_RS01525 b6b1d2e6eba0fa7f18edba29ad907160 247 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 11 247 38.953 T 22-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 SUPERFAMILY SSF51735 122 289 5.52E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 157 177 1.2E-81 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 265 283 1.2E-81 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 206 235 1.2E-81 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 1.2E-81 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 1.2E-81 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 1.2E-81 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 248 264 1.2E-81 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 PANTHER PTHR10025 4 295 2.4E-139 T 22-04-2016 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 269 277 - T 22-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 SUPERFAMILY SSF53223 2 121 1.15E-38 T 22-04-2016 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 Gene3D G3DSA:3.40.50.720 141 273 4.0E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 292 37.254 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 3.0E-36 T 22-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 290 9.9E-67 T 22-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 22-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RM11_RS01480 8081fca83cb6ecfb819f91b26561788f 299 Gene3D G3DSA:3.40.192.10 6 140 8.2E-46 T 22-04-2016 RM11_RS00890 2c9f6daea5ef38b8184ed3cb6ea2ac35 132 SUPERFAMILY SSF52218 2 130 1.79E-24 T 22-04-2016 IPR029039 Flavoprotein-like domain RM11_RS00890 2c9f6daea5ef38b8184ed3cb6ea2ac35 132 PIRSF PIRSF005087 1 132 8.9E-49 T 22-04-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI RM11_RS00890 2c9f6daea5ef38b8184ed3cb6ea2ac35 132 Pfam PF07972 NrdI Flavodoxin like 5 121 1.3E-40 T 22-04-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI RM11_RS00890 2c9f6daea5ef38b8184ed3cb6ea2ac35 132 TIGRFAM TIGR00333 nrdI: nrdI protein 5 129 1.5E-37 T 22-04-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI RM11_RS00890 2c9f6daea5ef38b8184ed3cb6ea2ac35 132 Hamap MF_00128 Protein NrdI [nrdI]. 3 131 28.74 T 22-04-2016 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial RM11_RS00890 2c9f6daea5ef38b8184ed3cb6ea2ac35 132 Gene3D G3DSA:3.40.50.360 4 130 1.5E-48 T 22-04-2016 IPR029039 Flavoprotein-like domain RM11_RS00890 2c9f6daea5ef38b8184ed3cb6ea2ac35 132 PANTHER PTHR37297:SF1 2 130 1.7E-37 T 22-04-2016 RM11_RS00890 2c9f6daea5ef38b8184ed3cb6ea2ac35 132 PANTHER PTHR37297 2 130 1.7E-37 T 22-04-2016 RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 Pfam PF00580 UvrD/REP helicase N-terminal domain 47 316 2.5E-73 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 Gene3D G3DSA:3.40.50.300 42 148 2.2E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 Gene3D G3DSA:3.40.50.300 231 329 2.2E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 Gene3D G3DSA:3.40.50.300 588 682 2.7E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 Gene3D G3DSA:3.40.50.300 330 433 2.7E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 PANTHER PTHR11070 40 685 3.5E-203 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 Gene3D G3DSA:1.10.10.160 152 230 4.9E-19 T 22-04-2016 IPR013986 DExx box DNA helicase domain RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 Gene3D G3DSA:1.10.486.10 434 577 6.4E-49 T 22-04-2016 RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 Pfam PF13361 UvrD-like helicase C-terminal domain 321 652 7.0E-62 T 22-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 SUPERFAMILY SSF52540 42 680 3.16E-171 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04355 80eb57df4dcf65a4ac3bb78280d0b3c7 777 PANTHER PTHR11070:SF7 40 685 3.5E-203 T 22-04-2016 RM11_RS01415 527aac98b147de6273169683d2915ba8 268 Gene3D G3DSA:3.30.450.20 196 262 2.9E-5 T 22-04-2016 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 306 8.3E-93 T 22-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 22-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 Gene3D G3DSA:3.30.479.20 56 149 9.1E-18 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 Gene3D G3DSA:1.10.286.20 202 245 2.5E-22 T 22-04-2016 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 Hamap MF_00050 Elongation factor Ts [tsf]. 1 305 77.569 T 22-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 Gene3D G3DSA:1.10.8.10 1 54 2.1E-27 T 22-04-2016 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 SUPERFAMILY SSF46934 3 54 6.64E-19 T 22-04-2016 IPR009060 UBA-like GO:0005515 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 Gene3D G3DSA:3.30.479.20 246 287 7.8E-23 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 Gene3D G3DSA:3.30.479.20 150 197 7.8E-23 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 Pfam PF00889 Elongation factor TS 70 288 2.7E-69 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 SUPERFAMILY SSF54713 185 288 3.56E-48 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RM11_RS03510 43c62042649cd6976248df9f230ca33d 307 SUPERFAMILY SSF54713 56 91 3.56E-48 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RM11_RS03765 555a5168479b53dfc9b7c2b3f49e28d7 77 Gene3D G3DSA:3.30.300.90 1 76 1.4E-20 T 22-04-2016 IPR002634 BolA protein RM11_RS03765 555a5168479b53dfc9b7c2b3f49e28d7 77 PIRSF PIRSF003113 1 77 4.5E-19 T 22-04-2016 IPR002634 BolA protein RM11_RS03765 555a5168479b53dfc9b7c2b3f49e28d7 77 Pfam PF01722 BolA-like protein 27 76 1.9E-14 T 22-04-2016 IPR002634 BolA protein RM11_RS03765 555a5168479b53dfc9b7c2b3f49e28d7 77 PANTHER PTHR12735:SF3 5 77 8.3E-13 T 22-04-2016 RM11_RS03765 555a5168479b53dfc9b7c2b3f49e28d7 77 PANTHER PTHR12735 5 77 8.3E-13 T 22-04-2016 RM11_RS03765 555a5168479b53dfc9b7c2b3f49e28d7 77 SUPERFAMILY SSF82657 1 76 1.23E-22 T 22-04-2016 IPR002634 BolA protein RM11_RS03010 06cbc6baddafdf0c7e01ec5e8208d35a 226 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 17 138 4.9E-10 T 22-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RM11_RS03010 06cbc6baddafdf0c7e01ec5e8208d35a 226 PANTHER PTHR12277:SF79 27 212 2.6E-50 T 22-04-2016 RM11_RS03010 06cbc6baddafdf0c7e01ec5e8208d35a 226 SUPERFAMILY SSF53474 4 212 2.41E-54 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS03010 06cbc6baddafdf0c7e01ec5e8208d35a 226 Gene3D G3DSA:3.40.50.1820 3 212 5.2E-64 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS03010 06cbc6baddafdf0c7e01ec5e8208d35a 226 PANTHER PTHR12277 27 212 2.6E-50 T 22-04-2016 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 SUPERFAMILY SSF47917 382 510 2.46E-46 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 374 5.7E-71 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 PANTHER PTHR15184 1 495 0.0 T 22-04-2016 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 SUPERFAMILY SSF52540 96 380 1.46E-97 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 Gene3D G3DSA:2.40.30.20 1 92 1.8E-40 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 510 1.0E-244 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 365 374 - T 22-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 381 504 2.4E-47 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 92 4.3E-18 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 511 50.924 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 Gene3D G3DSA:1.20.150.20 382 510 8.4E-55 T 22-04-2016 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 PANTHER PTHR15184:SF3 1 495 0.0 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 SUPERFAMILY SSF50615 10 94 2.2E-29 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 PIRSF PIRSF039088 1 511 1.6E-275 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06100 01b82450b6c6312d1b33e2b129f4d3b5 511 Gene3D G3DSA:3.40.50.300 94 381 2.8E-121 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 Gene3D G3DSA:1.25.50.10 553 876 1.8E-105 T 22-04-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 SUPERFAMILY SSF55486 212 457 2.25E-73 T 22-04-2016 RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 874 0.0 T 22-04-2016 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 SUPERFAMILY SSF63737 6 200 6.41E-46 T 22-04-2016 RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 Pfam PF11940 Domain of unknown function (DUF3458) 465 832 5.3E-121 T 22-04-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 183 198 1.4E-9 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 320 332 1.4E-9 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 301 316 1.4E-9 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 265 275 1.4E-9 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 133 148 1.4E-9 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 Pfam PF01433 Peptidase family M1 52 391 7.2E-72 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RM11_RS02075 72f4d3be98987c4ae4e845ac9c7bad29 876 Gene3D G3DSA:1.10.390.10 315 458 2.4E-29 T 22-04-2016 RM11_RS00160 0aa6507ed2d3602d0fad31ea8ee17fed 332 Gene3D G3DSA:3.40.50.720 11 235 4.9E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00160 0aa6507ed2d3602d0fad31ea8ee17fed 332 SUPERFAMILY SSF51735 12 293 7.33E-45 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00160 0aa6507ed2d3602d0fad31ea8ee17fed 332 PANTHER PTHR12126 9 330 6.1E-59 T 22-04-2016 RM11_RS00160 0aa6507ed2d3602d0fad31ea8ee17fed 332 PANTHER PTHR12126:SF1 9 330 6.1E-59 T 22-04-2016 RM11_RS00160 0aa6507ed2d3602d0fad31ea8ee17fed 332 Pfam PF01370 NAD dependent epimerase/dehydratase family 14 212 3.6E-15 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RM11_RS03285 3028d598a0673b9980eabcf019842e26 163 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 15 163 8.2E-42 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RM11_RS03285 3028d598a0673b9980eabcf019842e26 163 PANTHER PTHR23151 14 163 6.0E-29 T 22-04-2016 RM11_RS03285 3028d598a0673b9980eabcf019842e26 163 Pfam PF00364 Biotin-requiring enzyme 89 161 1.4E-22 T 22-04-2016 IPR000089 Biotin/lipoyl attachment RM11_RS03285 3028d598a0673b9980eabcf019842e26 163 SUPERFAMILY SSF51230 88 163 5.63E-24 T 22-04-2016 IPR011053 Single hybrid motif RM11_RS03285 3028d598a0673b9980eabcf019842e26 163 Gene3D G3DSA:2.40.50.100 86 163 1.3E-29 T 22-04-2016 RM11_RS03285 3028d598a0673b9980eabcf019842e26 163 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 109 123 5.1E-13 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RM11_RS03285 3028d598a0673b9980eabcf019842e26 163 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 92 105 5.1E-13 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RM11_RS03285 3028d598a0673b9980eabcf019842e26 163 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 124 137 5.1E-13 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RM11_RS03285 3028d598a0673b9980eabcf019842e26 163 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 119 136 - T 22-04-2016 IPR001882 Biotin-binding site RM11_RS03085 ba829a09a0d6c89040901ce303f1d25e 211 Hamap MF_00165 Thymidylate kinase [tmk]. 4 209 27.24 T 22-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RM11_RS03085 ba829a09a0d6c89040901ce303f1d25e 211 ProSitePatterns PS01331 Thymidylate kinase signature. 93 105 - T 22-04-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RM11_RS03085 ba829a09a0d6c89040901ce303f1d25e 211 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 201 7.5E-45 T 22-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RM11_RS03085 ba829a09a0d6c89040901ce303f1d25e 211 Pfam PF02223 Thymidylate kinase 8 201 5.8E-45 T 22-04-2016 RM11_RS03085 ba829a09a0d6c89040901ce303f1d25e 211 Gene3D G3DSA:3.40.50.300 3 208 2.7E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03085 ba829a09a0d6c89040901ce303f1d25e 211 SUPERFAMILY SSF52540 1 208 5.09E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 3.3E-23 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 3.3E-23 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 117 139 3.3E-23 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 90 106 3.3E-23 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 SUPERFAMILY SSF52374 1 159 7.6E-37 T 22-04-2016 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 56 6.5E-11 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 163 31.152 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 Pfam PF01467 Cytidylyltransferase-like 5 138 1.8E-10 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 PANTHER PTHR21342 1 163 2.9E-54 T 22-04-2016 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 PANTHER PTHR21342:SF1 1 163 2.9E-54 T 22-04-2016 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 161 6.0E-53 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RM11_RS03930 97f2b2fb9fbaa680e00cb1aab9ac9a77 172 Gene3D G3DSA:3.40.50.620 1 163 1.3E-46 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS05865 8c5a239597580cc4047465c07567b5d6 248 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 33.596 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like RM11_RS05865 8c5a239597580cc4047465c07567b5d6 248 PANTHER PTHR12532 1 240 8.7E-103 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like RM11_RS05865 8c5a239597580cc4047465c07567b5d6 248 Gene3D G3DSA:3.30.1270.10 81 135 1.7E-39 T 22-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RM11_RS05865 8c5a239597580cc4047465c07567b5d6 248 Gene3D G3DSA:3.30.1270.10 211 246 1.7E-39 T 22-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RM11_RS05865 8c5a239597580cc4047465c07567b5d6 248 Gene3D G3DSA:1.10.10.200 1 79 2.5E-37 T 22-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like RM11_RS05865 8c5a239597580cc4047465c07567b5d6 248 Gene3D G3DSA:3.30.70.980 136 204 1.1E-21 T 22-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 RM11_RS05865 8c5a239597580cc4047465c07567b5d6 248 PANTHER PTHR12532:SF0 1 240 8.7E-103 T 22-04-2016 RM11_RS05865 8c5a239597580cc4047465c07567b5d6 248 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 236 9.7E-94 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like RM11_RS05865 8c5a239597580cc4047465c07567b5d6 248 SUPERFAMILY SSF75625 3 245 6.54E-91 T 22-04-2016 IPR029072 YebC-like RM11_RS05865 8c5a239597580cc4047465c07567b5d6 248 Pfam PF01709 Transcriptional regulator 5 236 2.3E-91 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like RM11_RS03080 a3795f1a2f87034f82da998e12b23d47 351 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 34 233 6.8E-57 T 22-04-2016 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS03080 a3795f1a2f87034f82da998e12b23d47 351 SUPERFAMILY SSF52540 113 248 1.59E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03080 a3795f1a2f87034f82da998e12b23d47 351 SUPERFAMILY SSF52540 41 75 1.59E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03080 a3795f1a2f87034f82da998e12b23d47 351 Gene3D G3DSA:3.40.50.300 25 183 1.0E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03080 a3795f1a2f87034f82da998e12b23d47 351 Pfam PF13177 DNA polymerase III, delta subunit 28 195 1.1E-41 T 22-04-2016 RM11_RS03080 a3795f1a2f87034f82da998e12b23d47 351 PANTHER PTHR11669 1 237 4.0E-48 T 22-04-2016 RM11_RS03080 a3795f1a2f87034f82da998e12b23d47 351 PANTHER PTHR11669:SF8 1 237 4.0E-48 T 22-04-2016 RM11_RS03080 a3795f1a2f87034f82da998e12b23d47 351 Gene3D G3DSA:1.10.8.60 184 236 3.2E-8 T 22-04-2016 RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 30 133 3.0E-30 T 22-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 PANTHER PTHR11921 19 258 1.3E-163 T 22-04-2016 RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 32 251 2.1E-75 T 22-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 170 181 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 SUPERFAMILY SSF46548 131 257 2.44E-34 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 SUPERFAMILY SSF54292 27 128 2.29E-28 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 Gene3D G3DSA:1.10.1060.10 130 257 8.7E-47 T 22-04-2016 RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 Gene3D G3DSA:3.10.20.30 22 128 2.6E-39 T 22-04-2016 IPR012675 Beta-grasp domain RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 Pfam PF13534 4Fe-4S dicluster domain 169 242 6.2E-8 T 22-04-2016 RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 PANTHER PTHR11921:SF27 19 258 1.3E-163 T 22-04-2016 RM11_RS06335 37a6d011dd8fbee9876b7c161fb485d2 259 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 80 88 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RM11_RS03180 d3a842cfabc6a419bfb979e6692692b4 352 Pfam PF02653 Branched-chain amino acid transport system / permease component 33 317 2.1E-45 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RM11_RS03180 d3a842cfabc6a419bfb979e6692692b4 352 PANTHER PTHR30482 14 77 5.5E-100 T 22-04-2016 RM11_RS03180 d3a842cfabc6a419bfb979e6692692b4 352 PANTHER PTHR30482 94 349 5.5E-100 T 22-04-2016 RM11_RS03180 d3a842cfabc6a419bfb979e6692692b4 352 PANTHER PTHR30482:SF10 14 77 5.5E-100 T 22-04-2016 RM11_RS03180 d3a842cfabc6a419bfb979e6692692b4 352 PANTHER PTHR30482:SF10 94 349 5.5E-100 T 22-04-2016 RM11_RS01760 5b5aadda8f2590027b87fb7877cd067c 469 Gene3D G3DSA:1.10.45.10 429 468 1.1E-13 T 22-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RM11_RS01760 5b5aadda8f2590027b87fb7877cd067c 469 Gene3D G3DSA:3.30.43.10 3 96 2.1E-19 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RM11_RS01760 5b5aadda8f2590027b87fb7877cd067c 469 Gene3D G3DSA:3.30.465.10 98 217 2.0E-34 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RM11_RS01760 5b5aadda8f2590027b87fb7877cd067c 469 Pfam PF01565 FAD binding domain 43 179 1.1E-30 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RM11_RS01760 5b5aadda8f2590027b87fb7877cd067c 469 SUPERFAMILY SSF56176 3 217 9.82E-67 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RM11_RS01760 5b5aadda8f2590027b87fb7877cd067c 469 SUPERFAMILY SSF55103 220 469 5.4E-57 T 22-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RM11_RS01760 5b5aadda8f2590027b87fb7877cd067c 469 PANTHER PTHR11748:SF76 1 469 7.2E-170 T 22-04-2016 RM11_RS01760 5b5aadda8f2590027b87fb7877cd067c 469 PANTHER PTHR11748 1 469 7.2E-170 T 22-04-2016 RM11_RS01760 5b5aadda8f2590027b87fb7877cd067c 469 Pfam PF02913 FAD linked oxidases, C-terminal domain 221 468 6.2E-49 T 22-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RM11_RS05960 1469d2c9fe988a2688e99a42a6eb7aee 73 PANTHER PTHR33280 1 69 9.8E-24 T 22-04-2016 RM11_RS05960 1469d2c9fe988a2688e99a42a6eb7aee 73 Pfam PF01197 Ribosomal protein L31 1 69 1.0E-25 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05960 1469d2c9fe988a2688e99a42a6eb7aee 73 SUPERFAMILY SSF143800 1 71 2.28E-22 T 22-04-2016 RM11_RS05960 1469d2c9fe988a2688e99a42a6eb7aee 73 ProSitePatterns PS01143 Ribosomal protein L31 signature. 38 60 - T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05960 1469d2c9fe988a2688e99a42a6eb7aee 73 PANTHER PTHR33280:SF2 1 69 9.8E-24 T 22-04-2016 RM11_RS05960 1469d2c9fe988a2688e99a42a6eb7aee 73 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 70 5.4E-33 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05960 1469d2c9fe988a2688e99a42a6eb7aee 73 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 72 26.247 T 22-04-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05960 1469d2c9fe988a2688e99a42a6eb7aee 73 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.1E-8 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05960 1469d2c9fe988a2688e99a42a6eb7aee 73 PRINTS PR01249 Ribosomal protein L31 signature 50 68 1.1E-8 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 PANTHER PTHR11911:SF6 310 497 7.9E-223 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 PANTHER PTHR11911:SF6 13 292 7.9E-223 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 13 466 1.1E-195 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 13 484 1.3E-154 T 22-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 Pfam PF00571 CBS domain 98 153 2.0E-9 T 22-04-2016 IPR000644 CBS domain RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 Pfam PF00571 CBS domain 162 214 3.0E-7 T 22-04-2016 IPR000644 CBS domain RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 SUPERFAMILY SSF51412 227 488 1.24E-118 T 22-04-2016 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 SUPERFAMILY SSF51412 12 95 1.24E-118 T 22-04-2016 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 SMART SM01240 12 484 0.0 T 22-04-2016 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 13 497 81.071 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 Gene3D G3DSA:3.20.20.70 13 496 6.6E-194 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 PIRSF PIRSF000130 1 498 1.8E-199 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 PANTHER PTHR11911 310 497 7.9E-223 T 22-04-2016 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 PANTHER PTHR11911 13 292 7.9E-223 T 22-04-2016 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 SUPERFAMILY SSF54631 66 214 1.01E-29 T 22-04-2016 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 305 317 - T 22-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 SMART SM00116 168 216 3.7E-7 T 22-04-2016 IPR000644 CBS domain RM11_RS00830 1c702c1bbd7abcd85bac42d667eca0e0 499 SMART SM00116 101 155 3.0E-10 T 22-04-2016 IPR000644 CBS domain RM11_RS02880 19e0a00c57cec89aef64063e17fbb97c 396 Gene3D G3DSA:1.10.645.10 8 388 6.5E-64 T 22-04-2016 IPR029014 NiFe hydrogenase-like RM11_RS02880 19e0a00c57cec89aef64063e17fbb97c 396 PANTHER PTHR11993 2 391 2.5E-233 T 22-04-2016 RM11_RS02880 19e0a00c57cec89aef64063e17fbb97c 396 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 8 396 7.0E-175 T 22-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RM11_RS02880 19e0a00c57cec89aef64063e17fbb97c 396 SUPERFAMILY SSF56762 18 396 4.32E-134 T 22-04-2016 IPR029014 NiFe hydrogenase-like RM11_RS02880 19e0a00c57cec89aef64063e17fbb97c 396 PANTHER PTHR11993:SF10 2 391 2.5E-233 T 22-04-2016 RM11_RS02880 19e0a00c57cec89aef64063e17fbb97c 396 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 122 396 1.6E-117 T 22-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 RM11_RS02880 19e0a00c57cec89aef64063e17fbb97c 396 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 396 48.318 T 22-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RM11_RS02880 19e0a00c57cec89aef64063e17fbb97c 396 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 45 56 - T 22-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00691 Adhesin B signature 27 48 1.2E-32 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00691 Adhesin B signature 231 248 1.2E-32 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00691 Adhesin B signature 71 90 1.2E-32 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00691 Adhesin B signature 253 271 1.2E-32 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00691 Adhesin B signature 182 199 1.2E-32 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00691 Adhesin B signature 208 226 1.2E-32 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00691 Adhesin B signature 52 70 1.2E-32 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PANTHER PTHR30477 21 291 5.7E-139 T 22-04-2016 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PANTHER PTHR30477:SF12 21 291 5.7E-139 T 22-04-2016 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 SUPERFAMILY SSF53807 25 295 2.16E-87 T 22-04-2016 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00690 Adhesin family signature 261 280 3.4E-39 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00690 Adhesin family signature 58 71 3.4E-39 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00690 Adhesin family signature 27 45 3.4E-39 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00690 Adhesin family signature 235 253 3.4E-39 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00690 Adhesin family signature 71 88 3.4E-39 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 PRINTS PR00690 Adhesin family signature 182 203 3.4E-39 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 Gene3D G3DSA:3.40.50.1980 25 174 2.7E-46 T 22-04-2016 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 Pfam PF01297 Zinc-uptake complex component A periplasmic 31 287 1.5E-71 T 22-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RM11_RS00400 a5b06c84aa6f207472f4bc40d1165a7c 302 Gene3D G3DSA:3.40.50.1980 175 295 1.2E-38 T 22-04-2016 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 313 1.8E-117 T 22-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.3E-37 T 22-04-2016 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 5.3E-37 T 22-04-2016 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 5.3E-37 T 22-04-2016 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 5.3E-37 T 22-04-2016 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 5.3E-37 T 22-04-2016 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 Gene3D G3DSA:3.50.50.60 120 236 3.7E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 SUPERFAMILY SSF51905 3 313 3.33E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PANTHER PTHR22912 3 314 9.5E-149 T 22-04-2016 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 302 5.6E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 22-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 Gene3D G3DSA:3.50.50.60 237 310 5.2E-9 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PANTHER PTHR22912:SF48 3 314 9.5E-149 T 22-04-2016 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 Gene3D G3DSA:3.50.50.60 5 119 1.6E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 241 262 1.1E-70 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.1E-70 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.1E-70 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 1.1E-70 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 1.1E-70 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 196 212 1.1E-70 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 1.1E-70 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.1E-70 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RM11_RS04615 ea2f97a1e9207174b5a4271d6f8a5581 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 1.1E-70 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 5 409 1.8E-168 T 22-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 SUPERFAMILY SSF51230 2 86 2.17E-25 T 22-04-2016 IPR011053 Single hybrid motif RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 180 407 2.3E-81 T 22-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 Gene3D G3DSA:2.40.50.100 1 86 2.2E-26 T 22-04-2016 RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 Pfam PF00364 Biotin-requiring enzyme 5 73 7.1E-19 T 22-04-2016 IPR000089 Biotin/lipoyl attachment RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 Gene3D G3DSA:3.30.559.10 171 408 1.7E-92 T 22-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 Pfam PF02817 e3 binding domain 119 150 7.3E-9 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 SUPERFAMILY SSF47005 110 154 2.75E-8 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 Gene3D G3DSA:4.10.320.10 115 159 4.9E-13 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RM11_RS06690 e8a3556b5147dcd95ce0325a8e222c8f 410 SUPERFAMILY SSF52777 180 409 3.42E-89 T 22-04-2016 RM11_RS02045 5d0be6ac7d243740390b077bd184a472 228 Pfam PF00072 Response regulator receiver domain 3 112 1.4E-21 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS02045 5d0be6ac7d243740390b077bd184a472 228 SMART SM00448 1 112 8.4E-33 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS02045 5d0be6ac7d243740390b077bd184a472 228 SUPERFAMILY SSF46894 120 222 1.7E-31 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RM11_RS02045 5d0be6ac7d243740390b077bd184a472 228 Gene3D G3DSA:3.40.50.2300 1 122 3.2E-32 T 22-04-2016 RM11_RS02045 5d0be6ac7d243740390b077bd184a472 228 PANTHER PTHR26402:SF578 1 224 1.2E-91 T 22-04-2016 RM11_RS02045 5d0be6ac7d243740390b077bd184a472 228 Gene3D G3DSA:1.10.10.10 123 224 2.0E-35 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS02045 5d0be6ac7d243740390b077bd184a472 228 SMART SM00862 146 221 3.9E-29 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS02045 5d0be6ac7d243740390b077bd184a472 228 SUPERFAMILY SSF52172 1 118 1.71E-32 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS02045 5d0be6ac7d243740390b077bd184a472 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 221 8.1E-28 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS02045 5d0be6ac7d243740390b077bd184a472 228 PANTHER PTHR26402 1 224 1.2E-91 T 22-04-2016 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.4E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 PRINTS PR00315 GTP-binding elongation factor signature 53 61 1.4E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 PRINTS PR00315 GTP-binding elongation factor signature 10 23 1.4E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 PRINTS PR00315 GTP-binding elongation factor signature 130 139 1.4E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.4E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 Pfam PF00009 Elongation factor Tu GTP binding domain 8 185 7.3E-52 T 22-04-2016 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 SMART SM00838 403 490 0.0082 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 SUPERFAMILY SSF54980 296 375 1.58E-18 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 Gene3D G3DSA:3.40.50.300 4 198 1.2E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 Hamap MF_00071 Elongation factor 4 [lepA]. 1 601 303.288 T 22-04-2016 IPR006297 Elongation factor 4 GO:0005525 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 TIGRFAM TIGR01393 lepA: elongation factor 4 7 599 7.1E-292 T 22-04-2016 IPR006297 Elongation factor 4 GO:0005525 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 Pfam PF06421 GTP-binding protein LepA C-terminus 492 598 1.6E-50 T 22-04-2016 IPR013842 GTP-binding protein LepA, C-terminal RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 Gene3D G3DSA:3.30.70.870 297 374 4.5E-26 T 22-04-2016 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 Gene3D G3DSA:3.30.70.240 406 494 2.5E-21 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 SUPERFAMILY SSF54980 404 498 1.63E-24 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 PANTHER PTHR23115 4 378 0.0 T 22-04-2016 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 PANTHER PTHR23115 402 600 0.0 T 22-04-2016 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 Pfam PF03144 Elongation factor Tu domain 2 210 280 3.2E-10 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 Pfam PF00679 Elongation factor G C-terminus 404 489 6.6E-21 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 SUPERFAMILY SSF52540 3 236 1.56E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 PANTHER PTHR23115:SF175 4 378 0.0 T 22-04-2016 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 PANTHER PTHR23115:SF175 402 600 0.0 T 22-04-2016 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 176 1.7E-18 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RM11_RS00325 d97a2c4cea86258889c87f496cdc76aa 601 Gene3D G3DSA:2.40.30.10 199 294 1.9E-23 T 22-04-2016 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 SUPERFAMILY SSF51604 138 419 3.25E-124 T 22-04-2016 IPR029065 Enolase C-terminal domain-like RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 Gene3D G3DSA:3.20.20.120 127 419 2.8E-130 T 22-04-2016 IPR029065 Enolase C-terminal domain-like RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 ProSitePatterns PS00164 Enolase signature. 333 346 - T 22-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 SUPERFAMILY SSF54826 3 136 1.61E-52 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 Pfam PF00113 Enolase, C-terminal TIM barrel domain 139 419 1.6E-123 T 22-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 Pfam PF03952 Enolase, N-terminal domain 4 133 2.7E-55 T 22-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 SMART SM01192 138 421 1.7E-210 T 22-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 PRINTS PR00148 Enolase signature 160 173 4.4E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 PRINTS PR00148 Enolase signature 106 122 4.4E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 PRINTS PR00148 Enolase signature 37 51 4.4E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 PRINTS PR00148 Enolase signature 362 379 4.4E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 PRINTS PR00148 Enolase signature 310 321 4.4E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 PRINTS PR00148 Enolase signature 333 347 4.4E-47 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 PANTHER PTHR11902 1 418 2.4E-243 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 SMART SM01193 4 133 1.4E-86 T 22-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 PIRSF PIRSF001400 1 421 1.2E-186 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 Gene3D G3DSA:3.30.390.10 4 124 1.3E-51 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 419 7.3E-201 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS02505 de420530fa6c95a696b57e4304dd6c78 422 Hamap MF_00318 Enolase [eno]. 2 410 43.951 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 SMART SM00937 64 179 3.1E-58 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 Pfam PF03462 PCRF domain 13 204 4.9E-65 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 356 38.774 T 22-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 SUPERFAMILY SSF75620 13 350 7.32E-127 T 22-04-2016 RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 Gene3D G3DSA:3.30.160.20 211 288 2.0E-33 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 Gene3D G3DSA:1.20.58.410 11 94 3.4E-6 T 22-04-2016 RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 Pfam PF00472 RF-1 domain 212 320 1.4E-41 T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 PANTHER PTHR11075:SF9 7 355 9.9E-173 T 22-04-2016 RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 9 355 5.0E-149 T 22-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RM11_RS00910 f39d0b0c45d5212cdadf3be2c23931fd 359 PANTHER PTHR11075 7 355 9.9E-173 T 22-04-2016 RM11_RS05065 865acad2004e4f29d71901d12e396546 445 Gene3D G3DSA:3.40.50.720 23 137 1.1E-22 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS05065 865acad2004e4f29d71901d12e396546 445 SUPERFAMILY SSF51735 23 137 4.58E-20 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS05065 865acad2004e4f29d71901d12e396546 445 PANTHER PTHR37850 8 443 6.1E-132 T 22-04-2016 RM11_RS05065 865acad2004e4f29d71901d12e396546 445 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 30 158 1.5E-8 T 22-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RM11_RS05065 865acad2004e4f29d71901d12e396546 445 PANTHER PTHR37850:SF2 8 443 6.1E-132 T 22-04-2016 RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 SUPERFAMILY SSF47384 228 299 3.73E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 Gene3D G3DSA:3.30.565.10 288 446 3.5E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 Gene3D G3DSA:1.10.287.130 233 287 7.1E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 SUPERFAMILY SSF55874 291 446 1.83E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 PANTHER PTHR24423 6 18 5.9E-44 T 22-04-2016 RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 PANTHER PTHR24423 183 446 5.9E-44 T 22-04-2016 RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 387 4.38E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 4.38E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 401 4.38E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 SMART SM00304 189 242 0.0011 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 SMART SM00387 339 446 2.6E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 SMART SM00388 243 301 4.3E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 344 445 6.6E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS01730 e65a8ac0c82221344a9117cafb4ad0f7 446 Pfam PF00672 HAMP domain 172 239 3.8E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 Gene3D G3DSA:3.30.930.10 420 590 9.2E-99 T 22-04-2016 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 Gene3D G3DSA:3.30.930.10 135 282 9.2E-99 T 22-04-2016 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 Pfam PF02938 GAD domain 323 406 1.7E-6 T 22-04-2016 IPR029351 GAD domain RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 PRINTS PR01042 Aspartyl-tRNA synthetase signature 524 538 1.4E-21 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 PRINTS PR01042 Aspartyl-tRNA synthetase signature 480 496 1.4E-21 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 1.4E-21 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 1.4E-21 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 Pfam PF00152 tRNA synthetases class II (D, K and N) 122 563 1.8E-93 T 22-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 PANTHER PTHR22594:SF5 2 303 1.9E-200 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 PANTHER PTHR22594:SF5 375 577 1.9E-200 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 SUPERFAMILY SSF50249 4 107 2.29E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 Pfam PF01336 OB-fold nucleic acid binding domain 21 104 1.7E-15 T 22-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 4 569 33.257 T 22-04-2016 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 Gene3D G3DSA:2.40.50.140 4 109 6.7E-35 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 SUPERFAMILY SSF55681 115 298 2.58E-96 T 22-04-2016 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 SUPERFAMILY SSF55681 430 590 2.58E-96 T 22-04-2016 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 Gene3D G3DSA:3.30.1360.30 283 419 1.8E-47 T 22-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 SUPERFAMILY SSF55261 295 425 2.83E-30 T 22-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 5 589 1.2E-185 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 PANTHER PTHR22594 2 303 1.9E-200 T 22-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03785 0d8382c1495ef4599132bd037ef9a336 597 PANTHER PTHR22594 375 577 1.9E-200 T 22-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 Gene3D G3DSA:1.10.1520.10 6 148 5.6E-39 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 11 221 9.5E-65 T 22-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 Hamap MF_00104 Ribonuclease 3 [rnc]. 9 220 25.769 T 22-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 SMART SM00358 157 224 5.8E-16 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 PANTHER PTHR11207 4 222 1.3E-56 T 22-04-2016 RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 ProSitePatterns PS00517 Ribonuclease III family signature. 41 49 - T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 SUPERFAMILY SSF69065 6 159 5.58E-41 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 Gene3D G3DSA:3.30.160.20 156 221 6.7E-23 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 Pfam PF00035 Double-stranded RNA binding motif 157 221 2.7E-12 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 SUPERFAMILY SSF54768 113 228 1.23E-23 T 22-04-2016 RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 Pfam PF14622 Ribonuclease-III-like 19 142 9.5E-26 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RM11_RS02195 aec806433f50ab2086712cbd5862b841 235 SMART SM00535 21 152 1.5E-39 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RM11_RS03260 771c5475e4876b4d8573b76d3684d39a 136 SMART SM00344 2 94 3.3E-11 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RM11_RS03260 771c5475e4876b4d8573b76d3684d39a 136 SUPERFAMILY SSF54909 47 109 4.02E-14 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel RM11_RS03260 771c5475e4876b4d8573b76d3684d39a 136 Gene3D G3DSA:3.30.70.920 38 111 1.4E-22 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RM11_RS03260 771c5475e4876b4d8573b76d3684d39a 136 Pfam PF01037 Lrp/AsnC ligand binding domain 54 110 1.2E-12 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RM11_RS03260 771c5475e4876b4d8573b76d3684d39a 136 PANTHER PTHR30154:SF17 10 108 9.6E-36 T 22-04-2016 RM11_RS03260 771c5475e4876b4d8573b76d3684d39a 136 PANTHER PTHR30154 10 108 9.6E-36 T 22-04-2016 RM11_RS03260 771c5475e4876b4d8573b76d3684d39a 136 Gene3D G3DSA:1.10.10.10 10 36 1.3E-6 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS00730 8e94b68b73ffc12eb2813d3ee7199122 197 Pfam PF01467 Cytidylyltransferase-like 12 150 3.7E-18 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RM11_RS00730 8e94b68b73ffc12eb2813d3ee7199122 197 SUPERFAMILY SSF52374 8 190 1.19E-34 T 22-04-2016 RM11_RS00730 8e94b68b73ffc12eb2813d3ee7199122 197 Gene3D G3DSA:3.40.50.620 10 190 1.4E-34 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS00730 8e94b68b73ffc12eb2813d3ee7199122 197 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 8 184 18.57 T 22-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 RM11_RS00730 8e94b68b73ffc12eb2813d3ee7199122 197 PANTHER PTHR39321 173 190 3.4E-25 T 22-04-2016 RM11_RS00730 8e94b68b73ffc12eb2813d3ee7199122 197 PANTHER PTHR39321 5 157 3.4E-25 T 22-04-2016 RM11_RS03505 f33a75fcc6efed86d4769253b1cecae6 239 PANTHER PTHR21499 6 239 6.9E-93 T 22-04-2016 RM11_RS03505 f33a75fcc6efed86d4769253b1cecae6 239 PANTHER PTHR21499:SF23 6 239 6.9E-93 T 22-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RM11_RS03505 f33a75fcc6efed86d4769253b1cecae6 239 Gene3D G3DSA:3.40.1160.10 5 238 4.5E-77 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS03505 f33a75fcc6efed86d4769253b1cecae6 239 SUPERFAMILY SSF53633 5 238 1.17E-66 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS03505 f33a75fcc6efed86d4769253b1cecae6 239 Pfam PF00696 Amino acid kinase family 8 216 2.3E-27 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS03505 f33a75fcc6efed86d4769253b1cecae6 239 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 7 238 2.1E-98 T 22-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RM11_RS03505 f33a75fcc6efed86d4769253b1cecae6 239 Hamap MF_01220_B Uridylate kinase [pyrH]. 5 238 41.363 T 22-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RM11_RS03505 f33a75fcc6efed86d4769253b1cecae6 239 PIRSF PIRSF005650 2 239 1.6E-87 T 22-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RM11_RS00755 7de90e43e89ce6ac202778383e3e125b 173 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 6 171 33.051 T 22-04-2016 IPR022927 RNA pyrophosphohydrolase RppH RM11_RS00755 7de90e43e89ce6ac202778383e3e125b 173 Pfam PF00293 NUDIX domain 12 161 6.0E-26 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RM11_RS00755 7de90e43e89ce6ac202778383e3e125b 173 PRINTS PR00502 NUDIX hydrolase family signature 47 61 3.5E-6 T 22-04-2016 IPR020476 NUDIX hydrolase RM11_RS00755 7de90e43e89ce6ac202778383e3e125b 173 PRINTS PR00502 NUDIX hydrolase family signature 61 76 3.5E-6 T 22-04-2016 IPR020476 NUDIX hydrolase RM11_RS00755 7de90e43e89ce6ac202778383e3e125b 173 ProSitePatterns PS00893 Nudix box signature. 52 73 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RM11_RS00755 7de90e43e89ce6ac202778383e3e125b 173 PANTHER PTHR11839:SF13 12 166 5.5E-32 T 22-04-2016 RM11_RS00755 7de90e43e89ce6ac202778383e3e125b 173 Gene3D G3DSA:3.90.79.10 10 167 7.1E-33 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RM11_RS00755 7de90e43e89ce6ac202778383e3e125b 173 SUPERFAMILY SSF55811 9 168 4.06E-33 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RM11_RS00755 7de90e43e89ce6ac202778383e3e125b 173 PANTHER PTHR11839 12 166 5.5E-32 T 22-04-2016 RM11_RS05475 fac1e42780aef3bc1ddc85bbd3215f2d 323 Pfam PF07484 Phage Tail Collar Domain 160 216 3.9E-21 T 22-04-2016 IPR011083 Phage tail collar domain RM11_RS05475 fac1e42780aef3bc1ddc85bbd3215f2d 323 Gene3D G3DSA:3.90.1340.10 154 221 5.7E-24 T 22-04-2016 IPR011083 Phage tail collar domain RM11_RS05475 fac1e42780aef3bc1ddc85bbd3215f2d 323 SUPERFAMILY SSF88874 155 323 2.09E-44 T 22-04-2016 RM11_RS06375 9558993d83a8fc06aac1a2823dd575af 322 PANTHER PTHR30349 28 322 1.8E-77 T 22-04-2016 RM11_RS06375 9558993d83a8fc06aac1a2823dd575af 322 Pfam PF00589 Phage integrase family 160 307 1.5E-34 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RM11_RS06375 9558993d83a8fc06aac1a2823dd575af 322 Gene3D G3DSA:1.10.150.130 27 119 1.4E-21 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal RM11_RS06375 9558993d83a8fc06aac1a2823dd575af 322 PANTHER PTHR30349:SF5 28 322 1.8E-77 T 22-04-2016 RM11_RS06375 9558993d83a8fc06aac1a2823dd575af 322 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 28 114 5.5E-14 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RM11_RS06375 9558993d83a8fc06aac1a2823dd575af 322 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 22 322 30.896 T 22-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RM11_RS06375 9558993d83a8fc06aac1a2823dd575af 322 Gene3D G3DSA:1.10.443.10 154 315 1.1E-47 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RM11_RS06375 9558993d83a8fc06aac1a2823dd575af 322 SUPERFAMILY SSF56349 28 315 1.85E-48 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 SUPERFAMILY SSF54373 188 292 2.55E-21 T 22-04-2016 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 SUPERFAMILY SSF51905 6 183 3.67E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 SUPERFAMILY SSF51905 287 379 3.67E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 PANTHER PTHR13789 6 410 2.1E-64 T 22-04-2016 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 Pfam PF01494 FAD binding domain 6 359 3.5E-24 T 22-04-2016 IPR002938 FAD-binding domain GO:0071949 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 315 1.2E-15 T 22-04-2016 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 162 177 1.2E-15 T 22-04-2016 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.2E-15 T 22-04-2016 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 315 331 1.2E-15 T 22-04-2016 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 PANTHER PTHR13789:SF186 6 410 2.1E-64 T 22-04-2016 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 Gene3D G3DSA:3.50.50.60 287 367 5.8E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03810 3fdfe0ab6b1d9b19ee5631d66c018f5a 411 Gene3D G3DSA:3.50.50.60 6 188 5.8E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS02160 d2732e490729dd7a23aa5e79df4f58b9 222 SMART SM00986 46 212 2.2E-26 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS02160 d2732e490729dd7a23aa5e79df4f58b9 222 SMART SM00987 46 212 2.2E-26 T 22-04-2016 RM11_RS02160 d2732e490729dd7a23aa5e79df4f58b9 222 PANTHER PTHR33693 14 216 5.5E-55 T 22-04-2016 RM11_RS02160 d2732e490729dd7a23aa5e79df4f58b9 222 PANTHER PTHR33693:SF2 14 216 5.5E-55 T 22-04-2016 RM11_RS02160 d2732e490729dd7a23aa5e79df4f58b9 222 SUPERFAMILY SSF52141 16 220 1.11E-43 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS02160 d2732e490729dd7a23aa5e79df4f58b9 222 Gene3D G3DSA:3.40.470.10 14 217 1.5E-47 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS02160 d2732e490729dd7a23aa5e79df4f58b9 222 Pfam PF03167 Uracil DNA glycosylase superfamily 46 213 2.5E-26 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS01845 20a84aec320f56be0f100558c86babf2 340 PANTHER PTHR30426 7 326 1.2E-126 T 22-04-2016 RM11_RS01845 20a84aec320f56be0f100558c86babf2 340 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 7 294 35.426 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RM11_RS01845 20a84aec320f56be0f100558c86babf2 340 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 9 292 9.9E-97 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RM11_RS01845 20a84aec320f56be0f100558c86babf2 340 Pfam PF02401 LytB protein 9 289 3.2E-80 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RM11_RS00445 f08823830a51ecc01bc8f93225312f03 442 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 13 440 31.316 T 22-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS00445 f08823830a51ecc01bc8f93225312f03 442 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 17 439 4.2E-126 T 22-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS00445 f08823830a51ecc01bc8f93225312f03 442 SUPERFAMILY SSF55205 10 439 6.32E-120 T 22-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RM11_RS00445 f08823830a51ecc01bc8f93225312f03 442 Gene3D G3DSA:3.65.10.10 239 438 1.8E-49 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RM11_RS00445 f08823830a51ecc01bc8f93225312f03 442 PIRSF PIRSF000505 3 442 6.6E-118 T 22-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS00445 f08823830a51ecc01bc8f93225312f03 442 Gene3D G3DSA:3.65.10.10 25 238 2.2E-53 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RM11_RS00445 f08823830a51ecc01bc8f93225312f03 442 PANTHER PTHR21090 15 441 4.6E-150 T 22-04-2016 RM11_RS00445 f08823830a51ecc01bc8f93225312f03 442 PANTHER PTHR21090:SF5 15 441 4.6E-150 T 22-04-2016 RM11_RS00445 f08823830a51ecc01bc8f93225312f03 442 ProSitePatterns PS00104 EPSP synthase signature 1. 91 105 - T 22-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS00445 f08823830a51ecc01bc8f93225312f03 442 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 12 431 2.4E-105 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 SUPERFAMILY SSF51735 3 157 2.25E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 117 2.4E-27 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 2 332 34.237 T 22-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 SMART SM00859 4 119 7.1E-35 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 PANTHER PTHR10174:SF2 66 337 1.6E-73 T 22-04-2016 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 PIRSF PIRSF000148 2 337 5.6E-121 T 22-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 PANTHER PTHR10174 66 337 1.6E-73 T 22-04-2016 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 4 333 8.3E-136 T 22-04-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 318 2.6E-51 T 22-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 Gene3D G3DSA:3.30.360.10 143 314 6.9E-78 T 22-04-2016 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 SUPERFAMILY SSF55347 129 319 1.69E-72 T 22-04-2016 RM11_RS05035 5460ba3c4f9be4fa472046bb3f300e31 343 Gene3D G3DSA:3.40.50.720 2 142 1.0E-58 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 PANTHER PTHR10799:SF657 306 452 6.4E-37 T 22-04-2016 RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 SUPERFAMILY SSF55785 410 521 1.74E-13 T 22-04-2016 IPR000014 PAS domain RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 PANTHER PTHR10799:SF657 563 781 6.4E-37 T 22-04-2016 RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 428 525 5.1E-8 T 22-04-2016 IPR000014 PAS domain RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 PANTHER PTHR10799 914 933 6.4E-37 T 22-04-2016 RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 PANTHER PTHR10799 306 452 6.4E-37 T 22-04-2016 RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 SMART SM00267 518 691 2.4E-38 T 22-04-2016 IPR000160 GGDEF domain RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 Pfam PF08447 PAS fold 424 511 2.2E-12 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 PANTHER PTHR10799 563 781 6.4E-37 T 22-04-2016 RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 SUPERFAMILY SSF141868 707 956 2.75E-62 T 22-04-2016 IPR001633 EAL domain RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 SUPERFAMILY SSF55073 534 692 9.42E-32 T 22-04-2016 IPR029787 Nucleotide cyclase RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 Pfam PF00990 Diguanylate cyclase, GGDEF domain 529 686 4.3E-34 T 22-04-2016 IPR000160 GGDEF domain RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 Gene3D G3DSA:3.30.70.270 531 694 2.4E-36 T 22-04-2016 RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 527 689 1.8E-28 T 22-04-2016 IPR000160 GGDEF domain RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 SMART SM00052 701 946 6.1E-50 T 22-04-2016 IPR001633 EAL domain RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 Gene3D G3DSA:3.30.450.20 406 516 2.7E-15 T 22-04-2016 RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 Gene3D G3DSA:3.20.20.450 707 953 1.8E-65 T 22-04-2016 IPR001633 EAL domain RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 Pfam PF00563 EAL domain 708 938 7.1E-53 T 22-04-2016 IPR001633 EAL domain RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 Pfam PF07696 7TMR-DISM extracellular 2 82 173 1.5E-5 T 22-04-2016 IPR011622 7TM-DISM receptor, extracellular domain, type 2 RM11_RS01870 15c737c5f7875ae25921a29d21ff984b 961 PANTHER PTHR10799:SF657 914 933 6.4E-37 T 22-04-2016 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 17 716 0.0 T 22-04-2016 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 568 590 - T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 Pfam PF02867 Ribonucleotide reductase, barrel domain 178 695 2.9E-140 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 PANTHER PTHR11573 32 700 1.3E-242 T 22-04-2016 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 105 698 1.2E-157 T 22-04-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 SUPERFAMILY SSF48168 16 176 2.88E-59 T 22-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 SUPERFAMILY SSF51998 177 700 1.34E-180 T 22-04-2016 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 495 518 1.5E-31 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 428 451 1.5E-31 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 579 606 1.5E-31 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 384 395 1.5E-31 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 253 272 1.5E-31 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 467 489 1.5E-31 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 Pfam PF08343 Ribonucleotide reductase N-terminal 18 99 1.2E-31 T 22-04-2016 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 101 173 1.5E-12 T 22-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 Gene3D G3DSA:3.20.70.20 579 695 7.3E-55 T 22-04-2016 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 Gene3D G3DSA:3.20.70.20 352 515 7.3E-55 T 22-04-2016 RM11_RS00895 67d2b7e7ade6b945b56de24bc94063d9 716 Gene3D G3DSA:3.20.70.20 141 299 7.3E-55 T 22-04-2016 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 SMART SM01096 479 601 3.9E-63 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Gene3D G3DSA:3.40.50.1380 1027 1160 5.0E-41 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 737 959 1.7E-25 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 202 387 3.0E-65 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 868 885 6.0E-29 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 777 789 6.0E-29 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 630 644 6.0E-29 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 659 669 6.0E-29 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 923 952 6.0E-29 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 1002 1020 6.0E-29 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Gene3D G3DSA:3.30.1490.20 201 253 5.1E-18 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 SMART SM00851 1045 1131 7.2E-31 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 190 1143 0.0 T 22-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 SUPERFAMILY SSF52440 617 739 2.01E-43 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 482 601 4.9E-38 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PANTHER PTHR11405 823 1161 0.0 T 22-04-2016 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PANTHER PTHR11405 1 149 0.0 T 22-04-2016 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PANTHER PTHR11405 203 801 0.0 T 22-04-2016 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PANTHER PTHR11405:SF5 823 1161 0.0 T 22-04-2016 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PANTHER PTHR11405:SF5 1 149 0.0 T 22-04-2016 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 PANTHER PTHR11405:SF5 203 801 0.0 T 22-04-2016 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Gene3D G3DSA:3.30.470.20 254 452 6.5E-78 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Gene3D G3DSA:3.30.470.20 829 1024 5.9E-66 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 SUPERFAMILY SSF52440 1 127 3.31E-49 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Gene3D G3DSA:3.40.50.20 591 726 8.4E-54 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Gene3D G3DSA:3.30.1490.20 751 807 2.4E-17 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 SUPERFAMILY SSF56059 194 454 4.77E-102 T 22-04-2016 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 350 357 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 923 930 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 773 787 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 SUPERFAMILY SSF48108 449 604 1.07E-45 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Gene3D G3DSA:1.10.1030.10 453 590 1.9E-44 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Pfam PF02142 MGS-like domain 1046 1131 5.0E-18 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1152 13.006 T 22-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 Gene3D G3DSA:3.40.50.20 3 108 8.3E-44 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 SUPERFAMILY SSF56059 737 1023 1.5E-89 T 22-04-2016 RM11_RS04595 db4cf7e434e90ea98226f3309ad955a1 1161 SUPERFAMILY SSF52335 1025 1160 1.22E-37 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 SMART SM01005 247 372 1.4E-54 T 22-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 Pfam PF01168 Alanine racemase, N-terminal domain 21 236 1.2E-49 T 22-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 44 54 - T 22-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 Hamap MF_01201 Alanine racemase. 14 372 28.352 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PRINTS PR00992 Alanine racemase signature 171 182 1.1E-44 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PRINTS PR00992 Alanine racemase signature 209 236 1.1E-44 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PRINTS PR00992 Alanine racemase signature 354 367 1.1E-44 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PRINTS PR00992 Alanine racemase signature 39 55 1.1E-44 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PRINTS PR00992 Alanine racemase signature 263 278 1.1E-44 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PRINTS PR00992 Alanine racemase signature 75 93 1.1E-44 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PRINTS PR00992 Alanine racemase signature 301 318 1.1E-44 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PRINTS PR00992 Alanine racemase signature 137 149 1.1E-44 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PRINTS PR00992 Alanine racemase signature 280 295 1.1E-44 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 TIGRFAM TIGR00492 alr: alanine racemase 17 372 1.6E-77 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 SUPERFAMILY SSF50621 244 372 2.41E-40 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 SUPERFAMILY SSF51419 21 248 9.45E-55 T 22-04-2016 IPR029066 PLP-binding barrel RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PANTHER PTHR30511:SF0 15 372 7.6E-97 T 22-04-2016 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 Gene3D G3DSA:2.40.37.10 230 372 8.2E-48 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 Pfam PF00842 Alanine racemase, C-terminal domain 247 371 2.1E-33 T 22-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 PANTHER PTHR30511 15 372 7.6E-97 T 22-04-2016 RM11_RS04995 1d3683544b3c954601fdd2803b3a96d4 372 Gene3D G3DSA:3.20.20.10 24 229 4.7E-57 T 22-04-2016 IPR029066 PLP-binding barrel RM11_RS03945 afb9503030b5e7475d54976633be2524 963 PANTHER PTHR32282 3 243 0.0 T 22-04-2016 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 PANTHER PTHR32282 263 961 0.0 T 22-04-2016 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Pfam PF00005 ABC transporter 827 881 3.4E-5 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:3.40.50.300 631 690 2.7E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:3.40.50.300 7 54 2.6E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:3.40.50.300 500 617 2.6E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:3.40.50.300 842 959 2.7E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03945 afb9503030b5e7475d54976633be2524 963 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 7 946 0.0 T 22-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 SUPERFAMILY SSF52540 637 934 1.15E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:1.20.1580.10 271 304 1.0E-51 T 22-04-2016 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:1.20.1580.10 94 132 1.0E-51 T 22-04-2016 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:1.20.1580.10 427 499 1.0E-51 T 22-04-2016 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:3.30.1490.20 133 156 3.9E-26 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:3.30.1490.20 203 242 3.9E-26 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 ProSitePatterns PS00211 ABC transporters family signature. 851 865 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 ProSitePatterns PS00211 ABC transporters family signature. 509 523 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:1.20.1580.10 715 841 3.7E-53 T 22-04-2016 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 SUPERFAMILY SSF52540 7 207 8.17E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03945 afb9503030b5e7475d54976633be2524 963 SUPERFAMILY SSF52540 453 591 8.17E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Gene3D G3DSA:1.10.8.280 307 426 9.5E-36 T 22-04-2016 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 PANTHER PTHR32282:SF2 3 243 0.0 T 22-04-2016 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 PANTHER PTHR32282:SF2 263 961 0.0 T 22-04-2016 RM11_RS03945 afb9503030b5e7475d54976633be2524 963 Hamap MF_00205 UvrABC system protein A [uvrA]. 4 961 22.416 T 22-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 ProSitePatterns PS00856 Guanylate kinase-like signature. 51 68 - T 22-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 PANTHER PTHR23117:SF13 15 204 1.8E-78 T 22-04-2016 RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 Gene3D G3DSA:3.30.63.10 47 98 5.6E-27 T 22-04-2016 RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 SMART SM00072 17 199 4.3E-55 T 22-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 Gene3D G3DSA:3.40.50.300 16 40 3.8E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 Gene3D G3DSA:3.40.50.300 99 205 3.8E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 Hamap MF_00328 Guanylate kinase [gmk]. 16 199 35.179 T 22-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 SUPERFAMILY SSF52540 15 200 1.25E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 19 195 1.7E-68 T 22-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 PANTHER PTHR23117 15 204 1.8E-78 T 22-04-2016 RM11_RS02340 3c24bad7c48750ba6da943cb350d20df 221 Pfam PF00625 Guanylate kinase 21 194 7.6E-44 T 22-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RM11_RS04125 e842d1784eced6fd39b0db886afc291a 246 Gene3D G3DSA:4.10.960.10 78 158 8.0E-30 T 22-04-2016 RM11_RS04125 e842d1784eced6fd39b0db886afc291a 246 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 205 2.6E-82 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04125 e842d1784eced6fd39b0db886afc291a 246 SUPERFAMILY SSF50447 1 215 4.41E-79 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RM11_RS04125 e842d1784eced6fd39b0db886afc291a 246 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 35.279 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04125 e842d1784eced6fd39b0db886afc291a 246 Gene3D G3DSA:2.40.30.10 4 33 7.5E-8 T 22-04-2016 RM11_RS04125 e842d1784eced6fd39b0db886afc291a 246 Gene3D G3DSA:2.40.30.10 159 210 7.5E-8 T 22-04-2016 RM11_RS04125 e842d1784eced6fd39b0db886afc291a 246 PANTHER PTHR11229 1 217 3.0E-107 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04125 e842d1784eced6fd39b0db886afc291a 246 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 22-04-2016 IPR019926 Ribosomal protein L3, conserved site RM11_RS04125 e842d1784eced6fd39b0db886afc291a 246 Pfam PF00297 Ribosomal protein L3 88 179 6.7E-12 T 22-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 SMART SM00228 96 167 1.5E-14 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 PANTHER PTHR32060 56 372 2.0E-113 T 22-04-2016 RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 Gene3D G3DSA:2.30.42.10 102 178 2.6E-27 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 Gene3D G3DSA:3.30.750.44 45 101 7.1E-9 T 22-04-2016 RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 SUPERFAMILY SSF50156 89 179 5.49E-19 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 Gene3D G3DSA:3.90.226.10 179 363 1.5E-66 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 Gene3D G3DSA:3.90.226.10 399 424 1.5E-66 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 Pfam PF03572 Peptidase family S41 193 360 3.9E-54 T 22-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 Pfam PF13180 PDZ domain 96 176 1.1E-14 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 SMART SM00245 169 361 2.6E-84 T 22-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 SUPERFAMILY SSF52096 187 375 1.34E-81 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 SUPERFAMILY SSF52096 26 114 1.34E-81 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS00750 d712d2676c72d45b835b90297bb05acc 441 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 50 370 5.6E-100 T 22-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 SUPERFAMILY SSF47384 505 580 1.22E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 SUPERFAMILY SSF158472 327 376 2.22E-9 T 22-04-2016 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 623 736 1.4E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 SUPERFAMILY SSF55785 380 499 8.38E-11 T 22-04-2016 IPR000014 PAS domain RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 PANTHER PTHR24423:SF520 12 22 2.2E-74 T 22-04-2016 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 PANTHER PTHR24423:SF520 371 719 2.2E-74 T 22-04-2016 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 Pfam PF00672 HAMP domain 310 375 2.8E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 Gene3D G3DSA:3.30.450.20 389 499 3.9E-12 T 22-04-2016 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 Gene3D G3DSA:3.30.565.10 581 735 2.3E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 SMART SM00388 509 580 5.0E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 SMART SM00304 326 379 1.4E-7 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 PRINTS PR00344 Bacterial sensor protein C-terminal signature 682 692 8.4E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 PRINTS PR00344 Bacterial sensor protein C-terminal signature 693 711 8.4E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 PRINTS PR00344 Bacterial sensor protein C-terminal signature 664 678 8.4E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 Pfam PF00989 PAS fold 396 480 2.8E-6 T 22-04-2016 IPR013767 PAS fold GO:0006355 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 Gene3D G3DSA:1.10.287.130 505 576 2.3E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 SUPERFAMILY SSF55874 573 736 4.85E-28 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 SMART SM00091 393 460 0.0017 T 22-04-2016 IPR000014 PAS domain RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 PANTHER PTHR24423 12 22 2.2E-74 T 22-04-2016 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 PANTHER PTHR24423 371 719 2.2E-74 T 22-04-2016 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 Pfam PF00512 His Kinase A (phospho-acceptor) domain 513 577 1.0E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 396 506 2.2E-8 T 22-04-2016 IPR000014 PAS domain RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 SMART SM00387 620 738 5.3E-23 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02565 272b06e74c31879c51eb28318bb4074a 754 PIRSF PIRSF037532 7 742 5.0E-235 T 22-04-2016 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 Pfam PF00672 HAMP domain 285 352 3.4E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 SMART SM00304 302 357 9.1E-5 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 SUPERFAMILY SSF47384 341 422 5.89E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 578 591 6.5E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 547 565 6.5E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 526 6.5E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 530 540 6.5E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 SUPERFAMILY SSF55874 413 592 4.85E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 Pfam PF13756 Stimulus-sensing domain 134 242 2.3E-29 T 22-04-2016 IPR025919 Stimulus-sensing domain RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 474 593 7.2E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 Pfam PF13755 Sensor N-terminal transmembrane domain 34 108 2.5E-30 T 22-04-2016 IPR025908 Sensor N-terminal transmembrane domain RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 SMART SM00388 358 423 2.2E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 PANTHER PTHR24423 296 593 3.4E-55 T 22-04-2016 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 PANTHER PTHR24423 25 47 3.4E-55 T 22-04-2016 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 Gene3D G3DSA:1.10.287.130 355 408 3.3E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 Pfam PF00512 His Kinase A (phospho-acceptor) domain 360 422 4.7E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 SMART SM00387 474 594 3.1E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00285 12c266bd1df3755c5f2f94a5ebba4444 594 Gene3D G3DSA:3.30.565.10 409 592 3.0E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 268 281 - T 22-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 Gene3D G3DSA:1.10.1390.10 506 552 1.2E-17 T 22-04-2016 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 PANTHER PTHR11469 3 554 1.7E-259 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 50 528 39.751 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 501 518 - T 22-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 PANTHER PTHR11469:SF4 3 554 1.7E-259 T 22-04-2016 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 SUPERFAMILY SSF53697 16 551 2.18E-197 T 22-04-2016 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 Pfam PF00342 Phosphoglucose isomerase 56 545 8.0E-198 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 487 501 8.6E-54 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 154 173 8.6E-54 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 501 514 8.6E-54 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 264 282 8.6E-54 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 341 362 8.6E-54 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 469 487 8.6E-54 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 Gene3D G3DSA:3.40.50.10490 15 106 6.3E-142 T 22-04-2016 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 Gene3D G3DSA:3.40.50.10490 151 188 6.3E-142 T 22-04-2016 RM11_RS00640 a4adba7fda2424021e99dd29d7302814 554 Gene3D G3DSA:3.40.50.10490 266 505 6.3E-142 T 22-04-2016 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 Pfam PF00696 Amino acid kinase family 33 278 6.5E-51 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 PANTHER PTHR23342 19 300 2.8E-104 T 22-04-2016 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 SUPERFAMILY SSF53633 15 300 1.7E-89 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 TIGRFAM TIGR00761 argB: acetylglutamate kinase 33 276 2.7E-76 T 22-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 Hamap MF_00082_A Acetylglutamate kinase [argB]. 33 286 29.001 T 22-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 Hamap MF_00082_B Acetylglutamate kinase [argB]. 30 301 36.132 T 22-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 PIRSF PIRSF000728 13 301 2.2E-105 T 22-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 Gene3D G3DSA:3.40.1160.10 31 300 1.1E-103 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 PRINTS PR00474 Glutamate 5-kinase family signature 251 271 4.7E-6 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 PRINTS PR00474 Glutamate 5-kinase family signature 201 228 4.7E-6 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RM11_RS00315 06b87bc79aea293ad34c01b2b1fe2c53 301 PRINTS PR00474 Glutamate 5-kinase family signature 63 77 4.7E-6 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 Gene3D G3DSA:1.10.10.250 73 141 2.1E-29 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 22-04-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 PANTHER PTHR11661 1 142 2.3E-61 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 1.9E-22 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 SUPERFAMILY SSF54747 3 73 3.4E-29 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 Gene3D G3DSA:3.30.1550.10 2 72 6.0E-36 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 SUPERFAMILY SSF46906 68 140 2.09E-24 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 SMART SM00649 9 141 1.1E-81 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 4.8E-65 T 22-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 10 67 3.2E-29 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 5.0E-17 T 22-04-2016 RM11_RS03590 5625f52a6c897f43508d75ee72b687a0 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.362 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 523 541 - T 22-04-2016 IPR028299 ClpA/B, conserved site 2 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 Gene3D G3DSA:3.40.50.300 447 669 1.8E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 SUPERFAMILY SSF81923 5 141 3.14E-52 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 Gene3D G3DSA:1.10.8.60 358 440 6.5E-27 T 22-04-2016 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 307 319 - T 22-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 216 321 1.4E-12 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 15 64 4.0E-10 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 PANTHER PTHR11638:SF111 4 771 0.0 T 22-04-2016 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 PANTHER PTHR11638 4 771 0.0 T 22-04-2016 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 SUPERFAMILY SSF52540 173 426 5.64E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 659 738 2.5E-22 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 Gene3D G3DSA:3.40.50.300 175 355 3.7E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 SMART SM00382 211 346 9.9E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 SMART SM00382 492 655 2.3E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 Gene3D G3DSA:1.10.8.60 670 742 5.4E-26 T 22-04-2016 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 538 556 1.8E-36 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 614 1.8E-36 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 496 514 1.8E-36 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 567 585 1.8E-36 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 Gene3D G3DSA:1.10.1780.10 4 141 1.2E-40 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 Pfam PF07724 AAA domain (Cdc48 subfamily) 491 652 1.0E-43 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 SUPERFAMILY SSF52540 442 734 5.91E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 SMART SM01086 658 752 1.6E-28 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RM11_RS03535 91dc9dd73f5f8671fb56ae28799fb46d 783 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 6 738 0.0 T 22-04-2016 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 RM11_RS05165 23c1a8c7ab16ec78586c27d27ad3dc9d 109 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 3 108 6.2E-31 T 22-04-2016 IPR005939 Beta-lactamase hydrolase-like GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RM11_RS05165 23c1a8c7ab16ec78586c27d27ad3dc9d 109 Pfam PF04273 Putative phosphatase (DUF442) 3 107 2.2E-28 T 22-04-2016 IPR005939 Beta-lactamase hydrolase-like GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RM11_RS05165 23c1a8c7ab16ec78586c27d27ad3dc9d 109 Gene3D G3DSA:3.90.190.10 1 108 3.8E-37 T 22-04-2016 IPR029021 Protein-tyrosine phosphatase-like RM11_RS05165 23c1a8c7ab16ec78586c27d27ad3dc9d 109 SUPERFAMILY SSF52799 2 98 6.48E-9 T 22-04-2016 IPR029021 Protein-tyrosine phosphatase-like RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 SUPERFAMILY SSF52374 7 352 2.36E-89 T 22-04-2016 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 14 23 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 5 353 39.058 T 22-04-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 PANTHER PTHR10055:SF10 191 356 2.6E-166 T 22-04-2016 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 PANTHER PTHR10055:SF10 6 170 2.6E-166 T 22-04-2016 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 Gene3D G3DSA:1.10.240.10 228 318 2.6E-15 T 22-04-2016 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 7 352 8.8E-94 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 68 87 1.7E-28 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 18 34 1.7E-28 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 217 227 1.7E-28 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 144 165 1.7E-28 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 Pfam PF00579 tRNA synthetases class I (W and Y) 8 290 4.4E-78 T 22-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 PANTHER PTHR10055 191 356 2.6E-166 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 PANTHER PTHR10055 6 170 2.6E-166 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RM11_RS05295 524581e1538fbca07665e67d575c5ce1 356 Gene3D G3DSA:3.40.50.620 7 227 1.9E-86 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 Pfam PF08442 ATP-grasp domain 2 212 1.4E-67 T 22-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 Pfam PF00549 CoA-ligase 272 391 4.8E-27 T 22-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 PANTHER PTHR11815:SF1 1 396 2.8E-219 T 22-04-2016 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 Gene3D G3DSA:3.40.50.261 251 393 6.3E-66 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 SUPERFAMILY SSF52210 249 395 2.35E-54 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 PANTHER PTHR11815 1 396 2.8E-219 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 Gene3D G3DSA:3.30.470.20 106 249 4.9E-52 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 395 4.0E-151 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 Gene3D G3DSA:3.30.1490.20 22 105 1.2E-31 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 PIRSF PIRSF001554 1 398 4.8E-144 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 396 40.609 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 SUPERFAMILY SSF56059 1 248 5.77E-74 T 22-04-2016 RM11_RS06705 e9a42b69da4f831e56539091684fc1cb 398 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 267 291 - T 22-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS03330 e610a16a6c68ec342b932c49a2ac5ef4 594 Pfam PF01368 DHH family 96 219 2.3E-10 T 22-04-2016 IPR001667 DDH domain RM11_RS03330 e610a16a6c68ec342b932c49a2ac5ef4 594 PANTHER PTHR30255:SF2 13 593 4.8E-157 T 22-04-2016 RM11_RS03330 e610a16a6c68ec342b932c49a2ac5ef4 594 SUPERFAMILY SSF64182 70 466 2.09E-107 T 22-04-2016 RM11_RS03330 e610a16a6c68ec342b932c49a2ac5ef4 594 PANTHER PTHR30255 13 593 4.8E-157 T 22-04-2016 RM11_RS03330 e610a16a6c68ec342b932c49a2ac5ef4 594 Pfam PF02272 DHHA1 domain 398 459 8.9E-10 T 22-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RM11_RS03330 e610a16a6c68ec342b932c49a2ac5ef4 594 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 42 587 1.2E-153 T 22-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 Pfam PF08447 PAS fold 285 362 5.3E-12 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 Gene3D G3DSA:3.30.450.20 385 478 1.2E-5 T 22-04-2016 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 756 769 8.0E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 697 711 8.0E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 732 750 8.0E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 661 770 5.3E-24 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 SMART SM00388 546 615 6.8E-23 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 PANTHER PTHR24423 229 505 9.6E-107 T 22-04-2016 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 PANTHER PTHR24423 541 773 9.6E-107 T 22-04-2016 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 Gene3D G3DSA:1.10.287.130 551 600 1.2E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 Gene3D G3DSA:3.30.450.20 479 497 5.0E-5 T 22-04-2016 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 Gene3D G3DSA:3.30.450.20 533 550 5.0E-5 T 22-04-2016 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 SUPERFAMILY SSF47384 531 616 9.61E-23 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 Gene3D G3DSA:3.30.565.10 601 772 5.7E-45 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 285 381 1.2E-6 T 22-04-2016 IPR000014 PAS domain RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 SUPERFAMILY SSF55785 274 377 8.03E-13 T 22-04-2016 IPR000014 PAS domain RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 SUPERFAMILY SSF55874 604 770 3.41E-44 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 Pfam PF12860 PAS fold 393 495 1.4E-9 T 22-04-2016 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 SUPERFAMILY SSF55785 372 489 1.47E-5 T 22-04-2016 IPR000014 PAS domain RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 Pfam PF00512 His Kinase A (phospho-acceptor) domain 546 615 2.3E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 SMART SM00387 660 772 9.6E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02070 9cfbc71a4362f9eb363c926eb25161c7 773 Gene3D G3DSA:3.30.450.20 245 384 1.1E-17 T 22-04-2016 RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 SMART SM00490 506 589 2.9E-21 T 22-04-2016 IPR001650 Helicase, C-terminal RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 Pfam PF00270 DEAD/DEAH box helicase 278 433 5.2E-14 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 Pfam PF17191 RecG wedge domain 41 184 1.8E-8 T 22-04-2016 IPR033454 RecG, wedge domain RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 Gene3D G3DSA:3.40.50.300 456 638 5.2E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 Gene3D G3DSA:3.40.50.300 262 455 5.4E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 SUPERFAMILY SSF52540 453 654 5.32E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 SUPERFAMILY SSF50249 5 185 2.71E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 SMART SM00487 271 461 1.1E-24 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 SUPERFAMILY SSF52540 211 454 1.36E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 41 665 7.7E-204 T 22-04-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 Pfam PF00271 Helicase conserved C-terminal domain 477 588 2.3E-19 T 22-04-2016 IPR001650 Helicase, C-terminal RM11_RS03820 e13bb3cac19b31683d3e35ead49b799a 702 Gene3D G3DSA:2.40.50.140 60 149 1.3E-14 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00005 9f03040ddda07a9f1f8ce4497fe1e663 280 PANTHER PTHR31756:SF3 8 275 1.6E-97 T 22-04-2016 RM11_RS00005 9f03040ddda07a9f1f8ce4497fe1e663 280 PANTHER PTHR31756 8 275 1.6E-97 T 22-04-2016 RM11_RS00005 9f03040ddda07a9f1f8ce4497fe1e663 280 Pfam PF03618 Kinase/pyrophosphorylase 10 263 2.3E-89 T 22-04-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 RM11_RS00005 9f03040ddda07a9f1f8ce4497fe1e663 280 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 8 270 56.619 T 22-04-2016 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein RM11_RS05130 48a31cdad25c3b6caca6cd5eccbc49e5 767 SUPERFAMILY SSF103515 471 767 7.85E-37 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05130 48a31cdad25c3b6caca6cd5eccbc49e5 767 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 304 767 1.1E-34 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RM11_RS05130 48a31cdad25c3b6caca6cd5eccbc49e5 767 Pfam PF03797 Autotransporter beta-domain 496 749 1.2E-20 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05130 48a31cdad25c3b6caca6cd5eccbc49e5 767 SMART SM00869 493 754 3.6E-30 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05130 48a31cdad25c3b6caca6cd5eccbc49e5 767 SUPERFAMILY SSF51126 66 410 1.04E-11 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor RM11_RS05130 48a31cdad25c3b6caca6cd5eccbc49e5 767 Gene3D G3DSA:2.40.128.130 449 767 2.3E-37 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 SMART SM00388 240 306 8.3E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 SUPERFAMILY SSF55874 295 460 4.06E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 Gene3D G3DSA:1.10.287.130 230 302 1.9E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 242 305 1.0E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 3.4E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 3.4E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 Gene3D G3DSA:3.30.565.10 312 460 1.1E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 SUPERFAMILY SSF158472 186 236 1.18E-6 T 22-04-2016 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 SMART SM00304 186 239 3.3E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 Pfam PF00672 HAMP domain 167 235 1.8E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 SUPERFAMILY SSF47384 223 305 7.26E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 PANTHER PTHR24423 180 460 1.4E-54 T 22-04-2016 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 PANTHER PTHR24423 1 14 1.4E-54 T 22-04-2016 RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 446 5.0E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02050 6605427c1c9e7f730919af1e541d032e 460 SMART SM00387 351 460 4.0E-20 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00560 4f61b5a7a7f14c5732436e8ee9ae6063 148 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 141 5.0E-76 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RM11_RS00560 4f61b5a7a7f14c5732436e8ee9ae6063 148 PANTHER PTHR21272 1 145 6.6E-77 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RM11_RS00560 4f61b5a7a7f14c5732436e8ee9ae6063 148 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 148 62.511 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RM11_RS00560 4f61b5a7a7f14c5732436e8ee9ae6063 148 Gene3D G3DSA:3.40.50.9100 3 144 1.6E-59 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RM11_RS00560 4f61b5a7a7f14c5732436e8ee9ae6063 148 PIRSF PIRSF001399 1 147 4.8E-61 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RM11_RS00560 4f61b5a7a7f14c5732436e8ee9ae6063 148 SUPERFAMILY SSF52304 5 145 2.49E-56 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RM11_RS00560 4f61b5a7a7f14c5732436e8ee9ae6063 148 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 142 9.9E-54 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RM11_RS00560 4f61b5a7a7f14c5732436e8ee9ae6063 148 Pfam PF01220 Dehydroquinase class II 5 140 1.0E-53 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RM11_RS00560 4f61b5a7a7f14c5732436e8ee9ae6063 148 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 22-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RM11_RS00125 03188e88494c53742b3651f2975c21a9 107 PIRSF PIRSF000077 1 106 6.1E-43 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RM11_RS00125 03188e88494c53742b3651f2975c21a9 107 ProSitePatterns PS00194 Thioredoxin family active site. 23 41 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RM11_RS00125 03188e88494c53742b3651f2975c21a9 107 Pfam PF00085 Thioredoxin 5 103 6.4E-35 T 22-04-2016 IPR013766 Thioredoxin domain GO:0045454 RM11_RS00125 03188e88494c53742b3651f2975c21a9 107 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 104 1.7E-40 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RM11_RS00125 03188e88494c53742b3651f2975c21a9 107 SUPERFAMILY SSF52833 4 106 2.02E-38 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS00125 03188e88494c53742b3651f2975c21a9 107 PRINTS PR00421 Thioredoxin family signature 30 39 6.1E-10 T 22-04-2016 RM11_RS00125 03188e88494c53742b3651f2975c21a9 107 PRINTS PR00421 Thioredoxin family signature 70 81 6.1E-10 T 22-04-2016 RM11_RS00125 03188e88494c53742b3651f2975c21a9 107 PRINTS PR00421 Thioredoxin family signature 22 30 6.1E-10 T 22-04-2016 RM11_RS00125 03188e88494c53742b3651f2975c21a9 107 Gene3D G3DSA:3.40.30.10 5 104 7.1E-39 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS00125 03188e88494c53742b3651f2975c21a9 107 PANTHER PTHR10438 10 107 6.5E-41 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 Pfam PF00117 Glutamine amidotransferase class-I 11 194 7.5E-37 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 9 197 4.8E-69 T 22-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 SUPERFAMILY SSF52317 7 231 8.33E-54 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 Pfam PF00958 GMP synthase C terminal domain 426 517 2.6E-42 T 22-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 209 518 1.2E-145 T 22-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 Gene3D G3DSA:3.30.300.10 394 518 1.6E-50 T 22-04-2016 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 SUPERFAMILY SSF52402 188 439 3.31E-58 T 22-04-2016 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 SUPERFAMILY SSF54810 398 518 8.5E-51 T 22-04-2016 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 6 518 53.63 T 22-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 PANTHER PTHR11922:SF2 7 515 1.3E-271 T 22-04-2016 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 PANTHER PTHR11922 7 515 1.3E-271 T 22-04-2016 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 PRINTS PR00096 Glutamine amidotransferase superfamily signature 80 91 2.5E-6 T 22-04-2016 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 PRINTS PR00096 Glutamine amidotransferase superfamily signature 171 184 2.5E-6 T 22-04-2016 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 PRINTS PR00096 Glutamine amidotransferase superfamily signature 53 62 2.5E-6 T 22-04-2016 RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 Gene3D G3DSA:3.40.50.620 217 389 4.7E-59 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 Gene3D G3DSA:3.40.50.880 7 216 1.3E-57 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS00840 0359fc262308d80b08e9680db958d0de 518 Pfam PF02540 NAD synthase 215 288 5.6E-8 T 22-04-2016 IPR022310 NAD/GMP synthase RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 8.2E-30 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 22-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 SUPERFAMILY SSF46557 3 78 1.57E-26 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 PIRSF PIRSF006092 1 157 1.5E-53 T 22-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 156 1.7E-29 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 PANTHER PTHR30437 1 156 9.5E-66 T 22-04-2016 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 Gene3D G3DSA:3.10.50.30 78 156 1.4E-31 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 Gene3D G3DSA:1.10.287.180 1 75 4.8E-32 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 1.0E-59 T 22-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 155 31.692 T 22-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 SUPERFAMILY SSF54534 81 156 2.22E-23 T 22-04-2016 RM11_RS04630 c595fe53541421c618f788593e64f8b4 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 22-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 Pfam PF00344 SecY translocase 81 420 1.1E-114 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PANTHER PTHR10906:SF2 19 448 2.0E-196 T 22-04-2016 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 ProSitePatterns PS00756 Protein secY signature 2. 178 195 - T 22-04-2016 IPR030659 SecY conserved site RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 Gene3D G3DSA:1.10.3370.10 17 440 4.3E-159 T 22-04-2016 IPR023201 SecY subunit domain RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PRINTS PR00303 Preprotein translocase SecY subunit signature 318 340 2.3E-96 T 22-04-2016 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PRINTS PR00303 Preprotein translocase SecY subunit signature 120 143 2.3E-96 T 22-04-2016 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PRINTS PR00303 Preprotein translocase SecY subunit signature 79 99 2.3E-96 T 22-04-2016 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PRINTS PR00303 Preprotein translocase SecY subunit signature 277 296 2.3E-96 T 22-04-2016 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PRINTS PR00303 Preprotein translocase SecY subunit signature 27 45 2.3E-96 T 22-04-2016 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PRINTS PR00303 Preprotein translocase SecY subunit signature 405 423 2.3E-96 T 22-04-2016 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PRINTS PR00303 Preprotein translocase SecY subunit signature 185 208 2.3E-96 T 22-04-2016 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PRINTS PR00303 Preprotein translocase SecY subunit signature 373 391 2.3E-96 T 22-04-2016 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PRINTS PR00303 Preprotein translocase SecY subunit signature 159 184 2.3E-96 T 22-04-2016 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 SUPERFAMILY SSF103491 17 427 5.62E-128 T 22-04-2016 IPR023201 SecY subunit domain RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 24 432 1.4E-127 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 Hamap MF_01465 Protein translocase subunit SecY [secY]. 14 436 28.549 T 22-04-2016 IPR026593 Protein translocase subunit SecY RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PANTHER PTHR10906 19 448 2.0E-196 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RM11_RS04025 6b8d53a0e37df46a33f7076ccf25ee80 448 PIRSF PIRSF004557 5 444 6.5E-119 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RM11_RS01155 94b038ed3d8025835c0b36708b576f09 240 Pfam PF01895 PhoU domain 21 109 1.1E-19 T 22-04-2016 IPR026022 PhoU domain RM11_RS01155 94b038ed3d8025835c0b36708b576f09 240 Pfam PF01895 PhoU domain 131 208 3.1E-14 T 22-04-2016 IPR026022 PhoU domain RM11_RS01155 94b038ed3d8025835c0b36708b576f09 240 PANTHER PTHR10010 1 226 1.3E-61 T 22-04-2016 RM11_RS01155 94b038ed3d8025835c0b36708b576f09 240 Gene3D G3DSA:1.20.58.220 125 220 1.6E-26 T 22-04-2016 RM11_RS01155 94b038ed3d8025835c0b36708b576f09 240 SUPERFAMILY SSF109755 8 226 6.7E-61 T 22-04-2016 RM11_RS01155 94b038ed3d8025835c0b36708b576f09 240 PANTHER PTHR10010:SF14 1 226 1.3E-61 T 22-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RM11_RS01155 94b038ed3d8025835c0b36708b576f09 240 Gene3D G3DSA:1.20.58.220 6 114 4.3E-30 T 22-04-2016 RM11_RS01155 94b038ed3d8025835c0b36708b576f09 240 PIRSF PIRSF003107 3 223 3.2E-58 T 22-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RM11_RS01155 94b038ed3d8025835c0b36708b576f09 240 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 9 219 5.7E-66 T 22-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 SMART SM00228 417 490 1.1E-7 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 SMART SM00228 300 381 2.3E-14 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 Pfam PF13365 Trypsin-like peptidase domain 127 261 3.6E-31 T 22-04-2016 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 Gene3D G3DSA:2.30.42.10 302 398 5.2E-29 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 Pfam PF13180 PDZ domain 425 481 1.0E-7 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 Pfam PF13180 PDZ domain 300 390 3.2E-17 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 PRINTS PR00834 HtrA/DegQ protease family signature 254 271 5.1E-57 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 PRINTS PR00834 HtrA/DegQ protease family signature 232 249 5.1E-57 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 PRINTS PR00834 HtrA/DegQ protease family signature 198 222 5.1E-57 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 PRINTS PR00834 HtrA/DegQ protease family signature 339 351 5.1E-57 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 PRINTS PR00834 HtrA/DegQ protease family signature 157 177 5.1E-57 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 PRINTS PR00834 HtrA/DegQ protease family signature 136 148 5.1E-57 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 51 497 7.3E-142 T 22-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 SUPERFAMILY SSF50156 413 498 1.25E-13 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 SUPERFAMILY SSF50156 283 390 3.02E-23 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 Gene3D G3DSA:2.40.10.10 49 184 1.2E-32 T 22-04-2016 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 PANTHER PTHR22939 110 417 6.2E-106 T 22-04-2016 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 PANTHER PTHR22939 52 72 6.2E-106 T 22-04-2016 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 Gene3D G3DSA:2.30.42.10 431 498 2.3E-13 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 SUPERFAMILY SSF50494 49 292 8.38E-61 T 22-04-2016 IPR009003 Peptidase S1, PA clan RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 Gene3D G3DSA:2.40.10.10 190 301 2.0E-43 T 22-04-2016 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 PANTHER PTHR22939:SF79 110 417 6.2E-106 T 22-04-2016 RM11_RS02040 883a25010c08a52c0f5f594fe96f8aef 503 PANTHER PTHR22939:SF79 52 72 6.2E-106 T 22-04-2016 RM11_RS05420 eb99dc9b575312d7b7a5275580ab49a6 264 Gene3D G3DSA:3.40.50.2300 140 255 4.8E-23 T 22-04-2016 RM11_RS05420 eb99dc9b575312d7b7a5275580ab49a6 264 Pfam PF08281 Sigma-70, region 4 88 130 5.8E-6 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS05420 eb99dc9b575312d7b7a5275580ab49a6 264 PANTHER PTHR26402:SF413 140 254 1.1E-24 T 22-04-2016 RM11_RS05420 eb99dc9b575312d7b7a5275580ab49a6 264 SMART SM00448 140 250 6.1E-13 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS05420 eb99dc9b575312d7b7a5275580ab49a6 264 Gene3D G3DSA:1.10.10.10 87 131 3.4E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS05420 eb99dc9b575312d7b7a5275580ab49a6 264 SUPERFAMILY SSF52172 141 254 4.7E-22 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS05420 eb99dc9b575312d7b7a5275580ab49a6 264 PIRSF PIRSF036400 1 264 2.0E-145 T 22-04-2016 IPR014605 Signal transduction response regulator PhyR-like, alphaproteobacteria RM11_RS05420 eb99dc9b575312d7b7a5275580ab49a6 264 SUPERFAMILY SSF88659 85 131 3.27E-5 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS05420 eb99dc9b575312d7b7a5275580ab49a6 264 PANTHER PTHR26402 140 254 1.1E-24 T 22-04-2016 RM11_RS05420 eb99dc9b575312d7b7a5275580ab49a6 264 Pfam PF00072 Response regulator receiver domain 142 246 2.1E-13 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 SUPERFAMILY SSF50447 453 552 4.94E-16 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 SMART SM00863 653 706 6.6E-21 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 PANTHER PTHR11777 1 888 0.0 T 22-04-2016 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 PANTHER PTHR11777:SF9 1 888 0.0 T 22-04-2016 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 2.2E-32 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 PRINTS PR00980 Alanyl-tRNA synthetase signature 274 290 2.2E-32 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 PRINTS PR00980 Alanyl-tRNA synthetase signature 75 86 2.2E-32 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 2.2E-32 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 PRINTS PR00980 Alanyl-tRNA synthetase signature 298 311 2.2E-32 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 SUPERFAMILY SSF101353 246 462 8.5E-61 T 22-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 SUPERFAMILY SSF55681 3 245 3.73E-104 T 22-04-2016 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 Pfam PF02272 DHHA1 domain 812 881 5.8E-11 T 22-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 653 706 4.7E-19 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 Gene3D G3DSA:3.30.930.10 3 242 6.6E-109 T 22-04-2016 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 888 187.455 T 22-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 868 1.5E-284 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 SUPERFAMILY SSF55186 552 717 4.45E-50 T 22-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RM11_RS03980 8ac46c67dacf9f3fb632afca1ebc9143 888 Pfam PF01411 tRNA synthetases class II (A) 7 553 3.1E-209 T 22-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RM11_RS02785 49d992545a21896ea72e24cec2554171 357 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 2 337 5.4E-87 T 22-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RM11_RS02785 49d992545a21896ea72e24cec2554171 357 Pfam PF02504 Fatty acid synthesis protein 2 324 3.5E-92 T 22-04-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 UniPathway: UPA00085 RM11_RS02785 49d992545a21896ea72e24cec2554171 357 Gene3D G3DSA:3.40.718.10 2 334 5.0E-112 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RM11_RS02785 49d992545a21896ea72e24cec2554171 357 SUPERFAMILY SSF53659 2 337 9.36E-95 T 22-04-2016 RM11_RS02785 49d992545a21896ea72e24cec2554171 357 PANTHER PTHR30100:SF1 1 342 1.5E-109 T 22-04-2016 RM11_RS02785 49d992545a21896ea72e24cec2554171 357 PANTHER PTHR30100 1 342 1.5E-109 T 22-04-2016 RM11_RS02785 49d992545a21896ea72e24cec2554171 357 PIRSF PIRSF002465 1 340 1.1E-109 T 22-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RM11_RS02785 49d992545a21896ea72e24cec2554171 357 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 340 134.368 T 22-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RM11_RS06355 6b77cb58ee54258defdb11f752af132c 146 PRINTS PR00061 Ribosomal protein L19 signature 38 67 1.7E-35 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06355 6b77cb58ee54258defdb11f752af132c 146 PRINTS PR00061 Ribosomal protein L19 signature 92 117 1.7E-35 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06355 6b77cb58ee54258defdb11f752af132c 146 PRINTS PR00061 Ribosomal protein L19 signature 8 37 1.7E-35 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06355 6b77cb58ee54258defdb11f752af132c 146 SUPERFAMILY SSF50104 1 120 2.91E-46 T 22-04-2016 IPR008991 Translation protein SH3-like domain RM11_RS06355 6b77cb58ee54258defdb11f752af132c 146 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 117 7.8E-47 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06355 6b77cb58ee54258defdb11f752af132c 146 PIRSF PIRSF002191 1 142 1.6E-52 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06355 6b77cb58ee54258defdb11f752af132c 146 ProSitePatterns PS01015 Ribosomal protein L19 signature. 90 105 - T 22-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06355 6b77cb58ee54258defdb11f752af132c 146 PANTHER PTHR15680 2 146 2.6E-56 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06355 6b77cb58ee54258defdb11f752af132c 146 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 118 30.599 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06355 6b77cb58ee54258defdb11f752af132c 146 Pfam PF01245 Ribosomal protein L19 3 117 7.5E-48 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04890 bb6b1be0cfb1cea3cf5c70527ced7c82 401 SUPERFAMILY SSF56935 227 379 5.95E-8 T 22-04-2016 RM11_RS04890 bb6b1be0cfb1cea3cf5c70527ced7c82 401 SUPERFAMILY SSF56935 55 196 5.95E-8 T 22-04-2016 RM11_RS04890 bb6b1be0cfb1cea3cf5c70527ced7c82 401 Pfam PF02530 Porin subfamily 27 394 2.7E-117 T 22-04-2016 IPR003684 Porin, alpha proteobacteria type GO:0006810|GO:0015288|GO:0016020 RM11_RS05440 1832a8bc3f7f8ee366a151cab8546209 313 Pfam PF04216 Protein involved in formate dehydrogenase formation 28 309 6.3E-52 T 22-04-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 RM11_RS05440 1832a8bc3f7f8ee366a151cab8546209 313 PANTHER PTHR37689 8 313 6.2E-23 T 22-04-2016 RM11_RS05440 1832a8bc3f7f8ee366a151cab8546209 313 SUPERFAMILY SSF144020 28 310 2.62E-64 T 22-04-2016 IPR024064 FdhE-like RM11_RS05440 1832a8bc3f7f8ee366a151cab8546209 313 Gene3D G3DSA:3.90.1670.10 29 311 6.3E-56 T 22-04-2016 IPR024064 FdhE-like RM11_RS05440 1832a8bc3f7f8ee366a151cab8546209 313 PANTHER PTHR37689:SF1 8 313 6.2E-23 T 22-04-2016 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 PRINTS PR00126 ATP synthase gamma subunit signature 250 269 4.7E-29 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 PRINTS PR00126 ATP synthase gamma subunit signature 75 94 4.7E-29 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 PRINTS PR00126 ATP synthase gamma subunit signature 281 302 4.7E-29 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 PRINTS PR00126 ATP synthase gamma subunit signature 170 187 4.7E-29 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 289 302 - T 22-04-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 Gene3D G3DSA:3.40.1380.10 75 195 1.2E-29 T 22-04-2016 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 Gene3D G3DSA:1.10.287.80 253 298 2.6E-26 T 22-04-2016 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 PANTHER PTHR11693 1 303 6.2E-104 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 303 31.843 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 Pfam PF00231 ATP synthase 3 303 5.5E-83 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 SUPERFAMILY SSF52943 2 303 5.62E-81 T 22-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 Gene3D G3DSA:1.10.287.80 19 60 4.8E-28 T 22-04-2016 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 Gene3D G3DSA:1.10.287.80 218 252 4.8E-28 T 22-04-2016 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 PIRSF PIRSF039089 1 303 1.5E-103 T 22-04-2016 RM11_RS06095 ca5a712a182bd65fc274e49c6ba5b39d 303 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 303 1.1E-94 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS03320 8787bde7b2e7c3eb824b6f6709e7f2c7 245 SUPERFAMILY SSF55681 30 241 1.41E-62 T 22-04-2016 RM11_RS03320 8787bde7b2e7c3eb824b6f6709e7f2c7 245 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 57 239 7.4E-44 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RM11_RS03320 8787bde7b2e7c3eb824b6f6709e7f2c7 245 PIRSF PIRSF016262 24 244 4.8E-55 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RM11_RS03320 8787bde7b2e7c3eb824b6f6709e7f2c7 245 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 98 150 3.0E-24 T 22-04-2016 RM11_RS03320 8787bde7b2e7c3eb824b6f6709e7f2c7 245 Hamap MF_00013 Octanoyltransferase [lipB]. 26 241 35.025 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RM11_RS03320 8787bde7b2e7c3eb824b6f6709e7f2c7 245 PANTHER PTHR10993 25 239 5.2E-75 T 22-04-2016 RM11_RS03320 8787bde7b2e7c3eb824b6f6709e7f2c7 245 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 93 108 - T 22-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RM11_RS03320 8787bde7b2e7c3eb824b6f6709e7f2c7 245 Gene3D G3DSA:3.90.1550.10 26 239 1.3E-68 T 22-04-2016 RM11_RS03320 8787bde7b2e7c3eb824b6f6709e7f2c7 245 Pfam PF03099 Biotin/lipoate A/B protein ligase family 88 194 1.0E-7 T 22-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RM11_RS03320 8787bde7b2e7c3eb824b6f6709e7f2c7 245 PANTHER PTHR10993:SF10 25 239 5.2E-75 T 22-04-2016 RM11_RS05090 7ea02cdaf6b3207ebc1fd2a6d2a18628 1021 Gene3D G3DSA:2.40.128.130 683 1021 2.0E-39 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05090 7ea02cdaf6b3207ebc1fd2a6d2a18628 1021 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 548 1021 1.7E-34 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RM11_RS05090 7ea02cdaf6b3207ebc1fd2a6d2a18628 1021 Gene3D G3DSA:2.160.20.20 153 682 1.9E-25 T 22-04-2016 IPR012332 P22 tailspike C-terminal domain-like RM11_RS05090 7ea02cdaf6b3207ebc1fd2a6d2a18628 1021 SUPERFAMILY SSF103515 722 1021 7.85E-38 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05090 7ea02cdaf6b3207ebc1fd2a6d2a18628 1021 SUPERFAMILY SSF51126 78 667 3.45E-44 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor RM11_RS05090 7ea02cdaf6b3207ebc1fd2a6d2a18628 1021 SMART SM00869 748 1008 1.5E-24 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 Pfam PF00701 Dihydrodipicolinate synthetase family 2 288 1.0E-90 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 288 63.421 T 22-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 PANTHER PTHR12128 1 294 2.0E-125 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 Gene3D G3DSA:3.20.20.70 1 292 1.1E-115 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 PIRSF PIRSF001365 1 294 2.6E-95 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 6.7E-34 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 6.7E-34 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 6.7E-34 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 6.7E-34 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 SUPERFAMILY SSF51569 2 290 2.2E-104 T 22-04-2016 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 SMART SM01130 1 290 9.2E-143 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 PANTHER PTHR12128:SF34 1 294 2.0E-125 T 22-04-2016 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 288 4.1E-97 T 22-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS02150 7a0f3346bdb06b38024e0d8f060d84c8 294 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 164 - T 22-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 SMART SM00480 17 369 7.4E-120 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 253 372 1.7E-29 T 22-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 1.2E-30 T 22-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 SUPERFAMILY SSF55979 1 119 3.73E-24 T 22-04-2016 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 Gene3D G3DSA:3.10.150.10 128 255 1.8E-37 T 22-04-2016 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 PIRSF PIRSF000804 1 373 2.6E-114 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 372 3.4E-90 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 PANTHER PTHR30478 2 373 2.2E-117 T 22-04-2016 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 Gene3D G3DSA:3.10.150.10 1 120 3.9E-27 T 22-04-2016 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 Gene3D G3DSA:3.10.150.10 256 373 7.5E-36 T 22-04-2016 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 SUPERFAMILY SSF55979 252 373 3.56E-35 T 22-04-2016 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 SUPERFAMILY SSF55979 128 251 1.07E-27 T 22-04-2016 RM11_RS00550 e62dc25ce9749f40cf8233f423209dd3 373 Pfam PF02767 DNA polymerase III beta subunit, central domain 132 250 9.8E-33 T 22-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 PANTHER PTHR23135:SF2 1 465 3.9E-118 T 22-04-2016 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 SUPERFAMILY SSF51984 7 98 5.89E-13 T 22-04-2016 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 11 460 1.8E-104 T 22-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 Pfam PF08245 Mur ligase middle domain 126 303 8.0E-27 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 SUPERFAMILY SSF53244 323 463 3.66E-32 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 463 30.168 T 22-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 Gene3D G3DSA:3.90.190.20 325 460 5.7E-37 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 SUPERFAMILY SSF53623 118 321 3.79E-45 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 Gene3D G3DSA:3.40.50.720 7 96 5.4E-13 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 PANTHER PTHR23135 1 465 3.9E-118 T 22-04-2016 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 124 147 - T 22-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 RM11_RS04435 0d0b8059267815f43ec8fcbe98829856 466 Gene3D G3DSA:3.40.1190.10 98 323 5.4E-55 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS03225 9382aeb6243c4016247c2319ce441314 211 Pfam PF02660 Glycerol-3-phosphate acyltransferase 18 196 3.8E-52 T 22-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RM11_RS03225 9382aeb6243c4016247c2319ce441314 211 PANTHER PTHR30309 9 211 2.8E-70 T 22-04-2016 RM11_RS03225 9382aeb6243c4016247c2319ce441314 211 PANTHER PTHR30309:SF0 9 211 2.8E-70 T 22-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RM11_RS03225 9382aeb6243c4016247c2319ce441314 211 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 14 205 20.438 T 22-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RM11_RS03225 9382aeb6243c4016247c2319ce441314 211 SMART SM01207 17 197 4.5E-85 T 22-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RM11_RS03225 9382aeb6243c4016247c2319ce441314 211 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 15 205 1.3E-57 T 22-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RM11_RS02870 590cc49d579377c56f76bd6e7b2b89fd 193 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 46 187 5.3E-71 T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RM11_RS02870 590cc49d579377c56f76bd6e7b2b89fd 193 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 153 169 - T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RM11_RS02870 590cc49d579377c56f76bd6e7b2b89fd 193 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 73 179 8.2E-23 T 22-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RM11_RS02870 590cc49d579377c56f76bd6e7b2b89fd 193 PANTHER PTHR11995 5 193 8.4E-124 T 22-04-2016 RM11_RS02870 590cc49d579377c56f76bd6e7b2b89fd 193 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 35 186 38.64 T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RM11_RS02870 590cc49d579377c56f76bd6e7b2b89fd 193 PANTHER PTHR11995:SF22 5 193 8.4E-124 T 22-04-2016 RM11_RS02870 590cc49d579377c56f76bd6e7b2b89fd 193 SUPERFAMILY SSF56770 44 188 4.97E-64 T 22-04-2016 RM11_RS02870 590cc49d579377c56f76bd6e7b2b89fd 193 Gene3D G3DSA:3.40.50.700 59 184 4.6E-33 T 22-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RM11_RS00015 91f04fcc74a9ae77577c25c7760eccd5 293 Gene3D G3DSA:3.40.50.720 118 280 3.9E-47 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00015 91f04fcc74a9ae77577c25c7760eccd5 293 Gene3D G3DSA:3.40.192.10 13 117 1.1E-32 T 22-04-2016 RM11_RS00015 91f04fcc74a9ae77577c25c7760eccd5 293 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 18 100 5.9E-26 T 22-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS00015 91f04fcc74a9ae77577c25c7760eccd5 293 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 13 286 31.493 T 22-04-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS00015 91f04fcc74a9ae77577c25c7760eccd5 293 PANTHER PTHR21089 15 292 5.8E-77 T 22-04-2016 RM11_RS00015 91f04fcc74a9ae77577c25c7760eccd5 293 SUPERFAMILY SSF51735 113 278 2.29E-41 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00015 91f04fcc74a9ae77577c25c7760eccd5 293 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 18 281 9.5E-69 T 22-04-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS00015 91f04fcc74a9ae77577c25c7760eccd5 293 SUPERFAMILY SSF53223 12 111 1.55E-29 T 22-04-2016 RM11_RS00015 91f04fcc74a9ae77577c25c7760eccd5 293 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 126 201 1.8E-11 T 22-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RM11_RS03650 455504bd66416cf57ec362de773f4788 469 SUPERFAMILY SSF54534 101 246 4.91E-29 T 22-04-2016 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 Pfam PF05697 Bacterial trigger factor protein (TF) 1 147 3.1E-35 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 SUPERFAMILY SSF102735 1 130 1.57E-33 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 Gene3D G3DSA:3.10.50.40 163 219 7.3E-8 T 22-04-2016 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 SUPERFAMILY SSF109998 252 438 8.83E-45 T 22-04-2016 IPR027304 Trigger factor/SurA domain RM11_RS03650 455504bd66416cf57ec362de773f4788 469 PIRSF PIRSF003095 1 444 2.4E-113 T 22-04-2016 IPR005215 Trigger factor GO:0015031 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 Hamap MF_00303 Trigger factor [tig]. 1 427 19.924 T 22-04-2016 IPR005215 Trigger factor GO:0015031 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 PANTHER PTHR30560 1 439 1.5E-86 T 22-04-2016 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 Gene3D G3DSA:3.30.70.1050 1 122 6.7E-32 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 163 241 3.3E-12 T 22-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 264 421 2.1E-42 T 22-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 Gene3D G3DSA:1.10.3120.10 220 396 1.7E-49 T 22-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RM11_RS03650 455504bd66416cf57ec362de773f4788 469 TIGRFAM TIGR00115 tig: trigger factor 11 421 7.3E-120 T 22-04-2016 IPR005215 Trigger factor GO:0015031 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 Pfam PF00009 Elongation factor Tu GTP binding domain 10 267 1.5E-48 T 22-04-2016 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 Gene3D G3DSA:3.30.70.870 386 455 1.3E-8 T 22-04-2016 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 PANTHER PTHR23115 242 457 7.0E-209 T 22-04-2016 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 PANTHER PTHR23115 1 182 7.0E-209 T 22-04-2016 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 518 47.876 T 22-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 SUPERFAMILY SSF54980 384 457 2.19E-12 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 151 6.4E-21 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 SUPERFAMILY SSF52540 8 269 3.96E-83 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 PANTHER PTHR23115:SF69 242 457 7.0E-209 T 22-04-2016 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 PANTHER PTHR23115:SF69 1 182 7.0E-209 T 22-04-2016 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 Gene3D G3DSA:3.40.50.300 6 273 1.0E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 PRINTS PR00315 GTP-binding elongation factor signature 83 93 4.0E-12 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 PRINTS PR00315 GTP-binding elongation factor signature 13 26 4.0E-12 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 PRINTS PR00315 GTP-binding elongation factor signature 63 71 4.0E-12 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 PRINTS PR00315 GTP-binding elongation factor signature 99 110 4.0E-12 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 PRINTS PR00315 GTP-binding elongation factor signature 135 144 4.0E-12 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 Pfam PF16658 Class II release factor RF3, C-terminal domain 378 504 5.5E-39 T 22-04-2016 IPR032090 Peptide chain release factor 3, C-terminal RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 Gene3D G3DSA:2.40.30.10 285 385 8.2E-23 T 22-04-2016 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 4 516 3.3E-193 T 22-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 Pfam PF03144 Elongation factor Tu domain 2 305 371 2.1E-9 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RM11_RS00120 09385459b434d5403a44b32fcc0eafb1 525 SUPERFAMILY SSF50447 253 384 3.06E-27 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RM11_RS01780 231511a26bc1c25d5c1c980de1aa2d0a 207 PANTHER PTHR10851:SF0 17 207 3.1E-90 T 22-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RM11_RS01780 231511a26bc1c25d5c1c980de1aa2d0a 207 SUPERFAMILY SSF50475 14 207 7.44E-62 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RM11_RS01780 231511a26bc1c25d5c1c980de1aa2d0a 207 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 174 187 - T 22-04-2016 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RM11_RS01780 231511a26bc1c25d5c1c980de1aa2d0a 207 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 1 207 38.281 T 22-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RM11_RS01780 231511a26bc1c25d5c1c980de1aa2d0a 207 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 26 111 1.5E-22 T 22-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RM11_RS01780 231511a26bc1c25d5c1c980de1aa2d0a 207 PIRSF PIRSF000190 1 207 2.7E-70 T 22-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RM11_RS01780 231511a26bc1c25d5c1c980de1aa2d0a 207 PANTHER PTHR10851 17 207 3.1E-90 T 22-04-2016 RM11_RS01780 231511a26bc1c25d5c1c980de1aa2d0a 207 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 164 207 1.6E-15 T 22-04-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RM11_RS01780 231511a26bc1c25d5c1c980de1aa2d0a 207 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 15 207 2.3E-73 T 22-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RM11_RS01780 231511a26bc1c25d5c1c980de1aa2d0a 207 Gene3D G3DSA:2.30.110.10 14 207 3.2E-78 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RM11_RS03645 97e0b1c4318c365b1065bfd0b9eade5b 499 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 168 182 - T 22-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 RM11_RS03645 97e0b1c4318c365b1065bfd0b9eade5b 499 Pfam PF02934 GatB/GatE catalytic domain 24 311 4.2E-112 T 22-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 RM11_RS03645 97e0b1c4318c365b1065bfd0b9eade5b 499 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 21 496 2.8E-163 T 22-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RM11_RS03645 97e0b1c4318c365b1065bfd0b9eade5b 499 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 21 497 36.383 T 22-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RM11_RS03645 97e0b1c4318c365b1065bfd0b9eade5b 499 SUPERFAMILY SSF55931 23 319 1.5E-111 T 22-04-2016 RM11_RS03645 97e0b1c4318c365b1065bfd0b9eade5b 499 PANTHER PTHR11659 21 499 5.7E-249 T 22-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 RM11_RS03645 97e0b1c4318c365b1065bfd0b9eade5b 499 PANTHER PTHR11659:SF0 21 499 5.7E-249 T 22-04-2016 RM11_RS03645 97e0b1c4318c365b1065bfd0b9eade5b 499 SMART SM00845 351 496 4.3E-75 T 22-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RM11_RS03645 97e0b1c4318c365b1065bfd0b9eade5b 499 Pfam PF02637 GatB domain 351 496 9.4E-50 T 22-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RM11_RS03645 97e0b1c4318c365b1065bfd0b9eade5b 499 SUPERFAMILY SSF89095 320 425 7.41E-34 T 22-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 RM11_RS04165 1ad2f12e65e12ef589e8a3012236dbbd 250 PANTHER PTHR30085:SF4 28 247 9.7E-66 T 22-04-2016 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ GO:0006865|GO:0016021|GO:0043190 RM11_RS04165 1ad2f12e65e12ef589e8a3012236dbbd 250 Gene3D G3DSA:1.10.3720.10 30 240 1.5E-39 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04165 1ad2f12e65e12ef589e8a3012236dbbd 250 SUPERFAMILY SSF161098 32 226 1.14E-35 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04165 1ad2f12e65e12ef589e8a3012236dbbd 250 PANTHER PTHR30085 28 247 9.7E-66 T 22-04-2016 RM11_RS04165 1ad2f12e65e12ef589e8a3012236dbbd 250 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 53 240 5.6E-12 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04165 1ad2f12e65e12ef589e8a3012236dbbd 250 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 31 135 7.6E-19 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RM11_RS05105 afcdb19d48f08ad327f4c4c97e2dae81 318 SUPERFAMILY SSF81345 4 312 1.44E-64 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS05105 afcdb19d48f08ad327f4c4c97e2dae81 318 PANTHER PTHR30472:SF27 1 318 1.3E-124 T 22-04-2016 RM11_RS05105 afcdb19d48f08ad327f4c4c97e2dae81 318 PANTHER PTHR30472 1 318 1.3E-124 T 22-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RM11_RS05105 afcdb19d48f08ad327f4c4c97e2dae81 318 Gene3D G3DSA:1.10.3470.10 5 314 2.3E-68 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS05105 afcdb19d48f08ad327f4c4c97e2dae81 318 Pfam PF01032 FecCD transport family 11 312 9.2E-64 T 22-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RM11_RS05140 26a61f7a79887be4309b45e633abaefc 62 Gene3D G3DSA:2.40.128.130 19 58 2.3E-4 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05140 26a61f7a79887be4309b45e633abaefc 62 SUPERFAMILY SSF103515 3 60 1.31E-5 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05140 26a61f7a79887be4309b45e633abaefc 62 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 23 58 0.0011 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RM11_RS03720 aa6cd328af913b0ef63ef1b39ce4cd0b 138 SUPERFAMILY SSF57716 97 135 5.56E-8 T 22-04-2016 RM11_RS03720 aa6cd328af913b0ef63ef1b39ce4cd0b 138 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 95 130 8.8E-11 T 22-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RM11_RS03720 aa6cd328af913b0ef63ef1b39ce4cd0b 138 SUPERFAMILY SSF109635 7 96 2.48E-32 T 22-04-2016 RM11_RS03720 aa6cd328af913b0ef63ef1b39ce4cd0b 138 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 18 127 2.9E-43 T 22-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RM11_RS03720 aa6cd328af913b0ef63ef1b39ce4cd0b 138 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 14 136 27.442 T 22-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RM11_RS03720 aa6cd328af913b0ef63ef1b39ce4cd0b 138 PANTHER PTHR33823 9 137 9.5E-42 T 22-04-2016 RM11_RS03720 aa6cd328af913b0ef63ef1b39ce4cd0b 138 PANTHER PTHR33823:SF2 9 137 9.5E-42 T 22-04-2016 RM11_RS00970 81dfa9d818c8947fe1c5843a2491f71e 331 PANTHER PTHR18895:SF70 158 318 1.3E-23 T 22-04-2016 RM11_RS00970 81dfa9d818c8947fe1c5843a2491f71e 331 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 261 267 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RM11_RS00970 81dfa9d818c8947fe1c5843a2491f71e 331 Gene3D G3DSA:3.40.50.150 157 312 1.8E-18 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS00970 81dfa9d818c8947fe1c5843a2491f71e 331 SUPERFAMILY SSF53335 156 317 7.29E-23 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS00970 81dfa9d818c8947fe1c5843a2491f71e 331 Pfam PF05175 Methyltransferase small domain 159 327 7.1E-46 T 22-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RM11_RS00970 81dfa9d818c8947fe1c5843a2491f71e 331 PANTHER PTHR18895 158 318 1.3E-23 T 22-04-2016 RM11_RS00275 a3c8a774ee75f4f1e0b9c2aa857ce865 135 Gene3D G3DSA:3.40.50.510 1 129 1.4E-39 T 22-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RM11_RS00275 a3c8a774ee75f4f1e0b9c2aa857ce865 135 SUPERFAMILY SSF53062 1 130 6.41E-37 T 22-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RM11_RS00275 a3c8a774ee75f4f1e0b9c2aa857ce865 135 PANTHER PTHR33799 2 125 1.7E-38 T 22-04-2016 RM11_RS00275 a3c8a774ee75f4f1e0b9c2aa857ce865 135 Pfam PF03610 PTS system fructose IIA component 3 106 7.7E-27 T 22-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 SUPERFAMILY SSF54980 398 511 5.28E-28 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 Pfam PF00009 Elongation factor Tu GTP binding domain 2 195 5.3E-57 T 22-04-2016 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 Gene3D G3DSA:2.40.30.10 204 296 3.3E-23 T 22-04-2016 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 145 1.5E-23 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 PRINTS PR00315 GTP-binding elongation factor signature 121 130 3.4E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 PRINTS PR00315 GTP-binding elongation factor signature 69 79 3.4E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 PRINTS PR00315 GTP-binding elongation factor signature 5 18 3.4E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 PRINTS PR00315 GTP-binding elongation factor signature 85 96 3.4E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 PRINTS PR00315 GTP-binding elongation factor signature 49 57 3.4E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 Gene3D G3DSA:3.30.70.870 301 399 4.7E-33 T 22-04-2016 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 3 598 2.1E-275 T 22-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 Pfam PF00679 Elongation factor G C-terminus 396 480 3.7E-22 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 SUPERFAMILY SSF50447 149 296 1.39E-28 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 Gene3D G3DSA:2.40.50.250 482 576 1.6E-40 T 22-04-2016 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 PANTHER PTHR23115:SF14 2 592 1.3E-261 T 22-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 SUPERFAMILY SSF54980 301 386 1.22E-13 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 PANTHER PTHR23115 2 592 1.3E-261 T 22-04-2016 RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 Gene3D G3DSA:3.40.50.300 2 203 3.5E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 Gene3D G3DSA:3.30.70.240 400 481 7.1E-31 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 SUPERFAMILY SSF52540 3 198 1.31E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 SMART SM00838 395 483 0.0016 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RM11_RS00780 f081ac747a215b39065b51282a759d3b 608 Pfam PF03144 Elongation factor Tu domain 2 217 288 1.2E-12 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 Gene3D G3DSA:3.30.565.10 326 470 1.1E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 SUPERFAMILY SSF47384 243 315 5.69E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 SMART SM00387 360 471 4.1E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 362 469 2.1E-10 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 PANTHER PTHR24423:SF496 202 469 1.1E-43 T 22-04-2016 RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 PANTHER PTHR24423:SF496 1 8 1.1E-43 T 22-04-2016 RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 PANTHER PTHR24423 202 469 1.1E-43 T 22-04-2016 RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 PANTHER PTHR24423 1 8 1.1E-43 T 22-04-2016 RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 1.0E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 449 1.0E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS02015 f3b5852327ac7a2321098673644aa92d 474 SUPERFAMILY SSF55874 324 470 1.17E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS02665 0d40150422c83e6a7f81127e9de5c352 168 Pfam PF00011 Hsp20/alpha crystallin family 44 140 2.7E-18 T 22-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RM11_RS02665 0d40150422c83e6a7f81127e9de5c352 168 Gene3D G3DSA:2.60.40.790 4 141 1.9E-22 T 22-04-2016 IPR008978 HSP20-like chaperone RM11_RS02665 0d40150422c83e6a7f81127e9de5c352 168 SUPERFAMILY SSF49764 6 137 4.88E-25 T 22-04-2016 IPR008978 HSP20-like chaperone RM11_RS02665 0d40150422c83e6a7f81127e9de5c352 168 PANTHER PTHR11527 5 147 1.9E-51 T 22-04-2016 IPR031107 Small heat shock protein HSP20 RM11_RS02665 0d40150422c83e6a7f81127e9de5c352 168 PANTHER PTHR11527:SF145 5 147 1.9E-51 T 22-04-2016 RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 Pfam PF03461 TRCF domain 1023 1108 1.6E-24 T 22-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 31 1119 27.348 T 22-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 SUPERFAMILY SSF52540 15 346 4.96E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 SMART SM00982 1020 1120 4.4E-41 T 22-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 Pfam PF00270 DEAD/DEAH box helicase 620 777 1.4E-14 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 Gene3D G3DSA:3.30.2060.10 139 210 2.7E-11 T 22-04-2016 RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 SUPERFAMILY SSF52540 540 798 1.58E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 SUPERFAMILY SSF143517 1007 1160 3.53E-41 T 22-04-2016 RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 153 1093 0.0 T 22-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 SMART SM01058 495 591 1.9E-41 T 22-04-2016 IPR003711 CarD-like/TRCF domain RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 Gene3D G3DSA:3.40.50.300 609 801 9.7E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 SMART SM00487 615 802 5.0E-31 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 PANTHER PTHR14025 403 1156 0.0 T 22-04-2016 RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 SMART SM00490 841 925 1.4E-18 T 22-04-2016 IPR001650 Helicase, C-terminal RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 Pfam PF02559 CarD-like/TRCF domain 496 589 6.5E-23 T 22-04-2016 IPR003711 CarD-like/TRCF domain RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 PANTHER PTHR14025:SF21 403 1156 0.0 T 22-04-2016 RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 Gene3D G3DSA:3.40.50.300 802 978 4.4E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 SUPERFAMILY SSF52540 365 484 1.76E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 SUPERFAMILY SSF141259 487 563 8.11E-20 T 22-04-2016 IPR003711 CarD-like/TRCF domain RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 Pfam PF00271 Helicase conserved C-terminal domain 821 924 5.1E-17 T 22-04-2016 IPR001650 Helicase, C-terminal RM11_RS02965 6a7635c0239a8fb4bb4af7eb1b559d6a 1166 SUPERFAMILY SSF52540 797 1005 4.19E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01400 f6f4b918963fb3c3e42d9bdbc28cf6be 334 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 11 330 1.3E-92 T 22-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS01400 f6f4b918963fb3c3e42d9bdbc28cf6be 334 SUPERFAMILY SSF55120 77 330 1.75E-72 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS01400 f6f4b918963fb3c3e42d9bdbc28cf6be 334 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 136 150 - T 22-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS01400 f6f4b918963fb3c3e42d9bdbc28cf6be 334 SUPERFAMILY SSF55174 13 68 7.74E-11 T 22-04-2016 RM11_RS01400 f6f4b918963fb3c3e42d9bdbc28cf6be 334 Gene3D G3DSA:3.10.290.10 14 64 7.1E-11 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS01400 f6f4b918963fb3c3e42d9bdbc28cf6be 334 PANTHER PTHR11079:SF73 4 333 8.2E-121 T 22-04-2016 RM11_RS01400 f6f4b918963fb3c3e42d9bdbc28cf6be 334 PANTHER PTHR11079 4 333 8.2E-121 T 22-04-2016 RM11_RS01400 f6f4b918963fb3c3e42d9bdbc28cf6be 334 Pfam PF00849 RNA pseudouridylate synthase 89 259 2.3E-28 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS01400 f6f4b918963fb3c3e42d9bdbc28cf6be 334 SMART SM00363 14 73 3.9E-9 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS01400 f6f4b918963fb3c3e42d9bdbc28cf6be 334 Pfam PF01479 S4 domain 14 62 6.3E-9 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS02020 683ad6993b401308048d7c0155348608 245 Gene3D G3DSA:1.25.40.10 111 230 8.3E-13 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS02020 683ad6993b401308048d7c0155348608 245 Pfam PF14559 Tetratricopeptide repeat 176 226 9.1E-6 T 22-04-2016 RM11_RS02020 683ad6993b401308048d7c0155348608 245 SUPERFAMILY SSF48452 119 233 1.44E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 1 372 40.826 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 SUPERFAMILY SSF46565 3 107 1.27E-32 T 22-04-2016 IPR001623 DnaJ domain RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 SUPERFAMILY SSF49493 259 347 6.67E-25 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 PANTHER PTHR24078:SF190 4 358 9.2E-150 T 22-04-2016 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 Gene3D G3DSA:2.10.230.10 142 211 2.2E-22 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 PANTHER PTHR24078 4 358 9.2E-150 T 22-04-2016 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 PRINTS PR00625 DnaJ domain signature 41 61 1.6E-28 T 22-04-2016 IPR001623 DnaJ domain RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 PRINTS PR00625 DnaJ domain signature 61 80 1.6E-28 T 22-04-2016 IPR001623 DnaJ domain RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 PRINTS PR00625 DnaJ domain signature 6 24 1.6E-28 T 22-04-2016 IPR001623 DnaJ domain RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 PRINTS PR00625 DnaJ domain signature 24 39 1.6E-28 T 22-04-2016 IPR001623 DnaJ domain RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 SMART SM00271 3 61 2.4E-31 T 22-04-2016 IPR001623 DnaJ domain RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 Pfam PF00684 DnaJ central domain 148 207 6.4E-13 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 22-04-2016 IPR018253 DnaJ domain, conserved site RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 Gene3D G3DSA:2.60.260.20 257 337 1.1E-25 T 22-04-2016 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 Gene3D G3DSA:2.60.260.20 106 141 2.7E-23 T 22-04-2016 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 Gene3D G3DSA:2.60.260.20 212 255 2.7E-23 T 22-04-2016 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 Gene3D G3DSA:1.10.287.110 2 102 6.5E-34 T 22-04-2016 IPR001623 DnaJ domain RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 4 352 8.6E-133 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 Pfam PF00226 DnaJ domain 4 66 4.0E-27 T 22-04-2016 IPR001623 DnaJ domain RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 Pfam PF01556 DnaJ C terminal domain 122 336 8.3E-44 T 22-04-2016 IPR002939 Chaperone DnaJ, C-terminal RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 SUPERFAMILY SSF57938 135 212 4.97E-21 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 SUPERFAMILY SSF49493 115 170 1.14E-20 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RM11_RS00310 b1b49903b38f9bdd501a5adf7ce8421d 380 SUPERFAMILY SSF49493 214 263 1.14E-20 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RM11_RS06320 5ab2dc1eb3290aacfb6bed3e221bb321 353 PANTHER PTHR30258:SF3 21 132 8.2E-38 T 22-04-2016 RM11_RS06320 5ab2dc1eb3290aacfb6bed3e221bb321 353 PANTHER PTHR30258:SF3 173 324 8.2E-38 T 22-04-2016 RM11_RS06320 5ab2dc1eb3290aacfb6bed3e221bb321 353 Pfam PF00437 Type II/IV secretion system protein 22 334 3.9E-55 T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RM11_RS06320 5ab2dc1eb3290aacfb6bed3e221bb321 353 PANTHER PTHR30258 21 132 8.2E-38 T 22-04-2016 RM11_RS06320 5ab2dc1eb3290aacfb6bed3e221bb321 353 PANTHER PTHR30258 173 324 8.2E-38 T 22-04-2016 RM11_RS06320 5ab2dc1eb3290aacfb6bed3e221bb321 353 Gene3D G3DSA:3.30.450.90 21 114 1.7E-15 T 22-04-2016 RM11_RS06320 5ab2dc1eb3290aacfb6bed3e221bb321 353 SUPERFAMILY SSF52540 15 139 1.35E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06320 5ab2dc1eb3290aacfb6bed3e221bb321 353 SUPERFAMILY SSF52540 169 332 1.35E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06320 5ab2dc1eb3290aacfb6bed3e221bb321 353 Gene3D G3DSA:3.40.50.300 172 330 8.6E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06320 5ab2dc1eb3290aacfb6bed3e221bb321 353 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 27 343 2.4E-89 T 22-04-2016 IPR014155 Type IV secretion system protein VirB11 GO:0005737|GO:0006810|GO:0009405 RM11_RS00885 a591fc7540781a762fdf263ef2be319e 74 Gene3D G3DSA:3.40.30.10 1 72 1.6E-26 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS00885 a591fc7540781a762fdf263ef2be319e 74 PANTHER PTHR34386 1 72 6.2E-29 T 22-04-2016 RM11_RS00885 a591fc7540781a762fdf263ef2be319e 74 Pfam PF00462 Glutaredoxin 3 61 7.9E-15 T 22-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RM11_RS00885 a591fc7540781a762fdf263ef2be319e 74 SUPERFAMILY SSF52833 1 70 3.85E-20 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS00885 a591fc7540781a762fdf263ef2be319e 74 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 72 4.2E-29 T 22-04-2016 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 RM11_RS00885 a591fc7540781a762fdf263ef2be319e 74 PANTHER PTHR34386:SF3 1 72 6.2E-29 T 22-04-2016 RM11_RS04675 020119734744250521d87368c547b861 698 SUPERFAMILY SSF52317 263 517 2.52E-46 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS04675 020119734744250521d87368c547b861 698 PANTHER PTHR37947 10 680 6.6E-45 T 22-04-2016 RM11_RS04675 020119734744250521d87368c547b861 698 Gene3D G3DSA:3.40.50.880 257 516 3.0E-32 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS04675 020119734744250521d87368c547b861 698 Pfam PF07090 Putative glutamine amidotransferase 369 515 5.6E-7 T 22-04-2016 IPR010768 Putative glutamine amidotransferase RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 SUPERFAMILY SSF48150 18 242 1.16E-71 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 PANTHER PTHR10359 19 324 1.4E-86 T 22-04-2016 RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 Pfam PF14815 NUDIX domain 255 358 3.8E-18 T 22-04-2016 IPR029119 MutY, C-terminal RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 ProSitePatterns PS01155 Endonuclease III family signature. 124 153 - T 22-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 58 191 1.8E-19 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 212 228 1.3E-4 T 22-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 SUPERFAMILY SSF55811 240 360 2.43E-18 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 Gene3D G3DSA:1.10.1670.10 146 244 9.6E-39 T 22-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 SMART SM00478 61 210 9.6E-47 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 SMART SM00525 211 231 0.001 T 22-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 21 285 1.7E-95 T 22-04-2016 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 Gene3D G3DSA:1.10.340.30 49 145 1.6E-41 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RM11_RS01915 5a77a6936dad9da37351e7f5d51c4551 368 Gene3D G3DSA:3.90.79.10 254 360 9.2E-11 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 SUPERFAMILY SSF47384 220 284 1.75E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 451 2.3E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 Gene3D G3DSA:3.30.565.10 271 452 4.4E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 Gene3D G3DSA:1.10.287.130 223 270 2.1E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 SMART SM00387 337 454 2.0E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 98 194 1.2E-7 T 22-04-2016 IPR000014 PAS domain RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 Pfam PF00989 PAS fold 98 154 3.2E-5 T 22-04-2016 IPR013767 PAS fold GO:0006355 RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 SMART SM00388 217 285 3.6E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 Gene3D G3DSA:3.30.450.20 99 206 5.8E-11 T 22-04-2016 RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 SUPERFAMILY SSF55785 98 206 5.64E-11 T 22-04-2016 IPR000014 PAS domain RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 9.8E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 432 9.8E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 451 9.8E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 Pfam PF00512 His Kinase A (phospho-acceptor) domain 223 283 4.4E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 SUPERFAMILY SSF55874 294 452 2.75E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS01420 c49cb6caef6f4531255f76686d7e4df1 455 PANTHER PTHR24423 84 452 2.3E-62 T 22-04-2016 RM11_RS00555 fdcca5cc359cfb96137ce3e14ba50f54 377 ProSitePatterns PS00617 RecF protein signature 1. 127 147 - T 22-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RM11_RS00555 fdcca5cc359cfb96137ce3e14ba50f54 377 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 9 354 6.6E-52 T 22-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RM11_RS00555 fdcca5cc359cfb96137ce3e14ba50f54 377 Gene3D G3DSA:3.40.50.300 245 364 9.0E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00555 fdcca5cc359cfb96137ce3e14ba50f54 377 Gene3D G3DSA:3.40.50.300 11 176 9.0E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00555 fdcca5cc359cfb96137ce3e14ba50f54 377 Pfam PF02463 RecF/RecN/SMC N terminal domain 10 345 3.2E-15 T 22-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RM11_RS00555 fdcca5cc359cfb96137ce3e14ba50f54 377 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 377 82.676 T 22-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RM11_RS00555 fdcca5cc359cfb96137ce3e14ba50f54 377 ProSitePatterns PS00618 RecF protein signature 2. 319 337 - T 22-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RM11_RS00555 fdcca5cc359cfb96137ce3e14ba50f54 377 SUPERFAMILY SSF52540 11 364 2.66E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03560 cb489a17ec21808084ca90475319f058 229 SUPERFAMILY SSF55469 7 224 2.22E-49 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 RM11_RS03560 cb489a17ec21808084ca90475319f058 229 PANTHER PTHR23026:SF90 1 226 1.4E-42 T 22-04-2016 RM11_RS03560 cb489a17ec21808084ca90475319f058 229 Gene3D G3DSA:3.40.109.10 8 67 4.6E-49 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 RM11_RS03560 cb489a17ec21808084ca90475319f058 229 Gene3D G3DSA:3.40.109.10 122 224 4.6E-49 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 RM11_RS03560 cb489a17ec21808084ca90475319f058 229 PANTHER PTHR23026 1 226 1.4E-42 T 22-04-2016 RM11_RS03560 cb489a17ec21808084ca90475319f058 229 Pfam PF00881 Nitroreductase family 12 201 3.7E-40 T 22-04-2016 IPR029479 Nitroreductase RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 267 272 1.1E-27 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 291 305 1.1E-27 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 142 159 1.1E-27 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 1.1E-27 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 49 71 1.1E-27 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PRINTS PR00101 Aspartate carbamoyltransferase signature 87 96 1.1E-27 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 12 312 38.124 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 59 78 1.3E-18 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 143 154 1.3E-18 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 275 298 1.3E-18 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 263 272 1.3E-18 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 13 155 4.2E-33 T 22-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 13 310 6.9E-91 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 Gene3D G3DSA:3.40.50.1370 155 289 1.7E-48 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 162 308 4.7E-22 T 22-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 Gene3D G3DSA:3.40.50.1370 13 154 1.5E-43 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 59 66 - T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 SUPERFAMILY SSF53671 10 311 1.26E-92 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PANTHER PTHR11405:SF16 12 310 3.0E-118 T 22-04-2016 RM11_RS03215 98ea25042ebad6883e7c9237281e53ca 321 PANTHER PTHR11405 12 310 3.0E-118 T 22-04-2016 RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 PRINTS PR00599 Methionine aminopeptidase-1 signature 206 218 9.7E-20 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 PRINTS PR00599 Methionine aminopeptidase-1 signature 105 121 9.7E-20 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 PRINTS PR00599 Methionine aminopeptidase-1 signature 175 187 9.7E-20 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 PRINTS PR00599 Methionine aminopeptidase-1 signature 83 96 9.7E-20 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 Gene3D G3DSA:3.90.230.10 22 268 9.5E-95 T 22-04-2016 IPR000994 Peptidase M24, structural domain RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 181 199 - T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 18 263 3.8E-88 T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 Pfam PF00557 Metallopeptidase family M24 27 254 8.7E-51 T 22-04-2016 IPR000994 Peptidase M24, structural domain RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 SUPERFAMILY SSF55920 19 271 1.31E-88 T 22-04-2016 IPR000994 Peptidase M24, structural domain RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 PANTHER PTHR10804:SF82 3 267 2.8E-122 T 22-04-2016 RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 Hamap MF_01974 Methionine aminopeptidase [map]. 18 264 38.516 T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RM11_RS03140 edc2eaa7119a31969bc24bc1a9ff21e7 276 PANTHER PTHR10804 3 267 2.8E-122 T 22-04-2016 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 PANTHER PTHR11548 1 264 6.3E-178 T 22-04-2016 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 Pfam PF00303 Thymidylate synthase 2 264 1.9E-118 T 22-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 Gene3D G3DSA:3.30.572.10 1 264 4.9E-126 T 22-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 22-04-2016 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 44.904 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 2.0E-94 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 4.1E-40 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 2.3E-49 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 2.3E-49 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 2.3E-49 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 2.3E-49 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 2.3E-49 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04320 aff2a78fc66d79b6220a81592e94cc35 264 SUPERFAMILY SSF55831 1 264 4.32E-125 T 22-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RM11_RS04085 c15bbc5a2658798eb0b03b353eb21c63 66 PANTHER PTHR10916 1 60 2.8E-21 T 22-04-2016 RM11_RS04085 c15bbc5a2658798eb0b03b353eb21c63 66 Gene3D G3DSA:1.10.287.310 1 60 3.4E-26 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04085 c15bbc5a2658798eb0b03b353eb21c63 66 SUPERFAMILY SSF46561 1 60 1.44E-20 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04085 c15bbc5a2658798eb0b03b353eb21c63 66 Pfam PF00831 Ribosomal L29 protein 5 60 6.7E-23 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04085 c15bbc5a2658798eb0b03b353eb21c63 66 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.7E-21 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04085 c15bbc5a2658798eb0b03b353eb21c63 66 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 17.856 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03425 a302fd83a8efd46c072302c7b27de363 748 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 313 513 2.6E-16 T 22-04-2016 IPR004477 ComEC/Rec2-related protein RM11_RS03425 a302fd83a8efd46c072302c7b27de363 748 PANTHER PTHR30619:SF2 72 606 6.5E-49 T 22-04-2016 RM11_RS03425 a302fd83a8efd46c072302c7b27de363 748 Pfam PF03772 Competence protein 292 579 9.0E-51 T 22-04-2016 IPR004477 ComEC/Rec2-related protein RM11_RS03425 a302fd83a8efd46c072302c7b27de363 748 Pfam PF13567 Domain of unknown function (DUF4131) 81 241 1.1E-9 T 22-04-2016 IPR025405 Domain of unknown function DUF4131 RM11_RS03425 a302fd83a8efd46c072302c7b27de363 748 PANTHER PTHR30619 72 606 6.5E-49 T 22-04-2016 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 PANTHER PTHR20854:SF38 2 224 2.7E-44 T 22-04-2016 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 Pfam PF00459 Inositol monophosphatase family 16 232 1.0E-43 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 87 100 - T 22-04-2016 IPR020583 Inositol monophosphatase, metal-binding site RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 210 224 - T 22-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 Gene3D G3DSA:3.40.190.80 166 263 5.0E-16 T 22-04-2016 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 136 159 2.2E-14 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 175 196 2.2E-14 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 207 231 2.2E-14 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 43 63 2.2E-14 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 87 103 2.2E-14 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 65 81 2.2E-14 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 PANTHER PTHR20854 2 224 2.7E-44 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 Gene3D G3DSA:3.30.540.10 10 152 2.1E-39 T 22-04-2016 RM11_RS01250 6b968cee70d8aba0767f99df55c2d477 267 SUPERFAMILY SSF56655 9 263 7.59E-63 T 22-04-2016 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 Pfam PF05192 MutS domain III 300 598 1.4E-30 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 SMART SM00534 655 842 8.7E-109 T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 Pfam PF05188 MutS domain II 152 279 8.1E-20 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 Pfam PF05190 MutS family domain IV 461 556 6.4E-21 T 22-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 Gene3D G3DSA:3.30.420.110 151 286 2.5E-25 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 SUPERFAMILY SSF55271 23 139 9.94E-40 T 22-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 26 901 22.894 T 22-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 PANTHER PTHR11361 8 911 0.0 T 22-04-2016 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 26 907 1.2E-249 T 22-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 Pfam PF01624 MutS domain I 27 143 5.5E-42 T 22-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 SUPERFAMILY SSF52540 606 846 1.77E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 Gene3D G3DSA:3.40.50.300 606 846 2.8E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 PANTHER PTHR11361:SF86 8 911 0.0 T 22-04-2016 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 SUPERFAMILY SSF53150 138 297 5.89E-30 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 SMART SM00533 314 630 5.8E-77 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 Pfam PF00488 MutS domain V 658 845 6.5E-85 T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 PIRSF PIRSF037677 3 892 5.6E-163 T 22-04-2016 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 Gene3D G3DSA:3.40.1170.10 22 144 5.9E-51 T 22-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 Gene3D G3DSA:1.10.1420.10 295 501 4.1E-40 T 22-04-2016 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 SUPERFAMILY SSF48334 298 603 3.53E-71 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RM11_RS00460 63ce4b1b2a3c66e7092dd98b6b241197 911 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 736 752 - T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 PANTHER PTHR30050 177 521 8.7E-146 T 22-04-2016 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 PANTHER PTHR30050 52 153 8.7E-146 T 22-04-2016 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 429 497 9.8E-32 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 ProSitePatterns PS01008 DnaA protein signature. 478 497 - T 22-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 54 519 28.615 T 22-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 Pfam PF11638 DnaA N-terminal domain 56 117 2.2E-18 T 22-04-2016 IPR024633 DnaA N-terminal domain RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 SUPERFAMILY SSF48295 419 518 9.16E-36 T 22-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 311 338 8.0E-42 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 278 292 8.0E-42 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 478 497 8.0E-42 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 214 234 8.0E-42 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 246 260 8.0E-42 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 Gene3D G3DSA:1.10.8.60 346 419 1.1E-10 T 22-04-2016 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 Pfam PF00308 Bacterial dnaA protein 179 402 2.2E-81 T 22-04-2016 IPR013317 Chromosomal replication initiator protein DnaA RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 Gene3D G3DSA:3.40.50.300 171 343 9.6E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 SUPERFAMILY SSF52540 179 396 4.28E-32 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 Gene3D G3DSA:1.10.1750.10 420 519 8.6E-40 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 SMART SM00760 428 497 2.2E-41 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 SMART SM00382 213 340 5.1E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 58 517 6.4E-143 T 22-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 PANTHER PTHR30050:SF2 177 521 8.7E-146 T 22-04-2016 RM11_RS00545 faf55f019c9a290d78709e7f44141ce1 523 PANTHER PTHR30050:SF2 52 153 8.7E-146 T 22-04-2016 RM11_RS06750 ec70253a33419465715b7a620fd7c586 301 SMART SM00470 48 140 1.3E-31 T 22-04-2016 IPR003115 ParB/Sulfiredoxin RM11_RS06750 ec70253a33419465715b7a620fd7c586 301 Gene3D G3DSA:3.90.1530.10 47 146 1.1E-36 T 22-04-2016 RM11_RS06750 ec70253a33419465715b7a620fd7c586 301 SUPERFAMILY SSF110849 49 186 2.51E-32 T 22-04-2016 IPR003115 ParB/Sulfiredoxin RM11_RS06750 ec70253a33419465715b7a620fd7c586 301 PANTHER PTHR33375 6 299 1.9E-88 T 22-04-2016 RM11_RS06750 ec70253a33419465715b7a620fd7c586 301 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 48 220 5.7E-57 T 22-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RM11_RS06750 ec70253a33419465715b7a620fd7c586 301 Pfam PF02195 ParB-like nuclease domain 49 140 1.5E-26 T 22-04-2016 IPR003115 ParB/Sulfiredoxin RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Gene3D G3DSA:2.40.50.140 199 279 1.2E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Gene3D G3DSA:2.40.50.140 27 107 8.7E-13 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Gene3D G3DSA:2.40.50.140 108 178 3.5E-12 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Gene3D G3DSA:2.40.50.140 280 353 9.0E-26 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Gene3D G3DSA:2.40.50.140 455 530 2.5E-14 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SMART SM00316 281 353 1.1E-23 T 22-04-2016 IPR022967 RNA-binding domain, S1 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SMART SM00316 196 266 4.7E-28 T 22-04-2016 IPR022967 RNA-binding domain, S1 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SMART SM00316 457 529 1.9E-12 T 22-04-2016 IPR022967 RNA-binding domain, S1 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SMART SM00316 109 177 1.1E-6 T 22-04-2016 IPR022967 RNA-binding domain, S1 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SMART SM00316 25 93 9.2E-11 T 22-04-2016 IPR022967 RNA-binding domain, S1 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SMART SM00316 368 440 4.1E-19 T 22-04-2016 IPR022967 RNA-binding domain, S1 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Pfam PF00575 S1 RNA binding domain 107 177 8.6E-12 T 22-04-2016 IPR003029 S1 domain GO:0003676 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Pfam PF00575 S1 RNA binding domain 367 440 1.5E-16 T 22-04-2016 IPR003029 S1 domain GO:0003676 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Pfam PF00575 S1 RNA binding domain 196 266 1.2E-20 T 22-04-2016 IPR003029 S1 domain GO:0003676 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Pfam PF00575 S1 RNA binding domain 457 529 6.0E-11 T 22-04-2016 IPR003029 S1 domain GO:0003676 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Pfam PF00575 S1 RNA binding domain 24 92 2.9E-11 T 22-04-2016 IPR003029 S1 domain GO:0003676 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Pfam PF00575 S1 RNA binding domain 281 353 7.6E-18 T 22-04-2016 IPR003029 S1 domain GO:0003676 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SUPERFAMILY SSF50249 94 181 4.25E-12 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SUPERFAMILY SSF50249 195 283 1.5E-26 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 10 529 8.6E-189 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SUPERFAMILY SSF50249 451 543 6.72E-15 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PIRSF PIRSF002111 1 543 3.3E-188 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PANTHER PTHR10724 10 523 1.1E-219 T 22-04-2016 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SUPERFAMILY SSF50249 348 446 2.57E-21 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SUPERFAMILY SSF50249 261 371 1.0E-26 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 Gene3D G3DSA:2.40.50.140 354 443 1.8E-22 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PANTHER PTHR10724:SF6 10 523 1.1E-219 T 22-04-2016 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PRINTS PR00681 Ribosomal protein S1 signature 90 109 4.0E-84 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PRINTS PR00681 Ribosomal protein S1 signature 161 181 4.0E-84 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PRINTS PR00681 Ribosomal protein S1 signature 45 59 4.0E-84 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PRINTS PR00681 Ribosomal protein S1 signature 132 149 4.0E-84 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PRINTS PR00681 Ribosomal protein S1 signature 114 130 4.0E-84 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PRINTS PR00681 Ribosomal protein S1 signature 296 315 4.0E-84 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PRINTS PR00681 Ribosomal protein S1 signature 336 354 4.0E-84 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PRINTS PR00681 Ribosomal protein S1 signature 27 45 4.0E-84 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 PRINTS PR00681 Ribosomal protein S1 signature 218 239 4.0E-84 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS00435 8d085bfa665aaaeba799cbef0c7471b3 566 SUPERFAMILY SSF50249 18 118 1.93E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 109 9.0E-45 T 22-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 Gene3D G3DSA:3.40.50.20 1 129 2.7E-51 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 SUPERFAMILY SSF56059 83 351 5.05E-71 T 22-04-2016 RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 8.7E-218 T 22-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 Pfam PF02785 Biotin carboxylase C-terminal domain 335 440 7.0E-39 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 321 3.8E-78 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 SUPERFAMILY SSF51246 330 443 5.76E-44 T 22-04-2016 IPR011054 Rudiment single hybrid motif RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 SUPERFAMILY SSF52440 1 113 9.35E-49 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 Gene3D G3DSA:3.30.470.20 203 443 5.5E-95 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 SMART SM00878 335 440 5.9E-65 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal RM11_RS03290 f2edd06f3670eaf50b4e83d12eea42c7 452 Gene3D G3DSA:3.30.1490.20 130 202 2.2E-30 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS02480 99ad447cb65da7bf1f5b6e5c54f6d238 629 Gene3D G3DSA:3.10.50.40 264 376 3.2E-10 T 22-04-2016 RM11_RS02480 99ad447cb65da7bf1f5b6e5c54f6d238 629 Pfam PF13624 SurA N-terminal domain 1 163 6.7E-24 T 22-04-2016 RM11_RS02480 99ad447cb65da7bf1f5b6e5c54f6d238 629 Pfam PF13145 PPIC-type PPIASE domain 248 366 1.3E-20 T 22-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 RM11_RS02480 99ad447cb65da7bf1f5b6e5c54f6d238 629 PANTHER PTHR10657:SF13 242 521 8.8E-33 T 22-04-2016 RM11_RS02480 99ad447cb65da7bf1f5b6e5c54f6d238 629 PANTHER PTHR10657:SF13 1 178 8.8E-33 T 22-04-2016 RM11_RS02480 99ad447cb65da7bf1f5b6e5c54f6d238 629 SUPERFAMILY SSF109998 50 168 2.59E-13 T 22-04-2016 IPR027304 Trigger factor/SurA domain RM11_RS02480 99ad447cb65da7bf1f5b6e5c54f6d238 629 SUPERFAMILY SSF109998 242 297 2.59E-13 T 22-04-2016 IPR027304 Trigger factor/SurA domain RM11_RS02480 99ad447cb65da7bf1f5b6e5c54f6d238 629 SUPERFAMILY SSF54534 220 352 1.57E-7 T 22-04-2016 RM11_RS02480 99ad447cb65da7bf1f5b6e5c54f6d238 629 PANTHER PTHR10657 242 521 8.8E-33 T 22-04-2016 RM11_RS02480 99ad447cb65da7bf1f5b6e5c54f6d238 629 PANTHER PTHR10657 1 178 8.8E-33 T 22-04-2016 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PANTHER PTHR11670 754 893 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PANTHER PTHR11670 668 713 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PANTHER PTHR11670 417 652 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PANTHER PTHR11670 1 396 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PRINTS PR00415 Aconitase family signature 432 443 2.1E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PRINTS PR00415 Aconitase family signature 281 294 2.1E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PRINTS PR00415 Aconitase family signature 375 389 2.1E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PRINTS PR00415 Aconitase family signature 148 161 2.1E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PRINTS PR00415 Aconitase family signature 219 234 2.1E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PRINTS PR00415 Aconitase family signature 172 180 2.1E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PRINTS PR00415 Aconitase family signature 295 308 2.1E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PRINTS PR00415 Aconitase family signature 494 507 2.1E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PRINTS PR00415 Aconitase family signature 205 218 2.1E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 Gene3D G3DSA:3.40.1060.10 252 370 2.0E-36 T 22-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 Gene3D G3DSA:3.30.499.10 22 251 3.8E-81 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 ProSitePatterns PS01244 Aconitase family signature 2. 494 507 - T 22-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 Gene3D G3DSA:3.20.19.10 638 893 7.5E-79 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PANTHER PTHR11670:SF1 754 893 0.0 T 22-04-2016 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PANTHER PTHR11670:SF1 668 713 0.0 T 22-04-2016 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PANTHER PTHR11670:SF1 417 652 0.0 T 22-04-2016 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 PANTHER PTHR11670:SF1 1 396 0.0 T 22-04-2016 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 Gene3D G3DSA:3.30.499.10 372 576 2.7E-60 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 SUPERFAMILY SSF53732 4 628 7.98E-224 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 Pfam PF00694 Aconitase C-terminal domain 693 821 4.1E-40 T 22-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 SUPERFAMILY SSF52016 632 893 1.75E-84 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 Pfam PF00330 Aconitase family (aconitate hydratase) 78 563 4.5E-185 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 ProSitePatterns PS00450 Aconitase family signature 1. 428 444 - T 22-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RM11_RS00535 abb3ab0442a3fba30f0bd981e85daf8d 895 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 20 893 0.0 T 22-04-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 RM11_RS02115 3a76f0fadfc89d56c8b66505ecdb1020 264 Gene3D G3DSA:3.40.50.300 3 236 2.1E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02115 3a76f0fadfc89d56c8b66505ecdb1020 264 PANTHER PTHR24220:SF558 3 258 3.1E-66 T 22-04-2016 RM11_RS02115 3a76f0fadfc89d56c8b66505ecdb1020 264 PANTHER PTHR24220 3 258 3.1E-66 T 22-04-2016 RM11_RS02115 3a76f0fadfc89d56c8b66505ecdb1020 264 Pfam PF00005 ABC transporter 17 170 1.0E-21 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS02115 3a76f0fadfc89d56c8b66505ecdb1020 264 SUPERFAMILY SSF52540 2 234 6.15E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02115 3a76f0fadfc89d56c8b66505ecdb1020 264 SMART SM00382 26 219 2.2E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS02115 3a76f0fadfc89d56c8b66505ecdb1020 264 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 PIRSF PIRSF001529 1 425 7.4E-160 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 SUPERFAMILY SSF46589 1 114 2.04E-25 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 SUPERFAMILY SSF55681 118 418 1.13E-91 T 22-04-2016 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 Gene3D G3DSA:3.30.930.10 107 420 2.0E-131 T 22-04-2016 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 PANTHER PTHR11778:SF0 1 424 5.0E-185 T 22-04-2016 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 227 400 1.8E-32 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 PANTHER PTHR11778 1 424 5.0E-185 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 Gene3D G3DSA:1.10.287.40 1 106 1.5E-26 T 22-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 1.3E-28 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 1.3E-28 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 1.3E-28 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 1.3E-28 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 1.3E-28 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 109 1.4E-25 T 22-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 1.7E-148 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RM11_RS02450 5f7fabcf38338a2236a2086b642d350d 425 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 38.226 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RM11_RS06025 f2ee787bb3b59daa0d453764dadf2b4b 211 PANTHER PTHR41299 4 211 1.3E-21 T 22-04-2016 RM11_RS06025 f2ee787bb3b59daa0d453764dadf2b4b 211 SMART SM00983 134 203 1.4E-13 T 22-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 RM11_RS06025 f2ee787bb3b59daa0d453764dadf2b4b 211 SUPERFAMILY SSF63999 1 128 5.1E-23 T 22-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 RM11_RS06025 f2ee787bb3b59daa0d453764dadf2b4b 211 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 25 126 5.6E-12 T 22-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 RM11_RS06025 f2ee787bb3b59daa0d453764dadf2b4b 211 Gene3D G3DSA:3.40.50.10240 2 128 3.5E-18 T 22-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 RM11_RS06025 f2ee787bb3b59daa0d453764dadf2b4b 211 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 5 192 2.1E-38 T 22-04-2016 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 RM11_RS06025 f2ee787bb3b59daa0d453764dadf2b4b 211 PANTHER PTHR41299:SF1 4 211 1.3E-21 T 22-04-2016 RM11_RS06025 f2ee787bb3b59daa0d453764dadf2b4b 211 SUPERFAMILY SSF63862 151 203 9.29E-6 T 22-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 RM11_RS06025 f2ee787bb3b59daa0d453764dadf2b4b 211 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 152 189 4.8E-6 T 22-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 Gene3D G3DSA:2.40.50.140 1 123 1.9E-64 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 SUPERFAMILY SSF50249 2 123 5.83E-52 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.546 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 4.0E-67 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 Pfam PF00164 Ribosomal protein S12/S23 12 123 5.9E-42 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 1.3E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 1.3E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 1.3E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 1.3E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 1.3E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 1.3E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 PIRSF PIRSF002133 1 123 1.0E-53 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04150 db8b5d887061b876a67eb558c825a89e 123 PANTHER PTHR11652 1 116 5.2E-69 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04735 f83a34d03d6e7d4945452c643e16c7aa 318 SUPERFAMILY SSF51735 3 147 1.45E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04735 f83a34d03d6e7d4945452c643e16c7aa 318 SUPERFAMILY SSF55347 123 300 1.24E-24 T 22-04-2016 RM11_RS04735 f83a34d03d6e7d4945452c643e16c7aa 318 Gene3D G3DSA:3.30.360.10 135 312 1.2E-42 T 22-04-2016 RM11_RS04735 f83a34d03d6e7d4945452c643e16c7aa 318 Gene3D G3DSA:3.40.50.720 4 134 2.8E-40 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04735 f83a34d03d6e7d4945452c643e16c7aa 318 PANTHER PTHR22604 3 318 1.0E-78 T 22-04-2016 RM11_RS04735 f83a34d03d6e7d4945452c643e16c7aa 318 PANTHER PTHR22604:SF94 3 318 1.0E-78 T 22-04-2016 RM11_RS04735 f83a34d03d6e7d4945452c643e16c7aa 318 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 118 1.2E-22 T 22-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RM11_RS02995 bc75d34758220d1f4553f2fb95f87817 322 Pfam PF03462 PCRF domain 2 165 3.2E-48 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RM11_RS02995 bc75d34758220d1f4553f2fb95f87817 322 SMART SM00937 30 140 5.6E-51 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RM11_RS02995 bc75d34758220d1f4553f2fb95f87817 322 SUPERFAMILY SSF75620 2 309 8.37E-122 T 22-04-2016 RM11_RS02995 bc75d34758220d1f4553f2fb95f87817 322 PANTHER PTHR11075:SF6 1 318 5.7E-146 T 22-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RM11_RS02995 bc75d34758220d1f4553f2fb95f87817 322 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 190 206 - T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RM11_RS02995 bc75d34758220d1f4553f2fb95f87817 322 Gene3D G3DSA:3.30.160.20 173 251 3.4E-37 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RM11_RS02995 bc75d34758220d1f4553f2fb95f87817 322 PANTHER PTHR11075 1 318 5.7E-146 T 22-04-2016 RM11_RS02995 bc75d34758220d1f4553f2fb95f87817 322 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 308 5.9E-139 T 22-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RM11_RS02995 bc75d34758220d1f4553f2fb95f87817 322 Pfam PF00472 RF-1 domain 174 283 4.1E-40 T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RM11_RS02995 bc75d34758220d1f4553f2fb95f87817 322 Gene3D G3DSA:1.20.58.410 2 57 2.6E-7 T 22-04-2016 RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 SUPERFAMILY SSF51161 3 257 1.02E-70 T 22-04-2016 IPR011004 Trimeric LpxA-like RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 PANTHER PTHR23416 5 252 9.0E-101 T 22-04-2016 RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 6 258 3.3E-100 T 22-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 178 254 7.0E-16 T 22-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 Gene3D G3DSA:2.160.10.10 4 191 3.6E-45 T 22-04-2016 RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 3 261 41.779 T 22-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 Gene3D G3DSA:1.20.1180.10 195 254 1.9E-12 T 22-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 PANTHER PTHR23416:SF8 5 252 9.0E-101 T 22-04-2016 RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 PIRSF PIRSF000456 2 268 3.8E-97 T 22-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 107 141 4.5E-7 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS03470 07b939b4a08e9964aaf09439788a6ada 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 16 48 6.7E-8 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS01795 e44424520d2389eabd4af19939864e74 366 PANTHER PTHR21085 2 360 4.7E-183 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS01795 e44424520d2389eabd4af19939864e74 366 TIGRFAM TIGR00033 aroC: chorismate synthase 10 359 3.2E-123 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS01795 e44424520d2389eabd4af19939864e74 366 ProSitePatterns PS00788 Chorismate synthase signature 2. 130 146 - T 22-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS01795 e44424520d2389eabd4af19939864e74 366 Gene3D G3DSA:3.60.150.10 9 360 8.8E-144 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS01795 e44424520d2389eabd4af19939864e74 366 Hamap MF_00300 Chorismate synthase [aroC]. 10 362 35.454 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS01795 e44424520d2389eabd4af19939864e74 366 ProSitePatterns PS00789 Chorismate synthase signature 3. 329 345 - T 22-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS01795 e44424520d2389eabd4af19939864e74 366 SUPERFAMILY SSF103263 3 360 1.96E-135 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS01795 e44424520d2389eabd4af19939864e74 366 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 22-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS01795 e44424520d2389eabd4af19939864e74 366 Pfam PF01264 Chorismate synthase 10 355 6.9E-127 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS01795 e44424520d2389eabd4af19939864e74 366 PIRSF PIRSF001456 3 365 2.7E-127 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS05635 24d63c3dfcf01539c88683bbea62409e 273 PANTHER PTHR36303 2 270 1.5E-111 T 22-04-2016 RM11_RS05635 24d63c3dfcf01539c88683bbea62409e 273 Gene3D G3DSA:3.60.21.30 1 271 1.1E-104 T 22-04-2016 RM11_RS05635 24d63c3dfcf01539c88683bbea62409e 273 SUPERFAMILY SSF56300 1 260 5.22E-76 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like RM11_RS05635 24d63c3dfcf01539c88683bbea62409e 273 PIRSF PIRSF004789 1 266 1.9E-86 T 22-04-2016 IPR005235 Metallophosphoesterase, YmdB-like RM11_RS05635 24d63c3dfcf01539c88683bbea62409e 273 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 261 1.4E-80 T 22-04-2016 IPR005235 Metallophosphoesterase, YmdB-like RM11_RS05635 24d63c3dfcf01539c88683bbea62409e 273 Pfam PF13277 YmdB-like protein 4 258 1.7E-95 T 22-04-2016 IPR005235 Metallophosphoesterase, YmdB-like RM11_RS05635 24d63c3dfcf01539c88683bbea62409e 273 PANTHER PTHR36303:SF1 2 270 1.5E-111 T 22-04-2016 RM11_RS05675 fd22690c10580312f7ebc06efd4afb0b 103 SUPERFAMILY SSF47413 6 68 1.2E-5 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RM11_RS05675 fd22690c10580312f7ebc06efd4afb0b 103 Gene3D G3DSA:1.10.260.40 7 66 3.5E-7 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RM11_RS01805 b8269900ef023f0f6fa8999e9099153d 84 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 14 74 15.786 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RM11_RS01805 b8269900ef023f0f6fa8999e9099153d 84 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 14 68 6.5E-24 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RM11_RS01805 b8269900ef023f0f6fa8999e9099153d 84 SUPERFAMILY SSF116842 9 72 1.28E-20 T 22-04-2016 RM11_RS01805 b8269900ef023f0f6fa8999e9099153d 84 Gene3D G3DSA:1.10.287.1040 10 74 1.7E-25 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RM11_RS01805 b8269900ef023f0f6fa8999e9099153d 84 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 14 54 4.0E-17 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RM11_RS01805 b8269900ef023f0f6fa8999e9099153d 84 PANTHER PTHR34137 2 67 2.5E-20 T 22-04-2016 RM11_RS01805 b8269900ef023f0f6fa8999e9099153d 84 Pfam PF02609 Exonuclease VII small subunit 15 66 3.5E-20 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RM11_RS04710 7614539f894f0b2ddc4fe924ca11a978 233 PANTHER PTHR26402 1 230 2.3E-108 T 22-04-2016 RM11_RS04710 7614539f894f0b2ddc4fe924ca11a978 233 PANTHER PTHR26402:SF553 1 230 2.3E-108 T 22-04-2016 RM11_RS04710 7614539f894f0b2ddc4fe924ca11a978 233 SUPERFAMILY SSF52172 1 174 8.54E-37 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS04710 7614539f894f0b2ddc4fe924ca11a978 233 Pfam PF00072 Response regulator receiver domain 3 112 4.0E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS04710 7614539f894f0b2ddc4fe924ca11a978 233 Gene3D G3DSA:3.40.50.2300 1 122 2.9E-34 T 22-04-2016 RM11_RS04710 7614539f894f0b2ddc4fe924ca11a978 233 Gene3D G3DSA:1.10.10.10 123 224 2.8E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS04710 7614539f894f0b2ddc4fe924ca11a978 233 SMART SM00448 1 112 9.1E-35 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS04710 7614539f894f0b2ddc4fe924ca11a978 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 8.1E-21 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS04710 7614539f894f0b2ddc4fe924ca11a978 233 SMART SM00862 145 221 9.8E-20 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 SUPERFAMILY SSF52029 184 376 1.48E-86 T 22-04-2016 IPR027409 GroEL-like apical domain RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 Gene3D G3DSA:1.10.560.10 367 518 8.7E-41 T 22-04-2016 IPR027413 GroEL-like equatorial domain RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 PANTHER PTHR11353 2 547 4.9E-255 T 22-04-2016 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 Gene3D G3DSA:3.50.7.10 189 366 1.7E-103 T 22-04-2016 IPR027409 GroEL-like apical domain RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 22-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 Gene3D G3DSA:1.10.560.10 3 188 1.9E-45 T 22-04-2016 IPR027413 GroEL-like equatorial domain RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 SUPERFAMILY SSF54849 138 203 4.58E-23 T 22-04-2016 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 2.0E-96 T 22-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 545 42.382 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 1.6E-258 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 SUPERFAMILY SSF48592 406 521 4.28E-74 T 22-04-2016 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 SUPERFAMILY SSF48592 7 134 4.28E-74 T 22-04-2016 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 PRINTS PR00298 60kDa chaperonin signature 398 419 2.2E-74 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 PRINTS PR00298 60kDa chaperonin signature 27 53 2.2E-74 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 PRINTS PR00298 60kDa chaperonin signature 350 375 2.2E-74 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 PRINTS PR00298 60kDa chaperonin signature 83 110 2.2E-74 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RM11_RS05310 0c6467b921b23c62602b92700d459d6c 547 PRINTS PR00298 60kDa chaperonin signature 268 291 2.2E-74 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 262 375 3.2E-31 T 22-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 Gene3D G3DSA:3.40.47.10 2 264 3.0E-76 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 PIRSF PIRSF000447 1 420 2.1E-185 T 22-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 416 2.1E-182 T 22-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 SUPERFAMILY SSF53901 1 261 3.91E-75 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 254 1.1E-58 T 22-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 Gene3D G3DSA:3.40.47.10 271 418 9.2E-55 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 161 177 - T 22-04-2016 IPR018201 Beta-ketoacyl synthase, active site RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 SUPERFAMILY SSF53901 221 418 9.73E-67 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 PANTHER PTHR11712:SF273 1 419 7.4E-207 T 22-04-2016 RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 PANTHER PTHR11712 1 419 7.4E-207 T 22-04-2016 RM11_RS02330 fa5da7eb4e3ab57f3566e07038bb5fbc 420 SMART SM00825 Beta-ketoacyl synthase 4 420 1.2E-13 T 22-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 SUPERFAMILY SSF51905 14 274 1.86E-78 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 SUPERFAMILY SSF51905 373 455 1.86E-78 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 Gene3D G3DSA:3.90.700.10 258 363 4.9E-40 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 21 613 7.9E-285 T 22-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 PIRSF PIRSF000171 15 597 1.3E-35 T 22-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 Pfam PF00890 FAD binding domain 24 419 2.6E-124 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 Gene3D G3DSA:1.20.58.100 447 553 6.8E-39 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 Pfam PF02910 Fumarate reductase flavoprotein C-term 474 613 2.6E-43 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 58 67 - T 22-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 PANTHER PTHR11632 16 608 0.0 T 22-04-2016 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 PANTHER PTHR11632:SF51 16 608 0.0 T 22-04-2016 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 Gene3D G3DSA:4.10.80.40 554 613 7.0E-28 T 22-04-2016 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 Gene3D G3DSA:3.50.50.60 365 436 3.0E-123 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 Gene3D G3DSA:3.50.50.60 16 257 3.0E-123 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 24 612 9.3E-236 T 22-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 SUPERFAMILY SSF46977 465 613 7.59E-50 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 24 46 6.9E-5 T 22-04-2016 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 438 6.9E-5 T 22-04-2016 RM11_RS06340 59f3250a4809013889b0bbe3b02afacf 613 SUPERFAMILY SSF56425 251 369 3.59E-39 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 24 427 3.0E-98 T 22-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 SUPERFAMILY SSF51338 6 60 5.14E-25 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 SUPERFAMILY SSF51338 372 428 5.14E-25 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 SUPERFAMILY SSF51556 61 374 5.19E-86 T 22-04-2016 IPR032466 Metal-dependent hydrolase RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 Hamap MF_00220_B Dihydroorotase [pyrC]. 4 430 32.745 T 22-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 Gene3D G3DSA:2.30.40.10 383 428 5.0E-15 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 Gene3D G3DSA:2.30.40.10 4 61 5.0E-15 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 Gene3D G3DSA:3.20.20.140 62 382 1.1E-79 T 22-04-2016 RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 PANTHER PTHR11647 1 431 8.3E-129 T 22-04-2016 RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 PANTHER PTHR11647:SF70 1 431 8.3E-129 T 22-04-2016 RM11_RS03220 0b8e3619bd0e946865154cc38d13a2b5 431 Pfam PF01979 Amidohydrolase family 58 426 8.3E-16 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 Gene3D G3DSA:3.50.50.60 4 160 2.9E-39 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 SUPERFAMILY SSF51905 4 355 4.58E-64 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PANTHER PTHR22912:SF125 155 479 9.8E-190 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PANTHER PTHR22912:SF125 1 120 9.8E-190 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 Gene3D G3DSA:3.50.50.60 161 353 4.2E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 346 1.0E-66 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 22-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 367 475 7.4E-36 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 SUPERFAMILY SSF55424 363 484 3.61E-39 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 311 333 4.4E-34 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 196 214 4.4E-34 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 299 4.4E-34 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 4.4E-34 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 157 175 4.4E-34 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 5 484 1.5E-168 T 22-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 428 443 2.3E-60 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 450 470 2.3E-60 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 196 221 2.3E-60 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.3E-60 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 363 384 2.3E-60 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 2.3E-60 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 284 298 2.3E-60 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 326 333 2.3E-60 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PANTHER PTHR22912 155 479 9.8E-190 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PANTHER PTHR22912 1 120 9.8E-190 T 22-04-2016 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 Gene3D G3DSA:3.30.390.30 354 483 4.8E-47 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RM11_RS02535 02f61f4a53cd858e619573a76aaba93b 486 PIRSF PIRSF000350 1 484 2.8E-76 T 22-04-2016 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 Pfam PF00696 Amino acid kinase family 17 247 2.5E-40 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 PRINTS PR00474 Glutamate 5-kinase family signature 160 187 1.6E-47 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 PRINTS PR00474 Glutamate 5-kinase family signature 221 241 1.6E-47 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 PRINTS PR00474 Glutamate 5-kinase family signature 54 68 1.6E-47 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 PRINTS PR00474 Glutamate 5-kinase family signature 128 149 1.6E-47 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 PRINTS PR00474 Glutamate 5-kinase family signature 88 116 1.6E-47 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 ProSitePatterns PS00902 Glutamate 5-kinase signature. 219 236 - T 22-04-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 PANTHER PTHR11063:SF6 16 380 4.3E-101 T 22-04-2016 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 SMART SM00359 288 370 3.9E-20 T 22-04-2016 IPR002478 PUA domain GO:0003723 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 Gene3D G3DSA:3.40.1160.10 16 260 2.1E-50 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 SUPERFAMILY SSF88697 288 377 2.29E-23 T 22-04-2016 IPR015947 PUA-like domain RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 TIGRFAM TIGR01027 proB: glutamate 5-kinase 17 377 7.9E-118 T 22-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 Gene3D G3DSA:2.30.130.10 286 376 4.5E-26 T 22-04-2016 IPR015947 PUA-like domain RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 Pfam PF01472 PUA domain 289 361 1.3E-20 T 22-04-2016 IPR002478 PUA domain GO:0003723 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 Hamap MF_00456 Glutamate 5-kinase [proB]. 17 269 34.419 T 22-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 PANTHER PTHR11063 16 380 4.3E-101 T 22-04-2016 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 PIRSF PIRSF000729 12 379 2.1E-117 T 22-04-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RM11_RS00720 54f7b9a69f649934700c468eedbaaacb 384 SUPERFAMILY SSF53633 17 261 5.5E-61 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 Hamap MF_01382 Protein translocase subunit SecA [secA]. 7 827 19.987 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 SUPERFAMILY SSF52540 406 614 3.39E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 Pfam PF07517 SecA DEAD-like domain 9 391 5.9E-132 T 22-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 Gene3D G3DSA:3.40.50.300 406 614 1.6E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 SUPERFAMILY SSF81767 229 357 1.09E-44 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 Pfam PF02810 SEC-C motif 885 902 1.1E-8 T 22-04-2016 IPR004027 SEC-C motif RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 SUPERFAMILY SSF52540 9 230 5.16E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 SUPERFAMILY SSF52540 357 404 5.16E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 SMART SM00957 8 391 2.3E-291 T 22-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 Gene3D G3DSA:3.90.1440.10 233 357 1.7E-46 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 SUPERFAMILY SSF81886 881 893 1.83E-78 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 SUPERFAMILY SSF81886 616 835 1.83E-78 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 30 812 0.0 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 PRINTS PR00906 SecA protein signature 172 192 1.6E-70 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 PRINTS PR00906 SecA protein signature 402 415 1.6E-70 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 PRINTS PR00906 SecA protein signature 328 350 1.6E-70 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 PRINTS PR00906 SecA protein signature 119 129 1.6E-70 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 PRINTS PR00906 SecA protein signature 103 117 1.6E-70 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 PRINTS PR00906 SecA protein signature 365 382 1.6E-70 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 PRINTS PR00906 SecA protein signature 65 89 1.6E-70 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 Gene3D G3DSA:3.40.50.300 8 230 1.9E-124 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 Gene3D G3DSA:3.40.50.300 358 404 1.9E-124 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 Gene3D G3DSA:1.10.3060.10 644 826 3.0E-53 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 Pfam PF01043 SecA preprotein cross-linking domain 234 347 1.6E-38 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 Pfam PF07516 SecA Wing and Scaffold domain 613 824 4.2E-63 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 SMART SM00958 230 347 1.6E-73 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 PANTHER PTHR30612 546 905 0.0 T 22-04-2016 RM11_RS00920 ecec14b7dca8eeb7cab1c7534d5fe80f 905 PANTHER PTHR30612 1 510 0.0 T 22-04-2016 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 Hamap MF_00942 Endonuclease III [nth]. 9 227 36.664 T 22-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 ProSitePatterns PS01155 Endonuclease III family signature. 120 149 - T 22-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 Pfam PF00633 Helix-hairpin-helix motif 118 145 9.5E-9 T 22-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 Gene3D G3DSA:1.10.1670.10 141 224 1.8E-33 T 22-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 SMART SM00525 204 224 0.0014 T 22-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 SMART SM00478 56 203 4.8E-55 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 TIGRFAM TIGR01083 nth: endonuclease III 23 212 1.9E-76 T 22-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 PANTHER PTHR10359 22 228 7.3E-81 T 22-04-2016 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 Gene3D G3DSA:1.10.340.30 45 140 6.3E-34 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 52 186 6.3E-18 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 SUPERFAMILY SSF48150 21 231 1.88E-69 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RM11_RS00375 e1008ed2f1acb285d2837ef2334a137e 246 PANTHER PTHR10359:SF18 22 228 7.3E-81 T 22-04-2016 RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 Gene3D G3DSA:3.40.190.10 95 194 7.1E-22 T 22-04-2016 RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 PANTHER PTHR30537:SF5 1 299 8.6E-79 T 22-04-2016 RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 Pfam PF03466 LysR substrate binding domain 92 293 2.0E-30 T 22-04-2016 IPR005119 LysR, substrate-binding RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 PANTHER PTHR30537 1 299 8.6E-79 T 22-04-2016 RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 SUPERFAMILY SSF46785 4 115 7.08E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 Gene3D G3DSA:1.10.10.10 5 86 9.1E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.2E-22 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 4.0E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 4.0E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 4.0E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RM11_RS04610 0c573b2c1d46b4d8aed2401f40d3e493 301 SUPERFAMILY SSF53850 92 299 1.72E-34 T 22-04-2016 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 285 1.1E-112 T 22-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 PIRSF PIRSF000770 17 293 7.4E-33 T 22-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 Pfam PF00140 Sigma-70 factor, region 1.2 18 46 1.2E-4 T 22-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 Gene3D G3DSA:1.10.601.10 16 118 1.5E-33 T 22-04-2016 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 PANTHER PTHR30376 2 284 6.9E-99 T 22-04-2016 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 SUPERFAMILY SSF88946 11 121 1.08E-36 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 254 280 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 Pfam PF04545 Sigma-70, region 4 231 281 1.8E-15 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 Gene3D G3DSA:1.10.10.10 226 289 2.3E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 SUPERFAMILY SSF88659 192 286 2.8E-19 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 Pfam PF04542 Sigma-70 region 2 53 121 3.6E-15 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 PRINTS PR00046 Major sigma-70 factor signature 101 109 3.8E-21 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 PRINTS PR00046 Major sigma-70 factor signature 235 247 3.8E-21 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 PRINTS PR00046 Major sigma-70 factor signature 254 269 3.8E-21 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 PRINTS PR00046 Major sigma-70 factor signature 269 280 3.8E-21 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.8E-21 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 1 286 50.66 T 22-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 282 7.0E-29 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS01395 3239b34d0039aa59cab0a97b74a0bf35 294 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS03155 27f0c69c20f4045f74bd84545c615788 257 PANTHER PTHR10992 7 253 2.8E-31 T 22-04-2016 RM11_RS03155 27f0c69c20f4045f74bd84545c615788 257 SUPERFAMILY SSF53474 6 238 8.92E-44 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS03155 27f0c69c20f4045f74bd84545c615788 257 Pfam PF00561 alpha/beta hydrolase fold 26 128 2.5E-20 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RM11_RS03155 27f0c69c20f4045f74bd84545c615788 257 Gene3D G3DSA:3.40.50.1820 7 237 3.4E-41 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS02140 cd93ded47ce3322be3acb185ed8d4e28 260 Gene3D G3DSA:3.30.1150.10 155 249 1.7E-16 T 22-04-2016 RM11_RS02140 cd93ded47ce3322be3acb185ed8d4e28 260 SUPERFAMILY SSF74653 158 259 6.54E-18 T 22-04-2016 RM11_RS02140 cd93ded47ce3322be3acb185ed8d4e28 260 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 193 251 8.9E-13 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 RM11_RS02140 cd93ded47ce3322be3acb185ed8d4e28 260 Pfam PF13103 TonB C terminal 173 248 4.2E-9 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 514 2.6E-148 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PIRSF PIRSF002869 1 521 8.9E-145 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PANTHER PTHR11206 221 446 1.2E-47 T 22-04-2016 RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PANTHER PTHR11206 78 87 1.2E-47 T 22-04-2016 RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PANTHER PTHR11206 119 124 1.2E-47 T 22-04-2016 RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PRINTS PR01806 Virulence factor MviN signature 412 429 2.3E-69 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PRINTS PR01806 Virulence factor MviN signature 52 68 2.3E-69 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PRINTS PR01806 Virulence factor MviN signature 360 379 2.3E-69 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PRINTS PR01806 Virulence factor MviN signature 262 288 2.3E-69 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PRINTS PR01806 Virulence factor MviN signature 158 179 2.3E-69 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PRINTS PR01806 Virulence factor MviN signature 134 158 2.3E-69 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PRINTS PR01806 Virulence factor MviN signature 33 52 2.3E-69 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 Pfam PF03023 MviN-like protein 28 468 2.3E-114 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PANTHER PTHR11206:SF90 221 446 1.2E-47 T 22-04-2016 RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PANTHER PTHR11206:SF90 78 87 1.2E-47 T 22-04-2016 RM11_RS05290 8106257eabaa5ab663d7779841e6dffa 523 PANTHER PTHR11206:SF90 119 124 1.2E-47 T 22-04-2016 RM11_RS01640 5cb8059fb7c8dea25faa4a0e176b5499 146 SUPERFAMILY SSF50346 57 118 7.06E-12 T 22-04-2016 IPR011033 PRC-barrel-like RM11_RS01640 5cb8059fb7c8dea25faa4a0e176b5499 146 Gene3D G3DSA:2.30.30.240 58 117 5.2E-11 T 22-04-2016 RM11_RS01640 5cb8059fb7c8dea25faa4a0e176b5499 146 Pfam PF05239 PRC-barrel domain 56 131 5.9E-14 T 22-04-2016 IPR027275 PRC-barrel domain RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 35.89 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 9.08E-38 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 9.08E-38 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 9.08E-38 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 9.08E-38 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 9.08E-38 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 PANTHER PTHR22855:SF17 1 289 1.6E-132 T 22-04-2016 RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 Gene3D G3DSA:3.90.226.10 19 280 3.9E-61 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 PANTHER PTHR22855 1 289 1.6E-132 T 22-04-2016 RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 283 2.4E-106 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 SUPERFAMILY SSF52096 25 281 8.63E-78 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS00170 9bd0ec6833fbf3104a4b704e17ff4a95 306 Pfam PF01039 Carboxyl transferase domain 104 240 2.2E-19 T 22-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS02165 7551c13d695a040e9bb999160abcb6dc 132 Gene3D G3DSA:3.90.940.10 1 66 1.1E-12 T 22-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS02165 7551c13d695a040e9bb999160abcb6dc 132 Pfam PF01192 RNA polymerase Rpb6 8 58 4.9E-16 T 22-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS02165 7551c13d695a040e9bb999160abcb6dc 132 SUPERFAMILY SSF63562 1 81 8.76E-22 T 22-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS02165 7551c13d695a040e9bb999160abcb6dc 132 SMART SM01409 8 60 5.2E-16 T 22-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS02165 7551c13d695a040e9bb999160abcb6dc 132 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 58 3.8E-18 T 22-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS02165 7551c13d695a040e9bb999160abcb6dc 132 PANTHER PTHR34476 2 90 1.5E-24 T 22-04-2016 RM11_RS02165 7551c13d695a040e9bb999160abcb6dc 132 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 16.306 T 22-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS00250 ce25e38ce4593582b0b39080e96a6c58 215 SUPERFAMILY SSF52972 5 212 3.4E-60 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RM11_RS00250 ce25e38ce4593582b0b39080e96a6c58 215 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 8 211 3.2E-45 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RM11_RS00250 ce25e38ce4593582b0b39080e96a6c58 215 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 7 213 45.442 T 22-04-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RM11_RS00250 ce25e38ce4593582b0b39080e96a6c58 215 PANTHER PTHR11067 2 215 2.4E-60 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RM11_RS00250 ce25e38ce4593582b0b39080e96a6c58 215 Pfam PF01725 Ham1 family 9 209 1.5E-46 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RM11_RS00250 ce25e38ce4593582b0b39080e96a6c58 215 PANTHER PTHR11067:SF9 2 215 2.4E-60 T 22-04-2016 RM11_RS00250 ce25e38ce4593582b0b39080e96a6c58 215 Gene3D G3DSA:3.90.950.10 2 212 2.4E-69 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RM11_RS00540 201b21ef320b478ed073d90bab009ac9 88 Pfam PF01649 Ribosomal protein S20 2 84 5.3E-26 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00540 201b21ef320b478ed073d90bab009ac9 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 17 86 2.0E-25 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00540 201b21ef320b478ed073d90bab009ac9 88 PANTHER PTHR33398 1 86 2.0E-27 T 22-04-2016 RM11_RS00540 201b21ef320b478ed073d90bab009ac9 88 SUPERFAMILY SSF46992 3 86 1.7E-27 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00540 201b21ef320b478ed073d90bab009ac9 88 Gene3D G3DSA:1.20.58.110 1 86 2.2E-29 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00540 201b21ef320b478ed073d90bab009ac9 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 15.964 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00540 201b21ef320b478ed073d90bab009ac9 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 6.7E-20 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 Gene3D G3DSA:3.30.1490.20 97 174 2.8E-9 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 PANTHER PTHR23132 6 302 2.9E-75 T 22-04-2016 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 244 273 - T 22-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 Pfam PF07478 D-ala D-ala ligase C-terminus 130 300 5.7E-41 T 22-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 303 32.988 T 22-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 302 3.4E-84 T 22-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 SUPERFAMILY SSF56059 97 302 6.57E-47 T 22-04-2016 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 Gene3D G3DSA:3.40.50.20 4 85 6.2E-28 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 SUPERFAMILY SSF52440 5 97 7.77E-31 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 PIRSF PIRSF039102 45 305 8.5E-70 T 22-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 Gene3D G3DSA:3.30.470.20 87 96 2.6E-46 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 Gene3D G3DSA:3.30.470.20 175 302 2.6E-46 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 64 75 - T 22-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04410 2def3f5807df4c3b62e4898654978d99 306 Pfam PF01820 D-ala D-ala ligase N-terminus 6 85 2.2E-20 T 22-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS02475 2737fbb1410ee66d1f0cad11992a7f87 286 PANTHER PTHR21181:SF18 10 249 7.6E-29 T 22-04-2016 RM11_RS02475 2737fbb1410ee66d1f0cad11992a7f87 286 PANTHER PTHR21181 10 249 7.6E-29 T 22-04-2016 RM11_RS02475 2737fbb1410ee66d1f0cad11992a7f87 286 Gene3D G3DSA:1.10.600.10 11 284 3.4E-14 T 22-04-2016 IPR008949 Isoprenoid synthase domain RM11_RS02475 2737fbb1410ee66d1f0cad11992a7f87 286 SUPERFAMILY SSF48576 5 279 1.58E-51 T 22-04-2016 IPR008949 Isoprenoid synthase domain RM11_RS02475 2737fbb1410ee66d1f0cad11992a7f87 286 Pfam PF00494 Squalene/phytoene synthase 12 265 2.3E-38 T 22-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 RM11_RS03455 cf53cf5b5f9abb52cf8f3fac48dd77ff 257 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS03455 cf53cf5b5f9abb52cf8f3fac48dd77ff 257 PIRSF PIRSF039085 13 257 1.2E-104 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RM11_RS03455 cf53cf5b5f9abb52cf8f3fac48dd77ff 257 PANTHER PTHR24220:SF474 18 255 9.9E-144 T 22-04-2016 RM11_RS03455 cf53cf5b5f9abb52cf8f3fac48dd77ff 257 Pfam PF00005 ABC transporter 33 181 8.6E-35 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS03455 cf53cf5b5f9abb52cf8f3fac48dd77ff 257 SMART SM00382 41 229 5.4E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS03455 cf53cf5b5f9abb52cf8f3fac48dd77ff 257 PANTHER PTHR24220 18 255 9.9E-144 T 22-04-2016 RM11_RS03455 cf53cf5b5f9abb52cf8f3fac48dd77ff 257 SUPERFAMILY SSF52540 16 250 7.74E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03455 cf53cf5b5f9abb52cf8f3fac48dd77ff 257 Gene3D G3DSA:3.40.50.300 15 252 2.9E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00220 e62bdb29ee778b5e5bfe2ac75bb08a13 588 ProSitePatterns PS00211 ABC transporters family signature. 483 497 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS00220 e62bdb29ee778b5e5bfe2ac75bb08a13 588 Gene3D G3DSA:3.40.50.300 346 575 6.3E-85 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00220 e62bdb29ee778b5e5bfe2ac75bb08a13 588 Pfam PF00005 ABC transporter 362 511 3.2E-38 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS00220 e62bdb29ee778b5e5bfe2ac75bb08a13 588 SMART SM00382 371 557 2.2E-19 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS00220 e62bdb29ee778b5e5bfe2ac75bb08a13 588 SUPERFAMILY SSF90123 18 332 3.01E-55 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RM11_RS00220 e62bdb29ee778b5e5bfe2ac75bb08a13 588 SUPERFAMILY SSF52540 338 582 1.41E-91 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00220 e62bdb29ee778b5e5bfe2ac75bb08a13 588 PANTHER PTHR24221 14 584 5.1E-196 T 22-04-2016 RM11_RS00220 e62bdb29ee778b5e5bfe2ac75bb08a13 588 Gene3D G3DSA:1.20.1560.10 18 327 8.6E-54 T 22-04-2016 RM11_RS00220 e62bdb29ee778b5e5bfe2ac75bb08a13 588 Pfam PF00664 ABC transporter transmembrane region 32 291 3.3E-34 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RM11_RS01035 9bcc1812c08b441a2fad09ccf4873fc2 544 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 90 490 5.9E-91 T 22-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RM11_RS01035 9bcc1812c08b441a2fad09ccf4873fc2 544 SUPERFAMILY SSF56317 250 514 1.1E-36 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RM11_RS01035 9bcc1812c08b441a2fad09ccf4873fc2 544 PANTHER PTHR38686 26 543 8.3E-58 T 22-04-2016 RM11_RS01035 9bcc1812c08b441a2fad09ccf4873fc2 544 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 29 530 19.723 T 22-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RM11_RS01035 9bcc1812c08b441a2fad09ccf4873fc2 544 Gene3D G3DSA:3.60.110.10 289 502 6.3E-23 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RM11_RS01035 9bcc1812c08b441a2fad09ccf4873fc2 544 Pfam PF00795 Carbon-nitrogen hydrolase 262 507 2.9E-27 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 PRINTS PR00987 Glutamyl-tRNA synthetase signature 5 17 2.1E-21 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 PRINTS PR00987 Glutamyl-tRNA synthetase signature 34 47 2.1E-21 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 PRINTS PR00987 Glutamyl-tRNA synthetase signature 207 215 2.1E-21 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 PRINTS PR00987 Glutamyl-tRNA synthetase signature 191 201 2.1E-21 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 PRINTS PR00987 Glutamyl-tRNA synthetase signature 19 30 2.1E-21 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 2 458 25.681 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 SUPERFAMILY SSF52374 2 308 8.04E-90 T 22-04-2016 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 455 4.6E-106 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 8 19 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 SUPERFAMILY SSF48163 294 454 8.63E-30 T 22-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 315 1.6E-73 T 22-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 PANTHER PTHR11451 2 307 1.8E-62 T 22-04-2016 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 Gene3D G3DSA:3.90.800.10 67 190 1.4E-29 T 22-04-2016 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 PANTHER PTHR11451:SF41 2 307 1.8E-62 T 22-04-2016 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 Gene3D G3DSA:1.10.10.350 378 454 9.6E-13 T 22-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 Gene3D G3DSA:3.40.50.620 2 66 4.4E-45 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 Gene3D G3DSA:3.40.50.620 193 242 4.4E-45 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS03395 31b5070c288f54769c42519c6c134b94 459 Gene3D G3DSA:1.10.1160.10 248 325 8.5E-10 T 22-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RM11_RS00500 e550f2ef4b510ad51905167f5ae919f2 403 SUPERFAMILY SSF53383 13 389 9.82E-122 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RM11_RS00500 e550f2ef4b510ad51905167f5ae919f2 403 Pfam PF00202 Aminotransferase class-III 18 389 3.0E-113 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RM11_RS00500 e550f2ef4b510ad51905167f5ae919f2 403 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 6 390 42.784 T 22-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RM11_RS00500 e550f2ef4b510ad51905167f5ae919f2 403 Gene3D G3DSA:3.40.640.10 52 282 6.3E-84 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RM11_RS00500 e550f2ef4b510ad51905167f5ae919f2 403 Gene3D G3DSA:3.90.1150.10 283 390 3.9E-30 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RM11_RS00500 e550f2ef4b510ad51905167f5ae919f2 403 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 12 389 1.6E-134 T 22-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RM11_RS00500 e550f2ef4b510ad51905167f5ae919f2 403 PANTHER PTHR11986:SF79 13 397 6.5E-164 T 22-04-2016 RM11_RS00500 e550f2ef4b510ad51905167f5ae919f2 403 PANTHER PTHR11986 13 397 6.5E-164 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RM11_RS00500 e550f2ef4b510ad51905167f5ae919f2 403 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 215 252 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RM11_RS02740 2eaf318102f7248dd3f450fb32c9131f 311 Gene3D G3DSA:3.40.50.720 40 125 4.0E-17 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02740 2eaf318102f7248dd3f450fb32c9131f 311 Gene3D G3DSA:3.30.360.10 126 291 1.1E-31 T 22-04-2016 RM11_RS02740 2eaf318102f7248dd3f450fb32c9131f 311 PANTHER PTHR32338:SF9 4 308 2.3E-97 T 22-04-2016 RM11_RS02740 2eaf318102f7248dd3f450fb32c9131f 311 SMART SM00859 4 106 1.8E-11 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RM11_RS02740 2eaf318102f7248dd3f450fb32c9131f 311 SUPERFAMILY SSF51735 1 137 7.88E-29 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02740 2eaf318102f7248dd3f450fb32c9131f 311 SUPERFAMILY SSF55347 117 291 3.92E-32 T 22-04-2016 RM11_RS02740 2eaf318102f7248dd3f450fb32c9131f 311 Hamap MF_01110 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 1 310 50.698 T 22-04-2016 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RM11_RS02740 2eaf318102f7248dd3f450fb32c9131f 311 TIGRFAM TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase 3 308 6.5E-113 T 22-04-2016 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RM11_RS02740 2eaf318102f7248dd3f450fb32c9131f 311 PANTHER PTHR32338 4 308 2.3E-97 T 22-04-2016 RM11_RS02740 2eaf318102f7248dd3f450fb32c9131f 311 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 44 102 1.4E-8 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Pfam PF03725 3' exoribonuclease family, domain 2 462 531 8.6E-8 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Pfam PF03725 3' exoribonuclease family, domain 2 147 211 4.0E-11 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 SUPERFAMILY SSF55666 452 551 2.52E-29 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 SUPERFAMILY SSF54211 292 490 8.1E-49 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 SUPERFAMILY SSF55666 145 235 8.27E-29 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 322 5.9E-23 T 22-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 SUPERFAMILY SSF50249 622 701 1.49E-18 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Gene3D G3DSA:3.30.230.70 4 224 3.7E-84 T 22-04-2016 IPR027408 PNPase/RNase PH domain RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Gene3D G3DSA:3.30.230.70 315 544 1.2E-87 T 22-04-2016 IPR027408 PNPase/RNase PH domain RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Gene3D G3DSA:3.30.1370.10 555 620 6.2E-23 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Gene3D G3DSA:1.10.10.400 240 314 1.5E-23 T 22-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 PANTHER PTHR11252:SF0 1 733 0.0 T 22-04-2016 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Gene3D G3DSA:2.40.50.140 621 696 8.6E-22 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 SMART SM00322 554 619 1.7E-9 T 22-04-2016 IPR004087 K Homology domain GO:0003676 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Pfam PF00575 S1 RNA binding domain 620 692 1.6E-13 T 22-04-2016 IPR003029 S1 domain GO:0003676 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Pfam PF01138 3' exoribonuclease family, domain 1 13 144 1.4E-22 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Pfam PF01138 3' exoribonuclease family, domain 1 326 458 1.2E-21 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 SMART SM00316 622 692 2.9E-18 T 22-04-2016 IPR022967 RNA-binding domain, S1 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 SUPERFAMILY SSF54211 2 144 1.21E-49 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 692 0.0 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 PANTHER PTHR11252 1 733 0.0 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 SUPERFAMILY SSF54791 557 642 1.59E-21 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 PIRSF PIRSF005499 1 726 8.1E-298 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 695 30.521 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RM11_RS00975 de071e1ab725a6a4bf09f6dec9a8bb65 733 Pfam PF00013 KH domain 559 615 9.5E-9 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RM11_RS04670 d845b8ebeeb9f150d9eaaed224c879cd 934 Pfam PF13709 Domain of unknown function (DUF4159) 693 910 4.8E-44 T 22-04-2016 IPR025297 Domain of unknown function DUF4159 RM11_RS04670 d845b8ebeeb9f150d9eaaed224c879cd 934 SUPERFAMILY SSF52317 361 517 1.83E-6 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS04670 d845b8ebeeb9f150d9eaaed224c879cd 934 Pfam PF07584 Aerotolerance regulator N-terminal 2 75 4.3E-17 T 22-04-2016 IPR024163 Aerotolerance regulator, N-terminal RM11_RS04670 d845b8ebeeb9f150d9eaaed224c879cd 934 TIGRFAM TIGR02226 two_anch: N-terminal double-transmembrane domain 1 80 6.8E-21 T 22-04-2016 IPR011933 Double transmembrane domain RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 PANTHER PTHR11880 3 92 6.1E-45 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 22-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 Pfam PF00203 Ribosomal protein S19 3 83 7.4E-35 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 91 6.3E-40 T 22-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 PIRSF PIRSF002144 1 92 1.6E-31 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 Gene3D G3DSA:3.30.860.10 3 91 1.2E-39 T 22-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.7E-21 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.7E-21 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.7E-21 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 SUPERFAMILY SSF54570 3 84 1.31E-33 T 22-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RM11_RS04105 ed712fd4d5d19cebcfc01a8fbbe7a38a 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 23.93 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RM11_RS00745 fbb6ce0b7d3a3325227c0c518ea514cb 426 PANTHER PTHR21666:SF204 72 417 8.0E-36 T 22-04-2016 RM11_RS00745 fbb6ce0b7d3a3325227c0c518ea514cb 426 Gene3D G3DSA:2.70.70.10 271 415 3.1E-23 T 22-04-2016 RM11_RS00745 fbb6ce0b7d3a3325227c0c518ea514cb 426 Pfam PF01551 Peptidase family M23 310 410 5.8E-18 T 22-04-2016 IPR016047 Peptidase M23 RM11_RS00745 fbb6ce0b7d3a3325227c0c518ea514cb 426 SUPERFAMILY SSF51261 223 413 8.5E-20 T 22-04-2016 IPR011055 Duplicated hybrid motif RM11_RS00745 fbb6ce0b7d3a3325227c0c518ea514cb 426 PANTHER PTHR21666 72 417 8.0E-36 T 22-04-2016 RM11_RS04755 5b10523dd869f1cb78a24ed94dcf78b3 309 PANTHER PTHR30465:SF10 26 307 3.0E-110 T 22-04-2016 RM11_RS04755 5b10523dd869f1cb78a24ed94dcf78b3 309 SUPERFAMILY SSF161098 103 289 1.7E-27 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04755 5b10523dd869f1cb78a24ed94dcf78b3 309 Gene3D G3DSA:1.10.3720.10 101 306 1.9E-25 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04755 5b10523dd869f1cb78a24ed94dcf78b3 309 PANTHER PTHR30465 26 307 3.0E-110 T 22-04-2016 RM11_RS04755 5b10523dd869f1cb78a24ed94dcf78b3 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 307 5.3E-29 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04755 5b10523dd869f1cb78a24ed94dcf78b3 309 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 41 85 6.2E-11 T 22-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RM11_RS04400 73def504012690d15cb5026074d939dd 433 SUPERFAMILY SSF53067 215 396 1.62E-39 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 Pfam PF02491 SHS2 domain inserted in FTSA 104 179 1.4E-18 T 22-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RM11_RS04400 73def504012690d15cb5026074d939dd 433 Hamap MF_02033 Cell division protein FtsA [ftsA]. 13 433 25.376 T 22-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RM11_RS04400 73def504012690d15cb5026074d939dd 433 Gene3D G3DSA:3.90.640.10 252 315 2.2E-19 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 18 396 1.2E-101 T 22-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RM11_RS04400 73def504012690d15cb5026074d939dd 433 SMART SM00842 17 213 8.7E-81 T 22-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RM11_RS04400 73def504012690d15cb5026074d939dd 433 SUPERFAMILY SSF53067 15 214 1.04E-47 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 Gene3D G3DSA:3.30.420.40 175 226 7.9E-13 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 Gene3D G3DSA:3.30.420.40 16 100 7.9E-13 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 Gene3D G3DSA:3.30.1490.110 117 174 3.9E-16 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 PANTHER PTHR32432:SF4 5 396 2.4E-102 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 Gene3D G3DSA:3.30.420.40 227 251 8.0E-21 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 Gene3D G3DSA:3.30.420.40 316 370 8.0E-21 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 PANTHER PTHR32432 5 396 2.4E-102 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 PIRSF PIRSF003101 9 433 3.0E-119 T 22-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RM11_RS04400 73def504012690d15cb5026074d939dd 433 Pfam PF14450 Cell division protein FtsA 224 392 9.5E-18 T 22-04-2016 RM11_RS04400 73def504012690d15cb5026074d939dd 433 Pfam PF14450 Cell division protein FtsA 19 211 2.9E-10 T 22-04-2016 RM11_RS02185 d1f755c1374a0044b8a7f3592acb8586 133 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 91 4.0E-44 T 22-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RM11_RS02185 d1f755c1374a0044b8a7f3592acb8586 133 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 107 7.4E-16 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RM11_RS02185 d1f755c1374a0044b8a7f3592acb8586 133 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 128 7.1E-21 T 22-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RM11_RS02185 d1f755c1374a0044b8a7f3592acb8586 133 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 129 23.226 T 22-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RM11_RS02185 d1f755c1374a0044b8a7f3592acb8586 133 Gene3D G3DSA:3.90.470.20 1 128 4.5E-35 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RM11_RS02185 d1f755c1374a0044b8a7f3592acb8586 133 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 129 1.3E-27 T 22-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RM11_RS02185 d1f755c1374a0044b8a7f3592acb8586 133 SUPERFAMILY SSF56214 1 128 1.11E-26 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RM11_RS06505 7b2ae0b1d04cda0cbc9d7b187bf5cc87 254 Gene3D G3DSA:3.40.50.150 95 222 2.1E-15 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS06505 7b2ae0b1d04cda0cbc9d7b187bf5cc87 254 Pfam PF08241 Methyltransferase domain 95 138 4.4E-9 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RM11_RS06505 7b2ae0b1d04cda0cbc9d7b187bf5cc87 254 SUPERFAMILY SSF53335 27 222 2.79E-19 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 ProSitePatterns PS00681 Chaperonins cpn10 signature. 6 30 - T 22-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 PANTHER PTHR10772 6 97 2.1E-47 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 SUPERFAMILY SSF50129 5 97 1.13E-35 T 22-04-2016 IPR011032 GroES-like RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 SMART SM00883 5 97 1.1E-61 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 Pfam PF00166 Chaperonin 10 Kd subunit 6 96 1.7E-36 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 Gene3D G3DSA:2.30.33.40 6 97 4.7E-39 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 Hamap MF_00580 10 kDa chaperonin [groS]. 5 98 27.539 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 PRINTS PR00297 10kDa chaperonin signature 28 49 4.3E-34 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 PRINTS PR00297 10kDa chaperonin signature 84 97 4.3E-34 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 PRINTS PR00297 10kDa chaperonin signature 6 21 4.3E-34 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RM11_RS05315 c1e23d5e79d46961da08cac75bede8cd 98 PRINTS PR00297 10kDa chaperonin signature 63 75 4.3E-34 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Gene3D G3DSA:3.40.50.10190 639 716 8.8E-25 T 22-04-2016 IPR001357 BRCT domain RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 13 328 3.3E-118 T 22-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 127 156 - T 22-04-2016 IPR018239 NAD-dependent DNA ligase, active site RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 21 710 3.2E-226 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 SMART SM00532 13 469 9.4E-237 T 22-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 341 356 - T 22-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 SUPERFAMILY SSF47781 424 625 2.47E-46 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 640 714 1.4E-11 T 22-04-2016 IPR001357 BRCT domain RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 429 455 4.7E-10 T 22-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Gene3D G3DSA:2.40.50.140 330 411 6.5E-31 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Gene3D G3DSA:1.10.287.610 6 77 5.8E-21 T 22-04-2016 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 SUPERFAMILY SSF52113 640 715 3.92E-18 T 22-04-2016 IPR001357 BRCT domain RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Hamap MF_01588 DNA ligase [ligA]. 12 714 48.727 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 PIRSF PIRSF001604 6 718 2.7E-221 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Pfam PF12826 Helix-hairpin-helix motif 541 621 3.2E-10 T 22-04-2016 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Gene3D G3DSA:1.10.150.20 456 532 1.1E-19 T 22-04-2016 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 SMART SM00292 640 717 1.9E-12 T 22-04-2016 IPR001357 BRCT domain RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 SUPERFAMILY SSF56091 10 326 6.56E-114 T 22-04-2016 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 SUPERFAMILY SSF50249 328 420 4.97E-22 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 333 418 5.9E-31 T 22-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Gene3D G3DSA:3.30.470.30 131 261 4.5E-50 T 22-04-2016 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 Gene3D G3DSA:1.10.150.20 535 626 9.2E-23 T 22-04-2016 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 SMART SM00278 592 611 2.3 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 SMART SM00278 543 562 1700.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RM11_RS04375 39e3e727209fa0f45d9cd703f0b9c5c0 719 SMART SM00278 511 530 220.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 Gene3D G3DSA:3.40.50.720 10 204 1.0E-65 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 255 1.1E-85 T 22-04-2016 RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 7.7E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 7.7E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 7.7E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 7.7E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 7.7E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 PIRSF PIRSF000094 5 263 4.5E-112 T 22-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 PANTHER PTHR24322:SF317 17 146 2.0E-51 T 22-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 PANTHER PTHR24322:SF317 162 194 2.0E-51 T 22-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 SUPERFAMILY SSF51735 10 257 4.96E-65 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 PANTHER PTHR24322 17 146 2.0E-51 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS01790 24f1ad09de0c4e11709b2c2a8a09c160 272 PANTHER PTHR24322 162 194 2.0E-51 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS03245 16a60ebdb3ee1973d342dc29a6dd22e5 55 PANTHER PTHR15238:SF1 1 55 4.8E-20 T 22-04-2016 RM11_RS03245 16a60ebdb3ee1973d342dc29a6dd22e5 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 53 12.171 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03245 16a60ebdb3ee1973d342dc29a6dd22e5 55 PANTHER PTHR15238 1 55 4.8E-20 T 22-04-2016 RM11_RS03245 16a60ebdb3ee1973d342dc29a6dd22e5 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 22-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03245 16a60ebdb3ee1973d342dc29a6dd22e5 55 Pfam PF00471 Ribosomal protein L33 7 53 2.8E-13 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03245 16a60ebdb3ee1973d342dc29a6dd22e5 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 1.1E-18 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03245 16a60ebdb3ee1973d342dc29a6dd22e5 55 SUPERFAMILY SSF57829 1 53 4.82E-17 T 22-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RM11_RS00600 73855690cdc560781359e00dcee0c02e 169 SUPERFAMILY SSF54637 3 168 5.59E-53 T 22-04-2016 IPR029069 HotDog domain RM11_RS00600 73855690cdc560781359e00dcee0c02e 169 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 168 2.2E-87 T 22-04-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RM11_RS00600 73855690cdc560781359e00dcee0c02e 169 Gene3D G3DSA:3.10.129.10 2 168 3.4E-53 T 22-04-2016 IPR029069 HotDog domain RM11_RS00600 73855690cdc560781359e00dcee0c02e 169 Pfam PF07977 FabA-like domain 29 158 2.5E-47 T 22-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RM11_RS04075 8912df83fe65afc2eaed6f440b9a9e1b 122 Gene3D G3DSA:2.40.150.20 1 122 9.0E-56 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RM11_RS04075 8912df83fe65afc2eaed6f440b9a9e1b 122 SMART SM01374 1 122 1.4E-86 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RM11_RS04075 8912df83fe65afc2eaed6f440b9a9e1b 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.9E-57 T 22-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 RM11_RS04075 8912df83fe65afc2eaed6f440b9a9e1b 122 PANTHER PTHR11761 1 122 4.6E-77 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RM11_RS04075 8912df83fe65afc2eaed6f440b9a9e1b 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 22-04-2016 IPR019972 Ribosomal protein L14P, conserved site RM11_RS04075 8912df83fe65afc2eaed6f440b9a9e1b 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.8E-56 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RM11_RS04075 8912df83fe65afc2eaed6f440b9a9e1b 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 28.113 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RM11_RS04075 8912df83fe65afc2eaed6f440b9a9e1b 122 SUPERFAMILY SSF50193 1 122 4.32E-53 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 SMART SM00482 722 928 3.4E-119 T 22-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Pfam PF00476 DNA polymerase family A 587 966 8.6E-150 T 22-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 SMART SM00475 5 268 4.4E-115 T 22-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Gene3D G3DSA:1.10.150.20 748 854 1.7E-32 T 22-04-2016 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Pfam PF01612 3'-5' exonuclease 361 552 2.7E-33 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 SMART SM00279 179 214 2.1E-13 T 22-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 ProSitePatterns PS00447 DNA polymerase family A signature. 790 809 - T 22-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 177 270 1.9E-30 T 22-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 SUPERFAMILY SSF47807 177 291 1.05E-28 T 22-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 SUPERFAMILY SSF56672 556 968 2.33E-150 T 22-04-2016 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Gene3D G3DSA:3.30.420.10 359 577 1.2E-74 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 SUPERFAMILY SSF88723 5 175 2.03E-49 T 22-04-2016 IPR029060 PIN domain-like RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Gene3D G3DSA:3.40.50.1010 6 191 8.4E-64 T 22-04-2016 IPR029060 PIN domain-like RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 SUPERFAMILY SSF53098 357 552 9.49E-47 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PANTHER PTHR10133 345 967 0.0 T 22-04-2016 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PANTHER PTHR10133 2 288 0.0 T 22-04-2016 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Gene3D G3DSA:1.10.150.20 192 253 9.8E-25 T 22-04-2016 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Gene3D G3DSA:1.20.1060.10 578 699 1.3E-33 T 22-04-2016 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 911 924 2.3E-75 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 714 729 2.3E-75 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 790 815 2.3E-75 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 827 838 2.3E-75 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 881 897 2.3E-75 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 691 713 2.3E-75 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 736 759 2.3E-75 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 766 779 2.3E-75 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PRINTS PR00868 DNA-polymerase family A (pol I) signature 849 860 2.3E-75 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 SMART SM00474 359 553 2.7E-28 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 TIGRFAM TIGR00593 pola: DNA polymerase I 7 968 2.7E-287 T 22-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Gene3D G3DSA:3.30.70.370 855 968 1.7E-66 T 22-04-2016 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Gene3D G3DSA:3.30.70.370 700 747 1.7E-66 T 22-04-2016 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PANTHER PTHR10133:SF27 345 967 0.0 T 22-04-2016 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 PANTHER PTHR10133:SF27 2 288 0.0 T 22-04-2016 RM11_RS00030 99030774bab43aef1bbb522d42e66992 968 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 6 175 5.8E-52 T 22-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RM11_RS01020 58f66fe38c2a88d2675263fb42a32b13 233 Pfam PF02390 Putative methyltransferase 59 224 7.4E-33 T 22-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RM11_RS01020 58f66fe38c2a88d2675263fb42a32b13 233 Gene3D G3DSA:3.40.50.150 61 173 8.6E-6 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01020 58f66fe38c2a88d2675263fb42a32b13 233 SUPERFAMILY SSF53335 59 231 3.82E-23 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01020 58f66fe38c2a88d2675263fb42a32b13 233 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 14 233 25.31 T 22-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RM11_RS00360 c53df23e5e0db33488b721ff7f7014da 195 Gene3D G3DSA:1.10.530.10 41 164 1.4E-11 T 22-04-2016 RM11_RS00360 c53df23e5e0db33488b721ff7f7014da 195 SUPERFAMILY SSF53955 26 165 1.8E-21 T 22-04-2016 IPR023346 Lysozyme-like domain RM11_RS00360 c53df23e5e0db33488b721ff7f7014da 195 Pfam PF01464 Transglycosylase SLT domain 46 169 7.4E-5 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 Gene3D G3DSA:1.10.3210.10 290 394 1.6E-80 T 22-04-2016 IPR006674 HD domain RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 Gene3D G3DSA:1.10.3210.10 36 221 1.6E-80 T 22-04-2016 IPR006674 HD domain RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 PANTHER PTHR11373 16 169 8.8E-85 T 22-04-2016 RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 SMART SM00471 69 224 3.9E-11 T 22-04-2016 IPR003607 HD/PDEase domain RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 Pfam PF01966 HD domain 73 213 1.1E-13 T 22-04-2016 IPR006674 HD domain RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 13 393 38.738 T 22-04-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 SUPERFAMILY SSF109604 24 396 9.74E-89 T 22-04-2016 RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 PANTHER PTHR11373:SF25 16 169 8.8E-85 T 22-04-2016 RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 36 393 1.7E-102 T 22-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 Gene3D G3DSA:1.10.3410.10 222 285 2.0E-5 T 22-04-2016 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain RM11_RS03850 32fcd1ab90f3f8884ccec1617a627003 400 Pfam PF13286 Phosphohydrolase-associated domain 301 391 2.1E-24 T 22-04-2016 IPR026875 Phosphohydrolase-associated domain RM11_RS05955 86e8dfd2c916fa9529065aa0e0a8dfaf 596 SUPERFAMILY SSF52540 348 592 1.3E-91 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05955 86e8dfd2c916fa9529065aa0e0a8dfaf 596 ProSitePatterns PS00211 ABC transporters family signature. 494 508 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS05955 86e8dfd2c916fa9529065aa0e0a8dfaf 596 Pfam PF00005 ABC transporter 373 522 3.6E-35 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS05955 86e8dfd2c916fa9529065aa0e0a8dfaf 596 SUPERFAMILY SSF90123 26 336 4.32E-73 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RM11_RS05955 86e8dfd2c916fa9529065aa0e0a8dfaf 596 Pfam PF00664 ABC transporter transmembrane region 37 301 4.3E-51 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RM11_RS05955 86e8dfd2c916fa9529065aa0e0a8dfaf 596 PANTHER PTHR24221 16 596 8.0E-238 T 22-04-2016 RM11_RS05955 86e8dfd2c916fa9529065aa0e0a8dfaf 596 Gene3D G3DSA:3.40.50.300 354 587 2.8E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05955 86e8dfd2c916fa9529065aa0e0a8dfaf 596 Gene3D G3DSA:1.20.1560.10 28 341 1.7E-74 T 22-04-2016 RM11_RS05955 86e8dfd2c916fa9529065aa0e0a8dfaf 596 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 22 593 1.2E-241 T 22-04-2016 IPR011918 ABC transporter, ATP-binding/permease protein RM11_RS05955 86e8dfd2c916fa9529065aa0e0a8dfaf 596 SMART SM00382 382 568 2.5E-19 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS00950 a6d7d2e74eb63632868893ee78998a97 332 PIRSF PIRSF000545 15 332 4.0E-139 T 22-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RM11_RS00950 a6d7d2e74eb63632868893ee78998a97 332 PANTHER PTHR10285:SF7 293 325 1.0E-135 T 22-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RM11_RS00950 a6d7d2e74eb63632868893ee78998a97 332 PANTHER PTHR10285:SF7 15 277 1.0E-135 T 22-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RM11_RS00950 a6d7d2e74eb63632868893ee78998a97 332 SUPERFAMILY SSF52540 23 330 2.67E-73 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00950 a6d7d2e74eb63632868893ee78998a97 332 Hamap MF_00215 Pantothenate kinase [coaA]. 1 332 170.676 T 22-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RM11_RS00950 a6d7d2e74eb63632868893ee78998a97 332 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 105 258 3.4E-13 T 22-04-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 RM11_RS00950 a6d7d2e74eb63632868893ee78998a97 332 PANTHER PTHR10285 293 325 1.0E-135 T 22-04-2016 RM11_RS00950 a6d7d2e74eb63632868893ee78998a97 332 PANTHER PTHR10285 15 277 1.0E-135 T 22-04-2016 RM11_RS00950 a6d7d2e74eb63632868893ee78998a97 332 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 25 331 8.3E-123 T 22-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RM11_RS00950 a6d7d2e74eb63632868893ee78998a97 332 Gene3D G3DSA:3.40.50.300 24 331 2.6E-100 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 SUPERFAMILY SSF52374 116 465 9.12E-84 T 22-04-2016 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 Gene3D G3DSA:1.10.730.10 461 584 7.4E-33 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 PANTHER PTHR11956 1 305 1.9E-177 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 PANTHER PTHR11956 321 584 1.9E-177 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 Gene3D G3DSA:3.30.1360.70 2 113 8.1E-26 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 Gene3D G3DSA:3.40.50.620 117 460 2.7E-94 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 Pfam PF00750 tRNA synthetases class I (R) 103 183 7.6E-13 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 Pfam PF00750 tRNA synthetases class I (R) 315 417 9.5E-7 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 162 175 1.6E-24 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 323 344 1.6E-24 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 138 154 1.6E-24 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 123 138 1.6E-24 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 PANTHER PTHR11956:SF6 1 305 1.9E-177 T 22-04-2016 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 PANTHER PTHR11956:SF6 321 584 1.9E-177 T 22-04-2016 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 133 142 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 SUPERFAMILY SSF47323 448 584 1.11E-32 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 Pfam PF05746 DALR anticodon binding domain 454 584 9.8E-31 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 8 94 1.1E-17 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 SMART SM00836 454 584 1.4E-52 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 18 584 2.4E-114 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 SMART SM01016 5 94 1.3E-25 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 584 23.778 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS03855 d1c9c00f958499432271255c354b96d3 585 SUPERFAMILY SSF55190 20 114 3.79E-19 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RM11_RS05400 6fe82cb7eaefa6413270883ba7e99c1e 474 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 462 1.9E-6 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS05400 6fe82cb7eaefa6413270883ba7e99c1e 474 SMART SM00387 366 465 0.0025 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS05400 6fe82cb7eaefa6413270883ba7e99c1e 474 SUPERFAMILY SSF55874 334 463 1.17E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS05400 6fe82cb7eaefa6413270883ba7e99c1e 474 Pfam PF07568 Histidine kinase 271 340 9.8E-15 T 22-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain RM11_RS05400 6fe82cb7eaefa6413270883ba7e99c1e 474 Gene3D G3DSA:3.30.565.10 323 463 3.2E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 SUPERFAMILY SSF52935 320 470 4.06E-39 T 22-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 Gene3D G3DSA:2.40.33.10 76 167 9.5E-23 T 22-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 470 4.5E-141 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 Pfam PF00224 Pyruvate kinase, barrel domain 5 335 5.8E-101 T 22-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 PRINTS PR01050 Pyruvate kinase family signature 187 201 6.3E-62 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 PRINTS PR01050 Pyruvate kinase family signature 241 265 6.3E-62 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 PRINTS PR01050 Pyruvate kinase family signature 310 326 6.3E-62 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 PRINTS PR01050 Pyruvate kinase family signature 62 78 6.3E-62 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 PRINTS PR01050 Pyruvate kinase family signature 214 240 6.3E-62 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 PRINTS PR01050 Pyruvate kinase family signature 291 309 6.3E-62 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 PRINTS PR01050 Pyruvate kinase family signature 266 290 6.3E-62 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 PANTHER PTHR11817 3 477 7.1E-179 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 Gene3D G3DSA:3.40.1380.20 324 467 2.4E-43 T 22-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 SUPERFAMILY SSF51621 3 78 1.19E-87 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 SUPERFAMILY SSF51621 168 339 1.19E-87 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 SUPERFAMILY SSF50800 73 167 7.85E-22 T 22-04-2016 IPR011037 Pyruvate kinase-like, insert domain RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 Gene3D G3DSA:3.20.20.60 5 75 1.4E-89 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 Gene3D G3DSA:3.20.20.60 169 323 1.4E-89 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 ProSitePatterns PS00110 Pyruvate kinase active site signature. 212 224 - T 22-04-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 PANTHER PTHR11817:SF3 3 477 7.1E-179 T 22-04-2016 RM11_RS06000 775121fdfe2a4e469ddbc1d8f48cdbda 478 Pfam PF02887 Pyruvate kinase, alpha/beta domain 355 467 6.7E-30 T 22-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS03925 e96313afb7958b9cc1d27b0fef902023 196 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 36 190 2.9E-44 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RM11_RS03925 e96313afb7958b9cc1d27b0fef902023 196 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 68 85 - T 22-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RM11_RS03925 e96313afb7958b9cc1d27b0fef902023 196 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 5.3E-12 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RM11_RS03925 e96313afb7958b9cc1d27b0fef902023 196 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 140 152 5.3E-12 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RM11_RS03925 e96313afb7958b9cc1d27b0fef902023 196 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 153 168 5.3E-12 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RM11_RS03925 e96313afb7958b9cc1d27b0fef902023 196 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 5.3E-12 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RM11_RS03925 e96313afb7958b9cc1d27b0fef902023 196 Gene3D G3DSA:2.40.100.10 18 193 1.3E-45 T 22-04-2016 IPR029000 Cyclophilin-like domain RM11_RS03925 e96313afb7958b9cc1d27b0fef902023 196 SUPERFAMILY SSF50891 28 191 3.8E-46 T 22-04-2016 IPR029000 Cyclophilin-like domain RM11_RS03925 e96313afb7958b9cc1d27b0fef902023 196 PANTHER PTHR11071 41 90 6.1E-35 T 22-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RM11_RS03925 e96313afb7958b9cc1d27b0fef902023 196 PANTHER PTHR11071 106 180 6.1E-35 T 22-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RM11_RS05020 99448eb961d5e0ec5635c921b1e36d32 220 SUPERFAMILY SSF88697 17 206 2.98E-39 T 22-04-2016 IPR015947 PUA-like domain RM11_RS05020 99448eb961d5e0ec5635c921b1e36d32 220 PANTHER PTHR10046 13 204 4.2E-19 T 22-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RM11_RS05020 99448eb961d5e0ec5635c921b1e36d32 220 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 18 206 1.8E-24 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RM11_RS05020 99448eb961d5e0ec5635c921b1e36d32 220 SMART SM00464 17 207 1.6E-8 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RM11_RS00850 c1ebc1f6e0a66ce047a0c33d4e5a39d4 348 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS00850 c1ebc1f6e0a66ce047a0c33d4e5a39d4 348 Pfam PF00005 ABC transporter 21 162 5.0E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS00850 c1ebc1f6e0a66ce047a0c33d4e5a39d4 348 SUPERFAMILY SSF52540 3 243 1.28E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00850 c1ebc1f6e0a66ce047a0c33d4e5a39d4 348 Gene3D G3DSA:3.40.50.300 3 235 1.6E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00850 c1ebc1f6e0a66ce047a0c33d4e5a39d4 348 SUPERFAMILY SSF50331 237 344 2.31E-12 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RM11_RS00850 c1ebc1f6e0a66ce047a0c33d4e5a39d4 348 SMART SM00382 29 212 5.2E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS00850 c1ebc1f6e0a66ce047a0c33d4e5a39d4 348 PANTHER PTHR24220 5 250 2.1E-153 T 22-04-2016 RM11_RS00850 c1ebc1f6e0a66ce047a0c33d4e5a39d4 348 PANTHER PTHR24220:SF151 5 250 2.1E-153 T 22-04-2016 RM11_RS00290 9acf732d24a98f34ff9428b19f4b1d69 240 PANTHER PTHR26402 9 240 1.6E-105 T 22-04-2016 RM11_RS00290 9acf732d24a98f34ff9428b19f4b1d69 240 Gene3D G3DSA:1.10.10.10 139 238 8.1E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS00290 9acf732d24a98f34ff9428b19f4b1d69 240 Pfam PF00072 Response regulator receiver domain 11 120 2.3E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS00290 9acf732d24a98f34ff9428b19f4b1d69 240 SMART SM00862 161 237 3.4E-22 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS00290 9acf732d24a98f34ff9428b19f4b1d69 240 PANTHER PTHR26402:SF476 9 240 1.6E-105 T 22-04-2016 RM11_RS00290 9acf732d24a98f34ff9428b19f4b1d69 240 SMART SM00448 9 119 8.5E-39 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS00290 9acf732d24a98f34ff9428b19f4b1d69 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 237 4.0E-22 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS00290 9acf732d24a98f34ff9428b19f4b1d69 240 Gene3D G3DSA:3.40.50.2300 9 131 2.2E-38 T 22-04-2016 RM11_RS00290 9acf732d24a98f34ff9428b19f4b1d69 240 SUPERFAMILY SSF52172 10 188 1.57E-39 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS00185 d3479a31150b89cffd48de0fb60bb5ca 528 PANTHER PTHR10566 48 445 5.7E-166 T 22-04-2016 RM11_RS00185 d3479a31150b89cffd48de0fb60bb5ca 528 Pfam PF03109 ABC1 family 114 234 9.1E-25 T 22-04-2016 IPR004147 UbiB domain RM11_RS00185 d3479a31150b89cffd48de0fb60bb5ca 528 Gene3D G3DSA:3.90.1200.10 253 312 3.3E-5 T 22-04-2016 RM11_RS00185 d3479a31150b89cffd48de0fb60bb5ca 528 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 8 444 9.4E-165 T 22-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 RM11_RS00185 d3479a31150b89cffd48de0fb60bb5ca 528 PANTHER PTHR10566:SF79 48 445 5.7E-166 T 22-04-2016 RM11_RS00185 d3479a31150b89cffd48de0fb60bb5ca 528 SUPERFAMILY SSF56112 96 162 1.75E-34 T 22-04-2016 IPR011009 Protein kinase-like domain RM11_RS00185 d3479a31150b89cffd48de0fb60bb5ca 528 SUPERFAMILY SSF56112 197 436 1.75E-34 T 22-04-2016 IPR011009 Protein kinase-like domain RM11_RS02485 951a26868326739c6b0364db9595b1b3 254 Gene3D G3DSA:3.20.20.70 6 252 3.5E-86 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS02485 951a26868326739c6b0364db9595b1b3 254 SUPERFAMILY SSF51351 5 251 6.28E-83 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RM11_RS02485 951a26868326739c6b0364db9595b1b3 254 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 8 241 4.0E-49 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RM11_RS02485 951a26868326739c6b0364db9595b1b3 254 ProSitePatterns PS00171 Triosephosphate isomerase active site. 167 177 - T 22-04-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RM11_RS02485 951a26868326739c6b0364db9595b1b3 254 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 5 251 35.806 T 22-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RM11_RS02485 951a26868326739c6b0364db9595b1b3 254 PANTHER PTHR21139 1 252 4.2E-92 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RM11_RS02485 951a26868326739c6b0364db9595b1b3 254 Pfam PF00121 Triosephosphate isomerase 8 248 3.7E-77 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 Gene3D G3DSA:3.40.50.1820 435 669 1.2E-29 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 PANTHER PTHR11757 8 693 3.1E-258 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 SUPERFAMILY SSF53474 432 685 2.13E-39 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 461 479 6.7E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 545 565 6.7E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 515 534 6.7E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 604 619 6.7E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 622 644 6.7E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 487 511 6.7E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 SUPERFAMILY SSF50993 5 425 4.71E-81 T 22-04-2016 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 17 417 7.4E-78 T 22-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 Pfam PF00326 Prolyl oligopeptidase family 477 693 7.5E-64 T 22-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 PANTHER PTHR11757:SF3 8 693 3.1E-258 T 22-04-2016 RM11_RS01960 03e6c82461a31cfb1a4a7eef3ffa732c 697 Gene3D G3DSA:2.130.10.120 88 421 2.6E-90 T 22-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RM11_RS02210 adad554052ff848142bc15cf56155cff 286 Pfam PF02569 Pantoate-beta-alanine ligase 4 280 2.2E-95 T 22-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RM11_RS02210 adad554052ff848142bc15cf56155cff 286 Gene3D G3DSA:3.30.1300.10 177 284 3.1E-21 T 22-04-2016 RM11_RS02210 adad554052ff848142bc15cf56155cff 286 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 28 88 7.2E-8 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RM11_RS02210 adad554052ff848142bc15cf56155cff 286 PANTHER PTHR21299 1 286 3.2E-117 T 22-04-2016 RM11_RS02210 adad554052ff848142bc15cf56155cff 286 Hamap MF_00158 Pantothenate synthetase [panC]. 4 282 38.368 T 22-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RM11_RS02210 adad554052ff848142bc15cf56155cff 286 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 3 282 3.3E-98 T 22-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RM11_RS02210 adad554052ff848142bc15cf56155cff 286 PANTHER PTHR21299:SF1 1 286 3.2E-117 T 22-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RM11_RS02210 adad554052ff848142bc15cf56155cff 286 SUPERFAMILY SSF52374 2 283 8.31E-98 T 22-04-2016 RM11_RS02210 adad554052ff848142bc15cf56155cff 286 Gene3D G3DSA:3.40.50.620 2 176 3.4E-76 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS04060 a3d780c5c7663c808d16e3bb80c8f9ad 101 SUPERFAMILY SSF57716 2 101 1.85E-33 T 22-04-2016 RM11_RS04060 a3d780c5c7663c808d16e3bb80c8f9ad 101 Gene3D G3DSA:4.10.830.10 41 101 2.1E-27 T 22-04-2016 RM11_RS04060 a3d780c5c7663c808d16e3bb80c8f9ad 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.729 T 22-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid RM11_RS04060 a3d780c5c7663c808d16e3bb80c8f9ad 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 22-04-2016 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 RM11_RS04060 a3d780c5c7663c808d16e3bb80c8f9ad 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 8.8E-22 T 22-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05010 2e5b7561c4d40eea1bb84ee32be368ce 122 Gene3D G3DSA:2.40.50.100 4 121 2.5E-49 T 22-04-2016 RM11_RS05010 2e5b7561c4d40eea1bb84ee32be368ce 122 Pfam PF01597 Glycine cleavage H-protein 5 120 5.2E-43 T 22-04-2016 IPR002930 Glycine cleavage system H-protein RM11_RS05010 2e5b7561c4d40eea1bb84ee32be368ce 122 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 44 73 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RM11_RS05010 2e5b7561c4d40eea1bb84ee32be368ce 122 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 120 1.6E-44 T 22-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 RM11_RS05010 2e5b7561c4d40eea1bb84ee32be368ce 122 SUPERFAMILY SSF51230 2 121 1.18E-42 T 22-04-2016 IPR011053 Single hybrid motif RM11_RS05010 2e5b7561c4d40eea1bb84ee32be368ce 122 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 122 28.049 T 22-04-2016 IPR002930 Glycine cleavage system H-protein RM11_RS05010 2e5b7561c4d40eea1bb84ee32be368ce 122 PANTHER PTHR11715 5 121 8.3E-60 T 22-04-2016 IPR002930 Glycine cleavage system H-protein RM11_RS04845 66f440d050f8ce79258b824c8b904c93 130 Gene3D G3DSA:3.30.230.10 4 111 1.1E-25 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RM11_RS04845 66f440d050f8ce79258b824c8b904c93 130 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 58 72 - T 22-04-2016 IPR020539 Ribonuclease P, conserved site GO:0004526 RM11_RS04845 66f440d050f8ce79258b824c8b904c93 130 SUPERFAMILY SSF54211 3 114 1.11E-21 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS04845 66f440d050f8ce79258b824c8b904c93 130 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 3 119 15.206 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RM11_RS04845 66f440d050f8ce79258b824c8b904c93 130 Pfam PF00825 Ribonuclease P 6 111 6.1E-21 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RM11_RS04845 66f440d050f8ce79258b824c8b904c93 130 PANTHER PTHR33992 8 111 5.7E-18 T 22-04-2016 RM11_RS04845 66f440d050f8ce79258b824c8b904c93 130 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 11 109 3.0E-18 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RM11_RS04845 66f440d050f8ce79258b824c8b904c93 130 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 7 110 6.0E-14 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RM11_RS01130 6bcfcf1a89a2896830eb1affabdfb598 312 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 122 293 1.1E-72 T 22-04-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RM11_RS01130 6bcfcf1a89a2896830eb1affabdfb598 312 SUPERFAMILY SSF56059 122 308 6.88E-57 T 22-04-2016 RM11_RS01130 6bcfcf1a89a2896830eb1affabdfb598 312 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 309 1.8E-121 T 22-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RM11_RS01130 6bcfcf1a89a2896830eb1affabdfb598 312 Gene3D G3DSA:3.30.470.20 190 295 4.3E-46 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS01130 6bcfcf1a89a2896830eb1affabdfb598 312 Gene3D G3DSA:3.30.1490.20 135 189 2.9E-26 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS01130 6bcfcf1a89a2896830eb1affabdfb598 312 Gene3D G3DSA:3.40.50.20 1 127 3.8E-47 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS01130 6bcfcf1a89a2896830eb1affabdfb598 312 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 118 6.9E-39 T 22-04-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RM11_RS01130 6bcfcf1a89a2896830eb1affabdfb598 312 Hamap MF_00162 Glutathione synthetase [gshB]. 1 312 153.413 T 22-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RM11_RS01130 6bcfcf1a89a2896830eb1affabdfb598 312 SUPERFAMILY SSF52440 1 119 1.76E-38 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS02685 e32a5db55417cf72e473d3df0ead5ccf 309 PANTHER PTHR30606 4 307 7.4E-52 T 22-04-2016 RM11_RS02685 e32a5db55417cf72e473d3df0ead5ccf 309 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 18 307 2.2E-45 T 22-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 SUPERFAMILY SSF55021 341 416 2.41E-21 T 22-04-2016 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 22-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 PIRSF PIRSF000726 59 418 2.8E-120 T 22-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 Pfam PF00696 Amino acid kinase family 3 231 6.0E-47 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 Pfam PF01842 ACT domain 279 337 5.2E-12 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 SUPERFAMILY SSF53633 3 255 2.62E-69 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 SUPERFAMILY SSF55021 259 339 4.58E-19 T 22-04-2016 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 PANTHER PTHR21499:SF27 1 417 1.8E-147 T 22-04-2016 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 3 413 2.1E-122 T 22-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 Pfam PF13840 ACT domain 348 410 7.3E-14 T 22-04-2016 IPR027795 GATS-like ACT domain RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 64 413 4.6E-109 T 22-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 Gene3D G3DSA:3.30.70.260 282 345 1.5E-6 T 22-04-2016 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 Gene3D G3DSA:3.40.1160.10 1 258 8.7E-72 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RM11_RS01530 a4eb46c0777118a451fdce752cdebce9 418 PANTHER PTHR21499 1 417 1.8E-147 T 22-04-2016 RM11_RS04685 386372330c8250c0a3b263b9f30695b5 302 SUPERFAMILY SSF160240 216 287 7.32E-20 T 22-04-2016 RM11_RS04685 386372330c8250c0a3b263b9f30695b5 302 Pfam PF16916 Dimerisation domain of Zinc Transporter 213 287 1.4E-20 T 22-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RM11_RS04685 386372330c8250c0a3b263b9f30695b5 302 Gene3D G3DSA:3.30.70.1350 209 288 8.7E-23 T 22-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RM11_RS04685 386372330c8250c0a3b263b9f30695b5 302 PANTHER PTHR11562:SF55 1 296 3.7E-83 T 22-04-2016 RM11_RS04685 386372330c8250c0a3b263b9f30695b5 302 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 288 8.9E-62 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RM11_RS04685 386372330c8250c0a3b263b9f30695b5 302 PANTHER PTHR11562 1 296 3.7E-83 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RM11_RS04685 386372330c8250c0a3b263b9f30695b5 302 SUPERFAMILY SSF161111 9 206 1.28E-49 T 22-04-2016 RM11_RS04685 386372330c8250c0a3b263b9f30695b5 302 Gene3D G3DSA:1.20.1510.10 11 205 9.9E-42 T 22-04-2016 IPR027469 Cation efflux protein transmembrane domain RM11_RS04685 386372330c8250c0a3b263b9f30695b5 302 Pfam PF01545 Cation efflux family 13 205 5.4E-39 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 1 738 23.611 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 Pfam PF05746 DALR anticodon binding domain 628 728 1.2E-7 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 Gene3D G3DSA:1.10.3210.10 393 492 3.2E-4 T 22-04-2016 IPR006674 HD domain RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 PANTHER PTHR30075 1 344 4.5E-236 T 22-04-2016 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 PANTHER PTHR30075 365 549 4.5E-236 T 22-04-2016 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 PANTHER PTHR30075 567 740 4.5E-236 T 22-04-2016 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 SUPERFAMILY SSF109604 380 518 6.28E-17 T 22-04-2016 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 Gene3D G3DSA:1.10.730.10 630 727 8.7E-5 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 4 597 1.6E-186 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 PANTHER PTHR30075:SF2 1 344 4.5E-236 T 22-04-2016 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 PANTHER PTHR30075:SF2 365 549 4.5E-236 T 22-04-2016 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 PANTHER PTHR30075:SF2 567 740 4.5E-236 T 22-04-2016 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 324 340 2.5E-17 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 5 18 2.5E-17 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 48 60 2.5E-17 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01585 8fb57df9fd87f9ff7a6eeb601a4e46c0 740 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 249 264 2.5E-17 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS00925 11249a386eb5565d0beb9ca96fb0a274 317 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 186 206 - T 22-04-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site RM11_RS00925 11249a386eb5565d0beb9ca96fb0a274 317 PANTHER PTHR10657:SF11 121 286 9.0E-41 T 22-04-2016 RM11_RS00925 11249a386eb5565d0beb9ca96fb0a274 317 Pfam PF13616 PPIC-type PPIASE domain 156 248 8.5E-26 T 22-04-2016 RM11_RS00925 11249a386eb5565d0beb9ca96fb0a274 317 PANTHER PTHR10657 121 286 9.0E-41 T 22-04-2016 RM11_RS00925 11249a386eb5565d0beb9ca96fb0a274 317 Gene3D G3DSA:3.10.50.40 156 272 1.3E-42 T 22-04-2016 RM11_RS00925 11249a386eb5565d0beb9ca96fb0a274 317 SUPERFAMILY SSF54534 158 247 1.85E-31 T 22-04-2016 RM11_RS00925 11249a386eb5565d0beb9ca96fb0a274 317 SUPERFAMILY SSF109998 49 187 1.22E-11 T 22-04-2016 IPR027304 Trigger factor/SurA domain RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 304 8.4E-32 T 22-04-2016 IPR020801 Polyketide synthase, acyl transferase domain RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 PIRSF PIRSF000446 1 313 1.7E-91 T 22-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 SUPERFAMILY SSF52151 3 124 1.05E-68 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 SUPERFAMILY SSF52151 192 312 1.05E-68 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 293 3.7E-92 T 22-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 Gene3D G3DSA:3.40.366.10 199 308 5.7E-61 T 22-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 Gene3D G3DSA:3.40.366.10 4 124 5.7E-61 T 22-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 Pfam PF00698 Acyl transferase domain 5 278 2.9E-35 T 22-04-2016 IPR014043 Acyl transferase RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 PANTHER PTHR10982 4 310 3.2E-121 T 22-04-2016 RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 SUPERFAMILY SSF55048 130 199 3.53E-16 T 22-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 RM11_RS02315 e75712151672413243cc2a4bd6ca72a0 314 Gene3D G3DSA:3.30.70.250 129 198 3.4E-27 T 22-04-2016 RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 SUPERFAMILY SSF52518 338 522 2.02E-66 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 ProSitePatterns PS00802 Transketolase signature 2. 464 480 - T 22-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 Gene3D G3DSA:3.40.50.920 536 661 4.6E-36 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 TIGRFAM TIGR00232 tktlase_bact: transketolase 9 657 1.4E-242 T 22-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 7 316 2.1E-136 T 22-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 Pfam PF02779 Transketolase, pyrimidine binding domain 351 521 1.0E-44 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 ProSitePatterns PS00801 Transketolase signature 1. 15 35 - T 22-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 SUPERFAMILY SSF52518 4 315 2.28E-113 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 Pfam PF02780 Transketolase, C-terminal domain 544 651 5.5E-9 T 22-04-2016 IPR033248 Transketolase, C-terminal domain RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 Gene3D G3DSA:3.40.50.970 325 528 6.1E-74 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 SMART SM00861 351 522 2.0E-64 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 SUPERFAMILY SSF52922 531 666 9.26E-36 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RM11_RS05980 7a4716f1bb4224bf17b045fdd5771096 668 Gene3D G3DSA:3.40.50.970 4 314 2.6E-120 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 2 616 40.128 T 22-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 SUPERFAMILY SSF51905 94 257 2.08E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 SUPERFAMILY SSF51905 1 63 2.08E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 PANTHER PTHR11806 4 620 0.0 T 22-04-2016 RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 PANTHER PTHR11806:SF0 4 620 0.0 T 22-04-2016 RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 364 387 - T 22-04-2016 IPR020595 MnmG-related, conserved site RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4 614 1.6E-248 T 22-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 Pfam PF01134 Glucose inhibited division protein A 5 393 1.5E-163 T 22-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 SMART SM01228 538 609 6.7E-27 T 22-04-2016 RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 Pfam PF13932 GidA associated domain 398 607 3.2E-65 T 22-04-2016 IPR026904 GidA associated domain 3 RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 269 283 - T 22-04-2016 IPR020595 MnmG-related, conserved site RM11_RS06765 746289d33f685af6a88593c626fa90eb 622 Gene3D G3DSA:3.50.50.60 4 170 5.5E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04040 16ee1dcb91ac7b9e8f21b91e8c840e69 182 Gene3D G3DSA:3.30.160.20 15 77 6.8E-29 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RM11_RS04040 16ee1dcb91ac7b9e8f21b91e8c840e69 182 PANTHER PTHR13718 7 166 4.1E-65 T 22-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 RM11_RS04040 16ee1dcb91ac7b9e8f21b91e8c840e69 182 Gene3D G3DSA:3.30.230.10 82 164 1.9E-31 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RM11_RS04040 16ee1dcb91ac7b9e8f21b91e8c840e69 182 Pfam PF03719 Ribosomal protein S5, C-terminal domain 92 163 1.1E-28 T 22-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 RM11_RS04040 16ee1dcb91ac7b9e8f21b91e8c840e69 182 ProSitePatterns PS00585 Ribosomal protein S5 signature. 33 65 - T 22-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site RM11_RS04040 16ee1dcb91ac7b9e8f21b91e8c840e69 182 Pfam PF00333 Ribosomal protein S5, N-terminal domain 17 80 2.8E-28 T 22-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS04040 16ee1dcb91ac7b9e8f21b91e8c840e69 182 SUPERFAMILY SSF54768 13 81 4.71E-23 T 22-04-2016 RM11_RS04040 16ee1dcb91ac7b9e8f21b91e8c840e69 182 SUPERFAMILY SSF54211 85 164 4.3E-25 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS04040 16ee1dcb91ac7b9e8f21b91e8c840e69 182 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 171 35.211 T 22-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RM11_RS04040 16ee1dcb91ac7b9e8f21b91e8c840e69 182 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 15 166 1.9E-64 T 22-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RM11_RS02770 e0612caeb21b255cd035f68bc00501d6 156 PANTHER PTHR11078 11 155 8.7E-36 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 RM11_RS02770 e0612caeb21b255cd035f68bc00501d6 156 Gene3D G3DSA:1.10.940.10 15 154 3.3E-35 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RM11_RS02770 e0612caeb21b255cd035f68bc00501d6 156 SUPERFAMILY SSF48013 16 150 2.88E-35 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RM11_RS02770 e0612caeb21b255cd035f68bc00501d6 156 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 13 155 21.185 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 RM11_RS02770 e0612caeb21b255cd035f68bc00501d6 156 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 16 154 5.2E-38 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 RM11_RS02770 e0612caeb21b255cd035f68bc00501d6 156 Pfam PF01029 NusB family 19 152 1.3E-33 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RM11_RS00980 90ce8c8c62eab4ba251bc71bbac1646a 89 PANTHER PTHR23321 1 89 1.3E-39 T 22-04-2016 RM11_RS00980 90ce8c8c62eab4ba251bc71bbac1646a 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00980 90ce8c8c62eab4ba251bc71bbac1646a 89 SUPERFAMILY SSF47060 3 89 2.18E-35 T 22-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RM11_RS00980 90ce8c8c62eab4ba251bc71bbac1646a 89 SMART SM01387 8 88 2.3E-51 T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00980 90ce8c8c62eab4ba251bc71bbac1646a 89 Gene3D G3DSA:1.10.287.10 3 89 9.9E-39 T 22-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RM11_RS00980 90ce8c8c62eab4ba251bc71bbac1646a 89 Pfam PF00312 Ribosomal protein S15 8 88 1.3E-36 T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00980 90ce8c8c62eab4ba251bc71bbac1646a 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 2.8E-38 T 22-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RM11_RS00980 90ce8c8c62eab4ba251bc71bbac1646a 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 12 88 7.0E-39 T 22-04-2016 RM11_RS00980 90ce8c8c62eab4ba251bc71bbac1646a 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.453 T 22-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RM11_RS04650 8ddc08dc9b85aeec53de2dcdef1b39e3 157 Pfam PF00588 SpoU rRNA Methylase family 3 141 2.5E-32 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RM11_RS04650 8ddc08dc9b85aeec53de2dcdef1b39e3 157 PANTHER PTHR12029 2 153 2.0E-59 T 22-04-2016 RM11_RS04650 8ddc08dc9b85aeec53de2dcdef1b39e3 157 Gene3D G3DSA:3.40.1280.10 1 153 4.5E-55 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RM11_RS04650 8ddc08dc9b85aeec53de2dcdef1b39e3 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 3 152 30.296 T 22-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RM11_RS04650 8ddc08dc9b85aeec53de2dcdef1b39e3 157 SUPERFAMILY SSF75217 2 152 1.26E-40 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases RM11_RS04650 8ddc08dc9b85aeec53de2dcdef1b39e3 157 PIRSF PIRSF029256 2 155 7.8E-58 T 22-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RM11_RS04650 8ddc08dc9b85aeec53de2dcdef1b39e3 157 PANTHER PTHR12029:SF31 2 153 2.0E-59 T 22-04-2016 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 Gene3D G3DSA:2.40.10.10 186 288 2.5E-44 T 22-04-2016 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 Pfam PF13180 PDZ domain 309 378 1.2E-9 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 SUPERFAMILY SSF50494 109 297 1.05E-62 T 22-04-2016 IPR009003 Peptidase S1, PA clan RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 SUPERFAMILY SSF50494 23 68 1.05E-62 T 22-04-2016 IPR009003 Peptidase S1, PA clan RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 SUPERFAMILY SSF50156 410 502 5.39E-12 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 46 497 4.7E-138 T 22-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 Gene3D G3DSA:2.30.42.10 410 503 9.2E-14 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 Gene3D G3DSA:2.30.42.10 289 381 3.4E-20 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 Gene3D G3DSA:2.40.10.10 106 185 3.0E-29 T 22-04-2016 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 Pfam PF13365 Trypsin-like peptidase domain 112 248 7.7E-33 T 22-04-2016 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 PRINTS PR00834 HtrA/DegQ protease family signature 122 134 2.6E-50 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 PRINTS PR00834 HtrA/DegQ protease family signature 219 236 2.6E-50 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 PRINTS PR00834 HtrA/DegQ protease family signature 327 339 2.6E-50 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 PRINTS PR00834 HtrA/DegQ protease family signature 185 209 2.6E-50 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 PRINTS PR00834 HtrA/DegQ protease family signature 241 258 2.6E-50 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 PRINTS PR00834 HtrA/DegQ protease family signature 143 163 2.6E-50 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 SMART SM00228 409 494 0.0026 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 SMART SM00228 287 369 0.19 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS04300 7572b8314ddf6b2e360e7047c89355ef 505 SUPERFAMILY SSF50156 270 378 7.99E-14 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 SUPERFAMILY SSF53335 11 112 3.05E-44 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 SUPERFAMILY SSF53335 212 306 3.05E-44 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 SUPERFAMILY SSF81799 113 212 6.15E-32 T 22-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 Gene3D G3DSA:3.40.50.150 215 308 1.5E-44 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 Gene3D G3DSA:3.40.50.150 11 109 1.5E-44 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 PANTHER PTHR11265:SF0 9 309 4.8E-122 T 22-04-2016 RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 PIRSF PIRSF004486 6 308 3.6E-94 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 Pfam PF01795 MraW methylase family 10 303 1.3E-90 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 Gene3D G3DSA:1.10.150.170 111 214 8.4E-34 T 22-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 PANTHER PTHR11265 9 309 4.8E-122 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 11 307 34.532 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS04465 9ff70391398e43b9a6e5f93936cd0cbf 332 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 9 303 9.7E-86 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS06500 7b7bfe7b6426e8b1c13fe449ea1c8502 227 Pfam PF00072 Response regulator receiver domain 7 117 6.8E-17 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS06500 7b7bfe7b6426e8b1c13fe449ea1c8502 227 PANTHER PTHR26402 4 226 2.9E-60 T 22-04-2016 RM11_RS06500 7b7bfe7b6426e8b1c13fe449ea1c8502 227 Gene3D G3DSA:3.40.50.2300 4 126 3.3E-24 T 22-04-2016 RM11_RS06500 7b7bfe7b6426e8b1c13fe449ea1c8502 227 Gene3D G3DSA:1.10.10.10 127 226 4.5E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS06500 7b7bfe7b6426e8b1c13fe449ea1c8502 227 SUPERFAMILY SSF46894 125 226 5.39E-20 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RM11_RS06500 7b7bfe7b6426e8b1c13fe449ea1c8502 227 SMART SM00448 4 116 1.6E-17 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS06500 7b7bfe7b6426e8b1c13fe449ea1c8502 227 SUPERFAMILY SSF52172 4 131 1.71E-26 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS06500 7b7bfe7b6426e8b1c13fe449ea1c8502 227 SMART SM00862 150 225 2.1E-16 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS06500 7b7bfe7b6426e8b1c13fe449ea1c8502 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 5.0E-21 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS06500 7b7bfe7b6426e8b1c13fe449ea1c8502 227 PANTHER PTHR26402:SF50 4 226 2.9E-60 T 22-04-2016 RM11_RS01215 900bbc79d4bb9aa835541fff0a6740f4 148 SUPERFAMILY SSF53927 5 147 8.86E-47 T 22-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RM11_RS01215 900bbc79d4bb9aa835541fff0a6740f4 148 Pfam PF14437 MafB19-like deaminase 8 146 5.1E-25 T 22-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RM11_RS01215 900bbc79d4bb9aa835541fff0a6740f4 148 Gene3D G3DSA:3.40.140.10 6 145 4.4E-48 T 22-04-2016 RM11_RS01215 900bbc79d4bb9aa835541fff0a6740f4 148 PANTHER PTHR11079 6 147 3.8E-39 T 22-04-2016 RM11_RS01215 900bbc79d4bb9aa835541fff0a6740f4 148 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 6 147 41.454 T 22-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RM11_RS01215 900bbc79d4bb9aa835541fff0a6740f4 148 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 88 - T 22-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RM11_RS02155 c2e594c4c9449aefffda579fb94b54c6 158 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 13 137 3.0E-67 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 RM11_RS02155 c2e594c4c9449aefffda579fb94b54c6 158 Pfam PF01668 SmpB protein 12 76 2.3E-27 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 RM11_RS02155 c2e594c4c9449aefffda579fb94b54c6 158 SUPERFAMILY SSF74982 10 137 1.22E-48 T 22-04-2016 IPR023620 Small protein B RM11_RS02155 c2e594c4c9449aefffda579fb94b54c6 158 PANTHER PTHR30308:SF2 1 158 1.5E-70 T 22-04-2016 RM11_RS02155 c2e594c4c9449aefffda579fb94b54c6 158 TIGRFAM TIGR00086 smpB: SsrA-binding protein 12 155 6.4E-55 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 RM11_RS02155 c2e594c4c9449aefffda579fb94b54c6 158 PANTHER PTHR30308 1 158 1.5E-70 T 22-04-2016 RM11_RS02155 c2e594c4c9449aefffda579fb94b54c6 158 Gene3D G3DSA:2.40.280.10 11 132 3.8E-49 T 22-04-2016 IPR023620 Small protein B RM11_RS02155 c2e594c4c9449aefffda579fb94b54c6 158 Hamap MF_00023 SsrA-binding protein [smpB]. 1 158 68.44 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 Pfam PF08245 Mur ligase middle domain 105 307 4.7E-46 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 SUPERFAMILY SSF53623 97 327 7.33E-67 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 SUPERFAMILY SSF63418 16 96 6.67E-22 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 Pfam PF02875 Mur ligase family, glutamate ligase domain 329 412 4.3E-21 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 Gene3D G3DSA:3.40.1190.10 99 331 1.8E-64 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 Gene3D G3DSA:3.40.1390.10 18 96 6.3E-23 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 Gene3D G3DSA:3.90.190.20 332 471 1.5E-50 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 11 478 30.587 T 22-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 SUPERFAMILY SSF53244 329 481 6.8E-44 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 19 478 7.6E-139 T 22-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RM11_RS04450 08da04c0feaaf64a8e988991a15acb70 483 Pfam PF01225 Mur ligase family, catalytic domain 20 95 6.6E-13 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS05605 b9de6e6ff3cc9096d8754a30ac0b41aa 165 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 8 161 30.513 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RM11_RS05605 b9de6e6ff3cc9096d8754a30ac0b41aa 165 PANTHER PTHR11609 8 159 2.3E-74 T 22-04-2016 RM11_RS05605 b9de6e6ff3cc9096d8754a30ac0b41aa 165 SUPERFAMILY SSF52255 8 161 3.53E-62 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RM11_RS05605 b9de6e6ff3cc9096d8754a30ac0b41aa 165 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 8 159 3.8E-61 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RM11_RS05605 b9de6e6ff3cc9096d8754a30ac0b41aa 165 PANTHER PTHR11609:SF5 8 159 2.3E-74 T 22-04-2016 RM11_RS05605 b9de6e6ff3cc9096d8754a30ac0b41aa 165 PIRSF PIRSF001338 3 163 1.1E-61 T 22-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 RM11_RS05605 b9de6e6ff3cc9096d8754a30ac0b41aa 165 Pfam PF00731 AIR carboxylase 7 154 2.7E-59 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RM11_RS05605 b9de6e6ff3cc9096d8754a30ac0b41aa 165 SMART SM01001 6 157 1.2E-91 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RM11_RS05605 b9de6e6ff3cc9096d8754a30ac0b41aa 165 Gene3D G3DSA:3.40.50.7700 2 159 4.7E-69 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RM11_RS05615 a2c7597be8b953bde8742c0c0112f98d 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05615 a2c7597be8b953bde8742c0c0112f98d 41 SUPERFAMILY SSF57840 1 41 6.54E-12 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05615 a2c7597be8b953bde8742c0c0112f98d 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 15.944 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05615 a2c7597be8b953bde8742c0c0112f98d 41 Pfam PF00444 Ribosomal protein L36 1 41 2.1E-14 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05615 a2c7597be8b953bde8742c0c0112f98d 41 PANTHER PTHR18804 1 41 3.1E-13 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS05615 a2c7597be8b953bde8742c0c0112f98d 41 PANTHER PTHR18804:SF11 1 41 3.1E-13 T 22-04-2016 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 SUPERFAMILY SSF47789 250 326 4.45E-26 T 22-04-2016 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 Gene3D G3DSA:3.30.1360.10 178 230 8.8E-4 T 22-04-2016 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 SUPERFAMILY SSF56553 55 176 4.71E-41 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 257 328 4.0E-36 T 22-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 31 226 2.1E-21 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 Gene3D G3DSA:1.10.150.20 246 328 2.3E-36 T 22-04-2016 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 PANTHER PTHR32108 28 330 1.9E-132 T 22-04-2016 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 61 156 4.3E-22 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 Gene3D G3DSA:2.170.120.12 69 175 5.8E-45 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 Gene3D G3DSA:3.30.1360.10 20 68 1.4E-8 T 22-04-2016 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 PANTHER PTHR32108:SF0 28 330 1.9E-132 T 22-04-2016 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 26 317 3.5E-115 T 22-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 251 308 7.6E-25 T 22-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 SUPERFAMILY SSF55257 177 231 1.79E-28 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 SUPERFAMILY SSF55257 6 55 1.79E-28 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 SMART SM00662 25 232 3.3E-89 T 22-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS04005 be00dff40d1fc5af472294f461259b33 337 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 6 317 35.673 T 22-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 PANTHER PTHR24322 15 191 1.6E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 Pfam PF00106 short chain dehydrogenase 12 204 6.9E-46 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.1E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.1E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 2.1E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.1E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.1E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.1E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 SUPERFAMILY SSF51735 6 242 3.18E-58 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02265 8fdb07d195264d0e2c2f5e3ef03e136d 249 Gene3D G3DSA:3.40.50.720 5 239 5.9E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02660 a562088aa1fd9faddb7d7388116fc6dd 303 Gene3D G3DSA:3.40.50.1820 26 297 1.6E-8 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS02660 a562088aa1fd9faddb7d7388116fc6dd 303 Pfam PF12146 Serine aminopeptidase, S33 41 268 7.3E-12 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 RM11_RS02660 a562088aa1fd9faddb7d7388116fc6dd 303 SUPERFAMILY SSF53474 37 298 1.12E-8 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 649 6.7E-262 T 22-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 PANTHER PTHR22773 4 601 8.3E-252 T 22-04-2016 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 Pfam PF00361 Proton-conducting membrane transporter 131 442 8.9E-87 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 Pfam PF06455 NADH dehydrogenase subunit 5 C-terminus 524 645 3.7E-8 T 22-04-2016 IPR010934 NADH dehydrogenase subunit 5, C-terminal GO:0008137|GO:0042773|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 Pfam PF06455 NADH dehydrogenase subunit 5 C-terminus 445 498 5.8E-7 T 22-04-2016 IPR010934 NADH dehydrogenase subunit 5, C-terminal GO:0008137|GO:0042773|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 PANTHER PTHR22773:SF50 4 601 8.3E-252 T 22-04-2016 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 63 119 1.8E-23 T 22-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 435 454 1.4E-65 T 22-04-2016 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 234 255 1.4E-65 T 22-04-2016 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 256 282 1.4E-65 T 22-04-2016 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 324 336 1.4E-65 T 22-04-2016 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 155 176 1.4E-65 T 22-04-2016 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 80 105 1.4E-65 T 22-04-2016 RM11_RS02920 341dd70cd1edf84cf5fe2fd2bc94204e 654 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 108 128 1.4E-65 T 22-04-2016 RM11_RS02065 9256c595b591a2a951bfa0d71dd9796f 174 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 140 146 - T 22-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 RM11_RS02065 9256c595b591a2a951bfa0d71dd9796f 174 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 90 169 3.4E-33 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RM11_RS02065 9256c595b591a2a951bfa0d71dd9796f 174 SUPERFAMILY SSF53155 10 86 1.0E-11 T 22-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 RM11_RS02065 9256c595b591a2a951bfa0d71dd9796f 174 PANTHER PTHR10815 10 174 1.8E-61 T 22-04-2016 RM11_RS02065 9256c595b591a2a951bfa0d71dd9796f 174 Gene3D G3DSA:1.10.10.10 89 170 2.4E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS02065 9256c595b591a2a951bfa0d71dd9796f 174 PANTHER PTHR10815:SF9 10 174 1.8E-61 T 22-04-2016 RM11_RS02065 9256c595b591a2a951bfa0d71dd9796f 174 Gene3D G3DSA:3.30.160.70 10 86 4.6E-17 T 22-04-2016 RM11_RS02065 9256c595b591a2a951bfa0d71dd9796f 174 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 92 170 1.7E-28 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RM11_RS02065 9256c595b591a2a951bfa0d71dd9796f 174 SUPERFAMILY SSF46767 90 170 5.49E-29 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RM11_RS02495 969f9ac9ff8d6135b313bd367ec7db33 542 Hamap MF_01227 CTP synthase [pyrG]. 2 539 48.76 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RM11_RS02495 969f9ac9ff8d6135b313bd367ec7db33 542 Gene3D G3DSA:3.40.50.300 1 283 5.3E-124 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02495 969f9ac9ff8d6135b313bd367ec7db33 542 SUPERFAMILY SSF52540 1 267 1.85E-116 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02495 969f9ac9ff8d6135b313bd367ec7db33 542 Pfam PF06418 CTP synthase N-terminus 3 262 1.5E-118 T 22-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RM11_RS02495 969f9ac9ff8d6135b313bd367ec7db33 542 Pfam PF00117 Glutamine amidotransferase class-I 301 534 9.7E-53 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RM11_RS02495 969f9ac9ff8d6135b313bd367ec7db33 542 SUPERFAMILY SSF52317 289 537 3.06E-77 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS02495 969f9ac9ff8d6135b313bd367ec7db33 542 TIGRFAM TIGR00337 PyrG: CTP synthase 2 534 5.5E-223 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RM11_RS02495 969f9ac9ff8d6135b313bd367ec7db33 542 PANTHER PTHR11550 1 538 6.2E-294 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RM11_RS02495 969f9ac9ff8d6135b313bd367ec7db33 542 Gene3D G3DSA:3.40.50.880 288 538 3.3E-93 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 SUPERFAMILY SSF53720 5 417 2.23E-110 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 PANTHER PTHR11063 4 418 7.5E-163 T 22-04-2016 RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 PIRSF PIRSF000151 1 418 1.6E-167 T 22-04-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 14 407 7.3E-136 T 22-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 Gene3D G3DSA:3.40.605.10 376 417 6.8E-97 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 Gene3D G3DSA:3.40.605.10 3 226 6.8E-97 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 Gene3D G3DSA:3.40.309.10 229 375 1.6E-31 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 Pfam PF00171 Aldehyde dehydrogenase family 5 281 3.5E-12 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 324 346 - T 22-04-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 6 417 38.828 T 22-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RM11_RS00725 a909eeb6a278f310b2a7791c75005774 418 PANTHER PTHR11063:SF8 4 418 7.5E-163 T 22-04-2016 RM11_RS03145 de0fcd34f7d1fb5f3dc1a7ad97dfe132 264 Pfam PF04002 RadC-like JAB domain 143 260 1.5E-44 T 22-04-2016 IPR025657 RadC-like JAB domain RM11_RS03145 de0fcd34f7d1fb5f3dc1a7ad97dfe132 264 PANTHER PTHR30471 36 264 4.6E-75 T 22-04-2016 RM11_RS03145 de0fcd34f7d1fb5f3dc1a7ad97dfe132 264 TIGRFAM TIGR00608 radc: DNA repair protein RadC 51 260 5.5E-67 T 22-04-2016 IPR001405 RadC protein RM11_RS03145 de0fcd34f7d1fb5f3dc1a7ad97dfe132 264 Gene3D G3DSA:1.10.150.20 87 120 9.5E-6 T 22-04-2016 RM11_RS03145 de0fcd34f7d1fb5f3dc1a7ad97dfe132 264 SUPERFAMILY SSF47781 63 123 1.62E-8 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RM11_RS03145 de0fcd34f7d1fb5f3dc1a7ad97dfe132 264 Gene3D G3DSA:3.40.140.10 140 261 2.1E-49 T 22-04-2016 RM11_RS03145 de0fcd34f7d1fb5f3dc1a7ad97dfe132 264 PANTHER PTHR30471:SF3 36 264 4.6E-75 T 22-04-2016 RM11_RS03145 de0fcd34f7d1fb5f3dc1a7ad97dfe132 264 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 213 218 - T 22-04-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site RM11_RS03095 56d8f9f6cd37f583adb197170656370e 287 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 102 198 2.6E-41 T 22-04-2016 IPR012997 Rare lipoprotein A RM11_RS03095 56d8f9f6cd37f583adb197170656370e 287 SUPERFAMILY SSF50685 93 191 1.29E-11 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RM11_RS03095 56d8f9f6cd37f583adb197170656370e 287 Gene3D G3DSA:2.40.40.10 140 192 4.5E-4 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RM11_RS03095 56d8f9f6cd37f583adb197170656370e 287 Pfam PF03330 Lytic transglycolase 101 189 1.1E-26 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RM11_RS03095 56d8f9f6cd37f583adb197170656370e 287 PANTHER PTHR34183 81 195 1.7E-61 T 22-04-2016 RM11_RS03095 56d8f9f6cd37f583adb197170656370e 287 PANTHER PTHR34183:SF1 81 195 1.7E-61 T 22-04-2016 RM11_RS04960 0ecda53b160c00d9b59e7ab7bfadbd9c 523 PANTHER PTHR23501:SF51 17 514 1.2E-183 T 22-04-2016 RM11_RS04960 0ecda53b160c00d9b59e7ab7bfadbd9c 523 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 21 510 2.3E-130 T 22-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 RM11_RS04960 0ecda53b160c00d9b59e7ab7bfadbd9c 523 PANTHER PTHR23501 17 514 1.2E-183 T 22-04-2016 RM11_RS04960 0ecda53b160c00d9b59e7ab7bfadbd9c 523 Pfam PF07690 Major Facilitator Superfamily 27 420 1.4E-39 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RM11_RS04960 0ecda53b160c00d9b59e7ab7bfadbd9c 523 SUPERFAMILY SSF103473 8 199 2.22E-57 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS04960 0ecda53b160c00d9b59e7ab7bfadbd9c 523 SUPERFAMILY SSF103473 487 509 2.22E-57 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS04960 0ecda53b160c00d9b59e7ab7bfadbd9c 523 SUPERFAMILY SSF103473 259 430 2.22E-57 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS04960 0ecda53b160c00d9b59e7ab7bfadbd9c 523 Gene3D G3DSA:1.20.1250.20 20 196 1.9E-23 T 22-04-2016 RM11_RS04960 0ecda53b160c00d9b59e7ab7bfadbd9c 523 Gene3D G3DSA:1.20.1250.20 281 436 1.1E-20 T 22-04-2016 RM11_RS04960 0ecda53b160c00d9b59e7ab7bfadbd9c 523 Gene3D G3DSA:1.20.1250.20 492 512 1.1E-20 T 22-04-2016 RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 Gene3D G3DSA:1.10.287.110 2 88 6.2E-26 T 22-04-2016 IPR001623 DnaJ domain RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 SMART SM00271 2 60 3.2E-27 T 22-04-2016 IPR001623 DnaJ domain RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 PRINTS PR00625 DnaJ domain signature 5 23 1.3E-18 T 22-04-2016 IPR001623 DnaJ domain RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 PRINTS PR00625 DnaJ domain signature 40 60 1.3E-18 T 22-04-2016 IPR001623 DnaJ domain RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 PRINTS PR00625 DnaJ domain signature 23 38 1.3E-18 T 22-04-2016 IPR001623 DnaJ domain RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 SUPERFAMILY SSF49493 134 219 7.59E-14 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 SUPERFAMILY SSF46565 1 106 6.02E-25 T 22-04-2016 IPR001623 DnaJ domain RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 Pfam PF01556 DnaJ C terminal domain 143 284 1.7E-25 T 22-04-2016 IPR002939 Chaperone DnaJ, C-terminal RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 Pfam PF00226 DnaJ domain 3 65 2.8E-23 T 22-04-2016 IPR001623 DnaJ domain RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 PANTHER PTHR24078:SF190 96 285 4.5E-55 T 22-04-2016 RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 PANTHER PTHR24078:SF190 2 69 4.5E-55 T 22-04-2016 RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 Gene3D G3DSA:2.60.260.20 208 285 2.4E-15 T 22-04-2016 RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 Gene3D G3DSA:2.60.260.20 126 206 6.1E-11 T 22-04-2016 RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 PANTHER PTHR24078 96 285 4.5E-55 T 22-04-2016 RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 PANTHER PTHR24078 2 69 4.5E-55 T 22-04-2016 RM11_RS01785 30ce11d8c34a72a1cb296bccbde69cc1 300 SUPERFAMILY SSF49493 211 285 2.75E-14 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 274 363 1.9E-16 T 22-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 Gene3D G3DSA:3.40.710.10 23 272 1.4E-70 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 PANTHER PTHR21581 27 387 7.9E-73 T 22-04-2016 RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 SUPERFAMILY SSF56601 5 272 6.36E-60 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 25 249 1.0E-58 T 22-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 PANTHER PTHR21581:SF3 27 387 7.9E-73 T 22-04-2016 RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 SUPERFAMILY SSF69189 274 366 4.9E-17 T 22-04-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 56 67 2.1E-15 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 114 131 2.1E-15 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 154 2.1E-15 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 SMART SM00936 274 364 2.7E-20 T 22-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS03090 9afffb8d34ca0a3154c09eb6d7238452 387 Gene3D G3DSA:2.60.410.10 274 363 2.8E-16 T 22-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 PRINTS PR00062 Ribosomal protein L20 signature 42 71 3.6E-34 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 PRINTS PR00062 Ribosomal protein L20 signature 12 41 3.6E-34 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 PRINTS PR00062 Ribosomal protein L20 signature 75 101 3.6E-34 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 SUPERFAMILY SSF74731 3 117 5.36E-46 T 22-04-2016 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 28.074 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 PANTHER PTHR10986 2 118 1.6E-57 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 Pfam PF00453 Ribosomal protein L20 3 109 3.6E-46 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 Gene3D G3DSA:1.10.1900.20 55 117 4.3E-29 T 22-04-2016 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.7E-47 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 70 1.0E-21 T 22-04-2016 RM11_RS00385 6dc5b9f2ae014a9c2e0842024c1a93b6 133 PANTHER PTHR10986:SF12 2 118 1.6E-57 T 22-04-2016 RM11_RS02090 1e0c1570c1e39184511620d23eb430dc 201 Pfam PF02581 Thiamine monophosphate synthase/TENI 11 180 1.6E-47 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RM11_RS02090 1e0c1570c1e39184511620d23eb430dc 201 Gene3D G3DSA:3.20.20.70 6 199 8.4E-53 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS02090 1e0c1570c1e39184511620d23eb430dc 201 SUPERFAMILY SSF51391 4 198 3.79E-58 T 22-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RM11_RS02090 1e0c1570c1e39184511620d23eb430dc 201 PANTHER PTHR20857 1 201 1.0E-44 T 22-04-2016 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 SUPERFAMILY SSF55874 14 220 2.1E-70 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR01159 DNA gyrase subunit B signature 385 405 1.2E-70 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR01159 DNA gyrase subunit B signature 190 205 1.2E-70 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR01159 DNA gyrase subunit B signature 779 795 1.2E-70 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR01159 DNA gyrase subunit B signature 205 218 1.2E-70 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR01159 DNA gyrase subunit B signature 323 339 1.2E-70 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR01159 DNA gyrase subunit B signature 14 24 1.2E-70 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR01159 DNA gyrase subunit B signature 481 490 1.2E-70 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR01159 DNA gyrase subunit B signature 231 253 1.2E-70 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR01159 DNA gyrase subunit B signature 371 385 1.2E-70 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR01159 DNA gyrase subunit B signature 763 775 1.2E-70 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 Gene3D G3DSA:3.30.230.10 231 403 1.5E-71 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RM11_RS00195 d7a10fa81242285723d81af866343c34 810 SMART SM00387 40 185 5.2E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00195 d7a10fa81242285723d81af866343c34 810 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 41 181 7.7E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00195 d7a10fa81242285723d81af866343c34 810 SUPERFAMILY SSF56719 405 571 6.28E-84 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 SUPERFAMILY SSF56719 736 801 6.28E-84 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 738 799 1.2E-27 T 22-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 14 810 2.5E-299 T 22-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 Gene3D G3DSA:3.40.50.670 727 792 7.9E-93 T 22-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 Gene3D G3DSA:3.40.50.670 415 561 7.9E-93 T 22-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR00418 DNA topoisomerase II family signature 536 548 2.3E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR00418 DNA topoisomerase II family signature 742 758 2.3E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR00418 DNA topoisomerase II family signature 516 533 2.3E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR00418 DNA topoisomerase II family signature 498 514 2.3E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR00418 DNA topoisomerase II family signature 44 59 2.3E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR00418 DNA topoisomerase II family signature 431 445 2.3E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR00418 DNA topoisomerase II family signature 279 292 2.3E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR00418 DNA topoisomerase II family signature 79 92 2.3E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PRINTS PR00418 DNA topoisomerase II family signature 122 136 2.3E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 ProSitePatterns PS00177 DNA topoisomerase II signature. 433 441 - T 22-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 Pfam PF00204 DNA gyrase B 232 401 2.4E-57 T 22-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 Pfam PF01751 Toprim domain 430 542 4.8E-17 T 22-04-2016 IPR006171 Toprim domain RM11_RS00195 d7a10fa81242285723d81af866343c34 810 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 11 810 100.663 T 22-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 Gene3D G3DSA:3.30.565.10 14 223 1.2E-88 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS00195 d7a10fa81242285723d81af866343c34 810 SUPERFAMILY SSF54211 232 402 2.09E-59 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS00195 d7a10fa81242285723d81af866343c34 810 SMART SM00433 44 803 7.6E-262 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PANTHER PTHR10169 727 810 1.1E-294 T 22-04-2016 RM11_RS00195 d7a10fa81242285723d81af866343c34 810 PANTHER PTHR10169 1 564 1.1E-294 T 22-04-2016 RM11_RS00440 88662391f239e286c657b2b81bbec314 215 Gene3D G3DSA:3.40.50.300 2 206 1.7E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00440 88662391f239e286c657b2b81bbec314 215 Pfam PF02224 Cytidylate kinase 6 197 1.1E-53 T 22-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RM11_RS00440 88662391f239e286c657b2b81bbec314 215 TIGRFAM TIGR00017 cmk: cytidylate kinase 4 201 1.7E-52 T 22-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RM11_RS00440 88662391f239e286c657b2b81bbec314 215 Hamap MF_00238 Cytidylate kinase [cmk]. 4 209 28.025 T 22-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RM11_RS00440 88662391f239e286c657b2b81bbec314 215 PANTHER PTHR21299 5 195 3.1E-40 T 22-04-2016 RM11_RS00440 88662391f239e286c657b2b81bbec314 215 SUPERFAMILY SSF52540 2 208 1.23E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06345 d7f3549a2bc7c0e5758cdb248cad7c60 128 SUPERFAMILY SSF81343 13 124 2.62E-25 T 22-04-2016 RM11_RS06345 d7f3549a2bc7c0e5758cdb248cad7c60 128 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 7 113 8.8E-13 T 22-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RM11_RS06345 d7f3549a2bc7c0e5758cdb248cad7c60 128 Gene3D G3DSA:1.20.1300.10 11 123 4.5E-28 T 22-04-2016 RM11_RS06345 d7f3549a2bc7c0e5758cdb248cad7c60 128 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 18 122 6.1E-29 T 22-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 RM11_RS04230 50c3f8db4c497211ddc8d98b23229541 791 SUPERFAMILY SSF82861 548 632 1.7E-10 T 22-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RM11_RS04230 50c3f8db4c497211ddc8d98b23229541 791 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 663 697 - T 22-04-2016 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 RM11_RS04230 50c3f8db4c497211ddc8d98b23229541 791 PANTHER PTHR30347 373 788 1.1E-67 T 22-04-2016 RM11_RS04230 50c3f8db4c497211ddc8d98b23229541 791 Gene3D G3DSA:2.30.30.60 649 698 1.1E-17 T 22-04-2016 RM11_RS04230 50c3f8db4c497211ddc8d98b23229541 791 SUPERFAMILY SSF50182 633 699 4.58E-17 T 22-04-2016 IPR010920 LSM domain RM11_RS04230 50c3f8db4c497211ddc8d98b23229541 791 SUPERFAMILY SSF82689 704 788 5.36E-11 T 22-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RM11_RS04230 50c3f8db4c497211ddc8d98b23229541 791 Pfam PF00924 Mechanosensitive ion channel 591 787 1.1E-45 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RM11_RS04230 50c3f8db4c497211ddc8d98b23229541 791 PANTHER PTHR30347:SF3 373 788 1.1E-67 T 22-04-2016 RM11_RS04230 50c3f8db4c497211ddc8d98b23229541 791 Gene3D G3DSA:3.30.70.100 706 788 2.4E-10 T 22-04-2016 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 8 488 26.214 T 22-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 SUPERFAMILY SSF52954 378 480 2.29E-17 T 22-04-2016 IPR004154 Anticodon-binding RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 Pfam PF03129 Anticodon binding domain 380 456 6.0E-8 T 22-04-2016 IPR004154 Anticodon-binding RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 Gene3D G3DSA:3.40.50.800 378 489 1.0E-23 T 22-04-2016 IPR004154 Anticodon-binding RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 Gene3D G3DSA:3.30.930.10 9 206 2.3E-82 T 22-04-2016 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 Gene3D G3DSA:3.30.930.10 271 370 2.3E-82 T 22-04-2016 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 PIRSF PIRSF001549 6 470 2.1E-125 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 PANTHER PTHR11476 470 494 3.8E-158 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 PANTHER PTHR11476 6 451 3.8E-158 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 PANTHER PTHR11476:SF1 470 494 3.8E-158 T 22-04-2016 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 PANTHER PTHR11476:SF1 6 451 3.8E-158 T 22-04-2016 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 Pfam PF13393 Histidyl-tRNA synthetase 15 361 7.0E-45 T 22-04-2016 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 12 456 1.8E-120 T 22-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RM11_RS05335 4c128085f5d623cf982983f621d0127b 498 SUPERFAMILY SSF55681 10 369 5.18E-74 T 22-04-2016 RM11_RS00020 ab6e4b4b59849e133261bd2cd749878d 195 SUPERFAMILY SSF52540 1 191 2.08E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00020 ab6e4b4b59849e133261bd2cd749878d 195 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 185 2.7E-42 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RM11_RS00020 ab6e4b4b59849e133261bd2cd749878d 195 Gene3D G3DSA:3.40.50.300 1 194 6.1E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00020 ab6e4b4b59849e133261bd2cd749878d 195 PANTHER PTHR10695 1 195 2.2E-53 T 22-04-2016 RM11_RS00020 ab6e4b4b59849e133261bd2cd749878d 195 Pfam PF01121 Dephospho-CoA kinase 3 174 2.5E-40 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RM11_RS00020 ab6e4b4b59849e133261bd2cd749878d 195 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 195 24.564 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 PANTHER PTHR20852:SF15 2 139 1.4E-249 T 22-04-2016 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 PANTHER PTHR20852:SF15 161 469 1.4E-249 T 22-04-2016 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 PANTHER PTHR20852 2 139 1.4E-249 T 22-04-2016 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 PANTHER PTHR20852 161 469 1.4E-249 T 22-04-2016 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 SUPERFAMILY SSF54368 3 102 4.05E-35 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 22-04-2016 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 Pfam PF00120 Glutamine synthetase, catalytic domain 104 466 3.1E-138 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 SUPERFAMILY SSF55931 104 468 8.34E-135 T 22-04-2016 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 Gene3D G3DSA:3.10.20.70 4 106 2.0E-39 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 15 96 1.4E-31 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 51 69 - T 22-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 SMART SM01230 103 379 1.6E-146 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 6 468 4.0E-201 T 22-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS03955 eec07da9bad64cd99591fd08b6d16dc1 469 Gene3D G3DSA:3.30.590.10 107 456 1.2E-134 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RM11_RS04730 c2b277d8cbbb179149d6990f4d08240f 372 Gene3D G3DSA:3.90.1150.10 253 371 2.5E-34 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RM11_RS04730 c2b277d8cbbb179149d6990f4d08240f 372 PANTHER PTHR30244 1 372 1.3E-100 T 22-04-2016 RM11_RS04730 c2b277d8cbbb179149d6990f4d08240f 372 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 367 4.1E-102 T 22-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RM11_RS04730 c2b277d8cbbb179149d6990f4d08240f 372 PIRSF PIRSF000390 1 372 1.3E-94 T 22-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RM11_RS04730 c2b277d8cbbb179149d6990f4d08240f 372 SUPERFAMILY SSF53383 9 370 2.62E-102 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RM11_RS04730 c2b277d8cbbb179149d6990f4d08240f 372 PANTHER PTHR30244:SF15 1 372 1.3E-100 T 22-04-2016 RM11_RS04730 c2b277d8cbbb179149d6990f4d08240f 372 Gene3D G3DSA:3.40.640.10 10 248 7.6E-78 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RM11_RS04245 8ee28867e40cf61fe27c04038cc3f97f 584 PANTHER PTHR16254:SF17 424 565 1.2E-220 T 22-04-2016 RM11_RS04245 8ee28867e40cf61fe27c04038cc3f97f 584 PANTHER PTHR16254:SF17 1 405 1.2E-220 T 22-04-2016 RM11_RS04245 8ee28867e40cf61fe27c04038cc3f97f 584 SUPERFAMILY SSF51735 436 566 8.24E-22 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04245 8ee28867e40cf61fe27c04038cc3f97f 584 Gene3D G3DSA:3.40.50.720 432 565 1.6E-24 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04245 8ee28867e40cf61fe27c04038cc3f97f 584 Pfam PF00999 Sodium/hydrogen exchanger family 11 393 9.4E-76 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RM11_RS04245 8ee28867e40cf61fe27c04038cc3f97f 584 PANTHER PTHR16254 424 565 1.2E-220 T 22-04-2016 RM11_RS04245 8ee28867e40cf61fe27c04038cc3f97f 584 PANTHER PTHR16254 1 405 1.2E-220 T 22-04-2016 RM11_RS04245 8ee28867e40cf61fe27c04038cc3f97f 584 Pfam PF02254 TrkA-N domain 438 552 1.1E-15 T 22-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RM11_RS02830 4474db2c64241570fe8ef32a5b08dfa4 394 PIRSF PIRSF033909 12 365 1.4E-76 T 22-04-2016 IPR014586 Uncharacterised conserved protein UCP033909 RM11_RS02830 4474db2c64241570fe8ef32a5b08dfa4 394 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 127 342 1.9E-55 T 22-04-2016 IPR010297 Protein of unknown function DUF900, hydrolase-like RM11_RS02830 4474db2c64241570fe8ef32a5b08dfa4 394 SUPERFAMILY SSF53474 98 273 2.1E-11 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS02830 4474db2c64241570fe8ef32a5b08dfa4 394 Gene3D G3DSA:3.40.50.1820 144 340 2.7E-13 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS00800 47f06a9bbfbf7626bf069b881a814039 418 Pfam PF13406 Transglycosylase SLT domain 46 338 6.4E-95 T 22-04-2016 IPR031304 Transglycosylase SLT domain 2 RM11_RS00800 47f06a9bbfbf7626bf069b881a814039 418 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 45 343 4.7E-107 T 22-04-2016 IPR011970 Lytic murein transglycosylase RM11_RS00800 47f06a9bbfbf7626bf069b881a814039 418 SUPERFAMILY SSF47090 347 416 2.75E-15 T 22-04-2016 IPR002477 Peptidoglycan binding-like RM11_RS00800 47f06a9bbfbf7626bf069b881a814039 418 Gene3D G3DSA:1.10.530.10 233 344 5.8E-51 T 22-04-2016 RM11_RS00800 47f06a9bbfbf7626bf069b881a814039 418 Gene3D G3DSA:1.10.530.10 90 147 5.8E-51 T 22-04-2016 RM11_RS00800 47f06a9bbfbf7626bf069b881a814039 418 Gene3D G3DSA:1.10.101.10 363 415 1.3E-10 T 22-04-2016 IPR002477 Peptidoglycan binding-like RM11_RS00800 47f06a9bbfbf7626bf069b881a814039 418 Pfam PF01471 Putative peptidoglycan binding domain 362 413 7.6E-12 T 22-04-2016 IPR002477 Peptidoglycan binding-like RM11_RS00800 47f06a9bbfbf7626bf069b881a814039 418 SUPERFAMILY SSF53955 30 345 3.75E-92 T 22-04-2016 IPR023346 Lysozyme-like domain RM11_RS02180 c29ee02cfc88dd8e40fd210267bc07d8 192 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 27 182 3.4E-35 T 22-04-2016 IPR018639 Domain of unknown function DUF2062 RM11_RS02180 c29ee02cfc88dd8e40fd210267bc07d8 192 PANTHER PTHR40547 5 190 1.6E-16 T 22-04-2016 RM11_RS02180 c29ee02cfc88dd8e40fd210267bc07d8 192 PANTHER PTHR40547:SF1 5 190 1.6E-16 T 22-04-2016 RM11_RS04155 d2a781c18774ab89b75aae5e67cea37f 260 SUPERFAMILY SSF56219 1 258 3.93E-78 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RM11_RS04155 d2a781c18774ab89b75aae5e67cea37f 260 Gene3D G3DSA:3.60.10.10 1 258 6.5E-76 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RM11_RS04155 d2a781c18774ab89b75aae5e67cea37f 260 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 214 225 - T 22-04-2016 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RM11_RS04155 d2a781c18774ab89b75aae5e67cea37f 260 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 22-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RM11_RS04155 d2a781c18774ab89b75aae5e67cea37f 260 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 256 1.3E-74 T 22-04-2016 RM11_RS04155 d2a781c18774ab89b75aae5e67cea37f 260 PANTHER PTHR22748 1 258 6.9E-113 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RM11_RS04155 d2a781c18774ab89b75aae5e67cea37f 260 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 258 5.1E-73 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RM11_RS04155 d2a781c18774ab89b75aae5e67cea37f 260 PANTHER PTHR22748:SF9 1 258 6.9E-113 T 22-04-2016 RM11_RS04155 d2a781c18774ab89b75aae5e67cea37f 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 250 1.5E-26 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 26 344 2.3E-116 T 22-04-2016 IPR014155 Type IV secretion system protein VirB11 GO:0005737|GO:0006810|GO:0009405 RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 Pfam PF00437 Type II/IV secretion system protein 20 333 1.5E-96 T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 PANTHER PTHR30258:SF12 168 328 1.5E-49 T 22-04-2016 RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 PANTHER PTHR30258:SF12 20 134 1.5E-49 T 22-04-2016 RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 SUPERFAMILY SSF52540 15 135 1.35E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 SUPERFAMILY SSF52540 164 334 1.35E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 PANTHER PTHR30258 168 328 1.5E-49 T 22-04-2016 RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 PANTHER PTHR30258 20 134 1.5E-49 T 22-04-2016 RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 Gene3D G3DSA:3.30.450.90 18 116 3.6E-31 T 22-04-2016 RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 Gene3D G3DSA:3.40.50.300 164 334 5.1E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05240 b7d1f427f8e4f60085d2143355583312 356 SMART SM00382 179 334 2.3E-4 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 PANTHER PTHR30001:SF1 166 578 5.8E-242 T 22-04-2016 RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 PANTHER PTHR30001:SF1 1 126 5.8E-242 T 22-04-2016 RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 520 8.6E-155 T 22-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 SUPERFAMILY SSF50249 176 220 5.97E-16 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 SUPERFAMILY SSF50249 40 81 5.97E-16 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 Gene3D G3DSA:2.40.50.140 31 83 1.6E-40 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 Gene3D G3DSA:2.40.50.140 178 220 1.6E-40 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 Pfam PF10150 Ribonuclease E/G family 216 487 9.3E-94 T 22-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 PANTHER PTHR30001 166 578 5.8E-242 T 22-04-2016 RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 PANTHER PTHR30001 1 126 5.8E-242 T 22-04-2016 RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 Pfam PF00575 S1 RNA binding domain 39 82 1.3E-4 T 22-04-2016 IPR003029 S1 domain GO:0003676 RM11_RS02980 938a6abe0d962ce376b67473ff1408e6 876 Hamap MF_00970 Ribonuclease E [rne]. 2 871 28.68 T 22-04-2016 IPR028878 Ribonuclease E GO:0006396|GO:0008995 RM11_RS01520 c6fbb16d916088f7947b54c969769392 85 PRINTS PR00160 Glutaredoxin signature 45 58 1.7E-15 T 22-04-2016 IPR014025 Glutaredoxin subgroup RM11_RS01520 c6fbb16d916088f7947b54c969769392 85 PRINTS PR00160 Glutaredoxin signature 59 72 1.7E-15 T 22-04-2016 IPR014025 Glutaredoxin subgroup RM11_RS01520 c6fbb16d916088f7947b54c969769392 85 PRINTS PR00160 Glutaredoxin signature 4 22 1.7E-15 T 22-04-2016 IPR014025 Glutaredoxin subgroup RM11_RS01520 c6fbb16d916088f7947b54c969769392 85 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 81 6.6E-33 T 22-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 RM11_RS01520 c6fbb16d916088f7947b54c969769392 85 SUPERFAMILY SSF52833 1 83 4.5E-26 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS01520 c6fbb16d916088f7947b54c969769392 85 Gene3D G3DSA:3.40.30.10 3 77 3.2E-26 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS01520 c6fbb16d916088f7947b54c969769392 85 Pfam PF00462 Glutaredoxin 4 62 1.3E-19 T 22-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RM11_RS01520 c6fbb16d916088f7947b54c969769392 85 PANTHER PTHR10168 4 82 6.7E-20 T 22-04-2016 RM11_RS01520 c6fbb16d916088f7947b54c969769392 85 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 22-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 RM11_RS03200 c06a21b5a751e885600b1d12da150949 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 95 1.0E-27 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RM11_RS03200 c06a21b5a751e885600b1d12da150949 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 90 6.7E-21 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RM11_RS03200 c06a21b5a751e885600b1d12da150949 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 23.146 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RM11_RS03200 c06a21b5a751e885600b1d12da150949 95 PANTHER PTHR15004 1 95 2.4E-25 T 22-04-2016 RM11_RS03200 c06a21b5a751e885600b1d12da150949 95 PANTHER PTHR15004:SF0 1 95 2.4E-25 T 22-04-2016 RM11_RS03200 c06a21b5a751e885600b1d12da150949 95 SUPERFAMILY SSF141000 2 93 7.85E-29 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 PANTHER PTHR19211 6 542 1.8E-145 T 22-04-2016 RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 Pfam PF00005 ABC transporter 21 148 2.6E-24 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 Pfam PF00005 ABC transporter 299 432 5.9E-22 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 Gene3D G3DSA:3.40.50.300 284 523 2.3E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 Gene3D G3DSA:3.40.50.300 8 228 1.0E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 Pfam PF16326 ABC transporter C-terminal domain 532 600 2.7E-14 T 22-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 SUPERFAMILY SSF52540 263 492 5.48E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 SMART SM00382 30 193 7.6E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 SMART SM00382 307 476 4.2E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06015 f2df2fdab088509bd9968ba6ae4f2630 613 SUPERFAMILY SSF52540 5 197 2.03E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00930 45952a95b779a7668d5851150ff80d94 412 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 20 412 3.4E-121 T 22-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RM11_RS00930 45952a95b779a7668d5851150ff80d94 412 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 26 410 0.0 T 22-04-2016 RM11_RS00930 45952a95b779a7668d5851150ff80d94 412 PANTHER PTHR23100:SF0 21 412 8.3E-171 T 22-04-2016 RM11_RS00930 45952a95b779a7668d5851150ff80d94 412 SUPERFAMILY SSF56266 20 409 2.22E-138 T 22-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RM11_RS00930 45952a95b779a7668d5851150ff80d94 412 PANTHER PTHR23100 21 412 8.3E-171 T 22-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RM11_RS00930 45952a95b779a7668d5851150ff80d94 412 Gene3D G3DSA:3.60.70.12 16 284 3.2E-95 T 22-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RM11_RS00930 45952a95b779a7668d5851150ff80d94 412 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 412 146.994 T 22-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RM11_RS00930 45952a95b779a7668d5851150ff80d94 412 Pfam PF01960 ArgJ family 24 412 2.5E-141 T 22-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 SUPERFAMILY SSF46626 68 172 9.73E-29 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 Pfam PF00034 Cytochrome c 72 169 1.9E-7 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 Gene3D G3DSA:1.10.760.10 68 171 1.3E-31 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 PANTHER PTHR11961:SF6 1 179 3.5E-25 T 22-04-2016 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 PANTHER PTHR11961 1 179 3.5E-25 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 PRINTS PR00604 Class IA and IB cytochrome C signature 109 119 1.1E-11 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 PRINTS PR00604 Class IA and IB cytochrome C signature 93 108 1.1E-11 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 PRINTS PR00604 Class IA and IB cytochrome C signature 124 140 1.1E-11 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 PRINTS PR00604 Class IA and IB cytochrome C signature 80 87 1.1E-11 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 PRINTS PR00604 Class IA and IB cytochrome C signature 143 153 1.1E-11 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RM11_RS01105 58d41df4a75e2ec2cf616c68859bb5d0 179 PRINTS PR00604 Class IA and IB cytochrome C signature 160 168 1.1E-11 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RM11_RS03460 4b928e991b5c24973b326488cdcea293 395 Pfam PF02684 Lipid-A-disaccharide synthetase 8 368 1.6E-75 T 22-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RM11_RS03460 4b928e991b5c24973b326488cdcea293 395 PANTHER PTHR30372 6 367 2.6E-73 T 22-04-2016 RM11_RS03460 4b928e991b5c24973b326488cdcea293 395 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 7 369 3.5E-61 T 22-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RM11_RS03460 4b928e991b5c24973b326488cdcea293 395 SUPERFAMILY SSF53756 7 297 3.03E-21 T 22-04-2016 RM11_RS03460 4b928e991b5c24973b326488cdcea293 395 PANTHER PTHR30372:SF0 6 367 2.6E-73 T 22-04-2016 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 SMART SM00357 55 121 5.8E-17 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 163 366 5.7E-23 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 SUPERFAMILY SSF68912 4 48 1.37E-10 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 SUPERFAMILY SSF50249 51 128 1.66E-26 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 Gene3D G3DSA:3.40.50.300 134 419 2.0E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 TIGRFAM TIGR00767 rho: transcription termination factor Rho 5 420 3.0E-210 T 22-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 421 241.36 T 22-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 PANTHER PTHR15184:SF34 22 405 2.4E-187 T 22-04-2016 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 Pfam PF07497 Rho termination factor, RNA-binding domain 55 128 1.1E-28 T 22-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 Pfam PF07498 Rho termination factor, N-terminal domain 8 49 9.3E-16 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 SUPERFAMILY SSF52540 93 374 1.68E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 SMART SM00382 173 358 1.8E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 Gene3D G3DSA:1.10.720.10 4 49 1.3E-20 T 22-04-2016 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 Gene3D G3DSA:2.40.50.140 52 120 6.9E-32 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 PANTHER PTHR15184 22 405 2.4E-187 T 22-04-2016 RM11_RS06775 61dfe49b6f8633aa156a87db1a1cbabf 421 SMART SM00959 8 50 2.4E-16 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Pfam PF03764 Elongation factor G, domain IV 482 599 6.7E-44 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Hamap MF_00054_B Elongation factor G [fusA]. 6 693 107.498 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 SUPERFAMILY SSF50447 268 407 1.54E-33 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Gene3D G3DSA:3.30.70.240 601 685 2.6E-32 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Gene3D G3DSA:2.40.30.10 308 408 2.3E-35 T 22-04-2016 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Gene3D G3DSA:3.30.230.10 487 600 2.6E-44 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Pfam PF14492 Elongation Factor G, domain II 407 481 1.2E-34 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 SMART SM00889 483 600 1.4E-65 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 SMART SM00838 602 689 1.1E-51 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Gene3D G3DSA:3.30.70.870 409 483 7.0E-39 T 22-04-2016 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 184 1.3E-36 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 SUPERFAMILY SSF54980 405 483 2.19E-24 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.4E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PRINTS PR00315 GTP-binding elongation factor signature 135 144 1.4E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.4E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PRINTS PR00315 GTP-binding elongation factor signature 83 93 1.4E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PRINTS PR00315 GTP-binding elongation factor signature 99 110 1.4E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Gene3D G3DSA:3.40.50.300 5 290 2.5E-99 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Pfam PF00679 Elongation factor G C-terminus 602 686 6.0E-30 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 SUPERFAMILY SSF52540 5 285 2.46E-104 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Pfam PF03144 Elongation factor Tu domain 2 327 394 3.4E-14 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 Pfam PF00009 Elongation factor Tu GTP binding domain 9 285 1.1E-67 T 22-04-2016 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 SUPERFAMILY SSF54211 482 600 9.86E-40 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 SUPERFAMILY SSF54980 605 691 1.29E-28 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PANTHER PTHR23115 258 286 0.0 T 22-04-2016 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PANTHER PTHR23115 1 182 0.0 T 22-04-2016 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PANTHER PTHR23115 306 693 0.0 T 22-04-2016 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PANTHER PTHR23115:SF66 258 286 0.0 T 22-04-2016 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PANTHER PTHR23115:SF66 1 182 0.0 T 22-04-2016 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 PANTHER PTHR23115:SF66 306 693 0.0 T 22-04-2016 RM11_RS04140 1e59f88bcb1a9ec12ab65d713cf58903 694 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 692 0.0 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RM11_RS02655 ed42f7655754ad4d265a7a0d1344b107 120 SMART SM00448 2 113 1.7E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS02655 ed42f7655754ad4d265a7a0d1344b107 120 Pfam PF00072 Response regulator receiver domain 4 113 2.3E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS02655 ed42f7655754ad4d265a7a0d1344b107 120 PANTHER PTHR26402 2 117 1.8E-29 T 22-04-2016 RM11_RS02655 ed42f7655754ad4d265a7a0d1344b107 120 SUPERFAMILY SSF52172 1 117 1.85E-30 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS02655 ed42f7655754ad4d265a7a0d1344b107 120 PANTHER PTHR26402:SF481 2 117 1.8E-29 T 22-04-2016 RM11_RS02655 ed42f7655754ad4d265a7a0d1344b107 120 Gene3D G3DSA:3.40.50.2300 1 117 1.4E-34 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 Gene3D G3DSA:3.50.50.60 140 328 2.9E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 3.9E-63 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 3.9E-63 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 3.9E-63 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 3.9E-63 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 3.9E-63 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 300 307 3.9E-63 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 3.9E-63 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.9E-63 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 257 271 3.9E-63 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PANTHER PTHR22912:SF106 3 452 1.2E-166 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 22-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 SUPERFAMILY SSF55424 336 450 3.95E-31 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 SUPERFAMILY SSF51905 218 359 1.3E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 SUPERFAMILY SSF51905 101 189 1.3E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 SUPERFAMILY SSF51905 4 56 1.3E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 TIGRFAM TIGR01424 gluta_reduc_2: glutathione-disulfide reductase 4 449 2.0E-187 T 22-04-2016 IPR006324 Glutathione-disulphide reductase GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 319 2.4E-61 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PANTHER PTHR22912 3 452 1.2E-166 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PIRSF PIRSF000350 2 449 2.0E-82 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 Gene3D G3DSA:3.30.390.30 329 450 3.4E-36 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 Gene3D G3DSA:3.50.50.60 5 139 1.1E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 341 448 2.3E-29 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 7.0E-30 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 272 7.0E-30 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 285 307 7.0E-30 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 7.0E-30 T 22-04-2016 RM11_RS03410 36926e7fdb75a73faa6a4e33b29745ee 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 7.0E-30 T 22-04-2016 RM11_RS03680 085fe1dc7736a760363a6311ec955f27 101 PANTHER PTHR12219 1 91 5.4E-29 T 22-04-2016 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 RM11_RS03680 085fe1dc7736a760363a6311ec955f27 101 Pfam PF04800 ETC complex I subunit conserved region 3 96 1.1E-30 T 22-04-2016 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 RM11_RS03680 085fe1dc7736a760363a6311ec955f27 101 PANTHER PTHR12219:SF18 1 91 5.4E-29 T 22-04-2016 RM11_RS03680 085fe1dc7736a760363a6311ec955f27 101 Gene3D G3DSA:3.30.160.190 1 78 4.0E-30 T 22-04-2016 RM11_RS06175 332af19d5ba06a21d4ae2222154b5368 406 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 68 273 1.8E-12 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RM11_RS06175 332af19d5ba06a21d4ae2222154b5368 406 PANTHER PTHR30572 41 396 7.0E-89 T 22-04-2016 RM11_RS06175 332af19d5ba06a21d4ae2222154b5368 406 PANTHER PTHR30572:SF3 41 396 7.0E-89 T 22-04-2016 RM11_RS06175 332af19d5ba06a21d4ae2222154b5368 406 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 276 3.7E-31 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RM11_RS06175 332af19d5ba06a21d4ae2222154b5368 406 SUPERFAMILY SSF111369 61 272 9.94E-24 T 22-04-2016 RM11_RS06175 332af19d5ba06a21d4ae2222154b5368 406 Gene3D G3DSA:2.40.50.100 70 102 4.5E-14 T 22-04-2016 RM11_RS06175 332af19d5ba06a21d4ae2222154b5368 406 Gene3D G3DSA:2.40.50.100 191 224 4.5E-14 T 22-04-2016 RM11_RS00655 e90734ca1379b25d969aa39d5b5c5ed3 89 Gene3D G3DSA:2.40.50.100 20 83 2.0E-33 T 22-04-2016 RM11_RS00655 e90734ca1379b25d969aa39d5b5c5ed3 89 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 2.0E-18 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00655 e90734ca1379b25d969aa39d5b5c5ed3 89 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.4E-37 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00655 e90734ca1379b25d969aa39d5b5c5ed3 89 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.4E-37 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00655 e90734ca1379b25d969aa39d5b5c5ed3 89 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.4E-37 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00655 e90734ca1379b25d969aa39d5b5c5ed3 89 SUPERFAMILY SSF110324 2 82 1.22E-35 T 22-04-2016 RM11_RS00655 e90734ca1379b25d969aa39d5b5c5ed3 89 Pfam PF01016 Ribosomal L27 protein 2 81 9.2E-41 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00655 e90734ca1379b25d969aa39d5b5c5ed3 89 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 22-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00655 e90734ca1379b25d969aa39d5b5c5ed3 89 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 1.4E-39 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00655 e90734ca1379b25d969aa39d5b5c5ed3 89 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 29.179 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 Gene3D G3DSA:3.40.50.300 116 305 1.9E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 Gene3D G3DSA:1.20.120.140 35 115 1.6E-21 T 22-04-2016 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 SUPERFAMILY SSF47364 5 81 5.76E-17 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 SMART SM00963 10 89 2.0E-13 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 Pfam PF00448 SRP54-type protein, GTPase domain 104 303 1.6E-72 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 PANTHER PTHR11564:SF16 1 303 2.8E-111 T 22-04-2016 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 Pfam PF02881 SRP54-type protein, helical bundle domain 20 83 9.3E-8 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 34 303 1.6E-96 T 22-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 SUPERFAMILY SSF52540 102 303 3.1E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 278 291 - T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 33 305 57.246 T 22-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 SMART SM00382 103 283 3.7E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 SMART SM00962 104 305 5.5E-108 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RM11_RS06735 6802bcd6b83d6fd20ebea30d8110ede0 308 PANTHER PTHR11564 1 303 2.8E-111 T 22-04-2016 RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 Gene3D G3DSA:3.40.50.300 15 157 3.5E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 Pfam PF12002 MgsA AAA+ ATPase C terminal 263 429 3.2E-68 T 22-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 SUPERFAMILY SSF48019 248 433 4.7E-76 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 SUPERFAMILY SSF52540 15 222 7.22E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 Gene3D G3DSA:1.20.272.10 244 342 9.3E-44 T 22-04-2016 RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 Pfam PF16193 AAA C-terminal domain 189 262 1.9E-20 T 22-04-2016 IPR032423 AAA ATPase, C-terminal domain RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 PANTHER PTHR13779 6 439 5.8E-179 T 22-04-2016 RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 Gene3D G3DSA:1.10.8.60 158 220 1.6E-6 T 22-04-2016 RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 PANTHER PTHR13779:SF7 6 439 5.8E-179 T 22-04-2016 RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 57 165 1.3E-13 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 SMART SM00382 53 171 5.8E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS03990 155ee4cff700ef8e5e32bd3fc7a861af 439 Gene3D G3DSA:1.10.3710.10 343 438 2.1E-32 T 22-04-2016 RM11_RS02490 04300363f7a1e0912e39e1bc418a624d 151 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 5.7E-10 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RM11_RS02490 04300363f7a1e0912e39e1bc418a624d 151 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 5.7E-10 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RM11_RS02490 04300363f7a1e0912e39e1bc418a624d 151 PANTHER PTHR34182 2 121 4.1E-18 T 22-04-2016 RM11_RS02490 04300363f7a1e0912e39e1bc418a624d 151 Pfam PF03840 Preprotein translocase SecG subunit 4 68 5.1E-16 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RM11_RS02490 04300363f7a1e0912e39e1bc418a624d 151 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 69 4.4E-18 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 SMART SM00729 165 380 1.6E-56 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 15 456 71.995 T 22-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 Pfam PF04055 Radical SAM superfamily 170 343 5.4E-30 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 Gene3D G3DSA:3.80.30.20 164 395 7.7E-73 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 Pfam PF00919 Uncharacterized protein family UPF0004 16 118 4.8E-30 T 22-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 SUPERFAMILY SSF102114 147 390 3.4E-58 T 22-04-2016 RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 16 453 4.6E-142 T 22-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 PANTHER PTHR11918 15 455 3.9E-167 T 22-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 169 189 - T 22-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 PANTHER PTHR11918:SF43 15 455 3.9E-167 T 22-04-2016 RM11_RS01055 1e5062f0c95a8121212cb3dfe6937045 458 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 16 455 5.8E-148 T 22-04-2016 RM11_RS01425 573d23c5e160cdc1ae0bffd7ef95bcee 137 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 133 6.2E-45 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RM11_RS01425 573d23c5e160cdc1ae0bffd7ef95bcee 137 SUPERFAMILY SSF81330 10 130 2.22E-35 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RM11_RS01425 573d23c5e160cdc1ae0bffd7ef95bcee 137 PANTHER PTHR30266:SF2 1 137 7.8E-47 T 22-04-2016 RM11_RS01425 573d23c5e160cdc1ae0bffd7ef95bcee 137 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 22-04-2016 IPR019823 Large-conductance mechanosensitive channel, conserved site RM11_RS01425 573d23c5e160cdc1ae0bffd7ef95bcee 137 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 137 27.608 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RM11_RS01425 573d23c5e160cdc1ae0bffd7ef95bcee 137 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 135 4.0E-41 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RM11_RS01425 573d23c5e160cdc1ae0bffd7ef95bcee 137 PANTHER PTHR30266 1 137 7.8E-47 T 22-04-2016 RM11_RS01425 573d23c5e160cdc1ae0bffd7ef95bcee 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 7.0E-11 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RM11_RS01425 573d23c5e160cdc1ae0bffd7ef95bcee 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 97 106 7.0E-11 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RM11_RS01425 573d23c5e160cdc1ae0bffd7ef95bcee 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 88 96 7.0E-11 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RM11_RS01465 104def838bd2271b0b9bd28a3a57d35c 81 PANTHER PTHR21000:SF9 1 69 6.0E-23 T 22-04-2016 RM11_RS01465 104def838bd2271b0b9bd28a3a57d35c 81 Pfam PF00920 Dehydratase family 1 71 1.5E-13 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS01465 104def838bd2271b0b9bd28a3a57d35c 81 PANTHER PTHR21000 1 69 6.0E-23 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS01465 104def838bd2271b0b9bd28a3a57d35c 81 SUPERFAMILY SSF143975 1 77 2.35E-19 T 22-04-2016 RM11_RS00860 9e462618047bf6eae9d825e6f1382a58 294 SUPERFAMILY SSF161098 56 283 2.75E-50 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS00860 9e462618047bf6eae9d825e6f1382a58 294 PANTHER PTHR32243 5 293 2.0E-92 T 22-04-2016 RM11_RS00860 9e462618047bf6eae9d825e6f1382a58 294 Gene3D G3DSA:1.10.3720.10 9 285 1.5E-51 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS00860 9e462618047bf6eae9d825e6f1382a58 294 PANTHER PTHR32243:SF13 5 293 2.0E-92 T 22-04-2016 RM11_RS00860 9e462618047bf6eae9d825e6f1382a58 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 292 1.1E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 13 303 1.3E-141 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 SUPERFAMILY SSF55681 12 303 5.63E-124 T 22-04-2016 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 Gene3D G3DSA:1.20.58.180 220 305 9.1E-30 T 22-04-2016 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 11 306 57.308 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 65 80 1.8E-53 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 86 106 1.8E-53 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 143 163 1.8E-53 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 166 181 1.8E-53 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 117 141 1.8E-53 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 Gene3D G3DSA:3.30.930.10 9 218 4.7E-100 T 22-04-2016 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 12 305 1.4E-136 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RM11_RS01590 fc8d029ba13c50adec653ad8b30ef18e 314 PANTHER PTHR30075 10 303 7.1E-204 T 22-04-2016 RM11_RS05550 29620c5fd0af891f4cba4d0cfa003d88 227 Hamap MF_00528 Septum formation protein Maf [maf]. 18 218 29.957 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RM11_RS05550 29620c5fd0af891f4cba4d0cfa003d88 227 PIRSF PIRSF006305 11 219 2.6E-48 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RM11_RS05550 29620c5fd0af891f4cba4d0cfa003d88 227 SUPERFAMILY SSF52972 16 212 5.1E-54 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RM11_RS05550 29620c5fd0af891f4cba4d0cfa003d88 227 TIGRFAM TIGR00172 maf: septum formation protein Maf 18 211 2.9E-43 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RM11_RS05550 29620c5fd0af891f4cba4d0cfa003d88 227 Gene3D G3DSA:3.90.950.10 17 215 3.2E-61 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RM11_RS05550 29620c5fd0af891f4cba4d0cfa003d88 227 Pfam PF02545 Maf-like protein 18 212 3.2E-51 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RM11_RS00450 7d8631e627e494ef4e3c3805384e936e 126 TIGRFAM TIGR02300 FYDLN_acid: TIGR02300 family protein 1 121 6.2E-29 T 22-04-2016 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid RM11_RS00450 7d8631e627e494ef4e3c3805384e936e 126 Pfam PF09538 Protein of unknown function (FYDLN_acid) 1 105 4.5E-21 T 22-04-2016 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid RM11_RS01290 56facbc5500ed6cd49704179becbe2f4 383 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 22-04-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 RM11_RS01290 56facbc5500ed6cd49704179becbe2f4 383 Gene3D G3DSA:3.20.20.70 5 376 3.2E-127 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS01290 56facbc5500ed6cd49704179becbe2f4 383 PANTHER PTHR10578 8 375 4.9E-148 T 22-04-2016 RM11_RS01290 56facbc5500ed6cd49704179becbe2f4 383 PANTHER PTHR10578:SF65 8 375 4.9E-148 T 22-04-2016 RM11_RS01290 56facbc5500ed6cd49704179becbe2f4 383 PIRSF PIRSF000138 1 380 9.3E-119 T 22-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 RM11_RS01290 56facbc5500ed6cd49704179becbe2f4 383 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 74.941 T 22-04-2016 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 RM11_RS01290 56facbc5500ed6cd49704179becbe2f4 383 Pfam PF01070 FMN-dependent dehydrogenase 13 375 8.7E-121 T 22-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RM11_RS01290 56facbc5500ed6cd49704179becbe2f4 383 SUPERFAMILY SSF51395 5 373 2.81E-94 T 22-04-2016 RM11_RS04950 588cabfe34168504dd910a7929e0df37 130 Gene3D G3DSA:1.10.10.10 4 62 1.9E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS04950 588cabfe34168504dd910a7929e0df37 130 Pfam PF01475 Ferric uptake regulator family 4 119 2.4E-7 T 22-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RM11_RS04950 588cabfe34168504dd910a7929e0df37 130 PANTHER PTHR33202:SF6 4 130 1.0E-23 T 22-04-2016 RM11_RS04950 588cabfe34168504dd910a7929e0df37 130 PANTHER PTHR33202 4 130 1.0E-23 T 22-04-2016 RM11_RS04950 588cabfe34168504dd910a7929e0df37 130 SUPERFAMILY SSF46785 4 125 1.91E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS04455 4137c6ec7b9e40ea9da32a2cd25440be 580 PANTHER PTHR30627:SF1 19 575 5.0E-119 T 22-04-2016 RM11_RS04455 4137c6ec7b9e40ea9da32a2cd25440be 580 Pfam PF00905 Penicillin binding protein transpeptidase domain 247 534 1.6E-54 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RM11_RS04455 4137c6ec7b9e40ea9da32a2cd25440be 580 PANTHER PTHR30627 19 575 5.0E-119 T 22-04-2016 RM11_RS04455 4137c6ec7b9e40ea9da32a2cd25440be 580 SUPERFAMILY SSF56601 221 553 2.47E-74 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS04455 4137c6ec7b9e40ea9da32a2cd25440be 580 Pfam PF03717 Penicillin-binding Protein dimerisation domain 76 186 2.9E-11 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RM11_RS04455 4137c6ec7b9e40ea9da32a2cd25440be 580 Gene3D G3DSA:3.40.710.10 221 548 8.7E-72 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS04455 4137c6ec7b9e40ea9da32a2cd25440be 580 Gene3D G3DSA:3.90.1310.10 143 198 8.7E-13 T 22-04-2016 RM11_RS04455 4137c6ec7b9e40ea9da32a2cd25440be 580 SUPERFAMILY SSF56519 75 198 1.7E-34 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 SMART SM00869 1640 1900 1.5E-24 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 SUPERFAMILY SSF51126 269 307 8.79E-12 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 SUPERFAMILY SSF51126 367 706 8.79E-12 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 Gene3D G3DSA:2.160.20.20 405 704 1.5E-18 T 22-04-2016 IPR012332 P22 tailspike C-terminal domain-like RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 Gene3D G3DSA:2.160.20.20 166 355 1.5E-18 T 22-04-2016 IPR012332 P22 tailspike C-terminal domain-like RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 Gene3D G3DSA:2.160.20.20 1007 1540 1.4E-21 T 22-04-2016 IPR012332 P22 tailspike C-terminal domain-like RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 Gene3D G3DSA:2.40.128.130 1595 1913 2.8E-36 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 607 703 3.2E-4 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 1443 1913 5.4E-28 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 SUPERFAMILY SSF51126 1068 1264 6.12E-13 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 SUPERFAMILY SSF51126 1322 1538 6.12E-13 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor RM11_RS05095 d8311d742b0d25921b87d05d502129d5 1913 SUPERFAMILY SSF103515 1614 1913 2.62E-37 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 Gene3D G3DSA:3.40.50.620 3 67 3.9E-49 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 Gene3D G3DSA:3.40.50.620 182 231 3.9E-49 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 305 8.9E-94 T 22-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 PANTHER PTHR11451:SF41 3 319 8.1E-91 T 22-04-2016 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 SUPERFAMILY SSF52374 3 299 1.56E-108 T 22-04-2016 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 Gene3D G3DSA:1.10.1160.10 234 314 5.6E-31 T 22-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 PANTHER PTHR11451 3 319 8.1E-91 T 22-04-2016 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 Gene3D G3DSA:1.10.10.350 374 469 2.8E-26 T 22-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 Gene3D G3DSA:3.90.800.10 68 181 2.9E-35 T 22-04-2016 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 4.5E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 PRINTS PR00987 Glutamyl-tRNA synthetase signature 180 190 4.5E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 PRINTS PR00987 Glutamyl-tRNA synthetase signature 196 204 4.5E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 4.5E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 4.5E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 3 470 32.481 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 SUPERFAMILY SSF48163 300 468 1.7E-34 T 22-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RM11_RS03430 9183c172d84a8a48e94c1805a5dc3062 475 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 471 1.8E-154 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RM11_RS03970 c1d2edef1cc2ab2ff9e0c7d50aa51e07 327 Pfam PF00849 RNA pseudouridylate synthase 102 254 2.9E-36 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS03970 c1d2edef1cc2ab2ff9e0c7d50aa51e07 327 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 12 316 5.3E-61 T 22-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS03970 c1d2edef1cc2ab2ff9e0c7d50aa51e07 327 PANTHER PTHR11079 8 327 9.6E-73 T 22-04-2016 RM11_RS03970 c1d2edef1cc2ab2ff9e0c7d50aa51e07 327 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 141 155 - T 22-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS03970 c1d2edef1cc2ab2ff9e0c7d50aa51e07 327 SUPERFAMILY SSF55120 89 322 5.44E-59 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS03970 c1d2edef1cc2ab2ff9e0c7d50aa51e07 327 SUPERFAMILY SSF55174 15 66 3.36E-7 T 22-04-2016 RM11_RS03970 c1d2edef1cc2ab2ff9e0c7d50aa51e07 327 PANTHER PTHR11079:SF74 8 327 9.6E-73 T 22-04-2016 RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 PRINTS PR00050 Cold shock protein signature 141 150 6.6E-8 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 PRINTS PR00050 Cold shock protein signature 156 174 6.6E-8 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 PRINTS PR00050 Cold shock protein signature 120 135 6.6E-8 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 SUPERFAMILY SSF50249 118 181 2.1E-15 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 PANTHER PTHR11544 22 187 7.8E-62 T 22-04-2016 RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 Pfam PF00313 'Cold-shock' DNA-binding domain 27 90 1.1E-9 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 Pfam PF00313 'Cold-shock' DNA-binding domain 119 180 2.6E-14 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 PANTHER PTHR11544:SF43 22 187 7.8E-62 T 22-04-2016 RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 Gene3D G3DSA:2.40.50.140 121 180 1.8E-18 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 Gene3D G3DSA:2.40.50.140 27 90 6.1E-16 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 SUPERFAMILY SSF50249 26 92 8.57E-13 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 SMART SM00357 119 183 2.4E-10 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 RM11_RS03165 21409166332fa0373782e8c6d79c74b3 191 SMART SM00357 27 92 3.3E-6 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 RM11_RS01510 24c70dfe7ba69a6b8fd6ac415d600f85 269 SUPERFAMILY SSF53335 96 218 4.0E-14 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01510 24c70dfe7ba69a6b8fd6ac415d600f85 269 Pfam PF13489 Methyltransferase domain 73 189 1.8E-8 T 22-04-2016 RM11_RS01510 24c70dfe7ba69a6b8fd6ac415d600f85 269 Gene3D G3DSA:3.40.50.150 88 265 4.3E-20 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01190 7ec3a547dcda25ce55d9f4bd06493e2d 277 SUPERFAMILY SSF56925 43 120 3.92E-29 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS01190 7ec3a547dcda25ce55d9f4bd06493e2d 277 SUPERFAMILY SSF56925 158 277 3.92E-29 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS01190 7ec3a547dcda25ce55d9f4bd06493e2d 277 Pfam PF13505 Outer membrane protein beta-barrel domain 24 277 7.1E-18 T 22-04-2016 IPR027385 Outer membrane protein beta-barrel RM11_RS01190 7ec3a547dcda25ce55d9f4bd06493e2d 277 Gene3D G3DSA:2.40.160.20 43 121 2.5E-49 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS01190 7ec3a547dcda25ce55d9f4bd06493e2d 277 Gene3D G3DSA:2.40.160.20 164 277 2.5E-49 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS01190 7ec3a547dcda25ce55d9f4bd06493e2d 277 PANTHER PTHR34001 149 277 7.3E-28 T 22-04-2016 RM11_RS01190 7ec3a547dcda25ce55d9f4bd06493e2d 277 PANTHER PTHR34001 1 123 7.3E-28 T 22-04-2016 RM11_RS02290 0752715e64516cc85d28f30cf19b42ca 193 PANTHER PTHR21368 1 163 1.0E-47 T 22-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02290 0752715e64516cc85d28f30cf19b42ca 193 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 145 6.2E-23 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal RM11_RS02290 0752715e64516cc85d28f30cf19b42ca 193 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 145 1.3E-37 T 22-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02290 0752715e64516cc85d28f30cf19b42ca 193 SUPERFAMILY SSF55653 57 146 1.57E-25 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal RM11_RS02290 0752715e64516cc85d28f30cf19b42ca 193 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal RM11_RS02290 0752715e64516cc85d28f30cf19b42ca 193 Gene3D G3DSA:3.10.430.100 61 146 4.3E-26 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal RM11_RS02290 0752715e64516cc85d28f30cf19b42ca 193 SUPERFAMILY SSF55658 1 57 3.84E-18 T 22-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RM11_RS02290 0752715e64516cc85d28f30cf19b42ca 193 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 147 24.804 T 22-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02290 0752715e64516cc85d28f30cf19b42ca 193 Gene3D G3DSA:3.40.5.10 1 52 1.1E-24 T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal RM11_RS02290 0752715e64516cc85d28f30cf19b42ca 193 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 2.0E-21 T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal RM11_RS03690 3f237676ddec7546b1b8eb3501b1c8ec 229 Gene3D G3DSA:1.10.8.60 166 225 3.3E-8 T 22-04-2016 RM11_RS03690 3f237676ddec7546b1b8eb3501b1c8ec 229 SUPERFAMILY SSF52540 15 205 2.37E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03690 3f237676ddec7546b1b8eb3501b1c8ec 229 Gene3D G3DSA:3.40.50.300 3 156 9.4E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03690 3f237676ddec7546b1b8eb3501b1c8ec 229 PANTHER PTHR30050:SF5 4 228 2.6E-19 T 22-04-2016 RM11_RS03690 3f237676ddec7546b1b8eb3501b1c8ec 229 PANTHER PTHR30050 4 228 2.6E-19 T 22-04-2016 RM11_RS03795 5acf83fa86bfd13fed3ddcf0939a75e5 503 Gene3D G3DSA:3.30.420.40 14 135 2.4E-33 T 22-04-2016 RM11_RS03795 5acf83fa86bfd13fed3ddcf0939a75e5 503 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 16 306 3.3E-93 T 22-04-2016 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 RM11_RS03795 5acf83fa86bfd13fed3ddcf0939a75e5 503 SUPERFAMILY SSF53067 140 310 4.06E-34 T 22-04-2016 RM11_RS03795 5acf83fa86bfd13fed3ddcf0939a75e5 503 PANTHER PTHR30005:SF4 16 449 1.5E-70 T 22-04-2016 RM11_RS03795 5acf83fa86bfd13fed3ddcf0939a75e5 503 SUPERFAMILY SSF109604 331 474 3.45E-12 T 22-04-2016 RM11_RS03795 5acf83fa86bfd13fed3ddcf0939a75e5 503 PANTHER PTHR30005 16 449 1.5E-70 T 22-04-2016 RM11_RS03795 5acf83fa86bfd13fed3ddcf0939a75e5 503 Pfam PF02541 Ppx/GppA phosphatase family 37 309 2.0E-41 T 22-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 RM11_RS03795 5acf83fa86bfd13fed3ddcf0939a75e5 503 SUPERFAMILY SSF53067 15 135 2.69E-32 T 22-04-2016 RM11_RS03795 5acf83fa86bfd13fed3ddcf0939a75e5 503 Gene3D G3DSA:3.30.420.150 144 308 1.2E-24 T 22-04-2016 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 SUPERFAMILY SSF81336 85 245 3.92E-44 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 PANTHER PTHR11410:SF6 7 252 2.1E-92 T 22-04-2016 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 Gene3D G3DSA:1.20.120.220 84 249 9.2E-47 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 9 247 3.5E-64 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 ProSitePatterns PS00449 ATP synthase a subunit signature. 174 183 - T 22-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 PANTHER PTHR11410 7 252 2.1E-92 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 Hamap MF_01393 ATP synthase subunit a [atpB]. 10 251 15.376 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 Pfam PF00119 ATP synthase A chain 35 244 2.3E-49 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 PRINTS PR00123 ATP synthase A subunit signature 171 193 5.8E-30 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 PRINTS PR00123 ATP synthase A subunit signature 151 166 5.8E-30 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 PRINTS PR00123 ATP synthase A subunit signature 90 106 5.8E-30 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RM11_RS01565 7f0140f8540444e9ef7c3a6e927f3fe5 252 PRINTS PR00123 ATP synthase A subunit signature 231 246 5.8E-30 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RM11_RS06085 e95b67f96f017846eb18d0124a840450 142 Gene3D G3DSA:2.60.15.10 13 97 8.8E-19 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06085 e95b67f96f017846eb18d0124a840450 142 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 11 141 13.103 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06085 e95b67f96f017846eb18d0124a840450 142 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 15 90 2.9E-17 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06085 e95b67f96f017846eb18d0124a840450 142 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 18 89 4.0E-28 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06085 e95b67f96f017846eb18d0124a840450 142 SUPERFAMILY SSF51344 12 91 1.7E-16 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS06085 e95b67f96f017846eb18d0124a840450 142 PANTHER PTHR13822 15 120 7.7E-14 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RM11_RS03700 5d1e1c7ba28c2ef4406baf2744ba79ec 361 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 15 353 43.693 T 22-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03700 5d1e1c7ba28c2ef4406baf2744ba79ec 361 Pfam PF00586 AIR synthase related protein, N-terminal domain 70 171 4.7E-13 T 22-04-2016 IPR016188 PurM-like, N-terminal domain RM11_RS03700 5d1e1c7ba28c2ef4406baf2744ba79ec 361 PANTHER PTHR10520:SF10 12 349 1.5E-196 T 22-04-2016 RM11_RS03700 5d1e1c7ba28c2ef4406baf2744ba79ec 361 Gene3D G3DSA:3.30.1330.10 30 178 1.1E-57 T 22-04-2016 IPR016188 PurM-like, N-terminal domain RM11_RS03700 5d1e1c7ba28c2ef4406baf2744ba79ec 361 SUPERFAMILY SSF55326 15 177 4.19E-46 T 22-04-2016 RM11_RS03700 5d1e1c7ba28c2ef4406baf2744ba79ec 361 SUPERFAMILY SSF56042 182 351 8.22E-56 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RM11_RS03700 5d1e1c7ba28c2ef4406baf2744ba79ec 361 Pfam PF02769 AIR synthase related protein, C-terminal domain 186 353 9.7E-34 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RM11_RS03700 5d1e1c7ba28c2ef4406baf2744ba79ec 361 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 15 347 9.4E-131 T 22-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03700 5d1e1c7ba28c2ef4406baf2744ba79ec 361 Gene3D G3DSA:3.90.650.10 183 354 1.7E-63 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RM11_RS03700 5d1e1c7ba28c2ef4406baf2744ba79ec 361 PANTHER PTHR10520 12 349 1.5E-196 T 22-04-2016 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 Gene3D G3DSA:3.40.50.10490 25 101 1.3E-66 T 22-04-2016 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 Gene3D G3DSA:3.40.50.10490 159 230 1.3E-66 T 22-04-2016 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 SUPERFAMILY SSF52313 8 234 3.01E-92 T 22-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 7 225 3.6E-100 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 Pfam PF00318 Ribosomal protein S2 11 225 9.7E-95 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 159 183 - T 22-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 PRINTS PR00395 Ribosomal protein S2 signature 176 187 1.4E-38 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 PRINTS PR00395 Ribosomal protein S2 signature 159 176 1.4E-38 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 PRINTS PR00395 Ribosomal protein S2 signature 39 48 1.4E-38 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 PRINTS PR00395 Ribosomal protein S2 signature 197 211 1.4E-38 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 PRINTS PR00395 Ribosomal protein S2 signature 89 106 1.4E-38 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 PRINTS PR00395 Ribosomal protein S2 signature 8 26 1.4E-38 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 8 19 - T 22-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 Gene3D G3DSA:1.10.287.610 102 153 9.8E-21 T 22-04-2016 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 4 232 40.745 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RM11_RS03515 bf21ac368b6bb19e95a7f54c59cdea9b 257 PANTHER PTHR12534 5 228 5.2E-111 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RM11_RS00520 7c3e89498e88fe61c05213d946056232 259 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 50 233 6.3E-79 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00520 7c3e89498e88fe61c05213d946056232 259 PANTHER PTHR30071 15 229 1.8E-61 T 22-04-2016 RM11_RS00520 7c3e89498e88fe61c05213d946056232 259 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 67 87 1.5E-55 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00520 7c3e89498e88fe61c05213d946056232 259 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 126 146 1.5E-55 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00520 7c3e89498e88fe61c05213d946056232 259 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 50 67 1.5E-55 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00520 7c3e89498e88fe61c05213d946056232 259 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 161 187 1.5E-55 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00520 7c3e89498e88fe61c05213d946056232 259 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 209 233 1.5E-55 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00520 7c3e89498e88fe61c05213d946056232 259 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 105 125 1.5E-55 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00520 7c3e89498e88fe61c05213d946056232 259 Pfam PF01578 Cytochrome C assembly protein 22 189 9.2E-33 T 22-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RM11_RS02120 a0e7534ec930ff6b19fe4f975d1bc29f 365 PANTHER PTHR30472 14 364 3.4E-134 T 22-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RM11_RS02120 a0e7534ec930ff6b19fe4f975d1bc29f 365 Gene3D G3DSA:1.10.3470.10 26 360 1.3E-108 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS02120 a0e7534ec930ff6b19fe4f975d1bc29f 365 Pfam PF01032 FecCD transport family 36 357 2.1E-94 T 22-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RM11_RS02120 a0e7534ec930ff6b19fe4f975d1bc29f 365 SUPERFAMILY SSF81345 19 357 4.84E-83 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS02120 a0e7534ec930ff6b19fe4f975d1bc29f 365 PANTHER PTHR30472:SF3 14 364 3.4E-134 T 22-04-2016 RM11_RS03000 ea27f73d271941bcb4c612e55fc18137 160 PANTHER PTHR10681 7 150 3.8E-38 T 22-04-2016 RM11_RS03000 ea27f73d271941bcb4c612e55fc18137 160 SUPERFAMILY SSF52833 6 151 4.57E-46 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS03000 ea27f73d271941bcb4c612e55fc18137 160 Gene3D G3DSA:3.40.30.10 7 150 1.2E-44 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS03000 ea27f73d271941bcb4c612e55fc18137 160 Pfam PF00578 AhpC/TSA family 7 132 2.1E-33 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RM11_RS01545 525c8219af298838bd631d5ed5548cf9 590 Pfam PF02080 TrkA-C domain 219 286 2.8E-13 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS01545 525c8219af298838bd631d5ed5548cf9 590 Pfam PF03600 Citrate transporter 17 486 3.0E-29 T 22-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 RM11_RS01545 525c8219af298838bd631d5ed5548cf9 590 SUPERFAMILY SSF116726 303 385 8.5E-14 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS01545 525c8219af298838bd631d5ed5548cf9 590 Gene3D G3DSA:3.30.70.1450 305 388 4.9E-15 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS01545 525c8219af298838bd631d5ed5548cf9 590 Gene3D G3DSA:3.30.70.1450 217 293 4.3E-13 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS01545 525c8219af298838bd631d5ed5548cf9 590 SUPERFAMILY SSF116726 212 288 2.22E-14 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS06425 730ae3c6c0e96d7ddb402ab7b7b2469a 349 Gene3D G3DSA:3.30.2010.10 56 146 2.8E-33 T 22-04-2016 RM11_RS06425 730ae3c6c0e96d7ddb402ab7b7b2469a 349 Hamap MF_00188 Protease HtpX [htpX]. 3 280 28.19 T 22-04-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 RM11_RS06425 730ae3c6c0e96d7ddb402ab7b7b2469a 349 PANTHER PTHR10120 1 299 1.5E-107 T 22-04-2016 RM11_RS06425 730ae3c6c0e96d7ddb402ab7b7b2469a 349 PANTHER PTHR10120:SF19 1 299 1.5E-107 T 22-04-2016 RM11_RS06425 730ae3c6c0e96d7ddb402ab7b7b2469a 349 Pfam PF01435 Peptidase family M48 72 279 7.7E-37 T 22-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RM11_RS02760 4527ae6fd9fc365e1f194d801846a8de 206 PIRSF PIRSF000498 1 206 1.8E-71 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS02760 4527ae6fd9fc365e1f194d801846a8de 206 Gene3D G3DSA:2.40.30.20 110 205 1.8E-29 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS02760 4527ae6fd9fc365e1f194d801846a8de 206 Gene3D G3DSA:2.40.30.20 5 109 1.4E-28 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RM11_RS02760 4527ae6fd9fc365e1f194d801846a8de 206 SUPERFAMILY SSF63380 99 203 6.29E-31 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RM11_RS02760 4527ae6fd9fc365e1f194d801846a8de 206 PANTHER PTHR21098 1 198 2.5E-77 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS02760 4527ae6fd9fc365e1f194d801846a8de 206 SUPERFAMILY SSF63380 1 98 1.28E-22 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RM11_RS02760 4527ae6fd9fc365e1f194d801846a8de 206 Pfam PF00677 Lumazine binding domain 105 189 4.9E-20 T 22-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS02760 4527ae6fd9fc365e1f194d801846a8de 206 Pfam PF00677 Lumazine binding domain 3 91 1.7E-17 T 22-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS02760 4527ae6fd9fc365e1f194d801846a8de 206 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 197 4.1E-55 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS06150 39ad0116cc685714764c5e0c701cde64 219 SMART SM00382 27 216 1.6E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06150 39ad0116cc685714764c5e0c701cde64 219 PANTHER PTHR24220:SF470 3 215 4.6E-96 T 22-04-2016 RM11_RS06150 39ad0116cc685714764c5e0c701cde64 219 SUPERFAMILY SSF52540 1 216 6.21E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06150 39ad0116cc685714764c5e0c701cde64 219 PANTHER PTHR24220 3 215 4.6E-96 T 22-04-2016 RM11_RS06150 39ad0116cc685714764c5e0c701cde64 219 Pfam PF00005 ABC transporter 18 165 8.3E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS06150 39ad0116cc685714764c5e0c701cde64 219 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS06150 39ad0116cc685714764c5e0c701cde64 219 Gene3D G3DSA:3.40.50.300 1 216 8.7E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06150 39ad0116cc685714764c5e0c701cde64 219 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 3.9E-84 T 22-04-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 Pfam PF02357 Transcription termination factor nusG 4 107 2.7E-25 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 3.6E-16 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 3.6E-16 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 3.6E-16 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 3.6E-64 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 SMART SM00738 2 110 1.6E-44 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 SMART SM00739 122 149 4.3E-4 T 22-04-2016 IPR005824 KOW RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 SUPERFAMILY SSF82679 4 112 4.58E-37 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 PANTHER PTHR30265 4 176 1.7E-67 T 22-04-2016 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 ProSitePatterns PS01014 Transcription termination factor nusG signature. 159 168 - T 22-04-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 176 24.043 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 Gene3D G3DSA:2.30.30.30 115 176 6.9E-27 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 SUPERFAMILY SSF50104 121 176 3.69E-17 T 22-04-2016 IPR008991 Translation protein SH3-like domain RM11_RS03595 7517b1d95f4af31a590a63776b74eaea 176 Gene3D G3DSA:3.30.70.940 3 113 7.1E-41 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 RM11_RS00380 59b796f14b9155b3371f5761d6c44887 67 PANTHER PTHR33343 1 65 1.0E-18 T 22-04-2016 RM11_RS00380 59b796f14b9155b3371f5761d6c44887 67 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.492 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RM11_RS00380 59b796f14b9155b3371f5761d6c44887 67 Pfam PF01632 Ribosomal protein L35 2 58 1.3E-20 T 22-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00380 59b796f14b9155b3371f5761d6c44887 67 SUPERFAMILY SSF143034 2 60 2.09E-20 T 22-04-2016 RM11_RS00380 59b796f14b9155b3371f5761d6c44887 67 PRINTS PR00064 Ribosomal protein L35 signature 21 35 3.6E-10 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RM11_RS00380 59b796f14b9155b3371f5761d6c44887 67 PRINTS PR00064 Ribosomal protein L35 signature 36 54 3.6E-10 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RM11_RS00380 59b796f14b9155b3371f5761d6c44887 67 PRINTS PR00064 Ribosomal protein L35 signature 3 20 3.6E-10 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RM11_RS00380 59b796f14b9155b3371f5761d6c44887 67 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 22-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00380 59b796f14b9155b3371f5761d6c44887 67 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.7E-21 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RM11_RS04990 9cd2551e1d3e53221d7878ea52197f0a 276 SUPERFAMILY SSF63380 25 120 3.4E-23 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RM11_RS04990 9cd2551e1d3e53221d7878ea52197f0a 276 Gene3D G3DSA:2.40.30.10 25 114 2.8E-28 T 22-04-2016 RM11_RS04990 9cd2551e1d3e53221d7878ea52197f0a 276 Pfam PF00175 Oxidoreductase NAD-binding domain 133 248 6.7E-9 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RM11_RS04990 9cd2551e1d3e53221d7878ea52197f0a 276 PANTHER PTHR19370:SF98 29 260 1.6E-77 T 22-04-2016 RM11_RS04990 9cd2551e1d3e53221d7878ea52197f0a 276 PANTHER PTHR19370 29 260 1.6E-77 T 22-04-2016 RM11_RS04990 9cd2551e1d3e53221d7878ea52197f0a 276 Pfam PF00970 Oxidoreductase FAD-binding domain 37 112 7.9E-9 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain RM11_RS04990 9cd2551e1d3e53221d7878ea52197f0a 276 Gene3D G3DSA:3.40.50.80 118 275 3.5E-36 T 22-04-2016 RM11_RS04990 9cd2551e1d3e53221d7878ea52197f0a 276 SUPERFAMILY SSF52343 124 273 1.15E-31 T 22-04-2016 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 33.786 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 Gene3D G3DSA:3.30.70.141 1 139 2.2E-53 T 22-04-2016 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 SUPERFAMILY SSF54919 1 139 4.32E-54 T 22-04-2016 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 PANTHER PTHR11349 1 139 1.2E-60 T 22-04-2016 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 Pfam PF00334 Nucleoside diphosphate kinase 4 138 8.2E-52 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 4.6E-36 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 4.6E-36 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 4.6E-36 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 4.6E-36 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 4.6E-36 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS02410 62ca5035f1aa184f4a0c470fc791a5a5 140 SMART SM00562 3 140 6.8E-75 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RM11_RS00605 abead172b5eed2cde9f738790086759b 166 PANTHER PTHR33202 36 159 1.6E-44 T 22-04-2016 RM11_RS00605 abead172b5eed2cde9f738790086759b 166 SUPERFAMILY SSF46785 32 158 5.03E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS00605 abead172b5eed2cde9f738790086759b 166 Gene3D G3DSA:1.10.10.10 32 111 3.7E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS00605 abead172b5eed2cde9f738790086759b 166 Pfam PF01475 Ferric uptake regulator family 39 129 6.8E-19 T 22-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RM11_RS00605 abead172b5eed2cde9f738790086759b 166 PANTHER PTHR33202:SF3 36 159 1.6E-44 T 22-04-2016 RM11_RS02350 383b023d1e148f10e3dc88ab7eb28477 337 Gene3D G3DSA:3.40.718.10 2 331 2.0E-120 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RM11_RS02350 383b023d1e148f10e3dc88ab7eb28477 337 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 33 325 3.5E-97 T 22-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RM11_RS02350 383b023d1e148f10e3dc88ab7eb28477 337 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 1 329 32.2 T 22-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RM11_RS02350 383b023d1e148f10e3dc88ab7eb28477 337 SUPERFAMILY SSF53659 3 331 6.31E-107 T 22-04-2016 RM11_RS02350 383b023d1e148f10e3dc88ab7eb28477 337 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 4 329 6.8E-121 T 22-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RM11_RS05535 7012f3be285680807233076e18385895 879 SUPERFAMILY SSF52540 159 545 7.32E-98 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05535 7012f3be285680807233076e18385895 879 SMART SM01086 766 855 4.7E-37 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RM11_RS05535 7012f3be285680807233076e18385895 879 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 22-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RM11_RS05535 7012f3be285680807233076e18385895 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 2.1E-42 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RM11_RS05535 7012f3be285680807233076e18385895 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 2.1E-42 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RM11_RS05535 7012f3be285680807233076e18385895 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 2.1E-42 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RM11_RS05535 7012f3be285680807233076e18385895 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 2.1E-42 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RM11_RS05535 7012f3be285680807233076e18385895 879 Gene3D G3DSA:1.10.1780.10 1 149 2.2E-41 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RM11_RS05535 7012f3be285680807233076e18385895 879 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 7 855 0.0 T 22-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 RM11_RS05535 7012f3be285680807233076e18385895 879 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 4.4E-12 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RM11_RS05535 7012f3be285680807233076e18385895 879 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 1.4E-12 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RM11_RS05535 7012f3be285680807233076e18385895 879 Gene3D G3DSA:1.10.8.60 345 429 1.0E-36 T 22-04-2016 RM11_RS05535 7012f3be285680807233076e18385895 879 Gene3D G3DSA:3.40.50.300 553 774 8.6E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05535 7012f3be285680807233076e18385895 879 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 317 5.3E-11 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RM11_RS05535 7012f3be285680807233076e18385895 879 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 22-04-2016 IPR028299 ClpA/B, conserved site 2 RM11_RS05535 7012f3be285680807233076e18385895 879 Gene3D G3DSA:3.40.50.300 161 343 3.8E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05535 7012f3be285680807233076e18385895 879 Gene3D G3DSA:1.10.8.60 775 865 5.5E-32 T 22-04-2016 RM11_RS05535 7012f3be285680807233076e18385895 879 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 1.3E-53 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RM11_RS05535 7012f3be285680807233076e18385895 879 PANTHER PTHR11638 1 876 0.0 T 22-04-2016 RM11_RS05535 7012f3be285680807233076e18385895 879 SUPERFAMILY SSF52540 546 855 8.34E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05535 7012f3be285680807233076e18385895 879 PANTHER PTHR11638:SF18 1 876 0.0 T 22-04-2016 RM11_RS05535 7012f3be285680807233076e18385895 879 SUPERFAMILY SSF81923 4 157 1.08E-39 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RM11_RS05535 7012f3be285680807233076e18385895 879 SMART SM00382 597 767 8.7E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS05535 7012f3be285680807233076e18385895 879 SMART SM00382 199 344 2.8E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS05535 7012f3be285680807233076e18385895 879 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 846 8.5E-27 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RM11_RS02205 51b5181eec90c393bda91b21aec6a6c4 243 Pfam PF11967 Recombination protein O N terminal 1 70 2.1E-18 T 22-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal RM11_RS02205 51b5181eec90c393bda91b21aec6a6c4 243 SUPERFAMILY SSF57863 88 178 7.59E-15 T 22-04-2016 RM11_RS02205 51b5181eec90c393bda91b21aec6a6c4 243 Hamap MF_00201 DNA repair protein RecO [recO]. 1 237 19.233 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RM11_RS02205 51b5181eec90c393bda91b21aec6a6c4 243 Gene3D G3DSA:2.40.50.140 3 55 2.0E-6 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS02205 51b5181eec90c393bda91b21aec6a6c4 243 TIGRFAM TIGR00613 reco: DNA repair protein RecO 3 223 3.7E-47 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RM11_RS02205 51b5181eec90c393bda91b21aec6a6c4 243 SUPERFAMILY SSF50249 2 69 2.4E-10 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS02205 51b5181eec90c393bda91b21aec6a6c4 243 ProDom PD202328 DNA REPAIR RECOMBINATION RECO DAMAGE O O RECO-RELATED RECOMBINATIONAL RP549 117 219 1.0E-53 T 22-04-2016 RM11_RS02205 51b5181eec90c393bda91b21aec6a6c4 243 Pfam PF02565 Recombination protein O C terminal 88 198 8.0E-23 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 Pfam PF03895 YadA-like C-terminal region 988 1062 1.4E-14 T 22-04-2016 IPR005594 YadA-like, C-terminal RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 818 840 3.1E-6 T 22-04-2016 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 312 332 2.1E-6 T 22-04-2016 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 SUPERFAMILY SSF54523 925 931 2.98E-19 T 22-04-2016 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 SUPERFAMILY SSF54523 974 1062 2.98E-19 T 22-04-2016 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 SUPERFAMILY SSF101967 265 336 2.88E-10 T 22-04-2016 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 Gene3D G3DSA:3.30.1300.30 974 1062 2.5E-23 T 22-04-2016 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 Gene3D G3DSA:3.30.1300.30 924 931 2.5E-23 T 22-04-2016 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 SUPERFAMILY SSF101967 133 217 7.85E-8 T 22-04-2016 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 Gene3D G3DSA:1.20.5.170 568 602 6.3E-5 T 22-04-2016 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 Gene3D G3DSA:1.20.5.170 817 878 8.9E-8 T 22-04-2016 RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 Gene3D G3DSA:2.150.10.10 146 216 2.3E-8 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RM11_RS00675 0fcf2ca7d6a7eae39acacf27b11da723 1065 Gene3D G3DSA:2.150.10.10 306 336 2.4E-5 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RM11_RS05595 6e44fae1efb03f9246c56899196805b3 59 Gene3D G3DSA:3.40.50.10090 15 46 6.2E-4 T 22-04-2016 RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 Gene3D G3DSA:3.40.50.300 5 174 4.6E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 SUPERFAMILY SSF52540 12 183 8.5E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 165 1.7E-23 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 Pfam PF07650 KH domain 209 285 7.3E-19 T 22-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 PANTHER PTHR11649 6 296 2.2E-113 T 22-04-2016 RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 Gene3D G3DSA:3.30.300.20 189 291 6.3E-39 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 Pfam PF01926 50S ribosome-binding GTPase 12 126 1.1E-23 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 TIGRFAM TIGR00436 era: GTP-binding protein Era 10 280 5.3E-74 T 22-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 PANTHER PTHR11649:SF3 6 296 2.2E-113 T 22-04-2016 RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 Hamap MF_00367 GTPase Era [era]. 7 297 32.37 T 22-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RM11_RS02200 06c798858b708dba1995a132f6fb9448 301 SUPERFAMILY SSF54814 182 298 7.85E-41 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RM11_RS04775 41e88bb8d23245d0e23f240d0822b8f0 208 SUPERFAMILY SSF48150 26 208 3.66E-72 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RM11_RS04775 41e88bb8d23245d0e23f240d0822b8f0 208 PANTHER PTHR30037 12 208 2.8E-87 T 22-04-2016 RM11_RS04775 41e88bb8d23245d0e23f240d0822b8f0 208 PANTHER PTHR30037:SF4 12 208 2.8E-87 T 22-04-2016 RM11_RS04775 41e88bb8d23245d0e23f240d0822b8f0 208 Gene3D G3DSA:1.10.340.30 26 208 2.1E-73 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RM11_RS04775 41e88bb8d23245d0e23f240d0822b8f0 208 Pfam PF03352 Methyladenine glycosylase 30 207 3.5E-70 T 22-04-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 PANTHER PTHR33540 1 206 2.0E-30 T 22-04-2016 RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 SUPERFAMILY SSF56112 164 483 2.21E-35 T 22-04-2016 IPR011009 Protein kinase-like domain RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 PIRSF PIRSF036599 1 499 1.9E-183 T 22-04-2016 IPR012180 Predicted bifunctional ATPase/phosphotransferase RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 8 129 8.2E-30 T 22-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 PANTHER PTHR33540:SF2 1 206 2.0E-30 T 22-04-2016 RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 Pfam PF01636 Phosphotransferase enzyme family 167 418 1.6E-14 T 22-04-2016 IPR002575 Aminoglycoside phosphotransferase RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 Gene3D G3DSA:3.40.50.300 3 147 3.7E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 139 2.0E-27 T 22-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 SUPERFAMILY SSF52540 15 132 9.13E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 Gene3D G3DSA:3.90.1200.10 257 492 2.4E-53 T 22-04-2016 RM11_RS00140 254ec8422ab4f30f8022bc7dda220629 500 Gene3D G3DSA:3.30.200.20 148 251 7.8E-20 T 22-04-2016 RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 326 2.4E-134 T 22-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 15 235 3.3E-110 T 22-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 251 327 1.0E-37 T 22-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 Gene3D G3DSA:1.10.10.10 257 327 6.0E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 PANTHER PTHR13779:SF25 14 335 3.5E-162 T 22-04-2016 RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 SMART SM00382 51 182 4.5E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 Gene3D G3DSA:3.40.50.300 20 178 1.8E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 Gene3D G3DSA:1.10.8.60 183 255 1.5E-30 T 22-04-2016 RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 SUPERFAMILY SSF52540 20 251 2.56E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 SUPERFAMILY SSF46785 256 330 7.08E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 PANTHER PTHR13779 14 335 3.5E-162 T 22-04-2016 RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 361 165.978 T 22-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RM11_RS05900 fd53e570cfb15f4e5480eef3b50ef906 361 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 253 326 2.7E-31 T 22-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 PRINTS PR00125 ATP synthase delta subunit signature 99 113 1.3E-20 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 PRINTS PR00125 ATP synthase delta subunit signature 13 32 1.3E-20 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 PRINTS PR00125 ATP synthase delta subunit signature 88 99 1.3E-20 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 PRINTS PR00125 ATP synthase delta subunit signature 149 164 1.3E-20 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 PRINTS PR00125 ATP synthase delta subunit signature 164 182 1.3E-20 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 Hamap MF_01416 ATP synthase subunit delta [atpD]. 9 191 17.159 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 SUPERFAMILY SSF47928 11 118 2.09E-19 T 22-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 Gene3D G3DSA:1.10.520.20 13 118 6.4E-20 T 22-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 PANTHER PTHR11910 13 193 5.6E-40 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 13 188 4.0E-31 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 Pfam PF00213 ATP synthase delta (OSCP) subunit 13 189 1.2E-44 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RM11_RS06105 bf0e7370a53bf3c103752941b0e953fa 194 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 151 170 - T 22-04-2016 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 SUPERFAMILY SSF51419 17 262 1.06E-66 T 22-04-2016 IPR029066 PLP-binding barrel RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PANTHER PTHR11482 18 377 8.5E-122 T 22-04-2016 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 SUPERFAMILY SSF50621 231 375 7.33E-32 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 32 260 7.3E-58 T 22-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 267 373 3.1E-15 T 22-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 205 218 - T 22-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 Gene3D G3DSA:3.20.20.10 26 246 8.1E-69 T 22-04-2016 IPR029066 PLP-binding barrel RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PANTHER PTHR11482:SF6 18 377 8.5E-122 T 22-04-2016 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 167 180 5.0E-19 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 250 269 5.0E-19 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 45 63 5.0E-19 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 65 77 5.0E-19 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PRINTS PR01182 Ornithine decarboxylase signature 87 111 1.4E-21 T 22-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PRINTS PR01182 Ornithine decarboxylase signature 17 41 1.4E-21 T 22-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PRINTS PR01182 Ornithine decarboxylase signature 319 329 1.4E-21 T 22-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PRINTS PR01182 Ornithine decarboxylase signature 43 70 1.4E-21 T 22-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 PRINTS PR01182 Ornithine decarboxylase signature 117 139 1.4E-21 T 22-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 45 63 - T 22-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 RM11_RS04970 8569536966f0d8facf638dabc98461f7 377 Gene3D G3DSA:2.40.37.10 247 376 5.3E-27 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RM11_RS03205 7a26981911cb26807c78f311275b3a82 159 SMART SM00732 17 117 6.3E-29 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RM11_RS03205 7a26981911cb26807c78f311275b3a82 159 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 21 148 6.6E-30 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RM11_RS03205 7a26981911cb26807c78f311275b3a82 159 PANTHER PTHR33317 16 152 1.2E-36 T 22-04-2016 RM11_RS03205 7a26981911cb26807c78f311275b3a82 159 PANTHER PTHR33317:SF1 16 152 1.2E-36 T 22-04-2016 RM11_RS03205 7a26981911cb26807c78f311275b3a82 159 Gene3D G3DSA:3.30.420.140 17 153 2.1E-44 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RM11_RS03205 7a26981911cb26807c78f311275b3a82 159 SUPERFAMILY SSF53098 18 151 1.67E-38 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS03205 7a26981911cb26807c78f311275b3a82 159 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 17 152 22.477 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RM11_RS03205 7a26981911cb26807c78f311275b3a82 159 Pfam PF03652 Holliday junction resolvase 18 149 1.3E-38 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RM11_RS00530 cd9c5f620a981f834c78de7b48f1ded2 208 PANTHER PTHR24220 4 189 4.4E-60 T 22-04-2016 RM11_RS00530 cd9c5f620a981f834c78de7b48f1ded2 208 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 3 196 1.5E-60 T 22-04-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 RM11_RS00530 cd9c5f620a981f834c78de7b48f1ded2 208 Gene3D G3DSA:3.40.50.300 7 185 4.1E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00530 cd9c5f620a981f834c78de7b48f1ded2 208 SMART SM00382 27 206 1.2E-6 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS00530 cd9c5f620a981f834c78de7b48f1ded2 208 Pfam PF00005 ABC transporter 19 154 8.3E-23 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS00530 cd9c5f620a981f834c78de7b48f1ded2 208 PANTHER PTHR24220:SF508 4 189 4.4E-60 T 22-04-2016 RM11_RS00530 cd9c5f620a981f834c78de7b48f1ded2 208 SUPERFAMILY SSF52540 5 186 2.46E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01015 e0d3c583bd4f4ac9efcb00657049dfd1 216 SUPERFAMILY SSF74942 109 183 6.28E-14 T 22-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RM11_RS01015 e0d3c583bd4f4ac9efcb00657049dfd1 216 PANTHER PTHR33867:SF1 25 203 2.9E-35 T 22-04-2016 RM11_RS01015 e0d3c583bd4f4ac9efcb00657049dfd1 216 PANTHER PTHR33867 25 203 2.9E-35 T 22-04-2016 RM11_RS01015 e0d3c583bd4f4ac9efcb00657049dfd1 216 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 31 182 20.902 T 22-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RM11_RS01015 e0d3c583bd4f4ac9efcb00657049dfd1 216 Gene3D G3DSA:2.30.30.180 113 179 6.9E-11 T 22-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RM11_RS01015 e0d3c583bd4f4ac9efcb00657049dfd1 216 SUPERFAMILY SSF75420 25 108 1.57E-20 T 22-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RM11_RS01015 e0d3c583bd4f4ac9efcb00657049dfd1 216 Pfam PF02576 Putative ribosome maturation factor RimP 37 178 2.3E-38 T 22-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RM11_RS01015 e0d3c583bd4f4ac9efcb00657049dfd1 216 Gene3D G3DSA:3.30.300.70 28 105 2.9E-21 T 22-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 SUPERFAMILY SSF144052 12 415 2.35E-135 T 22-04-2016 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 86 105 4.7E-76 T 22-04-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 251 270 4.7E-76 T 22-04-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 21 38 4.7E-76 T 22-04-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 395 414 4.7E-76 T 22-04-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 162 184 4.7E-76 T 22-04-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 307 327 4.7E-76 T 22-04-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 369 391 4.7E-76 T 22-04-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 330 351 4.7E-76 T 22-04-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 PANTHER PTHR34448 8 415 6.6E-205 T 22-04-2016 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 PANTHER PTHR34448:SF3 8 415 6.6E-205 T 22-04-2016 RM11_RS01165 c9d85a9d0c147c63c248c6c3cc33d78e 415 Pfam PF02073 Thermophilic metalloprotease (M29) 12 414 5.5E-154 T 22-04-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 RM11_RS00055 1d2f8bf0b03582110f4f5723a4d7e01d 273 SUPERFAMILY SSF55315 10 112 4.24E-23 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like RM11_RS00055 1d2f8bf0b03582110f4f5723a4d7e01d 273 Pfam PF00588 SpoU rRNA Methylase family 126 266 8.3E-35 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RM11_RS00055 1d2f8bf0b03582110f4f5723a4d7e01d 273 Gene3D G3DSA:3.30.1330.30 16 114 9.3E-28 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like RM11_RS00055 1d2f8bf0b03582110f4f5723a4d7e01d 273 PANTHER PTHR12029:SF61 9 270 5.5E-59 T 22-04-2016 RM11_RS00055 1d2f8bf0b03582110f4f5723a4d7e01d 273 SUPERFAMILY SSF75217 110 272 6.21E-43 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases RM11_RS00055 1d2f8bf0b03582110f4f5723a4d7e01d 273 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 40 105 2.6E-5 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RM11_RS00055 1d2f8bf0b03582110f4f5723a4d7e01d 273 SMART SM00967 39 115 1.6E-6 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RM11_RS00055 1d2f8bf0b03582110f4f5723a4d7e01d 273 Gene3D G3DSA:3.40.1280.10 120 271 1.2E-47 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RM11_RS00055 1d2f8bf0b03582110f4f5723a4d7e01d 273 PANTHER PTHR12029 9 270 5.5E-59 T 22-04-2016 RM11_RS06715 a0b6b527f5b62956d5c400af6a6c9b72 391 Pfam PF03969 AFG1-like ATPase 5 379 1.4E-115 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RM11_RS06715 a0b6b527f5b62956d5c400af6a6c9b72 391 PANTHER PTHR12169 8 388 1.0E-136 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RM11_RS06715 a0b6b527f5b62956d5c400af6a6c9b72 391 SUPERFAMILY SSF52540 43 217 5.42E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06715 a0b6b527f5b62956d5c400af6a6c9b72 391 Gene3D G3DSA:3.40.50.300 60 191 3.6E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01670 2da6f4cf75e0a729bfccfc8c2194c29c 193 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 22-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RM11_RS01670 2da6f4cf75e0a729bfccfc8c2194c29c 193 SUPERFAMILY SSF53178 1 183 6.02E-67 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RM11_RS01670 2da6f4cf75e0a729bfccfc8c2194c29c 193 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 174 1.6E-56 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RM11_RS01670 2da6f4cf75e0a729bfccfc8c2194c29c 193 PANTHER PTHR17224 1 172 1.8E-70 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RM11_RS01670 2da6f4cf75e0a729bfccfc8c2194c29c 193 Gene3D G3DSA:3.40.50.1470 1 181 7.0E-67 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RM11_RS01670 2da6f4cf75e0a729bfccfc8c2194c29c 193 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 22-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RM11_RS01670 2da6f4cf75e0a729bfccfc8c2194c29c 193 Pfam PF01195 Peptidyl-tRNA hydrolase 3 174 1.3E-52 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RM11_RS01670 2da6f4cf75e0a729bfccfc8c2194c29c 193 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 177 33.655 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RM11_RS03270 b8f5f9ca0f009393048d15af58c7b9c4 326 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 93 111 - T 22-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RM11_RS03270 b8f5f9ca0f009393048d15af58c7b9c4 326 PANTHER PTHR11082:SF29 5 311 3.6E-126 T 22-04-2016 RM11_RS03270 b8f5f9ca0f009393048d15af58c7b9c4 326 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 5 326 45.005 T 22-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RM11_RS03270 b8f5f9ca0f009393048d15af58c7b9c4 326 PANTHER PTHR11082 5 311 3.6E-126 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RM11_RS03270 b8f5f9ca0f009393048d15af58c7b9c4 326 SUPERFAMILY SSF51395 11 322 1.05E-70 T 22-04-2016 RM11_RS03270 b8f5f9ca0f009393048d15af58c7b9c4 326 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 11 324 2.2E-126 T 22-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RM11_RS03270 b8f5f9ca0f009393048d15af58c7b9c4 326 PIRSF PIRSF006621 3 325 3.2E-70 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RM11_RS03270 b8f5f9ca0f009393048d15af58c7b9c4 326 Gene3D G3DSA:3.20.20.70 11 254 1.4E-71 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS03270 b8f5f9ca0f009393048d15af58c7b9c4 326 Pfam PF01207 Dihydrouridine synthase (Dus) 14 315 2.5E-76 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RM11_RS06370 7aa4ee90ecd479122d391c52308b3e57 273 Pfam PF07277 SapC 14 235 2.8E-67 T 22-04-2016 IPR010836 SapC RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 SUPERFAMILY SSF54991 708 803 1.31E-23 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 SUPERFAMILY SSF46955 404 475 7.87E-17 T 22-04-2016 IPR009061 Putative DNA-binding domain RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 SUPERFAMILY SSF50249 39 193 1.08E-43 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Gene3D G3DSA:2.40.50.140 40 224 2.0E-46 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 SMART SM00874 403 471 1.2E-24 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Gene3D G3DSA:3.50.40.10 225 393 1.1E-74 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 SMART SM00873 215 387 3.3E-74 T 22-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Pfam PF03483 B3/4 domain 216 387 3.7E-61 T 22-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Gene3D G3DSA:3.30.56.10 1 38 1.0E-22 T 22-04-2016 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 SUPERFAMILY SSF56037 211 398 3.92E-65 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 803 8.2E-209 T 22-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Gene3D G3DSA:3.30.930.10 491 695 1.9E-56 T 22-04-2016 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Gene3D G3DSA:3.30.70.380 712 803 1.2E-23 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 SMART SM00896 710 803 2.3E-31 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Gene3D G3DSA:3.30.56.20 403 475 1.9E-23 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Pfam PF03484 tRNA synthetase B5 domain 406 470 3.0E-17 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 SUPERFAMILY SSF55681 467 694 5.96E-42 T 22-04-2016 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 797 39.89 T 22-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Pfam PF01588 Putative tRNA binding domain 44 144 3.6E-21 T 22-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 RM11_RS00395 5bd30783ad970de9f59fd0487bb06025 804 Pfam PF03147 Ferredoxin-fold anticodon binding domain 710 803 2.1E-21 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RM11_RS03940 b2e6ac43453163a31bcb74aacf4b10ef 172 SUPERFAMILY SSF50249 4 172 3.43E-52 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03940 b2e6ac43453163a31bcb74aacf4b10ef 172 PANTHER PTHR10302:SF0 1 160 2.4E-49 T 22-04-2016 RM11_RS03940 b2e6ac43453163a31bcb74aacf4b10ef 172 Hamap MF_00984 Single-stranded DNA-binding protein. 5 118 36.836 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RM11_RS03940 b2e6ac43453163a31bcb74aacf4b10ef 172 Gene3D G3DSA:2.40.50.140 2 172 3.2E-52 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03940 b2e6ac43453163a31bcb74aacf4b10ef 172 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 172 1.2E-49 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RM11_RS03940 b2e6ac43453163a31bcb74aacf4b10ef 172 Pfam PF00436 Single-strand binding protein family 5 106 2.3E-39 T 22-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 RM11_RS03940 b2e6ac43453163a31bcb74aacf4b10ef 172 PANTHER PTHR10302 1 160 2.4E-49 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RM11_RS01220 2f97392aeaeb09b177c8d326f8166c4b 468 SMART SM00363 8 69 3.0E-8 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS01220 2f97392aeaeb09b177c8d326f8166c4b 468 SUPERFAMILY SSF55174 7 73 1.1E-13 T 22-04-2016 RM11_RS01220 2f97392aeaeb09b177c8d326f8166c4b 468 Gene3D G3DSA:3.10.290.10 6 70 3.0E-20 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS01220 2f97392aeaeb09b177c8d326f8166c4b 468 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 106 120 - T 22-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RM11_RS01220 2f97392aeaeb09b177c8d326f8166c4b 468 Pfam PF00849 RNA pseudouridylate synthase 69 144 4.0E-8 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS01220 2f97392aeaeb09b177c8d326f8166c4b 468 SUPERFAMILY SSF55120 66 231 3.24E-35 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS01220 2f97392aeaeb09b177c8d326f8166c4b 468 PANTHER PTHR21600:SF2 2 322 9.2E-72 T 22-04-2016 RM11_RS01220 2f97392aeaeb09b177c8d326f8166c4b 468 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 231 2.2E-38 T 22-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RM11_RS01220 2f97392aeaeb09b177c8d326f8166c4b 468 PANTHER PTHR21600 2 322 9.2E-72 T 22-04-2016 RM11_RS01220 2f97392aeaeb09b177c8d326f8166c4b 468 Pfam PF01479 S4 domain 8 54 4.7E-10 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 Gene3D G3DSA:4.10.950.10 196 272 1.2E-32 T 22-04-2016 IPR014726 Ribosomal protein L2, domain 3 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 4.6E-57 T 22-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 Gene3D G3DSA:2.40.50.140 1 114 3.2E-45 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 SMART SM01383 42 118 3.2E-39 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 PANTHER PTHR13691 1 277 8.2E-135 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 PANTHER PTHR13691:SF5 1 277 8.2E-135 T 22-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 SUPERFAMILY SSF50249 3 125 4.8E-43 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 SMART SM01382 124 252 3.5E-89 T 22-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 45.042 T 22-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 22-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 PIRSF PIRSF002158 9 275 4.8E-100 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 8.4E-29 T 22-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 Gene3D G3DSA:2.30.30.30 119 195 2.6E-34 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 273 1.4E-121 T 22-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RM11_RS04110 3eef5d856b0b4e616362ee9893003c42 277 SUPERFAMILY SSF50104 126 271 5.96E-61 T 22-04-2016 IPR008991 Translation protein SH3-like domain RM11_RS06470 dd979f4ad7a89a5d22257bfb28916728 519 PIRSF PIRSF031802 1 519 2.3E-163 T 22-04-2016 IPR016982 Uncharacterised conserved protein UCP031802 RM11_RS06470 dd979f4ad7a89a5d22257bfb28916728 519 Pfam PF07219 HemY protein N-terminus 29 132 6.8E-19 T 22-04-2016 IPR010817 HemY, N-terminal UniPathway: UPA00252 RM11_RS06470 dd979f4ad7a89a5d22257bfb28916728 519 SUPERFAMILY SSF48452 124 298 2.78E-12 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS06470 dd979f4ad7a89a5d22257bfb28916728 519 Pfam PF13432 Tetratricopeptide repeat 199 248 0.0081 T 22-04-2016 RM11_RS06470 dd979f4ad7a89a5d22257bfb28916728 519 Gene3D G3DSA:1.25.40.10 123 386 8.7E-20 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS02545 db9d5ea743d1877c8b52bc20f7d888af 153 SUPERFAMILY SSF55961 1 150 4.34E-32 T 22-04-2016 RM11_RS02545 db9d5ea743d1877c8b52bc20f7d888af 153 PANTHER PTHR12901 10 149 3.4E-40 T 22-04-2016 RM11_RS02545 db9d5ea743d1877c8b52bc20f7d888af 153 Gene3D G3DSA:3.30.530.20 1 149 1.3E-50 T 22-04-2016 IPR023393 START-like domain RM11_RS02545 db9d5ea743d1877c8b52bc20f7d888af 153 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 141 4.2E-26 T 22-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain RM11_RS02545 db9d5ea743d1877c8b52bc20f7d888af 153 PANTHER PTHR12901:SF7 10 149 3.4E-40 T 22-04-2016 RM11_RS00820 790901f15585e1e243b73520f87346db 461 Gene3D G3DSA:3.40.50.300 141 302 9.5E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00820 790901f15585e1e243b73520f87346db 461 Pfam PF14532 Sigma-54 interaction domain 148 301 2.0E-15 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RM11_RS00820 790901f15585e1e243b73520f87346db 461 Pfam PF02954 Bacterial regulatory protein, Fis family 413 450 7.6E-11 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RM11_RS00820 790901f15585e1e243b73520f87346db 461 SUPERFAMILY SSF52172 5 187 1.02E-21 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS00820 790901f15585e1e243b73520f87346db 461 SMART SM00448 3 115 9.5E-10 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS00820 790901f15585e1e243b73520f87346db 461 Pfam PF00072 Response regulator receiver domain 5 111 1.1E-9 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS00820 790901f15585e1e243b73520f87346db 461 PANTHER PTHR32071 5 460 1.2E-52 T 22-04-2016 RM11_RS00820 790901f15585e1e243b73520f87346db 461 Gene3D G3DSA:1.10.10.60 408 450 4.4E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RM11_RS00820 790901f15585e1e243b73520f87346db 461 SUPERFAMILY SSF46689 403 450 4.35E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RM11_RS00820 790901f15585e1e243b73520f87346db 461 Gene3D G3DSA:3.40.50.2300 5 118 1.9E-14 T 22-04-2016 RM11_RS00820 790901f15585e1e243b73520f87346db 461 PANTHER PTHR32071:SF18 5 460 1.2E-52 T 22-04-2016 RM11_RS00820 790901f15585e1e243b73520f87346db 461 Gene3D G3DSA:1.10.8.60 303 378 6.4E-15 T 22-04-2016 RM11_RS00820 790901f15585e1e243b73520f87346db 461 SUPERFAMILY SSF52540 144 374 1.24E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04580 3366b0d636bb09b71ba41496635fdda1 172 Gene3D G3DSA:3.40.1410.10 14 167 3.2E-54 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RM11_RS04580 3366b0d636bb09b71ba41496635fdda1 172 Pfam PF04345 Chorismate lyase 15 170 5.2E-36 T 22-04-2016 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|UniPathway: UPA00232 RM11_RS04580 3366b0d636bb09b71ba41496635fdda1 172 PANTHER PTHR38683 1 172 7.8E-58 T 22-04-2016 RM11_RS04580 3366b0d636bb09b71ba41496635fdda1 172 SUPERFAMILY SSF64288 9 167 6.83E-47 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RM11_RS04580 3366b0d636bb09b71ba41496635fdda1 172 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 13 167 25.329 T 22-04-2016 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|UniPathway: UPA00232 RM11_RS00425 1691a69bd3432801c68192ee03b4f42c 434 SUPERFAMILY SSF51690 139 424 8.63E-85 T 22-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RM11_RS00425 1691a69bd3432801c68192ee03b4f42c 434 Gene3D G3DSA:3.20.140.10 4 408 6.5E-147 T 22-04-2016 RM11_RS00425 1691a69bd3432801c68192ee03b4f42c 434 SUPERFAMILY SSF54675 2 158 5.3E-47 T 22-04-2016 RM11_RS00425 1691a69bd3432801c68192ee03b4f42c 434 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 17 427 39.078 T 22-04-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RM11_RS00425 1691a69bd3432801c68192ee03b4f42c 434 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 189 425 1.8E-69 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RM11_RS00425 1691a69bd3432801c68192ee03b4f42c 434 PIRSF PIRSF000484 10 421 4.4E-66 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RM11_RS00425 1691a69bd3432801c68192ee03b4f42c 434 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 20 423 6.5E-89 T 22-04-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RM11_RS01060 70e782e6f6ad3342aafd2f8b747a690a 163 SUPERFAMILY SSF55729 12 158 1.29E-25 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RM11_RS01060 70e782e6f6ad3342aafd2f8b747a690a 163 Gene3D G3DSA:3.40.630.30 14 159 8.3E-26 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RM11_RS01060 70e782e6f6ad3342aafd2f8b747a690a 163 Pfam PF00583 Acetyltransferase (GNAT) family 62 134 4.1E-13 T 22-04-2016 IPR000182 GNAT domain GO:0008080 RM11_RS01060 70e782e6f6ad3342aafd2f8b747a690a 163 PANTHER PTHR23091 15 161 7.2E-21 T 22-04-2016 RM11_RS01060 70e782e6f6ad3342aafd2f8b747a690a 163 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 24 155 2.4E-26 T 22-04-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 RM11_RS01700 3b8c0cd9bb95e92aaf2a6b4d29e01768 263 SUPERFAMILY SSF64438 17 259 6.78E-86 T 22-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic RM11_RS01700 3b8c0cd9bb95e92aaf2a6b4d29e01768 263 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 33 246 4.9E-56 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RM11_RS01700 3b8c0cd9bb95e92aaf2a6b4d29e01768 263 Gene3D G3DSA:3.60.140.10 19 260 1.5E-87 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RM11_RS01700 3b8c0cd9bb95e92aaf2a6b4d29e01768 263 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 26 257 4.4E-71 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RM11_RS01700 3b8c0cd9bb95e92aaf2a6b4d29e01768 263 PANTHER PTHR30616 20 261 7.7E-81 T 22-04-2016 RM11_RS01195 56e31df5ea2133e833c9dd90906b63f4 272 SUPERFAMILY SSF56925 40 116 1.92E-24 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS01195 56e31df5ea2133e833c9dd90906b63f4 272 SUPERFAMILY SSF56925 151 272 1.92E-24 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS01195 56e31df5ea2133e833c9dd90906b63f4 272 Pfam PF13505 Outer membrane protein beta-barrel domain 11 272 8.9E-15 T 22-04-2016 IPR027385 Outer membrane protein beta-barrel RM11_RS01195 56e31df5ea2133e833c9dd90906b63f4 272 Gene3D G3DSA:2.40.160.20 159 272 2.0E-40 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS01195 56e31df5ea2133e833c9dd90906b63f4 272 Gene3D G3DSA:2.40.160.20 40 118 2.0E-40 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS00480 2029f4251a266a1acb3e42e1727004b0 230 PIRSF PIRSF031890 1 230 9.0E-85 T 22-04-2016 IPR016985 Uncharacterised conserved protein UCP031890, Tim44-related RM11_RS00480 2029f4251a266a1acb3e42e1727004b0 230 PANTHER PTHR10721:SF2 81 223 6.4E-42 T 22-04-2016 RM11_RS00480 2029f4251a266a1acb3e42e1727004b0 230 SMART SM00978 82 228 4.7E-50 T 22-04-2016 IPR007379 Tim44-like domain RM11_RS00480 2029f4251a266a1acb3e42e1727004b0 230 Pfam PF04280 Tim44-like domain 83 227 7.4E-42 T 22-04-2016 IPR007379 Tim44-like domain RM11_RS00480 2029f4251a266a1acb3e42e1727004b0 230 SUPERFAMILY SSF54427 77 227 2.28E-48 T 22-04-2016 IPR032710 NTF2-like domain RM11_RS00480 2029f4251a266a1acb3e42e1727004b0 230 SUPERFAMILY SSF54427 17 46 2.28E-48 T 22-04-2016 IPR032710 NTF2-like domain RM11_RS00480 2029f4251a266a1acb3e42e1727004b0 230 PANTHER PTHR10721 81 223 6.4E-42 T 22-04-2016 RM11_RS03405 895401aa2159de19918e585fb1a09565 458 Pfam PF01474 Class-II DAHP synthetase family 5 441 5.6E-202 T 22-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RM11_RS03405 895401aa2159de19918e585fb1a09565 458 PANTHER PTHR21337 3 448 3.8E-279 T 22-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RM11_RS03405 895401aa2159de19918e585fb1a09565 458 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 5 447 1.3E-210 T 22-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RM11_RS03405 895401aa2159de19918e585fb1a09565 458 SUPERFAMILY SSF51569 2 445 8.06E-199 T 22-04-2016 RM11_RS01740 8d46b1fda6103687f80bf4e551fe412f 217 PANTHER PTHR11935:SF115 1 212 1.9E-87 T 22-04-2016 RM11_RS01740 8d46b1fda6103687f80bf4e551fe412f 217 Pfam PF00753 Metallo-beta-lactamase superfamily 12 195 7.3E-27 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS01740 8d46b1fda6103687f80bf4e551fe412f 217 Gene3D G3DSA:3.60.15.10 4 213 2.0E-53 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS01740 8d46b1fda6103687f80bf4e551fe412f 217 SUPERFAMILY SSF56281 5 212 6.36E-51 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS01740 8d46b1fda6103687f80bf4e551fe412f 217 PANTHER PTHR11935 1 212 1.9E-87 T 22-04-2016 RM11_RS01740 8d46b1fda6103687f80bf4e551fe412f 217 SMART SM00849 15 195 2.2E-34 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS00225 b951eb1c2233ad09541c3721910e635d 172 SUPERFAMILY SSF55200 87 172 1.83E-33 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RM11_RS00225 b951eb1c2233ad09541c3721910e635d 172 PANTHER PTHR10938 5 172 3.0E-61 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RM11_RS00225 b951eb1c2233ad09541c3721910e635d 172 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 4 172 27.118 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RM11_RS00225 b951eb1c2233ad09541c3721910e635d 172 Gene3D G3DSA:3.10.20.80 6 82 5.6E-30 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RM11_RS00225 b951eb1c2233ad09541c3721910e635d 172 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 12 172 3.9E-62 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RM11_RS00225 b951eb1c2233ad09541c3721910e635d 172 SUPERFAMILY SSF54364 8 82 6.02E-26 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RM11_RS00225 b951eb1c2233ad09541c3721910e635d 172 Gene3D G3DSA:3.30.110.10 83 172 6.1E-39 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RM11_RS00225 b951eb1c2233ad09541c3721910e635d 172 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 12 79 4.1E-25 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RM11_RS00225 b951eb1c2233ad09541c3721910e635d 172 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 87 172 1.7E-38 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 442 597 6.8E-9 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 21 177 4.0E-24 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 637 676 2.5E-8 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 192 205 1.3E-43 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 582 592 1.3E-43 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 134 151 1.3E-43 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 222 241 1.3E-43 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 160 176 1.3E-43 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 549 571 1.3E-43 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 511 529 1.3E-43 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 11 880 22.027 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 12 880 2.6E-302 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 49 60 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Gene3D G3DSA:3.40.50.620 449 598 2.4E-148 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Gene3D G3DSA:3.40.50.620 11 229 2.4E-148 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Gene3D G3DSA:3.40.50.620 637 666 2.4E-148 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 228 422 1.6E-62 T 22-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Gene3D G3DSA:3.90.740.10 230 448 1.1E-48 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 SUPERFAMILY SSF47323 681 879 2.06E-29 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 SUPERFAMILY SSF52374 10 233 2.82E-144 T 22-04-2016 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 SUPERFAMILY SSF52374 440 687 2.82E-144 T 22-04-2016 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Pfam PF08264 Anticodon-binding domain of tRNA 722 840 1.5E-14 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 Gene3D G3DSA:1.10.730.10 667 816 1.6E-34 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS06125 235af2126c59809c0309b487dba1cb14 880 SUPERFAMILY SSF50677 234 425 1.57E-43 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 PIRSF PIRSF000485 18 489 8.6E-157 T 22-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 SUPERFAMILY SSF56235 22 239 7.55E-64 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 Gene3D G3DSA:3.40.50.2020 284 449 5.9E-44 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 22 474 4.4E-142 T 22-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 Pfam PF13537 Glutamine amidotransferase domain 101 219 5.9E-19 T 22-04-2016 IPR017932 Glutamine amidotransferase type 2 domain RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 PANTHER PTHR11907:SF0 19 487 1.1E-207 T 22-04-2016 RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 SUPERFAMILY SSF53271 262 484 7.21E-71 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 21 475 43.97 T 22-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 Pfam PF00156 Phosphoribosyl transferase domain 299 396 6.7E-10 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 PANTHER PTHR11907 19 487 1.1E-207 T 22-04-2016 RM11_RS02270 2b4fc59b978c8f91204186d12024b225 496 Gene3D G3DSA:3.60.20.10 22 269 1.9E-58 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Pfam PF04998 RNA polymerase Rpb1, domain 5 763 1307 1.1E-68 T 22-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 20 1024 0.0 T 22-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 PANTHER PTHR19376:SF32 1172 1258 0.0 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 PANTHER PTHR19376:SF32 957 1152 0.0 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 PANTHER PTHR19376:SF32 5 940 0.0 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 PANTHER PTHR19376:SF32 1299 1358 0.0 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 SMART SM00663 237 516 1.8E-178 T 22-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 344 1.5E-87 T 22-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Gene3D G3DSA:2.40.40.20 351 378 3.5E-37 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Gene3D G3DSA:2.40.40.20 419 491 3.5E-37 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 PANTHER PTHR19376 1172 1258 0.0 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 PANTHER PTHR19376 957 1152 0.0 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 PANTHER PTHR19376 5 940 0.0 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 PANTHER PTHR19376 1299 1358 0.0 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 14 638 32.048 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Pfam PF04983 RNA polymerase Rpb1, domain 3 491 644 5.2E-27 T 22-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 16 1381 10.31 T 22-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Pfam PF00623 RNA polymerase Rpb1, domain 2 346 487 1.0E-33 T 22-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 SUPERFAMILY SSF64484 17 941 0.0 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 SUPERFAMILY SSF64484 1128 1359 0.0 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Pfam PF05000 RNA polymerase Rpb1, domain 4 673 759 3.0E-17 T 22-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Gene3D G3DSA:2.40.50.100 1150 1204 1.2E-6 T 22-04-2016 RM11_RS03565 2a8090e0c1cad018630cda2a00b858aa 1402 Gene3D G3DSA:2.40.50.100 976 1013 1.7E-4 T 22-04-2016 RM11_RS04625 575619816be1501e686cbbf30f9f95ad 352 Pfam PF00534 Glycosyl transferases group 1 163 314 1.1E-28 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 RM11_RS04625 575619816be1501e686cbbf30f9f95ad 352 SUPERFAMILY SSF53756 15 346 6.28E-55 T 22-04-2016 RM11_RS04625 575619816be1501e686cbbf30f9f95ad 352 PANTHER PTHR12526 104 346 3.6E-34 T 22-04-2016 RM11_RS04625 575619816be1501e686cbbf30f9f95ad 352 PANTHER PTHR12526:SF374 104 346 3.6E-34 T 22-04-2016 RM11_RS04625 575619816be1501e686cbbf30f9f95ad 352 Gene3D G3DSA:3.40.50.2000 165 310 1.8E-21 T 22-04-2016 RM11_RS02700 fce2f54555838994e35ce891008903f4 391 SUPERFAMILY SSF53901 235 362 4.43E-10 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02700 fce2f54555838994e35ce891008903f4 391 SUPERFAMILY SSF53901 4 261 6.45E-30 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02700 fce2f54555838994e35ce891008903f4 391 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 5 254 3.7E-14 T 22-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RM11_RS02700 fce2f54555838994e35ce891008903f4 391 Gene3D G3DSA:3.40.47.10 2 266 1.0E-29 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS00010 0bc8106ffb4577f9444fb4bc3cea6e2c 198 Gene3D G3DSA:3.90.950.10 5 195 1.6E-45 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RM11_RS00010 0bc8106ffb4577f9444fb4bc3cea6e2c 198 SUPERFAMILY SSF52972 5 192 1.31E-44 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RM11_RS00010 0bc8106ffb4577f9444fb4bc3cea6e2c 198 PIRSF PIRSF006305 1 197 2.7E-38 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RM11_RS00010 0bc8106ffb4577f9444fb4bc3cea6e2c 198 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 190 1.1E-39 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RM11_RS00010 0bc8106ffb4577f9444fb4bc3cea6e2c 198 Pfam PF02545 Maf-like protein 6 191 1.9E-34 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RM11_RS00010 0bc8106ffb4577f9444fb4bc3cea6e2c 198 Hamap MF_00528 Septum formation protein Maf [maf]. 5 197 24.649 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RM11_RS04695 b290391e84d20cd75e3b02edc7b83187 408 Gene3D G3DSA:2.30.30.280 230 284 7.0E-16 T 22-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 RM11_RS04695 b290391e84d20cd75e3b02edc7b83187 408 Pfam PF03054 tRNA methyl transferase 16 372 1.6E-112 T 22-04-2016 RM11_RS04695 b290391e84d20cd75e3b02edc7b83187 408 Gene3D G3DSA:3.40.50.620 13 222 1.3E-80 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS04695 b290391e84d20cd75e3b02edc7b83187 408 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 16 371 1.2E-96 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RM11_RS04695 b290391e84d20cd75e3b02edc7b83187 408 PANTHER PTHR11933 11 398 9.2E-155 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RM11_RS04695 b290391e84d20cd75e3b02edc7b83187 408 PANTHER PTHR11933:SF10 11 398 9.2E-155 T 22-04-2016 RM11_RS04695 b290391e84d20cd75e3b02edc7b83187 408 Gene3D G3DSA:2.40.30.10 288 376 3.1E-18 T 22-04-2016 RM11_RS04695 b290391e84d20cd75e3b02edc7b83187 408 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 15 373 39.301 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RM11_RS04695 b290391e84d20cd75e3b02edc7b83187 408 SUPERFAMILY SSF52402 14 257 1.21E-51 T 22-04-2016 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 Pfam PF00154 recA bacterial DNA recombination protein 5 267 3.9E-147 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 PRINTS PR00142 RecA protein signature 242 271 1.2E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 PRINTS PR00142 RecA protein signature 209 237 1.2E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 PRINTS PR00142 RecA protein signature 126 155 1.2E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 PRINTS PR00142 RecA protein signature 164 193 1.2E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 PRINTS PR00142 RecA protein signature 296 313 1.2E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 PRINTS PR00142 RecA protein signature 92 121 1.2E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 PANTHER PTHR22942 3 334 1.7E-204 T 22-04-2016 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 2 322 1.8E-174 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 SUPERFAMILY SSF54752 267 324 9.68E-22 T 22-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 PANTHER PTHR22942:SF1 3 334 1.7E-204 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 Gene3D G3DSA:3.40.50.300 31 266 2.6E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 Hamap MF_00268 Protein RecA [recA]. 3 328 52.001 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 Gene3D G3DSA:3.30.250.10 267 324 1.6E-27 T 22-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 ProSitePatterns PS00321 recA signature. 212 220 - T 22-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 SMART SM00382 56 227 9.3E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS03985 617d2713b309798e61149c0fbf4f17fd 347 SUPERFAMILY SSF52540 4 266 8.07E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00990 9a3838d626d7c75976d0639b50fe95a8 270 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 13 221 2.7E-63 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00990 9a3838d626d7c75976d0639b50fe95a8 270 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 183 253 8.7E-15 T 22-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal RM11_RS00990 9a3838d626d7c75976d0639b50fe95a8 270 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 12 270 16.868 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00990 9a3838d626d7c75976d0639b50fe95a8 270 PANTHER PTHR13767 6 230 2.6E-90 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00990 9a3838d626d7c75976d0639b50fe95a8 270 SUPERFAMILY SSF55120 12 242 2.01E-75 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RM11_RS00990 9a3838d626d7c75976d0639b50fe95a8 270 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 34 182 2.2E-50 T 22-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 RM11_RS00990 9a3838d626d7c75976d0639b50fe95a8 270 PANTHER PTHR13767:SF2 6 230 2.6E-90 T 22-04-2016 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 SUPERFAMILY SSF56024 326 505 7.22E-55 T 22-04-2016 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 PIRSF PIRSF015589 2 713 4.1E-255 T 22-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 SUPERFAMILY SSF143724 124 323 1.0E-53 T 22-04-2016 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 PANTHER PTHR30218 9 720 0.0 T 22-04-2016 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 Pfam PF13090 Polyphosphate kinase C-terminal domain 341 694 9.7E-147 T 22-04-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 SUPERFAMILY SSF56024 511 695 2.69E-66 T 22-04-2016 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 Hamap MF_00347 Polyphosphate kinase [ppk]. 19 698 29.926 T 22-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 PANTHER PTHR30218:SF0 9 720 0.0 T 22-04-2016 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 Gene3D G3DSA:3.30.870.10 329 509 5.3E-72 T 22-04-2016 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 Pfam PF13089 Polyphosphate kinase N-terminal domain 22 127 1.8E-34 T 22-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 Gene3D G3DSA:3.30.870.10 511 696 1.3E-68 T 22-04-2016 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 Pfam PF02503 Polyphosphate kinase middle domain 136 331 1.2E-50 T 22-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 Gene3D G3DSA:3.30.1840.10 124 309 7.8E-52 T 22-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 SUPERFAMILY SSF140356 19 122 9.29E-35 T 22-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 RM11_RS03800 bf23edbbdda378c0e716bc3b13606fd7 726 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 21 696 1.2E-278 T 22-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 PANTHER PTHR11831:SF4 1 205 4.3E-72 T 22-04-2016 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 SMART SM00363 94 158 1.2E-16 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 SUPERFAMILY SSF55174 5 205 6.8E-62 T 22-04-2016 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 ProSitePatterns PS00632 Ribosomal protein S4 signature. 92 116 - T 22-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 PANTHER PTHR11831 1 205 4.3E-72 T 22-04-2016 IPR022801 Ribosomal protein S4/S9 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 205 32.38 T 22-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 7 93 1.2E-22 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 Gene3D G3DSA:1.10.1050.10 1 96 1.7E-34 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 SMART SM01390 4 93 6.2E-39 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 6 205 3.1E-71 T 22-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 Pfam PF01479 S4 domain 95 141 1.0E-15 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS03120 2ce92f09d6a8dee2b113f9971f358275 205 Gene3D G3DSA:3.10.290.10 97 194 9.1E-31 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS05805 b3c946c902e6a114803066b49302e519 169 PANTHER PTHR30558 10 146 9.6E-38 T 22-04-2016 RM11_RS05805 b3c946c902e6a114803066b49302e519 169 Pfam PF02472 Biopolymer transport protein ExbD/TolR 17 136 2.9E-25 T 22-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RM11_RS05805 b3c946c902e6a114803066b49302e519 169 PANTHER PTHR30558:SF9 10 146 9.6E-38 T 22-04-2016 RM11_RS03195 a7d1e363750ee1581a69acc76ad4529f 496 PANTHER PTHR11895 1 491 2.9E-210 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RM11_RS03195 a7d1e363750ee1581a69acc76ad4529f 496 Gene3D G3DSA:3.90.1300.10 1 492 2.7E-172 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RM11_RS03195 a7d1e363750ee1581a69acc76ad4529f 496 SUPERFAMILY SSF75304 3 489 2.75E-152 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RM11_RS03195 a7d1e363750ee1581a69acc76ad4529f 496 ProSitePatterns PS00571 Amidases signature. 157 188 - T 22-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RM11_RS03195 a7d1e363750ee1581a69acc76ad4529f 496 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 15 484 8.0E-168 T 22-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RM11_RS03195 a7d1e363750ee1581a69acc76ad4529f 496 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 485 89.985 T 22-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RM11_RS03195 a7d1e363750ee1581a69acc76ad4529f 496 Pfam PF01425 Amidase 25 472 8.7E-144 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RM11_RS03195 a7d1e363750ee1581a69acc76ad4529f 496 PANTHER PTHR11895:SF7 1 491 2.9E-210 T 22-04-2016 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 SUPERFAMILY SSF50156 375 460 7.1E-8 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 SMART SM00228 375 456 1.8 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 SMART SM00228 265 347 4.7E-10 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 PANTHER PTHR22939:SF93 27 464 1.7E-113 T 22-04-2016 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 SUPERFAMILY SSF50156 215 241 1.18E-21 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 PRINTS PR00834 HtrA/DegQ protease family signature 305 317 8.1E-52 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 PRINTS PR00834 HtrA/DegQ protease family signature 218 235 8.1E-52 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 PRINTS PR00834 HtrA/DegQ protease family signature 161 185 8.1E-52 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 PRINTS PR00834 HtrA/DegQ protease family signature 119 139 8.1E-52 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 PRINTS PR00834 HtrA/DegQ protease family signature 98 110 8.1E-52 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 PRINTS PR00834 HtrA/DegQ protease family signature 196 213 8.1E-52 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 Gene3D G3DSA:2.40.10.10 36 147 8.0E-34 T 22-04-2016 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 Pfam PF13180 PDZ domain 265 356 9.7E-15 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 SUPERFAMILY SSF50494 35 253 9.38E-63 T 22-04-2016 IPR009003 Peptidase S1, PA clan RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 Gene3D G3DSA:2.30.42.10 265 362 8.2E-24 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 PANTHER PTHR22939 27 464 1.7E-113 T 22-04-2016 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 SUPERFAMILY SSF50156 282 361 1.18E-21 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 36 460 2.5E-140 T 22-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 Pfam PF13365 Trypsin-like peptidase domain 89 225 3.4E-33 T 22-04-2016 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 Gene3D G3DSA:2.40.10.10 152 261 2.7E-41 T 22-04-2016 RM11_RS03995 3d5c54861d55a46ec8292dc4bccae2b3 464 Gene3D G3DSA:2.30.42.10 377 456 1.5E-9 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS00940 054ea65e3526aeebb91fd98f4db9182c 287 Gene3D G3DSA:3.90.1720.10 164 268 6.1E-28 T 22-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RM11_RS00940 054ea65e3526aeebb91fd98f4db9182c 287 PANTHER PTHR21666:SF186 165 267 7.9E-20 T 22-04-2016 RM11_RS00940 054ea65e3526aeebb91fd98f4db9182c 287 PANTHER PTHR21666 165 267 7.9E-20 T 22-04-2016 RM11_RS00940 054ea65e3526aeebb91fd98f4db9182c 287 SUPERFAMILY SSF54001 153 276 2.78E-34 T 22-04-2016 RM11_RS00940 054ea65e3526aeebb91fd98f4db9182c 287 Pfam PF00877 NlpC/P60 family 176 266 1.6E-17 T 22-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RM11_RS05255 892bb5e4b5839272d1c635036d96bef3 639 TIGRFAM TIGR02767 TraG-Ti: Ti-type conjugative transfer system protein TraG 7 632 0.0 T 22-04-2016 IPR014135 Ti-type conjugative transfer system, TraG RM11_RS05255 892bb5e4b5839272d1c635036d96bef3 639 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 157 636 6.7E-102 T 22-04-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 RM11_RS05255 892bb5e4b5839272d1c635036d96bef3 639 Gene3D G3DSA:3.40.50.300 146 284 3.2E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05255 892bb5e4b5839272d1c635036d96bef3 639 Gene3D G3DSA:3.40.50.300 426 622 3.2E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05255 892bb5e4b5839272d1c635036d96bef3 639 SUPERFAMILY SSF52540 191 625 1.12E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05255 892bb5e4b5839272d1c635036d96bef3 639 PANTHER PTHR37937 216 633 3.0E-33 T 22-04-2016 RM11_RS05255 892bb5e4b5839272d1c635036d96bef3 639 PANTHER PTHR37937:SF1 216 633 3.0E-33 T 22-04-2016 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 SUPERFAMILY SSF88659 566 668 5.23E-26 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 Pfam PF04545 Sigma-70, region 4 604 657 1.4E-18 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 Gene3D G3DSA:1.10.10.10 599 669 1.9E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 PRINTS PR00046 Major sigma-70 factor signature 460 473 6.0E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 PRINTS PR00046 Major sigma-70 factor signature 484 492 6.0E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 PRINTS PR00046 Major sigma-70 factor signature 608 620 6.0E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 PRINTS PR00046 Major sigma-70 factor signature 629 644 6.0E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 PRINTS PR00046 Major sigma-70 factor signature 644 655 6.0E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 Pfam PF00140 Sigma-70 factor, region 1.2 122 154 1.7E-13 T 22-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 432 668 1.0E-118 T 22-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 460 473 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 Pfam PF03979 Sigma-70 factor, region 1.1 28 93 7.8E-21 T 22-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 Pfam PF04542 Sigma-70 region 2 436 505 1.9E-21 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 Pfam PF04539 Sigma-70 region 3 515 590 2.5E-27 T 22-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 18 669 44.207 T 22-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 629 655 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 Pfam PF04546 Sigma-70, non-essential region 164 404 1.2E-36 T 22-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 433 657 2.8E-38 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 Gene3D G3DSA:1.10.601.10 136 505 4.1E-125 T 22-04-2016 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 PANTHER PTHR30603:SF0 387 669 1.6E-222 T 22-04-2016 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 PANTHER PTHR30603:SF0 28 176 1.6E-222 T 22-04-2016 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 SUPERFAMILY SSF88659 509 582 2.75E-20 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 Gene3D G3DSA:1.10.10.10 509 560 5.6E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 PANTHER PTHR30603 387 669 1.6E-222 T 22-04-2016 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 PANTHER PTHR30603 28 176 1.6E-222 T 22-04-2016 RM11_RS04555 488ebb59e9b7e84a3499bfc90610c79b 670 SUPERFAMILY SSF88946 139 503 3.61E-96 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 PRINTS PR01576 Peptide deformylase signature 92 103 2.2E-36 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 PRINTS PR01576 Peptide deformylase signature 33 62 2.2E-36 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 PRINTS PR01576 Peptide deformylase signature 123 152 2.2E-36 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 PRINTS PR01576 Peptide deformylase signature 104 122 2.2E-36 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 SUPERFAMILY SSF56420 1 164 8.24E-63 T 22-04-2016 IPR023635 Peptide deformylase RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 Pfam PF01327 Polypeptide deformylase 4 155 1.3E-53 T 22-04-2016 IPR023635 Peptide deformylase RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 Hamap MF_00163 Peptide deformylase [def]. 2 165 31.588 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 Gene3D G3DSA:3.90.45.10 5 171 5.6E-66 T 22-04-2016 IPR023635 Peptide deformylase RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 PIRSF PIRSF004749 1 176 1.9E-57 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 159 2.9E-57 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RM11_RS00350 3ae125671832a9a952300cada6e519cc 176 PANTHER PTHR10458 1 175 5.9E-68 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 16 38 - T 22-04-2016 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 Pfam PF00186 Dihydrofolate reductase 5 168 3.8E-55 T 22-04-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 PANTHER PTHR22778:SF16 7 171 8.8E-42 T 22-04-2016 RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 PANTHER PTHR22778 7 171 8.8E-42 T 22-04-2016 RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 PIRSF PIRSF000194 1 171 2.2E-58 T 22-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 PRINTS PR00070 Dihydrofolate reductase signature 16 26 3.5E-14 T 22-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 PRINTS PR00070 Dihydrofolate reductase signature 30 38 3.5E-14 T 22-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 PRINTS PR00070 Dihydrofolate reductase signature 43 54 3.5E-14 T 22-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 PRINTS PR00070 Dihydrofolate reductase signature 100 114 3.5E-14 T 22-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 SUPERFAMILY SSF53597 5 169 3.62E-55 T 22-04-2016 IPR024072 Dihydrofolate reductase-like domain RM11_RS04315 2e003e3f355a19b480a0d9d361ed5ef7 173 Gene3D G3DSA:3.40.430.10 3 169 1.2E-56 T 22-04-2016 IPR024072 Dihydrofolate reductase-like domain RM11_RS05555 a65b7c6230a06ac399fac1fdba165e7a 72 Gene3D G3DSA:2.40.50.140 1 72 5.0E-39 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS05555 a65b7c6230a06ac399fac1fdba165e7a 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 2.2E-33 T 22-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RM11_RS05555 a65b7c6230a06ac399fac1fdba165e7a 72 SUPERFAMILY SSF50249 1 71 2.94E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS05555 a65b7c6230a06ac399fac1fdba165e7a 72 PANTHER PTHR33370 1 72 1.5E-37 T 22-04-2016 RM11_RS05555 a65b7c6230a06ac399fac1fdba165e7a 72 Pfam PF01176 Translation initiation factor 1A / IF-1 8 70 6.6E-27 T 22-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RM11_RS05555 a65b7c6230a06ac399fac1fdba165e7a 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.421 T 22-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RM11_RS02060 a82c47f19e13e7e49e7694c0fdfeebc1 285 Pfam PF13505 Outer membrane protein beta-barrel domain 33 285 3.1E-16 T 22-04-2016 IPR027385 Outer membrane protein beta-barrel RM11_RS02060 a82c47f19e13e7e49e7694c0fdfeebc1 285 SUPERFAMILY SSF56925 169 285 2.2E-29 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS02060 a82c47f19e13e7e49e7694c0fdfeebc1 285 SUPERFAMILY SSF56925 39 118 2.2E-29 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS02060 a82c47f19e13e7e49e7694c0fdfeebc1 285 Gene3D G3DSA:2.40.160.20 175 285 1.8E-47 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS02060 a82c47f19e13e7e49e7694c0fdfeebc1 285 Gene3D G3DSA:2.40.160.20 40 121 1.8E-47 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS02060 a82c47f19e13e7e49e7694c0fdfeebc1 285 PANTHER PTHR34001 1 97 1.2E-19 T 22-04-2016 RM11_RS02060 a82c47f19e13e7e49e7694c0fdfeebc1 285 PANTHER PTHR34001 139 285 1.2E-19 T 22-04-2016 RM11_RS01515 2190809410102e66c03b777c0225e63d 261 PANTHER PTHR11907:SF9 25 254 1.4E-39 T 22-04-2016 RM11_RS01515 2190809410102e66c03b777c0225e63d 261 PANTHER PTHR11907 25 254 1.4E-39 T 22-04-2016 RM11_RS01515 2190809410102e66c03b777c0225e63d 261 Gene3D G3DSA:3.40.50.2020 100 250 1.3E-23 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RM11_RS01515 2190809410102e66c03b777c0225e63d 261 Pfam PF00156 Phosphoribosyl transferase domain 190 247 1.2E-6 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RM11_RS01515 2190809410102e66c03b777c0225e63d 261 SUPERFAMILY SSF53271 78 248 1.57E-27 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RM11_RS04790 27eb267f6a09a7b18ed733199f28a4ca 306 Pfam PF01925 Sulfite exporter TauE/SafE 18 286 3.4E-47 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RM11_RS04790 27eb267f6a09a7b18ed733199f28a4ca 306 PANTHER PTHR30269 10 296 4.3E-74 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RM11_RS04790 27eb267f6a09a7b18ed733199f28a4ca 306 PANTHER PTHR30269:SF15 10 296 4.3E-74 T 22-04-2016 RM11_RS06180 fe581989f0a0839acb8d6c2ad6e3e876 494 SUPERFAMILY SSF56954 12 472 1.24E-104 T 22-04-2016 RM11_RS06180 fe581989f0a0839acb8d6c2ad6e3e876 494 PANTHER PTHR30203:SF3 1 488 1.9E-120 T 22-04-2016 RM11_RS06180 fe581989f0a0839acb8d6c2ad6e3e876 494 PANTHER PTHR30203 1 488 1.9E-120 T 22-04-2016 RM11_RS06180 fe581989f0a0839acb8d6c2ad6e3e876 494 Gene3D G3DSA:1.20.1600.10 58 471 9.3E-104 T 22-04-2016 RM11_RS06180 fe581989f0a0839acb8d6c2ad6e3e876 494 Pfam PF02321 Outer membrane efflux protein 291 467 9.6E-21 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RM11_RS06180 fe581989f0a0839acb8d6c2ad6e3e876 494 Pfam PF02321 Outer membrane efflux protein 74 254 2.2E-24 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RM11_RS06180 fe581989f0a0839acb8d6c2ad6e3e876 494 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 22 469 1.9E-106 T 22-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 Gene3D G3DSA:3.30.559.10 204 438 4.0E-82 T 22-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 Pfam PF00364 Biotin-requiring enzyme 4 77 1.3E-20 T 22-04-2016 IPR000089 Biotin/lipoyl attachment RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 PANTHER PTHR23151:SF9 4 439 5.0E-175 T 22-04-2016 RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 SUPERFAMILY SSF51230 1 94 4.19E-28 T 22-04-2016 IPR011053 Single hybrid motif RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 Gene3D G3DSA:2.40.50.100 1 93 5.4E-32 T 22-04-2016 RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 SUPERFAMILY SSF47005 126 171 3.79E-11 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 SUPERFAMILY SSF52777 204 438 1.51E-71 T 22-04-2016 RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 Gene3D G3DSA:4.10.320.10 125 172 4.0E-17 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 Pfam PF02817 e3 binding domain 133 166 1.9E-13 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 204 438 7.1E-73 T 22-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 PANTHER PTHR23151 4 439 5.0E-175 T 22-04-2016 RM11_RS02530 8f32b0004e36992dfc8e1ac33fd9867f 439 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4 439 7.8E-161 T 22-04-2016 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 RM11_RS02310 493de9a17d1e1317013b63d21e909fea 195 SMART SM00014 58 167 5.2E-13 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RM11_RS02310 493de9a17d1e1317013b63d21e909fea 195 PANTHER PTHR14969:SF20 7 163 2.4E-16 T 22-04-2016 RM11_RS02310 493de9a17d1e1317013b63d21e909fea 195 Pfam PF01569 PAP2 superfamily 60 169 9.9E-17 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RM11_RS02310 493de9a17d1e1317013b63d21e909fea 195 SUPERFAMILY SSF48317 1 190 1.83E-37 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RM11_RS02310 493de9a17d1e1317013b63d21e909fea 195 Gene3D G3DSA:1.20.144.10 39 168 1.5E-21 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RM11_RS02310 493de9a17d1e1317013b63d21e909fea 195 PANTHER PTHR14969 7 163 2.4E-16 T 22-04-2016 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 PIRSF PIRSF000349 1 199 1.4E-71 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 160 167 - T 22-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 PANTHER PTHR11404 1 196 7.8E-94 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 SUPERFAMILY SSF54719 88 196 1.31E-39 T 22-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 Gene3D G3DSA:1.10.287.990 20 85 8.8E-17 T 22-04-2016 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 85 1.8E-25 T 22-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 SUPERFAMILY SSF46609 1 90 1.7E-27 T 22-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 PANTHER PTHR11404:SF8 1 196 7.8E-94 T 22-04-2016 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 PRINTS PR01703 Manganese superoxide dismutase signature 122 130 4.4E-21 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 PRINTS PR01703 Manganese superoxide dismutase signature 158 170 4.4E-21 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.4E-21 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 PRINTS PR01703 Manganese superoxide dismutase signature 68 81 4.4E-21 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.4E-21 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS01965 3d67bb54eb7c60f0fdea02d86ae536f4 200 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 95 191 2.4E-34 T 22-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RM11_RS04830 4db237c62e2615225c74f07272d3da76 295 PANTHER PTHR21091 19 213 1.0E-76 T 22-04-2016 RM11_RS04830 4db237c62e2615225c74f07272d3da76 295 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 21 241 36.895 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS04830 4db237c62e2615225c74f07272d3da76 295 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 22 221 7.9E-33 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RM11_RS04830 4db237c62e2615225c74f07272d3da76 295 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 22 287 2.7E-79 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS04830 4db237c62e2615225c74f07272d3da76 295 SUPERFAMILY SSF53790 20 239 7.33E-80 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RM11_RS04830 4db237c62e2615225c74f07272d3da76 295 PANTHER PTHR21091:SF18 19 213 1.0E-76 T 22-04-2016 RM11_RS04830 4db237c62e2615225c74f07272d3da76 295 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 99 110 - T 22-04-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS04830 4db237c62e2615225c74f07272d3da76 295 PIRSF PIRSF005917 12 294 3.8E-97 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS04830 4db237c62e2615225c74f07272d3da76 295 Gene3D G3DSA:3.40.1010.10 22 129 1.5E-16 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RM11_RS04830 4db237c62e2615225c74f07272d3da76 295 Gene3D G3DSA:3.30.950.10 130 242 5.5E-37 T 22-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RM11_RS02345 dd72f0b85d707290a89f4e026b7ac2f1 276 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 18 276 49.959 T 22-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RM11_RS02345 dd72f0b85d707290a89f4e026b7ac2f1 276 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 50 77 - T 22-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RM11_RS02345 dd72f0b85d707290a89f4e026b7ac2f1 276 Gene3D G3DSA:1.10.8.100 215 275 6.0E-23 T 22-04-2016 IPR023165 rRNA adenine dimethylase-like RM11_RS02345 dd72f0b85d707290a89f4e026b7ac2f1 276 PANTHER PTHR11727 1 274 2.2E-90 T 22-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RM11_RS02345 dd72f0b85d707290a89f4e026b7ac2f1 276 Pfam PF00398 Ribosomal RNA adenine dimethylase 19 274 6.4E-43 T 22-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RM11_RS02345 dd72f0b85d707290a89f4e026b7ac2f1 276 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 19 274 2.7E-68 T 22-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RM11_RS02345 dd72f0b85d707290a89f4e026b7ac2f1 276 SMART SM00650 34 211 1.6E-61 T 22-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RM11_RS02345 dd72f0b85d707290a89f4e026b7ac2f1 276 Gene3D G3DSA:3.40.50.150 4 210 7.3E-64 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS02345 dd72f0b85d707290a89f4e026b7ac2f1 276 SUPERFAMILY SSF53335 17 275 1.37E-70 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS04380 c8c2ba7a9607625d89ec63fc1d881ac3 553 PANTHER PTHR11059 2 553 2.7E-140 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RM11_RS04380 c8c2ba7a9607625d89ec63fc1d881ac3 553 Gene3D G3DSA:3.40.50.300 312 535 2.8E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04380 c8c2ba7a9607625d89ec63fc1d881ac3 553 Pfam PF02463 RecF/RecN/SMC N terminal domain 13 508 1.4E-16 T 22-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RM11_RS04380 c8c2ba7a9607625d89ec63fc1d881ac3 553 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 8.9E-148 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RM11_RS04380 c8c2ba7a9607625d89ec63fc1d881ac3 553 SUPERFAMILY SSF52540 2 50 4.54E-29 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04380 c8c2ba7a9607625d89ec63fc1d881ac3 553 SUPERFAMILY SSF52540 295 504 4.54E-29 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04380 c8c2ba7a9607625d89ec63fc1d881ac3 553 SUPERFAMILY SSF52540 1 214 7.21E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04380 c8c2ba7a9607625d89ec63fc1d881ac3 553 PIRSF PIRSF003128 1 553 1.6E-156 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RM11_RS04380 c8c2ba7a9607625d89ec63fc1d881ac3 553 Gene3D G3DSA:3.40.50.300 1 206 5.1E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01550 ecdc9ea121a2d41cabfc5286e11058a5 223 SUPERFAMILY SSF48452 160 194 7.59E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS01550 ecdc9ea121a2d41cabfc5286e11058a5 223 SUPERFAMILY SSF48452 69 120 7.59E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS01550 ecdc9ea121a2d41cabfc5286e11058a5 223 Pfam PF09976 Tetratricopeptide repeat-like domain 21 191 1.2E-14 T 22-04-2016 IPR018704 Tetratricopeptide repeat-like domain RM11_RS03315 81c02cafa8d843d1af50474f44e9c13c 283 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 46 169 5.2E-38 T 22-04-2016 IPR007621 TPM domain RM11_RS03315 81c02cafa8d843d1af50474f44e9c13c 283 PANTHER PTHR30373:SF2 41 225 1.5E-52 T 22-04-2016 RM11_RS03315 81c02cafa8d843d1af50474f44e9c13c 283 PANTHER PTHR30373 41 225 1.5E-52 T 22-04-2016 RM11_RS06250 87001b67c742f2f061e5ebdbca172704 105 Pfam PF04956 TrbC/VIRB2 family 1 102 5.7E-23 T 22-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 Gene3D G3DSA:3.40.50.980 77 266 2.5E-44 T 22-04-2016 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 Gene3D G3DSA:2.30.38.10 439 516 8.9E-10 T 22-04-2016 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 23 79 1.6E-19 T 22-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 Gene3D G3DSA:3.30.300.30 518 638 6.1E-26 T 22-04-2016 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 Gene3D G3DSA:3.40.50.980 267 425 2.6E-26 T 22-04-2016 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 PANTHER PTHR24095:SF178 11 649 0.0 T 22-04-2016 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 19 643 1.1E-304 T 22-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 645 51.263 T 22-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 PANTHER PTHR24095 11 649 0.0 T 22-04-2016 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 SUPERFAMILY SSF56801 10 644 1.06E-177 T 22-04-2016 RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 22-04-2016 IPR020845 AMP-binding, conserved site RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 5.4E-24 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RM11_RS06140 411e0e15704260c5dd4ba38abdad660e 652 Pfam PF00501 AMP-binding enzyme 82 522 3.6E-91 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RM11_RS06630 1415d0b3f8fc0be561e2a55509613a3f 131 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 46 115 3.7E-12 T 22-04-2016 IPR018660 C-type lysozyme, inhibitor RM11_RS06630 1415d0b3f8fc0be561e2a55509613a3f 131 SUPERFAMILY SSF141488 40 124 1.2E-18 T 22-04-2016 IPR018660 C-type lysozyme, inhibitor RM11_RS06630 1415d0b3f8fc0be561e2a55509613a3f 131 Gene3D G3DSA:3.30.1120.10 96 122 1.7E-4 T 22-04-2016 RM11_RS03775 48c4f676b9483b5aaff2a6cba0e0cda1 422 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 21 398 1.7E-65 T 22-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 RM11_RS03775 48c4f676b9483b5aaff2a6cba0e0cda1 422 PANTHER PTHR23502 23 406 2.7E-97 T 22-04-2016 RM11_RS03775 48c4f676b9483b5aaff2a6cba0e0cda1 422 Pfam PF07690 Major Facilitator Superfamily 29 368 1.9E-41 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RM11_RS03775 48c4f676b9483b5aaff2a6cba0e0cda1 422 PANTHER PTHR23502:SF19 23 406 2.7E-97 T 22-04-2016 RM11_RS03775 48c4f676b9483b5aaff2a6cba0e0cda1 422 SUPERFAMILY SSF103473 13 402 2.22E-56 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS03775 48c4f676b9483b5aaff2a6cba0e0cda1 422 Gene3D G3DSA:1.20.1250.20 24 208 3.3E-34 T 22-04-2016 RM11_RS06590 76ff3455baef82073638b8c5334f610d 365 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 21 244 7.8E-58 T 22-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RM11_RS06590 76ff3455baef82073638b8c5334f610d 365 SUPERFAMILY SSF56601 9 261 1.83E-62 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS06590 76ff3455baef82073638b8c5334f610d 365 Gene3D G3DSA:3.40.710.10 23 261 6.4E-77 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS06590 76ff3455baef82073638b8c5334f610d 365 PANTHER PTHR21581 23 261 3.0E-62 T 22-04-2016 RM11_RS06590 76ff3455baef82073638b8c5334f610d 365 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 129 142 1.9E-13 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RM11_RS06590 76ff3455baef82073638b8c5334f610d 365 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 49 60 1.9E-13 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RM11_RS06590 76ff3455baef82073638b8c5334f610d 365 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 102 119 1.9E-13 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RM11_RS06590 76ff3455baef82073638b8c5334f610d 365 PANTHER PTHR21581:SF3 23 261 3.0E-62 T 22-04-2016 RM11_RS05610 38b07adee0546c97e83ea32f6b473c9e 392 SUPERFAMILY SSF56059 133 333 1.94E-55 T 22-04-2016 RM11_RS05610 38b07adee0546c97e83ea32f6b473c9e 392 Pfam PF02222 ATP-grasp domain 141 313 9.5E-49 T 22-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 RM11_RS05610 38b07adee0546c97e83ea32f6b473c9e 392 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 38 381 8.1E-111 T 22-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RM11_RS05610 38b07adee0546c97e83ea32f6b473c9e 392 SUPERFAMILY SSF52440 28 131 7.63E-28 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS05610 38b07adee0546c97e83ea32f6b473c9e 392 PANTHER PTHR11609 18 380 4.1E-120 T 22-04-2016 RM11_RS05610 38b07adee0546c97e83ea32f6b473c9e 392 Gene3D G3DSA:3.30.470.20 173 384 3.8E-73 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS05610 38b07adee0546c97e83ea32f6b473c9e 392 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 37 387 39.337 T 22-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RM11_RS05610 38b07adee0546c97e83ea32f6b473c9e 392 PANTHER PTHR11609:SF5 18 380 4.1E-120 T 22-04-2016 RM11_RS05610 38b07adee0546c97e83ea32f6b473c9e 392 SUPERFAMILY SSF51246 337 388 8.63E-11 T 22-04-2016 IPR011054 Rudiment single hybrid motif RM11_RS05610 38b07adee0546c97e83ea32f6b473c9e 392 Gene3D G3DSA:3.40.50.20 29 141 2.3E-34 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS03375 bd8754494ca38406a88a57374a95856f 512 Gene3D G3DSA:1.10.275.10 2 196 9.8E-66 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal RM11_RS03375 bd8754494ca38406a88a57374a95856f 512 PANTHER PTHR10362 2 501 2.8E-207 T 22-04-2016 RM11_RS03375 bd8754494ca38406a88a57374a95856f 512 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 138 154 - T 22-04-2016 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 RM11_RS03375 bd8754494ca38406a88a57374a95856f 512 Gene3D G3DSA:1.20.200.10 197 505 3.4E-113 T 22-04-2016 RM11_RS03375 bd8754494ca38406a88a57374a95856f 512 Pfam PF00221 Aromatic amino acid lyase 11 471 1.7E-169 T 22-04-2016 IPR001106 Aromatic amino acid lyase RM11_RS03375 bd8754494ca38406a88a57374a95856f 512 PANTHER PTHR10362:SF7 2 501 2.8E-207 T 22-04-2016 RM11_RS03375 bd8754494ca38406a88a57374a95856f 512 SUPERFAMILY SSF48557 2 503 4.55E-177 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 RM11_RS03375 bd8754494ca38406a88a57374a95856f 512 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 3 503 9.6E-205 T 22-04-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RM11_RS03375 bd8754494ca38406a88a57374a95856f 512 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 2 504 42.919 T 22-04-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RM11_RS03390 32e765c8b6445a43cb63ce517bf9ddda 467 Gene3D G3DSA:3.40.50.300 3 215 5.7E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03390 32e765c8b6445a43cb63ce517bf9ddda 467 SUPERFAMILY SSF52540 78 367 1.09E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03390 32e765c8b6445a43cb63ce517bf9ddda 467 Gene3D G3DSA:3.40.50.300 216 376 2.8E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03390 32e765c8b6445a43cb63ce517bf9ddda 467 SMART SM00490 265 346 1.6E-28 T 22-04-2016 IPR001650 Helicase, C-terminal RM11_RS03390 32e765c8b6445a43cb63ce517bf9ddda 467 Pfam PF00271 Helicase conserved C-terminal domain 236 346 5.1E-28 T 22-04-2016 IPR001650 Helicase, C-terminal RM11_RS03390 32e765c8b6445a43cb63ce517bf9ddda 467 Pfam PF00270 DEAD/DEAH box helicase 30 198 2.9E-48 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RM11_RS03390 32e765c8b6445a43cb63ce517bf9ddda 467 PANTHER PTHR24031 5 375 9.9E-167 T 22-04-2016 RM11_RS03390 32e765c8b6445a43cb63ce517bf9ddda 467 PANTHER PTHR24031:SF261 5 375 9.9E-167 T 22-04-2016 RM11_RS03390 32e765c8b6445a43cb63ce517bf9ddda 467 SMART SM00487 25 225 2.2E-62 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RM11_RS03390 32e765c8b6445a43cb63ce517bf9ddda 467 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 156 164 - T 22-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 SUPERFAMILY SSF53448 7 253 1.89E-50 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 7 436 6.8E-143 T 22-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 Gene3D G3DSA:2.160.10.10 258 423 1.5E-40 T 22-04-2016 RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 Pfam PF12804 MobA-like NTP transferase domain 7 133 2.1E-17 T 22-04-2016 IPR025877 MobA-like NTP transferase RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 Gene3D G3DSA:3.90.550.10 6 251 3.9E-54 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 SUPERFAMILY SSF51161 252 430 9.43E-47 T 22-04-2016 IPR011004 Trimeric LpxA-like RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 PANTHER PTHR22572 5 433 1.6E-162 T 22-04-2016 RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 379 412 1.7E-6 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 301 335 1.3E-5 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 266 300 6.0E-4 T 22-04-2016 IPR001451 Hexapeptide repeat RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 3 436 37.104 T 22-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 PANTHER PTHR22572:SF115 5 433 1.6E-162 T 22-04-2016 RM11_RS03830 a92ddd02667bf5e4f81ed9b17aae3e41 448 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 387 415 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RM11_RS05775 437bbc516a1be2855fce185b9c9e6e6b 190 Pfam PF02600 Disulfide bond formation protein DsbB 25 177 2.6E-21 T 22-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 RM11_RS05775 437bbc516a1be2855fce185b9c9e6e6b 190 PIRSF PIRSF033913 15 182 3.1E-42 T 22-04-2016 IPR024199 Uncharacterised conserved protein, DsbB-like RM11_RS05775 437bbc516a1be2855fce185b9c9e6e6b 190 SUPERFAMILY SSF158442 28 178 2.48E-24 T 22-04-2016 RM11_RS05775 437bbc516a1be2855fce185b9c9e6e6b 190 Gene3D G3DSA:1.20.1550.10 21 179 8.3E-11 T 22-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain RM11_RS00825 d7171acc8651c44723519a8d6d06a9fc 523 Gene3D G3DSA:3.30.870.10 70 246 1.4E-37 T 22-04-2016 RM11_RS00825 d7171acc8651c44723519a8d6d06a9fc 523 Gene3D G3DSA:3.30.870.10 297 486 1.2E-36 T 22-04-2016 RM11_RS00825 d7171acc8651c44723519a8d6d06a9fc 523 Pfam PF13091 PLD-like domain 325 465 1.3E-20 T 22-04-2016 IPR025202 Phospholipase D-like domain RM11_RS00825 d7171acc8651c44723519a8d6d06a9fc 523 Pfam PF13091 PLD-like domain 89 236 2.7E-17 T 22-04-2016 IPR025202 Phospholipase D-like domain RM11_RS00825 d7171acc8651c44723519a8d6d06a9fc 523 PANTHER PTHR21248:SF12 70 509 1.4E-122 T 22-04-2016 RM11_RS00825 d7171acc8651c44723519a8d6d06a9fc 523 SMART SM00155 413 440 2.0E-5 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RM11_RS00825 d7171acc8651c44723519a8d6d06a9fc 523 SMART SM00155 177 204 1.2E-5 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RM11_RS00825 d7171acc8651c44723519a8d6d06a9fc 523 SUPERFAMILY SSF56024 293 464 4.71E-33 T 22-04-2016 RM11_RS00825 d7171acc8651c44723519a8d6d06a9fc 523 PANTHER PTHR21248 70 509 1.4E-122 T 22-04-2016 RM11_RS00825 d7171acc8651c44723519a8d6d06a9fc 523 SUPERFAMILY SSF56024 88 250 6.54E-38 T 22-04-2016 RM11_RS04285 dbbee0633f15fc3d798700de76bd940c 373 SUPERFAMILY SSF52540 136 372 3.65E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04285 dbbee0633f15fc3d798700de76bd940c 373 SUPERFAMILY SSF52540 3 151 4.69E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04285 dbbee0633f15fc3d798700de76bd940c 373 Gene3D G3DSA:3.40.50.300 136 239 1.2E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04285 dbbee0633f15fc3d798700de76bd940c 373 Gene3D G3DSA:3.40.50.300 313 372 1.2E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04285 dbbee0633f15fc3d798700de76bd940c 373 Pfam PF13538 UvrD-like helicase C-terminal domain 324 372 6.4E-21 T 22-04-2016 IPR027785 UvrD-like helicase C-terminal domain RM11_RS04285 dbbee0633f15fc3d798700de76bd940c 373 Pfam PF13604 AAA domain 4 197 3.2E-25 T 22-04-2016 RM11_RS04285 dbbee0633f15fc3d798700de76bd940c 373 Gene3D G3DSA:3.40.50.300 8 133 1.1E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04335 481f21b5855d10b9494b15f154437ee6 101 Gene3D G3DSA:1.10.238.120 1 100 4.5E-33 T 22-04-2016 IPR023154 Jann4075-like domain RM11_RS04335 481f21b5855d10b9494b15f154437ee6 101 Pfam PF11015 Protein of unknown function (DUF2853) 5 97 1.7E-21 T 22-04-2016 IPR021274 Protein of unknown function DUF2853 RM11_RS04335 481f21b5855d10b9494b15f154437ee6 101 SUPERFAMILY SSF158587 1 100 3.92E-28 T 22-04-2016 IPR023154 Jann4075-like domain RM11_RS00590 d4fb88b1e2401250e403b6ab835794fe 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 253 7.8E-84 T 22-04-2016 RM11_RS00590 d4fb88b1e2401250e403b6ab835794fe 272 PIRSF PIRSF000094 2 261 1.7E-110 T 22-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RM11_RS00590 d4fb88b1e2401250e403b6ab835794fe 272 PANTHER PTHR24322 160 192 3.6E-54 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS00590 d4fb88b1e2401250e403b6ab835794fe 272 PANTHER PTHR24322 12 144 3.6E-54 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS00590 d4fb88b1e2401250e403b6ab835794fe 272 SUPERFAMILY SSF51735 7 256 1.63E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00590 d4fb88b1e2401250e403b6ab835794fe 272 PANTHER PTHR24322:SF317 160 192 3.6E-54 T 22-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RM11_RS00590 d4fb88b1e2401250e403b6ab835794fe 272 PANTHER PTHR24322:SF317 12 144 3.6E-54 T 22-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RM11_RS00590 d4fb88b1e2401250e403b6ab835794fe 272 Gene3D G3DSA:3.40.50.720 8 202 7.2E-66 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02710 eebc5622104590660c687851a720f658 769 Gene3D G3DSA:3.40.50.720 172 456 8.2E-85 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02710 eebc5622104590660c687851a720f658 769 Pfam PF00390 Malic enzyme, N-terminal domain 30 162 5.3E-28 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RM11_RS02710 eebc5622104590660c687851a720f658 769 SMART SM00919 174 411 8.9E-135 T 22-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RM11_RS02710 eebc5622104590660c687851a720f658 769 Pfam PF03949 Malic enzyme, NAD binding domain 176 370 2.8E-19 T 22-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RM11_RS02710 eebc5622104590660c687851a720f658 769 Gene3D G3DSA:3.40.50.10750 580 736 7.0E-53 T 22-04-2016 RM11_RS02710 eebc5622104590660c687851a720f658 769 SUPERFAMILY SSF51735 174 450 9.61E-84 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02710 eebc5622104590660c687851a720f658 769 PIRSF PIRSF036684 10 768 0.0 T 22-04-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 RM11_RS02710 eebc5622104590660c687851a720f658 769 Pfam PF01515 Phosphate acetyl/butaryl transferase 441 761 1.9E-91 T 22-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RM11_RS02710 eebc5622104590660c687851a720f658 769 Gene3D G3DSA:3.40.50.10380 20 171 2.5E-52 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RM11_RS02710 eebc5622104590660c687851a720f658 769 PANTHER PTHR23406:SF23 41 366 2.0E-161 T 22-04-2016 RM11_RS02710 eebc5622104590660c687851a720f658 769 PANTHER PTHR23406:SF23 383 453 2.0E-161 T 22-04-2016 RM11_RS02710 eebc5622104590660c687851a720f658 769 SUPERFAMILY SSF53659 440 765 3.54E-86 T 22-04-2016 RM11_RS02710 eebc5622104590660c687851a720f658 769 PANTHER PTHR23406 41 366 2.0E-161 T 22-04-2016 RM11_RS02710 eebc5622104590660c687851a720f658 769 PANTHER PTHR23406 383 453 2.0E-161 T 22-04-2016 RM11_RS02710 eebc5622104590660c687851a720f658 769 SMART SM01274 29 162 4.8E-81 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RM11_RS02710 eebc5622104590660c687851a720f658 769 SUPERFAMILY SSF53223 21 172 5.11E-54 T 22-04-2016 RM11_RS00765 a2183665f44c58d194a70a6032519909 97 PANTHER PTHR33219:SF5 1 95 5.3E-17 T 22-04-2016 RM11_RS00765 a2183665f44c58d194a70a6032519909 97 Pfam PF02325 YGGT family 11 87 4.5E-20 T 22-04-2016 IPR003425 CCB3/YggT GO:0016020 RM11_RS00765 a2183665f44c58d194a70a6032519909 97 PANTHER PTHR33219 1 95 5.3E-17 T 22-04-2016 RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 SUPERFAMILY SSF52540 405 713 1.78E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 Pfam PF09397 Ftsk gamma domain 746 805 6.0E-26 T 22-04-2016 IPR018541 FtsK gamma domain RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 SMART SM00843 743 808 2.4E-36 T 22-04-2016 IPR018541 FtsK gamma domain RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 PANTHER PTHR22683:SF41 303 809 4.2E-226 T 22-04-2016 RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 Pfam PF01580 FtsK/SpoIIIE family 424 643 1.2E-62 T 22-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 PANTHER PTHR22683 303 809 4.2E-226 T 22-04-2016 RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 SMART SM00382 459 664 2.3E-4 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 32 188 1.2E-18 T 22-04-2016 IPR025199 DNA translocase FtsK, 4TM region RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 SUPERFAMILY SSF46785 744 808 3.46E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 Gene3D G3DSA:3.40.50.300 596 708 2.5E-95 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06195 0b3ece47876d0f67cb5f6d7a0831c424 812 Gene3D G3DSA:3.40.50.300 401 563 2.5E-95 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00085 96fad2c33b9ce122b465ec83ef07ff73 264 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 27 264 2.9E-114 T 22-04-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 RM11_RS00085 96fad2c33b9ce122b465ec83ef07ff73 264 PANTHER PTHR24220:SF497 29 261 5.7E-133 T 22-04-2016 RM11_RS00085 96fad2c33b9ce122b465ec83ef07ff73 264 SUPERFAMILY SSF52540 28 259 1.22E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00085 96fad2c33b9ce122b465ec83ef07ff73 264 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS00085 96fad2c33b9ce122b465ec83ef07ff73 264 PANTHER PTHR24220 29 261 5.7E-133 T 22-04-2016 RM11_RS00085 96fad2c33b9ce122b465ec83ef07ff73 264 Pfam PF00005 ABC transporter 44 189 3.1E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS00085 96fad2c33b9ce122b465ec83ef07ff73 264 SMART SM00382 52 239 8.8E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS00085 96fad2c33b9ce122b465ec83ef07ff73 264 Gene3D G3DSA:3.40.50.300 26 255 4.4E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04305 4fb7ef90f8cdac5d879f0f0dc93805d5 315 PANTHER PTHR10264:SF80 5 285 2.9E-49 T 22-04-2016 RM11_RS04305 4fb7ef90f8cdac5d879f0f0dc93805d5 315 PIRSF PIRSF005651 1 292 1.2E-60 T 22-04-2016 IPR010200 HflC GO:0016021|GO:0052547 RM11_RS04305 4fb7ef90f8cdac5d879f0f0dc93805d5 315 SUPERFAMILY SSF117892 54 193 2.09E-23 T 22-04-2016 IPR001107 Band 7 domain RM11_RS04305 4fb7ef90f8cdac5d879f0f0dc93805d5 315 PANTHER PTHR10264 5 285 2.9E-49 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RM11_RS04305 4fb7ef90f8cdac5d879f0f0dc93805d5 315 Pfam PF01145 SPFH domain / Band 7 family 30 203 3.3E-25 T 22-04-2016 IPR001107 Band 7 domain RM11_RS04305 4fb7ef90f8cdac5d879f0f0dc93805d5 315 SMART SM00244 22 187 4.5E-18 T 22-04-2016 IPR001107 Band 7 domain RM11_RS03160 16387182a5378ebecb0c382ec34a9f47 172 Pfam PF02643 Uncharacterized ACR, COG1430 51 158 1.8E-23 T 22-04-2016 IPR003795 Protein of unknown function DUF192 RM11_RS03160 16387182a5378ebecb0c382ec34a9f47 172 PANTHER PTHR37953:SF1 1 167 7.0E-24 T 22-04-2016 RM11_RS03160 16387182a5378ebecb0c382ec34a9f47 172 PANTHER PTHR37953 1 167 7.0E-24 T 22-04-2016 RM11_RS05890 d485aeb2c561df1182f393bb8cc2c8a2 237 PANTHER PTHR30625:SF3 14 233 2.5E-64 T 22-04-2016 RM11_RS05890 d485aeb2c561df1182f393bb8cc2c8a2 237 PANTHER PTHR30625 14 233 2.5E-64 T 22-04-2016 RM11_RS05890 d485aeb2c561df1182f393bb8cc2c8a2 237 TIGRFAM TIGR02796 tolQ: protein TolQ 14 225 2.0E-83 T 22-04-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 RM11_RS05890 d485aeb2c561df1182f393bb8cc2c8a2 237 Pfam PF01618 MotA/TolQ/ExbB proton channel family 83 213 4.1E-36 T 22-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 PANTHER PTHR23135:SF3 14 466 2.7E-118 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 Pfam PF02875 Mur ligase family, glutamate ligase domain 337 408 2.3E-9 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 Gene3D G3DSA:3.40.1190.10 97 319 4.9E-60 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 Pfam PF01225 Mur ligase family, catalytic domain 26 101 2.9E-14 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 Gene3D G3DSA:3.90.190.20 336 467 2.8E-31 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 SUPERFAMILY SSF53244 336 464 4.81E-30 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 PANTHER PTHR23135 14 466 2.7E-118 T 22-04-2016 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 31 464 4.9E-108 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 Pfam PF08245 Mur ligase middle domain 112 302 8.6E-43 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 SUPERFAMILY SSF63418 18 103 2.22E-22 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 Gene3D G3DSA:3.40.1390.10 19 96 1.1E-22 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 SUPERFAMILY SSF53623 107 319 6.8E-48 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04445 bab5a7dd4db84a061a3fd623c886aef3 473 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 1 465 30.05 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS00295 96fed06d69bdde1dfd900ebdcca021f2 151 Gene3D G3DSA:3.10.350.10 94 146 3.4E-9 T 22-04-2016 IPR018392 LysM domain RM11_RS00295 96fed06d69bdde1dfd900ebdcca021f2 151 SMART SM00257 95 146 9.9E-9 T 22-04-2016 IPR018392 LysM domain RM11_RS00295 96fed06d69bdde1dfd900ebdcca021f2 151 PANTHER PTHR34700 57 150 1.1E-15 T 22-04-2016 RM11_RS00295 96fed06d69bdde1dfd900ebdcca021f2 151 Pfam PF04972 BON domain 34 85 1.7E-8 T 22-04-2016 IPR007055 BON domain RM11_RS00295 96fed06d69bdde1dfd900ebdcca021f2 151 Pfam PF01476 LysM domain 96 146 9.3E-11 T 22-04-2016 IPR018392 LysM domain RM11_RS00295 96fed06d69bdde1dfd900ebdcca021f2 151 SUPERFAMILY SSF54106 94 146 7.85E-7 T 22-04-2016 IPR018392 LysM domain RM11_RS06540 e2b7d3f2baedbb1a5faee1e2d2c6f134 284 Pfam PF03631 Virulence factor BrkB 22 272 5.2E-39 T 22-04-2016 IPR017039 Virulence factor BrkB RM11_RS06540 e2b7d3f2baedbb1a5faee1e2d2c6f134 284 PANTHER PTHR30213:SF1 10 272 5.8E-36 T 22-04-2016 RM11_RS06540 e2b7d3f2baedbb1a5faee1e2d2c6f134 284 PIRSF PIRSF035875 5 281 1.2E-58 T 22-04-2016 IPR017039 Virulence factor BrkB RM11_RS06540 e2b7d3f2baedbb1a5faee1e2d2c6f134 284 PANTHER PTHR30213 10 272 5.8E-36 T 22-04-2016 RM11_RS05015 cda8a3b2dedea8666ce7f7b6741da089 372 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 270 360 8.6E-18 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RM11_RS05015 cda8a3b2dedea8666ce7f7b6741da089 372 Gene3D G3DSA:3.30.1360.120 12 64 7.6E-46 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RM11_RS05015 cda8a3b2dedea8666ce7f7b6741da089 372 Gene3D G3DSA:3.30.1360.120 153 237 7.6E-46 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RM11_RS05015 cda8a3b2dedea8666ce7f7b6741da089 372 Gene3D G3DSA:3.30.70.1400 65 146 1.7E-23 T 22-04-2016 RM11_RS05015 cda8a3b2dedea8666ce7f7b6741da089 372 SUPERFAMILY SSF103025 12 284 1.32E-75 T 22-04-2016 RM11_RS05015 cda8a3b2dedea8666ce7f7b6741da089 372 Gene3D G3DSA:2.40.30.110 284 360 1.4E-23 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RM11_RS05015 cda8a3b2dedea8666ce7f7b6741da089 372 Pfam PF01571 Aminomethyltransferase folate-binding domain 17 260 3.4E-75 T 22-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RM11_RS05015 cda8a3b2dedea8666ce7f7b6741da089 372 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 15 366 1.6E-85 T 22-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RM11_RS05015 cda8a3b2dedea8666ce7f7b6741da089 372 SUPERFAMILY SSF101790 278 370 1.41E-23 T 22-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RM11_RS05015 cda8a3b2dedea8666ce7f7b6741da089 372 PIRSF PIRSF006487 3 372 1.1E-69 T 22-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RM11_RS01490 a767a80dc659aa2646a7d10ddf29e3c5 244 SUPERFAMILY SSF75217 79 244 1.96E-44 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases RM11_RS01490 a767a80dc659aa2646a7d10ddf29e3c5 244 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 19 243 1.9E-40 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS01490 a767a80dc659aa2646a7d10ddf29e3c5 244 PANTHER PTHR30027:SF3 9 244 2.2E-55 T 22-04-2016 RM11_RS01490 a767a80dc659aa2646a7d10ddf29e3c5 244 PIRSF PIRSF015601 6 244 1.1E-52 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS01490 a767a80dc659aa2646a7d10ddf29e3c5 244 Pfam PF04452 RNA methyltransferase 23 239 6.5E-57 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RM11_RS01490 a767a80dc659aa2646a7d10ddf29e3c5 244 SUPERFAMILY SSF88697 7 75 4.72E-16 T 22-04-2016 IPR015947 PUA-like domain RM11_RS01490 a767a80dc659aa2646a7d10ddf29e3c5 244 PANTHER PTHR30027 9 244 2.2E-55 T 22-04-2016 RM11_RS01490 a767a80dc659aa2646a7d10ddf29e3c5 244 Gene3D G3DSA:3.40.1280.10 7 244 1.7E-65 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RM11_RS06730 d94b5d4dc7fba60c1b3013c2aa6ba98c 421 Gene3D G3DSA:3.80.30.20 138 367 3.7E-64 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RM11_RS06730 d94b5d4dc7fba60c1b3013c2aa6ba98c 421 PANTHER PTHR11918:SF45 1 421 1.4E-112 T 22-04-2016 RM11_RS06730 d94b5d4dc7fba60c1b3013c2aa6ba98c 421 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 2 418 1.4E-104 T 22-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RM11_RS06730 d94b5d4dc7fba60c1b3013c2aa6ba98c 421 Pfam PF00919 Uncharacterized protein family UPF0004 3 93 1.7E-19 T 22-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RM11_RS06730 d94b5d4dc7fba60c1b3013c2aa6ba98c 421 SMART SM00729 140 358 2.2E-47 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RM11_RS06730 d94b5d4dc7fba60c1b3013c2aa6ba98c 421 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 144 164 - T 22-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RM11_RS06730 d94b5d4dc7fba60c1b3013c2aa6ba98c 421 PANTHER PTHR11918 1 421 1.4E-112 T 22-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RM11_RS06730 d94b5d4dc7fba60c1b3013c2aa6ba98c 421 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 5 404 1.4E-139 T 22-04-2016 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 RM11_RS06730 d94b5d4dc7fba60c1b3013c2aa6ba98c 421 SUPERFAMILY SSF102114 132 363 2.49E-51 T 22-04-2016 RM11_RS06730 d94b5d4dc7fba60c1b3013c2aa6ba98c 421 Pfam PF04055 Radical SAM superfamily 145 316 1.7E-22 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RM11_RS02415 bab86d906d8a5f558c28755c7eeee1ee 193 PANTHER PTHR14269 9 185 7.4E-45 T 22-04-2016 RM11_RS02415 bab86d906d8a5f558c28755c7eeee1ee 193 PIRSF PIRSF000847 3 192 4.0E-47 T 22-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RM11_RS02415 bab86d906d8a5f558c28755c7eeee1ee 193 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 8 187 4.7E-48 T 22-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RM11_RS02415 bab86d906d8a5f558c28755c7eeee1ee 193 Pfam PF01066 CDP-alcohol phosphatidyltransferase 9 79 1.1E-16 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RM11_RS02415 bab86d906d8a5f558c28755c7eeee1ee 193 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 57 79 - T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 40 505 2.1E-154 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 SUPERFAMILY SSF101904 532 743 1.03E-94 T 22-04-2016 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 SUPERFAMILY SSF101904 797 905 1.03E-94 T 22-04-2016 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Gene3D G3DSA:1.10.268.10 371 495 2.1E-39 T 22-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 799 849 1.2E-10 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 694 740 1.0E-12 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 537 584 2.7E-15 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 589 636 0.0071 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 852 899 4.7E-10 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 647 690 1.1E-8 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 PANTHER PTHR10169:SF48 16 424 0.0 T 22-04-2016 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 PANTHER PTHR10169:SF48 796 873 0.0 T 22-04-2016 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 PANTHER PTHR10169:SF48 449 741 0.0 T 22-04-2016 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 9 902 28.149 T 22-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Gene3D G3DSA:3.90.199.10 42 224 2.8E-85 T 22-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Gene3D G3DSA:2.120.10.90 530 742 3.2E-115 T 22-04-2016 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Gene3D G3DSA:2.120.10.90 797 899 3.2E-115 T 22-04-2016 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 Gene3D G3DSA:3.30.1360.40 244 340 3.3E-39 T 22-04-2016 IPR024946 Arginine repressor C-terminal-like domain RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 16 899 0.0 T 22-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 SMART SM00434 19 498 4.2E-284 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 PANTHER PTHR10169 16 424 0.0 T 22-04-2016 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 PANTHER PTHR10169 796 873 0.0 T 22-04-2016 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 PANTHER PTHR10169 449 741 0.0 T 22-04-2016 RM11_RS03935 8ca0666c6956ec4d7cfe9b30995a4447 925 SUPERFAMILY SSF56719 38 518 3.01E-179 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RM11_RS00265 0f69ffea92a7ee48a0f04ac693782a06 179 SUPERFAMILY SSF55144 2 178 4.19E-41 T 22-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase RM11_RS00265 0f69ffea92a7ee48a0f04ac693782a06 179 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 2 177 20.191 T 22-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 RM11_RS00265 0f69ffea92a7ee48a0f04ac693782a06 179 PANTHER PTHR35561:SF1 1 179 1.7E-36 T 22-04-2016 RM11_RS00265 0f69ffea92a7ee48a0f04ac693782a06 179 Gene3D G3DSA:3.90.1140.10 3 179 4.0E-38 T 22-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase RM11_RS00265 0f69ffea92a7ee48a0f04ac693782a06 179 PANTHER PTHR35561 1 179 1.7E-36 T 22-04-2016 RM11_RS00265 0f69ffea92a7ee48a0f04ac693782a06 179 Pfam PF02834 LigT like Phosphoesterase 9 83 3.4E-13 T 22-04-2016 IPR014051 Phosphoesterase, HXTX RM11_RS00265 0f69ffea92a7ee48a0f04ac693782a06 179 Pfam PF02834 LigT like Phosphoesterase 93 161 5.6E-10 T 22-04-2016 IPR014051 Phosphoesterase, HXTX RM11_RS00265 0f69ffea92a7ee48a0f04ac693782a06 179 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 3 174 1.6E-35 T 22-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 RM11_RS01430 595840b1ee50392653ed19a3aa2604f6 362 Gene3D G3DSA:3.20.20.70 2 347 1.1E-122 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS01430 595840b1ee50392653ed19a3aa2604f6 362 Pfam PF01180 Dihydroorotate dehydrogenase 43 336 4.0E-88 T 22-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RM11_RS01430 595840b1ee50392653ed19a3aa2604f6 362 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 10 345 3.4E-119 T 22-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS01430 595840b1ee50392653ed19a3aa2604f6 362 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 288 308 - T 22-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 RM11_RS01430 595840b1ee50392653ed19a3aa2604f6 362 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 78 97 - T 22-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 RM11_RS01430 595840b1ee50392653ed19a3aa2604f6 362 PANTHER PTHR11938:SF47 12 332 2.7E-100 T 22-04-2016 RM11_RS01430 595840b1ee50392653ed19a3aa2604f6 362 PANTHER PTHR11938 12 332 2.7E-100 T 22-04-2016 RM11_RS01430 595840b1ee50392653ed19a3aa2604f6 362 SUPERFAMILY SSF51395 6 349 8.25E-99 T 22-04-2016 RM11_RS01430 595840b1ee50392653ed19a3aa2604f6 362 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 4 332 41.968 T 22-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS02915 fa6d36b2bc43598946cb8ff1bd3f0d06 102 PANTHER PTHR11434 4 102 1.8E-41 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RM11_RS02915 fa6d36b2bc43598946cb8ff1bd3f0d06 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 3 102 19.698 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RM11_RS02915 fa6d36b2bc43598946cb8ff1bd3f0d06 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 97 8.3E-24 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RM11_RS00650 233d4e692bc6fce9f6c6ab30518b1b8b 164 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 1.7E-30 T 22-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00650 233d4e692bc6fce9f6c6ab30518b1b8b 164 SUPERFAMILY SSF141091 1 101 1.96E-32 T 22-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RM11_RS00650 233d4e692bc6fce9f6c6ab30518b1b8b 164 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 7.3E-33 T 22-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RM11_RS00650 233d4e692bc6fce9f6c6ab30518b1b8b 164 PANTHER PTHR21349 1 123 1.2E-37 T 22-04-2016 RM11_RS00650 233d4e692bc6fce9f6c6ab30518b1b8b 164 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 23.735 T 22-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 Pfam PF14849 YidC periplasmic domain 89 378 9.1E-75 T 22-04-2016 IPR028053 Membrane insertase YidC, N-terminal RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PRINTS PR00701 60kDa inner membrane protein signature 360 380 2.3E-19 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PRINTS PR00701 60kDa inner membrane protein signature 280 295 2.3E-19 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PRINTS PR00701 60kDa inner membrane protein signature 95 116 2.3E-19 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PRINTS PR00701 60kDa inner membrane protein signature 451 474 2.3E-19 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 589 22.002 T 22-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 Pfam PF02096 60Kd inner membrane protein 390 587 2.0E-57 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 389 587 1.6E-64 T 22-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PANTHER PTHR12428 293 499 4.1E-71 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PANTHER PTHR12428 196 271 4.1E-71 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PANTHER PTHR12428 519 585 4.1E-71 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PANTHER PTHR12428:SF14 293 499 4.1E-71 T 22-04-2016 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PANTHER PTHR12428:SF14 196 271 4.1E-71 T 22-04-2016 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PANTHER PTHR12428:SF14 519 585 4.1E-71 T 22-04-2016 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PRINTS PR01900 YidC translocation/secretion protein signature 542 566 1.2E-19 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PRINTS PR01900 YidC translocation/secretion protein signature 375 391 1.2E-19 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 PRINTS PR01900 YidC translocation/secretion protein signature 523 538 1.2E-19 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RM11_RS04850 2c45a9f31080f4dd9089fa620fe2fdcf 613 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 388 1.1E-91 T 22-04-2016 IPR028053 Membrane insertase YidC, N-terminal RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 298 315 4.8E-37 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 323 334 4.8E-37 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 210 224 4.8E-37 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 297 4.8E-37 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 249 263 4.8E-37 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 16 395 45.204 T 22-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00097 Anthranilate synthase component II signature 281 292 4.5E-6 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00097 Anthranilate synthase component II signature 252 261 4.5E-6 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00097 Anthranilate synthase component II signature 366 379 4.5E-6 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 SUPERFAMILY SSF52317 174 395 9.32E-60 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 18 391 7.4E-128 T 22-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 SMART SM01097 16 150 1.6E-73 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 Gene3D G3DSA:3.40.50.880 175 395 8.5E-76 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 SUPERFAMILY SSF52021 17 166 2.35E-49 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 Gene3D G3DSA:3.50.30.20 18 165 1.5E-51 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00096 Glutamine amidotransferase superfamily signature 281 292 1.0E-11 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00096 Glutamine amidotransferase superfamily signature 366 379 1.0E-11 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PRINTS PR00096 Glutamine amidotransferase superfamily signature 252 261 1.0E-11 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PANTHER PTHR11405 16 189 6.2E-180 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 PANTHER PTHR11405 207 396 6.2E-180 T 22-04-2016 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 18 149 2.1E-44 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RM11_RS04585 e904737a0062c50b8b1c53ce0a3d784a 398 Pfam PF00117 Glutamine amidotransferase class-I 212 389 5.9E-45 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RM11_RS01460 32bcb01eb4b7c5647146dde926583ace 116 Pfam PF00920 Dehydratase family 29 113 5.7E-6 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS01460 32bcb01eb4b7c5647146dde926583ace 116 PANTHER PTHR21000 6 112 5.0E-20 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS01460 32bcb01eb4b7c5647146dde926583ace 116 SUPERFAMILY SSF143975 5 112 5.89E-10 T 22-04-2016 RM11_RS01460 32bcb01eb4b7c5647146dde926583ace 116 PANTHER PTHR21000:SF9 6 112 5.0E-20 T 22-04-2016 RM11_RS00905 66359863bd1cfee9ae317630ee57050e 288 Pfam PF05175 Methyltransferase small domain 108 203 1.6E-14 T 22-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RM11_RS00905 66359863bd1cfee9ae317630ee57050e 288 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 6 286 38.078 T 22-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RM11_RS00905 66359863bd1cfee9ae317630ee57050e 288 Gene3D G3DSA:3.40.50.150 92 284 3.5E-62 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS00905 66359863bd1cfee9ae317630ee57050e 288 PANTHER PTHR18895 10 284 1.6E-80 T 22-04-2016 RM11_RS00905 66359863bd1cfee9ae317630ee57050e 288 PANTHER PTHR18895:SF64 10 284 1.6E-80 T 22-04-2016 RM11_RS00905 66359863bd1cfee9ae317630ee57050e 288 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 28 282 1.4E-81 T 22-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RM11_RS00905 66359863bd1cfee9ae317630ee57050e 288 SUPERFAMILY SSF53335 20 282 1.37E-51 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS00905 66359863bd1cfee9ae317630ee57050e 288 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 190 196 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RM11_RS00905 66359863bd1cfee9ae317630ee57050e 288 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 11 283 6.2E-66 T 22-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RM11_RS00905 66359863bd1cfee9ae317630ee57050e 288 Gene3D G3DSA:1.10.8.10 6 88 1.1E-20 T 22-04-2016 RM11_RS05205 b9f575ee5040b615fc8746dd2a8c0570 784 SMART SM00382 427 684 2.8E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS05205 b9f575ee5040b615fc8746dd2a8c0570 784 SUPERFAMILY SSF52540 384 710 1.97E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05205 b9f575ee5040b615fc8746dd2a8c0570 784 Gene3D G3DSA:3.40.50.300 563 695 1.1E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05205 b9f575ee5040b615fc8746dd2a8c0570 784 Gene3D G3DSA:3.40.50.300 412 492 1.1E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05205 b9f575ee5040b615fc8746dd2a8c0570 784 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 174 376 3.4E-71 T 22-04-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 RM11_RS05205 b9f575ee5040b615fc8746dd2a8c0570 784 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 4 780 3.6E-291 T 22-04-2016 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 RM11_RS03445 4c20ece0c8047a7d81743d8d006659a3 239 Gene3D G3DSA:1.10.3720.10 21 227 7.7E-35 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS03445 4c20ece0c8047a7d81743d8d006659a3 239 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 22 123 5.2E-14 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RM11_RS03445 4c20ece0c8047a7d81743d8d006659a3 239 PANTHER PTHR30133 13 239 8.4E-67 T 22-04-2016 RM11_RS03445 4c20ece0c8047a7d81743d8d006659a3 239 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 226 3.3E-17 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS03445 4c20ece0c8047a7d81743d8d006659a3 239 SUPERFAMILY SSF161098 21 216 3.53E-34 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS00775 0036098c4b29a696c6816a5ecbf231ba 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.518 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RM11_RS00775 0036098c4b29a696c6816a5ecbf231ba 176 Gene3D G3DSA:3.90.80.10 4 174 6.5E-60 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RM11_RS00775 0036098c4b29a696c6816a5ecbf231ba 176 Pfam PF00719 Inorganic pyrophosphatase 18 172 2.6E-51 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RM11_RS00775 0036098c4b29a696c6816a5ecbf231ba 176 PANTHER PTHR10286 6 172 2.3E-64 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RM11_RS00775 0036098c4b29a696c6816a5ecbf231ba 176 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RM11_RS00775 0036098c4b29a696c6816a5ecbf231ba 176 SUPERFAMILY SSF50324 4 175 1.57E-64 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RM11_RS02955 6d8a6a17cf4966fb283f9fdad1219708 226 Gene3D G3DSA:3.40.50.300 4 224 5.9E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02955 6d8a6a17cf4966fb283f9fdad1219708 226 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS02955 6d8a6a17cf4966fb283f9fdad1219708 226 SMART SM00382 33 219 1.4E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS02955 6d8a6a17cf4966fb283f9fdad1219708 226 SUPERFAMILY SSF52540 4 222 2.28E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02955 6d8a6a17cf4966fb283f9fdad1219708 226 Pfam PF00005 ABC transporter 24 172 3.8E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS03500 bfff602e13c5d47d6d0625d3bd96d252 186 Pfam PF01765 Ribosome recycling factor 21 184 1.5E-55 T 22-04-2016 IPR023584 Ribosome recycling factor domain RM11_RS03500 bfff602e13c5d47d6d0625d3bd96d252 186 Hamap MF_00040 Ribosome-recycling factor [frr]. 4 186 25.216 T 22-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RM11_RS03500 bfff602e13c5d47d6d0625d3bd96d252 186 PANTHER PTHR20982 6 186 1.1E-71 T 22-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RM11_RS03500 bfff602e13c5d47d6d0625d3bd96d252 186 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 186 1.6E-60 T 22-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RM11_RS03500 bfff602e13c5d47d6d0625d3bd96d252 186 SUPERFAMILY SSF55194 6 186 1.16E-65 T 22-04-2016 IPR023584 Ribosome recycling factor domain RM11_RS03500 bfff602e13c5d47d6d0625d3bd96d252 186 Gene3D G3DSA:1.10.132.20 67 186 3.3E-42 T 22-04-2016 IPR023584 Ribosome recycling factor domain RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 316 2.0E-118 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 1.8E-38 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 1.8E-38 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 1.8E-38 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 1.8E-38 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 1.8E-38 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 1.8E-38 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 PANTHER PTHR22855:SF42 3 315 2.8E-102 T 22-04-2016 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 PANTHER PTHR22855 3 315 2.8E-102 T 22-04-2016 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 316 45.561 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 SUPERFAMILY SSF52096 4 315 3.78E-89 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 4 148 5.9E-52 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RM11_RS06605 2b0d8fd80d0b67915e6ed250afabfe39 318 Gene3D G3DSA:3.90.226.10 56 272 1.8E-42 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS00685 01654d651ba0c27f5c11024488aee570 959 Gene3D G3DSA:1.20.5.170 724 776 7.8E-8 T 22-04-2016 RM11_RS00685 01654d651ba0c27f5c11024488aee570 959 Gene3D G3DSA:1.20.5.170 474 509 6.2E-5 T 22-04-2016 RM11_RS00685 01654d651ba0c27f5c11024488aee570 959 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 289 307 4.4E-6 T 22-04-2016 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 RM11_RS00685 01654d651ba0c27f5c11024488aee570 959 SUPERFAMILY SSF101967 196 312 1.24E-12 T 22-04-2016 RM11_RS00685 01654d651ba0c27f5c11024488aee570 959 Gene3D G3DSA:3.30.1300.30 817 824 5.1E-23 T 22-04-2016 RM11_RS00685 01654d651ba0c27f5c11024488aee570 959 Gene3D G3DSA:3.30.1300.30 867 955 5.1E-23 T 22-04-2016 RM11_RS00685 01654d651ba0c27f5c11024488aee570 959 Pfam PF03895 YadA-like C-terminal region 881 955 5.8E-15 T 22-04-2016 IPR005594 YadA-like, C-terminal RM11_RS00685 01654d651ba0c27f5c11024488aee570 959 SUPERFAMILY SSF54523 867 955 2.35E-19 T 22-04-2016 RM11_RS00685 01654d651ba0c27f5c11024488aee570 959 SUPERFAMILY SSF54523 818 824 2.35E-19 T 22-04-2016 RM11_RS00685 01654d651ba0c27f5c11024488aee570 959 Gene3D G3DSA:2.150.10.10 194 311 2.2E-14 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RM11_RS00760 4b92c1c9f4c0889e0a02d481cf376f33 186 Pfam PF06776 Invasion associated locus B (IalB) protein 48 181 1.8E-24 T 22-04-2016 IPR010642 Invasion protein B RM11_RS04030 64fd4f76d2f3e4e3b3f44715ed8cb89c 154 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 148 2.1E-46 T 22-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RM11_RS04030 64fd4f76d2f3e4e3b3f44715ed8cb89c 154 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 149 8.4E-36 T 22-04-2016 IPR021131 Ribosomal protein L18e/L15P RM11_RS04030 64fd4f76d2f3e4e3b3f44715ed8cb89c 154 PANTHER PTHR12934 1 148 1.7E-62 T 22-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RM11_RS04030 64fd4f76d2f3e4e3b3f44715ed8cb89c 154 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 151 19.808 T 22-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 RM11_RS04030 64fd4f76d2f3e4e3b3f44715ed8cb89c 154 Gene3D G3DSA:3.100.10.10 32 150 1.4E-25 T 22-04-2016 RM11_RS04030 64fd4f76d2f3e4e3b3f44715ed8cb89c 154 SUPERFAMILY SSF52080 4 148 3.27E-42 T 22-04-2016 IPR021131 Ribosomal protein L18e/L15P RM11_RS03175 f38b66bccc78048fcf90e8c50f705570 358 PANTHER PTHR11795:SF371 113 358 5.2E-105 T 22-04-2016 RM11_RS03175 f38b66bccc78048fcf90e8c50f705570 358 PANTHER PTHR11795:SF371 1 58 5.2E-105 T 22-04-2016 RM11_RS03175 f38b66bccc78048fcf90e8c50f705570 358 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 342 1.8E-38 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RM11_RS03175 f38b66bccc78048fcf90e8c50f705570 358 PANTHER PTHR11795 113 358 5.2E-105 T 22-04-2016 RM11_RS03175 f38b66bccc78048fcf90e8c50f705570 358 PANTHER PTHR11795 1 58 5.2E-105 T 22-04-2016 RM11_RS04835 cd8ef80336239fd6e9235eff2632ac6c 361 Gene3D G3DSA:3.40.50.300 100 356 1.0E-98 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04835 cd8ef80336239fd6e9235eff2632ac6c 361 Pfam PF01883 Domain of unknown function DUF59 6 76 1.6E-12 T 22-04-2016 IPR002744 Domain of unknown function DUF59 RM11_RS04835 cd8ef80336239fd6e9235eff2632ac6c 361 PANTHER PTHR23264 1 360 3.6E-131 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RM11_RS04835 cd8ef80336239fd6e9235eff2632ac6c 361 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 113 356 6.2E-95 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RM11_RS04835 cd8ef80336239fd6e9235eff2632ac6c 361 SUPERFAMILY SSF52540 105 341 6.08E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04835 cd8ef80336239fd6e9235eff2632ac6c 361 Hamap MF_02040 Iron-sulfur cluster carrier protein. 108 357 36.012 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RM11_RS04835 cd8ef80336239fd6e9235eff2632ac6c 361 SUPERFAMILY SSF117916 1 84 6.87E-15 T 22-04-2016 RM11_RS04835 cd8ef80336239fd6e9235eff2632ac6c 361 ProSitePatterns PS01215 Mrp family signature. 220 236 - T 22-04-2016 IPR000808 Mrp, conserved site GO:0005524 RM11_RS01735 52140f835fca03864f90c8ae13930f92 234 PANTHER PTHR26402 13 231 5.0E-76 T 22-04-2016 RM11_RS01735 52140f835fca03864f90c8ae13930f92 234 Gene3D G3DSA:3.40.50.2300 12 131 1.6E-37 T 22-04-2016 RM11_RS01735 52140f835fca03864f90c8ae13930f92 234 SMART SM00448 13 123 7.4E-39 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS01735 52140f835fca03864f90c8ae13930f92 234 SUPERFAMILY SSF52172 10 138 3.56E-39 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS01735 52140f835fca03864f90c8ae13930f92 234 Pfam PF00072 Response regulator receiver domain 16 123 1.2E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS01735 52140f835fca03864f90c8ae13930f92 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 231 2.4E-15 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS01735 52140f835fca03864f90c8ae13930f92 234 SUPERFAMILY SSF46894 139 232 3.4E-20 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RM11_RS01735 52140f835fca03864f90c8ae13930f92 234 Gene3D G3DSA:1.10.10.10 139 233 1.1E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS01735 52140f835fca03864f90c8ae13930f92 234 PANTHER PTHR26402:SF292 13 231 5.0E-76 T 22-04-2016 RM11_RS01735 52140f835fca03864f90c8ae13930f92 234 SMART SM00862 159 231 5.5E-16 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 Pfam PF13450 NAD(P)-binding Rossmann-like domain 17 58 2.5E-7 T 22-04-2016 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 PANTHER PTHR10617:SF107 7 476 1.8E-221 T 22-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 PANTHER PTHR10617 7 476 1.8E-221 T 22-04-2016 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 SUPERFAMILY SSF51905 308 450 1.61E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 SUPERFAMILY SSF51905 9 211 1.61E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 SUPERFAMILY SSF54862 453 552 4.06E-24 T 22-04-2016 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 449 549 8.6E-43 T 22-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 Gene3D G3DSA:3.50.50.60 118 223 3.0E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 Gene3D G3DSA:3.50.50.60 309 450 3.0E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 Gene3D G3DSA:3.50.50.60 13 51 3.0E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 SUPERFAMILY SSF54373 213 308 4.71E-35 T 22-04-2016 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 180 195 5.7E-6 T 22-04-2016 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 14 36 5.7E-6 T 22-04-2016 RM11_RS04810 4597a76eab65b30b344232d1341aef1d 552 Gene3D G3DSA:3.30.70.20 495 536 9.1E-4 T 22-04-2016 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 PANTHER PTHR11606:SF1 178 524 0.0 T 22-04-2016 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 PANTHER PTHR11606:SF1 633 1060 0.0 T 22-04-2016 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 PANTHER PTHR11606 178 524 0.0 T 22-04-2016 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 SUPERFAMILY SSF53223 719 918 1.34E-19 T 22-04-2016 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 PANTHER PTHR11606 72 129 0.0 T 22-04-2016 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 PANTHER PTHR11606 1085 1330 0.0 T 22-04-2016 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 PANTHER PTHR11606:SF1 72 129 0.0 T 22-04-2016 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 PANTHER PTHR11606:SF1 1085 1330 0.0 T 22-04-2016 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 67 1555 0.0 T 22-04-2016 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 SUPERFAMILY SSF51735 907 1010 9.19E-24 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 SUPERFAMILY SSF51735 1046 1195 9.19E-24 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 Gene3D G3DSA:3.40.50.720 1059 1169 3.5E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 Gene3D G3DSA:3.40.50.720 904 1016 3.5E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 PIRSF PIRSF036761 1 1562 0.0 T 22-04-2016 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 RM11_RS06455 96a3f798bde757a13401e9048f7618b2 1562 PANTHER PTHR11606 633 1060 0.0 T 22-04-2016 RM11_RS03450 f5e8087233dbff50376863b1fb299c64 235 PANTHER PTHR30614 1 235 1.6E-59 T 22-04-2016 RM11_RS03450 f5e8087233dbff50376863b1fb299c64 235 SUPERFAMILY SSF161098 22 217 5.63E-35 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS03450 f5e8087233dbff50376863b1fb299c64 235 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 22 126 1.2E-18 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RM11_RS03450 f5e8087233dbff50376863b1fb299c64 235 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 230 3.0E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS03450 f5e8087233dbff50376863b1fb299c64 235 Gene3D G3DSA:1.10.3720.10 21 231 8.3E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS02035 d09b33f28c5d9f89b17362b69a80cce1 150 PANTHER PTHR30009 8 142 7.2E-30 T 22-04-2016 RM11_RS02035 d09b33f28c5d9f89b17362b69a80cce1 150 Pfam PF03918 Cytochrome C biogenesis protein 14 144 2.7E-47 T 22-04-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 182 321 7.4E-49 T 22-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 190 211 - T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 58 85 7.5E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 134 154 7.5E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 240 257 7.5E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 175 199 7.5E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 8 25 7.5E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 200 224 7.5E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 Gene3D G3DSA:3.40.50.720 5 189 1.2E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 PIRSF PIRSF000114 2 334 5.0E-99 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 Gene3D G3DSA:1.10.1040.10 192 334 3.3E-54 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 SUPERFAMILY SSF48179 182 334 1.38E-56 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 SUPERFAMILY SSF51735 6 180 9.03E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 4 324 36.89 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 6 161 1.1E-50 T 22-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RM11_RS00585 0b616cf023ea05d543309c7b43c9cbe5 340 PANTHER PTHR11728 1 334 3.1E-133 T 22-04-2016 RM11_RS05115 75d028ca35ed721fbba908817cdf3e7f 252 Gene3D G3DSA:3.40.50.300 1 227 2.4E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05115 75d028ca35ed721fbba908817cdf3e7f 252 SMART SM00382 26 213 9.5E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS05115 75d028ca35ed721fbba908817cdf3e7f 252 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS05115 75d028ca35ed721fbba908817cdf3e7f 252 Pfam PF00005 ABC transporter 18 164 2.4E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS05115 75d028ca35ed721fbba908817cdf3e7f 252 SUPERFAMILY SSF52540 2 225 4.4E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01150 651f489fd7efe63d998399e2458a5fef 252 SMART SM00382 29 228 1.3E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS01150 651f489fd7efe63d998399e2458a5fef 252 Gene3D G3DSA:3.40.50.300 8 247 8.1E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01150 651f489fd7efe63d998399e2458a5fef 252 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 5 252 4.9E-122 T 22-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 RM11_RS01150 651f489fd7efe63d998399e2458a5fef 252 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS01150 651f489fd7efe63d998399e2458a5fef 252 SUPERFAMILY SSF52540 8 239 9.35E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01150 651f489fd7efe63d998399e2458a5fef 252 Pfam PF00005 ABC transporter 20 176 9.3E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS02145 7a43b739c3e2ad8af51643748e5289c5 697 SUPERFAMILY SSF53955 544 688 9.15E-37 T 22-04-2016 IPR023346 Lysozyme-like domain RM11_RS02145 7a43b739c3e2ad8af51643748e5289c5 697 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 549 577 - T 22-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RM11_RS02145 7a43b739c3e2ad8af51643748e5289c5 697 Gene3D G3DSA:1.25.20.10 74 436 1.3E-24 T 22-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 RM11_RS02145 7a43b739c3e2ad8af51643748e5289c5 697 Gene3D G3DSA:1.10.530.10 543 687 1.7E-38 T 22-04-2016 RM11_RS02145 7a43b739c3e2ad8af51643748e5289c5 697 Pfam PF01464 Transglycosylase SLT domain 542 644 7.4E-24 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 RM11_RS02145 7a43b739c3e2ad8af51643748e5289c5 697 PANTHER PTHR21666 544 693 5.1E-33 T 22-04-2016 RM11_RS02145 7a43b739c3e2ad8af51643748e5289c5 697 SUPERFAMILY SSF48435 73 518 1.31E-74 T 22-04-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 RM11_RS02675 c318a2affd94d68d14311cec0067fa32 124 Gene3D G3DSA:2.60.300.12 7 98 4.7E-26 T 22-04-2016 IPR000361 FeS cluster biogenesis RM11_RS02675 c318a2affd94d68d14311cec0067fa32 124 Pfam PF01521 Iron-sulphur cluster biosynthesis 7 106 1.1E-15 T 22-04-2016 IPR000361 FeS cluster biogenesis RM11_RS02675 c318a2affd94d68d14311cec0067fa32 124 SUPERFAMILY SSF89360 6 98 3.34E-22 T 22-04-2016 IPR000361 FeS cluster biogenesis RM11_RS02675 c318a2affd94d68d14311cec0067fa32 124 PANTHER PTHR10072 3 107 1.9E-30 T 22-04-2016 RM11_RS02675 c318a2affd94d68d14311cec0067fa32 124 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 7 108 1.1E-26 T 22-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RM11_RS01285 72a5bfdaff8ee1dbff635363daa49e91 362 PANTHER PTHR11241 6 165 2.8E-39 T 22-04-2016 RM11_RS01285 72a5bfdaff8ee1dbff635363daa49e91 362 Gene3D G3DSA:2.70.40.10 169 338 1.2E-62 T 22-04-2016 IPR029054 dUTPase-like RM11_RS01285 72a5bfdaff8ee1dbff635363daa49e91 362 Gene3D G3DSA:2.70.40.10 6 168 1.3E-62 T 22-04-2016 IPR029054 dUTPase-like RM11_RS01285 72a5bfdaff8ee1dbff635363daa49e91 362 PANTHER PTHR11241:SF1 6 165 2.8E-39 T 22-04-2016 RM11_RS01285 72a5bfdaff8ee1dbff635363daa49e91 362 SUPERFAMILY SSF51283 7 168 8.64E-33 T 22-04-2016 IPR029054 dUTPase-like RM11_RS01285 72a5bfdaff8ee1dbff635363daa49e91 362 Pfam PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 5 362 3.5E-170 T 22-04-2016 IPR010550 Deoxycytidine triphosphate deaminase, bacterial GO:0008829|GO:0009394 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 RM11_RS01285 72a5bfdaff8ee1dbff635363daa49e91 362 SUPERFAMILY SSF51283 170 338 1.92E-19 T 22-04-2016 IPR029054 dUTPase-like RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 SUPERFAMILY SSF116726 136 227 6.15E-12 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 8.7E-19 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 8.7E-19 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 8.7E-19 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 8.7E-19 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 8.7E-19 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 Pfam PF02254 TrkA-N domain 237 354 9.2E-17 T 22-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 Pfam PF02254 TrkA-N domain 3 126 4.6E-25 T 22-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 SUPERFAMILY SSF51735 235 380 6.17E-26 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 Gene3D G3DSA:3.40.50.720 235 381 4.7E-29 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 Gene3D G3DSA:3.40.50.720 1 151 8.8E-41 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 Gene3D G3DSA:3.30.70.1450 382 452 1.0E-9 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 Gene3D G3DSA:3.30.70.1450 160 227 2.8E-5 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 SUPERFAMILY SSF51735 1 151 4.11E-34 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 PANTHER PTHR13789 433 439 1.3E-40 T 22-04-2016 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 PANTHER PTHR13789 1 171 1.3E-40 T 22-04-2016 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 PANTHER PTHR13789:SF225 433 439 1.3E-40 T 22-04-2016 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 PANTHER PTHR13789:SF225 1 171 1.3E-40 T 22-04-2016 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 SUPERFAMILY SSF116726 366 451 2.35E-15 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 Pfam PF02080 TrkA-C domain 385 451 1.6E-13 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS02575 5f87be944f3870132f667b4fd13e55f2 458 Pfam PF02080 TrkA-C domain 163 226 2.3E-6 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RM11_RS02445 9cb589ff8b3bcca336c3e34a63b4d869 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 114 140 3.5E-40 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RM11_RS02445 9cb589ff8b3bcca336c3e34a63b4d869 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 13 40 3.5E-40 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RM11_RS02445 9cb589ff8b3bcca336c3e34a63b4d869 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 170 198 3.5E-40 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RM11_RS02445 9cb589ff8b3bcca336c3e34a63b4d869 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 96 114 3.5E-40 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RM11_RS02445 9cb589ff8b3bcca336c3e34a63b4d869 263 Pfam PF00902 Sec-independent protein translocase protein (TatC) 16 237 3.8E-59 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RM11_RS02445 9cb589ff8b3bcca336c3e34a63b4d869 263 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 14 242 8.7E-51 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RM11_RS02445 9cb589ff8b3bcca336c3e34a63b4d869 263 PANTHER PTHR30371 3 257 6.5E-70 T 22-04-2016 RM11_RS02445 9cb589ff8b3bcca336c3e34a63b4d869 263 PANTHER PTHR30371:SF0 3 257 6.5E-70 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RM11_RS02445 9cb589ff8b3bcca336c3e34a63b4d869 263 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 4 256 17.72 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RM11_RS04855 fbb50aa20860466a4dc0b50810e89e7e 215 Pfam PF01926 50S ribosome-binding GTPase 34 161 2.8E-19 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS04855 fbb50aa20860466a4dc0b50810e89e7e 215 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 17 209 3.9E-60 T 22-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RM11_RS04855 fbb50aa20860466a4dc0b50810e89e7e 215 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 23 213 25.888 T 22-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RM11_RS04855 fbb50aa20860466a4dc0b50810e89e7e 215 Gene3D G3DSA:3.40.50.300 28 213 6.6E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04855 fbb50aa20860466a4dc0b50810e89e7e 215 SUPERFAMILY SSF52540 23 213 5.47E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04855 fbb50aa20860466a4dc0b50810e89e7e 215 PANTHER PTHR11649 14 213 5.8E-50 T 22-04-2016 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 Gene3D G3DSA:3.90.199.10 341 406 7.7E-106 T 22-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 Gene3D G3DSA:3.90.199.10 37 242 7.7E-106 T 22-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 610 643 0.0092 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 558 606 0.077 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 656 695 3.2E-7 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 Gene3D G3DSA:3.30.1360.40 243 339 3.5E-25 T 22-04-2016 IPR024946 Arginine repressor C-terminal-like domain RM11_RS03780 7317beb85fb49fadd82940471709a463 749 PANTHER PTHR10169:SF48 10 486 8.1E-183 T 22-04-2016 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 PANTHER PTHR10169:SF48 510 618 8.1E-183 T 22-04-2016 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 10 748 31.677 T 22-04-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 PANTHER PTHR10169 10 486 8.1E-183 T 22-04-2016 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 PANTHER PTHR10169 510 618 8.1E-183 T 22-04-2016 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 Gene3D G3DSA:2.120.10.90 510 747 8.7E-28 T 22-04-2016 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 38 475 4.7E-135 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 SMART SM00434 17 469 5.1E-207 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 SUPERFAMILY SSF101904 511 746 1.57E-48 T 22-04-2016 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 SUPERFAMILY SSF56719 37 485 2.35E-149 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RM11_RS03780 7317beb85fb49fadd82940471709a463 749 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 14 746 4.7E-256 T 22-04-2016 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 SUPERFAMILY SSF51246 325 420 1.1E-29 T 22-04-2016 IPR011054 Rudiment single hybrid motif RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 292 2.3E-75 T 22-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 SUPERFAMILY SSF56059 102 316 9.37E-55 T 22-04-2016 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 420 4.1E-158 T 22-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 327 418 1.0E-26 T 22-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 Gene3D G3DSA:3.90.600.10 327 419 1.3E-33 T 22-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 Gene3D G3DSA:3.30.470.20 188 324 1.6E-57 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 1.6E-34 T 22-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 286 293 - T 22-04-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 PANTHER PTHR10520 1 420 9.8E-249 T 22-04-2016 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 SMART SM01210 326 420 9.2E-47 T 22-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 420 40.792 T 22-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 SUPERFAMILY SSF52440 1 101 1.17E-34 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 SMART SM01209 101 292 1.3E-122 T 22-04-2016 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 Gene3D G3DSA:3.30.1490.20 120 187 5.0E-26 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RM11_RS01770 b36fe2b8b9c4f76342f4134aafec1dec 424 Gene3D G3DSA:3.40.50.20 2 93 1.0E-34 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RM11_RS04405 2500c5ec4a4a9fa4519c75554c49350f 302 Pfam PF08478 POTRA domain, FtsQ-type 83 149 9.4E-13 T 22-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type RM11_RS04405 2500c5ec4a4a9fa4519c75554c49350f 302 Pfam PF03799 Cell division protein FtsQ 153 266 2.7E-15 T 22-04-2016 IPR005548 Cell division protein FtsQ/DivIB RM11_RS04405 2500c5ec4a4a9fa4519c75554c49350f 302 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 51 284 20.815 T 22-04-2016 IPR026579 Cell division protein FtsQ GO:0000917 RM11_RS04405 2500c5ec4a4a9fa4519c75554c49350f 302 PANTHER PTHR35851 40 291 1.3E-35 T 22-04-2016 RM11_RS04405 2500c5ec4a4a9fa4519c75554c49350f 302 PANTHER PTHR35851:SF1 40 291 1.3E-35 T 22-04-2016 RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 Pfam PF07724 AAA domain (Cdc48 subfamily) 113 310 3.9E-48 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 PANTHER PTHR11262 5 418 1.1E-246 T 22-04-2016 RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 12 409 1.4E-198 T 22-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 SUPERFAMILY SSF52540 63 401 7.23E-73 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 SMART SM00994 14 53 1.7E-24 T 22-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 Gene3D G3DSA:1.10.8.60 316 414 5.0E-37 T 22-04-2016 RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 316 388 1.5E-15 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 SMART SM01086 316 411 2.5E-33 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 414 53.16 T 22-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 SMART SM00382 112 296 6.1E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 Gene3D G3DSA:3.40.50.300 293 310 1.5E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 Gene3D G3DSA:3.40.50.300 67 254 1.5E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 SUPERFAMILY SSF57716 15 50 1.2E-11 T 22-04-2016 RM11_RS02590 bdaf1e1a712fc88155c3cbe17c4e0271 424 Pfam PF06689 ClpX C4-type zinc finger 15 52 2.7E-20 T 22-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 Gene3D G3DSA:1.10.940.10 17 163 1.5E-26 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 369 385 8.6E-20 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 258 268 8.6E-20 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 319 331 8.6E-20 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 436 453 8.6E-20 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 229 243 8.6E-20 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 PANTHER PTHR22807:SF30 53 453 4.3E-65 T 22-04-2016 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 Pfam PF01189 16S rRNA methyltransferase RsmB/F 254 413 2.3E-43 T 22-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 PANTHER PTHR22807 53 453 4.3E-65 T 22-04-2016 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 Pfam PF01029 NusB family 19 145 2.3E-14 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 Gene3D G3DSA:3.40.50.150 241 453 4.9E-46 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 SUPERFAMILY SSF48013 18 164 1.96E-22 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RM11_RS06420 207519b6666f3a5c8ed3d1d1b0ae95c9 455 SUPERFAMILY SSF53335 156 454 5.78E-55 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 9.1E-16 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 9.1E-16 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 9.1E-16 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PANTHER PTHR24322 152 184 4.7E-57 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PANTHER PTHR24322 11 136 4.7E-57 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 Gene3D G3DSA:3.40.50.720 1 243 1.5E-84 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 243 1.6E-95 T 22-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 2.0E-62 T 22-04-2016 RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PANTHER PTHR24322:SF328 152 184 4.7E-57 T 22-04-2016 RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PANTHER PTHR24322:SF328 11 136 4.7E-57 T 22-04-2016 RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 SUPERFAMILY SSF51735 6 244 6.59E-82 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.1E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.1E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.1E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.1E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.1E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RM11_RS02320 b3fbd2c2f81a23111c0e80df9f22be58 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 188 2.6E-6 T 22-04-2016 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 SUPERFAMILY SSF52210 129 299 1.83E-52 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 PRINTS PR01798 Succinyl-CoA synthase signature 214 227 2.5E-39 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 PRINTS PR01798 Succinyl-CoA synthase signature 183 201 2.5E-39 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 PRINTS PR01798 Succinyl-CoA synthase signature 88 105 2.5E-39 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 PRINTS PR01798 Succinyl-CoA synthase signature 250 267 2.5E-39 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 Pfam PF02629 CoA binding domain 7 105 2.8E-23 T 22-04-2016 IPR003781 CoA-binding GO:0048037 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 Gene3D G3DSA:3.40.50.261 125 295 6.1E-72 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 Pfam PF00549 CoA-ligase 157 280 1.2E-19 T 22-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 158 187 - T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 Gene3D G3DSA:3.40.50.720 2 124 1.9E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 PANTHER PTHR11117 1 299 6.3E-178 T 22-04-2016 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 297 8.8E-129 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 SMART SM00881 4 106 8.6E-32 T 22-04-2016 IPR003781 CoA-binding GO:0048037 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 PANTHER PTHR11117:SF2 1 299 6.3E-178 T 22-04-2016 RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 246 259 - T 22-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 SUPERFAMILY SSF51735 1 128 1.62E-37 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06700 688b23f3695cbc8df3d1aeb74e2007f9 300 PIRSF PIRSF001553 1 299 1.0E-120 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RM11_RS05650 56f6b3961e3ec42853184d29b70b041e 431 Gene3D G3DSA:3.65.10.10 230 429 3.2E-55 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RM11_RS05650 56f6b3961e3ec42853184d29b70b041e 431 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 428 4.0E-167 T 22-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS05650 56f6b3961e3ec42853184d29b70b041e 431 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 429 43.534 T 22-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS05650 56f6b3961e3ec42853184d29b70b041e 431 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 419 2.0E-98 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RM11_RS05650 56f6b3961e3ec42853184d29b70b041e 431 Gene3D G3DSA:3.65.10.10 21 229 1.2E-66 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RM11_RS05650 56f6b3961e3ec42853184d29b70b041e 431 SUPERFAMILY SSF55205 1 429 1.7E-131 T 22-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RM11_RS05650 56f6b3961e3ec42853184d29b70b041e 431 PANTHER PTHR21090 1 430 1.8E-165 T 22-04-2016 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 Pfam PF01926 50S ribosome-binding GTPase 162 275 1.7E-21 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 PIRSF PIRSF002401 1 340 1.5E-125 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 Gene3D G3DSA:2.70.210.12 2 155 8.8E-56 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 22-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 Hamap MF_01454 GTPase Obg [obg]. 2 327 44.713 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 SUPERFAMILY SSF82051 2 158 1.44E-54 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 PANTHER PTHR11702:SF3 1 341 8.4E-137 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 SUPERFAMILY SSF52540 151 330 3.79E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 321 3.4E-131 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 PANTHER PTHR11702 1 341 8.4E-137 T 22-04-2016 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 8.1E-32 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 8.1E-32 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 8.1E-32 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 8.1E-32 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 Pfam PF01018 GTP1/OBG 3 158 2.2E-57 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RM11_RS00715 6122d026b613487f0253d85d0ad255f0 341 Gene3D G3DSA:3.40.50.300 160 327 2.4E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03340 df0d7b6bb9862ecefa1b23558ed265a7 161 SUPERFAMILY SSF54211 36 161 7.59E-47 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS03340 df0d7b6bb9862ecefa1b23558ed265a7 161 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 32 161 32.278 T 22-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid RM11_RS03340 df0d7b6bb9862ecefa1b23558ed265a7 161 PANTHER PTHR21569 26 161 5.1E-65 T 22-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RM11_RS03340 df0d7b6bb9862ecefa1b23558ed265a7 161 Gene3D G3DSA:3.30.230.10 35 161 1.8E-51 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RM11_RS03340 df0d7b6bb9862ecefa1b23558ed265a7 161 ProSitePatterns PS00360 Ribosomal protein S9 signature. 100 118 - T 22-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 RM11_RS03340 df0d7b6bb9862ecefa1b23558ed265a7 161 PANTHER PTHR21569:SF1 26 161 5.1E-65 T 22-04-2016 RM11_RS03340 df0d7b6bb9862ecefa1b23558ed265a7 161 Pfam PF00380 Ribosomal protein S9/S16 41 161 9.7E-48 T 22-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 PANTHER PTHR30621 15 954 1.5E-219 T 22-04-2016 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 SUPERFAMILY SSF81593 828 972 2.12E-26 T 22-04-2016 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 48 959 17.788 T 22-04-2016 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 SUPERFAMILY SSF81593 308 460 1.65E-40 T 22-04-2016 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 SUPERFAMILY SSF81301 37 307 6.54E-63 T 22-04-2016 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 SUPERFAMILY SSF81301 544 823 1.28E-71 T 22-04-2016 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 Pfam PF08335 GlnD PII-uridylyltransferase 321 460 3.6E-39 T 22-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 Gene3D G3DSA:3.30.460.10 659 820 5.2E-46 T 22-04-2016 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 Gene3D G3DSA:3.30.460.10 136 306 4.3E-45 T 22-04-2016 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 572 816 6.7E-66 T 22-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RM11_RS02055 7d1e423614671bc3fc06687fe0d3951e 974 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 53 298 3.1E-58 T 22-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RM11_RS00270 421a5764f4542e8a1ec0067abd819b7e 98 SUPERFAMILY SSF55594 12 96 8.37E-25 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00270 421a5764f4542e8a1ec0067abd819b7e 98 PRINTS PR00107 Phosphocarrier protein signature 22 38 2.2E-11 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00270 421a5764f4542e8a1ec0067abd819b7e 98 PRINTS PR00107 Phosphocarrier protein signature 62 79 2.2E-11 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00270 421a5764f4542e8a1ec0067abd819b7e 98 PRINTS PR00107 Phosphocarrier protein signature 47 62 2.2E-11 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00270 421a5764f4542e8a1ec0067abd819b7e 98 PANTHER PTHR33705:SF2 9 98 4.0E-34 T 22-04-2016 RM11_RS00270 421a5764f4542e8a1ec0067abd819b7e 98 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 22 29 - T 22-04-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RM11_RS00270 421a5764f4542e8a1ec0067abd819b7e 98 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 11 91 1.7E-25 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00270 421a5764f4542e8a1ec0067abd819b7e 98 PANTHER PTHR33705 9 98 4.0E-34 T 22-04-2016 RM11_RS00270 421a5764f4542e8a1ec0067abd819b7e 98 Gene3D G3DSA:3.30.1340.10 11 96 1.2E-27 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00270 421a5764f4542e8a1ec0067abd819b7e 98 Pfam PF00381 PTS HPr component phosphorylation site 12 91 2.7E-22 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00370 b01bea6e21077d0d5c6481446ab8b00f 143 PANTHER PTHR11527:SF122 32 143 7.7E-23 T 22-04-2016 RM11_RS00370 b01bea6e21077d0d5c6481446ab8b00f 143 PANTHER PTHR11527 32 143 7.7E-23 T 22-04-2016 IPR031107 Small heat shock protein HSP20 RM11_RS00370 b01bea6e21077d0d5c6481446ab8b00f 143 Gene3D G3DSA:2.60.40.790 44 139 4.6E-12 T 22-04-2016 IPR008978 HSP20-like chaperone RM11_RS00370 b01bea6e21077d0d5c6481446ab8b00f 143 SUPERFAMILY SSF49764 35 136 3.49E-16 T 22-04-2016 IPR008978 HSP20-like chaperone RM11_RS00370 b01bea6e21077d0d5c6481446ab8b00f 143 Pfam PF00011 Hsp20/alpha crystallin family 44 136 1.2E-15 T 22-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RM11_RS05145 21fbee27e23e85878dc0696b30bc3eb2 1086 Gene3D G3DSA:2.40.128.130 768 1086 4.8E-37 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05145 21fbee27e23e85878dc0696b30bc3eb2 1086 Gene3D G3DSA:2.160.20.20 272 749 9.6E-21 T 22-04-2016 IPR012332 P22 tailspike C-terminal domain-like RM11_RS05145 21fbee27e23e85878dc0696b30bc3eb2 1086 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 627 1086 5.9E-34 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RM11_RS05145 21fbee27e23e85878dc0696b30bc3eb2 1086 SUPERFAMILY SSF103515 790 1086 1.57E-36 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05145 21fbee27e23e85878dc0696b30bc3eb2 1086 SUPERFAMILY SSF51126 219 729 4.4E-10 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor RM11_RS05145 21fbee27e23e85878dc0696b30bc3eb2 1086 SMART SM00869 812 1073 3.6E-30 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05145 21fbee27e23e85878dc0696b30bc3eb2 1086 Pfam PF03797 Autotransporter beta-domain 815 1068 2.3E-20 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS00390 b909f4c16754a7d2438eabc53d6a3f3c 361 PANTHER PTHR11538 92 341 2.4E-92 T 22-04-2016 RM11_RS00390 b909f4c16754a7d2438eabc53d6a3f3c 361 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 2.3E-15 T 22-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RM11_RS00390 b909f4c16754a7d2438eabc53d6a3f3c 361 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 40 343 4.8E-96 T 22-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RM11_RS00390 b909f4c16754a7d2438eabc53d6a3f3c 361 Gene3D G3DSA:3.30.930.10 10 344 4.1E-119 T 22-04-2016 RM11_RS00390 b909f4c16754a7d2438eabc53d6a3f3c 361 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 344 43.484 T 22-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 RM11_RS00390 b909f4c16754a7d2438eabc53d6a3f3c 361 Pfam PF01409 tRNA synthetases class II core domain (F) 92 343 2.4E-100 T 22-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RM11_RS00390 b909f4c16754a7d2438eabc53d6a3f3c 361 SUPERFAMILY SSF55681 100 345 1.85E-75 T 22-04-2016 RM11_RS00390 b909f4c16754a7d2438eabc53d6a3f3c 361 SUPERFAMILY SSF46589 14 99 4.03E-17 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RM11_RS03750 907545d77a1bc5ca4a0878200e55be81 79 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 2 78 4.9E-31 T 22-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03750 907545d77a1bc5ca4a0878200e55be81 79 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 1 78 21.194 T 22-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03750 907545d77a1bc5ca4a0878200e55be81 79 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 9 78 8.0E-26 T 22-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03750 907545d77a1bc5ca4a0878200e55be81 79 Gene3D G3DSA:3.30.1280.10 1 78 3.6E-33 T 22-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03750 907545d77a1bc5ca4a0878200e55be81 79 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 1 78 4.0E-27 T 22-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03750 907545d77a1bc5ca4a0878200e55be81 79 SUPERFAMILY SSF82697 1 78 3.14E-28 T 22-04-2016 RM11_RS03750 907545d77a1bc5ca4a0878200e55be81 79 PANTHER PTHR34696 1 78 1.1E-29 T 22-04-2016 RM11_RS04195 4907450566b75e62dcbde8c5ae8ae7d8 224 PANTHER PTHR11579:SF0 1 180 7.0E-21 T 22-04-2016 RM11_RS04195 4907450566b75e62dcbde8c5ae8ae7d8 224 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 10 202 7.5E-30 T 22-04-2016 RM11_RS04195 4907450566b75e62dcbde8c5ae8ae7d8 224 Gene3D G3DSA:3.40.50.150 12 220 5.7E-39 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS04195 4907450566b75e62dcbde8c5ae8ae7d8 224 SUPERFAMILY SSF53335 4 187 3.03E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS04195 4907450566b75e62dcbde8c5ae8ae7d8 224 PANTHER PTHR11579 1 180 7.0E-21 T 22-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RM11_RS01840 422823b3ccca3175af6dffb9bd1504ab 311 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 20 304 19.298 T 22-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RM11_RS01840 422823b3ccca3175af6dffb9bd1504ab 311 Pfam PF01040 UbiA prenyltransferase family 36 288 8.7E-54 T 22-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RM11_RS01840 422823b3ccca3175af6dffb9bd1504ab 311 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 23 302 8.6E-96 T 22-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RM11_RS01840 422823b3ccca3175af6dffb9bd1504ab 311 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 74 96 - T 22-04-2016 IPR030470 UbiA prenyltransferase conserved site RM11_RS01840 422823b3ccca3175af6dffb9bd1504ab 311 PANTHER PTHR11048:SF3 21 307 2.1E-66 T 22-04-2016 RM11_RS01840 422823b3ccca3175af6dffb9bd1504ab 311 PANTHER PTHR11048 21 307 2.1E-66 T 22-04-2016 RM11_RS01865 8d6a824866c05968e1c52dcc976f30c6 194 PANTHER PTHR30327:SF1 10 194 3.4E-48 T 22-04-2016 RM11_RS01865 8d6a824866c05968e1c52dcc976f30c6 194 Gene3D G3DSA:3.30.70.1300 49 137 6.4E-23 T 22-04-2016 RM11_RS01865 8d6a824866c05968e1c52dcc976f30c6 194 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 6 194 33.437 T 22-04-2016 IPR003774 Protein of unknown function UPF0301 RM11_RS01865 8d6a824866c05968e1c52dcc976f30c6 194 PANTHER PTHR30327 10 194 3.4E-48 T 22-04-2016 RM11_RS01865 8d6a824866c05968e1c52dcc976f30c6 194 Gene3D G3DSA:3.40.1740.10 138 184 1.1E-30 T 22-04-2016 RM11_RS01865 8d6a824866c05968e1c52dcc976f30c6 194 Gene3D G3DSA:3.40.1740.10 7 45 1.1E-30 T 22-04-2016 RM11_RS01865 8d6a824866c05968e1c52dcc976f30c6 194 SUPERFAMILY SSF143456 8 194 1.57E-56 T 22-04-2016 RM11_RS01865 8d6a824866c05968e1c52dcc976f30c6 194 Pfam PF02622 Uncharacterized ACR, COG1678 17 181 8.6E-41 T 22-04-2016 IPR003774 Protein of unknown function UPF0301 RM11_RS02225 bd2e17123797813c08fd03393fa2b404 288 PANTHER PTHR22602:SF0 13 256 6.0E-44 T 22-04-2016 RM11_RS02225 bd2e17123797813c08fd03393fa2b404 288 Pfam PF01571 Aminomethyltransferase folate-binding domain 15 89 2.8E-7 T 22-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RM11_RS02225 bd2e17123797813c08fd03393fa2b404 288 Gene3D G3DSA:3.30.70.1400 13 97 2.0E-22 T 22-04-2016 RM11_RS02225 bd2e17123797813c08fd03393fa2b404 288 PANTHER PTHR22602 13 256 6.0E-44 T 22-04-2016 RM11_RS02225 bd2e17123797813c08fd03393fa2b404 288 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 148 213 3.9E-24 T 22-04-2016 IPR017703 YgfZ/GcvT conserved site RM11_RS02225 bd2e17123797813c08fd03393fa2b404 288 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 188 272 3.5E-5 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RM11_RS02225 bd2e17123797813c08fd03393fa2b404 288 SUPERFAMILY SSF103025 8 202 8.32E-44 T 22-04-2016 RM11_RS06380 b9b9a1aed3ec9526d5e8d6c03b5ba957 92 PANTHER PTHR12735:SF24 9 88 2.5E-18 T 22-04-2016 RM11_RS06380 b9b9a1aed3ec9526d5e8d6c03b5ba957 92 PIRSF PIRSF003113 1 91 7.8E-23 T 22-04-2016 IPR002634 BolA protein RM11_RS06380 b9b9a1aed3ec9526d5e8d6c03b5ba957 92 Gene3D G3DSA:3.30.70.1500 5 89 2.9E-25 T 22-04-2016 RM11_RS06380 b9b9a1aed3ec9526d5e8d6c03b5ba957 92 SUPERFAMILY SSF82657 8 88 2.09E-19 T 22-04-2016 IPR002634 BolA protein RM11_RS06380 b9b9a1aed3ec9526d5e8d6c03b5ba957 92 Pfam PF01722 BolA-like protein 13 89 2.0E-25 T 22-04-2016 IPR002634 BolA protein RM11_RS06380 b9b9a1aed3ec9526d5e8d6c03b5ba957 92 PANTHER PTHR12735 9 88 2.5E-18 T 22-04-2016 RM11_RS01800 90a156a5001ef944dea81f8741af2d92 368 PIRSF PIRSF001259 3 368 1.5E-111 T 22-04-2016 RM11_RS01800 90a156a5001ef944dea81f8741af2d92 368 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 11 200 5.9E-77 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS01800 90a156a5001ef944dea81f8741af2d92 368 SUPERFAMILY SSF142695 207 364 2.88E-35 T 22-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RM11_RS01800 90a156a5001ef944dea81f8741af2d92 368 Gene3D G3DSA:3.90.870.10 6 211 2.0E-85 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RM11_RS01800 90a156a5001ef944dea81f8741af2d92 368 PANTHER PTHR21327 11 362 2.0E-133 T 22-04-2016 RM11_RS01800 90a156a5001ef944dea81f8741af2d92 368 SUPERFAMILY SSF55821 7 204 5.26E-74 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RM11_RS01800 90a156a5001ef944dea81f8741af2d92 368 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 7 201 1.0E-68 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RM11_RS01800 90a156a5001ef944dea81f8741af2d92 368 Pfam PF00925 GTP cyclohydrolase II 211 363 3.4E-21 T 22-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RM11_RS01800 90a156a5001ef944dea81f8741af2d92 368 PANTHER PTHR21327:SF10 11 362 2.0E-133 T 22-04-2016 RM11_RS03440 92b3cdc00dac910fbcd3a345b3df2380 250 Gene3D G3DSA:3.40.190.10 111 202 6.6E-21 T 22-04-2016 RM11_RS03440 92b3cdc00dac910fbcd3a345b3df2380 250 SMART SM00062 23 248 1.9E-56 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RM11_RS03440 92b3cdc00dac910fbcd3a345b3df2380 250 SUPERFAMILY SSF53850 3 249 1.45E-63 T 22-04-2016 RM11_RS03440 92b3cdc00dac910fbcd3a345b3df2380 250 PANTHER PTHR18966:SF152 16 246 2.8E-47 T 22-04-2016 RM11_RS03440 92b3cdc00dac910fbcd3a345b3df2380 250 PANTHER PTHR18966 16 246 2.8E-47 T 22-04-2016 RM11_RS03440 92b3cdc00dac910fbcd3a345b3df2380 250 Gene3D G3DSA:3.40.190.10 207 249 6.7E-43 T 22-04-2016 RM11_RS03440 92b3cdc00dac910fbcd3a345b3df2380 250 Gene3D G3DSA:3.40.190.10 21 109 6.7E-43 T 22-04-2016 RM11_RS03440 92b3cdc00dac910fbcd3a345b3df2380 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 24 246 1.4E-58 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RM11_RS02560 691c6ead651251ab666d887458b570c5 148 Pfam PF02082 Transcriptional regulator 1 81 1.7E-24 T 22-04-2016 IPR000944 Transcription regulator Rrf2-type RM11_RS02560 691c6ead651251ab666d887458b570c5 148 Gene3D G3DSA:1.10.10.10 1 137 1.0E-40 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS02560 691c6ead651251ab666d887458b570c5 148 SUPERFAMILY SSF46785 2 133 1.12E-35 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS02560 691c6ead651251ab666d887458b570c5 148 PANTHER PTHR33221:SF4 2 130 7.2E-38 T 22-04-2016 RM11_RS02560 691c6ead651251ab666d887458b570c5 148 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 4.8E-33 T 22-04-2016 IPR000944 Transcription regulator Rrf2-type RM11_RS02560 691c6ead651251ab666d887458b570c5 148 PANTHER PTHR33221 2 130 7.2E-38 T 22-04-2016 RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 PIRSF PIRSF006809 14 447 1.0E-137 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 Gene3D G3DSA:3.40.50.300 213 392 2.2E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 SUPERFAMILY SSF52540 217 396 5.32E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 287 305 1.21E-7 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 241 259 1.21E-7 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 220 240 1.21E-7 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 Pfam PF01926 50S ribosome-binding GTPase 220 322 4.9E-18 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 PANTHER PTHR10229:SF0 4 435 4.7E-152 T 22-04-2016 RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 Pfam PF16360 GTP-binding GTPase Middle Region 133 212 2.3E-28 T 22-04-2016 IPR032305 GTP-binding protein, middle domain RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 Pfam PF13167 GTP-binding GTPase N-terminal 45 130 3.2E-23 T 22-04-2016 IPR025121 GTPase HflX, N-terminal RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 PANTHER PTHR10229 4 435 4.7E-152 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 Hamap MF_00900 GTPase HflX [hflX]. 46 415 43.258 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 RM11_RS02725 c2994b9d5a1fc11cf75faac6a4282b36 447 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 43 385 6.4E-129 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 3.5E-92 T 22-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 SUPERFAMILY SSF54821 108 206 8.37E-40 T 22-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 Gene3D G3DSA:3.30.1140.32 108 207 1.9E-46 T 22-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.865 T 22-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 SMART SM00322 60 125 6.4E-9 T 22-04-2016 IPR004087 K Homology domain GO:0003676 RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 Pfam PF07650 KH domain 39 110 3.1E-17 T 22-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 Gene3D G3DSA:3.30.300.20 17 106 5.2E-31 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 PANTHER PTHR11760 2 209 7.2E-125 T 22-04-2016 RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 6.0E-40 T 22-04-2016 RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 22-04-2016 IPR018280 Ribosomal protein S3, conserved site RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 PANTHER PTHR11760:SF19 2 209 7.2E-125 T 22-04-2016 RM11_RS04095 2cf13017627172da2461f8e1507c31a1 236 SUPERFAMILY SSF54814 2 106 2.01E-36 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RM11_RS02715 c980358f811a51f5ebd7660fe0fcfd20 1520 SUPERFAMILY SSF58113 269 405 3.66E-5 T 22-04-2016 RM11_RS02715 c980358f811a51f5ebd7660fe0fcfd20 1520 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 385 1484 1.0E-8 T 22-04-2016 RM11_RS02715 c980358f811a51f5ebd7660fe0fcfd20 1520 Pfam PF01442 Apolipoprotein A1/A4/E domain 1177 1317 7.9E-5 T 22-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RM11_RS02715 c980358f811a51f5ebd7660fe0fcfd20 1520 Pfam PF01442 Apolipoprotein A1/A4/E domain 1015 1202 2.3E-4 T 22-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RM11_RS02715 c980358f811a51f5ebd7660fe0fcfd20 1520 Pfam PF01442 Apolipoprotein A1/A4/E domain 282 423 1.7E-5 T 22-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RM11_RS02715 c980358f811a51f5ebd7660fe0fcfd20 1520 Pfam PF01442 Apolipoprotein A1/A4/E domain 420 588 0.062 T 22-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RM11_RS02715 c980358f811a51f5ebd7660fe0fcfd20 1520 Pfam PF01442 Apolipoprotein A1/A4/E domain 754 826 0.25 T 22-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RM11_RS02715 c980358f811a51f5ebd7660fe0fcfd20 1520 Pfam PF01442 Apolipoprotein A1/A4/E domain 802 1014 0.057 T 22-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RM11_RS02715 c980358f811a51f5ebd7660fe0fcfd20 1520 Pfam PF01442 Apolipoprotein A1/A4/E domain 583 758 1.2E-5 T 22-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RM11_RS04035 018f74811514f1135168102885472ec2 68 SUPERFAMILY SSF55129 10 64 4.06E-15 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RM11_RS04035 018f74811514f1135168102885472ec2 68 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 9 66 14.71 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RM11_RS04035 018f74811514f1135168102885472ec2 68 Pfam PF00327 Ribosomal protein L30p/L7e 14 62 4.6E-11 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RM11_RS04035 018f74811514f1135168102885472ec2 68 Gene3D G3DSA:3.30.1390.20 10 66 2.1E-22 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RM11_RS04035 018f74811514f1135168102885472ec2 68 PIRSF PIRSF002211 6 67 8.2E-18 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RM11_RS04035 018f74811514f1135168102885472ec2 68 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 13 65 1.0E-18 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RM11_RS01810 ea41832007791a02282750335f6cf858 640 Gene3D G3DSA:3.40.50.970 25 200 3.5E-75 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS01810 ea41832007791a02282750335f6cf858 640 Gene3D G3DSA:3.40.50.970 242 335 3.5E-75 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS01810 ea41832007791a02282750335f6cf858 640 Gene3D G3DSA:3.40.50.970 336 497 5.0E-36 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS01810 ea41832007791a02282750335f6cf858 640 PANTHER PTHR11624 22 217 0.0 T 22-04-2016 IPR033247 Transketolase family RM11_RS01810 ea41832007791a02282750335f6cf858 640 PANTHER PTHR11624:SF20 22 217 0.0 T 22-04-2016 RM11_RS01810 ea41832007791a02282750335f6cf858 640 SMART SM00861 320 485 7.1E-66 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RM11_RS01810 ea41832007791a02282750335f6cf858 640 Pfam PF02779 Transketolase, pyrimidine binding domain 319 480 2.3E-41 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RM11_RS01810 ea41832007791a02282750335f6cf858 640 PANTHER PTHR11624 241 640 0.0 T 22-04-2016 IPR033247 Transketolase family RM11_RS01810 ea41832007791a02282750335f6cf858 640 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 14 627 2.9E-245 T 22-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RM11_RS01810 ea41832007791a02282750335f6cf858 640 PANTHER PTHR11624:SF20 241 640 0.0 T 22-04-2016 RM11_RS01810 ea41832007791a02282750335f6cf858 640 SUPERFAMILY SSF52922 492 628 7.59E-31 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RM11_RS01810 ea41832007791a02282750335f6cf858 640 ProSitePatterns PS00801 Transketolase signature 1. 34 53 - T 22-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RM11_RS01810 ea41832007791a02282750335f6cf858 640 Pfam PF02780 Transketolase, C-terminal domain 497 620 7.5E-28 T 22-04-2016 IPR033248 Transketolase, C-terminal domain RM11_RS01810 ea41832007791a02282750335f6cf858 640 SUPERFAMILY SSF52518 317 506 7.57E-60 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS01810 ea41832007791a02282750335f6cf858 640 SUPERFAMILY SSF52518 243 382 1.36E-78 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS01810 ea41832007791a02282750335f6cf858 640 SUPERFAMILY SSF52518 5 198 1.36E-78 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS01810 ea41832007791a02282750335f6cf858 640 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 8 629 45.031 T 22-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RM11_RS01810 ea41832007791a02282750335f6cf858 640 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 9 283 1.3E-117 T 22-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RM11_RS01810 ea41832007791a02282750335f6cf858 640 Gene3D G3DSA:3.40.50.920 498 627 3.6E-32 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 Gene3D G3DSA:3.40.50.300 315 530 1.0E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 Gene3D G3DSA:3.40.50.300 9 279 1.4E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 SUPERFAMILY SSF52540 303 516 9.84E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 PANTHER PTHR19211 1 549 0.0 T 22-04-2016 RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 Pfam PF00005 ABC transporter 334 467 1.3E-23 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 Pfam PF00005 ABC transporter 22 185 2.6E-26 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 SMART SM00382 31 319 3.2E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 SMART SM00382 342 513 1.8E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 SUPERFAMILY SSF52540 9 238 3.11E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 PANTHER PTHR19211:SF7 1 549 0.0 T 22-04-2016 RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 4 547 9.4E-272 T 22-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 Pfam PF12848 ABC transporter 224 297 1.5E-12 T 22-04-2016 IPR032781 ABC-transporter extension domain RM11_RS04490 c11690271405830e87fc7c9db4137f7e 549 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS06045 6d5d766b1aafcd3e9dd0907ab28ddb6b 112 SUPERFAMILY SSF54862 3 106 4.79E-26 T 22-04-2016 RM11_RS06045 6d5d766b1aafcd3e9dd0907ab28ddb6b 112 PANTHER PTHR11938 1 83 1.5E-33 T 22-04-2016 RM11_RS06045 6d5d766b1aafcd3e9dd0907ab28ddb6b 112 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.0E-18 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RM11_RS06045 6d5d766b1aafcd3e9dd0907ab28ddb6b 112 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.0E-18 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RM11_RS06045 6d5d766b1aafcd3e9dd0907ab28ddb6b 112 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.0E-18 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RM11_RS06045 6d5d766b1aafcd3e9dd0907ab28ddb6b 112 Pfam PF00037 4Fe-4S binding domain 34 56 3.4E-7 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RM11_RS06045 6d5d766b1aafcd3e9dd0907ab28ddb6b 112 Pfam PF11953 Domain of unknown function (DUF3470) 64 105 3.4E-17 T 22-04-2016 IPR022569 Ferredoxin, C-terminal RM11_RS06045 6d5d766b1aafcd3e9dd0907ab28ddb6b 112 PANTHER PTHR11938:SF101 1 83 1.5E-33 T 22-04-2016 RM11_RS06045 6d5d766b1aafcd3e9dd0907ab28ddb6b 112 Gene3D G3DSA:3.30.70.20 3 93 1.3E-21 T 22-04-2016 RM11_RS06045 6d5d766b1aafcd3e9dd0907ab28ddb6b 112 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RM11_RS00915 1d2fb17df5b3806577e6089a55520cad 138 SUPERFAMILY SSF46785 6 134 9.09E-38 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS00915 1d2fb17df5b3806577e6089a55520cad 138 Gene3D G3DSA:1.10.10.10 6 83 9.7E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS00915 1d2fb17df5b3806577e6089a55520cad 138 PANTHER PTHR33202 5 133 4.5E-32 T 22-04-2016 RM11_RS00915 1d2fb17df5b3806577e6089a55520cad 138 Pfam PF01475 Ferric uptake regulator family 14 132 3.7E-39 T 22-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RM11_RS03975 38c182a43054dccc63452ff5fffb4c57 595 SUPERFAMILY SSF90123 9 299 4.32E-47 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RM11_RS03975 38c182a43054dccc63452ff5fffb4c57 595 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS03975 38c182a43054dccc63452ff5fffb4c57 595 Gene3D G3DSA:1.20.1560.10 9 312 2.6E-41 T 22-04-2016 RM11_RS03975 38c182a43054dccc63452ff5fffb4c57 595 TIGRFAM TIGR01192 chvA: glucan exporter ATP-binding protein 1 581 0.0 T 22-04-2016 IPR005896 Glucan exporter ATP-binding protein, NdvA GO:0005886|GO:0015441|GO:0015775 RM11_RS03975 38c182a43054dccc63452ff5fffb4c57 595 Pfam PF00005 ABC transporter 353 500 1.4E-36 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS03975 38c182a43054dccc63452ff5fffb4c57 595 Pfam PF00664 ABC transporter transmembrane region 23 287 5.3E-39 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RM11_RS03975 38c182a43054dccc63452ff5fffb4c57 595 Gene3D G3DSA:3.40.50.300 334 565 9.2E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03975 38c182a43054dccc63452ff5fffb4c57 595 SMART SM00382 360 546 3.6E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS03975 38c182a43054dccc63452ff5fffb4c57 595 PANTHER PTHR24221 9 569 6.5E-172 T 22-04-2016 RM11_RS03975 38c182a43054dccc63452ff5fffb4c57 595 SUPERFAMILY SSF52540 324 568 5.55E-85 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01405 298a9dbf5fd2bee300fb9e4ec619893e 476 Gene3D G3DSA:3.40.605.10 4 260 2.3E-80 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RM11_RS01405 298a9dbf5fd2bee300fb9e4ec619893e 476 Pfam PF00171 Aldehyde dehydrogenase family 15 473 8.9E-152 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RM11_RS01405 298a9dbf5fd2bee300fb9e4ec619893e 476 SUPERFAMILY SSF53720 4 475 3.14E-147 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RM11_RS01405 298a9dbf5fd2bee300fb9e4ec619893e 476 PANTHER PTHR11699 1 476 1.7E-191 T 22-04-2016 RM11_RS01405 298a9dbf5fd2bee300fb9e4ec619893e 476 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RM11_RS01405 298a9dbf5fd2bee300fb9e4ec619893e 476 PANTHER PTHR11699:SF214 1 476 1.7E-191 T 22-04-2016 RM11_RS01405 298a9dbf5fd2bee300fb9e4ec619893e 476 Gene3D G3DSA:3.40.309.10 261 441 1.9E-63 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RM11_RS03420 b0d8593b4503e10a73b34e9c4b71937e 234 SUPERFAMILY SSF75445 128 210 9.68E-19 T 22-04-2016 RM11_RS03420 b0d8593b4503e10a73b34e9c4b71937e 234 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 7 225 2.9E-72 T 22-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RM11_RS03420 b0d8593b4503e10a73b34e9c4b71937e 234 PANTHER PTHR11934 1 234 7.1E-89 T 22-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RM11_RS03420 b0d8593b4503e10a73b34e9c4b71937e 234 Gene3D G3DSA:3.40.50.1360 5 138 5.9E-54 T 22-04-2016 RM11_RS03420 b0d8593b4503e10a73b34e9c4b71937e 234 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 229 30.156 T 22-04-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RM11_RS03420 b0d8593b4503e10a73b34e9c4b71937e 234 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 51 224 4.5E-54 T 22-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RM11_RS03420 b0d8593b4503e10a73b34e9c4b71937e 234 SUPERFAMILY SSF100950 1 145 4.0E-42 T 22-04-2016 RM11_RS03420 b0d8593b4503e10a73b34e9c4b71937e 234 Gene3D G3DSA:3.30.70.260 139 208 1.5E-20 T 22-04-2016 RM11_RS02790 efb33b09fc92279f1668a2190f90a59a 324 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 324 67.966 T 22-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RM11_RS02790 efb33b09fc92279f1668a2190f90a59a 324 SUPERFAMILY SSF53901 6 324 5.21E-68 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02790 efb33b09fc92279f1668a2190f90a59a 324 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 4 324 8.7E-121 T 22-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RM11_RS02790 efb33b09fc92279f1668a2190f90a59a 324 Gene3D G3DSA:3.40.47.10 162 324 1.7E-53 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02790 efb33b09fc92279f1668a2190f90a59a 324 PANTHER PTHR18919 27 324 1.1E-129 T 22-04-2016 RM11_RS02790 efb33b09fc92279f1668a2190f90a59a 324 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 236 324 4.0E-36 T 22-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RM11_RS02790 efb33b09fc92279f1668a2190f90a59a 324 PANTHER PTHR18919:SF109 27 324 1.1E-129 T 22-04-2016 RM11_RS02790 efb33b09fc92279f1668a2190f90a59a 324 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 191 4.9E-31 T 22-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RM11_RS02790 efb33b09fc92279f1668a2190f90a59a 324 Gene3D G3DSA:3.40.47.10 2 161 2.4E-63 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 SMART SM00411 6 95 1.8E-21 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 PANTHER PTHR33175 6 99 7.5E-40 T 22-04-2016 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 SUPERFAMILY SSF47729 6 94 5.89E-25 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 Gene3D G3DSA:4.10.520.10 5 96 1.3E-25 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 Pfam PF00216 Bacterial DNA-binding protein 6 94 6.9E-23 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 4 100 25.96 T 22-04-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 51 70 - T 22-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 PANTHER PTHR33175:SF2 6 99 7.5E-40 T 22-04-2016 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 PRINTS PR01727 Prokaryotic integration host factor signature 79 93 1.5E-10 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 PRINTS PR01727 Prokaryotic integration host factor signature 45 60 1.5E-10 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS02795 d6e796c7001223d57138234acf1174c6 104 PRINTS PR01727 Prokaryotic integration host factor signature 63 76 1.5E-10 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS06645 78b37b576ce4440164995032e980c781 93 PANTHER PTHR34702 1 93 8.7E-13 T 22-04-2016 RM11_RS06645 78b37b576ce4440164995032e980c781 93 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 35 87 6.5E-16 T 22-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RM11_RS01245 a326d99a49cbd3fe9c9fb1e9cedb2f92 443 PANTHER PTHR30624:SF1 1 443 6.4E-106 T 22-04-2016 RM11_RS01245 a326d99a49cbd3fe9c9fb1e9cedb2f92 443 SUPERFAMILY SSF111283 8 441 9.16E-109 T 22-04-2016 RM11_RS01245 a326d99a49cbd3fe9c9fb1e9cedb2f92 443 PANTHER PTHR30624 1 443 6.4E-106 T 22-04-2016 RM11_RS01245 a326d99a49cbd3fe9c9fb1e9cedb2f92 443 Pfam PF01523 Putative modulator of DNA gyrase 25 313 2.2E-45 T 22-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RM11_RS00995 a1071f8dd074335b173b041e12fa36e6 135 Pfam PF02033 Ribosome-binding factor A 9 118 2.2E-22 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RM11_RS00995 a1071f8dd074335b173b041e12fa36e6 135 SUPERFAMILY SSF89919 5 120 1.44E-25 T 22-04-2016 IPR023799 Ribosome-binding factor A domain RM11_RS00995 a1071f8dd074335b173b041e12fa36e6 135 Gene3D G3DSA:3.30.300.20 5 110 1.6E-24 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RM11_RS00995 a1071f8dd074335b173b041e12fa36e6 135 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 8 120 9.7E-15 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RM11_RS00995 a1071f8dd074335b173b041e12fa36e6 135 ProSitePatterns PS01319 Ribosome-binding factor A signature. 83 105 - T 22-04-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 RM11_RS00995 a1071f8dd074335b173b041e12fa36e6 135 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 5 125 17.821 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RM11_RS00995 a1071f8dd074335b173b041e12fa36e6 135 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 12 105 3.0E-49 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RM11_RS00995 a1071f8dd074335b173b041e12fa36e6 135 PANTHER PTHR33515 4 119 8.7E-23 T 22-04-2016 RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 Gene3D G3DSA:2.10.109.10 184 235 1.7E-48 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 Gene3D G3DSA:2.10.109.10 32 116 1.7E-48 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 Pfam PF00717 Peptidase S24-like 43 130 1.0E-22 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 ProSitePatterns PS00760 Signal peptidases I lysine active site. 108 120 - T 22-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 ProSitePatterns PS00761 Signal peptidases I signature 3. 189 202 - T 22-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 SUPERFAMILY SSF51306 34 249 6.8E-63 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 184 203 6.3E-24 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 106 118 6.3E-24 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 36 52 6.3E-24 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 PANTHER PTHR12383:SF27 85 263 6.1E-75 T 22-04-2016 RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 PANTHER PTHR12383:SF27 1 68 6.1E-75 T 22-04-2016 RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 20 225 5.6E-54 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 PANTHER PTHR12383 85 263 6.1E-75 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RM11_RS02190 e5dd4b268a94110ed92e6ccd6e83f9f1 270 PANTHER PTHR12383 1 68 6.1E-75 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 Pfam PF02779 Transketolase, pyrimidine binding domain 131 305 5.0E-51 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 PANTHER PTHR11624 34 454 5.0E-173 T 22-04-2016 IPR033247 Transketolase family RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 Gene3D G3DSA:3.40.50.920 325 448 2.1E-43 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 Gene3D G3DSA:2.40.50.100 1 91 1.8E-32 T 22-04-2016 RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 SMART SM00861 131 306 8.0E-66 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 SUPERFAMILY SSF51230 1 91 5.37E-28 T 22-04-2016 IPR011053 Single hybrid motif RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 SUPERFAMILY SSF52922 315 450 4.06E-40 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 Pfam PF00364 Biotin-requiring enzyme 4 77 3.9E-20 T 22-04-2016 IPR000089 Biotin/lipoyl attachment RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 SUPERFAMILY SSF52518 130 320 1.23E-69 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 Gene3D G3DSA:3.40.50.970 129 323 1.0E-97 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 PANTHER PTHR11624:SF11 34 454 5.0E-173 T 22-04-2016 RM11_RS02525 4d1411cbf34d578e079669f0cf84ab0d 454 Pfam PF02780 Transketolase, C-terminal domain 321 443 3.1E-38 T 22-04-2016 IPR033248 Transketolase, C-terminal domain RM11_RS04385 e05a6ac7e3414bbf8539ade3204401fa 297 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 18 258 37.515 T 22-04-2016 IPR017689 Outer membrane protein assembly factor BamD RM11_RS04385 e05a6ac7e3414bbf8539ade3204401fa 297 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 24 263 1.8E-78 T 22-04-2016 IPR017689 Outer membrane protein assembly factor BamD RM11_RS04385 e05a6ac7e3414bbf8539ade3204401fa 297 PANTHER PTHR37423 56 288 1.9E-54 T 22-04-2016 RM11_RS04385 e05a6ac7e3414bbf8539ade3204401fa 297 Pfam PF13525 Outer membrane lipoprotein 55 251 6.9E-48 T 22-04-2016 RM11_RS04385 e05a6ac7e3414bbf8539ade3204401fa 297 Gene3D G3DSA:1.25.40.10 55 249 2.2E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS04385 e05a6ac7e3414bbf8539ade3204401fa 297 SUPERFAMILY SSF48452 55 184 1.56E-8 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS06270 fafe2bc0f2b7b16a67adc9537b5c0869 823 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 11 814 3.7E-285 T 22-04-2016 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 RM11_RS06270 fafe2bc0f2b7b16a67adc9537b5c0869 823 Gene3D G3DSA:3.40.50.300 647 718 3.9E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06270 fafe2bc0f2b7b16a67adc9537b5c0869 823 Gene3D G3DSA:3.40.50.300 444 574 3.9E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06270 fafe2bc0f2b7b16a67adc9537b5c0869 823 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 178 382 1.2E-39 T 22-04-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 RM11_RS06270 fafe2bc0f2b7b16a67adc9537b5c0869 823 SUPERFAMILY SSF52540 387 754 1.1E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 432 5.4E-155 T 22-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 Gene3D G3DSA:1.10.40.30 360 432 3.0E-37 T 22-04-2016 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 ProSitePatterns PS00163 Fumarate lyases signature. 264 273 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 PANTHER PTHR11444 3 434 1.1E-147 T 22-04-2016 IPR000362 Fumarate lyase family RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 Gene3D G3DSA:1.10.275.10 2 93 1.1E-31 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 PRINTS PR00145 Argininosuccinate lyase family signature 264 280 1.5E-7 T 22-04-2016 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 PRINTS PR00145 Argininosuccinate lyase family signature 219 243 1.5E-7 T 22-04-2016 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 PRINTS PR00145 Argininosuccinate lyase family signature 90 112 1.5E-7 T 22-04-2016 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 PRINTS PR00145 Argininosuccinate lyase family signature 131 151 1.5E-7 T 22-04-2016 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 SMART SM00998 352 432 6.4E-43 T 22-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 SUPERFAMILY SSF48557 3 432 3.14E-134 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 Pfam PF10397 Adenylosuccinate lyase C-terminus 353 431 2.6E-27 T 22-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 PRINTS PR00149 Fumarate lyase superfamily signature 219 246 1.1E-25 T 22-04-2016 IPR000362 Fumarate lyase family RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 PRINTS PR00149 Fumarate lyase superfamily signature 264 280 1.1E-25 T 22-04-2016 IPR000362 Fumarate lyase family RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 PRINTS PR00149 Fumarate lyase superfamily signature 136 154 1.1E-25 T 22-04-2016 IPR000362 Fumarate lyase family RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 PRINTS PR00149 Fumarate lyase superfamily signature 91 109 1.1E-25 T 22-04-2016 IPR000362 Fumarate lyase family RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 Pfam PF00206 Lyase 7 287 4.0E-54 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 Gene3D G3DSA:1.20.200.10 94 359 1.6E-85 T 22-04-2016 RM11_RS03735 44b5e3f47862370f6e06aefc6e01d6cd 434 PANTHER PTHR11444:SF2 3 434 1.1E-147 T 22-04-2016 RM11_RS04220 8593cf47bde208a7a6d43040a83590cf 298 PANTHER PTHR34001 1 145 9.8E-20 T 22-04-2016 RM11_RS04220 8593cf47bde208a7a6d43040a83590cf 298 PANTHER PTHR34001 181 298 9.8E-20 T 22-04-2016 RM11_RS04220 8593cf47bde208a7a6d43040a83590cf 298 SUPERFAMILY SSF56925 190 298 7.06E-25 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS04220 8593cf47bde208a7a6d43040a83590cf 298 SUPERFAMILY SSF56925 43 64 7.06E-25 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS04220 8593cf47bde208a7a6d43040a83590cf 298 SUPERFAMILY SSF56925 98 134 7.06E-25 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS04220 8593cf47bde208a7a6d43040a83590cf 298 Gene3D G3DSA:2.40.160.20 43 63 9.9E-48 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS04220 8593cf47bde208a7a6d43040a83590cf 298 Gene3D G3DSA:2.40.160.20 97 142 9.9E-48 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS04220 8593cf47bde208a7a6d43040a83590cf 298 Gene3D G3DSA:2.40.160.20 191 298 9.9E-48 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS04220 8593cf47bde208a7a6d43040a83590cf 298 Pfam PF13505 Outer membrane protein beta-barrel domain 43 298 4.7E-13 T 22-04-2016 IPR027385 Outer membrane protein beta-barrel RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 SUPERFAMILY SSF52540 1 190 3.25E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 TIGRFAM TIGR01351 adk: adenylate kinase 2 187 1.4E-57 T 22-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 Hamap MF_00235 Adenylate kinase [adk]. 1 192 40.567 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 PANTHER PTHR23359 1 191 8.0E-66 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 Gene3D G3DSA:3.40.50.300 1 188 4.3E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 Pfam PF00406 Adenylate kinase 6 169 1.8E-51 T 22-04-2016 RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 PRINTS PR00094 Adenylate kinase signature 32 46 5.4E-30 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 PRINTS PR00094 Adenylate kinase signature 4 17 5.4E-30 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 PRINTS PR00094 Adenylate kinase signature 139 154 5.4E-30 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 PRINTS PR00094 Adenylate kinase signature 81 97 5.4E-30 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RM11_RS04020 1a87987959202f2f0334946c3cadae72 192 PRINTS PR00094 Adenylate kinase signature 156 170 5.4E-30 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 SMART SM01232 145 243 3.4E-38 T 22-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 Gene3D G3DSA:3.20.190.10 2 145 1.1E-36 T 22-04-2016 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 SMART SM00898 2 129 4.3E-48 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 128 6.0E-31 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 SUPERFAMILY SSF57716 239 291 1.8E-17 T 22-04-2016 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 Gene3D G3DSA:1.10.8.50 146 291 6.4E-44 T 22-04-2016 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 290 1.9E-81 T 22-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 Pfam PF06827 Zinc finger found in FPG and IleRS 263 291 7.1E-9 T 22-04-2016 IPR010663 Zinc finger, FPG/IleRS-type RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 291 42.265 T 22-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 145 240 2.3E-19 T 22-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 ProSitePatterns PS01242 Zinc finger FPG-type signature. 266 290 - T 22-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 PANTHER PTHR22993 1 291 5.3E-104 T 22-04-2016 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 PANTHER PTHR22993:SF15 1 291 5.3E-104 T 22-04-2016 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 SUPERFAMILY SSF46946 144 239 1.77E-25 T 22-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RM11_RS01170 a95ea3835b0278268a0718f9f0dbdcee 291 SUPERFAMILY SSF81624 2 154 5.89E-36 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 319 748 3.4E-171 T 22-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 Pfam PF14579 Helix-hairpin-helix motif 823 909 1.9E-23 T 22-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 SMART SM00481 19 86 2.2E-18 T 22-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 Gene3D G3DSA:3.20.20.140 18 277 8.8E-20 T 22-04-2016 RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 Pfam PF02811 PHP domain 20 196 5.0E-34 T 22-04-2016 IPR004013 PHP domain GO:0003824 RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 PANTHER PTHR32294:SF0 14 1162 0.0 T 22-04-2016 RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 PANTHER PTHR32294 14 1162 0.0 T 22-04-2016 RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 SUPERFAMILY SSF89550 18 284 3.92E-13 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 Gene3D G3DSA:2.40.50.140 1006 1082 9.4E-4 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 18 1043 0.0 T 22-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS03815 93fc5fd61843a5863c24f1815c3dbd55 1162 Gene3D G3DSA:1.10.150.280 848 883 1.6E-5 T 22-04-2016 RM11_RS04655 0d8d6431654154318e2f0ea9ed69d0c4 417 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 191 242 2.6E-11 T 22-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain RM11_RS04655 0d8d6431654154318e2f0ea9ed69d0c4 417 SUPERFAMILY SSF81891 152 414 9.94E-50 T 22-04-2016 RM11_RS04655 0d8d6431654154318e2f0ea9ed69d0c4 417 Gene3D G3DSA:3.30.460.10 15 154 1.8E-39 T 22-04-2016 RM11_RS04655 0d8d6431654154318e2f0ea9ed69d0c4 417 Gene3D G3DSA:1.10.3090.10 155 385 8.0E-46 T 22-04-2016 RM11_RS04655 0d8d6431654154318e2f0ea9ed69d0c4 417 PANTHER PTHR13734 18 246 3.2E-66 T 22-04-2016 RM11_RS04655 0d8d6431654154318e2f0ea9ed69d0c4 417 SUPERFAMILY SSF81301 6 151 5.23E-38 T 22-04-2016 RM11_RS04655 0d8d6431654154318e2f0ea9ed69d0c4 417 Pfam PF01743 Poly A polymerase head domain 32 154 6.4E-28 T 22-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 PANTHER PTHR11649 5 436 2.1E-140 T 22-04-2016 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 SUPERFAMILY SSF52540 68 149 7.43E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 SUPERFAMILY SSF52540 186 354 7.43E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 Gene3D G3DSA:3.30.1360.120 2 118 1.4E-38 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 Pfam PF01926 50S ribosome-binding GTPase 216 311 2.1E-19 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 215 329 8.9E-17 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 Gene3D G3DSA:1.20.120.430 248 269 3.8E-49 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 Gene3D G3DSA:1.20.120.430 119 179 3.8E-49 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 Gene3D G3DSA:1.20.120.430 368 436 3.8E-49 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 2 436 28.689 T 22-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 PANTHER PTHR11649:SF56 5 436 2.1E-140 T 22-04-2016 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 Pfam PF12631 MnmE helical domain 120 433 6.4E-46 T 22-04-2016 IPR025867 MnmE, helical domain RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 SUPERFAMILY SSF116878 363 436 4.05E-44 T 22-04-2016 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 SUPERFAMILY SSF116878 118 218 4.05E-44 T 22-04-2016 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 Pfam PF10396 GTP-binding protein TrmE N-terminus 3 117 1.2E-34 T 22-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 13 436 1.3E-84 T 22-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RM11_RS06770 efe8ade50a309c91902cdc8615527737 436 Gene3D G3DSA:3.40.50.300 210 247 1.3E-7 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 78 98 1.84E-26 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 128 146 1.84E-26 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 102 124 1.84E-26 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 17 34 1.84E-26 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 12 147 2.9E-42 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 SUPERFAMILY SSF54611 5 146 4.58E-50 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 Pfam PF02556 Preprotein translocase subunit SecB 12 148 8.2E-53 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 PANTHER PTHR36918:SF1 1 157 2.3E-46 T 22-04-2016 RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 Hamap MF_00821 Protein-export protein SecB [secB]. 1 150 31.86 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 PANTHER PTHR36918 1 157 2.3E-46 T 22-04-2016 RM11_RS00470 48f8072983182d63a298e79c9921bd82 158 Gene3D G3DSA:3.10.420.10 9 156 5.1E-57 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RM11_RS06405 d22267f7a2634b200724bb97482f3249 261 Pfam PF02104 SURF1 family 30 247 2.2E-41 T 22-04-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 RM11_RS06405 d22267f7a2634b200724bb97482f3249 261 PANTHER PTHR23427 158 246 2.5E-56 T 22-04-2016 RM11_RS06405 d22267f7a2634b200724bb97482f3249 261 PANTHER PTHR23427 36 133 2.5E-56 T 22-04-2016 RM11_RS06405 d22267f7a2634b200724bb97482f3249 261 PANTHER PTHR23427:SF6 158 246 2.5E-56 T 22-04-2016 RM11_RS06405 d22267f7a2634b200724bb97482f3249 261 PANTHER PTHR23427:SF6 36 133 2.5E-56 T 22-04-2016 RM11_RS06075 43239044990a1a18cf87cf766094c592 334 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 155 275 3.5E-12 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RM11_RS06075 43239044990a1a18cf87cf766094c592 334 SUPERFAMILY SSF111369 176 269 4.18E-12 T 22-04-2016 RM11_RS06075 43239044990a1a18cf87cf766094c592 334 SUPERFAMILY SSF111369 51 143 4.18E-12 T 22-04-2016 RM11_RS06075 43239044990a1a18cf87cf766094c592 334 PANTHER PTHR30386:SF0 2 329 1.8E-55 T 22-04-2016 RM11_RS06075 43239044990a1a18cf87cf766094c592 334 Gene3D G3DSA:2.40.50.100 52 82 2.5E-14 T 22-04-2016 RM11_RS06075 43239044990a1a18cf87cf766094c592 334 Gene3D G3DSA:2.40.50.100 197 229 2.5E-14 T 22-04-2016 RM11_RS06075 43239044990a1a18cf87cf766094c592 334 Pfam PF13533 Biotin-lipoyl like 49 94 3.7E-10 T 22-04-2016 RM11_RS06075 43239044990a1a18cf87cf766094c592 334 PANTHER PTHR30386 2 329 1.8E-55 T 22-04-2016 RM11_RS00795 08f39927b504790fda30af70cea93b71 336 SUPERFAMILY SSF52266 31 260 1.03E-19 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain RM11_RS00795 08f39927b504790fda30af70cea93b71 336 Gene3D G3DSA:3.40.50.1110 59 261 3.6E-13 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain RM11_RS00795 08f39927b504790fda30af70cea93b71 336 Pfam PF04311 Protein of unknown function (DUF459) 44 300 2.0E-57 T 22-04-2016 IPR007407 Protein of unknown function DUF459 RM11_RS00230 dc85ce3a57f62588b71b45c2a8f1bd51 265 Gene3D G3DSA:3.40.50.1820 186 242 1.4E-27 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS00230 dc85ce3a57f62588b71b45c2a8f1bd51 265 Gene3D G3DSA:3.40.50.1820 28 138 1.4E-27 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS00230 dc85ce3a57f62588b71b45c2a8f1bd51 265 Pfam PF12146 Serine aminopeptidase, S33 53 140 4.1E-11 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 RM11_RS00230 dc85ce3a57f62588b71b45c2a8f1bd51 265 SUPERFAMILY SSF53474 9 245 2.39E-30 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RM11_RS00230 dc85ce3a57f62588b71b45c2a8f1bd51 265 PANTHER PTHR16138 16 261 5.3E-73 T 22-04-2016 RM11_RS00115 d8f1b5a8f8548e1f90ebde3266335a01 553 SUPERFAMILY SSF52374 24 344 8.79E-51 T 22-04-2016 RM11_RS00115 d8f1b5a8f8548e1f90ebde3266335a01 553 Gene3D G3DSA:3.40.50.620 24 207 1.2E-38 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS00115 d8f1b5a8f8548e1f90ebde3266335a01 553 Gene3D G3DSA:3.40.50.620 245 294 1.2E-38 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS00115 d8f1b5a8f8548e1f90ebde3266335a01 553 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 54 63 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS00115 d8f1b5a8f8548e1f90ebde3266335a01 553 SUPERFAMILY SSF48163 343 547 2.88E-39 T 22-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RM11_RS00115 d8f1b5a8f8548e1f90ebde3266335a01 553 Gene3D G3DSA:1.10.10.350 441 547 1.8E-25 T 22-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RM11_RS00115 d8f1b5a8f8548e1f90ebde3266335a01 553 Hamap MF_00177 Lysine--tRNA ligase [lysS]. 23 547 28.323 T 22-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RM11_RS00115 d8f1b5a8f8548e1f90ebde3266335a01 553 TIGRFAM TIGR00467 lysS_arch: lysine--tRNA ligase 44 544 6.2E-48 T 22-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RM11_RS00115 d8f1b5a8f8548e1f90ebde3266335a01 553 Pfam PF01921 tRNA synthetases class I (K) 23 378 1.5E-125 T 22-04-2016 RM11_RS00115 d8f1b5a8f8548e1f90ebde3266335a01 553 PANTHER PTHR37940 14 551 5.4E-145 T 22-04-2016 RM11_RS04120 b6e2d44a0990b08c196e2b6cae6b077a 206 SUPERFAMILY SSF52166 1 205 1.57E-68 T 22-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RM11_RS04120 b6e2d44a0990b08c196e2b6cae6b077a 206 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 29.852 T 22-04-2016 IPR013005 50S ribosomal protein uL4 RM11_RS04120 b6e2d44a0990b08c196e2b6cae6b077a 206 PANTHER PTHR10746 1 204 4.9E-81 T 22-04-2016 IPR013005 50S ribosomal protein uL4 RM11_RS04120 b6e2d44a0990b08c196e2b6cae6b077a 206 Pfam PF00573 Ribosomal protein L4/L1 family 17 204 1.7E-60 T 22-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 RM11_RS04120 b6e2d44a0990b08c196e2b6cae6b077a 206 Gene3D G3DSA:3.40.1370.10 58 205 2.4E-54 T 22-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RM11_RS04120 b6e2d44a0990b08c196e2b6cae6b077a 206 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 203 1.0E-66 T 22-04-2016 IPR013005 50S ribosomal protein uL4 RM11_RS01145 ef2d9f9082c7a517a83f302910bb664c 430 Pfam PF11812 Domain of unknown function (DUF3333) 13 163 1.3E-51 T 22-04-2016 IPR024573 Domain of unknown function DUF3333 RM11_RS01145 ef2d9f9082c7a517a83f302910bb664c 430 PANTHER PTHR30425:SF2 14 54 4.8E-90 T 22-04-2016 RM11_RS01145 ef2d9f9082c7a517a83f302910bb664c 430 PANTHER PTHR30425:SF2 164 429 4.8E-90 T 22-04-2016 RM11_RS01145 ef2d9f9082c7a517a83f302910bb664c 430 PANTHER PTHR30425 14 54 4.8E-90 T 22-04-2016 RM11_RS01145 ef2d9f9082c7a517a83f302910bb664c 430 PANTHER PTHR30425 164 429 4.8E-90 T 22-04-2016 RM11_RS01145 ef2d9f9082c7a517a83f302910bb664c 430 SUPERFAMILY SSF161098 195 416 1.07E-32 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS01145 ef2d9f9082c7a517a83f302910bb664c 430 Gene3D G3DSA:1.10.3720.10 28 52 9.7E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS01145 ef2d9f9082c7a517a83f302910bb664c 430 Gene3D G3DSA:1.10.3720.10 191 429 9.7E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS01145 ef2d9f9082c7a517a83f302910bb664c 430 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 188 427 1.5E-67 T 22-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 RM11_RS01145 ef2d9f9082c7a517a83f302910bb664c 430 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 227 429 5.2E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS01580 bd7737ba9e116b75b55e7d35553c1d4d 164 Pfam PF00430 ATP synthase B/B' CF(0) 6 134 1.1E-20 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RM11_RS01580 bd7737ba9e116b75b55e7d35553c1d4d 164 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 159 11.694 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RM11_RS00025 5bb0d953b0648f2ad53502163cbea039 235 PANTHER PTHR30231 1 186 3.8E-79 T 22-04-2016 RM11_RS00025 5bb0d953b0648f2ad53502163cbea039 235 PANTHER PTHR30231:SF0 1 186 3.8E-79 T 22-04-2016 RM11_RS00025 5bb0d953b0648f2ad53502163cbea039 235 Gene3D G3DSA:3.30.420.10 1 171 1.3E-62 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS00025 5bb0d953b0648f2ad53502163cbea039 235 SMART SM00479 2 172 8.4E-49 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RM11_RS00025 5bb0d953b0648f2ad53502163cbea039 235 Pfam PF00929 Exonuclease 4 163 1.1E-37 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RM11_RS00025 5bb0d953b0648f2ad53502163cbea039 235 SUPERFAMILY SSF53098 1 169 1.23E-54 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS00025 5bb0d953b0648f2ad53502163cbea039 235 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 191 1.1E-56 T 22-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS00025 5bb0d953b0648f2ad53502163cbea039 235 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 229 2.4E-78 T 22-04-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RM11_RS01045 432361352f6b0b2678c36c4e6a8e9e2c 158 Gene3D G3DSA:3.40.390.30 14 155 3.1E-45 T 22-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 RM11_RS01045 432361352f6b0b2678c36c4e6a8e9e2c 158 PANTHER PTHR22881 38 155 2.7E-45 T 22-04-2016 RM11_RS01045 432361352f6b0b2678c36c4e6a8e9e2c 158 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 118 128 - T 22-04-2016 IPR020549 Endoribonuclease YbeY, conserved site RM11_RS01045 432361352f6b0b2678c36c4e6a8e9e2c 158 Pfam PF02130 Uncharacterized protein family UPF0054 21 147 2.4E-37 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RM11_RS01045 432361352f6b0b2678c36c4e6a8e9e2c 158 SUPERFAMILY SSF55486 6 154 2.2E-43 T 22-04-2016 RM11_RS01045 432361352f6b0b2678c36c4e6a8e9e2c 158 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 3 152 23.413 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RM11_RS01045 432361352f6b0b2678c36c4e6a8e9e2c 158 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 42 148 6.1E-36 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RM11_RS03845 2da410af577b895beeeea661835469de 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 22-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RM11_RS03845 2da410af577b895beeeea661835469de 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 102 9.5E-21 T 22-04-2016 IPR000361 FeS cluster biogenesis RM11_RS03845 2da410af577b895beeeea661835469de 107 SUPERFAMILY SSF89360 1 96 6.15E-31 T 22-04-2016 IPR000361 FeS cluster biogenesis RM11_RS03845 2da410af577b895beeeea661835469de 107 Gene3D G3DSA:2.60.300.12 2 95 1.5E-31 T 22-04-2016 IPR000361 FeS cluster biogenesis RM11_RS03845 2da410af577b895beeeea661835469de 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 106 7.6E-36 T 22-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RM11_RS03845 2da410af577b895beeeea661835469de 107 PANTHER PTHR10072 3 107 6.1E-44 T 22-04-2016 RM11_RS04780 f0d48450ba26fe4abf0f3458511b56a1 476 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 14 452 26.129 T 22-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RM11_RS04780 f0d48450ba26fe4abf0f3458511b56a1 476 Pfam PF02601 Exonuclease VII, large subunit 134 449 8.8E-86 T 22-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RM11_RS04780 f0d48450ba26fe4abf0f3458511b56a1 476 PANTHER PTHR30008 9 464 5.4E-136 T 22-04-2016 RM11_RS04780 f0d48450ba26fe4abf0f3458511b56a1 476 PANTHER PTHR30008:SF0 9 464 5.4E-136 T 22-04-2016 RM11_RS04780 f0d48450ba26fe4abf0f3458511b56a1 476 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 18 450 4.7E-124 T 22-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RM11_RS04780 f0d48450ba26fe4abf0f3458511b56a1 476 Pfam PF13742 OB-fold nucleic acid binding domain 17 110 1.5E-26 T 22-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 RM11_RS06050 ae70bf576fb7196a4fc9a0855dc37b2f 194 SUPERFAMILY SSF141259 7 73 2.62E-12 T 22-04-2016 IPR003711 CarD-like/TRCF domain RM11_RS06050 ae70bf576fb7196a4fc9a0855dc37b2f 194 SMART SM01058 13 123 2.0E-30 T 22-04-2016 IPR003711 CarD-like/TRCF domain RM11_RS06050 ae70bf576fb7196a4fc9a0855dc37b2f 194 Pfam PF02559 CarD-like/TRCF domain 16 121 2.0E-11 T 22-04-2016 IPR003711 CarD-like/TRCF domain RM11_RS06050 ae70bf576fb7196a4fc9a0855dc37b2f 194 PANTHER PTHR38447 14 187 2.8E-45 T 22-04-2016 RM11_RS06610 b77bd3886312903bfa546cbc6ae228df 315 Gene3D G3DSA:1.10.150.130 5 98 2.4E-21 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal RM11_RS06610 b77bd3886312903bfa546cbc6ae228df 315 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 306 26.74 T 22-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RM11_RS06610 b77bd3886312903bfa546cbc6ae228df 315 Gene3D G3DSA:1.10.443.10 111 294 2.8E-49 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RM11_RS06610 b77bd3886312903bfa546cbc6ae228df 315 PANTHER PTHR30349:SF5 6 313 2.9E-79 T 22-04-2016 RM11_RS06610 b77bd3886312903bfa546cbc6ae228df 315 SUPERFAMILY SSF56349 107 303 1.24E-47 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RM11_RS06610 b77bd3886312903bfa546cbc6ae228df 315 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 7 89 2.1E-13 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RM11_RS06610 b77bd3886312903bfa546cbc6ae228df 315 Pfam PF00589 Phage integrase family 139 291 1.2E-41 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RM11_RS06610 b77bd3886312903bfa546cbc6ae228df 315 PANTHER PTHR30349 6 313 2.9E-79 T 22-04-2016 RM11_RS06610 b77bd3886312903bfa546cbc6ae228df 315 SUPERFAMILY SSF47823 3 97 1.12E-25 T 22-04-2016 IPR010998 Integrase, Lambda-type, N-terminal RM11_RS03475 c3161d422567ce848aad96c89c533b70 155 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 13 151 5.6E-59 T 22-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RM11_RS03475 c3161d422567ce848aad96c89c533b70 155 SUPERFAMILY SSF54637 13 151 8.26E-47 T 22-04-2016 IPR029069 HotDog domain RM11_RS03475 c3161d422567ce848aad96c89c533b70 155 Pfam PF07977 FabA-like domain 22 146 3.4E-36 T 22-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RM11_RS03475 c3161d422567ce848aad96c89c533b70 155 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 13 153 33.965 T 22-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RM11_RS03475 c3161d422567ce848aad96c89c533b70 155 Gene3D G3DSA:3.10.129.10 12 153 4.9E-55 T 22-04-2016 IPR029069 HotDog domain RM11_RS03475 c3161d422567ce848aad96c89c533b70 155 PANTHER PTHR30272 14 155 1.0E-62 T 22-04-2016 RM11_RS02250 ece736db7265d1c3867aef23c36eb857 627 PANTHER PTHR24221 19 610 0.0 T 22-04-2016 RM11_RS02250 ece736db7265d1c3867aef23c36eb857 627 SUPERFAMILY SSF90123 24 345 1.57E-54 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RM11_RS02250 ece736db7265d1c3867aef23c36eb857 627 SUPERFAMILY SSF52540 357 601 3.26E-92 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02250 ece736db7265d1c3867aef23c36eb857 627 SMART SM00382 391 577 7.5E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS02250 ece736db7265d1c3867aef23c36eb857 627 Pfam PF00005 ABC transporter 382 531 2.5E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS02250 ece736db7265d1c3867aef23c36eb857 627 Gene3D G3DSA:1.20.1560.10 24 347 1.1E-57 T 22-04-2016 RM11_RS02250 ece736db7265d1c3867aef23c36eb857 627 Pfam PF00664 ABC transporter transmembrane region 43 319 4.8E-31 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RM11_RS02250 ece736db7265d1c3867aef23c36eb857 627 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS02250 ece736db7265d1c3867aef23c36eb857 627 Gene3D G3DSA:3.40.50.300 365 596 9.4E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02250 ece736db7265d1c3867aef23c36eb857 627 PANTHER PTHR24221:SF250 19 610 0.0 T 22-04-2016 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SUPERFAMILY SSF48452 39 129 9.32E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SUPERFAMILY SSF48452 304 408 4.09E-16 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SUPERFAMILY SSF48452 38 71 1.07E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SUPERFAMILY SSF48452 128 206 1.07E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 Gene3D G3DSA:1.25.40.10 33 101 5.3E-8 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 Gene3D G3DSA:1.25.40.10 141 206 5.3E-8 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 Pfam PF13181 Tetratricopeptide repeat 41 70 0.034 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 PANTHER PTHR23083:SF412 41 203 1.5E-45 T 22-04-2016 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 PANTHER PTHR23083:SF412 306 560 1.5E-45 T 22-04-2016 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SMART SM00028 518 551 210.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SMART SM00028 484 517 0.0012 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SMART SM00028 449 483 98.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SMART SM00028 415 448 9.0E-4 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SMART SM00028 377 410 19.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SMART SM00028 173 206 86.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SMART SM00028 37 70 0.71 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 PANTHER PTHR23083 41 203 1.5E-45 T 22-04-2016 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 PANTHER PTHR23083 306 560 1.5E-45 T 22-04-2016 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 Gene3D G3DSA:1.25.40.10 301 551 8.7E-50 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 SUPERFAMILY SSF48452 383 543 4.74E-28 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 Pfam PF14559 Tetratricopeptide repeat 357 406 1.6E-5 T 22-04-2016 RM11_RS01595 67582894c68943a73e0efb7c6157a263 564 Pfam PF13432 Tetratricopeptide repeat 490 542 7.1E-8 T 22-04-2016 RM11_RS00880 8fc7cb98f24962ec9f200226ee6549a2 250 Gene3D G3DSA:3.40.50.300 3 227 4.0E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00880 8fc7cb98f24962ec9f200226ee6549a2 250 Pfam PF00005 ABC transporter 19 157 2.6E-25 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS00880 8fc7cb98f24962ec9f200226ee6549a2 250 SMART SM00382 27 205 2.6E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS00880 8fc7cb98f24962ec9f200226ee6549a2 250 SUPERFAMILY SSF52540 3 222 4.3E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00880 8fc7cb98f24962ec9f200226ee6549a2 250 PANTHER PTHR24220 4 218 1.5E-48 T 22-04-2016 RM11_RS00880 8fc7cb98f24962ec9f200226ee6549a2 250 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS00880 8fc7cb98f24962ec9f200226ee6549a2 250 PANTHER PTHR24220:SF581 4 218 1.5E-48 T 22-04-2016 RM11_RS05620 273e4f39b02d24ecfedd0859a8501f58 265 SUPERFAMILY SSF48452 141 260 7.83E-19 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS05620 273e4f39b02d24ecfedd0859a8501f58 265 Gene3D G3DSA:1.25.40.10 147 260 3.8E-16 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS05620 273e4f39b02d24ecfedd0859a8501f58 265 SMART SM00028 213 246 11.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RM11_RS05620 273e4f39b02d24ecfedd0859a8501f58 265 SMART SM00028 179 212 0.38 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 Gene3D G3DSA:2.40.50.140 130 186 7.5E-21 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 PANTHER PTHR30053 1 187 6.0E-84 T 22-04-2016 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 SUPERFAMILY SSF50249 66 128 4.11E-17 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 ProSitePatterns PS01275 Elongation factor P signature. 151 170 - T 22-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 TIGRFAM TIGR00038 efp: translation elongation factor P 3 186 9.0E-70 T 22-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 69 122 2.3E-20 T 22-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 SMART SM00841 130 185 1.1E-24 T 22-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 61 1.6E-21 T 22-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 SUPERFAMILY SSF50249 130 186 6.51E-15 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 Gene3D G3DSA:2.30.30.30 3 64 4.8E-24 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 SMART SM01185 68 122 8.1E-23 T 22-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 PIRSF PIRSF005901 1 187 3.2E-73 T 22-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 SUPERFAMILY SSF50104 3 64 2.29E-17 T 22-04-2016 IPR008991 Translation protein SH3-like domain RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 Hamap MF_00141 Elongation factor P [efp]. 2 186 44.91 T 22-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 PANTHER PTHR30053:SF1 1 187 6.0E-84 T 22-04-2016 RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 Gene3D G3DSA:2.40.50.140 66 127 7.4E-24 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS05945 6f834495156b4b42b2a4391e2d2154cd 190 Pfam PF09285 Elongation factor P, C-terminal 130 185 4.4E-20 T 22-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RM11_RS03065 e7bea43a0e9ad869505b0e28d1f5fff7 270 SMART SM00849 38 238 3.0E-8 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS03065 e7bea43a0e9ad869505b0e28d1f5fff7 270 PANTHER PTHR12553 4 268 1.5E-56 T 22-04-2016 RM11_RS03065 e7bea43a0e9ad869505b0e28d1f5fff7 270 PANTHER PTHR12553:SF7 4 268 1.5E-56 T 22-04-2016 RM11_RS03065 e7bea43a0e9ad869505b0e28d1f5fff7 270 Gene3D G3DSA:3.60.15.10 6 266 3.9E-62 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS03065 e7bea43a0e9ad869505b0e28d1f5fff7 270 SUPERFAMILY SSF56281 6 266 1.85E-42 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS03065 e7bea43a0e9ad869505b0e28d1f5fff7 270 Pfam PF12706 Beta-lactamase superfamily domain 54 239 6.6E-36 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS02105 6b8ace35723fdefbad29caf30bcc8e59 316 SUPERFAMILY SSF51971 3 199 5.77E-23 T 22-04-2016 RM11_RS02105 6b8ace35723fdefbad29caf30bcc8e59 316 SUPERFAMILY SSF51971 262 315 5.77E-23 T 22-04-2016 RM11_RS02105 6b8ace35723fdefbad29caf30bcc8e59 316 Gene3D G3DSA:3.50.50.60 4 147 1.8E-8 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS02105 6b8ace35723fdefbad29caf30bcc8e59 316 Gene3D G3DSA:3.30.9.10 148 275 3.5E-27 T 22-04-2016 RM11_RS02105 6b8ace35723fdefbad29caf30bcc8e59 316 Pfam PF01266 FAD dependent oxidoreductase 4 310 1.2E-37 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RM11_RS02105 6b8ace35723fdefbad29caf30bcc8e59 316 SUPERFAMILY SSF54373 186 275 1.96E-22 T 22-04-2016 RM11_RS02105 6b8ace35723fdefbad29caf30bcc8e59 316 PANTHER PTHR13847:SF180 3 313 2.5E-24 T 22-04-2016 RM11_RS02105 6b8ace35723fdefbad29caf30bcc8e59 316 PANTHER PTHR13847 3 313 2.5E-24 T 22-04-2016 RM11_RS00190 f39a6923b667d5aefcc956a323b42052 260 Gene3D G3DSA:3.40.50.150 31 258 7.1E-58 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS00190 f39a6923b667d5aefcc956a323b42052 260 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 167 181 - T 22-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RM11_RS00190 f39a6923b667d5aefcc956a323b42052 260 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 32 259 7.0E-84 T 22-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RM11_RS00190 f39a6923b667d5aefcc956a323b42052 260 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 23 259 38.531 T 22-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RM11_RS00190 f39a6923b667d5aefcc956a323b42052 260 PANTHER PTHR10108:SF24 15 260 6.2E-119 T 22-04-2016 RM11_RS00190 f39a6923b667d5aefcc956a323b42052 260 PANTHER PTHR10108 15 260 6.2E-119 T 22-04-2016 RM11_RS00190 f39a6923b667d5aefcc956a323b42052 260 Pfam PF01209 ubiE/COQ5 methyltransferase family 28 259 1.9E-90 T 22-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RM11_RS00190 f39a6923b667d5aefcc956a323b42052 260 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 43 58 - T 22-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RM11_RS00190 f39a6923b667d5aefcc956a323b42052 260 SUPERFAMILY SSF53335 23 252 1.32E-45 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS04275 5200297af7ce2f93381077c9e0ce5e99 339 Gene3D G3DSA:1.10.1040.10 29 326 1.9E-110 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RM11_RS04275 5200297af7ce2f93381077c9e0ce5e99 339 SUPERFAMILY SSF48179 184 333 4.42E-71 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RM11_RS04275 5200297af7ce2f93381077c9e0ce5e99 339 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 184 327 2.0E-65 T 22-04-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS04275 5200297af7ce2f93381077c9e0ce5e99 339 PANTHER PTHR21371 3 338 5.6E-179 T 22-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS04275 5200297af7ce2f93381077c9e0ce5e99 339 SUPERFAMILY SSF51735 1 183 1.79E-72 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04275 5200297af7ce2f93381077c9e0ce5e99 339 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 1 329 44.907 T 22-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS04275 5200297af7ce2f93381077c9e0ce5e99 339 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 328 6.2E-131 T 22-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS04275 5200297af7ce2f93381077c9e0ce5e99 339 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 178 1.1E-73 T 22-04-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS06400 ab4f9121d5d940cc2047c253fd34010c 97 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 4.1E-25 T 22-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06400 ab4f9121d5d940cc2047c253fd34010c 97 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 68 19.928 T 22-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06400 ab4f9121d5d940cc2047c253fd34010c 97 Gene3D G3DSA:2.30.170.40 2 77 1.6E-30 T 22-04-2016 RM11_RS06400 ab4f9121d5d940cc2047c253fd34010c 97 Pfam PF00830 Ribosomal L28 family 3 61 4.3E-24 T 22-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RM11_RS06400 ab4f9121d5d940cc2047c253fd34010c 97 PANTHER PTHR13528 1 91 9.8E-29 T 22-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RM11_RS06400 ab4f9121d5d940cc2047c253fd34010c 97 SUPERFAMILY SSF143800 1 85 4.51E-28 T 22-04-2016 RM11_RS03540 b8d3b9150ecfcf3b69029fba8141dea7 128 Gene3D G3DSA:3.30.1390.10 24 126 1.7E-35 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RM11_RS03540 b8d3b9150ecfcf3b69029fba8141dea7 128 SUPERFAMILY SSF54736 39 126 1.26E-26 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RM11_RS03540 b8d3b9150ecfcf3b69029fba8141dea7 128 PANTHER PTHR33473 6 126 2.6E-27 T 22-04-2016 RM11_RS03540 b8d3b9150ecfcf3b69029fba8141dea7 128 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 36 123 23.497 T 22-04-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS RM11_RS03540 b8d3b9150ecfcf3b69029fba8141dea7 128 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 42 123 3.9E-27 T 22-04-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 RM11_RS00345 21ca05ba9ba98f6ba2d9999ad7aa0bb9 309 Gene3D G3DSA:3.10.25.10 209 306 1.6E-24 T 22-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS00345 21ca05ba9ba98f6ba2d9999ad7aa0bb9 309 PANTHER PTHR11138 3 305 3.7E-104 T 22-04-2016 RM11_RS00345 21ca05ba9ba98f6ba2d9999ad7aa0bb9 309 SUPERFAMILY SSF50486 207 305 4.55E-25 T 22-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 RM11_RS00345 21ca05ba9ba98f6ba2d9999ad7aa0bb9 309 Gene3D G3DSA:3.40.50.170 3 207 2.3E-71 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS00345 21ca05ba9ba98f6ba2d9999ad7aa0bb9 309 Pfam PF02911 Formyl transferase, C-terminal domain 206 303 1.5E-23 T 22-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS00345 21ca05ba9ba98f6ba2d9999ad7aa0bb9 309 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 3 306 35.478 T 22-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS00345 21ca05ba9ba98f6ba2d9999ad7aa0bb9 309 Pfam PF00551 Formyl transferase 8 182 2.7E-42 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS00345 21ca05ba9ba98f6ba2d9999ad7aa0bb9 309 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 135 158 - T 22-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS00345 21ca05ba9ba98f6ba2d9999ad7aa0bb9 309 SUPERFAMILY SSF53328 3 209 2.62E-64 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS00345 21ca05ba9ba98f6ba2d9999ad7aa0bb9 309 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 4 304 8.2E-83 T 22-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS02125 4bc2a5b6f9397905de4b8b846210f226 300 Pfam PF01497 Periplasmic binding protein 42 270 8.0E-31 T 22-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RM11_RS02125 4bc2a5b6f9397905de4b8b846210f226 300 Gene3D G3DSA:3.40.50.1980 41 158 6.7E-24 T 22-04-2016 RM11_RS02125 4bc2a5b6f9397905de4b8b846210f226 300 PANTHER PTHR30535:SF4 40 294 1.0E-72 T 22-04-2016 RM11_RS02125 4bc2a5b6f9397905de4b8b846210f226 300 SUPERFAMILY SSF53807 41 293 5.49E-52 T 22-04-2016 RM11_RS02125 4bc2a5b6f9397905de4b8b846210f226 300 Gene3D G3DSA:3.40.50.1980 173 292 6.8E-18 T 22-04-2016 RM11_RS02125 4bc2a5b6f9397905de4b8b846210f226 300 PANTHER PTHR30535 40 294 1.0E-72 T 22-04-2016 RM11_RS01535 28eb780644315335369f04ee88f7fbd5 458 Gene3D G3DSA:1.20.1530.10 305 438 1.5E-133 T 22-04-2016 IPR023171 Na/H antiporter domain RM11_RS01535 28eb780644315335369f04ee88f7fbd5 458 Gene3D G3DSA:1.20.1530.10 24 263 1.5E-133 T 22-04-2016 IPR023171 Na/H antiporter domain RM11_RS01535 28eb780644315335369f04ee88f7fbd5 458 PANTHER PTHR30341 19 262 2.0E-141 T 22-04-2016 RM11_RS01535 28eb780644315335369f04ee88f7fbd5 458 PANTHER PTHR30341 294 452 2.0E-141 T 22-04-2016 RM11_RS01535 28eb780644315335369f04ee88f7fbd5 458 Pfam PF06965 Na+/H+ antiporter 1 27 435 5.3E-131 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RM11_RS01535 28eb780644315335369f04ee88f7fbd5 458 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 24 444 21.411 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RM11_RS01535 28eb780644315335369f04ee88f7fbd5 458 PANTHER PTHR30341:SF0 19 262 2.0E-141 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RM11_RS01535 28eb780644315335369f04ee88f7fbd5 458 PANTHER PTHR30341:SF0 294 452 2.0E-141 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RM11_RS01535 28eb780644315335369f04ee88f7fbd5 458 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 27 436 7.9E-111 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RM11_RS05570 a560e7e407c8539268296d6467e29bd3 193 Pfam PF02600 Disulfide bond formation protein DsbB 16 98 3.1E-11 T 22-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 RM11_RS05570 a560e7e407c8539268296d6467e29bd3 193 SUPERFAMILY SSF158442 17 128 1.15E-18 T 22-04-2016 RM11_RS05570 a560e7e407c8539268296d6467e29bd3 193 Gene3D G3DSA:1.20.1550.10 18 97 2.4E-9 T 22-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 SUPERFAMILY SSF53697 30 331 1.56E-57 T 22-04-2016 RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 56 321 3.2E-84 T 22-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 Gene3D G3DSA:3.40.50.10490 24 202 1.4E-40 T 22-04-2016 RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 PIRSF PIRSF004692 2 331 2.9E-119 T 22-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 PANTHER PTHR38418 43 210 1.5E-35 T 22-04-2016 RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 Pfam PF01380 SIS domain 51 183 9.7E-27 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 Pfam PF00571 CBS domain 222 267 5.7E-6 T 22-04-2016 IPR000644 CBS domain RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 Pfam PF00571 CBS domain 276 327 6.4E-9 T 22-04-2016 IPR000644 CBS domain RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 Gene3D G3DSA:3.10.580.10 204 327 3.7E-32 T 22-04-2016 RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 PANTHER PTHR38418:SF1 43 210 1.5E-35 T 22-04-2016 RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 SMART SM00116 220 268 2.3E-6 T 22-04-2016 IPR000644 CBS domain RM11_RS00810 e9e281f38d5415c2bfda9aa9c790b113 331 SMART SM00116 283 330 1.4 T 22-04-2016 IPR000644 CBS domain RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 PRINTS PR00127 Clp protease catalytic subunit P signature 27 42 1.42E-49 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 PRINTS PR00127 Clp protease catalytic subunit P signature 119 138 1.42E-49 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 PRINTS PR00127 Clp protease catalytic subunit P signature 67 87 1.42E-49 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 PRINTS PR00127 Clp protease catalytic subunit P signature 98 115 1.42E-49 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 PRINTS PR00127 Clp protease catalytic subunit P signature 176 195 1.42E-49 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 120 133 - T 22-04-2016 IPR033135 ClpP, histidine active site RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 11 201 42.464 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 98 109 - T 22-04-2016 IPR018215 ClpP, Ser active site RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 Pfam PF00574 Clp protease 21 200 1.2E-86 T 22-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 PANTHER PTHR10381 1 208 2.2E-136 T 22-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 PANTHER PTHR10381:SF11 1 208 2.2E-136 T 22-04-2016 RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 SUPERFAMILY SSF52096 18 202 2.11E-73 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 Gene3D G3DSA:3.90.226.10 19 208 6.7E-87 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS02585 82c6bdee2119bbcaa82fbd877b8aaf4e 210 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 10 199 4.4E-95 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RM11_RS05125 f38811cbac5a3244cda838a64658b936 376 Gene3D G3DSA:3.60.21.10 76 347 1.2E-26 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like RM11_RS05125 f38811cbac5a3244cda838a64658b936 376 Pfam PF00149 Calcineurin-like phosphoesterase 56 304 5.6E-8 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RM11_RS05125 f38811cbac5a3244cda838a64658b936 376 SUPERFAMILY SSF56300 55 144 3.98E-33 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like RM11_RS05125 f38811cbac5a3244cda838a64658b936 376 SUPERFAMILY SSF56300 184 354 3.98E-33 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like RM11_RS02500 25bbbc0a736566d2333bc2627fa8f288 278 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 20 275 1.1E-124 T 22-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RM11_RS02500 25bbbc0a736566d2333bc2627fa8f288 278 SUPERFAMILY SSF51569 5 276 2.38E-105 T 22-04-2016 RM11_RS02500 25bbbc0a736566d2333bc2627fa8f288 278 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 15 277 52.593 T 22-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RM11_RS02500 25bbbc0a736566d2333bc2627fa8f288 278 PANTHER PTHR21057 7 276 6.5E-158 T 22-04-2016 RM11_RS02500 25bbbc0a736566d2333bc2627fa8f288 278 Gene3D G3DSA:3.20.20.70 20 276 1.3E-112 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS02500 25bbbc0a736566d2333bc2627fa8f288 278 Pfam PF00793 DAHP synthetase I family 12 271 8.0E-70 T 22-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RM11_RS02500 25bbbc0a736566d2333bc2627fa8f288 278 PANTHER PTHR21057:SF2 7 276 6.5E-158 T 22-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 PANTHER PTHR30128 54 168 6.8E-49 T 22-04-2016 RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 PANTHER PTHR30128:SF18 54 168 6.8E-49 T 22-04-2016 RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 PRINTS PR01021 OMPA domain signature 111 127 2.1E-16 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 PRINTS PR01021 OMPA domain signature 66 88 2.1E-16 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 PRINTS PR01021 OMPA domain signature 96 111 2.1E-16 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 Pfam PF00691 OmpA family 65 160 1.0E-21 T 22-04-2016 IPR006665 OmpA-like domain RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 129 148 1.4E-5 T 22-04-2016 RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 111 128 1.4E-5 T 22-04-2016 RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 Gene3D G3DSA:3.30.1330.60 54 166 1.2E-34 T 22-04-2016 IPR006665 OmpA-like domain RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 ProSitePatterns PS01068 OmpA-like domain. 98 142 - T 22-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 SUPERFAMILY SSF103088 54 166 2.35E-35 T 22-04-2016 IPR006665 OmpA-like domain RM11_RS05855 d3a86f2e34f600ce29925e9898922ce5 172 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 63 165 5.0E-43 T 22-04-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 RM11_RS04510 ff6d0f60dc437f36d3fe17576a9d140f 179 SUPERFAMILY SSF47413 10 76 6.19E-11 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RM11_RS04510 ff6d0f60dc437f36d3fe17576a9d140f 179 Pfam PF01381 Helix-turn-helix 27 71 7.2E-7 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RM11_RS04510 ff6d0f60dc437f36d3fe17576a9d140f 179 SMART SM00530 15 71 6.3E-7 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RM11_RS04510 ff6d0f60dc437f36d3fe17576a9d140f 179 Gene3D G3DSA:1.10.260.40 12 78 1.1E-12 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 PANTHER PTHR23135 2 454 4.1E-194 T 22-04-2016 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 Pfam PF08245 Mur ligase middle domain 112 298 1.4E-29 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 7 465 41.488 T 22-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 Gene3D G3DSA:3.90.190.20 320 463 1.4E-47 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 SUPERFAMILY SSF51984 10 94 5.1E-27 T 22-04-2016 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 Gene3D G3DSA:3.40.50.720 10 95 2.6E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 Pfam PF02875 Mur ligase family, glutamate ligase domain 318 403 1.4E-17 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 SUPERFAMILY SSF53244 317 461 6.04E-43 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 SUPERFAMILY SSF53623 93 316 1.26E-69 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 PANTHER PTHR23135:SF5 2 454 4.1E-194 T 22-04-2016 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 Gene3D G3DSA:3.40.1190.10 96 319 3.0E-84 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 Pfam PF01225 Mur ligase family, catalytic domain 10 107 1.9E-26 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS04420 fc8006d7b567abda407f31fb71b4dd4d 475 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 10 458 4.6E-159 T 22-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Hamap MF_00204 UvrABC system protein B [uvrB]. 44 701 41.229 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Pfam PF12344 Ultra-violet resistance protein B 593 634 3.7E-21 T 22-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Gene3D G3DSA:4.10.860.10 662 703 4.8E-17 T 22-04-2016 IPR001943 UVR domain GO:0005515 RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 SUPERFAMILY SSF46600 662 701 5.62E-11 T 22-04-2016 IPR001943 UVR domain GO:0005515 RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 SUPERFAMILY SSF52540 46 455 1.73E-128 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 SMART SM00490 501 587 5.0E-18 T 22-04-2016 IPR001650 Helicase, C-terminal RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Gene3D G3DSA:3.40.50.300 319 379 1.6E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Gene3D G3DSA:3.40.50.300 49 130 1.6E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Gene3D G3DSA:3.40.50.300 429 450 1.6E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 47 699 4.4E-304 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Pfam PF02151 UvrB/uvrC motif 672 700 6.9E-9 T 22-04-2016 IPR001943 UVR domain GO:0005515 RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Gene3D G3DSA:3.40.50.300 461 624 9.4E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 SMART SM00487 50 467 1.5E-22 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 SUPERFAMILY SSF52540 76 123 3.12E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Gene3D G3DSA:3.30.2060.10 201 276 3.3E-11 T 22-04-2016 RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Pfam PF04851 Type III restriction enzyme, res subunit 57 180 4.7E-13 T 22-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 SUPERFAMILY SSF52540 500 625 3.12E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 PANTHER PTHR24029 40 723 0.0 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RM11_RS04640 39575622b3d866063a393cd9a1397e47 757 Pfam PF00271 Helicase conserved C-terminal domain 478 586 2.0E-19 T 22-04-2016 IPR001650 Helicase, C-terminal RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 Gene3D G3DSA:3.40.50.40 207 320 1.6E-19 T 22-04-2016 IPR027473 L-asparaginase, C-terminal domain RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 Gene3D G3DSA:3.40.50.1170 1 190 3.0E-48 T 22-04-2016 IPR027474 L-asparaginase, N-terminal RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 SMART SM00870 3 320 7.3E-98 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 SUPERFAMILY SSF53774 1 325 1.07E-76 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 PANTHER PTHR11707 3 319 8.3E-50 T 22-04-2016 RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 PIRSF PIRSF001220 1 327 5.4E-78 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 PRINTS PR00139 Asparaginase/glutaminase family signature 254 272 2.19E-10 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 2.19E-10 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 PRINTS PR00139 Asparaginase/glutaminase family signature 79 97 2.19E-10 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 PANTHER PTHR11707:SF29 3 319 8.3E-50 T 22-04-2016 RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 PIRSF PIRSF500176 1 327 1.8E-71 T 22-04-2016 RM11_RS00955 f771afa7e6044b59f0e7f7be9e3773c6 329 Pfam PF00710 Asparaginase, N-terminal 3 189 2.0E-44 T 22-04-2016 IPR027474 L-asparaginase, N-terminal RM11_RS02360 ac98ca9696d47d2bb9326ef9297a6b3b 790 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 28 781 16.489 T 22-04-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 RM11_RS02360 ac98ca9696d47d2bb9326ef9297a6b3b 790 Pfam PF04453 Organic solvent tolerance protein 312 720 1.7E-70 T 22-04-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 RM11_RS02360 ac98ca9696d47d2bb9326ef9297a6b3b 790 Gene3D G3DSA:2.60.450.10 54 212 6.5E-19 T 22-04-2016 RM11_RS02360 ac98ca9696d47d2bb9326ef9297a6b3b 790 PANTHER PTHR30189 54 757 2.5E-35 T 22-04-2016 RM11_RS06115 4018bdf6692e0e43636e6484d9d638cd 217 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 22-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RM11_RS06115 4018bdf6692e0e43636e6484d9d638cd 217 Gene3D G3DSA:3.20.20.70 1 214 7.4E-74 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS06115 4018bdf6692e0e43636e6484d9d638cd 217 Hamap MF_00494 Probable transaldolase [tal]. 1 214 45.262 T 22-04-2016 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RM11_RS06115 4018bdf6692e0e43636e6484d9d638cd 217 ProSitePatterns PS00958 Transaldolase active site. 80 97 - T 22-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RM11_RS06115 4018bdf6692e0e43636e6484d9d638cd 217 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 211 8.0E-85 T 22-04-2016 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RM11_RS06115 4018bdf6692e0e43636e6484d9d638cd 217 SUPERFAMILY SSF51569 1 214 2.51E-76 T 22-04-2016 RM11_RS06115 4018bdf6692e0e43636e6484d9d638cd 217 PANTHER PTHR10683 1 211 9.1E-76 T 22-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RM11_RS06115 4018bdf6692e0e43636e6484d9d638cd 217 Pfam PF00923 Transaldolase 3 204 5.8E-56 T 22-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 22-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 5.4E-50 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 1.3E-57 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 PANTHER PTHR12220 1 134 1.5E-74 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 Gene3D G3DSA:3.90.1170.10 23 134 1.1E-53 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.448 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 SUPERFAMILY SSF54686 1 134 3.4E-57 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.7E-38 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.7E-38 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.7E-38 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.7E-38 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RM11_RS04090 1746d17cda3eee1b36cede96beb9bd90 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 22-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 Gene3D G3DSA:2.150.10.10 128 288 2.0E-22 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 Gene3D G3DSA:1.20.5.170 454 545 1.5E-5 T 22-04-2016 RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 Gene3D G3DSA:1.20.5.170 704 752 1.4E-7 T 22-04-2016 RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 Pfam PF05658 Head domain of trimeric autotransporter adhesin 195 219 4.7E-5 T 22-04-2016 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 Pfam PF03895 YadA-like C-terminal region 861 935 2.0E-15 T 22-04-2016 IPR005594 YadA-like, C-terminal RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 SUPERFAMILY SSF54523 847 935 6.28E-20 T 22-04-2016 RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 SUPERFAMILY SSF54523 798 804 6.28E-20 T 22-04-2016 RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 SUPERFAMILY SSF101967 121 289 4.05E-24 T 22-04-2016 RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 266 284 4.2E-6 T 22-04-2016 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 705 727 2.7E-6 T 22-04-2016 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 Gene3D G3DSA:3.30.1300.30 847 935 2.9E-24 T 22-04-2016 RM11_RS00680 d6703e3fb90aa5a9fe4ef064666f3eb5 938 Gene3D G3DSA:3.30.1300.30 797 804 2.9E-24 T 22-04-2016 RM11_RS03705 51356857f967b3a30ab6f31d765415f0 203 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 4 189 30.359 T 22-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 RM11_RS03705 51356857f967b3a30ab6f31d765415f0 203 SUPERFAMILY SSF53328 3 195 8.37E-65 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS03705 51356857f967b3a30ab6f31d765415f0 203 PANTHER PTHR10520 1 195 4.8E-87 T 22-04-2016 RM11_RS03705 51356857f967b3a30ab6f31d765415f0 203 Pfam PF00551 Formyl transferase 3 183 2.5E-61 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS03705 51356857f967b3a30ab6f31d765415f0 203 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 193 1.7E-69 T 22-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 RM11_RS03705 51356857f967b3a30ab6f31d765415f0 203 Gene3D G3DSA:3.40.50.170 2 197 3.6E-67 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RM11_RS05215 0364572040ddfa2813a319ec439874eb 321 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 44 251 1.7E-35 T 22-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RM11_RS02260 1de31e9d00c36dc628ad3a97fce85d73 279 PANTHER PTHR15362:SF2 32 166 8.2E-30 T 22-04-2016 RM11_RS02260 1de31e9d00c36dc628ad3a97fce85d73 279 Pfam PF08009 CDP-alcohol phosphatidyltransferase 2 219 254 2.8E-8 T 22-04-2016 IPR012616 CDP-alcohol phosphatidyltransferase, C-terminal RM11_RS02260 1de31e9d00c36dc628ad3a97fce85d73 279 PANTHER PTHR15362 32 166 8.2E-30 T 22-04-2016 RM11_RS02260 1de31e9d00c36dc628ad3a97fce85d73 279 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 38 203 1.9E-33 T 22-04-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 RM11_RS02260 1de31e9d00c36dc628ad3a97fce85d73 279 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 74 96 - T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RM11_RS02260 1de31e9d00c36dc628ad3a97fce85d73 279 Pfam PF01066 CDP-alcohol phosphatidyltransferase 33 96 5.9E-14 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RM11_RS06465 ecc2ac24906e90290c7ed0d48e41505a 248 PANTHER PTHR11922 1 200 3.8E-43 T 22-04-2016 RM11_RS06465 ecc2ac24906e90290c7ed0d48e41505a 248 SUPERFAMILY SSF52317 16 208 3.06E-42 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS06465 ecc2ac24906e90290c7ed0d48e41505a 248 PANTHER PTHR11922:SF11 1 200 3.8E-43 T 22-04-2016 RM11_RS06465 ecc2ac24906e90290c7ed0d48e41505a 248 Pfam PF00117 Glutamine amidotransferase class-I 58 198 1.1E-17 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RM11_RS06465 ecc2ac24906e90290c7ed0d48e41505a 248 Gene3D G3DSA:3.40.50.880 14 231 6.6E-52 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 PANTHER PTHR11958 23 450 2.6E-208 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 PANTHER PTHR11958:SF5 23 450 2.6E-208 T 22-04-2016 RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 PRINTS PR00173 Glutamate-aspartate symporter signature 244 263 4.7E-26 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 4.7E-26 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 4.7E-26 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 PRINTS PR00173 Glutamate-aspartate symporter signature 367 386 4.7E-26 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 PRINTS PR00173 Glutamate-aspartate symporter signature 394 414 4.7E-26 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 4.7E-26 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 Pfam PF00375 Sodium:dicarboxylate symporter family 29 439 6.0E-95 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 SUPERFAMILY SSF118215 29 438 3.4E-89 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RM11_RS01505 d4b2b2d97933cdf5520531a965c9c545 451 Gene3D G3DSA:1.10.3860.10 23 446 2.6E-93 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 SUPERFAMILY SSF48256 5 429 2.49E-167 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 PIRSF PIRSF001369 37 430 3.8E-167 T 22-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 PANTHER PTHR11739 41 434 2.5E-205 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 Gene3D G3DSA:1.10.580.10 52 280 5.5E-99 T 22-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 22-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 13 423 1.0E-236 T 22-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 Pfam PF00285 Citrate synthase, C-terminal domain 46 412 2.3E-133 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 PRINTS PR00143 Citrate synthase signature 219 234 2.3E-55 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 PRINTS PR00143 Citrate synthase signature 165 178 2.3E-55 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 PRINTS PR00143 Citrate synthase signature 380 394 2.3E-55 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 PRINTS PR00143 Citrate synthase signature 241 269 2.3E-55 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 PRINTS PR00143 Citrate synthase signature 360 376 2.3E-55 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 PRINTS PR00143 Citrate synthase signature 296 316 2.3E-55 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RM11_RS03435 415b727dc820fe381b6fb21791186e1b 438 Gene3D G3DSA:1.10.230.10 281 374 7.8E-44 T 22-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain RM11_RS03625 4219d1afea659b9c07d4e85ccbf3cc09 276 PANTHER PTHR12029 46 268 1.9E-44 T 22-04-2016 RM11_RS03625 4219d1afea659b9c07d4e85ccbf3cc09 276 SMART SM00967 45 118 5.0E-10 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RM11_RS03625 4219d1afea659b9c07d4e85ccbf3cc09 276 Gene3D G3DSA:3.40.1280.10 124 270 2.7E-40 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RM11_RS03625 4219d1afea659b9c07d4e85ccbf3cc09 276 Pfam PF00588 SpoU rRNA Methylase family 128 268 5.9E-32 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RM11_RS03625 4219d1afea659b9c07d4e85ccbf3cc09 276 SUPERFAMILY SSF55315 37 114 2.71E-12 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like RM11_RS03625 4219d1afea659b9c07d4e85ccbf3cc09 276 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 46 116 7.5E-10 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RM11_RS03625 4219d1afea659b9c07d4e85ccbf3cc09 276 Gene3D G3DSA:3.30.1330.30 45 113 2.7E-8 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like RM11_RS03625 4219d1afea659b9c07d4e85ccbf3cc09 276 SUPERFAMILY SSF75217 106 271 1.96E-38 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases RM11_RS03625 4219d1afea659b9c07d4e85ccbf3cc09 276 PANTHER PTHR12029:SF58 46 268 1.9E-44 T 22-04-2016 RM11_RS03345 b7c4d8ba5807ea150041869922fb2f14 121 SMART SM00448 3 116 6.6E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS03345 b7c4d8ba5807ea150041869922fb2f14 121 SUPERFAMILY SSF52172 3 121 6.4E-32 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS03345 b7c4d8ba5807ea150041869922fb2f14 121 Pfam PF00072 Response regulator receiver domain 5 116 4.7E-23 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS03345 b7c4d8ba5807ea150041869922fb2f14 121 PANTHER PTHR24423 2 121 4.8E-31 T 22-04-2016 RM11_RS03345 b7c4d8ba5807ea150041869922fb2f14 121 Gene3D G3DSA:3.40.50.2300 3 120 3.8E-34 T 22-04-2016 RM11_RS00710 7a307d351462d68753eaf528a2df46af 241 PIRSF PIRSF005461 21 241 4.2E-70 T 22-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RM11_RS00710 7a307d351462d68753eaf528a2df46af 241 SUPERFAMILY SSF53335 30 236 2.26E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS00710 7a307d351462d68753eaf528a2df46af 241 Gene3D G3DSA:3.40.50.150 22 236 1.1E-66 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS00710 7a307d351462d68753eaf528a2df46af 241 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 36 234 27.881 T 22-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RM11_RS00710 7a307d351462d68753eaf528a2df46af 241 Pfam PF01728 FtsJ-like methyltransferase 56 234 3.3E-50 T 22-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RM11_RS00710 7a307d351462d68753eaf528a2df46af 241 PANTHER PTHR10920 26 235 1.0E-90 T 22-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RM11_RS00710 7a307d351462d68753eaf528a2df46af 241 PANTHER PTHR10920:SF20 26 235 1.0E-90 T 22-04-2016 RM11_RS04310 c128fd6112128b052a1c6d00110f5a07 381 TIGRFAM TIGR01933 hflK: HflK protein 81 350 2.7E-64 T 22-04-2016 IPR010201 HflK GO:0016021 RM11_RS04310 c128fd6112128b052a1c6d00110f5a07 381 SUPERFAMILY SSF117892 112 255 7.85E-26 T 22-04-2016 IPR001107 Band 7 domain RM11_RS04310 c128fd6112128b052a1c6d00110f5a07 381 PRINTS PR00721 Stomatin signature 178 195 6.6E-5 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RM11_RS04310 c128fd6112128b052a1c6d00110f5a07 381 PRINTS PR00721 Stomatin signature 143 164 6.6E-5 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RM11_RS04310 c128fd6112128b052a1c6d00110f5a07 381 PANTHER PTHR10264 2 355 1.8E-66 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RM11_RS04310 c128fd6112128b052a1c6d00110f5a07 381 SMART SM00244 79 249 1.0E-29 T 22-04-2016 IPR001107 Band 7 domain RM11_RS04310 c128fd6112128b052a1c6d00110f5a07 381 PANTHER PTHR10264:SF51 2 355 1.8E-66 T 22-04-2016 IPR010201 HflK GO:0016021 RM11_RS04310 c128fd6112128b052a1c6d00110f5a07 381 Pfam PF01145 SPFH domain / Band 7 family 82 259 5.2E-27 T 22-04-2016 IPR001107 Band 7 domain RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 202 28.283 T 22-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 Pfam PF14520 Helix-hairpin-helix domain 72 129 8.9E-14 T 22-04-2016 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 SUPERFAMILY SSF46929 154 203 3.27E-7 T 22-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 SUPERFAMILY SSF47781 67 135 1.39E-20 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 Pfam PF07499 RuvA, C-terminal domain 154 202 1.5E-9 T 22-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 Pfam PF01330 RuvA N terminal domain 1 62 1.3E-17 T 22-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 181 1.9E-39 T 22-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 SUPERFAMILY SSF50249 1 63 2.23E-15 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 PANTHER PTHR33796 2 204 3.2E-59 T 22-04-2016 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 Gene3D G3DSA:1.10.8.10 152 201 4.7E-8 T 22-04-2016 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 Gene3D G3DSA:1.10.150.20 67 135 1.1E-25 T 22-04-2016 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 Gene3D G3DSA:2.40.50.140 1 64 1.1E-21 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 SMART SM00278 73 92 1.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RM11_RS05905 ebd6d1c3b44273ec2d6a0287337f44d2 205 SMART SM00278 108 127 390.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RM11_RS02695 b716c1a2885f683df98ee0882c71bb43 424 Gene3D G3DSA:3.40.47.10 12 267 8.6E-46 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02695 b716c1a2885f683df98ee0882c71bb43 424 PANTHER PTHR11712 12 114 1.8E-108 T 22-04-2016 RM11_RS02695 b716c1a2885f683df98ee0882c71bb43 424 PANTHER PTHR11712 153 423 1.8E-108 T 22-04-2016 RM11_RS02695 b716c1a2885f683df98ee0882c71bb43 424 SUPERFAMILY SSF53901 12 262 3.46E-42 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02695 b716c1a2885f683df98ee0882c71bb43 424 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 266 379 3.4E-31 T 22-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RM11_RS02695 b716c1a2885f683df98ee0882c71bb43 424 SMART SM00825 Beta-ketoacyl synthase 12 424 1.5E-12 T 22-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RM11_RS02695 b716c1a2885f683df98ee0882c71bb43 424 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 165 181 - T 22-04-2016 IPR018201 Beta-ketoacyl synthase, active site RM11_RS02695 b716c1a2885f683df98ee0882c71bb43 424 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 12 257 3.1E-30 T 22-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RM11_RS02695 b716c1a2885f683df98ee0882c71bb43 424 SUPERFAMILY SSF53901 227 422 1.87E-64 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS02695 b716c1a2885f683df98ee0882c71bb43 424 Gene3D G3DSA:3.40.47.10 274 423 1.5E-55 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS00595 6d0a598173bc6673d5140bd2818d6345 406 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 2.5E-42 T 22-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RM11_RS00595 6d0a598173bc6673d5140bd2818d6345 406 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 22-04-2016 IPR018201 Beta-ketoacyl synthase, active site RM11_RS00595 6d0a598173bc6673d5140bd2818d6345 406 SUPERFAMILY SSF53901 1 251 2.31E-62 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS00595 6d0a598173bc6673d5140bd2818d6345 406 PANTHER PTHR11712 1 405 6.7E-154 T 22-04-2016 RM11_RS00595 6d0a598173bc6673d5140bd2818d6345 406 Gene3D G3DSA:3.40.47.10 6 257 6.0E-57 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS00595 6d0a598173bc6673d5140bd2818d6345 406 SMART SM00825 Beta-ketoacyl synthase 4 406 7.4E-13 T 22-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RM11_RS00595 6d0a598173bc6673d5140bd2818d6345 406 SUPERFAMILY SSF53901 213 405 3.5E-59 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS00595 6d0a598173bc6673d5140bd2818d6345 406 Gene3D G3DSA:3.40.47.10 261 405 9.9E-46 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RM11_RS00595 6d0a598173bc6673d5140bd2818d6345 406 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 361 6.5E-29 T 22-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 Pfam PF01515 Phosphate acetyl/butaryl transferase 443 759 3.7E-81 T 22-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 SUPERFAMILY SSF51735 176 465 4.81E-90 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 Gene3D G3DSA:3.40.50.10380 20 173 3.9E-48 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 SMART SM00919 176 413 1.8E-145 T 22-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 PIRSF PIRSF036684 11 765 0.0 T 22-04-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 SUPERFAMILY SSF53223 22 174 1.01E-51 T 22-04-2016 RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 Gene3D G3DSA:3.40.50.720 174 461 2.8E-89 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 Pfam PF00390 Malic enzyme, N-terminal domain 32 164 1.7E-25 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 SMART SM01274 31 164 9.2E-78 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 Pfam PF03949 Malic enzyme, NAD binding domain 178 372 1.6E-23 T 22-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 SUPERFAMILY SSF53659 442 762 1.64E-76 T 22-04-2016 RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 Gene3D G3DSA:3.40.50.10750 588 735 8.4E-42 T 22-04-2016 RM11_RS00465 4e691018985bfaf4c52bf033e55507b4 765 ProSitePatterns PS00331 Malic enzymes signature. 172 188 - T 22-04-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RM11_RS05990 1ba19033a4268d0df7db7ba3c9f37784 125 PANTHER PTHR34981:SF1 1 122 6.5E-12 T 22-04-2016 RM11_RS05990 1ba19033a4268d0df7db7ba3c9f37784 125 Pfam PF05164 Cell division protein ZapA 4 109 1.7E-22 T 22-04-2016 IPR007838 Cell division protein ZapA-like RM11_RS05990 1ba19033a4268d0df7db7ba3c9f37784 125 SUPERFAMILY SSF102829 3 87 4.84E-23 T 22-04-2016 IPR007838 Cell division protein ZapA-like RM11_RS05990 1ba19033a4268d0df7db7ba3c9f37784 125 PANTHER PTHR34981 1 122 6.5E-12 T 22-04-2016 RM11_RS00165 6323459815cfff27b1a781cc32c559c8 439 SUPERFAMILY SSF53244 291 433 2.52E-20 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS00165 6323459815cfff27b1a781cc32c559c8 439 SUPERFAMILY SSF53623 7 291 7.79E-79 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS00165 6323459815cfff27b1a781cc32c559c8 439 TIGRFAM TIGR01499 folC: bifunctional protein FolC 25 431 1.2E-99 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RM11_RS00165 6323459815cfff27b1a781cc32c559c8 439 PANTHER PTHR11136 22 432 9.7E-97 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RM11_RS00165 6323459815cfff27b1a781cc32c559c8 439 Gene3D G3DSA:3.40.1190.10 6 292 1.7E-83 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS00165 6323459815cfff27b1a781cc32c559c8 439 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 142 157 - T 22-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 RM11_RS00165 6323459815cfff27b1a781cc32c559c8 439 Pfam PF08245 Mur ligase middle domain 48 268 3.4E-8 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RM11_RS00165 6323459815cfff27b1a781cc32c559c8 439 Gene3D G3DSA:3.90.190.20 294 432 1.7E-21 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RM11_RS00165 6323459815cfff27b1a781cc32c559c8 439 PIRSF PIRSF001563 1 436 8.8E-98 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RM11_RS00165 6323459815cfff27b1a781cc32c559c8 439 PANTHER PTHR11136:SF0 22 432 9.7E-97 T 22-04-2016 RM11_RS01975 d94eb5e1bdf30151c6caa969c25b5b16 355 Gene3D G3DSA:1.20.1560.10 57 167 3.0E-14 T 22-04-2016 RM11_RS01975 d94eb5e1bdf30151c6caa969c25b5b16 355 Pfam PF00005 ABC transporter 217 314 2.7E-15 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS01975 d94eb5e1bdf30151c6caa969c25b5b16 355 Gene3D G3DSA:3.40.50.300 199 309 5.1E-25 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01975 d94eb5e1bdf30151c6caa969c25b5b16 355 PANTHER PTHR24221 3 317 8.4E-40 T 22-04-2016 RM11_RS01975 d94eb5e1bdf30151c6caa969c25b5b16 355 SUPERFAMILY SSF90123 3 167 2.75E-16 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RM11_RS01975 d94eb5e1bdf30151c6caa969c25b5b16 355 SUPERFAMILY SSF52540 198 322 2.73E-25 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01975 d94eb5e1bdf30151c6caa969c25b5b16 355 Pfam PF00664 ABC transporter transmembrane region 57 151 8.0E-6 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 PANTHER PTHR23355:SF9 175 725 3.1E-152 T 22-04-2016 RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 ProSitePatterns PS01175 Ribonuclease II family signature. 563 587 - T 22-04-2016 IPR022966 Ribonuclease II/R, conserved site RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 Gene3D G3DSA:2.40.50.140 644 715 1.3E-15 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 SMART SM00316 642 725 3.4E-8 T 22-04-2016 IPR022967 RNA-binding domain, S1 RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 Pfam PF00575 S1 RNA binding domain 642 695 3.6E-9 T 22-04-2016 IPR003029 S1 domain GO:0003676 RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 126 714 1.6E-147 T 22-04-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 SUPERFAMILY SSF50249 642 723 3.74E-17 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 SUPERFAMILY SSF50249 235 641 1.83E-128 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 PANTHER PTHR23355 175 725 3.1E-152 T 22-04-2016 RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 SMART SM00955 265 596 8.1E-157 T 22-04-2016 RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 Hamap MF_01895 Ribonuclease R [rnr]. 39 725 47.634 T 22-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 Pfam PF00773 RNB domain 265 595 8.5E-94 T 22-04-2016 RM11_RS03240 582bb3edc5d4675112a26698137b431b 759 TIGRFAM TIGR02063 RNase_R: ribonuclease R 20 725 1.4E-213 T 22-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 PRINTS PR00086 L-lactate dehydrogenase signature 5 29 2.7E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 PRINTS PR00086 L-lactate dehydrogenase signature 117 137 2.7E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 PRINTS PR00086 L-lactate dehydrogenase signature 171 184 2.7E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 PRINTS PR00086 L-lactate dehydrogenase signature 141 159 2.7E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 PRINTS PR00086 L-lactate dehydrogenase signature 29 53 2.7E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 SUPERFAMILY SSF51735 5 144 7.66E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 PIRSF PIRSF000102 1 314 8.7E-101 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 PANTHER PTHR11540:SF16 1 316 6.0E-141 T 22-04-2016 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 Hamap MF_00487 Malate dehydrogenase [mdh]. 4 313 41.029 T 22-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 Gene3D G3DSA:3.40.50.720 2 144 3.2E-45 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 4 310 3.8E-124 T 22-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 PANTHER PTHR11540 1 316 6.0E-141 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 143 4.2E-39 T 22-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 311 1.7E-32 T 22-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 SUPERFAMILY SSF56327 144 312 1.24E-55 T 22-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RM11_RS06710 53ff5a730047bbfb069108a0a65773fe 320 Gene3D G3DSA:3.90.110.10 145 313 5.8E-62 T 22-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RM11_RS02370 4d6a575eacd6e2f9d2b21ce00e7a7810 396 PANTHER PTHR33529 1 388 1.6E-44 T 22-04-2016 RM11_RS02370 4d6a575eacd6e2f9d2b21ce00e7a7810 396 PANTHER PTHR33529:SF2 1 388 1.6E-44 T 22-04-2016 RM11_RS02370 4d6a575eacd6e2f9d2b21ce00e7a7810 396 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 3 357 6.5E-76 T 22-04-2016 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 RM11_RS02370 4d6a575eacd6e2f9d2b21ce00e7a7810 396 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 357 1.3E-54 T 22-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 429 198.626 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 Gene3D G3DSA:3.90.170.10 265 423 3.9E-65 T 22-04-2016 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 22-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 SMART SM00788 3 422 4.8E-273 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 426 3.1E-157 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 SUPERFAMILY SSF52540 1 427 4.78E-165 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 Pfam PF00709 Adenylosuccinate synthetase 4 421 3.6E-165 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 Gene3D G3DSA:3.40.440.10 1 92 4.0E-68 T 22-04-2016 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 Gene3D G3DSA:3.40.440.10 194 264 4.0E-68 T 22-04-2016 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 132 143 - T 22-04-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 Gene3D G3DSA:1.10.300.10 101 193 1.7E-28 T 22-04-2016 RM11_RS01385 450d375e08c97217abb4ac62d71217e8 429 PANTHER PTHR11846 2 426 1.3E-214 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RM11_RS05210 b170235c64dd23980a38916e4a747f43 148 Gene3D G3DSA:1.20.58.430 26 119 7.0E-4 T 22-04-2016 IPR023220 Type IV secretion system, VirB5-domain RM11_RS05190 4498a57c9b211b8d9632b9b3b84d1941 247 SUPERFAMILY SSF50199 97 228 1.02E-14 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RM11_RS05190 4498a57c9b211b8d9632b9b3b84d1941 247 Gene3D G3DSA:2.40.50.90 97 227 8.9E-11 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RM11_RS05190 4498a57c9b211b8d9632b9b3b84d1941 247 SMART SM00318 89 226 2.1E-5 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RM11_RS04260 51e5ffdd9647befa08d45324a90c5b8c 522 Pfam PF00571 CBS domain 374 423 1.3E-7 T 22-04-2016 IPR000644 CBS domain RM11_RS04260 51e5ffdd9647befa08d45324a90c5b8c 522 SUPERFAMILY SSF54631 291 426 4.03E-24 T 22-04-2016 RM11_RS04260 51e5ffdd9647befa08d45324a90c5b8c 522 Gene3D G3DSA:3.30.465.10 432 514 1.3E-23 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RM11_RS04260 51e5ffdd9647befa08d45324a90c5b8c 522 SMART SM01091 437 517 2.1E-23 T 22-04-2016 IPR005170 Transporter-associated domain RM11_RS04260 51e5ffdd9647befa08d45324a90c5b8c 522 Gene3D G3DSA:3.10.580.10 289 431 4.9E-14 T 22-04-2016 RM11_RS04260 51e5ffdd9647befa08d45324a90c5b8c 522 Pfam PF03741 Integral membrane protein TerC family 15 206 6.9E-43 T 22-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 RM11_RS04260 51e5ffdd9647befa08d45324a90c5b8c 522 SUPERFAMILY SSF56176 434 514 3.82E-19 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RM11_RS04260 51e5ffdd9647befa08d45324a90c5b8c 522 Pfam PF03471 Transporter associated domain 438 514 1.2E-18 T 22-04-2016 IPR005170 Transporter-associated domain RM11_RS00565 a4e6b3c008515ebb536a2fa44f90a617 323 SUPERFAMILY SSF81464 17 114 9.97E-18 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RM11_RS00565 a4e6b3c008515ebb536a2fa44f90a617 323 PIRSF PIRSF000292 1 315 3.7E-115 T 22-04-2016 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 RM11_RS00565 a4e6b3c008515ebb536a2fa44f90a617 323 Gene3D G3DSA:1.10.287.90 26 111 5.4E-27 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RM11_RS00565 a4e6b3c008515ebb536a2fa44f90a617 323 PANTHER PTHR22888 1 254 1.6E-94 T 22-04-2016 RM11_RS00565 a4e6b3c008515ebb536a2fa44f90a617 323 Gene3D G3DSA:2.60.40.420 125 286 1.2E-32 T 22-04-2016 IPR008972 Cupredoxin RM11_RS00565 a4e6b3c008515ebb536a2fa44f90a617 323 SUPERFAMILY SSF49503 126 258 1.14E-38 T 22-04-2016 IPR008972 Cupredoxin RM11_RS00565 a4e6b3c008515ebb536a2fa44f90a617 323 Pfam PF06481 COX Aromatic Rich Motif 240 293 1.6E-7 T 22-04-2016 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 RM11_RS00565 a4e6b3c008515ebb536a2fa44f90a617 323 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 13 239 1.3E-86 T 22-04-2016 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 RM11_RS00565 a4e6b3c008515ebb536a2fa44f90a617 323 PANTHER PTHR22888:SF13 1 254 1.6E-94 T 22-04-2016 RM11_RS03170 65a42fb0689c28609c24577e478bc939 377 PANTHER PTHR30483 1 372 4.0E-87 T 22-04-2016 RM11_RS03170 65a42fb0689c28609c24577e478bc939 377 SUPERFAMILY SSF53822 24 371 1.23E-86 T 22-04-2016 IPR028082 Periplasmic binding protein-like I RM11_RS03170 65a42fb0689c28609c24577e478bc939 377 Gene3D G3DSA:3.40.50.2300 24 220 5.6E-55 T 22-04-2016 RM11_RS03170 65a42fb0689c28609c24577e478bc939 377 Pfam PF13458 Periplasmic binding protein 25 366 5.0E-60 T 22-04-2016 IPR028081 Leucine-binding protein domain RM11_RS03170 65a42fb0689c28609c24577e478bc939 377 PANTHER PTHR30483:SF6 1 372 4.0E-87 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RM11_RS05230 a31131b35045fbd0aec8cf4b13fc29c7 288 Pfam PF03524 Conjugal transfer protein 36 259 6.4E-57 T 22-04-2016 IPR010258 Conjugal transfer, TrbG/VirB9/CagX RM11_RS05230 a31131b35045fbd0aec8cf4b13fc29c7 288 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 10 261 1.2E-69 T 22-04-2016 IPR014148 P-type conjugative transfer protein VirB9 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 SUPERFAMILY SSF55174 317 415 1.83E-18 T 22-04-2016 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 Pfam PF00579 tRNA synthetases class I (W and Y) 34 327 1.2E-73 T 22-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 9 415 2.1E-113 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 Gene3D G3DSA:3.10.290.10 321 415 2.2E-25 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 222 234 2.7E-23 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 168 183 2.7E-23 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 48 70 2.7E-23 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 189 211 2.7E-23 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 PANTHER PTHR11766 7 415 2.8E-171 T 22-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 Pfam PF01479 S4 domain 352 386 7.4E-7 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 Gene3D G3DSA:1.10.240.10 239 320 4.0E-36 T 22-04-2016 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 Gene3D G3DSA:3.40.50.620 5 238 7.9E-96 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 6 416 42.55 T 22-04-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 RM11_RS03005 c0227dc1d30cb3420107b4c18cfc887b 417 SUPERFAMILY SSF52374 7 326 7.5E-99 T 22-04-2016 RM11_RS06055 f016ca8451f7a09307f888d66446d48b 59 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 19.083 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RM11_RS06055 f016ca8451f7a09307f888d66446d48b 59 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 1.1E-22 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RM11_RS06055 f016ca8451f7a09307f888d66446d48b 59 Pfam PF01783 Ribosomal L32p protein family 2 55 1.0E-21 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RM11_RS06055 f016ca8451f7a09307f888d66446d48b 59 PANTHER PTHR35534 1 59 2.8E-25 T 22-04-2016 RM11_RS06055 f016ca8451f7a09307f888d66446d48b 59 SUPERFAMILY SSF57829 1 55 1.1E-19 T 22-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 PIRSF PIRSF000161 1 268 9.9E-74 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 124 2.1E-31 T 22-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 SUPERFAMILY SSF55347 126 236 1.61E-32 T 22-04-2016 RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 Gene3D G3DSA:3.40.50.720 1 163 1.6E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 150 167 - T 22-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 265 1.0E-71 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 PANTHER PTHR20836 1 270 1.4E-70 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 SUPERFAMILY SSF51735 236 267 3.6E-41 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 SUPERFAMILY SSF51735 1 125 3.6E-41 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 127 264 3.8E-40 T 22-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS04865 1bf3fcbc3e2f2d4df8a33cc674425908 270 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 1 265 30.456 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS02690 292de380f9220db37420ab3b37b88b01 342 Gene3D G3DSA:3.90.180.10 1 171 9.4E-35 T 22-04-2016 IPR011032 GroES-like RM11_RS02690 292de380f9220db37420ab3b37b88b01 342 SMART SM00829 5 339 7.6E-15 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RM11_RS02690 292de380f9220db37420ab3b37b88b01 342 PANTHER PTHR11695 12 342 1.6E-100 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RM11_RS02690 292de380f9220db37420ab3b37b88b01 342 SUPERFAMILY SSF51735 142 317 4.78E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02690 292de380f9220db37420ab3b37b88b01 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 133 1.6E-24 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RM11_RS02690 292de380f9220db37420ab3b37b88b01 342 Gene3D G3DSA:3.40.50.720 172 288 7.5E-33 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS02690 292de380f9220db37420ab3b37b88b01 342 Pfam PF00107 Zinc-binding dehydrogenase 177 304 2.9E-39 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RM11_RS02690 292de380f9220db37420ab3b37b88b01 342 SUPERFAMILY SSF50129 1 170 4.11E-38 T 22-04-2016 IPR011032 GroES-like RM11_RS04895 7e37a83cc380692a75e060497ab8eb8b 319 SMART SM00644 7 216 5.5E-13 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RM11_RS04895 7e37a83cc380692a75e060497ab8eb8b 319 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 17 216 1.4E-15 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RM11_RS04895 7e37a83cc380692a75e060497ab8eb8b 319 SUPERFAMILY SSF47090 232 312 4.63E-21 T 22-04-2016 IPR002477 Peptidoglycan binding-like RM11_RS04895 7e37a83cc380692a75e060497ab8eb8b 319 SUPERFAMILY SSF55846 171 234 2.29E-41 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RM11_RS04895 7e37a83cc380692a75e060497ab8eb8b 319 SUPERFAMILY SSF55846 5 104 2.29E-41 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RM11_RS04895 7e37a83cc380692a75e060497ab8eb8b 319 Gene3D G3DSA:3.40.80.10 171 235 6.0E-57 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RM11_RS04895 7e37a83cc380692a75e060497ab8eb8b 319 Gene3D G3DSA:3.40.80.10 2 104 6.0E-57 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RM11_RS03255 810b830831944f109de4739e4d49524e 211 SUPERFAMILY SSF52141 12 209 1.18E-45 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS03255 810b830831944f109de4739e4d49524e 211 Gene3D G3DSA:3.40.470.10 11 205 6.1E-35 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS03255 810b830831944f109de4739e4d49524e 211 PANTHER PTHR42160:SF1 4 211 1.3E-60 T 22-04-2016 RM11_RS03255 810b830831944f109de4739e4d49524e 211 SMART SM00987 39 204 9.8E-22 T 22-04-2016 RM11_RS03255 810b830831944f109de4739e4d49524e 211 PANTHER PTHR42160 4 211 1.3E-60 T 22-04-2016 RM11_RS03255 810b830831944f109de4739e4d49524e 211 SMART SM00986 39 204 9.8E-22 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS03255 810b830831944f109de4739e4d49524e 211 Pfam PF03167 Uracil DNA glycosylase superfamily 43 200 2.6E-19 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS00845 3d6586776ee53266bd5be14114930c75 240 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 9 231 5.4E-26 T 22-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RM11_RS00845 3d6586776ee53266bd5be14114930c75 240 PANTHER PTHR23344 5 240 4.5E-39 T 22-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RM11_RS00845 3d6586776ee53266bd5be14114930c75 240 Gene3D G3DSA:3.20.20.190 4 239 1.4E-50 T 22-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RM11_RS00845 3d6586776ee53266bd5be14114930c75 240 SUPERFAMILY SSF51695 5 236 1.47E-51 T 22-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RM11_RS02215 d7ec088ee74b27891f8c8145117f5e13 275 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 268 40.923 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RM11_RS02215 d7ec088ee74b27891f8c8145117f5e13 275 PANTHER PTHR20881 7 272 5.5E-134 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RM11_RS02215 d7ec088ee74b27891f8c8145117f5e13 275 SUPERFAMILY SSF51621 10 268 4.93E-99 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RM11_RS02215 d7ec088ee74b27891f8c8145117f5e13 275 Gene3D G3DSA:3.20.20.60 8 269 1.3E-109 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RM11_RS02215 d7ec088ee74b27891f8c8145117f5e13 275 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 8 268 1.1E-96 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RM11_RS02215 d7ec088ee74b27891f8c8145117f5e13 275 Pfam PF02548 Ketopantoate hydroxymethyltransferase 9 264 2.9E-105 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RM11_RS02215 d7ec088ee74b27891f8c8145117f5e13 275 PIRSF PIRSF000388 1 271 8.2E-106 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RM11_RS05340 7bf5361a3eaae6e6a96fefcc6726550e 281 PANTHER PTHR19278:SF1 10 23 8.0E-47 T 22-04-2016 RM11_RS05340 7bf5361a3eaae6e6a96fefcc6726550e 281 PANTHER PTHR19278:SF1 39 237 8.0E-47 T 22-04-2016 RM11_RS05340 7bf5361a3eaae6e6a96fefcc6726550e 281 PANTHER PTHR19278 10 23 8.0E-47 T 22-04-2016 RM11_RS05340 7bf5361a3eaae6e6a96fefcc6726550e 281 PANTHER PTHR19278 39 237 8.0E-47 T 22-04-2016 RM11_RS05340 7bf5361a3eaae6e6a96fefcc6726550e 281 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 15 265 3.3E-33 T 22-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS05340 7bf5361a3eaae6e6a96fefcc6726550e 281 Gene3D G3DSA:3.20.20.70 13 271 1.2E-52 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS05340 7bf5361a3eaae6e6a96fefcc6726550e 281 SMART SM00934 15 267 1.3E-36 T 22-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS05340 7bf5361a3eaae6e6a96fefcc6726550e 281 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 89 102 - T 22-04-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS05340 7bf5361a3eaae6e6a96fefcc6726550e 281 SUPERFAMILY SSF51366 10 272 3.9E-63 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RM11_RS05340 7bf5361a3eaae6e6a96fefcc6726550e 281 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 9 265 4.0E-75 T 22-04-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS04900 7bf5361a3eaae6e6a96fefcc6726550e 281 PANTHER PTHR19278:SF1 10 23 8.0E-47 T 22-04-2016 RM11_RS04900 7bf5361a3eaae6e6a96fefcc6726550e 281 PANTHER PTHR19278:SF1 39 237 8.0E-47 T 22-04-2016 RM11_RS04900 7bf5361a3eaae6e6a96fefcc6726550e 281 PANTHER PTHR19278 10 23 8.0E-47 T 22-04-2016 RM11_RS04900 7bf5361a3eaae6e6a96fefcc6726550e 281 PANTHER PTHR19278 39 237 8.0E-47 T 22-04-2016 RM11_RS04900 7bf5361a3eaae6e6a96fefcc6726550e 281 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 15 265 3.3E-33 T 22-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS04900 7bf5361a3eaae6e6a96fefcc6726550e 281 Gene3D G3DSA:3.20.20.70 13 271 1.2E-52 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS04900 7bf5361a3eaae6e6a96fefcc6726550e 281 SMART SM00934 15 267 1.3E-36 T 22-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS04900 7bf5361a3eaae6e6a96fefcc6726550e 281 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 89 102 - T 22-04-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS04900 7bf5361a3eaae6e6a96fefcc6726550e 281 SUPERFAMILY SSF51366 10 272 3.9E-63 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RM11_RS04900 7bf5361a3eaae6e6a96fefcc6726550e 281 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 9 265 4.0E-75 T 22-04-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS00935 3c50d2c1960117dbd7a0ce2a882d4a84 137 TIGRFAM TIGR00586 mutt: mutator mutT protein 13 133 2.2E-29 T 22-04-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 RM11_RS00935 3c50d2c1960117dbd7a0ce2a882d4a84 137 PRINTS PR00502 NUDIX hydrolase family signature 51 66 5.6E-9 T 22-04-2016 IPR020476 NUDIX hydrolase RM11_RS00935 3c50d2c1960117dbd7a0ce2a882d4a84 137 PRINTS PR00502 NUDIX hydrolase family signature 37 51 5.6E-9 T 22-04-2016 IPR020476 NUDIX hydrolase RM11_RS00935 3c50d2c1960117dbd7a0ce2a882d4a84 137 Gene3D G3DSA:3.90.79.10 10 134 2.6E-35 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RM11_RS00935 3c50d2c1960117dbd7a0ce2a882d4a84 137 PANTHER PTHR22769 10 132 3.6E-31 T 22-04-2016 RM11_RS00935 3c50d2c1960117dbd7a0ce2a882d4a84 137 PANTHER PTHR22769:SF35 10 132 3.6E-31 T 22-04-2016 RM11_RS00935 3c50d2c1960117dbd7a0ce2a882d4a84 137 SUPERFAMILY SSF55811 5 133 1.29E-38 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RM11_RS00935 3c50d2c1960117dbd7a0ce2a882d4a84 137 Pfam PF00293 NUDIX domain 10 130 2.5E-19 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RM11_RS00615 582d66a63b0e5c494c4240036ad6af23 77 PANTHER PTHR21109:SF3 2 68 2.5E-31 T 22-04-2016 RM11_RS00615 582d66a63b0e5c494c4240036ad6af23 77 PANTHER PTHR21109 2 68 2.5E-31 T 22-04-2016 RM11_RS00615 582d66a63b0e5c494c4240036ad6af23 77 ProSitePatterns PS01181 Ribosomal protein S21 signature. 11 23 - T 22-04-2016 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS00615 582d66a63b0e5c494c4240036ad6af23 77 PRINTS PR00976 Ribosomal protein S21 family signature 23 33 6.1E-6 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RM11_RS00615 582d66a63b0e5c494c4240036ad6af23 77 PRINTS PR00976 Ribosomal protein S21 family signature 11 20 6.1E-6 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RM11_RS00615 582d66a63b0e5c494c4240036ad6af23 77 PRINTS PR00976 Ribosomal protein S21 family signature 35 45 6.1E-6 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RM11_RS00615 582d66a63b0e5c494c4240036ad6af23 77 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 13 40 2.0E-9 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RM11_RS00615 582d66a63b0e5c494c4240036ad6af23 77 Pfam PF01165 Ribosomal protein S21 2 55 6.3E-21 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RM11_RS00615 582d66a63b0e5c494c4240036ad6af23 77 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 10 55 13.931 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RM11_RS00615 582d66a63b0e5c494c4240036ad6af23 77 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 1 56 3.2E-21 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RM11_RS02940 ab9909b6510ff3c80806f5f89dc77828 558 SUPERFAMILY SSF56281 11 416 7.08E-75 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS02940 ab9909b6510ff3c80806f5f89dc77828 558 SMART SM00849 23 220 6.6E-12 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS02940 ab9909b6510ff3c80806f5f89dc77828 558 Gene3D G3DSA:3.60.15.10 6 260 3.6E-67 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS02940 ab9909b6510ff3c80806f5f89dc77828 558 Pfam PF12706 Beta-lactamase superfamily domain 37 170 5.7E-13 T 22-04-2016 IPR001279 Metallo-beta-lactamase RM11_RS02940 ab9909b6510ff3c80806f5f89dc77828 558 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 367 415 5.2E-9 T 22-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RM11_RS02940 ab9909b6510ff3c80806f5f89dc77828 558 PANTHER PTHR11203:SF22 1 543 4.1E-152 T 22-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 RM11_RS02940 ab9909b6510ff3c80806f5f89dc77828 558 PANTHER PTHR11203 1 543 4.1E-152 T 22-04-2016 RM11_RS01675 a50e406e4654f2513f8ceabe3b918ae0 208 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 8 97 6.0E-47 T 22-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RM11_RS01675 a50e406e4654f2513f8ceabe3b918ae0 208 Gene3D G3DSA:2.170.120.20 101 192 2.9E-29 T 22-04-2016 IPR020057 Ribosomal protein L25, beta domain RM11_RS01675 a50e406e4654f2513f8ceabe3b918ae0 208 Pfam PF01386 Ribosomal L25p family 7 94 7.6E-23 T 22-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RM11_RS01675 a50e406e4654f2513f8ceabe3b918ae0 208 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 103 187 1.4E-27 T 22-04-2016 IPR020057 Ribosomal protein L25, beta domain RM11_RS01675 a50e406e4654f2513f8ceabe3b918ae0 208 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 186 27.813 T 22-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RM11_RS01675 a50e406e4654f2513f8ceabe3b918ae0 208 Gene3D G3DSA:2.40.240.10 5 97 6.6E-31 T 22-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 RM11_RS01675 a50e406e4654f2513f8ceabe3b918ae0 208 PANTHER PTHR33284 5 208 1.2E-58 T 22-04-2016 RM11_RS01675 a50e406e4654f2513f8ceabe3b918ae0 208 SUPERFAMILY SSF50715 4 190 5.06E-58 T 22-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 RM11_RS01675 a50e406e4654f2513f8ceabe3b918ae0 208 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 7 185 1.4E-39 T 22-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 Pfam PF07687 Peptidase dimerisation domain 210 358 3.8E-23 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 Pfam PF01546 Peptidase family M20/M25/M40 83 455 8.8E-36 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 SUPERFAMILY SSF53187 1 201 5.14E-59 T 22-04-2016 RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 SUPERFAMILY SSF53187 372 459 5.14E-59 T 22-04-2016 RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 PANTHER PTHR11014:SF72 288 462 2.1E-144 T 22-04-2016 RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 PANTHER PTHR11014:SF72 5 270 2.1E-144 T 22-04-2016 RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 Gene3D G3DSA:3.40.630.10 3 195 1.8E-61 T 22-04-2016 RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 Gene3D G3DSA:3.40.630.10 371 459 1.8E-61 T 22-04-2016 RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 Gene3D G3DSA:3.30.70.360 201 367 3.6E-55 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 PANTHER PTHR11014 288 462 2.1E-144 T 22-04-2016 RM11_RS01175 4b1acbdf32e07979793822b8e078d2e9 462 PANTHER PTHR11014 5 270 2.1E-144 T 22-04-2016 RM11_RS03770 274226d15562d3d2dd9f4ce22812b561 110 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 101 5.9E-46 T 22-04-2016 IPR004480 Monothiol glutaredoxin-related RM11_RS03770 274226d15562d3d2dd9f4ce22812b561 110 PIRSF PIRSF005894 1 108 7.8E-51 T 22-04-2016 IPR014434 Monothiol glutaredoxin RM11_RS03770 274226d15562d3d2dd9f4ce22812b561 110 SUPERFAMILY SSF52833 2 103 4.98E-36 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS03770 274226d15562d3d2dd9f4ce22812b561 110 Pfam PF00462 Glutaredoxin 17 81 6.2E-19 T 22-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RM11_RS03770 274226d15562d3d2dd9f4ce22812b561 110 Gene3D G3DSA:3.40.30.10 8 102 1.2E-35 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS03770 274226d15562d3d2dd9f4ce22812b561 110 PANTHER PTHR10293 2 110 1.2E-62 T 22-04-2016 IPR004480 Monothiol glutaredoxin-related RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 Gene3D G3DSA:3.30.70.1170 155 215 4.3E-8 T 22-04-2016 RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 PANTHER PTHR22807 42 426 2.1E-88 T 22-04-2016 RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 301 313 1.0E-25 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 236 246 1.0E-25 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 207 221 1.0E-25 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 351 367 1.0E-25 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 409 426 1.0E-25 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 PANTHER PTHR22807:SF33 42 426 2.1E-88 T 22-04-2016 RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 SUPERFAMILY SSF53335 119 427 3.75E-63 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 Gene3D G3DSA:3.40.50.150 218 427 7.5E-52 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS00835 d8b9897c238f96e19856b019d1f4ce7d 428 Pfam PF01189 16S rRNA methyltransferase RsmB/F 227 424 1.1E-44 T 22-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS00610 805f5d846d443bc7640e00d85dbe0576 185 Pfam PF06347 Bacterial SH3 domain 122 176 8.6E-14 T 22-04-2016 IPR010466 Protein of unknown function DUF1058 RM11_RS00610 805f5d846d443bc7640e00d85dbe0576 185 Pfam PF06347 Bacterial SH3 domain 53 109 2.7E-21 T 22-04-2016 IPR010466 Protein of unknown function DUF1058 RM11_RS00610 805f5d846d443bc7640e00d85dbe0576 185 SMART SM00287 47 110 1.0E-5 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type RM11_RS02875 0d57b6f9e91d732870c99bcae253c6af 202 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 8 160 31.029 T 22-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 RM11_RS02875 0d57b6f9e91d732870c99bcae253c6af 202 SUPERFAMILY SSF143243 7 185 1.26E-57 T 22-04-2016 RM11_RS02875 0d57b6f9e91d732870c99bcae253c6af 202 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 35 152 3.8E-43 T 22-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 RM11_RS02875 0d57b6f9e91d732870c99bcae253c6af 202 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 37 152 1.2E-40 T 22-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RM11_RS02875 0d57b6f9e91d732870c99bcae253c6af 202 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 83 139 3.0E-28 T 22-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RM11_RS02875 0d57b6f9e91d732870c99bcae253c6af 202 PANTHER PTHR10884:SF10 29 186 5.2E-88 T 22-04-2016 RM11_RS02875 0d57b6f9e91d732870c99bcae253c6af 202 PANTHER PTHR10884 29 186 5.2E-88 T 22-04-2016 RM11_RS02875 0d57b6f9e91d732870c99bcae253c6af 202 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 113 134 - T 22-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 RM11_RS03415 5d7cf3ca5f7968231766ad8b05d31da6 185 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 96 153 9.6E-15 T 22-04-2016 IPR018637 Domain of unknown function DUF2059 RM11_RS03640 8a1570b92b428dd1e0ad6fbf9e1844c0 132 Pfam PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 27 130 4.5E-25 T 22-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 RM11_RS03640 8a1570b92b428dd1e0ad6fbf9e1844c0 132 PANTHER PTHR12910:SF3 27 111 4.7E-31 T 22-04-2016 RM11_RS03640 8a1570b92b428dd1e0ad6fbf9e1844c0 132 PANTHER PTHR12910 27 111 4.7E-31 T 22-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 RM11_RS02930 4b69a9f42913632216fef1db7b47cf95 484 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 7 473 18.285 T 22-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RM11_RS02930 4b69a9f42913632216fef1db7b47cf95 484 PANTHER PTHR22773 2 483 3.2E-152 T 22-04-2016 RM11_RS02930 4b69a9f42913632216fef1db7b47cf95 484 Pfam PF00361 Proton-conducting membrane transporter 124 423 8.3E-81 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RM11_RS02930 4b69a9f42913632216fef1db7b47cf95 484 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 10 469 4.7E-136 T 22-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RM11_RS02930 4b69a9f42913632216fef1db7b47cf95 484 PANTHER PTHR22773:SF41 2 483 3.2E-152 T 22-04-2016 RM11_RS04070 34d47c0ecfa090216a4ae138ebdf04df 104 PANTHER PTHR12903 3 102 2.7E-42 T 22-04-2016 RM11_RS04070 34d47c0ecfa090216a4ae138ebdf04df 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 102 7.8E-27 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04070 34d47c0ecfa090216a4ae138ebdf04df 104 Gene3D G3DSA:2.30.30.30 3 89 9.2E-27 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 RM11_RS04070 34d47c0ecfa090216a4ae138ebdf04df 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 102 1.2E-37 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04070 34d47c0ecfa090216a4ae138ebdf04df 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 22-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04070 34d47c0ecfa090216a4ae138ebdf04df 104 SUPERFAMILY SSF50104 3 100 4.73E-34 T 22-04-2016 IPR008991 Translation protein SH3-like domain RM11_RS04070 34d47c0ecfa090216a4ae138ebdf04df 104 SMART SM00739 3 30 4.6E-5 T 22-04-2016 IPR005824 KOW RM11_RS04070 34d47c0ecfa090216a4ae138ebdf04df 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 96 21.168 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04070 34d47c0ecfa090216a4ae138ebdf04df 104 Pfam PF00467 KOW motif 6 36 2.4E-6 T 22-04-2016 IPR005824 KOW RM11_RS00355 089b1755c9884eaa011df1c506bf2a4a 394 PANTHER PTHR30563 1 376 5.3E-67 T 22-04-2016 RM11_RS00355 089b1755c9884eaa011df1c506bf2a4a 394 Pfam PF02646 RmuC family 94 373 2.0E-58 T 22-04-2016 IPR003798 DNA recombination RmuC RM11_RS01880 bfab487420181058accc43fe466e0cdf 424 Gene3D G3DSA:3.30.830.10 13 224 4.7E-59 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RM11_RS01880 bfab487420181058accc43fe466e0cdf 424 SUPERFAMILY SSF63411 5 206 2.87E-59 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RM11_RS01880 bfab487420181058accc43fe466e0cdf 424 PANTHER PTHR11851 3 415 7.6E-131 T 22-04-2016 RM11_RS01880 bfab487420181058accc43fe466e0cdf 424 SUPERFAMILY SSF63411 225 407 1.75E-45 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RM11_RS01880 bfab487420181058accc43fe466e0cdf 424 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 34 57 - T 22-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RM11_RS01880 bfab487420181058accc43fe466e0cdf 424 Gene3D G3DSA:3.30.830.10 225 414 1.0E-60 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RM11_RS01880 bfab487420181058accc43fe466e0cdf 424 Pfam PF00675 Insulinase (Peptidase family M16) 15 160 1.5E-41 T 22-04-2016 IPR011765 Peptidase M16, N-terminal RM11_RS01880 bfab487420181058accc43fe466e0cdf 424 Pfam PF05193 Peptidase M16 inactive domain 167 338 8.3E-34 T 22-04-2016 IPR007863 Peptidase M16, C-terminal RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 306 313 - T 22-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 147 449 1.3E-97 T 22-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 PANTHER PTHR11963 104 455 1.4E-132 T 22-04-2016 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 SUPERFAMILY SSF53187 142 454 7.85E-104 T 22-04-2016 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 SUPERFAMILY SSF52949 36 132 5.24E-5 T 22-04-2016 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 PANTHER PTHR11963:SF13 104 455 1.4E-132 T 22-04-2016 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 PRINTS PR00481 Cytosol aminopeptidase signature 330 345 3.6E-44 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 PRINTS PR00481 Cytosol aminopeptidase signature 302 322 3.6E-44 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 PRINTS PR00481 Cytosol aminopeptidase signature 243 264 3.6E-44 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 PRINTS PR00481 Cytosol aminopeptidase signature 280 301 3.6E-44 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 PRINTS PR00481 Cytosol aminopeptidase signature 221 238 3.6E-44 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RM11_RS00945 672a8403deb37c2c0569da89f77ceae6 455 Gene3D G3DSA:3.40.630.10 135 454 1.4E-112 T 22-04-2016 RM11_RS04065 df4c1d923fdb4aadebd80e644d52be02 185 PANTHER PTHR11994 3 184 7.6E-92 T 22-04-2016 RM11_RS04065 df4c1d923fdb4aadebd80e644d52be02 185 ProSitePatterns PS00358 Ribosomal protein L5 signature. 63 79 - T 22-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04065 df4c1d923fdb4aadebd80e644d52be02 185 Pfam PF00281 Ribosomal protein L5 30 86 7.9E-23 T 22-04-2016 IPR031310 Ribosomal protein L5, N-terminal RM11_RS04065 df4c1d923fdb4aadebd80e644d52be02 185 SUPERFAMILY SSF55282 9 184 2.31E-76 T 22-04-2016 IPR022803 Ribosomal protein L5 domain RM11_RS04065 df4c1d923fdb4aadebd80e644d52be02 185 PIRSF PIRSF002161 3 185 6.8E-67 T 22-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 RM11_RS04065 df4c1d923fdb4aadebd80e644d52be02 185 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 7 185 41.467 T 22-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04065 df4c1d923fdb4aadebd80e644d52be02 185 Gene3D G3DSA:3.30.1440.10 8 184 2.8E-76 T 22-04-2016 IPR022803 Ribosomal protein L5 domain RM11_RS04065 df4c1d923fdb4aadebd80e644d52be02 185 Pfam PF00673 ribosomal L5P family C-terminus 90 183 4.8E-41 T 22-04-2016 IPR031309 Ribosomal protein L5, C-terminal RM11_RS02100 82d3adc06762975627e4a62f5d992772 65 PANTHER PTHR34472 1 65 1.0E-14 T 22-04-2016 RM11_RS02100 82d3adc06762975627e4a62f5d992772 65 Gene3D G3DSA:3.10.20.30 1 65 1.1E-18 T 22-04-2016 IPR012675 Beta-grasp domain RM11_RS02100 82d3adc06762975627e4a62f5d992772 65 SUPERFAMILY SSF54285 2 64 1.6E-15 T 22-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RM11_RS02100 82d3adc06762975627e4a62f5d992772 65 PANTHER PTHR34472:SF1 1 65 1.0E-14 T 22-04-2016 RM11_RS02100 82d3adc06762975627e4a62f5d992772 65 Pfam PF02597 ThiS family 8 65 2.0E-9 T 22-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 RM11_RS02100 82d3adc06762975627e4a62f5d992772 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 65 1.1E-17 T 22-04-2016 IPR010035 ThiS, thiamine-biosynthesis RM11_RS02275 f1d17034be0d111f7c05b2d75193237d 189 Pfam PF02674 Colicin V production protein 6 149 5.9E-29 T 22-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RM11_RS02275 f1d17034be0d111f7c05b2d75193237d 189 PANTHER PTHR36926 2 157 1.1E-31 T 22-04-2016 RM11_RS02275 f1d17034be0d111f7c05b2d75193237d 189 PANTHER PTHR36926:SF1 2 157 1.1E-31 T 22-04-2016 RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 SUPERFAMILY SSF56601 15 275 6.0E-72 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 PANTHER PTHR21581 42 274 4.5E-61 T 22-04-2016 RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 SUPERFAMILY SSF110997 367 448 3.66E-7 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 41 259 1.7E-59 T 22-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 PANTHER PTHR21581:SF3 42 274 4.5E-61 T 22-04-2016 RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 Gene3D G3DSA:3.30.70.1070 367 447 1.1E-5 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 146 159 2.7E-11 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 66 77 2.7E-11 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 119 136 2.7E-11 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 Pfam PF05036 Sporulation related domain 369 446 8.1E-11 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 RM11_RS03545 8af5bfc54176a5017e26f3498ee9aa45 450 Gene3D G3DSA:3.40.710.10 19 274 2.0E-85 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 ProSitePatterns PS00056 Ribosomal protein S17 signature. 54 66 - T 22-04-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 Gene3D G3DSA:2.40.50.140 3 75 2.3E-31 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 PRINTS PR00973 Ribosomal protein S17 family signature 54 64 3.3E-10 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 PRINTS PR00973 Ribosomal protein S17 family signature 22 45 3.3E-10 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 PRINTS PR00973 Ribosomal protein S17 family signature 64 71 3.3E-10 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 Pfam PF00366 Ribosomal protein S17 8 74 1.6E-29 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 74 6.0E-27 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 3 74 4.2E-34 T 22-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 1 77 23.174 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 PANTHER PTHR10744 1 75 1.3E-31 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04080 6ed6705ada50cd1d38e63a9ad48f4ef4 79 SUPERFAMILY SSF50249 3 75 7.71E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00420 9534a5f8d826a1d63e7a25faeb4decd0 128 PANTHER PTHR35813:SF1 1 98 2.4E-29 T 22-04-2016 RM11_RS00420 9534a5f8d826a1d63e7a25faeb4decd0 128 PANTHER PTHR35813 1 98 2.4E-29 T 22-04-2016 RM11_RS00420 9534a5f8d826a1d63e7a25faeb4decd0 128 Pfam PF04304 Protein of unknown function (DUF454) 12 103 9.7E-35 T 22-04-2016 IPR007401 Protein of unknown function DUF454 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 2 468 3.8E-174 T 22-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 Gene3D G3DSA:3.50.50.60 1 144 1.2E-36 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PIRSF PIRSF000350 1 467 3.5E-92 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PANTHER PTHR22912:SF151 2 461 1.8E-243 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 2.8E-78 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 410 425 2.8E-78 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 2.8E-78 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 2.8E-78 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 37 52 2.8E-78 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 2.8E-78 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 2.8E-78 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 345 366 2.8E-78 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 2.8E-78 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 136 154 1.8E-40 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 1.8E-40 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 1.8E-40 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.8E-40 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 1.8E-40 T 22-04-2016 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 Gene3D G3DSA:3.50.50.60 145 336 1.7E-53 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 330 1.7E-71 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 38 48 - T 22-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 349 458 7.0E-41 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 Gene3D G3DSA:3.30.390.30 337 465 8.1E-51 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 SUPERFAMILY SSF55424 345 467 5.15E-43 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 SUPERFAMILY SSF51905 1 324 9.29E-66 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06685 1d9b7306d7bc3b3f890c35b3ec5ab98a 468 PANTHER PTHR22912 2 461 1.8E-243 T 22-04-2016 RM11_RS02000 875e60965e786b1d06a5de1d41e25373 716 Gene3D G3DSA:3.40.710.10 286 647 6.5E-108 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS02000 875e60965e786b1d06a5de1d41e25373 716 SUPERFAMILY SSF56601 315 648 2.82E-110 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS02000 875e60965e786b1d06a5de1d41e25373 716 SUPERFAMILY SSF56601 266 288 2.82E-110 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RM11_RS02000 875e60965e786b1d06a5de1d41e25373 716 PANTHER PTHR32282:SF5 33 647 1.6E-182 T 22-04-2016 RM11_RS02000 875e60965e786b1d06a5de1d41e25373 716 Pfam PF00905 Penicillin binding protein transpeptidase domain 372 640 8.4E-26 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RM11_RS02000 875e60965e786b1d06a5de1d41e25373 716 PANTHER PTHR32282 33 647 1.6E-182 T 22-04-2016 RM11_RS02000 875e60965e786b1d06a5de1d41e25373 716 SUPERFAMILY SSF53955 99 311 3.09E-70 T 22-04-2016 IPR023346 Lysozyme-like domain RM11_RS02000 875e60965e786b1d06a5de1d41e25373 716 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 123 646 4.8E-181 T 22-04-2016 RM11_RS02000 875e60965e786b1d06a5de1d41e25373 716 Pfam PF00912 Transglycosylase 123 284 5.8E-61 T 22-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RM11_RS02000 875e60965e786b1d06a5de1d41e25373 716 Gene3D G3DSA:1.10.3810.10 121 285 1.2E-68 T 22-04-2016 RM11_RS02285 d3df49f1fc3a27ad71326065249f6fe6 500 Gene3D G3DSA:1.10.860.10 23 124 3.8E-26 T 22-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RM11_RS02285 d3df49f1fc3a27ad71326065249f6fe6 500 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 490 6.4E-155 T 22-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RM11_RS02285 d3df49f1fc3a27ad71326065249f6fe6 500 Pfam PF00772 DnaB-like helicase N terminal domain 23 124 2.0E-26 T 22-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RM11_RS02285 d3df49f1fc3a27ad71326065249f6fe6 500 SUPERFAMILY SSF52540 200 481 9.64E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02285 d3df49f1fc3a27ad71326065249f6fe6 500 SUPERFAMILY SSF48024 21 133 7.98E-32 T 22-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RM11_RS02285 d3df49f1fc3a27ad71326065249f6fe6 500 Gene3D G3DSA:3.40.50.300 187 491 2.9E-97 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02285 d3df49f1fc3a27ad71326065249f6fe6 500 Pfam PF03796 DnaB-like helicase C terminal domain 201 488 1.5E-101 T 22-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 RM11_RS02285 d3df49f1fc3a27ad71326065249f6fe6 500 PANTHER PTHR30153 450 498 1.0E-167 T 22-04-2016 RM11_RS02285 d3df49f1fc3a27ad71326065249f6fe6 500 PANTHER PTHR30153 7 433 1.0E-167 T 22-04-2016 RM11_RS02285 d3df49f1fc3a27ad71326065249f6fe6 500 SMART SM00382 218 431 6.5E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS01995 58eefbdc7af29f7c679a4baa5ef74646 198 Gene3D G3DSA:2.60.120.600 32 195 7.9E-16 T 22-04-2016 IPR010621 Domain of unknown function DUF1214 RM11_RS01995 58eefbdc7af29f7c679a4baa5ef74646 198 SUPERFAMILY SSF160935 23 169 4.97E-17 T 22-04-2016 RM11_RS01995 58eefbdc7af29f7c679a4baa5ef74646 198 PIRSF PIRSF009471 1 194 2.3E-53 T 22-04-2016 IPR012038 Uncharacterised conserved protein UCP009471 RM11_RS01995 58eefbdc7af29f7c679a4baa5ef74646 198 Pfam PF06742 Protein of unknown function (DUF1214) 72 171 1.6E-11 T 22-04-2016 IPR010621 Domain of unknown function DUF1214 RM11_RS05860 fdc1a6c7ba83f4f07449b53c1ee7754b 229 Pfam PF06242 Protein of unknown function (DUF1013) 35 172 1.3E-61 T 22-04-2016 IPR010421 Protein of unknown function DUF1013 RM11_RS04770 ebb20d8ff44146f778865c8c950580f7 541 SUPERFAMILY SSF53850 33 536 3.08E-111 T 22-04-2016 RM11_RS04770 ebb20d8ff44146f778865c8c950580f7 541 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 451 1.3E-74 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain RM11_RS04770 ebb20d8ff44146f778865c8c950580f7 541 PIRSF PIRSF002741 6 538 4.4E-79 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RM11_RS04770 ebb20d8ff44146f778865c8c950580f7 541 PANTHER PTHR30290 1 539 7.6E-99 T 22-04-2016 RM11_RS04770 ebb20d8ff44146f778865c8c950580f7 541 Gene3D G3DSA:3.10.105.10 307 512 3.3E-47 T 22-04-2016 RM11_RS04770 ebb20d8ff44146f778865c8c950580f7 541 Gene3D G3DSA:3.40.190.10 163 306 9.4E-36 T 22-04-2016 RM11_RS04770 ebb20d8ff44146f778865c8c950580f7 541 Gene3D G3DSA:3.90.76.10 70 162 1.4E-20 T 22-04-2016 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 768 780 8.3E-20 T 22-04-2016 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 732 747 8.3E-20 T 22-04-2016 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 565 584 8.3E-20 T 22-04-2016 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 715 730 8.3E-20 T 22-04-2016 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 SUPERFAMILY SSF47831 314 411 2.22E-20 T 22-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 Gene3D G3DSA:3.50.30.10 403 523 1.1E-28 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 Gene3D G3DSA:3.40.930.10 9 151 7.5E-32 T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 10 146 4.3E-26 T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 Pfam PF05524 PEP-utilising enzyme, N-terminal 279 397 3.4E-18 T 22-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 531 806 6.2E-94 T 22-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 Pfam PF00381 PTS HPr component phosphorylation site 167 243 1.4E-12 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 715 733 - T 22-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 Gene3D G3DSA:1.10.274.10 315 402 2.5E-20 T 22-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 SUPERFAMILY SSF55804 10 147 4.97E-32 T 22-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 Gene3D G3DSA:3.30.1340.10 167 240 4.6E-16 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 54 70 - T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 176 183 - T 22-04-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 SUPERFAMILY SSF52009 397 515 3.14E-26 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 PANTHER PTHR22931:SF15 315 818 2.2E-194 T 22-04-2016 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 PRINTS PR00107 Phosphocarrier protein signature 201 216 5.1E-5 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 PRINTS PR00107 Phosphocarrier protein signature 176 192 5.1E-5 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 PRINTS PR00107 Phosphocarrier protein signature 216 233 5.1E-5 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 277 832 6.1E-143 T 22-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 SUPERFAMILY SSF55594 166 240 1.57E-15 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 PANTHER PTHR22931 315 818 2.2E-194 T 22-04-2016 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 Gene3D G3DSA:3.20.20.60 531 833 6.3E-92 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 SUPERFAMILY SSF51621 529 817 3.14E-93 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RM11_RS00660 f7a06997770859d04af2b2ee84b3eeda 837 Pfam PF00391 PEP-utilising enzyme, mobile domain 424 497 3.5E-20 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RM11_RS00050 0fa8870fe9b8ece8323ae1002deea298 167 PANTHER PTHR33695 1 165 2.4E-39 T 22-04-2016 RM11_RS00050 0fa8870fe9b8ece8323ae1002deea298 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 95 110 2.6E-16 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RM11_RS00050 0fa8870fe9b8ece8323ae1002deea298 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 50 58 2.6E-16 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RM11_RS00050 0fa8870fe9b8ece8323ae1002deea298 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 132 148 2.6E-16 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RM11_RS00050 0fa8870fe9b8ece8323ae1002deea298 167 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 4 157 15.925 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RM11_RS00050 0fa8870fe9b8ece8323ae1002deea298 167 PANTHER PTHR33695:SF1 1 165 2.4E-39 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RM11_RS00050 0fa8870fe9b8ece8323ae1002deea298 167 ProSitePatterns PS00855 Signal peptidases II signature. 98 110 - T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RM11_RS00050 0fa8870fe9b8ece8323ae1002deea298 167 TIGRFAM TIGR00077 lspA: signal peptidase II 3 159 7.7E-39 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RM11_RS00050 0fa8870fe9b8ece8323ae1002deea298 167 Pfam PF01252 Signal peptidase (SPase) II 14 149 6.5E-32 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 2 308 1.1E-87 T 22-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 Gene3D G3DSA:3.30.565.10 2 215 4.7E-68 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 SMART SM01340 210 328 5.0E-51 T 22-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 123 7.3E-9 T 22-04-2016 RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 SUPERFAMILY SSF55874 3 197 4.06E-47 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 Gene3D G3DSA:3.30.230.10 216 327 1.9E-31 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 PANTHER PTHR10073 3 612 6.9E-136 T 22-04-2016 RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 SUPERFAMILY SSF118116 421 611 7.59E-58 T 22-04-2016 RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 210 327 1.3E-33 T 22-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 609 27.308 T 22-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 SMART SM00853 426 569 1.0E-56 T 22-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 SUPERFAMILY SSF54211 201 328 4.17E-34 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 91 97 - T 22-04-2016 IPR014762 DNA mismatch repair, conserved site RM11_RS01275 972ef207bd99c48b4295749ca186b662 612 Pfam PF08676 MutL C terminal dimerisation domain 422 568 7.5E-49 T 22-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RM11_RS01610 ff76b3cb008ab35a13e52f9c9e639ff6 282 Gene3D G3DSA:3.90.226.10 19 129 5.9E-35 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS01610 ff76b3cb008ab35a13e52f9c9e639ff6 282 Gene3D G3DSA:3.90.226.10 197 229 5.9E-35 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS01610 ff76b3cb008ab35a13e52f9c9e639ff6 282 PANTHER PTHR30341:SF1 19 247 1.2E-85 T 22-04-2016 RM11_RS01610 ff76b3cb008ab35a13e52f9c9e639ff6 282 SUPERFAMILY SSF52096 12 133 5.6E-35 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS01610 ff76b3cb008ab35a13e52f9c9e639ff6 282 SUPERFAMILY SSF52096 162 221 5.6E-35 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RM11_RS01610 ff76b3cb008ab35a13e52f9c9e639ff6 282 PRINTS PR00127 Clp protease catalytic subunit P signature 199 218 8.5E-5 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RM11_RS01610 ff76b3cb008ab35a13e52f9c9e639ff6 282 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 8.5E-5 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RM11_RS01610 ff76b3cb008ab35a13e52f9c9e639ff6 282 PRINTS PR00127 Clp protease catalytic subunit P signature 94 111 8.5E-5 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RM11_RS01610 ff76b3cb008ab35a13e52f9c9e639ff6 282 Pfam PF01343 Peptidase family S49 87 229 1.7E-30 T 22-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RM11_RS01610 ff76b3cb008ab35a13e52f9c9e639ff6 282 PANTHER PTHR30341 19 247 1.2E-85 T 22-04-2016 RM11_RS03025 b44492514c76930c217938a4860b0466 251 SMART SM00382 28 225 1.7E-6 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS03025 b44492514c76930c217938a4860b0466 251 PANTHER PTHR24220 3 249 8.9E-111 T 22-04-2016 RM11_RS03025 b44492514c76930c217938a4860b0466 251 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS03025 b44492514c76930c217938a4860b0466 251 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 245 1.6E-101 T 22-04-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 RM11_RS03025 b44492514c76930c217938a4860b0466 251 SUPERFAMILY SSF52540 2 232 4.33E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03025 b44492514c76930c217938a4860b0466 251 Gene3D G3DSA:3.40.50.300 1 233 7.9E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03025 b44492514c76930c217938a4860b0466 251 Pfam PF00005 ABC transporter 20 174 4.1E-19 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS03025 b44492514c76930c217938a4860b0466 251 PANTHER PTHR24220:SF85 3 249 8.9E-111 T 22-04-2016 RM11_RS04560 46d64554660fd741916ee96995519caf 642 SUPERFAMILY SSF56731 117 427 2.49E-98 T 22-04-2016 RM11_RS04560 46d64554660fd741916ee96995519caf 642 Gene3D G3DSA:3.90.980.10 117 243 1.3E-42 T 22-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RM11_RS04560 46d64554660fd741916ee96995519caf 642 PIRSF PIRSF002811 1 622 4.1E-135 T 22-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RM11_RS04560 46d64554660fd741916ee96995519caf 642 SMART SM00400 39 93 5.4E-23 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RM11_RS04560 46d64554660fd741916ee96995519caf 642 SUPERFAMILY SSF57783 1 104 5.78E-32 T 22-04-2016 RM11_RS04560 46d64554660fd741916ee96995519caf 642 Gene3D G3DSA:3.40.1360.10 244 373 3.8E-40 T 22-04-2016 RM11_RS04560 46d64554660fd741916ee96995519caf 642 Gene3D G3DSA:3.90.580.10 1 103 2.3E-34 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RM11_RS04560 46d64554660fd741916ee96995519caf 642 Pfam PF01807 CHC2 zinc finger 5 102 2.3E-25 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RM11_RS04560 46d64554660fd741916ee96995519caf 642 Pfam PF13662 Toprim domain 269 345 2.6E-16 T 22-04-2016 IPR006171 Toprim domain RM11_RS04560 46d64554660fd741916ee96995519caf 642 TIGRFAM TIGR01391 dnaG: DNA primase 3 427 3.2E-126 T 22-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 RM11_RS04560 46d64554660fd741916ee96995519caf 642 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 254 2.5E-41 T 22-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RM11_RS04560 46d64554660fd741916ee96995519caf 642 Hamap MF_00974 DNA primase [dnaG]. 2 609 24.872 T 22-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RM11_RS04560 46d64554660fd741916ee96995519caf 642 SMART SM00493 267 338 1.3E-15 T 22-04-2016 IPR006171 Toprim domain RM11_RS01380 d4b5d9d31bda26ff48c1bb14dd6ad90f 387 SUPERFAMILY SSF53383 11 381 1.87E-73 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RM11_RS01380 d4b5d9d31bda26ff48c1bb14dd6ad90f 387 Pfam PF00266 Aminotransferase class-V 41 316 4.7E-6 T 22-04-2016 IPR000192 Aminotransferase class V domain RM11_RS01380 d4b5d9d31bda26ff48c1bb14dd6ad90f 387 Gene3D G3DSA:3.40.640.10 26 265 3.0E-48 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RM11_RS01380 d4b5d9d31bda26ff48c1bb14dd6ad90f 387 PANTHER PTHR21152:SF23 6 380 4.1E-166 T 22-04-2016 RM11_RS01380 d4b5d9d31bda26ff48c1bb14dd6ad90f 387 PANTHER PTHR21152 6 380 4.1E-166 T 22-04-2016 RM11_RS01380 d4b5d9d31bda26ff48c1bb14dd6ad90f 387 TIGRFAM TIGR01365 serC_2: phosphoserine aminotransferase 10 382 3.7E-202 T 22-04-2016 IPR006271 Phosphoserine aminotransferase, Methanosarcina-type GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 RM11_RS01380 d4b5d9d31bda26ff48c1bb14dd6ad90f 387 PIRSF PIRSF000525 5 384 2.8E-52 T 22-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 RM11_RS00035 b775fd60bd58af8599eb914ca7269d32 291 Gene3D G3DSA:3.60.10.10 41 204 2.4E-8 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RM11_RS00035 b775fd60bd58af8599eb914ca7269d32 291 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 51 268 2.6E-12 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RM11_RS00035 b775fd60bd58af8599eb914ca7269d32 291 PANTHER PTHR14859 41 205 9.8E-16 T 22-04-2016 IPR027317 PGAP2-interacting protein RM11_RS00035 b775fd60bd58af8599eb914ca7269d32 291 PANTHER PTHR14859:SF0 41 205 9.8E-16 T 22-04-2016 RM11_RS00035 b775fd60bd58af8599eb914ca7269d32 291 SUPERFAMILY SSF56219 31 279 1.31E-35 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RM11_RS04325 b129589d211880c7c3c8bf38c1175455 435 Gene3D G3DSA:1.20.1250.20 239 425 5.9E-16 T 22-04-2016 RM11_RS04325 b129589d211880c7c3c8bf38c1175455 435 Gene3D G3DSA:1.20.1250.20 19 224 1.8E-26 T 22-04-2016 RM11_RS04325 b129589d211880c7c3c8bf38c1175455 435 Pfam PF00083 Sugar (and other) transporter 219 417 1.3E-10 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RM11_RS04325 b129589d211880c7c3c8bf38c1175455 435 Pfam PF00083 Sugar (and other) transporter 23 217 2.5E-25 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RM11_RS04325 b129589d211880c7c3c8bf38c1175455 435 PANTHER PTHR23508:SF12 11 435 3.0E-205 T 22-04-2016 RM11_RS04325 b129589d211880c7c3c8bf38c1175455 435 SUPERFAMILY SSF103473 15 426 7.06E-64 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS04325 b129589d211880c7c3c8bf38c1175455 435 PANTHER PTHR23508 11 435 3.0E-205 T 22-04-2016 RM11_RS04325 b129589d211880c7c3c8bf38c1175455 435 ProSitePatterns PS00217 Sugar transport proteins signature 2. 129 154 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RM11_RS01495 bc7231ad1ddf29b233fa13a0a738195c 457 PANTHER PTHR34378 15 457 8.5E-217 T 22-04-2016 RM11_RS01495 bc7231ad1ddf29b233fa13a0a738195c 457 PIRSF PIRSF017901 2 457 2.6E-169 T 22-04-2016 RM11_RS01495 bc7231ad1ddf29b233fa13a0a738195c 457 PANTHER PTHR34378:SF1 15 457 8.5E-217 T 22-04-2016 RM11_RS01495 bc7231ad1ddf29b233fa13a0a738195c 457 SUPERFAMILY SSF55931 307 442 1.86E-57 T 22-04-2016 RM11_RS01495 bc7231ad1ddf29b233fa13a0a738195c 457 SUPERFAMILY SSF55931 24 267 1.86E-57 T 22-04-2016 RM11_RS01495 bc7231ad1ddf29b233fa13a0a738195c 457 TIGRFAM TIGR01436 glu_cys_lig_pln: glutamate--cysteine ligase 13 457 2.7E-181 T 22-04-2016 IPR011556 Glutamate--cysteine ligase, plant GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 RM11_RS01495 bc7231ad1ddf29b233fa13a0a738195c 457 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 50 361 1.8E-78 T 22-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RM11_RS04015 b8b3e66977871349a2cee15325384749 122 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 22-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 RM11_RS04015 b8b3e66977871349a2cee15325384749 122 Gene3D G3DSA:1.10.8.50 2 72 1.4E-28 T 22-04-2016 RM11_RS04015 b8b3e66977871349a2cee15325384749 122 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 27.573 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04015 b8b3e66977871349a2cee15325384749 122 PANTHER PTHR10871 2 122 8.4E-62 T 22-04-2016 RM11_RS04015 b8b3e66977871349a2cee15325384749 122 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 6.5E-52 T 22-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04015 b8b3e66977871349a2cee15325384749 122 Gene3D G3DSA:4.10.910.10 73 122 1.4E-27 T 22-04-2016 IPR027437 30s ribosomal protein S13, C-terminal RM11_RS04015 b8b3e66977871349a2cee15325384749 122 PIRSF PIRSF002134 1 122 2.9E-42 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04015 b8b3e66977871349a2cee15325384749 122 SUPERFAMILY SSF46946 2 121 9.42E-45 T 22-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RM11_RS04015 b8b3e66977871349a2cee15325384749 122 Pfam PF00416 Ribosomal protein S13/S18 3 109 2.8E-29 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03490 d47d559b40ff5665af919f92702f17b4 382 Pfam PF02163 Peptidase family M50 20 367 2.1E-66 T 22-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 RM11_RS03490 d47d559b40ff5665af919f92702f17b4 382 PANTHER PTHR22939 142 382 9.2E-54 T 22-04-2016 RM11_RS03490 d47d559b40ff5665af919f92702f17b4 382 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 141 377 3.0E-46 T 22-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 RM11_RS03490 d47d559b40ff5665af919f92702f17b4 382 PANTHER PTHR22939:SF78 142 382 9.2E-54 T 22-04-2016 RM11_RS03490 d47d559b40ff5665af919f92702f17b4 382 Gene3D G3DSA:2.30.42.10 109 210 2.0E-19 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS03490 d47d559b40ff5665af919f92702f17b4 382 SUPERFAMILY SSF50156 101 209 4.6E-15 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RM11_RS06290 60da3f9ab8e7c4ae4147caa0578c626b 263 SUPERFAMILY SSF101082 61 240 3.4E-38 T 22-04-2016 IPR023220 Type IV secretion system, VirB5-domain RM11_RS06290 60da3f9ab8e7c4ae4147caa0578c626b 263 Pfam PF07996 Type IV secretion system proteins 60 237 1.7E-19 T 22-04-2016 IPR014158 Type IV secretion system, VirB5 RM11_RS06290 60da3f9ab8e7c4ae4147caa0578c626b 263 Gene3D G3DSA:1.20.58.430 66 240 5.3E-46 T 22-04-2016 IPR023220 Type IV secretion system, VirB5-domain RM11_RS02130 0b708bb43bba0dd5d490ce8ca906b0bf 341 Gene3D G3DSA:3.40.1570.10 195 340 2.5E-15 T 22-04-2016 RM11_RS02130 0b708bb43bba0dd5d490ce8ca906b0bf 341 SUPERFAMILY SSF144064 6 340 1.37E-121 T 22-04-2016 RM11_RS02130 0b708bb43bba0dd5d490ce8ca906b0bf 341 Pfam PF05171 Haemin-degrading HemS.ChuX domain 206 338 1.3E-39 T 22-04-2016 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 RM11_RS02130 0b708bb43bba0dd5d490ce8ca906b0bf 341 Pfam PF05171 Haemin-degrading HemS.ChuX domain 28 155 3.1E-30 T 22-04-2016 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 RM11_RS01180 ca20940e388aef6ba57c33296f736585 206 SMART SM00474 1 171 2.1E-38 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RM11_RS01180 ca20940e388aef6ba57c33296f736585 206 PANTHER PTHR12124 22 189 1.9E-76 T 22-04-2016 RM11_RS01180 ca20940e388aef6ba57c33296f736585 206 Pfam PF01612 3'-5' exonuclease 17 170 1.3E-37 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RM11_RS01180 ca20940e388aef6ba57c33296f736585 206 SUPERFAMILY SSF53098 18 193 4.64E-49 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS01180 ca20940e388aef6ba57c33296f736585 206 Gene3D G3DSA:3.30.420.10 20 178 1.9E-22 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS01180 ca20940e388aef6ba57c33296f736585 206 PANTHER PTHR12124:SF48 22 189 1.9E-76 T 22-04-2016 RM11_RS01040 0f073ca14d177797cd9150ed7f6d7977 339 Gene3D G3DSA:3.30.465.10 236 326 2.1E-24 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RM11_RS01040 0f073ca14d177797cd9150ed7f6d7977 339 SUPERFAMILY SSF54631 83 246 2.44E-30 T 22-04-2016 RM11_RS01040 0f073ca14d177797cd9150ed7f6d7977 339 Gene3D G3DSA:3.10.580.10 73 235 8.3E-15 T 22-04-2016 RM11_RS01040 0f073ca14d177797cd9150ed7f6d7977 339 Pfam PF00571 CBS domain 177 228 0.0018 T 22-04-2016 IPR000644 CBS domain RM11_RS01040 0f073ca14d177797cd9150ed7f6d7977 339 Pfam PF00571 CBS domain 89 145 2.6E-5 T 22-04-2016 IPR000644 CBS domain RM11_RS01040 0f073ca14d177797cd9150ed7f6d7977 339 SUPERFAMILY SSF56176 241 329 1.66E-20 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RM11_RS01040 0f073ca14d177797cd9150ed7f6d7977 339 Pfam PF03471 Transporter associated domain 244 324 1.2E-20 T 22-04-2016 IPR005170 Transporter-associated domain RM11_RS01040 0f073ca14d177797cd9150ed7f6d7977 339 SMART SM01091 243 326 7.1E-26 T 22-04-2016 IPR005170 Transporter-associated domain RM11_RS00525 9d63d89b525d05a1e5c7f7cc7466c419 221 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 4 217 5.9E-56 T 22-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RM11_RS00525 9d63d89b525d05a1e5c7f7cc7466c419 221 PANTHER PTHR30070:SF1 1 221 1.1E-38 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00525 9d63d89b525d05a1e5c7f7cc7466c419 221 PIRSF PIRSF002764 1 221 6.9E-55 T 22-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RM11_RS00525 9d63d89b525d05a1e5c7f7cc7466c419 221 Pfam PF03379 CcmB protein 1 217 2.9E-57 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00525 9d63d89b525d05a1e5c7f7cc7466c419 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 25 46 2.1E-36 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00525 9d63d89b525d05a1e5c7f7cc7466c419 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 132 155 2.1E-36 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00525 9d63d89b525d05a1e5c7f7cc7466c419 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 51 68 2.1E-36 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00525 9d63d89b525d05a1e5c7f7cc7466c419 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 194 217 2.1E-36 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00525 9d63d89b525d05a1e5c7f7cc7466c419 221 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 101 119 2.1E-36 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS00525 9d63d89b525d05a1e5c7f7cc7466c419 221 PANTHER PTHR30070 1 221 1.1E-38 T 22-04-2016 RM11_RS00335 2f495a2759b34ebb067585280b3530d8 287 Pfam PF03641 Possible lysine decarboxylase 150 280 4.3E-30 T 22-04-2016 IPR031100 LOG family RM11_RS00335 2f495a2759b34ebb067585280b3530d8 287 Gene3D G3DSA:3.40.50.450 61 285 2.8E-60 T 22-04-2016 RM11_RS00335 2f495a2759b34ebb067585280b3530d8 287 PANTHER PTHR31223 116 284 1.2E-54 T 22-04-2016 RM11_RS00335 2f495a2759b34ebb067585280b3530d8 287 SUPERFAMILY SSF102405 49 281 1.37E-51 T 22-04-2016 RM11_RS00335 2f495a2759b34ebb067585280b3530d8 287 PANTHER PTHR31223:SF1 116 284 1.2E-54 T 22-04-2016 RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 PANTHER PTHR33516 1 74 4.1E-65 T 22-04-2016 RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 PANTHER PTHR33516 106 236 4.1E-65 T 22-04-2016 RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 160 171 1.94E-5 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 149 159 1.94E-5 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 189 201 1.94E-5 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 Gene3D G3DSA:1.10.10.10 2 67 3.5E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 SUPERFAMILY SSF46785 2 68 2.28E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 Hamap MF_00015 LexA repressor [lexA]. 1 236 31.167 T 22-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 Gene3D G3DSA:2.10.109.10 114 236 2.8E-36 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 SUPERFAMILY SSF51306 112 234 1.45E-29 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 PANTHER PTHR33516:SF2 1 74 4.1E-65 T 22-04-2016 RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 PANTHER PTHR33516:SF2 106 236 4.1E-65 T 22-04-2016 RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 Pfam PF00717 Peptidase S24-like 152 216 2.1E-11 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 Pfam PF01726 LexA DNA binding domain 2 63 2.7E-14 T 22-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 RM11_RS03105 b687e6ad03436405710514f0aecb3f59 236 TIGRFAM TIGR00498 lexA: repressor LexA 2 235 1.1E-49 T 22-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RM11_RS02720 9e915eaf099990a92aaeba18a8dae494 79 PANTHER PTHR34772 2 76 2.7E-33 T 22-04-2016 RM11_RS02720 9e915eaf099990a92aaeba18a8dae494 79 Gene3D G3DSA:2.30.30.100 3 76 1.0E-35 T 22-04-2016 RM11_RS02720 9e915eaf099990a92aaeba18a8dae494 79 PANTHER PTHR34772:SF1 2 76 2.7E-33 T 22-04-2016 RM11_RS02720 9e915eaf099990a92aaeba18a8dae494 79 SUPERFAMILY SSF50182 7 66 1.96E-24 T 22-04-2016 IPR010920 LSM domain RM11_RS02720 9e915eaf099990a92aaeba18a8dae494 79 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 66 28.973 T 22-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RM11_RS02720 9e915eaf099990a92aaeba18a8dae494 79 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 66 4.5E-32 T 22-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RM11_RS00855 7c12c8473c3f35485258e0f24751b88d 283 PANTHER PTHR32243 1 281 5.6E-114 T 22-04-2016 RM11_RS00855 7c12c8473c3f35485258e0f24751b88d 283 Gene3D G3DSA:1.10.3720.10 4 272 2.5E-55 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS00855 7c12c8473c3f35485258e0f24751b88d 283 SUPERFAMILY SSF161098 4 279 3.14E-60 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS00855 7c12c8473c3f35485258e0f24751b88d 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 278 2.0E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS00855 7c12c8473c3f35485258e0f24751b88d 283 PANTHER PTHR32243:SF31 1 281 5.6E-114 T 22-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 RM11_RS02460 01d3562aec0be41336ddd42fdb3cadd4 390 Pfam PF01551 Peptidase family M23 290 384 1.5E-25 T 22-04-2016 IPR016047 Peptidase M23 RM11_RS02460 01d3562aec0be41336ddd42fdb3cadd4 390 Gene3D G3DSA:2.70.70.10 262 389 4.8E-36 T 22-04-2016 RM11_RS02460 01d3562aec0be41336ddd42fdb3cadd4 390 Pfam PF01476 LysM domain 131 174 9.0E-13 T 22-04-2016 IPR018392 LysM domain RM11_RS02460 01d3562aec0be41336ddd42fdb3cadd4 390 Gene3D G3DSA:3.10.350.10 130 175 8.8E-17 T 22-04-2016 IPR018392 LysM domain RM11_RS02460 01d3562aec0be41336ddd42fdb3cadd4 390 SUPERFAMILY SSF51261 131 388 1.52E-49 T 22-04-2016 IPR011055 Duplicated hybrid motif RM11_RS02460 01d3562aec0be41336ddd42fdb3cadd4 390 SMART SM00257 130 174 1.1E-14 T 22-04-2016 IPR018392 LysM domain RM11_RS02460 01d3562aec0be41336ddd42fdb3cadd4 390 PANTHER PTHR21666 259 388 9.2E-34 T 22-04-2016 RM11_RS02255 7ce083b84bdd312a118526f4f5b1cb35 233 Pfam PF02666 Phosphatidylserine decarboxylase 48 217 2.0E-29 T 22-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RM11_RS02255 7ce083b84bdd312a118526f4f5b1cb35 233 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 14 219 4.0E-60 T 22-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RM11_RS02255 7ce083b84bdd312a118526f4f5b1cb35 233 PANTHER PTHR35809 2 224 1.1E-72 T 22-04-2016 RM11_RS02255 7ce083b84bdd312a118526f4f5b1cb35 233 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 13 221 37.113 T 22-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 SUPERFAMILY SSF158791 11 125 2.49E-21 T 22-04-2016 RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 TIGRFAM TIGR00400 mgtE: magnesium transporter 13 453 1.9E-104 T 22-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 SMART SM00116 201 249 1.4E-5 T 22-04-2016 IPR000644 CBS domain RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 PANTHER PTHR41394:SF2 5 453 2.8E-34 T 22-04-2016 RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 SMART SM00924 25 128 7.5E-21 T 22-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 Gene3D G3DSA:1.10.357.20 274 454 6.7E-58 T 22-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 Gene3D G3DSA:1.25.60.10 11 120 2.5E-18 T 22-04-2016 RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 PANTHER PTHR41394 5 453 2.8E-34 T 22-04-2016 RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 Pfam PF00571 CBS domain 128 187 0.0066 T 22-04-2016 IPR000644 CBS domain RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 Pfam PF00571 CBS domain 202 248 1.2E-7 T 22-04-2016 IPR000644 CBS domain RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 SUPERFAMILY SSF161093 275 453 1.83E-46 T 22-04-2016 RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 Pfam PF01769 Divalent cation transporter 316 447 2.1E-30 T 22-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 Pfam PF03448 MgtE intracellular N domain 26 125 8.8E-18 T 22-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 Gene3D G3DSA:3.10.580.10 121 255 2.2E-17 T 22-04-2016 RM11_RS00785 d3c53b11096478a5fdee20e63bb2a672 458 SUPERFAMILY SSF54631 127 269 4.06E-27 T 22-04-2016 RM11_RS00245 4ab683ff29ce39fa6e2ab2ca8f573a99 399 Pfam PF04055 Radical SAM superfamily 9 173 1.1E-16 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RM11_RS00245 4ab683ff29ce39fa6e2ab2ca8f573a99 399 SMART SM00729 4 224 1.3E-46 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RM11_RS00245 4ab683ff29ce39fa6e2ab2ca8f573a99 399 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 358 1.2E-82 T 22-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- RM11_RS00245 4ab683ff29ce39fa6e2ab2ca8f573a99 399 Gene3D G3DSA:3.80.30.20 7 205 6.8E-27 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RM11_RS00245 4ab683ff29ce39fa6e2ab2ca8f573a99 399 SUPERFAMILY SSF102114 2 397 7.06E-99 T 22-04-2016 RM11_RS00245 4ab683ff29ce39fa6e2ab2ca8f573a99 399 Pfam PF06969 HemN C-terminal domain 325 387 5.8E-9 T 22-04-2016 IPR010723 HemN, C-terminal RM11_RS03210 b4e8d136d52caf86992076f0aea62151 542 PANTHER PTHR10909 33 458 8.0E-24 T 22-04-2016 RM11_RS03210 b4e8d136d52caf86992076f0aea62151 542 SUPERFAMILY SSF47203 285 430 1.24E-13 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RM11_RS03210 b4e8d136d52caf86992076f0aea62151 542 PANTHER PTHR10909:SF289 33 458 8.0E-24 T 22-04-2016 RM11_RS03210 b4e8d136d52caf86992076f0aea62151 542 Gene3D G3DSA:1.20.140.10 277 432 1.7E-12 T 22-04-2016 RM11_RS03210 b4e8d136d52caf86992076f0aea62151 542 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 286 394 3.8E-7 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RM11_RS06435 697db0955c9e67cd81bab586f0b6c84c 117 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 79 23.742 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06435 697db0955c9e67cd81bab586f0b6c84c 117 Gene3D G3DSA:3.30.1320.10 3 81 1.2E-32 T 22-04-2016 IPR023803 Ribosomal protein S16 domain RM11_RS06435 697db0955c9e67cd81bab586f0b6c84c 117 Pfam PF00886 Ribosomal protein S16 9 69 3.0E-27 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS06435 697db0955c9e67cd81bab586f0b6c84c 117 SUPERFAMILY SSF54565 3 85 6.93E-32 T 22-04-2016 IPR023803 Ribosomal protein S16 domain RM11_RS06435 697db0955c9e67cd81bab586f0b6c84c 117 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 80 9.2E-31 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS01440 a2f9d56e4982bf43956b4215d31c72a5 475 PANTHER PTHR20852 31 475 7.8E-180 T 22-04-2016 RM11_RS01440 a2f9d56e4982bf43956b4215d31c72a5 475 Gene3D G3DSA:3.30.590.10 142 461 8.8E-98 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RM11_RS01440 a2f9d56e4982bf43956b4215d31c72a5 475 SUPERFAMILY SSF54368 30 137 6.28E-16 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS01440 a2f9d56e4982bf43956b4215d31c72a5 475 Gene3D G3DSA:3.10.20.70 31 141 7.3E-13 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS01440 a2f9d56e4982bf43956b4215d31c72a5 475 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 274 289 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS01440 a2f9d56e4982bf43956b4215d31c72a5 475 SMART SM01230 138 394 2.9E-115 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS01440 a2f9d56e4982bf43956b4215d31c72a5 475 Pfam PF00120 Glutamine synthetase, catalytic domain 140 469 3.3E-109 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RM11_RS01440 a2f9d56e4982bf43956b4215d31c72a5 475 SUPERFAMILY SSF55931 139 472 9.81E-112 T 22-04-2016 RM11_RS01440 a2f9d56e4982bf43956b4215d31c72a5 475 PANTHER PTHR20852:SF63 31 475 7.8E-180 T 22-04-2016 RM11_RS04055 b006726c59a76c38459dcf9aab05cd5a 132 Gene3D G3DSA:3.30.1490.10 76 132 4.4E-28 T 22-04-2016 RM11_RS04055 b006726c59a76c38459dcf9aab05cd5a 132 PANTHER PTHR11758 1 132 9.0E-52 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RM11_RS04055 b006726c59a76c38459dcf9aab05cd5a 132 Pfam PF00410 Ribosomal protein S8 5 132 1.9E-45 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RM11_RS04055 b006726c59a76c38459dcf9aab05cd5a 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RM11_RS04055 b006726c59a76c38459dcf9aab05cd5a 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 29.591 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RM11_RS04055 b006726c59a76c38459dcf9aab05cd5a 132 SUPERFAMILY SSF56047 2 132 6.41E-43 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RM11_RS04055 b006726c59a76c38459dcf9aab05cd5a 132 Gene3D G3DSA:3.30.1370.30 2 70 9.7E-23 T 22-04-2016 RM11_RS04050 559295a1476715bafad29972a53a174d 177 Gene3D G3DSA:3.90.930.12 83 177 7.2E-41 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 PANTHER PTHR11655 1 176 3.0E-83 T 22-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 Pfam PF00347 Ribosomal protein L6 91 163 1.6E-21 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 Pfam PF00347 Ribosomal protein L6 11 82 2.4E-15 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 5.5E-30 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 5.5E-30 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 5.5E-30 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 PIRSF PIRSF002162 1 177 8.5E-48 T 22-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.994 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 6.4E-73 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 PANTHER PTHR11655:SF14 1 176 3.0E-83 T 22-04-2016 RM11_RS04050 559295a1476715bafad29972a53a174d 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 22-04-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04050 559295a1476715bafad29972a53a174d 177 SUPERFAMILY SSF56053 1 82 1.51E-22 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 Gene3D G3DSA:3.90.930.12 2 82 6.1E-27 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04050 559295a1476715bafad29972a53a174d 177 SUPERFAMILY SSF56053 83 177 3.01E-37 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 ProSitePatterns PS00674 AAA-protein family signature. 295 313 - T 22-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 Pfam PF01434 Peptidase family M41 385 596 4.4E-78 T 22-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 SUPERFAMILY SSF52540 148 395 3.28E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 SUPERFAMILY SSF140990 407 603 1.7E-72 T 22-04-2016 RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 SMART SM00382 188 327 7.2E-26 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 Gene3D G3DSA:1.10.8.60 337 409 2.0E-29 T 22-04-2016 RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 Gene3D G3DSA:3.40.50.300 152 336 1.6E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 192 324 7.1E-46 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 610 37.422 T 22-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 PANTHER PTHR23076 11 601 0.0 T 22-04-2016 RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 Pfam PF06480 FtsH Extracellular 9 96 4.3E-13 T 22-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 RM11_RS05830 a0d24ea1dc2c6803601dce553fb550a9 717 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 104 597 2.2E-233 T 22-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RM11_RS00875 10e63e1a3b849a3d44bef92bc61e72ff 290 SUPERFAMILY SSF81345 9 266 2.75E-21 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS00875 10e63e1a3b849a3d44bef92bc61e72ff 290 PANTHER PTHR30477:SF3 6 279 5.5E-65 T 22-04-2016 RM11_RS00875 10e63e1a3b849a3d44bef92bc61e72ff 290 PANTHER PTHR30477 6 279 5.5E-65 T 22-04-2016 RM11_RS00875 10e63e1a3b849a3d44bef92bc61e72ff 290 Pfam PF00950 ABC 3 transport family 12 270 6.6E-53 T 22-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RM11_RS02925 a524e4579a6341ad99165e2c1bf21ec8 489 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 238 262 6.33E-51 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RM11_RS02925 a524e4579a6341ad99165e2c1bf21ec8 489 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 378 404 6.33E-51 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RM11_RS02925 a524e4579a6341ad99165e2c1bf21ec8 489 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 326 345 6.33E-51 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RM11_RS02925 a524e4579a6341ad99165e2c1bf21ec8 489 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 169 193 6.33E-51 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RM11_RS02925 a524e4579a6341ad99165e2c1bf21ec8 489 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 6.33E-51 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RM11_RS02925 a524e4579a6341ad99165e2c1bf21ec8 489 Pfam PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus 40 128 4.6E-6 T 22-04-2016 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692 RM11_RS02925 a524e4579a6341ad99165e2c1bf21ec8 489 PANTHER PTHR22773:SF40 1 486 8.1E-210 T 22-04-2016 RM11_RS02925 a524e4579a6341ad99165e2c1bf21ec8 489 Pfam PF00361 Proton-conducting membrane transporter 133 420 2.6E-91 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RM11_RS02925 a524e4579a6341ad99165e2c1bf21ec8 489 PANTHER PTHR22773 1 486 8.1E-210 T 22-04-2016 RM11_RS02925 a524e4579a6341ad99165e2c1bf21ec8 489 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 487 6.1E-189 T 22-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 RM11_RS00985 26ce98e56b72839e5ac93b812c24e624 542 PANTHER PTHR23513 1 427 3.4E-113 T 22-04-2016 RM11_RS00985 26ce98e56b72839e5ac93b812c24e624 542 PANTHER PTHR23513:SF7 1 427 3.4E-113 T 22-04-2016 RM11_RS00985 26ce98e56b72839e5ac93b812c24e624 542 Gene3D G3DSA:1.20.1250.20 18 198 2.3E-19 T 22-04-2016 RM11_RS00985 26ce98e56b72839e5ac93b812c24e624 542 Pfam PF05977 Transmembrane secretion effector 5 525 3.2E-199 T 22-04-2016 IPR010290 Transmembrane secretion effector RM11_RS00985 26ce98e56b72839e5ac93b812c24e624 542 Gene3D G3DSA:1.20.1250.20 220 397 1.6E-12 T 22-04-2016 RM11_RS00985 26ce98e56b72839e5ac93b812c24e624 542 SUPERFAMILY SSF103473 12 404 1.44E-49 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 PANTHER PTHR13789 8 407 1.4E-110 T 22-04-2016 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 302 315 - T 22-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 SUPERFAMILY SSF51905 275 392 3.46E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 SUPERFAMILY SSF51905 10 185 3.46E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 11 398 1.4E-119 T 22-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 Pfam PF01494 FAD binding domain 10 325 2.2E-26 T 22-04-2016 IPR002938 FAD-binding domain GO:0071949 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 Gene3D G3DSA:3.50.50.60 4 188 1.2E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 Gene3D G3DSA:3.50.50.60 286 325 1.2E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 11 33 2.4E-16 T 22-04-2016 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 288 303 2.4E-16 T 22-04-2016 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 164 179 2.4E-16 T 22-04-2016 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 303 319 2.4E-16 T 22-04-2016 RM11_RS06200 31757e4058886fa31bedc31cb0887044 412 PANTHER PTHR13789:SF5 8 407 1.4E-110 T 22-04-2016 RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 SUPERFAMILY SSF52374 20 182 2.19E-29 T 22-04-2016 RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 Pfam PF01687 Riboflavin kinase 191 314 8.0E-32 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 PANTHER PTHR22749:SF0 1 314 1.1E-100 T 22-04-2016 RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 SMART SM00904 190 315 1.9E-49 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 PIRSF PIRSF004491 7 320 1.5E-87 T 22-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 21 314 3.0E-73 T 22-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 Gene3D G3DSA:3.40.50.620 11 186 7.3E-53 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 PANTHER PTHR22749 1 314 1.1E-100 T 22-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 Gene3D G3DSA:2.40.30.30 187 318 7.9E-33 T 22-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 SUPERFAMILY SSF82114 182 320 4.8E-37 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RM11_RS05170 8356d6de97d1fffdde27374b98ece2b9 333 Pfam PF06574 FAD synthetase 16 164 8.6E-45 T 22-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 SUPERFAMILY SSF52540 27 185 1.15E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 PRINTS PR01100 Shikimate kinase family signature 51 64 1.69E-20 T 22-04-2016 RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 PRINTS PR01100 Shikimate kinase family signature 27 42 1.69E-20 T 22-04-2016 RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 PRINTS PR01100 Shikimate kinase family signature 79 87 1.69E-20 T 22-04-2016 RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 PRINTS PR01100 Shikimate kinase family signature 97 106 1.69E-20 T 22-04-2016 RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 PRINTS PR01100 Shikimate kinase family signature 118 135 1.69E-20 T 22-04-2016 RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 Gene3D G3DSA:3.40.50.300 24 192 7.5E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 PANTHER PTHR21087 22 190 5.4E-54 T 22-04-2016 RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 Pfam PF01202 Shikimate kinase 33 188 3.1E-47 T 22-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 PANTHER PTHR21087:SF0 22 190 5.4E-54 T 22-04-2016 RM11_RS06615 a224f7eb04c6d632650174457a675c4f 210 Hamap MF_00109 Shikimate kinase [aroK]. 24 189 26.816 T 22-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RM11_RS03755 0f1c5ceab3587766eacde22aeaf98ccd 223 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 219 41.498 T 22-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03755 0f1c5ceab3587766eacde22aeaf98ccd 223 SUPERFAMILY SSF52317 1 219 1.86E-69 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS03755 0f1c5ceab3587766eacde22aeaf98ccd 223 SMART SM01211 1 221 6.5E-114 T 22-04-2016 RM11_RS03755 0f1c5ceab3587766eacde22aeaf98ccd 223 PIRSF PIRSF001586 1 223 1.1E-83 T 22-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS03755 0f1c5ceab3587766eacde22aeaf98ccd 223 Gene3D G3DSA:3.40.50.880 1 220 4.6E-36 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RM11_RS03755 0f1c5ceab3587766eacde22aeaf98ccd 223 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 203 6.1E-39 T 22-04-2016 RM11_RS03755 0f1c5ceab3587766eacde22aeaf98ccd 223 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 219 2.3E-91 T 22-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RM11_RS06385 bb95d26a002a1155a01fceaa29b3384f 204 PRINTS PR00625 DnaJ domain signature 183 203 9.4E-11 T 22-04-2016 IPR001623 DnaJ domain RM11_RS06385 bb95d26a002a1155a01fceaa29b3384f 204 PRINTS PR00625 DnaJ domain signature 148 166 9.4E-11 T 22-04-2016 IPR001623 DnaJ domain RM11_RS06385 bb95d26a002a1155a01fceaa29b3384f 204 PRINTS PR00625 DnaJ domain signature 166 181 9.4E-11 T 22-04-2016 IPR001623 DnaJ domain RM11_RS06385 bb95d26a002a1155a01fceaa29b3384f 204 Pfam PF00226 DnaJ domain 147 200 2.4E-14 T 22-04-2016 IPR001623 DnaJ domain RM11_RS06385 bb95d26a002a1155a01fceaa29b3384f 204 PANTHER PTHR24078:SF255 94 198 2.3E-12 T 22-04-2016 RM11_RS06385 bb95d26a002a1155a01fceaa29b3384f 204 SMART SM00271 145 203 6.3E-15 T 22-04-2016 IPR001623 DnaJ domain RM11_RS06385 bb95d26a002a1155a01fceaa29b3384f 204 PANTHER PTHR24078 94 198 2.3E-12 T 22-04-2016 RM11_RS06385 bb95d26a002a1155a01fceaa29b3384f 204 Gene3D G3DSA:1.10.287.110 146 200 4.6E-14 T 22-04-2016 IPR001623 DnaJ domain RM11_RS06385 bb95d26a002a1155a01fceaa29b3384f 204 SUPERFAMILY SSF46565 127 201 7.72E-15 T 22-04-2016 IPR001623 DnaJ domain RM11_RS04535 4bd66a934bb025cba530c68129068ede 104 SUPERFAMILY SSF47413 7 60 9.01E-8 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RM11_RS04535 4bd66a934bb025cba530c68129068ede 104 Pfam PF01381 Helix-turn-helix 20 60 4.4E-6 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RM11_RS04535 4bd66a934bb025cba530c68129068ede 104 Gene3D G3DSA:1.10.260.40 8 60 8.7E-9 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RM11_RS04635 dc4e85b95dcbafff46400219d6bdcae9 126 Pfam PF08239 Bacterial SH3 domain 46 96 1.7E-12 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type RM11_RS04635 dc4e85b95dcbafff46400219d6bdcae9 126 SMART SM00287 38 98 0.0025 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type RM11_RS04635 dc4e85b95dcbafff46400219d6bdcae9 126 Gene3D G3DSA:2.30.30.40 70 98 5.8E-4 T 22-04-2016 RM11_RS03385 a5027470cb98ebcd55b99991ab29bfce 257 Gene3D G3DSA:3.40.50.10330 29 111 8.1E-18 T 22-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RM11_RS03385 a5027470cb98ebcd55b99991ab29bfce 257 PANTHER PTHR20275:SF7 11 257 1.0E-81 T 22-04-2016 RM11_RS03385 a5027470cb98ebcd55b99991ab29bfce 257 SUPERFAMILY SSF111331 22 243 8.63E-56 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain RM11_RS03385 a5027470cb98ebcd55b99991ab29bfce 257 Pfam PF01513 ATP-NAD kinase 35 183 3.4E-18 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RM11_RS03385 a5027470cb98ebcd55b99991ab29bfce 257 Gene3D G3DSA:2.60.200.30 112 230 1.2E-28 T 22-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RM11_RS03385 a5027470cb98ebcd55b99991ab29bfce 257 Hamap MF_00361 NAD kinase [nadK]. 6 257 20.476 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RM11_RS03385 a5027470cb98ebcd55b99991ab29bfce 257 PANTHER PTHR20275 11 257 1.0E-81 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RM11_RS06510 a7253aef1156aa0dac5a95e353cc584a 804 Pfam PF13779 Domain of unknown function (DUF4175) 28 801 1.7E-210 T 22-04-2016 IPR012683 Conserved hypothetical protein CHP02302, transmembrane RM11_RS06510 a7253aef1156aa0dac5a95e353cc584a 804 TIGRFAM TIGR02302 aProt_lowcomp: TIGR02302 family protein 23 641 3.2E-171 T 22-04-2016 IPR012683 Conserved hypothetical protein CHP02302, transmembrane RM11_RS00200 601185d2f40c3dc2182bc7f6a94f02d4 289 SUPERFAMILY SSF53850 58 286 6.61E-38 T 22-04-2016 RM11_RS00200 601185d2f40c3dc2182bc7f6a94f02d4 289 PANTHER PTHR18966:SF216 58 284 7.9E-13 T 22-04-2016 RM11_RS00200 601185d2f40c3dc2182bc7f6a94f02d4 289 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 59 284 2.8E-34 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RM11_RS00200 601185d2f40c3dc2182bc7f6a94f02d4 289 Gene3D G3DSA:3.40.190.10 58 145 2.8E-26 T 22-04-2016 RM11_RS00200 601185d2f40c3dc2182bc7f6a94f02d4 289 Gene3D G3DSA:3.40.190.10 246 286 2.8E-26 T 22-04-2016 RM11_RS00200 601185d2f40c3dc2182bc7f6a94f02d4 289 Gene3D G3DSA:3.40.190.10 175 239 1.7E-5 T 22-04-2016 RM11_RS00200 601185d2f40c3dc2182bc7f6a94f02d4 289 SMART SM00062 57 287 4.2E-20 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RM11_RS00200 601185d2f40c3dc2182bc7f6a94f02d4 289 PANTHER PTHR18966 58 284 7.9E-13 T 22-04-2016 RM11_RS04660 9ef72410847305f7f8cd2f9d09ea6f3a 343 Gene3D G3DSA:3.40.50.300 46 213 1.6E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04660 9ef72410847305f7f8cd2f9d09ea6f3a 343 SUPERFAMILY SSF52540 37 322 3.08E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04660 9ef72410847305f7f8cd2f9d09ea6f3a 343 Gene3D G3DSA:1.10.8.300 228 341 2.1E-31 T 22-04-2016 RM11_RS04660 9ef72410847305f7f8cd2f9d09ea6f3a 343 PANTHER PTHR11603:SF156 16 342 3.0E-116 T 22-04-2016 RM11_RS04660 9ef72410847305f7f8cd2f9d09ea6f3a 343 PIRSF PIRSF002849 2 343 5.8E-115 T 22-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted RM11_RS04660 9ef72410847305f7f8cd2f9d09ea6f3a 343 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 64 197 5.3E-59 T 22-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RM11_RS04660 9ef72410847305f7f8cd2f9d09ea6f3a 343 PANTHER PTHR11603 16 342 3.0E-116 T 22-04-2016 RM11_RS03335 b8108fd2f8a93d1f330264dc328164d1 154 PANTHER PTHR11545 1 142 4.1E-68 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RM11_RS03335 b8108fd2f8a93d1f330264dc328164d1 154 SUPERFAMILY SSF52161 1 140 7.33E-55 T 22-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RM11_RS03335 b8108fd2f8a93d1f330264dc328164d1 154 Gene3D G3DSA:3.90.1180.10 3 142 1.7E-60 T 22-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RM11_RS03335 b8108fd2f8a93d1f330264dc328164d1 154 PIRSF PIRSF002181 1 154 3.5E-50 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RM11_RS03335 b8108fd2f8a93d1f330264dc328164d1 154 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 2.0E-59 T 22-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 RM11_RS03335 b8108fd2f8a93d1f330264dc328164d1 154 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 142 27.297 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RM11_RS03335 b8108fd2f8a93d1f330264dc328164d1 154 Pfam PF00572 Ribosomal protein L13 14 139 2.1E-52 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 Gene3D G3DSA:1.20.120.640 357 429 8.4E-7 T 22-04-2016 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 PANTHER PTHR10890 328 487 1.9E-153 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 PANTHER PTHR10890 248 311 1.9E-153 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 PANTHER PTHR10890 4 232 1.9E-153 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 17 357 3.3E-94 T 22-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 4 494 35.043 T 22-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 SUPERFAMILY SSF47323 372 491 8.76E-23 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 SUPERFAMILY SSF52374 4 357 2.08E-76 T 22-04-2016 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 4 487 1.5E-120 T 22-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 Gene3D G3DSA:3.40.50.620 21 351 2.0E-85 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 251 272 9.0E-19 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 27 38 9.0E-19 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 65 74 9.0E-19 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RM11_RS02240 a1f1ae4c42763668c794f6c46c32d237 502 SMART SM00840 385 433 0.0034 T 22-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RM11_RS06725 fe49d76625fea515badaab570ea8529b 283 Gene3D G3DSA:3.10.310.10 120 261 1.9E-45 T 22-04-2016 RM11_RS06725 fe49d76625fea515badaab570ea8529b 283 PANTHER PTHR31689 5 277 4.2E-83 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06725 fe49d76625fea515badaab570ea8529b 283 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 273 30.908 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06725 fe49d76625fea515badaab570ea8529b 283 Gene3D G3DSA:3.10.310.10 4 119 2.5E-32 T 22-04-2016 RM11_RS06725 fe49d76625fea515badaab570ea8529b 283 SUPERFAMILY SSF54506 138 271 3.14E-42 T 22-04-2016 RM11_RS06725 fe49d76625fea515badaab570ea8529b 283 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 65 79 - T 22-04-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06725 fe49d76625fea515badaab570ea8529b 283 SUPERFAMILY SSF54506 4 128 1.17E-33 T 22-04-2016 RM11_RS06725 fe49d76625fea515badaab570ea8529b 283 Pfam PF01678 Diaminopimelate epimerase 151 264 5.3E-22 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06725 fe49d76625fea515badaab570ea8529b 283 Pfam PF01678 Diaminopimelate epimerase 5 122 3.6E-20 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06725 fe49d76625fea515badaab570ea8529b 283 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 5 270 1.7E-67 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PANTHER PTHR30477 9 305 2.8E-86 T 22-04-2016 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 Gene3D G3DSA:3.40.50.1980 185 305 6.6E-46 T 22-04-2016 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00691 Adhesin B signature 192 209 9.3E-36 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00691 Adhesin B signature 263 281 9.3E-36 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00691 Adhesin B signature 284 302 9.3E-36 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00691 Adhesin B signature 73 92 9.3E-36 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00691 Adhesin B signature 134 153 9.3E-36 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00691 Adhesin B signature 54 72 9.3E-36 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00691 Adhesin B signature 241 258 9.3E-36 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00691 Adhesin B signature 29 50 9.3E-36 T 22-04-2016 IPR006129 Adhesin B GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 Gene3D G3DSA:3.40.50.1980 29 184 8.1E-49 T 22-04-2016 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00690 Adhesin family signature 271 290 7.3E-34 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00690 Adhesin family signature 29 47 7.3E-34 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00690 Adhesin family signature 192 213 7.3E-34 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00690 Adhesin family signature 245 263 7.3E-34 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00690 Adhesin family signature 60 73 7.3E-34 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PRINTS PR00690 Adhesin family signature 73 90 7.3E-34 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 Pfam PF01297 Zinc-uptake complex component A periplasmic 32 302 4.0E-79 T 22-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 PANTHER PTHR30477:SF16 9 305 2.8E-86 T 22-04-2016 RM11_RS00870 907108bd220994902295b17e1a1a13be 308 SUPERFAMILY SSF53807 24 305 6.87E-86 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 SUPERFAMILY SSF82866 831 1024 1.12E-41 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 SUPERFAMILY SSF82714 200 276 6.28E-13 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 SUPERFAMILY SSF82866 307 501 2.35E-45 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 SUPERFAMILY SSF82693 279 333 6.8E-16 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 SUPERFAMILY SSF82693 153 197 6.8E-16 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 Gene3D G3DSA:3.30.70.1430 56 157 3.9E-26 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 Gene3D G3DSA:1.20.1640.10 298 504 2.7E-55 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 SUPERFAMILY SSF82693 672 717 1.2E-9 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 SUPERFAMILY SSF82693 804 846 1.2E-9 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 Gene3D G3DSA:3.30.70.1430 573 664 1.0E-9 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 SUPERFAMILY SSF82714 718 800 1.03E-14 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 PRINTS PR00702 Acriflavin resistance protein family signature 341 364 1.1E-66 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 PRINTS PR00702 Acriflavin resistance protein family signature 368 389 1.1E-66 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 PRINTS PR00702 Acriflavin resistance protein family signature 26 50 1.1E-66 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 PRINTS PR00702 Acriflavin resistance protein family signature 556 573 1.1E-66 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 PRINTS PR00702 Acriflavin resistance protein family signature 474 497 1.1E-66 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 PRINTS PR00702 Acriflavin resistance protein family signature 449 472 1.1E-66 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 PRINTS PR00702 Acriflavin resistance protein family signature 396 420 1.1E-66 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 PRINTS PR00702 Acriflavin resistance protein family signature 623 637 1.1E-66 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 PRINTS PR00702 Acriflavin resistance protein family signature 54 72 1.1E-66 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 PANTHER PTHR32063 17 1040 0.0 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 SUPERFAMILY SSF82693 569 665 3.92E-15 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 Pfam PF00873 AcrB/AcrD/AcrF family 19 1022 4.0E-253 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 Gene3D G3DSA:3.30.2090.10 717 801 5.9E-15 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 Gene3D G3DSA:3.30.2090.10 199 276 1.3E-13 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 SUPERFAMILY SSF82693 56 149 4.19E-22 T 22-04-2016 RM11_RS00635 6e07ae0cfcf1532df3734a8b7a4e54c1 1041 Gene3D G3DSA:1.10.3850.10 810 1024 3.5E-53 T 22-04-2016 RM11_RS02455 ed6b0f6a7ea289efada2e9ac323a8473 219 PANTHER PTHR11579:SF0 2 213 8.0E-30 T 22-04-2016 RM11_RS02455 ed6b0f6a7ea289efada2e9ac323a8473 219 PANTHER PTHR11579 2 213 8.0E-30 T 22-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RM11_RS02455 ed6b0f6a7ea289efada2e9ac323a8473 219 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 16 212 4.5E-30 T 22-04-2016 RM11_RS02455 ed6b0f6a7ea289efada2e9ac323a8473 219 SUPERFAMILY SSF53335 20 214 2.76E-34 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS02455 ed6b0f6a7ea289efada2e9ac323a8473 219 Gene3D G3DSA:3.40.50.150 21 215 2.1E-38 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01925 83d8738d02e4614b3a8821e82b84c707 218 Gene3D G3DSA:3.40.30.10 146 212 5.8E-8 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS01925 83d8738d02e4614b3a8821e82b84c707 218 Gene3D G3DSA:3.40.30.10 38 138 3.6E-30 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS01925 83d8738d02e4614b3a8821e82b84c707 218 PANTHER PTHR13887 10 218 2.1E-32 T 22-04-2016 RM11_RS01925 83d8738d02e4614b3a8821e82b84c707 218 Pfam PF13462 Thioredoxin 50 213 3.5E-42 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS01925 83d8738d02e4614b3a8821e82b84c707 218 SUPERFAMILY SSF52833 44 217 1.37E-39 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS00770 fc64c5f3360b075d7dc170af953747eb 114 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 9 83 1.4E-21 T 22-04-2016 IPR003746 Protein of unknown function DUF167 RM11_RS00770 fc64c5f3360b075d7dc170af953747eb 114 SMART SM01152 6 87 1.3E-30 T 22-04-2016 IPR003746 Protein of unknown function DUF167 RM11_RS00770 fc64c5f3360b075d7dc170af953747eb 114 Hamap MF_00634 UPF0235 protein YggU [yggU]. 6 98 17.424 T 22-04-2016 IPR003746 Protein of unknown function DUF167 RM11_RS00770 fc64c5f3360b075d7dc170af953747eb 114 SUPERFAMILY SSF69786 2 105 4.71E-25 T 22-04-2016 IPR003746 Protein of unknown function DUF167 RM11_RS00770 fc64c5f3360b075d7dc170af953747eb 114 Gene3D G3DSA:3.30.1200.10 2 100 2.1E-22 T 22-04-2016 IPR003746 Protein of unknown function DUF167 RM11_RS05175 546adca5591a97933fb19db029c3efe9 281 Pfam PF13344 Haloacid dehalogenase-like hydrolase 17 112 5.5E-17 T 22-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RM11_RS05175 546adca5591a97933fb19db029c3efe9 281 Gene3D G3DSA:3.40.50.1000 189 252 8.9E-32 T 22-04-2016 IPR023214 HAD-like domain RM11_RS05175 546adca5591a97933fb19db029c3efe9 281 Gene3D G3DSA:3.40.50.1000 4 82 8.9E-32 T 22-04-2016 IPR023214 HAD-like domain RM11_RS05175 546adca5591a97933fb19db029c3efe9 281 PANTHER PTHR19288 4 281 4.8E-59 T 22-04-2016 RM11_RS05175 546adca5591a97933fb19db029c3efe9 281 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 17 245 1.9E-41 T 22-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RM11_RS05175 546adca5591a97933fb19db029c3efe9 281 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 7 243 6.0E-46 T 22-04-2016 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 RM11_RS05175 546adca5591a97933fb19db029c3efe9 281 PANTHER PTHR19288:SF3 4 281 4.8E-59 T 22-04-2016 RM11_RS05175 546adca5591a97933fb19db029c3efe9 281 Pfam PF13242 HAD-hyrolase-like 191 250 6.1E-10 T 22-04-2016 RM11_RS05175 546adca5591a97933fb19db029c3efe9 281 SUPERFAMILY SSF56784 14 253 3.8E-47 T 22-04-2016 IPR023214 HAD-like domain RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 Gene3D G3DSA:3.90.550.10 2 191 3.0E-48 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 199 351 8.7E-58 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 PANTHER PTHR32125 198 349 6.3E-44 T 22-04-2016 RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1 189 2.5E-46 T 22-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 Pfam PF02542 YgbB family 198 351 3.5E-58 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 198 353 31.432 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 Gene3D G3DSA:3.30.1330.50 197 352 1.7E-64 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 232 247 - T 22-04-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 SUPERFAMILY SSF69765 198 353 3.27E-60 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 SUPERFAMILY SSF53448 2 189 2.41E-37 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS02555 fc3c72ba023d162ff211915edcbea87d 359 Hamap MF_01520 Bifunctional enzyme IspD/IspF [ispDF]. 1 354 34.395 T 22-04-2016 IPR026596 Bifunctional enzyme IspD/IspF KEGG: 00900+4.6.1.12+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056|UniPathway: UPA00056 RM11_RS05630 4356c56967143a0d879af4e159184a05 202 PANTHER PTHR23407:SF1 6 200 9.7E-35 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RM11_RS05630 4356c56967143a0d879af4e159184a05 202 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 16 196 1.8E-27 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RM11_RS05630 4356c56967143a0d879af4e159184a05 202 PANTHER PTHR23407 6 200 9.7E-35 T 22-04-2016 RM11_RS05630 4356c56967143a0d879af4e159184a05 202 SUPERFAMILY SSF100950 15 200 2.37E-41 T 22-04-2016 RM11_RS05630 4356c56967143a0d879af4e159184a05 202 PIRSF PIRSF006806 11 199 1.5E-29 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RM11_RS05630 4356c56967143a0d879af4e159184a05 202 Gene3D G3DSA:3.40.50.10420 15 201 2.2E-43 T 22-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RM11_RS05630 4356c56967143a0d879af4e159184a05 202 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 15 196 5.8E-40 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RM11_RS02305 98ec4e24f79c77d5d0fdc696d437ee26 136 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 21.212 T 22-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS02305 98ec4e24f79c77d5d0fdc696d437ee26 136 PANTHER PTHR21011:SF1 1 135 6.7E-27 T 22-04-2016 RM11_RS02305 98ec4e24f79c77d5d0fdc696d437ee26 136 Gene3D G3DSA:3.30.70.60 1 103 4.8E-38 T 22-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RM11_RS02305 98ec4e24f79c77d5d0fdc696d437ee26 136 Pfam PF01250 Ribosomal protein S6 4 92 4.0E-29 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS02305 98ec4e24f79c77d5d0fdc696d437ee26 136 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 5.0E-25 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS02305 98ec4e24f79c77d5d0fdc696d437ee26 136 PANTHER PTHR21011 1 135 6.7E-27 T 22-04-2016 RM11_RS02305 98ec4e24f79c77d5d0fdc696d437ee26 136 SUPERFAMILY SSF54995 1 103 1.57E-34 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RM11_RS04295 e76b5277603400eab2bffd92e9339c8e 295 PANTHER PTHR11088:SF25 1 287 4.6E-78 T 22-04-2016 RM11_RS04295 e76b5277603400eab2bffd92e9339c8e 295 SUPERFAMILY SSF52540 188 264 5.94E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04295 e76b5277603400eab2bffd92e9339c8e 295 SUPERFAMILY SSF52540 3 47 5.94E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04295 e76b5277603400eab2bffd92e9339c8e 295 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 6 294 25.71 T 22-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RM11_RS04295 e76b5277603400eab2bffd92e9339c8e 295 Gene3D G3DSA:3.40.50.300 3 171 6.0E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04295 e76b5277603400eab2bffd92e9339c8e 295 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 8 286 9.7E-73 T 22-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RM11_RS04295 e76b5277603400eab2bffd92e9339c8e 295 Pfam PF01715 IPP transferase 39 282 4.1E-65 T 22-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RM11_RS04295 e76b5277603400eab2bffd92e9339c8e 295 SUPERFAMILY SSF52540 6 148 9.31E-21 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04295 e76b5277603400eab2bffd92e9339c8e 295 PANTHER PTHR11088 1 287 4.6E-78 T 22-04-2016 RM11_RS04295 e76b5277603400eab2bffd92e9339c8e 295 Gene3D G3DSA:1.10.287.890 200 281 1.6E-29 T 22-04-2016 RM11_RS02025 a07664893482ec15860772a1e1e6f843 159 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 17 155 28.293 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RM11_RS02025 a07664893482ec15860772a1e1e6f843 159 Gene3D G3DSA:2.40.50.140 41 139 3.0E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS02025 a07664893482ec15860772a1e1e6f843 159 SUPERFAMILY SSF82093 46 150 4.84E-34 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RM11_RS02025 a07664893482ec15860772a1e1e6f843 159 Pfam PF03100 CcmE 20 144 2.6E-37 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RM11_RS02025 a07664893482ec15860772a1e1e6f843 159 PANTHER PTHR34128 18 155 1.1E-39 T 22-04-2016 RM11_RS02025 a07664893482ec15860772a1e1e6f843 159 PANTHER PTHR34128:SF1 18 155 1.1E-39 T 22-04-2016 RM11_RS03805 f6dd13b30bf8a7bbb8fdc4edd9b9b6f5 79 Pfam PF10276 Zinc-finger domain 24 58 8.3E-11 T 22-04-2016 IPR019401 Zinc finger, CHCC-type RM11_RS03805 f6dd13b30bf8a7bbb8fdc4edd9b9b6f5 79 Gene3D G3DSA:2.60.260.40 1 78 1.7E-30 T 22-04-2016 IPR019401 Zinc finger, CHCC-type RM11_RS01710 1e7b45cbdc72fe47b15793645a00e5cd 292 PANTHER PTHR30589 8 275 1.7E-69 T 22-04-2016 RM11_RS01710 1e7b45cbdc72fe47b15793645a00e5cd 292 PANTHER PTHR30589:SF0 8 275 1.7E-69 T 22-04-2016 RM11_RS01710 1e7b45cbdc72fe47b15793645a00e5cd 292 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 16 282 1.9E-64 T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RM11_RS01710 1e7b45cbdc72fe47b15793645a00e5cd 292 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 14 281 17.585 T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RM11_RS01710 1e7b45cbdc72fe47b15793645a00e5cd 292 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 17 275 1.7E-68 T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 Pfam PF07687 Peptidase dimerisation domain 182 287 1.3E-20 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 9 387 7.7E-122 T 22-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 Gene3D G3DSA:3.30.70.360 195 288 9.1E-25 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 69 78 - T 22-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 PANTHER PTHR11014 8 389 5.5E-71 T 22-04-2016 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 Gene3D G3DSA:3.40.630.10 332 388 1.0E-69 T 22-04-2016 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 Gene3D G3DSA:3.40.630.10 6 194 1.0E-69 T 22-04-2016 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 Pfam PF01546 Peptidase family M20/M25/M40 70 386 4.9E-42 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 SUPERFAMILY SSF55031 186 288 9.29E-23 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 5 390 46.953 T 22-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 105 142 - T 22-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 SUPERFAMILY SSF53187 308 388 6.81E-60 T 22-04-2016 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 SUPERFAMILY SSF53187 6 185 6.81E-60 T 22-04-2016 RM11_RS00240 1e6bad4751e7324d5ba9de8185a0fdc5 390 PANTHER PTHR11014:SF106 8 389 5.5E-71 T 22-04-2016 RM11_RS01265 4aa6ca9975779af5a9e0990663290717 343 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 4 333 32.616 T 22-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RM11_RS01265 4aa6ca9975779af5a9e0990663290717 343 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 18 316 5.9E-55 T 22-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RM11_RS01265 4aa6ca9975779af5a9e0990663290717 343 PANTHER PTHR30160 9 339 2.6E-58 T 22-04-2016 RM11_RS01265 4aa6ca9975779af5a9e0990663290717 343 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 17 326 2.1E-80 T 22-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RM11_RS01265 4aa6ca9975779af5a9e0990663290717 343 SUPERFAMILY SSF52540 45 149 7.97E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01265 4aa6ca9975779af5a9e0990663290717 343 PANTHER PTHR30160:SF13 9 339 2.6E-58 T 22-04-2016 RM11_RS04955 50ed3670db8ef42c140c86e08d6ed669 364 Pfam PF00529 HlyD membrane-fusion protein of T1SS 32 353 1.9E-8 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RM11_RS04955 50ed3670db8ef42c140c86e08d6ed669 364 PANTHER PTHR30386:SF0 3 355 5.4E-85 T 22-04-2016 RM11_RS04955 50ed3670db8ef42c140c86e08d6ed669 364 SUPERFAMILY SSF111369 131 184 7.72E-10 T 22-04-2016 RM11_RS04955 50ed3670db8ef42c140c86e08d6ed669 364 SUPERFAMILY SSF111369 220 279 7.72E-10 T 22-04-2016 RM11_RS04955 50ed3670db8ef42c140c86e08d6ed669 364 SUPERFAMILY SSF111369 58 142 7.06E-8 T 22-04-2016 RM11_RS04955 50ed3670db8ef42c140c86e08d6ed669 364 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 302 6.0E-16 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RM11_RS04955 50ed3670db8ef42c140c86e08d6ed669 364 PANTHER PTHR30386 3 355 5.4E-85 T 22-04-2016 RM11_RS04955 50ed3670db8ef42c140c86e08d6ed669 364 Gene3D G3DSA:2.40.50.100 60 92 6.6E-17 T 22-04-2016 RM11_RS04955 50ed3670db8ef42c140c86e08d6ed669 364 Gene3D G3DSA:2.40.50.100 223 256 6.6E-17 T 22-04-2016 RM11_RS02960 32022c3cae3886562073c413a9364bd4 96 Pfam PF03937 Flavinator of succinate dehydrogenase 15 86 7.9E-20 T 22-04-2016 IPR005631 Flavinator of succinate dehydrogenase RM11_RS02960 32022c3cae3886562073c413a9364bd4 96 SUPERFAMILY SSF109910 10 88 9.15E-22 T 22-04-2016 IPR005631 Flavinator of succinate dehydrogenase RM11_RS02960 32022c3cae3886562073c413a9364bd4 96 Gene3D G3DSA:1.10.150.250 10 89 1.9E-24 T 22-04-2016 IPR005631 Flavinator of succinate dehydrogenase RM11_RS02960 32022c3cae3886562073c413a9364bd4 96 PANTHER PTHR12469 7 89 5.5E-16 T 22-04-2016 RM11_RS04430 713dbfd81f0f3932f6f6d7b2da30b651 385 PANTHER PTHR30474:SF2 1 373 1.2E-97 T 22-04-2016 RM11_RS04430 713dbfd81f0f3932f6f6d7b2da30b651 385 Pfam PF01098 Cell cycle protein 21 363 9.9E-72 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RM11_RS04430 713dbfd81f0f3932f6f6d7b2da30b651 385 PANTHER PTHR30474 1 373 1.2E-97 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RM11_RS03355 b0926f48ea55ee9c85491659419713ee 915 SMART SM00869 642 902 2.2E-16 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS03355 b0926f48ea55ee9c85491659419713ee 915 SUPERFAMILY SSF103515 656 915 3.27E-24 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS03355 b0926f48ea55ee9c85491659419713ee 915 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 691 915 3.0E-17 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RM11_RS03355 b0926f48ea55ee9c85491659419713ee 915 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 450 545 4.8E-5 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RM11_RS03355 b0926f48ea55ee9c85491659419713ee 915 SUPERFAMILY SSF51126 78 571 1.1E-31 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor RM11_RS03355 b0926f48ea55ee9c85491659419713ee 915 Gene3D G3DSA:2.40.128.130 609 915 1.8E-27 T 22-04-2016 IPR005546 Autotransporter beta-domain RM11_RS05195 e05385a977ca1e0963b1f5ab46627387 104 Pfam PF04956 TrbC/VIRB2 family 3 100 5.2E-25 T 22-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RM11_RS06395 bf68e8233c7089a35fe0308b3d963f1d 632 Gene3D G3DSA:3.40.50.410 420 591 9.8E-7 T 22-04-2016 IPR002035 von Willebrand factor, type A RM11_RS06395 bf68e8233c7089a35fe0308b3d963f1d 632 Pfam PF11775 Cobalamin biosynthesis protein CobT VWA domain 405 623 1.4E-102 T 22-04-2016 IPR025861 Cobalamin biosynthesis protein CobT VWA domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RM11_RS06395 bf68e8233c7089a35fe0308b3d963f1d 632 Pfam PF06213 Cobalamin biosynthesis protein CobT 23 292 3.3E-80 T 22-04-2016 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RM11_RS06395 bf68e8233c7089a35fe0308b3d963f1d 632 SUPERFAMILY SSF53300 420 613 1.78E-15 T 22-04-2016 IPR002035 von Willebrand factor, type A RM11_RS06395 bf68e8233c7089a35fe0308b3d963f1d 632 SMART SM00327 416 621 4.2E-6 T 22-04-2016 IPR002035 von Willebrand factor, type A RM11_RS06395 bf68e8233c7089a35fe0308b3d963f1d 632 TIGRFAM TIGR01651 CobT: cobaltochelatase, CobT subunit 24 623 2.7E-264 T 22-04-2016 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RM11_RS06395 bf68e8233c7089a35fe0308b3d963f1d 632 PIRSF PIRSF031715 6 631 8.9E-281 T 22-04-2016 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RM11_RS05975 e578be7da421a80013788456b2d76614 340 SUPERFAMILY SSF55347 153 315 3.74E-69 T 22-04-2016 RM11_RS05975 e578be7da421a80013788456b2d76614 340 Gene3D G3DSA:3.30.360.10 162 316 5.8E-73 T 22-04-2016 RM11_RS05975 e578be7da421a80013788456b2d76614 340 Gene3D G3DSA:3.40.50.720 1 161 1.0E-70 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS05975 e578be7da421a80013788456b2d76614 340 PIRSF PIRSF000149 1 335 3.3E-136 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS05975 e578be7da421a80013788456b2d76614 340 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 158 314 1.3E-63 T 22-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS05975 e578be7da421a80013788456b2d76614 340 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 153 3.0E-55 T 22-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS05975 e578be7da421a80013788456b2d76614 340 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 326 2.6E-129 T 22-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 RM11_RS05975 e578be7da421a80013788456b2d76614 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 1.0E-41 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS05975 e578be7da421a80013788456b2d76614 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 1.0E-41 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS05975 e578be7da421a80013788456b2d76614 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 1.0E-41 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS05975 e578be7da421a80013788456b2d76614 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 1.0E-41 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS05975 e578be7da421a80013788456b2d76614 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 1.0E-41 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS05975 e578be7da421a80013788456b2d76614 340 SUPERFAMILY SSF51735 1 177 5.35E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS05975 e578be7da421a80013788456b2d76614 340 PANTHER PTHR10836:SF50 1 339 2.9E-201 T 22-04-2016 RM11_RS05975 e578be7da421a80013788456b2d76614 340 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 151 158 - T 22-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS05975 e578be7da421a80013788456b2d76614 340 PANTHER PTHR10836 1 339 2.9E-201 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS05975 e578be7da421a80013788456b2d76614 340 SMART SM00846 3 153 1.4E-88 T 22-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RM11_RS01725 9bd6fa47ef35354f6c14231a8fc34aa7 166 Pfam PF10722 Putative bacterial sensory transduction regulator 15 122 2.5E-19 T 22-04-2016 IPR019660 Putative sensory transduction regulator YbjN RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 SUPERFAMILY SSF51419 26 284 3.05E-75 T 22-04-2016 IPR029066 PLP-binding barrel RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 38 282 6.7E-58 T 22-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 412 1.3E-137 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PANTHER PTHR11482 1 423 8.8E-156 T 22-04-2016 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 287 392 3.0E-14 T 22-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 373 386 8.77E-26 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 8.77E-26 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 272 291 8.77E-26 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 8.77E-26 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 8.77E-26 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 Gene3D G3DSA:2.40.37.10 269 420 2.2E-44 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 300 318 4.33E-25 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 4.33E-25 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 383 405 4.33E-25 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 4.33E-25 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 Gene3D G3DSA:3.20.20.10 36 268 2.5E-74 T 22-04-2016 IPR029066 PLP-binding barrel RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 22-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 SUPERFAMILY SSF50621 256 419 2.51E-49 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 416 37.869 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 PANTHER PTHR11482:SF5 1 423 8.8E-156 T 22-04-2016 RM11_RS06515 bff162a6a2ef0f84c99e7301c283d029 424 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 225 241 - T 22-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 RM11_RS01305 1e3a380020c4baec8e789cbffbba0eef 220 SUPERFAMILY SSF53955 7 158 1.18E-48 T 22-04-2016 IPR023346 Lysozyme-like domain RM11_RS01305 1e3a380020c4baec8e789cbffbba0eef 220 Pfam PF00959 Phage lysozyme 29 139 4.1E-19 T 22-04-2016 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 RM11_RS01305 1e3a380020c4baec8e789cbffbba0eef 220 PANTHER PTHR38107 1 151 2.0E-40 T 22-04-2016 RM11_RS01305 1e3a380020c4baec8e789cbffbba0eef 220 PANTHER PTHR38107:SF2 1 151 2.0E-40 T 22-04-2016 RM11_RS01305 1e3a380020c4baec8e789cbffbba0eef 220 Gene3D G3DSA:1.10.530.40 3 152 8.8E-56 T 22-04-2016 IPR023347 Lysozyme domain GO:0003796 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 Pfam PF03143 Elongation factor Tu C-terminal domain 295 389 7.9E-32 T 22-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 146 1.4E-16 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 PRINTS PR00315 GTP-binding elongation factor signature 73 83 3.3E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 PRINTS PR00315 GTP-binding elongation factor signature 53 61 3.3E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 PRINTS PR00315 GTP-binding elongation factor signature 126 135 3.3E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 PRINTS PR00315 GTP-binding elongation factor signature 89 100 3.3E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.3E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 Pfam PF00009 Elongation factor Tu GTP binding domain 10 198 3.8E-57 T 22-04-2016 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 PANTHER PTHR23115:SF112 1 390 1.4E-247 T 22-04-2016 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 391 59.796 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 PANTHER PTHR23115 1 390 1.4E-247 T 22-04-2016 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 391 2.9E-221 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 Gene3D G3DSA:2.40.30.10 209 295 1.5E-36 T 22-04-2016 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 Gene3D G3DSA:3.40.50.300 4 208 1.0E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 SUPERFAMILY SSF52540 6 216 1.81E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 SUPERFAMILY SSF50465 299 391 2.13E-34 T 22-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 Pfam PF03144 Elongation factor Tu domain 2 222 290 2.4E-16 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 SUPERFAMILY SSF50447 200 298 5.3E-30 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RM11_RS03610 e783bbcb54dd2348bfa2ba5abf1978fa 391 Gene3D G3DSA:2.40.30.10 297 390 3.6E-44 T 22-04-2016 RM11_RS02600 09121622e7f8d45c4a4c5da9559b4525 92 Gene3D G3DSA:4.10.520.10 1 91 4.4E-37 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RM11_RS02600 09121622e7f8d45c4a4c5da9559b4525 92 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.5E-33 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS02600 09121622e7f8d45c4a4c5da9559b4525 92 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 4.6E-15 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS02600 09121622e7f8d45c4a4c5da9559b4525 92 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 4.6E-15 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS02600 09121622e7f8d45c4a4c5da9559b4525 92 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 4.6E-15 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS02600 09121622e7f8d45c4a4c5da9559b4525 92 SUPERFAMILY SSF47729 1 90 9.86E-32 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RM11_RS02600 09121622e7f8d45c4a4c5da9559b4525 92 SMART SM00411 1 90 1.0E-43 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS02600 09121622e7f8d45c4a4c5da9559b4525 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 22-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RM11_RS02600 09121622e7f8d45c4a4c5da9559b4525 92 PANTHER PTHR33175 1 90 7.1E-42 T 22-04-2016 RM11_RS00510 cc807f85d3bd5d3f85451647c058ceda 214 Pfam PF08534 Redoxin 54 178 3.7E-16 T 22-04-2016 IPR013740 Redoxin GO:0016491 RM11_RS00510 cc807f85d3bd5d3f85451647c058ceda 214 ProSitePatterns PS00194 Thioredoxin family active site. 83 101 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RM11_RS00510 cc807f85d3bd5d3f85451647c058ceda 214 SUPERFAMILY SSF52833 49 188 5.1E-34 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS00510 cc807f85d3bd5d3f85451647c058ceda 214 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 23 190 1.5E-46 T 22-04-2016 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 RM11_RS00510 cc807f85d3bd5d3f85451647c058ceda 214 PANTHER PTHR10681:SF107 23 203 5.1E-41 T 22-04-2016 RM11_RS00510 cc807f85d3bd5d3f85451647c058ceda 214 Gene3D G3DSA:3.40.30.10 24 189 3.5E-39 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS00510 cc807f85d3bd5d3f85451647c058ceda 214 PANTHER PTHR10681 23 203 5.1E-41 T 22-04-2016 RM11_RS01605 9761dc8a6d0b45723a7ea116d672b989 263 SUPERFAMILY SSF53335 35 225 3.95E-21 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01605 9761dc8a6d0b45723a7ea116d672b989 263 Gene3D G3DSA:3.40.50.150 35 252 7.1E-55 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01605 9761dc8a6d0b45723a7ea116d672b989 263 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 130 136 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RM11_RS01605 9761dc8a6d0b45723a7ea116d672b989 263 Pfam PF05175 Methyltransferase small domain 37 143 1.3E-11 T 22-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RM11_RS01605 9761dc8a6d0b45723a7ea116d672b989 263 PANTHER PTHR18895 33 249 2.1E-14 T 22-04-2016 RM11_RS01335 5f2ecb6f01cb58cb7249da4326fcd1d5 476 PIRSF PIRSF006060 1 475 3.4E-75 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RM11_RS01335 5f2ecb6f01cb58cb7249da4326fcd1d5 476 Pfam PF00324 Amino acid permease 18 425 3.5E-101 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 RM11_RS01335 5f2ecb6f01cb58cb7249da4326fcd1d5 476 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RM11_RS03020 97cdca22edc4ba15c747fcd6550b23aa 503 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 148 494 3.0E-153 T 22-04-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 RM11_RS03020 97cdca22edc4ba15c747fcd6550b23aa 503 SUPERFAMILY SSF101960 39 500 3.14E-137 T 22-04-2016 RM11_RS03020 97cdca22edc4ba15c747fcd6550b23aa 503 Pfam PF01458 Uncharacterized protein family (UPF0051) 241 474 3.2E-68 T 22-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 RM11_RS03695 d6d4833f9af9853976b61b41728fbd33 403 PANTHER PTHR21716 49 376 6.2E-64 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like RM11_RS03695 d6d4833f9af9853976b61b41728fbd33 403 Pfam PF01594 Domain of unknown function DUF20 49 380 2.1E-60 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like RM11_RS02745 3c440cce9d71911bb4d65cc0b2cc13ef 437 PANTHER PTHR11680 11 433 1.4E-245 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RM11_RS02745 3c440cce9d71911bb4d65cc0b2cc13ef 437 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 16 432 52.345 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RM11_RS02745 3c440cce9d71911bb4d65cc0b2cc13ef 437 PIRSF PIRSF000412 1 435 5.5E-167 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RM11_RS02745 3c440cce9d71911bb4d65cc0b2cc13ef 437 SUPERFAMILY SSF53383 10 434 1.09E-176 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RM11_RS02745 3c440cce9d71911bb4d65cc0b2cc13ef 437 Gene3D G3DSA:3.40.640.10 46 292 2.3E-107 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RM11_RS02745 3c440cce9d71911bb4d65cc0b2cc13ef 437 Pfam PF00464 Serine hydroxymethyltransferase 18 394 1.4E-176 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RM11_RS02745 3c440cce9d71911bb4d65cc0b2cc13ef 437 Gene3D G3DSA:3.90.1150.10 293 433 6.9E-53 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RM11_RS02745 3c440cce9d71911bb4d65cc0b2cc13ef 437 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 231 247 - T 22-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RM11_RS03725 f2f8d5eb6043eb5d84bdee656624ee0c 178 Pfam PF01613 Flavin reductase like domain 28 176 4.1E-27 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RM11_RS03725 f2f8d5eb6043eb5d84bdee656624ee0c 178 SMART SM00903 28 175 5.8E-45 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RM11_RS03725 f2f8d5eb6043eb5d84bdee656624ee0c 178 Gene3D G3DSA:2.30.110.10 18 175 7.3E-46 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RM11_RS03725 f2f8d5eb6043eb5d84bdee656624ee0c 178 SUPERFAMILY SSF50475 23 176 2.89E-42 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RM11_RS03725 f2f8d5eb6043eb5d84bdee656624ee0c 178 PANTHER PTHR30466:SF2 11 176 1.8E-41 T 22-04-2016 RM11_RS03725 f2f8d5eb6043eb5d84bdee656624ee0c 178 PANTHER PTHR30466 11 176 1.8E-41 T 22-04-2016 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PANTHER PTHR11406 1 397 3.6E-177 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 Pfam PF00162 Phosphoglycerate kinase 6 386 2.6E-140 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 Gene3D G3DSA:3.40.50.1270 179 384 4.7E-75 T 22-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PIRSF PIRSF000724 1 397 1.3E-139 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 22-04-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 5 396 38.443 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 SUPERFAMILY SSF53748 1 395 6.24E-146 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PRINTS PR00477 Phosphoglycerate kinase family signature 372 389 3.9E-72 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PRINTS PR00477 Phosphoglycerate kinase family signature 349 360 3.9E-72 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 3.9E-72 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PRINTS PR00477 Phosphoglycerate kinase family signature 137 159 3.9E-72 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 3.9E-72 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PRINTS PR00477 Phosphoglycerate kinase family signature 312 337 3.9E-72 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PRINTS PR00477 Phosphoglycerate kinase family signature 190 209 3.9E-72 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PRINTS PR00477 Phosphoglycerate kinase family signature 167 189 3.9E-72 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 PRINTS PR00477 Phosphoglycerate kinase family signature 109 124 3.9E-72 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS05970 71527269f00359acdb63f122a8383533 397 Gene3D G3DSA:3.40.50.1260 4 178 4.2E-66 T 22-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RM11_RS06225 bb2f2131cb13214705ad24d764c318f7 105 Pfam PF04956 TrbC/VIRB2 family 6 99 5.6E-19 T 22-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RM11_RS06555 6c423e49f617a60cd2b1263ce80a6f4a 354 SUPERFAMILY SSF52540 9 213 4.14E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06555 6c423e49f617a60cd2b1263ce80a6f4a 354 Gene3D G3DSA:1.10.8.60 148 230 1.0E-10 T 22-04-2016 RM11_RS06555 6c423e49f617a60cd2b1263ce80a6f4a 354 PANTHER PTHR34388 21 348 6.3E-30 T 22-04-2016 RM11_RS06555 6c423e49f617a60cd2b1263ce80a6f4a 354 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 21 337 1.6E-49 T 22-04-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 RM11_RS06555 6c423e49f617a60cd2b1263ce80a6f4a 354 Gene3D G3DSA:3.40.50.300 21 124 3.2E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06555 6c423e49f617a60cd2b1263ce80a6f4a 354 Pfam PF06144 DNA polymerase III, delta subunit 24 192 4.4E-10 T 22-04-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 RM11_RS06555 6c423e49f617a60cd2b1263ce80a6f4a 354 SUPERFAMILY SSF48019 218 340 8.84E-12 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RM11_RS01445 f5795587823fc6830e0f8d3a25c923c5 427 PANTHER PTHR13847 100 427 3.0E-80 T 22-04-2016 RM11_RS01445 f5795587823fc6830e0f8d3a25c923c5 427 PANTHER PTHR13847 12 84 3.0E-80 T 22-04-2016 RM11_RS01445 f5795587823fc6830e0f8d3a25c923c5 427 Pfam PF01266 FAD dependent oxidoreductase 34 384 1.8E-51 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RM11_RS01445 f5795587823fc6830e0f8d3a25c923c5 427 Gene3D G3DSA:3.50.50.60 21 112 2.2E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS01445 f5795587823fc6830e0f8d3a25c923c5 427 Gene3D G3DSA:3.50.50.60 176 256 2.2E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS01445 f5795587823fc6830e0f8d3a25c923c5 427 Gene3D G3DSA:3.50.50.60 347 405 2.2E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS01445 f5795587823fc6830e0f8d3a25c923c5 427 PANTHER PTHR13847:SF210 100 427 3.0E-80 T 22-04-2016 RM11_RS01445 f5795587823fc6830e0f8d3a25c923c5 427 PANTHER PTHR13847:SF210 12 84 3.0E-80 T 22-04-2016 RM11_RS01445 f5795587823fc6830e0f8d3a25c923c5 427 SUPERFAMILY SSF51905 32 257 3.84E-48 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS01445 f5795587823fc6830e0f8d3a25c923c5 427 SUPERFAMILY SSF51905 347 422 3.84E-48 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RM11_RS05060 98ea69f6387455508a22f34d74854f2e 155 PANTHER PTHR13078 14 142 6.0E-32 T 22-04-2016 RM11_RS05060 98ea69f6387455508a22f34d74854f2e 155 Gene3D G3DSA:3.10.129.10 4 149 8.6E-36 T 22-04-2016 IPR029069 HotDog domain RM11_RS05060 98ea69f6387455508a22f34d74854f2e 155 SUPERFAMILY SSF54637 9 148 1.32E-36 T 22-04-2016 IPR029069 HotDog domain RM11_RS05060 98ea69f6387455508a22f34d74854f2e 155 Pfam PF01575 MaoC like domain 11 117 7.3E-29 T 22-04-2016 IPR002539 MaoC-like domain RM11_RS01410 1db6adfe639646d0eac4dda94ea772d0 852 SMART SM00843 777 842 4.3E-34 T 22-04-2016 IPR018541 FtsK gamma domain RM11_RS01410 1db6adfe639646d0eac4dda94ea772d0 852 SUPERFAMILY SSF46785 778 841 2.53E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS01410 1db6adfe639646d0eac4dda94ea772d0 852 SUPERFAMILY SSF52540 427 737 3.6E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01410 1db6adfe639646d0eac4dda94ea772d0 852 SMART SM00382 483 688 0.007 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS01410 1db6adfe639646d0eac4dda94ea772d0 852 Pfam PF09397 Ftsk gamma domain 779 839 8.4E-25 T 22-04-2016 IPR018541 FtsK gamma domain RM11_RS01410 1db6adfe639646d0eac4dda94ea772d0 852 Pfam PF01580 FtsK/SpoIIIE family 448 667 4.6E-67 T 22-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RM11_RS01410 1db6adfe639646d0eac4dda94ea772d0 852 PANTHER PTHR22683:SF41 340 841 2.0E-235 T 22-04-2016 RM11_RS01410 1db6adfe639646d0eac4dda94ea772d0 852 PANTHER PTHR22683 340 841 2.0E-235 T 22-04-2016 RM11_RS01410 1db6adfe639646d0eac4dda94ea772d0 852 Gene3D G3DSA:3.40.50.300 425 732 6.2E-96 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 332 414 9.1E-30 T 22-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 SUPERFAMILY SSF142984 240 325 7.59E-22 T 22-04-2016 RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 166 181 - T 22-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 47 218 7.4E-50 T 22-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 8 416 1.3E-191 T 22-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 PANTHER PTHR11780:SF10 2 428 3.3E-243 T 22-04-2016 RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 Pfam PF10531 SLBB domain 242 292 7.9E-7 T 22-04-2016 IPR019554 Soluble ligand binding domain RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 PANTHER PTHR11780 2 428 3.3E-243 T 22-04-2016 RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 343 354 - T 22-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 SUPERFAMILY SSF142019 3 239 8.37E-83 T 22-04-2016 RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 SMART SM00928 330 375 1.5E-23 T 22-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RM11_RS02890 d55326d54ddeb313cf671d0142de63a8 435 SUPERFAMILY SSF140490 326 419 1.83E-35 T 22-04-2016 RM11_RS01775 cab604ecc4a7342c0d3505119b195677 334 PANTHER PTHR11048 39 329 1.2E-113 T 22-04-2016 RM11_RS01775 cab604ecc4a7342c0d3505119b195677 334 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 31 326 26.749 T 22-04-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 UniPathway: UPA00232 RM11_RS01775 cab604ecc4a7342c0d3505119b195677 334 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 105 127 - T 22-04-2016 IPR030470 UbiA prenyltransferase conserved site RM11_RS01775 cab604ecc4a7342c0d3505119b195677 334 PANTHER PTHR11048:SF28 39 329 1.2E-113 T 22-04-2016 RM11_RS01775 cab604ecc4a7342c0d3505119b195677 334 Pfam PF01040 UbiA prenyltransferase family 55 311 5.2E-56 T 22-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RM11_RS01775 cab604ecc4a7342c0d3505119b195677 334 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 36 324 4.3E-110 T 22-04-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 RM11_RS00410 37295724dccbcf8987721057557949e1 288 SUPERFAMILY SSF81345 3 261 2.35E-38 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS00410 37295724dccbcf8987721057557949e1 288 PANTHER PTHR30477 2 283 2.6E-121 T 22-04-2016 RM11_RS00410 37295724dccbcf8987721057557949e1 288 Pfam PF00950 ABC 3 transport family 10 265 1.4E-79 T 22-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RM11_RS00410 37295724dccbcf8987721057557949e1 288 Gene3D G3DSA:1.10.3470.10 61 260 1.2E-8 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RM11_RS00410 37295724dccbcf8987721057557949e1 288 PANTHER PTHR30477:SF13 2 283 2.6E-121 T 22-04-2016 RM11_RS06740 884bddc4691222d346ddf7722249b59b 229 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 31 220 17.954 T 22-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RM11_RS06740 884bddc4691222d346ddf7722249b59b 229 PANTHER PTHR36917 28 50 4.5E-45 T 22-04-2016 RM11_RS06740 884bddc4691222d346ddf7722249b59b 229 PANTHER PTHR36917 66 229 4.5E-45 T 22-04-2016 RM11_RS06740 884bddc4691222d346ddf7722249b59b 229 Pfam PF04279 Intracellular septation protein A 32 218 1.1E-52 T 22-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RM11_RS06740 884bddc4691222d346ddf7722249b59b 229 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 32 218 3.1E-50 T 22-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RM11_RS06740 884bddc4691222d346ddf7722249b59b 229 PANTHER PTHR36917:SF1 28 50 4.5E-45 T 22-04-2016 RM11_RS06740 884bddc4691222d346ddf7722249b59b 229 PANTHER PTHR36917:SF1 66 229 4.5E-45 T 22-04-2016 RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 SMART SM00671 122 157 0.018 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 SMART SM00671 208 244 0.31 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 SMART SM00671 86 121 0.052 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 SMART SM00671 174 207 180.0 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 SMART SM00671 281 316 9.4 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 Pfam PF08238 Sel1 repeat 122 156 0.053 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 Pfam PF08238 Sel1 repeat 87 120 0.11 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 Pfam PF08238 Sel1 repeat 209 244 21.0 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 Pfam PF08238 Sel1 repeat 287 308 7.7 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 Pfam PF08238 Sel1 repeat 246 272 93.0 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 Pfam PF08238 Sel1 repeat 192 207 23.0 T 22-04-2016 IPR006597 Sel1-like repeat RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 Gene3D G3DSA:1.25.40.10 57 317 1.4E-38 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 SUPERFAMILY SSF81901 58 316 3.75E-35 T 22-04-2016 RM11_RS05940 af3af8a23f90046dbe564d21e4d446a3 347 PANTHER PTHR11102 64 311 2.3E-29 T 22-04-2016 RM11_RS05925 5d708e0a411611294bbbed49bee234d9 220 SUPERFAMILY SSF51391 30 216 5.1E-31 T 22-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RM11_RS05925 5d708e0a411611294bbbed49bee234d9 220 Gene3D G3DSA:3.20.20.70 32 217 1.0E-19 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS05925 5d708e0a411611294bbbed49bee234d9 220 Pfam PF02581 Thiamine monophosphate synthase/TENI 55 194 3.4E-21 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RM11_RS04190 79fd0b84d3ced0324883f615cc4fa947 441 PANTHER PTHR30026 14 439 2.2E-79 T 22-04-2016 RM11_RS04190 79fd0b84d3ced0324883f615cc4fa947 441 Pfam PF02321 Outer membrane efflux protein 242 418 4.0E-30 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RM11_RS04190 79fd0b84d3ced0324883f615cc4fa947 441 Pfam PF02321 Outer membrane efflux protein 42 222 4.8E-26 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RM11_RS04190 79fd0b84d3ced0324883f615cc4fa947 441 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 37 434 4.0E-96 T 22-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RM11_RS04190 79fd0b84d3ced0324883f615cc4fa947 441 SUPERFAMILY SSF56954 9 427 9.42E-84 T 22-04-2016 RM11_RS04190 79fd0b84d3ced0324883f615cc4fa947 441 PANTHER PTHR30026:SF3 14 439 2.2E-79 T 22-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RM11_RS04190 79fd0b84d3ced0324883f615cc4fa947 441 Gene3D G3DSA:1.20.1600.10 38 427 2.5E-73 T 22-04-2016 RM11_RS02175 84497d6b57db74f0e70f71851ce578de 192 Pfam PF00156 Phosphoribosyl transferase domain 45 155 1.1E-17 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RM11_RS02175 84497d6b57db74f0e70f71851ce578de 192 Gene3D G3DSA:3.40.50.2020 3 173 2.8E-43 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RM11_RS02175 84497d6b57db74f0e70f71851ce578de 192 SUPERFAMILY SSF53271 4 176 6.73E-36 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RM11_RS02175 84497d6b57db74f0e70f71851ce578de 192 TIGRFAM TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase 5 190 2.3E-66 T 22-04-2016 IPR006273 Orotate phosphoribosyltransferase, bacterial GO:0004588|GO:0019856 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS02175 84497d6b57db74f0e70f71851ce578de 192 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 192 24.617 T 22-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 RM11_RS02175 84497d6b57db74f0e70f71851ce578de 192 PANTHER PTHR19278 4 162 5.2E-26 T 22-04-2016 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 Pfam PF13481 AAA domain 68 221 5.3E-19 T 22-04-2016 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 Pfam PF13541 Subunit ChlI of Mg-chelatase 340 427 3.2E-7 T 22-04-2016 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 Gene3D G3DSA:3.30.230.10 284 434 3.3E-29 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 SMART SM00382 88 243 1.8E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 PRINTS PR01874 DNA repair protein radA signature 173 197 4.3E-88 T 22-04-2016 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 PRINTS PR01874 DNA repair protein radA signature 321 344 4.3E-88 T 22-04-2016 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 PRINTS PR01874 DNA repair protein radA signature 247 273 4.3E-88 T 22-04-2016 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 PRINTS PR01874 DNA repair protein radA signature 212 240 4.3E-88 T 22-04-2016 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 PRINTS PR01874 DNA repair protein radA signature 10 34 4.3E-88 T 22-04-2016 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 PRINTS PR01874 DNA repair protein radA signature 122 139 4.3E-88 T 22-04-2016 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 PRINTS PR01874 DNA repair protein radA signature 80 108 4.3E-88 T 22-04-2016 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 Gene3D G3DSA:3.40.50.300 64 275 8.9E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 SUPERFAMILY SSF54211 254 268 8.34E-35 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 SUPERFAMILY SSF54211 302 430 8.34E-35 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 440 4.0E-164 T 22-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RM11_RS02280 b87a73df7bfdbc8bdf46b346de3a5a83 464 SUPERFAMILY SSF52540 65 291 2.16E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02390 d5eff4dbed1a852f92e4b4eca57f608b 429 Gene3D G3DSA:1.20.1250.20 18 226 2.9E-23 T 22-04-2016 RM11_RS02390 d5eff4dbed1a852f92e4b4eca57f608b 429 Gene3D G3DSA:1.20.1250.20 244 422 4.3E-14 T 22-04-2016 RM11_RS02390 d5eff4dbed1a852f92e4b4eca57f608b 429 SUPERFAMILY SSF103473 15 422 1.7E-61 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS02390 d5eff4dbed1a852f92e4b4eca57f608b 429 Pfam PF07690 Major Facilitator Superfamily 41 384 2.9E-25 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RM11_RS04100 a642fdf2da47caac5e1a10afd3e73890 129 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 17 119 2.7E-33 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RM11_RS04100 a642fdf2da47caac5e1a10afd3e73890 129 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 13 122 25.202 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RM11_RS04100 a642fdf2da47caac5e1a10afd3e73890 129 SUPERFAMILY SSF54843 10 123 1.29E-39 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RM11_RS04100 a642fdf2da47caac5e1a10afd3e73890 129 Gene3D G3DSA:3.90.470.10 14 123 7.9E-40 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RM11_RS04100 a642fdf2da47caac5e1a10afd3e73890 129 ProSitePatterns PS00464 Ribosomal protein L22 signature. 95 119 - T 22-04-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04100 a642fdf2da47caac5e1a10afd3e73890 129 PANTHER PTHR13501 8 123 3.6E-44 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RM11_RS04100 a642fdf2da47caac5e1a10afd3e73890 129 Pfam PF00237 Ribosomal protein L22p/L17e 20 119 6.8E-28 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RM11_RS00320 6eb4fb690b657dc58625527df1fb2094 304 Pfam PF00892 EamA-like transporter family 156 285 3.3E-15 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RM11_RS00320 6eb4fb690b657dc58625527df1fb2094 304 Pfam PF00892 EamA-like transporter family 16 144 1.7E-16 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RM11_RS00320 6eb4fb690b657dc58625527df1fb2094 304 SUPERFAMILY SSF103481 48 147 1.96E-10 T 22-04-2016 RM11_RS00320 6eb4fb690b657dc58625527df1fb2094 304 PANTHER PTHR12715 17 303 3.7E-44 T 22-04-2016 RM11_RS00320 6eb4fb690b657dc58625527df1fb2094 304 SUPERFAMILY SSF103481 190 290 2.35E-13 T 22-04-2016 RM11_RS03015 ec68d1b8e3db5b7256a7ffb799662dbf 381 PANTHER PTHR11601:SF45 4 377 9.3E-82 T 22-04-2016 RM11_RS03015 ec68d1b8e3db5b7256a7ffb799662dbf 381 SUPERFAMILY SSF53383 5 377 1.48E-73 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RM11_RS03015 ec68d1b8e3db5b7256a7ffb799662dbf 381 Gene3D G3DSA:3.40.640.10 22 251 3.6E-51 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RM11_RS03015 ec68d1b8e3db5b7256a7ffb799662dbf 381 PIRSF PIRSF005572 4 381 2.0E-99 T 22-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RM11_RS03015 ec68d1b8e3db5b7256a7ffb799662dbf 381 Pfam PF00266 Aminotransferase class-V 7 368 1.1E-44 T 22-04-2016 IPR000192 Aminotransferase class V domain RM11_RS03015 ec68d1b8e3db5b7256a7ffb799662dbf 381 PANTHER PTHR11601 4 377 9.3E-82 T 22-04-2016 RM11_RS03015 ec68d1b8e3db5b7256a7ffb799662dbf 381 Gene3D G3DSA:3.90.1150.10 252 370 1.3E-31 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RM11_RS04840 4807405f572d29c6f700bc0cbede206f 44 PANTHER PTHR14503 1 44 2.3E-21 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04840 4807405f572d29c6f700bc0cbede206f 44 Pfam PF00468 Ribosomal protein L34 1 44 4.0E-24 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04840 4807405f572d29c6f700bc0cbede206f 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 3.4E-24 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04840 4807405f572d29c6f700bc0cbede206f 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.894 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04840 4807405f572d29c6f700bc0cbede206f 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 42 5.0E-14 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04840 4807405f572d29c6f700bc0cbede206f 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 22-04-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04605 57d529e844750f7778d89d19b3417d0b 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 22-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RM11_RS04605 57d529e844750f7778d89d19b3417d0b 400 PANTHER PTHR11751 14 399 2.0E-163 T 22-04-2016 RM11_RS04605 57d529e844750f7778d89d19b3417d0b 400 Pfam PF00155 Aminotransferase class I and II 32 392 1.2E-76 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RM11_RS04605 57d529e844750f7778d89d19b3417d0b 400 SUPERFAMILY SSF53383 1 398 1.1E-110 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RM11_RS04605 57d529e844750f7778d89d19b3417d0b 400 PANTHER PTHR11751:SF306 14 399 2.0E-163 T 22-04-2016 RM11_RS04605 57d529e844750f7778d89d19b3417d0b 400 Gene3D G3DSA:3.40.640.10 45 276 7.6E-71 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RM11_RS04605 57d529e844750f7778d89d19b3417d0b 400 Gene3D G3DSA:3.90.1150.10 277 399 1.9E-45 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RM11_RS05885 61ec9196b6c46d0fd8b0a1b503be3079 150 TIGRFAM TIGR02801 tolR: protein TolR 24 146 1.7E-38 T 22-04-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 RM11_RS05885 61ec9196b6c46d0fd8b0a1b503be3079 150 Pfam PF02472 Biopolymer transport protein ExbD/TolR 22 147 6.4E-26 T 22-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RM11_RS05885 61ec9196b6c46d0fd8b0a1b503be3079 150 Gene3D G3DSA:1.20.1250.10 53 115 8.8E-4 T 22-04-2016 IPR012351 Four-helical cytokine, core RM11_RS06760 4e3a705e1a91e0ce099445f6fff288b2 215 PANTHER PTHR31760 19 188 8.1E-36 T 22-04-2016 RM11_RS06760 4e3a705e1a91e0ce099445f6fff288b2 215 PANTHER PTHR31760:SF0 19 188 8.1E-36 T 22-04-2016 RM11_RS06760 4e3a705e1a91e0ce099445f6fff288b2 215 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 16 205 23.07 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RM11_RS06760 4e3a705e1a91e0ce099445f6fff288b2 215 Pfam PF02527 rRNA small subunit methyltransferase G 25 196 3.6E-41 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RM11_RS06760 4e3a705e1a91e0ce099445f6fff288b2 215 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 28 205 5.0E-40 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RM11_RS06760 4e3a705e1a91e0ce099445f6fff288b2 215 SUPERFAMILY SSF53335 6 189 2.26E-32 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS06760 4e3a705e1a91e0ce099445f6fff288b2 215 PIRSF PIRSF003078 6 209 4.7E-41 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RM11_RS06760 4e3a705e1a91e0ce099445f6fff288b2 215 Gene3D G3DSA:3.40.50.150 10 209 9.0E-47 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS02750 1efb0338961f25ec299e217eb149cc5a 160 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 82.061 T 22-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RM11_RS02750 1efb0338961f25ec299e217eb149cc5a 160 Pfam PF03477 ATP cone domain 50 136 5.1E-17 T 22-04-2016 IPR005144 ATP-cone domain RM11_RS02750 1efb0338961f25ec299e217eb149cc5a 160 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 4.9E-49 T 22-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RM11_RS02335 60fcd5783da6de75539577fcd5583f6c 369 Gene3D G3DSA:3.30.160.60 334 367 1.6E-17 T 22-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 RM11_RS02335 60fcd5783da6de75539577fcd5583f6c 369 PANTHER PTHR30518 31 369 6.6E-80 T 22-04-2016 RM11_RS02335 60fcd5783da6de75539577fcd5583f6c 369 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 186 362 9.8E-60 T 22-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RM11_RS02335 60fcd5783da6de75539577fcd5583f6c 369 PANTHER PTHR30518:SF2 31 369 6.6E-80 T 22-04-2016 RM11_RS02335 60fcd5783da6de75539577fcd5583f6c 369 Pfam PF02618 YceG-like family 85 361 6.0E-79 T 22-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RM11_RS06305 b987c4710012e40afde0cb80cf7a8283 232 PIRSF PIRSF003299 7 230 1.5E-56 T 22-04-2016 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 RM11_RS06305 b987c4710012e40afde0cb80cf7a8283 232 SUPERFAMILY SSF54427 92 228 6.57E-42 T 22-04-2016 IPR032710 NTF2-like domain RM11_RS06305 b987c4710012e40afde0cb80cf7a8283 232 Pfam PF04335 VirB8 protein 24 227 4.0E-47 T 22-04-2016 IPR007430 Bacterial virulence protein VirB8 GO:0016020 RM11_RS06065 d731761026ecd4452f42a584c2fe2905 413 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 13 402 8.5E-125 T 22-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RM11_RS06065 d731761026ecd4452f42a584c2fe2905 413 PIRSF PIRSF004640 5 413 3.9E-127 T 22-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RM11_RS06065 d731761026ecd4452f42a584c2fe2905 413 PANTHER PTHR30454 10 402 6.0E-139 T 22-04-2016 RM11_RS06065 d731761026ecd4452f42a584c2fe2905 413 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 11 407 28.934 T 22-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RM11_RS06065 d731761026ecd4452f42a584c2fe2905 413 SUPERFAMILY SSF56014 302 408 1.57E-5 T 22-04-2016 RM11_RS06065 d731761026ecd4452f42a584c2fe2905 413 Pfam PF04551 GcpE protein 18 402 1.3E-111 T 22-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RM11_RS04500 7ac74fe49ef55d8d42cea0b5ff871132 202 Gene3D G3DSA:3.40.50.850 2 199 1.2E-61 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RM11_RS04500 7ac74fe49ef55d8d42cea0b5ff871132 202 PANTHER PTHR11080:SF2 2 202 8.4E-65 T 22-04-2016 RM11_RS04500 7ac74fe49ef55d8d42cea0b5ff871132 202 SUPERFAMILY SSF52499 2 196 7.85E-46 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RM11_RS04500 7ac74fe49ef55d8d42cea0b5ff871132 202 Pfam PF00857 Isochorismatase family 5 198 8.3E-27 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RM11_RS04500 7ac74fe49ef55d8d42cea0b5ff871132 202 PANTHER PTHR11080 2 202 8.4E-65 T 22-04-2016 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PANTHER PTHR30009:SF0 1 417 6.7E-224 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PANTHER PTHR30009:SF0 472 656 6.7E-224 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 638 6.7E-97 T 22-04-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 Pfam PF01578 Cytochrome C assembly protein 89 297 1.4E-46 T 22-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PANTHER PTHR30009 1 417 6.7E-224 T 22-04-2016 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PANTHER PTHR30009 472 656 6.7E-224 T 22-04-2016 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 9.3E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 9.3E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 9.3E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 9.3E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 9.3E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 9.3E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 9.3E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 9.3E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 5.6E-36 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 5.6E-36 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 5.6E-36 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 5.6E-36 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 5.6E-36 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS02030 d0b43b0e1fc70debe38a2d9516df6fc7 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 5.6E-36 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RM11_RS04470 761124aa2649cbd33adbf5a16e6e7c77 169 Pfam PF01464 Transglycosylase SLT domain 51 150 2.8E-21 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 RM11_RS04470 761124aa2649cbd33adbf5a16e6e7c77 169 Gene3D G3DSA:1.10.530.10 46 164 5.7E-31 T 22-04-2016 RM11_RS04470 761124aa2649cbd33adbf5a16e6e7c77 169 PANTHER PTHR21666 31 144 5.0E-20 T 22-04-2016 RM11_RS04470 761124aa2649cbd33adbf5a16e6e7c77 169 SUPERFAMILY SSF53955 44 167 1.34E-31 T 22-04-2016 IPR023346 Lysozyme-like domain RM11_RS01950 0a4e29a13393c8667fdf3c69ca041082 136 Gene3D G3DSA:3.90.1010.10 2 134 1.2E-52 T 22-04-2016 RM11_RS01950 0a4e29a13393c8667fdf3c69ca041082 136 PANTHER PTHR12735 1 132 8.8E-47 T 22-04-2016 RM11_RS01950 0a4e29a13393c8667fdf3c69ca041082 136 PANTHER PTHR12735:SF26 1 132 8.8E-47 T 22-04-2016 RM11_RS01950 0a4e29a13393c8667fdf3c69ca041082 136 SUPERFAMILY SSF82649 3 132 1.67E-46 T 22-04-2016 RM11_RS01950 0a4e29a13393c8667fdf3c69ca041082 136 Pfam PF02657 Fe-S metabolism associated domain 9 132 1.8E-46 T 22-04-2016 IPR003808 Fe-S metabolism associated domain, SufE-like UniPathway: UPA00266 RM11_RS06005 fe884df20de3ebb7eedd3cc4a94f7168 177 Pfam PF06282 Protein of unknown function (DUF1036) 44 156 1.7E-39 T 22-04-2016 IPR009380 Protein of unknown function DUF1036 RM11_RS02080 9611cf7e19880a84446a262aee0669c6 275 SMART SM00987 114 265 3.4E-35 T 22-04-2016 RM11_RS02080 9611cf7e19880a84446a262aee0669c6 275 Gene3D G3DSA:3.40.470.10 89 273 3.0E-62 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS02080 9611cf7e19880a84446a262aee0669c6 275 PANTHER PTHR33693 13 275 4.3E-71 T 22-04-2016 RM11_RS02080 9611cf7e19880a84446a262aee0669c6 275 SMART SM00986 114 265 3.4E-35 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS02080 9611cf7e19880a84446a262aee0669c6 275 PANTHER PTHR33693:SF1 13 275 4.3E-71 T 22-04-2016 RM11_RS02080 9611cf7e19880a84446a262aee0669c6 275 Pfam PF03167 Uracil DNA glycosylase superfamily 116 264 2.4E-41 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS02080 9611cf7e19880a84446a262aee0669c6 275 SUPERFAMILY SSF52141 87 272 3.6E-58 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RM11_RS02080 9611cf7e19880a84446a262aee0669c6 275 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 101 271 4.7E-56 T 22-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RM11_RS06160 95aab4fff0827582c857b1b403d0e651 224 Gene3D G3DSA:3.40.50.620 136 182 2.2E-5 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RM11_RS06160 95aab4fff0827582c857b1b403d0e651 224 Pfam PF02698 DUF218 domain 76 188 1.4E-11 T 22-04-2016 IPR003848 Domain of unknown function DUF218 RM11_RS06160 95aab4fff0827582c857b1b403d0e651 224 ProDom PD207074 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED RC1356 RP875 76 186 5.0E-7 T 22-04-2016 RM11_RS00505 28fdae297bf2f756891ea2bcbfaf6484 177 Pfam PF07750 GcrA cell cycle regulator 1 176 1.8E-60 T 22-04-2016 IPR011681 GcrA cell cycle regulator RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 SUPERFAMILY SSF69304 161 436 1.14E-52 T 22-04-2016 RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 PANTHER PTHR36842 10 440 6.2E-56 T 22-04-2016 RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 Hamap MF_00671 Protein TolB [tolB]. 13 434 30.295 T 22-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 Pfam PF07676 WD40-like Beta Propeller Repeat 332 366 2.2E-4 T 22-04-2016 IPR011659 WD40-like Beta Propeller RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 Pfam PF07676 WD40-like Beta Propeller Repeat 288 324 8.0E-13 T 22-04-2016 IPR011659 WD40-like Beta Propeller RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 Pfam PF07676 WD40-like Beta Propeller Repeat 376 401 9.5E-5 T 22-04-2016 IPR011659 WD40-like Beta Propeller RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 Gene3D G3DSA:3.40.50.10070 33 156 2.5E-46 T 22-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 Pfam PF04052 TolB amino-terminal domain 35 134 2.7E-29 T 22-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 Gene3D G3DSA:2.130.10.10 157 436 1.1E-68 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 SUPERFAMILY SSF52964 39 166 7.06E-38 T 22-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RM11_RS05875 afd96de4b13016b93a7c5d2ab1400d20 441 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 25 435 1.0E-134 T 22-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RM11_RS04390 2f55b93d5edae475242b479c40beb17e 290 PANTHER PTHR33694:SF1 6 286 3.4E-78 T 22-04-2016 RM11_RS04390 2f55b93d5edae475242b479c40beb17e 290 PANTHER PTHR33694 6 286 3.4E-78 T 22-04-2016 RM11_RS04390 2f55b93d5edae475242b479c40beb17e 290 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 8 279 8.3E-85 T 22-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RM11_RS04390 2f55b93d5edae475242b479c40beb17e 290 SUPERFAMILY SSF54211 138 281 1.29E-37 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS04390 2f55b93d5edae475242b479c40beb17e 290 Gene3D G3DSA:3.30.230.20 6 129 9.5E-36 T 22-04-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RM11_RS04390 2f55b93d5edae475242b479c40beb17e 290 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 6 284 37.217 T 22-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RM11_RS04390 2f55b93d5edae475242b479c40beb17e 290 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 8 286 1.8E-78 T 22-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RM11_RS04390 2f55b93d5edae475242b479c40beb17e 290 SUPERFAMILY SSF54211 7 129 2.58E-35 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RM11_RS04390 2f55b93d5edae475242b479c40beb17e 290 Gene3D G3DSA:3.30.1700.10 133 286 1.5E-43 T 22-04-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RM11_RS06480 14b45452999afcd766eac25068331001 364 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 134 146 1.7E-47 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS06480 14b45452999afcd766eac25068331001 364 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.7E-47 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS06480 14b45452999afcd766eac25068331001 364 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 157 178 1.7E-47 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS06480 14b45452999afcd766eac25068331001 364 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 80 100 1.7E-47 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS06480 14b45452999afcd766eac25068331001 364 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 279 288 1.7E-47 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS06480 14b45452999afcd766eac25068331001 364 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 101 120 1.7E-47 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS06480 14b45452999afcd766eac25068331001 364 PANTHER PTHR11735:SF6 1 349 1.3E-146 T 22-04-2016 RM11_RS06480 14b45452999afcd766eac25068331001 364 Pfam PF00814 Glycoprotease family 27 323 1.5E-98 T 22-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS06480 14b45452999afcd766eac25068331001 364 Gene3D G3DSA:3.30.420.40 1 162 1.2E-45 T 22-04-2016 RM11_RS06480 14b45452999afcd766eac25068331001 364 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 322 7.5E-102 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS06480 14b45452999afcd766eac25068331001 364 PANTHER PTHR11735 1 349 1.3E-146 T 22-04-2016 RM11_RS06480 14b45452999afcd766eac25068331001 364 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 4 329 5.2E-128 T 22-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS06480 14b45452999afcd766eac25068331001 364 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 347 62.43 T 22-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS06480 14b45452999afcd766eac25068331001 364 SUPERFAMILY SSF53067 105 325 4.17E-43 T 22-04-2016 RM11_RS06480 14b45452999afcd766eac25068331001 364 SUPERFAMILY SSF53067 3 127 7.12E-30 T 22-04-2016 RM11_RS02325 7373be405154d236c46ca4695498ac94 78 SUPERFAMILY SSF47336 2 76 4.97E-22 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain RM11_RS02325 7373be405154d236c46ca4695498ac94 78 SMART SM00823 Phosphopantetheine attachment site 5 63 0.0098 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 RM11_RS02325 7373be405154d236c46ca4695498ac94 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 34 73 1.0E-12 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RM11_RS02325 7373be405154d236c46ca4695498ac94 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 75 4.0E-33 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RM11_RS02325 7373be405154d236c46ca4695498ac94 78 Gene3D G3DSA:1.10.1200.10 3 75 9.0E-32 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain RM11_RS02325 7373be405154d236c46ca4695498ac94 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 2.5E-13 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain RM11_RS02325 7373be405154d236c46ca4695498ac94 78 PANTHER PTHR20863 3 75 3.0E-29 T 22-04-2016 RM11_RS02325 7373be405154d236c46ca4695498ac94 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site RM11_RS02325 7373be405154d236c46ca4695498ac94 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 21.925 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RM11_RS03035 d6b1490ea3a17a1589179b2d281df513 414 SUPERFAMILY SSF53383 10 408 5.72E-123 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RM11_RS03035 d6b1490ea3a17a1589179b2d281df513 414 Gene3D G3DSA:3.40.640.10 43 291 3.2E-86 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RM11_RS03035 d6b1490ea3a17a1589179b2d281df513 414 PANTHER PTHR11601:SF17 13 413 2.9E-187 T 22-04-2016 RM11_RS03035 d6b1490ea3a17a1589179b2d281df513 414 Gene3D G3DSA:3.90.1150.10 292 407 4.6E-25 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RM11_RS03035 d6b1490ea3a17a1589179b2d281df513 414 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 13 412 4.1E-175 T 22-04-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RM11_RS03035 d6b1490ea3a17a1589179b2d281df513 414 PIRSF PIRSF005572 29 411 3.2E-49 T 22-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RM11_RS03035 d6b1490ea3a17a1589179b2d281df513 414 Pfam PF00266 Aminotransferase class-V 33 401 2.4E-139 T 22-04-2016 IPR000192 Aminotransferase class V domain RM11_RS03035 d6b1490ea3a17a1589179b2d281df513 414 PANTHER PTHR11601 13 413 2.9E-187 T 22-04-2016 RM11_RS03130 b698dc1c7f7c9d923cb0000ac48cb0e8 278 Gene3D G3DSA:3.40.1280.10 5 172 6.1E-31 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RM11_RS03130 b698dc1c7f7c9d923cb0000ac48cb0e8 278 SUPERFAMILY SSF75217 13 171 5.69E-33 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases RM11_RS03130 b698dc1c7f7c9d923cb0000ac48cb0e8 278 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 17 249 1.5E-51 T 22-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RM11_RS03130 b698dc1c7f7c9d923cb0000ac48cb0e8 278 PANTHER PTHR12029 16 104 2.2E-23 T 22-04-2016 RM11_RS03130 b698dc1c7f7c9d923cb0000ac48cb0e8 278 PANTHER PTHR12029 120 189 2.2E-23 T 22-04-2016 RM11_RS03130 b698dc1c7f7c9d923cb0000ac48cb0e8 278 Pfam PF00588 SpoU rRNA Methylase family 16 166 1.4E-32 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RM11_RS03130 b698dc1c7f7c9d923cb0000ac48cb0e8 278 PIRSF PIRSF004808 9 257 8.8E-80 T 22-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RM11_RS01855 4f7d21bf277230a15833d5f16d4c5757 155 PANTHER PTHR10642 8 148 1.6E-53 T 22-04-2016 RM11_RS01855 4f7d21bf277230a15833d5f16d4c5757 155 SUPERFAMILY SSF53098 6 144 2.91E-55 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS01855 4f7d21bf277230a15833d5f16d4c5757 155 Pfam PF00075 RNase H 6 144 9.2E-48 T 22-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RM11_RS01855 4f7d21bf277230a15833d5f16d4c5757 155 Gene3D G3DSA:3.30.420.10 6 147 8.2E-56 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS01855 4f7d21bf277230a15833d5f16d4c5757 155 Hamap MF_00042 Ribonuclease H [rnhA]. 5 153 31.625 T 22-04-2016 IPR022892 Ribonuclease H GO:0004523 RM11_RS02800 752ff486e5be38a61a46a2520885a15a 167 Pfam PF13411 MerR HTH family regulatory protein 10 78 3.6E-24 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RM11_RS02800 752ff486e5be38a61a46a2520885a15a 167 Gene3D G3DSA:1.10.1660.10 10 81 1.8E-13 T 22-04-2016 RM11_RS02800 752ff486e5be38a61a46a2520885a15a 167 SUPERFAMILY SSF46955 10 77 1.88E-14 T 22-04-2016 IPR009061 Putative DNA-binding domain RM11_RS02800 752ff486e5be38a61a46a2520885a15a 167 SMART SM00422 10 79 2.2E-5 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 PANTHER PTHR22773:SF46 1 521 2.0E-208 T 22-04-2016 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 826 946 5.9E-31 T 22-04-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 311 323 1.3E-35 T 22-04-2016 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 243 269 1.3E-35 T 22-04-2016 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 155 176 1.3E-35 T 22-04-2016 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 420 439 1.3E-35 T 22-04-2016 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 108 128 1.3E-35 T 22-04-2016 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 80 105 1.3E-35 T 22-04-2016 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 221 242 1.3E-35 T 22-04-2016 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 73 118 4.6E-11 T 22-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 Pfam PF13244 Domain of unknown function (DUF4040) 623 686 3.5E-19 T 22-04-2016 IPR025383 Domain of unknown function DUF4040 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 PANTHER PTHR22773 1 521 2.0E-208 T 22-04-2016 RM11_RS06665 28858742e6d2e9f92c781403def00ffa 973 Pfam PF00361 Proton-conducting membrane transporter 131 408 8.7E-62 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RM11_RS01135 7cfa20b233d7950c374a9096f47c277e 348 PANTHER PTHR30570:SF1 24 346 3.8E-33 T 22-04-2016 RM11_RS01135 7cfa20b233d7950c374a9096f47c277e 348 PANTHER PTHR30570 24 346 3.8E-33 T 22-04-2016 RM11_RS01135 7cfa20b233d7950c374a9096f47c277e 348 SUPERFAMILY SSF53850 26 340 1.14E-62 T 22-04-2016 RM11_RS01135 7cfa20b233d7950c374a9096f47c277e 348 Pfam PF12849 PBP superfamily domain 24 311 5.0E-41 T 22-04-2016 IPR024370 PBP domain RM11_RS01135 7cfa20b233d7950c374a9096f47c277e 348 Gene3D G3DSA:3.40.190.10 27 183 5.0E-27 T 22-04-2016 RM11_RS00235 d91d6dec64ed00235de7d69d89480c56 248 Pfam PF01863 Protein of unknown function DUF45 26 232 1.1E-56 T 22-04-2016 IPR002725 Protein of unknown function DUF45 RM11_RS00235 d91d6dec64ed00235de7d69d89480c56 248 PANTHER PTHR30399:SF3 8 237 2.2E-57 T 22-04-2016 RM11_RS00235 d91d6dec64ed00235de7d69d89480c56 248 PANTHER PTHR30399 8 237 2.2E-57 T 22-04-2016 RM11_RS06060 c4300bb5c240b89bf2f08a5e8982f319 301 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 87 103 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RM11_RS06060 c4300bb5c240b89bf2f08a5e8982f319 301 SUPERFAMILY SSF48576 33 294 2.16E-77 T 22-04-2016 IPR008949 Isoprenoid synthase domain RM11_RS06060 c4300bb5c240b89bf2f08a5e8982f319 301 Pfam PF00348 Polyprenyl synthetase 37 271 4.4E-53 T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RM11_RS06060 c4300bb5c240b89bf2f08a5e8982f319 301 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 220 232 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RM11_RS06060 c4300bb5c240b89bf2f08a5e8982f319 301 Gene3D G3DSA:1.10.600.10 3 299 7.9E-90 T 22-04-2016 IPR008949 Isoprenoid synthase domain RM11_RS06060 c4300bb5c240b89bf2f08a5e8982f319 301 PANTHER PTHR12001 3 276 1.5E-94 T 22-04-2016 IPR017446 Polyprenyl synthetase-related RM11_RS06060 c4300bb5c240b89bf2f08a5e8982f319 301 PANTHER PTHR12001:SF23 3 276 1.5E-94 T 22-04-2016 RM11_RS05810 348eb80040622abb1bafb298c0276801 280 PANTHER PTHR30572:SF11 13 271 5.1E-45 T 22-04-2016 RM11_RS05810 348eb80040622abb1bafb298c0276801 280 PANTHER PTHR30572 13 271 5.1E-45 T 22-04-2016 RM11_RS05810 348eb80040622abb1bafb298c0276801 280 Pfam PF01618 MotA/TolQ/ExbB proton channel family 151 251 8.6E-31 T 22-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RM11_RS05735 eb94d898213faea2f138d3f05d8b4d52 314 Pfam PF03421 YopJ Serine/Threonine acetyltransferase 51 222 3.6E-44 T 22-04-2016 IPR005083 Serine/Threonine acetyltransferase, YopJ RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 Pfam PF02954 Bacterial regulatory protein, Fis family 409 448 4.0E-9 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 SUPERFAMILY SSF52172 4 186 2.85E-40 T 22-04-2016 IPR011006 CheY-like superfamily RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 Gene3D G3DSA:3.40.50.2300 4 128 3.2E-33 T 22-04-2016 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 PANTHER PTHR32071 1 452 3.3E-206 T 22-04-2016 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 SUPERFAMILY SSF52540 142 381 4.0E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 224 239 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 Gene3D G3DSA:1.10.10.60 385 450 6.4E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 Pfam PF00072 Response regulator receiver domain 5 114 2.7E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 SUPERFAMILY SSF46689 351 451 5.82E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 PANTHER PTHR32071:SF17 1 452 3.3E-206 T 22-04-2016 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 351 360 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 Pfam PF00158 Sigma-54 interaction domain 143 304 5.4E-51 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 SMART SM00382 162 301 5.1E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 SMART SM00448 3 116 1.4E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 Gene3D G3DSA:1.10.8.60 312 384 2.2E-23 T 22-04-2016 RM11_RS02570 dba86f350b5b6726e3a69dbe8daf612e 452 Gene3D G3DSA:3.40.50.300 139 309 1.1E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06670 b94a04d59c6f0108bb95cba5ef9d9823 161 Pfam PF07886 BA14K-like protein 126 154 2.8E-13 T 22-04-2016 IPR012413 BA14k family GO:0009405 RM11_RS06680 8de41e93875bf36f81266f736aed0ab4 412 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 150 396 2.1E-22 T 22-04-2016 IPR032095 Saccharopine dehydrogenase, C-terminal RM11_RS06680 8de41e93875bf36f81266f736aed0ab4 412 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 5 146 9.3E-32 T 22-04-2016 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 RM11_RS06680 8de41e93875bf36f81266f736aed0ab4 412 PANTHER PTHR12286:SF6 1 410 1.2E-104 T 22-04-2016 RM11_RS06680 8de41e93875bf36f81266f736aed0ab4 412 SUPERFAMILY SSF51735 1 202 4.81E-13 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06680 8de41e93875bf36f81266f736aed0ab4 412 Gene3D G3DSA:3.40.50.720 3 199 2.3E-32 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06680 8de41e93875bf36f81266f736aed0ab4 412 PANTHER PTHR12286 1 410 1.2E-104 T 22-04-2016 RM11_RS03070 2f2af573c04e6d898fdfbb788e9cf4c5 257 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RM11_RS03070 2f2af573c04e6d898fdfbb788e9cf4c5 257 PANTHER PTHR10060 1 257 3.8E-109 T 22-04-2016 IPR001130 TatD family GO:0016788 RM11_RS03070 2f2af573c04e6d898fdfbb788e9cf4c5 257 PIRSF PIRSF005902 1 257 5.8E-78 T 22-04-2016 IPR001130 TatD family GO:0016788 RM11_RS03070 2f2af573c04e6d898fdfbb788e9cf4c5 257 SUPERFAMILY SSF51556 2 254 2.61E-84 T 22-04-2016 IPR032466 Metal-dependent hydrolase RM11_RS03070 2f2af573c04e6d898fdfbb788e9cf4c5 257 Pfam PF01026 TatD related DNase 3 254 1.8E-75 T 22-04-2016 IPR001130 TatD family GO:0016788 RM11_RS03070 2f2af573c04e6d898fdfbb788e9cf4c5 257 Gene3D G3DSA:3.20.20.140 1 254 1.4E-86 T 22-04-2016 RM11_RS03070 2f2af573c04e6d898fdfbb788e9cf4c5 257 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 254 2.2E-84 T 22-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 RM11_RS03070 2f2af573c04e6d898fdfbb788e9cf4c5 257 PANTHER PTHR10060:SF20 1 257 3.8E-109 T 22-04-2016 RM11_RS00490 ac96c9ac5e11ea6859601f8321fdfa07 333 SUPERFAMILY SSF118352 280 330 3.27E-13 T 22-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RM11_RS00490 ac96c9ac5e11ea6859601f8321fdfa07 333 Gene3D G3DSA:3.90.1280.10 281 330 9.9E-15 T 22-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RM11_RS00490 ac96c9ac5e11ea6859601f8321fdfa07 333 Gene3D G3DSA:3.55.30.10 19 276 6.1E-74 T 22-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RM11_RS00490 ac96c9ac5e11ea6859601f8321fdfa07 333 PANTHER PTHR30111:SF1 6 209 3.2E-47 T 22-04-2016 RM11_RS00490 ac96c9ac5e11ea6859601f8321fdfa07 333 PANTHER PTHR30111:SF1 227 330 3.2E-47 T 22-04-2016 RM11_RS00490 ac96c9ac5e11ea6859601f8321fdfa07 333 PIRSF PIRSF005261 7 333 2.6E-76 T 22-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RM11_RS00490 ac96c9ac5e11ea6859601f8321fdfa07 333 PANTHER PTHR30111 6 209 3.2E-47 T 22-04-2016 RM11_RS00490 ac96c9ac5e11ea6859601f8321fdfa07 333 PANTHER PTHR30111 227 330 3.2E-47 T 22-04-2016 RM11_RS00490 ac96c9ac5e11ea6859601f8321fdfa07 333 SUPERFAMILY SSF64397 19 284 8.63E-61 T 22-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RM11_RS00490 ac96c9ac5e11ea6859601f8321fdfa07 333 Pfam PF01430 Hsp33 protein 20 323 3.7E-74 T 22-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RM11_RS05390 98596e4e2d4c80a99b8923540ced4092 668 SUPERFAMILY SSF51261 442 629 3.09E-55 T 22-04-2016 IPR011055 Duplicated hybrid motif RM11_RS05390 98596e4e2d4c80a99b8923540ced4092 668 PANTHER PTHR21666 476 629 1.3E-40 T 22-04-2016 RM11_RS05390 98596e4e2d4c80a99b8923540ced4092 668 Pfam PF01551 Peptidase family M23 531 627 1.4E-28 T 22-04-2016 IPR016047 Peptidase M23 RM11_RS05390 98596e4e2d4c80a99b8923540ced4092 668 Gene3D G3DSA:2.70.70.10 484 629 1.8E-43 T 22-04-2016 RM11_RS00180 30bb8b109d289fac2148d67ed1f8c32c 461 Gene3D G3DSA:3.40.50.1950 54 240 3.8E-58 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 RM11_RS00180 30bb8b109d289fac2148d67ed1f8c32c 461 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 57 452 5.1E-118 T 22-04-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 RM11_RS00180 30bb8b109d289fac2148d67ed1f8c32c 461 SUPERFAMILY SSF102645 237 455 2.62E-67 T 22-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RM11_RS00180 30bb8b109d289fac2148d67ed1f8c32c 461 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 242 428 1.5E-62 T 22-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RM11_RS00180 30bb8b109d289fac2148d67ed1f8c32c 461 SUPERFAMILY SSF52507 54 233 2.49E-53 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 RM11_RS00180 30bb8b109d289fac2148d67ed1f8c32c 461 SUPERFAMILY SSF47598 2 42 3.71E-11 T 22-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RM11_RS00180 30bb8b109d289fac2148d67ed1f8c32c 461 Gene3D G3DSA:3.40.50.10300 241 455 3.1E-77 T 22-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RM11_RS00180 30bb8b109d289fac2148d67ed1f8c32c 461 Pfam PF02441 Flavoprotein 61 188 5.4E-32 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 RM11_RS02985 c2841d064916905f50f14cb8171531bd 409 Pfam PF11741 AMIN domain 51 141 2.9E-4 T 22-04-2016 IPR021731 AMIN domain RM11_RS02985 c2841d064916905f50f14cb8171531bd 409 PANTHER PTHR30404 152 404 1.4E-71 T 22-04-2016 RM11_RS02985 c2841d064916905f50f14cb8171531bd 409 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 182 396 7.6E-47 T 22-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RM11_RS02985 c2841d064916905f50f14cb8171531bd 409 SUPERFAMILY SSF53187 322 398 5.65E-51 T 22-04-2016 RM11_RS02985 c2841d064916905f50f14cb8171531bd 409 SUPERFAMILY SSF53187 180 276 5.65E-51 T 22-04-2016 RM11_RS02985 c2841d064916905f50f14cb8171531bd 409 Gene3D G3DSA:3.40.630.40 180 277 2.0E-55 T 22-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RM11_RS02985 c2841d064916905f50f14cb8171531bd 409 Gene3D G3DSA:3.40.630.40 323 399 2.0E-55 T 22-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RM11_RS02985 c2841d064916905f50f14cb8171531bd 409 SMART SM00646 242 396 4.8E-44 T 22-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RM11_RS02985 c2841d064916905f50f14cb8171531bd 409 PANTHER PTHR30404:SF0 152 404 1.4E-71 T 22-04-2016 RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 SUPERFAMILY SSF52540 39 75 1.07E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 SUPERFAMILY SSF52540 107 235 1.07E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 PANTHER PTHR11669:SF0 1 384 1.3E-154 T 22-04-2016 RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 PANTHER PTHR11669:SF0 416 569 1.3E-154 T 22-04-2016 RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 10 369 6.2E-127 T 22-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 Pfam PF13177 DNA polymerase III, delta subunit 27 189 6.5E-34 T 22-04-2016 RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 PANTHER PTHR11669 1 384 1.3E-154 T 22-04-2016 RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 PANTHER PTHR11669 416 569 1.3E-154 T 22-04-2016 RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 Gene3D G3DSA:1.10.8.60 177 253 6.2E-32 T 22-04-2016 RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 Gene3D G3DSA:3.40.50.300 6 176 1.5E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 Pfam PF12362 DNA polymerase III gamma and tau subunits C terminal 503 615 1.7E-29 T 22-04-2016 IPR022107 DNA polymerase III, subunit gamma/ tau, C-terminal RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 243 385 3.1E-48 T 22-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 Gene3D G3DSA:1.20.272.10 254 371 1.9E-21 T 22-04-2016 RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 SMART SM00382 44 190 2.9E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS01085 a3c4d5d6047abd7608062f304c6d42ce 640 SUPERFAMILY SSF48019 254 380 8.42E-28 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RM11_RS03580 a0c916b69743b696fc8bb3172050e316 172 PANTHER PTHR11560 1 172 2.6E-49 T 22-04-2016 RM11_RS03580 a0c916b69743b696fc8bb3172050e316 172 Pfam PF00466 Ribosomal protein L10 2 98 5.8E-24 T 22-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 RM11_RS03580 a0c916b69743b696fc8bb3172050e316 172 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 22-04-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03580 a0c916b69743b696fc8bb3172050e316 172 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 20 152 1.0E-4 T 22-04-2016 RM11_RS03580 a0c916b69743b696fc8bb3172050e316 172 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 24.687 T 22-04-2016 IPR022973 Ribosomal protein L10 RM11_RS03580 a0c916b69743b696fc8bb3172050e316 172 SUPERFAMILY SSF160369 2 168 2.22E-50 T 22-04-2016 RM11_RS00575 b584b0983ae295624918fd97a27753d9 221 SUPERFAMILY SSF81452 6 219 5.1E-51 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RM11_RS00575 b584b0983ae295624918fd97a27753d9 221 PANTHER PTHR11403:SF2 6 221 4.7E-83 T 22-04-2016 RM11_RS00575 b584b0983ae295624918fd97a27753d9 221 PANTHER PTHR11403 6 221 4.7E-83 T 22-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 RM11_RS00575 b584b0983ae295624918fd97a27753d9 221 Gene3D G3DSA:1.20.120.80 21 219 2.7E-46 T 22-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 RM11_RS00575 b584b0983ae295624918fd97a27753d9 221 Pfam PF00510 Cytochrome c oxidase subunit III 150 219 5.1E-8 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RM11_RS03365 2caba8b347523b4e7159ac754c7125c7 464 PIRSF PIRSF006060 1 464 1.0E-66 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RM11_RS03365 2caba8b347523b4e7159ac754c7125c7 464 PANTHER PTHR11785 3 442 1.1E-172 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RM11_RS03365 2caba8b347523b4e7159ac754c7125c7 464 PANTHER PTHR11785:SF351 3 442 1.1E-172 T 22-04-2016 RM11_RS03365 2caba8b347523b4e7159ac754c7125c7 464 Pfam PF00324 Amino acid permease 15 453 5.0E-96 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 RM11_RS03365 2caba8b347523b4e7159ac754c7125c7 464 ProSitePatterns PS00218 Amino acid permeases signature. 39 69 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RM11_RS02580 58b70608826fcc69a30af0645cbd2d88 269 SUPERFAMILY SSF53448 79 213 1.07E-5 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS02095 1184d99817a0ec56dd2e4a19228c4416 257 Hamap MF_00443 Thiazole synthase [thiG]. 1 255 40.389 T 22-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 RM11_RS02095 1184d99817a0ec56dd2e4a19228c4416 257 SUPERFAMILY SSF110399 1 239 8.76E-81 T 22-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 RM11_RS02095 1184d99817a0ec56dd2e4a19228c4416 257 PANTHER PTHR34266 1 252 4.2E-124 T 22-04-2016 RM11_RS02095 1184d99817a0ec56dd2e4a19228c4416 257 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 249 7.4E-104 T 22-04-2016 RM11_RS02095 1184d99817a0ec56dd2e4a19228c4416 257 Gene3D G3DSA:3.20.20.70 1 251 8.6E-50 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS06315 55f21ea5d9089c573a013beea5deb430 390 Pfam PF03743 Bacterial conjugation TrbI-like protein 199 381 1.1E-54 T 22-04-2016 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI RM11_RS06640 0130b6d3830f89d4363ec101d110f9fe 133 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 16 101 2.1E-23 T 22-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RM11_RS06640 0130b6d3830f89d4363ec101d110f9fe 133 Pfam PF03334 Na+/H+ antiporter subunit 16 96 4.5E-21 T 22-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RM11_RS06640 0130b6d3830f89d4363ec101d110f9fe 133 PANTHER PTHR34703 6 96 6.8E-16 T 22-04-2016 RM11_RS06640 0130b6d3830f89d4363ec101d110f9fe 133 PANTHER PTHR34703:SF1 6 96 6.8E-16 T 22-04-2016 RM11_RS01755 b7387dce6082188e678151211b64a79e 320 Pfam PF03481 Putative GTP-binding controlling metal-binding 196 316 7.7E-21 T 22-04-2016 IPR005145 Putative GTP-binding controlling metal-binding domain RM11_RS01755 b7387dce6082188e678151211b64a79e 320 SUPERFAMILY SSF55821 7 204 1.62E-55 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RM11_RS01755 b7387dce6082188e678151211b64a79e 320 Gene3D G3DSA:3.90.870.10 7 204 1.5E-63 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RM11_RS01755 b7387dce6082188e678151211b64a79e 320 PANTHER PTHR17490 7 320 3.5E-84 T 22-04-2016 RM11_RS01755 b7387dce6082188e678151211b64a79e 320 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 8 202 2.6E-45 T 22-04-2016 IPR006070 YrdC-like domain GO:0003725 RM11_RS01755 b7387dce6082188e678151211b64a79e 320 Pfam PF01300 Telomere recombination 17 192 8.9E-45 T 22-04-2016 IPR006070 YrdC-like domain GO:0003725 RM11_RS01755 b7387dce6082188e678151211b64a79e 320 PIRSF PIRSF004930 3 320 6.7E-99 T 22-04-2016 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 RM11_RS01755 b7387dce6082188e678151211b64a79e 320 PANTHER PTHR17490:SF3 7 320 3.5E-84 T 22-04-2016 RM11_RS04600 95139ca1f7b98ecfc38ca37e80cab1af 69 PIRSF PIRSF002599 1 68 8.0E-21 T 22-04-2016 IPR012156 Cold shock, CspA GO:0003676 RM11_RS04600 95139ca1f7b98ecfc38ca37e80cab1af 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 67 2.0E-24 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RM11_RS04600 95139ca1f7b98ecfc38ca37e80cab1af 69 SMART SM00357 3 69 1.7E-23 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 RM11_RS04600 95139ca1f7b98ecfc38ca37e80cab1af 69 PANTHER PTHR11544 1 69 1.1E-22 T 22-04-2016 RM11_RS04600 95139ca1f7b98ecfc38ca37e80cab1af 69 SUPERFAMILY SSF50249 1 67 2.79E-21 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS04600 95139ca1f7b98ecfc38ca37e80cab1af 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 22-04-2016 IPR019844 Cold-shock conserved site RM11_RS04600 95139ca1f7b98ecfc38ca37e80cab1af 69 PRINTS PR00050 Cold shock protein signature 4 19 1.8E-13 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RM11_RS04600 95139ca1f7b98ecfc38ca37e80cab1af 69 PRINTS PR00050 Cold shock protein signature 40 58 1.8E-13 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RM11_RS04600 95139ca1f7b98ecfc38ca37e80cab1af 69 PRINTS PR00050 Cold shock protein signature 25 34 1.8E-13 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RM11_RS04600 95139ca1f7b98ecfc38ca37e80cab1af 69 Gene3D G3DSA:2.40.50.140 1 65 9.7E-25 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RM11_RS00630 e316bbad9a1029892280c7995c7d61e8 371 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 61 360 2.4E-70 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RM11_RS00630 e316bbad9a1029892280c7995c7d61e8 371 PANTHER PTHR30469 52 371 1.1E-57 T 22-04-2016 RM11_RS00630 e316bbad9a1029892280c7995c7d61e8 371 Gene3D G3DSA:2.40.50.100 176 203 1.0E-12 T 22-04-2016 RM11_RS00630 e316bbad9a1029892280c7995c7d61e8 371 Gene3D G3DSA:2.40.50.100 83 115 1.0E-12 T 22-04-2016 RM11_RS00630 e316bbad9a1029892280c7995c7d61e8 371 SUPERFAMILY SSF111369 72 287 2.88E-29 T 22-04-2016 RM11_RS00630 e316bbad9a1029892280c7995c7d61e8 371 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 86 280 3.0E-25 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RM11_RS03965 2b9fe721af770e9e3ebef470f08756ff 261 Gene3D G3DSA:1.10.3580.10 91 258 3.1E-56 T 22-04-2016 IPR023335 Orthogonal Bundle domain in ATP12 RM11_RS03965 2b9fe721af770e9e3ebef470f08756ff 261 Pfam PF07542 ATP12 chaperone protein 32 150 5.9E-31 T 22-04-2016 IPR011419 ATP12, ATPase F1F0-assembly protein GO:0043461 RM11_RS03965 2b9fe721af770e9e3ebef470f08756ff 261 Gene3D G3DSA:3.30.2180.10 2 88 7.6E-23 T 22-04-2016 RM11_RS03965 2b9fe721af770e9e3ebef470f08756ff 261 SUPERFAMILY SSF160909 12 257 6.8E-86 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 SUPERFAMILY SSF100920 379 535 2.75E-63 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 SUPERFAMILY SSF53067 4 184 5.4E-68 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 Gene3D G3DSA:1.20.1270.10 528 598 1.9E-32 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PRINTS PR00301 70kDa heat shock protein signature 383 402 2.1E-82 T 22-04-2016 IPR013126 Heat shock protein 70 family RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PRINTS PR00301 70kDa heat shock protein signature 138 158 2.1E-82 T 22-04-2016 IPR013126 Heat shock protein 70 family RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PRINTS PR00301 70kDa heat shock protein signature 54 62 2.1E-82 T 22-04-2016 IPR013126 Heat shock protein 70 family RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PRINTS PR00301 70kDa heat shock protein signature 464 480 2.1E-82 T 22-04-2016 IPR013126 Heat shock protein 70 family RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PRINTS PR00301 70kDa heat shock protein signature 197 207 2.1E-82 T 22-04-2016 IPR013126 Heat shock protein 70 family RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PRINTS PR00301 70kDa heat shock protein signature 329 345 2.1E-82 T 22-04-2016 IPR013126 Heat shock protein 70 family RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PRINTS PR00301 70kDa heat shock protein signature 3 16 2.1E-82 T 22-04-2016 IPR013126 Heat shock protein 70 family RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PRINTS PR00301 70kDa heat shock protein signature 360 380 2.1E-82 T 22-04-2016 IPR013126 Heat shock protein 70 family RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PRINTS PR00301 70kDa heat shock protein signature 31 43 2.1E-82 T 22-04-2016 IPR013126 Heat shock protein 70 family RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 SUPERFAMILY SSF100934 502 601 4.32E-21 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 Gene3D G3DSA:3.30.420.40 192 224 3.6E-37 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 Gene3D G3DSA:3.30.420.40 314 356 3.6E-37 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 Gene3D G3DSA:3.90.640.10 225 310 3.8E-33 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 629 38.22 T 22-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 Gene3D G3DSA:3.30.30.30 53 104 7.7E-28 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 Gene3D G3DSA:3.30.420.40 119 191 7.7E-67 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 Gene3D G3DSA:3.30.420.40 4 52 7.7E-67 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 SUPERFAMILY SSF53067 186 377 9.88E-70 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PANTHER PTHR19375:SF173 2 633 0.0 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 Pfam PF00012 Hsp70 protein 4 599 9.7E-284 T 22-04-2016 IPR013126 Heat shock protein 70 family RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 PANTHER PTHR19375 2 633 0.0 T 22-04-2016 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 598 4.8E-304 T 22-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 Gene3D G3DSA:2.60.34.10 385 527 2.0E-74 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RM11_RS00305 f644a2c954d9b7824a3263e47494adca 634 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site RM11_RS01470 dcb51318762b6b4ce1ef2be8b1d49631 153 SUPERFAMILY SSF143975 2 67 2.48E-6 T 22-04-2016 RM11_RS01470 dcb51318762b6b4ce1ef2be8b1d49631 153 PANTHER PTHR21000 1 145 2.5E-42 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS01470 dcb51318762b6b4ce1ef2be8b1d49631 153 Pfam PF00920 Dehydratase family 2 143 8.6E-23 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RM11_RS01470 dcb51318762b6b4ce1ef2be8b1d49631 153 SUPERFAMILY SSF52016 68 146 3.69E-18 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RM11_RS01470 dcb51318762b6b4ce1ef2be8b1d49631 153 PANTHER PTHR21000:SF9 1 145 2.5E-42 T 22-04-2016 RM11_RS04565 66400b1f7d23a1051a3b2cce8cfbcb79 405 PANTHER PTHR30414:SF0 9 405 3.7E-155 T 22-04-2016 IPR030192 Miniconductance mechanosensitive channel YbdG GO:0008381|GO:0016021|GO:0071470 RM11_RS04565 66400b1f7d23a1051a3b2cce8cfbcb79 405 PANTHER PTHR30414 9 405 3.7E-155 T 22-04-2016 RM11_RS04565 66400b1f7d23a1051a3b2cce8cfbcb79 405 SUPERFAMILY SSF50182 174 241 2.68E-12 T 22-04-2016 IPR010920 LSM domain RM11_RS04565 66400b1f7d23a1051a3b2cce8cfbcb79 405 Pfam PF00924 Mechanosensitive ion channel 137 387 6.6E-47 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RM11_RS04565 66400b1f7d23a1051a3b2cce8cfbcb79 405 Gene3D G3DSA:2.30.30.60 191 241 1.0E-9 T 22-04-2016 RM11_RS00960 35fc8397f189f79758f18c9d20065bdf 193 SUPERFAMILY SSF56235 9 182 7.12E-55 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RM11_RS00960 35fc8397f189f79758f18c9d20065bdf 193 Gene3D G3DSA:3.60.20.10 12 183 2.8E-83 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RM11_RS00960 35fc8397f189f79758f18c9d20065bdf 193 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 12 182 4.3E-81 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RM11_RS00960 35fc8397f189f79758f18c9d20065bdf 193 PIRSF PIRSF039093 5 185 5.2E-81 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RM11_RS00960 35fc8397f189f79758f18c9d20065bdf 193 PANTHER PTHR32194 11 191 3.1E-116 T 22-04-2016 RM11_RS00960 35fc8397f189f79758f18c9d20065bdf 193 Pfam PF00227 Proteasome subunit 10 181 2.4E-20 T 22-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 RM11_RS00960 35fc8397f189f79758f18c9d20065bdf 193 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 11 182 39.466 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RM11_RS04680 5f51531665d16c646e207dc9665ddde1 300 Gene3D G3DSA:3.60.21.10 5 270 1.4E-34 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like RM11_RS04680 5f51531665d16c646e207dc9665ddde1 300 PANTHER PTHR12905 58 231 1.1E-20 T 22-04-2016 RM11_RS04680 5f51531665d16c646e207dc9665ddde1 300 PANTHER PTHR12905 5 26 1.1E-20 T 22-04-2016 RM11_RS04680 5f51531665d16c646e207dc9665ddde1 300 SUPERFAMILY SSF56300 8 270 1.31E-39 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like RM11_RS04680 5f51531665d16c646e207dc9665ddde1 300 Pfam PF00149 Calcineurin-like phosphoesterase 8 230 2.1E-14 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RM11_RS04680 5f51531665d16c646e207dc9665ddde1 300 PANTHER PTHR12905:SF17 58 231 1.1E-20 T 22-04-2016 RM11_RS04680 5f51531665d16c646e207dc9665ddde1 300 PANTHER PTHR12905:SF17 5 26 1.1E-20 T 22-04-2016 RM11_RS01200 81ea5bc68cb26b87c62e294201e0a896 453 PANTHER PTHR34001 1 98 4.4E-19 T 22-04-2016 RM11_RS01200 81ea5bc68cb26b87c62e294201e0a896 453 PANTHER PTHR34001 306 429 4.4E-19 T 22-04-2016 RM11_RS01200 81ea5bc68cb26b87c62e294201e0a896 453 Gene3D G3DSA:2.40.160.20 44 122 6.4E-44 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS01200 81ea5bc68cb26b87c62e294201e0a896 453 Gene3D G3DSA:2.40.160.20 341 453 6.4E-44 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS01200 81ea5bc68cb26b87c62e294201e0a896 453 Pfam PF13505 Outer membrane protein beta-barrel domain 345 453 2.5E-8 T 22-04-2016 IPR027385 Outer membrane protein beta-barrel RM11_RS01200 81ea5bc68cb26b87c62e294201e0a896 453 SUPERFAMILY SSF56925 335 453 1.44E-19 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RM11_RS03875 4fe4b84973f6b5083dc65a16fc86b0c1 328 PANTHER PTHR30447:SF0 4 322 2.9E-159 T 22-04-2016 RM11_RS03875 4fe4b84973f6b5083dc65a16fc86b0c1 328 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 12 322 3.5E-105 T 22-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RM11_RS03875 4fe4b84973f6b5083dc65a16fc86b0c1 328 PANTHER PTHR30447 4 322 2.9E-159 T 22-04-2016 RM11_RS03875 4fe4b84973f6b5083dc65a16fc86b0c1 328 SUPERFAMILY SSF56655 12 322 8.7E-104 T 22-04-2016 RM11_RS03875 4fe4b84973f6b5083dc65a16fc86b0c1 328 Gene3D G3DSA:3.30.540.10 184 322 1.4E-38 T 22-04-2016 RM11_RS03875 4fe4b84973f6b5083dc65a16fc86b0c1 328 Gene3D G3DSA:3.30.540.10 11 183 7.2E-65 T 22-04-2016 RM11_RS03875 4fe4b84973f6b5083dc65a16fc86b0c1 328 PIRSF PIRSF004532 11 328 5.0E-141 T 22-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RM11_RS03875 4fe4b84973f6b5083dc65a16fc86b0c1 328 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 13 321 9.9E-138 T 22-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RM11_RS05080 9c25fd3f0142a1d04d1e4299d0545677 246 PANTHER PTHR35005:SF1 8 228 1.1E-31 T 22-04-2016 RM11_RS05080 9c25fd3f0142a1d04d1e4299d0545677 246 Pfam PF02633 Creatinine amidohydrolase 8 229 1.9E-45 T 22-04-2016 IPR003785 Creatininase/formamide hydrolase KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 RM11_RS05080 9c25fd3f0142a1d04d1e4299d0545677 246 Gene3D G3DSA:3.40.50.10310 8 240 1.4E-58 T 22-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 RM11_RS05080 9c25fd3f0142a1d04d1e4299d0545677 246 SUPERFAMILY SSF102215 4 240 1.44E-62 T 22-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 RM11_RS05080 9c25fd3f0142a1d04d1e4299d0545677 246 PANTHER PTHR35005 8 228 1.1E-31 T 22-04-2016 RM11_RS06460 617bfacb7bdab14729fab2fcc4c8578e 352 Pfam PF09898 Uncharacterized protein conserved in bacteria (DUF2125) 5 349 3.5E-21 T 22-04-2016 IPR018666 Protein of unknown function DUF2125 RM11_RS05655 a33e8a9824fb887702d9efcfd4611bff 222 Pfam PF09588 YqaJ-like viral recombinase domain 13 154 5.0E-15 T 22-04-2016 IPR019080 YqaJ viral recombinase RM11_RS05655 a33e8a9824fb887702d9efcfd4611bff 222 Gene3D G3DSA:3.90.320.10 3 201 2.1E-54 T 22-04-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 RM11_RS05655 a33e8a9824fb887702d9efcfd4611bff 222 SUPERFAMILY SSF52980 3 200 1.93E-44 T 22-04-2016 IPR011335 Restriction endonuclease type II-like RM11_RS04720 2c83ac0c84d6b2dc6291028fa2ca6323 198 Pfam PF06577 Protein of unknown function (DUF1134) 41 198 4.4E-69 T 22-04-2016 IPR008325 Uncharacterised conserved protein UCP033924 RM11_RS04720 2c83ac0c84d6b2dc6291028fa2ca6323 198 PIRSF PIRSF033924 3 198 1.8E-86 T 22-04-2016 IPR008325 Uncharacterised conserved protein UCP033924 RM11_RS02900 f2ff2b2363e75a57f7c3286c0b75031e 348 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 226 239 - T 22-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RM11_RS02900 f2ff2b2363e75a57f7c3286c0b75031e 348 Pfam PF00146 NADH dehydrogenase 19 339 3.6E-121 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RM11_RS02900 f2ff2b2363e75a57f7c3286c0b75031e 348 PANTHER PTHR11432 8 342 3.4E-161 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RM11_RS02900 f2ff2b2363e75a57f7c3286c0b75031e 348 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 11 345 24.316 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RM11_RS02900 f2ff2b2363e75a57f7c3286c0b75031e 348 PANTHER PTHR11432:SF3 8 342 3.4E-161 T 22-04-2016 RM11_RS03250 9f04c61f2c21178721bac5cc53daeee1 185 Gene3D G3DSA:2.40.50.90 58 170 7.0E-25 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RM11_RS03250 9f04c61f2c21178721bac5cc53daeee1 185 Pfam PF00565 Staphylococcal nuclease homologue 71 168 3.6E-17 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RM11_RS03250 9f04c61f2c21178721bac5cc53daeee1 185 PANTHER PTHR12302:SF0 58 183 1.6E-28 T 22-04-2016 RM11_RS03250 9f04c61f2c21178721bac5cc53daeee1 185 PANTHER PTHR12302 58 183 1.6E-28 T 22-04-2016 RM11_RS03250 9f04c61f2c21178721bac5cc53daeee1 185 SMART SM00318 48 169 2.0E-20 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RM11_RS03250 9f04c61f2c21178721bac5cc53daeee1 185 SUPERFAMILY SSF50199 58 174 3.14E-31 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RM11_RS01225 988adebf274562980c1c7ade464a5f77 185 PANTHER PTHR18895:SF60 1 184 9.0E-30 T 22-04-2016 RM11_RS01225 988adebf274562980c1c7ade464a5f77 185 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 182 7.8E-38 T 22-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS01225 988adebf274562980c1c7ade464a5f77 185 SUPERFAMILY SSF53335 1 181 7.81E-37 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01225 988adebf274562980c1c7ade464a5f77 185 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 119 125 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RM11_RS01225 988adebf274562980c1c7ade464a5f77 185 Gene3D G3DSA:3.40.50.150 1 183 5.7E-47 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01225 988adebf274562980c1c7ade464a5f77 185 Pfam PF03602 Conserved hypothetical protein 95 1 182 1.1E-45 T 22-04-2016 RM11_RS01225 988adebf274562980c1c7ade464a5f77 185 PIRSF PIRSF004553 1 185 1.1E-45 T 22-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RM11_RS01225 988adebf274562980c1c7ade464a5f77 185 PANTHER PTHR18895 1 184 9.0E-30 T 22-04-2016 RM11_RS02810 ddd7ffc0708cd68cadfa503497b12080 117 PANTHER PTHR33383 24 93 1.3E-29 T 22-04-2016 RM11_RS02810 ddd7ffc0708cd68cadfa503497b12080 117 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 40 92 2.0E-26 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RM11_RS02810 ddd7ffc0708cd68cadfa503497b12080 117 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 31 96 2.2E-23 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RM11_RS02810 ddd7ffc0708cd68cadfa503497b12080 117 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 25 93 21.17 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RM11_RS02810 ddd7ffc0708cd68cadfa503497b12080 117 Pfam PF01809 Haemolytic domain 30 92 3.0E-25 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RM11_RS02810 ddd7ffc0708cd68cadfa503497b12080 117 SMART SM01234 25 92 3.7E-34 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 Gene3D G3DSA:3.40.50.150 16 269 1.2E-78 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 204 221 5.0E-40 T 22-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 223 241 5.0E-40 T 22-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 39 53 5.0E-40 T 22-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 88 108 5.0E-40 T 22-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 246 266 5.0E-40 T 22-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 PANTHER PTHR13370:SF8 20 285 8.7E-59 T 22-04-2016 RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 Pfam PF01555 DNA methylase 40 262 7.8E-57 T 22-04-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 PANTHER PTHR13370 20 285 8.7E-59 T 22-04-2016 RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 SUPERFAMILY SSF53335 18 268 1.35E-72 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS01910 c43c56a38040828e2f1cbd813b2d33dc 378 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 43 49 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 45 62 - T 22-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 Gene3D G3DSA:2.40.100.10 8 165 1.6E-48 T 22-04-2016 IPR029000 Cyclophilin-like domain RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 SUPERFAMILY SSF50891 7 167 2.34E-49 T 22-04-2016 IPR029000 Cyclophilin-like domain RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 PANTHER PTHR11071 12 67 6.3E-50 T 22-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 PANTHER PTHR11071 83 148 6.3E-50 T 22-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 PIRSF PIRSF001467 3 169 1.1E-30 T 22-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 145 1.2E-14 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 1.2E-14 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 50 62 1.2E-14 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 129 1.2E-14 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RM11_RS03920 43a48b8f76c7e6bbfd158d303569a80a 170 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 164 2.0E-47 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RM11_RS04825 7f11d504bd75eee0f0864149ece05992 122 Hamap MF_00048 UPF0102 protein YraN [yraN]. 9 118 18.296 T 22-04-2016 IPR003509 Uncharacterised protein family UPF0102 RM11_RS04825 7f11d504bd75eee0f0864149ece05992 122 PANTHER PTHR34039 5 122 4.5E-23 T 22-04-2016 RM11_RS04825 7f11d504bd75eee0f0864149ece05992 122 SUPERFAMILY SSF52980 11 118 6.84E-22 T 22-04-2016 IPR011335 Restriction endonuclease type II-like RM11_RS04825 7f11d504bd75eee0f0864149ece05992 122 PANTHER PTHR34039:SF1 5 122 4.5E-23 T 22-04-2016 RM11_RS04825 7f11d504bd75eee0f0864149ece05992 122 Gene3D G3DSA:3.40.1350.10 16 120 1.5E-27 T 22-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 RM11_RS04825 7f11d504bd75eee0f0864149ece05992 122 Pfam PF02021 Uncharacterised protein family UPF0102 16 105 1.7E-17 T 22-04-2016 IPR003509 Uncharacterised protein family UPF0102 RM11_RS06130 ca806f38be2ecec728b228139458ee27 229 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 17 227 3.0E-50 T 22-04-2016 IPR011078 Uncharacterised protein family UPF0001 RM11_RS06130 ca806f38be2ecec728b228139458ee27 229 Pfam PF01168 Alanine racemase, N-terminal domain 28 227 6.5E-21 T 22-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RM11_RS06130 ca806f38be2ecec728b228139458ee27 229 PIRSF PIRSF004848 6 229 6.3E-60 T 22-04-2016 IPR011078 Uncharacterised protein family UPF0001 RM11_RS06130 ca806f38be2ecec728b228139458ee27 229 Gene3D G3DSA:3.20.20.10 14 228 1.2E-68 T 22-04-2016 IPR029066 PLP-binding barrel RM11_RS06130 ca806f38be2ecec728b228139458ee27 229 PANTHER PTHR10146 12 227 6.2E-72 T 22-04-2016 IPR011078 Uncharacterised protein family UPF0001 RM11_RS06130 ca806f38be2ecec728b228139458ee27 229 SUPERFAMILY SSF51419 12 225 1.23E-65 T 22-04-2016 IPR029066 PLP-binding barrel RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 PANTHER PTHR23429:SF0 14 489 3.3E-192 T 22-04-2016 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 PANTHER PTHR23429 14 489 3.3E-192 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 PIRSF PIRSF000110 1 491 5.5E-163 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 179 185 - T 22-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 SUPERFAMILY SSF55347 184 488 3.92E-110 T 22-04-2016 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 10 489 81.251 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 14 189 5.0E-52 T 22-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 12 489 3.3E-169 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 Gene3D G3DSA:3.30.360.10 189 487 2.4E-118 T 22-04-2016 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 169 197 2.6E-44 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 145 158 2.6E-44 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 239 255 2.6E-44 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 221 238 2.6E-44 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 329 355 2.6E-44 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 Gene3D G3DSA:3.40.50.720 9 188 3.9E-55 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 191 487 9.2E-112 T 22-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RM11_RS01450 6aeb29b9a95fe302bf421f8ecdea2b55 491 SUPERFAMILY SSF51735 3 192 6.3E-53 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04425 9684d75b7d1d9cfc84fca3c90a7502dd 378 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 188 339 1.8E-30 T 22-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS04425 9684d75b7d1d9cfc84fca3c90a7502dd 378 Gene3D G3DSA:3.40.50.2000 7 62 8.6E-6 T 22-04-2016 RM11_RS04425 9684d75b7d1d9cfc84fca3c90a7502dd 378 PANTHER PTHR21015 7 373 2.2E-73 T 22-04-2016 RM11_RS04425 9684d75b7d1d9cfc84fca3c90a7502dd 378 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 7 360 28.914 T 22-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS04425 9684d75b7d1d9cfc84fca3c90a7502dd 378 Gene3D G3DSA:3.40.50.2000 156 341 4.1E-43 T 22-04-2016 RM11_RS04425 9684d75b7d1d9cfc84fca3c90a7502dd 378 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 7 142 1.7E-29 T 22-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS04425 9684d75b7d1d9cfc84fca3c90a7502dd 378 SUPERFAMILY SSF53756 6 360 4.4E-91 T 22-04-2016 RM11_RS04425 9684d75b7d1d9cfc84fca3c90a7502dd 378 PANTHER PTHR21015:SF22 7 373 2.2E-73 T 22-04-2016 RM11_RS01890 9fa62f83130c0f2df413c118ea34b683 74 Gene3D G3DSA:3.90.1380.10 26 73 5.6E-10 T 22-04-2016 IPR029144 Threonine synthase, N-terminal RM11_RS01890 9fa62f83130c0f2df413c118ea34b683 74 Pfam PF14821 Threonine synthase N terminus 28 73 3.5E-9 T 22-04-2016 IPR029144 Threonine synthase, N-terminal RM11_RS01890 9fa62f83130c0f2df413c118ea34b683 74 SUPERFAMILY SSF53686 27 73 2.49E-6 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RM11_RS05225 c11f89e08ad2af6590c33c675359b967 222 Pfam PF04335 VirB8 protein 13 219 2.4E-51 T 22-04-2016 IPR007430 Bacterial virulence protein VirB8 GO:0016020 RM11_RS05225 c11f89e08ad2af6590c33c675359b967 222 PIRSF PIRSF003299 1 222 4.5E-71 T 22-04-2016 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 RM11_RS05225 c11f89e08ad2af6590c33c675359b967 222 SUPERFAMILY SSF54427 84 221 4.07E-38 T 22-04-2016 IPR032710 NTF2-like domain RM11_RS02705 559abf7fdd9b1e4c83938cba5598908b 94 SUPERFAMILY SSF47336 4 63 3.4E-14 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain RM11_RS02705 559abf7fdd9b1e4c83938cba5598908b 94 Pfam PF00550 Phosphopantetheine attachment site 6 59 2.3E-9 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain RM11_RS02705 559abf7fdd9b1e4c83938cba5598908b 94 Gene3D G3DSA:1.10.1200.10 3 89 4.5E-20 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain RM11_RS00405 a1f7d80e1597c8626e3f515a72fbbeb3 275 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS00405 a1f7d80e1597c8626e3f515a72fbbeb3 275 Gene3D G3DSA:3.40.50.300 7 238 9.1E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00405 a1f7d80e1597c8626e3f515a72fbbeb3 275 Pfam PF00005 ABC transporter 22 169 4.8E-26 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS00405 a1f7d80e1597c8626e3f515a72fbbeb3 275 SUPERFAMILY SSF52540 6 234 5.23E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00405 a1f7d80e1597c8626e3f515a72fbbeb3 275 SMART SM00382 31 217 8.4E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS02355 6d65796cda849553872d4b20ce108877 318 Gene3D G3DSA:3.10.50.40 173 275 1.7E-4 T 22-04-2016 RM11_RS02355 6d65796cda849553872d4b20ce108877 318 SUPERFAMILY SSF109998 38 204 3.14E-31 T 22-04-2016 IPR027304 Trigger factor/SurA domain RM11_RS02355 6d65796cda849553872d4b20ce108877 318 Pfam PF13624 SurA N-terminal domain 1 143 2.6E-10 T 22-04-2016 RM11_RS04280 5b96c72b00f1ef566df7117e126045c6 244 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 244 82.988 T 22-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RM11_RS04280 5b96c72b00f1ef566df7117e126045c6 244 PANTHER PTHR30456 1 243 3.8E-84 T 22-04-2016 RM11_RS04280 5b96c72b00f1ef566df7117e126045c6 244 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 4 242 9.2E-77 T 22-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RM11_RS04280 5b96c72b00f1ef566df7117e126045c6 244 PANTHER PTHR30456:SF0 1 243 3.8E-84 T 22-04-2016 RM11_RS04280 5b96c72b00f1ef566df7117e126045c6 244 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 4 243 3.6E-60 T 22-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RM11_RS04280 5b96c72b00f1ef566df7117e126045c6 244 SUPERFAMILY SSF63892 2 243 9.15E-74 T 22-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RM11_RS04280 5b96c72b00f1ef566df7117e126045c6 244 Gene3D G3DSA:3.20.20.70 2 243 1.0E-80 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 Gene3D G3DSA:3.30.1390.10 51 123 3.7E-35 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 SUPERFAMILY SSF48300 4 59 7.85E-17 T 22-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 SUPERFAMILY SSF54736 52 123 4.36E-26 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 PANTHER PTHR24089 5 120 1.1E-18 T 22-04-2016 RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 57 123 1.6E-31 T 22-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 PANTHER PTHR24089:SF272 5 120 1.1E-18 T 22-04-2016 RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 Gene3D G3DSA:1.20.5.710 6 50 5.8E-16 T 22-04-2016 RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 51 7.5E-19 T 22-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 123 24.552 T 22-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 58 123 1.0E-29 T 22-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RM11_RS03575 5e301a44200239fb79f11eca2162015d 123 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 123 1.7E-47 T 22-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03230 faadc7be4884b0cf16a3f45e0b7a4ec6 404 Pfam PF02481 DNA recombination-mediator protein A 81 284 3.6E-71 T 22-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 RM11_RS03230 faadc7be4884b0cf16a3f45e0b7a4ec6 404 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 80 294 8.1E-69 T 22-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 RM11_RS03230 faadc7be4884b0cf16a3f45e0b7a4ec6 404 Gene3D G3DSA:3.40.50.450 120 264 2.7E-9 T 22-04-2016 RM11_RS03230 faadc7be4884b0cf16a3f45e0b7a4ec6 404 PANTHER PTHR32039 22 390 1.5E-102 T 22-04-2016 RM11_RS03230 faadc7be4884b0cf16a3f45e0b7a4ec6 404 SUPERFAMILY SSF102405 90 294 6.26E-38 T 22-04-2016 RM11_RS03230 faadc7be4884b0cf16a3f45e0b7a4ec6 404 PANTHER PTHR32039:SF8 22 390 1.5E-102 T 22-04-2016 RM11_RS04045 b635d6e02234c05d5188686dce0183d6 120 PANTHER PTHR12899 9 120 3.1E-45 T 22-04-2016 RM11_RS04045 b635d6e02234c05d5188686dce0183d6 120 Gene3D G3DSA:3.30.420.100 24 120 8.0E-40 T 22-04-2016 RM11_RS04045 b635d6e02234c05d5188686dce0183d6 120 SUPERFAMILY SSF53137 9 118 9.59E-52 T 22-04-2016 RM11_RS04045 b635d6e02234c05d5188686dce0183d6 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 8 120 5.8E-41 T 22-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04045 b635d6e02234c05d5188686dce0183d6 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 120 28.663 T 22-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04045 b635d6e02234c05d5188686dce0183d6 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 6 120 6.6E-44 T 22-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS03040 bdf148eea46711d04bad5a5f1d9f710f 134 Pfam PF01883 Domain of unknown function DUF59 39 110 4.1E-21 T 22-04-2016 IPR002744 Domain of unknown function DUF59 RM11_RS03040 bdf148eea46711d04bad5a5f1d9f710f 134 PANTHER PTHR13696 26 131 1.7E-14 T 22-04-2016 RM11_RS03040 bdf148eea46711d04bad5a5f1d9f710f 134 TIGRFAM TIGR02945 SUF_assoc: FeS assembly SUF system protein 37 133 1.8E-46 T 22-04-2016 IPR014291 SUF system FeS cluster assembly associated RM11_RS03040 bdf148eea46711d04bad5a5f1d9f710f 134 SUPERFAMILY SSF117916 37 132 9.16E-32 T 22-04-2016 RM11_RS04115 34819317d59b651cdc5ce5ef1f50ab42 97 SUPERFAMILY SSF54189 5 93 1.12E-32 T 22-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS04115 34819317d59b651cdc5ce5ef1f50ab42 97 Pfam PF00276 Ribosomal protein L23 8 93 1.1E-31 T 22-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RM11_RS04115 34819317d59b651cdc5ce5ef1f50ab42 97 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 96 21.256 T 22-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RM11_RS04115 34819317d59b651cdc5ce5ef1f50ab42 97 PANTHER PTHR11620 4 93 1.4E-34 T 22-04-2016 RM11_RS04115 34819317d59b651cdc5ce5ef1f50ab42 97 Gene3D G3DSA:3.30.70.330 5 96 9.6E-37 T 22-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 RM11_RS06530 e1369de2253a14a23d408d02ec94946e 234 SUPERFAMILY SSF52833 87 229 9.64E-33 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS06530 e1369de2253a14a23d408d02ec94946e 234 ProSitePatterns PS00194 Thioredoxin family active site. 114 132 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RM11_RS06530 e1369de2253a14a23d408d02ec94946e 234 PANTHER PTHR10681:SF68 89 232 2.2E-17 T 22-04-2016 RM11_RS06530 e1369de2253a14a23d408d02ec94946e 234 Gene3D G3DSA:3.40.30.10 14 43 3.3E-35 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS06530 e1369de2253a14a23d408d02ec94946e 234 Gene3D G3DSA:3.40.30.10 84 232 3.3E-35 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS06530 e1369de2253a14a23d408d02ec94946e 234 Pfam PF08534 Redoxin 98 225 9.7E-17 T 22-04-2016 IPR013740 Redoxin GO:0016491 RM11_RS06530 e1369de2253a14a23d408d02ec94946e 234 PANTHER PTHR10681 89 232 2.2E-17 T 22-04-2016 RM11_RS02885 5476948acd691eeb96da4b381c51dce7 216 PIRSF PIRSF000216 2 216 3.6E-72 T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RM11_RS02885 5476948acd691eeb96da4b381c51dce7 216 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 26 172 8.6E-54 T 22-04-2016 RM11_RS02885 5476948acd691eeb96da4b381c51dce7 216 Gene3D G3DSA:3.40.30.10 93 174 2.6E-12 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS02885 5476948acd691eeb96da4b381c51dce7 216 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 25 173 1.5E-57 T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RM11_RS02885 5476948acd691eeb96da4b381c51dce7 216 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 130 148 - T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RM11_RS02885 5476948acd691eeb96da4b381c51dce7 216 SUPERFAMILY SSF52833 18 176 6.86E-50 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS06030 be4f3fe0d4c4c3b08c5ea9252035c422 481 PANTHER PTHR22726:SF9 50 247 1.0E-38 T 22-04-2016 RM11_RS06030 be4f3fe0d4c4c3b08c5ea9252035c422 481 Gene3D G3DSA:3.30.2010.10 64 146 4.8E-16 T 22-04-2016 RM11_RS06030 be4f3fe0d4c4c3b08c5ea9252035c422 481 PANTHER PTHR22726 50 247 1.0E-38 T 22-04-2016 RM11_RS06030 be4f3fe0d4c4c3b08c5ea9252035c422 481 Pfam PF01435 Peptidase family M48 66 247 1.7E-26 T 22-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RM11_RS03185 2b870a7659458c954df0b9f975b17144 260 PANTHER PTHR24220:SF358 128 255 3.8E-121 T 22-04-2016 RM11_RS03185 2b870a7659458c954df0b9f975b17144 260 PANTHER PTHR24220:SF358 7 112 3.8E-121 T 22-04-2016 RM11_RS03185 2b870a7659458c954df0b9f975b17144 260 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 233 253 4.5E-12 T 22-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RM11_RS03185 2b870a7659458c954df0b9f975b17144 260 SUPERFAMILY SSF52540 4 253 1.81E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03185 2b870a7659458c954df0b9f975b17144 260 Pfam PF00005 ABC transporter 21 181 5.6E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS03185 2b870a7659458c954df0b9f975b17144 260 Gene3D G3DSA:3.40.50.300 2 251 1.2E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03185 2b870a7659458c954df0b9f975b17144 260 SMART SM00382 30 231 2.2E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS03185 2b870a7659458c954df0b9f975b17144 260 PANTHER PTHR24220 128 255 3.8E-121 T 22-04-2016 RM11_RS03185 2b870a7659458c954df0b9f975b17144 260 PANTHER PTHR24220 7 112 3.8E-121 T 22-04-2016 RM11_RS04870 8c86a49dadc7c9e02d73626450dcad46 206 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 2 204 36.422 T 22-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 RM11_RS04870 8c86a49dadc7c9e02d73626450dcad46 206 PANTHER PTHR11931 4 195 4.3E-106 T 22-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 RM11_RS04870 8c86a49dadc7c9e02d73626450dcad46 206 SUPERFAMILY SSF53254 1 196 1.96E-66 T 22-04-2016 IPR029033 Histidine phosphatase superfamily RM11_RS04870 8c86a49dadc7c9e02d73626450dcad46 206 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 4 124 7.6E-51 T 22-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 RM11_RS04870 8c86a49dadc7c9e02d73626450dcad46 206 SMART SM00855 4 165 1.4E-23 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RM11_RS04870 8c86a49dadc7c9e02d73626450dcad46 206 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 179 1.5E-42 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RM11_RS04870 8c86a49dadc7c9e02d73626450dcad46 206 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 22-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 RM11_RS04870 8c86a49dadc7c9e02d73626450dcad46 206 PIRSF PIRSF000709 1 192 1.7E-11 T 22-04-2016 RM11_RS04870 8c86a49dadc7c9e02d73626450dcad46 206 Gene3D G3DSA:3.40.50.1240 3 196 5.7E-76 T 22-04-2016 IPR029033 Histidine phosphatase superfamily RM11_RS06620 9ae6d445c9f3c4aa274aa3cd8bcc5d78 377 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 4 371 40.036 T 22-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RM11_RS06620 9ae6d445c9f3c4aa274aa3cd8bcc5d78 377 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 15 367 1.5E-108 T 22-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RM11_RS06620 9ae6d445c9f3c4aa274aa3cd8bcc5d78 377 Pfam PF01761 3-dehydroquinate synthase 75 338 2.7E-100 T 22-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RM11_RS06620 9ae6d445c9f3c4aa274aa3cd8bcc5d78 377 SUPERFAMILY SSF56796 6 370 1.18E-105 T 22-04-2016 RM11_RS06620 9ae6d445c9f3c4aa274aa3cd8bcc5d78 377 PANTHER PTHR21090 1 377 3.3E-147 T 22-04-2016 RM11_RS06620 9ae6d445c9f3c4aa274aa3cd8bcc5d78 377 Gene3D G3DSA:1.20.1090.10 181 370 9.5E-66 T 22-04-2016 RM11_RS06620 9ae6d445c9f3c4aa274aa3cd8bcc5d78 377 Gene3D G3DSA:3.40.50.1970 4 180 5.1E-62 T 22-04-2016 RM11_RS06620 9ae6d445c9f3c4aa274aa3cd8bcc5d78 377 PIRSF PIRSF001455 13 376 3.3E-105 T 22-04-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RM11_RS04715 eec2343fe7d1e20765b26dd8b3dede09 212 Pfam PF10090 Histidine phosphotransferase 29 206 2.3E-47 T 22-04-2016 IPR018762 Histidine phosphotransferase RM11_RS04440 e442dc718878a6ea9fbef6362db8f9c4 356 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 22-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS04440 e442dc718878a6ea9fbef6362db8f9c4 356 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 24 354 24.224 T 22-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS04440 e442dc718878a6ea9fbef6362db8f9c4 356 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 356 3.4E-125 T 22-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS04440 e442dc718878a6ea9fbef6362db8f9c4 356 PANTHER PTHR22926 1 356 2.5E-147 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS04440 e442dc718878a6ea9fbef6362db8f9c4 356 Pfam PF00953 Glycosyl transferase family 4 99 279 4.2E-34 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS04440 e442dc718878a6ea9fbef6362db8f9c4 356 PANTHER PTHR22926:SF5 1 356 2.5E-147 T 22-04-2016 RM11_RS04440 e442dc718878a6ea9fbef6362db8f9c4 356 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 1.8E-5 T 22-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS04440 e442dc718878a6ea9fbef6362db8f9c4 356 ProSitePatterns PS01348 MraY family signature 2. 185 196 - T 22-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RM11_RS06490 ac210340e92f38859ddb210fb8cb98ee 142 SUPERFAMILY SSF88697 1 136 7.04E-56 T 22-04-2016 IPR015947 PUA-like domain RM11_RS06490 ac210340e92f38859ddb210fb8cb98ee 142 PANTHER PTHR14087 1 136 2.7E-63 T 22-04-2016 RM11_RS06490 ac210340e92f38859ddb210fb8cb98ee 142 Gene3D G3DSA:3.10.590.10 1 131 2.0E-28 T 22-04-2016 IPR002740 EVE domain RM11_RS06490 ac210340e92f38859ddb210fb8cb98ee 142 Pfam PF01878 EVE domain 2 132 2.5E-45 T 22-04-2016 IPR002740 EVE domain RM11_RS05920 d0141854cc1a1f9e04f7d24998484825 380 PIRSF PIRSF028704 2 377 1.4E-92 T 22-04-2016 IPR014550 Uncharacterised conserved protein UCP028704, OpgC RM11_RS05920 d0141854cc1a1f9e04f7d24998484825 380 Pfam PF10129 OpgC protein 16 366 5.0E-88 T 22-04-2016 IPR014550 Uncharacterised conserved protein UCP028704, OpgC RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 Pfam PF00216 Bacterial DNA-binding protein 3 91 9.9E-30 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 PANTHER PTHR33175:SF5 1 92 2.0E-41 T 22-04-2016 RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 PANTHER PTHR33175 1 92 2.0E-41 T 22-04-2016 RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 4.5E-17 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 4.5E-17 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 4.5E-17 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 SUPERFAMILY SSF47729 3 91 2.94E-29 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 22-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 SMART SM00411 1 91 6.4E-38 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 2 92 1.5E-43 T 22-04-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 RM11_RS00070 99be81b3bff380f46d0e0281ed0d423a 92 Gene3D G3DSA:4.10.520.10 2 92 5.3E-32 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RM11_RS05430 6cea6ec866daa3fb4d7fdca71464c276 246 Pfam PF13763 Domain of unknown function (DUF4167) 10 86 2.9E-32 T 22-04-2016 IPR025430 Domain of unknown function DUF4167 RM11_RS06650 aa54e00ce8bc8e6c95d0e9cc05de26ed 161 Pfam PF01899 Na+/H+ ion antiporter subunit 13 159 1.2E-29 T 22-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RM11_RS00040 13d52f12fbb4e256af19a92726ada70a 257 PANTHER PTHR23291:SF42 79 256 5.6E-64 T 22-04-2016 RM11_RS00040 13d52f12fbb4e256af19a92726ada70a 257 PANTHER PTHR23291:SF42 21 60 5.6E-64 T 22-04-2016 RM11_RS00040 13d52f12fbb4e256af19a92726ada70a 257 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 24 252 1.2E-58 T 22-04-2016 RM11_RS00040 13d52f12fbb4e256af19a92726ada70a 257 PANTHER PTHR23291 79 256 5.6E-64 T 22-04-2016 IPR006214 Bax inhibitor 1-related RM11_RS00040 13d52f12fbb4e256af19a92726ada70a 257 PANTHER PTHR23291 21 60 5.6E-64 T 22-04-2016 IPR006214 Bax inhibitor 1-related RM11_RS00900 42f291fd15d73600abfc20f06c744316 324 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 12 324 3.8E-143 T 22-04-2016 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RM11_RS00900 42f291fd15d73600abfc20f06c744316 324 SUPERFAMILY SSF47240 8 324 1.38E-101 T 22-04-2016 IPR009078 Ferritin-like superfamily RM11_RS00900 42f291fd15d73600abfc20f06c744316 324 Gene3D G3DSA:1.10.620.20 13 279 2.3E-87 T 22-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 RM11_RS00900 42f291fd15d73600abfc20f06c744316 324 PANTHER PTHR23409 14 324 1.2E-96 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RM11_RS00900 42f291fd15d73600abfc20f06c744316 324 Pfam PF00268 Ribonucleotide reductase, small chain 14 285 6.2E-84 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RM11_RS00900 42f291fd15d73600abfc20f06c744316 324 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 102 118 - T 22-04-2016 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RM11_RS00900 42f291fd15d73600abfc20f06c744316 324 PIRSF PIRSF000355 2 321 5.3E-80 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RM11_RS01990 d9855c735b2215219d02ce3cbea5f988 179 PIRSF PIRSF010244 1 179 4.2E-45 T 22-04-2016 IPR014456 Uncharacterised conserved protein UCP010244, integral membrane protein RM11_RS04965 990e0aa7a8f1311fb65335737a69cc72 194 Pfam PF00583 Acetyltransferase (GNAT) family 66 140 2.8E-9 T 22-04-2016 IPR000182 GNAT domain GO:0008080 RM11_RS04965 990e0aa7a8f1311fb65335737a69cc72 194 Gene3D G3DSA:3.40.630.30 54 141 7.8E-14 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RM11_RS04965 990e0aa7a8f1311fb65335737a69cc72 194 SUPERFAMILY SSF55729 44 141 9.78E-17 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 142 154 5.1E-31 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 65 81 5.1E-31 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 111 130 5.1E-31 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 8 21 5.1E-31 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 87 103 5.1E-31 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 SUPERFAMILY SSF53098 6 158 1.5E-48 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 117 151 - T 22-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 7 158 1.0E-44 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 5 157 43.89 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 7 154 2.3E-43 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 Gene3D G3DSA:3.30.420.10 6 159 1.9E-57 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS05910 edbcabbd2820dd8c3dd0f7643729b0d0 169 PANTHER PTHR30194 1 169 4.3E-55 T 22-04-2016 RM11_RS02470 f3df97eab6303f7a62b50a350526a2dc 128 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 18 124 7.0E-25 T 22-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RM11_RS02470 f3df97eab6303f7a62b50a350526a2dc 128 SUPERFAMILY SSF64076 11 127 1.15E-35 T 22-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RM11_RS02470 f3df97eab6303f7a62b50a350526a2dc 128 PANTHER PTHR21192:SF3 6 124 1.4E-23 T 22-04-2016 RM11_RS02470 f3df97eab6303f7a62b50a350526a2dc 128 Gene3D G3DSA:3.40.1230.10 3 127 1.2E-36 T 22-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RM11_RS02470 f3df97eab6303f7a62b50a350526a2dc 128 PANTHER PTHR21192 6 124 1.4E-23 T 22-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RM11_RS03600 0c63e4e6fa2508293404b0aedda68b75 70 Hamap MF_00422 Protein translocase subunit SecE [secE]. 5 62 10.834 T 22-04-2016 IPR022943 Preprotein translocase subunit SecE RM11_RS03600 0c63e4e6fa2508293404b0aedda68b75 70 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 8 55 1.0E-15 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RM11_RS03600 0c63e4e6fa2508293404b0aedda68b75 70 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 10 38 - T 22-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 RM11_RS03600 0c63e4e6fa2508293404b0aedda68b75 70 Gene3D G3DSA:1.20.5.1030 5 57 6.8E-18 T 22-04-2016 RM11_RS03600 0c63e4e6fa2508293404b0aedda68b75 70 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 9 56 1.8E-14 T 22-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 RM11_RS04575 91ed0d76c49be5c1ed75fce68364944e 83 Pfam PF04226 Transglycosylase associated protein 36 82 1.3E-12 T 22-04-2016 IPR007341 Transglycosylase-associated protein GO:0016021 RM11_RS01655 818ada4200288ea2e0ae2235df4975f2 247 PANTHER PTHR30582:SF1 59 234 2.9E-51 T 22-04-2016 RM11_RS01655 818ada4200288ea2e0ae2235df4975f2 247 Pfam PF03734 L,D-transpeptidase catalytic domain 81 216 5.7E-14 T 22-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RM11_RS01655 818ada4200288ea2e0ae2235df4975f2 247 PANTHER PTHR30582 59 234 2.9E-51 T 22-04-2016 RM11_RS01655 818ada4200288ea2e0ae2235df4975f2 247 SUPERFAMILY SSF141523 74 127 3.66E-29 T 22-04-2016 RM11_RS01655 818ada4200288ea2e0ae2235df4975f2 247 SUPERFAMILY SSF141523 155 217 3.66E-29 T 22-04-2016 RM11_RS01655 818ada4200288ea2e0ae2235df4975f2 247 Gene3D G3DSA:2.40.440.10 75 217 1.1E-31 T 22-04-2016 RM11_RS01030 70bd51f6554509a16bb97947b7c0d26e 137 SUPERFAMILY SSF47413 5 79 1.45E-28 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RM11_RS01030 70bd51f6554509a16bb97947b7c0d26e 137 Pfam PF01381 Helix-turn-helix 19 73 2.3E-13 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RM11_RS01030 70bd51f6554509a16bb97947b7c0d26e 137 SMART SM00530 18 73 2.3E-14 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RM11_RS01030 70bd51f6554509a16bb97947b7c0d26e 137 PANTHER PTHR10245:SF38 8 124 2.2E-34 T 22-04-2016 RM11_RS01030 70bd51f6554509a16bb97947b7c0d26e 137 PANTHER PTHR10245 8 124 2.2E-34 T 22-04-2016 RM11_RS01030 70bd51f6554509a16bb97947b7c0d26e 137 Gene3D G3DSA:1.10.260.40 5 76 2.3E-18 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RM11_RS03630 b72225330391cad3e3887be7c7b87108 246 Pfam PF01694 Rhomboid family 75 233 6.8E-29 T 22-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RM11_RS03630 b72225330391cad3e3887be7c7b87108 246 SUPERFAMILY SSF144091 22 237 2.22E-32 T 22-04-2016 RM11_RS03630 b72225330391cad3e3887be7c7b87108 246 PANTHER PTHR22936 177 241 7.0E-20 T 22-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 RM11_RS03630 b72225330391cad3e3887be7c7b87108 246 PANTHER PTHR22936 21 160 7.0E-20 T 22-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 RM11_RS03630 b72225330391cad3e3887be7c7b87108 246 Gene3D G3DSA:1.20.1540.10 25 235 8.2E-30 T 22-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RM11_RS01345 6541702722b465a6daa5b6af2353843e 212 Pfam PF02361 Cobalt transport protein 9 198 1.4E-20 T 22-04-2016 IPR003339 ABC/ECF transporter, transmembrane component RM11_RS01345 6541702722b465a6daa5b6af2353843e 212 PANTHER PTHR33514 1 196 1.6E-36 T 22-04-2016 RM11_RS06235 03a335ff1d40a5b8e424b6c5b09c0a7d 100 Pfam PF04956 TrbC/VIRB2 family 6 97 2.1E-20 T 22-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RM11_RS04175 9271c5041fb9018acf44e390a54152e3 248 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS04175 9271c5041fb9018acf44e390a54152e3 248 PIRSF PIRSF039085 2 247 3.4E-101 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RM11_RS04175 9271c5041fb9018acf44e390a54152e3 248 Gene3D G3DSA:3.40.50.300 4 234 4.4E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04175 9271c5041fb9018acf44e390a54152e3 248 SUPERFAMILY SSF52540 5 234 3.63E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04175 9271c5041fb9018acf44e390a54152e3 248 PANTHER PTHR24220:SF317 7 248 1.0E-155 T 22-04-2016 IPR030206 Glutamate/aspartate transport ATP-binding protein GltL/AatP GO:0005524|GO:0006865|GO:0043190 RM11_RS04175 9271c5041fb9018acf44e390a54152e3 248 SMART SM00382 30 217 2.2E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS04175 9271c5041fb9018acf44e390a54152e3 248 Pfam PF00005 ABC transporter 21 169 3.7E-35 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS04175 9271c5041fb9018acf44e390a54152e3 248 PANTHER PTHR24220 7 248 1.0E-155 T 22-04-2016 RM11_RS06660 53f453aa8e6cbcd5484d04739219103a 113 PANTHER PTHR34583:SF1 1 111 1.7E-41 T 22-04-2016 RM11_RS06660 53f453aa8e6cbcd5484d04739219103a 113 PANTHER PTHR34583 1 111 1.7E-41 T 22-04-2016 RM11_RS06660 53f453aa8e6cbcd5484d04739219103a 113 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 108 6.6E-27 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RM11_RS06440 8a55f30c7e55e047a4cfc47d6141be17 110 Pfam PF01817 Chorismate mutase type II 13 88 1.3E-15 T 22-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RM11_RS06440 8a55f30c7e55e047a4cfc47d6141be17 110 Gene3D G3DSA:1.20.59.10 7 90 3.4E-17 T 22-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RM11_RS06440 8a55f30c7e55e047a4cfc47d6141be17 110 TIGRFAM TIGR01795 CM_mono_cladeE: chorismate mutase 7 96 1.0E-38 T 22-04-2016 IPR010951 Chorismate mutase, bacteria RM11_RS06440 8a55f30c7e55e047a4cfc47d6141be17 110 SUPERFAMILY SSF48600 4 90 5.34E-22 T 22-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RM11_RS06440 8a55f30c7e55e047a4cfc47d6141be17 110 SMART SM00830 13 93 2.7E-18 T 22-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RM11_RS01125 ae3c7f3d36a1cdcfc906a66a40568f98 262 PANTHER PTHR10953:SF153 9 250 1.7E-89 T 22-04-2016 RM11_RS01125 ae3c7f3d36a1cdcfc906a66a40568f98 262 Gene3D G3DSA:3.40.50.720 9 248 1.1E-62 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS01125 ae3c7f3d36a1cdcfc906a66a40568f98 262 SUPERFAMILY SSF69572 7 249 2.75E-76 T 22-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RM11_RS01125 ae3c7f3d36a1cdcfc906a66a40568f98 262 Pfam PF00899 ThiF family 17 250 1.8E-55 T 22-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RM11_RS01125 ae3c7f3d36a1cdcfc906a66a40568f98 262 PANTHER PTHR10953 9 250 1.7E-89 T 22-04-2016 RM11_RS05665 d58b7c268208fd301ac108788978d27e 65 Gene3D G3DSA:3.40.50.10090 21 52 6.6E-4 T 22-04-2016 RM11_RS06550 43e82e2b57fa3288f71ba9848cb7da69 310 PANTHER PTHR21363 1 290 4.2E-75 T 22-04-2016 RM11_RS06550 43e82e2b57fa3288f71ba9848cb7da69 310 Gene3D G3DSA:3.40.50.720 5 179 6.1E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06550 43e82e2b57fa3288f71ba9848cb7da69 310 PANTHER PTHR21363:SF0 1 290 4.2E-75 T 22-04-2016 RM11_RS06550 43e82e2b57fa3288f71ba9848cb7da69 310 Pfam PF02153 Prephenate dehydrogenase 21 278 1.9E-73 T 22-04-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 RM11_RS06550 43e82e2b57fa3288f71ba9848cb7da69 310 SUPERFAMILY SSF51735 8 174 5.33E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS06550 43e82e2b57fa3288f71ba9848cb7da69 310 SUPERFAMILY SSF48179 178 288 8.28E-34 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 SUPERFAMILY SSF81442 49 570 6.02E-167 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 Gene3D G3DSA:1.20.210.10 47 598 4.6E-178 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PANTHER PTHR10422 38 624 0.0 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 61 510 3.1E-134 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PANTHER PTHR10422:SF26 38 624 0.0 T 22-04-2016 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 286 340 - T 22-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 130 154 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 52 77 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 284 305 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 172 184 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 330 345 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 467 488 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 417 436 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 354 375 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 204 222 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 103 126 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 233 252 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 389 407 9.0E-94 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RM11_RS00570 a0ec9fda6e7fa9cbc794d10f282902f8 672 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 3 658 0.0 T 22-04-2016 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 RM11_RS04665 2d2ea3a9ecc7872c92de67e60966b784 303 Pfam PF01882 Protein of unknown function DUF58 53 136 5.9E-15 T 22-04-2016 IPR002881 Domain of unknown function DUF58 RM11_RS04665 2d2ea3a9ecc7872c92de67e60966b784 303 PANTHER PTHR33608 31 299 1.3E-54 T 22-04-2016 RM11_RS04665 2d2ea3a9ecc7872c92de67e60966b784 303 PANTHER PTHR33608:SF2 31 299 1.3E-54 T 22-04-2016 RM11_RS01340 71fd1f9e872fa437dc5752c6dcb2bead 226 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RM11_RS01340 71fd1f9e872fa437dc5752c6dcb2bead 226 SUPERFAMILY SSF52540 4 209 1.81E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01340 71fd1f9e872fa437dc5752c6dcb2bead 226 PANTHER PTHR24220:SF66 5 214 5.1E-64 T 22-04-2016 RM11_RS01340 71fd1f9e872fa437dc5752c6dcb2bead 226 PANTHER PTHR24220 5 214 5.1E-64 T 22-04-2016 RM11_RS01340 71fd1f9e872fa437dc5752c6dcb2bead 226 Gene3D G3DSA:3.40.50.300 3 211 2.9E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01340 71fd1f9e872fa437dc5752c6dcb2bead 226 Pfam PF00005 ABC transporter 21 162 8.7E-25 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS01340 71fd1f9e872fa437dc5752c6dcb2bead 226 SMART SM00382 27 207 1.3E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS06205 dfc18df0f241f77f722607163850df0f 95 SMART SM00528 54 94 1.9E-4 T 22-04-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RM11_RS06205 dfc18df0f241f77f722607163850df0f 95 Pfam PF00816 H-NS histone family 11 86 7.2E-13 T 22-04-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RM11_RS06205 dfc18df0f241f77f722607163850df0f 95 Gene3D G3DSA:4.10.430.10 59 94 1.1E-12 T 22-04-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RM11_RS06205 dfc18df0f241f77f722607163850df0f 95 SUPERFAMILY SSF81273 57 94 3.69E-11 T 22-04-2016 RM11_RS02135 f7282d0204abe2cd78922e1a242b22f1 724 SUPERFAMILY SSF56935 32 724 2.05E-92 T 22-04-2016 RM11_RS02135 f7282d0204abe2cd78922e1a242b22f1 724 PANTHER PTHR32552:SF18 1 724 4.1E-87 T 22-04-2016 RM11_RS02135 f7282d0204abe2cd78922e1a242b22f1 724 Gene3D G3DSA:2.40.170.20 161 724 6.9E-93 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RM11_RS02135 f7282d0204abe2cd78922e1a242b22f1 724 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 157 2.1E-14 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RM11_RS02135 f7282d0204abe2cd78922e1a242b22f1 724 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 41 724 1.2E-115 T 22-04-2016 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 RM11_RS02135 f7282d0204abe2cd78922e1a242b22f1 724 Pfam PF00593 TonB dependent receptor 470 720 1.2E-32 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RM11_RS02135 f7282d0204abe2cd78922e1a242b22f1 724 Gene3D G3DSA:2.170.130.10 32 160 1.8E-19 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RM11_RS02135 f7282d0204abe2cd78922e1a242b22f1 724 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 59 724 4.6E-120 T 22-04-2016 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 RM11_RS02135 f7282d0204abe2cd78922e1a242b22f1 724 PANTHER PTHR32552 1 724 4.1E-87 T 22-04-2016 RM11_RS02085 65f9280bb1ee22e8fb933fef549f818f 248 Pfam PF08543 Phosphomethylpyrimidine kinase 14 244 1.1E-64 T 22-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 RM11_RS02085 65f9280bb1ee22e8fb933fef549f818f 248 Gene3D G3DSA:3.40.1190.20 5 244 1.0E-70 T 22-04-2016 IPR029056 Ribokinase-like RM11_RS02085 65f9280bb1ee22e8fb933fef549f818f 248 SUPERFAMILY SSF53613 5 244 5.46E-57 T 22-04-2016 IPR029056 Ribokinase-like RM11_RS00475 0aaef8efca3cada60f7aab27d273bcbb 167 PANTHER PTHR35335 10 115 3.2E-19 T 22-04-2016 RM11_RS00475 0aaef8efca3cada60f7aab27d273bcbb 167 PANTHER PTHR35335:SF1 10 115 3.2E-19 T 22-04-2016 RM11_RS00475 0aaef8efca3cada60f7aab27d273bcbb 167 Pfam PF04186 FxsA cytoplasmic membrane protein 16 119 9.4E-26 T 22-04-2016 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 RM11_RS03030 420cd0a93bd39f74e6d3c1e0f46aae69 422 PANTHER PTHR30508 3 422 2.8E-74 T 22-04-2016 RM11_RS03030 420cd0a93bd39f74e6d3c1e0f46aae69 422 Pfam PF01458 Uncharacterized protein family (UPF0051) 175 393 3.6E-58 T 22-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 RM11_RS03030 420cd0a93bd39f74e6d3c1e0f46aae69 422 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 139 407 3.5E-72 T 22-04-2016 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 RM11_RS03030 420cd0a93bd39f74e6d3c1e0f46aae69 422 SUPERFAMILY SSF101960 19 420 2.22E-95 T 22-04-2016 RM11_RS03030 420cd0a93bd39f74e6d3c1e0f46aae69 422 PANTHER PTHR30508:SF0 3 422 2.8E-74 T 22-04-2016 RM11_RS01050 7ad5c246d430ef65bf5577141128587d 369 PANTHER PTHR30473:SF1 20 359 5.1E-150 T 22-04-2016 RM11_RS01050 7ad5c246d430ef65bf5577141128587d 369 PANTHER PTHR30473 20 359 5.1E-150 T 22-04-2016 RM11_RS01050 7ad5c246d430ef65bf5577141128587d 369 Gene3D G3DSA:3.40.50.300 145 349 2.2E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01050 7ad5c246d430ef65bf5577141128587d 369 Pfam PF02562 PhoH-like protein 147 350 2.0E-90 T 22-04-2016 IPR003714 PhoH-like protein GO:0005524 RM11_RS01050 7ad5c246d430ef65bf5577141128587d 369 SUPERFAMILY SSF52540 146 322 2.4E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS03530 375a7e99a2027332f8655ea36fb91f2e 140 SUPERFAMILY SSF54197 4 140 1.55E-40 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 RM11_RS03530 375a7e99a2027332f8655ea36fb91f2e 140 Pfam PF01230 HIT domain 17 112 1.8E-28 T 22-04-2016 IPR001310 Histidine triad (HIT) protein RM11_RS03530 375a7e99a2027332f8655ea36fb91f2e 140 Gene3D G3DSA:3.30.428.10 3 112 1.2E-36 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 RM11_RS03530 375a7e99a2027332f8655ea36fb91f2e 140 PRINTS PR00332 Histidine triad family signature 98 108 1.1E-17 T 22-04-2016 IPR001310 Histidine triad (HIT) protein RM11_RS03530 375a7e99a2027332f8655ea36fb91f2e 140 PRINTS PR00332 Histidine triad family signature 10 26 1.1E-17 T 22-04-2016 IPR001310 Histidine triad (HIT) protein RM11_RS03530 375a7e99a2027332f8655ea36fb91f2e 140 PRINTS PR00332 Histidine triad family signature 31 49 1.1E-17 T 22-04-2016 IPR001310 Histidine triad (HIT) protein RM11_RS00805 33aa2d0ce3dd27a5a0af5b341ddb314f 296 Pfam PF00483 Nucleotidyl transferase 11 268 8.8E-21 T 22-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RM11_RS00805 33aa2d0ce3dd27a5a0af5b341ddb314f 296 PANTHER PTHR22572:SF14 6 292 7.0E-88 T 22-04-2016 RM11_RS00805 33aa2d0ce3dd27a5a0af5b341ddb314f 296 Gene3D G3DSA:3.90.550.10 4 276 1.5E-61 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS00805 33aa2d0ce3dd27a5a0af5b341ddb314f 296 SUPERFAMILY SSF53448 3 270 5.41E-56 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RM11_RS00805 33aa2d0ce3dd27a5a0af5b341ddb314f 296 PANTHER PTHR22572 6 292 7.0E-88 T 22-04-2016 RM11_RS02950 5688f77d92e6b54cd1fa7e3dc4954d5e 422 PANTHER PTHR30489 16 422 9.4E-79 T 22-04-2016 RM11_RS02950 5688f77d92e6b54cd1fa7e3dc4954d5e 422 PANTHER PTHR30489:SF8 16 422 9.4E-79 T 22-04-2016 RM11_RS02950 5688f77d92e6b54cd1fa7e3dc4954d5e 422 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 13 422 2.9E-145 T 22-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 RM11_RS02950 5688f77d92e6b54cd1fa7e3dc4954d5e 422 Pfam PF02687 FtsX-like permease family 282 415 2.2E-18 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RM11_RS02950 5688f77d92e6b54cd1fa7e3dc4954d5e 422 Pfam PF12704 MacB-like periplasmic core domain 34 250 8.9E-17 T 22-04-2016 IPR025857 MacB-like periplasmic core domain RM11_RS04010 febc30524a7c1aa7d39f35c54e988158 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 33.502 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RM11_RS04010 febc30524a7c1aa7d39f35c54e988158 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 22-04-2016 IPR018102 Ribosomal S11, conserved site RM11_RS04010 febc30524a7c1aa7d39f35c54e988158 129 SUPERFAMILY SSF53137 14 129 1.44E-48 T 22-04-2016 RM11_RS04010 febc30524a7c1aa7d39f35c54e988158 129 Gene3D G3DSA:3.30.420.80 6 129 2.9E-55 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RM11_RS04010 febc30524a7c1aa7d39f35c54e988158 129 PANTHER PTHR11759 10 129 6.5E-68 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RM11_RS04010 febc30524a7c1aa7d39f35c54e988158 129 Pfam PF00411 Ribosomal protein S11 19 128 3.9E-49 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RM11_RS04010 febc30524a7c1aa7d39f35c54e988158 129 PIRSF PIRSF002131 1 129 1.3E-52 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RM11_RS04010 febc30524a7c1aa7d39f35c54e988158 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 1.8E-57 T 22-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RM11_RS02435 f30f06bcc315019341ce32a87af42915 103 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 2 73 19.176 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RM11_RS02435 f30f06bcc315019341ce32a87af42915 103 Pfam PF02416 mttA/Hcf106 family 6 49 7.1E-10 T 22-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RM11_RS02435 f30f06bcc315019341ce32a87af42915 103 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 47 5.0E-19 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RM11_RS03900 fc4cd969ee05c295c63d58e3ee18554d 475 SUPERFAMILY SSF103473 247 447 5.62E-39 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS03900 fc4cd969ee05c295c63d58e3ee18554d 475 SUPERFAMILY SSF103473 16 194 5.62E-39 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS03900 fc4cd969ee05c295c63d58e3ee18554d 475 Pfam PF07690 Major Facilitator Superfamily 24 391 1.2E-34 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RM11_RS03900 fc4cd969ee05c295c63d58e3ee18554d 475 Gene3D G3DSA:1.20.1250.20 267 449 4.5E-5 T 22-04-2016 RM11_RS03900 fc4cd969ee05c295c63d58e3ee18554d 475 Gene3D G3DSA:1.20.1250.20 18 194 6.0E-24 T 22-04-2016 RM11_RS03900 fc4cd969ee05c295c63d58e3ee18554d 475 PANTHER PTHR23501 16 447 3.3E-45 T 22-04-2016 RM11_RS01600 7f4b0b9cdbbabba021b938d242c40179 338 Pfam PF00348 Polyprenyl synthetase 45 286 5.6E-67 T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RM11_RS01600 7f4b0b9cdbbabba021b938d242c40179 338 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 217 229 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RM11_RS01600 7f4b0b9cdbbabba021b938d242c40179 338 PANTHER PTHR12001:SF47 2 338 1.3E-99 T 22-04-2016 RM11_RS01600 7f4b0b9cdbbabba021b938d242c40179 338 PANTHER PTHR12001 2 338 1.3E-99 T 22-04-2016 IPR017446 Polyprenyl synthetase-related RM11_RS01600 7f4b0b9cdbbabba021b938d242c40179 338 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 95 109 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RM11_RS01600 7f4b0b9cdbbabba021b938d242c40179 338 SUPERFAMILY SSF48576 17 336 2.88E-91 T 22-04-2016 IPR008949 Isoprenoid synthase domain RM11_RS01600 7f4b0b9cdbbabba021b938d242c40179 338 Gene3D G3DSA:1.10.600.10 17 336 1.5E-93 T 22-04-2016 IPR008949 Isoprenoid synthase domain RM11_RS00280 352f3ace0214c4913cc6c5a5c301c708 154 SUPERFAMILY SSF53795 7 142 5.8E-17 T 22-04-2016 RM11_RS00280 352f3ace0214c4913cc6c5a5c301c708 154 Pfam PF07475 HPr Serine kinase C-terminal domain 5 128 3.9E-10 T 22-04-2016 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 RM11_RS00280 352f3ace0214c4913cc6c5a5c301c708 154 Gene3D G3DSA:3.40.50.300 7 142 7.3E-25 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS01750 508b0c43d64ed90959ceb82caacf8395 223 Hamap MF_00052_B Ribonuclease HII [rnhB]. 33 214 35.478 T 22-04-2016 IPR022898 Ribonuclease HII GO:0004523 RM11_RS01750 508b0c43d64ed90959ceb82caacf8395 223 Pfam PF01351 Ribonuclease HII 35 212 4.6E-36 T 22-04-2016 IPR024567 Ribonuclease HII/HIII domain RM11_RS01750 508b0c43d64ed90959ceb82caacf8395 223 Gene3D G3DSA:3.30.420.10 34 171 4.0E-42 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS01750 508b0c43d64ed90959ceb82caacf8395 223 SUPERFAMILY SSF53098 23 217 2.28E-61 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RM11_RS01715 57edc05aab3993a25483dc951f1a3fe4 85 Pfam PF04380 Membrane fusogenic activity 5 79 7.4E-20 T 22-04-2016 IPR007475 Membrane fusogenic activity RM11_RS01350 6df70f2636e2cad7a669e500144e5c6d 184 PIRSF PIRSF016661 1 181 4.8E-46 T 22-04-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RM11_RS01350 6df70f2636e2cad7a669e500144e5c6d 184 PANTHER PTHR34295 1 179 1.3E-62 T 22-04-2016 RM11_RS01350 6df70f2636e2cad7a669e500144e5c6d 184 PANTHER PTHR34295:SF2 1 179 1.3E-62 T 22-04-2016 RM11_RS01350 6df70f2636e2cad7a669e500144e5c6d 184 Pfam PF02632 BioY family 32 173 6.2E-30 T 22-04-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RM11_RS01705 9c970d1d5c0a076bfdbcfbe5e67652a9 363 PANTHER PTHR12049 4 363 1.0E-91 T 22-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RM11_RS01705 9c970d1d5c0a076bfdbcfbe5e67652a9 363 PANTHER PTHR12049:SF7 4 363 1.0E-91 T 22-04-2016 RM11_RS01705 9c970d1d5c0a076bfdbcfbe5e67652a9 363 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 61 290 5.6E-61 T 22-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RM11_RS01705 9c970d1d5c0a076bfdbcfbe5e67652a9 363 SUPERFAMILY SSF53335 6 355 3.45E-107 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RM11_RS00075 4e234a99dfbace5c96fa59d0d6fd4690 222 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 84 216 1.6E-5 T 22-04-2016 IPR010664 Lipopolysaccharide assembly, LptC-related RM11_RS05545 2718f2fc264e4ddbaf2ffdd1e16db922 66 SUPERFAMILY SSF57716 18 61 1.71E-13 T 22-04-2016 RM11_RS05545 2718f2fc264e4ddbaf2ffdd1e16db922 66 Gene3D G3DSA:3.30.50.10 12 65 7.0E-21 T 22-04-2016 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 RM11_RS05545 2718f2fc264e4ddbaf2ffdd1e16db922 66 Pfam PF03884 Domain of unknown function (DUF329) 20 65 2.1E-12 T 22-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RM11_RS05545 2718f2fc264e4ddbaf2ffdd1e16db922 66 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 15 65 14.789 T 22-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RM11_RS05040 13877613f3635a8d179d6641eb15e23e 208 SMART SM00287 31 94 3.3E-6 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type RM11_RS05040 13877613f3635a8d179d6641eb15e23e 208 Pfam PF08239 Bacterial SH3 domain 41 91 4.4E-11 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type RM11_RS06310 58dc819b09e702baeb225fc3d17c8477 266 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 6 242 5.2E-76 T 22-04-2016 IPR014148 P-type conjugative transfer protein VirB9 RM11_RS06310 58dc819b09e702baeb225fc3d17c8477 266 Pfam PF03524 Conjugal transfer protein 33 240 4.6E-56 T 22-04-2016 IPR010258 Conjugal transfer, TrbG/VirB9/CagX RM11_RS05515 7d253303b98582f49cdd6c65f3d94a47 441 Pfam PF04466 Phage terminase large subunit 23 246 4.9E-25 T 22-04-2016 IPR006437 Bacteriophage terminase, large subunit GO:0006323 RM11_RS01065 c0faaf7f6a963cc8123931d48276ba7b 227 Pfam PF00814 Glycoprotease family 30 162 5.5E-26 T 22-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RM11_RS01065 c0faaf7f6a963cc8123931d48276ba7b 227 PANTHER PTHR11735:SF11 1 156 8.2E-35 T 22-04-2016 RM11_RS01065 c0faaf7f6a963cc8123931d48276ba7b 227 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 211 5.1E-51 T 22-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 RM11_RS01065 c0faaf7f6a963cc8123931d48276ba7b 227 SUPERFAMILY SSF53067 1 102 8.2E-29 T 22-04-2016 RM11_RS01065 c0faaf7f6a963cc8123931d48276ba7b 227 Gene3D G3DSA:3.30.420.40 1 129 3.2E-37 T 22-04-2016 RM11_RS01065 c0faaf7f6a963cc8123931d48276ba7b 227 PANTHER PTHR11735 1 156 8.2E-35 T 22-04-2016 RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 Pfam PF16189 Creatinase/Prolidase N-terminal domain 159 318 5.7E-31 T 22-04-2016 RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 SUPERFAMILY SSF55920 315 574 1.96E-55 T 22-04-2016 IPR000994 Peptidase M24, structural domain RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 Pfam PF16188 C-terminal region of peptidase_M24 548 608 8.8E-21 T 22-04-2016 IPR032416 Peptidase M24, C-terminal domain RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 PANTHER PTHR10804 294 606 8.4E-207 T 22-04-2016 RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 PANTHER PTHR10804 1 190 8.4E-207 T 22-04-2016 RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 Pfam PF00557 Metallopeptidase family M24 323 537 1.3E-45 T 22-04-2016 IPR000994 Peptidase M24, structural domain RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 Gene3D G3DSA:3.40.350.10 181 251 2.4E-5 T 22-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 Gene3D G3DSA:3.40.350.10 15 137 1.6E-20 T 22-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 Gene3D G3DSA:3.90.230.10 312 575 4.9E-60 T 22-04-2016 IPR000994 Peptidase M24, structural domain RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 PANTHER PTHR10804:SF105 294 606 8.4E-207 T 22-04-2016 RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 PANTHER PTHR10804:SF105 1 190 8.4E-207 T 22-04-2016 RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 SUPERFAMILY SSF53092 15 137 2.27E-10 T 22-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal RM11_RS04370 31c8794d92e39566d6a0f8d9ac65c92a 608 Pfam PF01321 Creatinase/Prolidase N-terminal domain 17 147 1.1E-17 T 22-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 RM11_RS03060 b9746885d93208c5af9452a0130c191e 266 Pfam PF01066 CDP-alcohol phosphatidyltransferase 45 109 2.1E-6 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RM11_RS03060 b9746885d93208c5af9452a0130c191e 266 PIRSF PIRSF000851 28 266 2.8E-88 T 22-04-2016 IPR026027 Phosphatidylcholine synthase Pcs KEGG: 00564+2.7.8.24|MetaCyc: PWY-6826 RM11_RS06275 c75f8685c0eef48fb6bd3d54d0dfb946 250 SUPERFAMILY SSF101082 61 230 7.72E-36 T 22-04-2016 IPR023220 Type IV secretion system, VirB5-domain RM11_RS06275 c75f8685c0eef48fb6bd3d54d0dfb946 250 Pfam PF07996 Type IV secretion system proteins 65 229 1.3E-19 T 22-04-2016 IPR014158 Type IV secretion system, VirB5 RM11_RS06275 c75f8685c0eef48fb6bd3d54d0dfb946 250 Gene3D G3DSA:1.20.58.430 62 230 4.2E-42 T 22-04-2016 IPR023220 Type IV secretion system, VirB5-domain RM11_RS01920 773ad38a15843f1c68b7ab7049b970ff 166 Pfam PF05258 Protein of unknown function (DUF721) 13 110 8.1E-15 T 22-04-2016 IPR007922 Protein of unknown function DUF721/UPF0232 RM11_RS01920 773ad38a15843f1c68b7ab7049b970ff 166 PIRSF PIRSF032064 1 165 7.1E-47 T 22-04-2016 IPR010593 Protein of unknown function DUF1159 RM11_RS01955 9ad42f13d779d5e3db1ca9780975cbb4 145 Pfam PF05443 ROS/MUCR transcriptional regulator protein 15 136 4.7E-48 T 22-04-2016 IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 RM11_RS05740 609a469f046df712e8af01e5c9b8559a 220 PANTHER PTHR38107:SF2 1 151 6.5E-46 T 22-04-2016 RM11_RS05740 609a469f046df712e8af01e5c9b8559a 220 SUPERFAMILY SSF53955 2 158 2.35E-53 T 22-04-2016 IPR023346 Lysozyme-like domain RM11_RS05740 609a469f046df712e8af01e5c9b8559a 220 Gene3D G3DSA:1.10.530.40 3 154 3.4E-61 T 22-04-2016 IPR023347 Lysozyme domain GO:0003796 RM11_RS05740 609a469f046df712e8af01e5c9b8559a 220 Pfam PF00959 Phage lysozyme 30 139 2.6E-21 T 22-04-2016 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 RM11_RS05740 609a469f046df712e8af01e5c9b8559a 220 PANTHER PTHR38107 1 151 6.5E-46 T 22-04-2016 RM11_RS02905 9e8d3c464ee1ff501b8d0b1ea8fc7c04 163 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 20 141 2.3E-47 T 22-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RM11_RS02905 9e8d3c464ee1ff501b8d0b1ea8fc7c04 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 103 114 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RM11_RS02905 9e8d3c464ee1ff501b8d0b1ea8fc7c04 163 Gene3D G3DSA:1.10.1060.10 14 140 1.1E-23 T 22-04-2016 RM11_RS02905 9e8d3c464ee1ff501b8d0b1ea8fc7c04 163 Pfam PF12838 4Fe-4S dicluster domain 62 117 1.4E-11 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RM11_RS02905 9e8d3c464ee1ff501b8d0b1ea8fc7c04 163 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 10 147 26.826 T 22-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RM11_RS02905 9e8d3c464ee1ff501b8d0b1ea8fc7c04 163 PANTHER PTHR10849 6 163 8.7E-102 T 22-04-2016 RM11_RS02905 9e8d3c464ee1ff501b8d0b1ea8fc7c04 163 PANTHER PTHR10849:SF20 6 163 8.7E-102 T 22-04-2016 RM11_RS02905 9e8d3c464ee1ff501b8d0b1ea8fc7c04 163 SUPERFAMILY SSF54862 36 147 2.68E-27 T 22-04-2016 RM11_RS02905 9e8d3c464ee1ff501b8d0b1ea8fc7c04 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 63 74 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RM11_RS03135 45e2ead1f0e4b747cf883a5557408f01 234 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 233 53.841 T 22-04-2016 IPR005224 Sugar fermentation stimulation protein RM11_RS03135 45e2ead1f0e4b747cf883a5557408f01 234 PANTHER PTHR30545:SF2 1 232 5.7E-69 T 22-04-2016 RM11_RS03135 45e2ead1f0e4b747cf883a5557408f01 234 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 3 223 7.9E-61 T 22-04-2016 IPR005224 Sugar fermentation stimulation protein RM11_RS03135 45e2ead1f0e4b747cf883a5557408f01 234 Pfam PF03749 Sugar fermentation stimulation protein 13 223 1.2E-71 T 22-04-2016 IPR005224 Sugar fermentation stimulation protein RM11_RS03135 45e2ead1f0e4b747cf883a5557408f01 234 PANTHER PTHR30545 1 232 5.7E-69 T 22-04-2016 RM11_RS06255 26a6cd16d2b469ca1722b6a47ffe59e7 105 Pfam PF04956 TrbC/VIRB2 family 1 102 4.9E-24 T 22-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RM11_RS06185 9feda96d721994a711d778f1a4dd66fb 269 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 6 258 3.4E-23 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RM11_RS06185 9feda96d721994a711d778f1a4dd66fb 269 Gene3D G3DSA:3.60.10.10 3 266 3.6E-66 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RM11_RS06185 9feda96d721994a711d778f1a4dd66fb 269 PANTHER PTHR22748 4 266 9.5E-82 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RM11_RS06185 9feda96d721994a711d778f1a4dd66fb 269 SUPERFAMILY SSF56219 3 266 3.14E-69 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RM11_RS06185 9feda96d721994a711d778f1a4dd66fb 269 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 4 265 6.1E-53 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RM11_RS06185 9feda96d721994a711d778f1a4dd66fb 269 PANTHER PTHR22748:SF7 4 266 9.5E-82 T 22-04-2016 RM11_RS06185 9feda96d721994a711d778f1a4dd66fb 269 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 29 38 - T 22-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RM11_RS01485 895036d92d98679dbecb0c2c2ebfcae4 626 Pfam PF13502 AsmA-like C-terminal region 393 561 7.4E-10 T 22-04-2016 IPR032712 AsmA-like, C-terminal RM11_RS01485 895036d92d98679dbecb0c2c2ebfcae4 626 Pfam PF05170 AsmA family 7 183 4.3E-9 T 22-04-2016 IPR007844 AsmA RM11_RS00080 65859237bdb510e8b9de1eb92189e179 192 Pfam PF03968 OstA-like protein 40 164 9.6E-19 T 22-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal RM11_RS00080 65859237bdb510e8b9de1eb92189e179 192 Gene3D G3DSA:2.60.450.10 32 184 4.9E-29 T 22-04-2016 RM11_RS05895 054d34d0b59d60505b838ecd5773e772 146 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 20 134 1.4E-29 T 22-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RM11_RS05895 054d34d0b59d60505b838ecd5773e772 146 PANTHER PTHR31793:SF9 16 144 6.1E-38 T 22-04-2016 RM11_RS05895 054d34d0b59d60505b838ecd5773e772 146 PIRSF PIRSF003230 7 145 4.6E-43 T 22-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RM11_RS05895 054d34d0b59d60505b838ecd5773e772 146 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 21 38 - T 22-04-2016 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 RM11_RS05895 054d34d0b59d60505b838ecd5773e772 146 Gene3D G3DSA:3.10.129.10 13 143 3.9E-41 T 22-04-2016 IPR029069 HotDog domain RM11_RS05895 054d34d0b59d60505b838ecd5773e772 146 Pfam PF03061 Thioesterase superfamily 31 117 9.2E-16 T 22-04-2016 IPR006683 Thioesterase domain RM11_RS05895 054d34d0b59d60505b838ecd5773e772 146 PANTHER PTHR31793 16 144 6.1E-38 T 22-04-2016 RM11_RS05895 054d34d0b59d60505b838ecd5773e772 146 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 16 141 7.8E-45 T 22-04-2016 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- RM11_RS05895 054d34d0b59d60505b838ecd5773e772 146 SUPERFAMILY SSF54637 15 143 5.78E-34 T 22-04-2016 IPR029069 HotDog domain RM11_RS06635 57f17ebc9f68861b038b4debb88a9c76 130 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 46 116 2.8E-16 T 22-04-2016 IPR018660 C-type lysozyme, inhibitor RM11_RS06635 57f17ebc9f68861b038b4debb88a9c76 130 SUPERFAMILY SSF141488 41 125 1.83E-21 T 22-04-2016 IPR018660 C-type lysozyme, inhibitor RM11_RS03835 8cdd83ff6079c74a5b26a45e6288c912 262 PANTHER PTHR31272:SF4 3 238 2.3E-72 T 22-04-2016 RM11_RS03835 8cdd83ff6079c74a5b26a45e6288c912 262 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 10 225 1.2E-57 T 22-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RM11_RS03835 8cdd83ff6079c74a5b26a45e6288c912 262 PANTHER PTHR31272 3 238 2.3E-72 T 22-04-2016 RM11_RS06390 d201ddfc2610978aeb41d8c1ae93b4b6 323 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 242 293 9.5E-5 T 22-04-2016 IPR013615 CbbQ/NirQ/NorQ, C-terminal RM11_RS06390 d201ddfc2610978aeb41d8c1ae93b4b6 323 TIGRFAM TIGR01650 PD_CobS: cobaltochelatase, CobS subunit 1 321 5.0E-190 T 22-04-2016 IPR006537 Cobaltochelatase subunit CobS KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RM11_RS06390 d201ddfc2610978aeb41d8c1ae93b4b6 323 Gene3D G3DSA:3.40.50.300 57 229 4.1E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06390 d201ddfc2610978aeb41d8c1ae93b4b6 323 SUPERFAMILY SSF52540 47 284 1.53E-27 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06390 d201ddfc2610978aeb41d8c1ae93b4b6 323 Pfam PF12556 Cobaltochelatase CobS subunit N terminal 7 40 4.5E-13 T 22-04-2016 IPR025865 Cobaltochelatase subunit CobS N-terminal domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RM11_RS06390 d201ddfc2610978aeb41d8c1ae93b4b6 323 Pfam PF07728 AAA domain (dynein-related subfamily) 67 189 1.5E-8 T 22-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RM11_RS04860 555825840c6608c3a4ad45db7fccd9d3 230 PANTHER PTHR11260 1 220 4.3E-63 T 22-04-2016 RM11_RS04860 555825840c6608c3a4ad45db7fccd9d3 230 SUPERFAMILY SSF52833 1 105 7.92E-16 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS04860 555825840c6608c3a4ad45db7fccd9d3 230 Gene3D G3DSA:1.20.1050.10 97 226 7.4E-32 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RM11_RS04860 555825840c6608c3a4ad45db7fccd9d3 230 SUPERFAMILY SSF47616 70 217 4.32E-25 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RM11_RS04860 555825840c6608c3a4ad45db7fccd9d3 230 PANTHER PTHR11260:SF286 1 220 4.3E-63 T 22-04-2016 RM11_RS04860 555825840c6608c3a4ad45db7fccd9d3 230 Gene3D G3DSA:3.40.30.10 1 96 1.4E-20 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS04860 555825840c6608c3a4ad45db7fccd9d3 230 Pfam PF14497 Glutathione S-transferase, C-terminal domain 148 209 1.1E-7 T 22-04-2016 IPR004046 Glutathione S-transferase, C-terminal RM11_RS04860 555825840c6608c3a4ad45db7fccd9d3 230 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 76 3.4E-8 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RM11_RS05330 0d11b62877e14a76372eee11e985e7af 160 SUPERFAMILY SSF52833 3 152 3.15E-38 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS05330 0d11b62877e14a76372eee11e985e7af 160 Gene3D G3DSA:3.40.30.10 4 150 1.4E-55 T 22-04-2016 IPR012336 Thioredoxin-like fold RM11_RS05330 0d11b62877e14a76372eee11e985e7af 160 PANTHER PTHR10430:SF19 4 153 5.2E-65 T 22-04-2016 RM11_RS05330 0d11b62877e14a76372eee11e985e7af 160 PANTHER PTHR10430 4 153 5.2E-65 T 22-04-2016 RM11_RS05330 0d11b62877e14a76372eee11e985e7af 160 Pfam PF08534 Redoxin 29 151 4.5E-29 T 22-04-2016 IPR013740 Redoxin GO:0016491 RM11_RS02245 7f0a88f1e90fb861df9aeca21f6a4d45 223 Pfam PF04239 Protein of unknown function (DUF421) 91 191 1.5E-20 T 22-04-2016 IPR007353 Protein of unknown function DUF421 RM11_RS02245 7f0a88f1e90fb861df9aeca21f6a4d45 223 Gene3D G3DSA:3.30.240.20 87 153 1.0E-14 T 22-04-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain RM11_RS02245 7f0a88f1e90fb861df9aeca21f6a4d45 223 Gene3D G3DSA:3.30.240.20 156 203 3.8E-13 T 22-04-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain RM11_RS02245 7f0a88f1e90fb861df9aeca21f6a4d45 223 PANTHER PTHR34582:SF6 4 205 2.6E-35 T 22-04-2016 RM11_RS02245 7f0a88f1e90fb861df9aeca21f6a4d45 223 PANTHER PTHR34582 4 205 2.6E-35 T 22-04-2016 RM11_RS06080 9fe6f5f9ff077141c6c9cd82bb0dc1f0 553 SUPERFAMILY SSF103473 36 224 8.5E-11 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS06080 9fe6f5f9ff077141c6c9cd82bb0dc1f0 553 SUPERFAMILY SSF103473 274 446 8.5E-11 T 22-04-2016 IPR020846 Major facilitator superfamily domain RM11_RS04815 379f64bc50bbb2583576a956860e7898 266 PANTHER PTHR11645 1 266 3.6E-32 T 22-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RM11_RS04815 379f64bc50bbb2583576a956860e7898 266 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 94 2.3E-12 T 22-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RM11_RS04815 379f64bc50bbb2583576a956860e7898 266 Gene3D G3DSA:3.40.50.720 2 129 8.5E-21 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04815 379f64bc50bbb2583576a956860e7898 266 SUPERFAMILY SSF51735 1 143 1.35E-16 T 22-04-2016 IPR016040 NAD(P)-binding domain RM11_RS04815 379f64bc50bbb2583576a956860e7898 266 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 154 256 4.5E-6 T 22-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RM11_RS04815 379f64bc50bbb2583576a956860e7898 266 PIRSF PIRSF000193 1 262 8.1E-36 T 22-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RM11_RS04815 379f64bc50bbb2583576a956860e7898 266 PANTHER PTHR11645:SF13 1 266 3.6E-32 T 22-04-2016 RM11_RS03520 1d712e60a8079b9c6c92a96667ca01b5 274 Pfam PF08904 Domain of unknown function (DUF1849) 22 264 3.0E-73 T 22-04-2016 IPR015000 Protein of unknown function DUF1849 RM11_RS02910 f0080ace44cfeea991fa36cd0e8ac30c 206 PANTHER PTHR33269 1 201 1.6E-64 T 22-04-2016 RM11_RS02910 f0080ace44cfeea991fa36cd0e8ac30c 206 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 20 170 1.3E-39 T 22-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 RM11_RS02910 f0080ace44cfeea991fa36cd0e8ac30c 206 PANTHER PTHR33269:SF4 1 201 1.6E-64 T 22-04-2016 RM11_RS02730 76069c4b2cc695854060cffb6159391a 588 Gene3D G3DSA:3.40.50.300 447 560 4.7E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS02730 76069c4b2cc695854060cffb6159391a 588 SUPERFAMILY SSF52540 447 559 8.35E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04760 43d97c5a692cc1954030af0ee7be1106 357 SUPERFAMILY SSF161098 221 343 4.58E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04760 43d97c5a692cc1954030af0ee7be1106 357 SUPERFAMILY SSF161098 114 182 4.58E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04760 43d97c5a692cc1954030af0ee7be1106 357 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 136 357 2.9E-40 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04760 43d97c5a692cc1954030af0ee7be1106 357 PANTHER PTHR30465 215 357 4.3E-100 T 22-04-2016 RM11_RS04760 43d97c5a692cc1954030af0ee7be1106 357 PANTHER PTHR30465 7 191 4.3E-100 T 22-04-2016 RM11_RS04760 43d97c5a692cc1954030af0ee7be1106 357 PANTHER PTHR30465:SF0 215 357 4.3E-100 T 22-04-2016 RM11_RS04760 43d97c5a692cc1954030af0ee7be1106 357 PANTHER PTHR30465:SF0 7 191 4.3E-100 T 22-04-2016 RM11_RS04760 43d97c5a692cc1954030af0ee7be1106 357 Gene3D G3DSA:1.10.3720.10 224 354 8.1E-23 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS04760 43d97c5a692cc1954030af0ee7be1106 357 Gene3D G3DSA:1.10.3720.10 112 185 8.1E-23 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RM11_RS06655 6414ca965d158582883b9ed4197ae381 540 PANTHER PTHR22773:SF49 1 530 4.8E-106 T 22-04-2016 RM11_RS06655 6414ca965d158582883b9ed4197ae381 540 Pfam PF00361 Proton-conducting membrane transporter 132 431 4.8E-29 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RM11_RS06655 6414ca965d158582883b9ed4197ae381 540 PANTHER PTHR22773 1 530 4.8E-106 T 22-04-2016 RM11_RS04620 14d1094533dca5fcde8aa6dd6ac610fd 464 PANTHER PTHR32024 1 462 3.9E-137 T 22-04-2016 RM11_RS04620 14d1094533dca5fcde8aa6dd6ac610fd 464 PANTHER PTHR32024:SF3 1 462 3.9E-137 T 22-04-2016 RM11_RS04620 14d1094533dca5fcde8aa6dd6ac610fd 464 Pfam PF02386 Cation transport protein 253 456 2.8E-20 T 22-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RM11_RS04620 14d1094533dca5fcde8aa6dd6ac610fd 464 Pfam PF02386 Cation transport protein 22 240 2.3E-36 T 22-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RM11_RS04620 14d1094533dca5fcde8aa6dd6ac610fd 464 PIRSF PIRSF006247 1 462 8.6E-159 T 22-04-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 RM11_RS02365 4bfedda56ca6a157123d965853124b40 364 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 5 360 7.5E-76 T 22-04-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 RM11_RS02365 4bfedda56ca6a157123d965853124b40 364 PANTHER PTHR33529 1 363 3.0E-43 T 22-04-2016 RM11_RS02365 4bfedda56ca6a157123d965853124b40 364 PANTHER PTHR33529:SF1 1 363 3.0E-43 T 22-04-2016 RM11_RS02365 4bfedda56ca6a157123d965853124b40 364 Pfam PF03739 Predicted permease YjgP/YjgQ family 8 359 1.1E-52 T 22-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RM11_RS05815 d77bc2a667ab8e143829ebd7fc68c42e 108 Pfam PF05957 Bacterial protein of unknown function (DUF883) 17 108 5.8E-14 T 22-04-2016 IPR010279 Protein of unknown function DUF883, ElaB RM11_RS00135 dde2856d0faa56ad23a8edf4c77ef3ec 1039 SUPERFAMILY SSF52540 361 723 2.52E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS00135 dde2856d0faa56ad23a8edf4c77ef3ec 1039 Pfam PF12705 PD-(D/E)XK nuclease superfamily 762 964 3.6E-15 T 22-04-2016 RM11_RS00135 dde2856d0faa56ad23a8edf4c77ef3ec 1039 TIGRFAM TIGR02786 addB_alphas: double-strand break repair protein AddB 6 1030 0.0 T 22-04-2016 IPR014153 Double-strand break repair protein AddB RM11_RS06240 3bb8023353689bdbe3aa2a908f88c9ca 105 Pfam PF04956 TrbC/VIRB2 family 1 102 1.1E-22 T 22-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RM11_RS05580 82ccc27fce6f3952fdd45894210652d0 196 SUPERFAMILY SSF158442 17 132 2.88E-9 T 22-04-2016 RM11_RS05580 82ccc27fce6f3952fdd45894210652d0 196 Pfam PF02600 Disulfide bond formation protein DsbB 15 97 8.1E-6 T 22-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 RM11_RS06190 d096362695e335b50d10ca38f3ed6b98 202 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 48 197 1.1E-31 T 22-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RM11_RS06190 d096362695e335b50d10ca38f3ed6b98 202 Gene3D G3DSA:2.50.20.10 39 197 3.7E-23 T 22-04-2016 RM11_RS06190 d096362695e335b50d10ca38f3ed6b98 202 PANTHER PTHR35869 7 197 4.3E-15 T 22-04-2016 RM11_RS06190 d096362695e335b50d10ca38f3ed6b98 202 SUPERFAMILY SSF89392 38 197 3.3E-24 T 22-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX RM11_RS06415 e147e72989e24f027f983b44eb1d8e3c 569 Pfam PF07940 Heparinase II/III-like protein 311 560 7.4E-52 T 22-04-2016 IPR012480 Heparinase II/III-like MetaCyc: PWY-7651 RM11_RS00095 77f02d465cf5a0f4840796843e911b85 167 Pfam PF06776 Invasion associated locus B (IalB) protein 114 161 5.4E-5 T 22-04-2016 IPR010642 Invasion protein B RM11_RS00365 ddbbaeb956418ea81340760dd28f7ce8 83 Pfam PF06620 Protein of unknown function (DUF1150) 11 83 8.5E-23 T 22-04-2016 IPR009531 Protein of unknown function DUF1150 RM11_RS02220 826024bb2c1462a59e545483d76b1377 206 SUPERFAMILY SSF109604 13 200 1.41E-53 T 22-04-2016 RM11_RS02220 826024bb2c1462a59e545483d76b1377 206 Gene3D G3DSA:1.10.3210.10 11 200 4.0E-67 T 22-04-2016 IPR006674 HD domain RM11_RS02735 ed2b6dc6f8442c2fdaa1e5a99cd48386 363 Pfam PF02628 Cytochrome oxidase assembly protein 29 348 1.1E-103 T 22-04-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 RM11_RS02735 ed2b6dc6f8442c2fdaa1e5a99cd48386 363 Hamap MF_01665 Heme A synthase [ctaA]. 24 358 25.015 T 22-04-2016 IPR023754 Heme A synthase, type 2 GO:0006784|GO:0016020|GO:0016627|GO:0055114 UniPathway: UPA00269 RM11_RS02735 ed2b6dc6f8442c2fdaa1e5a99cd48386 363 PANTHER PTHR23289 22 345 1.2E-107 T 22-04-2016 RM11_RS06295 72180135ce69958cbcf53d044c552c8f 294 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 40 259 3.4E-49 T 22-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RM11_RS05265 f3bb5e0b906fd44b6f428d600ac0c377 533 SUPERFAMILY SSF140931 25 218 1.31E-30 T 22-04-2016 IPR003812 Fido domain RM11_RS05265 f3bb5e0b906fd44b6f428d600ac0c377 533 PANTHER PTHR39560:SF1 5 83 5.2E-19 T 22-04-2016 RM11_RS05265 f3bb5e0b906fd44b6f428d600ac0c377 533 PANTHER PTHR39560:SF1 99 234 5.2E-19 T 22-04-2016 RM11_RS05265 f3bb5e0b906fd44b6f428d600ac0c377 533 PANTHER PTHR39560 5 83 5.2E-19 T 22-04-2016 RM11_RS05265 f3bb5e0b906fd44b6f428d600ac0c377 533 PANTHER PTHR39560 99 234 5.2E-19 T 22-04-2016 RM11_RS05265 f3bb5e0b906fd44b6f428d600ac0c377 533 Pfam PF02661 Fic/DOC family 50 162 1.0E-13 T 22-04-2016 IPR003812 Fido domain RM11_RS05265 f3bb5e0b906fd44b6f428d600ac0c377 533 Gene3D G3DSA:1.10.3290.10 6 216 6.0E-45 T 22-04-2016 IPR003812 Fido domain RM11_RS02815 ce0c3a664758da769cee6404ca3ac7ad 142 Gene3D G3DSA:3.90.1010.10 5 142 5.4E-18 T 22-04-2016 RM11_RS02815 ce0c3a664758da769cee6404ca3ac7ad 142 SUPERFAMILY SSF82649 1 141 3.4E-40 T 22-04-2016 RM11_RS02815 ce0c3a664758da769cee6404ca3ac7ad 142 Pfam PF01592 NifU-like N terminal domain 6 97 1.0E-8 T 22-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 RM11_RS01560 908aab9e9a49ddd7fc2532b01543bd71 141 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 63 113 1.3E-13 T 22-04-2016 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter RM11_RS06265 fa04c4bef43ae6be49a67ee1d836138b 102 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 9 89 5.2E-25 T 22-04-2016 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB RM11_RS02935 06377f2d7e7924a40d20a8045a0cbac9 269 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 19 256 7.2E-47 T 22-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RM11_RS02935 06377f2d7e7924a40d20a8045a0cbac9 269 PANTHER PTHR12835 15 256 1.0E-41 T 22-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RM11_RS02935 06377f2d7e7924a40d20a8045a0cbac9 269 Pfam PF03099 Biotin/lipoate A/B protein ligase family 37 151 2.7E-13 T 22-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RM11_RS02935 06377f2d7e7924a40d20a8045a0cbac9 269 Gene3D G3DSA:3.30.930.10 13 208 5.8E-46 T 22-04-2016 RM11_RS02935 06377f2d7e7924a40d20a8045a0cbac9 269 Gene3D G3DSA:2.30.30.100 214 256 2.9E-4 T 22-04-2016 RM11_RS02935 06377f2d7e7924a40d20a8045a0cbac9 269 SUPERFAMILY SSF55681 6 208 1.99E-43 T 22-04-2016 RM11_RS01255 4d31fad5bb6bf1e4ad5759dcb8ba7a6a 81 Pfam PF13773 Domain of unknown function (DUF4170) 8 74 1.2E-33 T 22-04-2016 IPR025226 Protein of unknown function DUF4170 RM11_RS03310 70c4cb0396d5abfcee17e3f655d73f27 214 Gene3D G3DSA:1.20.1440.20 36 213 1.6E-56 T 22-04-2016 IPR023353 LemA-like domain RM11_RS03310 70c4cb0396d5abfcee17e3f655d73f27 214 PANTHER PTHR34478 16 214 8.4E-71 T 22-04-2016 RM11_RS03310 70c4cb0396d5abfcee17e3f655d73f27 214 SUPERFAMILY SSF140478 45 201 4.05E-49 T 22-04-2016 IPR023353 LemA-like domain RM11_RS03310 70c4cb0396d5abfcee17e3f655d73f27 214 Pfam PF04011 LemA family 24 213 9.5E-61 T 22-04-2016 IPR007156 LemA RM11_RS03310 70c4cb0396d5abfcee17e3f655d73f27 214 PANTHER PTHR34478:SF2 16 214 8.4E-71 T 22-04-2016 RM11_RS06120 7857aa1faeb4113e8a501d1fc95e5e37 200 Pfam PF04390 Lipopolysaccharide-assembly 15 186 3.7E-7 T 22-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 RM11_RS04750 cd630aa0550aa63c1972ad0a539f49b9 286 Pfam PF00005 ABC transporter 28 183 5.3E-19 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RM11_RS04750 cd630aa0550aa63c1972ad0a539f49b9 286 Gene3D G3DSA:3.40.50.300 4 255 2.2E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS04750 cd630aa0550aa63c1972ad0a539f49b9 286 PANTHER PTHR24220 7 267 8.6E-99 T 22-04-2016 RM11_RS04750 cd630aa0550aa63c1972ad0a539f49b9 286 SMART SM00382 33 240 2.1E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain RM11_RS04750 cd630aa0550aa63c1972ad0a539f49b9 286 PANTHER PTHR24220:SF535 7 267 8.6E-99 T 22-04-2016 RM11_RS04750 cd630aa0550aa63c1972ad0a539f49b9 286 SUPERFAMILY SSF52540 5 243 1.01E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RM11_RS06245 6662506037079b3fd76a7cb600feab40 104 Pfam PF04956 TrbC/VIRB2 family 1 101 1.7E-22 T 22-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RM11_RS06430 906024d8501d280295c21a3b6f83e67d 71 Pfam PF07896 Protein of unknown function (DUF1674) 24 71 4.2E-13 T 22-04-2016 IPR012875 Protein of unknown function DUF1674 RM11_RS05680 f03a514680a7c52fbcb885a58da56cc1 332 Pfam PF07120 Protein of unknown function (DUF1376) 18 102 1.2E-13 T 22-04-2016 IPR010781 Protein of unknown function DUF1376 RM11_RS03525 daea373b6aaa6ab33446a2a419d091d2 153 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 6 148 1.2E-28 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RM11_RS03525 daea373b6aaa6ab33446a2a419d091d2 153 PANTHER PTHR11803:SF2 1 152 7.0E-43 T 22-04-2016 RM11_RS03525 daea373b6aaa6ab33446a2a419d091d2 153 PANTHER PTHR11803 1 152 7.0E-43 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family RM11_RS03525 daea373b6aaa6ab33446a2a419d091d2 153 Gene3D G3DSA:3.30.1330.40 3 152 4.1E-62 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RM11_RS03525 daea373b6aaa6ab33446a2a419d091d2 153 SUPERFAMILY SSF55298 4 152 6.75E-54 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RM11_RS06720 47d3b27f5659806c5c99b48d638e99dd 178 Pfam PF02974 Protease inhibitor Inh 90 178 1.0E-13 T 22-04-2016 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 RM11_RS06720 47d3b27f5659806c5c99b48d638e99dd 178 SUPERFAMILY SSF50882 90 178 1.88E-13 T 22-04-2016 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 RM11_RS06720 47d3b27f5659806c5c99b48d638e99dd 178 PIRSF PIRSF034005 1 178 5.1E-87 T 22-04-2016 IPR010571 Outer membrane lipoprotein, Omp19, bacterial GO:0019867 RM11_RS05500 0a6e4af7d6e6c4eb9dc6cf90230e9f31 372 TIGRFAM TIGR04387 capsid_maj_N4: major capsid protein, N4-gp56 family 12 350 6.0E-26 T 22-04-2016 RM11_RS05500 0a6e4af7d6e6c4eb9dc6cf90230e9f31 372 Pfam PF13252 Protein of unknown function (DUF4043) 39 367 2.1E-81 T 22-04-2016 IPR025267 Protein of unknown function DUF4043 RM11_RS06010 90749b404465c9efc699ea4f036673ed 85 Hamap MF_00797 UPF0335 protein . 7 84 22.277 T 22-04-2016 IPR018753 Azospirillum phage Cd, Gp10 RM11_RS06010 90749b404465c9efc699ea4f036673ed 85 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 14 83 7.7E-33 T 22-04-2016 IPR018753 Azospirillum phage Cd, Gp10 RM11_RS05025 6cf9abb122767afda3698c2a529e28c3 68 PANTHER PTHR33505 7 64 8.0E-18 T 22-04-2016 RM11_RS05025 6cf9abb122767afda3698c2a529e28c3 68 Gene3D G3DSA:2.20.25.10 13 64 3.8E-22 T 22-04-2016 RM11_RS05025 6cf9abb122767afda3698c2a529e28c3 68 Pfam PF03966 Trm112p-like protein 7 46 1.1E-6 T 22-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 RM11_RS05025 6cf9abb122767afda3698c2a529e28c3 68 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 6 59 24.707 T 22-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 RM11_RS05025 6cf9abb122767afda3698c2a529e28c3 68 SUPERFAMILY SSF158997 4 60 3.14E-18 T 22-04-2016 RM11_RS01745 674af447a29df190c8e0b88bacc967da 237 Pfam PF07886 BA14K-like protein 204 233 2.2E-12 T 22-04-2016 IPR012413 BA14k family GO:0009405 RM11_RS02780 ad339268d7361fa82c5c0993ba8f476f 185 Pfam PF02620 Uncharacterized ACR, COG1399 70 158 2.2E-5 T 22-04-2016 IPR003772 Protein of unknown function DUF177 RM11_RS06580 7ef5281d5d5d9a94c699581531c2ad25 287 Pfam PF08543 Phosphomethylpyrimidine kinase 22 278 4.2E-85 T 22-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 RM11_RS06580 7ef5281d5d5d9a94c699581531c2ad25 287 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 15 280 2.8E-83 T 22-04-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RM11_RS06580 7ef5281d5d5d9a94c699581531c2ad25 287 Gene3D G3DSA:3.40.1190.20 12 280 5.3E-92 T 22-04-2016 IPR029056 Ribokinase-like RM11_RS06580 7ef5281d5d5d9a94c699581531c2ad25 287 SUPERFAMILY SSF53613 12 284 9.2E-73 T 22-04-2016 IPR029056 Ribokinase-like RM11_RS00215 076efb9f451c0241de155e60ac75c4aa 1548 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1202 1548 1.5E-48 T 22-04-2016 IPR007452 Translocation and assembly module TamB RM11_RS01835 2ecd4e7052bc9b51d9034bb881e08121 185 Gene3D G3DSA:2.60.120.20 19 105 7.5E-4 T 22-04-2016 IPR029053 Viral coat protein subunit RM11_RS01835 2ecd4e7052bc9b51d9034bb881e08121 185 Pfam PF06776 Invasion associated locus B (IalB) protein 50 183 4.2E-27 T 22-04-2016 IPR010642 Invasion protein B RM11_RS02380 ca3ffde71ba183579fc942db2a1075ae 148 Pfam PF04364 DNA polymerase III chi subunit, HolC 3 133 1.1E-25 T 22-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RM11_RS02380 ca3ffde71ba183579fc942db2a1075ae 148 Gene3D G3DSA:3.40.50.10110 3 138 3.2E-32 T 22-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RM11_RS02380 ca3ffde71ba183579fc942db2a1075ae 148 SUPERFAMILY SSF102400 2 138 1.57E-36 T 22-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RM11_RS04700 ec7dce9309c95b381af11ea9a6f82c1c 91 SUPERFAMILY SSF48295 12 90 2.62E-21 T 22-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RM11_RS04700 ec7dce9309c95b381af11ea9a6f82c1c 91 Gene3D G3DSA:1.10.10.10 10 91 4.0E-39 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RM11_RS04700 ec7dce9309c95b381af11ea9a6f82c1c 91 Pfam PF06627 Protein of unknown function (DUF1153) 7 90 2.7E-42 T 22-04-2016 IPR009534 Protein of unknown function DUF1153 RM11_RS04505 a14776f693d6d028276412e8cc4e1b84 350 Pfam PF04332 Protein of unknown function (DUF475) 54 338 3.3E-97 T 22-04-2016 IPR007427 Protein of unknown function DUF475 RM11_RS05985 41b5d17dafd8eddbf416c7146c285b42 91 Pfam PF13747 Domain of unknown function (DUF4164) 8 91 2.9E-21 T 22-04-2016 IPR025310 Protein of unknown function DUF4164 RM11_RS00690 2ff557d3ab3528082241c19b9b92b70a 190 Pfam PF06776 Invasion associated locus B (IalB) protein 58 188 8.7E-19 T 22-04-2016 IPR010642 Invasion protein B RM11_RS03150 8134bb6ffbfc02df59c5de3e0d63a7e0 70 Pfam PF11324 Protein of unknown function (DUF3126) 5 67 4.5E-31 T 22-04-2016 IPR021473 Protein of unknown function DUF3126 RM11_RS01985 f9b92b37dd1a1253491ca27218594de1 261 Pfam PF07386 Protein of unknown function (DUF1499) 109 247 7.7E-21 T 22-04-2016 IPR010865 Protein of unknown function DUF1499 RM11_RS00065 ac18d7567e51d0098583ae2d16559786 89 Pfam PF06305 Protein of unknown function (DUF1049) 26 86 3.9E-7 T 22-04-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 RM11_RS05915 d63806078f1afee72f4cf087e40bcb31 172 Pfam PF07323 Protein of unknown function (DUF1465) 18 169 2.5E-38 T 22-04-2016 IPR010848 Protein of unknown function DUF1465 RM11_RS01235 935bc6d25f5b82278288a22a15440070 82 SUPERFAMILY SSF55961 7 77 7.14E-11 T 22-04-2016 RM11_RS02510 7f60ba68febda5154610c5e98319d1da 134 Pfam PF05154 TM2 domain 64 117 5.3E-13 T 22-04-2016 IPR007829 TM2 domain RM11_RS05510 3638f373f5622273651ad5dc27650d35 609 Pfam PF16510 Phage P22-like portal protein 29 544 2.7E-10 T 22-04-2016 IPR032427 Phage P22-like portal protein RM11_RS05510 3638f373f5622273651ad5dc27650d35 609 SUPERFAMILY SSF48208 16 129 2.52E-8 T 22-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 RM11_RS01270 3d86b7f2fa54ff765c5f147b92606988 78 Pfam PF09866 Uncharacterized protein conserved in bacteria (DUF2093) 20 61 1.0E-18 T 22-04-2016 IPR018661 Protein of unknown function DUF2093 RM11_RS02515 2bed9dd1383931cd50fff8c2392d22a6 109 Pfam PF04977 Septum formation initiator 24 102 2.2E-16 T 22-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 RM11_RS04250 2f58e3496e277af5c557d2b48e6db3e9 317 PANTHER PTHR34697:SF2 1 315 9.8E-44 T 22-04-2016 RM11_RS04250 2f58e3496e277af5c557d2b48e6db3e9 317 PANTHER PTHR34697 1 315 9.8E-44 T 22-04-2016 RM11_RS04250 2f58e3496e277af5c557d2b48e6db3e9 317 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 13 294 8.0E-16 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RM11_RS02235 17c0259be333928a03795b51b1cc9214 121 Pfam PF09539 Protein of unknown function (DUF2385) 27 118 4.1E-30 T 22-04-2016 IPR012645 Conserved hypothetical protein CHP02301 RM11_RS02235 17c0259be333928a03795b51b1cc9214 121 TIGRFAM TIGR02301 TIGR02301: TIGR02301 family protein 19 117 8.6E-34 T 22-04-2016 IPR012645 Conserved hypothetical protein CHP02301 RM11_RS02775 098923b8cb746329dd8d91b798eca7b3 159 Pfam PF04355 SmpA / OmlA family 42 117 5.0E-15 T 22-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 RM11_RS01160 b12ae5699b0007b972d7dc32d07162f1 286 Pfam PF07486 Cell Wall Hydrolase 65 163 1.0E-18 T 22-04-2016 IPR011105 Cell wall hydrolase, SleB GO:0016787 RM11_RS06230 169cc08460b7ac094f54fd814e4da449 106 Pfam PF04956 TrbC/VIRB2 family 2 102 2.5E-23 T 22-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RM11_RS04460 7d6b87f0e1177bd74496dec6d17657af 134 ProDom PD201674 DIVISION CELL RP568 MEMBRANE TRANSMEMBRANE FTSL 4 109 4.0E-4 T 22-04-2016 RM11_RS03465 4bc074e0709d892f215c41f5cbda5faa 290 Pfam PF06230 Protein of unknown function (DUF1009) 66 281 5.7E-65 T 22-04-2016 IPR010415 Protein of unknown function DUF1009 RM11_RS04340 d7b67368609855f8a98891183393e69f 181 SUPERFAMILY SSF101738 4 117 7.45E-42 T 22-04-2016 IPR007481 Stringent starvation protein B RM11_RS04340 d7b67368609855f8a98891183393e69f 181 Gene3D G3DSA:2.30.30.220 1 117 1.6E-52 T 22-04-2016 IPR007481 Stringent starvation protein B RM11_RS04340 d7b67368609855f8a98891183393e69f 181 Pfam PF04386 Stringent starvation protein B 11 174 2.7E-46 T 22-04-2016 IPR007481 Stringent starvation protein B RM11_RS01575 27c9b6213d4e8b51f479167212e1d8fc 188 Hamap MF_01398 ATP synthase subunit b [atpF]. 32 186 10.096 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RM11_RS01575 27c9b6213d4e8b51f479167212e1d8fc 188 Pfam PF00430 ATP synthase B/B' CF(0) 41 170 5.1E-22 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RM11_RS01945 784d0e939dd618b523328ac6feb2775e 125 ProDom PD102069 BLL3070 ATU0920 MEMBRANE AGR_C_1676P PRECURSOR TRANSMEMBRANE R01001 MLL7648 SIGNAL 53 91 0.005 T 22-04-2016 RM11_RS05235 96818c9ef1c397781055c0372a169b44 385 Pfam PF03743 Bacterial conjugation TrbI-like protein 178 352 1.1E-49 T 22-04-2016 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI RM11_RS06280 ba9642375d7a6a6ec58f713660a0bf46 294 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 40 259 7.2E-48 T 22-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RM11_RS05200 41a66efea25590328df40893ac9b1c58 103 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 3 85 1.1E-25 T 22-04-2016 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB RM11_RS04185 ff9ebe614850c5e4bd195c16698a771b 190 Pfam PF10691 Protein of unknown function (DUF2497) 150 185 1.4E-6 T 22-04-2016 IPR019632 Protein of unknown function DUF2497