locus-tag class description BQ_RS00005 PF03618 Kinase/pyrophosphorylase BQ_RS00010 PF02545 Maf-like protein BQ_RS00015 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BQ_RS00015 PF01488 Shikimate / quinate 5-dehydrogenase BQ_RS00015 PF08501 Shikimate dehydrogenase substrate binding domain BQ_RS00020 PF01121 Dephospho-CoA kinase BQ_RS00025 PF00929 Exonuclease BQ_RS00030 PF01612 3'-5' exonuclease BQ_RS00030 PF00476 DNA polymerase family A BQ_RS00030 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BQ_RS00030 PF01367 5'-3' exonuclease, C-terminal SAM fold BQ_RS00040 PF01027 Inhibitor of apoptosis-promoting Bax1 BQ_RS00045 PF01252 Signal peptidase (SPase) II BQ_RS00050 PF00588 SpoU rRNA Methylase family BQ_RS00065 PF00216 Bacterial DNA-binding protein BQ_RS00080 PF00005 ABC transporter BQ_RS00085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BQ_RS00095 PF04055 Radical SAM superfamily BQ_RS00110 PF01921 tRNA synthetases class I (K) BQ_RS00115 PF16658 Class II release factor RF3, C-terminal domain BQ_RS00115 PF03144 Elongation factor Tu domain 2 BQ_RS00115 PF00009 Elongation factor Tu GTP binding domain BQ_RS00120 PF00085 Thioredoxin BQ_RS00125 PF12705 PD-(D/E)XK nuclease superfamily BQ_RS00125 PF00580 UvrD/REP helicase N-terminal domain BQ_RS00125 PF13361 UvrD-like helicase C-terminal domain BQ_RS00140 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BQ_RS00145 PF00512 His Kinase A (phospho-acceptor) domain BQ_RS00145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS00150 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BQ_RS00150 PF05221 S-adenosyl-L-homocysteine hydrolase BQ_RS00155 PF13460 NAD(P)H-binding BQ_RS00155 PF11066 Protein of unknown function (DUF2867) BQ_RS00160 PF08245 Mur ligase middle domain BQ_RS00165 PF01039 Carboxyl transferase domain BQ_RS00175 PF02441 Flavoprotein BQ_RS00175 PF04127 DNA / pantothenate metabolism flavoprotein BQ_RS00180 PF03109 ABC1 family BQ_RS00185 PF01209 ubiE/COQ5 methyltransferase family BQ_RS00190 PF00986 DNA gyrase B subunit, carboxyl terminus BQ_RS00190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS00190 PF01751 Toprim domain BQ_RS00190 PF00204 DNA gyrase B BQ_RS00205 PF13335 Magnesium chelatase, subunit ChlI C-terminal BQ_RS00205 PF01078 Magnesium chelatase, subunit ChlI BQ_RS00210 PF01103 Surface antigen BQ_RS00210 PF07244 Surface antigen variable number repeat BQ_RS00210 PF17243 POTRA domain TamA domain 1 BQ_RS00220 PF00005 ABC transporter BQ_RS00220 PF00664 ABC transporter transmembrane region BQ_RS00225 PF00707 Translation initiation factor IF-3, C-terminal domain BQ_RS00225 PF05198 Translation initiation factor IF-3, N-terminal domain BQ_RS00240 PF01546 Peptidase family M20/M25/M40 BQ_RS00240 PF07687 Peptidase dimerisation domain BQ_RS00245 PF04055 Radical SAM superfamily BQ_RS00245 PF06969 HemN C-terminal domain BQ_RS00250 PF01725 Ham1 family BQ_RS00255 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BQ_RS00255 PF01628 HrcA protein C terminal domain BQ_RS00260 PF01025 GrpE BQ_RS00270 PF00381 PTS HPr component phosphorylation site BQ_RS00275 PF03830 PTS system sorbose subfamily IIB component BQ_RS00275 PF03610 PTS system fructose IIA component BQ_RS00285 PF00672 HAMP domain BQ_RS00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS00285 PF13756 Stimulus-sensing domain BQ_RS00285 PF13755 Sensor N-terminal transmembrane domain BQ_RS00285 PF00512 His Kinase A (phospho-acceptor) domain BQ_RS00290 PF00072 Response regulator receiver domain BQ_RS00290 PF00486 Transcriptional regulatory protein, C terminal BQ_RS00295 PF04972 BON domain BQ_RS00295 PF01476 LysM domain BQ_RS00305 PF00012 Hsp70 protein BQ_RS00310 PF01556 DnaJ C terminal domain BQ_RS00310 PF00226 DnaJ domain BQ_RS00310 PF00684 DnaJ central domain BQ_RS00315 PF00696 Amino acid kinase family BQ_RS00320 PF00892 EamA-like transporter family BQ_RS00325 PF03144 Elongation factor Tu domain 2 BQ_RS00325 PF00679 Elongation factor G C-terminus BQ_RS00325 PF06421 GTP-binding protein LepA C-terminus BQ_RS00325 PF00009 Elongation factor Tu GTP binding domain BQ_RS00330 PF00132 Bacterial transferase hexapeptide (six repeats) BQ_RS00330 PF14602 Hexapeptide repeat of succinyl-transferase BQ_RS00330 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BQ_RS00340 PF01416 tRNA pseudouridine synthase BQ_RS00345 PF02911 Formyl transferase, C-terminal domain BQ_RS00345 PF00551 Formyl transferase BQ_RS00350 PF01327 Polypeptide deformylase BQ_RS00355 PF02646 RmuC family BQ_RS00375 PF00011 Hsp20/alpha crystallin family BQ_RS00380 PF00633 Helix-hairpin-helix motif BQ_RS00380 PF10576 Iron-sulfur binding domain of endonuclease III BQ_RS00380 PF00730 HhH-GPD superfamily base excision DNA repair protein BQ_RS00385 PF01632 Ribosomal protein L35 BQ_RS00390 PF00453 Ribosomal protein L20 BQ_RS00395 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BQ_RS00395 PF01409 tRNA synthetases class II core domain (F) BQ_RS00400 PF01588 Putative tRNA binding domain BQ_RS00400 PF03147 Ferredoxin-fold anticodon binding domain BQ_RS00400 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BQ_RS00400 PF03483 B3/4 domain BQ_RS00400 PF03484 tRNA synthetase B5 domain BQ_RS00405 PF01297 Zinc-uptake complex component A periplasmic BQ_RS00410 PF00005 ABC transporter BQ_RS00415 PF00950 ABC 3 transport family BQ_RS00420 PF00950 ABC 3 transport family BQ_RS00425 PF04304 Protein of unknown function (DUF454) BQ_RS00430 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BQ_RS00430 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BQ_RS00435 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BQ_RS00435 PF10091 Putative glucoamylase BQ_RS00435 PF06165 Glycosyltransferase family 36 BQ_RS00440 PF00575 S1 RNA binding domain BQ_RS00445 PF02224 Cytidylate kinase BQ_RS00450 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BQ_RS00475 PF01624 MutS domain I BQ_RS00475 PF05188 MutS domain II BQ_RS00475 PF05190 MutS family domain IV BQ_RS00475 PF05192 MutS domain III BQ_RS00475 PF00488 MutS domain V BQ_RS00480 PF01515 Phosphate acetyl/butaryl transferase BQ_RS00480 PF03949 Malic enzyme, NAD binding domain BQ_RS00480 PF00390 Malic enzyme, N-terminal domain BQ_RS00485 PF02556 Preprotein translocase subunit SecB BQ_RS00490 PF04186 FxsA cytoplasmic membrane protein BQ_RS00505 PF01430 Hsp33 protein BQ_RS00515 PF00202 Aminotransferase class-III BQ_RS00525 PF08534 Redoxin BQ_RS00535 PF01578 Cytochrome C assembly protein BQ_RS00540 PF03379 CcmB protein BQ_RS00545 PF00005 ABC transporter BQ_RS00550 PF00694 Aconitase C-terminal domain BQ_RS00550 PF00330 Aconitase family (aconitate hydratase) BQ_RS00555 PF01649 Ribosomal protein S20 BQ_RS00560 PF08299 Bacterial dnaA protein helix-turn-helix BQ_RS00560 PF11638 DnaA N-terminal domain BQ_RS00560 PF00308 Bacterial dnaA protein BQ_RS00565 PF02768 DNA polymerase III beta subunit, C-terminal domain BQ_RS00565 PF02767 DNA polymerase III beta subunit, central domain BQ_RS00565 PF00712 DNA polymerase III beta subunit, N-terminal domain BQ_RS00570 PF02463 RecF/RecN/SMC N terminal domain BQ_RS00575 PF01220 Dehydroquinase class II BQ_RS00580 PF06481 COX Aromatic Rich Motif BQ_RS00580 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BQ_RS00585 PF00115 Cytochrome C and Quinol oxidase polypeptide I BQ_RS00590 PF00510 Cytochrome c oxidase subunit III BQ_RS00595 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BQ_RS00600 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BQ_RS00600 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BQ_RS00610 PF00109 Beta-ketoacyl synthase, N-terminal domain BQ_RS00610 PF02801 Beta-ketoacyl synthase, C-terminal domain BQ_RS00615 PF07977 FabA-like domain BQ_RS00630 PF01165 Ribosomal protein S21 BQ_RS00650 PF00873 AcrB/AcrD/AcrF family BQ_RS00655 PF00342 Phosphoglucose isomerase BQ_RS00665 PF00829 Ribosomal prokaryotic L21 protein BQ_RS00670 PF01016 Ribosomal L27 protein BQ_RS00675 PF02896 PEP-utilising enzyme, TIM barrel domain BQ_RS00675 PF05524 PEP-utilising enzyme, N-terminal BQ_RS00675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BQ_RS00675 PF00391 PEP-utilising enzyme, mobile domain BQ_RS00675 PF00381 PTS HPr component phosphorylation site BQ_RS00690 PF05662 Coiled stalk of trimeric autotransporter adhesin BQ_RS00690 PF05658 Head domain of trimeric autotransporter adhesin BQ_RS00690 PF03895 YadA-like membrane anchor domain BQ_RS00690 PF05662 Coiled stalk of trimeric autotransporter adhesin BQ_RS00690 PF03895 YadA-like membrane anchor domain BQ_RS00690 PF05658 Head domain of trimeric autotransporter adhesin BQ_RS00695 PF03895 YadA-like membrane anchor domain BQ_RS00695 PF05658 Head domain of trimeric autotransporter adhesin BQ_RS00695 PF05662 Coiled stalk of trimeric autotransporter adhesin BQ_RS00695 PF03895 YadA-like membrane anchor domain BQ_RS00695 PF05658 Head domain of trimeric autotransporter adhesin BQ_RS00695 PF05662 Coiled stalk of trimeric autotransporter adhesin BQ_RS00700 PF03895 YadA-like membrane anchor domain BQ_RS00700 PF05662 Coiled stalk of trimeric autotransporter adhesin BQ_RS00700 PF05658 Head domain of trimeric autotransporter adhesin BQ_RS00710 PF05662 Coiled stalk of trimeric autotransporter adhesin BQ_RS00710 PF05658 Head domain of trimeric autotransporter adhesin BQ_RS00710 PF03895 YadA-like membrane anchor domain BQ_RS00725 PF01728 FtsJ-like methyltransferase BQ_RS00730 PF01018 GTP1/OBG BQ_RS00730 PF01926 50S ribosome-binding GTPase BQ_RS00735 PF01472 PUA domain BQ_RS00735 PF00696 Amino acid kinase family BQ_RS00740 PF00171 Aldehyde dehydrogenase family BQ_RS00745 PF01467 Cytidylyltransferase-like BQ_RS00765 PF13180 PDZ domain BQ_RS00765 PF03572 Peptidase family S41 BQ_RS00770 PF00293 NUDIX domain BQ_RS00775 PF06776 Invasion associated locus B (IalB) protein BQ_RS00780 PF02325 YGGT family BQ_RS00785 PF02594 Uncharacterised ACR, YggU family COG1872 BQ_RS00790 PF00719 Inorganic pyrophosphatase BQ_RS00795 PF00679 Elongation factor G C-terminus BQ_RS00795 PF03144 Elongation factor Tu domain 2 BQ_RS00795 PF00009 Elongation factor Tu GTP binding domain BQ_RS00805 PF01769 Divalent cation transporter BQ_RS00805 PF00571 CBS domain BQ_RS00805 PF03448 MgtE intracellular N domain BQ_RS00820 PF13406 Transglycosylase SLT domain BQ_RS00825 PF00483 Nucleotidyl transferase BQ_RS00830 PF01380 SIS domain BQ_RS00830 PF00571 CBS domain BQ_RS00840 PF00158 Sigma-54 interaction domain BQ_RS00840 PF02954 Bacterial regulatory protein, Fis family BQ_RS00840 PF00072 Response regulator receiver domain BQ_RS00845 PF13091 PLD-like domain BQ_RS00850 PF00478 IMP dehydrogenase / GMP reductase domain BQ_RS00850 PF00571 CBS domain BQ_RS00855 PF01189 16S rRNA methyltransferase RsmB/F BQ_RS00855 PF01029 NusB family BQ_RS00860 PF02540 NAD synthase BQ_RS00860 PF00958 GMP synthase C terminal domain BQ_RS00860 PF00117 Glutamine amidotransferase class-I BQ_RS00865 PF03009 Glycerophosphoryl diester phosphodiesterase family BQ_RS00870 PF00005 ABC transporter BQ_RS00875 PF00528 Binding-protein-dependent transport system inner membrane component BQ_RS00880 PF00528 Binding-protein-dependent transport system inner membrane component BQ_RS00885 PF13416 Bacterial extracellular solute-binding protein BQ_RS00890 PF01297 Zinc-uptake complex component A periplasmic BQ_RS00895 PF00950 ABC 3 transport family BQ_RS00900 PF00005 ABC transporter BQ_RS00910 PF07972 NrdI Flavodoxin like BQ_RS00915 PF02867 Ribonucleotide reductase, barrel domain BQ_RS00915 PF08343 Ribonucleotide reductase N-terminal BQ_RS00915 PF00317 Ribonucleotide reductase, all-alpha domain BQ_RS00920 PF00268 Ribonucleotide reductase, small chain BQ_RS00925 PF05175 Methyltransferase small domain BQ_RS00925 PF17827 PrmC N-terminal domain BQ_RS00930 PF00472 RF-1 domain BQ_RS00930 PF03462 PCRF domain BQ_RS00935 PF01475 Ferric uptake regulator family BQ_RS00940 PF02810 SEC-C motif BQ_RS00940 PF07517 SecA DEAD-like domain BQ_RS00940 PF01043 SecA preprotein cross-linking domain BQ_RS00940 PF07516 SecA Wing and Scaffold domain BQ_RS00945 PF00639 PPIC-type PPIASE domain BQ_RS00950 PF01960 ArgJ family BQ_RS00955 PF00293 NUDIX domain BQ_RS00960 PF00877 NlpC/P60 family BQ_RS00960 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BQ_RS00965 PF02789 Cytosol aminopeptidase family, N-terminal domain BQ_RS00965 PF00883 Cytosol aminopeptidase family, catalytic domain BQ_RS00970 PF00485 Phosphoribulokinase / Uridine kinase family BQ_RS00975 PF00710 Asparaginase, N-terminal BQ_RS00975 PF17763 Glutaminase/Asparaginase C-terminal domain BQ_RS00980 PF00227 Proteasome subunit BQ_RS00985 PF10431 C-terminal, D2-small domain, of ClpB protein BQ_RS00985 PF07724 AAA domain (Cdc48 subfamily) BQ_RS00985 PF00004 ATPase family associated with various cellular activities (AAA) BQ_RS00990 PF08468 Methyltransferase small domain N-terminal BQ_RS00990 PF05175 Methyltransferase small domain BQ_RS00995 PF00013 KH domain BQ_RS00995 PF03725 3' exoribonuclease family, domain 2 BQ_RS00995 PF01138 3' exoribonuclease family, domain 1 BQ_RS00995 PF00575 S1 RNA binding domain BQ_RS00995 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BQ_RS01000 PF00312 Ribosomal protein S15 BQ_RS01010 PF07690 Major Facilitator Superfamily BQ_RS01015 PF16198 tRNA pseudouridylate synthase B C-terminal domain BQ_RS01015 PF01509 TruB family pseudouridylate synthase (N terminal domain) BQ_RS01020 PF02033 Ribosome-binding factor A BQ_RS01025 PF00009 Elongation factor Tu GTP binding domain BQ_RS01025 PF08364 Bacterial translation initiation factor IF-2 associated region BQ_RS01025 PF03144 Elongation factor Tu domain 2 BQ_RS01025 PF11987 Translation-initiation factor 2 BQ_RS01025 PF04760 Translation initiation factor IF-2, N-terminal region BQ_RS01035 PF00575 S1 RNA binding domain BQ_RS01035 PF08529 NusA N-terminal domain BQ_RS01035 PF13184 NusA-like KH domain BQ_RS01040 PF02576 RimP N-terminal domain BQ_RS01040 PF17384 RimP C-terminal SH3 domain BQ_RS01045 PF02390 Putative methyltransferase BQ_RS01050 PF00438 S-adenosylmethionine synthetase, N-terminal domain BQ_RS01050 PF02772 S-adenosylmethionine synthetase, central domain BQ_RS01050 PF02773 S-adenosylmethionine synthetase, C-terminal domain BQ_RS01055 PF01381 Helix-turn-helix BQ_RS01060 PF00795 Carbon-nitrogen hydrolase BQ_RS01065 PF03471 Transporter associated domain BQ_RS01065 PF00571 CBS domain BQ_RS01070 PF02130 Uncharacterized protein family UPF0054 BQ_RS01075 PF02562 PhoH-like protein BQ_RS01080 PF00919 Uncharacterized protein family UPF0004 BQ_RS01080 PF04055 Radical SAM superfamily BQ_RS01090 PF00814 Glycoprotease family BQ_RS01095 PF13662 Toprim domain BQ_RS01095 PF02132 RecR protein BQ_RS01100 PF02575 YbaB/EbfC DNA-binding family BQ_RS01105 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BQ_RS01105 PF12169 DNA polymerase III subunits gamma and tau domain III BQ_RS01105 PF12170 DNA polymerase III tau subunit V interacting with alpha BQ_RS01120 PF02348 Cytidylyltransferase BQ_RS01125 PF00034 Cytochrome c BQ_RS01145 PF00581 Rhodanese-like domain BQ_RS01145 PF00899 ThiF family BQ_RS01150 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BQ_RS01150 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BQ_RS01160 PF00528 Binding-protein-dependent transport system inner membrane component BQ_RS01165 PF00528 Binding-protein-dependent transport system inner membrane component BQ_RS01170 PF00005 ABC transporter BQ_RS01175 PF01895 PhoU domain BQ_RS01185 PF02073 Thermophilic metalloprotease (M29) BQ_RS01190 PF06827 Zinc finger found in FPG and IleRS BQ_RS01190 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BQ_RS01190 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BQ_RS01215 PF13505 Outer membrane protein beta-barrel domain BQ_RS01220 PF13505 Outer membrane protein beta-barrel domain BQ_RS01225 PF13505 Outer membrane protein beta-barrel domain BQ_RS01230 PF08264 Anticodon-binding domain of tRNA BQ_RS01230 PF00133 tRNA synthetases class I (I, L, M and V) BQ_RS01240 PF14437 MafB19-like deaminase BQ_RS01245 PF00849 RNA pseudouridylate synthase BQ_RS01245 PF01479 S4 domain BQ_RS01260 PF01523 Putative modulator of DNA gyrase BQ_RS01265 PF00459 Inositol monophosphatase family BQ_RS01275 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BQ_RS01280 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BQ_RS01290 PF08676 MutL C terminal dimerisation domain BQ_RS01290 PF01119 DNA mismatch repair protein, C-terminal domain BQ_RS01295 PF00692 dUTPase BQ_RS01300 PF01070 FMN-dependent dehydrogenase BQ_RS01340 PF00324 Amino acid permease BQ_RS01345 PF00005 ABC transporter BQ_RS01350 PF02361 Cobalt transport protein BQ_RS01355 PF02632 BioY family BQ_RS01390 PF00709 Adenylosuccinate synthetase BQ_RS01400 PF04545 Sigma-70, region 4 BQ_RS01400 PF04542 Sigma-70 region 2 BQ_RS01400 PF00140 Sigma-70 factor, region 1.2 BQ_RS01405 PF00849 RNA pseudouridylate synthase BQ_RS01410 PF00171 Aldehyde dehydrogenase family BQ_RS01415 PF01580 FtsK/SpoIIIE family BQ_RS01415 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BQ_RS01415 PF17854 FtsK alpha domain BQ_RS01415 PF09397 Ftsk gamma domain BQ_RS01425 PF13188 PAS domain BQ_RS01425 PF13426 PAS domain BQ_RS01425 PF00512 His Kinase A (phospho-acceptor) domain BQ_RS01425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS01425 PF00989 PAS fold BQ_RS01430 PF01741 Large-conductance mechanosensitive channel, MscL BQ_RS01435 PF01180 Dihydroorotate dehydrogenase BQ_RS01445 PF00120 Glutamine synthetase, catalytic domain BQ_RS01450 PF01266 FAD dependent oxidoreductase BQ_RS01455 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BQ_RS01455 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BQ_RS01460 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BQ_RS01470 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BQ_RS01470 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BQ_RS01480 PF04452 RNA methyltransferase BQ_RS01485 PF04107 Glutamate-cysteine ligase family 2(GCS2) BQ_RS01495 PF00375 Sodium:dicarboxylate symporter family BQ_RS01510 PF00462 Glutaredoxin BQ_RS01520 PF01842 ACT domain BQ_RS01520 PF00696 Amino acid kinase family BQ_RS01520 PF13840 ACT domain BQ_RS01530 PF06965 Na+/H+ antiporter 1 BQ_RS01540 PF03600 Citrate transporter BQ_RS01540 PF02080 TrkA-C domain BQ_RS01550 PF01926 50S ribosome-binding GTPase BQ_RS01550 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BQ_RS01560 PF00119 ATP synthase A chain BQ_RS01565 PF00137 ATP synthase subunit C BQ_RS01570 PF00430 ATP synthase B/B' CF(0) BQ_RS01575 PF00430 ATP synthase B/B' CF(0) BQ_RS01580 PF05746 DALR anticodon binding domain BQ_RS01580 PF02092 Glycyl-tRNA synthetase beta subunit BQ_RS01585 PF02091 Glycyl-tRNA synthetase alpha subunit BQ_RS01595 PF00348 Polyprenyl synthetase BQ_RS01600 PF05175 Methyltransferase small domain BQ_RS01600 PF08468 Methyltransferase small domain N-terminal BQ_RS01605 PF06965 Na+/H+ antiporter 1 BQ_RS01605 PF01343 Peptidase family S49 BQ_RS01610 PF08544 GHMP kinases C terminal BQ_RS01625 PF01926 50S ribosome-binding GTPase BQ_RS01625 PF06071 Protein of unknown function (DUF933) BQ_RS01630 PF17969 L,D-transpeptidase C-terminal domain BQ_RS01630 PF03734 L,D-transpeptidase catalytic domain BQ_RS01640 PF01195 Peptidyl-tRNA hydrolase BQ_RS01645 PF14693 Ribosomal protein TL5, C-terminal domain BQ_RS01645 PF01386 Ribosomal L25p family BQ_RS01665 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BQ_RS01665 PF14572 Phosphoribosyl synthetase-associated domain BQ_RS01675 PF02578 Multi-copper polyphenol oxidoreductase laccase BQ_RS01685 PF01790 Prolipoprotein diacylglyceryl transferase BQ_RS01700 PF00672 HAMP domain BQ_RS01700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS01700 PF00512 His Kinase A (phospho-acceptor) domain BQ_RS01705 PF00072 Response regulator receiver domain BQ_RS01705 PF00486 Transcriptional regulatory protein, C terminal BQ_RS01710 PF00753 Metallo-beta-lactamase superfamily BQ_RS01725 PF01351 Ribonuclease HII BQ_RS01730 PF01300 Telomere recombination BQ_RS01735 PF01565 FAD binding domain BQ_RS01735 PF02913 FAD linked oxidases, C-terminal domain BQ_RS01745 PF02843 Phosphoribosylglycinamide synthetase, C domain BQ_RS01745 PF02844 Phosphoribosylglycinamide synthetase, N domain BQ_RS01745 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BQ_RS01750 PF01040 UbiA prenyltransferase family BQ_RS01755 PF01243 Pyridoxamine 5'-phosphate oxidase BQ_RS01755 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BQ_RS01760 PF01556 DnaJ C terminal domain BQ_RS01760 PF00226 DnaJ domain BQ_RS01770 PF01264 Chorismate synthase BQ_RS01775 PF00925 GTP cyclohydrolase II BQ_RS01775 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BQ_RS01780 PF02609 Exonuclease VII small subunit BQ_RS01785 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BQ_RS01785 PF02779 Transketolase, pyrimidine binding domain BQ_RS01785 PF02780 Transketolase, C-terminal domain BQ_RS01805 PF01523 Putative modulator of DNA gyrase BQ_RS01815 PF01040 UbiA prenyltransferase family BQ_RS01820 PF02401 LytB protein BQ_RS01830 PF00075 RNase H BQ_RS01845 PF02622 Uncharacterized ACR, COG1678 BQ_RS01850 PF00990 Diguanylate cyclase, GGDEF domain BQ_RS01850 PF13185 GAF domain BQ_RS01850 PF00563 EAL domain BQ_RS01860 PF00675 Insulinase (Peptidase family M16) BQ_RS01860 PF05193 Peptidase M16 inactive domain BQ_RS01885 PF13419 Haloacid dehalogenase-like hydrolase BQ_RS01890 PF18755 Restriction Enzyme Adenine Methylase Associated BQ_RS01890 PF01555 DNA methylase BQ_RS01895 PF00730 HhH-GPD superfamily base excision DNA repair protein BQ_RS01895 PF14815 NUDIX domain BQ_RS01910 PF00391 PEP-utilising enzyme, mobile domain BQ_RS01910 PF02896 PEP-utilising enzyme, TIM barrel domain BQ_RS01910 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BQ_RS01930 PF02657 Fe-S metabolism associated domain BQ_RS01935 PF05443 ROS/MUCR transcriptional regulator protein BQ_RS01940 PF00326 Prolyl oligopeptidase family BQ_RS01940 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BQ_RS01945 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BQ_RS01945 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BQ_RS01980 PF00905 Penicillin binding protein transpeptidase domain BQ_RS01980 PF00912 Transglycosylase BQ_RS01990 PF00486 Transcriptional regulatory protein, C terminal BQ_RS01990 PF00072 Response regulator receiver domain BQ_RS01995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS02005 PF03100 CcmE BQ_RS02010 PF01578 Cytochrome C assembly protein BQ_RS02010 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BQ_RS02015 PF03918 Cytochrome C biogenesis protein BQ_RS02020 PF17820 PDZ domain BQ_RS02020 PF13180 PDZ domain BQ_RS02025 PF00486 Transcriptional regulatory protein, C terminal BQ_RS02025 PF00072 Response regulator receiver domain BQ_RS02030 PF13426 PAS domain BQ_RS02030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS02030 PF00672 HAMP domain BQ_RS02030 PF00512 His Kinase A (phospho-acceptor) domain BQ_RS02035 PF03710 Glutamate-ammonia ligase adenylyltransferase BQ_RS02035 PF08335 GlnD PII-uridylyltransferase BQ_RS02040 PF13505 Outer membrane protein beta-barrel domain BQ_RS02045 PF02805 Metal binding domain of Ada BQ_RS02045 PF12833 Helix-turn-helix domain BQ_RS02045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BQ_RS02045 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BQ_RS02050 PF00989 PAS fold BQ_RS02050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS02050 PF00512 His Kinase A (phospho-acceptor) domain BQ_RS02055 PF11940 Domain of unknown function (DUF3458) Ig-like fold BQ_RS02055 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BQ_RS02055 PF01433 Peptidase family M1 domain BQ_RS02065 PF08543 Phosphomethylpyrimidine kinase BQ_RS02070 PF02581 Thiamine monophosphate synthase BQ_RS02075 PF05690 Thiazole biosynthesis protein ThiG BQ_RS02085 PF01266 FAD dependent oxidoreductase BQ_RS02090 PF13667 ThiC-associated domain BQ_RS02090 PF01964 Radical SAM ThiC family BQ_RS02095 PF00005 ABC transporter BQ_RS02100 PF01032 FecCD transport family BQ_RS02105 PF01497 Periplasmic binding protein BQ_RS02110 PF05171 Haemin-degrading HemS.ChuX domain BQ_RS02115 PF07715 TonB-dependent Receptor Plug Domain BQ_RS02115 PF00593 TonB dependent receptor BQ_RS02130 PF00701 Dihydrodipicolinate synthetase family BQ_RS02135 PF01668 SmpB protein BQ_RS02140 PF03167 Uracil DNA glycosylase superfamily BQ_RS02145 PF01192 RNA polymerase Rpb6 BQ_RS02150 PF02824 TGS domain BQ_RS02150 PF04607 Region found in RelA / SpoT proteins BQ_RS02150 PF13291 ACT domain BQ_RS02155 PF00156 Phosphoribosyl transferase domain BQ_RS02165 PF01648 4'-phosphopantetheinyl transferase superfamily BQ_RS02170 PF10502 Signal peptidase, peptidase S26 BQ_RS02175 PF14622 Ribonuclease-III-like BQ_RS02175 PF00035 Double-stranded RNA binding motif BQ_RS02180 PF01926 50S ribosome-binding GTPase BQ_RS02180 PF07650 KH domain BQ_RS02185 PF11967 Recombination protein O N terminal BQ_RS02185 PF02565 Recombination protein O C terminal BQ_RS02190 PF02569 Pantoate-beta-alanine ligase BQ_RS02195 PF02548 Ketopantoate hydroxymethyltransferase BQ_RS02200 PF01966 HD domain BQ_RS02210 PF01979 Amidohydrolase family BQ_RS02220 PF01406 tRNA synthetases class I (C) catalytic domain BQ_RS02230 PF00664 ABC transporter transmembrane region BQ_RS02230 PF00005 ABC transporter BQ_RS02235 PF02666 Phosphatidylserine decarboxylase BQ_RS02240 PF01066 CDP-alcohol phosphatidyltransferase BQ_RS02245 PF00106 short chain dehydrogenase BQ_RS02250 PF13537 Glutamine amidotransferase domain BQ_RS02250 PF00156 Phosphoribosyl transferase domain BQ_RS02260 PF06745 KaiC BQ_RS02260 PF18073 Rubredoxin metal binding domain BQ_RS02265 PF03796 DnaB-like helicase C terminal domain BQ_RS02265 PF00772 DnaB-like helicase N terminal domain BQ_RS02270 PF01281 Ribosomal protein L9, N-terminal domain BQ_RS02270 PF03948 Ribosomal protein L9, C-terminal domain BQ_RS02280 PF01084 Ribosomal protein S18 BQ_RS02285 PF01250 Ribosomal protein S6 BQ_RS02290 PF01569 PAP2 superfamily BQ_RS02295 PF00698 Acyl transferase domain BQ_RS02305 PF00550 Phosphopantetheine attachment site BQ_RS02310 PF02801 Beta-ketoacyl synthase, C-terminal domain BQ_RS02310 PF00109 Beta-ketoacyl synthase, N-terminal domain BQ_RS02315 PF02618 YceG-like family BQ_RS02320 PF00625 Guanylate kinase BQ_RS02325 PF00398 Ribosomal RNA adenine dimethylase BQ_RS02330 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BQ_RS02340 PF04453 LPS transport system D BQ_RS02340 PF03968 OstA-like protein BQ_RS02365 PF07690 Major Facilitator Superfamily BQ_RS02365 PF00083 Sugar (and other) transporter BQ_RS02370 PF03212 Pertactin BQ_RS02370 PF13018 Extended Signal Peptide of Type V secretion system BQ_RS02370 PF03797 Autotransporter beta-domain BQ_RS02370 PF16168 Adhesin of bacterial autotransporter system, probable stalk BQ_RS02380 PF00334 Nucleoside diphosphate kinase BQ_RS02385 PF01066 CDP-alcohol phosphatidyltransferase BQ_RS02390 PF08459 UvrC Helix-hairpin-helix N-terminal BQ_RS02390 PF02151 UvrB/uvrC motif BQ_RS02390 PF12826 Helix-hairpin-helix motif BQ_RS02390 PF01541 GIY-YIG catalytic domain BQ_RS02395 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BQ_RS02405 PF02416 mttA/Hcf106 family BQ_RS02410 PF02416 mttA/Hcf106 family BQ_RS02415 PF00902 Sec-independent protein translocase protein (TatC) BQ_RS02420 PF02403 Seryl-tRNA synthetase N-terminal domain BQ_RS02420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BQ_RS02430 PF01551 Peptidase family M23 BQ_RS02430 PF01476 LysM domain BQ_RS02435 PF02699 Preprotein translocase subunit BQ_RS02455 PF00121 Triosephosphate isomerase BQ_RS02460 PF03840 Preprotein translocase SecG subunit BQ_RS02465 PF06418 CTP synthase N-terminus BQ_RS02465 PF00117 Glutamine amidotransferase class-I BQ_RS02470 PF00793 DAHP synthetase I family BQ_RS02475 PF00113 Enolase, C-terminal TIM barrel domain BQ_RS02475 PF03952 Enolase, N-terminal domain BQ_RS02490 PF00676 Dehydrogenase E1 component BQ_RS02495 PF02779 Transketolase, pyrimidine binding domain BQ_RS02495 PF00364 Biotin-requiring enzyme BQ_RS02495 PF02780 Transketolase, C-terminal domain BQ_RS02500 PF02817 e3 binding domain BQ_RS02500 PF00364 Biotin-requiring enzyme BQ_RS02500 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BQ_RS02505 PF07992 Pyridine nucleotide-disulphide oxidoreductase BQ_RS02505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BQ_RS02510 PF04055 Radical SAM superfamily BQ_RS02515 PF03364 Polyketide cyclase / dehydrase and lipid transport BQ_RS02520 PF02464 Competence-damaged protein BQ_RS02520 PF00994 Probable molybdopterin binding domain BQ_RS02520 PF18146 Damage-inducible protein CinA KH domain BQ_RS02525 PF02542 YgbB family BQ_RS02525 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BQ_RS02530 PF02082 Transcriptional regulator BQ_RS02535 PF00512 His Kinase A (phospho-acceptor) domain BQ_RS02535 PF00672 HAMP domain BQ_RS02535 PF00989 PAS fold BQ_RS02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS02540 PF00072 Response regulator receiver domain BQ_RS02540 PF00158 Sigma-54 interaction domain BQ_RS02540 PF02954 Bacterial regulatory protein, Fis family BQ_RS02545 PF02080 TrkA-C domain BQ_RS02545 PF02254 TrkA-N domain BQ_RS02555 PF00574 Clp protease BQ_RS02560 PF07724 AAA domain (Cdc48 subfamily) BQ_RS02560 PF10431 C-terminal, D2-small domain, of ClpB protein BQ_RS02560 PF06689 ClpX C4-type zinc finger BQ_RS02565 PF00004 ATPase family associated with various cellular activities (AAA) BQ_RS02565 PF05362 Lon protease (S16) C-terminal proteolytic domain BQ_RS02565 PF02190 ATP-dependent protease La (LON) substrate-binding domain BQ_RS02570 PF00216 Bacterial DNA-binding protein BQ_RS02615 PF00072 Response regulator receiver domain BQ_RS02625 PF00011 Hsp20/alpha crystallin family BQ_RS02650 PF00107 Zinc-binding dehydrogenase BQ_RS02650 PF08240 Alcohol dehydrogenase GroES-like domain BQ_RS02655 PF02801 Beta-ketoacyl synthase, C-terminal domain BQ_RS02655 PF00109 Beta-ketoacyl synthase, N-terminal domain BQ_RS02660 PF02801 Beta-ketoacyl synthase, C-terminal domain BQ_RS02660 PF00109 Beta-ketoacyl synthase, N-terminal domain BQ_RS02665 PF00550 Phosphopantetheine attachment site BQ_RS02670 PF03949 Malic enzyme, NAD binding domain BQ_RS02670 PF00390 Malic enzyme, N-terminal domain BQ_RS02670 PF01515 Phosphate acetyl/butaryl transferase BQ_RS02685 PF17209 Hfq protein BQ_RS02690 PF16360 GTP-binding GTPase Middle Region BQ_RS02690 PF13167 GTP-binding GTPase N-terminal BQ_RS02690 PF01926 50S ribosome-binding GTPase BQ_RS02700 PF02628 Cytochrome oxidase assembly protein BQ_RS02705 PF01118 Semialdehyde dehydrogenase, NAD binding domain BQ_RS02710 PF00464 Serine hydroxymethyltransferase BQ_RS02715 PF03477 ATP cone domain BQ_RS02720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BQ_RS02720 PF01872 RibD C-terminal domain BQ_RS02725 PF00677 Lumazine binding domain BQ_RS02730 PF00885 6,7-dimethyl-8-ribityllumazine synthase BQ_RS02735 PF01029 NusB family BQ_RS02750 PF02504 Fatty acid synthesis protein BQ_RS02755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BQ_RS02755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BQ_RS02760 PF00216 Bacterial DNA-binding protein BQ_RS02765 PF13411 MerR HTH family regulatory protein BQ_RS02770 PF03129 Anticodon binding domain BQ_RS02770 PF02824 TGS domain BQ_RS02770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BQ_RS02770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BQ_RS02775 PF01809 Putative membrane protein insertion efficiency factor BQ_RS02785 PF01227 GTP cyclohydrolase I BQ_RS02830 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BQ_RS02835 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BQ_RS02840 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BQ_RS02845 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BQ_RS02855 PF10531 SLBB domain BQ_RS02855 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BQ_RS02855 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BQ_RS02860 PF00384 Molybdopterin oxidoreductase BQ_RS02860 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BQ_RS02860 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BQ_RS02865 PF00146 NADH dehydrogenase BQ_RS02870 PF12838 4Fe-4S dicluster domain BQ_RS02875 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BQ_RS02880 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BQ_RS02885 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BQ_RS02885 PF00361 Proton-conducting membrane transporter BQ_RS02890 PF00361 Proton-conducting membrane transporter BQ_RS02895 PF00361 Proton-conducting membrane transporter BQ_RS02905 PF12706 Beta-lactamase superfamily domain BQ_RS02905 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BQ_RS02905 PF17770 Ribonuclease J C-terminal domain BQ_RS02910 PF03129 Anticodon binding domain BQ_RS02910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BQ_RS02915 PF12704 MacB-like periplasmic core domain BQ_RS02915 PF02687 FtsX-like permease family BQ_RS02920 PF00005 ABC transporter BQ_RS02925 PF03937 Flavinator of succinate dehydrogenase BQ_RS02930 PF03461 TRCF domain BQ_RS02930 PF00270 DEAD/DEAH box helicase BQ_RS02930 PF02559 CarD-like/TRCF domain BQ_RS02930 PF17757 UvrB interaction domain BQ_RS02930 PF00271 Helicase conserved C-terminal domain BQ_RS02945 PF12111 Polyribonucleotide phosphorylase C terminal BQ_RS02945 PF10150 Ribonuclease E/G family BQ_RS02945 PF00575 S1 RNA binding domain BQ_RS02950 PF01520 N-acetylmuramoyl-L-alanine amidase BQ_RS02950 PF11741 AMIN domain BQ_RS02955 PF00905 Penicillin binding protein transpeptidase domain BQ_RS02955 PF17092 Penicillin-binding protein OB-like domain BQ_RS02955 PF00912 Transglycosylase BQ_RS02960 PF03462 PCRF domain BQ_RS02960 PF00472 RF-1 domain BQ_RS02965 PF00578 AhpC/TSA family BQ_RS02970 PF01479 S4 domain BQ_RS02970 PF00579 tRNA synthetases class I (W and Y) BQ_RS02975 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BQ_RS02980 PF00266 Aminotransferase class-V BQ_RS02985 PF01458 Uncharacterized protein family (UPF0051) BQ_RS02990 PF00005 ABC transporter BQ_RS02995 PF01458 Uncharacterized protein family (UPF0051) BQ_RS03000 PF00266 Aminotransferase class-V BQ_RS03005 PF01883 Iron-sulfur cluster assembly protein BQ_RS03020 PF01494 FAD binding domain BQ_RS03025 PF01066 CDP-alcohol phosphatidyltransferase BQ_RS03035 PF03099 Biotin/lipoate A/B protein ligase family BQ_RS03035 PF12706 Beta-lactamase superfamily domain BQ_RS03040 PF01026 TatD related DNase BQ_RS03045 PF09334 tRNA synthetases class I (M) BQ_RS03050 PF09115 DNA polymerase III, delta subunit, C terminal BQ_RS03055 PF02223 Thymidylate kinase BQ_RS03060 PF00768 D-alanyl-D-alanine carboxypeptidase BQ_RS03060 PF07943 Penicillin-binding protein 5, C-terminal domain BQ_RS03065 PF03330 Lytic transglycolase BQ_RS03065 PF05036 Sporulation related domain BQ_RS03075 PF01726 LexA DNA binding domain BQ_RS03075 PF00717 Peptidase S24-like BQ_RS03090 PF00163 Ribosomal protein S4/S9 N-terminal domain BQ_RS03090 PF01479 S4 domain BQ_RS03095 PF01177 Asp/Glu/Hydantoin racemase BQ_RS03100 PF00588 SpoU rRNA Methylase family BQ_RS03105 PF03749 Sugar fermentation stimulation protein RE domain BQ_RS03105 PF17746 SfsA N-terminal OB domain BQ_RS03110 PF00557 Metallopeptidase family M24 BQ_RS03115 PF04002 RadC-like JAB domain BQ_RS03125 PF00561 alpha/beta hydrolase fold BQ_RS03135 PF00313 'Cold-shock' DNA-binding domain BQ_RS03145 PF02653 Branched-chain amino acid transport system / permease component BQ_RS03150 PF11862 Domain of unknown function (DUF3382) BQ_RS03150 PF02653 Branched-chain amino acid transport system / permease component BQ_RS03155 PF12399 Branched-chain amino acid ATP-binding cassette transporter BQ_RS03155 PF00005 ABC transporter BQ_RS03160 PF00005 ABC transporter BQ_RS03165 PF01425 Amidase BQ_RS03170 PF02686 Glu-tRNAGln amidotransferase C subunit BQ_RS03175 PF03652 Holliday junction resolvase BQ_RS03185 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BQ_RS03185 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BQ_RS03190 PF01979 Amidohydrolase family BQ_RS03195 PF02660 Glycerol-3-phosphate acyltransferase BQ_RS03200 PF02481 DNA recombination-mediator protein A BQ_RS03200 PF17782 DprA winged helix domain BQ_RS03205 PF13368 Topoisomerase C-terminal repeat BQ_RS03205 PF01751 Toprim domain BQ_RS03205 PF01396 Topoisomerase DNA binding C4 zinc finger BQ_RS03205 PF01131 DNA topoisomerase BQ_RS03210 PF17876 Cold shock domain BQ_RS03210 PF08461 Ribonuclease R winged-helix domain BQ_RS03210 PF08206 Ribonuclease B OB domain BQ_RS03210 PF00773 RNB domain BQ_RS03210 PF00575 S1 RNA binding domain BQ_RS03215 PF00471 Ribosomal protein L33 BQ_RS03225 PF03167 Uracil DNA glycosylase superfamily BQ_RS03230 PF01037 Lrp/AsnC ligand binding domain BQ_RS03240 PF01207 Dihydrouridine synthase (Dus) BQ_RS03250 PF00364 Biotin-requiring enzyme BQ_RS03255 PF02785 Biotin carboxylase C-terminal domain BQ_RS03255 PF00289 Biotin carboxylase, N-terminal domain BQ_RS03255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BQ_RS03285 PF03099 Biotin/lipoate A/B protein ligase family BQ_RS03290 PF01751 Toprim domain BQ_RS03290 PF00986 DNA gyrase B subunit, carboxyl terminus BQ_RS03290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS03290 PF00204 DNA gyrase B BQ_RS03295 PF17768 RecJ OB domain BQ_RS03295 PF01368 DHH family BQ_RS03295 PF02272 DHHA1 domain BQ_RS03300 PF00572 Ribosomal protein L13 BQ_RS03305 PF00380 Ribosomal protein S9/S16 BQ_RS03310 PF00072 Response regulator receiver domain BQ_RS03330 PF00324 Amino acid permease BQ_RS03340 PF00221 Aromatic amino acid lyase BQ_RS03350 PF01513 ATP-NAD kinase BQ_RS03355 PF00271 Helicase conserved C-terminal domain BQ_RS03355 PF00270 DEAD/DEAH box helicase BQ_RS03360 PF00749 tRNA synthetases class I (E and Q), catalytic domain BQ_RS03365 PF00795 Carbon-nitrogen hydrolase BQ_RS03365 PF02540 NAD synthase BQ_RS03370 PF01474 Class-II DAHP synthetase family BQ_RS03375 PF07992 Pyridine nucleotide-disulphide oxidoreductase BQ_RS03375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BQ_RS03385 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BQ_RS03395 PF00749 tRNA synthetases class I (E and Q), catalytic domain BQ_RS03400 PF00285 Citrate synthase, C-terminal domain BQ_RS03405 PF00497 Bacterial extracellular solute-binding proteins, family 3 BQ_RS03410 PF00528 Binding-protein-dependent transport system inner membrane component BQ_RS03415 PF00528 Binding-protein-dependent transport system inner membrane component BQ_RS03420 PF00005 ABC transporter BQ_RS03425 PF02684 Lipid-A-disaccharide synthetase BQ_RS03435 PF00132 Bacterial transferase hexapeptide (six repeats) BQ_RS03435 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BQ_RS03440 PF07977 FabA-like domain BQ_RS03445 PF00132 Bacterial transferase hexapeptide (six repeats) BQ_RS03445 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BQ_RS03450 PF01103 Surface antigen BQ_RS03450 PF07244 Surface antigen variable number repeat BQ_RS03455 PF17820 PDZ domain BQ_RS03455 PF02163 Peptidase family M50 BQ_RS03465 PF01765 Ribosome recycling factor BQ_RS03470 PF00696 Amino acid kinase family BQ_RS03475 PF00889 Elongation factor TS BQ_RS03480 PF00318 Ribosomal protein S2 BQ_RS03495 PF01230 HIT domain BQ_RS03500 PF17871 AAA lid domain BQ_RS03500 PF10431 C-terminal, D2-small domain, of ClpB protein BQ_RS03500 PF00004 ATPase family associated with various cellular activities (AAA) BQ_RS03500 PF07724 AAA domain (Cdc48 subfamily) BQ_RS03500 PF02861 Clp amino terminal domain, pathogenicity island component BQ_RS03505 PF02617 ATP-dependent Clp protease adaptor protein ClpS BQ_RS03510 PF00768 D-alanyl-D-alanine carboxypeptidase BQ_RS03510 PF07943 Penicillin-binding protein 5, C-terminal domain BQ_RS03520 PF03315 Serine dehydratase beta chain BQ_RS03520 PF03313 Serine dehydratase alpha chain BQ_RS03525 PF00881 Nitroreductase family BQ_RS03530 PF00623 RNA polymerase Rpb1, domain 2 BQ_RS03530 PF04998 RNA polymerase Rpb1, domain 5 BQ_RS03530 PF05000 RNA polymerase Rpb1, domain 4 BQ_RS03530 PF04983 RNA polymerase Rpb1, domain 3 BQ_RS03530 PF04997 RNA polymerase Rpb1, domain 1 BQ_RS03535 PF04560 RNA polymerase Rpb2, domain 7 BQ_RS03535 PF00562 RNA polymerase Rpb2, domain 6 BQ_RS03535 PF04565 RNA polymerase Rpb2, domain 3 BQ_RS03535 PF10385 RNA polymerase beta subunit external 1 domain BQ_RS03535 PF04561 RNA polymerase Rpb2, domain 2 BQ_RS03535 PF04563 RNA polymerase beta subunit BQ_RS03540 PF00542 Ribosomal protein L7/L12 C-terminal domain BQ_RS03540 PF16320 Ribosomal protein L7/L12 dimerisation domain BQ_RS03545 PF00466 Ribosomal protein L10 BQ_RS03550 PF00687 Ribosomal protein L1p/L10e family BQ_RS03555 PF03946 Ribosomal protein L11, N-terminal domain BQ_RS03555 PF00298 Ribosomal protein L11, RNA binding domain BQ_RS03560 PF02357 Transcription termination factor nusG BQ_RS03560 PF00467 KOW motif BQ_RS03565 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BQ_RS03575 PF03143 Elongation factor Tu C-terminal domain BQ_RS03575 PF03144 Elongation factor Tu domain 2 BQ_RS03575 PF00009 Elongation factor Tu GTP binding domain BQ_RS03590 PF08032 RNA 2'-O ribose methyltransferase substrate binding BQ_RS03590 PF00588 SpoU rRNA Methylase family BQ_RS03600 PF09923 Uncharacterized protein conserved in bacteria (DUF2155) BQ_RS03610 PF02637 GatB domain BQ_RS03610 PF02934 GatB/GatE catalytic domain BQ_RS03615 PF05697 Bacterial trigger factor protein (TF) BQ_RS03615 PF05698 Bacterial trigger factor protein (TF) C-terminus BQ_RS03615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BQ_RS03650 PF01594 AI-2E family transporter BQ_RS03655 PF02769 AIR synthase related protein, C-terminal domain BQ_RS03655 PF00586 AIR synthase related protein, N-terminal domain BQ_RS03660 PF00551 Formyl transferase BQ_RS03665 PF00072 Response regulator receiver domain BQ_RS03665 PF13188 PAS domain BQ_RS03665 PF08448 PAS fold BQ_RS03665 PF00512 His Kinase A (phospho-acceptor) domain BQ_RS03665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BQ_RS03675 PF01258 Prokaryotic dksA/traR C4-type zinc finger BQ_RS03680 PF01613 Flavin reductase like domain BQ_RS03685 PF00834 Ribulose-phosphate 3 epimerase family BQ_RS03690 PF00206 Lyase BQ_RS03690 PF10397 Adenylosuccinate lyase C-terminus BQ_RS03700 PF01259 SAICAR synthetase BQ_RS03705 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BQ_RS03715 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BQ_RS03715 PF00586 AIR synthase related protein, N-terminal domain BQ_RS03715 PF02769 AIR synthase related protein, C-terminal domain BQ_RS03725 PF00462 Glutaredoxin BQ_RS03730 PF07690 Major Facilitator Superfamily BQ_RS03735 PF03989 DNA gyrase C-terminal domain, beta-propeller BQ_RS03735 PF00521 DNA gyrase/topoisomerase IV, subunit A BQ_RS03740 PF01336 OB-fold nucleic acid binding domain BQ_RS03740 PF00152 tRNA synthetases class II (D, K and N) BQ_RS03740 PF02938 GAD domain BQ_RS03745 PF00570 HRDC domain BQ_RS03745 PF01612 3'-5' exonuclease BQ_RS03750 PF02541 Ppx/GppA phosphatase family BQ_RS03755 PF02503 Polyphosphate kinase middle domain BQ_RS03755 PF13090 Polyphosphate kinase C-terminal domain 2 BQ_RS03755 PF17941 Polyphosphate kinase C-terminal domain 1 BQ_RS03755 PF13089 Polyphosphate kinase N-terminal domain BQ_RS03765 PF01494 FAD binding domain BQ_RS03770 PF02811 PHP domain BQ_RS03770 PF14579 Helix-hairpin-helix motif BQ_RS03770 PF07733 Bacterial DNA polymerase III alpha NTPase domain BQ_RS03770 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BQ_RS03775 PF00270 DEAD/DEAH box helicase BQ_RS03775 PF00271 Helicase conserved C-terminal domain BQ_RS03775 PF17191 RecG wedge domain BQ_RS03780 PF01380 SIS domain BQ_RS03785 PF12804 MobA-like NTP transferase domain BQ_RS03785 PF00132 Bacterial transferase hexapeptide (six repeats) BQ_RS03785 PF14602 Hexapeptide repeat of succinyl-transferase BQ_RS03790 PF02683 Cytochrome C biogenesis protein transmembrane region BQ_RS03800 PF01521 Iron-sulphur cluster biosynthesis BQ_RS03805 PF01966 HD domain BQ_RS03805 PF13286 Phosphohydrolase-associated domain BQ_RS03810 PF03485 Arginyl tRNA synthetase N terminal domain BQ_RS03810 PF00750 tRNA synthetases class I (R) BQ_RS03810 PF05746 DALR anticodon binding domain BQ_RS03825 PF01063 Amino-transferase class IV BQ_RS03830 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BQ_RS03850 PF00180 Isocitrate/isopropylmalate dehydrogenase BQ_RS03855 PF07690 Major Facilitator Superfamily BQ_RS03875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BQ_RS03880 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BQ_RS03885 PF01467 Cytidylyltransferase-like BQ_RS03890 PF00521 DNA gyrase/topoisomerase IV, subunit A BQ_RS03890 PF03989 DNA gyrase C-terminal domain, beta-propeller BQ_RS03895 PF00436 Single-strand binding protein family BQ_RS03900 PF17760 UvrA interaction domain BQ_RS03900 PF17755 UvrA DNA-binding domain BQ_RS03905 PF00543 Nitrogen regulatory protein P-II BQ_RS03910 PF03951 Glutamine synthetase, beta-Grasp domain BQ_RS03910 PF00120 Glutamine synthetase, catalytic domain BQ_RS03925 PF01479 S4 domain BQ_RS03925 PF00849 RNA pseudouridylate synthase BQ_RS03930 PF00005 ABC transporter BQ_RS03930 PF00664 ABC transporter transmembrane region BQ_RS03935 PF02272 DHHA1 domain BQ_RS03935 PF01411 tRNA synthetases class II (A) BQ_RS03935 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BQ_RS03940 PF00154 recA bacterial DNA recombination protein BQ_RS03945 PF00004 ATPase family associated with various cellular activities (AAA) BQ_RS03945 PF16193 AAA C-terminal domain BQ_RS03945 PF12002 MgsA AAA+ ATPase C terminal BQ_RS03950 PF17820 PDZ domain BQ_RS03950 PF13180 PDZ domain BQ_RS03955 PF01196 Ribosomal protein L17 BQ_RS03960 PF01000 RNA polymerase Rpb3/RpoA insert domain BQ_RS03960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BQ_RS03960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BQ_RS03965 PF00411 Ribosomal protein S11 BQ_RS03970 PF00416 Ribosomal protein S13/S18 BQ_RS03980 PF00344 SecY translocase BQ_RS03985 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BQ_RS03990 PF00327 Ribosomal protein L30p/L7e BQ_RS03995 PF03719 Ribosomal protein S5, C-terminal domain BQ_RS03995 PF00333 Ribosomal protein S5, N-terminal domain BQ_RS04000 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BQ_RS04005 PF00347 Ribosomal protein L6 BQ_RS04010 PF00410 Ribosomal protein S8 BQ_RS04015 PF00253 Ribosomal protein S14p/S29e BQ_RS04020 PF00673 ribosomal L5P family C-terminus BQ_RS04020 PF00281 Ribosomal protein L5 BQ_RS04025 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BQ_RS04025 PF00467 KOW motif BQ_RS04030 PF00238 Ribosomal protein L14p/L23e BQ_RS04035 PF00366 Ribosomal protein S17 BQ_RS04040 PF00831 Ribosomal L29 protein BQ_RS04045 PF00252 Ribosomal protein L16p/L10e BQ_RS04050 PF00189 Ribosomal protein S3, C-terminal domain BQ_RS04050 PF07650 KH domain BQ_RS04055 PF00237 Ribosomal protein L22p/L17e BQ_RS04060 PF00203 Ribosomal protein S19 BQ_RS04065 PF00181 Ribosomal Proteins L2, RNA binding domain BQ_RS04065 PF03947 Ribosomal Proteins L2, C-terminal domain BQ_RS04070 PF00276 Ribosomal protein L23 BQ_RS04075 PF00573 Ribosomal protein L4/L1 family BQ_RS04080 PF00297 Ribosomal protein L3 BQ_RS04085 PF00338 Ribosomal protein S10p/S20e BQ_RS04090 PF03144 Elongation factor Tu domain 2 BQ_RS04090 PF03143 Elongation factor Tu C-terminal domain BQ_RS04090 PF00009 Elongation factor Tu GTP binding domain BQ_RS04095 PF00009 Elongation factor Tu GTP binding domain BQ_RS04095 PF03764 Elongation factor G, domain IV BQ_RS04095 PF14492 Elongation Factor G, domain II BQ_RS04095 PF00679 Elongation factor G C-terminus BQ_RS04095 PF03144 Elongation factor Tu domain 2 BQ_RS04100 PF00177 Ribosomal protein S7p/S5e BQ_RS04105 PF00164 Ribosomal protein S12/S23 BQ_RS04115 PF00497 Bacterial extracellular solute-binding proteins, family 3 BQ_RS04120 PF00528 Binding-protein-dependent transport system inner membrane component BQ_RS04125 PF00528 Binding-protein-dependent transport system inner membrane component BQ_RS04130 PF00005 ABC transporter BQ_RS04140 PF10458 Valyl tRNA synthetase tRNA binding arm BQ_RS04140 PF00133 tRNA synthetases class I (I, L, M and V) BQ_RS04140 PF08264 Anticodon-binding domain of tRNA BQ_RS04150 PF02321 Outer membrane efflux protein BQ_RS04180 PF13505 Outer membrane protein beta-barrel domain BQ_RS04190 PF00924 Mechanosensitive ion channel BQ_RS04190 PF12794 Mechanosensitive ion channel inner membrane domain 1 BQ_RS04190 PF12795 Mechanosensitive ion channel porin domain BQ_RS04200 PF02355 Protein export membrane protein BQ_RS04205 PF02254 TrkA-N domain BQ_RS04205 PF00999 Sodium/hydrogen exchanger family BQ_RS04215 PF03471 Transporter associated domain BQ_RS04215 PF03741 Integral membrane protein TerC family BQ_RS04235 PF00324 Amino acid permease BQ_RS04240 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BQ_RS04240 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BQ_RS04250 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BQ_RS04255 PF14490 Helix-hairpin-helix containing domain BQ_RS04255 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BQ_RS04255 PF13538 UvrD-like helicase C-terminal domain BQ_RS04270 PF13180 PDZ domain BQ_RS04275 PF01145 SPFH domain / Band 7 family BQ_RS04285 PF00186 Dihydrofolate reductase BQ_RS04290 PF00303 Thymidylate synthase BQ_RS04295 PF00083 Sugar (and other) transporter BQ_RS04325 PF13361 UvrD-like helicase C-terminal domain BQ_RS04325 PF00580 UvrD/REP helicase N-terminal domain BQ_RS04330 PF02630 SCO1/SenC BQ_RS04340 PF00557 Metallopeptidase family M24 BQ_RS04340 PF01321 Creatinase/Prolidase N-terminal domain BQ_RS04345 PF03120 NAD-dependent DNA ligase OB-fold domain BQ_RS04345 PF00533 BRCA1 C Terminus (BRCT) domain BQ_RS04345 PF12826 Helix-hairpin-helix motif BQ_RS04345 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BQ_RS04345 PF01653 NAD-dependent DNA ligase adenylation domain BQ_RS04350 PF02463 RecF/RecN/SMC N terminal domain BQ_RS04355 PF13525 Outer membrane lipoprotein BQ_RS04360 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BQ_RS04365 PF12327 FtsZ family, C-terminal domain BQ_RS04365 PF00091 Tubulin/FtsZ family, GTPase domain BQ_RS04370 PF02491 SHS2 domain inserted in FTSA BQ_RS04375 PF03799 Cell division protein FtsQ BQ_RS04375 PF08478 POTRA domain, FtsQ-type BQ_RS04380 PF01820 D-ala D-ala ligase N-terminus BQ_RS04380 PF07478 D-ala D-ala ligase C-terminus BQ_RS04385 PF01565 FAD binding domain BQ_RS04385 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BQ_RS04390 PF01225 Mur ligase family, catalytic domain BQ_RS04390 PF02875 Mur ligase family, glutamate ligase domain BQ_RS04390 PF08245 Mur ligase middle domain BQ_RS04395 PF03033 Glycosyltransferase family 28 N-terminal domain BQ_RS04395 PF04101 Glycosyltransferase family 28 C-terminal domain BQ_RS04400 PF01098 Cell cycle protein BQ_RS04405 PF08245 Mur ligase middle domain BQ_RS04410 PF00953 Glycosyl transferase family 4 BQ_RS04410 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BQ_RS04415 PF01225 Mur ligase family, catalytic domain BQ_RS04415 PF08245 Mur ligase middle domain BQ_RS04415 PF02875 Mur ligase family, glutamate ligase domain BQ_RS04420 PF02875 Mur ligase family, glutamate ligase domain BQ_RS04420 PF08245 Mur ligase middle domain BQ_RS04420 PF01225 Mur ligase family, catalytic domain BQ_RS04425 PF00905 Penicillin binding protein transpeptidase domain BQ_RS04425 PF03717 Penicillin-binding Protein dimerisation domain BQ_RS04435 PF01795 MraW methylase family BQ_RS04460 PF12848 ABC transporter BQ_RS04460 PF00005 ABC transporter BQ_RS04470 PF00857 Isochorismatase family BQ_RS04510 PF04402 Protein of unknown function (DUF541) BQ_RS04520 PF04546 Sigma-70, non-essential region BQ_RS04520 PF03979 Sigma-70 factor, region 1.1 BQ_RS04520 PF00140 Sigma-70 factor, region 1.2 BQ_RS04520 PF04539 Sigma-70 region 3 BQ_RS04520 PF04545 Sigma-70, region 4 BQ_RS04520 PF04542 Sigma-70 region 2 BQ_RS04530 PF08278 DNA primase DnaG DnaB-binding BQ_RS04530 PF01807 CHC2 zinc finger BQ_RS04530 PF13662 Toprim domain BQ_RS04530 PF08275 DNA primase catalytic core, N-terminal domain BQ_RS04530 PF10410 DnaB-helicase binding domain of primase BQ_RS04535 PF00924 Mechanosensitive ion channel BQ_RS04550 PF04345 Chorismate lyase BQ_RS04555 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BQ_RS04555 PF00117 Glutamine amidotransferase class-I BQ_RS04560 PF07690 Major Facilitator Superfamily BQ_RS04565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BQ_RS04565 PF02142 MGS-like domain BQ_RS04565 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BQ_RS04570 PF00313 'Cold-shock' DNA-binding domain BQ_RS04575 PF00155 Aminotransferase class I and II BQ_RS04580 PF03466 LysR substrate binding domain BQ_RS04580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BQ_RS04585 PF07992 Pyridine nucleotide-disulphide oxidoreductase BQ_RS04590 PF02386 Cation transport protein BQ_RS04595 PF00534 Glycosyl transferases group 1 BQ_RS04600 PF01272 Transcription elongation factor, GreA/GreB, C-term BQ_RS04600 PF03449 Transcription elongation factor, N-terminal BQ_RS04610 PF12344 Ultra-violet resistance protein B BQ_RS04610 PF17757 UvrB interaction domain BQ_RS04610 PF04851 Type III restriction enzyme, res subunit BQ_RS04610 PF00271 Helicase conserved C-terminal domain BQ_RS04610 PF02151 UvrB/uvrC motif BQ_RS04625 PF00588 SpoU rRNA Methylase family BQ_RS04630 PF13735 tRNA nucleotidyltransferase domain 2 putative BQ_RS04630 PF01743 Poly A polymerase head domain BQ_RS04630 PF12627 Probable RNA and SrmB- binding site of polymerase A BQ_RS04635 PF07726 ATPase family associated with various cellular activities (AAA) BQ_RS04635 PF17863 AAA lid domain BQ_RS04660 PF01545 Cation efflux family BQ_RS04660 PF16916 Dimerisation domain of Zinc Transporter BQ_RS04685 PF00072 Response regulator receiver domain BQ_RS04685 PF00486 Transcriptional regulatory protein, C terminal BQ_RS04690 PF10090 Histidine phosphotransferase C-terminal domain BQ_RS04705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BQ_RS04710 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BQ_RS04710 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BQ_RS04720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BQ_RS04720 PF00005 ABC transporter BQ_RS04725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BQ_RS04725 PF00005 ABC transporter BQ_RS04730 PF12911 N-terminal TM domain of oligopeptide transport permease C BQ_RS04730 PF00528 Binding-protein-dependent transport system inner membrane component BQ_RS04735 PF00528 Binding-protein-dependent transport system inner membrane component BQ_RS04740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BQ_RS04745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BQ_RS04750 PF13673 Acetyltransferase (GNAT) domain BQ_RS04750 PF00958 GMP synthase C terminal domain BQ_RS04750 PF00117 Glutamine amidotransferase class-I BQ_RS04750 PF13302 Acetyltransferase (GNAT) domain BQ_RS04750 PF03352 Methyladenine glycosylase BQ_RS04755 PF02601 Exonuclease VII, large subunit BQ_RS04755 PF13742 OB-fold nucleic acid binding domain BQ_RS04765 PF01925 Sulfite exporter TauE/SafE BQ_RS04775 PF01012 Electron transfer flavoprotein domain BQ_RS04780 PF01012 Electron transfer flavoprotein domain BQ_RS04780 PF00766 Electron transfer flavoprotein FAD-binding domain BQ_RS04800 PF02021 Uncharacterised protein family UPF0102 BQ_RS04805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BQ_RS04815 PF01883 Iron-sulfur cluster assembly protein BQ_RS04815 PF10609 NUBPL iron-transfer P-loop NTPase BQ_RS04820 PF00468 Ribosomal protein L34 BQ_RS04825 PF00825 Ribonuclease P BQ_RS04830 PF14849 YidC periplasmic domain BQ_RS04830 PF02096 60Kd inner membrane protein BQ_RS04835 PF01926 50S ribosome-binding GTPase BQ_RS04840 PF13417 Glutathione S-transferase, N-terminal domain BQ_RS04840 PF00043 Glutathione S-transferase, C-terminal domain BQ_RS04845 PF01113 Dihydrodipicolinate reductase, N-terminus BQ_RS04845 PF05173 Dihydrodipicolinate reductase, C-terminus BQ_RS04850 PF00300 Histidine phosphatase superfamily (branch 1) BQ_RS04880 PF02530 Porin subfamily BQ_RS04885 PF01510 N-acetylmuramoyl-L-alanine amidase BQ_RS04895 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BQ_RS04940 PF01475 Ferric uptake regulator family BQ_RS04945 PF13533 Biotin-lipoyl like BQ_RS04950 PF07690 Major Facilitator Superfamily BQ_RS04960 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BQ_RS04960 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BQ_RS04970 PF00581 Rhodanese-like domain BQ_RS04970 PF17773 UPF0176 acylphosphatase like domain BQ_RS04980 PF00970 Oxidoreductase FAD-binding domain BQ_RS04980 PF00175 Oxidoreductase NAD-binding domain BQ_RS04985 PF00842 Alanine racemase, C-terminal domain BQ_RS04985 PF01168 Alanine racemase, N-terminal domain BQ_RS04995 PF02347 Glycine cleavage system P-protein BQ_RS05000 PF01597 Glycine cleavage H-protein BQ_RS05005 PF08669 Glycine cleavage T-protein C-terminal barrel domain BQ_RS05005 PF01571 Aminomethyltransferase folate-binding domain BQ_RS05015 PF03966 Trm112p-like protein BQ_RS05025 PF01118 Semialdehyde dehydrogenase, NAD binding domain BQ_RS05025 PF02774 Semialdehyde dehydrogenase, dimerisation domain BQ_RS05050 PF01575 MaoC like domain BQ_RS05085 PF03797 Autotransporter beta-domain BQ_RS05095 PF01497 Periplasmic binding protein BQ_RS05100 PF01032 FecCD transport family BQ_RS05105 PF01032 FecCD transport family BQ_RS05110 PF00005 ABC transporter BQ_RS05180 PF01687 Riboflavin kinase BQ_RS05180 PF06574 FAD synthetase BQ_RS05210 PF04956 TrbC/VIRB2 family BQ_RS05215 PF05101 Type IV secretory pathway, VirB3-like protein BQ_RS05220 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BQ_RS05230 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BQ_RS05240 PF04335 VirB8 protein BQ_RS05245 PF03524 Conjugal transfer protein BQ_RS05250 PF03743 Bacterial conjugation TrbI-like protein BQ_RS05255 PF00437 Type II/IV secretion system protein BQ_RS05270 PF02534 Type IV secretory system Conjugative DNA transfer BQ_RS05280 PF02661 Fic/DOC family BQ_RS05280 PF18543 Intracellular delivery domain BQ_RS05305 PF03023 Lipid II flippase MurJ BQ_RS05310 PF00579 tRNA synthetases class I (W and Y) BQ_RS05320 PF01106 NifU-like domain BQ_RS05325 PF01106 NifU-like domain BQ_RS05330 PF00118 TCP-1/cpn60 chaperonin family BQ_RS05335 PF00166 Chaperonin 10 Kd subunit BQ_RS05340 PF00206 Lyase BQ_RS05340 PF10415 Fumarase C C-terminus BQ_RS05345 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BQ_RS05345 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BQ_RS05345 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BQ_RS05345 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BQ_RS05350 PF08534 Redoxin BQ_RS05355 PF08534 Redoxin BQ_RS05360 PF13393 Histidyl-tRNA synthetase BQ_RS05360 PF03129 Anticodon binding domain BQ_RS05370 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BQ_RS05415 PF01551 Peptidase family M23 BQ_RS05425 PF13426 PAS domain BQ_RS05425 PF13581 Histidine kinase-like ATPase domain BQ_RS05425 PF07568 Histidine kinase BQ_RS05445 PF00072 Response regulator receiver domain BQ_RS05450 PF13426 PAS domain BQ_RS05450 PF08447 PAS fold BQ_RS05450 PF07536 HWE histidine kinase BQ_RS05560 PF02861 Clp amino terminal domain, pathogenicity island component BQ_RS05560 PF07724 AAA domain (Cdc48 subfamily) BQ_RS05560 PF00004 ATPase family associated with various cellular activities (AAA) BQ_RS05560 PF10431 C-terminal, D2-small domain, of ClpB protein BQ_RS05560 PF17871 AAA lid domain BQ_RS05565 PF03884 DNA gyrase inhibitor YacG BQ_RS05570 PF02545 Maf-like protein BQ_RS05575 PF01176 Translation initiation factor 1A / IF-1 BQ_RS05580 PF02600 Disulfide bond formation protein DsbB BQ_RS05590 PF02600 Disulfide bond formation protein DsbB BQ_RS05605 PF00731 AIR carboxylase BQ_RS05610 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BQ_RS05610 PF02222 ATP-grasp domain BQ_RS05615 PF00444 Ribosomal protein L36 BQ_RS05650 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BQ_RS05740 PF03421 YopJ Serine/Threonine acetyltransferase BQ_RS05780 PF09335 SNARE associated Golgi protein BQ_RS05800 PF00692 dUTPase BQ_RS05810 PF02472 Biopolymer transport protein ExbD/TolR BQ_RS05815 PF01618 MotA/TolQ/ExbB proton channel family BQ_RS05830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BQ_RS05830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BQ_RS05830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BQ_RS05830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BQ_RS05835 PF01434 Peptidase family M41 BQ_RS05835 PF06480 FtsH Extracellular BQ_RS05835 PF00004 ATPase family associated with various cellular activities (AAA) BQ_RS05835 PF17862 AAA+ lid domain BQ_RS05840 PF01171 PP-loop family BQ_RS05850 PF00691 OmpA family BQ_RS05860 PF01709 Transcriptional regulator BQ_RS05870 PF07676 WD40-like Beta Propeller Repeat BQ_RS05870 PF04052 TolB amino-terminal domain BQ_RS05880 PF02472 Biopolymer transport protein ExbD/TolR BQ_RS05885 PF01618 MotA/TolQ/ExbB proton channel family BQ_RS05890 PF03061 Thioesterase superfamily BQ_RS05895 PF05496 Holliday junction DNA helicase RuvB P-loop domain BQ_RS05895 PF17864 RuvB AAA lid domain BQ_RS05895 PF05491 RuvB C-terminal winged helix domain BQ_RS05900 PF01330 RuvA N terminal domain BQ_RS05900 PF07499 RuvA, C-terminal domain BQ_RS05905 PF02075 Crossover junction endodeoxyribonuclease RuvC BQ_RS05935 PF01132 Elongation factor P (EF-P) OB domain BQ_RS05935 PF09285 Elongation factor P, C-terminal BQ_RS05935 PF08207 Elongation factor P (EF-P) KOW-like domain BQ_RS05940 PF00459 Inositol monophosphatase family BQ_RS05945 PF00005 ABC transporter BQ_RS05945 PF00664 ABC transporter transmembrane region BQ_RS05955 PF01197 Ribosomal protein L31 BQ_RS05960 PF00274 Fructose-bisphosphate aldolase class-I BQ_RS05965 PF00162 Phosphoglycerate kinase BQ_RS05970 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BQ_RS05970 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BQ_RS05975 PF02779 Transketolase, pyrimidine binding domain BQ_RS05975 PF02780 Transketolase, C-terminal domain BQ_RS05975 PF00456 Transketolase, thiamine diphosphate binding domain BQ_RS05995 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) BQ_RS06000 PF00005 ABC transporter BQ_RS06000 PF16326 ABC transporter C-terminal domain BQ_RS06015 PF01435 Peptidase family M48 BQ_RS06025 PF00140 Sigma-70 factor, region 1.2 BQ_RS06025 PF04542 Sigma-70 region 2 BQ_RS06025 PF04545 Sigma-70, region 4 BQ_RS06035 PF00037 4Fe-4S binding domain BQ_RS06035 PF11953 Domain of unknown function (DUF3470) BQ_RS06045 PF01783 Ribosomal L32p protein family BQ_RS06050 PF00348 Polyprenyl synthetase BQ_RS06055 PF04551 GcpE protein BQ_RS06065 PF00529 HlyD membrane-fusion protein of T1SS BQ_RS06065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BQ_RS06075 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BQ_RS06080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BQ_RS06080 PF02874 ATP synthase alpha/beta family, beta-barrel domain BQ_RS06085 PF00231 ATP synthase BQ_RS06090 PF00306 ATP synthase alpha/beta chain, C terminal domain BQ_RS06090 PF02874 ATP synthase alpha/beta family, beta-barrel domain BQ_RS06090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BQ_RS06095 PF00213 ATP synthase delta (OSCP) subunit BQ_RS06105 PF00270 DEAD/DEAH box helicase BQ_RS06105 PF17764 3′ DNA-binding domain (3′BD) BQ_RS06105 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BQ_RS06105 PF18074 Primosomal protein N C-terminal domain BQ_RS06115 PF00923 Transaldolase/Fructose-6-phosphate aldolase BQ_RS06125 PF08264 Anticodon-binding domain of tRNA BQ_RS06125 PF00133 tRNA synthetases class I (I, L, M and V) BQ_RS06125 PF13603 Leucyl-tRNA synthetase, Domain 2 BQ_RS06130 PF01168 Alanine racemase, N-terminal domain BQ_RS06135 PF16177 Acetyl-coenzyme A synthetase N-terminus BQ_RS06135 PF00501 AMP-binding enzyme BQ_RS06135 PF13193 AMP-binding enzyme C-terminal domain BQ_RS06140 PF00005 ABC transporter BQ_RS06155 PF00005 ABC transporter BQ_RS06155 PF02687 FtsX-like permease family BQ_RS06155 PF12704 MacB-like periplasmic core domain BQ_RS06160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BQ_RS06165 PF02321 Outer membrane efflux protein BQ_RS06180 PF17854 FtsK alpha domain BQ_RS06180 PF01580 FtsK/SpoIIIE family BQ_RS06180 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BQ_RS06180 PF09397 Ftsk gamma domain BQ_RS06185 PF01494 FAD binding domain BQ_RS06250 PF05101 Type IV secretory pathway, VirB3-like protein BQ_RS06255 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BQ_RS06290 PF04335 VirB8 protein BQ_RS06295 PF03524 Conjugal transfer protein BQ_RS06300 PF03743 Bacterial conjugation TrbI-like protein BQ_RS06305 PF00437 Type II/IV secretion system protein BQ_RS06320 PF13237 4Fe-4S dicluster domain BQ_RS06320 PF13085 2Fe-2S iron-sulfur cluster binding domain BQ_RS06325 PF02910 Fumarate reductase flavoprotein C-term BQ_RS06325 PF00890 FAD binding domain BQ_RS06330 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BQ_RS06340 PF01245 Ribosomal protein L19 BQ_RS06345 PF01746 tRNA (Guanine-1)-methyltransferase BQ_RS06350 PF01782 RimM N-terminal domain BQ_RS06350 PF05239 PRC-barrel domain BQ_RS06360 PF00589 Phage integrase family BQ_RS06360 PF02899 Phage integrase, N-terminal SAM-like domain BQ_RS06365 PF01722 BolA-like protein BQ_RS06370 PF00226 DnaJ domain BQ_RS06375 PF07728 AAA domain (dynein-related subfamily) BQ_RS06375 PF12556 Cobaltochelatase CobS subunit N terminal BQ_RS06375 PF08406 CbbQ/NirQ/NorQ C-terminal BQ_RS06380 PF11775 Cobalamin biosynthesis protein CobT VWA domain BQ_RS06380 PF06213 Cobalamin biosynthesis protein CobT BQ_RS06385 PF00830 Ribosomal L28 family BQ_RS06395 PF01808 AICARFT/IMPCHase bienzyme BQ_RS06395 PF02142 MGS-like domain BQ_RS06405 PF01029 NusB family BQ_RS06405 PF01189 16S rRNA methyltransferase RsmB/F BQ_RS06410 PF01435 Peptidase family M48 BQ_RS06415 PF07896 Protein of unknown function (DUF1674) BQ_RS06420 PF00886 Ribosomal protein S16 BQ_RS06430 PF00448 SRP54-type protein, GTPase domain BQ_RS06430 PF02978 Signal peptide binding domain BQ_RS06430 PF02881 SRP54-type protein, helical bundle domain BQ_RS06440 PF05088 Bacterial NAD-glutamate dehydrogenase BQ_RS06450 PF00117 Glutamine amidotransferase class-I BQ_RS06465 PF00814 Glycoprotease family BQ_RS06485 PF00072 Response regulator receiver domain BQ_RS06485 PF00486 Transcriptional regulatory protein, C terminal BQ_RS06500 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BQ_RS06500 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BQ_RS06515 PF08534 Redoxin BQ_RS06530 PF02153 Prephenate dehydrogenase BQ_RS06565 PF08543 Phosphomethylpyrimidine kinase BQ_RS06580 PF00768 D-alanyl-D-alanine carboxypeptidase BQ_RS06580 PF07943 Penicillin-binding protein 5, C-terminal domain BQ_RS06590 PF03734 L,D-transpeptidase catalytic domain BQ_RS06595 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BQ_RS06600 PF00589 Phage integrase family BQ_RS06600 PF02899 Phage integrase, N-terminal SAM-like domain BQ_RS06610 PF01202 Shikimate kinase BQ_RS06615 PF01761 3-dehydroquinate synthase BQ_RS06625 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme BQ_RS06630 PF03334 Na+/H+ antiporter subunit BQ_RS06635 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BQ_RS06640 PF01899 Na+/H+ ion antiporter subunit BQ_RS06645 PF00361 Proton-conducting membrane transporter BQ_RS06650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BQ_RS06655 PF13244 Domain of unknown function (DUF4040) BQ_RS06655 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BQ_RS06655 PF00361 Proton-conducting membrane transporter BQ_RS06655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BQ_RS06665 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BQ_RS06670 PF03435 Saccharopine dehydrogenase NADP binding domain BQ_RS06670 PF16653 Saccharopine dehydrogenase C-terminal domain BQ_RS06675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BQ_RS06675 PF07992 Pyridine nucleotide-disulphide oxidoreductase BQ_RS06680 PF00364 Biotin-requiring enzyme BQ_RS06680 PF02817 e3 binding domain BQ_RS06680 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BQ_RS06685 PF16870 2-oxoglutarate dehydrogenase C-terminal BQ_RS06685 PF16078 2-oxoglutarate dehydrogenase N-terminus BQ_RS06685 PF02779 Transketolase, pyrimidine binding domain BQ_RS06685 PF00676 Dehydrogenase E1 component BQ_RS06690 PF00549 CoA-ligase BQ_RS06690 PF02629 CoA binding domain BQ_RS06695 PF08442 ATP-grasp domain BQ_RS06695 PF00549 CoA-ligase BQ_RS06700 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BQ_RS06700 PF00056 lactate/malate dehydrogenase, NAD binding domain BQ_RS06705 PF03969 AFG1-like ATPase BQ_RS06710 PF02974 Protease inhibitor Inh BQ_RS06715 PF01678 Diaminopimelate epimerase BQ_RS06720 PF00919 Uncharacterized protein family UPF0004 BQ_RS06720 PF04055 Radical SAM superfamily BQ_RS06725 PF02881 SRP54-type protein, helical bundle domain BQ_RS06725 PF00448 SRP54-type protein, GTPase domain BQ_RS06730 PF04279 Intracellular septation protein A BQ_RS06735 PF00753 Metallo-beta-lactamase superfamily BQ_RS06735 PF16123 Hydroxyacylglutathione hydrolase C-terminus BQ_RS06740 PF17762 HTH domain found in ParB protein BQ_RS06740 PF02195 ParB-like nuclease domain BQ_RS06745 PF13614 AAA domain BQ_RS06750 PF02527 rRNA small subunit methyltransferase G BQ_RS06755 PF01134 Glucose inhibited division protein A BQ_RS06755 PF13932 GidA associated domain BQ_RS06760 PF12631 MnmE helical domain BQ_RS06760 PF10396 GTP-binding protein TrmE N-terminus BQ_RS06760 PF01926 50S ribosome-binding GTPase BQ_RS06765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BQ_RS06765 PF07497 Rho termination factor, RNA-binding domain BQ_RS06765 PF07498 Rho termination factor, N-terminal domain