BQ_RS00025 SM00479 BQ_RS00025 BQ_RS00030 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BQ_RS00030 SM00474 3'-5' exonuclease BQ_RS00030 SM00475 5'-3' exonuclease BQ_RS00030 SM00482 DNA polymerase A domain BQ_RS00050 SM00967 RNA 2'-O ribose methyltransferase substrate binding BQ_RS00065 SM00411 bacterial (prokaryotic) histone like domain BQ_RS00080 SM00382 ATPases associated with a variety of cellular activities BQ_RS00145 SM00091 PAS domain BQ_RS00145 SM00387 Histidine kinase-like ATPases BQ_RS00145 SM00388 His Kinase A (phosphoacceptor) domain BQ_RS00150 SM00996 S-adenosyl-L-homocysteine hydrolase BQ_RS00150 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BQ_RS00190 SM00387 Histidine kinase-like ATPases BQ_RS00190 SM00433 TopoisomeraseII BQ_RS00200 SM00062 Bacterial periplasmic substrate-binding proteins BQ_RS00205 SM00382 ATPases associated with a variety of cellular activities BQ_RS00220 SM00382 ATPases associated with a variety of cellular activities BQ_RS00245 SM00729 Elongator protein 3, MiaB family, Radical SAM BQ_RS00285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BQ_RS00285 SM00387 Histidine kinase-like ATPases BQ_RS00285 SM00388 His Kinase A (phosphoacceptor) domain BQ_RS00290 SM00448 cheY-homologous receiver domain BQ_RS00290 SM00862 Transcriptional regulatory protein, C terminal BQ_RS00295 SM00257 Lysin motif BQ_RS00310 SM00271 DnaJ molecular chaperone homology domain BQ_RS00325 SM00838 Elongation factor G C-terminus BQ_RS00380 SM00478 endonuclease III BQ_RS00400 SM00873 B3/4 domain BQ_RS00400 SM00874 tRNA synthetase B5 domain BQ_RS00400 SM00896 Ferredoxin-fold anticodon binding domain BQ_RS00410 SM00382 ATPases associated with a variety of cellular activities BQ_RS00435 SM01068 Putative carbohydrate binding domain BQ_RS00440 SM00316 Ribosomal protein S1-like RNA-binding domain BQ_RS00475 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BQ_RS00475 SM00534 ATPase domain of DNA mismatch repair MUTS family BQ_RS00480 SM00919 Malic enzyme, NAD binding domain BQ_RS00480 SM01274 BQ_RS00480 BQ_RS00495 SM00978 BQ_RS00495 BQ_RS00545 SM00382 ATPases associated with a variety of cellular activities BQ_RS00560 SM00382 ATPases associated with a variety of cellular activities BQ_RS00560 SM00760 Bacterial dnaA protein helix-turn-helix domain BQ_RS00565 SM00480 DNA polymerase III beta subunit BQ_RS00610 SM00825 Beta-ketoacyl synthase BQ_RS00625 SM00287 Bacterial SH3 domain homologues BQ_RS00735 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BQ_RS00765 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BQ_RS00765 SM00245 tail specific protease BQ_RS00785 SM01152 BQ_RS00785 BQ_RS00795 SM00838 Elongation factor G C-terminus BQ_RS00805 SM00116 Domain in cystathionine beta-synthase and other proteins. BQ_RS00805 SM00924 MgtE intracellular N domain BQ_RS00830 SM00116 Domain in cystathionine beta-synthase and other proteins. BQ_RS00840 SM00448 cheY-homologous receiver domain BQ_RS00845 SM00155 Phospholipase D. Active site motifs. BQ_RS00850 SM00116 Domain in cystathionine beta-synthase and other proteins. BQ_RS00850 SM01240 BQ_RS00850 BQ_RS00870 SM00382 ATPases associated with a variety of cellular activities BQ_RS00900 SM00382 ATPases associated with a variety of cellular activities BQ_RS00930 SM00937 BQ_RS00930 BQ_RS00940 SM00957 SecA DEAD-like domain BQ_RS00940 SM00958 SecA preprotein cross-linking domain BQ_RS00975 SM00870 BQ_RS00975 BQ_RS00985 SM00382 ATPases associated with a variety of cellular activities BQ_RS00985 SM01086 C-terminal, D2-small domain, of ClpB protein BQ_RS00995 SM00316 Ribosomal protein S1-like RNA-binding domain BQ_RS00995 SM00322 K homology RNA-binding domain BQ_RS01000 SM01387 BQ_RS01000 BQ_RS01035 SM00316 Ribosomal protein S1-like RNA-binding domain BQ_RS01035 SM00322 K homology RNA-binding domain BQ_RS01055 SM00530 Helix-turn-helix XRE-family like proteins BQ_RS01065 SM01091 Transporter associated domain BQ_RS01080 SM00729 Elongator protein 3, MiaB family, Radical SAM BQ_RS01095 SM00493 BQ_RS01095 BQ_RS01105 SM00382 ATPases associated with a variety of cellular activities BQ_RS01170 SM00382 ATPases associated with a variety of cellular activities BQ_RS01190 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BQ_RS01190 SM01232 BQ_RS01190 BQ_RS01200 SM00474 3'-5' exonuclease BQ_RS01245 SM00363 S4 RNA-binding domain BQ_RS01290 SM00853 MutL C terminal dimerisation domain BQ_RS01290 SM01340 BQ_RS01290 BQ_RS01345 SM00382 ATPases associated with a variety of cellular activities BQ_RS01390 SM00788 Adenylosuccinate synthetase BQ_RS01405 SM00363 S4 RNA-binding domain BQ_RS01415 SM00382 ATPases associated with a variety of cellular activities BQ_RS01415 SM00843 BQ_RS01415 BQ_RS01425 SM00387 Histidine kinase-like ATPases BQ_RS01425 SM00388 His Kinase A (phosphoacceptor) domain BQ_RS01445 SM01230 BQ_RS01445 BQ_RS01590 SM00028 Tetratricopeptide repeats BQ_RS01665 SM01400 BQ_RS01665 BQ_RS01700 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BQ_RS01700 SM00387 Histidine kinase-like ATPases BQ_RS01700 SM00388 His Kinase A (phosphoacceptor) domain BQ_RS01705 SM00448 cheY-homologous receiver domain BQ_RS01705 SM00862 Transcriptional regulatory protein, C terminal BQ_RS01710 SM00849 Metallo-beta-lactamase superfamily BQ_RS01745 SM01209 BQ_RS01745 BQ_RS01745 SM01210 BQ_RS01745 BQ_RS01760 SM00271 DnaJ molecular chaperone homology domain BQ_RS01785 SM00861 Transketolase, pyrimidine binding domain BQ_RS01850 SM00052 Putative diguanylate phosphodiesterase BQ_RS01850 SM00267 diguanylate cyclase BQ_RS01895 SM00478 endonuclease III BQ_RS01895 SM00525 BQ_RS01895 BQ_RS01990 SM00448 cheY-homologous receiver domain BQ_RS01990 SM00862 Transcriptional regulatory protein, C terminal BQ_RS01995 SM00387 Histidine kinase-like ATPases BQ_RS02020 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BQ_RS02025 SM00448 cheY-homologous receiver domain BQ_RS02025 SM00862 Transcriptional regulatory protein, C terminal BQ_RS02030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BQ_RS02030 SM00387 Histidine kinase-like ATPases BQ_RS02030 SM00388 His Kinase A (phosphoacceptor) domain BQ_RS02050 SM00387 Histidine kinase-like ATPases BQ_RS02050 SM00388 His Kinase A (phosphoacceptor) domain BQ_RS02060 SM00986 Uracil DNA glycosylase superfamily BQ_RS02060 SM00987 UreE urease accessory protein, C-terminal domain BQ_RS02095 SM00382 ATPases associated with a variety of cellular activities BQ_RS02130 SM01130 BQ_RS02130 BQ_RS02140 SM00986 Uracil DNA glycosylase superfamily BQ_RS02140 SM00987 UreE urease accessory protein, C-terminal domain BQ_RS02145 SM01409 BQ_RS02145 BQ_RS02150 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BQ_RS02150 SM00954 Region found in RelA / SpoT proteins BQ_RS02175 SM00358 Double-stranded RNA binding motif BQ_RS02175 SM00535 Ribonuclease III family BQ_RS02220 SM00840 BQ_RS02220 BQ_RS02230 SM00382 ATPases associated with a variety of cellular activities BQ_RS02260 SM00382 ATPases associated with a variety of cellular activities BQ_RS02265 SM00382 ATPases associated with a variety of cellular activities BQ_RS02290 SM00014 Acid phosphatase homologues BQ_RS02295 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BQ_RS02300 SM00822 BQ_RS02300 BQ_RS02305 SM00823 Phosphopantetheine attachment site BQ_RS02310 SM00825 Beta-ketoacyl synthase BQ_RS02320 SM00072 Guanylate kinase homologues. BQ_RS02325 SM00650 Ribosomal RNA adenine dimethylases BQ_RS02370 SM00869 Autotransporter beta-domain BQ_RS02380 SM00562 BQ_RS02380 BQ_RS02390 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BQ_RS02390 SM00465 GIY-YIG type nucleases (URI domain) BQ_RS02430 SM00257 Lysin motif BQ_RS02435 SM01323 BQ_RS02435 BQ_RS02475 SM01192 BQ_RS02475 BQ_RS02475 SM01193 BQ_RS02475 BQ_RS02495 SM00861 Transketolase, pyrimidine binding domain BQ_RS02510 SM00729 Elongator protein 3, MiaB family, Radical SAM BQ_RS02535 SM00091 PAS domain BQ_RS02535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BQ_RS02535 SM00387 Histidine kinase-like ATPases BQ_RS02535 SM00388 His Kinase A (phosphoacceptor) domain BQ_RS02540 SM00382 ATPases associated with a variety of cellular activities BQ_RS02540 SM00448 cheY-homologous receiver domain BQ_RS02560 SM00382 ATPases associated with a variety of cellular activities BQ_RS02560 SM00994 ClpX C4-type zinc finger BQ_RS02560 SM01086 C-terminal, D2-small domain, of ClpB protein BQ_RS02565 SM00382 ATPases associated with a variety of cellular activities BQ_RS02565 SM00464 Found in ATP-dependent protease La (LON) BQ_RS02570 SM00411 bacterial (prokaryotic) histone like domain BQ_RS02615 SM00448 cheY-homologous receiver domain BQ_RS02650 SM00829 Enoylreductase BQ_RS02655 SM00825 Beta-ketoacyl synthase BQ_RS02670 SM00919 Malic enzyme, NAD binding domain BQ_RS02670 SM01274 BQ_RS02670 BQ_RS02705 SM00859 Semialdehyde dehydrogenase, NAD binding domain BQ_RS02760 SM00411 bacterial (prokaryotic) histone like domain BQ_RS02765 SM00422 helix_turn_helix, mercury resistance BQ_RS02770 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BQ_RS02775 SM01234 BQ_RS02775 BQ_RS02855 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BQ_RS02860 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BQ_RS02905 SM00849 Metallo-beta-lactamase superfamily BQ_RS02920 SM00382 ATPases associated with a variety of cellular activities BQ_RS02930 SM00487 DEAD-like helicases superfamily BQ_RS02930 SM00490 helicase superfamily c-terminal domain BQ_RS02930 SM00982 BQ_RS02930 BQ_RS02930 SM01058 CarD-like/TRCF domain BQ_RS02950 SM00646 BQ_RS02950 BQ_RS02960 SM00937 BQ_RS02960 BQ_RS02990 SM00382 ATPases associated with a variety of cellular activities BQ_RS03035 SM00849 Metallo-beta-lactamase superfamily BQ_RS03060 SM00936 Penicillin-binding protein 5, C-terminal domain BQ_RS03090 SM00363 S4 RNA-binding domain BQ_RS03090 SM01390 BQ_RS03090 BQ_RS03135 SM00357 Cold shock protein domain BQ_RS03155 SM00382 ATPases associated with a variety of cellular activities BQ_RS03160 SM00382 ATPases associated with a variety of cellular activities BQ_RS03175 SM00732 Likely ribonuclease with RNase H fold. BQ_RS03195 SM01207 BQ_RS03195 BQ_RS03205 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BQ_RS03205 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BQ_RS03205 SM00493 BQ_RS03205 BQ_RS03210 SM00316 Ribosomal protein S1-like RNA-binding domain BQ_RS03210 SM00955 BQ_RS03210 BQ_RS03220 SM00318 Staphylococcal nuclease homologues BQ_RS03225 SM00986 Uracil DNA glycosylase superfamily BQ_RS03225 SM00987 UreE urease accessory protein, C-terminal domain BQ_RS03230 SM00344 helix_turn_helix ASNC type BQ_RS03255 SM00878 Biotin carboxylase C-terminal domain BQ_RS03290 SM00387 Histidine kinase-like ATPases BQ_RS03290 SM00433 TopoisomeraseII BQ_RS03310 SM00448 cheY-homologous receiver domain BQ_RS03315 SM00869 Autotransporter beta-domain BQ_RS03355 SM00487 DEAD-like helicases superfamily BQ_RS03355 SM00490 helicase superfamily c-terminal domain BQ_RS03405 SM00062 Bacterial periplasmic substrate-binding proteins BQ_RS03420 SM00382 ATPases associated with a variety of cellular activities BQ_RS03500 SM00382 ATPases associated with a variety of cellular activities BQ_RS03500 SM01086 C-terminal, D2-small domain, of ClpB protein BQ_RS03530 SM00663 RNA polymerase I subunit A N-terminus BQ_RS03555 SM00649 Ribosomal protein L11/L12 BQ_RS03560 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BQ_RS03560 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BQ_RS03590 SM00967 RNA 2'-O ribose methyltransferase substrate binding BQ_RS03610 SM00845 GatB domain BQ_RS03665 SM00091 PAS domain BQ_RS03665 SM00387 Histidine kinase-like ATPases BQ_RS03665 SM00388 His Kinase A (phosphoacceptor) domain BQ_RS03665 SM00448 cheY-homologous receiver domain BQ_RS03680 SM00903 Flavin reductase like domain BQ_RS03690 SM00998 Adenylosuccinate lyase C-terminus BQ_RS03710 SM01211 BQ_RS03710 BQ_RS03735 SM00434 DNA Topoisomerase IV BQ_RS03745 SM00341 Helicase and RNase D C-terminal BQ_RS03745 SM00474 3'-5' exonuclease BQ_RS03770 SM00481 DNA polymerase alpha chain like domain BQ_RS03775 SM00487 DEAD-like helicases superfamily BQ_RS03775 SM00490 helicase superfamily c-terminal domain BQ_RS03805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BQ_RS03810 SM00836 DALR anticodon binding domain BQ_RS03810 SM01016 Arginyl tRNA synthetase N terminal dom BQ_RS03850 SM01329 BQ_RS03850 BQ_RS03890 SM00434 DNA Topoisomerase IV BQ_RS03905 SM00938 Nitrogen regulatory protein P-II BQ_RS03910 SM01230 BQ_RS03910 BQ_RS03930 SM00382 ATPases associated with a variety of cellular activities BQ_RS03935 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BQ_RS03940 SM00382 ATPases associated with a variety of cellular activities BQ_RS03945 SM00382 ATPases associated with a variety of cellular activities BQ_RS03950 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BQ_RS03960 SM00662 RNA polymerases D BQ_RS04025 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BQ_RS04030 SM01374 BQ_RS04030 BQ_RS04050 SM00322 K homology RNA-binding domain BQ_RS04065 SM01382 BQ_RS04065 BQ_RS04065 SM01383 BQ_RS04065 BQ_RS04085 SM01403 BQ_RS04085 BQ_RS04095 SM00838 Elongation factor G C-terminus BQ_RS04095 SM00889 Elongation factor G, domain IV BQ_RS04115 SM00062 Bacterial periplasmic substrate-binding proteins BQ_RS04130 SM00382 ATPases associated with a variety of cellular activities BQ_RS04215 SM01091 Transporter associated domain BQ_RS04270 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BQ_RS04275 SM00244 prohibitin homologues BQ_RS04280 SM00244 prohibitin homologues BQ_RS04345 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BQ_RS04345 SM00292 breast cancer carboxy-terminal domain BQ_RS04345 SM00532 Ligase N family BQ_RS04365 SM00864 Tubulin/FtsZ family, GTPase domain BQ_RS04365 SM00865 Tubulin/FtsZ family, C-terminal domain BQ_RS04370 SM00842 Cell division protein FtsA BQ_RS04460 SM00382 ATPases associated with a variety of cellular activities BQ_RS04480 SM00530 Helix-turn-helix XRE-family like proteins BQ_RS04530 SM00400 zinc finger BQ_RS04530 SM00493 BQ_RS04530 BQ_RS04555 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BQ_RS04565 SM00851 MGS-like domain BQ_RS04565 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BQ_RS04570 SM00357 Cold shock protein domain BQ_RS04605 SM00287 Bacterial SH3 domain homologues BQ_RS04610 SM00487 DEAD-like helicases superfamily BQ_RS04610 SM00490 helicase superfamily c-terminal domain BQ_RS04685 SM00448 cheY-homologous receiver domain BQ_RS04685 SM00862 Transcriptional regulatory protein, C terminal BQ_RS04720 SM00382 ATPases associated with a variety of cellular activities BQ_RS04725 SM00382 ATPases associated with a variety of cellular activities BQ_RS04775 SM00893 Electron transfer flavoprotein domain BQ_RS04780 SM00893 Electron transfer flavoprotein domain BQ_RS04850 SM00855 Phosphoglycerate mutase family BQ_RS04885 SM00644 BQ_RS04885 BQ_RS04895 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BQ_RS04970 SM00450 Rhodanese Homology Domain BQ_RS04985 SM01005 Alanine racemase, C-terminal domain BQ_RS05010 SM00464 Found in ATP-dependent protease La (LON) BQ_RS05025 SM00859 Semialdehyde dehydrogenase, NAD binding domain BQ_RS05030 SM00287 Bacterial SH3 domain homologues BQ_RS05085 SM00869 Autotransporter beta-domain BQ_RS05090 SM00869 Autotransporter beta-domain BQ_RS05110 SM00382 ATPases associated with a variety of cellular activities BQ_RS05130 SM00869 Autotransporter beta-domain BQ_RS05150 SM00869 Autotransporter beta-domain BQ_RS05180 SM00904 Riboflavin kinase BQ_RS05205 SM00318 Staphylococcal nuclease homologues BQ_RS05220 SM00382 ATPases associated with a variety of cellular activities BQ_RS05255 SM00382 ATPases associated with a variety of cellular activities BQ_RS05320 SM00932 Scaffold protein Nfu/NifU N terminal BQ_RS05335 SM00883 Chaperonin 10 Kd subunit BQ_RS05370 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BQ_RS05445 SM00448 cheY-homologous receiver domain BQ_RS05450 SM00911 HWE histidine kinase BQ_RS05560 SM00382 ATPases associated with a variety of cellular activities BQ_RS05560 SM01086 C-terminal, D2-small domain, of ClpB protein BQ_RS05605 SM01001 AIR carboxylase BQ_RS05620 SM00028 Tetratricopeptide repeats BQ_RS05700 SM00493 BQ_RS05700 BQ_RS05835 SM00382 ATPases associated with a variety of cellular activities BQ_RS05895 SM00382 ATPases associated with a variety of cellular activities BQ_RS05900 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BQ_RS05930 SM00671 Sel1-like repeats. BQ_RS05935 SM00841 Elongation factor P, C-terminal BQ_RS05935 SM01185 BQ_RS05935 BQ_RS05945 SM00382 ATPases associated with a variety of cellular activities BQ_RS05970 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BQ_RS05975 SM00861 Transketolase, pyrimidine binding domain BQ_RS06000 SM00382 ATPases associated with a variety of cellular activities BQ_RS06010 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BQ_RS06040 SM01058 CarD-like/TRCF domain BQ_RS06080 SM00382 ATPases associated with a variety of cellular activities BQ_RS06105 SM00487 DEAD-like helicases superfamily BQ_RS06105 SM00490 helicase superfamily c-terminal domain BQ_RS06140 SM00382 ATPases associated with a variety of cellular activities BQ_RS06155 SM00382 ATPases associated with a variety of cellular activities BQ_RS06180 SM00382 ATPases associated with a variety of cellular activities BQ_RS06180 SM00843 BQ_RS06180 BQ_RS06190 SM00528 Domain in histone-like proteins of HNS family BQ_RS06370 SM00271 DnaJ molecular chaperone homology domain BQ_RS06380 SM00327 von Willebrand factor (vWF) type A domain BQ_RS06395 SM00798 AICARFT/IMPCHase bienzyme BQ_RS06395 SM00851 MGS-like domain BQ_RS06425 SM00830 Chorismate mutase type II BQ_RS06430 SM00382 ATPases associated with a variety of cellular activities BQ_RS06430 SM00962 SRP54-type protein, GTPase domain BQ_RS06430 SM00963 SRP54-type protein, helical bundle domain BQ_RS06485 SM00448 cheY-homologous receiver domain BQ_RS06485 SM00862 Transcriptional regulatory protein, C terminal BQ_RS06570 SM00563 Phosphate acyltransferases BQ_RS06685 SM00861 Transketolase, pyrimidine binding domain BQ_RS06690 SM00881 CoA binding domain BQ_RS06720 SM00729 Elongator protein 3, MiaB family, Radical SAM BQ_RS06725 SM00382 ATPases associated with a variety of cellular activities BQ_RS06725 SM00962 SRP54-type protein, GTPase domain BQ_RS06725 SM00963 SRP54-type protein, helical bundle domain BQ_RS06735 SM00849 Metallo-beta-lactamase superfamily BQ_RS06740 SM00470 ParB-like nuclease domain BQ_RS06755 SM01228 BQ_RS06755 BQ_RS06765 SM00357 Cold shock protein domain BQ_RS06765 SM00382 ATPases associated with a variety of cellular activities BQ_RS06765 SM00959 Rho termination factor, N-terminal domain