locus-tag class description D1093_RS00010 PF02600 Disulfide bond formation protein DsbB D1093_RS00020 PF00731 AIR carboxylase D1093_RS00030 PF00118 TCP-1/cpn60 chaperonin family D1093_RS00035 PF00166 Chaperonin 10 Kd subunit D1093_RS00040 PF00206 Lyase D1093_RS00040 PF10415 Fumarase C C-terminus D1093_RS00050 PF13505 Outer membrane protein beta-barrel domain D1093_RS00080 PF09335 SNARE associated Golgi protein D1093_RS00115 PF00692 dUTPase D1093_RS00125 PF02472 Biopolymer transport protein ExbD/TolR D1093_RS00130 PF01618 MotA/TolQ/ExbB proton channel family D1093_RS00150 PF04956 TrbC/VIRB2 family D1093_RS00155 PF05101 Type IV secretory pathway, VirB3-like protein D1093_RS00160 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D1093_RS00210 PF17841 BID domain of Bartonella effector protein (Bep) D1093_RS00210 PF02661 Fic/DOC family D1093_RS00215 PF18495 Antitoxin VbhA D1093_RS00220 PF01381 Helix-turn-helix D1093_RS00230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1093_RS00230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1093_RS00230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1093_RS00230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1093_RS00235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1093_RS00235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1093_RS00235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1093_RS00235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1093_RS00240 PF00004 ATPase family associated with various cellular activities (AAA) D1093_RS00240 PF06480 FtsH Extracellular D1093_RS00240 PF01434 Peptidase family M41 D1093_RS00240 PF17862 AAA+ lid domain D1093_RS00245 PF01171 PP-loop family D1093_RS00255 PF00691 OmpA family D1093_RS00265 PF01709 Transcriptional regulator D1093_RS00270 PF04052 TolB amino-terminal domain D1093_RS00270 PF07676 WD40-like Beta Propeller Repeat D1093_RS00280 PF02472 Biopolymer transport protein ExbD/TolR D1093_RS00285 PF01618 MotA/TolQ/ExbB proton channel family D1093_RS00290 PF01381 Helix-turn-helix D1093_RS00295 PF01381 Helix-turn-helix D1093_RS00300 PF03061 Thioesterase superfamily D1093_RS00305 PF05496 Holliday junction DNA helicase RuvB P-loop domain D1093_RS00305 PF05491 RuvB C-terminal winged helix domain D1093_RS00305 PF17864 RuvB AAA lid domain D1093_RS00310 PF07499 RuvA, C-terminal domain D1093_RS00310 PF01330 RuvA N terminal domain D1093_RS00315 PF02075 Crossover junction endodeoxyribonuclease RuvC D1093_RS00345 PF01381 Helix-turn-helix D1093_RS00350 PF01381 Helix-turn-helix D1093_RS00375 PF01381 Helix-turn-helix D1093_RS00380 PF01381 Helix-turn-helix D1093_RS00385 PF01132 Elongation factor P (EF-P) OB domain D1093_RS00385 PF08207 Elongation factor P (EF-P) KOW-like domain D1093_RS00385 PF09285 Elongation factor P, C-terminal D1093_RS00390 PF00459 Inositol monophosphatase family D1093_RS00410 PF00005 ABC transporter D1093_RS00410 PF00664 ABC transporter transmembrane region D1093_RS00415 PF01197 Ribosomal protein L31 D1093_RS00430 PF00274 Fructose-bisphosphate aldolase class-I D1093_RS00435 PF00162 Phosphoglycerate kinase D1093_RS00440 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D1093_RS00440 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D1093_RS00445 PF00456 Transketolase, thiamine diphosphate binding domain D1093_RS00445 PF02779 Transketolase, pyrimidine binding domain D1093_RS00445 PF02780 Transketolase, C-terminal domain D1093_RS00475 PF02887 Pyruvate kinase, alpha/beta domain D1093_RS00475 PF00224 Pyruvate kinase, barrel domain D1093_RS00485 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) D1093_RS00490 PF13302 Acetyltransferase (GNAT) domain D1093_RS00495 PF00005 ABC transporter D1093_RS00495 PF16326 ABC transporter C-terminal domain D1093_RS00510 PF13181 Tetratricopeptide repeat D1093_RS00510 PF01435 Peptidase family M48 D1093_RS00515 PF04545 Sigma-70, region 4 D1093_RS00515 PF04542 Sigma-70 region 2 D1093_RS00515 PF00140 Sigma-70 factor, region 1.2 D1093_RS00525 PF00037 4Fe-4S binding domain D1093_RS00525 PF11953 Domain of unknown function (DUF3470) D1093_RS00535 PF01783 Ribosomal L32p protein family D1093_RS00540 PF00348 Polyprenyl synthetase D1093_RS00550 PF04551 GcpE protein D1093_RS00560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1093_RS00560 PF00529 HlyD membrane-fusion protein of T1SS D1093_RS00570 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D1093_RS00575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1093_RS00575 PF02874 ATP synthase alpha/beta family, beta-barrel domain D1093_RS00580 PF00231 ATP synthase D1093_RS00585 PF00306 ATP synthase alpha/beta chain, C terminal domain D1093_RS00585 PF02874 ATP synthase alpha/beta family, beta-barrel domain D1093_RS00585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1093_RS00590 PF00213 ATP synthase delta (OSCP) subunit D1093_RS00605 PF18074 Primosomal protein N C-terminal domain D1093_RS00605 PF17764 3′ DNA-binding domain (3′BD) D1093_RS00605 PF00270 DEAD/DEAH box helicase D1093_RS00605 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D1093_RS00610 PF00923 Transaldolase/Fructose-6-phosphate aldolase D1093_RS00620 PF13603 Leucyl-tRNA synthetase, Domain 2 D1093_RS00620 PF00133 tRNA synthetases class I (I, L, M and V) D1093_RS00620 PF08264 Anticodon-binding domain of tRNA D1093_RS00625 PF01168 Alanine racemase, N-terminal domain D1093_RS00655 PF16177 Acetyl-coenzyme A synthetase N-terminus D1093_RS00655 PF00501 AMP-binding enzyme D1093_RS00655 PF13193 AMP-binding enzyme C-terminal domain D1093_RS00660 PF00005 ABC transporter D1093_RS00675 PF04851 Type III restriction enzyme, res subunit D1093_RS00675 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D1093_RS00675 PF00271 Helicase conserved C-terminal domain D1093_RS00675 PF08463 EcoEI R protein C-terminal D1093_RS00685 PF12704 MacB-like periplasmic core domain D1093_RS00685 PF00005 ABC transporter D1093_RS00685 PF02687 FtsX-like permease family D1093_RS00690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1093_RS00695 PF02321 Outer membrane efflux protein D1093_RS00715 PF01580 FtsK/SpoIIIE family D1093_RS00715 PF09397 Ftsk gamma domain D1093_RS00715 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D1093_RS00715 PF17854 FtsK alpha domain D1093_RS00720 PF01494 FAD binding domain D1093_RS00780 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D1093_RS00790 PF04610 TrbL/VirB6 plasmid conjugal transfer protein D1093_RS00805 PF04610 TrbL/VirB6 plasmid conjugal transfer protein D1093_RS00815 PF04610 TrbL/VirB6 plasmid conjugal transfer protein D1093_RS00830 PF04610 TrbL/VirB6 plasmid conjugal transfer protein D1093_RS00845 PF04610 TrbL/VirB6 plasmid conjugal transfer protein D1093_RS00855 PF04610 TrbL/VirB6 plasmid conjugal transfer protein D1093_RS00865 PF04335 VirB8 protein D1093_RS00870 PF03524 Conjugal transfer protein D1093_RS00875 PF03743 Bacterial conjugation TrbI-like protein D1093_RS00880 PF00437 Type II/IV secretion system protein D1093_RS00885 PF13085 2Fe-2S iron-sulfur cluster binding domain D1093_RS00885 PF13237 4Fe-4S dicluster domain D1093_RS00890 PF02910 Fumarate reductase flavoprotein C-term D1093_RS00890 PF00890 FAD binding domain D1093_RS00905 PF01245 Ribosomal protein L19 D1093_RS00910 PF01746 tRNA (Guanine-1)-methyltransferase D1093_RS00915 PF05239 PRC-barrel domain D1093_RS00915 PF01782 RimM N-terminal domain D1093_RS00925 PF00589 Phage integrase family D1093_RS00925 PF02899 Phage integrase, N-terminal SAM-like domain D1093_RS00930 PF01722 BolA-like protein D1093_RS00935 PF00226 DnaJ domain D1093_RS00940 PF07728 AAA domain (dynein-related subfamily) D1093_RS00940 PF08406 CbbQ/NirQ/NorQ C-terminal D1093_RS00940 PF12556 Cobaltochelatase CobS subunit N terminal D1093_RS00945 PF11775 Cobalamin biosynthesis protein CobT VWA domain D1093_RS00945 PF06213 Cobalamin biosynthesis protein CobT D1093_RS00955 PF00830 Ribosomal L28 family D1093_RS00965 PF01808 AICARFT/IMPCHase bienzyme D1093_RS00965 PF02142 MGS-like domain D1093_RS00990 PF01189 16S rRNA methyltransferase RsmB/F D1093_RS00990 PF01029 NusB family D1093_RS00995 PF01435 Peptidase family M48 D1093_RS01005 PF00886 Ribosomal protein S16 D1093_RS01015 PF02881 SRP54-type protein, helical bundle domain D1093_RS01015 PF00448 SRP54-type protein, GTPase domain D1093_RS01015 PF02978 Signal peptide binding domain D1093_RS01020 PF00484 Carbonic anhydrase D1093_RS01025 PF05088 Bacterial NAD-glutamate dehydrogenase D1093_RS01040 PF00117 Glutamine amidotransferase class-I D1093_RS01055 PF00814 Glycoprotease family D1093_RS01065 PF00072 Response regulator receiver domain D1093_RS01065 PF00486 Transcriptional regulatory protein, C terminal D1093_RS01080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D1093_RS01080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D1093_RS01090 PF14698 Argininosuccinate lyase C-terminal D1093_RS01090 PF00206 Lyase D1093_RS01095 PF08534 Redoxin D1093_RS01100 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D1093_RS01110 PF02153 Prephenate dehydrogenase D1093_RS01120 PF00005 ABC transporter D1093_RS01150 PF08543 Phosphomethylpyrimidine kinase D1093_RS01165 PF07943 Penicillin-binding protein 5, C-terminal domain D1093_RS01165 PF00768 D-alanyl-D-alanine carboxypeptidase D1093_RS01170 PF07683 Cobalamin synthesis protein cobW C-terminal domain D1093_RS01170 PF02492 CobW/HypB/UreG, nucleotide-binding domain D1093_RS01175 PF03734 L,D-transpeptidase catalytic domain D1093_RS01180 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D1093_RS01185 PF00589 Phage integrase family D1093_RS01185 PF02899 Phage integrase, N-terminal SAM-like domain D1093_RS01190 PF01202 Shikimate kinase D1093_RS01195 PF01761 3-dehydroquinate synthase D1093_RS01205 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme D1093_RS01210 PF03334 Na+/H+ antiporter subunit D1093_RS01215 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D1093_RS01220 PF01899 Na+/H+ ion antiporter subunit D1093_RS01225 PF00361 Proton-conducting membrane transporter D1093_RS01230 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D1093_RS01235 PF13244 Domain of unknown function (DUF4040) D1093_RS01235 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D1093_RS01235 PF00361 Proton-conducting membrane transporter D1093_RS01235 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D1093_RS01245 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D1093_RS01250 PF03435 Saccharopine dehydrogenase NADP binding domain D1093_RS01250 PF16653 Saccharopine dehydrogenase C-terminal domain D1093_RS01255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1093_RS01255 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1093_RS01260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D1093_RS01260 PF00364 Biotin-requiring enzyme D1093_RS01260 PF02817 e3 binding domain D1093_RS01265 PF16078 2-oxoglutarate dehydrogenase N-terminus D1093_RS01265 PF00676 Dehydrogenase E1 component D1093_RS01265 PF02779 Transketolase, pyrimidine binding domain D1093_RS01265 PF16870 2-oxoglutarate dehydrogenase C-terminal D1093_RS01270 PF02629 CoA binding domain D1093_RS01270 PF00549 CoA-ligase D1093_RS01275 PF00549 CoA-ligase D1093_RS01275 PF08442 ATP-grasp domain D1093_RS01280 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D1093_RS01280 PF00056 lactate/malate dehydrogenase, NAD binding domain D1093_RS01285 PF03969 AFG1-like ATPase D1093_RS01290 PF02974 Protease inhibitor Inh D1093_RS01295 PF01678 Diaminopimelate epimerase D1093_RS01300 PF00919 Uncharacterized protein family UPF0004 D1093_RS01300 PF04055 Radical SAM superfamily D1093_RS01305 PF00448 SRP54-type protein, GTPase domain D1093_RS01305 PF02881 SRP54-type protein, helical bundle domain D1093_RS01310 PF04279 Intracellular septation protein A D1093_RS01315 PF16123 Hydroxyacylglutathione hydrolase C-terminus D1093_RS01315 PF00753 Metallo-beta-lactamase superfamily D1093_RS01330 PF02195 ParB-like nuclease domain D1093_RS01330 PF17762 HTH domain found in ParB protein D1093_RS01335 PF13614 AAA domain D1093_RS01340 PF02527 rRNA small subunit methyltransferase G D1093_RS01345 PF13932 GidA associated domain D1093_RS01345 PF01134 Glucose inhibited division protein A D1093_RS01350 PF01926 50S ribosome-binding GTPase D1093_RS01350 PF12631 MnmE helical domain D1093_RS01350 PF10396 GTP-binding protein TrmE N-terminus D1093_RS01355 PF07497 Rho termination factor, RNA-binding domain D1093_RS01355 PF07498 Rho termination factor, N-terminal domain D1093_RS01355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1093_RS01360 PF03618 Kinase/pyrophosphorylase D1093_RS01365 PF02545 Maf-like protein D1093_RS01370 PF01488 Shikimate / quinate 5-dehydrogenase D1093_RS01370 PF08501 Shikimate dehydrogenase substrate binding domain D1093_RS01370 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D1093_RS01375 PF01121 Dephospho-CoA kinase D1093_RS01380 PF00929 Exonuclease D1093_RS01385 PF01367 5'-3' exonuclease, C-terminal SAM fold D1093_RS01385 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D1093_RS01385 PF00476 DNA polymerase family A D1093_RS01385 PF01612 3'-5' exonuclease D1093_RS01395 PF01027 Inhibitor of apoptosis-promoting Bax1 D1093_RS01400 PF01252 Signal peptidase (SPase) II D1093_RS01405 PF00588 SpoU rRNA Methylase family D1093_RS01410 PF01170 Putative RNA methylase family UPF0020 D1093_RS01410 PF02926 THUMP domain D1093_RS01410 PF10672 S-adenosylmethionine-dependent methyltransferase D1093_RS01420 PF00216 Bacterial DNA-binding protein D1093_RS01435 PF00005 ABC transporter D1093_RS01440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1093_RS01450 PF04055 Radical SAM superfamily D1093_RS01465 PF01921 tRNA synthetases class I (K) D1093_RS01470 PF03144 Elongation factor Tu domain 2 D1093_RS01470 PF16658 Class II release factor RF3, C-terminal domain D1093_RS01470 PF00009 Elongation factor Tu GTP binding domain D1093_RS01475 PF12705 PD-(D/E)XK nuclease superfamily D1093_RS01480 PF00580 UvrD/REP helicase N-terminal domain D1093_RS01480 PF12705 PD-(D/E)XK nuclease superfamily D1093_RS01480 PF13361 UvrD-like helicase C-terminal domain D1093_RS01485 PF00085 Thioredoxin D1093_RS01490 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D1093_RS01495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS01495 PF00512 His Kinase A (phospho-acceptor) domain D1093_RS01500 PF05221 S-adenosyl-L-homocysteine hydrolase D1093_RS01500 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D1093_RS01505 PF11066 Protein of unknown function (DUF2867) D1093_RS01505 PF13460 NAD(P)H-binding D1093_RS01510 PF08245 Mur ligase middle domain D1093_RS01515 PF01039 Carboxyl transferase domain D1093_RS01525 PF02441 Flavoprotein D1093_RS01525 PF04127 DNA / pantothenate metabolism flavoprotein D1093_RS01530 PF03109 ABC1 family D1093_RS01535 PF01209 ubiE/COQ5 methyltransferase family D1093_RS01540 PF00986 DNA gyrase B subunit, carboxyl terminus D1093_RS01540 PF00204 DNA gyrase B D1093_RS01540 PF01751 Toprim domain D1093_RS01540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS01550 PF13335 Magnesium chelatase, subunit ChlI C-terminal D1093_RS01550 PF01078 Magnesium chelatase, subunit ChlI D1093_RS01555 PF01103 Surface antigen D1093_RS01555 PF07244 Surface antigen variable number repeat D1093_RS01555 PF17243 POTRA domain TamA domain 1 D1093_RS01565 PF00005 ABC transporter D1093_RS01565 PF00664 ABC transporter transmembrane region D1093_RS01570 PF00707 Translation initiation factor IF-3, C-terminal domain D1093_RS01570 PF05198 Translation initiation factor IF-3, N-terminal domain D1093_RS01585 PF01546 Peptidase family M20/M25/M40 D1093_RS01585 PF07687 Peptidase dimerisation domain D1093_RS01590 PF06969 HemN C-terminal domain D1093_RS01590 PF04055 Radical SAM superfamily D1093_RS01595 PF01725 Ham1 family D1093_RS01600 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding D1093_RS01600 PF01628 HrcA protein C terminal domain D1093_RS01605 PF01025 GrpE D1093_RS01615 PF00381 PTS HPr component phosphorylation site D1093_RS01620 PF03610 PTS system fructose IIA component D1093_RS01620 PF03830 PTS system sorbose subfamily IIB component D1093_RS01630 PF13756 Stimulus-sensing domain D1093_RS01630 PF00512 His Kinase A (phospho-acceptor) domain D1093_RS01630 PF00672 HAMP domain D1093_RS01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS01630 PF13755 Sensor N-terminal transmembrane domain D1093_RS01635 PF00072 Response regulator receiver domain D1093_RS01635 PF00486 Transcriptional regulatory protein, C terminal D1093_RS01640 PF01476 LysM domain D1093_RS01640 PF04972 BON domain D1093_RS01650 PF00012 Hsp70 protein D1093_RS01655 PF00226 DnaJ domain D1093_RS01655 PF01556 DnaJ C terminal domain D1093_RS01655 PF00684 DnaJ central domain D1093_RS01660 PF00696 Amino acid kinase family D1093_RS01670 PF03144 Elongation factor Tu domain 2 D1093_RS01670 PF00679 Elongation factor G C-terminus D1093_RS01670 PF00009 Elongation factor Tu GTP binding domain D1093_RS01670 PF06421 GTP-binding protein LepA C-terminus D1093_RS01675 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D1093_RS01675 PF14602 Hexapeptide repeat of succinyl-transferase D1093_RS01685 PF01416 tRNA pseudouridine synthase D1093_RS01690 PF02911 Formyl transferase, C-terminal domain D1093_RS01690 PF00551 Formyl transferase D1093_RS01695 PF01327 Polypeptide deformylase D1093_RS01700 PF02646 RmuC family D1093_RS01720 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D1093_RS01725 PF02224 Cytidylate kinase D1093_RS01730 PF00575 S1 RNA binding domain D1093_RS01735 PF06165 Glycosyltransferase family 36 D1093_RS01735 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain D1093_RS01735 PF10091 Putative glucoamylase D1093_RS01740 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family D1093_RS01740 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain D1093_RS01745 PF04304 Protein of unknown function (DUF454) D1093_RS01750 PF00950 ABC 3 transport family D1093_RS01755 PF00950 ABC 3 transport family D1093_RS01760 PF00005 ABC transporter D1093_RS01765 PF01297 Zinc-uptake complex component A periplasmic D1093_RS01770 PF01588 Putative tRNA binding domain D1093_RS01770 PF03484 tRNA synthetase B5 domain D1093_RS01770 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D1093_RS01770 PF03483 B3/4 domain D1093_RS01770 PF03147 Ferredoxin-fold anticodon binding domain D1093_RS01775 PF01409 tRNA synthetases class II core domain (F) D1093_RS01775 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D1093_RS01780 PF00453 Ribosomal protein L20 D1093_RS01785 PF01632 Ribosomal protein L35 D1093_RS01790 PF10576 Iron-sulfur binding domain of endonuclease III D1093_RS01790 PF00730 HhH-GPD superfamily base excision DNA repair protein D1093_RS01790 PF00633 Helix-hairpin-helix motif D1093_RS01795 PF00011 Hsp20/alpha crystallin family D1093_RS01805 PF00920 Dehydratase family D1093_RS01815 PF05192 MutS domain III D1093_RS01815 PF05188 MutS domain II D1093_RS01815 PF00488 MutS domain V D1093_RS01815 PF01624 MutS domain I D1093_RS01815 PF05190 MutS family domain IV D1093_RS01820 PF03949 Malic enzyme, NAD binding domain D1093_RS01820 PF01515 Phosphate acetyl/butaryl transferase D1093_RS01820 PF00390 Malic enzyme, N-terminal domain D1093_RS01825 PF02556 Preprotein translocase subunit SecB D1093_RS01830 PF04186 FxsA cytoplasmic membrane protein D1093_RS01850 PF00202 Aminotransferase class-III D1093_RS01860 PF01430 Hsp33 protein D1093_RS01870 PF08534 Redoxin D1093_RS01880 PF01578 Cytochrome C assembly protein D1093_RS01885 PF03379 CcmB protein D1093_RS01890 PF00005 ABC transporter D1093_RS01895 PF00694 Aconitase C-terminal domain D1093_RS01895 PF00330 Aconitase family (aconitate hydratase) D1093_RS01900 PF01649 Ribosomal protein S20 D1093_RS01905 PF00308 Bacterial dnaA protein D1093_RS01905 PF11638 DnaA N-terminal domain D1093_RS01905 PF08299 Bacterial dnaA protein helix-turn-helix D1093_RS01910 PF02768 DNA polymerase III beta subunit, C-terminal domain D1093_RS01910 PF02767 DNA polymerase III beta subunit, central domain D1093_RS01910 PF00712 DNA polymerase III beta subunit, N-terminal domain D1093_RS01915 PF02463 RecF/RecN/SMC N terminal domain D1093_RS01920 PF01220 Dehydroquinase class II D1093_RS01925 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D1093_RS01925 PF06481 COX Aromatic Rich Motif D1093_RS01930 PF00115 Cytochrome C and Quinol oxidase polypeptide I D1093_RS01935 PF00510 Cytochrome c oxidase subunit III D1093_RS01940 PF03626 Prokaryotic Cytochrome C oxidase subunit IV D1093_RS01945 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D1093_RS01945 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D1093_RS01955 PF02801 Beta-ketoacyl synthase, C-terminal domain D1093_RS01955 PF00109 Beta-ketoacyl synthase, N-terminal domain D1093_RS01960 PF07977 FabA-like domain D1093_RS01975 PF01165 Ribosomal protein S21 D1093_RS01980 PF01268 Formate--tetrahydrofolate ligase D1093_RS01995 PF00873 AcrB/AcrD/AcrF family D1093_RS02000 PF00342 Phosphoglucose isomerase D1093_RS02015 PF00829 Ribosomal prokaryotic L21 protein D1093_RS02020 PF01016 Ribosomal L27 protein D1093_RS02025 PF00381 PTS HPr component phosphorylation site D1093_RS02025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1093_RS02025 PF05524 PEP-utilising enzyme, N-terminal D1093_RS02025 PF00391 PEP-utilising enzyme, mobile domain D1093_RS02025 PF02896 PEP-utilising enzyme, TIM barrel domain D1093_RS02050 PF07690 Major Facilitator Superfamily D1093_RS02080 PF05662 Coiled stalk of trimeric autotransporter adhesin D1093_RS02080 PF05658 Head domain of trimeric autotransporter adhesin D1093_RS02080 PF03895 YadA-like membrane anchor domain D1093_RS02085 PF05658 Head domain of trimeric autotransporter adhesin D1093_RS02085 PF03895 YadA-like membrane anchor domain D1093_RS02085 PF05662 Coiled stalk of trimeric autotransporter adhesin D1093_RS02085 PF05658 Head domain of trimeric autotransporter adhesin D1093_RS02085 PF03895 YadA-like membrane anchor domain D1093_RS02085 PF05662 Coiled stalk of trimeric autotransporter adhesin D1093_RS02090 PF03895 YadA-like membrane anchor domain D1093_RS02090 PF05658 Head domain of trimeric autotransporter adhesin D1093_RS02090 PF05662 Coiled stalk of trimeric autotransporter adhesin D1093_RS02095 PF05658 Head domain of trimeric autotransporter adhesin D1093_RS02095 PF03895 YadA-like membrane anchor domain D1093_RS02095 PF05662 Coiled stalk of trimeric autotransporter adhesin D1093_RS02105 PF03895 YadA-like membrane anchor domain D1093_RS02105 PF05658 Head domain of trimeric autotransporter adhesin D1093_RS02105 PF05662 Coiled stalk of trimeric autotransporter adhesin D1093_RS02115 PF02541 Ppx/GppA phosphatase family D1093_RS02120 PF01728 FtsJ-like methyltransferase D1093_RS02125 PF01926 50S ribosome-binding GTPase D1093_RS02125 PF01018 GTP1/OBG D1093_RS02130 PF01472 PUA domain D1093_RS02130 PF00696 Amino acid kinase family D1093_RS02135 PF00171 Aldehyde dehydrogenase family D1093_RS02140 PF01467 Cytidylyltransferase-like D1093_RS02150 PF02590 Predicted SPOUT methyltransferase D1093_RS02160 PF13180 PDZ domain D1093_RS02160 PF03572 Peptidase family S41 D1093_RS02165 PF00293 NUDIX domain D1093_RS02170 PF06776 Invasion associated locus B (IalB) protein D1093_RS02175 PF02325 YGGT family D1093_RS02180 PF02594 Uncharacterised ACR, YggU family COG1872 D1093_RS02185 PF00719 Inorganic pyrophosphatase D1093_RS02190 PF00679 Elongation factor G C-terminus D1093_RS02190 PF00009 Elongation factor Tu GTP binding domain D1093_RS02190 PF03144 Elongation factor Tu domain 2 D1093_RS02195 PF03448 MgtE intracellular N domain D1093_RS02195 PF00571 CBS domain D1093_RS02195 PF01769 Divalent cation transporter D1093_RS02200 PF01432 Peptidase family M3 D1093_RS02210 PF13406 Transglycosylase SLT domain D1093_RS02215 PF00483 Nucleotidyl transferase D1093_RS02220 PF00571 CBS domain D1093_RS02220 PF01380 SIS domain D1093_RS02230 PF02954 Bacterial regulatory protein, Fis family D1093_RS02230 PF00158 Sigma-54 interaction domain D1093_RS02230 PF00072 Response regulator receiver domain D1093_RS02235 PF13091 PLD-like domain D1093_RS02240 PF00571 CBS domain D1093_RS02240 PF00478 IMP dehydrogenase / GMP reductase domain D1093_RS02245 PF01189 16S rRNA methyltransferase RsmB/F D1093_RS02245 PF01029 NusB family D1093_RS02250 PF00117 Glutamine amidotransferase class-I D1093_RS02250 PF00958 GMP synthase C terminal domain D1093_RS02250 PF02540 NAD synthase D1093_RS02255 PF03009 Glycerophosphoryl diester phosphodiesterase family D1093_RS02260 PF13416 Bacterial extracellular solute-binding protein D1093_RS02265 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS02270 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS02275 PF00005 ABC transporter D1093_RS02280 PF01297 Zinc-uptake complex component A periplasmic D1093_RS02285 PF00950 ABC 3 transport family D1093_RS02290 PF00005 ABC transporter D1093_RS02300 PF07972 NrdI Flavodoxin like D1093_RS02305 PF02867 Ribonucleotide reductase, barrel domain D1093_RS02305 PF00317 Ribonucleotide reductase, all-alpha domain D1093_RS02305 PF08343 Ribonucleotide reductase N-terminal D1093_RS02310 PF00268 Ribonucleotide reductase, small chain D1093_RS02315 PF17827 PrmC N-terminal domain D1093_RS02315 PF05175 Methyltransferase small domain D1093_RS02320 PF03462 PCRF domain D1093_RS02320 PF00472 RF-1 domain D1093_RS02325 PF01475 Ferric uptake regulator family D1093_RS02330 PF01043 SecA preprotein cross-linking domain D1093_RS02330 PF07516 SecA Wing and Scaffold domain D1093_RS02330 PF07517 SecA DEAD-like domain D1093_RS02330 PF02810 SEC-C motif D1093_RS02335 PF00639 PPIC-type PPIASE domain D1093_RS02340 PF01960 ArgJ family D1093_RS02345 PF00293 NUDIX domain D1093_RS02355 PF00883 Cytosol aminopeptidase family, catalytic domain D1093_RS02355 PF02789 Cytosol aminopeptidase family, N-terminal domain D1093_RS02360 PF00485 Phosphoribulokinase / Uridine kinase family D1093_RS02365 PF17763 Glutaminase/Asparaginase C-terminal domain D1093_RS02365 PF00710 Asparaginase, N-terminal D1093_RS02370 PF00227 Proteasome subunit D1093_RS02375 PF10431 C-terminal, D2-small domain, of ClpB protein D1093_RS02375 PF00004 ATPase family associated with various cellular activities (AAA) D1093_RS02375 PF07724 AAA domain (Cdc48 subfamily) D1093_RS02380 PF05175 Methyltransferase small domain D1093_RS02380 PF08468 Methyltransferase small domain N-terminal D1093_RS02385 PF00575 S1 RNA binding domain D1093_RS02385 PF03725 3' exoribonuclease family, domain 2 D1093_RS02385 PF01138 3' exoribonuclease family, domain 1 D1093_RS02385 PF00013 KH domain D1093_RS02385 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D1093_RS02390 PF00312 Ribosomal protein S15 D1093_RS02395 PF07690 Major Facilitator Superfamily D1093_RS02400 PF16198 tRNA pseudouridylate synthase B C-terminal domain D1093_RS02400 PF01509 TruB family pseudouridylate synthase (N terminal domain) D1093_RS02405 PF02033 Ribosome-binding factor A D1093_RS02410 PF11987 Translation-initiation factor 2 D1093_RS02410 PF08364 Bacterial translation initiation factor IF-2 associated region D1093_RS02410 PF04760 Translation initiation factor IF-2, N-terminal region D1093_RS02410 PF00009 Elongation factor Tu GTP binding domain D1093_RS02420 PF00575 S1 RNA binding domain D1093_RS02420 PF08529 NusA N-terminal domain D1093_RS02420 PF13184 NusA-like KH domain D1093_RS02425 PF02576 RimP N-terminal domain D1093_RS02425 PF17384 RimP C-terminal SH3 domain D1093_RS02430 PF02390 Putative methyltransferase D1093_RS02435 PF02773 S-adenosylmethionine synthetase, C-terminal domain D1093_RS02435 PF00438 S-adenosylmethionine synthetase, N-terminal domain D1093_RS02435 PF02772 S-adenosylmethionine synthetase, central domain D1093_RS02440 PF01381 Helix-turn-helix D1093_RS02445 PF00795 Carbon-nitrogen hydrolase D1093_RS02450 PF00571 CBS domain D1093_RS02450 PF03471 Transporter associated domain D1093_RS02455 PF02130 Uncharacterized protein family UPF0054 D1093_RS02460 PF02562 PhoH-like protein D1093_RS02465 PF01938 TRAM domain D1093_RS02465 PF04055 Radical SAM superfamily D1093_RS02465 PF00919 Uncharacterized protein family UPF0004 D1093_RS02470 PF00583 Acetyltransferase (GNAT) family D1093_RS02475 PF00814 Glycoprotease family D1093_RS02480 PF03601 Conserved hypothetical protein 698 D1093_RS02485 PF02132 RecR protein D1093_RS02485 PF13662 Toprim domain D1093_RS02490 PF02575 YbaB/EbfC DNA-binding family D1093_RS02495 PF12170 DNA polymerase III tau subunit V interacting with alpha D1093_RS02495 PF12169 DNA polymerase III subunits gamma and tau domain III D1093_RS02495 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding D1093_RS02510 PF01817 Chorismate mutase type II D1093_RS02510 PF00800 Prephenate dehydratase D1093_RS02515 PF02348 Cytidylyltransferase D1093_RS02520 PF00034 Cytochrome c D1093_RS02525 PF00899 ThiF family D1093_RS02530 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D1093_RS02530 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D1093_RS02540 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS02545 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS02550 PF00005 ABC transporter D1093_RS02555 PF01895 PhoU domain D1093_RS02565 PF02073 Thermophilic metalloprotease (M29) D1093_RS02570 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D1093_RS02570 PF06827 Zinc finger found in FPG and IleRS D1093_RS02570 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D1093_RS02580 PF00476 DNA polymerase family A D1093_RS02580 PF01612 3'-5' exonuclease D1093_RS02590 PF13505 Outer membrane protein beta-barrel domain D1093_RS02595 PF13505 Outer membrane protein beta-barrel domain D1093_RS02600 PF13505 Outer membrane protein beta-barrel domain D1093_RS02605 PF08264 Anticodon-binding domain of tRNA D1093_RS02605 PF00133 tRNA synthetases class I (I, L, M and V) D1093_RS02615 PF14437 MafB19-like deaminase D1093_RS02620 PF01479 S4 domain D1093_RS02620 PF00849 RNA pseudouridylate synthase D1093_RS02640 PF01523 Putative modulator of DNA gyrase D1093_RS02645 PF00459 Inositol monophosphatase family D1093_RS02655 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D1093_RS02660 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D1093_RS02670 PF08676 MutL C terminal dimerisation domain D1093_RS02670 PF01119 DNA mismatch repair protein, C-terminal domain D1093_RS02675 PF00692 dUTPase D1093_RS02680 PF01070 FMN-dependent dehydrogenase D1093_RS02725 PF00324 Amino acid permease D1093_RS02730 PF00005 ABC transporter D1093_RS02735 PF02361 Cobalt transport protein D1093_RS02740 PF02632 BioY family D1093_RS02755 PF00589 Phage integrase family D1093_RS02755 PF13356 Arm DNA-binding domain D1093_RS02770 PF04221 RelB antitoxin D1093_RS02775 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ D1093_RS02820 PF08346 AntA/AntB antirepressor D1093_RS02820 PF10548 P22AR C-terminal domain D1093_RS02860 PF04984 Phage tail sheath protein subtilisin-like domain D1093_RS02860 PF17482 Phage tail sheath C-terminal domain D1093_RS02935 PF01381 Helix-turn-helix D1093_RS03010 PF04221 RelB antitoxin D1093_RS03015 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ D1093_RS03025 PF10548 P22AR C-terminal domain D1093_RS03025 PF08346 AntA/AntB antirepressor D1093_RS03050 PF01381 Helix-turn-helix D1093_RS03050 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D1093_RS03060 PF00436 Single-strand binding protein family D1093_RS03100 PF02075 Crossover junction endodeoxyribonuclease RuvC D1093_RS03175 PF10548 P22AR C-terminal domain D1093_RS03175 PF08346 AntA/AntB antirepressor D1093_RS03185 PF00291 Pyridoxal-phosphate dependent enzyme D1093_RS03185 PF00585 C-terminal regulatory domain of Threonine dehydratase D1093_RS03195 PF00270 DEAD/DEAH box helicase D1093_RS03195 PF00271 Helicase conserved C-terminal domain D1093_RS03235 PF10548 P22AR C-terminal domain D1093_RS03235 PF08346 AntA/AntB antirepressor D1093_RS03295 PF00436 Single-strand binding protein family D1093_RS03325 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D1093_RS03325 PF04851 Type III restriction enzyme, res subunit D1093_RS03325 PF00271 Helicase conserved C-terminal domain D1093_RS03325 PF08463 EcoEI R protein C-terminal D1093_RS03350 PF00589 Phage integrase family D1093_RS03350 PF13356 Arm DNA-binding domain D1093_RS03370 PF00589 Phage integrase family D1093_RS03370 PF13356 Arm DNA-binding domain D1093_RS03430 PF05973 Phage derived protein Gp49-like (DUF891) D1093_RS03465 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D1093_RS03465 PF01464 Transglycosylase SLT domain D1093_RS03540 PF02321 Outer membrane efflux protein D1093_RS03550 PF10458 Valyl tRNA synthetase tRNA binding arm D1093_RS03550 PF08264 Anticodon-binding domain of tRNA D1093_RS03550 PF00133 tRNA synthetases class I (I, L, M and V) D1093_RS03555 PF08238 Sel1 repeat D1093_RS03560 PF00005 ABC transporter D1093_RS03565 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS03570 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS03575 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1093_RS03585 PF00164 Ribosomal protein S12/S23 D1093_RS03590 PF00177 Ribosomal protein S7p/S5e D1093_RS03595 PF14492 Elongation Factor G, domain II D1093_RS03595 PF00679 Elongation factor G C-terminus D1093_RS03595 PF03764 Elongation factor G, domain IV D1093_RS03595 PF00009 Elongation factor Tu GTP binding domain D1093_RS03595 PF03144 Elongation factor Tu domain 2 D1093_RS03600 PF00009 Elongation factor Tu GTP binding domain D1093_RS03600 PF03143 Elongation factor Tu C-terminal domain D1093_RS03600 PF03144 Elongation factor Tu domain 2 D1093_RS03605 PF00338 Ribosomal protein S10p/S20e D1093_RS03610 PF00297 Ribosomal protein L3 D1093_RS03615 PF00573 Ribosomal protein L4/L1 family D1093_RS03620 PF00276 Ribosomal protein L23 D1093_RS03625 PF00181 Ribosomal Proteins L2, RNA binding domain D1093_RS03625 PF03947 Ribosomal Proteins L2, C-terminal domain D1093_RS03630 PF00203 Ribosomal protein S19 D1093_RS03635 PF00237 Ribosomal protein L22p/L17e D1093_RS03640 PF00189 Ribosomal protein S3, C-terminal domain D1093_RS03640 PF07650 KH domain D1093_RS03645 PF00252 Ribosomal protein L16p/L10e D1093_RS03650 PF00831 Ribosomal L29 protein D1093_RS03655 PF00366 Ribosomal protein S17 D1093_RS03660 PF00238 Ribosomal protein L14p/L23e D1093_RS03665 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D1093_RS03665 PF00467 KOW motif D1093_RS03670 PF00673 ribosomal L5P family C-terminus D1093_RS03670 PF00281 Ribosomal protein L5 D1093_RS03675 PF00253 Ribosomal protein S14p/S29e D1093_RS03680 PF00410 Ribosomal protein S8 D1093_RS03685 PF00347 Ribosomal protein L6 D1093_RS03690 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D1093_RS03695 PF03719 Ribosomal protein S5, C-terminal domain D1093_RS03695 PF00333 Ribosomal protein S5, N-terminal domain D1093_RS03700 PF00327 Ribosomal protein L30p/L7e D1093_RS03705 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D1093_RS03710 PF00344 SecY translocase D1093_RS03720 PF00416 Ribosomal protein S13/S18 D1093_RS03725 PF00411 Ribosomal protein S11 D1093_RS03730 PF01000 RNA polymerase Rpb3/RpoA insert domain D1093_RS03730 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D1093_RS03730 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D1093_RS03735 PF01196 Ribosomal protein L17 D1093_RS03740 PF13180 PDZ domain D1093_RS03740 PF17820 PDZ domain D1093_RS03745 PF12002 MgsA AAA+ ATPase C terminal D1093_RS03745 PF00004 ATPase family associated with various cellular activities (AAA) D1093_RS03745 PF16193 AAA C-terminal domain D1093_RS03750 PF00154 recA bacterial DNA recombination protein D1093_RS03755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D1093_RS03755 PF02272 DHHA1 domain D1093_RS03755 PF01411 tRNA synthetases class II (A) D1093_RS03760 PF00664 ABC transporter transmembrane region D1093_RS03760 PF00005 ABC transporter D1093_RS03765 PF00849 RNA pseudouridylate synthase D1093_RS03765 PF01479 S4 domain D1093_RS03795 PF00072 Response regulator receiver domain D1093_RS03800 PF00380 Ribosomal protein S9/S16 D1093_RS03805 PF00572 Ribosomal protein L13 D1093_RS03810 PF17768 RecJ OB domain D1093_RS03810 PF01368 DHH family D1093_RS03810 PF02272 DHHA1 domain D1093_RS03815 PF01751 Toprim domain D1093_RS03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS03815 PF00986 DNA gyrase B subunit, carboxyl terminus D1093_RS03815 PF00204 DNA gyrase B D1093_RS03820 PF03099 Biotin/lipoate A/B protein ligase family D1093_RS03825 PF04536 TPM domain D1093_RS03835 PF00221 Aromatic amino acid lyase D1093_RS03845 PF00324 Amino acid permease D1093_RS03905 PF00120 Glutamine synthetase, catalytic domain D1093_RS03905 PF03951 Glutamine synthetase, beta-Grasp domain D1093_RS03910 PF00543 Nitrogen regulatory protein P-II D1093_RS03915 PF17755 UvrA DNA-binding domain D1093_RS03915 PF17760 UvrA interaction domain D1093_RS03920 PF00436 Single-strand binding protein family D1093_RS03925 PF00521 DNA gyrase/topoisomerase IV, subunit A D1093_RS03925 PF03989 DNA gyrase C-terminal domain, beta-propeller D1093_RS03930 PF01467 Cytidylyltransferase-like D1093_RS03935 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D1093_RS03940 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D1093_RS03945 PF01702 Queuine tRNA-ribosyltransferase D1093_RS03950 PF07690 Major Facilitator Superfamily D1093_RS03955 PF07690 Major Facilitator Superfamily D1093_RS03960 PF00180 Isocitrate/isopropylmalate dehydrogenase D1093_RS03970 PF03447 Homoserine dehydrogenase, NAD binding domain D1093_RS03970 PF00742 Homoserine dehydrogenase D1093_RS03970 PF01842 ACT domain D1093_RS03975 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D1093_RS03980 PF01063 Amino-transferase class IV D1093_RS03995 PF00750 tRNA synthetases class I (R) D1093_RS03995 PF05746 DALR anticodon binding domain D1093_RS03995 PF03485 Arginyl tRNA synthetase N terminal domain D1093_RS04000 PF13286 Phosphohydrolase-associated domain D1093_RS04000 PF01966 HD domain D1093_RS04005 PF01521 Iron-sulphur cluster biosynthesis D1093_RS04015 PF02683 Cytochrome C biogenesis protein transmembrane region D1093_RS04020 PF14602 Hexapeptide repeat of succinyl-transferase D1093_RS04020 PF12804 MobA-like NTP transferase domain D1093_RS04020 PF00132 Bacterial transferase hexapeptide (six repeats) D1093_RS04025 PF01380 SIS domain D1093_RS04030 PF00270 DEAD/DEAH box helicase D1093_RS04030 PF17191 RecG wedge domain D1093_RS04030 PF00271 Helicase conserved C-terminal domain D1093_RS04035 PF02811 PHP domain D1093_RS04035 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D1093_RS04035 PF07733 Bacterial DNA polymerase III alpha NTPase domain D1093_RS04035 PF14579 Helix-hairpin-helix motif D1093_RS04040 PF01494 FAD binding domain D1093_RS04050 PF17941 Polyphosphate kinase C-terminal domain 1 D1093_RS04050 PF13089 Polyphosphate kinase N-terminal domain D1093_RS04050 PF02503 Polyphosphate kinase middle domain D1093_RS04050 PF13090 Polyphosphate kinase C-terminal domain 2 D1093_RS04055 PF02541 Ppx/GppA phosphatase family D1093_RS04060 PF01612 3'-5' exonuclease D1093_RS04060 PF00570 HRDC domain D1093_RS04065 PF01336 OB-fold nucleic acid binding domain D1093_RS04065 PF02938 GAD domain D1093_RS04065 PF00152 tRNA synthetases class II (D, K and N) D1093_RS04070 PF03989 DNA gyrase C-terminal domain, beta-propeller D1093_RS04070 PF00521 DNA gyrase/topoisomerase IV, subunit A D1093_RS04075 PF07690 Major Facilitator Superfamily D1093_RS04080 PF00462 Glutaredoxin D1093_RS04090 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D1093_RS04090 PF02769 AIR synthase related protein, C-terminal domain D1093_RS04090 PF00586 AIR synthase related protein, N-terminal domain D1093_RS04100 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase D1093_RS04105 PF01259 SAICAR synthetase D1093_RS04115 PF10397 Adenylosuccinate lyase C-terminus D1093_RS04115 PF00206 Lyase D1093_RS04120 PF00834 Ribulose-phosphate 3 epimerase family D1093_RS04125 PF01613 Flavin reductase like domain D1093_RS04130 PF01258 Prokaryotic dksA/traR C4-type zinc finger D1093_RS04140 PF00512 His Kinase A (phospho-acceptor) domain D1093_RS04140 PF08448 PAS fold D1093_RS04140 PF00072 Response regulator receiver domain D1093_RS04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS04140 PF13188 PAS domain D1093_RS04145 PF00551 Formyl transferase D1093_RS04150 PF02769 AIR synthase related protein, C-terminal domain D1093_RS04150 PF00586 AIR synthase related protein, N-terminal domain D1093_RS04155 PF01594 AI-2E family transporter D1093_RS04215 PF10548 P22AR C-terminal domain D1093_RS04215 PF08346 AntA/AntB antirepressor D1093_RS04275 PF18836 Beta solenoid repeat from YDCK D1093_RS04280 PF00436 Single-strand binding protein family D1093_RS04290 PF18836 Beta solenoid repeat from YDCK D1093_RS04305 PF00271 Helicase conserved C-terminal domain D1093_RS04305 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D1093_RS04305 PF04851 Type III restriction enzyme, res subunit D1093_RS04305 PF08463 EcoEI R protein C-terminal D1093_RS04310 PF08479 POTRA domain, ShlB-type D1093_RS04310 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB D1093_RS04310 PF17287 POTRA domain D1093_RS04315 PF05594 Haemagluttinin repeat D1093_RS04315 PF13332 Hemagglutinin repeat D1093_RS04315 PF15526 Novel toxin 21 D1093_RS04315 PF04829 Pre-toxin domain with VENN motif D1093_RS04315 PF15526 Novel toxin 21 D1093_RS04315 PF05860 haemagglutination activity domain D1093_RS04315 PF05860 haemagglutination activity domain D1093_RS04315 PF05594 Haemagluttinin repeat D1093_RS04315 PF13332 Hemagglutinin repeat D1093_RS04315 PF04829 Pre-toxin domain with VENN motif D1093_RS04325 PF15526 Novel toxin 21 D1093_RS04325 PF04829 Pre-toxin domain with VENN motif D1093_RS04325 PF05860 haemagglutination activity domain D1093_RS04325 PF13332 Hemagglutinin repeat D1093_RS04325 PF05594 Haemagluttinin repeat D1093_RS04335 PF04829 Pre-toxin domain with VENN motif D1093_RS04335 PF05860 haemagglutination activity domain D1093_RS04335 PF13332 Hemagglutinin repeat D1093_RS04335 PF05594 Haemagluttinin repeat D1093_RS04350 PF04829 Pre-toxin domain with VENN motif D1093_RS04350 PF15526 Novel toxin 21 D1093_RS04350 PF05594 Haemagluttinin repeat D1093_RS04350 PF13332 Hemagglutinin repeat D1093_RS04350 PF05860 haemagglutination activity domain D1093_RS04380 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D1093_RS04385 PF10548 P22AR C-terminal domain D1093_RS04385 PF08346 AntA/AntB antirepressor D1093_RS04415 PF02075 Crossover junction endodeoxyribonuclease RuvC D1093_RS04490 PF00709 Adenylosuccinate synthetase D1093_RS04500 PF04545 Sigma-70, region 4 D1093_RS04500 PF04542 Sigma-70 region 2 D1093_RS04500 PF00140 Sigma-70 factor, region 1.2 D1093_RS04505 PF00849 RNA pseudouridylate synthase D1093_RS04510 PF00171 Aldehyde dehydrogenase family D1093_RS04515 PF09397 Ftsk gamma domain D1093_RS04515 PF01580 FtsK/SpoIIIE family D1093_RS04515 PF17854 FtsK alpha domain D1093_RS04515 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D1093_RS04520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS04520 PF13188 PAS domain D1093_RS04520 PF00989 PAS fold D1093_RS04520 PF00512 His Kinase A (phospho-acceptor) domain D1093_RS04525 PF01741 Large-conductance mechanosensitive channel, MscL D1093_RS04535 PF01180 Dihydroorotate dehydrogenase D1093_RS04625 PF00120 Glutamine synthetase, catalytic domain D1093_RS04630 PF01266 FAD dependent oxidoreductase D1093_RS04635 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D1093_RS04635 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D1093_RS04640 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D1093_RS04645 PF00920 Dehydratase family D1093_RS04650 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D1093_RS04650 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D1093_RS04660 PF04452 RNA methyltransferase D1093_RS04665 PF04107 Glutamate-cysteine ligase family 2(GCS2) D1093_RS04675 PF00375 Sodium:dicarboxylate symporter family D1093_RS04680 PF08241 Methyltransferase domain D1093_RS04690 PF00462 Glutaredoxin D1093_RS04695 PF08241 Methyltransferase domain D1093_RS04700 PF13840 ACT domain D1093_RS04700 PF00696 Amino acid kinase family D1093_RS04700 PF01842 ACT domain D1093_RS04705 PF02223 Thymidylate kinase D1093_RS04715 PF06965 Na+/H+ antiporter 1 D1093_RS04725 PF03600 Citrate transporter D1093_RS04725 PF02080 TrkA-C domain D1093_RS04735 PF01926 50S ribosome-binding GTPase D1093_RS04735 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D1093_RS04745 PF00119 ATP synthase A chain D1093_RS04750 PF00137 ATP synthase subunit C D1093_RS04755 PF00430 ATP synthase B/B' CF(0) D1093_RS04760 PF00430 ATP synthase B/B' CF(0) D1093_RS04765 PF02092 Glycyl-tRNA synthetase beta subunit D1093_RS04765 PF05746 DALR anticodon binding domain D1093_RS04770 PF02091 Glycyl-tRNA synthetase alpha subunit D1093_RS04780 PF00348 Polyprenyl synthetase D1093_RS04790 PF01343 Peptidase family S49 D1093_RS04790 PF06965 Na+/H+ antiporter 1 D1093_RS04795 PF08544 GHMP kinases C terminal D1093_RS04800 PF01351 Ribonuclease HII D1093_RS04805 PF01300 Telomere recombination D1093_RS04805 PF03481 Putative GTP-binding controlling metal-binding D1093_RS04810 PF02913 FAD linked oxidases, C-terminal domain D1093_RS04810 PF01565 FAD binding domain D1093_RS04820 PF02843 Phosphoribosylglycinamide synthetase, C domain D1093_RS04820 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D1093_RS04820 PF02844 Phosphoribosylglycinamide synthetase, N domain D1093_RS04825 PF01040 UbiA prenyltransferase family D1093_RS04830 PF01243 Pyridoxamine 5'-phosphate oxidase D1093_RS04830 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D1093_RS04835 PF01556 DnaJ C terminal domain D1093_RS04835 PF00226 DnaJ domain D1093_RS04845 PF01264 Chorismate synthase D1093_RS04850 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D1093_RS04850 PF00925 GTP cyclohydrolase II D1093_RS04855 PF02609 Exonuclease VII small subunit D1093_RS04860 PF02780 Transketolase, C-terminal domain D1093_RS04860 PF02779 Transketolase, pyrimidine binding domain D1093_RS04860 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D1093_RS04865 PF01728 FtsJ-like methyltransferase D1093_RS04865 PF01479 S4 domain D1093_RS04870 PF05958 tRNA (Uracil-5-)-methyltransferase D1093_RS04880 PF01523 Putative modulator of DNA gyrase D1093_RS04890 PF01040 UbiA prenyltransferase family D1093_RS04895 PF02401 LytB protein D1093_RS04900 PF01636 Phosphotransferase enzyme family D1093_RS04905 PF00075 RNase H D1093_RS04915 PF02622 Uncharacterized ACR, COG1678 D1093_RS04920 PF00498 FHA domain D1093_RS04920 PF00990 Diguanylate cyclase, GGDEF domain D1093_RS04920 PF00563 EAL domain D1093_RS04925 PF00675 Insulinase (Peptidase family M16) D1093_RS04925 PF05193 Peptidase M16 inactive domain D1093_RS04930 PF14821 Threonine synthase N terminus D1093_RS04930 PF00291 Pyridoxal-phosphate dependent enzyme D1093_RS04960 PF18755 Restriction Enzyme Adenine Methylase Associated D1093_RS04960 PF01555 DNA methylase D1093_RS04970 PF14815 NUDIX domain D1093_RS04970 PF00730 HhH-GPD superfamily base excision DNA repair protein D1093_RS04980 PF13462 Thioredoxin D1093_RS04985 PF00391 PEP-utilising enzyme, mobile domain D1093_RS04985 PF02896 PEP-utilising enzyme, TIM barrel domain D1093_RS04985 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D1093_RS05005 PF02657 Fe-S metabolism associated domain D1093_RS05010 PF05443 ROS/MUCR transcriptional regulator protein D1093_RS05015 PF00326 Prolyl oligopeptidase family D1093_RS05015 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D1093_RS05020 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D1093_RS05020 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D1093_RS05030 PF02794 RTX toxin acyltransferase family D1093_RS05080 PF00905 Penicillin binding protein transpeptidase domain D1093_RS05080 PF00912 Transglycosylase D1093_RS05090 PF00072 Response regulator receiver domain D1093_RS05090 PF00486 Transcriptional regulatory protein, C terminal D1093_RS05095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS05105 PF03100 CcmE D1093_RS05110 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D1093_RS05110 PF01578 Cytochrome C assembly protein D1093_RS05115 PF03918 Cytochrome C biogenesis protein D1093_RS05120 PF13180 PDZ domain D1093_RS05120 PF17820 PDZ domain D1093_RS05125 PF00486 Transcriptional regulatory protein, C terminal D1093_RS05125 PF00072 Response regulator receiver domain D1093_RS05130 PF00672 HAMP domain D1093_RS05130 PF00512 His Kinase A (phospho-acceptor) domain D1093_RS05130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS05135 PF08335 GlnD PII-uridylyltransferase D1093_RS05135 PF03710 Glutamate-ammonia ligase adenylyltransferase D1093_RS05140 PF13505 Outer membrane protein beta-barrel domain D1093_RS05165 PF17863 AAA lid domain D1093_RS05165 PF07726 ATPase family associated with various cellular activities (AAA) D1093_RS05170 PF13735 tRNA nucleotidyltransferase domain 2 putative D1093_RS05170 PF12627 Probable RNA and SrmB- binding site of polymerase A D1093_RS05170 PF01743 Poly A polymerase head domain D1093_RS05175 PF00588 SpoU rRNA Methylase family D1093_RS05180 PF00355 Rieske [2Fe-2S] domain D1093_RS05180 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D1093_RS05185 PF00033 Cytochrome b/b6/petB D1093_RS05185 PF00032 Cytochrome b(C-terminal)/b6/petD D1093_RS05190 PF02167 Cytochrome C1 family D1093_RS05190 PF00033 Cytochrome b/b6/petB D1093_RS05190 PF00032 Cytochrome b(C-terminal)/b6/petD D1093_RS05200 PF06071 Protein of unknown function (DUF933) D1093_RS05200 PF01926 50S ribosome-binding GTPase D1093_RS05205 PF17969 L,D-transpeptidase C-terminal domain D1093_RS05205 PF03734 L,D-transpeptidase catalytic domain D1093_RS05210 PF01195 Peptidyl-tRNA hydrolase D1093_RS05215 PF01386 Ribosomal L25p family D1093_RS05215 PF14693 Ribosomal protein TL5, C-terminal domain D1093_RS05225 PF14572 Phosphoribosyl synthetase-associated domain D1093_RS05225 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D1093_RS05230 PF02578 Multi-copper polyphenol oxidoreductase laccase D1093_RS05240 PF01790 Prolipoprotein diacylglyceryl transferase D1093_RS05255 PF00512 His Kinase A (phospho-acceptor) domain D1093_RS05255 PF00672 HAMP domain D1093_RS05255 PF16527 Two-component sensor protein CpxA, periplasmic domain D1093_RS05255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS05260 PF00486 Transcriptional regulatory protein, C terminal D1093_RS05260 PF00072 Response regulator receiver domain D1093_RS05265 PF00753 Metallo-beta-lactamase superfamily D1093_RS05275 PF04851 Type III restriction enzyme, res subunit D1093_RS05275 PF02151 UvrB/uvrC motif D1093_RS05275 PF12344 Ultra-violet resistance protein B D1093_RS05275 PF00271 Helicase conserved C-terminal domain D1093_RS05275 PF17757 UvrB interaction domain D1093_RS05285 PF03449 Transcription elongation factor, N-terminal D1093_RS05285 PF01272 Transcription elongation factor, GreA/GreB, C-term D1093_RS05290 PF00534 Glycosyl transferases group 1 D1093_RS05295 PF02386 Cation transport protein D1093_RS05300 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1093_RS05305 PF03466 LysR substrate binding domain D1093_RS05305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1093_RS05310 PF00155 Aminotransferase class I and II D1093_RS05315 PF00313 'Cold-shock' DNA-binding domain D1093_RS05320 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D1093_RS05320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D1093_RS05320 PF02142 MGS-like domain D1093_RS05325 PF02805 Metal binding domain of Ada D1093_RS05325 PF12833 Helix-turn-helix domain D1093_RS05325 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D1093_RS05325 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D1093_RS05330 PF00989 PAS fold D1093_RS05330 PF00512 His Kinase A (phospho-acceptor) domain D1093_RS05330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS05335 PF01433 Peptidase family M1 domain D1093_RS05335 PF11940 Domain of unknown function (DUF3458) Ig-like fold D1093_RS05335 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D1093_RS05345 PF08543 Phosphomethylpyrimidine kinase D1093_RS05350 PF02581 Thiamine monophosphate synthase D1093_RS05355 PF05690 Thiazole biosynthesis protein ThiG D1093_RS05365 PF01266 FAD dependent oxidoreductase D1093_RS05370 PF01964 Radical SAM ThiC family D1093_RS05370 PF13667 ThiC-associated domain D1093_RS05375 PF07484 Phage Tail Collar Domain D1093_RS05380 PF00005 ABC transporter D1093_RS05385 PF01032 FecCD transport family D1093_RS05390 PF01497 Periplasmic binding protein D1093_RS05395 PF05171 Haemin-degrading HemS.ChuX domain D1093_RS05400 PF00593 TonB dependent receptor D1093_RS05400 PF07715 TonB-dependent Receptor Plug Domain D1093_RS05410 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D1093_RS05410 PF01464 Transglycosylase SLT domain D1093_RS05415 PF00701 Dihydrodipicolinate synthetase family D1093_RS05420 PF01668 SmpB protein D1093_RS05425 PF03167 Uracil DNA glycosylase superfamily D1093_RS05430 PF01192 RNA polymerase Rpb6 D1093_RS05435 PF02824 TGS domain D1093_RS05435 PF04607 Region found in RelA / SpoT proteins D1093_RS05435 PF13291 ACT domain D1093_RS05440 PF00156 Phosphoribosyl transferase domain D1093_RS05450 PF01648 4'-phosphopantetheinyl transferase superfamily D1093_RS05455 PF10502 Signal peptidase, peptidase S26 D1093_RS05460 PF14622 Ribonuclease-III-like D1093_RS05460 PF00035 Double-stranded RNA binding motif D1093_RS05465 PF07650 KH domain D1093_RS05465 PF01926 50S ribosome-binding GTPase D1093_RS05470 PF11967 Recombination protein O N terminal D1093_RS05470 PF02565 Recombination protein O C terminal D1093_RS05475 PF02569 Pantoate-beta-alanine ligase D1093_RS05480 PF02548 Ketopantoate hydroxymethyltransferase D1093_RS05485 PF01966 HD domain D1093_RS05490 PF01571 Aminomethyltransferase folate-binding domain D1093_RS05495 PF01979 Amidohydrolase family D1093_RS05510 PF01406 tRNA synthetases class I (C) catalytic domain D1093_RS05520 PF00005 ABC transporter D1093_RS05520 PF00664 ABC transporter transmembrane region D1093_RS05525 PF02666 Phosphatidylserine decarboxylase D1093_RS05530 PF01066 CDP-alcohol phosphatidyltransferase D1093_RS05535 PF00106 short chain dehydrogenase D1093_RS05540 PF13537 Glutamine amidotransferase domain D1093_RS05540 PF00156 Phosphoribosyl transferase domain D1093_RS05550 PF18073 Rubredoxin metal binding domain D1093_RS05550 PF06745 KaiC D1093_RS05555 PF03796 DnaB-like helicase C terminal domain D1093_RS05555 PF00772 DnaB-like helicase N terminal domain D1093_RS05560 PF01281 Ribosomal protein L9, N-terminal domain D1093_RS05560 PF03948 Ribosomal protein L9, C-terminal domain D1093_RS05570 PF01084 Ribosomal protein S18 D1093_RS05575 PF01250 Ribosomal protein S6 D1093_RS05585 PF01569 PAP2 superfamily D1093_RS05590 PF00698 Acyl transferase domain D1093_RS05600 PF00550 Phosphopantetheine attachment site D1093_RS05605 PF00109 Beta-ketoacyl synthase, N-terminal domain D1093_RS05605 PF02801 Beta-ketoacyl synthase, C-terminal domain D1093_RS05610 PF02618 YceG-like family D1093_RS05615 PF00625 Guanylate kinase D1093_RS05620 PF00398 Ribosomal RNA adenine dimethylase D1093_RS05625 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D1093_RS05635 PF03968 OstA-like protein D1093_RS05635 PF04453 LPS transport system D D1093_RS05665 PF00083 Sugar (and other) transporter D1093_RS05665 PF07690 Major Facilitator Superfamily D1093_RS05675 PF03797 Autotransporter beta-domain D1093_RS05675 PF16168 Adhesin of bacterial autotransporter system, probable stalk D1093_RS05675 PF13018 Extended Signal Peptide of Type V secretion system D1093_RS05675 PF03212 Pertactin D1093_RS05685 PF00334 Nucleoside diphosphate kinase D1093_RS05690 PF01066 CDP-alcohol phosphatidyltransferase D1093_RS05695 PF08459 UvrC Helix-hairpin-helix N-terminal D1093_RS05695 PF02151 UvrB/uvrC motif D1093_RS05695 PF12826 Helix-hairpin-helix motif D1093_RS05695 PF01541 GIY-YIG catalytic domain D1093_RS05700 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D1093_RS05705 PF02416 mttA/Hcf106 family D1093_RS05710 PF02416 mttA/Hcf106 family D1093_RS05715 PF00902 Sec-independent protein translocase protein (TatC) D1093_RS05720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1093_RS05720 PF02403 Seryl-tRNA synthetase N-terminal domain D1093_RS05730 PF01551 Peptidase family M23 D1093_RS05730 PF01476 LysM domain D1093_RS05735 PF02699 Preprotein translocase subunit D1093_RS05755 PF00121 Triosephosphate isomerase D1093_RS05760 PF03840 Preprotein translocase SecG subunit D1093_RS05765 PF00117 Glutamine amidotransferase class-I D1093_RS05765 PF06418 CTP synthase N-terminus D1093_RS05770 PF00793 DAHP synthetase I family D1093_RS05775 PF03952 Enolase, N-terminal domain D1093_RS05775 PF00113 Enolase, C-terminal TIM barrel domain D1093_RS05785 PF05154 TM2 domain D1093_RS05790 PF05154 TM2 domain D1093_RS05800 PF00676 Dehydrogenase E1 component D1093_RS05805 PF02780 Transketolase, C-terminal domain D1093_RS05805 PF02779 Transketolase, pyrimidine binding domain D1093_RS05805 PF00364 Biotin-requiring enzyme D1093_RS05810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D1093_RS05810 PF00364 Biotin-requiring enzyme D1093_RS05810 PF02817 e3 binding domain D1093_RS05815 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1093_RS05815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1093_RS05820 PF04055 Radical SAM superfamily D1093_RS05825 PF03364 Polyketide cyclase / dehydrase and lipid transport D1093_RS05830 PF00994 Probable molybdopterin binding domain D1093_RS05830 PF02464 Competence-damaged protein D1093_RS05830 PF18146 Damage-inducible protein CinA KH domain D1093_RS05835 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D1093_RS05835 PF02542 YgbB family D1093_RS05840 PF02082 Transcriptional regulator D1093_RS05845 PF00512 His Kinase A (phospho-acceptor) domain D1093_RS05845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1093_RS05845 PF00672 HAMP domain D1093_RS05845 PF00989 PAS fold D1093_RS05850 PF02954 Bacterial regulatory protein, Fis family D1093_RS05850 PF00158 Sigma-54 interaction domain D1093_RS05850 PF00072 Response regulator receiver domain D1093_RS05855 PF02254 TrkA-N domain D1093_RS05855 PF02080 TrkA-C domain D1093_RS05865 PF00574 Clp protease D1093_RS05870 PF06689 ClpX C4-type zinc finger D1093_RS05870 PF10431 C-terminal, D2-small domain, of ClpB protein D1093_RS05870 PF07724 AAA domain (Cdc48 subfamily) D1093_RS05875 PF02190 ATP-dependent protease La (LON) substrate-binding domain D1093_RS05875 PF05362 Lon protease (S16) C-terminal proteolytic domain D1093_RS05875 PF00004 ATPase family associated with various cellular activities (AAA) D1093_RS05880 PF00216 Bacterial DNA-binding protein D1093_RS05885 PF01134 Glucose inhibited division protein A D1093_RS05895 PF05698 Bacterial trigger factor protein (TF) C-terminus D1093_RS05895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1093_RS05895 PF05697 Bacterial trigger factor protein (TF) D1093_RS05900 PF02934 GatB/GatE catalytic domain D1093_RS05900 PF02637 GatB domain D1093_RS05910 PF09923 Uncharacterized protein conserved in bacteria (DUF2155) D1093_RS05920 PF00588 SpoU rRNA Methylase family D1093_RS05920 PF08032 RNA 2'-O ribose methyltransferase substrate binding D1093_RS05935 PF00009 Elongation factor Tu GTP binding domain D1093_RS05935 PF03144 Elongation factor Tu domain 2 D1093_RS05935 PF03143 Elongation factor Tu C-terminal domain D1093_RS05945 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D1093_RS05950 PF00467 KOW motif D1093_RS05950 PF02357 Transcription termination factor nusG D1093_RS05955 PF03946 Ribosomal protein L11, N-terminal domain D1093_RS05955 PF00298 Ribosomal protein L11, RNA binding domain D1093_RS05960 PF00687 Ribosomal protein L1p/L10e family D1093_RS05965 PF00466 Ribosomal protein L10 D1093_RS05970 PF16320 Ribosomal protein L7/L12 dimerisation domain D1093_RS05970 PF00542 Ribosomal protein L7/L12 C-terminal domain D1093_RS05975 PF04561 RNA polymerase Rpb2, domain 2 D1093_RS05975 PF04560 RNA polymerase Rpb2, domain 7 D1093_RS05975 PF00562 RNA polymerase Rpb2, domain 6 D1093_RS05975 PF04563 RNA polymerase beta subunit D1093_RS05975 PF10385 RNA polymerase beta subunit external 1 domain D1093_RS05975 PF04565 RNA polymerase Rpb2, domain 3 D1093_RS05980 PF04998 RNA polymerase Rpb1, domain 5 D1093_RS05980 PF05000 RNA polymerase Rpb1, domain 4 D1093_RS05980 PF00623 RNA polymerase Rpb1, domain 2 D1093_RS05980 PF04997 RNA polymerase Rpb1, domain 1 D1093_RS05980 PF04983 RNA polymerase Rpb1, domain 3 D1093_RS05990 PF00881 Nitroreductase family D1093_RS05995 PF03313 Serine dehydratase alpha chain D1093_RS05995 PF03315 Serine dehydratase beta chain D1093_RS06005 PF00768 D-alanyl-D-alanine carboxypeptidase D1093_RS06005 PF07943 Penicillin-binding protein 5, C-terminal domain D1093_RS06010 PF02617 ATP-dependent Clp protease adaptor protein ClpS D1093_RS06015 PF07724 AAA domain (Cdc48 subfamily) D1093_RS06015 PF17871 AAA lid domain D1093_RS06015 PF02861 Clp amino terminal domain, pathogenicity island component D1093_RS06015 PF10431 C-terminal, D2-small domain, of ClpB protein D1093_RS06015 PF00004 ATPase family associated with various cellular activities (AAA) D1093_RS06020 PF01230 HIT domain D1093_RS06035 PF00318 Ribosomal protein S2 D1093_RS06040 PF00889 Elongation factor TS D1093_RS06045 PF00696 Amino acid kinase family D1093_RS06050 PF01765 Ribosome recycling factor D1093_RS06060 PF02163 Peptidase family M50 D1093_RS06060 PF17820 PDZ domain D1093_RS06065 PF07244 Surface antigen variable number repeat D1093_RS06065 PF01103 Surface antigen D1093_RS06070 PF00132 Bacterial transferase hexapeptide (six repeats) D1093_RS06070 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D1093_RS06075 PF07977 FabA-like domain D1093_RS06080 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D1093_RS06080 PF00132 Bacterial transferase hexapeptide (six repeats) D1093_RS06090 PF02684 Lipid-A-disaccharide synthetase D1093_RS06095 PF00005 ABC transporter D1093_RS06100 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS06105 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS06110 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1093_RS06115 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1093_RS06120 PF00285 Citrate synthase, C-terminal domain D1093_RS06125 PF00749 tRNA synthetases class I (E and Q), catalytic domain D1093_RS06130 PF03772 Competence protein D1093_RS06130 PF00753 Metallo-beta-lactamase superfamily D1093_RS06135 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D1093_RS06145 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1093_RS06145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1093_RS06150 PF01474 Class-II DAHP synthetase family D1093_RS06155 PF00795 Carbon-nitrogen hydrolase D1093_RS06155 PF02540 NAD synthase D1093_RS06160 PF00749 tRNA synthetases class I (E and Q), catalytic domain D1093_RS06165 PF00271 Helicase conserved C-terminal domain D1093_RS06165 PF00270 DEAD/DEAH box helicase D1093_RS06170 PF01513 ATP-NAD kinase D1093_RS06210 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB D1093_RS06215 PF01381 Helix-turn-helix D1093_RS06220 PF14659 Phage integrase, N-terminal SAM-like domain D1093_RS06220 PF00589 Phage integrase family D1093_RS06305 PF00436 Single-strand binding protein family D1093_RS06320 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D1093_RS06405 PF07484 Phage Tail Collar Domain D1093_RS06460 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D1093_RS06465 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D1093_RS06470 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D1093_RS06475 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D1093_RS06485 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D1093_RS06485 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D1093_RS06485 PF10531 SLBB domain D1093_RS06490 PF00384 Molybdopterin oxidoreductase D1093_RS06490 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D1093_RS06490 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal D1093_RS06495 PF00146 NADH dehydrogenase D1093_RS06500 PF12838 4Fe-4S dicluster domain D1093_RS06505 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D1093_RS06510 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D1093_RS06515 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D1093_RS06515 PF00361 Proton-conducting membrane transporter D1093_RS06520 PF00361 Proton-conducting membrane transporter D1093_RS06525 PF00361 Proton-conducting membrane transporter D1093_RS06530 PF08279 HTH domain D1093_RS06530 PF02237 Biotin protein ligase C terminal domain D1093_RS06530 PF03099 Biotin/lipoate A/B protein ligase family D1093_RS06535 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D1093_RS06535 PF17770 Ribonuclease J C-terminal domain D1093_RS06535 PF12706 Beta-lactamase superfamily domain D1093_RS06540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1093_RS06540 PF03129 Anticodon binding domain D1093_RS06545 PF02687 FtsX-like permease family D1093_RS06545 PF12704 MacB-like periplasmic core domain D1093_RS06550 PF00005 ABC transporter D1093_RS06555 PF03937 Flavinator of succinate dehydrogenase D1093_RS06560 PF00271 Helicase conserved C-terminal domain D1093_RS06560 PF00270 DEAD/DEAH box helicase D1093_RS06560 PF03461 TRCF domain D1093_RS06560 PF17757 UvrB interaction domain D1093_RS06560 PF02559 CarD-like/TRCF domain D1093_RS06570 PF12111 Polyribonucleotide phosphorylase C terminal D1093_RS06570 PF10150 Ribonuclease E/G family D1093_RS06570 PF00575 S1 RNA binding domain D1093_RS06575 PF01520 N-acetylmuramoyl-L-alanine amidase D1093_RS06575 PF11741 AMIN domain D1093_RS06580 PF00905 Penicillin binding protein transpeptidase domain D1093_RS06580 PF17092 Penicillin-binding protein OB-like domain D1093_RS06580 PF00912 Transglycosylase D1093_RS06590 PF00578 AhpC/TSA family D1093_RS06595 PF00579 tRNA synthetases class I (W and Y) D1093_RS06595 PF01479 S4 domain D1093_RS06600 PF02129 X-Pro dipeptidyl-peptidase (S15 family) D1093_RS06605 PF00266 Aminotransferase class-V D1093_RS06610 PF01458 Uncharacterized protein family (UPF0051) D1093_RS06615 PF00005 ABC transporter D1093_RS06620 PF01458 Uncharacterized protein family (UPF0051) D1093_RS06625 PF00266 Aminotransferase class-V D1093_RS06630 PF01883 Iron-sulfur cluster assembly protein D1093_RS06650 PF00080 Copper/zinc superoxide dismutase (SODC) D1093_RS06665 PF01494 FAD binding domain D1093_RS06670 PF01066 CDP-alcohol phosphatidyltransferase D1093_RS06675 PF00378 Enoyl-CoA hydratase/isomerase D1093_RS06690 PF03099 Biotin/lipoate A/B protein ligase family D1093_RS06690 PF12706 Beta-lactamase superfamily domain D1093_RS06695 PF01026 TatD related DNase D1093_RS06700 PF08264 Anticodon-binding domain of tRNA D1093_RS06700 PF09334 tRNA synthetases class I (M) D1093_RS06705 PF09115 DNA polymerase III, delta subunit, C terminal D1093_RS06710 PF02223 Thymidylate kinase D1093_RS06715 PF00768 D-alanyl-D-alanine carboxypeptidase D1093_RS06715 PF07943 Penicillin-binding protein 5, C-terminal domain D1093_RS06720 PF03330 Lytic transglycolase D1093_RS06720 PF05036 Sporulation related domain D1093_RS06730 PF00717 Peptidase S24-like D1093_RS06730 PF01726 LexA DNA binding domain D1093_RS06735 PF00919 Uncharacterized protein family UPF0004 D1093_RS06735 PF04055 Radical SAM superfamily D1093_RS06735 PF18693 TRAM domain D1093_RS06740 PF01171 PP-loop family D1093_RS06745 PF01479 S4 domain D1093_RS06745 PF00163 Ribosomal protein S4/S9 N-terminal domain D1093_RS06750 PF01177 Asp/Glu/Hydantoin racemase D1093_RS06755 PF00588 SpoU rRNA Methylase family D1093_RS06760 PF03749 Sugar fermentation stimulation protein RE domain D1093_RS06760 PF17746 SfsA N-terminal OB domain D1093_RS06765 PF00557 Metallopeptidase family M24 D1093_RS06770 PF04002 RadC-like JAB domain D1093_RS06780 PF00561 alpha/beta hydrolase fold D1093_RS06790 PF00313 'Cold-shock' DNA-binding domain D1093_RS06800 PF02653 Branched-chain amino acid transport system / permease component D1093_RS06805 PF02653 Branched-chain amino acid transport system / permease component D1093_RS06805 PF11862 Domain of unknown function (DUF3382) D1093_RS06810 PF12399 Branched-chain amino acid ATP-binding cassette transporter D1093_RS06810 PF00005 ABC transporter D1093_RS06815 PF00005 ABC transporter D1093_RS06820 PF01425 Amidase D1093_RS06825 PF02686 Glu-tRNAGln amidotransferase C subunit D1093_RS06830 PF03652 Holliday junction resolvase D1093_RS06840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D1093_RS06840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D1093_RS06845 PF01979 Amidohydrolase family D1093_RS06850 PF02660 Glycerol-3-phosphate acyltransferase D1093_RS06855 PF02481 DNA recombination-mediator protein A D1093_RS06855 PF17782 DprA winged helix domain D1093_RS06865 PF01131 DNA topoisomerase D1093_RS06865 PF13368 Topoisomerase C-terminal repeat D1093_RS06865 PF01751 Toprim domain D1093_RS06865 PF01396 Topoisomerase DNA binding C4 zinc finger D1093_RS06870 PF00773 RNB domain D1093_RS06870 PF00575 S1 RNA binding domain D1093_RS06870 PF08206 Ribonuclease B OB domain D1093_RS06870 PF17876 Cold shock domain D1093_RS06870 PF08461 Ribonuclease R winged-helix domain D1093_RS06880 PF00471 Ribosomal protein L33 D1093_RS06890 PF03167 Uracil DNA glycosylase superfamily D1093_RS06895 PF01037 Lrp/AsnC ligand binding domain D1093_RS06895 PF13404 AsnC-type helix-turn-helix domain D1093_RS06900 PF02277 Phosphoribosyltransferase D1093_RS06905 PF01207 Dihydrouridine synthase (Dus) D1093_RS06915 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D1093_RS06915 PF01266 FAD dependent oxidoreductase D1093_RS06925 PF00364 Biotin-requiring enzyme D1093_RS06930 PF00289 Biotin carboxylase, N-terminal domain D1093_RS06930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D1093_RS06930 PF02785 Biotin carboxylase C-terminal domain D1093_RS06980 PF01227 GTP cyclohydrolase I D1093_RS06990 PF01809 Putative membrane protein insertion efficiency factor D1093_RS06995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1093_RS06995 PF03129 Anticodon binding domain D1093_RS06995 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D1093_RS07000 PF13411 MerR HTH family regulatory protein D1093_RS07005 PF00216 Bacterial DNA-binding protein D1093_RS07010 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D1093_RS07010 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D1093_RS07015 PF02504 Fatty acid synthesis protein D1093_RS07030 PF01029 NusB family D1093_RS07035 PF00885 6,7-dimethyl-8-ribityllumazine synthase D1093_RS07040 PF00677 Lumazine binding domain D1093_RS07045 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1093_RS07045 PF01872 RibD C-terminal domain D1093_RS07050 PF03477 ATP cone domain D1093_RS07055 PF00464 Serine hydroxymethyltransferase D1093_RS07060 PF01118 Semialdehyde dehydrogenase, NAD binding domain D1093_RS07065 PF02628 Cytochrome oxidase assembly protein D1093_RS07075 PF16360 GTP-binding GTPase Middle Region D1093_RS07075 PF01926 50S ribosome-binding GTPase D1093_RS07075 PF13167 GTP-binding GTPase N-terminal D1093_RS07080 PF17209 Hfq protein D1093_RS07090 PF00390 Malic enzyme, N-terminal domain D1093_RS07090 PF03949 Malic enzyme, NAD binding domain D1093_RS07090 PF01515 Phosphate acetyl/butaryl transferase D1093_RS07095 PF00550 Phosphopantetheine attachment site D1093_RS07100 PF00109 Beta-ketoacyl synthase, N-terminal domain D1093_RS07100 PF02801 Beta-ketoacyl synthase, C-terminal domain D1093_RS07105 PF00109 Beta-ketoacyl synthase, N-terminal domain D1093_RS07105 PF02801 Beta-ketoacyl synthase, C-terminal domain D1093_RS07110 PF00107 Zinc-binding dehydrogenase D1093_RS07110 PF08240 Alcohol dehydrogenase GroES-like domain D1093_RS07120 PF03819 MazG nucleotide pyrophosphohydrolase domain D1093_RS07135 PF00011 Hsp20/alpha crystallin family D1093_RS07145 PF00072 Response regulator receiver domain D1093_RS07215 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D1093_RS07215 PF01464 Transglycosylase SLT domain D1093_RS07255 PF05973 Phage derived protein Gp49-like (DUF891) D1093_RS07315 PF13356 Arm DNA-binding domain D1093_RS07315 PF00589 Phage integrase family D1093_RS07330 PF13332 Hemagglutinin repeat D1093_RS07330 PF05594 Haemagluttinin repeat D1093_RS07330 PF05860 haemagglutination activity domain D1093_RS07330 PF15526 Novel toxin 21 D1093_RS07330 PF04829 Pre-toxin domain with VENN motif D1093_RS07340 PF05594 Haemagluttinin repeat D1093_RS07340 PF13332 Hemagglutinin repeat D1093_RS07340 PF04829 Pre-toxin domain with VENN motif D1093_RS07340 PF05860 haemagglutination activity domain D1093_RS07360 PF13332 Hemagglutinin repeat D1093_RS07360 PF04829 Pre-toxin domain with VENN motif D1093_RS07360 PF05594 Haemagluttinin repeat D1093_RS07360 PF05594 Haemagluttinin repeat D1093_RS07360 PF13332 Hemagglutinin repeat D1093_RS07360 PF05860 haemagglutination activity domain D1093_RS07360 PF15526 Novel toxin 21 D1093_RS07360 PF04829 Pre-toxin domain with VENN motif D1093_RS07360 PF05860 haemagglutination activity domain D1093_RS07360 PF15526 Novel toxin 21 D1093_RS07365 PF17287 POTRA domain D1093_RS07365 PF08479 POTRA domain, ShlB-type D1093_RS07365 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB D1093_RS07395 PF08463 EcoEI R protein C-terminal D1093_RS07395 PF00271 Helicase conserved C-terminal domain D1093_RS07395 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D1093_RS07395 PF04851 Type III restriction enzyme, res subunit D1093_RS07415 PF13356 Arm DNA-binding domain D1093_RS07415 PF00589 Phage integrase family D1093_RS07420 PF18836 Beta solenoid repeat from YDCK D1093_RS07425 PF18836 Beta solenoid repeat from YDCK D1093_RS07440 PF01381 Helix-turn-helix D1093_RS07445 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB D1093_RS07475 PF08346 AntA/AntB antirepressor D1093_RS07475 PF10548 P22AR C-terminal domain D1093_RS07485 PF13356 Arm DNA-binding domain D1093_RS07485 PF00589 Phage integrase family D1093_RS07505 PF00271 Helicase conserved C-terminal domain D1093_RS07505 PF08463 EcoEI R protein C-terminal D1093_RS07505 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D1093_RS07505 PF04851 Type III restriction enzyme, res subunit D1093_RS07520 PF18836 Beta solenoid repeat from YDCK D1093_RS07590 PF05973 Phage derived protein Gp49-like (DUF891) D1093_RS07615 PF13356 Arm DNA-binding domain D1093_RS07615 PF00589 Phage integrase family D1093_RS07620 PF13505 Outer membrane protein beta-barrel domain D1093_RS07630 PF12794 Mechanosensitive ion channel inner membrane domain 1 D1093_RS07630 PF12795 Mechanosensitive ion channel porin domain D1093_RS07630 PF00924 Mechanosensitive ion channel D1093_RS07640 PF02355 Protein export membrane protein D1093_RS07640 PF07549 SecD/SecF GG Motif D1093_RS07645 PF00999 Sodium/hydrogen exchanger family D1093_RS07645 PF02254 TrkA-N domain D1093_RS07660 PF03471 Transporter associated domain D1093_RS07660 PF03741 Integral membrane protein TerC family D1093_RS07665 PF01557 Fumarylacetoacetate (FAA) hydrolase family D1093_RS07675 PF00324 Amino acid permease D1093_RS07680 PF00324 Amino acid permease D1093_RS07685 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D1093_RS07685 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D1093_RS07690 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D1093_RS07695 PF14490 Helix-hairpin-helix containing domain D1093_RS07695 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain D1093_RS07695 PF13538 UvrD-like helicase C-terminal domain D1093_RS07715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1093_RS07715 PF00205 Thiamine pyrophosphate enzyme, central domain D1093_RS07715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1093_RS07725 PF13180 PDZ domain D1093_RS07730 PF01145 SPFH domain / Band 7 family D1093_RS07740 PF00186 Dihydrofolate reductase D1093_RS07745 PF00303 Thymidylate synthase D1093_RS07750 PF00083 Sugar (and other) transporter D1093_RS07755 PF00083 Sugar (and other) transporter D1093_RS07760 PF00083 Sugar (and other) transporter D1093_RS07790 PF00580 UvrD/REP helicase N-terminal domain D1093_RS07790 PF13361 UvrD-like helicase C-terminal domain D1093_RS07795 PF00132 Bacterial transferase hexapeptide (six repeats) D1093_RS07800 PF02630 SCO1/SenC D1093_RS07810 PF00557 Metallopeptidase family M24 D1093_RS07810 PF01321 Creatinase/Prolidase N-terminal domain D1093_RS07815 PF00533 BRCA1 C Terminus (BRCT) domain D1093_RS07815 PF03120 NAD-dependent DNA ligase OB-fold domain D1093_RS07815 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D1093_RS07815 PF12826 Helix-hairpin-helix motif D1093_RS07815 PF01653 NAD-dependent DNA ligase adenylation domain D1093_RS07820 PF02463 RecF/RecN/SMC N terminal domain D1093_RS07825 PF13525 Outer membrane lipoprotein D1093_RS07830 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D1093_RS07835 PF00091 Tubulin/FtsZ family, GTPase domain D1093_RS07835 PF12327 FtsZ family, C-terminal domain D1093_RS07840 PF02491 SHS2 domain inserted in FTSA D1093_RS07845 PF03799 Cell division protein FtsQ D1093_RS07845 PF08478 POTRA domain, FtsQ-type D1093_RS07850 PF01820 D-ala D-ala ligase N-terminus D1093_RS07850 PF07478 D-ala D-ala ligase C-terminus D1093_RS07855 PF01565 FAD binding domain D1093_RS07855 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D1093_RS07860 PF01225 Mur ligase family, catalytic domain D1093_RS07860 PF08245 Mur ligase middle domain D1093_RS07860 PF02875 Mur ligase family, glutamate ligase domain D1093_RS07865 PF03033 Glycosyltransferase family 28 N-terminal domain D1093_RS07865 PF04101 Glycosyltransferase family 28 C-terminal domain D1093_RS07870 PF01098 Cell cycle protein D1093_RS07875 PF08245 Mur ligase middle domain D1093_RS07880 PF00953 Glycosyl transferase family 4 D1093_RS07880 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D1093_RS07885 PF02875 Mur ligase family, glutamate ligase domain D1093_RS07885 PF01225 Mur ligase family, catalytic domain D1093_RS07885 PF08245 Mur ligase middle domain D1093_RS07890 PF08245 Mur ligase middle domain D1093_RS07890 PF01225 Mur ligase family, catalytic domain D1093_RS07890 PF02875 Mur ligase family, glutamate ligase domain D1093_RS07895 PF00905 Penicillin binding protein transpeptidase domain D1093_RS07895 PF03717 Penicillin-binding Protein dimerisation domain D1093_RS07905 PF01795 MraW methylase family D1093_RS07930 PF01209 ubiE/COQ5 methyltransferase family D1093_RS07935 PF12848 ABC transporter D1093_RS07935 PF00005 ABC transporter D1093_RS07945 PF00857 Isochorismatase family D1093_RS07990 PF04402 Protein of unknown function (DUF541) D1093_RS07995 PF03692 Putative zinc- or iron-chelating domain D1093_RS08000 PF03979 Sigma-70 factor, region 1.1 D1093_RS08000 PF04542 Sigma-70 region 2 D1093_RS08000 PF04539 Sigma-70 region 3 D1093_RS08000 PF04546 Sigma-70, non-essential region D1093_RS08000 PF04545 Sigma-70, region 4 D1093_RS08000 PF00140 Sigma-70 factor, region 1.2 D1093_RS08005 PF08275 DNA primase catalytic core, N-terminal domain D1093_RS08005 PF10410 DnaB-helicase binding domain of primase D1093_RS08005 PF01807 CHC2 zinc finger D1093_RS08005 PF08278 DNA primase DnaG DnaB-binding D1093_RS08010 PF00924 Mechanosensitive ion channel D1093_RS08015 PF02690 Na+/Pi-cotransporter D1093_RS08025 PF04345 Chorismate lyase D1093_RS08035 PF00117 Glutamine amidotransferase class-I D1093_RS08035 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D1093_RS08040 PF07690 Major Facilitator Superfamily D1093_RS08050 PF16916 Dimerisation domain of Zinc Transporter D1093_RS08050 PF01545 Cation efflux family D1093_RS08055 PF00588 SpoU rRNA Methylase family D1093_RS08075 PF00486 Transcriptional regulatory protein, C terminal D1093_RS08075 PF00072 Response regulator receiver domain D1093_RS08080 PF10090 Histidine phosphotransferase C-terminal domain D1093_RS08100 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D1093_RS08105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D1093_RS08105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D1093_RS08150 PF00005 ABC transporter D1093_RS08150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1093_RS08155 PF00005 ABC transporter D1093_RS08155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1093_RS08160 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS08160 PF12911 N-terminal TM domain of oligopeptide transport permease C D1093_RS08165 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS08170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1093_RS08175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1093_RS08180 PF00958 GMP synthase C terminal domain D1093_RS08180 PF13673 Acetyltransferase (GNAT) domain D1093_RS08180 PF13302 Acetyltransferase (GNAT) domain D1093_RS08180 PF03352 Methyladenine glycosylase D1093_RS08180 PF00117 Glutamine amidotransferase class-I D1093_RS08185 PF02601 Exonuclease VII, large subunit D1093_RS08185 PF13742 OB-fold nucleic acid binding domain D1093_RS08190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1093_RS08195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1093_RS08200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1093_RS08215 PF01925 Sulfite exporter TauE/SafE D1093_RS08225 PF01012 Electron transfer flavoprotein domain D1093_RS08230 PF00766 Electron transfer flavoprotein FAD-binding domain D1093_RS08230 PF01012 Electron transfer flavoprotein domain D1093_RS08240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D1093_RS08245 PF02021 Uncharacterised protein family UPF0102 D1093_RS08260 PF10609 NUBPL iron-transfer P-loop NTPase D1093_RS08260 PF01883 Iron-sulfur cluster assembly protein D1093_RS08265 PF00468 Ribosomal protein L34 D1093_RS08270 PF00825 Ribonuclease P D1093_RS08275 PF14849 YidC periplasmic domain D1093_RS08275 PF02096 60Kd inner membrane protein D1093_RS08280 PF01926 50S ribosome-binding GTPase D1093_RS08285 PF13417 Glutathione S-transferase, N-terminal domain D1093_RS08285 PF00043 Glutathione S-transferase, C-terminal domain D1093_RS08290 PF01113 Dihydrodipicolinate reductase, N-terminus D1093_RS08290 PF05173 Dihydrodipicolinate reductase, C-terminus D1093_RS08295 PF00300 Histidine phosphatase superfamily (branch 1) D1093_RS08325 PF02530 Porin subfamily D1093_RS08340 PF07690 Major Facilitator Superfamily D1093_RS08375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D1093_RS08400 PF07690 Major Facilitator Superfamily D1093_RS08410 PF07690 Major Facilitator Superfamily D1093_RS08455 PF01475 Ferric uptake regulator family D1093_RS08460 PF13533 Biotin-lipoyl like D1093_RS08475 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D1093_RS08475 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D1093_RS08480 PF17773 UPF0176 acylphosphatase like domain D1093_RS08480 PF00581 Rhodanese-like domain D1093_RS08485 PF01081 KDPG and KHG aldolase D1093_RS08495 PF00175 Oxidoreductase NAD-binding domain D1093_RS08495 PF00970 Oxidoreductase FAD-binding domain D1093_RS08500 PF00842 Alanine racemase, C-terminal domain D1093_RS08500 PF01168 Alanine racemase, N-terminal domain D1093_RS08515 PF02347 Glycine cleavage system P-protein D1093_RS08520 PF01597 Glycine cleavage H-protein D1093_RS08525 PF01571 Aminomethyltransferase folate-binding domain D1093_RS08525 PF08669 Glycine cleavage T-protein C-terminal barrel domain D1093_RS08535 PF03966 Trm112p-like protein D1093_RS08540 PF01381 Helix-turn-helix D1093_RS08545 PF02774 Semialdehyde dehydrogenase, dimerisation domain D1093_RS08545 PF01118 Semialdehyde dehydrogenase, NAD binding domain D1093_RS08555 PF03180 NLPA lipoprotein D1093_RS08560 PF00005 ABC transporter D1093_RS08560 PF09383 NIL domain D1093_RS08565 PF00528 Binding-protein-dependent transport system inner membrane component D1093_RS08575 PF01575 MaoC like domain D1093_RS08600 PF02492 CobW/HypB/UreG, nucleotide-binding domain D1093_RS08600 PF07683 Cobalamin synthesis protein cobW C-terminal domain D1093_RS08610 PF03797 Autotransporter beta-domain D1093_RS08610 PF03212 Pertactin D1093_RS08610 PF16168 Adhesin of bacterial autotransporter system, probable stalk D1093_RS08615 PF03212 Pertactin D1093_RS08615 PF16168 Adhesin of bacterial autotransporter system, probable stalk D1093_RS08615 PF03797 Autotransporter beta-domain D1093_RS08620 PF03212 Pertactin D1093_RS08620 PF03797 Autotransporter beta-domain D1093_RS08620 PF16168 Adhesin of bacterial autotransporter system, probable stalk D1093_RS08640 PF03797 Autotransporter beta-domain D1093_RS08645 PF01497 Periplasmic binding protein D1093_RS08650 PF01032 FecCD transport family D1093_RS08655 PF01032 FecCD transport family D1093_RS08660 PF00005 ABC transporter D1093_RS08735 PF02195 ParB-like nuclease domain D1093_RS08765 PF03797 Autotransporter beta-domain D1093_RS08765 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat D1093_RS08765 PF12951 Passenger-associated-transport-repeat D1093_RS08780 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat D1093_RS08780 PF03797 Autotransporter beta-domain D1093_RS08780 PF12951 Passenger-associated-transport-repeat D1093_RS08830 PF13614 AAA domain D1093_RS08845 PF01687 Riboflavin kinase D1093_RS08845 PF06574 FAD synthetase D1093_RS08860 PF01381 Helix-turn-helix D1093_RS08870 PF04956 TrbC/VIRB2 family D1093_RS08875 PF05101 Type IV secretory pathway, VirB3-like protein D1093_RS08880 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D1093_RS08890 PF04610 TrbL/VirB6 plasmid conjugal transfer protein D1093_RS08900 PF04335 VirB8 protein D1093_RS08905 PF03524 Conjugal transfer protein D1093_RS08910 PF03743 Bacterial conjugation TrbI-like protein D1093_RS08915 PF00437 Type II/IV secretion system protein D1093_RS08925 PF02661 Fic/DOC family D1093_RS08925 PF18543 Intracellular delivery domain D1093_RS08930 PF02534 Type IV secretory system Conjugative DNA transfer D1093_RS08940 PF18543 Intracellular delivery domain D1093_RS08940 PF02661 Fic/DOC family D1093_RS08970 PF03023 Lipid II flippase MurJ D1093_RS08975 PF00579 tRNA synthetases class I (W and Y) D1093_RS08985 PF01106 NifU-like domain D1093_RS08990 PF08274 PhnA Zinc-Ribbon D1093_RS08990 PF03831 PhnA domain D1093_RS08995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1093_RS08995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1093_RS08995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1093_RS08995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1093_RS09000 PF08534 Redoxin D1093_RS09010 PF03129 Anticodon binding domain D1093_RS09010 PF13393 Histidyl-tRNA synthetase D1093_RS09015 PF01381 Helix-turn-helix D1093_RS09020 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D1093_RS09080 PF13581 Histidine kinase-like ATPase domain D1093_RS09080 PF13426 PAS domain D1093_RS09080 PF07568 Histidine kinase D1093_RS09085 PF08281 Sigma-70, region 4 D1093_RS09085 PF04542 Sigma-70 region 2 D1093_RS09095 PF00072 Response regulator receiver domain D1093_RS09100 PF07536 HWE histidine kinase D1093_RS09100 PF13426 PAS domain D1093_RS09100 PF08447 PAS fold D1093_RS09185 PF01381 Helix-turn-helix D1093_RS09205 PF01381 Helix-turn-helix D1093_RS09220 PF10431 C-terminal, D2-small domain, of ClpB protein D1093_RS09220 PF02861 Clp amino terminal domain, pathogenicity island component D1093_RS09220 PF17871 AAA lid domain D1093_RS09220 PF07724 AAA domain (Cdc48 subfamily) D1093_RS09220 PF00004 ATPase family associated with various cellular activities (AAA) D1093_RS09230 PF01381 Helix-turn-helix D1093_RS09245 PF01381 Helix-turn-helix D1093_RS09260 PF01381 Helix-turn-helix D1093_RS09265 PF01381 Helix-turn-helix D1093_RS09270 PF01381 Helix-turn-helix D1093_RS09285 PF03884 DNA gyrase inhibitor YacG D1093_RS09290 PF02545 Maf-like protein D1093_RS09295 PF01176 Translation initiation factor 1A / IF-1 D1093_RS09320 PF00731 AIR carboxylase D1093_RS09325 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D1093_RS09325 PF02222 ATP-grasp domain D1093_RS09335 PF00444 Ribosomal protein L36 D1093_RS09360 PF13277 YmdB-like protein D1093_RS09365 PF07690 Major Facilitator Superfamily D1093_RS09375 PF00682 HMGL-like D1093_RS09385 PF03737 Aldolase/RraA D1093_RS09385 PF00180 Isocitrate/isopropylmalate dehydrogenase D1093_RS09405 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D1093_RS09610 PF03421 YopJ Serine/Threonine acetyltransferase D1093_RS09615 PF03421 YopJ Serine/Threonine acetyltransferase D1093_RS09670 PF05732 Firmicute plasmid replication protein (RepL) D1093_RS09700 PF13378 Enolase C-terminal domain-like D1093_RS09700 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D1093_RS09710 PF01820 D-ala D-ala ligase N-terminus D1093_RS09710 PF07478 D-ala D-ala ligase C-terminus D1093_RS09720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D1093_RS09720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D1093_RS09725 PF01565 FAD binding domain D1093_RS09725 PF08031 Berberine and berberine like D1093_RS09735 PF01554 MatE D1093_RS09755 PF01381 Helix-turn-helix D1093_RS09785 PF18821 Large polyvalent protein-associated domain 7 D1093_RS09785 PF03432 Relaxase/Mobilisation nuclease domain D1093_RS09790 PF04335 VirB8 protein D1093_RS09795 PF03524 Conjugal transfer protein D1093_RS09805 PF03743 Bacterial conjugation TrbI-like protein D1093_RS09810 PF02796 Helix-turn-helix domain of resolvase D1093_RS09810 PF00239 Resolvase, N terminal domain D1093_RS09825 PF02534 Type IV secretory system Conjugative DNA transfer D1093_RS09830 PF10502 Signal peptidase, peptidase S26 D1093_RS09840 PF18818 Metallopeptidase superfamily domain D1093_RS09840 PF13362 Toprim domain D1093_RS09840 PF08401 Domain of unknown function (DUF1738) D1093_RS09855 PF00437 Type II/IV secretion system protein D1093_RS09860 PF04956 TrbC/VIRB2 family D1093_RS09870 PF03135 CagE, TrbE, VirB family, component of type IV transporter system