BD_RS00005	SM00382	ATPases associated with a variety of cellular activities
BD_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
BD_RS00010	SM00480	DNA polymerase III beta subunit
BD_RS00020	SM00387	Histidine kinase-like ATPases
BD_RS00020	SM00433	TopoisomeraseII
BD_RS00025	SM00434	DNA Topoisomerase IV
BD_RS00065	SM00422	helix_turn_helix, mercury resistance
BD_RS00100	SM00893	Electron transfer flavoprotein domain
BD_RS00105	SM00893	Electron transfer flavoprotein domain
BD_RS00130	SM00042	Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein.
BD_RS00140	SM00240	Forkhead associated domain
BD_RS00160	SM00020	Trypsin-like serine protease
BD_RS00170	SM00822	BD_RS00170
BD_RS00175	SM00382	ATPases associated with a variety of cellular activities
BD_RS00190	SM00382	ATPases associated with a variety of cellular activities
BD_RS00190	SM00843	BD_RS00190
BD_RS00215	SM01130	BD_RS00215
BD_RS00260	SM00235	Zinc-dependent metalloprotease
BD_RS00265	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BD_RS00265	SM00292	breast cancer carboxy-terminal domain
BD_RS00265	SM00532	Ligase N family
BD_RS00280	SM00845	GatB domain
BD_RS00305	SM00357	Cold shock protein domain
BD_RS00305	SM00382	ATPases associated with a variety of cellular activities
BD_RS00305	SM00959	Rho termination factor, N-terminal domain
BD_RS00320	SM00937	BD_RS00320
BD_RS00350	SM00028	Tetratricopeptide repeats
BD_RS00450	SM00421	helix_turn_helix, Lux Regulon
BD_RS00475	SM00883	Chaperonin 10 Kd subunit
BD_RS00495	SM00448	cheY-homologous receiver domain
BD_RS00535	SM00858	BD_RS00535
BD_RS00570	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS00580	SM00028	Tetratricopeptide repeats
BD_RS00590	SM00028	Tetratricopeptide repeats
BD_RS00640	SM00838	Elongation factor G C-terminus
BD_RS00645	SM00382	ATPases associated with a variety of cellular activities
BD_RS00670	SM00014	Acid phosphatase homologues
BD_RS00730	SM00382	ATPases associated with a variety of cellular activities
BD_RS00740	SM00382	ATPases associated with a variety of cellular activities
BD_RS00750	SM00316	Ribosomal protein S1-like RNA-binding domain
BD_RS00775	SM00382	ATPases associated with a variety of cellular activities
BD_RS00790	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BD_RS00790	SM00245	tail specific protease
BD_RS00865	SM00382	ATPases associated with a variety of cellular activities
BD_RS00880	SM00932	Scaffold protein Nfu/NifU N terminal
BD_RS00935	SM01011	Aminopeptidase P, N-terminal domain
BD_RS00990	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BD_RS00990	SM00387	Histidine kinase-like ATPases
BD_RS00990	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS01030	SM00028	Tetratricopeptide repeats
BD_RS01045	SM00763	PrkA AAA domain
BD_RS01065	SM00448	cheY-homologous receiver domain
BD_RS01065	SM00862	Transcriptional regulatory protein, C terminal
BD_RS01075	SM00487	DEAD-like helicases superfamily
BD_RS01075	SM00490	helicase superfamily c-terminal domain
BD_RS01105	SM00400	zinc finger
BD_RS01105	SM00493	BD_RS01105
BD_RS01145	SM00966	SpoVT / AbrB like domain 
BD_RS01170	SM00342	helix_turn_helix, arabinose operon control protein
BD_RS01170	SM00478	endonuclease III
BD_RS01170	SM01009	AlkA N-terminal domain
BD_RS01175	SM00465	GIY-YIG type nucleases (URI domain)
BD_RS01175	SM00479	BD_RS01175
BD_RS01180	SM00487	DEAD-like helicases superfamily
BD_RS01180	SM00488	BD_RS01180
BD_RS01180	SM00491	BD_RS01180
BD_RS01235	SM01230	BD_RS01235
BD_RS01240	SM00938	Nitrogen regulatory protein P-II
BD_RS01255	SM00957	SecA DEAD-like domain
BD_RS01255	SM00958	SecA preprotein cross-linking domain
BD_RS01300	SM00822	BD_RS01300
BD_RS01375	SM01359	BD_RS01375
BD_RS01375	SM01360	BD_RS01375
BD_RS01390	SM00448	cheY-homologous receiver domain
BD_RS01395	SM00387	Histidine kinase-like ATPases
BD_RS01395	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS01395	SM00448	cheY-homologous receiver domain
BD_RS01420	SM00829	Enoylreductase
BD_RS01425	SM00631	BD_RS01425
BD_RS01470	SM00487	DEAD-like helicases superfamily
BD_RS01470	SM00490	helicase superfamily c-terminal domain
BD_RS01490	SM00360	RNA recognition motif
BD_RS01510	SM00487	DEAD-like helicases superfamily
BD_RS01510	SM00490	helicase superfamily c-terminal domain
BD_RS01590	SM00360	RNA recognition motif
BD_RS01600	SM00382	ATPases associated with a variety of cellular activities
BD_RS01630	SM00563	Phosphate acyltransferases
BD_RS01685	SM00267	diguanylate cyclase
BD_RS01685	SM00448	cheY-homologous receiver domain
BD_RS01715	SM00448	cheY-homologous receiver domain
BD_RS01765	SM00481	DNA polymerase alpha chain like domain
BD_RS01835	SM00331	Sigma factor PP2C-like phosphatases
BD_RS01835	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BD_RS01875	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BD_RS01955	SM00316	Ribosomal protein S1-like RNA-binding domain
BD_RS01955	SM00357	Cold shock protein domain
BD_RS01955	SM00955	BD_RS01955
BD_RS01970	SM00448	cheY-homologous receiver domain
BD_RS01970	SM00862	Transcriptional regulatory protein, C terminal
BD_RS02000	SM00752	Horizontally Transferred TransMembrane Domain
BD_RS02035	SM00382	ATPases associated with a variety of cellular activities
BD_RS02045	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS02045	SM00419	helix_turn_helix, cAMP Regulatory protein
BD_RS02055	SM00155	Phospholipase D. Active site motifs.
BD_RS02125	SM01152	BD_RS02125
BD_RS02170	SM00240	Forkhead associated domain
BD_RS02175	SM00240	Forkhead associated domain
BD_RS02180	SM00240	Forkhead associated domain
BD_RS02225	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BD_RS02245	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS02290	SM00387	Histidine kinase-like ATPases
BD_RS02290	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS02290	SM00448	cheY-homologous receiver domain
BD_RS02300	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BD_RS02320	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS02335	SM01006	Siderophore biosynthesis protein domain
BD_RS02350	SM00382	ATPases associated with a variety of cellular activities
BD_RS02560	SM00331	Sigma factor PP2C-like phosphatases
BD_RS02570	SM00020	Trypsin-like serine protease
BD_RS02590	SM00448	cheY-homologous receiver domain
BD_RS02590	SM00862	Transcriptional regulatory protein, C terminal
BD_RS02630	SM00073	Histidine Phosphotransfer domain
BD_RS02630	SM00260	Two component signalling adaptor domain
BD_RS02630	SM00387	Histidine kinase-like ATPases
BD_RS02635	SM00260	Two component signalling adaptor domain
BD_RS02640	SM00448	cheY-homologous receiver domain
BD_RS02660	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BD_RS02660	SM00387	Histidine kinase-like ATPases
BD_RS02660	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS02660	SM00448	cheY-homologous receiver domain
BD_RS02690	SM00478	endonuclease III
BD_RS02690	SM00525	BD_RS02690
BD_RS02710	SM00382	ATPases associated with a variety of cellular activities
BD_RS02715	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BD_RS02715	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BD_RS02715	SM00387	Histidine kinase-like ATPases
BD_RS02715	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS02715	SM00448	cheY-homologous receiver domain
BD_RS02755	SM01321	BD_RS02755
BD_RS02800	SM00028	Tetratricopeptide repeats
BD_RS02825	SM00387	Histidine kinase-like ATPases
BD_RS02825	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS02830	SM00448	cheY-homologous receiver domain
BD_RS02865	SM00020	Trypsin-like serine protease
BD_RS02905	SM00650	Ribosomal RNA adenine dimethylases
BD_RS02955	SM00347	helix_turn_helix multiple antibiotic resistance protein
BD_RS03025	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS03050	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS03090	SM00271	DnaJ molecular chaperone homology domain
BD_RS03150	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS03240	SM00020	Trypsin-like serine protease
BD_RS03255	SM00382	ATPases associated with a variety of cellular activities
BD_RS03265	SM00411	bacterial (prokaryotic) histone like domain
BD_RS03290	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BD_RS03325	SM00530	Helix-turn-helix XRE-family like proteins 
BD_RS03345	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS03365	SM00729	Elongator protein 3, MiaB family, Radical SAM
BD_RS03405	SM00240	Forkhead associated domain
BD_RS03405	SM00267	diguanylate cyclase
BD_RS03495	SM00670	Large family of predicted nucleotide-binding domains
BD_RS03505	SM01034	Sensors of blue-light using FAD
BD_RS03555	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS03620	SM00382	ATPases associated with a variety of cellular activities
BD_RS03630	SM01192	BD_RS03630
BD_RS03630	SM01193	BD_RS03630
BD_RS03640	SM01060	BD_RS03640
BD_RS03645	SM00248	ankyrin repeats
BD_RS03660	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BD_RS03660	SM00475	5'-3' exonuclease
BD_RS03660	SM00482	DNA polymerase A domain
BD_RS03675	SM00240	Forkhead associated domain
BD_RS03675	SM00382	ATPases associated with a variety of cellular activities
BD_RS03695	SM00116	Domain in cystathionine beta-synthase and other proteins.
BD_RS03705	SM00871	Bacterial transcription activator, effector binding domain
BD_RS03710	SM00226	Low molecular weight phosphatase family
BD_RS03765	SM00382	ATPases associated with a variety of cellular activities
BD_RS03775	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS03775	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BD_RS03805	SM00028	Tetratricopeptide repeats
BD_RS03810	SM00028	Tetratricopeptide repeats
BD_RS03820	SM00240	Forkhead associated domain
BD_RS03845	SM00382	ATPases associated with a variety of cellular activities
BD_RS03855	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS03890	SM00838	Elongation factor G C-terminus
BD_RS03915	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
BD_RS03925	SM00851	MGS-like domain
BD_RS03925	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BD_RS03930	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS03935	SM00382	ATPases associated with a variety of cellular activities
BD_RS03950	SM00842	Cell division protein FtsA
BD_RS03970	SM00965	Secretin and TonB N terminus short domain
BD_RS03985	SM00382	ATPases associated with a variety of cellular activities
BD_RS04140	SM00829	Enoylreductase
BD_RS04150	SM00829	Enoylreductase
BD_RS04225	SM00382	ATPases associated with a variety of cellular activities
BD_RS04240	SM00450	Rhodanese Homology Domain
BD_RS04250	SM00116	Domain in cystathionine beta-synthase and other proteins.
BD_RS04255	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BD_RS04265	SM00830	Chorismate mutase type II
BD_RS04295	SM00422	helix_turn_helix, mercury resistance
BD_RS04300	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS04350	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BD_RS04375	SM00981	BD_RS04375
BD_RS04410	SM00316	Ribosomal protein S1-like RNA-binding domain
BD_RS04410	SM00732	Likely ribonuclease with RNase H fold.
BD_RS04435	SM00769	Water Stress and Hypersensitive response
BD_RS04450	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BD_RS04450	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BD_RS04450	SM00493	BD_RS04450
BD_RS04460	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BD_RS04460	SM00245	tail specific protease
BD_RS04480	SM00861	Transketolase, pyrimidine binding domain
BD_RS04540	SM00838	Elongation factor G C-terminus
BD_RS04540	SM00889	Elongation factor G, domain IV
BD_RS04545	SM00487	DEAD-like helicases superfamily
BD_RS04545	SM00490	helicase superfamily c-terminal domain
BD_RS04580	SM00382	ATPases associated with a variety of cellular activities
BD_RS04615	SM00422	helix_turn_helix, mercury resistance
BD_RS04630	SM00867	YceI-like domain 
BD_RS04655	SM00855	Phosphoglycerate mutase family
BD_RS04665	SM01321	BD_RS04665
BD_RS04685	SM00448	cheY-homologous receiver domain
BD_RS04685	SM00862	Transcriptional regulatory protein, C terminal
BD_RS04690	SM00387	Histidine kinase-like ATPases
BD_RS04690	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS04710	SM00382	ATPases associated with a variety of cellular activities
BD_RS04790	SM00382	ATPases associated with a variety of cellular activities
BD_RS04800	SM00020	Trypsin-like serine protease
BD_RS04825	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BD_RS04905	SM00316	Ribosomal protein S1-like RNA-binding domain
BD_RS04925	SM01160	BD_RS04925
BD_RS04975	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS05095	SM00382	ATPases associated with a variety of cellular activities
BD_RS05120	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
BD_RS05120	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BD_RS05160	SM00028	Tetratricopeptide repeats
BD_RS05165	SM00257	Lysin motif
BD_RS05170	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS05210	SM00042	Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein.
BD_RS05225	SM00710	Parallel beta-helix repeats
BD_RS05275	SM01060	BD_RS05275
BD_RS05280	SM00248	ankyrin repeats
BD_RS05290	SM00968	SMC proteins Flexible Hinge Domain
BD_RS05335	SM00240	Forkhead associated domain
BD_RS05350	SM00530	Helix-turn-helix XRE-family like proteins 
BD_RS05355	SM00382	ATPases associated with a variety of cellular activities
BD_RS05355	SM00962	SRP54-type protein, GTPase domain
BD_RS05355	SM00963	SRP54-type protein, helical bundle domain
BD_RS05415	SM00322	K homology RNA-binding domain
BD_RS05420	SM00363	S4 RNA-binding domain
BD_RS05455	SM00316	Ribosomal protein S1-like RNA-binding domain
BD_RS05485	SM01301	BD_RS05485
BD_RS05565	SM00382	ATPases associated with a variety of cellular activities
BD_RS05575	SM00632	BD_RS05575
BD_RS05575	SM00642	Alpha-amylase domain
BD_RS05580	SM00382	ATPases associated with a variety of cellular activities
BD_RS05645	SM00245	tail specific protease
BD_RS05705	SM00155	Phospholipase D. Active site motifs.
BD_RS05710	SM00387	Histidine kinase-like ATPases
BD_RS05735	SM01329	BD_RS05735
BD_RS05750	SM00421	helix_turn_helix, Lux Regulon
BD_RS05800	SM00463	Small MutS-related domain
BD_RS05800	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BD_RS05800	SM00534	ATPase domain of DNA mismatch repair MUTS family
BD_RS05845	SM00382	ATPases associated with a variety of cellular activities
BD_RS05845	SM01086	C-terminal, D2-small domain, of ClpB protein
BD_RS05870	SM00530	Helix-turn-helix XRE-family like proteins 
BD_RS05880	SM00271	DnaJ molecular chaperone homology domain
BD_RS05890	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS05890	SM00419	helix_turn_helix, cAMP Regulatory protein
BD_RS05895	SM00849	Metallo-beta-lactamase superfamily
BD_RS05900	SM00450	Rhodanese Homology Domain
BD_RS06040	SM00382	ATPases associated with a variety of cellular activities
BD_RS06055	SM00387	Histidine kinase-like ATPases
BD_RS06065	SM00151	SWI complex, BAF60b domains
BD_RS06075	SM00996	S-adenosyl-L-homocysteine hydrolase
BD_RS06075	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
BD_RS06080	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS06100	SM00479	BD_RS06100
BD_RS06105	SM00448	cheY-homologous receiver domain
BD_RS06120	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS06170	SM00020	Trypsin-like serine protease
BD_RS06225	SM00487	DEAD-like helicases superfamily
BD_RS06225	SM00490	helicase superfamily c-terminal domain
BD_RS06235	SM01011	Aminopeptidase P, N-terminal domain
BD_RS06270	SM00028	Tetratricopeptide repeats
BD_RS06275	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BD_RS06275	SM00091	PAS domain
BD_RS06275	SM00387	Histidine kinase-like ATPases
BD_RS06275	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS06275	SM00448	cheY-homologous receiver domain
BD_RS06280	SM00387	Histidine kinase-like ATPases
BD_RS06280	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS06280	SM00448	cheY-homologous receiver domain
BD_RS06290	SM01322	BD_RS06290
BD_RS06310	SM01144	BD_RS06310
BD_RS06320	SM00020	Trypsin-like serine protease
BD_RS06335	SM00487	DEAD-like helicases superfamily
BD_RS06335	SM00490	helicase superfamily c-terminal domain
BD_RS06340	SM00316	Ribosomal protein S1-like RNA-binding domain
BD_RS06345	SM00360	RNA recognition motif
BD_RS06415	SM00487	DEAD-like helicases superfamily
BD_RS06415	SM00490	helicase superfamily c-terminal domain
BD_RS06425	SM00382	ATPases associated with a variety of cellular activities
BD_RS06445	SM00382	ATPases associated with a variety of cellular activities
BD_RS06475	SM00347	helix_turn_helix multiple antibiotic resistance protein
BD_RS06480	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BD_RS06485	SM00645	Papain family cysteine protease
BD_RS06490	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS06500	SM00318	Staphylococcal nuclease homologues
BD_RS06510	SM00267	diguanylate cyclase
BD_RS06570	SM00060	Fibronectin type 3 domain
BD_RS06570	SM00237	Domains in Na-Ca exchangers and integrin-beta4
BD_RS06575	SM00347	helix_turn_helix multiple antibiotic resistance protein
BD_RS06605	SM01022	BD_RS06605
BD_RS06630	SM00788	Adenylosuccinate synthetase
BD_RS06670	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS06675	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS06740	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BD_RS06750	SM00937	BD_RS06750
BD_RS06760	SM00382	ATPases associated with a variety of cellular activities
BD_RS06770	SM00935	Outer membrane protein (OmpH-like)
BD_RS06820	SM00382	ATPases associated with a variety of cellular activities
BD_RS06820	SM00448	cheY-homologous receiver domain
BD_RS06825	SM00387	Histidine kinase-like ATPases
BD_RS06825	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS06825	SM01080	BD_RS06825
BD_RS06830	SM00904	Riboflavin kinase
BD_RS06855	SM00091	PAS domain
BD_RS06855	SM00387	Histidine kinase-like ATPases
BD_RS06855	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS06860	SM00382	ATPases associated with a variety of cellular activities
BD_RS06860	SM00448	cheY-homologous receiver domain
BD_RS06875	SM00155	Phospholipase D. Active site motifs.
BD_RS06905	SM00382	ATPases associated with a variety of cellular activities
BD_RS06935	SM00382	ATPases associated with a variety of cellular activities
BD_RS06965	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BD_RS06965	SM00091	PAS domain
BD_RS06965	SM00387	Histidine kinase-like ATPases
BD_RS06965	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS06965	SM00448	cheY-homologous receiver domain
BD_RS07000	SM00020	Trypsin-like serine protease
BD_RS07025	SM00316	Ribosomal protein S1-like RNA-binding domain
BD_RS07025	SM00322	K homology RNA-binding domain
BD_RS07045	SM01387	BD_RS07045
BD_RS07050	SM00316	Ribosomal protein S1-like RNA-binding domain
BD_RS07050	SM00322	K homology RNA-binding domain
BD_RS07110	SM00853	MutL C terminal dimerisation domain
BD_RS07110	SM01340	BD_RS07110
BD_RS07125	SM00072	Guanylate kinase homologues.
BD_RS07130	SM01409	BD_RS07130
BD_RS07135	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BD_RS07135	SM00954	Region found in RelA / SpoT proteins
BD_RS07140	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BD_RS07140	SM00091	PAS domain
BD_RS07140	SM00387	Histidine kinase-like ATPases
BD_RS07140	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS07140	SM01079	BD_RS07140
BD_RS07160	SM01006	Siderophore biosynthesis protein domain
BD_RS07260	SM00382	ATPases associated with a variety of cellular activities
BD_RS07360	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BD_RS07385	SM00042	Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein.
BD_RS07440	SM00862	Transcriptional regulatory protein, C terminal
BD_RS07455	SM00873	B3/4 domain
BD_RS07455	SM00874	tRNA synthetase B5 domain
BD_RS07455	SM00896	Ferredoxin-fold anticodon binding domain
BD_RS07460	SM00411	bacterial (prokaryotic) histone like domain
BD_RS07465	SM00422	helix_turn_helix, mercury resistance
BD_RS07535	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BD_RS07535	SM00387	Histidine kinase-like ATPases
BD_RS07535	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS07555	SM00382	ATPases associated with a variety of cellular activities
BD_RS07580	SM00487	DEAD-like helicases superfamily
BD_RS07580	SM00490	helicase superfamily c-terminal domain
BD_RS07670	SM00116	Domain in cystathionine beta-synthase and other proteins.
BD_RS07770	SM00530	Helix-turn-helix XRE-family like proteins 
BD_RS07880	SM00382	ATPases associated with a variety of cellular activities
BD_RS07910	SM00947	Carbonic anhydrase
BD_RS07975	SM00530	Helix-turn-helix XRE-family like proteins 
BD_RS08020	SM00387	Histidine kinase-like ATPases
BD_RS08025	SM00448	cheY-homologous receiver domain
BD_RS08025	SM00862	Transcriptional regulatory protein, C terminal
BD_RS08080	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS08110	SM01240	BD_RS08110
BD_RS08140	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS08145	SM00248	ankyrin repeats
BD_RS08285	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BD_RS08320	SM00448	cheY-homologous receiver domain
BD_RS08325	SM00421	helix_turn_helix, Lux Regulon
BD_RS08335	SM00387	Histidine kinase-like ATPases
BD_RS08335	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS08335	SM00448	cheY-homologous receiver domain
BD_RS08410	SM00563	Phosphate acyltransferases
BD_RS08440	SM00387	Histidine kinase-like ATPases
BD_RS08440	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS08485	SM00899	BD_RS08485
BD_RS08530	SM00382	ATPases associated with a variety of cellular activities
BD_RS08535	SM00382	ATPases associated with a variety of cellular activities
BD_RS08605	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BD_RS08605	SM00382	ATPases associated with a variety of cellular activities
BD_RS08635	SM00020	Trypsin-like serine protease
BD_RS08770	SM00382	ATPases associated with a variety of cellular activities
BD_RS08800	SM00318	Staphylococcal nuclease homologues
BD_RS08830	SM00729	Elongator protein 3, MiaB family, Radical SAM
BD_RS08835	SM00358	Double-stranded RNA binding motif
BD_RS08835	SM00535	Ribonuclease III family
BD_RS08870	SM00998	Adenylosuccinate lyase C-terminus
BD_RS08890	SM01321	BD_RS08890
BD_RS08895	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BD_RS08895	SM00534	ATPase domain of DNA mismatch repair MUTS family
BD_RS08960	SM00363	S4 RNA-binding domain
BD_RS08980	SM00052	Putative diguanylate phosphodiesterase
BD_RS08980	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS09015	SM00752	Horizontally Transferred TransMembrane Domain
BD_RS09045	SM00729	Elongator protein 3, MiaB family, Radical SAM
BD_RS09115	SM00867	YceI-like domain 
BD_RS09160	SM00825	Beta-ketoacyl synthase
BD_RS09170	SM00822	BD_RS09170
BD_RS09175	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BD_RS09220	SM00382	ATPases associated with a variety of cellular activities
BD_RS09245	SM00836	DALR anticodon binding domain
BD_RS09245	SM01016	Arginyl tRNA synthetase N terminal dom
BD_RS09250	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BD_RS09260	SM00564	beta-propeller repeat
BD_RS09285	SM00849	Metallo-beta-lactamase superfamily
BD_RS09285	SM01027	Beta-Casp domain
BD_RS09365	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BD_RS09490	SM00481	DNA polymerase alpha chain like domain
BD_RS09505	SM00116	Domain in cystathionine beta-synthase and other proteins.
BD_RS09505	SM01240	BD_RS09505
BD_RS09530	SM00729	Elongator protein 3, MiaB family, Radical SAM
BD_RS09570	SM00882	Coenzyme A transferase
BD_RS09575	SM00882	Coenzyme A transferase
BD_RS09580	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS09610	SM00411	bacterial (prokaryotic) histone like domain
BD_RS09625	SM00756	BD_RS09625
BD_RS09695	SM00382	ATPases associated with a variety of cellular activities
BD_RS09695	SM00962	SRP54-type protein, GTPase domain
BD_RS09695	SM00963	SRP54-type protein, helical bundle domain
BD_RS09720	SM00382	ATPases associated with a variety of cellular activities
BD_RS09730	SM00450	Rhodanese Homology Domain
BD_RS09775	SM00421	helix_turn_helix, Lux Regulon
BD_RS09775	SM00448	cheY-homologous receiver domain
BD_RS09780	SM00479	BD_RS09780
BD_RS09785	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS09790	SM00387	Histidine kinase-like ATPases
BD_RS09795	SM00448	cheY-homologous receiver domain
BD_RS09800	SM00382	ATPases associated with a variety of cellular activities
BD_RS09800	SM00464	Found in ATP-dependent protease La (LON)
BD_RS09845	SM00421	helix_turn_helix, Lux Regulon
BD_RS09910	SM00448	cheY-homologous receiver domain
BD_RS09920	SM00116	Domain in cystathionine beta-synthase and other proteins.
BD_RS09950	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BD_RS09950	SM01232	BD_RS09950
BD_RS09985	SM00387	Histidine kinase-like ATPases
BD_RS10005	SM00382	ATPases associated with a variety of cellular activities
BD_RS10010	SM00382	ATPases associated with a variety of cellular activities
BD_RS10075	SM00849	Metallo-beta-lactamase superfamily
BD_RS10130	SM00464	Found in ATP-dependent protease La (LON)
BD_RS10215	SM01323	BD_RS10215
BD_RS10275	SM00749	bacterial OsmY and nodulation domain
BD_RS10290	SM00749	bacterial OsmY and nodulation domain
BD_RS10305	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
BD_RS10330	SM00947	Carbonic anhydrase
BD_RS10420	SM00642	Alpha-amylase domain
BD_RS10515	SM00382	ATPases associated with a variety of cellular activities
BD_RS10540	SM00244	prohibitin homologues
BD_RS10575	SM00465	GIY-YIG type nucleases (URI domain)
BD_RS10580	SM00487	DEAD-like helicases superfamily
BD_RS10580	SM00490	helicase superfamily c-terminal domain
BD_RS10600	SM00840	BD_RS10600
BD_RS10610	SM01058	CarD-like/TRCF domain
BD_RS10630	SM00487	DEAD-like helicases superfamily
BD_RS10630	SM00490	helicase superfamily c-terminal domain
BD_RS10635	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BD_RS10665	SM00020	Trypsin-like serine protease
BD_RS10675	SM00020	Trypsin-like serine protease
BD_RS10680	SM00387	Histidine kinase-like ATPases
BD_RS10680	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS10680	SM00448	cheY-homologous receiver domain
BD_RS10690	SM00450	Rhodanese Homology Domain
BD_RS10700	SM01133	BD_RS10700
BD_RS10705	SM00932	Scaffold protein Nfu/NifU N terminal
BD_RS10865	SM00028	Tetratricopeptide repeats
BD_RS10940	SM00155	Phospholipase D. Active site motifs.
BD_RS10990	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
BD_RS10995	SM00448	cheY-homologous receiver domain
BD_RS11005	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BD_RS11005	SM00331	Sigma factor PP2C-like phosphatases
BD_RS11015	SM00073	Histidine Phosphotransfer domain
BD_RS11015	SM00091	PAS domain
BD_RS11015	SM00387	Histidine kinase-like ATPases
BD_RS11025	SM00530	Helix-turn-helix XRE-family like proteins 
BD_RS11030	SM00448	cheY-homologous receiver domain
BD_RS11075	SM01150	BD_RS11075
BD_RS11080	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BD_RS11125	SM00014	Acid phosphatase homologues
BD_RS11130	SM00014	Acid phosphatase homologues
BD_RS11295	SM00257	Lysin motif
BD_RS11320	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BD_RS11320	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BD_RS11355	SM00382	ATPases associated with a variety of cellular activities
BD_RS11360	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BD_RS11370	SM00028	Tetratricopeptide repeats
BD_RS11375	SM00841	Elongation factor P, C-terminal
BD_RS11375	SM01185	BD_RS11375
BD_RS11400	SM00530	Helix-turn-helix XRE-family like proteins 
BD_RS11425	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS11430	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS11535	SM00867	YceI-like domain 
BD_RS11575	SM00020	Trypsin-like serine protease
BD_RS11600	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
BD_RS11605	SM00382	ATPases associated with a variety of cellular activities
BD_RS11610	SM00382	ATPases associated with a variety of cellular activities
BD_RS11615	SM00116	Domain in cystathionine beta-synthase and other proteins.
BD_RS11615	SM00924	MgtE intracellular N domain
BD_RS11735	SM00450	Rhodanese Homology Domain
BD_RS11760	SM00448	cheY-homologous receiver domain
BD_RS11760	SM00862	Transcriptional regulatory protein, C terminal
BD_RS11765	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BD_RS11765	SM00387	Histidine kinase-like ATPases
BD_RS11765	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS11795	SM00382	ATPases associated with a variety of cellular activities
BD_RS11800	SM00091	PAS domain
BD_RS11800	SM00387	Histidine kinase-like ATPases
BD_RS11800	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS11830	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS11830	SM00419	helix_turn_helix, cAMP Regulatory protein
BD_RS11835	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS11835	SM00419	helix_turn_helix, cAMP Regulatory protein
BD_RS11855	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS11860	SM00327	von Willebrand factor (vWF) type A domain
BD_RS11880	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS11880	SM00419	helix_turn_helix, cAMP Regulatory protein
BD_RS11970	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS12010	SM00020	Trypsin-like serine protease
BD_RS12025	SM01092	CO dehydrogenase flavoprotein C-terminal domain
BD_RS12030	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BD_RS12060	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
BD_RS12060	SM01080	BD_RS12060
BD_RS12110	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS12150	SM00448	cheY-homologous receiver domain
BD_RS12180	SM00382	ATPases associated with a variety of cellular activities
BD_RS12200	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BD_RS12225	SM00244	prohibitin homologues
BD_RS12310	SM00635	Bacterial Ig-like domain 2
BD_RS12340	SM00646	BD_RS12340
BD_RS12370	SM01400	BD_RS12370
BD_RS12410	SM00382	ATPases associated with a variety of cellular activities
BD_RS12415	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS12440	SM00563	Phosphate acyltransferases
BD_RS12485	SM00855	Phosphoglycerate mutase family
BD_RS12490	SM00861	Transketolase, pyrimidine binding domain
BD_RS12565	SM00382	ATPases associated with a variety of cellular activities
BD_RS12640	SM00871	Bacterial transcription activator, effector binding domain
BD_RS12720	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS12740	SM00530	Helix-turn-helix XRE-family like proteins 
BD_RS12770	SM00028	Tetratricopeptide repeats
BD_RS12775	SM00327	von Willebrand factor (vWF) type A domain
BD_RS12780	SM00327	von Willebrand factor (vWF) type A domain
BD_RS12810	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BD_RS12845	SM00028	Tetratricopeptide repeats
BD_RS12870	SM00829	Enoylreductase
BD_RS12940	SM00260	Two component signalling adaptor domain
BD_RS12950	SM00138	Methyltransferase, chemotaxis proteins 
BD_RS12955	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BD_RS12955	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS12965	SM00387	Histidine kinase-like ATPases
BD_RS12970	SM00919	Malic enzyme, NAD binding domain
BD_RS12970	SM01274	BD_RS12970
BD_RS12980	SM00867	YceI-like domain 
BD_RS12985	SM00421	helix_turn_helix, Lux Regulon
BD_RS12985	SM00448	cheY-homologous receiver domain
BD_RS12990	SM00091	PAS domain
BD_RS12990	SM00387	Histidine kinase-like ATPases
BD_RS13010	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BD_RS13010	SM00387	Histidine kinase-like ATPases
BD_RS13010	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS13010	SM00448	cheY-homologous receiver domain
BD_RS13020	SM00854	Bacterial capsule synthesis protein PGA_cap
BD_RS13040	SM00387	Histidine kinase-like ATPases
BD_RS13040	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS13040	SM00448	cheY-homologous receiver domain
BD_RS13040	SM01079	BD_RS13040
BD_RS13065	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS13130	SM00564	beta-propeller repeat
BD_RS13175	SM00507	HNH nucleases
BD_RS13195	SM00116	Domain in cystathionine beta-synthase and other proteins.
BD_RS13225	SM00060	Fibronectin type 3 domain
BD_RS13235	SM00382	ATPases associated with a variety of cellular activities
BD_RS13235	SM00448	cheY-homologous receiver domain
BD_RS13245	SM00563	Phosphate acyltransferases
BD_RS13250	SM00849	Metallo-beta-lactamase superfamily
BD_RS13335	SM00534	ATPase domain of DNA mismatch repair MUTS family
BD_RS13355	SM00342	helix_turn_helix, arabinose operon control protein
BD_RS13390	SM00020	Trypsin-like serine protease
BD_RS13440	SM00752	Horizontally Transferred TransMembrane Domain
BD_RS13445	SM00752	Horizontally Transferred TransMembrane Domain
BD_RS13505	SM00662	RNA polymerases D
BD_RS13510	SM00363	S4 RNA-binding domain
BD_RS13510	SM01390	BD_RS13510
BD_RS13575	SM01374	BD_RS13575
BD_RS13595	SM00322	K homology RNA-binding domain
BD_RS13610	SM01382	BD_RS13610
BD_RS13610	SM01383	BD_RS13610
BD_RS13630	SM01403	BD_RS13630
BD_RS13635	SM00838	Elongation factor G C-terminus
BD_RS13635	SM00889	Elongation factor G, domain IV
BD_RS13650	SM00663	RNA polymerase I subunit A N-terminus
BD_RS13680	SM00649	Ribosomal protein L11/L12
BD_RS13685	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BD_RS13685	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BD_RS13725	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BD_RS13730	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BD_RS13760	SM00798	AICARFT/IMPCHase bienzyme
BD_RS13760	SM00851	MGS-like domain
BD_RS13765	SM01211	BD_RS13765
BD_RS13780	SM01209	BD_RS13780
BD_RS13780	SM01210	BD_RS13780
BD_RS13790	SM01001	AIR carboxylase
BD_RS13815	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BD_RS13815	SM00331	Sigma factor PP2C-like phosphatases
BD_RS13835	SM00028	Tetratricopeptide repeats
BD_RS13865	SM00327	von Willebrand factor (vWF) type A domain
BD_RS13880	SM00191	Integrin alpha (beta-propellor repeats).
BD_RS13885	SM00060	Fibronectin type 3 domain
BD_RS13885	SM00191	Integrin alpha (beta-propellor repeats).
BD_RS13910	SM00946	Prolyl-tRNA synthetase, C-terminal
BD_RS13915	SM00382	ATPases associated with a variety of cellular activities
BD_RS13915	SM00448	cheY-homologous receiver domain
BD_RS13920	SM00091	PAS domain
BD_RS13920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BD_RS13920	SM00387	Histidine kinase-like ATPases
BD_RS13920	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS13960	SM00854	Bacterial capsule synthesis protein PGA_cap
BD_RS13965	SM00851	MGS-like domain
BD_RS13970	SM00382	ATPases associated with a variety of cellular activities
BD_RS13970	SM01086	C-terminal, D2-small domain, of ClpB protein
BD_RS14000	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS14005	SM00347	helix_turn_helix multiple antibiotic resistance protein
BD_RS14035	SM00382	ATPases associated with a variety of cellular activities
BD_RS14080	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
BD_RS14120	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BD_RS14120	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BD_RS14125	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BD_RS14150	SM00867	YceI-like domain 
BD_RS14165	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS14165	SM01049	BD_RS14165
BD_RS14185	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BD_RS14195	SM00382	ATPases associated with a variety of cellular activities
BD_RS14225	SM00382	ATPases associated with a variety of cellular activities
BD_RS14245	SM00487	DEAD-like helicases superfamily
BD_RS14245	SM00490	helicase superfamily c-terminal domain
BD_RS14245	SM00847	Helicase associated domain (HA2)  Add an annotation
BD_RS14260	SM00363	S4 RNA-binding domain
BD_RS14260	SM01390	BD_RS14260
BD_RS14285	SM00028	Tetratricopeptide repeats
BD_RS14295	SM00382	ATPases associated with a variety of cellular activities
BD_RS14305	SM01005	Alanine racemase, C-terminal domain
BD_RS14310	SM00267	diguanylate cyclase
BD_RS14315	SM00387	Histidine kinase-like ATPases
BD_RS14315	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS14485	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BD_RS14500	SM00382	ATPases associated with a variety of cellular activities
BD_RS14555	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS14610	SM00864	Tubulin/FtsZ family, GTPase domain
BD_RS14610	SM00865	Tubulin/FtsZ family, C-terminal domain
BD_RS14615	SM00842	Cell division protein FtsA
BD_RS14625	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS14675	SM00116	Domain in cystathionine beta-synthase and other proteins.
BD_RS14700	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS14710	SM00341	Helicase and RNase D C-terminal
BD_RS14710	SM00487	DEAD-like helicases superfamily
BD_RS14710	SM00490	helicase superfamily c-terminal domain
BD_RS14810	SM00631	BD_RS14810
BD_RS14885	SM00479	BD_RS14885
BD_RS14910	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS14940	SM00363	S4 RNA-binding domain
BD_RS15130	SM00387	Histidine kinase-like ATPases
BD_RS15130	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS15130	SM00448	cheY-homologous receiver domain
BD_RS15140	SM00382	ATPases associated with a variety of cellular activities
BD_RS15195	SM00382	ATPases associated with a variety of cellular activities
BD_RS15195	SM00962	SRP54-type protein, GTPase domain
BD_RS15295	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS15345	SM00849	Metallo-beta-lactamase superfamily
BD_RS15370	SM00387	Histidine kinase-like ATPases
BD_RS15370	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS15370	SM01080	BD_RS15370
BD_RS15375	SM00382	ATPases associated with a variety of cellular activities
BD_RS15375	SM00448	cheY-homologous receiver domain
BD_RS15395	SM00448	cheY-homologous receiver domain
BD_RS15400	SM00387	Histidine kinase-like ATPases
BD_RS15425	SM00382	ATPases associated with a variety of cellular activities
BD_RS15435	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS15465	SM00411	bacterial (prokaryotic) histone like domain
BD_RS15490	SM00382	ATPases associated with a variety of cellular activities
BD_RS15495	SM00382	ATPases associated with a variety of cellular activities
BD_RS15515	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BD_RS15515	SM00387	Histidine kinase-like ATPases
BD_RS15515	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS15520	SM00448	cheY-homologous receiver domain
BD_RS15520	SM00862	Transcriptional regulatory protein, C terminal
BD_RS15555	SM00382	ATPases associated with a variety of cellular activities
BD_RS15595	SM00028	Tetratricopeptide repeats
BD_RS15610	SM00382	ATPases associated with a variety of cellular activities
BD_RS15625	SM00020	Trypsin-like serine protease
BD_RS15655	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS15680	SM00631	BD_RS15680
BD_RS15690	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS15695	SM00387	Histidine kinase-like ATPases
BD_RS15695	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS15695	SM00448	cheY-homologous receiver domain
BD_RS15700	SM00448	cheY-homologous receiver domain
BD_RS15705	SM00382	ATPases associated with a variety of cellular activities
BD_RS15705	SM00448	cheY-homologous receiver domain
BD_RS15725	SM00478	endonuclease III
BD_RS15760	SM01004	Delta-aminolevulinic acid dehydratase
BD_RS15780	SM00387	Histidine kinase-like ATPases
BD_RS15780	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS15785	SM00448	cheY-homologous receiver domain
BD_RS15785	SM00862	Transcriptional regulatory protein, C terminal
BD_RS15795	SM00729	Elongator protein 3, MiaB family, Radical SAM
BD_RS15825	SM00248	ankyrin repeats
BD_RS15830	SM00487	DEAD-like helicases superfamily
BD_RS15830	SM00490	helicase superfamily c-terminal domain
BD_RS15845	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS15855	SM00448	cheY-homologous receiver domain
BD_RS15860	SM00138	Methyltransferase, chemotaxis proteins 
BD_RS15865	SM00073	Histidine Phosphotransfer domain
BD_RS15865	SM00260	Two component signalling adaptor domain
BD_RS15865	SM00387	Histidine kinase-like ATPases
BD_RS15865	SM01231	BD_RS15865
BD_RS15870	SM00260	Two component signalling adaptor domain
BD_RS15890	SM00861	Transketolase, pyrimidine binding domain
BD_RS15915	SM00020	Trypsin-like serine protease
BD_RS15920	SM00020	Trypsin-like serine protease
BD_RS15965	SM00448	cheY-homologous receiver domain
BD_RS15965	SM00862	Transcriptional regulatory protein, C terminal
BD_RS16015	SM00986	Uracil DNA glycosylase superfamily
BD_RS16015	SM00987	UreE urease accessory protein, C-terminal domain 
BD_RS16145	SM00448	cheY-homologous receiver domain
BD_RS16150	SM00073	Histidine Phosphotransfer domain
BD_RS16150	SM00387	Histidine kinase-like ATPases
BD_RS16150	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS16150	SM00448	cheY-homologous receiver domain
BD_RS16180	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BD_RS16180	SM00245	tail specific protease
BD_RS16235	SM00382	ATPases associated with a variety of cellular activities
BD_RS16250	SM00450	Rhodanese Homology Domain
BD_RS16320	SM00382	ATPases associated with a variety of cellular activities
BD_RS16335	SM00382	ATPases associated with a variety of cellular activities
BD_RS16355	SM00062	Bacterial periplasmic substrate-binding proteins
BD_RS16375	SM00878	Biotin carboxylase C-terminal domain
BD_RS16420	SM00382	ATPases associated with a variety of cellular activities
BD_RS16455	SM00028	Tetratricopeptide repeats
BD_RS16475	SM00155	Phospholipase D. Active site motifs.
BD_RS16520	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BD_RS16520	SM00387	Histidine kinase-like ATPases
BD_RS16520	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS16520	SM00448	cheY-homologous receiver domain
BD_RS16575	SM00729	Elongator protein 3, MiaB family, Radical SAM
BD_RS16645	SM00382	ATPases associated with a variety of cellular activities
BD_RS16650	SM01144	BD_RS16650
BD_RS16690	SM00091	PAS domain
BD_RS16690	SM00387	Histidine kinase-like ATPases
BD_RS16690	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS16695	SM00448	cheY-homologous receiver domain
BD_RS16700	SM00387	Histidine kinase-like ATPases
BD_RS16700	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS16700	SM00448	cheY-homologous receiver domain
BD_RS16740	SM00881	CoA binding domain
BD_RS16770	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BD_RS16825	SM00091	PAS domain
BD_RS16835	SM00487	DEAD-like helicases superfamily
BD_RS16835	SM00490	helicase superfamily c-terminal domain
BD_RS16840	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
BD_RS16860	SM00903	Flavin reductase like domain
BD_RS16900	SM00487	DEAD-like helicases superfamily
BD_RS16940	SM00014	Acid phosphatase homologues
BD_RS17020	SM01329	BD_RS17020
BD_RS17055	SM00382	ATPases associated with a variety of cellular activities
BD_RS17065	SM00493	BD_RS17065
BD_RS17120	SM00028	Tetratricopeptide repeats
BD_RS17120	SM00862	Transcriptional regulatory protein, C terminal
BD_RS17145	SM00382	ATPases associated with a variety of cellular activities
BD_RS17145	SM00464	Found in ATP-dependent protease La (LON)
BD_RS17150	SM00387	Histidine kinase-like ATPases
BD_RS17150	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS17155	SM00448	cheY-homologous receiver domain
BD_RS17165	SM00382	ATPases associated with a variety of cellular activities
BD_RS17165	SM00994	ClpX C4-type zinc finger
BD_RS17165	SM01086	C-terminal, D2-small domain, of ClpB protein
BD_RS17225	SM00028	Tetratricopeptide repeats
BD_RS17225	SM00267	diguanylate cyclase
BD_RS17265	SM00487	DEAD-like helicases superfamily
BD_RS17265	SM00490	helicase superfamily c-terminal domain
BD_RS17280	SM00387	Histidine kinase-like ATPases
BD_RS17280	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS17315	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BD_RS17335	SM00363	S4 RNA-binding domain
BD_RS17415	SM00382	ATPases associated with a variety of cellular activities
BD_RS17420	SM00382	ATPases associated with a variety of cellular activities
BD_RS17430	SM00881	CoA binding domain
BD_RS17455	SM00382	ATPases associated with a variety of cellular activities
BD_RS17510	SM00562	BD_RS17510
BD_RS17520	SM00028	Tetratricopeptide repeats
BD_RS17545	SM00479	BD_RS17545
BD_RS17570	SM00028	Tetratricopeptide repeats
BD_RS17575	SM00729	Elongator protein 3, MiaB family, Radical SAM
BD_RS17625	SM00316	Ribosomal protein S1-like RNA-binding domain
BD_RS17630	SM00382	ATPases associated with a variety of cellular activities
BD_RS17640	SM01133	BD_RS17640
BD_RS17645	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
BD_RS17665	SM00878	Biotin carboxylase C-terminal domain
BD_RS17705	SM00729	Elongator protein 3, MiaB family, Radical SAM
BD_RS17715	SM00271	DnaJ molecular chaperone homology domain
BD_RS17735	SM00382	ATPases associated with a variety of cellular activities
BD_RS17735	SM00464	Found in ATP-dependent protease La (LON)
BD_RS17770	SM00460	Transglutaminase/protease-like homologues
BD_RS17820	SM00487	DEAD-like helicases superfamily
BD_RS17820	SM00490	helicase superfamily c-terminal domain
BD_RS17820	SM00982	BD_RS17820
BD_RS17820	SM01058	CarD-like/TRCF domain
BD_RS17840	SM00382	ATPases associated with a variety of cellular activities
BD_RS17875	SM00470	ParB-like nuclease domain
BD_RS17895	SM01228	BD_RS17895
BD_RS17905	SM00393	Putative single-stranded nucleic acids-binding domain
BD_RS17925	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BD_RS17945	SM00100	Cyclic nucleotide-monophosphate binding domain
BD_RS17970	SM00387	Histidine kinase-like ATPases
BD_RS17970	SM00388	His Kinase A (phosphoacceptor) domain
BD_RS17995	SM00883	Chaperonin 10 Kd subunit
BD_RS18000	SM00449	Domain in SPla and the RYanodine Receptor. 
