locus-tag class description HW988_RS00005 PF00308 Bacterial dnaA protein HW988_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix HW988_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HW988_RS00010 PF02767 DNA polymerase III beta subunit, central domain HW988_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HW988_RS00015 PF02463 RecF/RecN/SMC N terminal domain HW988_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus HW988_RS00020 PF18053 DNA gyrase B subunit insert domain HW988_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS00020 PF01751 Toprim domain HW988_RS00020 PF00204 DNA gyrase B HW988_RS00025 PF00521 DNA gyrase/topoisomerase IV, subunit A HW988_RS00025 PF03989 DNA gyrase C-terminal domain, beta-propeller HW988_RS00045 PF00119 ATP synthase A chain HW988_RS00050 PF00137 ATP synthase subunit C HW988_RS00055 PF07739 TipAS antibiotic-recognition domain HW988_RS00055 PF13411 MerR HTH family regulatory protein HW988_RS00060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HW988_RS00060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HW988_RS00060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HW988_RS00060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HW988_RS00065 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HW988_RS00070 PF09312 SurA N-terminal domain HW988_RS00070 PF00639 PPIC-type PPIASE domain HW988_RS00080 PF00639 PPIC-type PPIASE domain HW988_RS00090 PF01012 Electron transfer flavoprotein domain HW988_RS00090 PF00766 Electron transfer flavoprotein FAD-binding domain HW988_RS00095 PF01012 Electron transfer flavoprotein domain HW988_RS00105 PF00890 FAD binding domain HW988_RS00105 PF02910 Fumarate reductase flavoprotein C-term HW988_RS00120 PF00082 Subtilase family HW988_RS00130 PF00561 alpha/beta hydrolase fold HW988_RS00140 PF01250 Ribosomal protein S6 HW988_RS00150 PF01281 Ribosomal protein L9, N-terminal domain HW988_RS00150 PF03948 Ribosomal protein L9, C-terminal domain HW988_RS00165 PF00106 short chain dehydrogenase HW988_RS00170 PF03796 DnaB-like helicase C terminal domain HW988_RS00170 PF00772 DnaB-like helicase N terminal domain HW988_RS00175 PF00072 Response regulator receiver domain HW988_RS00175 PF00158 Sigma-54 interaction domain HW988_RS00175 PF02954 Bacterial regulatory protein, Fis family HW988_RS00180 PF04055 Radical SAM superfamily HW988_RS00185 PF09397 Ftsk gamma domain HW988_RS00185 PF01580 FtsK/SpoIIIE family HW988_RS00185 PF17854 FtsK alpha domain HW988_RS00185 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HW988_RS00205 PF01678 Diaminopimelate epimerase HW988_RS00210 PF00701 Dihydrodipicolinate synthetase family HW988_RS00215 PF05173 Dihydrodipicolinate reductase, C-terminus HW988_RS00215 PF01113 Dihydrodipicolinate reductase, N-terminus HW988_RS00225 PF00923 Transaldolase/Fructose-6-phosphate aldolase HW988_RS00240 PF02875 Mur ligase family, glutamate ligase domain HW988_RS00240 PF08245 Mur ligase middle domain HW988_RS00255 PF00533 BRCA1 C Terminus (BRCT) domain HW988_RS00255 PF01653 NAD-dependent DNA ligase adenylation domain HW988_RS00255 PF12826 Helix-hairpin-helix motif HW988_RS00255 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HW988_RS00255 PF03120 NAD-dependent DNA ligase OB-fold domain HW988_RS00260 PF02686 Glu-tRNAGln amidotransferase C subunit HW988_RS00265 PF01425 Amidase HW988_RS00270 PF02934 GatB/GatE catalytic domain HW988_RS00270 PF02637 GatB domain HW988_RS00275 PF02541 Ppx/GppA phosphatase family HW988_RS00275 PF01761 3-dehydroquinate synthase HW988_RS00295 PF07497 Rho termination factor, RNA-binding domain HW988_RS00295 PF07498 Rho termination factor, N-terminal domain HW988_RS00295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HW988_RS00310 PF01197 Ribosomal protein L31 HW988_RS00315 PF00472 RF-1 domain HW988_RS00315 PF03462 PCRF domain HW988_RS00320 PF17827 PrmC N-terminal domain HW988_RS00320 PF05175 Methyltransferase small domain HW988_RS00325 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HW988_RS00350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HW988_RS00350 PF02403 Seryl-tRNA synthetase N-terminal domain HW988_RS00370 PF09335 SNARE associated Golgi protein HW988_RS00395 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HW988_RS00405 PF14489 QueF-like protein HW988_RS00410 PF00311 Phosphoenolpyruvate carboxylase HW988_RS00460 PF00089 Trypsin HW988_RS00485 PF00551 Formyl transferase HW988_RS00485 PF02911 Formyl transferase, C-terminal domain HW988_RS00490 PF00501 AMP-binding enzyme HW988_RS00490 PF13193 AMP-binding enzyme C-terminal domain HW988_RS00500 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HW988_RS00500 PF00391 PEP-utilising enzyme, mobile domain HW988_RS00520 PF00005 ABC transporter HW988_RS00530 PF00202 Aminotransferase class-III HW988_RS00535 PF16363 GDP-mannose 4,6 dehydratase HW988_RS00575 PF00166 Chaperonin 10 Kd subunit HW988_RS00580 PF00118 TCP-1/cpn60 chaperonin family HW988_RS00595 PF00072 Response regulator receiver domain HW988_RS00630 PF00437 Type II/IV secretion system protein HW988_RS00670 PF00672 HAMP domain HW988_RS00670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS00670 PF02203 Tar ligand binding domain homologue HW988_RS00685 PF13525 Outer membrane lipoprotein HW988_RS00695 PF00202 Aminotransferase class-III HW988_RS00700 PF07687 Peptidase dimerisation domain HW988_RS00700 PF01546 Peptidase family M20/M25/M40 HW988_RS00705 PF04958 Arginine N-succinyltransferase beta subunit HW988_RS00710 PF00171 Aldehyde dehydrogenase family HW988_RS00715 PF02618 YceG-like family HW988_RS00725 PF01842 ACT domain HW988_RS00725 PF00696 Amino acid kinase family HW988_RS00735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS00735 PF02203 Tar ligand binding domain homologue HW988_RS00735 PF00672 HAMP domain HW988_RS00740 PF01207 Dihydrouridine synthase (Dus) HW988_RS00750 PF00005 ABC transporter HW988_RS00760 PF00912 Transglycosylase HW988_RS00765 PF01370 NAD dependent epimerase/dehydratase family HW988_RS00770 PF01569 PAP2 superfamily HW988_RS00775 PF01618 MotA/TolQ/ExbB proton channel family HW988_RS00780 PF00691 OmpA family HW988_RS00780 PF13677 Membrane MotB of proton-channel complex MotA/MotB HW988_RS00805 PF00085 Thioredoxin HW988_RS00815 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HW988_RS00820 PF03710 Glutamate-ammonia ligase adenylyltransferase HW988_RS00820 PF08335 GlnD PII-uridylyltransferase HW988_RS00825 PF07676 WD40-like Beta Propeller Repeat HW988_RS00825 PF04052 TolB amino-terminal domain HW988_RS00835 PF02472 Biopolymer transport protein ExbD/TolR HW988_RS00840 PF01618 MotA/TolQ/ExbB proton channel family HW988_RS00855 PF01458 Uncharacterized protein family (UPF0051) HW988_RS00860 PF00005 ABC transporter HW988_RS00865 PF01458 Uncharacterized protein family (UPF0051) HW988_RS00870 PF00266 Aminotransferase class-V HW988_RS00875 PF01106 NifU-like domain HW988_RS00875 PF04324 BFD-like [2Fe-2S] binding domain HW988_RS00875 PF01592 NifU-like N terminal domain HW988_RS00900 PF13742 OB-fold nucleic acid binding domain HW988_RS00900 PF02601 Exonuclease VII, large subunit HW988_RS00905 PF02609 Exonuclease VII small subunit HW988_RS00910 PF00348 Polyprenyl synthetase HW988_RS00925 PF01479 S4 domain HW988_RS00925 PF01728 FtsJ-like methyltransferase HW988_RS00935 PF00557 Metallopeptidase family M24 HW988_RS00935 PF05195 Aminopeptidase P, N-terminal domain HW988_RS00960 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HW988_RS00960 PF01266 FAD dependent oxidoreductase HW988_RS00980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS00980 PF13188 PAS domain HW988_RS00980 PF00072 Response regulator receiver domain HW988_RS00980 PF08448 PAS fold HW988_RS00980 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS00990 PF04002 RadC-like JAB domain HW988_RS01005 PF07879 PHB/PHA accumulation regulator DNA-binding domain HW988_RS01005 PF05233 PHB accumulation regulatory domain HW988_RS01030 PF06798 PrkA serine protein kinase C-terminal domain HW988_RS01030 PF08298 PrkA AAA domain HW988_RS01035 PF04285 Protein of unknown function (DUF444) HW988_RS01040 PF04293 SpoVR like protein HW988_RS01045 PF01253 Translation initiation factor SUI1 HW988_RS01050 PF00486 Transcriptional regulatory protein, C terminal HW988_RS01050 PF00072 Response regulator receiver domain HW988_RS01080 PF14437 MafB19-like deaminase HW988_RS01090 PF01165 Ribosomal protein S21 HW988_RS01095 PF09424 Yqey-like protein HW988_RS01100 PF08275 DNA primase catalytic core, N-terminal domain HW988_RS01100 PF01807 CHC2 zinc finger HW988_RS01100 PF10410 DnaB-helicase binding domain of primase HW988_RS01105 PF04545 Sigma-70, region 4 HW988_RS01105 PF00140 Sigma-70 factor, region 1.2 HW988_RS01105 PF04539 Sigma-70 region 3 HW988_RS01105 PF04546 Sigma-70, non-essential region HW988_RS01105 PF04542 Sigma-70 region 2 HW988_RS01105 PF03979 Sigma-70 factor, region 1.1 HW988_RS01120 PF03061 Thioesterase superfamily HW988_RS01175 PF02796 Helix-turn-helix domain of resolvase HW988_RS01175 PF00239 Resolvase, N terminal domain HW988_RS01225 PF02810 SEC-C motif HW988_RS01225 PF07517 SecA DEAD-like domain HW988_RS01225 PF07516 SecA Wing and Scaffold domain HW988_RS01225 PF01043 SecA preprotein cross-linking domain HW988_RS01265 PF08240 Alcohol dehydrogenase GroES-like domain HW988_RS01265 PF00107 Zinc-binding dehydrogenase HW988_RS01290 PF01597 Glycine cleavage H-protein HW988_RS01295 PF03951 Glutamine synthetase, beta-Grasp domain HW988_RS01295 PF00120 Glutamine synthetase, catalytic domain HW988_RS01300 PF00543 Nitrogen regulatory protein P-II HW988_RS01310 PF00588 SpoU rRNA Methylase family HW988_RS01315 PF07516 SecA Wing and Scaffold domain HW988_RS01315 PF01043 SecA preprotein cross-linking domain HW988_RS01315 PF07517 SecA DEAD-like domain HW988_RS01330 PF04355 SmpA / OmlA family HW988_RS01360 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HW988_RS01360 PF02790 Cytochrome C oxidase subunit II, transmembrane domain HW988_RS01365 PF00510 Cytochrome c oxidase subunit III HW988_RS01365 PF00115 Cytochrome C and Quinol oxidase polypeptide I HW988_RS01370 PF00510 Cytochrome c oxidase subunit III HW988_RS01380 PF01040 UbiA prenyltransferase family HW988_RS01385 PF13417 Glutathione S-transferase, N-terminal domain HW988_RS01405 PF00080 Copper/zinc superoxide dismutase (SODC) HW988_RS01415 PF00158 Sigma-54 interaction domain HW988_RS01415 PF00072 Response regulator receiver domain HW988_RS01415 PF02954 Bacterial regulatory protein, Fis family HW988_RS01420 PF00672 HAMP domain HW988_RS01420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HW988_RS01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS01420 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS01420 PF01627 Hpt domain HW988_RS01420 PF00072 Response regulator receiver domain HW988_RS01440 PF04209 homogentisate 1,2-dioxygenase HW988_RS01450 PF08240 Alcohol dehydrogenase GroES-like domain HW988_RS01450 PF00107 Zinc-binding dehydrogenase HW988_RS01465 PF02527 rRNA small subunit methyltransferase G HW988_RS01475 PF08534 Redoxin HW988_RS01485 PF00271 Helicase conserved C-terminal domain HW988_RS01485 PF04851 Type III restriction enzyme, res subunit HW988_RS01515 PF04072 Leucine carboxyl methyltransferase HW988_RS01530 PF03060 Nitronate monooxygenase HW988_RS01540 PF00561 alpha/beta hydrolase fold HW988_RS01555 PF00962 Adenosine/AMP deaminase HW988_RS01565 PF03960 ArsC family HW988_RS01675 PF00271 Helicase conserved C-terminal domain HW988_RS01675 PF00270 DEAD/DEAH box helicase HW988_RS01685 PF03601 Conserved hypothetical protein 698 HW988_RS01690 PF00248 Aldo/keto reductase family HW988_RS01700 PF02797 Chalcone and stilbene synthases, C-terminal domain HW988_RS01700 PF00195 Chalcone and stilbene synthases, N-terminal domain HW988_RS01705 PF07690 Major Facilitator Superfamily HW988_RS01720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HW988_RS01725 PF04461 Protein of unknown function (DUF520) HW988_RS01730 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HW988_RS01735 PF13472 GDSL-like Lipase/Acylhydrolase family HW988_RS01740 PF00005 ABC transporter HW988_RS01750 PF03481 Putative GTP-binding controlling metal-binding HW988_RS01750 PF01300 Telomere recombination HW988_RS01760 PF01553 Acyltransferase HW988_RS01765 PF00817 impB/mucB/samB family HW988_RS01765 PF11798 IMS family HHH motif HW988_RS01775 PF03960 ArsC family HW988_RS01780 PF00491 Arginase family HW988_RS01785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HW988_RS01790 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS01795 PF12911 N-terminal TM domain of oligopeptide transport permease C HW988_RS01795 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS01810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HW988_RS01810 PF17944 Arginine decarboxylase C-terminal helical extension HW988_RS01810 PF17810 Arginine decarboxylase helical bundle domain HW988_RS01815 PF09334 tRNA synthetases class I (M) HW988_RS01815 PF13603 Leucyl-tRNA synthetase, Domain 2 HW988_RS01815 PF00133 tRNA synthetases class I (I, L, M and V) HW988_RS01815 PF08264 Anticodon-binding domain of tRNA HW988_RS01825 PF16916 Dimerisation domain of Zinc Transporter HW988_RS01825 PF01545 Cation efflux family HW988_RS01830 PF02390 Putative methyltransferase HW988_RS01840 PF07992 Pyridine nucleotide-disulphide oxidoreductase HW988_RS01845 PF00486 Transcriptional regulatory protein, C terminal HW988_RS01845 PF00072 Response regulator receiver domain HW988_RS01855 PF00873 AcrB/AcrD/AcrF family HW988_RS01875 PF13419 Haloacid dehalogenase-like hydrolase HW988_RS01880 PF01389 OmpA-like transmembrane domain HW988_RS01880 PF00691 OmpA family HW988_RS01900 PF02811 PHP domain HW988_RS01900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HW988_RS01900 PF14579 Helix-hairpin-helix motif HW988_RS01900 PF07733 Bacterial DNA polymerase III alpha NTPase domain HW988_RS01945 PF17831 Pyruvate dehydrogenase E1 component middle domain HW988_RS01945 PF00456 Transketolase, thiamine diphosphate binding domain HW988_RS01990 PF01476 LysM domain HW988_RS01990 PF08525 Opacity-associated protein A N-terminal motif HW988_RS01990 PF01551 Peptidase family M23 HW988_RS02010 PF00108 Thiolase, N-terminal domain HW988_RS02010 PF02803 Thiolase, C-terminal domain HW988_RS02030 PF01966 HD domain HW988_RS02040 PF00700 Bacterial flagellin C-terminal helical region HW988_RS02040 PF00669 Bacterial flagellin N-terminal helical region HW988_RS02045 PF00669 Bacterial flagellin N-terminal helical region HW988_RS02045 PF00700 Bacterial flagellin C-terminal helical region HW988_RS02060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS02060 PF03466 LysR substrate binding domain HW988_RS02065 PF03109 ABC1 family HW988_RS02070 PF00575 S1 RNA binding domain HW988_RS02070 PF08461 Ribonuclease R winged-helix domain HW988_RS02070 PF17876 Cold shock domain HW988_RS02070 PF00773 RNB domain HW988_RS02070 PF08206 Ribonuclease B OB domain HW988_RS02090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS02120 PF13545 Crp-like helix-turn-helix domain HW988_RS02120 PF00027 Cyclic nucleotide-binding domain HW988_RS02125 PF01980 tRNA-methyltransferase O HW988_RS02125 PF18389 TrmO C-terminal domain HW988_RS02140 PF10458 Valyl tRNA synthetase tRNA binding arm HW988_RS02140 PF00133 tRNA synthetases class I (I, L, M and V) HW988_RS02140 PF08264 Anticodon-binding domain of tRNA HW988_RS02155 PF07690 Major Facilitator Superfamily HW988_RS02165 PF02594 Uncharacterised ACR, YggU family COG1872 HW988_RS02175 PF03807 NADP oxidoreductase coenzyme F420-dependent HW988_RS02175 PF14748 Pyrroline-5-carboxylate reductase dimerisation HW988_RS02180 PF01168 Alanine racemase, N-terminal domain HW988_RS02195 PF02545 Maf-like protein HW988_RS02220 PF16697 Inner membrane component of T3SS, cytoplasmic domain HW988_RS02235 PF01618 MotA/TolQ/ExbB proton channel family HW988_RS02240 PF02472 Biopolymer transport protein ExbD/TolR HW988_RS02265 PF01066 CDP-alcohol phosphatidyltransferase HW988_RS02270 PF01118 Semialdehyde dehydrogenase, NAD binding domain HW988_RS02270 PF02774 Semialdehyde dehydrogenase, dimerisation domain HW988_RS02290 PF01381 Helix-turn-helix HW988_RS02295 PF01416 tRNA pseudouridine synthase HW988_RS02300 PF00572 Ribosomal protein L13 HW988_RS02305 PF00380 Ribosomal protein S9/S16 HW988_RS02315 PF00326 Prolyl oligopeptidase family HW988_RS02315 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HW988_RS02320 PF00672 HAMP domain HW988_RS02320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS02320 PF02203 Tar ligand binding domain homologue HW988_RS02345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HW988_RS02345 PF01411 tRNA synthetases class II (A) HW988_RS02345 PF02272 DHHA1 domain HW988_RS02355 PF00149 Calcineurin-like phosphoesterase HW988_RS02360 PF00501 AMP-binding enzyme HW988_RS02360 PF13193 AMP-binding enzyme C-terminal domain HW988_RS02370 PF04608 Phosphatidylglycerophosphatase A HW988_RS02375 PF02464 Competence-damaged protein HW988_RS02375 PF00994 Probable molybdopterin binding domain HW988_RS02375 PF18146 Damage-inducible protein CinA KH domain HW988_RS02380 PF00154 recA bacterial DNA recombination protein HW988_RS02420 PF00255 Glutathione peroxidase HW988_RS02435 PF13840 ACT domain HW988_RS02435 PF01842 ACT domain HW988_RS02435 PF00696 Amino acid kinase family HW988_RS02445 PF00460 Flagella basal body rod protein HW988_RS02445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HW988_RS02450 PF00460 Flagella basal body rod protein HW988_RS02450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HW988_RS02465 PF02119 Flagellar P-ring protein HW988_RS02485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HW988_RS02485 PF00460 Flagella basal body rod protein HW988_RS02490 PF00669 Bacterial flagellin N-terminal helical region HW988_RS02495 PF02599 Global regulator protein family HW988_RS02500 PF02623 FliW protein HW988_RS02515 PF02646 RmuC family HW988_RS02520 PF01040 UbiA prenyltransferase family HW988_RS02530 PF13193 AMP-binding enzyme C-terminal domain HW988_RS02530 PF00501 AMP-binding enzyme HW988_RS02555 PF00348 Polyprenyl synthetase HW988_RS02565 PF04445 Putative SAM-dependent methyltransferase HW988_RS02600 PF00285 Citrate synthase, C-terminal domain HW988_RS02615 PF01230 HIT domain HW988_RS02645 PF01584 CheW-like domain HW988_RS02645 PF02895 Signal transducing histidine kinase, homodimeric domain HW988_RS02645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS02645 PF01627 Hpt domain HW988_RS02645 PF07194 P2 response regulator binding domain HW988_RS02655 PF00072 Response regulator receiver domain HW988_RS02655 PF01339 CheB methylesterase HW988_RS02660 PF00171 Aldehyde dehydrogenase family HW988_RS02665 PF01820 D-ala D-ala ligase N-terminus HW988_RS02665 PF07478 D-ala D-ala ligase C-terminus HW988_RS02690 PF00730 HhH-GPD superfamily base excision DNA repair protein HW988_RS02690 PF00633 Helix-hairpin-helix motif HW988_RS02700 PF01547 Bacterial extracellular solute-binding protein HW988_RS02710 PF08402 TOBE domain HW988_RS02710 PF00005 ABC transporter HW988_RS02715 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS02715 PF00072 Response regulator receiver domain HW988_RS02715 PF09308 LuxQ, periplasmic HW988_RS02715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS02725 PF00669 Bacterial flagellin N-terminal helical region HW988_RS02725 PF00700 Bacterial flagellin C-terminal helical region HW988_RS02735 PF00669 Bacterial flagellin N-terminal helical region HW988_RS02735 PF00700 Bacterial flagellin C-terminal helical region HW988_RS02745 PF02465 Flagellar hook-associated protein 2 N-terminus HW988_RS02745 PF07195 Flagellar hook-associated protein 2 C-terminus HW988_RS02745 PF07196 Flagellin hook IN motif HW988_RS02750 PF02561 Flagellar protein FliS HW988_RS02785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS02785 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS02785 PF00989 PAS fold HW988_RS02790 PF00072 Response regulator receiver domain HW988_RS02800 PF01467 Cytidylyltransferase-like HW988_RS02805 PF00155 Aminotransferase class I and II HW988_RS02840 PF00089 Trypsin HW988_RS02845 PF00089 Trypsin HW988_RS02850 PF01266 FAD dependent oxidoreductase HW988_RS02865 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HW988_RS02865 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HW988_RS02870 PF00355 Rieske [2Fe-2S] domain HW988_RS02880 PF10672 S-adenosylmethionine-dependent methyltransferase HW988_RS02880 PF17785 PUA-like domain HW988_RS02890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS02890 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HW988_RS02890 PF00672 HAMP domain HW988_RS02890 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS02890 PF01627 Hpt domain HW988_RS02890 PF00072 Response regulator receiver domain HW988_RS02900 PF00072 Response regulator receiver domain HW988_RS02900 PF00486 Transcriptional regulatory protein, C terminal HW988_RS02920 PF00106 short chain dehydrogenase HW988_RS02940 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain HW988_RS02940 PF01522 Polysaccharide deacetylase HW988_RS02950 PF01522 Polysaccharide deacetylase HW988_RS02970 PF01467 Cytidylyltransferase-like HW988_RS02970 PF00294 pfkB family carbohydrate kinase HW988_RS02980 PF04452 RNA methyltransferase HW988_RS03010 PF00892 EamA-like transporter family HW988_RS03015 PF00849 RNA pseudouridylate synthase HW988_RS03015 PF01479 S4 domain HW988_RS03050 PF11412 Disulphide bond corrector protein DsbC HW988_RS03050 PF02683 Cytochrome C biogenesis protein transmembrane region HW988_RS03055 PF01618 MotA/TolQ/ExbB proton channel family HW988_RS03060 PF13677 Membrane MotB of proton-channel complex MotA/MotB HW988_RS03060 PF00691 OmpA family HW988_RS03070 PF00929 Exonuclease HW988_RS03070 PF14480 DNA polymerase III polC-type N-terminus I HW988_RS03070 PF02811 PHP domain HW988_RS03070 PF07733 Bacterial DNA polymerase III alpha NTPase domain HW988_RS03070 PF11490 DNA polymerase III polC-type N-terminus II HW988_RS03070 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HW988_RS03075 PF02190 ATP-dependent protease La (LON) substrate-binding domain HW988_RS03075 PF05362 Lon protease (S16) C-terminal proteolytic domain HW988_RS03075 PF00004 ATPase family associated with various cellular activities (AAA) HW988_RS03080 PF01252 Signal peptidase (SPase) II HW988_RS03090 PF01551 Peptidase family M23 HW988_RS03090 PF01464 Transglycosylase SLT domain HW988_RS03090 PF10145 Phage-related minor tail protein HW988_RS03110 PF01565 FAD binding domain HW988_RS03110 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HW988_RS03120 PF00186 Dihydrofolate reductase HW988_RS03125 PF00303 Thymidylate synthase HW988_RS03135 PF01169 Uncharacterized protein family UPF0016 HW988_RS03140 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HW988_RS03145 PF01176 Translation initiation factor 1A / IF-1 HW988_RS03170 PF01795 MraW methylase family HW988_RS03180 PF03717 Penicillin-binding Protein dimerisation domain HW988_RS03180 PF00905 Penicillin binding protein transpeptidase domain HW988_RS03200 PF08245 Mur ligase middle domain HW988_RS03200 PF02875 Mur ligase family, glutamate ligase domain HW988_RS03200 PF01225 Mur ligase family, catalytic domain HW988_RS03205 PF02875 Mur ligase family, glutamate ligase domain HW988_RS03205 PF08245 Mur ligase middle domain HW988_RS03205 PF01225 Mur ligase family, catalytic domain HW988_RS03225 PF00953 Glycosyl transferase family 4 HW988_RS03230 PF02875 Mur ligase family, glutamate ligase domain HW988_RS03230 PF08245 Mur ligase middle domain HW988_RS03240 PF01098 Cell cycle protein HW988_RS03245 PF04101 Glycosyltransferase family 28 C-terminal domain HW988_RS03245 PF03033 Glycosyltransferase family 28 N-terminal domain HW988_RS03250 PF08245 Mur ligase middle domain HW988_RS03250 PF01225 Mur ligase family, catalytic domain HW988_RS03250 PF02875 Mur ligase family, glutamate ligase domain HW988_RS03275 PF02203 Tar ligand binding domain homologue HW988_RS03275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS03275 PF00672 HAMP domain HW988_RS03280 PF03799 Cell division protein FtsQ HW988_RS03280 PF08478 POTRA domain, FtsQ-type HW988_RS03285 PF02491 SHS2 domain inserted in FTSA HW988_RS03290 PF12327 FtsZ family, C-terminal domain HW988_RS03290 PF00091 Tubulin/FtsZ family, GTPase domain HW988_RS03295 PF00149 Calcineurin-like phosphoesterase HW988_RS03315 PF00694 Aconitase C-terminal domain HW988_RS03315 PF00330 Aconitase family (aconitate hydratase) HW988_RS03355 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HW988_RS03355 PF00326 Prolyl oligopeptidase family HW988_RS03370 PF02463 RecF/RecN/SMC N terminal domain HW988_RS03375 PF01513 ATP-NAD kinase HW988_RS03380 PF01432 Peptidase family M3 HW988_RS03405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HW988_RS03405 PF02770 Acyl-CoA dehydrogenase, middle domain HW988_RS03405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HW988_RS03410 PF00501 AMP-binding enzyme HW988_RS03415 PF08308 PEGA domain HW988_RS03415 PF00069 Protein kinase domain HW988_RS03420 PF01121 Dephospho-CoA kinase HW988_RS03465 PF12705 PD-(D/E)XK nuclease superfamily HW988_RS03465 PF13361 UvrD-like helicase C-terminal domain HW988_RS03465 PF00580 UvrD/REP helicase N-terminal domain HW988_RS03470 PF00075 RNase H HW988_RS03475 PF00106 short chain dehydrogenase HW988_RS03490 PF02910 Fumarate reductase flavoprotein C-term HW988_RS03490 PF00890 FAD binding domain HW988_RS03495 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS03505 PF00842 Alanine racemase, C-terminal domain HW988_RS03505 PF01168 Alanine racemase, N-terminal domain HW988_RS03510 PF02405 Permease MlaE HW988_RS03515 PF00005 ABC transporter HW988_RS03535 PF01336 OB-fold nucleic acid binding domain HW988_RS03535 PF01966 HD domain HW988_RS03540 PF00132 Bacterial transferase hexapeptide (six repeats) HW988_RS03555 PF01479 S4 domain HW988_RS03555 PF00163 Ribosomal protein S4/S9 N-terminal domain HW988_RS03570 PF00270 DEAD/DEAH box helicase HW988_RS03570 PF04408 Helicase associated domain (HA2) HW988_RS03570 PF00271 Helicase conserved C-terminal domain HW988_RS03570 PF08482 ATP-dependent helicase C-terminal HW988_RS03575 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HW988_RS03590 PF00005 ABC transporter HW988_RS03595 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS03615 PF00664 ABC transporter transmembrane region HW988_RS03615 PF00005 ABC transporter HW988_RS03620 PF00005 ABC transporter HW988_RS03620 PF00664 ABC transporter transmembrane region HW988_RS03645 PF00873 AcrB/AcrD/AcrF family HW988_RS03650 PF07992 Pyridine nucleotide-disulphide oxidoreductase HW988_RS03670 PF05114 Protein of unknown function (DUF692) HW988_RS03675 PF04264 YceI-like domain HW988_RS03680 PF00082 Subtilase family HW988_RS03685 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HW988_RS03690 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HW988_RS03690 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HW988_RS03700 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HW988_RS03700 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HW988_RS03700 PF10531 SLBB domain HW988_RS03705 PF00384 Molybdopterin oxidoreductase HW988_RS03705 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal HW988_RS03705 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HW988_RS03710 PF12838 4Fe-4S dicluster domain HW988_RS03730 PF03741 Integral membrane protein TerC family HW988_RS03735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS03735 PF03466 LysR substrate binding domain HW988_RS03765 PF02565 Recombination protein O C terminal HW988_RS03765 PF11967 Recombination protein O N terminal HW988_RS03770 PF00589 Phage integrase family HW988_RS03770 PF02899 Phage integrase, N-terminal SAM-like domain HW988_RS03775 PF00158 Sigma-54 interaction domain HW988_RS03775 PF02954 Bacterial regulatory protein, Fis family HW988_RS03775 PF00072 Response regulator receiver domain HW988_RS03795 PF00669 Bacterial flagellin N-terminal helical region HW988_RS03795 PF00700 Bacterial flagellin C-terminal helical region HW988_RS03800 PF00690 Cation transporter/ATPase, N-terminus HW988_RS03800 PF00689 Cation transporting ATPase, C-terminus HW988_RS03810 PF07724 AAA domain (Cdc48 subfamily) HW988_RS03810 PF00004 ATPase family associated with various cellular activities (AAA) HW988_RS03810 PF17871 AAA lid domain HW988_RS03810 PF02861 Clp amino terminal domain, pathogenicity island component HW988_RS03810 PF10431 C-terminal, D2-small domain, of ClpB protein HW988_RS03820 PF07043 Protein of unknown function (DUF1328) HW988_RS03825 PF00158 Sigma-54 interaction domain HW988_RS03825 PF02954 Bacterial regulatory protein, Fis family HW988_RS03825 PF00072 Response regulator receiver domain HW988_RS03835 PF00677 Lumazine binding domain HW988_RS03840 PF00925 GTP cyclohydrolase II HW988_RS03840 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HW988_RS03845 PF00885 6,7-dimethyl-8-ribityllumazine synthase HW988_RS03850 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS03850 PF00989 PAS fold HW988_RS03850 PF00672 HAMP domain HW988_RS03850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS03855 PF00158 Sigma-54 interaction domain HW988_RS03855 PF00072 Response regulator receiver domain HW988_RS03855 PF02954 Bacterial regulatory protein, Fis family HW988_RS03860 PF03129 Anticodon binding domain HW988_RS03860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HW988_RS03860 PF09180 Prolyl-tRNA synthetase, C-terminal HW988_RS03870 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HW988_RS03875 PF08032 RNA 2'-O ribose methyltransferase substrate binding HW988_RS03875 PF00588 SpoU rRNA Methylase family HW988_RS03900 PF00009 Elongation factor Tu GTP binding domain HW988_RS03900 PF03144 Elongation factor Tu domain 2 HW988_RS03900 PF03143 Elongation factor Tu C-terminal domain HW988_RS03915 PF02357 Transcription termination factor nusG HW988_RS03915 PF00467 KOW motif HW988_RS03920 PF00298 Ribosomal protein L11, RNA binding domain HW988_RS03920 PF03946 Ribosomal protein L11, N-terminal domain HW988_RS03925 PF00687 Ribosomal protein L1p/L10e family HW988_RS03930 PF00466 Ribosomal protein L10 HW988_RS03935 PF00542 Ribosomal protein L7/L12 C-terminal domain HW988_RS03935 PF16320 Ribosomal protein L7/L12 dimerisation domain HW988_RS03940 PF04560 RNA polymerase Rpb2, domain 7 HW988_RS03940 PF00562 RNA polymerase Rpb2, domain 6 HW988_RS03940 PF10385 RNA polymerase beta subunit external 1 domain HW988_RS03940 PF04561 RNA polymerase Rpb2, domain 2 HW988_RS03940 PF04565 RNA polymerase Rpb2, domain 3 HW988_RS03940 PF04563 RNA polymerase beta subunit HW988_RS03945 PF00623 RNA polymerase Rpb1, domain 2 HW988_RS03945 PF04983 RNA polymerase Rpb1, domain 3 HW988_RS03945 PF05000 RNA polymerase Rpb1, domain 4 HW988_RS03945 PF04998 RNA polymerase Rpb1, domain 5 HW988_RS03945 PF04997 RNA polymerase Rpb1, domain 1 HW988_RS03950 PF00164 Ribosomal protein S12/S23 HW988_RS03955 PF00177 Ribosomal protein S7p/S5e HW988_RS03960 PF00009 Elongation factor Tu GTP binding domain HW988_RS03960 PF03764 Elongation factor G, domain IV HW988_RS03960 PF03144 Elongation factor Tu domain 2 HW988_RS03960 PF14492 Elongation Factor G, domain II HW988_RS03960 PF00679 Elongation factor G C-terminus HW988_RS03965 PF00338 Ribosomal protein S10p/S20e HW988_RS03970 PF00297 Ribosomal protein L3 HW988_RS03975 PF00573 Ribosomal protein L4/L1 family HW988_RS03980 PF00276 Ribosomal protein L23 HW988_RS03985 PF03947 Ribosomal Proteins L2, C-terminal domain HW988_RS03985 PF00181 Ribosomal Proteins L2, RNA binding domain HW988_RS03990 PF00203 Ribosomal protein S19 HW988_RS03995 PF00237 Ribosomal protein L22p/L17e HW988_RS04000 PF00189 Ribosomal protein S3, C-terminal domain HW988_RS04000 PF07650 KH domain HW988_RS04005 PF00252 Ribosomal protein L16p/L10e HW988_RS04010 PF00831 Ribosomal L29 protein HW988_RS04015 PF00366 Ribosomal protein S17 HW988_RS04020 PF00238 Ribosomal protein L14p/L23e HW988_RS04025 PF00673 ribosomal L5P family C-terminus HW988_RS04025 PF00281 Ribosomal protein L5 HW988_RS04030 PF00253 Ribosomal protein S14p/S29e HW988_RS04035 PF00410 Ribosomal protein S8 HW988_RS04040 PF00347 Ribosomal protein L6 HW988_RS04045 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HW988_RS04050 PF03719 Ribosomal protein S5, C-terminal domain HW988_RS04050 PF00333 Ribosomal protein S5, N-terminal domain HW988_RS04055 PF00327 Ribosomal protein L30p/L7e HW988_RS04060 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HW988_RS04065 PF00344 SecY translocase HW988_RS04070 PF05191 Adenylate kinase, active site lid HW988_RS04075 PF00444 Ribosomal protein L36 HW988_RS04080 PF00416 Ribosomal protein S13/S18 HW988_RS04085 PF00411 Ribosomal protein S11 HW988_RS04090 PF00163 Ribosomal protein S4/S9 N-terminal domain HW988_RS04090 PF01479 S4 domain HW988_RS04095 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HW988_RS04095 PF01000 RNA polymerase Rpb3/RpoA insert domain HW988_RS04095 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HW988_RS04100 PF01196 Ribosomal protein L17 HW988_RS04105 PF00578 AhpC/TSA family HW988_RS04115 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS04115 PF00497 Bacterial extracellular solute-binding proteins, family 3 HW988_RS04115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS04115 PF00072 Response regulator receiver domain HW988_RS04140 PF00483 Nucleotidyl transferase HW988_RS04140 PF01050 Mannose-6-phosphate isomerase HW988_RS04165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HW988_RS04165 PF02770 Acyl-CoA dehydrogenase, middle domain HW988_RS04165 PF18158 Adaptive response protein AidB N-terminal domain HW988_RS04185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS04185 PF02203 Tar ligand binding domain homologue HW988_RS04185 PF00672 HAMP domain HW988_RS04205 PF00128 Alpha amylase, catalytic domain HW988_RS04205 PF16657 Maltogenic Amylase, C-terminal domain HW988_RS04210 PF12697 Alpha/beta hydrolase family HW988_RS04220 PF07726 ATPase family associated with various cellular activities (AAA) HW988_RS04220 PF17863 AAA lid domain HW988_RS04225 PF01882 Protein of unknown function DUF58 HW988_RS04240 PF02735 Ku70/Ku80 beta-barrel domain HW988_RS04245 PF01351 Ribonuclease HII HW988_RS04250 PF04679 ATP dependent DNA ligase C terminal region HW988_RS04250 PF01068 ATP dependent DNA ligase domain HW988_RS04250 PF13298 DNA polymerase Ligase (LigD) HW988_RS04260 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain HW988_RS04260 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain HW988_RS04265 PF05532 CsbD-like HW988_RS04280 PF04403 Paraquat-inducible protein A HW988_RS04285 PF00106 short chain dehydrogenase HW988_RS04330 PF05036 Sporulation related domain HW988_RS04330 PF03330 Lytic transglycolase HW988_RS04335 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HW988_RS04355 PF00534 Glycosyl transferases group 1 HW988_RS04355 PF13439 Glycosyltransferase Family 4 HW988_RS04375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HW988_RS04395 PF03631 Virulence factor BrkB HW988_RS04405 PF00753 Metallo-beta-lactamase superfamily HW988_RS04420 PF00158 Sigma-54 interaction domain HW988_RS04420 PF02954 Bacterial regulatory protein, Fis family HW988_RS04420 PF00072 Response regulator receiver domain HW988_RS04425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HW988_RS04425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HW988_RS04445 PF13407 Periplasmic binding protein domain HW988_RS04450 PF01565 FAD binding domain HW988_RS04450 PF02913 FAD linked oxidases, C-terminal domain HW988_RS04460 PF00462 Glutaredoxin HW988_RS04470 PF00884 Sulfatase HW988_RS04515 PF08719 Domain of unknown function (DUF1768) HW988_RS04535 PF12706 Beta-lactamase superfamily domain HW988_RS04540 PF10415 Fumarase C C-terminus HW988_RS04540 PF00206 Lyase HW988_RS04565 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HW988_RS04575 PF00912 Transglycosylase HW988_RS04640 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS04640 PF18415 Histidine kinase receptor ArcB trans-membrane domain HW988_RS04640 PF01627 Hpt domain HW988_RS04640 PF00989 PAS fold HW988_RS04640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS04640 PF00072 Response regulator receiver domain HW988_RS04645 PF01627 Hpt domain HW988_RS04645 PF00072 Response regulator receiver domain HW988_RS04645 PF00497 Bacterial extracellular solute-binding proteins, family 3 HW988_RS04645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS04645 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS04665 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HW988_RS04680 PF01654 Cytochrome bd terminal oxidase subunit I HW988_RS04690 PF04303 PrpF protein HW988_RS04700 PF14718 Soluble lytic murein transglycosylase L domain HW988_RS04700 PF01464 Transglycosylase SLT domain HW988_RS04705 PF13426 PAS domain HW988_RS04705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS04705 PF08447 PAS fold HW988_RS04710 PF01739 CheR methyltransferase, SAM binding domain HW988_RS04710 PF03705 CheR methyltransferase, all-alpha domain HW988_RS04715 PF01584 CheW-like domain HW988_RS04720 PF13533 Biotin-lipoyl like HW988_RS04725 PF07690 Major Facilitator Superfamily HW988_RS04750 PF08245 Mur ligase middle domain HW988_RS04750 PF02875 Mur ligase family, glutamate ligase domain HW988_RS04775 PF01979 Amidohydrolase family HW988_RS04780 PF03616 Sodium/glutamate symporter HW988_RS04790 PF02321 Outer membrane efflux protein HW988_RS04800 PF00873 AcrB/AcrD/AcrF family HW988_RS04805 PF00873 AcrB/AcrD/AcrF family HW988_RS04825 PF01627 Hpt domain HW988_RS04825 PF00072 Response regulator receiver domain HW988_RS04825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS04825 PF00497 Bacterial extracellular solute-binding proteins, family 3 HW988_RS04825 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS04830 PF01739 CheR methyltransferase, SAM binding domain HW988_RS04830 PF03705 CheR methyltransferase, all-alpha domain HW988_RS04835 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS04835 PF09308 LuxQ, periplasmic HW988_RS04835 PF00072 Response regulator receiver domain HW988_RS04835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS04855 PF00857 Isochorismatase family HW988_RS04860 PF00849 RNA pseudouridylate synthase HW988_RS04860 PF04287 tRNA pseudouridine synthase C HW988_RS04885 PF08021 Siderophore-interacting FAD-binding domain HW988_RS04885 PF04954 Siderophore-interacting protein HW988_RS04895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS04900 PF06029 AlkA N-terminal domain HW988_RS04900 PF02805 Metal binding domain of Ada HW988_RS04900 PF00730 HhH-GPD superfamily base excision DNA repair protein HW988_RS04900 PF12833 Helix-turn-helix domain HW988_RS04905 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HW988_RS04905 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HW988_RS04925 PF00149 Calcineurin-like phosphoesterase HW988_RS04960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS04960 PF03466 LysR substrate binding domain HW988_RS04965 PF08240 Alcohol dehydrogenase GroES-like domain HW988_RS04965 PF00107 Zinc-binding dehydrogenase HW988_RS04970 PF00248 Aldo/keto reductase family HW988_RS04980 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HW988_RS04985 PF00999 Sodium/hydrogen exchanger family HW988_RS05025 PF00698 Acyl transferase domain HW988_RS05035 PF13614 AAA domain HW988_RS05075 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS05075 PF00989 PAS fold HW988_RS05075 PF00672 HAMP domain HW988_RS05075 PF18698 Histidine kinase sensor domain HW988_RS05075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS05080 PF00689 Cation transporting ATPase, C-terminus HW988_RS05080 PF00690 Cation transporter/ATPase, N-terminus HW988_RS05085 PF01590 GAF domain HW988_RS05085 PF00158 Sigma-54 interaction domain HW988_RS05090 PF00011 Hsp20/alpha crystallin family HW988_RS05095 PF00156 Phosphoribosyl transferase domain HW988_RS05095 PF01738 Dienelactone hydrolase family HW988_RS05105 PF10996 Beta-Casp domain HW988_RS05105 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HW988_RS05105 PF00753 Metallo-beta-lactamase superfamily HW988_RS05115 PF12900 Pyridoxamine 5'-phosphate oxidase HW988_RS05130 PF00294 pfkB family carbohydrate kinase HW988_RS05135 PF08212 Lipocalin-like domain HW988_RS05140 PF08212 Lipocalin-like domain HW988_RS05200 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HW988_RS05200 PF00072 Response regulator receiver domain HW988_RS05200 PF01627 Hpt domain HW988_RS05200 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS05200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS05200 PF00672 HAMP domain HW988_RS05205 PF06745 KaiC HW988_RS05220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS05220 PF03466 LysR substrate binding domain HW988_RS05240 PF04389 Peptidase family M28 HW988_RS05255 PF02463 RecF/RecN/SMC N terminal domain HW988_RS05275 PF04026 SpoVG HW988_RS05285 PF00672 HAMP domain HW988_RS05285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS05285 PF02203 Tar ligand binding domain homologue HW988_RS05300 PF13180 PDZ domain HW988_RS05310 PF01435 Peptidase family M48 HW988_RS05315 PF17863 AAA lid domain HW988_RS05315 PF07726 ATPase family associated with various cellular activities (AAA) HW988_RS05335 PF07584 Aerotolerance regulator N-terminal HW988_RS05335 PF13519 von Willebrand factor type A domain HW988_RS05380 PF02146 Sir2 family HW988_RS05385 PF00694 Aconitase C-terminal domain HW988_RS05385 PF00330 Aconitase family (aconitate hydratase) HW988_RS05405 PF04304 Protein of unknown function (DUF454) HW988_RS05420 PF09587 Bacterial capsule synthesis protein PGA_cap HW988_RS05455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HW988_RS05460 PF00691 OmpA family HW988_RS05480 PF03741 Integral membrane protein TerC family HW988_RS05510 PF02203 Tar ligand binding domain homologue HW988_RS05510 PF00672 HAMP domain HW988_RS05510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS05525 PF02237 Biotin protein ligase C terminal domain HW988_RS05525 PF03099 Biotin/lipoate A/B protein ligase family HW988_RS05525 PF08279 HTH domain HW988_RS05530 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HW988_RS05530 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HW988_RS05535 PF01584 CheW-like domain HW988_RS05535 PF00072 Response regulator receiver domain HW988_RS05545 PF01327 Polypeptide deformylase HW988_RS05550 PF00551 Formyl transferase HW988_RS05550 PF02911 Formyl transferase, C-terminal domain HW988_RS05555 PF00834 Ribulose-phosphate 3 epimerase family HW988_RS05565 PF00293 NUDIX domain HW988_RS05575 PF00221 Aromatic amino acid lyase HW988_RS05590 PF09008 Head binding HW988_RS05600 PF17392 Urocanase C-terminal domain HW988_RS05600 PF17391 Urocanase N-terminal domain HW988_RS05600 PF01175 Urocanase Rossmann-like domain HW988_RS05610 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS05615 PF00005 ABC transporter HW988_RS05705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HW988_RS05705 PF07992 Pyridine nucleotide-disulphide oxidoreductase HW988_RS05710 PF03551 Transcriptional regulator PadR-like family HW988_RS05730 PF00106 short chain dehydrogenase HW988_RS05740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS05740 PF03466 LysR substrate binding domain HW988_RS05750 PF00364 Biotin-requiring enzyme HW988_RS05750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HW988_RS05750 PF02817 e3 binding domain HW988_RS05755 PF16078 2-oxoglutarate dehydrogenase N-terminus HW988_RS05755 PF00676 Dehydrogenase E1 component HW988_RS05755 PF02779 Transketolase, pyrimidine binding domain HW988_RS05755 PF16870 2-oxoglutarate dehydrogenase C-terminal HW988_RS05760 PF00300 Histidine phosphatase superfamily (branch 1) HW988_RS05765 PF00011 Hsp20/alpha crystallin family HW988_RS05780 PF14602 Hexapeptide repeat of succinyl-transferase HW988_RS05780 PF12464 Maltose acetyltransferase HW988_RS05785 PF01979 Amidohydrolase family HW988_RS05805 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HW988_RS05805 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HW988_RS05815 PF01566 Natural resistance-associated macrophage protein HW988_RS05825 PF18073 Rubredoxin metal binding domain HW988_RS05830 PF14718 Soluble lytic murein transglycosylase L domain HW988_RS05830 PF01464 Transglycosylase SLT domain HW988_RS05835 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS05840 PF12911 N-terminal TM domain of oligopeptide transport permease C HW988_RS05840 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS05850 PF03502 Nucleoside-specific channel-forming protein, Tsx HW988_RS05855 PF01926 50S ribosome-binding GTPase HW988_RS05855 PF06071 Protein of unknown function (DUF933) HW988_RS05860 PF01195 Peptidyl-tRNA hydrolase HW988_RS05865 PF14693 Ribosomal protein TL5, C-terminal domain HW988_RS05865 PF01386 Ribosomal L25p family HW988_RS05870 PF14572 Phosphoribosyl synthetase-associated domain HW988_RS05870 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HW988_RS05880 PF01725 Ham1 family HW988_RS05885 PF01138 3' exoribonuclease family, domain 1 HW988_RS05885 PF03725 3' exoribonuclease family, domain 2 HW988_RS05890 PF11741 AMIN domain HW988_RS05890 PF01520 N-acetylmuramoyl-L-alanine amidase HW988_RS05905 PF00574 Clp protease HW988_RS05910 PF00924 Mechanosensitive ion channel HW988_RS05915 PF02673 Bacitracin resistance protein BacA HW988_RS05920 PF00082 Subtilase family HW988_RS05930 PF00378 Enoyl-CoA hydratase/isomerase HW988_RS05945 PF04279 Intracellular septation protein A HW988_RS05950 PF01979 Amidohydrolase family HW988_RS05970 PF07681 DoxX HW988_RS05980 PF03193 RsgA GTPase HW988_RS06000 PF13302 Acetyltransferase (GNAT) domain HW988_RS06060 PF07690 Major Facilitator Superfamily HW988_RS06065 PF01872 RibD C-terminal domain HW988_RS06090 PF05987 Bacterial protein of unknown function (DUF898) HW988_RS06095 PF01435 Peptidase family M48 HW988_RS06100 PF06224 Winged helix DNA-binding domain HW988_RS06130 PF13417 Glutathione S-transferase, N-terminal domain HW988_RS06130 PF00043 Glutathione S-transferase, C-terminal domain HW988_RS06185 PF00296 Luciferase-like monooxygenase HW988_RS06190 PF13673 Acetyltransferase (GNAT) domain HW988_RS06190 PF03352 Methyladenine glycosylase HW988_RS06190 PF13302 Acetyltransferase (GNAT) domain HW988_RS06190 PF00117 Glutamine amidotransferase class-I HW988_RS06190 PF00958 GMP synthase C terminal domain HW988_RS06215 PF00132 Bacterial transferase hexapeptide (six repeats) HW988_RS06240 PF00012 Hsp70 protein HW988_RS06245 PF13545 Crp-like helix-turn-helix domain HW988_RS06245 PF00027 Cyclic nucleotide-binding domain HW988_RS06250 PF00753 Metallo-beta-lactamase superfamily HW988_RS06255 PF00581 Rhodanese-like domain HW988_RS06260 PF04143 Sulphur transport HW988_RS06270 PF01925 Sulfite exporter TauE/SafE HW988_RS06275 PF16177 Acetyl-coenzyme A synthetase N-terminus HW988_RS06275 PF13193 AMP-binding enzyme C-terminal domain HW988_RS06275 PF00501 AMP-binding enzyme HW988_RS06285 PF01207 Dihydrouridine synthase (Dus) HW988_RS06325 PF02321 Outer membrane efflux protein HW988_RS06330 PF00529 HlyD membrane-fusion protein of T1SS HW988_RS06330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HW988_RS06335 PF00005 ABC transporter HW988_RS06335 PF02687 FtsX-like permease family HW988_RS06335 PF12704 MacB-like periplasmic core domain HW988_RS06340 PF01207 Dihydrouridine synthase (Dus) HW988_RS06350 PF02810 SEC-C motif HW988_RS06355 PF00106 short chain dehydrogenase HW988_RS06360 PF00206 Lyase HW988_RS06360 PF10415 Fumarase C C-terminus HW988_RS06375 PF00580 UvrD/REP helicase N-terminal domain HW988_RS06375 PF13361 UvrD-like helicase C-terminal domain HW988_RS06380 PF00849 RNA pseudouridylate synthase HW988_RS06400 PF01722 BolA-like protein HW988_RS06420 PF12848 ABC transporter HW988_RS06420 PF00005 ABC transporter HW988_RS06425 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS06425 PF09308 LuxQ, periplasmic HW988_RS06425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS06425 PF00072 Response regulator receiver domain HW988_RS06440 PF00557 Metallopeptidase family M24 HW988_RS06445 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HW988_RS06445 PF05221 S-adenosyl-L-homocysteine hydrolase HW988_RS06475 PF05532 CsbD-like HW988_RS06485 PF02954 Bacterial regulatory protein, Fis family HW988_RS06485 PF00072 Response regulator receiver domain HW988_RS06485 PF00158 Sigma-54 interaction domain HW988_RS06495 PF00929 Exonuclease HW988_RS06500 PF00072 Response regulator receiver domain HW988_RS06500 PF00486 Transcriptional regulatory protein, C terminal HW988_RS06525 PF08007 Cupin superfamily protein HW988_RS06535 PF00255 Glutathione peroxidase HW988_RS06545 PF05199 GMC oxidoreductase HW988_RS06560 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS06560 PF18415 Histidine kinase receptor ArcB trans-membrane domain HW988_RS06560 PF00072 Response regulator receiver domain HW988_RS06560 PF01627 Hpt domain HW988_RS06560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS06560 PF00989 PAS fold HW988_RS06595 PF00056 lactate/malate dehydrogenase, NAD binding domain HW988_RS06595 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HW988_RS06600 PF08308 PEGA domain HW988_RS06600 PF00069 Protein kinase domain HW988_RS06615 PF07687 Peptidase dimerisation domain HW988_RS06615 PF01546 Peptidase family M20/M25/M40 HW988_RS06630 PF00082 Subtilase family HW988_RS06630 PF05922 Peptidase inhibitor I9 HW988_RS06645 PF00484 Carbonic anhydrase HW988_RS06660 PF00942 Cellulose binding domain HW988_RS06660 PF00150 Cellulase (glycosyl hydrolase family 5) HW988_RS06660 PF12891 Glycoside hydrolase family 44 HW988_RS06665 PF01641 SelR domain HW988_RS06675 PF03976 Polyphosphate kinase 2 (PPK2) HW988_RS06685 PF02203 Tar ligand binding domain homologue HW988_RS06685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS06685 PF00672 HAMP domain HW988_RS06705 PF04972 BON domain HW988_RS06705 PF00691 OmpA family HW988_RS06720 PF10672 S-adenosylmethionine-dependent methyltransferase HW988_RS06720 PF17785 PUA-like domain HW988_RS06730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS06730 PF02203 Tar ligand binding domain homologue HW988_RS06730 PF00672 HAMP domain HW988_RS06735 PF12392 Collagenase HW988_RS06735 PF01136 Peptidase family U32 HW988_RS06745 PF02203 Tar ligand binding domain homologue HW988_RS06745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS06745 PF00672 HAMP domain HW988_RS06750 PF00271 Helicase conserved C-terminal domain HW988_RS06750 PF00270 DEAD/DEAH box helicase HW988_RS06770 PF01272 Transcription elongation factor, GreA/GreB, C-term HW988_RS06770 PF14760 Rnk N-terminus HW988_RS06785 PF01625 Peptide methionine sulfoxide reductase HW988_RS06810 PF03734 L,D-transpeptidase catalytic domain HW988_RS06830 PF00150 Cellulase (glycosyl hydrolase family 5) HW988_RS06830 PF00942 Cellulose binding domain HW988_RS06830 PF12891 Glycoside hydrolase family 44 HW988_RS06860 PF00390 Malic enzyme, N-terminal domain HW988_RS06860 PF03949 Malic enzyme, NAD binding domain HW988_RS06870 PF01053 Cys/Met metabolism PLP-dependent enzyme HW988_RS06880 PF14863 Alkyl sulfatase dimerisation HW988_RS06880 PF14864 Alkyl sulfatase C-terminal HW988_RS06880 PF00753 Metallo-beta-lactamase superfamily HW988_RS06885 PF04434 SWIM zinc finger HW988_RS06885 PF00176 SNF2 family N-terminal domain HW988_RS06885 PF00271 Helicase conserved C-terminal domain HW988_RS06890 PF00271 Helicase conserved C-terminal domain HW988_RS06890 PF00270 DEAD/DEAH box helicase HW988_RS06890 PF03880 DbpA RNA binding domain HW988_RS06905 PF10437 Bacterial lipoate protein ligase C-terminus HW988_RS06905 PF03099 Biotin/lipoate A/B protein ligase family HW988_RS06965 PF00270 DEAD/DEAH box helicase HW988_RS06965 PF00271 Helicase conserved C-terminal domain HW988_RS06970 PF00005 ABC transporter HW988_RS06970 PF12848 ABC transporter HW988_RS06970 PF16326 ABC transporter C-terminal domain HW988_RS06985 PF11700 Vacuole effluxer Atg22 like HW988_RS06995 PF01728 FtsJ-like methyltransferase HW988_RS07000 PF00849 RNA pseudouridylate synthase HW988_RS07025 PF01966 HD domain HW988_RS07045 PF00082 Subtilase family HW988_RS07050 PF13185 GAF domain HW988_RS07055 PF00072 Response regulator receiver domain HW988_RS07055 PF00990 Diguanylate cyclase, GGDEF domain HW988_RS07060 PF14759 Reductase C-terminal HW988_RS07060 PF07992 Pyridine nucleotide-disulphide oxidoreductase HW988_RS07065 PF03976 Polyphosphate kinase 2 (PPK2) HW988_RS07070 PF02566 OsmC-like protein HW988_RS07080 PF00989 PAS fold HW988_RS07080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS07080 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS07095 PF08446 PAS fold HW988_RS07095 PF01590 GAF domain HW988_RS07095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS07095 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS07095 PF00360 Phytochrome region HW988_RS07100 PF00072 Response regulator receiver domain HW988_RS07105 PF00672 HAMP domain HW988_RS07105 PF18698 Histidine kinase sensor domain HW988_RS07105 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS07105 PF00989 PAS fold HW988_RS07105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS07110 PF00072 Response regulator receiver domain HW988_RS07110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS07110 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS07110 PF00989 PAS fold HW988_RS07110 PF01627 Hpt domain HW988_RS07110 PF18415 Histidine kinase receptor ArcB trans-membrane domain HW988_RS07115 PF01914 MarC family integral membrane protein HW988_RS07120 PF01979 Amidohydrolase family HW988_RS07120 PF13382 Adenine deaminase C-terminal domain HW988_RS07135 PF00561 alpha/beta hydrolase fold HW988_RS07165 PF00709 Adenylosuccinate synthetase HW988_RS07170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HW988_RS07170 PF01842 ACT domain HW988_RS07170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HW988_RS07175 PF00266 Aminotransferase class-V HW988_RS07185 PF06144 DNA polymerase III, delta subunit HW988_RS07205 PF01649 Ribosomal protein S20 HW988_RS07210 PF03023 Lipid II flippase MurJ HW988_RS07215 PF00672 HAMP domain HW988_RS07215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS07215 PF02203 Tar ligand binding domain homologue HW988_RS07220 PF00672 HAMP domain HW988_RS07220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS07220 PF02203 Tar ligand binding domain homologue HW988_RS07225 PF00672 HAMP domain HW988_RS07225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS07225 PF02203 Tar ligand binding domain homologue HW988_RS07270 PF01618 MotA/TolQ/ExbB proton channel family HW988_RS07290 PF03819 MazG nucleotide pyrophosphohydrolase domain HW988_RS07295 PF07697 7TM-HD extracellular HW988_RS07295 PF01966 HD domain HW988_RS07295 PF07698 7TM receptor with intracellular HD hydrolase HW988_RS07300 PF02130 Uncharacterized protein family UPF0054 HW988_RS07305 PF00472 RF-1 domain HW988_RS07305 PF03462 PCRF domain HW988_RS07310 PF02687 FtsX-like permease family HW988_RS07310 PF12704 MacB-like periplasmic core domain HW988_RS07315 PF00005 ABC transporter HW988_RS07325 PF07244 Surface antigen variable number repeat HW988_RS07325 PF01103 Surface antigen HW988_RS07335 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HW988_RS07335 PF00132 Bacterial transferase hexapeptide (six repeats) HW988_RS07345 PF02684 Lipid-A-disaccharide synthetase HW988_RS07350 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HW988_RS07355 PF03279 Bacterial lipid A biosynthesis acyltransferase HW988_RS07380 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HW988_RS07385 PF00158 Sigma-54 interaction domain HW988_RS07385 PF02954 Bacterial regulatory protein, Fis family HW988_RS07385 PF00072 Response regulator receiver domain HW988_RS07390 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS07390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS07395 PF01687 Riboflavin kinase HW988_RS07395 PF06574 FAD synthetase HW988_RS07405 PF00437 Type II/IV secretion system protein HW988_RS07405 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HW988_RS07415 PF00482 Type II secretion system (T2SS), protein F HW988_RS07420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS07420 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS07420 PF00989 PAS fold HW988_RS07425 PF02954 Bacterial regulatory protein, Fis family HW988_RS07425 PF00072 Response regulator receiver domain HW988_RS07425 PF00158 Sigma-54 interaction domain HW988_RS07440 PF01738 Dienelactone hydrolase family HW988_RS07480 PF00082 Subtilase family HW988_RS07480 PF05922 Peptidase inhibitor I9 HW988_RS07495 PF00849 RNA pseudouridylate synthase HW988_RS07580 PF02576 RimP N-terminal domain HW988_RS07580 PF17384 RimP C-terminal SH3 domain HW988_RS07585 PF00575 S1 RNA binding domain HW988_RS07585 PF08529 NusA N-terminal domain HW988_RS07585 PF13184 NusA-like KH domain HW988_RS07590 PF11987 Translation-initiation factor 2 HW988_RS07590 PF04760 Translation initiation factor IF-2, N-terminal region HW988_RS07590 PF00009 Elongation factor Tu GTP binding domain HW988_RS07595 PF02033 Ribosome-binding factor A HW988_RS07600 PF16198 tRNA pseudouridylate synthase B C-terminal domain HW988_RS07600 PF01509 TruB family pseudouridylate synthase (N terminal domain) HW988_RS07605 PF00312 Ribosomal protein S15 HW988_RS07610 PF00575 S1 RNA binding domain HW988_RS07610 PF03725 3' exoribonuclease family, domain 2 HW988_RS07610 PF01138 3' exoribonuclease family, domain 1 HW988_RS07610 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HW988_RS07610 PF00013 KH domain HW988_RS07615 PF05193 Peptidase M16 inactive domain HW988_RS07615 PF00675 Insulinase (Peptidase family M16) HW988_RS07620 PF00692 dUTPase HW988_RS07650 PF00535 Glycosyl transferase family 2 HW988_RS07665 PF08676 MutL C terminal dimerisation domain HW988_RS07665 PF01119 DNA mismatch repair protein, C-terminal domain HW988_RS07675 PF03755 YicC-like family, N-terminal region HW988_RS07675 PF08340 Domain of unknown function (DUF1732) HW988_RS07680 PF00625 Guanylate kinase HW988_RS07685 PF01192 RNA polymerase Rpb6 HW988_RS07690 PF02824 TGS domain HW988_RS07690 PF04607 Region found in RelA / SpoT proteins HW988_RS07690 PF13291 ACT domain HW988_RS07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS07695 PF00989 PAS fold HW988_RS07695 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS07715 PF00436 Single-strand binding protein family HW988_RS07755 PF08334 Type II secretion system (T2SS), protein G HW988_RS07760 PF00482 Type II secretion system (T2SS), protein F HW988_RS07765 PF00437 Type II/IV secretion system protein HW988_RS07770 PF00263 Bacterial type II and III secretion system protein HW988_RS07770 PF03958 Bacterial type II/III secretion system short domain HW988_RS07805 PF00156 Phosphoribosyl transferase domain HW988_RS07810 PF00731 AIR carboxylase HW988_RS07820 PF02843 Phosphoribosylglycinamide synthetase, C domain HW988_RS07820 PF02844 Phosphoribosylglycinamide synthetase, N domain HW988_RS07820 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HW988_RS07825 PF00551 Formyl transferase HW988_RS07830 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HW988_RS07830 PF00586 AIR synthase related protein, N-terminal domain HW988_RS07830 PF02769 AIR synthase related protein, C-terminal domain HW988_RS07840 PF02142 MGS-like domain HW988_RS07840 PF01808 AICARFT/IMPCHase bienzyme HW988_RS07845 PF00586 AIR synthase related protein, N-terminal domain HW988_RS07845 PF02769 AIR synthase related protein, C-terminal domain HW988_RS07880 PF01923 Cobalamin adenosyltransferase HW988_RS07890 PF01578 Cytochrome C assembly protein HW988_RS07890 PF05140 ResB-like family HW988_RS07895 PF05140 ResB-like family HW988_RS07895 PF01578 Cytochrome C assembly protein HW988_RS07905 PF00037 4Fe-4S binding domain HW988_RS07905 PF13247 4Fe-4S dicluster domain HW988_RS07945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HW988_RS07945 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HW988_RS07945 PF03129 Anticodon binding domain HW988_RS07945 PF02824 TGS domain HW988_RS07950 PF00707 Translation initiation factor IF-3, C-terminal domain HW988_RS07950 PF05198 Translation initiation factor IF-3, N-terminal domain HW988_RS07965 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HW988_RS07965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HW988_RS07970 PF00893 Small Multidrug Resistance protein HW988_RS07975 PF03009 Glycerophosphoryl diester phosphodiesterase family HW988_RS07995 PF01632 Ribosomal protein L35 HW988_RS08000 PF00453 Ribosomal protein L20 HW988_RS08005 PF01070 FMN-dependent dehydrogenase HW988_RS08010 PF00368 Hydroxymethylglutaryl-coenzyme A reductase HW988_RS08040 PF00005 ABC transporter HW988_RS08060 PF03572 Peptidase family S41 HW988_RS08075 PF02527 rRNA small subunit methyltransferase G HW988_RS08075 PF00588 SpoU rRNA Methylase family HW988_RS08080 PF02527 rRNA small subunit methyltransferase G HW988_RS08085 PF02667 Short chain fatty acid transporter HW988_RS08095 PF01409 tRNA synthetases class II core domain (F) HW988_RS08095 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HW988_RS08100 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HW988_RS08100 PF03483 B3/4 domain HW988_RS08100 PF03147 Ferredoxin-fold anticodon binding domain HW988_RS08100 PF03484 tRNA synthetase B5 domain HW988_RS08100 PF01588 Putative tRNA binding domain HW988_RS08105 PF00216 Bacterial DNA-binding protein HW988_RS08115 PF00892 EamA-like transporter family HW988_RS08170 PF00793 DAHP synthetase I family HW988_RS08205 PF06594 Haemolysin-type calcium binding protein related domain HW988_RS08205 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) HW988_RS08245 PF02547 Queuosine biosynthesis protein HW988_RS08250 PF01702 Queuine tRNA-ribosyltransferase HW988_RS08255 PF02699 Preprotein translocase subunit HW988_RS08260 PF07549 SecD/SecF GG Motif HW988_RS08260 PF02355 Protein export membrane protein HW988_RS08265 PF02355 Protein export membrane protein HW988_RS08265 PF07549 SecD/SecF GG Motif HW988_RS08270 PF17768 RecJ OB domain HW988_RS08270 PF01368 DHH family HW988_RS08270 PF02272 DHHA1 domain HW988_RS08275 PF06508 Queuosine biosynthesis protein QueC HW988_RS08295 PF00403 Heavy-metal-associated domain HW988_RS08310 PF02690 Na+/Pi-cotransporter HW988_RS08315 PF00293 NUDIX domain HW988_RS08325 PF05362 Lon protease (S16) C-terminal proteolytic domain HW988_RS08325 PF02190 ATP-dependent protease La (LON) substrate-binding domain HW988_RS08325 PF00004 ATPase family associated with various cellular activities (AAA) HW988_RS08330 PF02628 Cytochrome oxidase assembly protein HW988_RS08330 PF01040 UbiA prenyltransferase family HW988_RS08335 PF01545 Cation efflux family HW988_RS08335 PF16916 Dimerisation domain of Zinc Transporter HW988_RS08380 PF00578 AhpC/TSA family HW988_RS08385 PF03109 ABC1 family HW988_RS08390 PF03441 FAD binding domain of DNA photolyase HW988_RS08390 PF00875 DNA photolyase HW988_RS08395 PF08338 Domain of unknown function (DUF1731) HW988_RS08395 PF01370 NAD dependent epimerase/dehydratase family HW988_RS08405 PF01979 Amidohydrolase family HW988_RS08405 PF13382 Adenine deaminase C-terminal domain HW988_RS08415 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HW988_RS08415 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HW988_RS08420 PF03450 CO dehydrogenase flavoprotein C-terminal domain HW988_RS08420 PF00941 FAD binding domain in molybdopterin dehydrogenase HW988_RS08435 PF01475 Ferric uptake regulator family HW988_RS08445 PF00300 Histidine phosphatase superfamily (branch 1) HW988_RS08450 PF08448 PAS fold HW988_RS08450 PF08447 PAS fold HW988_RS08450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS08455 PF12849 PBP superfamily domain HW988_RS08460 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS08465 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS08470 PF00005 ABC transporter HW988_RS08490 PF13632 Glycosyl transferase family group 2 HW988_RS08490 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HW988_RS08505 PF16363 GDP-mannose 4,6 dehydratase HW988_RS08515 PF00535 Glycosyl transferase family 2 HW988_RS08520 PF01757 Acyltransferase family HW988_RS08535 PF16363 GDP-mannose 4,6 dehydratase HW988_RS08540 PF00483 Nucleotidyl transferase HW988_RS08555 PF00534 Glycosyl transferases group 1 HW988_RS08575 PF00106 short chain dehydrogenase HW988_RS08580 PF04030 D-arabinono-1,4-lactone oxidase HW988_RS08580 PF01565 FAD binding domain HW988_RS08585 PF01040 UbiA prenyltransferase family HW988_RS08600 PF02911 Formyl transferase, C-terminal domain HW988_RS08600 PF00551 Formyl transferase HW988_RS08640 PF13419 Haloacid dehalogenase-like hydrolase HW988_RS08665 PF01757 Acyltransferase family HW988_RS08670 PF04321 RmlD substrate binding domain HW988_RS08675 PF08485 Polysaccharide biosynthesis protein C-terminal HW988_RS08675 PF02719 Polysaccharide biosynthesis protein HW988_RS08680 PF02350 UDP-N-acetylglucosamine 2-epimerase HW988_RS08700 PF00953 Glycosyl transferase family 4 HW988_RS08720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HW988_RS08720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HW988_RS08720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HW988_RS08720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HW988_RS08730 PF00291 Pyridoxal-phosphate dependent enzyme HW988_RS08735 PF03372 Endonuclease/Exonuclease/phosphatase family HW988_RS08775 PF03030 Inorganic H+ pyrophosphatase HW988_RS08785 PF06055 Exopolysaccharide synthesis, ExoD HW988_RS08795 PF01980 tRNA-methyltransferase O HW988_RS08795 PF18389 TrmO C-terminal domain HW988_RS08805 PF08264 Anticodon-binding domain of tRNA HW988_RS08805 PF01588 Putative tRNA binding domain HW988_RS08805 PF09334 tRNA synthetases class I (M) HW988_RS08810 PF00484 Carbonic anhydrase HW988_RS08815 PF01063 Amino-transferase class IV HW988_RS08830 PF00535 Glycosyl transferase family 2 HW988_RS08870 PF12146 Serine aminopeptidase, S33 HW988_RS08940 PF00893 Small Multidrug Resistance protein HW988_RS08945 PF03358 NADPH-dependent FMN reductase HW988_RS08950 PF03814 Potassium-transporting ATPase A subunit HW988_RS08960 PF02669 K+-transporting ATPase, c chain HW988_RS08965 PF13492 GAF domain HW988_RS08965 PF13493 Domain of unknown function (DUF4118) HW988_RS08965 PF02702 Osmosensitive K+ channel His kinase sensor domain HW988_RS08965 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS08965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS08970 PF00486 Transcriptional regulatory protein, C terminal HW988_RS08970 PF00072 Response regulator receiver domain HW988_RS08990 PF01042 Endoribonuclease L-PSP HW988_RS09000 PF02405 Permease MlaE HW988_RS09005 PF00005 ABC transporter HW988_RS09005 PF09383 NIL domain HW988_RS09015 PF12704 MacB-like periplasmic core domain HW988_RS09015 PF02687 FtsX-like permease family HW988_RS09020 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HW988_RS09020 PF00132 Bacterial transferase hexapeptide (six repeats) HW988_RS09020 PF14602 Hexapeptide repeat of succinyl-transferase HW988_RS09025 PF00246 Zinc carboxypeptidase HW988_RS09030 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HW988_RS09030 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HW988_RS09035 PF01177 Asp/Glu/Hydantoin racemase HW988_RS09040 PF00478 IMP dehydrogenase / GMP reductase domain HW988_RS09040 PF00571 CBS domain HW988_RS09060 PF01594 AI-2E family transporter HW988_RS09100 PF00009 Elongation factor Tu GTP binding domain HW988_RS09100 PF03144 Elongation factor Tu domain 2 HW988_RS09100 PF16658 Class II release factor RF3, C-terminal domain HW988_RS09105 PF00005 ABC transporter HW988_RS09110 PF01061 ABC-2 type transporter HW988_RS09115 PF02881 SRP54-type protein, helical bundle domain HW988_RS09115 PF02978 Signal peptide binding domain HW988_RS09115 PF00448 SRP54-type protein, GTPase domain HW988_RS09120 PF00886 Ribosomal protein S16 HW988_RS09130 PF01782 RimM N-terminal domain HW988_RS09135 PF01746 tRNA (Guanine-1)-methyltransferase HW988_RS09140 PF09936 SAM-dependent RNA methyltransferase HW988_RS09140 PF01746 tRNA (Guanine-1)-methyltransferase HW988_RS09145 PF01245 Ribosomal protein L19 HW988_RS09150 PF01351 Ribonuclease HII HW988_RS09160 PF04453 LPS transport system D HW988_RS09160 PF03968 OstA-like protein HW988_RS09195 PF00216 Bacterial DNA-binding protein HW988_RS09220 PF00391 PEP-utilising enzyme, mobile domain HW988_RS09220 PF00224 Pyruvate kinase, barrel domain HW988_RS09220 PF02887 Pyruvate kinase, alpha/beta domain HW988_RS09225 PF00027 Cyclic nucleotide-binding domain HW988_RS09225 PF04960 Glutaminase HW988_RS09230 PF01144 Coenzyme A transferase HW988_RS09235 PF01144 Coenzyme A transferase HW988_RS09240 PF00108 Thiolase, N-terminal domain HW988_RS09240 PF02803 Thiolase, C-terminal domain HW988_RS09270 PF01938 TRAM domain HW988_RS09270 PF04055 Radical SAM superfamily HW988_RS09270 PF00919 Uncharacterized protein family UPF0004 HW988_RS09280 PF02254 TrkA-N domain HW988_RS09280 PF00999 Sodium/hydrogen exchanger family HW988_RS09285 PF03781 Sulfatase-modifying factor enzyme 1 HW988_RS09290 PF00132 Bacterial transferase hexapeptide (six repeats) HW988_RS09295 PF00571 CBS domain HW988_RS09295 PF00478 IMP dehydrogenase / GMP reductase domain HW988_RS09300 PF00117 Glutamine amidotransferase class-I HW988_RS09300 PF02540 NAD synthase HW988_RS09300 PF00958 GMP synthase C terminal domain HW988_RS09330 PF07733 Bacterial DNA polymerase III alpha NTPase domain HW988_RS09330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HW988_RS09330 PF14579 Helix-hairpin-helix motif HW988_RS09330 PF02811 PHP domain HW988_RS09350 PF01336 OB-fold nucleic acid binding domain HW988_RS09350 PF00152 tRNA synthetases class II (D, K and N) HW988_RS09355 PF06736 Protein of unknown function (DUF1211) HW988_RS09370 PF02798 Glutathione S-transferase, N-terminal domain HW988_RS09375 PF01171 PP-loop family HW988_RS09390 PF03734 L,D-transpeptidase catalytic domain HW988_RS09405 PF05958 tRNA (Uracil-5-)-methyltransferase HW988_RS09415 PF17820 PDZ domain HW988_RS09415 PF13180 PDZ domain HW988_RS09485 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HW988_RS09485 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HW988_RS09495 PF05746 DALR anticodon binding domain HW988_RS09495 PF00750 tRNA synthetases class I (R) HW988_RS09495 PF03485 Arginyl tRNA synthetase N terminal domain HW988_RS09505 PF18644 Phage integrase SAM-like domain HW988_RS09505 PF00589 Phage integrase family HW988_RS09520 PF00005 ABC transporter HW988_RS09525 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS09540 PF01783 Ribosomal L32p protein family HW988_RS09545 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HW988_RS09545 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HW988_RS09550 PF00698 Acyl transferase domain HW988_RS09560 PF00550 Phosphopantetheine attachment site HW988_RS09565 PF02801 Beta-ketoacyl synthase, C-terminal domain HW988_RS09565 PF00109 Beta-ketoacyl synthase, N-terminal domain HW988_RS09570 PF02502 Ribose/Galactose Isomerase HW988_RS09575 PF00464 Serine hydroxymethyltransferase HW988_RS09580 PF01476 LysM domain HW988_RS09580 PF01551 Peptidase family M23 HW988_RS09600 PF02705 K+ potassium transporter HW988_RS09610 PF03358 NADPH-dependent FMN reductase HW988_RS09625 PF01618 MotA/TolQ/ExbB proton channel family HW988_RS09630 PF02472 Biopolymer transport protein ExbD/TolR HW988_RS09685 PF16199 Radical_SAM C-terminal domain HW988_RS09685 PF04055 Radical SAM superfamily HW988_RS09690 PF02867 Ribonucleotide reductase, barrel domain HW988_RS09690 PF03477 ATP cone domain HW988_RS09690 PF00317 Ribonucleotide reductase, all-alpha domain HW988_RS09695 PF00268 Ribonucleotide reductase, small chain HW988_RS09720 PF04079 Segregation and condensation complex subunit ScpB HW988_RS09725 PF02616 Segregation and condensation protein ScpA HW988_RS09730 PF02163 Peptidase family M50 HW988_RS09735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HW988_RS09735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HW988_RS09735 PF02770 Acyl-CoA dehydrogenase, middle domain HW988_RS09740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HW988_RS09745 PF00563 EAL domain HW988_RS09745 PF00498 FHA domain HW988_RS09745 PF00990 Diguanylate cyclase, GGDEF domain HW988_RS09760 PF03051 Peptidase C1-like family HW988_RS09775 PF00849 RNA pseudouridylate synthase HW988_RS09775 PF01479 S4 domain HW988_RS09810 PF01709 Transcriptional regulator HW988_RS09820 PF02657 Fe-S metabolism associated domain HW988_RS09845 PF07690 Major Facilitator Superfamily HW988_RS09855 PF01966 HD domain HW988_RS09855 PF08335 GlnD PII-uridylyltransferase HW988_RS09855 PF01909 Nucleotidyltransferase domain HW988_RS09860 PF00488 MutS domain V HW988_RS09860 PF05190 MutS family domain IV HW988_RS09860 PF01624 MutS domain I HW988_RS09860 PF05188 MutS domain II HW988_RS09860 PF05192 MutS domain III HW988_RS09870 PF02203 Tar ligand binding domain homologue HW988_RS09870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS09870 PF00672 HAMP domain HW988_RS09875 PF00486 Transcriptional regulatory protein, C terminal HW988_RS09875 PF00072 Response regulator receiver domain HW988_RS09895 PF01225 Mur ligase family, catalytic domain HW988_RS09895 PF02875 Mur ligase family, glutamate ligase domain HW988_RS09895 PF08245 Mur ligase middle domain HW988_RS09900 PF00144 Beta-lactamase HW988_RS09905 PF17676 LD-carboxypeptidase C-terminal domain HW988_RS09905 PF02016 LD-carboxypeptidase N-terminal domain HW988_RS09910 PF00206 Lyase HW988_RS09910 PF10397 Adenylosuccinate lyase C-terminus HW988_RS09920 PF00255 Glutathione peroxidase HW988_RS09930 PF00209 Sodium:neurotransmitter symporter family HW988_RS09935 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HW988_RS09935 PF01926 50S ribosome-binding GTPase HW988_RS09940 PF01926 50S ribosome-binding GTPase HW988_RS09940 PF07650 KH domain HW988_RS09945 PF00035 Double-stranded RNA binding motif HW988_RS09945 PF14622 Ribonuclease-III-like HW988_RS09950 PF00919 Uncharacterized protein family UPF0004 HW988_RS09950 PF04055 Radical SAM superfamily HW988_RS09960 PF00266 Aminotransferase class-V HW988_RS09975 PF13302 Acetyltransferase (GNAT) domain HW988_RS09980 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HW988_RS09985 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HW988_RS09990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HW988_RS09990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HW988_RS09990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HW988_RS09990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HW988_RS10000 PF02457 DisA bacterial checkpoint controller nucleotide-binding HW988_RS10005 PF01434 Peptidase family M41 HW988_RS10005 PF17862 AAA+ lid domain HW988_RS10005 PF00004 ATPase family associated with various cellular activities (AAA) HW988_RS10010 PF01171 PP-loop family HW988_RS10015 PF00171 Aldehyde dehydrogenase family HW988_RS10035 PF00486 Transcriptional regulatory protein, C terminal HW988_RS10035 PF00072 Response regulator receiver domain HW988_RS10040 PF08447 PAS fold HW988_RS10040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS10040 PF08448 PAS fold HW988_RS10055 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HW988_RS10060 PF03061 Thioesterase superfamily HW988_RS10065 PF01066 CDP-alcohol phosphatidyltransferase HW988_RS10080 PF00939 Sodium:sulfate symporter transmembrane region HW988_RS10115 PF01522 Polysaccharide deacetylase HW988_RS10115 PF14883 Hypothetical glycosyl hydrolase family 13 HW988_RS10120 PF00535 Glycosyl transferase family 2 HW988_RS10225 PF02630 SCO1/SenC HW988_RS10240 PF00005 ABC transporter HW988_RS10245 PF00005 ABC transporter HW988_RS10250 PF00005 ABC transporter HW988_RS10255 PF13533 Biotin-lipoyl like HW988_RS10265 PF12729 Four helix bundle sensory module for signal transduction HW988_RS10265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS10265 PF00672 HAMP domain HW988_RS10270 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HW988_RS10285 PF07670 Nucleoside recognition HW988_RS10285 PF02421 Ferrous iron transport protein B HW988_RS10285 PF07664 Ferrous iron transport protein B C terminus HW988_RS10305 PF01242 6-pyruvoyl tetrahydropterin synthase HW988_RS10315 PF02666 Phosphatidylserine decarboxylase HW988_RS10355 PF01642 Methylmalonyl-CoA mutase HW988_RS10355 PF02310 B12 binding domain HW988_RS10360 PF00378 Enoyl-CoA hydratase/isomerase HW988_RS10365 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HW988_RS10365 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HW988_RS10385 PF13860 FlgD Ig-like domain HW988_RS10385 PF00082 Subtilase family HW988_RS10385 PF02225 PA domain HW988_RS10385 PF05922 Peptidase inhibitor I9 HW988_RS10395 PF00072 Response regulator receiver domain HW988_RS10395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS10395 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS10395 PF00989 PAS fold HW988_RS10395 PF01627 Hpt domain HW988_RS10395 PF18415 Histidine kinase receptor ArcB trans-membrane domain HW988_RS10435 PF00854 POT family HW988_RS10440 PF05173 Dihydrodipicolinate reductase, C-terminus HW988_RS10440 PF01113 Dihydrodipicolinate reductase, N-terminus HW988_RS10445 PF00982 Glycosyltransferase family 20 HW988_RS10450 PF00723 Glycosyl hydrolases family 15 HW988_RS10470 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HW988_RS10470 PF00378 Enoyl-CoA hydratase/isomerase HW988_RS10470 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HW988_RS10475 PF00108 Thiolase, N-terminal domain HW988_RS10475 PF02803 Thiolase, C-terminal domain HW988_RS10485 PF00390 Malic enzyme, N-terminal domain HW988_RS10485 PF03949 Malic enzyme, NAD binding domain HW988_RS10485 PF01515 Phosphate acetyl/butaryl transferase HW988_RS10495 PF10091 Putative glucoamylase HW988_RS10495 PF06165 Glycosyltransferase family 36 HW988_RS10495 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain HW988_RS10500 PF16360 GTP-binding GTPase Middle Region HW988_RS10500 PF01926 50S ribosome-binding GTPase HW988_RS10500 PF13167 GTP-binding GTPase N-terminal HW988_RS10520 PF03061 Thioesterase superfamily HW988_RS10525 PF00196 Bacterial regulatory proteins, luxR family HW988_RS10525 PF00072 Response regulator receiver domain HW988_RS10530 PF00072 Response regulator receiver domain HW988_RS10555 PF01743 Poly A polymerase head domain HW988_RS10555 PF13735 tRNA nucleotidyltransferase domain 2 putative HW988_RS10555 PF12627 Probable RNA and SrmB- binding site of polymerase A HW988_RS10560 PF08331 Domain of unknown function (DUF1730) HW988_RS10575 PF00654 Voltage gated chloride channel HW988_RS10580 PF04102 SlyX HW988_RS10600 PF00491 Arginase family HW988_RS10605 PF01212 Beta-eliminating lyase HW988_RS10610 PF03301 Tryptophan 2,3-dioxygenase HW988_RS10615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS10615 PF00183 Hsp90 protein HW988_RS10625 PF00578 AhpC/TSA family HW988_RS10635 PF13193 AMP-binding enzyme C-terminal domain HW988_RS10635 PF00501 AMP-binding enzyme HW988_RS10640 PF01355 High potential iron-sulfur protein HW988_RS10650 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HW988_RS10655 PF00873 AcrB/AcrD/AcrF family HW988_RS10675 PF01479 S4 domain HW988_RS10675 PF00849 RNA pseudouridylate synthase HW988_RS10710 PF01638 HxlR-like helix-turn-helix HW988_RS10715 PF00881 Nitroreductase family HW988_RS10720 PF00296 Luciferase-like monooxygenase HW988_RS10755 PF07690 Major Facilitator Superfamily HW988_RS10770 PF00012 Hsp70 protein HW988_RS10790 PF05683 Fumarase C-terminus HW988_RS10790 PF05681 Fumarate hydratase (Fumerase) HW988_RS10805 PF00196 Bacterial regulatory proteins, luxR family HW988_RS10815 PF00654 Voltage gated chloride channel HW988_RS10820 PF03060 Nitronate monooxygenase HW988_RS10840 PF01925 Sulfite exporter TauE/SafE HW988_RS10850 PF07690 Major Facilitator Superfamily HW988_RS10865 PF01966 HD domain HW988_RS10865 PF12072 Domain of unknown function (DUF3552) HW988_RS10870 PF09308 LuxQ, periplasmic HW988_RS10870 PF00072 Response regulator receiver domain HW988_RS10870 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS10870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS10875 PF03471 Transporter associated domain HW988_RS10875 PF01595 Cyclin M transmembrane N-terminal domain HW988_RS10875 PF00571 CBS domain HW988_RS10915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HW988_RS10915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HW988_RS10915 PF02770 Acyl-CoA dehydrogenase, middle domain HW988_RS10915 PF09317 Domain of unknown function (DUF1974) HW988_RS10925 PF06827 Zinc finger found in FPG and IleRS HW988_RS10925 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HW988_RS10925 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HW988_RS10950 PF02798 Glutathione S-transferase, N-terminal domain HW988_RS10950 PF00043 Glutathione S-transferase, C-terminal domain HW988_RS10985 PF03466 LysR substrate binding domain HW988_RS10985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS10990 PF10417 C-terminal domain of 1-Cys peroxiredoxin HW988_RS10990 PF00578 AhpC/TSA family HW988_RS10995 PF13192 Thioredoxin domain HW988_RS10995 PF07992 Pyridine nucleotide-disulphide oxidoreductase HW988_RS11015 PF01343 Peptidase family S49 HW988_RS11015 PF08496 Peptidase family S49 N-terminal HW988_RS11020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HW988_RS11020 PF00005 ABC transporter HW988_RS11025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HW988_RS11025 PF00005 ABC transporter HW988_RS11030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HW988_RS11035 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS11040 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS11040 PF12911 N-terminal TM domain of oligopeptide transport permease C HW988_RS11050 PF02416 mttA/Hcf106 family HW988_RS11055 PF02416 mttA/Hcf106 family HW988_RS11060 PF03009 Glycerophosphoryl diester phosphodiesterase family HW988_RS11070 PF03449 Transcription elongation factor, N-terminal HW988_RS11070 PF01272 Transcription elongation factor, GreA/GreB, C-term HW988_RS11085 PF08443 RimK-like ATP-grasp domain HW988_RS11085 PF18030 RimK PreATP-grasp domain HW988_RS11090 PF16123 Hydroxyacylglutathione hydrolase C-terminus HW988_RS11090 PF00753 Metallo-beta-lactamase superfamily HW988_RS11100 PF04820 Tryptophan halogenase HW988_RS11110 PF18389 TrmO C-terminal domain HW988_RS11110 PF01980 tRNA-methyltransferase O HW988_RS11115 PF08264 Anticodon-binding domain of tRNA HW988_RS11115 PF00133 tRNA synthetases class I (I, L, M and V) HW988_RS11120 PF01022 Bacterial regulatory protein, arsR family HW988_RS11125 PF07690 Major Facilitator Superfamily HW988_RS11140 PF00484 Carbonic anhydrase HW988_RS11155 PF01470 Pyroglutamyl peptidase HW988_RS11160 PF01472 PUA domain HW988_RS11160 PF00696 Amino acid kinase family HW988_RS11165 PF00171 Aldehyde dehydrogenase family HW988_RS11170 PF01699 Sodium/calcium exchanger protein HW988_RS11175 PF00171 Aldehyde dehydrogenase family HW988_RS11270 PF00171 Aldehyde dehydrogenase family HW988_RS11275 PF00999 Sodium/hydrogen exchanger family HW988_RS11285 PF00082 Subtilase family HW988_RS11310 PF00873 AcrB/AcrD/AcrF family HW988_RS11315 PF00089 Trypsin HW988_RS11320 PF00999 Sodium/hydrogen exchanger family HW988_RS11320 PF02254 TrkA-N domain HW988_RS11325 PF04073 Aminoacyl-tRNA editing domain HW988_RS11335 PF00403 Heavy-metal-associated domain HW988_RS11345 PF00115 Cytochrome C and Quinol oxidase polypeptide I HW988_RS11355 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HW988_RS11355 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HW988_RS11360 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HW988_RS11360 PF13746 4Fe-4S dicluster domain HW988_RS11360 PF12801 4Fe-4S binding domain HW988_RS11380 PF06794 Uncharacterised protein family (UPF0270) HW988_RS11385 PF00075 RNase H HW988_RS11390 PF12823 Domain of unknown function (DUF3817) HW988_RS11405 PF00497 Bacterial extracellular solute-binding proteins, family 3 HW988_RS11405 PF00072 Response regulator receiver domain HW988_RS11405 PF00989 PAS fold HW988_RS11405 PF01627 Hpt domain HW988_RS11405 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS11405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS11415 PF00899 ThiF family HW988_RS11430 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HW988_RS11430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HW988_RS11435 PF13419 Haloacid dehalogenase-like hydrolase HW988_RS11445 PF13335 Magnesium chelatase, subunit ChlI C-terminal HW988_RS11445 PF01078 Magnesium chelatase, subunit ChlI HW988_RS11450 PF02899 Phage integrase, N-terminal SAM-like domain HW988_RS11450 PF00589 Phage integrase family HW988_RS11475 PF08486 Stage II sporulation protein HW988_RS11480 PF01145 SPFH domain / Band 7 family HW988_RS11505 PF03023 Lipid II flippase MurJ HW988_RS11510 PF01541 GIY-YIG catalytic domain HW988_RS11510 PF08459 UvrC Helix-hairpin-helix N-terminal HW988_RS11510 PF02151 UvrB/uvrC motif HW988_RS11515 PF00271 Helicase conserved C-terminal domain HW988_RS11515 PF04851 Type III restriction enzyme, res subunit HW988_RS11515 PF02151 UvrB/uvrC motif HW988_RS11515 PF12344 Ultra-violet resistance protein B HW988_RS11515 PF17757 UvrB interaction domain HW988_RS11520 PF01804 Penicillin amidase HW988_RS11530 PF01406 tRNA synthetases class I (C) catalytic domain HW988_RS11530 PF09190 DALR domain HW988_RS11535 PF00749 tRNA synthetases class I (E and Q), catalytic domain HW988_RS11540 PF02559 CarD-like/TRCF domain HW988_RS11545 PF00082 Subtilase family HW988_RS11570 PF00270 DEAD/DEAH box helicase HW988_RS11570 PF17191 RecG wedge domain HW988_RS11570 PF00271 Helicase conserved C-terminal domain HW988_RS11575 PF11871 Domain of unknown function (DUF3391) HW988_RS11575 PF01966 HD domain HW988_RS11590 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS11590 PF00072 Response regulator receiver domain HW988_RS11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS11590 PF09308 LuxQ, periplasmic HW988_RS11605 PF00152 tRNA synthetases class II (D, K and N) HW988_RS11605 PF01336 OB-fold nucleic acid binding domain HW988_RS11610 PF01791 DeoC/LacD family aldolase HW988_RS11615 PF01106 NifU-like domain HW988_RS11615 PF01521 Iron-sulphur cluster biosynthesis HW988_RS11620 PF01554 MatE HW988_RS11640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS11640 PF00072 Response regulator receiver domain HW988_RS11640 PF09308 LuxQ, periplasmic HW988_RS11640 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS11660 PF03476 MOSC N-terminal beta barrel domain HW988_RS11660 PF00111 2Fe-2S iron-sulfur cluster binding domain HW988_RS11660 PF03473 MOSC domain HW988_RS11670 PF07690 Major Facilitator Superfamily HW988_RS11675 PF13406 Transglycosylase SLT domain HW988_RS11680 PF00083 Sugar (and other) transporter HW988_RS11680 PF07690 Major Facilitator Superfamily HW988_RS11700 PF00899 ThiF family HW988_RS11705 PF01026 TatD related DNase HW988_RS11720 PF09335 SNARE associated Golgi protein HW988_RS11725 PF00849 RNA pseudouridylate synthase HW988_RS11725 PF01479 S4 domain HW988_RS11745 PF02926 THUMP domain HW988_RS11745 PF01170 Putative RNA methylase family UPF0020 HW988_RS11765 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HW988_RS11770 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HW988_RS11815 PF13396 Phospholipase_D-nuclease N-terminal HW988_RS11815 PF13091 PLD-like domain HW988_RS11830 PF00072 Response regulator receiver domain HW988_RS11830 PF01339 CheB methylesterase HW988_RS11850 PF01627 Hpt domain HW988_RS11850 PF00072 Response regulator receiver domain HW988_RS11850 PF01584 CheW-like domain HW988_RS11850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS11860 PF00072 Response regulator receiver domain HW988_RS11870 PF00471 Ribosomal protein L33 HW988_RS11905 PF11849 Domain of unknown function (DUF3369) HW988_RS11925 PF00175 Oxidoreductase NAD-binding domain HW988_RS11925 PF00111 2Fe-2S iron-sulfur cluster binding domain HW988_RS11925 PF00970 Oxidoreductase FAD-binding domain HW988_RS11940 PF17760 UvrA interaction domain HW988_RS11940 PF00005 ABC transporter HW988_RS11940 PF17755 UvrA DNA-binding domain HW988_RS11955 PF01475 Ferric uptake regulator family HW988_RS11960 PF02649 Type I GTP cyclohydrolase folE2 HW988_RS11965 PF02545 Maf-like protein HW988_RS11970 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HW988_RS12025 PF04085 rod shape-determining protein MreC HW988_RS12035 PF00905 Penicillin binding protein transpeptidase domain HW988_RS12035 PF03717 Penicillin-binding Protein dimerisation domain HW988_RS12040 PF01098 Cell cycle protein HW988_RS12060 PF13411 MerR HTH family regulatory protein HW988_RS12065 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HW988_RS12065 PF01464 Transglycosylase SLT domain HW988_RS12080 PF00085 Thioredoxin HW988_RS12095 PF17782 DprA winged helix domain HW988_RS12095 PF02481 DNA recombination-mediator protein A HW988_RS12115 PF03772 Competence protein HW988_RS12115 PF00753 Metallo-beta-lactamase superfamily HW988_RS12130 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) HW988_RS12135 PF04183 IucA / IucC family HW988_RS12135 PF06276 Ferric iron reductase FhuF-like transporter HW988_RS12145 PF06276 Ferric iron reductase FhuF-like transporter HW988_RS12145 PF04183 IucA / IucC family HW988_RS12175 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HW988_RS12185 PF05496 Holliday junction DNA helicase RuvB P-loop domain HW988_RS12185 PF17864 RuvB AAA lid domain HW988_RS12185 PF05491 RuvB C-terminal winged helix domain HW988_RS12190 PF07499 RuvA, C-terminal domain HW988_RS12190 PF01330 RuvA N terminal domain HW988_RS12195 PF02075 Crossover junction endodeoxyribonuclease RuvC HW988_RS12205 PF08207 Elongation factor P (EF-P) KOW-like domain HW988_RS12205 PF01132 Elongation factor P (EF-P) OB domain HW988_RS12205 PF09285 Elongation factor P, C-terminal HW988_RS12250 PF03972 MmgE/PrpD family HW988_RS12275 PF01037 Lrp/AsnC ligand binding domain HW988_RS12275 PF13404 AsnC-type helix-turn-helix domain HW988_RS12300 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HW988_RS12300 PF00749 tRNA synthetases class I (E and Q), catalytic domain HW988_RS12315 PF03109 ABC1 family HW988_RS12375 PF01618 MotA/TolQ/ExbB proton channel family HW988_RS12380 PF00691 OmpA family HW988_RS12380 PF13677 Membrane MotB of proton-channel complex MotA/MotB HW988_RS12395 PF00285 Citrate synthase, C-terminal domain HW988_RS12420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS12420 PF02743 Cache domain HW988_RS12420 PF00672 HAMP domain HW988_RS12435 PF12805 FUSC-like inner membrane protein yccS HW988_RS12445 PF01433 Peptidase family M1 domain HW988_RS12445 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HW988_RS12445 PF11940 Domain of unknown function (DUF3458) Ig-like fold HW988_RS12465 PF01227 GTP cyclohydrolase I HW988_RS12530 PF01593 Flavin containing amine oxidoreductase HW988_RS12540 PF00664 ABC transporter transmembrane region HW988_RS12540 PF00005 ABC transporter HW988_RS12545 PF00664 ABC transporter transmembrane region HW988_RS12545 PF00005 ABC transporter HW988_RS12550 PF00571 CBS domain HW988_RS12550 PF03448 MgtE intracellular N domain HW988_RS12550 PF01769 Divalent cation transporter HW988_RS12565 PF00082 Subtilase family HW988_RS12600 PF02789 Cytosol aminopeptidase family, N-terminal domain HW988_RS12600 PF00883 Cytosol aminopeptidase family, catalytic domain HW988_RS12610 PF04379 ApaG domain HW988_RS12625 PF13302 Acetyltransferase (GNAT) domain HW988_RS12680 PF01243 Pyridoxamine 5'-phosphate oxidase HW988_RS12680 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HW988_RS12685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HW988_RS12685 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HW988_RS12700 PF00072 Response regulator receiver domain HW988_RS12700 PF00486 Transcriptional regulatory protein, C terminal HW988_RS12705 PF00672 HAMP domain HW988_RS12705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS12705 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS12735 PF13545 Crp-like helix-turn-helix domain HW988_RS12735 PF00027 Cyclic nucleotide-binding domain HW988_RS12740 PF00691 OmpA family HW988_RS12760 PF00210 Ferritin-like domain HW988_RS12775 PF00486 Transcriptional regulatory protein, C terminal HW988_RS12775 PF00072 Response regulator receiver domain HW988_RS12780 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS12780 PF00672 HAMP domain HW988_RS12780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS12805 PF01483 Proprotein convertase P-domain HW988_RS12805 PF00082 Subtilase family HW988_RS12850 PF17200 Single Cache domain 2 HW988_RS12850 PF00672 HAMP domain HW988_RS12850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS12860 PF00171 Aldehyde dehydrogenase family HW988_RS12880 PF00485 Phosphoribulokinase / Uridine kinase family HW988_RS12885 PF13520 Amino acid permease HW988_RS12900 PF08274 PhnA Zinc-Ribbon HW988_RS12900 PF03831 PhnA domain HW988_RS12925 PF00226 DnaJ domain HW988_RS12925 PF01556 DnaJ C terminal domain HW988_RS12925 PF00684 DnaJ central domain HW988_RS12935 PF07963 Prokaryotic N-terminal methylation motif HW988_RS12935 PF14245 Type IV pilin PilA HW988_RS12940 PF02617 ATP-dependent Clp protease adaptor protein ClpS HW988_RS12945 PF17871 AAA lid domain HW988_RS12945 PF07724 AAA domain (Cdc48 subfamily) HW988_RS12945 PF00004 ATPase family associated with various cellular activities (AAA) HW988_RS12945 PF10431 C-terminal, D2-small domain, of ClpB protein HW988_RS12945 PF02861 Clp amino terminal domain, pathogenicity island component HW988_RS12950 PF01435 Peptidase family M48 HW988_RS12955 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HW988_RS12955 PF01464 Transglycosylase SLT domain HW988_RS12965 PF00082 Subtilase family HW988_RS12990 PF00795 Carbon-nitrogen hydrolase HW988_RS12995 PF01713 Smr domain HW988_RS12995 PF00488 MutS domain V HW988_RS13065 PF00180 Isocitrate/isopropylmalate dehydrogenase HW988_RS13065 PF18324 Hypothetical protein TT1725 HW988_RS13080 PF02702 Osmosensitive K+ channel His kinase sensor domain HW988_RS13080 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS13080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS13080 PF13493 Domain of unknown function (DUF4118) HW988_RS13085 PF01430 Hsp33 protein HW988_RS13095 PF01557 Fumarylacetoacetate (FAA) hydrolase family HW988_RS13100 PF00171 Aldehyde dehydrogenase family HW988_RS13105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HW988_RS13110 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HW988_RS13160 PF02954 Bacterial regulatory protein, Fis family HW988_RS13160 PF01590 GAF domain HW988_RS13175 PF00089 Trypsin HW988_RS13190 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus HW988_RS13190 PF01048 Phosphorylase superfamily HW988_RS13195 PF02678 Pirin HW988_RS13195 PF05726 Pirin C-terminal cupin domain HW988_RS13255 PF00550 Phosphopantetheine attachment site HW988_RS13260 PF00109 Beta-ketoacyl synthase, N-terminal domain HW988_RS13260 PF02801 Beta-ketoacyl synthase, C-terminal domain HW988_RS13270 PF01522 Polysaccharide deacetylase HW988_RS13275 PF00891 O-methyltransferase domain HW988_RS13280 PF00109 Beta-ketoacyl synthase, N-terminal domain HW988_RS13280 PF02801 Beta-ketoacyl synthase, C-terminal domain HW988_RS13280 PF08659 KR domain HW988_RS13280 PF00698 Acyl transferase domain HW988_RS13280 PF16197 Ketoacyl-synthetase C-terminal extension HW988_RS13280 PF00550 Phosphopantetheine attachment site HW988_RS13285 PF00550 Phosphopantetheine attachment site HW988_RS13290 PF07977 FabA-like domain HW988_RS13315 PF00221 Aromatic amino acid lyase HW988_RS13325 PF04536 TPM domain HW988_RS13330 PF04011 LemA family HW988_RS13335 PF01170 Putative RNA methylase family UPF0020 HW988_RS13335 PF02926 THUMP domain HW988_RS13335 PF10672 S-adenosylmethionine-dependent methyltransferase HW988_RS13350 PF00588 SpoU rRNA Methylase family HW988_RS13355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HW988_RS13355 PF02770 Acyl-CoA dehydrogenase, middle domain HW988_RS13355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HW988_RS13360 PF18146 Damage-inducible protein CinA KH domain HW988_RS13360 PF00994 Probable molybdopterin binding domain HW988_RS13360 PF02464 Competence-damaged protein HW988_RS13370 PF07690 Major Facilitator Superfamily HW988_RS13375 PF00575 S1 RNA binding domain HW988_RS13375 PF02401 LytB protein HW988_RS13380 PF08471 Class II vitamin B12-dependent ribonucleotide reductase HW988_RS13380 PF02867 Ribonucleotide reductase, barrel domain HW988_RS13390 PF00266 Aminotransferase class-V HW988_RS13395 PF01521 Iron-sulphur cluster biosynthesis HW988_RS13410 PF00561 alpha/beta hydrolase fold HW988_RS13420 PF01479 S4 domain HW988_RS13420 PF00579 tRNA synthetases class I (W and Y) HW988_RS13425 PF12072 Domain of unknown function (DUF3552) HW988_RS13425 PF00013 KH domain HW988_RS13425 PF01966 HD domain HW988_RS13430 PF01812 5-formyltetrahydrofolate cyclo-ligase family HW988_RS13435 PF05164 Cell division protein ZapA HW988_RS13465 PF13460 NAD(P)H-binding HW988_RS13470 PF00448 SRP54-type protein, GTPase domain HW988_RS13470 PF02881 SRP54-type protein, helical bundle domain HW988_RS13475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS13475 PF00672 HAMP domain HW988_RS13475 PF02203 Tar ligand binding domain homologue HW988_RS13480 PF06826 Predicted Permease Membrane Region HW988_RS13505 PF02082 Transcriptional regulator HW988_RS13510 PF00881 Nitroreductase family HW988_RS13520 PF00664 ABC transporter transmembrane region HW988_RS13520 PF00005 ABC transporter HW988_RS13545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS13545 PF03466 LysR substrate binding domain HW988_RS13570 PF02463 RecF/RecN/SMC N terminal domain HW988_RS13570 PF06470 SMC proteins Flexible Hinge Domain HW988_RS13600 PF00391 PEP-utilising enzyme, mobile domain HW988_RS13600 PF02896 PEP-utilising enzyme, TIM barrel domain HW988_RS13600 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HW988_RS13625 PF03129 Anticodon binding domain HW988_RS13625 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HW988_RS13645 PF10609 NUBPL iron-transfer P-loop NTPase HW988_RS13685 PF00877 NlpC/P60 family HW988_RS13685 PF01476 LysM domain HW988_RS13715 PF03449 Transcription elongation factor, N-terminal HW988_RS13715 PF01272 Transcription elongation factor, GreA/GreB, C-term HW988_RS13730 PF00211 Adenylate and Guanylate cyclase catalytic domain HW988_RS13735 PF00486 Transcriptional regulatory protein, C terminal HW988_RS13735 PF00072 Response regulator receiver domain HW988_RS13740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS13740 PF00072 Response regulator receiver domain HW988_RS13740 PF00672 HAMP domain HW988_RS13740 PF17149 Periplasmic sensor domain found in signal transduction proteins HW988_RS13740 PF01627 Hpt domain HW988_RS13740 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS13750 PF12849 PBP superfamily domain HW988_RS13760 PF00005 ABC transporter HW988_RS13775 PF13393 Histidyl-tRNA synthetase HW988_RS13775 PF03129 Anticodon binding domain HW988_RS13785 PF00082 Subtilase family HW988_RS13800 PF01790 Prolipoprotein diacylglyceryl transferase HW988_RS13825 PF01029 NusB family HW988_RS13825 PF01189 16S rRNA methyltransferase RsmB/F HW988_RS13835 PF03477 ATP cone domain HW988_RS13840 PF01029 NusB family HW988_RS13855 PF03618 Kinase/pyrophosphorylase HW988_RS13870 PF13091 PLD-like domain HW988_RS13880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS13885 PF03466 LysR substrate binding domain HW988_RS13885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS13900 PF05193 Peptidase M16 inactive domain HW988_RS13900 PF00675 Insulinase (Peptidase family M16) HW988_RS13905 PF03748 Flagellar basal body-associated protein FliL HW988_RS13940 PF01343 Peptidase family S49 HW988_RS13945 PF00575 S1 RNA binding domain HW988_RS13955 PF00561 alpha/beta hydrolase fold HW988_RS13965 PF00089 Trypsin HW988_RS13990 PF03466 LysR substrate binding domain HW988_RS13990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS13995 PF02224 Cytidylate kinase HW988_RS14000 PF00155 Aminotransferase class I and II HW988_RS14015 PF01625 Peptide methionine sulfoxide reductase HW988_RS14030 PF00291 Pyridoxal-phosphate dependent enzyme HW988_RS14030 PF13291 ACT domain HW988_RS14045 PF00121 Triosephosphate isomerase HW988_RS14050 PF00162 Phosphoglycerate kinase HW988_RS14055 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HW988_RS14055 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HW988_RS14065 PF03006 Haemolysin-III related HW988_RS14075 PF01026 TatD related DNase HW988_RS14080 PF09115 DNA polymerase III, delta subunit, C terminal HW988_RS14085 PF02223 Thymidylate kinase HW988_RS14140 PF01544 CorA-like Mg2+ transporter protein HW988_RS14175 PF00005 ABC transporter HW988_RS14195 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HW988_RS14195 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HW988_RS14195 PF01189 16S rRNA methyltransferase RsmB/F HW988_RS14205 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS14205 PF00072 Response regulator receiver domain HW988_RS14205 PF01627 Hpt domain HW988_RS14205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS14210 PF16736 Single Cache-like HW988_RS14210 PF00989 PAS fold HW988_RS14210 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS14210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS14215 PF00072 Response regulator receiver domain HW988_RS14215 PF00486 Transcriptional regulatory protein, C terminal HW988_RS14220 PF01895 PhoU domain HW988_RS14230 PF02541 Ppx/GppA phosphatase family HW988_RS14245 PF13090 Polyphosphate kinase C-terminal domain 2 HW988_RS14245 PF13089 Polyphosphate kinase N-terminal domain HW988_RS14245 PF17941 Polyphosphate kinase C-terminal domain 1 HW988_RS14245 PF02503 Polyphosphate kinase middle domain HW988_RS14250 PF00586 AIR synthase related protein, N-terminal domain HW988_RS14250 PF02769 AIR synthase related protein, C-terminal domain HW988_RS14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS14260 PF03466 LysR substrate binding domain HW988_RS14265 PF04264 YceI-like domain HW988_RS14270 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HW988_RS14280 PF00005 ABC transporter HW988_RS14285 PF00873 AcrB/AcrD/AcrF family HW988_RS14305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS14305 PF18719 ArlS sensor domain HW988_RS14305 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS14310 PF16326 ABC transporter C-terminal domain HW988_RS14310 PF00005 ABC transporter HW988_RS14310 PF12848 ABC transporter HW988_RS14315 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HW988_RS14320 PF07995 Glucose / Sorbosone dehydrogenase HW988_RS14325 PF00271 Helicase conserved C-terminal domain HW988_RS14325 PF00270 DEAD/DEAH box helicase HW988_RS14330 PF03764 Elongation factor G, domain IV HW988_RS14330 PF00679 Elongation factor G C-terminus HW988_RS14330 PF14492 Elongation Factor G, domain II HW988_RS14330 PF00009 Elongation factor Tu GTP binding domain HW988_RS14330 PF03144 Elongation factor Tu domain 2 HW988_RS14395 PF00571 CBS domain HW988_RS14395 PF01595 Cyclin M transmembrane N-terminal domain HW988_RS14400 PF03091 CutA1 divalent ion tolerance protein HW988_RS14405 PF00156 Phosphoribosyl transferase domain HW988_RS14420 PF02780 Transketolase, C-terminal domain HW988_RS14420 PF02779 Transketolase, pyrimidine binding domain HW988_RS14480 PF11818 C-terminal domain of tail specific protease (DUF3340) HW988_RS14480 PF03572 Peptidase family S41 HW988_RS14480 PF17804 Tail specific protease N-terminal domain HW988_RS14480 PF00595 PDZ domain HW988_RS14495 PF06965 Na+/H+ antiporter 1 HW988_RS14495 PF13462 Thioredoxin HW988_RS14510 PF01751 Toprim domain HW988_RS14510 PF01131 DNA topoisomerase HW988_RS14510 PF13368 Topoisomerase C-terminal repeat HW988_RS14525 PF01523 Putative modulator of DNA gyrase HW988_RS14530 PF01523 Putative modulator of DNA gyrase HW988_RS14550 PF01965 DJ-1/PfpI family HW988_RS14570 PF09371 Tex-like protein N-terminal domain HW988_RS14570 PF16921 Tex protein YqgF-like domain HW988_RS14570 PF17674 HHH domain HW988_RS14570 PF00575 S1 RNA binding domain HW988_RS14575 PF01176 Translation initiation factor 1A / IF-1 HW988_RS14585 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HW988_RS14585 PF00132 Bacterial transferase hexapeptide (six repeats) HW988_RS14595 PF02203 Tar ligand binding domain homologue HW988_RS14595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS14595 PF00672 HAMP domain HW988_RS14605 PF00072 Response regulator receiver domain HW988_RS14605 PF01627 Hpt domain HW988_RS14605 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS14605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS14605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HW988_RS14605 PF00672 HAMP domain HW988_RS14615 PF10672 S-adenosylmethionine-dependent methyltransferase HW988_RS14615 PF01170 Putative RNA methylase family UPF0020 HW988_RS14615 PF02926 THUMP domain HW988_RS14630 PF00795 Carbon-nitrogen hydrolase HW988_RS14645 PF00830 Ribosomal L28 family HW988_RS14650 PF01084 Ribosomal protein S18 HW988_RS14690 PF00180 Isocitrate/isopropylmalate dehydrogenase HW988_RS14690 PF18324 Hypothetical protein TT1725 HW988_RS14695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS14695 PF03466 LysR substrate binding domain HW988_RS14715 PF17202 Single cache domain 3 HW988_RS14715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS14715 PF00672 HAMP domain HW988_RS14720 PF00672 HAMP domain HW988_RS14720 PF02203 Tar ligand binding domain homologue HW988_RS14720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS14725 PF13411 MerR HTH family regulatory protein HW988_RS14725 PF02607 B12 binding domain HW988_RS14730 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HW988_RS14730 PF02817 e3 binding domain HW988_RS14730 PF00364 Biotin-requiring enzyme HW988_RS14750 PF00034 Cytochrome c HW988_RS14750 PF03150 Di-haem cytochrome c peroxidase HW988_RS14760 PF00158 Sigma-54 interaction domain HW988_RS14760 PF02954 Bacterial regulatory protein, Fis family HW988_RS14760 PF00072 Response regulator receiver domain HW988_RS14770 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS14770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS14780 PF00158 Sigma-54 interaction domain HW988_RS14780 PF00072 Response regulator receiver domain HW988_RS14780 PF02954 Bacterial regulatory protein, Fis family HW988_RS14795 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS14795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS14795 PF09308 LuxQ, periplasmic HW988_RS14795 PF00072 Response regulator receiver domain HW988_RS14800 PF06826 Predicted Permease Membrane Region HW988_RS14805 PF00155 Aminotransferase class I and II HW988_RS14810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HW988_RS14815 PF00873 AcrB/AcrD/AcrF family HW988_RS14820 PF02321 Outer membrane efflux protein HW988_RS14825 PF17763 Glutaminase/Asparaginase C-terminal domain HW988_RS14825 PF00710 Asparaginase, N-terminal HW988_RS14835 PF01734 Patatin-like phospholipase HW988_RS14870 PF12706 Beta-lactamase superfamily domain HW988_RS14875 PF00561 alpha/beta hydrolase fold HW988_RS14880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS14880 PF03466 LysR substrate binding domain HW988_RS14890 PF00005 ABC transporter HW988_RS14890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HW988_RS14920 PF00486 Transcriptional regulatory protein, C terminal HW988_RS14920 PF00072 Response regulator receiver domain HW988_RS14925 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HW988_RS14925 PF00072 Response regulator receiver domain HW988_RS14925 PF01627 Hpt domain HW988_RS14925 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS14925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS14925 PF00672 HAMP domain HW988_RS14950 PF01329 Pterin 4 alpha carbinolamine dehydratase HW988_RS14960 PF00700 Bacterial flagellin C-terminal helical region HW988_RS14960 PF00669 Bacterial flagellin N-terminal helical region HW988_RS14965 PF00005 ABC transporter HW988_RS14970 PF00005 ABC transporter HW988_RS14970 PF12399 Branched-chain amino acid ATP-binding cassette transporter HW988_RS14975 PF02653 Branched-chain amino acid transport system / permease component HW988_RS14980 PF13458 Periplasmic binding protein HW988_RS14995 PF00691 OmpA family HW988_RS14995 PF13488 Glycine zipper HW988_RS15055 PF00004 ATPase family associated with various cellular activities (AAA) HW988_RS15055 PF16193 AAA C-terminal domain HW988_RS15055 PF12002 MgsA AAA+ ATPase C terminal HW988_RS15070 PF07660 Secretin and TonB N terminus short domain HW988_RS15070 PF03958 Bacterial type II/III secretion system short domain HW988_RS15070 PF00263 Bacterial type II and III secretion system protein HW988_RS15070 PF11741 AMIN domain HW988_RS15095 PF01478 Type IV leader peptidase family HW988_RS15095 PF06750 Bacterial Peptidase A24 N-terminal domain HW988_RS15105 PF00005 ABC transporter HW988_RS15115 PF02142 MGS-like domain HW988_RS15115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HW988_RS15115 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HW988_RS15125 PF00117 Glutamine amidotransferase class-I HW988_RS15125 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HW988_RS15130 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HW988_RS15130 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HW988_RS15135 PF10502 Signal peptidase, peptidase S26 HW988_RS15145 PF10502 Signal peptidase, peptidase S26 HW988_RS15150 PF10502 Signal peptidase, peptidase S26 HW988_RS15155 PF06421 GTP-binding protein LepA C-terminus HW988_RS15155 PF00679 Elongation factor G C-terminus HW988_RS15155 PF03144 Elongation factor Tu domain 2 HW988_RS15155 PF00009 Elongation factor Tu GTP binding domain HW988_RS15160 PF02773 S-adenosylmethionine synthetase, C-terminal domain HW988_RS15160 PF02772 S-adenosylmethionine synthetase, central domain HW988_RS15160 PF00438 S-adenosylmethionine synthetase, N-terminal domain HW988_RS15165 PF00672 HAMP domain HW988_RS15165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS15165 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS15180 PF00156 Phosphoribosyl transferase domain HW988_RS15185 PF00309 Sigma-54 factor, Activator interacting domain (AID) HW988_RS15185 PF04963 Sigma-54 factor, core binding domain HW988_RS15185 PF04552 Sigma-54, DNA binding domain HW988_RS15190 PF00005 ABC transporter HW988_RS15210 PF01618 MotA/TolQ/ExbB proton channel family HW988_RS15260 PF00571 CBS domain HW988_RS15260 PF01380 SIS domain HW988_RS15265 PF00117 Glutamine amidotransferase class-I HW988_RS15265 PF06418 CTP synthase N-terminus HW988_RS15270 PF02348 Cytidylyltransferase HW988_RS15275 PF01926 50S ribosome-binding GTPase HW988_RS15280 PF02954 Bacterial regulatory protein, Fis family HW988_RS15280 PF00158 Sigma-54 interaction domain HW988_RS15280 PF00072 Response regulator receiver domain HW988_RS15295 PF01367 5'-3' exonuclease, C-terminal SAM fold HW988_RS15295 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HW988_RS15295 PF00476 DNA polymerase family A HW988_RS15310 PF00113 Enolase, C-terminal TIM barrel domain HW988_RS15310 PF03952 Enolase, N-terminal domain HW988_RS15320 PF00437 Type II/IV secretion system protein HW988_RS15340 PF13462 Thioredoxin HW988_RS15340 PF06965 Na+/H+ antiporter 1 HW988_RS15375 PF13677 Membrane MotB of proton-channel complex MotA/MotB HW988_RS15375 PF00691 OmpA family HW988_RS15420 PF04773 FecR protein HW988_RS15490 PF17746 SfsA N-terminal OB domain HW988_RS15490 PF03749 Sugar fermentation stimulation protein RE domain HW988_RS15495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HW988_RS15495 PF00364 Biotin-requiring enzyme HW988_RS15495 PF02817 e3 binding domain HW988_RS15505 PF07992 Pyridine nucleotide-disulphide oxidoreductase HW988_RS15505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HW988_RS15515 PF02803 Thiolase, C-terminal domain HW988_RS15515 PF00108 Thiolase, N-terminal domain HW988_RS15520 PF00440 Bacterial regulatory proteins, tetR family HW988_RS15520 PF16925 Tetracyclin repressor-like, C-terminal domain HW988_RS15545 PF01575 MaoC like domain HW988_RS15550 PF13638 PIN domain HW988_RS15550 PF02562 PhoH-like protein HW988_RS15565 PF01641 SelR domain HW988_RS15580 PF08281 Sigma-70, region 4 HW988_RS15580 PF04542 Sigma-70 region 2 HW988_RS15630 PF08308 PEGA domain HW988_RS15630 PF00069 Protein kinase domain HW988_RS15635 PF17151 Periplasmic sensor domain HW988_RS15635 PF00990 Diguanylate cyclase, GGDEF domain HW988_RS15645 PF03714 Bacterial pullanase-associated domain HW988_RS15645 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HW988_RS15645 PF17967 Pullulanase N2 domain HW988_RS15645 PF18494 Pullulanase Ins domain HW988_RS15645 PF11852 Domain of unknown function (DUF3372) HW988_RS15650 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS15655 PF00528 Binding-protein-dependent transport system inner membrane component HW988_RS15660 PF17912 MalK OB fold domain HW988_RS15660 PF00005 ABC transporter HW988_RS15665 PF02806 Alpha amylase, C-terminal all-beta domain HW988_RS15665 PF00128 Alpha amylase, catalytic domain HW988_RS15670 PF00480 ROK family HW988_RS15680 PF00342 Phosphoglucose isomerase HW988_RS15695 PF01047 MarR family HW988_RS15700 PF02566 OsmC-like protein HW988_RS15710 PF04055 Radical SAM superfamily HW988_RS15720 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase HW988_RS15730 PF00294 pfkB family carbohydrate kinase HW988_RS15730 PF01467 Cytidylyltransferase-like HW988_RS15745 PF05199 GMC oxidoreductase HW988_RS15755 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HW988_RS15755 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HW988_RS15760 PF01180 Dihydroorotate dehydrogenase HW988_RS15765 PF00293 NUDIX domain HW988_RS15780 PF00216 Bacterial DNA-binding protein HW988_RS15785 PF00152 tRNA synthetases class II (D, K and N) HW988_RS15785 PF01336 OB-fold nucleic acid binding domain HW988_RS15800 PF01523 Putative modulator of DNA gyrase HW988_RS15830 PF02347 Glycine cleavage system P-protein HW988_RS15880 PF00004 ATPase family associated with various cellular activities (AAA) HW988_RS15880 PF17862 AAA+ lid domain HW988_RS15880 PF06480 FtsH Extracellular HW988_RS15880 PF01434 Peptidase family M41 HW988_RS15950 PF01597 Glycine cleavage H-protein HW988_RS15955 PF01571 Aminomethyltransferase folate-binding domain HW988_RS15955 PF08669 Glycine cleavage T-protein C-terminal barrel domain HW988_RS15995 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS15995 PF00989 PAS fold HW988_RS15995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS15995 PF00672 HAMP domain HW988_RS15995 PF18698 Histidine kinase sensor domain HW988_RS16005 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HW988_RS16005 PF00072 Response regulator receiver domain HW988_RS16005 PF01627 Hpt domain HW988_RS16005 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS16005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS16005 PF00672 HAMP domain HW988_RS16010 PF02580 D-Tyr-tRNA(Tyr) deacylase HW988_RS16055 PF07075 Protein of unknown function (DUF1343) HW988_RS16090 PF00296 Luciferase-like monooxygenase HW988_RS16115 PF07669 Eco57I restriction-modification methylase HW988_RS16120 PF09587 Bacterial capsule synthesis protein PGA_cap HW988_RS16130 PF03641 Possible lysine decarboxylase HW988_RS16140 PF00270 DEAD/DEAH box helicase HW988_RS16140 PF00271 Helicase conserved C-terminal domain HW988_RS16145 PF01926 50S ribosome-binding GTPase HW988_RS16145 PF13167 GTP-binding GTPase N-terminal HW988_RS16145 PF16360 GTP-binding GTPase Middle Region HW988_RS16155 PF07690 Major Facilitator Superfamily HW988_RS16160 PF03006 Haemolysin-III related HW988_RS16170 PF00293 NUDIX domain HW988_RS16185 PF03853 YjeF-related protein N-terminus HW988_RS16185 PF01256 Carbohydrate kinase HW988_RS16190 PF00557 Metallopeptidase family M24 HW988_RS16210 PF07690 Major Facilitator Superfamily HW988_RS16215 PF13533 Biotin-lipoyl like HW988_RS16225 PF01047 MarR family HW988_RS16240 PF01728 FtsJ-like methyltransferase HW988_RS16240 PF18125 RlmM ferredoxin-like domain HW988_RS16280 PF01668 SmpB protein HW988_RS16285 PF00398 Ribosomal RNA adenine dimethylase HW988_RS16290 PF00814 Glycoprotease family HW988_RS16305 PF00691 OmpA family HW988_RS16360 PF00072 Response regulator receiver domain HW988_RS16360 PF00158 Sigma-54 interaction domain HW988_RS16360 PF02954 Bacterial regulatory protein, Fis family HW988_RS16365 PF13629 Pilus formation protein N terminal region HW988_RS16365 PF04972 BON domain HW988_RS16365 PF00263 Bacterial type II and III secretion system protein HW988_RS16370 PF00437 Type II/IV secretion system protein HW988_RS16390 PF02938 GAD domain HW988_RS16390 PF00152 tRNA synthetases class II (D, K and N) HW988_RS16390 PF01336 OB-fold nucleic acid binding domain HW988_RS16400 PF04542 Sigma-70 region 2 HW988_RS16400 PF00140 Sigma-70 factor, region 1.2 HW988_RS16400 PF04545 Sigma-70, region 4 HW988_RS16415 PF04542 Sigma-70 region 2 HW988_RS16415 PF04539 Sigma-70 region 3 HW988_RS16415 PF04545 Sigma-70, region 4 HW988_RS16420 PF10609 NUBPL iron-transfer P-loop NTPase HW988_RS16425 PF00448 SRP54-type protein, GTPase domain HW988_RS16430 PF00771 FHIPEP family HW988_RS16435 PF01312 FlhB HrpN YscU SpaS Family HW988_RS16440 PF01311 Bacterial export proteins, family 1 HW988_RS16445 PF01313 Bacterial export proteins, family 3 HW988_RS16450 PF00813 FliP family HW988_RS16460 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HW988_RS16460 PF04509 CheC-like family HW988_RS16465 PF02154 Flagellar motor switch protein FliM HW988_RS16465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HW988_RS16485 PF00459 Inositol monophosphatase family HW988_RS16510 PF13361 UvrD-like helicase C-terminal domain HW988_RS16510 PF00580 UvrD/REP helicase N-terminal domain HW988_RS16525 PF12544 Lysine-2,3-aminomutase HW988_RS16525 PF04055 Radical SAM superfamily HW988_RS16560 PF00166 Chaperonin 10 Kd subunit HW988_RS16565 PF14814 Bifunctional transglycosylase second domain HW988_RS16565 PF00905 Penicillin binding protein transpeptidase domain HW988_RS16565 PF00912 Transglycosylase HW988_RS16570 PF00753 Metallo-beta-lactamase superfamily HW988_RS16580 PF02702 Osmosensitive K+ channel His kinase sensor domain HW988_RS16580 PF13493 Domain of unknown function (DUF4118) HW988_RS16580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS16580 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS16585 PF00158 Sigma-54 interaction domain HW988_RS16585 PF02954 Bacterial regulatory protein, Fis family HW988_RS16585 PF00072 Response regulator receiver domain HW988_RS16595 PF01252 Signal peptidase (SPase) II HW988_RS16610 PF00072 Response regulator receiver domain HW988_RS16615 PF00072 Response regulator receiver domain HW988_RS16615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS16615 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS16615 PF13188 PAS domain HW988_RS16615 PF08448 PAS fold HW988_RS16625 PF01297 Zinc-uptake complex component A periplasmic HW988_RS16630 PF00005 ABC transporter HW988_RS16645 PF01790 Prolipoprotein diacylglyceryl transferase HW988_RS16655 PF03884 DNA gyrase inhibitor YacG HW988_RS16660 PF00216 Bacterial DNA-binding protein HW988_RS16665 PF00365 Phosphofructokinase HW988_RS16670 PF13458 Periplasmic binding protein HW988_RS16675 PF02653 Branched-chain amino acid transport system / permease component HW988_RS16680 PF02653 Branched-chain amino acid transport system / permease component HW988_RS16680 PF11862 Domain of unknown function (DUF3382) HW988_RS16685 PF00005 ABC transporter HW988_RS16685 PF12399 Branched-chain amino acid ATP-binding cassette transporter HW988_RS16690 PF00005 ABC transporter HW988_RS16700 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS16700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS16700 PF00672 HAMP domain HW988_RS16705 PF00072 Response regulator receiver domain HW988_RS16705 PF00486 Transcriptional regulatory protein, C terminal HW988_RS16710 PF07559 Flagellar basal body protein FlaE HW988_RS16710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HW988_RS16710 PF00460 Flagella basal body rod protein HW988_RS16720 PF03963 Flagellar hook capping protein - N-terminal region HW988_RS16720 PF13861 FlgD Tudor-like domain HW988_RS16720 PF13860 FlgD Ig-like domain HW988_RS16740 PF18269 T3SS EscN ATPase C-terminal domain HW988_RS16740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HW988_RS16740 PF02874 ATP synthase alpha/beta family, beta-barrel domain HW988_RS16745 PF02108 Flagellar assembly protein FliH HW988_RS16750 PF01706 FliG C-terminal domain HW988_RS16750 PF14841 FliG middle domain HW988_RS16750 PF14842 FliG N-terminal domain HW988_RS16755 PF01514 Secretory protein of YscJ/FliF family HW988_RS16755 PF08345 Flagellar M-ring protein C-terminal HW988_RS16760 PF02049 Flagellar hook-basal body complex protein FliE HW988_RS16765 PF00460 Flagella basal body rod protein HW988_RS16765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HW988_RS16770 PF00460 Flagella basal body rod protein HW988_RS16775 PF00158 Sigma-54 interaction domain HW988_RS16775 PF02954 Bacterial regulatory protein, Fis family HW988_RS16790 PF02405 Permease MlaE HW988_RS16795 PF00005 ABC transporter HW988_RS16820 PF01134 Glucose inhibited division protein A HW988_RS16835 PF00265 Thymidine kinase HW988_RS16840 PF00497 Bacterial extracellular solute-binding proteins, family 3 HW988_RS16840 PF01464 Transglycosylase SLT domain HW988_RS16850 PF01380 SIS domain HW988_RS16855 PF00132 Bacterial transferase hexapeptide (six repeats) HW988_RS16855 PF12804 MobA-like NTP transferase domain HW988_RS16860 PF00246 Zinc carboxypeptidase HW988_RS16870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS16870 PF00072 Response regulator receiver domain HW988_RS16875 PF02954 Bacterial regulatory protein, Fis family HW988_RS16875 PF00072 Response regulator receiver domain HW988_RS16875 PF00158 Sigma-54 interaction domain HW988_RS16880 PF13091 PLD-like domain HW988_RS16880 PF13396 Phospholipase_D-nuclease N-terminal HW988_RS16890 PF00491 Arginase family HW988_RS16895 PF00633 Helix-hairpin-helix motif HW988_RS16895 PF14815 NUDIX domain HW988_RS16895 PF00730 HhH-GPD superfamily base excision DNA repair protein HW988_RS16925 PF00490 Delta-aminolevulinic acid dehydratase HW988_RS16935 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HW988_RS16935 PF03900 Porphobilinogen deaminase, C-terminal domain HW988_RS16940 PF00202 Aminotransferase class-III HW988_RS16945 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS16945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS16950 PF00072 Response regulator receiver domain HW988_RS16950 PF00486 Transcriptional regulatory protein, C terminal HW988_RS16955 PF01208 Uroporphyrinogen decarboxylase (URO-D) HW988_RS16960 PF04055 Radical SAM superfamily HW988_RS16960 PF06969 HemN C-terminal domain HW988_RS16965 PF01593 Flavin containing amine oxidoreductase HW988_RS16970 PF00762 Ferrochelatase HW988_RS16990 PF00270 DEAD/DEAH box helicase HW988_RS16990 PF00271 Helicase conserved C-terminal domain HW988_RS16990 PF12300 ATP-dependent RNA helicase RhlB HW988_RS16995 PF12697 Alpha/beta hydrolase family HW988_RS17000 PF01743 Poly A polymerase head domain HW988_RS17000 PF12626 Polymerase A arginine-rich C-terminus HW988_RS17000 PF12627 Probable RNA and SrmB- binding site of polymerase A HW988_RS17005 PF18415 Histidine kinase receptor ArcB trans-membrane domain HW988_RS17005 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS17005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS17005 PF00072 Response regulator receiver domain HW988_RS17005 PF00989 PAS fold HW988_RS17005 PF01627 Hpt domain HW988_RS17010 PF01339 CheB methylesterase HW988_RS17010 PF00072 Response regulator receiver domain HW988_RS17015 PF01739 CheR methyltransferase, SAM binding domain HW988_RS17015 PF03705 CheR methyltransferase, all-alpha domain HW988_RS17020 PF09078 CheY binding HW988_RS17020 PF01627 Hpt domain HW988_RS17020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS17020 PF02895 Signal transducing histidine kinase, homodimeric domain HW988_RS17020 PF01584 CheW-like domain HW988_RS17025 PF01584 CheW-like domain HW988_RS17035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HW988_RS17040 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HW988_RS17040 PF02779 Transketolase, pyrimidine binding domain HW988_RS17040 PF02780 Transketolase, C-terminal domain HW988_RS17045 PF00962 Adenosine/AMP deaminase HW988_RS17055 PF00561 alpha/beta hydrolase fold HW988_RS17070 PF12697 Alpha/beta hydrolase family HW988_RS17075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HW988_RS17085 PF01817 Chorismate mutase type II HW988_RS17085 PF00793 DAHP synthetase I family HW988_RS17090 PF01209 ubiE/COQ5 methyltransferase family HW988_RS17100 PF01814 Hemerythrin HHE cation binding domain HW988_RS17105 PF01063 Amino-transferase class IV HW988_RS17115 PF00378 Enoyl-CoA hydratase/isomerase HW988_RS17120 PF01264 Chorismate synthase HW988_RS17125 PF01202 Shikimate kinase HW988_RS17130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HW988_RS17135 PF01761 3-dehydroquinate synthase HW988_RS17145 PF03167 Uracil DNA glycosylase superfamily HW988_RS17175 PF01726 LexA DNA binding domain HW988_RS17175 PF00717 Peptidase S24-like HW988_RS17190 PF01258 Prokaryotic dksA/traR C4-type zinc finger HW988_RS17200 PF00440 Bacterial regulatory proteins, tetR family HW988_RS17220 PF03372 Endonuclease/Exonuclease/phosphatase family HW988_RS17245 PF17820 PDZ domain HW988_RS17245 PF03572 Peptidase family S41 HW988_RS17245 PF01471 Putative peptidoglycan binding domain HW988_RS17250 PF01370 NAD dependent epimerase/dehydratase family HW988_RS17280 PF01872 RibD C-terminal domain HW988_RS17280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HW988_RS17285 PF05970 PIF1-like helicase HW988_RS17295 PF00581 Rhodanese-like domain HW988_RS17330 PF02548 Ketopantoate hydroxymethyltransferase HW988_RS17335 PF02569 Pantoate-beta-alanine ligase HW988_RS17340 PF04127 DNA / pantothenate metabolism flavoprotein HW988_RS17340 PF02441 Flavoprotein HW988_RS17345 PF03309 Type III pantothenate kinase HW988_RS17350 PF02261 Aspartate decarboxylase HW988_RS17370 PF04463 Protein of unknown function (DUF523) HW988_RS17375 PF00005 ABC transporter HW988_RS17375 PF12848 ABC transporter HW988_RS17390 PF12848 ABC transporter HW988_RS17390 PF16326 ABC transporter C-terminal domain HW988_RS17390 PF00005 ABC transporter HW988_RS17405 PF00682 HMGL-like HW988_RS17410 PF00364 Biotin-requiring enzyme HW988_RS17415 PF00289 Biotin carboxylase, N-terminal domain HW988_RS17415 PF02785 Biotin carboxylase C-terminal domain HW988_RS17415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HW988_RS17420 PF00892 EamA-like transporter family HW988_RS17425 PF00378 Enoyl-CoA hydratase/isomerase HW988_RS17430 PF01039 Carboxyl transferase domain HW988_RS17460 PF00005 ABC transporter HW988_RS17490 PF00875 DNA photolyase HW988_RS17490 PF03441 FAD binding domain of DNA photolyase HW988_RS17500 PF00072 Response regulator receiver domain HW988_RS17500 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS17500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS17500 PF00672 HAMP domain HW988_RS17500 PF17149 Periplasmic sensor domain found in signal transduction proteins HW988_RS17500 PF01627 Hpt domain HW988_RS17510 PF10672 S-adenosylmethionine-dependent methyltransferase HW988_RS17515 PF17284 Spermidine synthase tetramerisation domain HW988_RS17520 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HW988_RS17520 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HW988_RS17545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS17545 PF03466 LysR substrate binding domain HW988_RS17555 PF04389 Peptidase family M28 HW988_RS17585 PF00571 CBS domain HW988_RS17590 PF00579 tRNA synthetases class I (W and Y) HW988_RS17595 PF13460 NAD(P)H-binding HW988_RS17595 PF11066 Protein of unknown function (DUF2867) HW988_RS17600 PF09382 RQC domain HW988_RS17600 PF16124 RecQ zinc-binding HW988_RS17600 PF00570 HRDC domain HW988_RS17600 PF00271 Helicase conserved C-terminal domain HW988_RS17600 PF00270 DEAD/DEAH box helicase HW988_RS17605 PF00248 Aldo/keto reductase family HW988_RS17630 PF00005 ABC transporter HW988_RS17630 PF12848 ABC transporter HW988_RS17670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HW988_RS17690 PF03466 LysR substrate binding domain HW988_RS17690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS17695 PF00857 Isochorismatase family HW988_RS17700 PF01979 Amidohydrolase family HW988_RS17705 PF17954 Quercetinase C-terminal cupin domain HW988_RS17705 PF02678 Pirin HW988_RS17715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HW988_RS17725 PF02203 Tar ligand binding domain homologue HW988_RS17725 PF00672 HAMP domain HW988_RS17725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HW988_RS17730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HW988_RS17730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HW988_RS17745 PF03372 Endonuclease/Exonuclease/phosphatase family HW988_RS17750 PF05368 NmrA-like family HW988_RS17755 PF01638 HxlR-like helix-turn-helix HW988_RS17785 PF00011 Hsp20/alpha crystallin family HW988_RS17790 PF04227 Indigoidine synthase A like protein HW988_RS17795 PF07703 Alpha-2-macroglobulin bait region domain HW988_RS17795 PF01835 MG2 domain HW988_RS17795 PF00207 Alpha-2-macroglobulin family HW988_RS17800 PF00905 Penicillin binding protein transpeptidase domain HW988_RS17800 PF00912 Transglycosylase HW988_RS17810 PF02350 UDP-N-acetylglucosamine 2-epimerase HW988_RS17820 PF13632 Glycosyl transferase family group 2 HW988_RS17820 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HW988_RS17865 PF00141 Peroxidase HW988_RS17880 PF08818 Domain of unknown function (DU1801) HW988_RS17900 PF12697 Alpha/beta hydrolase family HW988_RS17910 PF01022 Bacterial regulatory protein, arsR family HW988_RS17925 PF00892 EamA-like transporter family HW988_RS17940 PF07859 alpha/beta hydrolase fold HW988_RS17940 PF00331 Glycosyl hydrolase family 10 HW988_RS17990 PF01636 Phosphotransferase enzyme family HW988_RS18005 PF00180 Isocitrate/isopropylmalate dehydrogenase HW988_RS18015 PF16363 GDP-mannose 4,6 dehydratase HW988_RS18020 PF02780 Transketolase, C-terminal domain HW988_RS18020 PF02779 Transketolase, pyrimidine binding domain HW988_RS18025 PF00456 Transketolase, thiamine diphosphate binding domain HW988_RS18030 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HW988_RS18045 PF00535 Glycosyl transferase family 2 HW988_RS18060 PF01370 NAD dependent epimerase/dehydratase family HW988_RS18095 PF04264 YceI-like domain HW988_RS18120 PF12169 DNA polymerase III subunits gamma and tau domain III HW988_RS18125 PF02575 YbaB/EbfC DNA-binding family HW988_RS18130 PF13662 Toprim domain HW988_RS18130 PF02132 RecR protein HW988_RS18135 PF00025 ADP-ribosylation factor family HW988_RS18140 PF02445 Quinolinate synthetase A protein HW988_RS18190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HW988_RS18190 PF03466 LysR substrate binding domain HW988_RS18195 PF00107 Zinc-binding dehydrogenase HW988_RS18195 PF08240 Alcohol dehydrogenase GroES-like domain HW988_RS18200 PF00756 Putative esterase HW988_RS18215 PF05362 Lon protease (S16) C-terminal proteolytic domain HW988_RS18215 PF02190 ATP-dependent protease La (LON) substrate-binding domain HW988_RS18215 PF00004 ATPase family associated with various cellular activities (AAA) HW988_RS18220 PF02743 Cache domain HW988_RS18220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HW988_RS18220 PF00512 His Kinase A (phospho-acceptor) domain HW988_RS18225 PF00158 Sigma-54 interaction domain HW988_RS18225 PF00072 Response regulator receiver domain HW988_RS18235 PF07724 AAA domain (Cdc48 subfamily) HW988_RS18235 PF10431 C-terminal, D2-small domain, of ClpB protein HW988_RS18235 PF06689 ClpX C4-type zinc finger HW988_RS18240 PF00574 Clp protease HW988_RS18245 PF00883 Cytosol aminopeptidase family, catalytic domain HW988_RS18245 PF02789 Cytosol aminopeptidase family, N-terminal domain HW988_RS18250 PF13091 PLD-like domain HW988_RS18275 PF02374 Anion-transporting ATPase HW988_RS18280 PF02374 Anion-transporting ATPase HW988_RS18285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HW988_RS18285 PF05698 Bacterial trigger factor protein (TF) C-terminus HW988_RS18285 PF05697 Bacterial trigger factor protein (TF) HW988_RS18295 PF00561 alpha/beta hydrolase fold HW988_RS18305 PF03572 Peptidase family S41 HW988_RS18305 PF13180 PDZ domain HW988_RS18320 PF00005 ABC transporter HW988_RS18335 PF01741 Large-conductance mechanosensitive channel, MscL HW988_RS18345 PF00912 Transglycosylase HW988_RS18345 PF17092 Penicillin-binding protein OB-like domain HW988_RS18345 PF00905 Penicillin binding protein transpeptidase domain HW988_RS18350 PF00005 ABC transporter HW988_RS18350 PF17755 UvrA DNA-binding domain HW988_RS18350 PF17760 UvrA interaction domain HW988_RS18355 PF00005 ABC transporter HW988_RS18355 PF00664 ABC transporter transmembrane region HW988_RS18365 PF01590 GAF domain HW988_RS18365 PF02954 Bacterial regulatory protein, Fis family HW988_RS18365 PF00158 Sigma-54 interaction domain HW988_RS18375 PF01636 Phosphotransferase enzyme family HW988_RS18380 PF00132 Bacterial transferase hexapeptide (six repeats) HW988_RS18380 PF12804 MobA-like NTP transferase domain HW988_RS18405 PF00933 Glycosyl hydrolase family 3 N terminal domain HW988_RS18405 PF01915 Glycosyl hydrolase family 3 C-terminal domain HW988_RS18430 PF00483 Nucleotidyl transferase HW988_RS18440 PF17764 3′ DNA-binding domain (3′BD) HW988_RS18440 PF04851 Type III restriction enzyme, res subunit HW988_RS18440 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HW988_RS18440 PF00271 Helicase conserved C-terminal domain HW988_RS18440 PF18074 Primosomal protein N C-terminal domain HW988_RS18455 PF00318 Ribosomal protein S2 HW988_RS18460 PF00889 Elongation factor TS HW988_RS18465 PF00696 Amino acid kinase family HW988_RS18470 PF01765 Ribosome recycling factor HW988_RS18475 PF01255 Putative undecaprenyl diphosphate synthase HW988_RS18485 PF17820 PDZ domain HW988_RS18485 PF02163 Peptidase family M50 HW988_RS18490 PF00814 Glycoprotease family HW988_RS18505 PF00849 RNA pseudouridylate synthase HW988_RS18515 PF02245 Methylpurine-DNA glycosylase (MPG) HW988_RS18520 PF00210 Ferritin-like domain HW988_RS18530 PF01053 Cys/Met metabolism PLP-dependent enzyme HW988_RS18535 PF00291 Pyridoxal-phosphate dependent enzyme HW988_RS18535 PF00571 CBS domain HW988_RS18565 PF02405 Permease MlaE HW988_RS18570 PF02405 Permease MlaE HW988_RS18575 PF00005 ABC transporter HW988_RS18580 PF00005 ABC transporter HW988_RS18585 PF00549 CoA-ligase HW988_RS18585 PF08442 ATP-grasp domain HW988_RS18590 PF00549 CoA-ligase HW988_RS18590 PF02629 CoA binding domain HW988_RS18620 PF13180 PDZ domain HW988_RS18620 PF17820 PDZ domain HW988_RS18635 PF00334 Nucleoside diphosphate kinase HW988_RS18640 PF05958 tRNA (Uracil-5-)-methyltransferase HW988_RS18650 PF13464 Domain of unknown function (DUF4115) HW988_RS18665 PF00970 Oxidoreductase FAD-binding domain HW988_RS18665 PF00111 2Fe-2S iron-sulfur cluster binding domain HW988_RS18665 PF00175 Oxidoreductase NAD-binding domain HW988_RS18670 PF00929 Exonuclease HW988_RS18670 PF14579 Helix-hairpin-helix motif HW988_RS18670 PF02811 PHP domain HW988_RS18670 PF07733 Bacterial DNA polymerase III alpha NTPase domain HW988_RS18670 PF11490 DNA polymerase III polC-type N-terminus II HW988_RS18670 PF14480 DNA polymerase III polC-type N-terminus I HW988_RS18670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HW988_RS18675 PF02540 NAD synthase HW988_RS18675 PF00795 Carbon-nitrogen hydrolase HW988_RS18695 PF00919 Uncharacterized protein family UPF0004 HW988_RS18695 PF18693 TRAM domain HW988_RS18695 PF04055 Radical SAM superfamily HW988_RS18715 PF02590 Predicted SPOUT methyltransferase HW988_RS18720 PF01467 Cytidylyltransferase-like HW988_RS18725 PF01018 GTP1/OBG HW988_RS18725 PF01926 50S ribosome-binding GTPase HW988_RS18730 PF01016 Ribosomal L27 protein HW988_RS18735 PF00829 Ribosomal prokaryotic L21 protein HW988_RS18745 PF00575 S1 RNA binding domain HW988_RS18745 PF10150 Ribonuclease E/G family HW988_RS18750 PF00437 Type II/IV secretion system protein HW988_RS18755 PF01791 DeoC/LacD family aldolase HW988_RS18760 PF02885 Glycosyl transferase family, helical bundle domain HW988_RS18760 PF00591 Glycosyl transferase family, a/b domain HW988_RS18760 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HW988_RS18765 PF01048 Phosphorylase superfamily HW988_RS18775 PF00082 Subtilase family HW988_RS18780 PF01039 Carboxyl transferase domain HW988_RS18785 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HW988_RS18785 PF00289 Biotin carboxylase, N-terminal domain HW988_RS18785 PF02785 Biotin carboxylase C-terminal domain HW988_RS18790 PF00682 HMGL-like HW988_RS18790 PF02785 Biotin carboxylase C-terminal domain HW988_RS18790 PF00289 Biotin carboxylase, N-terminal domain HW988_RS18790 PF00364 Biotin-requiring enzyme HW988_RS18790 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HW988_RS18790 PF02436 Conserved carboxylase domain HW988_RS18795 PF00902 Sec-independent protein translocase protein (TatC) HW988_RS18800 PF02416 mttA/Hcf106 family HW988_RS18810 PF02569 Pantoate-beta-alanine ligase HW988_RS18820 PF00675 Insulinase (Peptidase family M16) HW988_RS18820 PF05193 Peptidase M16 inactive domain HW988_RS18825 PF04055 Radical SAM superfamily HW988_RS18830 PF01025 GrpE HW988_RS18835 PF00226 DnaJ domain HW988_RS18835 PF01556 DnaJ C terminal domain HW988_RS18835 PF00684 DnaJ central domain HW988_RS18855 PF05362 Lon protease (S16) C-terminal proteolytic domain HW988_RS18855 PF02190 ATP-dependent protease La (LON) substrate-binding domain HW988_RS18855 PF00004 ATPase family associated with various cellular activities (AAA) HW988_RS18900 PF00361 Proton-conducting membrane transporter HW988_RS18905 PF00361 Proton-conducting membrane transporter HW988_RS18905 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus HW988_RS18910 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HW988_RS18910 PF00361 Proton-conducting membrane transporter HW988_RS18915 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HW988_RS18920 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HW988_RS18925 PF00146 NADH dehydrogenase HW988_RS18930 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HW988_RS18935 PF17757 UvrB interaction domain HW988_RS18935 PF00271 Helicase conserved C-terminal domain HW988_RS18935 PF03461 TRCF domain HW988_RS18935 PF02559 CarD-like/TRCF domain HW988_RS18935 PF00270 DEAD/DEAH box helicase HW988_RS18945 PF00933 Glycosyl hydrolase family 3 N terminal domain HW988_RS18945 PF01915 Glycosyl hydrolase family 3 C-terminal domain HW988_RS18950 PF02151 UvrB/uvrC motif HW988_RS18950 PF01541 GIY-YIG catalytic domain HW988_RS18950 PF08459 UvrC Helix-hairpin-helix N-terminal HW988_RS18950 PF12826 Helix-hairpin-helix motif HW988_RS18955 PF04851 Type III restriction enzyme, res subunit HW988_RS18955 PF00929 Exonuclease HW988_RS18955 PF13307 Helicase C-terminal domain HW988_RS18965 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HW988_RS18970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HW988_RS18970 PF02874 ATP synthase alpha/beta family, beta-barrel domain HW988_RS18975 PF00231 ATP synthase HW988_RS18980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HW988_RS18980 PF00306 ATP synthase alpha/beta chain, C terminal domain HW988_RS18980 PF02874 ATP synthase alpha/beta family, beta-barrel domain HW988_RS18985 PF00213 ATP synthase delta (OSCP) subunit HW988_RS18990 PF00430 ATP synthase B/B' CF(0) HW988_RS19005 PF02195 ParB-like nuclease domain HW988_RS19005 PF17762 HTH domain found in ParB protein HW988_RS19010 PF13614 AAA domain HW988_RS19020 PF02527 rRNA small subunit methyltransferase G HW988_RS19025 PF01134 Glucose inhibited division protein A HW988_RS19025 PF13932 GidA associated domain HW988_RS19030 PF12631 MnmE helical domain HW988_RS19030 PF01926 50S ribosome-binding GTPase HW988_RS19030 PF10396 GTP-binding protein TrmE N-terminus HW988_RS19040 PF14849 YidC periplasmic domain HW988_RS19040 PF02096 60Kd inner membrane protein HW988_RS19045 PF01809 Putative membrane protein insertion efficiency factor HW988_RS19050 PF00825 Ribonuclease P HW988_RS19055 PF00468 Ribosomal protein L34