locus-tag class description HF888_RS00010 PF00580 UvrD/REP helicase N-terminal domain HF888_RS00010 PF13361 UvrD-like helicase C-terminal domain HF888_RS00015 PF00581 Rhodanese-like domain HF888_RS00020 PF00578 AhpC/TSA family HF888_RS00020 PF10417 C-terminal domain of 1-Cys peroxiredoxin HF888_RS00025 PF00593 TonB dependent receptor HF888_RS00025 PF07660 Secretin and TonB N terminus short domain HF888_RS00025 PF07715 TonB-dependent Receptor Plug Domain HF888_RS00045 PF01435 Peptidase family M48 HF888_RS00050 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS00050 PF00072 Response regulator receiver domain HF888_RS00060 PF01323 DSBA-like thioredoxin domain HF888_RS00065 PF00034 Cytochrome c HF888_RS00070 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HF888_RS00075 PF01926 50S ribosome-binding GTPase HF888_RS00090 PF00476 DNA polymerase family A HF888_RS00090 PF01367 5'-3' exonuclease, C-terminal SAM fold HF888_RS00090 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HF888_RS00090 PF01612 3'-5' exonuclease HF888_RS00100 PF01636 Phosphotransferase enzyme family HF888_RS00105 PF10017 Histidine-specific methyltransferase, SAM-dependent HF888_RS00110 PF12867 DinB superfamily HF888_RS00110 PF03781 Sulfatase-modifying factor enzyme 1 HF888_RS00115 PF01297 Zinc-uptake complex component A periplasmic HF888_RS00120 PF00005 ABC transporter HF888_RS00125 PF00950 ABC 3 transport family HF888_RS00130 PF02630 SCO1/SenC HF888_RS00135 PF01554 MatE HF888_RS00145 PF01068 ATP dependent DNA ligase domain HF888_RS00145 PF14743 DNA ligase OB-like domain HF888_RS00150 PF00132 Bacterial transferase hexapeptide (six repeats) HF888_RS00155 PF01432 Peptidase family M3 HF888_RS00175 PF00072 Response regulator receiver domain HF888_RS00180 PF01380 SIS domain HF888_RS00185 PF12804 MobA-like NTP transferase domain HF888_RS00185 PF14602 Hexapeptide repeat of succinyl-transferase HF888_RS00185 PF00132 Bacterial transferase hexapeptide (six repeats) HF888_RS00200 PF08019 Phosphoethanolamine transferase EptA/EptB HF888_RS00200 PF00884 Sulfatase HF888_RS00205 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HF888_RS00205 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HF888_RS00210 PF02874 ATP synthase alpha/beta family, beta-barrel domain HF888_RS00210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HF888_RS00215 PF00231 ATP synthase HF888_RS00220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HF888_RS00220 PF00306 ATP synthase alpha/beta chain, C terminal domain HF888_RS00220 PF02874 ATP synthase alpha/beta family, beta-barrel domain HF888_RS00225 PF00213 ATP synthase delta (OSCP) subunit HF888_RS00230 PF00430 ATP synthase B/B' CF(0) HF888_RS00235 PF00137 ATP synthase subunit C HF888_RS00240 PF00119 ATP synthase A chain HF888_RS00245 PF03899 ATP synthase I chain HF888_RS00250 PF17762 HTH domain found in ParB protein HF888_RS00250 PF02195 ParB-like nuclease domain HF888_RS00255 PF13614 AAA domain HF888_RS00260 PF02527 rRNA small subunit methyltransferase G HF888_RS00265 PF01134 Glucose inhibited division protein A HF888_RS00265 PF13932 GidA associated domain HF888_RS00275 PF01926 50S ribosome-binding GTPase HF888_RS00275 PF12631 MnmE helical domain HF888_RS00275 PF10396 GTP-binding protein TrmE N-terminus HF888_RS00280 PF14849 YidC periplasmic domain HF888_RS00280 PF02096 60Kd inner membrane protein HF888_RS00285 PF01809 Putative membrane protein insertion efficiency factor HF888_RS00290 PF00825 Ribonuclease P HF888_RS00295 PF00468 Ribosomal protein L34 HF888_RS00300 PF00308 Bacterial dnaA protein HF888_RS00300 PF08299 Bacterial dnaA protein helix-turn-helix HF888_RS00300 PF11638 DnaA N-terminal domain HF888_RS00305 PF02768 DNA polymerase III beta subunit, C-terminal domain HF888_RS00305 PF00712 DNA polymerase III beta subunit, N-terminal domain HF888_RS00305 PF02767 DNA polymerase III beta subunit, central domain HF888_RS00310 PF02463 RecF/RecN/SMC N terminal domain HF888_RS00315 PF00204 DNA gyrase B HF888_RS00315 PF00986 DNA gyrase B subunit, carboxyl terminus HF888_RS00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS00315 PF01751 Toprim domain HF888_RS00315 PF18053 DNA gyrase B subunit insert domain HF888_RS00330 PF05746 DALR anticodon binding domain HF888_RS00330 PF02092 Glycyl-tRNA synthetase beta subunit HF888_RS00335 PF02091 Glycyl-tRNA synthetase alpha subunit HF888_RS00345 PF00072 Response regulator receiver domain HF888_RS00345 PF00486 Transcriptional regulatory protein, C terminal HF888_RS00350 PF03279 Bacterial lipid A biosynthesis acyltransferase HF888_RS00355 PF02386 Cation transport protein HF888_RS00360 PF02080 TrkA-C domain HF888_RS00360 PF02254 TrkA-N domain HF888_RS00365 PF01029 NusB family HF888_RS00365 PF01189 16S rRNA methyltransferase RsmB/F HF888_RS00370 PF02911 Formyl transferase, C-terminal domain HF888_RS00370 PF00551 Formyl transferase HF888_RS00375 PF01327 Polypeptide deformylase HF888_RS00385 PF17782 DprA winged helix domain HF888_RS00385 PF02481 DNA recombination-mediator protein A HF888_RS00390 PF01300 Telomere recombination HF888_RS00395 PF01218 Coproporphyrinogen III oxidase HF888_RS00400 PF01488 Shikimate / quinate 5-dehydrogenase HF888_RS00400 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HF888_RS00400 PF08501 Shikimate dehydrogenase substrate binding domain HF888_RS00410 PF01380 SIS domain HF888_RS00410 PF01418 Helix-turn-helix domain, rpiR family HF888_RS00415 PF13361 UvrD-like helicase C-terminal domain HF888_RS00415 PF00580 UvrD/REP helicase N-terminal domain HF888_RS00425 PF03480 Bacterial extracellular solute-binding protein, family 7 HF888_RS00445 PF03061 Thioesterase superfamily HF888_RS00450 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HF888_RS00460 PF12849 PBP superfamily domain HF888_RS00465 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS00470 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS00475 PF00005 ABC transporter HF888_RS00480 PF01895 PhoU domain HF888_RS00510 PF00588 SpoU rRNA Methylase family HF888_RS00510 PF12105 SpoU, rRNA methylase, C-terminal HF888_RS00515 PF00072 Response regulator receiver domain HF888_RS00520 PF11808 Phosphate regulon sensor protein PhoR HF888_RS00520 PF00989 PAS fold HF888_RS00520 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS00525 PF00072 Response regulator receiver domain HF888_RS00525 PF00486 Transcriptional regulatory protein, C terminal HF888_RS00530 PF01040 UbiA prenyltransferase family HF888_RS00535 PF04345 Chorismate lyase HF888_RS00540 PF12833 Helix-turn-helix domain HF888_RS00540 PF01965 DJ-1/PfpI family HF888_RS00550 PF00301 Rubredoxin HF888_RS00555 PF18113 Rubredoxin binding C-terminal domain HF888_RS00555 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS00560 PF00216 Bacterial DNA-binding protein HF888_RS00570 PF00375 Sodium:dicarboxylate symporter family HF888_RS00590 PF00271 Helicase conserved C-terminal domain HF888_RS00590 PF17191 RecG wedge domain HF888_RS00590 PF00270 DEAD/DEAH box helicase HF888_RS00595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS00595 PF03466 LysR substrate binding domain HF888_RS00605 PF01266 FAD dependent oxidoreductase HF888_RS00615 PF13006 Insertion element 4 transposase N-terminal HF888_RS00615 PF01609 Transposase DDE domain HF888_RS00625 PF06827 Zinc finger found in FPG and IleRS HF888_RS00625 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HF888_RS00625 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HF888_RS00630 PF00471 Ribosomal protein L33 HF888_RS00635 PF00830 Ribosomal L28 family HF888_RS00640 PF01295 Adenylate cyclase, class-I HF888_RS00640 PF12633 Adenylate cyclase NT domain HF888_RS00650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HF888_RS00650 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HF888_RS00655 PF01678 Diaminopimelate epimerase HF888_RS00670 PF01738 Dienelactone hydrolase family HF888_RS00675 PF12833 Helix-turn-helix domain HF888_RS00680 PF00497 Bacterial extracellular solute-binding proteins, family 3 HF888_RS00680 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS00680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS00685 PF02698 DUF218 domain HF888_RS00695 PF04241 Protein of unknown function (DUF423) HF888_RS00710 PF06969 HemN C-terminal domain HF888_RS00710 PF04055 Radical SAM superfamily HF888_RS00715 PF01725 Ham1 family HF888_RS00725 PF00561 alpha/beta hydrolase fold HF888_RS00725 PF07021 Methionine biosynthesis protein MetW HF888_RS00730 PF00561 alpha/beta hydrolase fold HF888_RS00735 PF02325 YGGT family HF888_RS00740 PF01138 3' exoribonuclease family, domain 1 HF888_RS00740 PF03725 3' exoribonuclease family, domain 2 HF888_RS00745 PF03755 YicC-like family, N-terminal region HF888_RS00745 PF08340 Domain of unknown function (DUF1732) HF888_RS00750 PF00563 EAL domain HF888_RS00750 PF03707 Bacterial signalling protein N terminal repeat HF888_RS00750 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS00755 PF00625 Guanylate kinase HF888_RS00760 PF01192 RNA polymerase Rpb6 HF888_RS00765 PF02824 TGS domain HF888_RS00765 PF13291 ACT domain HF888_RS00765 PF04607 Region found in RelA / SpoT proteins HF888_RS00770 PF01042 Endoribonuclease L-PSP HF888_RS00775 PF14698 Argininosuccinate lyase C-terminal HF888_RS00775 PF00206 Lyase HF888_RS00780 PF07694 5TMR of 5TMR-LYT HF888_RS00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS00780 PF06580 Histidine kinase HF888_RS00785 PF04397 LytTr DNA-binding domain HF888_RS00785 PF00072 Response regulator receiver domain HF888_RS00790 PF00977 Histidine biosynthesis protein HF888_RS00795 PF00117 Glutamine amidotransferase class-I HF888_RS00800 PF00475 Imidazoleglycerol-phosphate dehydratase HF888_RS00820 PF00563 EAL domain HF888_RS00820 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS00820 PF03707 Bacterial signalling protein N terminal repeat HF888_RS00825 PF00633 Helix-hairpin-helix motif HF888_RS00825 PF00730 HhH-GPD superfamily base excision DNA repair protein HF888_RS00825 PF14815 NUDIX domain HF888_RS00830 PF04362 Bacterial Fe(2+) trafficking HF888_RS00860 PF00563 EAL domain HF888_RS00860 PF00360 Phytochrome region HF888_RS00860 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS00860 PF01590 GAF domain HF888_RS00865 PF00140 Sigma-70 factor, region 1.2 HF888_RS00865 PF04542 Sigma-70 region 2 HF888_RS00865 PF04545 Sigma-70, region 4 HF888_RS00870 PF18075 FtsX extracellular domain HF888_RS00875 PF00005 ABC transporter HF888_RS00880 PF02881 SRP54-type protein, helical bundle domain HF888_RS00880 PF00448 SRP54-type protein, GTPase domain HF888_RS00900 PF08360 QacR-like protein, C-terminal region HF888_RS00900 PF00440 Bacterial regulatory proteins, tetR family HF888_RS00905 PF00171 Aldehyde dehydrogenase family HF888_RS00915 PF05199 GMC oxidoreductase HF888_RS00915 PF00732 GMC oxidoreductase HF888_RS00920 PF01467 Cytidylyltransferase-like HF888_RS00925 PF00037 4Fe-4S binding domain HF888_RS00935 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HF888_RS00935 PF17810 Arginine decarboxylase helical bundle domain HF888_RS00935 PF17944 Arginine decarboxylase C-terminal helical extension HF888_RS00940 PF03435 Saccharopine dehydrogenase NADP binding domain HF888_RS00940 PF16653 Saccharopine dehydrogenase C-terminal domain HF888_RS00945 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HF888_RS00950 PF00491 Arginase family HF888_RS00955 PF03109 ABC1 family HF888_RS00965 PF13091 PLD-like domain HF888_RS00975 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HF888_RS00975 PF01627 Hpt domain HF888_RS00975 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS00975 PF00672 HAMP domain HF888_RS00975 PF00072 Response regulator receiver domain HF888_RS00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS00985 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS00985 PF03707 Bacterial signalling protein N terminal repeat HF888_RS00985 PF00563 EAL domain HF888_RS00990 PF01145 SPFH domain / Band 7 family HF888_RS01020 PF06039 Malate:quinone oxidoreductase (Mqo) HF888_RS01025 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HF888_RS01025 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HF888_RS01030 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HF888_RS01035 PF02233 NAD(P) transhydrogenase beta subunit HF888_RS01045 PF07690 Major Facilitator Superfamily HF888_RS01080 PF04542 Sigma-70 region 2 HF888_RS01080 PF08281 Sigma-70, region 4 HF888_RS01085 PF03797 Autotransporter beta-domain HF888_RS01085 PF00082 Subtilase family HF888_RS01170 PF00483 Nucleotidyl transferase HF888_RS01170 PF01050 Mannose-6-phosphate isomerase HF888_RS01175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HF888_RS01185 PF00440 Bacterial regulatory proteins, tetR family HF888_RS01190 PF00696 Amino acid kinase family HF888_RS01195 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HF888_RS01195 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HF888_RS01195 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HF888_RS01195 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HF888_RS01200 PF00692 dUTPase HF888_RS01205 PF02441 Flavoprotein HF888_RS01205 PF04127 DNA / pantothenate metabolism flavoprotein HF888_RS01210 PF04002 RadC-like JAB domain HF888_RS01225 PF14748 Pyrroline-5-carboxylate reductase dimerisation HF888_RS01225 PF03807 NADP oxidoreductase coenzyme F420-dependent HF888_RS01230 PF01168 Alanine racemase, N-terminal domain HF888_RS01235 PF00437 Type II/IV secretion system protein HF888_RS01240 PF00437 Type II/IV secretion system protein HF888_RS01250 PF00106 short chain dehydrogenase HF888_RS01255 PF00175 Oxidoreductase NAD-binding domain HF888_RS01255 PF00970 Oxidoreductase FAD-binding domain HF888_RS01255 PF00111 2Fe-2S iron-sulfur cluster binding domain HF888_RS01260 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HF888_RS01265 PF07497 Rho termination factor, RNA-binding domain HF888_RS01265 PF07498 Rho termination factor, N-terminal domain HF888_RS01265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HF888_RS01270 PF00085 Thioredoxin HF888_RS01275 PF02541 Ppx/GppA phosphatase family HF888_RS01280 PF04748 Divergent polysaccharide deacetylase HF888_RS01285 PF03572 Peptidase family S41 HF888_RS01285 PF13180 PDZ domain HF888_RS01290 PF01551 Peptidase family M23 HF888_RS01295 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HF888_RS01295 PF01676 Metalloenzyme superfamily HF888_RS01300 PF00581 Rhodanese-like domain HF888_RS01305 PF02556 Preprotein translocase subunit SecB HF888_RS01315 PF17785 PUA-like domain HF888_RS01315 PF10672 S-adenosylmethionine-dependent methyltransferase HF888_RS01330 PF00293 NUDIX domain HF888_RS01335 PF01590 GAF domain HF888_RS01335 PF00391 PEP-utilising enzyme, mobile domain HF888_RS01335 PF02896 PEP-utilising enzyme, TIM barrel domain HF888_RS01335 PF05524 PEP-utilising enzyme, N-terminal HF888_RS01345 PF04452 RNA methyltransferase HF888_RS01355 PF02219 Methylenetetrahydrofolate reductase HF888_RS01360 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HF888_RS01360 PF05221 S-adenosyl-L-homocysteine hydrolase HF888_RS01365 PF02772 S-adenosylmethionine synthetase, central domain HF888_RS01365 PF02773 S-adenosylmethionine synthetase, C-terminal domain HF888_RS01365 PF00438 S-adenosylmethionine synthetase, N-terminal domain HF888_RS01370 PF01022 Bacterial regulatory protein, arsR family HF888_RS01380 PF00459 Inositol monophosphatase family HF888_RS01385 PF00293 NUDIX domain HF888_RS01390 PF13419 Haloacid dehalogenase-like hydrolase HF888_RS01395 PF01479 S4 domain HF888_RS01400 PF01430 Hsp33 protein HF888_RS01405 PF01293 Phosphoenolpyruvate carboxykinase HF888_RS01410 PF05951 Bacterial protein of unknown function (DUF882) HF888_RS01415 PF01471 Putative peptidoglycan binding domain HF888_RS01415 PF03734 L,D-transpeptidase catalytic domain HF888_RS01425 PF01925 Sulfite exporter TauE/SafE HF888_RS01430 PF01790 Prolipoprotein diacylglyceryl transferase HF888_RS01435 PF00303 Thymidylate synthase HF888_RS01445 PF00186 Dihydrofolate reductase HF888_RS01450 PF01590 GAF domain HF888_RS01450 PF00563 EAL domain HF888_RS01450 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS01450 PF00360 Phytochrome region HF888_RS01455 PF00582 Universal stress protein family HF888_RS01460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HF888_RS01465 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HF888_RS01470 PF03480 Bacterial extracellular solute-binding protein, family 7 HF888_RS01480 PF00929 Exonuclease HF888_RS01480 PF02811 PHP domain HF888_RS01480 PF07733 Bacterial DNA polymerase III alpha NTPase domain HF888_RS01480 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HF888_RS01480 PF14579 Helix-hairpin-helix motif HF888_RS01485 PF00571 CBS domain HF888_RS01490 PF07687 Peptidase dimerisation domain HF888_RS01490 PF01546 Peptidase family M20/M25/M40 HF888_RS01495 PF00202 Aminotransferase class-III HF888_RS01500 PF01321 Creatinase/Prolidase N-terminal domain HF888_RS01500 PF00557 Metallopeptidase family M24 HF888_RS01505 PF00171 Aldehyde dehydrogenase family HF888_RS01515 PF07690 Major Facilitator Superfamily HF888_RS01530 PF00593 TonB dependent receptor HF888_RS01530 PF07715 TonB-dependent Receptor Plug Domain HF888_RS01535 PF00005 ABC transporter HF888_RS01535 PF08402 TOBE domain HF888_RS01540 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS01540 PF14785 Maltose transport system permease protein MalF P2 domain HF888_RS01545 PF13416 Bacterial extracellular solute-binding protein HF888_RS01565 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS01565 PF00563 EAL domain HF888_RS01565 PF03707 Bacterial signalling protein N terminal repeat HF888_RS01570 PF17764 3′ DNA-binding domain (3′BD) HF888_RS01570 PF18074 Primosomal protein N C-terminal domain HF888_RS01570 PF00271 Helicase conserved C-terminal domain HF888_RS01570 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HF888_RS01570 PF00270 DEAD/DEAH box helicase HF888_RS01575 PF01197 Ribosomal protein L31 HF888_RS01580 PF03949 Malic enzyme, NAD binding domain HF888_RS01580 PF00390 Malic enzyme, N-terminal domain HF888_RS01585 PF03144 Elongation factor Tu domain 2 HF888_RS01585 PF00009 Elongation factor Tu GTP binding domain HF888_RS01585 PF03764 Elongation factor G, domain IV HF888_RS01585 PF14492 Elongation Factor G, domain II HF888_RS01585 PF00679 Elongation factor G C-terminus HF888_RS01610 PF00338 Ribosomal protein S10p/S20e HF888_RS01615 PF00297 Ribosomal protein L3 HF888_RS01620 PF00573 Ribosomal protein L4/L1 family HF888_RS01625 PF00276 Ribosomal protein L23 HF888_RS01630 PF00181 Ribosomal Proteins L2, RNA binding domain HF888_RS01630 PF03947 Ribosomal Proteins L2, C-terminal domain HF888_RS01635 PF00203 Ribosomal protein S19 HF888_RS01640 PF00237 Ribosomal protein L22p/L17e HF888_RS01645 PF00189 Ribosomal protein S3, C-terminal domain HF888_RS01645 PF07650 KH domain HF888_RS01650 PF00252 Ribosomal protein L16p/L10e HF888_RS01655 PF00831 Ribosomal L29 protein HF888_RS01660 PF00366 Ribosomal protein S17 HF888_RS01665 PF00238 Ribosomal protein L14p/L23e HF888_RS01670 PF00467 KOW motif HF888_RS01670 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HF888_RS01675 PF00281 Ribosomal protein L5 HF888_RS01675 PF00673 ribosomal L5P family C-terminus HF888_RS01680 PF00253 Ribosomal protein S14p/S29e HF888_RS01685 PF00410 Ribosomal protein S8 HF888_RS01690 PF00347 Ribosomal protein L6 HF888_RS01695 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HF888_RS01700 PF00333 Ribosomal protein S5, N-terminal domain HF888_RS01700 PF03719 Ribosomal protein S5, C-terminal domain HF888_RS01705 PF00327 Ribosomal protein L30p/L7e HF888_RS01710 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HF888_RS01715 PF00344 SecY translocase HF888_RS01720 PF00444 Ribosomal protein L36 HF888_RS01725 PF00416 Ribosomal protein S13/S18 HF888_RS01730 PF00411 Ribosomal protein S11 HF888_RS01735 PF01479 S4 domain HF888_RS01735 PF00163 Ribosomal protein S4/S9 N-terminal domain HF888_RS01740 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HF888_RS01740 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HF888_RS01740 PF01000 RNA polymerase Rpb3/RpoA insert domain HF888_RS01745 PF01196 Ribosomal protein L17 HF888_RS01750 PF02803 Thiolase, C-terminal domain HF888_RS01750 PF00108 Thiolase, N-terminal domain HF888_RS01760 PF01008 Initiation factor 2 subunit family HF888_RS01765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS01770 PF02261 Aspartate decarboxylase HF888_RS01775 PF02569 Pantoate-beta-alanine ligase HF888_RS01780 PF02548 Ketopantoate hydroxymethyltransferase HF888_RS01785 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HF888_RS01790 PF12626 Polymerase A arginine-rich C-terminus HF888_RS01790 PF01743 Poly A polymerase head domain HF888_RS01790 PF12627 Probable RNA and SrmB- binding site of polymerase A HF888_RS01795 PF00158 Sigma-54 interaction domain HF888_RS01795 PF02954 Bacterial regulatory protein, Fis family HF888_RS01795 PF00072 Response regulator receiver domain HF888_RS01800 PF08447 PAS fold HF888_RS01800 PF00989 PAS fold HF888_RS01800 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS01800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS01805 PF00749 tRNA synthetases class I (E and Q), catalytic domain HF888_RS01810 PF01258 Prokaryotic dksA/traR C4-type zinc finger HF888_RS01815 PF00155 Aminotransferase class I and II HF888_RS01820 PF03749 Sugar fermentation stimulation protein RE domain HF888_RS01820 PF17746 SfsA N-terminal OB domain HF888_RS01835 PF00271 Helicase conserved C-terminal domain HF888_RS01835 PF03880 DbpA RNA binding domain HF888_RS01835 PF00270 DEAD/DEAH box helicase HF888_RS01855 PF03466 LysR substrate binding domain HF888_RS01855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS01865 PF00582 Universal stress protein family HF888_RS01870 PF01740 STAS domain HF888_RS01870 PF00916 Sulfate permease family HF888_RS01875 PF00108 Thiolase, N-terminal domain HF888_RS01875 PF02803 Thiolase, C-terminal domain HF888_RS01890 PF07044 Protein of unknown function (DUF1329) HF888_RS01895 PF00196 Bacterial regulatory proteins, luxR family HF888_RS01895 PF00072 Response regulator receiver domain HF888_RS01905 PF03466 LysR substrate binding domain HF888_RS01905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS01910 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HF888_RS01940 PF02562 PhoH-like protein HF888_RS01940 PF13638 PIN domain HF888_RS01950 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS01955 PF09312 SurA N-terminal domain HF888_RS01955 PF00639 PPIC-type PPIASE domain HF888_RS01965 PF03104 DNA polymerase family B, exonuclease domain HF888_RS01965 PF00136 DNA polymerase family B HF888_RS01970 PF00563 EAL domain HF888_RS01970 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS01970 PF03707 Bacterial signalling protein N terminal repeat HF888_RS01985 PF03466 LysR substrate binding domain HF888_RS01985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS01990 PF00289 Biotin carboxylase, N-terminal domain HF888_RS01990 PF02785 Biotin carboxylase C-terminal domain HF888_RS01990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HF888_RS01995 PF02436 Conserved carboxylase domain HF888_RS01995 PF00364 Biotin-requiring enzyme HF888_RS01995 PF00682 HMGL-like HF888_RS02010 PF01554 MatE HF888_RS02015 PF00202 Aminotransferase class-III HF888_RS02030 PF02774 Semialdehyde dehydrogenase, dimerisation domain HF888_RS02030 PF01118 Semialdehyde dehydrogenase, NAD binding domain HF888_RS02045 PF01521 Iron-sulphur cluster biosynthesis HF888_RS02050 PF03702 Anhydro-N-acetylmuramic acid kinase HF888_RS02055 PF04225 Opacity-associated protein A LysM-like domain HF888_RS02055 PF01551 Peptidase family M23 HF888_RS02060 PF01479 S4 domain HF888_RS02060 PF00579 tRNA synthetases class I (W and Y) HF888_RS02095 PF13307 Helicase C-terminal domain HF888_RS02095 PF00929 Exonuclease HF888_RS02095 PF04851 Type III restriction enzyme, res subunit HF888_RS02100 PF00571 CBS domain HF888_RS02100 PF01380 SIS domain HF888_RS02110 PF00474 Sodium:solute symporter family HF888_RS02125 PF13193 AMP-binding enzyme C-terminal domain HF888_RS02125 PF00501 AMP-binding enzyme HF888_RS02125 PF16177 Acetyl-coenzyme A synthetase N-terminus HF888_RS02130 PF00196 Bacterial regulatory proteins, luxR family HF888_RS02130 PF00072 Response regulator receiver domain HF888_RS02135 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS02135 PF00072 Response regulator receiver domain HF888_RS02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS02135 PF01627 Hpt domain HF888_RS02135 PF00672 HAMP domain HF888_RS02150 PF08240 Alcohol dehydrogenase GroES-like domain HF888_RS02150 PF00107 Zinc-binding dehydrogenase HF888_RS02175 PF00005 ABC transporter HF888_RS02185 PF01975 Survival protein SurE HF888_RS02200 PF04542 Sigma-70 region 2 HF888_RS02200 PF04546 Sigma-70, non-essential region HF888_RS02200 PF04539 Sigma-70 region 3 HF888_RS02200 PF04545 Sigma-70, region 4 HF888_RS02200 PF00140 Sigma-70 factor, region 1.2 HF888_RS02200 PF03979 Sigma-70 factor, region 1.1 HF888_RS02205 PF13662 Toprim domain HF888_RS02205 PF01807 CHC2 zinc finger HF888_RS02205 PF08278 DNA primase DnaG DnaB-binding HF888_RS02205 PF10410 DnaB-helicase binding domain of primase HF888_RS02205 PF08275 DNA primase catalytic core, N-terminal domain HF888_RS02210 PF09424 Yqey-like protein HF888_RS02215 PF01165 Ribosomal protein S21 HF888_RS02220 PF00814 Glycoprotease family HF888_RS02225 PF02152 Dihydroneopterin aldolase HF888_RS02230 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HF888_RS02240 PF12627 Probable RNA and SrmB- binding site of polymerase A HF888_RS02240 PF01743 Poly A polymerase head domain HF888_RS02240 PF01966 HD domain HF888_RS02265 PF04293 SpoVR like protein HF888_RS02270 PF04285 Protein of unknown function (DUF444) HF888_RS02275 PF06798 PrkA serine protein kinase C-terminal domain HF888_RS02275 PF08298 PrkA AAA domain HF888_RS02285 PF00149 Calcineurin-like phosphoesterase HF888_RS02290 PF04379 ApaG domain HF888_RS02295 PF00398 Ribosomal RNA adenine dimethylase HF888_RS02300 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HF888_RS02305 PF09312 SurA N-terminal domain HF888_RS02305 PF00639 PPIC-type PPIASE domain HF888_RS02310 PF04453 LPS transport system D HF888_RS02310 PF03968 OstA-like protein HF888_RS02315 PF01636 Phosphotransferase enzyme family HF888_RS02320 PF00483 Nucleotidyl transferase HF888_RS02325 PF00226 DnaJ domain HF888_RS02325 PF05099 Tellurite resistance protein TerB HF888_RS02330 PF01553 Acyltransferase HF888_RS02335 PF00834 Ribulose-phosphate 3 epimerase family HF888_RS02340 PF13419 Haloacid dehalogenase-like hydrolase HF888_RS02345 PF00140 Sigma-70 factor, region 1.2 HF888_RS02345 PF04545 Sigma-70, region 4 HF888_RS02345 PF03979 Sigma-70 factor, region 1.1 HF888_RS02345 PF04542 Sigma-70 region 2 HF888_RS02345 PF04539 Sigma-70 region 3 HF888_RS02350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS02350 PF12806 Acetyl-CoA dehydrogenase C-terminal like HF888_RS02350 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS02350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS02425 PF00563 EAL domain HF888_RS02425 PF01590 GAF domain HF888_RS02425 PF00360 Phytochrome region HF888_RS02425 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS02435 PF03466 LysR substrate binding domain HF888_RS02435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS02440 PF00999 Sodium/hydrogen exchanger family HF888_RS02440 PF02254 TrkA-N domain HF888_RS02445 PF00175 Oxidoreductase NAD-binding domain HF888_RS02445 PF00970 Oxidoreductase FAD-binding domain HF888_RS02455 PF00196 Bacterial regulatory proteins, luxR family HF888_RS02455 PF00563 EAL domain HF888_RS02460 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS02460 PF03707 Bacterial signalling protein N terminal repeat HF888_RS02460 PF00563 EAL domain HF888_RS02465 PF00107 Zinc-binding dehydrogenase HF888_RS02465 PF08240 Alcohol dehydrogenase GroES-like domain HF888_RS02470 PF01523 Putative modulator of DNA gyrase HF888_RS02480 PF03793 PASTA domain HF888_RS02480 PF00069 Protein kinase domain HF888_RS02485 PF02560 Cyanate lyase C-terminal domain HF888_RS02490 PF01226 Formate/nitrite transporter HF888_RS02495 PF01926 50S ribosome-binding GTPase HF888_RS02495 PF06071 Protein of unknown function (DUF933) HF888_RS02500 PF01195 Peptidyl-tRNA hydrolase HF888_RS02505 PF14693 Ribosomal protein TL5, C-terminal domain HF888_RS02505 PF01386 Ribosomal L25p family HF888_RS02510 PF14572 Phosphoribosyl synthetase-associated domain HF888_RS02510 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HF888_RS02520 PF00288 GHMP kinases N terminal domain HF888_RS02520 PF08544 GHMP kinases C terminal HF888_RS02525 PF03550 Outer membrane lipoprotein LolB HF888_RS02535 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HF888_RS02535 PF01488 Shikimate / quinate 5-dehydrogenase HF888_RS02535 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HF888_RS02540 PF03462 PCRF domain HF888_RS02540 PF00472 RF-1 domain HF888_RS02545 PF13847 Methyltransferase domain HF888_RS02545 PF17827 PrmC N-terminal domain HF888_RS02570 PF04715 Anthranilate synthase component I, N terminal region HF888_RS02570 PF00425 chorismate binding enzyme HF888_RS02580 PF00117 Glutamine amidotransferase class-I HF888_RS02585 PF00591 Glycosyl transferase family, a/b domain HF888_RS02585 PF02885 Glycosyl transferase family, helical bundle domain HF888_RS02590 PF00218 Indole-3-glycerol phosphate synthase HF888_RS02595 PF11849 Domain of unknown function (DUF3369) HF888_RS02600 PF00027 Cyclic nucleotide-binding domain HF888_RS02600 PF13545 Crp-like helix-turn-helix domain HF888_RS02605 PF02566 OsmC-like protein HF888_RS02610 PF03232 Ubiquinone biosynthesis protein COQ7 HF888_RS02615 PF00072 Response regulator receiver domain HF888_RS02615 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS02615 PF09308 LuxQ, periplasmic HF888_RS02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS02620 PF02844 Phosphoribosylglycinamide synthetase, N domain HF888_RS02620 PF02843 Phosphoribosylglycinamide synthetase, C domain HF888_RS02620 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HF888_RS02625 PF01808 AICARFT/IMPCHase bienzyme HF888_RS02625 PF02142 MGS-like domain HF888_RS02630 PF02954 Bacterial regulatory protein, Fis family HF888_RS02635 PF01207 Dihydrouridine synthase (Dus) HF888_RS02650 PF01220 Dehydroquinase class II HF888_RS02655 PF00072 Response regulator receiver domain HF888_RS02655 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS02685 PF01479 S4 domain HF888_RS02685 PF00849 RNA pseudouridylate synthase HF888_RS02695 PF07311 Dodecin HF888_RS02710 PF00654 Voltage gated chloride channel HF888_RS02720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS02720 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS02720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS02725 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HF888_RS02725 PF12833 Helix-turn-helix domain HF888_RS02730 PF02515 CoA-transferase family III HF888_RS02735 PF00570 HRDC domain HF888_RS02735 PF09382 RQC domain HF888_RS02735 PF16124 RecQ zinc-binding HF888_RS02735 PF00270 DEAD/DEAH box helicase HF888_RS02735 PF00271 Helicase conserved C-terminal domain HF888_RS02740 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HF888_RS02750 PF01569 PAP2 superfamily HF888_RS02765 PF00378 Enoyl-CoA hydratase/isomerase HF888_RS02765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HF888_RS02765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HF888_RS02770 PF02803 Thiolase, C-terminal domain HF888_RS02770 PF00108 Thiolase, N-terminal domain HF888_RS02775 PF00440 Bacterial regulatory proteins, tetR family HF888_RS02775 PF02909 Tetracyclin repressor-like, C-terminal domain HF888_RS02780 PF00378 Enoyl-CoA hydratase/isomerase HF888_RS02780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HF888_RS02780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HF888_RS02785 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS02785 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HF888_RS02790 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HF888_RS02790 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HF888_RS02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS02795 PF03466 LysR substrate binding domain HF888_RS02800 PF01066 CDP-alcohol phosphatidyltransferase HF888_RS02805 PF00174 Oxidoreductase molybdopterin binding domain HF888_RS02810 PF01794 Ferric reductase like transmembrane component HF888_RS02845 PF00682 HMGL-like HF888_RS02845 PF08502 LeuA allosteric (dimerisation) domain HF888_RS02865 PF00958 GMP synthase C terminal domain HF888_RS02865 PF00117 Glutamine amidotransferase class-I HF888_RS02865 PF02540 NAD synthase HF888_RS02870 PF00072 Response regulator receiver domain HF888_RS02885 PF03144 Elongation factor Tu domain 2 HF888_RS02885 PF16658 Class II release factor RF3, C-terminal domain HF888_RS02885 PF00009 Elongation factor Tu GTP binding domain HF888_RS02895 PF13098 Thioredoxin-like domain HF888_RS02895 PF10411 Disulfide bond isomerase protein N-terminus HF888_RS02900 PF03447 Homoserine dehydrogenase, NAD binding domain HF888_RS02900 PF00742 Homoserine dehydrogenase HF888_RS02900 PF01842 ACT domain HF888_RS02905 PF14821 Threonine synthase N terminus HF888_RS02905 PF00291 Pyridoxal-phosphate dependent enzyme HF888_RS02910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS02910 PF00672 HAMP domain HF888_RS02910 PF16750 Sensor domain of 2-component histidine kinase HF888_RS02910 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS02915 PF00072 Response regulator receiver domain HF888_RS02915 PF00486 Transcriptional regulatory protein, C terminal HF888_RS02925 PF01368 DHH family HF888_RS02925 PF02272 DHHA1 domain HF888_RS02925 PF17768 RecJ OB domain HF888_RS02930 PF00005 ABC transporter HF888_RS02935 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS02940 PF00005 ABC transporter HF888_RS02945 PF00719 Inorganic pyrophosphatase HF888_RS02950 PF04324 BFD-like [2Fe-2S] binding domain HF888_RS02950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HF888_RS02950 PF00384 Molybdopterin oxidoreductase HF888_RS02950 PF01568 Molydopterin dinucleotide binding domain HF888_RS02955 PF04324 BFD-like [2Fe-2S] binding domain HF888_RS02955 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HF888_RS02955 PF18267 Rubredoxin NAD+ reductase C-terminal domain HF888_RS02955 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HF888_RS02955 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS02960 PF13806 Rieske-like [2Fe-2S] domain HF888_RS02965 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HF888_RS02965 PF04324 BFD-like [2Fe-2S] binding domain HF888_RS02965 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HF888_RS02965 PF18267 Rubredoxin NAD+ reductase C-terminal domain HF888_RS02965 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS02980 PF07690 Major Facilitator Superfamily HF888_RS02985 PF03793 PASTA domain HF888_RS02985 PF00069 Protein kinase domain HF888_RS03005 PF01225 Mur ligase family, catalytic domain HF888_RS03005 PF08245 Mur ligase middle domain HF888_RS03005 PF02875 Mur ligase family, glutamate ligase domain HF888_RS03010 PF02441 Flavoprotein HF888_RS03030 PF02082 Transcriptional regulator HF888_RS03035 PF00266 Aminotransferase class-V HF888_RS03040 PF01458 Uncharacterized protein family (UPF0051) HF888_RS03045 PF00005 ABC transporter HF888_RS03050 PF01458 Uncharacterized protein family (UPF0051) HF888_RS03055 PF00266 Aminotransferase class-V HF888_RS03060 PF01521 Iron-sulphur cluster biosynthesis HF888_RS03065 PF01883 Iron-sulfur cluster assembly protein HF888_RS03070 PF13193 AMP-binding enzyme C-terminal domain HF888_RS03070 PF00501 AMP-binding enzyme HF888_RS03075 PF00291 Pyridoxal-phosphate dependent enzyme HF888_RS03080 PF02657 Fe-S metabolism associated domain HF888_RS03085 PF00334 Nucleoside diphosphate kinase HF888_RS03090 PF04055 Radical SAM superfamily HF888_RS03100 PF04551 GcpE protein HF888_RS03105 PF13393 Histidyl-tRNA synthetase HF888_RS03105 PF03129 Anticodon binding domain HF888_RS03110 PF09976 Tetratricopeptide repeat-like domain HF888_RS03115 PF13360 PQQ-like domain HF888_RS03120 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HF888_RS03120 PF01926 50S ribosome-binding GTPase HF888_RS03135 PF00360 Phytochrome region HF888_RS03135 PF08446 PAS fold HF888_RS03135 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS03135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS03135 PF01590 GAF domain HF888_RS03140 PF00072 Response regulator receiver domain HF888_RS03145 PF03707 Bacterial signalling protein N terminal repeat HF888_RS03145 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS03145 PF00563 EAL domain HF888_RS03155 PF02743 Cache domain HF888_RS03155 PF00672 HAMP domain HF888_RS03155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS03165 PF01713 Smr domain HF888_RS03170 PF01551 Peptidase family M23 HF888_RS03175 PF02601 Exonuclease VII, large subunit HF888_RS03175 PF13742 OB-fold nucleic acid binding domain HF888_RS03190 PF12146 Serine aminopeptidase, S33 HF888_RS03195 PF00571 CBS domain HF888_RS03195 PF00478 IMP dehydrogenase / GMP reductase domain HF888_RS03200 PF02540 NAD synthase HF888_RS03200 PF00958 GMP synthase C terminal domain HF888_RS03200 PF00117 Glutamine amidotransferase class-I HF888_RS03205 PF00561 alpha/beta hydrolase fold HF888_RS03210 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HF888_RS03215 PF00578 AhpC/TSA family HF888_RS03220 PF12706 Beta-lactamase superfamily domain HF888_RS03230 PF11953 Domain of unknown function (DUF3470) HF888_RS03230 PF00037 4Fe-4S binding domain HF888_RS03235 PF01624 MutS domain I HF888_RS03235 PF05192 MutS domain III HF888_RS03235 PF00488 MutS domain V HF888_RS03235 PF05190 MutS family domain IV HF888_RS03235 PF05188 MutS domain II HF888_RS03240 PF08274 PhnA Zinc-Ribbon HF888_RS03240 PF03831 PhnA domain HF888_RS03250 PF08212 Lipocalin-like domain HF888_RS03255 PF03707 Bacterial signalling protein N terminal repeat HF888_RS03255 PF00563 EAL domain HF888_RS03255 PF13188 PAS domain HF888_RS03255 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS03270 PF00005 ABC transporter HF888_RS03275 PF00141 Peroxidase HF888_RS03285 PF00009 Elongation factor Tu GTP binding domain HF888_RS03290 PF01507 Phosphoadenosine phosphosulfate reductase family HF888_RS03300 PF02129 X-Pro dipeptidyl-peptidase (S15 family) HF888_RS03305 PF03969 AFG1-like ATPase HF888_RS03310 PF09335 SNARE associated Golgi protein HF888_RS03325 PF00171 Aldehyde dehydrogenase family HF888_RS03330 PF01467 Cytidylyltransferase-like HF888_RS03340 PF02590 Predicted SPOUT methyltransferase HF888_RS03345 PF03717 Penicillin-binding Protein dimerisation domain HF888_RS03345 PF00905 Penicillin binding protein transpeptidase domain HF888_RS03350 PF01098 Cell cycle protein HF888_RS03355 PF13406 Transglycosylase SLT domain HF888_RS03360 PF05036 Sporulation related domain HF888_RS03360 PF03330 Lytic transglycolase HF888_RS03365 PF00768 D-alanyl-D-alanine carboxypeptidase HF888_RS03365 PF07943 Penicillin-binding protein 5, C-terminal domain HF888_RS03370 PF04359 Protein of unknown function (DUF493) HF888_RS03375 PF03099 Biotin/lipoate A/B protein ligase family HF888_RS03385 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HF888_RS03385 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HF888_RS03385 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HF888_RS03390 PF01061 ABC-2 type transporter HF888_RS03395 PF00005 ABC transporter HF888_RS03405 PF02563 Polysaccharide biosynthesis/export protein HF888_RS03405 PF10531 SLBB domain HF888_RS03415 PF02350 UDP-N-acetylglucosamine 2-epimerase HF888_RS03420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HF888_RS03420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HF888_RS03420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HF888_RS03450 PF00793 DAHP synthetase I family HF888_RS03455 PF05159 Capsule polysaccharide biosynthesis protein HF888_RS03460 PF05159 Capsule polysaccharide biosynthesis protein HF888_RS03470 PF01649 Ribosomal protein S20 HF888_RS03475 PF03023 Lipid II flippase MurJ HF888_RS03480 PF01687 Riboflavin kinase HF888_RS03480 PF06574 FAD synthetase HF888_RS03485 PF06827 Zinc finger found in FPG and IleRS HF888_RS03485 PF00133 tRNA synthetases class I (I, L, M and V) HF888_RS03485 PF08264 Anticodon-binding domain of tRNA HF888_RS03490 PF01252 Signal peptidase (SPase) II HF888_RS03495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HF888_RS03500 PF02401 LytB protein HF888_RS03505 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HF888_RS03505 PF03641 Possible lysine decarboxylase HF888_RS03505 PF11892 Domain of unknown function (DUF3412) HF888_RS03510 PF01743 Poly A polymerase head domain HF888_RS03510 PF00571 CBS domain HF888_RS03520 PF00551 Formyl transferase HF888_RS03520 PF01842 ACT domain HF888_RS03545 PF02810 SEC-C motif HF888_RS03555 PF02654 Cobalamin-5-phosphate synthase HF888_RS03575 PF02464 Competence-damaged protein HF888_RS03580 PF00154 recA bacterial DNA recombination protein HF888_RS03585 PF02631 RecX family HF888_RS03600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HF888_RS03600 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS03600 PF00403 Heavy-metal-associated domain HF888_RS03620 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HF888_RS03620 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HF888_RS03625 PF01758 Sodium Bile acid symporter family HF888_RS03630 PF01022 Bacterial regulatory protein, arsR family HF888_RS03635 PF08281 Sigma-70, region 4 HF888_RS03635 PF04542 Sigma-70 region 2 HF888_RS03660 PF00378 Enoyl-CoA hydratase/isomerase HF888_RS03660 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HF888_RS03660 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HF888_RS03665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS03665 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS03665 PF12806 Acetyl-CoA dehydrogenase C-terminal like HF888_RS03665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS03670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS03670 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS03670 PF12806 Acetyl-CoA dehydrogenase C-terminal like HF888_RS03670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS03680 PF03334 Na+/H+ antiporter subunit HF888_RS03685 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HF888_RS03695 PF00361 Proton-conducting membrane transporter HF888_RS03700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HF888_RS03705 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HF888_RS03705 PF00361 Proton-conducting membrane transporter HF888_RS03705 PF13244 Domain of unknown function (DUF4040) HF888_RS03705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HF888_RS03715 PF00860 Permease family HF888_RS03725 PF00593 TonB dependent receptor HF888_RS03725 PF07715 TonB-dependent Receptor Plug Domain HF888_RS03740 PF02525 Flavodoxin-like fold HF888_RS03745 PF06719 AraC-type transcriptional regulator N-terminus HF888_RS03745 PF12833 Helix-turn-helix domain HF888_RS03750 PF02637 GatB domain HF888_RS03750 PF02934 GatB/GatE catalytic domain HF888_RS03755 PF01425 Amidase HF888_RS03760 PF02686 Glu-tRNAGln amidotransferase C subunit HF888_RS03770 PF04085 rod shape-determining protein MreC HF888_RS03780 PF02545 Maf-like protein HF888_RS03785 PF10150 Ribonuclease E/G family HF888_RS03785 PF00575 S1 RNA binding domain HF888_RS03795 PF00795 Carbon-nitrogen hydrolase HF888_RS03800 PF04751 Protein of unknown function (DUF615) HF888_RS03805 PF03448 MgtE intracellular N domain HF888_RS03805 PF01769 Divalent cation transporter HF888_RS03805 PF00571 CBS domain HF888_RS03810 PF00381 PTS HPr component phosphorylation site HF888_RS03815 PF03668 P-loop ATPase protein family HF888_RS03820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HF888_RS03825 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HF888_RS03830 PF04552 Sigma-54, DNA binding domain HF888_RS03830 PF00309 Sigma-54 factor, Activator interacting domain (AID) HF888_RS03830 PF04963 Sigma-54 factor, core binding domain HF888_RS03835 PF12399 Branched-chain amino acid ATP-binding cassette transporter HF888_RS03835 PF00005 ABC transporter HF888_RS03840 PF03968 OstA-like protein HF888_RS03850 PF00571 CBS domain HF888_RS03850 PF01380 SIS domain HF888_RS03855 PF01699 Sodium/calcium exchanger protein HF888_RS03860 PF01722 BolA-like protein HF888_RS03865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HF888_RS03870 PF01634 ATP phosphoribosyltransferase HF888_RS03875 PF00815 Histidinol dehydrogenase HF888_RS03880 PF00155 Aminotransferase class I and II HF888_RS03885 PF13180 PDZ domain HF888_RS03890 PF01784 NIF3 (NGG1p interacting factor 3) HF888_RS03900 PF07715 TonB-dependent Receptor Plug Domain HF888_RS03900 PF00593 TonB dependent receptor HF888_RS03950 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS03995 PF00850 Histone deacetylase domain HF888_RS04015 PF07995 Glucose / Sorbosone dehydrogenase HF888_RS04020 PF02646 RmuC family HF888_RS04030 PF02391 MoaE protein HF888_RS04035 PF02597 ThiS family HF888_RS04040 PF01967 MoaC family HF888_RS04045 PF00994 Probable molybdopterin binding domain HF888_RS04050 PF00561 alpha/beta hydrolase fold HF888_RS04055 PF03280 Proteobacterial lipase chaperone protein HF888_RS04060 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS04060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS04060 PF07689 KaiB domain HF888_RS04065 PF00072 Response regulator receiver domain HF888_RS04065 PF00196 Bacterial regulatory proteins, luxR family HF888_RS04070 PF00994 Probable molybdopterin binding domain HF888_RS04070 PF03453 MoeA N-terminal region (domain I and II) HF888_RS04070 PF03454 MoeA C-terminal region (domain IV) HF888_RS04090 PF02743 Cache domain HF888_RS04090 PF00672 HAMP domain HF888_RS04090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS04095 PF00753 Metallo-beta-lactamase superfamily HF888_RS04105 PF00245 Alkaline phosphatase HF888_RS04110 PF07977 FabA-like domain HF888_RS04115 PF00271 Helicase conserved C-terminal domain HF888_RS04115 PF00270 DEAD/DEAH box helicase HF888_RS04120 PF07963 Prokaryotic N-terminal methylation motif HF888_RS04120 PF00114 Pilin (bacterial filament) HF888_RS04125 PF05567 Neisseria PilC beta-propeller domain HF888_RS04150 PF07963 Prokaryotic N-terminal methylation motif HF888_RS04150 PF00114 Pilin (bacterial filament) HF888_RS04155 PF07963 Prokaryotic N-terminal methylation motif HF888_RS04155 PF00114 Pilin (bacterial filament) HF888_RS04160 PF02954 Bacterial regulatory protein, Fis family HF888_RS04160 PF00072 Response regulator receiver domain HF888_RS04160 PF00158 Sigma-54 interaction domain HF888_RS04165 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HF888_RS04165 PF18381 YcaO cyclodehydratase C-terminal domain HF888_RS04170 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS04170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS04175 PF00795 Carbon-nitrogen hydrolase HF888_RS04175 PF02540 NAD synthase HF888_RS04180 PF00886 Ribosomal protein S16 HF888_RS04185 PF01782 RimM N-terminal domain HF888_RS04185 PF05239 PRC-barrel domain HF888_RS04190 PF01746 tRNA (Guanine-1)-methyltransferase HF888_RS04195 PF01245 Ribosomal protein L19 HF888_RS04200 PF00572 Ribosomal protein L13 HF888_RS04210 PF00355 Rieske [2Fe-2S] domain HF888_RS04210 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HF888_RS04215 PF00032 Cytochrome b(C-terminal)/b6/petD HF888_RS04215 PF00033 Cytochrome b/b6/petB HF888_RS04220 PF02167 Cytochrome C1 family HF888_RS04225 PF02798 Glutathione S-transferase, N-terminal domain HF888_RS04225 PF00043 Glutathione S-transferase, C-terminal domain HF888_RS04230 PF04386 Stringent starvation protein B HF888_RS04235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS04235 PF03466 LysR substrate binding domain HF888_RS04240 PF00107 Zinc-binding dehydrogenase HF888_RS04240 PF08240 Alcohol dehydrogenase GroES-like domain HF888_RS04245 PF00756 Putative esterase HF888_RS04255 PF07715 TonB-dependent Receptor Plug Domain HF888_RS04255 PF00593 TonB dependent receptor HF888_RS04260 PF13188 PAS domain HF888_RS04260 PF08448 PAS fold HF888_RS04260 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS04260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS04260 PF00072 Response regulator receiver domain HF888_RS04265 PF02558 Ketopantoate reductase PanE/ApbA HF888_RS04265 PF08546 Ketopantoate reductase PanE/ApbA C terminal HF888_RS04275 PF04461 Protein of unknown function (DUF520) HF888_RS04280 PF07690 Major Facilitator Superfamily HF888_RS04285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HF888_RS04290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS04290 PF00672 HAMP domain HF888_RS04305 PF04186 FxsA cytoplasmic membrane protein HF888_RS04310 PF00166 Chaperonin 10 Kd subunit HF888_RS04315 PF00118 TCP-1/cpn60 chaperonin family HF888_RS04325 PF11356 Type II secretion system protein C HF888_RS04330 PF00263 Bacterial type II and III secretion system protein HF888_RS04330 PF03958 Bacterial type II/III secretion system short domain HF888_RS04335 PF02545 Maf-like protein HF888_RS04375 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS04375 PF00989 PAS fold HF888_RS04375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS04385 PF01329 Pterin 4 alpha carbinolamine dehydratase HF888_RS04410 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS04415 PF00691 OmpA family HF888_RS04415 PF13677 Membrane MotB of proton-channel complex MotA/MotB HF888_RS04420 PF06418 CTP synthase N-terminus HF888_RS04420 PF00117 Glutamine amidotransferase class-I HF888_RS04425 PF03952 Enolase, N-terminal domain HF888_RS04425 PF00113 Enolase, C-terminal TIM barrel domain HF888_RS04430 PF04977 Septum formation initiator HF888_RS04440 PF02542 YgbB family HF888_RS04445 PF01142 tRNA pseudouridine synthase D (TruD) HF888_RS04450 PF01975 Survival protein SurE HF888_RS04465 PF01551 Peptidase family M23 HF888_RS04465 PF01476 LysM domain HF888_RS04470 PF04542 Sigma-70 region 2 HF888_RS04470 PF00140 Sigma-70 factor, region 1.2 HF888_RS04470 PF04545 Sigma-70, region 4 HF888_RS04470 PF04539 Sigma-70 region 3 HF888_RS04475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS04475 PF03466 LysR substrate binding domain HF888_RS04480 PF07690 Major Facilitator Superfamily HF888_RS04485 PF00248 Aldo/keto reductase family HF888_RS04490 PF00440 Bacterial regulatory proteins, tetR family HF888_RS04510 PF00313 'Cold-shock' DNA-binding domain HF888_RS04520 PF07152 YaeQ protein HF888_RS04545 PF01336 OB-fold nucleic acid binding domain HF888_RS04545 PF00152 tRNA synthetases class II (D, K and N) HF888_RS04555 PF03167 Uracil DNA glycosylase superfamily HF888_RS04580 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS04590 PF02472 Biopolymer transport protein ExbD/TolR HF888_RS04595 PF03544 Gram-negative bacterial TonB protein C-terminal HF888_RS04605 PF00005 ABC transporter HF888_RS04605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HF888_RS04610 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS04610 PF12911 N-terminal TM domain of oligopeptide transport permease C HF888_RS04615 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS04620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HF888_RS04650 PF03937 Flavinator of succinate dehydrogenase HF888_RS04660 PF05724 Thiopurine S-methyltransferase (TPMT) HF888_RS04665 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HF888_RS04665 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HF888_RS04665 PF00378 Enoyl-CoA hydratase/isomerase HF888_RS04670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS04670 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS04670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS04670 PF12806 Acetyl-CoA dehydrogenase C-terminal like HF888_RS04675 PF02311 AraC-like ligand binding domain HF888_RS04675 PF12833 Helix-turn-helix domain HF888_RS04685 PF00472 RF-1 domain HF888_RS04695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HF888_RS04700 PF00873 AcrB/AcrD/AcrF family HF888_RS04705 PF00202 Aminotransferase class-III HF888_RS04710 PF03458 UPF0126 domain HF888_RS04730 PF00296 Luciferase-like monooxygenase HF888_RS04735 PF02567 Phenazine biosynthesis-like protein HF888_RS04740 PF04303 PrpF protein HF888_RS04745 PF00330 Aconitase family (aconitate hydratase) HF888_RS04745 PF00694 Aconitase C-terminal domain HF888_RS04750 PF00285 Citrate synthase, C-terminal domain HF888_RS04760 PF07729 FCD domain HF888_RS04760 PF00392 Bacterial regulatory proteins, gntR family HF888_RS04770 PF01645 Conserved region in glutamate synthase HF888_RS04775 PF00005 ABC transporter HF888_RS04785 PF02230 Phospholipase/Carboxylesterase HF888_RS04795 PF00873 AcrB/AcrD/AcrF family HF888_RS04805 PF00106 short chain dehydrogenase HF888_RS04815 PF00764 Arginosuccinate synthase HF888_RS04830 PF05987 Bacterial protein of unknown function (DUF898) HF888_RS04840 PF02469 Fasciclin domain HF888_RS04845 PF07715 TonB-dependent Receptor Plug Domain HF888_RS04845 PF00593 TonB dependent receptor HF888_RS04850 PF02910 Fumarate reductase flavoprotein C-term HF888_RS04850 PF00890 FAD binding domain HF888_RS04855 PF08281 Sigma-70, region 4 HF888_RS04855 PF04542 Sigma-70 region 2 HF888_RS04860 PF03873 Anti sigma-E protein RseA, C-terminal domain HF888_RS04860 PF03872 Anti sigma-E protein RseA, N-terminal domain HF888_RS04865 PF17188 MucB/RseB C-terminal domain HF888_RS04865 PF03888 MucB/RseB N-terminal domain HF888_RS04875 PF13180 PDZ domain HF888_RS04880 PF03144 Elongation factor Tu domain 2 HF888_RS04880 PF00009 Elongation factor Tu GTP binding domain HF888_RS04880 PF00679 Elongation factor G C-terminus HF888_RS04880 PF06421 GTP-binding protein LepA C-terminus HF888_RS04890 PF00035 Double-stranded RNA binding motif HF888_RS04890 PF14622 Ribonuclease-III-like HF888_RS04895 PF01926 50S ribosome-binding GTPase HF888_RS04895 PF07650 KH domain HF888_RS04900 PF02565 Recombination protein O C terminal HF888_RS04900 PF11967 Recombination protein O N terminal HF888_RS04905 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HF888_RS04910 PF01648 4'-phosphopantetheinyl transferase superfamily HF888_RS04915 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS04915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS04915 PF00672 HAMP domain HF888_RS04915 PF01627 Hpt domain HF888_RS04915 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HF888_RS04915 PF00072 Response regulator receiver domain HF888_RS04920 PF00291 Pyridoxal-phosphate dependent enzyme HF888_RS04925 PF01938 TRAM domain HF888_RS04925 PF05958 tRNA (Uracil-5-)-methyltransferase HF888_RS04930 PF13291 ACT domain HF888_RS04930 PF04607 Region found in RelA / SpoT proteins HF888_RS04930 PF02824 TGS domain HF888_RS04935 PF03819 MazG nucleotide pyrophosphohydrolase domain HF888_RS04940 PF04445 Putative SAM-dependent methyltransferase HF888_RS04945 PF02673 Bacitracin resistance protein BacA HF888_RS04950 PF00814 Glycoprotease family HF888_RS04960 PF05191 Adenylate kinase, active site lid HF888_RS04965 PF00311 Phosphoenolpyruvate carboxylase HF888_RS04975 PF01553 Acyltransferase HF888_RS04980 PF00005 ABC transporter HF888_RS04995 PF04102 SlyX HF888_RS05000 PF00313 'Cold-shock' DNA-binding domain HF888_RS05015 PF13847 Methyltransferase domain HF888_RS05020 PF07687 Peptidase dimerisation domain HF888_RS05020 PF01546 Peptidase family M20/M25/M40 HF888_RS05025 PF00588 SpoU rRNA Methylase family HF888_RS05035 PF00440 Bacterial regulatory proteins, tetR family HF888_RS05050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS05050 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS05055 PF14602 Hexapeptide repeat of succinyl-transferase HF888_RS05055 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HF888_RS05060 PF03960 ArsC family HF888_RS05065 PF00155 Aminotransferase class I and II HF888_RS05070 PF01842 ACT domain HF888_RS05070 PF01966 HD domain HF888_RS05070 PF08335 GlnD PII-uridylyltransferase HF888_RS05070 PF01909 Nucleotidyltransferase domain HF888_RS05075 PF00557 Metallopeptidase family M24 HF888_RS05080 PF00318 Ribosomal protein S2 HF888_RS05085 PF00889 Elongation factor TS HF888_RS05090 PF00696 Amino acid kinase family HF888_RS05095 PF01765 Ribosome recycling factor HF888_RS05100 PF01255 Putative undecaprenyl diphosphate synthase HF888_RS05110 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HF888_RS05110 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HF888_RS05110 PF13288 DXP reductoisomerase C-terminal domain HF888_RS05115 PF13180 PDZ domain HF888_RS05115 PF17820 PDZ domain HF888_RS05115 PF02163 Peptidase family M50 HF888_RS05120 PF07244 Surface antigen variable number repeat HF888_RS05120 PF01103 Surface antigen HF888_RS05125 PF03938 Outer membrane protein (OmpH-like) HF888_RS05130 PF00132 Bacterial transferase hexapeptide (six repeats) HF888_RS05130 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HF888_RS05135 PF07977 FabA-like domain HF888_RS05140 PF00132 Bacterial transferase hexapeptide (six repeats) HF888_RS05140 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HF888_RS05145 PF02684 Lipid-A-disaccharide synthetase HF888_RS05165 PF01734 Patatin-like phospholipase HF888_RS05170 PF00677 Lumazine binding domain HF888_RS05185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HF888_RS05185 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HF888_RS05190 PF12833 Helix-turn-helix domain HF888_RS05190 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HF888_RS05210 PF04408 Helicase associated domain (HA2) HF888_RS05210 PF00271 Helicase conserved C-terminal domain HF888_RS05210 PF08482 ATP-dependent helicase C-terminal HF888_RS05210 PF00270 DEAD/DEAH box helicase HF888_RS05215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS05215 PF00672 HAMP domain HF888_RS05225 PF05958 tRNA (Uracil-5-)-methyltransferase HF888_RS05240 PF08448 PAS fold HF888_RS05240 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS05240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS05240 PF00072 Response regulator receiver domain HF888_RS05240 PF13426 PAS domain HF888_RS05250 PF04030 D-arabinono-1,4-lactone oxidase HF888_RS05250 PF01565 FAD binding domain HF888_RS05265 PF00873 AcrB/AcrD/AcrF family HF888_RS05275 PF03575 Peptidase family S51 HF888_RS05290 PF12833 Helix-turn-helix domain HF888_RS05290 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HF888_RS05300 PF01593 Flavin containing amine oxidoreductase HF888_RS05315 PF00089 Trypsin HF888_RS05320 PF04324 BFD-like [2Fe-2S] binding domain HF888_RS05330 PF07969 Amidohydrolase family HF888_RS05340 PF10415 Fumarase C C-terminus HF888_RS05340 PF00206 Lyase HF888_RS05345 PF00440 Bacterial regulatory proteins, tetR family HF888_RS05345 PF08362 YcdC-like protein, C-terminal region HF888_RS05355 PF03450 CO dehydrogenase flavoprotein C-terminal domain HF888_RS05355 PF00941 FAD binding domain in molybdopterin dehydrogenase HF888_RS05360 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HF888_RS05360 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HF888_RS05370 PF03561 Allantoicase repeat HF888_RS05380 PF00576 HIUase/Transthyretin family HF888_RS05385 PF04115 Ureidoglycolate lyase HF888_RS05390 PF01979 Amidohydrolase family HF888_RS05410 PF00005 ABC transporter HF888_RS05415 PF03379 CcmB protein HF888_RS05420 PF01578 Cytochrome C assembly protein HF888_RS05430 PF03100 CcmE HF888_RS05435 PF01578 Cytochrome C assembly protein HF888_RS05435 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HF888_RS05440 PF08534 Redoxin HF888_RS05445 PF03918 Cytochrome C biogenesis protein HF888_RS05460 PF06865 Pyrimidine/purine nucleoside phosphorylase HF888_RS05465 PF00580 UvrD/REP helicase N-terminal domain HF888_RS05465 PF13361 UvrD-like helicase C-terminal domain HF888_RS05475 PF00106 short chain dehydrogenase HF888_RS05480 PF01263 Aldose 1-epimerase HF888_RS05485 PF01026 TatD related DNase HF888_RS05490 PF01243 Pyridoxamine 5'-phosphate oxidase HF888_RS05490 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HF888_RS05505 PF00378 Enoyl-CoA hydratase/isomerase HF888_RS05510 PF00571 CBS domain HF888_RS05510 PF01595 Cyclin M transmembrane N-terminal domain HF888_RS05520 PF06508 Queuosine biosynthesis protein QueC HF888_RS05540 PF07715 TonB-dependent Receptor Plug Domain HF888_RS05550 PF03150 Di-haem cytochrome c peroxidase HF888_RS05565 PF02472 Biopolymer transport protein ExbD/TolR HF888_RS05570 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS05590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS05590 PF03466 LysR substrate binding domain HF888_RS05595 PF07681 DoxX HF888_RS05600 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HF888_RS05605 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HF888_RS05605 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HF888_RS05605 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HF888_RS05605 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HF888_RS05610 PF00483 Nucleotidyl transferase HF888_RS05615 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HF888_RS05615 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HF888_RS05635 PF00128 Alpha amylase, catalytic domain HF888_RS05645 PF01569 PAP2 superfamily HF888_RS05655 PF00145 C-5 cytosine-specific DNA methylase HF888_RS05655 PF18284 DNA methylase N-terminal domain HF888_RS05665 PF13614 AAA domain HF888_RS05705 PF02525 Flavodoxin-like fold HF888_RS05710 PF00753 Metallo-beta-lactamase superfamily HF888_RS05715 PF01596 O-methyltransferase HF888_RS05720 PF00440 Bacterial regulatory proteins, tetR family HF888_RS05730 PF00873 AcrB/AcrD/AcrF family HF888_RS05740 PF01292 Prokaryotic cytochrome b561 HF888_RS05745 PF02683 Cytochrome C biogenesis protein transmembrane region HF888_RS05745 PF11412 Disulphide bond corrector protein DsbC HF888_RS05750 PF00578 AhpC/TSA family HF888_RS05765 PF02424 ApbE family HF888_RS05770 PF00072 Response regulator receiver domain HF888_RS05770 PF00486 Transcriptional regulatory protein, C terminal HF888_RS05775 PF08521 Two-component sensor kinase N-terminal HF888_RS05775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS05775 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS05780 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HF888_RS05780 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HF888_RS05785 PF00676 Dehydrogenase E1 component HF888_RS05790 PF02780 Transketolase, C-terminal domain HF888_RS05790 PF02779 Transketolase, pyrimidine binding domain HF888_RS05795 PF00364 Biotin-requiring enzyme HF888_RS05795 PF02817 e3 binding domain HF888_RS05795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HF888_RS05805 PF00743 Flavin-binding monooxygenase-like HF888_RS05815 PF01964 Radical SAM ThiC family HF888_RS05815 PF13667 ThiC-associated domain HF888_RS05820 PF01266 FAD dependent oxidoreductase HF888_RS05830 PF05690 Thiazole biosynthesis protein ThiG HF888_RS05835 PF02581 Thiamine monophosphate synthase HF888_RS05855 PF03167 Uracil DNA glycosylase superfamily HF888_RS05865 PF01966 HD domain HF888_RS05870 PF00152 tRNA synthetases class II (D, K and N) HF888_RS05870 PF01336 OB-fold nucleic acid binding domain HF888_RS05870 PF02938 GAD domain HF888_RS05875 PF02075 Crossover junction endodeoxyribonuclease RuvC HF888_RS05880 PF01330 RuvA N terminal domain HF888_RS05880 PF07499 RuvA, C-terminal domain HF888_RS05885 PF17864 RuvB AAA lid domain HF888_RS05885 PF05491 RuvB C-terminal winged helix domain HF888_RS05885 PF05496 Holliday junction DNA helicase RuvB P-loop domain HF888_RS05890 PF03061 Thioesterase superfamily HF888_RS05895 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS05900 PF02472 Biopolymer transport protein ExbD/TolR HF888_RS05910 PF04052 TolB amino-terminal domain HF888_RS05910 PF07676 WD40-like Beta Propeller Repeat HF888_RS05915 PF00691 OmpA family HF888_RS05935 PF02445 Quinolinate synthetase A protein HF888_RS05940 PF01435 Peptidase family M48 HF888_RS05945 PF01206 Sulfurtransferase TusA HF888_RS05950 PF01594 AI-2E family transporter HF888_RS05955 PF00701 Dihydrodipicolinate synthetase family HF888_RS05965 PF00753 Metallo-beta-lactamase superfamily HF888_RS05980 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HF888_RS05980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HF888_RS05995 PF11871 Domain of unknown function (DUF3391) HF888_RS05995 PF01966 HD domain HF888_RS06000 PF01966 HD domain HF888_RS06005 PF10502 Signal peptidase, peptidase S26 HF888_RS06020 PF00672 HAMP domain HF888_RS06020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS06020 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HF888_RS06020 PF00072 Response regulator receiver domain HF888_RS06020 PF01627 Hpt domain HF888_RS06020 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS06025 PF00881 Nitroreductase family HF888_RS06035 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HF888_RS06035 PF01464 Transglycosylase SLT domain HF888_RS06065 PF00004 ATPase family associated with various cellular activities (AAA) HF888_RS06065 PF17862 AAA+ lid domain HF888_RS06065 PF01434 Peptidase family M41 HF888_RS06125 PF00501 AMP-binding enzyme HF888_RS06125 PF13193 AMP-binding enzyme C-terminal domain HF888_RS06130 PF00271 Helicase conserved C-terminal domain HF888_RS06130 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HF888_RS06130 PF11898 Domain of unknown function (DUF3418) HF888_RS06130 PF00270 DEAD/DEAH box helicase HF888_RS06130 PF04408 Helicase associated domain (HA2) HF888_RS06135 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HF888_RS06135 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HF888_RS06140 PF05114 Protein of unknown function (DUF692) HF888_RS06155 PF04333 MlaA lipoprotein HF888_RS06165 PF00072 Response regulator receiver domain HF888_RS06175 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HF888_RS06175 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HF888_RS06195 PF12146 Serine aminopeptidase, S33 HF888_RS06200 PF00561 alpha/beta hydrolase fold HF888_RS06200 PF00364 Biotin-requiring enzyme HF888_RS06205 PF00578 AhpC/TSA family HF888_RS06210 PF03061 Thioesterase superfamily HF888_RS06215 PF00849 RNA pseudouridylate synthase HF888_RS06230 PF04381 Putative exonuclease, RdgC HF888_RS06250 PF01513 ATP-NAD kinase HF888_RS06255 PF00149 Calcineurin-like phosphoesterase HF888_RS06260 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HF888_RS06260 PF01694 Rhomboid family HF888_RS06265 PF07023 Protein of unknown function (DUF1315) HF888_RS06275 PF01433 Peptidase family M1 domain HF888_RS06275 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HF888_RS06275 PF11940 Domain of unknown function (DUF3458) Ig-like fold HF888_RS06280 PF07044 Protein of unknown function (DUF1329) HF888_RS06285 PF14870 Photosynthesis system II assembly factor YCF48 HF888_RS06295 PF00849 RNA pseudouridylate synthase HF888_RS06300 PF00108 Thiolase, N-terminal domain HF888_RS06300 PF02803 Thiolase, C-terminal domain HF888_RS06310 PF01219 Prokaryotic diacylglycerol kinase HF888_RS06330 PF12833 Helix-turn-helix domain HF888_RS06330 PF00072 Response regulator receiver domain HF888_RS06335 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HF888_RS06335 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HF888_RS06340 PF01553 Acyltransferase HF888_RS06345 PF18030 RimK PreATP-grasp domain HF888_RS06345 PF08443 RimK-like ATP-grasp domain HF888_RS06360 PF18030 RimK PreATP-grasp domain HF888_RS06360 PF08443 RimK-like ATP-grasp domain HF888_RS06370 PF03466 LysR substrate binding domain HF888_RS06370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS06375 PF04219 Protein of unknown function, DUF HF888_RS06385 PF00672 HAMP domain HF888_RS06385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS06385 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS06385 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HF888_RS06385 PF00072 Response regulator receiver domain HF888_RS06385 PF01627 Hpt domain HF888_RS06390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HF888_RS06390 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS06400 PF01568 Molydopterin dinucleotide binding domain HF888_RS06400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HF888_RS06400 PF00384 Molybdopterin oxidoreductase HF888_RS06405 PF00106 short chain dehydrogenase HF888_RS06415 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS06415 PF03707 Bacterial signalling protein N terminal repeat HF888_RS06415 PF00563 EAL domain HF888_RS06425 PF12833 Helix-turn-helix domain HF888_RS06425 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HF888_RS06430 PF03358 NADPH-dependent FMN reductase HF888_RS06445 PF07694 5TMR of 5TMR-LYT HF888_RS06445 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS06450 PF00106 short chain dehydrogenase HF888_RS06455 PF13419 Haloacid dehalogenase-like hydrolase HF888_RS06465 PF01979 Amidohydrolase family HF888_RS06470 PF00521 DNA gyrase/topoisomerase IV, subunit A HF888_RS06470 PF03989 DNA gyrase C-terminal domain, beta-propeller HF888_RS06480 PF00266 Aminotransferase class-V HF888_RS06485 PF01842 ACT domain HF888_RS06485 PF01817 Chorismate mutase type II HF888_RS06485 PF00800 Prephenate dehydratase HF888_RS06490 PF00155 Aminotransferase class I and II HF888_RS06495 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HF888_RS06500 PF02224 Cytidylate kinase HF888_RS06505 PF00575 S1 RNA binding domain HF888_RS06510 PF05159 Capsule polysaccharide biosynthesis protein HF888_RS06520 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase HF888_RS06525 PF01467 Cytidylyltransferase-like HF888_RS06530 PF00216 Bacterial DNA-binding protein HF888_RS06535 PF00342 Phosphoglucose isomerase HF888_RS06540 PF00753 Metallo-beta-lactamase superfamily HF888_RS06540 PF10996 Beta-Casp domain HF888_RS06540 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HF888_RS06545 PF00483 Nucleotidyl transferase HF888_RS06550 PF16363 GDP-mannose 4,6 dehydratase HF888_RS06555 PF16363 GDP-mannose 4,6 dehydratase HF888_RS06560 PF00483 Nucleotidyl transferase HF888_RS06565 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HF888_RS06570 PF02222 ATP-grasp domain HF888_RS06590 PF00535 Glycosyl transferase family 2 HF888_RS06615 PF00535 Glycosyl transferase family 2 HF888_RS06620 PF02397 Bacterial sugar transferase HF888_RS06635 PF00155 Aminotransferase class I and II HF888_RS06640 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HF888_RS06640 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HF888_RS06645 PF00202 Aminotransferase class-III HF888_RS06650 PF00462 Glutaredoxin HF888_RS06655 PF12849 PBP superfamily domain HF888_RS06660 PF04304 Protein of unknown function (DUF454) HF888_RS06665 PF13466 STAS domain HF888_RS06670 PF00072 Response regulator receiver domain HF888_RS06670 PF00486 Transcriptional regulatory protein, C terminal HF888_RS06690 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) HF888_RS06695 PF01926 50S ribosome-binding GTPase HF888_RS06705 PF01722 BolA-like protein HF888_RS06715 PF01541 GIY-YIG catalytic domain HF888_RS06715 PF08459 UvrC Helix-hairpin-helix N-terminal HF888_RS06715 PF02151 UvrB/uvrC motif HF888_RS06720 PF00171 Aldehyde dehydrogenase family HF888_RS06720 PF01619 Proline dehydrogenase HF888_RS06720 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HF888_RS06720 PF14850 DNA-binding domain of Proline dehydrogenase HF888_RS06730 PF00211 Adenylate and Guanylate cyclase catalytic domain HF888_RS06730 PF00672 HAMP domain HF888_RS06740 PF00440 Bacterial regulatory proteins, tetR family HF888_RS06745 PF02311 AraC-like ligand binding domain HF888_RS06745 PF12833 Helix-turn-helix domain HF888_RS06750 PF00501 AMP-binding enzyme HF888_RS06755 PF00753 Metallo-beta-lactamase superfamily HF888_RS06765 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HF888_RS06765 PF12833 Helix-turn-helix domain HF888_RS06770 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HF888_RS06775 PF13205 Bacterial Ig-like domain HF888_RS06780 PF00004 ATPase family associated with various cellular activities (AAA) HF888_RS06780 PF01434 Peptidase family M41 HF888_RS06780 PF17862 AAA+ lid domain HF888_RS06790 PF00849 RNA pseudouridylate synthase HF888_RS06790 PF01479 S4 domain HF888_RS06795 PF01728 FtsJ-like methyltransferase HF888_RS06800 PF00588 SpoU rRNA Methylase family HF888_RS06800 PF08032 RNA 2'-O ribose methyltransferase substrate binding HF888_RS06835 PF00665 Integrase core domain HF888_RS06835 PF13333 Integrase core domain HF888_RS06835 PF13276 HTH-like domain HF888_RS06850 PF03922 OmpW family HF888_RS06855 PF00440 Bacterial regulatory proteins, tetR family HF888_RS06855 PF17932 Tetracyclin repressor-like, C-terminal domain HF888_RS06865 PF01039 Carboxyl transferase domain HF888_RS06870 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS06870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS06870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS06875 PF00378 Enoyl-CoA hydratase/isomerase HF888_RS06880 PF00364 Biotin-requiring enzyme HF888_RS06880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HF888_RS06880 PF02785 Biotin carboxylase C-terminal domain HF888_RS06880 PF00289 Biotin carboxylase, N-terminal domain HF888_RS06885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS06885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS06885 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS06895 PF01425 Amidase HF888_RS06900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HF888_RS06900 PF00289 Biotin carboxylase, N-terminal domain HF888_RS06900 PF02785 Biotin carboxylase C-terminal domain HF888_RS06915 PF00005 ABC transporter HF888_RS06920 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS06930 PF03466 LysR substrate binding domain HF888_RS06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS06940 PF01361 Tautomerase enzyme HF888_RS06945 PF02028 BCCT, betaine/carnitine/choline family transporter HF888_RS06950 PF00149 Calcineurin-like phosphoesterase HF888_RS06955 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HF888_RS06960 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HF888_RS06960 PF00749 tRNA synthetases class I (E and Q), catalytic domain HF888_RS06965 PF09190 DALR domain HF888_RS06965 PF01406 tRNA synthetases class I (C) catalytic domain HF888_RS06970 PF02254 TrkA-N domain HF888_RS06970 PF00999 Sodium/hydrogen exchanger family HF888_RS06980 PF07715 TonB-dependent Receptor Plug Domain HF888_RS06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS06995 PF09308 LuxQ, periplasmic HF888_RS06995 PF00072 Response regulator receiver domain HF888_RS06995 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS07000 PF00209 Sodium:neurotransmitter symporter family HF888_RS07015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS07015 PF00183 Hsp90 protein HF888_RS07035 PF00717 Peptidase S24-like HF888_RS07035 PF01726 LexA DNA binding domain HF888_RS07060 PF00440 Bacterial regulatory proteins, tetR family HF888_RS07065 PF01476 LysM domain HF888_RS07065 PF03734 L,D-transpeptidase catalytic domain HF888_RS07070 PF00933 Glycosyl hydrolase family 3 N terminal domain HF888_RS07075 PF00924 Mechanosensitive ion channel HF888_RS07080 PF01048 Phosphorylase superfamily HF888_RS07090 PF03461 TRCF domain HF888_RS07090 PF00271 Helicase conserved C-terminal domain HF888_RS07090 PF17757 UvrB interaction domain HF888_RS07090 PF00270 DEAD/DEAH box helicase HF888_RS07090 PF02559 CarD-like/TRCF domain HF888_RS07095 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HF888_RS07095 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HF888_RS07100 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HF888_RS07100 PF11973 NQRA C-terminal domain HF888_RS07105 PF03116 NQR2, RnfD, RnfE family HF888_RS07110 PF04205 FMN-binding domain HF888_RS07115 PF02508 Rnf-Nqr subunit, membrane protein HF888_RS07120 PF02508 Rnf-Nqr subunit, membrane protein HF888_RS07125 PF00970 Oxidoreductase FAD-binding domain HF888_RS07125 PF00175 Oxidoreductase NAD-binding domain HF888_RS07125 PF00111 2Fe-2S iron-sulfur cluster binding domain HF888_RS07145 PF00004 ATPase family associated with various cellular activities (AAA) HF888_RS07145 PF17871 AAA lid domain HF888_RS07145 PF10431 C-terminal, D2-small domain, of ClpB protein HF888_RS07145 PF07724 AAA domain (Cdc48 subfamily) HF888_RS07235 PF05638 Type VI secretion system effector, Hcp HF888_RS07305 PF01894 Uncharacterised protein family UPF0047 HF888_RS07315 PF09186 Domain of unknown function (DUF1949) HF888_RS07315 PF01205 Uncharacterized protein family UPF0029 HF888_RS07320 PF05175 Methyltransferase small domain HF888_RS07340 PF02424 ApbE family HF888_RS07350 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS07350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HF888_RS07365 PF02146 Sir2 family HF888_RS07370 PF03009 Glycerophosphoryl diester phosphodiesterase family HF888_RS07385 PF03883 Peroxide stress protein YaaA HF888_RS07400 PF00595 PDZ domain HF888_RS07400 PF03572 Peptidase family S41 HF888_RS07400 PF17804 Tail specific protease N-terminal domain HF888_RS07400 PF11818 C-terminal domain of tail specific protease (DUF3340) HF888_RS07410 PF00289 Biotin carboxylase, N-terminal domain HF888_RS07410 PF02785 Biotin carboxylase C-terminal domain HF888_RS07410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HF888_RS07430 PF12704 MacB-like periplasmic core domain HF888_RS07430 PF02687 FtsX-like permease family HF888_RS07435 PF00005 ABC transporter HF888_RS07445 PF13567 Domain of unknown function (DUF4131) HF888_RS07445 PF00753 Metallo-beta-lactamase superfamily HF888_RS07445 PF03772 Competence protein HF888_RS07450 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS07455 PF02472 Biopolymer transport protein ExbD/TolR HF888_RS07460 PF00005 ABC transporter HF888_RS07460 PF00664 ABC transporter transmembrane region HF888_RS07465 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HF888_RS07470 PF03966 Trm112p-like protein HF888_RS07475 PF01551 Peptidase family M23 HF888_RS07480 PF01451 Low molecular weight phosphotyrosine protein phosphatase HF888_RS07485 PF01565 FAD binding domain HF888_RS07485 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HF888_RS07490 PF00575 S1 RNA binding domain HF888_RS07490 PF12111 Polyribonucleotide phosphorylase C terminal HF888_RS07490 PF10150 Ribonuclease E/G family HF888_RS07495 PF00849 RNA pseudouridylate synthase HF888_RS07495 PF01479 S4 domain HF888_RS07500 PF13419 Haloacid dehalogenase-like hydrolase HF888_RS07505 PF06965 Na+/H+ antiporter 1 HF888_RS07505 PF01343 Peptidase family S49 HF888_RS07510 PF02620 Large ribosomal RNA subunit accumulation protein YceD HF888_RS07515 PF01783 Ribosomal L32p protein family HF888_RS07520 PF02504 Fatty acid synthesis protein HF888_RS07525 PF00698 Acyl transferase domain HF888_RS07535 PF00550 Phosphopantetheine attachment site HF888_RS07540 PF02801 Beta-ketoacyl synthase, C-terminal domain HF888_RS07540 PF00109 Beta-ketoacyl synthase, N-terminal domain HF888_RS07545 PF01063 Amino-transferase class IV HF888_RS07550 PF02618 YceG-like family HF888_RS07555 PF02223 Thymidylate kinase HF888_RS07560 PF09115 DNA polymerase III, delta subunit, C terminal HF888_RS07570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS07570 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS07570 PF09308 LuxQ, periplasmic HF888_RS07570 PF00072 Response regulator receiver domain HF888_RS07575 PF12833 Helix-turn-helix domain HF888_RS07580 PF02913 FAD linked oxidases, C-terminal domain HF888_RS07580 PF01565 FAD binding domain HF888_RS07585 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HF888_RS07585 PF01266 FAD dependent oxidoreductase HF888_RS07590 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HF888_RS07590 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HF888_RS07600 PF04116 Fatty acid hydroxylase superfamily HF888_RS07610 PF04011 LemA family HF888_RS07615 PF08668 HDOD domain HF888_RS07615 PF00563 EAL domain HF888_RS07620 PF01584 CheW-like domain HF888_RS07620 PF00072 Response regulator receiver domain HF888_RS07625 PF00111 2Fe-2S iron-sulfur cluster binding domain HF888_RS07625 PF03473 MOSC domain HF888_RS07625 PF03476 MOSC N-terminal beta barrel domain HF888_RS07635 PF01464 Transglycosylase SLT domain HF888_RS07635 PF14718 Soluble lytic murein transglycosylase L domain HF888_RS07655 PF00378 Enoyl-CoA hydratase/isomerase HF888_RS07655 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HF888_RS07655 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HF888_RS07660 PF00108 Thiolase, N-terminal domain HF888_RS07660 PF02803 Thiolase, C-terminal domain HF888_RS07675 PF01396 Topoisomerase DNA binding C4 zinc finger HF888_RS07675 PF01751 Toprim domain HF888_RS07675 PF01131 DNA topoisomerase HF888_RS07675 PF08272 Topoisomerase I zinc-ribbon-like HF888_RS07685 PF00850 Histone deacetylase domain HF888_RS07690 PF13380 CoA binding domain HF888_RS07690 PF13607 Succinyl-CoA ligase like flavodoxin domain HF888_RS07690 PF00583 Acetyltransferase (GNAT) family HF888_RS07695 PF00196 Bacterial regulatory proteins, luxR family HF888_RS07695 PF00072 Response regulator receiver domain HF888_RS07700 PF08459 UvrC Helix-hairpin-helix N-terminal HF888_RS07700 PF02151 UvrB/uvrC motif HF888_RS07700 PF01541 GIY-YIG catalytic domain HF888_RS07705 PF01066 CDP-alcohol phosphatidyltransferase HF888_RS07750 PF05840 Bacteriophage replication gene A protein (GPA) HF888_RS07820 PF13673 Acetyltransferase (GNAT) domain HF888_RS07825 PF08007 Cupin superfamily protein HF888_RS07830 PF08328 Adenylosuccinate lyase C-terminal HF888_RS07830 PF00206 Lyase HF888_RS07835 PF11893 Domain of unknown function (DUF3413) HF888_RS07835 PF00884 Sulfatase HF888_RS07840 PF04356 Protein of unknown function (DUF489) HF888_RS07855 PF00849 RNA pseudouridylate synthase HF888_RS07860 PF03971 Monomeric isocitrate dehydrogenase HF888_RS07865 PF00313 'Cold-shock' DNA-binding domain HF888_RS07870 PF02617 ATP-dependent Clp protease adaptor protein ClpS HF888_RS07875 PF00004 ATPase family associated with various cellular activities (AAA) HF888_RS07875 PF10431 C-terminal, D2-small domain, of ClpB protein HF888_RS07875 PF02861 Clp amino terminal domain, pathogenicity island component HF888_RS07875 PF17871 AAA lid domain HF888_RS07875 PF07724 AAA domain (Cdc48 subfamily) HF888_RS07880 PF01176 Translation initiation factor 1A / IF-1 HF888_RS07885 PF04377 Arginine-tRNA-protein transferase, C terminus HF888_RS07885 PF04376 Arginine-tRNA-protein transferase, N terminus HF888_RS07890 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HF888_RS07895 PF01580 FtsK/SpoIIIE family HF888_RS07895 PF17854 FtsK alpha domain HF888_RS07895 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HF888_RS07895 PF09397 Ftsk gamma domain HF888_RS07900 PF03548 Outer membrane lipoprotein carrier protein LolA HF888_RS07905 PF00004 ATPase family associated with various cellular activities (AAA) HF888_RS07905 PF16193 AAA C-terminal domain HF888_RS07905 PF12002 MgsA AAA+ ATPase C terminal HF888_RS07910 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HF888_RS07915 PF02403 Seryl-tRNA synthetase N-terminal domain HF888_RS07915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HF888_RS07920 PF10414 Sirohaem synthase dimerisation region HF888_RS07920 PF14824 Sirohaem biosynthesis protein central HF888_RS07920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HF888_RS07925 PF02743 Cache domain HF888_RS07925 PF00672 HAMP domain HF888_RS07925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS07935 PF05193 Peptidase M16 inactive domain HF888_RS07935 PF08367 Peptidase M16C associated HF888_RS07935 PF00675 Insulinase (Peptidase family M16) HF888_RS07945 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS07950 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS07955 PF02472 Biopolymer transport protein ExbD/TolR HF888_RS07960 PF03544 Gram-negative bacterial TonB protein C-terminal HF888_RS07970 PF03372 Endonuclease/Exonuclease/phosphatase family HF888_RS07980 PF02926 THUMP domain HF888_RS07980 PF02568 Thiamine biosynthesis protein (ThiI) HF888_RS07985 PF00589 Phage integrase family HF888_RS07985 PF02899 Phage integrase, N-terminal SAM-like domain HF888_RS07990 PF01979 Amidohydrolase family HF888_RS07995 PF00873 AcrB/AcrD/AcrF family HF888_RS08000 PF13533 Biotin-lipoyl like HF888_RS08005 PF05199 GMC oxidoreductase HF888_RS08005 PF00732 GMC oxidoreductase HF888_RS08020 PF07730 Histidine kinase HF888_RS08020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS08025 PF00196 Bacterial regulatory proteins, luxR family HF888_RS08025 PF00072 Response regulator receiver domain HF888_RS08035 PF07733 Bacterial DNA polymerase III alpha NTPase domain HF888_RS08035 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HF888_RS08035 PF14579 Helix-hairpin-helix motif HF888_RS08035 PF02811 PHP domain HF888_RS08035 PF01336 OB-fold nucleic acid binding domain HF888_RS08065 PF00873 AcrB/AcrD/AcrF family HF888_RS08080 PF01274 Malate synthase HF888_RS08085 PF06945 Protein of unknown function (DUF1289) HF888_RS08100 PF00923 Transaldolase/Fructose-6-phosphate aldolase HF888_RS08105 PF01207 Dihydrouridine synthase (Dus) HF888_RS08115 PF00437 Type II/IV secretion system protein HF888_RS08130 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS08130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HF888_RS08140 PF12693 GspL periplasmic domain HF888_RS08140 PF05134 Type II secretion system (T2SS), protein L HF888_RS08145 PF03934 Type II secretion system (T2SS), protein K HF888_RS08150 PF07963 Prokaryotic N-terminal methylation motif HF888_RS08150 PF11612 Type II secretion system (T2SS), protein J HF888_RS08155 PF02501 Type II secretion system (T2SS), protein I HF888_RS08155 PF07963 Prokaryotic N-terminal methylation motif HF888_RS08160 PF07963 Prokaryotic N-terminal methylation motif HF888_RS08160 PF12019 Type II transport protein GspH HF888_RS08165 PF07963 Prokaryotic N-terminal methylation motif HF888_RS08165 PF08334 Type II secretion system (T2SS), protein G HF888_RS08170 PF00482 Type II secretion system (T2SS), protein F HF888_RS08175 PF00437 Type II/IV secretion system protein HF888_RS08180 PF01012 Electron transfer flavoprotein domain HF888_RS08180 PF00766 Electron transfer flavoprotein FAD-binding domain HF888_RS08185 PF01012 Electron transfer flavoprotein domain HF888_RS08205 PF12137 RNA polymerase recycling family C-terminal HF888_RS08205 PF00271 Helicase conserved C-terminal domain HF888_RS08205 PF18337 RapA N-terminal Tudor like domain HF888_RS08205 PF00176 SNF2 family N-terminal domain HF888_RS08205 PF18339 RapA N-terminal Tudor like domain 1 HF888_RS08210 PF03737 Aldolase/RraA HF888_RS08220 PF00391 PEP-utilising enzyme, mobile domain HF888_RS08220 PF02896 PEP-utilising enzyme, TIM barrel domain HF888_RS08220 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HF888_RS08225 PF03618 Kinase/pyrophosphorylase HF888_RS08255 PF00425 chorismate binding enzyme HF888_RS08255 PF04715 Anthranilate synthase component I, N terminal region HF888_RS08265 PF01507 Phosphoadenosine phosphosulfate reductase family HF888_RS08270 PF03466 LysR substrate binding domain HF888_RS08270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS08285 PF00793 DAHP synthetase I family HF888_RS08290 PF00731 AIR carboxylase HF888_RS08295 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HF888_RS08295 PF02222 ATP-grasp domain HF888_RS08300 PF01521 Iron-sulphur cluster biosynthesis HF888_RS08300 PF01106 NifU-like domain HF888_RS08305 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HF888_RS08305 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HF888_RS08320 PF08240 Alcohol dehydrogenase GroES-like domain HF888_RS08320 PF00107 Zinc-binding dehydrogenase HF888_RS08325 PF01343 Peptidase family S49 HF888_RS08325 PF08496 Peptidase family S49 N-terminal HF888_RS08345 PF00929 Exonuclease HF888_RS08350 PF00075 RNase H HF888_RS08355 PF08241 Methyltransferase domain HF888_RS08360 PF01464 Transglycosylase SLT domain HF888_RS08360 PF01476 LysM domain HF888_RS08365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HF888_RS08375 PF13145 PPIC-type PPIASE domain HF888_RS08380 PF00216 Bacterial DNA-binding protein HF888_RS08385 PF02190 ATP-dependent protease La (LON) substrate-binding domain HF888_RS08385 PF05362 Lon protease (S16) C-terminal proteolytic domain HF888_RS08385 PF00004 ATPase family associated with various cellular activities (AAA) HF888_RS08390 PF07724 AAA domain (Cdc48 subfamily) HF888_RS08390 PF06689 ClpX C4-type zinc finger HF888_RS08390 PF10431 C-terminal, D2-small domain, of ClpB protein HF888_RS08395 PF00574 Clp protease HF888_RS08400 PF05697 Bacterial trigger factor protein (TF) HF888_RS08400 PF05698 Bacterial trigger factor protein (TF) C-terminus HF888_RS08400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HF888_RS08410 PF02348 Cytidylyltransferase HF888_RS08420 PF00749 tRNA synthetases class I (E and Q), catalytic domain HF888_RS08425 PF03707 Bacterial signalling protein N terminal repeat HF888_RS08425 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS08425 PF00563 EAL domain HF888_RS08445 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS08445 PF01590 GAF domain HF888_RS08445 PF00563 EAL domain HF888_RS08445 PF00360 Phytochrome region HF888_RS08455 PF02798 Glutathione S-transferase, N-terminal domain HF888_RS08455 PF00043 Glutathione S-transferase, C-terminal domain HF888_RS08460 PF06733 DEAD_2 HF888_RS08460 PF13307 Helicase C-terminal domain HF888_RS08470 PF01471 Putative peptidoglycan binding domain HF888_RS08470 PF13401 AAA domain HF888_RS08485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS08485 PF03466 LysR substrate binding domain HF888_RS08490 PF00463 Isocitrate lyase family HF888_RS08495 PF04371 Porphyromonas-type peptidyl-arginine deiminase HF888_RS08505 PF01027 Inhibitor of apoptosis-promoting Bax1 HF888_RS08510 PF02635 DsrE/DsrF-like family HF888_RS08515 PF02635 DsrE/DsrF-like family HF888_RS08520 PF04077 DsrH like protein HF888_RS08530 PF02885 Glycosyl transferase family, helical bundle domain HF888_RS08540 PF01206 Sulfurtransferase TusA HF888_RS08550 PF04073 Aminoacyl-tRNA editing domain HF888_RS08550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HF888_RS08550 PF03129 Anticodon binding domain HF888_RS08555 PF00497 Bacterial extracellular solute-binding proteins, family 3 HF888_RS08555 PF01464 Transglycosylase SLT domain HF888_RS08560 PF01152 Bacterial-like globin HF888_RS08570 PF03631 Virulence factor BrkB HF888_RS08575 PF03960 ArsC family HF888_RS08580 PF03358 NADPH-dependent FMN reductase HF888_RS08600 PF00308 Bacterial dnaA protein HF888_RS08605 PF01594 AI-2E family transporter HF888_RS08610 PF01066 CDP-alcohol phosphatidyltransferase HF888_RS08620 PF02769 AIR synthase related protein, C-terminal domain HF888_RS08620 PF00586 AIR synthase related protein, N-terminal domain HF888_RS08625 PF00551 Formyl transferase HF888_RS08670 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS08670 PF08448 PAS fold HF888_RS08680 PF01810 LysE type translocator HF888_RS08685 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HF888_RS08690 PF05127 Helicase HF888_RS08690 PF13718 GNAT acetyltransferase 2 HF888_RS08690 PF08351 Domain of unknown function (DUF1726) HF888_RS08690 PF17176 tRNA-binding domain HF888_RS08695 PF10609 NUBPL iron-transfer P-loop NTPase HF888_RS08705 PF01588 Putative tRNA binding domain HF888_RS08705 PF09334 tRNA synthetases class I (M) HF888_RS08715 PF02508 Rnf-Nqr subunit, membrane protein HF888_RS08720 PF04060 Putative Fe-S cluster HF888_RS08725 PF12838 4Fe-4S dicluster domain HF888_RS08725 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HF888_RS08725 PF10531 SLBB domain HF888_RS08725 PF13375 RnfC Barrel sandwich hybrid domain HF888_RS08730 PF03116 NQR2, RnfD, RnfE family HF888_RS08735 PF04205 FMN-binding domain HF888_RS08740 PF02508 Rnf-Nqr subunit, membrane protein HF888_RS08745 PF00730 HhH-GPD superfamily base excision DNA repair protein HF888_RS08745 PF10576 Iron-sulfur binding domain of endonuclease III HF888_RS08745 PF00633 Helix-hairpin-helix motif HF888_RS08750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HF888_RS08755 PF02649 Type I GTP cyclohydrolase folE2 HF888_RS08765 PF01502 Phosphoribosyl-AMP cyclohydrolase HF888_RS08790 PF02310 B12 binding domain HF888_RS08790 PF02607 B12 binding domain HF888_RS08790 PF02965 Vitamin B12 dependent methionine synthase, activation domain HF888_RS08790 PF00809 Pterin binding enzyme HF888_RS08790 PF02574 Homocysteine S-methyltransferase HF888_RS08795 PF02607 B12 binding domain HF888_RS08795 PF02574 Homocysteine S-methyltransferase HF888_RS08795 PF02965 Vitamin B12 dependent methionine synthase, activation domain HF888_RS08795 PF02310 B12 binding domain HF888_RS08795 PF00809 Pterin binding enzyme HF888_RS08800 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HF888_RS08800 PF12833 Helix-turn-helix domain HF888_RS08805 PF00743 Flavin-binding monooxygenase-like HF888_RS08820 PF00561 alpha/beta hydrolase fold HF888_RS08825 PF07516 SecA Wing and Scaffold domain HF888_RS08825 PF01043 SecA preprotein cross-linking domain HF888_RS08825 PF07517 SecA DEAD-like domain HF888_RS08825 PF02810 SEC-C motif HF888_RS08840 PF00881 Nitroreductase family HF888_RS08845 PF00211 Adenylate and Guanylate cyclase catalytic domain HF888_RS08855 PF01966 HD domain HF888_RS08860 PF13847 Methyltransferase domain HF888_RS08865 PF01841 Transglutaminase-like superfamily HF888_RS08865 PF11992 Domain of unknown function (DUF3488) HF888_RS08865 PF13559 Domain of unknown function (DUF4129) HF888_RS08875 PF07726 ATPase family associated with various cellular activities (AAA) HF888_RS08875 PF17863 AAA lid domain HF888_RS08880 PF01053 Cys/Met metabolism PLP-dependent enzyme HF888_RS08885 PF00156 Phosphoribosyl transferase domain HF888_RS08890 PF02674 Colicin V production protein HF888_RS08900 PF08245 Mur ligase middle domain HF888_RS08900 PF02875 Mur ligase family, glutamate ligase domain HF888_RS08905 PF00290 Tryptophan synthase alpha chain HF888_RS08910 PF00291 Pyridoxal-phosphate dependent enzyme HF888_RS08915 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HF888_RS08920 PF01416 tRNA pseudouridine synthase HF888_RS08930 PF00005 ABC transporter HF888_RS08930 PF12848 ABC transporter HF888_RS08935 PF12794 Mechanosensitive ion channel inner membrane domain 1 HF888_RS08935 PF00924 Mechanosensitive ion channel HF888_RS08935 PF12795 Mechanosensitive ion channel porin domain HF888_RS08940 PF02774 Semialdehyde dehydrogenase, dimerisation domain HF888_RS08940 PF01118 Semialdehyde dehydrogenase, NAD binding domain HF888_RS08945 PF00180 Isocitrate/isopropylmalate dehydrogenase HF888_RS08950 PF00694 Aconitase C-terminal domain HF888_RS08955 PF00330 Aconitase family (aconitate hydratase) HF888_RS08960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS08965 PF00582 Universal stress protein family HF888_RS08980 PF01037 Lrp/AsnC ligand binding domain HF888_RS08985 PF00682 HMGL-like HF888_RS08985 PF08502 LeuA allosteric (dimerisation) domain HF888_RS08990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS08990 PF00672 HAMP domain HF888_RS08990 PF02743 Cache domain HF888_RS09005 PF16363 GDP-mannose 4,6 dehydratase HF888_RS09010 PF01758 Sodium Bile acid symporter family HF888_RS09015 PF12833 Helix-turn-helix domain HF888_RS09015 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HF888_RS09020 PF02743 Cache domain HF888_RS09020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS09020 PF00672 HAMP domain HF888_RS09025 PF10431 C-terminal, D2-small domain, of ClpB protein HF888_RS09025 PF02861 Clp amino terminal domain, pathogenicity island component HF888_RS09025 PF00004 ATPase family associated with various cellular activities (AAA) HF888_RS09025 PF17871 AAA lid domain HF888_RS09025 PF07724 AAA domain (Cdc48 subfamily) HF888_RS09030 PF00892 EamA-like transporter family HF888_RS09040 PF03060 Nitronate monooxygenase HF888_RS09045 PF00005 ABC transporter HF888_RS09045 PF00571 CBS domain HF888_RS09050 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS09055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HF888_RS09060 PF00732 GMC oxidoreductase HF888_RS09060 PF05199 GMC oxidoreductase HF888_RS09065 PF00171 Aldehyde dehydrogenase family HF888_RS09070 PF00440 Bacterial regulatory proteins, tetR family HF888_RS09070 PF13977 BetI-type transcriptional repressor, C-terminal HF888_RS09075 PF00270 DEAD/DEAH box helicase HF888_RS09075 PF00271 Helicase conserved C-terminal domain HF888_RS09095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS09095 PF03466 LysR substrate binding domain HF888_RS09110 PF02566 OsmC-like protein HF888_RS09115 PF02694 Uncharacterised BCR, YnfA/UPF0060 family HF888_RS09170 PF02629 CoA binding domain HF888_RS09170 PF00549 CoA-ligase HF888_RS09175 PF08442 ATP-grasp domain HF888_RS09175 PF00549 CoA-ligase HF888_RS09180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HF888_RS09180 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS09185 PF00364 Biotin-requiring enzyme HF888_RS09185 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HF888_RS09185 PF02817 e3 binding domain HF888_RS09190 PF02779 Transketolase, pyrimidine binding domain HF888_RS09190 PF16870 2-oxoglutarate dehydrogenase C-terminal HF888_RS09190 PF00676 Dehydrogenase E1 component HF888_RS09190 PF16078 2-oxoglutarate dehydrogenase N-terminus HF888_RS09195 PF13085 2Fe-2S iron-sulfur cluster binding domain HF888_RS09200 PF02910 Fumarate reductase flavoprotein C-term HF888_RS09200 PF00890 FAD binding domain HF888_RS09205 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HF888_RS09210 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HF888_RS09215 PF00285 Citrate synthase, C-terminal domain HF888_RS09220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HF888_RS09220 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HF888_RS09245 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HF888_RS09245 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HF888_RS09250 PF02743 Cache domain HF888_RS09250 PF00672 HAMP domain HF888_RS09250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS09255 PF12832 MFS_1 like family HF888_RS09260 PF01264 Chorismate synthase HF888_RS09265 PF05175 Methyltransferase small domain HF888_RS09270 PF01734 Patatin-like phospholipase HF888_RS09310 PF13654 AAA domain HF888_RS09310 PF05362 Lon protease (S16) C-terminal proteolytic domain HF888_RS09315 PF09308 LuxQ, periplasmic HF888_RS09315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS09315 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS09315 PF00072 Response regulator receiver domain HF888_RS09320 PF00082 Subtilase family HF888_RS09345 PF14489 QueF-like protein HF888_RS09345 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HF888_RS09350 PF01061 ABC-2 type transporter HF888_RS09355 PF00005 ABC transporter HF888_RS09390 PF01047 MarR family HF888_RS09395 PF00255 Glutathione peroxidase HF888_RS09405 PF01641 SelR domain HF888_RS09410 PF00155 Aminotransferase class I and II HF888_RS09420 PF10672 S-adenosylmethionine-dependent methyltransferase HF888_RS09420 PF01170 Putative RNA methylase family UPF0020 HF888_RS09420 PF02926 THUMP domain HF888_RS09430 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HF888_RS09430 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HF888_RS09430 PF11890 Domain of unknown function (DUF3410) HF888_RS09435 PF00476 DNA polymerase family A HF888_RS09435 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HF888_RS09435 PF01367 5'-3' exonuclease, C-terminal SAM fold HF888_RS09445 PF00270 DEAD/DEAH box helicase HF888_RS09445 PF00271 Helicase conserved C-terminal domain HF888_RS09450 PF04315 Elongation factor P hydroxylase HF888_RS09455 PF01554 MatE HF888_RS09465 PF00912 Transglycosylase HF888_RS09490 PF14760 Rnk N-terminus HF888_RS09490 PF01272 Transcription elongation factor, GreA/GreB, C-term HF888_RS09510 PF03466 LysR substrate binding domain HF888_RS09510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS09520 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HF888_RS09520 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HF888_RS09525 PF00034 Cytochrome c HF888_RS09525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HF888_RS09525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HF888_RS09530 PF01799 [2Fe-2S] binding domain HF888_RS09530 PF00111 2Fe-2S iron-sulfur cluster binding domain HF888_RS09535 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HF888_RS09555 PF00665 Integrase core domain HF888_RS09555 PF13276 HTH-like domain HF888_RS09555 PF13333 Integrase core domain HF888_RS09615 PF14552 Tautomerase enzyme HF888_RS09625 PF02371 Transposase IS116/IS110/IS902 family HF888_RS09625 PF01548 Transposase HF888_RS09630 PF00589 Phage integrase family HF888_RS09630 PF13495 Phage integrase, N-terminal SAM-like domain HF888_RS09635 PF00248 Aldo/keto reductase family HF888_RS09655 PF18389 TrmO C-terminal domain HF888_RS09655 PF01980 tRNA-methyltransferase O HF888_RS09665 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS09665 PF00497 Bacterial extracellular solute-binding proteins, family 3 HF888_RS09665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS09680 PF12833 Helix-turn-helix domain HF888_RS09680 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HF888_RS09685 PF00550 Phosphopantetheine attachment site HF888_RS09690 PF07055 Enoyl reductase FAD binding domain HF888_RS09690 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HF888_RS09690 PF12241 Trans-2-enoyl-CoA reductase catalytic region HF888_RS09695 PF00109 Beta-ketoacyl synthase, N-terminal domain HF888_RS09695 PF02801 Beta-ketoacyl synthase, C-terminal domain HF888_RS09700 PF07977 FabA-like domain HF888_RS09705 PF18125 RlmM ferredoxin-like domain HF888_RS09705 PF01728 FtsJ-like methyltransferase HF888_RS09715 PF00115 Cytochrome C and Quinol oxidase polypeptide I HF888_RS09730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HF888_RS09730 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HF888_RS09735 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HF888_RS09735 PF13746 4Fe-4S dicluster domain HF888_RS09735 PF12801 4Fe-4S binding domain HF888_RS09745 PF00403 Heavy-metal-associated domain HF888_RS09760 PF00027 Cyclic nucleotide-binding domain HF888_RS09760 PF13545 Crp-like helix-turn-helix domain HF888_RS09770 PF01171 PP-loop family HF888_RS09780 PF01272 Transcription elongation factor, GreA/GreB, C-term HF888_RS09780 PF03449 Transcription elongation factor, N-terminal HF888_RS09790 PF00684 DnaJ central domain HF888_RS09790 PF01556 DnaJ C terminal domain HF888_RS09790 PF00226 DnaJ domain HF888_RS09825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS09825 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS09825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS09830 PF03466 LysR substrate binding domain HF888_RS09845 PF17763 Glutaminase/Asparaginase C-terminal domain HF888_RS09845 PF00710 Asparaginase, N-terminal HF888_RS09850 PF00111 2Fe-2S iron-sulfur cluster binding domain HF888_RS09850 PF01799 [2Fe-2S] binding domain HF888_RS09855 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HF888_RS09865 PF12804 MobA-like NTP transferase domain HF888_RS09865 PF00132 Bacterial transferase hexapeptide (six repeats) HF888_RS09870 PF04893 Yip1 domain HF888_RS09875 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HF888_RS09880 PF07694 5TMR of 5TMR-LYT HF888_RS09880 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS09890 PF00909 Ammonium Transporter Family HF888_RS09895 PF01170 Putative RNA methylase family UPF0020 HF888_RS09895 PF02926 THUMP domain HF888_RS09895 PF10672 S-adenosylmethionine-dependent methyltransferase HF888_RS09900 PF04957 Ribosome modulation factor HF888_RS09905 PF01180 Dihydroorotate dehydrogenase HF888_RS09915 PF05088 Bacterial NAD-glutamate dehydrogenase HF888_RS09920 PF17863 AAA lid domain HF888_RS09920 PF07726 ATPase family associated with various cellular activities (AAA) HF888_RS09925 PF01882 Protein of unknown function DUF58 HF888_RS09940 PF07584 Aerotolerance regulator N-terminal HF888_RS09940 PF00092 von Willebrand factor type A domain HF888_RS09955 PF00892 EamA-like transporter family HF888_RS09960 PF01642 Methylmalonyl-CoA mutase HF888_RS09960 PF02310 B12 binding domain HF888_RS09965 PF00313 'Cold-shock' DNA-binding domain HF888_RS09970 PF00883 Cytosol aminopeptidase family, catalytic domain HF888_RS09970 PF02789 Cytosol aminopeptidase family, N-terminal domain HF888_RS09980 PF08534 Redoxin HF888_RS09990 PF01022 Bacterial regulatory protein, arsR family HF888_RS09995 PF01740 STAS domain HF888_RS09995 PF00916 Sulfate permease family HF888_RS10000 PF10675 Protein of unknown function (DUF2489) HF888_RS10030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HF888_RS10030 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS10075 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HF888_RS10080 PF18073 Rubredoxin metal binding domain HF888_RS10090 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HF888_RS10090 PF01367 5'-3' exonuclease, C-terminal SAM fold HF888_RS10095 PF00005 ABC transporter HF888_RS10095 PF00664 ABC transporter transmembrane region HF888_RS10105 PF11798 IMS family HHH motif HF888_RS10105 PF11799 impB/mucB/samB family C-terminal domain HF888_RS10105 PF00817 impB/mucB/samB family HF888_RS10110 PF13488 Glycine zipper HF888_RS10110 PF00691 OmpA family HF888_RS10115 PF00929 Exonuclease HF888_RS10120 PF04143 Sulphur transport HF888_RS10130 PF10417 C-terminal domain of 1-Cys peroxiredoxin HF888_RS10130 PF00578 AhpC/TSA family HF888_RS10140 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HF888_RS10155 PF00216 Bacterial DNA-binding protein HF888_RS10160 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HF888_RS10160 PF03147 Ferredoxin-fold anticodon binding domain HF888_RS10160 PF01588 Putative tRNA binding domain HF888_RS10160 PF03483 B3/4 domain HF888_RS10160 PF03484 tRNA synthetase B5 domain HF888_RS10165 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HF888_RS10165 PF01409 tRNA synthetases class II core domain (F) HF888_RS10170 PF00453 Ribosomal protein L20 HF888_RS10175 PF01632 Ribosomal protein L35 HF888_RS10180 PF00707 Translation initiation factor IF-3, C-terminal domain HF888_RS10180 PF05198 Translation initiation factor IF-3, N-terminal domain HF888_RS10185 PF03129 Anticodon binding domain HF888_RS10185 PF02824 TGS domain HF888_RS10185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HF888_RS10185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HF888_RS10215 PF13332 Hemagglutinin repeat HF888_RS10215 PF13018 Extended Signal Peptide of Type V secretion system HF888_RS10215 PF04829 Pre-toxin domain with VENN motif HF888_RS10215 PF13018 Extended Signal Peptide of Type V secretion system HF888_RS10215 PF13332 Hemagglutinin repeat HF888_RS10215 PF05860 haemagglutination activity domain HF888_RS10215 PF05860 haemagglutination activity domain HF888_RS10215 PF04829 Pre-toxin domain with VENN motif HF888_RS10220 PF08479 POTRA domain, ShlB-type HF888_RS10220 PF17287 POTRA domain HF888_RS10220 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HF888_RS10235 PF17757 UvrB interaction domain HF888_RS10235 PF04851 Type III restriction enzyme, res subunit HF888_RS10235 PF00271 Helicase conserved C-terminal domain HF888_RS10235 PF12344 Ultra-violet resistance protein B HF888_RS10235 PF02151 UvrB/uvrC motif HF888_RS10245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS10245 PF03466 LysR substrate binding domain HF888_RS10250 PF16884 N-terminal domain of oxidoreductase HF888_RS10250 PF00107 Zinc-binding dehydrogenase HF888_RS10255 PF00202 Aminotransferase class-III HF888_RS10260 PF05971 RNA methyltransferase HF888_RS10265 PF06434 Aconitate hydratase 2 N-terminus HF888_RS10265 PF00330 Aconitase family (aconitate hydratase) HF888_RS10265 PF11791 Aconitate B N-terminal domain HF888_RS10280 PF01699 Sodium/calcium exchanger protein HF888_RS10285 PF00107 Zinc-binding dehydrogenase HF888_RS10285 PF08240 Alcohol dehydrogenase GroES-like domain HF888_RS10290 PF00664 ABC transporter transmembrane region HF888_RS10290 PF00005 ABC transporter HF888_RS10295 PF00893 Small Multidrug Resistance protein HF888_RS10300 PF00210 Ferritin-like domain HF888_RS10305 PF00664 ABC transporter transmembrane region HF888_RS10305 PF00005 ABC transporter HF888_RS10310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS10310 PF03466 LysR substrate binding domain HF888_RS10315 PF00672 HAMP domain HF888_RS10315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS10315 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS10320 PF00486 Transcriptional regulatory protein, C terminal HF888_RS10320 PF00072 Response regulator receiver domain HF888_RS10325 PF03477 ATP cone domain HF888_RS10325 PF02867 Ribonucleotide reductase, barrel domain HF888_RS10325 PF00317 Ribonucleotide reductase, all-alpha domain HF888_RS10330 PF00268 Ribonucleotide reductase, small chain HF888_RS10335 PF00111 2Fe-2S iron-sulfur cluster binding domain HF888_RS10340 PF00578 AhpC/TSA family HF888_RS10350 PF06100 MCRA family HF888_RS10360 PF02690 Na+/Pi-cotransporter HF888_RS10370 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS10370 PF00072 Response regulator receiver domain HF888_RS10375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HF888_RS10375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HF888_RS10380 PF08447 PAS fold HF888_RS10380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS10390 PF02347 Glycine cleavage system P-protein HF888_RS10400 PF05726 Pirin C-terminal cupin domain HF888_RS10400 PF02678 Pirin HF888_RS10410 PF00491 Arginase family HF888_RS10415 PF03466 LysR substrate binding domain HF888_RS10415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS10425 PF02954 Bacterial regulatory protein, Fis family HF888_RS10425 PF00158 Sigma-54 interaction domain HF888_RS10425 PF01590 GAF domain HF888_RS10430 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HF888_RS10430 PF13746 4Fe-4S dicluster domain HF888_RS10430 PF12801 4Fe-4S binding domain HF888_RS10440 PF00550 Phosphopantetheine attachment site HF888_RS10440 PF14765 Polyketide synthase dehydratase HF888_RS10440 PF02801 Beta-ketoacyl synthase, C-terminal domain HF888_RS10440 PF00109 Beta-ketoacyl synthase, N-terminal domain HF888_RS10440 PF08990 Erythronolide synthase docking HF888_RS10440 PF08240 Alcohol dehydrogenase GroES-like domain HF888_RS10440 PF00698 Acyl transferase domain HF888_RS10440 PF08659 KR domain HF888_RS10440 PF16197 Ketoacyl-synthetase C-terminal extension HF888_RS10445 PF01553 Acyltransferase HF888_RS10450 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS10455 PF00474 Sodium:solute symporter family HF888_RS10460 PF14850 DNA-binding domain of Proline dehydrogenase HF888_RS10460 PF00171 Aldehyde dehydrogenase family HF888_RS10460 PF01619 Proline dehydrogenase HF888_RS10460 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HF888_RS10475 PF01266 FAD dependent oxidoreductase HF888_RS10485 PF00171 Aldehyde dehydrogenase family HF888_RS10490 PF00202 Aminotransferase class-III HF888_RS10495 PF00171 Aldehyde dehydrogenase family HF888_RS10505 PF01266 FAD dependent oxidoreductase HF888_RS10520 PF12833 Helix-turn-helix domain HF888_RS10545 PF03466 LysR substrate binding domain HF888_RS10545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS10575 PF06803 Protein of unknown function (DUF1232) HF888_RS10660 PF13276 HTH-like domain HF888_RS10660 PF00665 Integrase core domain HF888_RS10660 PF13333 Integrase core domain HF888_RS10680 PF14552 Tautomerase enzyme HF888_RS10710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS10710 PF03466 LysR substrate binding domain HF888_RS10715 PF00920 Dehydratase family HF888_RS10720 PF01081 KDPG and KHG aldolase HF888_RS10725 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HF888_RS10730 PF00120 Glutamine synthetase, catalytic domain HF888_RS10735 PF00171 Aldehyde dehydrogenase family HF888_RS10740 PF00120 Glutamine synthetase, catalytic domain HF888_RS10745 PF13416 Bacterial extracellular solute-binding protein HF888_RS10750 PF00005 ABC transporter HF888_RS10750 PF08402 TOBE domain HF888_RS10755 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS10760 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS10770 PF13532 2OG-Fe(II) oxygenase superfamily HF888_RS10800 PF01479 S4 domain HF888_RS10800 PF00849 RNA pseudouridylate synthase HF888_RS10805 PF04079 Segregation and condensation complex subunit ScpB HF888_RS10810 PF02616 Segregation and condensation protein ScpA HF888_RS10815 PF00579 tRNA synthetases class I (W and Y) HF888_RS10820 PF01300 Telomere recombination HF888_RS10825 PF02811 PHP domain HF888_RS10835 PF03795 YCII-related domain HF888_RS10840 PF08239 Bacterial SH3 domain HF888_RS10845 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HF888_RS10855 PF01266 FAD dependent oxidoreductase HF888_RS10855 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HF888_RS10875 PF06794 Uncharacterised protein family (UPF0270) HF888_RS10890 PF00533 BRCA1 C Terminus (BRCT) domain HF888_RS10890 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HF888_RS10890 PF01653 NAD-dependent DNA ligase adenylation domain HF888_RS10890 PF12826 Helix-hairpin-helix motif HF888_RS10890 PF03120 NAD-dependent DNA ligase OB-fold domain HF888_RS10895 PF04354 ZipA, C-terminal FtsZ-binding domain HF888_RS10900 PF02463 RecF/RecN/SMC N terminal domain HF888_RS10905 PF00392 Bacterial regulatory proteins, gntR family HF888_RS10910 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HF888_RS10930 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system HF888_RS10940 PF00011 Hsp20/alpha crystallin family HF888_RS10945 PF16177 Acetyl-coenzyme A synthetase N-terminus HF888_RS10945 PF13193 AMP-binding enzyme C-terminal domain HF888_RS10945 PF00501 AMP-binding enzyme HF888_RS10955 PF00873 AcrB/AcrD/AcrF family HF888_RS10960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HF888_RS10985 PF09285 Elongation factor P, C-terminal HF888_RS10985 PF08207 Elongation factor P (EF-P) KOW-like domain HF888_RS10985 PF01132 Elongation factor P (EF-P) OB domain HF888_RS11000 PF00465 Iron-containing alcohol dehydrogenase HF888_RS11000 PF00171 Aldehyde dehydrogenase family HF888_RS11015 PF02308 MgtC family HF888_RS11020 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HF888_RS11025 PF06463 Molybdenum Cofactor Synthesis C HF888_RS11025 PF04055 Radical SAM superfamily HF888_RS11040 PF13847 Methyltransferase domain HF888_RS11045 PF08003 Protein of unknown function (DUF1698) HF888_RS11050 PF13649 Methyltransferase domain HF888_RS11055 PF08485 Polysaccharide biosynthesis protein C-terminal HF888_RS11055 PF02719 Polysaccharide biosynthesis protein HF888_RS11070 PF00849 RNA pseudouridylate synthase HF888_RS11075 PF00501 AMP-binding enzyme HF888_RS11075 PF13193 AMP-binding enzyme C-terminal domain HF888_RS11085 PF13411 MerR HTH family regulatory protein HF888_RS11090 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS11090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS11090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS11095 PF01039 Carboxyl transferase domain HF888_RS11100 PF00378 Enoyl-CoA hydratase/isomerase HF888_RS11105 PF18140 Propionyl-coenzyme A carboxylase BT domain HF888_RS11105 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HF888_RS11105 PF00364 Biotin-requiring enzyme HF888_RS11105 PF00289 Biotin carboxylase, N-terminal domain HF888_RS11105 PF02785 Biotin carboxylase C-terminal domain HF888_RS11110 PF00682 HMGL-like HF888_RS11140 PF00708 Acylphosphatase HF888_RS11145 PF13416 Bacterial extracellular solute-binding protein HF888_RS11150 PF06969 HemN C-terminal domain HF888_RS11150 PF04055 Radical SAM superfamily HF888_RS11165 PF00970 Oxidoreductase FAD-binding domain HF888_RS11165 PF00175 Oxidoreductase NAD-binding domain HF888_RS11165 PF00111 2Fe-2S iron-sulfur cluster binding domain HF888_RS11170 PF00487 Fatty acid desaturase HF888_RS11175 PF00962 Adenosine/AMP deaminase HF888_RS11195 PF00474 Sodium:solute symporter family HF888_RS11210 PF03692 Putative zinc- or iron-chelating domain HF888_RS11215 PF05166 YcgL domain HF888_RS11220 PF01612 3'-5' exonuclease HF888_RS11220 PF00570 HRDC domain HF888_RS11225 PF13662 Toprim domain HF888_RS11225 PF02132 RecR protein HF888_RS11230 PF02575 YbaB/EbfC DNA-binding family HF888_RS11235 PF12170 DNA polymerase III tau subunit V interacting with alpha HF888_RS11235 PF12169 DNA polymerase III subunits gamma and tau domain III HF888_RS11235 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HF888_RS11245 PF00753 Metallo-beta-lactamase superfamily HF888_RS11245 PF16123 Hydroxyacylglutathione hydrolase C-terminus HF888_RS11250 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HF888_RS11255 PF00563 EAL domain HF888_RS11255 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS11255 PF03707 Bacterial signalling protein N terminal repeat HF888_RS11280 PF01553 Acyltransferase HF888_RS11295 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS11295 PF00072 Response regulator receiver domain HF888_RS11300 PF01253 Translation initiation factor SUI1 HF888_RS11310 PF00871 Acetokinase family HF888_RS11315 PF07085 DRTGG domain HF888_RS11315 PF01515 Phosphate acetyl/butaryl transferase HF888_RS11320 PF01553 Acyltransferase HF888_RS11330 PF16916 Dimerisation domain of Zinc Transporter HF888_RS11330 PF01545 Cation efflux family HF888_RS11335 PF00072 Response regulator receiver domain HF888_RS11360 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS11360 PF00072 Response regulator receiver domain HF888_RS11370 PF00675 Insulinase (Peptidase family M16) HF888_RS11370 PF05193 Peptidase M16 inactive domain HF888_RS11370 PF16187 Middle or third domain of peptidase_M16 HF888_RS11385 PF07237 Protein of unknown function (DUF1428) HF888_RS11400 PF09423 PhoD-like phosphatase HF888_RS11400 PF16655 PhoD-like phosphatase, N-terminal domain HF888_RS11415 PF05853 beta-keto acid cleavage enzyme HF888_RS11420 PF13193 AMP-binding enzyme C-terminal domain HF888_RS11420 PF00501 AMP-binding enzyme HF888_RS11440 PF13192 Thioredoxin domain HF888_RS11440 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS11445 PF00578 AhpC/TSA family HF888_RS11445 PF10417 C-terminal domain of 1-Cys peroxiredoxin HF888_RS11460 PF00478 IMP dehydrogenase / GMP reductase domain HF888_RS11460 PF00571 CBS domain HF888_RS11465 PF11842 Domain of unknown function (DUF3362) HF888_RS11465 PF04055 Radical SAM superfamily HF888_RS11465 PF08497 Radical SAM N-terminal HF888_RS11495 PF13472 GDSL-like Lipase/Acylhydrolase family HF888_RS11500 PF00929 Exonuclease HF888_RS11500 PF08411 Exonuclease C-terminal HF888_RS11505 PF12697 Alpha/beta hydrolase family HF888_RS11545 PF12804 MobA-like NTP transferase domain HF888_RS11550 PF03006 Haemolysin-III related HF888_RS11560 PF00484 Carbonic anhydrase HF888_RS11565 PF00899 ThiF family HF888_RS11575 PF17876 Cold shock domain HF888_RS11575 PF08461 Ribonuclease R winged-helix domain HF888_RS11575 PF08206 Ribonuclease B OB domain HF888_RS11575 PF00773 RNB domain HF888_RS11575 PF00575 S1 RNA binding domain HF888_RS11585 PF00899 ThiF family HF888_RS11590 PF12833 Helix-turn-helix domain HF888_RS11590 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HF888_RS11605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS11605 PF03466 LysR substrate binding domain HF888_RS11620 PF01464 Transglycosylase SLT domain HF888_RS11620 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HF888_RS11625 PF07044 Protein of unknown function (DUF1329) HF888_RS11630 PF01026 TatD related DNase HF888_RS11640 PF05175 Methyltransferase small domain HF888_RS11650 PF07308 Protein of unknown function (DUF1456) HF888_RS11660 PF01625 Peptide methionine sulfoxide reductase HF888_RS11665 PF13538 UvrD-like helicase C-terminal domain HF888_RS11670 PF12705 PD-(D/E)XK nuclease superfamily HF888_RS11670 PF00580 UvrD/REP helicase N-terminal domain HF888_RS11670 PF13361 UvrD-like helicase C-terminal domain HF888_RS11675 PF17946 RecC C-terminal domain HF888_RS11690 PF01323 DSBA-like thioredoxin domain HF888_RS11705 PF08669 Glycine cleavage T-protein C-terminal barrel domain HF888_RS11705 PF01571 Aminomethyltransferase folate-binding domain HF888_RS11710 PF01597 Glycine cleavage H-protein HF888_RS11715 PF01627 Hpt domain HF888_RS11715 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS11715 PF00672 HAMP domain HF888_RS11715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS11715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HF888_RS11715 PF00072 Response regulator receiver domain HF888_RS11720 PF02347 Glycine cleavage system P-protein HF888_RS11730 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HF888_RS11745 PF03466 LysR substrate binding domain HF888_RS11745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS11755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HF888_RS11760 PF03193 RsgA GTPase HF888_RS11765 PF01027 Inhibitor of apoptosis-promoting Bax1 HF888_RS11775 PF03466 LysR substrate binding domain HF888_RS11775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS11800 PF01584 CheW-like domain HF888_RS11815 PF13614 AAA domain HF888_RS11820 PF00691 OmpA family HF888_RS11820 PF13677 Membrane MotB of proton-channel complex MotA/MotB HF888_RS11825 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS11830 PF00072 Response regulator receiver domain HF888_RS11830 PF01339 CheB methylesterase HF888_RS11835 PF01584 CheW-like domain HF888_RS11835 PF02895 Signal transducing histidine kinase, homodimeric domain HF888_RS11835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS11835 PF00072 Response regulator receiver domain HF888_RS11835 PF01627 Hpt domain HF888_RS11840 PF04344 Chemotaxis phosphatase, CheZ HF888_RS11845 PF00072 Response regulator receiver domain HF888_RS11850 PF04545 Sigma-70, region 4 HF888_RS11850 PF04539 Sigma-70 region 3 HF888_RS11850 PF04542 Sigma-70 region 2 HF888_RS11855 PF10609 NUBPL iron-transfer P-loop NTPase HF888_RS11860 PF00448 SRP54-type protein, GTPase domain HF888_RS11865 PF00771 FHIPEP family HF888_RS11875 PF01312 FlhB HrpN YscU SpaS Family HF888_RS11880 PF01311 Bacterial export proteins, family 1 HF888_RS11885 PF01313 Bacterial export proteins, family 3 HF888_RS11890 PF00813 FliP family HF888_RS11895 PF04347 Flagellar biosynthesis protein, FliO HF888_RS11900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HF888_RS11905 PF02154 Flagellar motor switch protein FliM HF888_RS11905 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HF888_RS11925 PF00072 Response regulator receiver domain HF888_RS11930 PF13466 STAS domain HF888_RS11935 PF01339 CheB methylesterase HF888_RS11935 PF00072 Response regulator receiver domain HF888_RS11940 PF03975 CheD chemotactic sensory transduction HF888_RS11945 PF01739 CheR methyltransferase, SAM binding domain HF888_RS11945 PF03705 CheR methyltransferase, all-alpha domain HF888_RS11950 PF02203 Tar ligand binding domain homologue HF888_RS11950 PF00672 HAMP domain HF888_RS11950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS11955 PF01584 CheW-like domain HF888_RS11960 PF01584 CheW-like domain HF888_RS11960 PF02895 Signal transducing histidine kinase, homodimeric domain HF888_RS11960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS11960 PF01627 Hpt domain HF888_RS11960 PF09078 CheY binding HF888_RS11965 PF00072 Response regulator receiver domain HF888_RS11980 PF18269 T3SS EscN ATPase C-terminal domain HF888_RS11980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HF888_RS11990 PF14842 FliG N-terminal domain HF888_RS11990 PF14841 FliG middle domain HF888_RS11990 PF01706 FliG C-terminal domain HF888_RS11995 PF01514 Secretory protein of YscJ/FliF family HF888_RS11995 PF08345 Flagellar M-ring protein C-terminal HF888_RS12000 PF02049 Flagellar hook-basal body complex protein FliE HF888_RS12005 PF00158 Sigma-54 interaction domain HF888_RS12005 PF02954 Bacterial regulatory protein, Fis family HF888_RS12005 PF00072 Response regulator receiver domain HF888_RS12010 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS12010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS12015 PF06490 Flagellar regulatory protein FleQ HF888_RS12015 PF02954 Bacterial regulatory protein, Fis family HF888_RS12015 PF00158 Sigma-54 interaction domain HF888_RS12020 PF02561 Flagellar protein FliS HF888_RS12030 PF07196 Flagellin hook IN motif HF888_RS12030 PF02465 Flagellar hook-associated protein 2 N-terminus HF888_RS12030 PF07195 Flagellar hook-associated protein 2 C-terminus HF888_RS12040 PF00700 Bacterial flagellin C-terminal helical region HF888_RS12040 PF00700 Bacterial flagellin C-terminal helical region HF888_RS12040 PF00669 Bacterial flagellin N-terminal helical region HF888_RS12040 PF00669 Bacterial flagellin N-terminal helical region HF888_RS12060 PF00977 Histidine biosynthesis protein HF888_RS12065 PF00117 Glutamine amidotransferase class-I HF888_RS12070 PF03102 NeuB family HF888_RS12070 PF08666 SAF domain HF888_RS12085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HF888_RS12090 PF02719 Polysaccharide biosynthesis protein HF888_RS12095 PF00669 Bacterial flagellin N-terminal helical region HF888_RS12100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HF888_RS12100 PF00460 Flagella basal body rod protein HF888_RS12105 PF10135 Rod binding protein HF888_RS12105 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HF888_RS12115 PF02119 Flagellar P-ring protein HF888_RS12120 PF02107 Flagellar L-ring protein HF888_RS12125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HF888_RS12125 PF00460 Flagella basal body rod protein HF888_RS12130 PF00460 Flagella basal body rod protein HF888_RS12130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HF888_RS12135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HF888_RS12135 PF00460 Flagella basal body rod protein HF888_RS12135 PF07559 Flagellar basal body protein FlaE HF888_RS12140 PF13860 FlgD Ig-like domain HF888_RS12140 PF03963 Flagellar hook capping protein - N-terminal region HF888_RS12140 PF13861 FlgD Tudor-like domain HF888_RS12145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HF888_RS12145 PF00460 Flagella basal body rod protein HF888_RS12150 PF00460 Flagella basal body rod protein HF888_RS12155 PF03705 CheR methyltransferase, all-alpha domain HF888_RS12155 PF01739 CheR methyltransferase, SAM binding domain HF888_RS12160 PF01584 CheW-like domain HF888_RS12160 PF00072 Response regulator receiver domain HF888_RS12190 PF00535 Glycosyl transferase family 2 HF888_RS12210 PF13673 Acetyltransferase (GNAT) domain HF888_RS12285 PF02371 Transposase IS116/IS110/IS902 family HF888_RS12285 PF01548 Transposase HF888_RS12290 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HF888_RS12290 PF14579 Helix-hairpin-helix motif HF888_RS12290 PF11490 DNA polymerase III polC-type N-terminus II HF888_RS12290 PF00929 Exonuclease HF888_RS12290 PF07733 Bacterial DNA polymerase III alpha NTPase domain HF888_RS12290 PF02811 PHP domain HF888_RS12305 PF03600 Citrate transporter HF888_RS12305 PF02080 TrkA-C domain HF888_RS12340 PF03435 Saccharopine dehydrogenase NADP binding domain HF888_RS12360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HF888_RS12365 PF00106 short chain dehydrogenase HF888_RS12375 PF08713 DNA alkylation repair enzyme HF888_RS12380 PF01261 Xylose isomerase-like TIM barrel HF888_RS12385 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HF888_RS12385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HF888_RS12390 PF08668 HDOD domain HF888_RS12395 PF07690 Major Facilitator Superfamily HF888_RS12400 PF03060 Nitronate monooxygenase HF888_RS12410 PF10369 Small subunit of acetolactate synthase HF888_RS12415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HF888_RS12415 PF00205 Thiamine pyrophosphate enzyme, central domain HF888_RS12415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HF888_RS12430 PF00849 RNA pseudouridylate synthase HF888_RS12430 PF01479 S4 domain HF888_RS12435 PF13525 Outer membrane lipoprotein HF888_RS12440 PF00448 SRP54-type protein, GTPase domain HF888_RS12440 PF02978 Signal peptide binding domain HF888_RS12440 PF02881 SRP54-type protein, helical bundle domain HF888_RS12450 PF01595 Cyclin M transmembrane N-terminal domain HF888_RS12450 PF00571 CBS domain HF888_RS12450 PF03471 Transporter associated domain HF888_RS12460 PF02222 ATP-grasp domain HF888_RS12460 PF01370 NAD dependent epimerase/dehydratase family HF888_RS12470 PF00132 Bacterial transferase hexapeptide (six repeats) HF888_RS12475 PF00293 NUDIX domain HF888_RS12485 PF00293 NUDIX domain HF888_RS12485 PF09297 NADH pyrophosphatase zinc ribbon domain HF888_RS12490 PF01784 NIF3 (NGG1p interacting factor 3) HF888_RS12495 PF03692 Putative zinc- or iron-chelating domain HF888_RS12530 PF01259 SAICAR synthetase HF888_RS12535 PF01804 Penicillin amidase HF888_RS12565 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HF888_RS12570 PF00364 Biotin-requiring enzyme HF888_RS12570 PF00682 HMGL-like HF888_RS12570 PF02436 Conserved carboxylase domain HF888_RS12575 PF04277 Oxaloacetate decarboxylase, gamma chain HF888_RS12580 PF01207 Dihydrouridine synthase (Dus) HF888_RS12585 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS12585 PF00989 PAS fold HF888_RS12585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS12595 PF00072 Response regulator receiver domain HF888_RS12595 PF00486 Transcriptional regulatory protein, C terminal HF888_RS12600 PF00072 Response regulator receiver domain HF888_RS12600 PF02954 Bacterial regulatory protein, Fis family HF888_RS12600 PF00158 Sigma-54 interaction domain HF888_RS12605 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HF888_RS12605 PF07685 CobB/CobQ-like glutamine amidotransferase domain HF888_RS12615 PF04073 Aminoacyl-tRNA editing domain HF888_RS12625 PF01638 HxlR-like helix-turn-helix HF888_RS12645 PF02599 Global regulator protein family HF888_RS12650 PF01842 ACT domain HF888_RS12650 PF00696 Amino acid kinase family HF888_RS12650 PF13840 ACT domain HF888_RS12655 PF02272 DHHA1 domain HF888_RS12655 PF01411 tRNA synthetases class II (A) HF888_RS12655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HF888_RS12680 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS12700 PF08241 Methyltransferase domain HF888_RS12705 PF08241 Methyltransferase domain HF888_RS12705 PF12697 Alpha/beta hydrolase family HF888_RS12710 PF00155 Aminotransferase class I and II HF888_RS12715 PF04055 Radical SAM superfamily HF888_RS12715 PF06968 Biotin and Thiamin Synthesis associated domain HF888_RS12720 PF00156 Phosphoribosyl transferase domain HF888_RS12725 PF01636 Phosphotransferase enzyme family HF888_RS12740 PF08468 Methyltransferase small domain N-terminal HF888_RS12740 PF05175 Methyltransferase small domain HF888_RS12750 PF04958 Arginine N-succinyltransferase beta subunit HF888_RS12755 PF00202 Aminotransferase class-III HF888_RS12760 PF01037 Lrp/AsnC ligand binding domain HF888_RS12765 PF03796 DnaB-like helicase C terminal domain HF888_RS12765 PF00772 DnaB-like helicase N terminal domain HF888_RS12770 PF01472 PUA domain HF888_RS12770 PF00696 Amino acid kinase family HF888_RS12775 PF01926 50S ribosome-binding GTPase HF888_RS12775 PF01018 GTP1/OBG HF888_RS12780 PF01016 Ribosomal L27 protein HF888_RS12785 PF00829 Ribosomal prokaryotic L21 protein HF888_RS12790 PF00348 Polyprenyl synthetase HF888_RS12795 PF11412 Disulphide bond corrector protein DsbC HF888_RS12795 PF02683 Cytochrome C biogenesis protein transmembrane region HF888_RS12805 PF03948 Ribosomal protein L9, C-terminal domain HF888_RS12805 PF01281 Ribosomal protein L9, N-terminal domain HF888_RS12815 PF01084 Ribosomal protein S18 HF888_RS12820 PF01250 Ribosomal protein S6 HF888_RS12825 PF00144 Beta-lactamase HF888_RS12835 PF01292 Prokaryotic cytochrome b561 HF888_RS12840 PF04264 YceI-like domain HF888_RS12850 PF01758 Sodium Bile acid symporter family HF888_RS12855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HF888_RS12860 PF01138 3' exoribonuclease family, domain 1 HF888_RS12860 PF03725 3' exoribonuclease family, domain 2 HF888_RS12860 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HF888_RS12860 PF00575 S1 RNA binding domain HF888_RS12860 PF00013 KH domain HF888_RS12865 PF00312 Ribosomal protein S15 HF888_RS12870 PF16198 tRNA pseudouridylate synthase B C-terminal domain HF888_RS12870 PF01509 TruB family pseudouridylate synthase (N terminal domain) HF888_RS12870 PF09157 Pseudouridine synthase II TruB, C-terminal HF888_RS12875 PF02033 Ribosome-binding factor A HF888_RS12880 PF11987 Translation-initiation factor 2 HF888_RS12880 PF00009 Elongation factor Tu GTP binding domain HF888_RS12880 PF08364 Bacterial translation initiation factor IF-2 associated region HF888_RS12880 PF04760 Translation initiation factor IF-2, N-terminal region HF888_RS12885 PF08529 NusA N-terminal domain HF888_RS12885 PF13184 NusA-like KH domain HF888_RS12890 PF02576 RimP N-terminal domain HF888_RS12890 PF17384 RimP C-terminal SH3 domain HF888_RS12905 PF03840 Preprotein translocase SecG subunit HF888_RS12910 PF00121 Triosephosphate isomerase HF888_RS12920 PF06480 FtsH Extracellular HF888_RS12920 PF17862 AAA+ lid domain HF888_RS12920 PF00004 ATPase family associated with various cellular activities (AAA) HF888_RS12920 PF01434 Peptidase family M41 HF888_RS12925 PF01985 CRS1 / YhbY (CRM) domain HF888_RS12930 PF00672 HAMP domain HF888_RS12930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS12935 PF00364 Biotin-requiring enzyme HF888_RS12935 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HF888_RS12935 PF02817 e3 binding domain HF888_RS12940 PF17831 Pyruvate dehydrogenase E1 component middle domain HF888_RS12940 PF00456 Transketolase, thiamine diphosphate binding domain HF888_RS12945 PF00300 Histidine phosphatase superfamily (branch 1) HF888_RS12950 PF02277 Phosphoribosyltransferase HF888_RS12955 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HF888_RS12965 PF00480 ROK family HF888_RS12975 PF01510 N-acetylmuramoyl-L-alanine amidase HF888_RS12980 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HF888_RS12980 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HF888_RS12995 PF07963 Prokaryotic N-terminal methylation motif HF888_RS12995 PF00114 Pilin (bacterial filament) HF888_RS13000 PF00437 Type II/IV secretion system protein HF888_RS13000 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HF888_RS13005 PF00482 Type II secretion system (T2SS), protein F HF888_RS13010 PF06750 Bacterial Peptidase A24 N-terminal domain HF888_RS13010 PF01478 Type IV leader peptidase family HF888_RS13015 PF01121 Dephospho-CoA kinase HF888_RS13020 PF03884 DNA gyrase inhibitor YacG HF888_RS13025 PF00293 NUDIX domain HF888_RS13030 PF01960 ArgJ family HF888_RS13035 PF02810 SEC-C motif HF888_RS13035 PF01043 SecA preprotein cross-linking domain HF888_RS13035 PF07516 SecA Wing and Scaffold domain HF888_RS13035 PF07517 SecA DEAD-like domain HF888_RS13040 PF01476 LysM domain HF888_RS13040 PF08525 Opacity-associated protein A N-terminal motif HF888_RS13040 PF01551 Peptidase family M23 HF888_RS13045 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HF888_RS13050 PF00091 Tubulin/FtsZ family, GTPase domain HF888_RS13050 PF12327 FtsZ family, C-terminal domain HF888_RS13055 PF02491 SHS2 domain inserted in FTSA HF888_RS13060 PF08478 POTRA domain, FtsQ-type HF888_RS13060 PF03799 Cell division protein FtsQ HF888_RS13065 PF01820 D-ala D-ala ligase N-terminus HF888_RS13065 PF07478 D-ala D-ala ligase C-terminus HF888_RS13070 PF02875 Mur ligase family, glutamate ligase domain HF888_RS13070 PF01225 Mur ligase family, catalytic domain HF888_RS13070 PF08245 Mur ligase middle domain HF888_RS13075 PF03033 Glycosyltransferase family 28 N-terminal domain HF888_RS13075 PF04101 Glycosyltransferase family 28 C-terminal domain HF888_RS13080 PF01098 Cell cycle protein HF888_RS13085 PF08245 Mur ligase middle domain HF888_RS13085 PF02875 Mur ligase family, glutamate ligase domain HF888_RS13090 PF00953 Glycosyl transferase family 4 HF888_RS13090 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HF888_RS13095 PF08245 Mur ligase middle domain HF888_RS13095 PF01225 Mur ligase family, catalytic domain HF888_RS13095 PF02875 Mur ligase family, glutamate ligase domain HF888_RS13100 PF08245 Mur ligase middle domain HF888_RS13100 PF01225 Mur ligase family, catalytic domain HF888_RS13100 PF02875 Mur ligase family, glutamate ligase domain HF888_RS13105 PF03717 Penicillin-binding Protein dimerisation domain HF888_RS13105 PF00905 Penicillin binding protein transpeptidase domain HF888_RS13115 PF01795 MraW methylase family HF888_RS13120 PF02381 MraZ protein, putative antitoxin-like HF888_RS13130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HF888_RS13135 PF04348 LppC putative lipoprotein HF888_RS13140 PF02021 Uncharacterised protein family UPF0102 HF888_RS13145 PF13580 SIS domain HF888_RS13150 PF04116 Fatty acid hydroxylase superfamily HF888_RS13160 PF02769 AIR synthase related protein, C-terminal domain HF888_RS13160 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HF888_RS13160 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HF888_RS13165 PF00497 Bacterial extracellular solute-binding proteins, family 3 HF888_RS13165 PF01464 Transglycosylase SLT domain HF888_RS13170 PF00132 Bacterial transferase hexapeptide (six repeats) HF888_RS13175 PF00588 SpoU rRNA Methylase family HF888_RS13180 PF00459 Inositol monophosphatase family HF888_RS13190 PF12343 Cold shock protein DEAD box A HF888_RS13190 PF00270 DEAD/DEAH box helicase HF888_RS13190 PF03880 DbpA RNA binding domain HF888_RS13190 PF00271 Helicase conserved C-terminal domain HF888_RS13195 PF09179 TilS substrate binding domain HF888_RS13195 PF11734 TilS substrate C-terminal domain HF888_RS13195 PF01171 PP-loop family HF888_RS13200 PF02811 PHP domain HF888_RS13200 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HF888_RS13200 PF14579 Helix-hairpin-helix motif HF888_RS13200 PF01336 OB-fold nucleic acid binding domain HF888_RS13200 PF07733 Bacterial DNA polymerase III alpha NTPase domain HF888_RS13215 PF00072 Response regulator receiver domain HF888_RS13215 PF00486 Transcriptional regulatory protein, C terminal HF888_RS13220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS13220 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS13220 PF00672 HAMP domain HF888_RS13220 PF16527 Two-component sensor protein CpxA, periplasmic domain HF888_RS13235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS13235 PF00672 HAMP domain HF888_RS13235 PF02743 Cache domain HF888_RS13245 PF00211 Adenylate and Guanylate cyclase catalytic domain HF888_RS13275 PF03806 AbgT putative transporter family HF888_RS13290 PF00793 DAHP synthetase I family HF888_RS13305 PF00072 Response regulator receiver domain HF888_RS13330 PF05209 Septum formation inhibitor MinC, N-terminal domain HF888_RS13330 PF03775 Septum formation inhibitor MinC, C-terminal domain HF888_RS13335 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HF888_RS13340 PF03776 Septum formation topological specificity factor MinE HF888_RS13355 PF00459 Inositol monophosphatase family HF888_RS13360 PF03280 Proteobacterial lipase chaperone protein HF888_RS13365 PF00561 alpha/beta hydrolase fold HF888_RS13370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS13370 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS13370 PF18158 Adaptive response protein AidB N-terminal domain HF888_RS13385 PF01627 Hpt domain HF888_RS13385 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HF888_RS13385 PF00072 Response regulator receiver domain HF888_RS13385 PF00672 HAMP domain HF888_RS13385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS13385 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS13390 PF03061 Thioesterase superfamily HF888_RS13395 PF02801 Beta-ketoacyl synthase, C-terminal domain HF888_RS13395 PF00109 Beta-ketoacyl synthase, N-terminal domain HF888_RS13415 PF02801 Beta-ketoacyl synthase, C-terminal domain HF888_RS13415 PF00109 Beta-ketoacyl synthase, N-terminal domain HF888_RS13420 PF01571 Aminomethyltransferase folate-binding domain HF888_RS13420 PF08669 Glycine cleavage T-protein C-terminal barrel domain HF888_RS13430 PF07977 FabA-like domain HF888_RS13440 PF01648 4'-phosphopantetheinyl transferase superfamily HF888_RS13450 PF00698 Acyl transferase domain HF888_RS13455 PF01272 Transcription elongation factor, GreA/GreB, C-term HF888_RS13455 PF03449 Transcription elongation factor, N-terminal HF888_RS13460 PF02142 MGS-like domain HF888_RS13460 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HF888_RS13460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HF888_RS13465 PF00117 Glutamine amidotransferase class-I HF888_RS13465 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HF888_RS13480 PF13230 Glutamine amidotransferases class-II HF888_RS13500 PF05173 Dihydrodipicolinate reductase, C-terminus HF888_RS13500 PF01113 Dihydrodipicolinate reductase, N-terminus HF888_RS13505 PF00684 DnaJ central domain HF888_RS13505 PF00226 DnaJ domain HF888_RS13505 PF01556 DnaJ C terminal domain HF888_RS13510 PF00012 Hsp70 protein HF888_RS13515 PF01025 GrpE HF888_RS13520 PF02463 RecF/RecN/SMC N terminal domain HF888_RS13525 PF01475 Ferric uptake regulator family HF888_RS13530 PF04355 SmpA / OmlA family HF888_RS13535 PF03658 RnfH family Ubiquitin HF888_RS13540 PF03364 Polyketide cyclase / dehydrase and lipid transport HF888_RS13545 PF00209 Sodium:neurotransmitter symporter family HF888_RS13550 PF01668 SmpB protein HF888_RS13575 PF03466 LysR substrate binding domain HF888_RS13575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS13585 PF01717 Cobalamin-independent synthase, Catalytic domain HF888_RS13585 PF08267 Cobalamin-independent synthase, N-terminal domain HF888_RS13590 PF01925 Sulfite exporter TauE/SafE HF888_RS13605 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS13605 PF00360 Phytochrome region HF888_RS13605 PF00563 EAL domain HF888_RS13605 PF01590 GAF domain HF888_RS13615 PF13188 PAS domain HF888_RS13615 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS13615 PF03707 Bacterial signalling protein N terminal repeat HF888_RS13615 PF00563 EAL domain HF888_RS13620 PF00196 Bacterial regulatory proteins, luxR family HF888_RS13620 PF00072 Response regulator receiver domain HF888_RS13625 PF00360 Phytochrome region HF888_RS13625 PF08446 PAS fold HF888_RS13625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS13625 PF01590 GAF domain HF888_RS13625 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS13630 PF00144 Beta-lactamase HF888_RS13635 PF00196 Bacterial regulatory proteins, luxR family HF888_RS13635 PF17874 MalT-like TPR region HF888_RS13655 PF00909 Ammonium Transporter Family HF888_RS13660 PF05985 Ethanolamine ammonia-lyase light chain (EutC) HF888_RS13665 PF06751 Ethanolamine ammonia lyase large subunit (EutB) HF888_RS13675 PF09317 Domain of unknown function (DUF1974) HF888_RS13675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS13675 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS13675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS13685 PF08447 PAS fold HF888_RS13685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS13690 PF17202 Single cache domain 3 HF888_RS13690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS13690 PF00672 HAMP domain HF888_RS13695 PF01300 Telomere recombination HF888_RS13695 PF03481 Putative GTP-binding controlling metal-binding HF888_RS13700 PF01507 Phosphoadenosine phosphosulfate reductase family HF888_RS13705 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) HF888_RS13710 PF00361 Proton-conducting membrane transporter HF888_RS13710 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HF888_RS13715 PF03466 LysR substrate binding domain HF888_RS13715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS13725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HF888_RS13725 PF00205 Thiamine pyrophosphate enzyme, central domain HF888_RS13725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HF888_RS13730 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HF888_RS13730 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HF888_RS13735 PF00939 Sodium:sulfate symporter transmembrane region HF888_RS13740 PF00210 Ferritin-like domain HF888_RS13745 PF00210 Ferritin-like domain HF888_RS13755 PF00005 ABC transporter HF888_RS13760 PF00497 Bacterial extracellular solute-binding proteins, family 3 HF888_RS13765 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS13770 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS13785 PF12697 Alpha/beta hydrolase family HF888_RS13790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HF888_RS13795 PF00873 AcrB/AcrD/AcrF family HF888_RS13800 PF13419 Haloacid dehalogenase-like hydrolase HF888_RS13815 PF00107 Zinc-binding dehydrogenase HF888_RS13815 PF08240 Alcohol dehydrogenase GroES-like domain HF888_RS13830 PF01169 Uncharacterized protein family UPF0016 HF888_RS13835 PF04055 Radical SAM superfamily HF888_RS13845 PF00563 EAL domain HF888_RS13845 PF00989 PAS fold HF888_RS13845 PF01590 GAF domain HF888_RS13845 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS13850 PF00762 Ferrochelatase HF888_RS13855 PF01266 FAD dependent oxidoreductase HF888_RS13860 PF02333 Phytase HF888_RS13865 PF00593 TonB dependent receptor HF888_RS13865 PF07715 TonB-dependent Receptor Plug Domain HF888_RS13875 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS13875 PF00072 Response regulator receiver domain HF888_RS13880 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HF888_RS13880 PF12833 Helix-turn-helix domain HF888_RS13910 PF00072 Response regulator receiver domain HF888_RS13910 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS13910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS13910 PF09308 LuxQ, periplasmic HF888_RS13915 PF00999 Sodium/hydrogen exchanger family HF888_RS13915 PF02254 TrkA-N domain HF888_RS13920 PF02525 Flavodoxin-like fold HF888_RS13925 PF00255 Glutathione peroxidase HF888_RS13930 PF03441 FAD binding domain of DNA photolyase HF888_RS13930 PF00875 DNA photolyase HF888_RS13935 PF03441 FAD binding domain of DNA photolyase HF888_RS13935 PF00875 DNA photolyase HF888_RS13945 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HF888_RS13950 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS13950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS13950 PF07689 KaiB domain HF888_RS13960 PF05726 Pirin C-terminal cupin domain HF888_RS13960 PF02678 Pirin HF888_RS13965 PF17954 Quercetinase C-terminal cupin domain HF888_RS13965 PF02678 Pirin HF888_RS13985 PF01227 GTP cyclohydrolase I HF888_RS13990 PF02152 Dihydroneopterin aldolase HF888_RS14015 PF13840 ACT domain HF888_RS14015 PF00696 Amino acid kinase family HF888_RS14020 PF06339 Ectoine synthase HF888_RS14025 PF00583 Acetyltransferase (GNAT) family HF888_RS14070 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HF888_RS14070 PF01266 FAD dependent oxidoreductase HF888_RS14085 PF03441 FAD binding domain of DNA photolyase HF888_RS14085 PF00875 DNA photolyase HF888_RS14095 PF04542 Sigma-70 region 2 HF888_RS14095 PF04545 Sigma-70, region 4 HF888_RS14105 PF00156 Phosphoribosyl transferase domain HF888_RS14110 PF00860 Permease family HF888_RS14115 PF00924 Mechanosensitive ion channel HF888_RS14115 PF05552 Conserved TM helix HF888_RS14145 PF01541 GIY-YIG catalytic domain HF888_RS14160 PF12843 Putative quorum-sensing-regulated virulence factor HF888_RS14165 PF00581 Rhodanese-like domain HF888_RS14190 PF06039 Malate:quinone oxidoreductase (Mqo) HF888_RS14205 PF02798 Glutathione S-transferase, N-terminal domain HF888_RS14215 PF04298 Putative neutral zinc metallopeptidase HF888_RS14220 PF04608 Phosphatidylglycerophosphatase A HF888_RS14235 PF09924 Uncharacterised conserved protein (DUF2156) HF888_RS14235 PF03706 Lysylphosphatidylglycerol synthase TM region HF888_RS14245 PF00585 C-terminal regulatory domain of Threonine dehydratase HF888_RS14245 PF00291 Pyridoxal-phosphate dependent enzyme HF888_RS14250 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HF888_RS14260 PF01557 Fumarylacetoacetate (FAA) hydrolase family HF888_RS14265 PF02913 FAD linked oxidases, C-terminal domain HF888_RS14265 PF01565 FAD binding domain HF888_RS14270 PF01842 ACT domain HF888_RS14270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HF888_RS14270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HF888_RS14275 PF12557 Cob(I)alamin adenosyltransferase N terminal HF888_RS14275 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HF888_RS14280 PF01497 Periplasmic binding protein HF888_RS14285 PF01032 FecCD transport family HF888_RS14290 PF00005 ABC transporter HF888_RS14295 PF00155 Aminotransferase class I and II HF888_RS14300 PF00501 AMP-binding enzyme HF888_RS14320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS14320 PF03466 LysR substrate binding domain HF888_RS14330 PF17131 Outer membrane lipoprotein-sorting protein HF888_RS14340 PF01804 Penicillin amidase HF888_RS14345 PF02355 Protein export membrane protein HF888_RS14345 PF07549 SecD/SecF GG Motif HF888_RS14350 PF07549 SecD/SecF GG Motif HF888_RS14350 PF02355 Protein export membrane protein HF888_RS14350 PF13721 SecD export protein N-terminal TM region HF888_RS14355 PF02699 Preprotein translocase subunit HF888_RS14365 PF02547 Queuosine biosynthesis protein HF888_RS14390 PF14814 Bifunctional transglycosylase second domain HF888_RS14390 PF00905 Penicillin binding protein transpeptidase domain HF888_RS14390 PF00912 Transglycosylase HF888_RS14395 PF00294 pfkB family carbohydrate kinase HF888_RS14400 PF00072 Response regulator receiver domain HF888_RS14400 PF00196 Bacterial regulatory proteins, luxR family HF888_RS14405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS14405 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS14405 PF00072 Response regulator receiver domain HF888_RS14405 PF09308 LuxQ, periplasmic HF888_RS14425 PF03739 Lipopolysaccharide export system permease LptF/LptG HF888_RS14430 PF03739 Lipopolysaccharide export system permease LptF/LptG HF888_RS14435 PF02789 Cytosol aminopeptidase family, N-terminal domain HF888_RS14435 PF00883 Cytosol aminopeptidase family, catalytic domain HF888_RS14450 PF18030 RimK PreATP-grasp domain HF888_RS14450 PF08443 RimK-like ATP-grasp domain HF888_RS14460 PF18030 RimK PreATP-grasp domain HF888_RS14460 PF08443 RimK-like ATP-grasp domain HF888_RS14465 PF04364 DNA polymerase III chi subunit, HolC HF888_RS14470 PF10458 Valyl tRNA synthetase tRNA binding arm HF888_RS14470 PF00133 tRNA synthetases class I (I, L, M and V) HF888_RS14470 PF08264 Anticodon-binding domain of tRNA HF888_RS14475 PF07969 Amidohydrolase family HF888_RS14485 PF01758 Sodium Bile acid symporter family HF888_RS14495 PF03144 Elongation factor Tu domain 2 HF888_RS14495 PF00009 Elongation factor Tu GTP binding domain HF888_RS14495 PF03143 Elongation factor Tu C-terminal domain HF888_RS14500 PF14492 Elongation Factor G, domain II HF888_RS14500 PF00679 Elongation factor G C-terminus HF888_RS14500 PF03144 Elongation factor Tu domain 2 HF888_RS14500 PF00009 Elongation factor Tu GTP binding domain HF888_RS14500 PF03764 Elongation factor G, domain IV HF888_RS14505 PF00177 Ribosomal protein S7p/S5e HF888_RS14510 PF00164 Ribosomal protein S12/S23 HF888_RS14515 PF04997 RNA polymerase Rpb1, domain 1 HF888_RS14515 PF05000 RNA polymerase Rpb1, domain 4 HF888_RS14515 PF04998 RNA polymerase Rpb1, domain 5 HF888_RS14515 PF00623 RNA polymerase Rpb1, domain 2 HF888_RS14515 PF04983 RNA polymerase Rpb1, domain 3 HF888_RS14520 PF04563 RNA polymerase beta subunit HF888_RS14520 PF00562 RNA polymerase Rpb2, domain 6 HF888_RS14520 PF04560 RNA polymerase Rpb2, domain 7 HF888_RS14520 PF10385 RNA polymerase beta subunit external 1 domain HF888_RS14520 PF04565 RNA polymerase Rpb2, domain 3 HF888_RS14520 PF04561 RNA polymerase Rpb2, domain 2 HF888_RS14525 PF16320 Ribosomal protein L7/L12 dimerisation domain HF888_RS14525 PF00542 Ribosomal protein L7/L12 C-terminal domain HF888_RS14530 PF00466 Ribosomal protein L10 HF888_RS14535 PF00687 Ribosomal protein L1p/L10e family HF888_RS14540 PF03946 Ribosomal protein L11, N-terminal domain HF888_RS14540 PF00298 Ribosomal protein L11, RNA binding domain HF888_RS14545 PF02357 Transcription termination factor nusG HF888_RS14545 PF00467 KOW motif HF888_RS14550 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HF888_RS14560 PF00892 EamA-like transporter family HF888_RS14565 PF00009 Elongation factor Tu GTP binding domain HF888_RS14565 PF03143 Elongation factor Tu C-terminal domain HF888_RS14565 PF03144 Elongation factor Tu domain 2 HF888_RS14590 PF03309 Type III pantothenate kinase HF888_RS14595 PF03099 Biotin/lipoate A/B protein ligase family HF888_RS14595 PF08279 HTH domain HF888_RS14595 PF02237 Biotin protein ligase C terminal domain HF888_RS14605 PF00709 Adenylosuccinate synthetase HF888_RS14610 PF13393 Histidyl-tRNA synthetase HF888_RS14615 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HF888_RS14620 PF01145 SPFH domain / Band 7 family HF888_RS14625 PF12221 Bacterial membrane protein N terminal HF888_RS14625 PF01145 SPFH domain / Band 7 family HF888_RS14630 PF01926 50S ribosome-binding GTPase HF888_RS14630 PF13167 GTP-binding GTPase N-terminal HF888_RS14630 PF16360 GTP-binding GTPase Middle Region HF888_RS14635 PF17209 Hfq protein HF888_RS14645 PF08676 MutL C terminal dimerisation domain HF888_RS14645 PF01119 DNA mismatch repair protein, C-terminal domain HF888_RS14650 PF01520 N-acetylmuramoyl-L-alanine amidase HF888_RS14650 PF11741 AMIN domain HF888_RS14655 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HF888_RS14660 PF01256 Carbohydrate kinase HF888_RS14660 PF03853 YjeF-related protein N-terminus HF888_RS14665 PF08331 Domain of unknown function (DUF1730) HF888_RS14670 PF00005 ABC transporter HF888_RS14670 PF00571 CBS domain HF888_RS14675 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS14680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HF888_RS14700 PF00929 Exonuclease HF888_RS14705 PF03193 RsgA GTPase HF888_RS14710 PF02666 Phosphatidylserine decarboxylase HF888_RS14715 PF00581 Rhodanese-like domain HF888_RS14725 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS14730 PF13677 Membrane MotB of proton-channel complex MotA/MotB HF888_RS14730 PF00691 OmpA family HF888_RS14740 PF08032 RNA 2'-O ribose methyltransferase substrate binding HF888_RS14740 PF00588 SpoU rRNA Methylase family HF888_RS14745 PF08206 Ribonuclease B OB domain HF888_RS14745 PF00575 S1 RNA binding domain HF888_RS14745 PF17876 Cold shock domain HF888_RS14745 PF08461 Ribonuclease R winged-helix domain HF888_RS14745 PF00773 RNB domain HF888_RS14755 PF13677 Membrane MotB of proton-channel complex MotA/MotB HF888_RS14755 PF00691 OmpA family HF888_RS14760 PF01618 MotA/TolQ/ExbB proton channel family HF888_RS14765 PF02609 Exonuclease VII small subunit HF888_RS14770 PF00348 Polyprenyl synthetase HF888_RS14775 PF02779 Transketolase, pyrimidine binding domain HF888_RS14775 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HF888_RS14775 PF02780 Transketolase, C-terminal domain HF888_RS14805 PF02627 Carboxymuconolactone decarboxylase family HF888_RS14830 PF07516 SecA Wing and Scaffold domain HF888_RS14830 PF01043 SecA preprotein cross-linking domain HF888_RS14830 PF07517 SecA DEAD-like domain HF888_RS14830 PF02810 SEC-C motif HF888_RS14865 PF01914 MarC family integral membrane protein HF888_RS14870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HF888_RS14870 PF02770 Acyl-CoA dehydrogenase, middle domain HF888_RS14870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HF888_RS14875 PF01053 Cys/Met metabolism PLP-dependent enzyme HF888_RS14880 PF00152 tRNA synthetases class II (D, K and N) HF888_RS14885 PF09285 Elongation factor P, C-terminal HF888_RS14885 PF08207 Elongation factor P (EF-P) KOW-like domain HF888_RS14885 PF01132 Elongation factor P (EF-P) OB domain HF888_RS14890 PF04055 Radical SAM superfamily HF888_RS14900 PF00563 EAL domain HF888_RS14900 PF08448 PAS fold HF888_RS14900 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS14910 PF00750 tRNA synthetases class I (R) HF888_RS14910 PF03485 Arginyl tRNA synthetase N terminal domain HF888_RS14910 PF05746 DALR anticodon binding domain HF888_RS14925 PF00227 Proteasome subunit HF888_RS14930 PF07724 AAA domain (Cdc48 subfamily) HF888_RS14930 PF00004 ATPase family associated with various cellular activities (AAA) HF888_RS14945 PF08546 Ketopantoate reductase PanE/ApbA C terminal HF888_RS14945 PF02558 Ketopantoate reductase PanE/ApbA HF888_RS14955 PF01209 ubiE/COQ5 methyltransferase family HF888_RS14965 PF03109 ABC1 family HF888_RS14970 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HF888_RS14975 PF01230 HIT domain HF888_RS14985 PF02416 mttA/Hcf106 family HF888_RS14990 PF00902 Sec-independent protein translocase protein (TatC) HF888_RS14995 PF00209 Sodium:neurotransmitter symporter family HF888_RS15005 PF00586 AIR synthase related protein, N-terminal domain HF888_RS15005 PF02769 AIR synthase related protein, C-terminal domain HF888_RS15010 PF01029 NusB family HF888_RS15015 PF00885 6,7-dimethyl-8-ribityllumazine synthase HF888_RS15020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HF888_RS15020 PF00925 GTP cyclohydrolase II HF888_RS15025 PF00677 Lumazine binding domain HF888_RS15030 PF01872 RibD C-terminal domain HF888_RS15030 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HF888_RS15035 PF03477 ATP cone domain HF888_RS15050 PF01040 UbiA prenyltransferase family HF888_RS15055 PF02628 Cytochrome oxidase assembly protein HF888_RS15075 PF00510 Cytochrome c oxidase subunit III HF888_RS15080 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 HF888_RS15085 PF00115 Cytochrome C and Quinol oxidase polypeptide I HF888_RS15090 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HF888_RS15090 PF02790 Cytochrome C oxidase subunit II, transmembrane domain HF888_RS15100 PF00521 DNA gyrase/topoisomerase IV, subunit A HF888_RS15100 PF03989 DNA gyrase C-terminal domain, beta-propeller HF888_RS15110 PF07722 Peptidase C26 HF888_RS15120 PF00204 DNA gyrase B HF888_RS15120 PF01751 Toprim domain HF888_RS15120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS15120 PF00986 DNA gyrase B subunit, carboxyl terminus HF888_RS15125 PF05728 Uncharacterised protein family (UPF0227) HF888_RS15130 PF02321 Outer membrane efflux protein HF888_RS15135 PF00293 NUDIX domain HF888_RS15145 PF00149 Calcineurin-like phosphoesterase HF888_RS15150 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HF888_RS15155 PF01467 Cytidylyltransferase-like HF888_RS15155 PF00294 pfkB family carbohydrate kinase HF888_RS15160 PF03279 Bacterial lipid A biosynthesis acyltransferase HF888_RS15175 PF01168 Alanine racemase, N-terminal domain HF888_RS15175 PF00842 Alanine racemase, C-terminal domain HF888_RS15180 PF01063 Amino-transferase class IV HF888_RS15185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HF888_RS15185 PF03466 LysR substrate binding domain HF888_RS15195 PF02626 Carboxyltransferase domain, subdomain A and B HF888_RS15205 PF03746 LamB/YcsF family HF888_RS15210 PF07286 Protein of unknown function (DUF1445) HF888_RS15215 PF01235 Sodium:alanine symporter family HF888_RS15220 PF00464 Serine hydroxymethyltransferase HF888_RS15225 PF00563 EAL domain HF888_RS15225 PF03707 Bacterial signalling protein N terminal repeat HF888_RS15225 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS15230 PF00005 ABC transporter HF888_RS15230 PF12848 ABC transporter HF888_RS15235 PF07238 PilZ domain HF888_RS15240 PF18073 Rubredoxin metal binding domain HF888_RS15245 PF03600 Citrate transporter HF888_RS15250 PF01208 Uroporphyrinogen decarboxylase (URO-D) HF888_RS15260 PF07992 Pyridine nucleotide-disulphide oxidoreductase HF888_RS15260 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HF888_RS15265 PF04898 Glutamate synthase central domain HF888_RS15265 PF00310 Glutamine amidotransferases class-II HF888_RS15265 PF01645 Conserved region in glutamate synthase HF888_RS15265 PF01493 GXGXG motif HF888_RS15270 PF13401 AAA domain HF888_RS15270 PF01471 Putative peptidoglycan binding domain HF888_RS15275 PF01761 3-dehydroquinate synthase HF888_RS15280 PF01202 Shikimate kinase HF888_RS15285 PF11741 AMIN domain HF888_RS15285 PF00263 Bacterial type II and III secretion system protein HF888_RS15285 PF03958 Bacterial type II/III secretion system short domain HF888_RS15285 PF07660 Secretin and TonB N terminus short domain HF888_RS15310 PF17092 Penicillin-binding protein OB-like domain HF888_RS15310 PF00912 Transglycosylase HF888_RS15310 PF00905 Penicillin binding protein transpeptidase domain HF888_RS15320 PF02580 D-Tyr-tRNA(Tyr) deacylase HF888_RS15330 PF00120 Glutamine synthetase, catalytic domain HF888_RS15330 PF03951 Glutamine synthetase, beta-Grasp domain HF888_RS15340 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS15340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS15340 PF00989 PAS fold HF888_RS15345 PF02954 Bacterial regulatory protein, Fis family HF888_RS15345 PF00072 Response regulator receiver domain HF888_RS15345 PF00158 Sigma-54 interaction domain HF888_RS15375 PF00114 Pilin (bacterial filament) HF888_RS15375 PF07963 Prokaryotic N-terminal methylation motif HF888_RS15380 PF00114 Pilin (bacterial filament) HF888_RS15380 PF07963 Prokaryotic N-terminal methylation motif HF888_RS15385 PF00482 Type II secretion system (T2SS), protein F HF888_RS15390 PF00437 Type II/IV secretion system protein HF888_RS15395 PF03958 Bacterial type II/III secretion system short domain HF888_RS15395 PF00263 Bacterial type II and III secretion system protein HF888_RS15425 PF00873 AcrB/AcrD/AcrF family HF888_RS15435 PF00436 Single-strand binding protein family HF888_RS15440 PF07690 Major Facilitator Superfamily HF888_RS15445 PF00196 Bacterial regulatory proteins, luxR family HF888_RS15450 PF17760 UvrA interaction domain HF888_RS15450 PF17755 UvrA DNA-binding domain HF888_RS15460 PF02028 BCCT, betaine/carnitine/choline family transporter HF888_RS15470 PF03710 Glutamate-ammonia ligase adenylyltransferase HF888_RS15470 PF08335 GlnD PII-uridylyltransferase HF888_RS15475 PF01063 Amino-transferase class IV HF888_RS15490 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS15495 PF08402 TOBE domain HF888_RS15495 PF00005 ABC transporter HF888_RS15505 PF01230 HIT domain HF888_RS15510 PF00282 Pyridoxal-dependent decarboxylase conserved domain HF888_RS15515 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) HF888_RS15525 PF04183 IucA / IucC family HF888_RS15525 PF06276 Ferric iron reductase FhuF-like transporter HF888_RS15545 PF01709 Transcriptional regulator HF888_RS15550 PF04191 Phospholipid methyltransferase HF888_RS15560 PF00005 ABC transporter HF888_RS15565 PF03707 Bacterial signalling protein N terminal repeat HF888_RS15565 PF00563 EAL domain HF888_RS15565 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS15570 PF00487 Fatty acid desaturase HF888_RS15575 PF17263 Family of unknown function (DUF5329) HF888_RS15580 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ HF888_RS15585 PF08338 Domain of unknown function (DUF1731) HF888_RS15585 PF01370 NAD dependent epimerase/dehydratase family HF888_RS15595 PF00528 Binding-protein-dependent transport system inner membrane component HF888_RS15600 PF00005 ABC transporter HF888_RS15600 PF03459 TOBE domain HF888_RS15610 PF00437 Type II/IV secretion system protein HF888_RS15615 PF01928 CYTH domain HF888_RS15620 PF00696 Amino acid kinase family HF888_RS15620 PF00583 Acetyltransferase (GNAT) family HF888_RS15635 PF00920 Dehydratase family HF888_RS15650 PF00919 Uncharacterized protein family UPF0004 HF888_RS15650 PF01938 TRAM domain HF888_RS15650 PF04055 Radical SAM superfamily HF888_RS15655 PF02562 PhoH-like protein HF888_RS15660 PF02130 Uncharacterized protein family UPF0054 HF888_RS15665 PF00571 CBS domain HF888_RS15665 PF03471 Transporter associated domain HF888_RS15670 PF00795 Carbon-nitrogen hydrolase HF888_RS15680 PF00034 Cytochrome c HF888_RS15685 PF00672 HAMP domain HF888_RS15685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS15695 PF13603 Leucyl-tRNA synthetase, Domain 2 HF888_RS15695 PF08264 Anticodon-binding domain of tRNA HF888_RS15695 PF00133 tRNA synthetases class I (I, L, M and V) HF888_RS15705 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HF888_RS15705 PF06144 DNA polymerase III, delta subunit HF888_RS15720 PF13409 Glutathione S-transferase, N-terminal domain HF888_RS15725 PF00588 SpoU rRNA Methylase family HF888_RS15730 PF01494 FAD binding domain HF888_RS15735 PF01494 FAD binding domain HF888_RS15740 PF05195 Aminopeptidase P, N-terminal domain HF888_RS15740 PF00557 Metallopeptidase family M24 HF888_RS15765 PF01812 5-formyltetrahydrofolate cyclo-ligase family HF888_RS15770 PF00512 His Kinase A (phospho-acceptor) domain HF888_RS15770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS15770 PF00497 Bacterial extracellular solute-binding proteins, family 3 HF888_RS15775 PF11849 Domain of unknown function (DUF3369) HF888_RS15810 PF01116 Fructose-bisphosphate aldolase class-II HF888_RS15815 PF00162 Phosphoglycerate kinase HF888_RS15830 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HF888_RS15830 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HF888_RS15835 PF02779 Transketolase, pyrimidine binding domain HF888_RS15835 PF02780 Transketolase, C-terminal domain HF888_RS15835 PF00456 Transketolase, thiamine diphosphate binding domain HF888_RS15845 PF00990 Diguanylate cyclase, GGDEF domain HF888_RS15845 PF17156 Gammaproteobacterial periplasmic sensor domain HF888_RS15850 PF04172 LrgB-like family HF888_RS15855 PF03788 LrgA family HF888_RS15860 PF00378 Enoyl-CoA hydratase/isomerase HF888_RS15865 PF03900 Porphobilinogen deaminase, C-terminal domain HF888_RS15865 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HF888_RS15870 PF02602 Uroporphyrinogen-III synthase HemD HF888_RS15895 PF00005 ABC transporter HF888_RS15895 PF00664 ABC transporter transmembrane region HF888_RS15900 PF00664 ABC transporter transmembrane region HF888_RS15900 PF00005 ABC transporter HF888_RS15905 PF02322 Cytochrome bd terminal oxidase subunit II HF888_RS15910 PF01654 Cytochrome bd terminal oxidase subunit I HF888_RS15915 PF03061 Thioesterase superfamily HF888_RS15920 PF00490 Delta-aminolevulinic acid dehydratase HF888_RS15925 PF13089 Polyphosphate kinase N-terminal domain HF888_RS15925 PF17941 Polyphosphate kinase C-terminal domain 1 HF888_RS15925 PF02503 Polyphosphate kinase middle domain HF888_RS15925 PF13090 Polyphosphate kinase C-terminal domain 2 HF888_RS15960 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HF888_RS15965 PF02600 Disulfide bond formation protein DsbB HF888_RS15975 PF04957 Ribosome modulation factor HF888_RS15980 PF04262 Glutamate-cysteine ligase HF888_RS15985 PF16921 Tex protein YqgF-like domain HF888_RS15985 PF00575 S1 RNA binding domain HF888_RS15985 PF17674 HHH domain HF888_RS15985 PF09371 Tex-like protein N-terminal domain HF888_RS16005 PF01339 CheB methylesterase HF888_RS16005 PF00072 Response regulator receiver domain HF888_RS16010 PF02895 Signal transducing histidine kinase, homodimeric domain HF888_RS16010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HF888_RS16010 PF01627 Hpt domain HF888_RS16010 PF00072 Response regulator receiver domain HF888_RS16010 PF01584 CheW-like domain HF888_RS16015 PF01739 CheR methyltransferase, SAM binding domain HF888_RS16015 PF03705 CheR methyltransferase, all-alpha domain HF888_RS16020 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HF888_RS16020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HF888_RS16025 PF01584 CheW-like domain HF888_RS16030 PF00072 Response regulator receiver domain HF888_RS16035 PF00072 Response regulator receiver domain HF888_RS16040 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HF888_RS16040 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HF888_RS16050 PF02622 Uncharacterized ACR, COG1678 HF888_RS16055 PF03652 Holliday junction resolvase HF888_RS16060 PF00156 Phosphoribosyl transferase domain HF888_RS16065 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HF888_RS16065 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HF888_RS16070 PF01979 Amidohydrolase family HF888_RS16090 PF00561 alpha/beta hydrolase fold HF888_RS16095 PF00909 Ammonium Transporter Family HF888_RS16100 PF00543 Nitrogen regulatory protein P-II HF888_RS16110 PF04955 HupE / UreJ protein HF888_RS16115 PF02492 CobW/HypB/UreG, nucleotide-binding domain HF888_RS16120 PF01730 UreF HF888_RS16125 PF05194 UreE urease accessory protein, C-terminal domain HF888_RS16125 PF02814 UreE urease accessory protein, N-terminal domain HF888_RS16130 PF00449 Urease alpha-subunit, N-terminal domain HF888_RS16130 PF01979 Amidohydrolase family HF888_RS16135 PF00699 Urease beta subunit HF888_RS16140 PF00547 Urease, gamma subunit HF888_RS16145 PF01774 UreD urease accessory protein HF888_RS16150 PF00005 ABC transporter HF888_RS16155 PF12399 Branched-chain amino acid ATP-binding cassette transporter HF888_RS16155 PF00005 ABC transporter HF888_RS16165 PF02653 Branched-chain amino acid transport system / permease component HF888_RS16175 PF00543 Nitrogen regulatory protein P-II HF888_RS16180 PF04380 Membrane fusogenic activity HF888_RS16185 PF01078 Magnesium chelatase, subunit ChlI HF888_RS16185 PF13335 Magnesium chelatase, subunit ChlI C-terminal HF888_RS16190 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HF888_RS16190 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HF888_RS16195 PF01037 Lrp/AsnC ligand binding domain HF888_RS16205 PF01037 Lrp/AsnC ligand binding domain HF888_RS16210 PF03575 Peptidase family S51 HF888_RS16215 PF01979 Amidohydrolase family HF888_RS16220 PF03606 C4-dicarboxylate anaerobic carrier HF888_RS16225 PF00593 TonB dependent receptor HF888_RS16225 PF07715 TonB-dependent Receptor Plug Domain HF888_RS16230 PF00202 Aminotransferase class-III HF888_RS16235 PF04958 Arginine N-succinyltransferase beta subunit HF888_RS16240 PF00171 Aldehyde dehydrogenase family HF888_RS16245 PF04996 Succinylarginine dihydrolase HF888_RS16250 PF10415 Fumarase C C-terminus HF888_RS16250 PF00206 Lyase HF888_RS16255 PF00107 Zinc-binding dehydrogenase HF888_RS16255 PF08240 Alcohol dehydrogenase GroES-like domain HF888_RS16260 PF00440 Bacterial regulatory proteins, tetR family HF888_RS16260 PF02909 Tetracyclin repressor-like, C-terminal domain HF888_RS16270 PF00156 Phosphoribosyl transferase domain HF888_RS16275 PF01131 DNA topoisomerase HF888_RS16275 PF01751 Toprim domain HF888_RS16305 PF01464 Transglycosylase SLT domain HF888_RS16345 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer HF888_RS16365 PF06834 TraU protein HF888_RS16375 PF06986 Type-1V conjugative transfer system mating pair stabilisation HF888_RS16410 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HF888_RS16415 PF17762 HTH domain found in ParB protein HF888_RS16415 PF02195 ParB-like nuclease domain