F542_RS00035	SM00936	Penicillin-binding protein 5, C-terminal domain 
F542_RS00050	SM00729	Elongator protein 3, MiaB family, Radical SAM
F542_RS00055	SM00382	ATPases associated with a variety of cellular activities
F542_RS00055	SM00962	SRP54-type protein, GTPase domain
F542_RS00055	SM00963	SRP54-type protein, helical bundle domain
F542_RS00105	SM00382	ATPases associated with a variety of cellular activities
F542_RS00150	SM00346	helix_turn_helix isocitrate lyase regulation
F542_RS00175	SM00478	endonuclease III
F542_RS00175	SM00525	F542_RS00175
F542_RS00200	SM00382	ATPases associated with a variety of cellular activities
F542_RS00200	SM01086	C-terminal, D2-small domain, of ClpB protein
F542_RS00215	SM00729	Elongator protein 3, MiaB family, Radical SAM
F542_RS00240	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
F542_RS00240	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
F542_RS00245	SM00649	Ribosomal protein L11/L12
F542_RS00270	SM00663	RNA polymerase I subunit A N-terminus
F542_RS00300	SM00825	Beta-ketoacyl synthase
F542_RS00310	SM00822	F542_RS00310
F542_RS00315	SM00825	Beta-ketoacyl synthase
F542_RS00330	SM00563	Phosphate acyltransferases
F542_RS00410	SM00387	Histidine kinase-like ATPases
F542_RS00420	SM00387	Histidine kinase-like ATPases
F542_RS00420	SM00388	His Kinase A (phosphoacceptor) domain
F542_RS00425	SM00448	cheY-homologous receiver domain
F542_RS00425	SM00862	Transcriptional regulatory protein, C terminal
F542_RS00460	SM00354	helix_turn _helix lactose operon repressor
F542_RS00490	SM00100	Cyclic nucleotide-monophosphate binding domain
F542_RS00490	SM00419	helix_turn_helix, cAMP Regulatory protein
F542_RS00565	SM00487	DEAD-like helicases superfamily
F542_RS00590	SM00342	helix_turn_helix, arabinose operon control protein
F542_RS00635	SM00563	Phosphate acyltransferases
F542_RS00675	SM00382	ATPases associated with a variety of cellular activities
F542_RS00750	SM01409	F542_RS00750
F542_RS00755	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
F542_RS00755	SM00954	Region found in RelA / SpoT proteins
F542_RS00770	SM00487	DEAD-like helicases superfamily
F542_RS00770	SM00490	helicase superfamily c-terminal domain
F542_RS00775	SM01403	F542_RS00775
F542_RS00795	SM01382	F542_RS00795
F542_RS00795	SM01383	F542_RS00795
F542_RS00810	SM00322	K homology RNA-binding domain
F542_RS00830	SM00382	ATPases associated with a variety of cellular activities
F542_RS00830	SM00760	Bacterial dnaA protein helix-turn-helix domain
F542_RS00835	SM00480	DNA polymerase III beta subunit
F542_RS00845	SM00487	DEAD-like helicases superfamily
F542_RS00845	SM00490	helicase superfamily c-terminal domain
F542_RS00845	SM00982	F542_RS00845
F542_RS00845	SM01058	CarD-like/TRCF domain
F542_RS00860	SM00974	F542_RS00860
F542_RS00865	SM00901	F542_RS00865
F542_RS00885	SM01230	F542_RS00885
F542_RS00895	SM00853	MutL C terminal dimerisation domain
F542_RS00895	SM01340	F542_RS00895
F542_RS00915	SM01004	Delta-aminolevulinic acid dehydratase
F542_RS00970	SM00257	Lysin motif
F542_RS01095	SM00836	DALR anticodon binding domain
F542_RS01095	SM01016	Arginyl tRNA synthetase N terminal dom
F542_RS01100	SM01374	F542_RS01100
F542_RS01105	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
F542_RS01170	SM00363	S4 RNA-binding domain
F542_RS01170	SM01390	F542_RS01170
F542_RS01175	SM00662	RNA polymerases D
F542_RS01205	SM00530	Helix-turn-helix XRE-family like proteins 
F542_RS01220	SM00870	F542_RS01220
F542_RS01285	SM00984	UDP binding domain
F542_RS01335	SM00382	ATPases associated with a variety of cellular activities
F542_RS01335	SM00962	SRP54-type protein, GTPase domain
F542_RS01335	SM00963	SRP54-type protein, helical bundle domain
F542_RS01340	SM00382	ATPases associated with a variety of cellular activities
F542_RS01365	SM00382	ATPases associated with a variety of cellular activities
F542_RS01410	SM00382	ATPases associated with a variety of cellular activities
F542_RS01435	SM00420	helix_turn_helix, Deoxyribose operon repressor
F542_RS01435	SM01134	F542_RS01435
F542_RS01445	SM00062	Bacterial periplasmic substrate-binding proteins
F542_RS01465	SM00851	MGS-like domain
F542_RS01465	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
F542_RS01470	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
F542_RS01480	SM00729	Elongator protein 3, MiaB family, Radical SAM
F542_RS01500	SM00859	Semialdehyde dehydrogenase, NAD binding domain
F542_RS01535	SM00363	S4 RNA-binding domain
F542_RS01545	SM00640	Glycosyl hydrolases family 32
F542_RS01550	SM00354	helix_turn _helix lactose operon repressor
F542_RS01595	SM00382	ATPases associated with a variety of cellular activities
F542_RS01625	SM00825	Beta-ketoacyl synthase
F542_RS01675	SM01152	F542_RS01675
F542_RS01710	SM01133	F542_RS01710
F542_RS01805	SM00062	Bacterial periplasmic substrate-binding proteins
F542_RS01810	SM00382	ATPases associated with a variety of cellular activities
F542_RS01865	SM00903	Flavin reductase like domain
F542_RS01900	SM00316	Ribosomal protein S1-like RNA-binding domain
F542_RS01940	SM00729	Elongator protein 3, MiaB family, Radical SAM
F542_RS01940	SM00876	Biotin and Thiamin Synthesis associated domain
F542_RS01945	SM00363	S4 RNA-binding domain
F542_RS01955	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
F542_RS01965	SM00450	Rhodanese Homology Domain
F542_RS02025	SM01387	F542_RS02025
F542_RS02035	SM00986	Uracil DNA glycosylase superfamily
F542_RS02035	SM00987	UreE urease accessory protein, C-terminal domain 
F542_RS02050	SM00028	Tetratricopeptide repeats
F542_RS02070	SM00382	ATPases associated with a variety of cellular activities
F542_RS02070	SM00994	ClpX C4-type zinc finger
F542_RS02070	SM01086	C-terminal, D2-small domain, of ClpB protein
F542_RS02110	SM00642	Alpha-amylase domain
F542_RS02120	SM00382	ATPases associated with a variety of cellular activities
F542_RS02235	SM00860	SMI1 / KNR4 family
F542_RS02250	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
F542_RS02265	SM01240	F542_RS02265
F542_RS02315	SM01022	F542_RS02315
F542_RS02325	SM00382	ATPases associated with a variety of cellular activities
F542_RS02355	SM00116	Domain in cystathionine beta-synthase and other proteins.
F542_RS02370	SM00342	helix_turn_helix, arabinose operon control protein
F542_RS02490	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
F542_RS02560	SM00749	bacterial OsmY and nodulation domain
F542_RS02565	SM00382	ATPases associated with a variety of cellular activities
F542_RS02625	SM00387	Histidine kinase-like ATPases
F542_RS02625	SM00433	TopoisomeraseII
F542_RS02650	SM00530	Helix-turn-helix XRE-family like proteins 
F542_RS02655	SM00382	ATPases associated with a variety of cellular activities
F542_RS02680	SM00382	ATPases associated with a variety of cellular activities
F542_RS02700	SM00644	F542_RS02700
F542_RS02740	SM00530	Helix-turn-helix XRE-family like proteins 
F542_RS02750	SM00530	Helix-turn-helix XRE-family like proteins 
F542_RS02780	SM01018	B12 binding domain
F542_RS02800	SM00411	bacterial (prokaryotic) histone like domain
F542_RS02805	SM00937	F542_RS02805
F542_RS02840	SM00382	ATPases associated with a variety of cellular activities
F542_RS02870	SM00518	AP endonuclease family 2
F542_RS02900	SM00917	LeuA allosteric (dimerisation) domain
F542_RS02965	SM00257	Lysin motif
F542_RS02965	SM00646	F542_RS02965
F542_RS02975	SM00479	F542_RS02975
F542_RS02995	SM00481	DNA polymerase alpha chain like domain
F542_RS03025	SM00796	Allophanate hydrolase subunit 1
F542_RS03030	SM00797	Allophanate hydrolase subunit 2
F542_RS03085	SM00382	ATPases associated with a variety of cellular activities
F542_RS03090	SM00062	Bacterial periplasmic substrate-binding proteins
F542_RS03090	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
F542_RS03110	SM00342	helix_turn_helix, arabinose operon control protein
F542_RS03165	SM00460	Transglutaminase/protease-like homologues
F542_RS03185	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
F542_RS03215	SM00382	ATPases associated with a variety of cellular activities
F542_RS03240	SM01323	F542_RS03240
F542_RS03305	SM00382	ATPases associated with a variety of cellular activities
F542_RS03355	SM00855	Phosphoglycerate mutase family
F542_RS03395	SM00861	Transketolase, pyrimidine binding domain
F542_RS03400	SM00732	Likely ribonuclease with RNase H fold.
F542_RS03445	SM00957	SecA DEAD-like domain
F542_RS03445	SM00958	SecA preprotein cross-linking domain
F542_RS03500	SM00382	ATPases associated with a variety of cellular activities
F542_RS03505	SM00563	Phosphate acyltransferases
F542_RS03515	SM01219	F542_RS03515
F542_RS03520	SM00341	Helicase and RNase D C-terminal
F542_RS03520	SM00487	DEAD-like helicases superfamily
F542_RS03520	SM00490	helicase superfamily c-terminal domain
F542_RS03520	SM00956	F542_RS03520
F542_RS03535	SM01192	F542_RS03535
F542_RS03535	SM01193	F542_RS03535
F542_RS03540	SM00382	ATPases associated with a variety of cellular activities
F542_RS03550	SM00316	Ribosomal protein S1-like RNA-binding domain
F542_RS03550	SM00732	Likely ribonuclease with RNase H fold.
F542_RS03555	SM00387	Histidine kinase-like ATPases
F542_RS03620	SM00382	ATPases associated with a variety of cellular activities
F542_RS03620	SM00930	F542_RS03620
F542_RS03640	SM01103	F542_RS03640
F542_RS03645	SM00014	Acid phosphatase homologues
F542_RS03655	SM00849	Metallo-beta-lactamase superfamily
F542_RS03670	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
F542_RS03680	SM00935	Outer membrane protein (OmpH-like)
F542_RS03705	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
F542_RS03705	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
F542_RS03725	SM00382	ATPases associated with a variety of cellular activities
F542_RS03730	SM00487	DEAD-like helicases superfamily
F542_RS03730	SM00491	F542_RS03730
F542_RS03745	SM00382	ATPases associated with a variety of cellular activities
F542_RS03750	SM00434	DNA Topoisomerase IV
F542_RS03775	SM00830	Chorismate mutase type II
F542_RS03810	SM00729	Elongator protein 3, MiaB family, Radical SAM
F542_RS03870	SM00650	Ribosomal RNA adenine dimethylases
F542_RS03925	SM00382	ATPases associated with a variety of cellular activities
F542_RS03935	SM00954	Region found in RelA / SpoT proteins
F542_RS03980	SM00382	ATPases associated with a variety of cellular activities
F542_RS04000	SM00354	helix_turn _helix lactose operon repressor
F542_RS04025	SM00937	F542_RS04025
F542_RS04040	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
F542_RS04075	SM00116	Domain in cystathionine beta-synthase and other proteins.
F542_RS04075	SM01091	Transporter associated domain
F542_RS04180	SM00271	DnaJ molecular chaperone homology domain
F542_RS04215	SM00841	Elongation factor P, C-terminal
F542_RS04215	SM01185	F542_RS04215
F542_RS04240	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
F542_RS04285	SM00463	Small MutS-related domain
F542_RS04295	SM00091	PAS domain
F542_RS04295	SM00387	Histidine kinase-like ATPases
F542_RS04295	SM00388	His Kinase A (phosphoacceptor) domain
F542_RS04295	SM00448	cheY-homologous receiver domain
F542_RS04300	SM00316	Ribosomal protein S1-like RNA-binding domain
F542_RS04300	SM00322	K homology RNA-binding domain
F542_RS04305	SM00028	Tetratricopeptide repeats
F542_RS04310	SM00487	DEAD-like helicases superfamily
F542_RS04310	SM00490	helicase superfamily c-terminal domain
F542_RS04330	SM00861	Transketolase, pyrimidine binding domain
F542_RS04345	SM00729	Elongator protein 3, MiaB family, Radical SAM
F542_RS04395	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
F542_RS04400	SM00382	ATPases associated with a variety of cellular activities
F542_RS04475	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
F542_RS04475	SM00091	PAS domain
F542_RS04480	SM00764	Citrate lyase ligase C-terminal domain
F542_RS04510	SM01329	F542_RS04510
F542_RS04530	SM00382	ATPases associated with a variety of cellular activities
F542_RS04535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
F542_RS04535	SM00387	Histidine kinase-like ATPases
F542_RS04535	SM00388	His Kinase A (phosphoacceptor) domain
F542_RS04540	SM00448	cheY-homologous receiver domain
F542_RS04540	SM00862	Transcriptional regulatory protein, C terminal
F542_RS04605	SM00100	Cyclic nucleotide-monophosphate binding domain
F542_RS04605	SM00419	helix_turn_helix, cAMP Regulatory protein
F542_RS04685	SM00849	Metallo-beta-lactamase superfamily
F542_RS04690	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
F542_RS04690	SM00474	3'-5' exonuclease
F542_RS04690	SM00475	5'-3' exonuclease
F542_RS04690	SM00482	DNA polymerase A domain
F542_RS04705	SM00382	ATPases associated with a variety of cellular activities
F542_RS04715	SM00487	DEAD-like helicases superfamily
F542_RS04715	SM00490	helicase superfamily c-terminal domain
F542_RS04735	SM00855	Phosphoglycerate mutase family
F542_RS04765	SM00116	Domain in cystathionine beta-synthase and other proteins.
F542_RS04765	SM01240	F542_RS04765
F542_RS04780	SM00642	Alpha-amylase domain
F542_RS04785	SM00642	Alpha-amylase domain
F542_RS04835	SM00316	Ribosomal protein S1-like RNA-binding domain
F542_RS04835	SM00322	K homology RNA-binding domain
F542_RS04860	SM00382	ATPases associated with a variety of cellular activities
F542_RS04860	SM01086	C-terminal, D2-small domain, of ClpB protein
F542_RS04890	SM00382	ATPases associated with a variety of cellular activities
F542_RS04895	SM00382	ATPases associated with a variety of cellular activities
F542_RS04915	SM00840	F542_RS04915
F542_RS04935	SM00919	Malic enzyme, NAD binding domain
F542_RS04935	SM01274	F542_RS04935
F542_RS04945	SM00912	haemagglutination activity domain
F542_RS04980	SM00487	DEAD-like helicases superfamily
F542_RS04985	SM01321	F542_RS04985
F542_RS05025	SM00382	ATPases associated with a variety of cellular activities
F542_RS05045	SM00382	ATPases associated with a variety of cellular activities
F542_RS05050	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
F542_RS05050	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
F542_RS05050	SM00493	F542_RS05050
F542_RS05070	SM00420	helix_turn_helix, Deoxyribose operon repressor
F542_RS05070	SM01134	F542_RS05070
F542_RS05085	SM00382	ATPases associated with a variety of cellular activities
F542_RS05085	SM00464	Found in ATP-dependent protease La (LON)
F542_RS05105	SM00421	helix_turn_helix, Lux Regulon
F542_RS05130	SM00478	endonuclease III
F542_RS05130	SM00525	F542_RS05130
F542_RS05140	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
F542_RS05225	SM00870	F542_RS05225
F542_RS05250	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
F542_RS05265	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
F542_RS05275	SM00316	Ribosomal protein S1-like RNA-binding domain
F542_RS05280	SM00411	bacterial (prokaryotic) histone like domain
F542_RS05290	SM00028	Tetratricopeptide repeats
F542_RS05295	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
F542_RS05315	SM00474	3'-5' exonuclease
F542_RS05365	SM00798	AICARFT/IMPCHase bienzyme
F542_RS05365	SM00851	MGS-like domain
F542_RS05370	SM01209	F542_RS05370
F542_RS05370	SM01210	F542_RS05370
F542_RS05380	SM01001	AIR carboxylase
F542_RS05405	SM01011	Aminopeptidase P, N-terminal domain
F542_RS05410	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
F542_RS05410	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
F542_RS05410	SM00493	F542_RS05410
F542_RS05445	SM00843	F542_RS05445
F542_RS05450	SM00344	helix_turn_helix ASNC type
F542_RS05460	SM00382	ATPases associated with a variety of cellular activities
F542_RS05475	SM00316	Ribosomal protein S1-like RNA-binding domain
F542_RS05475	SM00357	Cold shock protein domain
F542_RS05475	SM00955	F542_RS05475
F542_RS05530	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
F542_RS05555	SM00342	helix_turn_helix, arabinose operon control protein
F542_RS05560	SM00729	Elongator protein 3, MiaB family, Radical SAM
F542_RS05610	SM00382	ATPases associated with a variety of cellular activities
F542_RS05650	SM00387	Histidine kinase-like ATPases
F542_RS05650	SM00433	TopoisomeraseII
F542_RS05660	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
F542_RS05680	SM00382	ATPases associated with a variety of cellular activities
F542_RS05685	SM00382	ATPases associated with a variety of cellular activities
F542_RS05770	SM00487	DEAD-like helicases superfamily
F542_RS05770	SM00490	helicase superfamily c-terminal domain
F542_RS05775	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
F542_RS05790	SM01329	F542_RS05790
F542_RS05795	SM00829	Enoylreductase
F542_RS05845	SM01130	F542_RS05845
F542_RS05875	SM00382	ATPases associated with a variety of cellular activities
F542_RS05890	SM00925	MltA specific insert domain
F542_RS05920	SM00434	DNA Topoisomerase IV
F542_RS05935	SM00481	DNA polymerase alpha chain like domain
F542_RS05965	SM01400	F542_RS05965
F542_RS06030	SM00357	Cold shock protein domain
F542_RS06035	SM00947	Carbonic anhydrase
F542_RS06055	SM00411	bacterial (prokaryotic) histone like domain
F542_RS06060	SM00873	B3/4 domain
F542_RS06060	SM00874	tRNA synthetase B5 domain
F542_RS06060	SM00896	Ferredoxin-fold anticodon binding domain
F542_RS06080	SM00287	Bacterial SH3 domain homologues
F542_RS06090	SM00316	Ribosomal protein S1-like RNA-binding domain
F542_RS06125	SM01130	F542_RS06125
F542_RS06190	SM00912	haemagglutination activity domain
F542_RS06205	SM00382	ATPases associated with a variety of cellular activities
F542_RS06210	SM00382	ATPases associated with a variety of cellular activities
F542_RS06230	SM00528	Domain in histone-like proteins of HNS family
F542_RS06240	SM00382	ATPases associated with a variety of cellular activities
F542_RS06250	SM00382	ATPases associated with a variety of cellular activities
F542_RS06295	SM00382	ATPases associated with a variety of cellular activities
F542_RS06330	SM00358	Double-stranded RNA binding motif
F542_RS06330	SM00535	Ribonuclease III family
F542_RS06360	SM00855	Phosphoglycerate mutase family
F542_RS06370	SM00382	ATPases associated with a variety of cellular activities
F542_RS06425	SM00363	S4 RNA-binding domain
F542_RS06500	SM00382	ATPases associated with a variety of cellular activities
F542_RS06500	SM00487	DEAD-like helicases superfamily
F542_RS06500	SM00490	helicase superfamily c-terminal domain
F542_RS06500	SM00847	Helicase associated domain (HA2)  Add an annotation
F542_RS06510	SM00244	prohibitin homologues
F542_RS06515	SM01005	Alanine racemase, C-terminal domain
F542_RS06525	SM01118	F542_RS06525
F542_RS06560	SM00852	Probable molybdopterin binding domain
F542_RS06570	SM00382	ATPases associated with a variety of cellular activities
F542_RS06595	SM00882	Coenzyme A transferase
F542_RS06600	SM00882	Coenzyme A transferase
F542_RS06610	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
F542_RS06655	SM00271	DnaJ molecular chaperone homology domain
F542_RS06740	SM00927	DNA mismatch repair enzyme MutH
F542_RS06765	SM00883	Chaperonin 10 Kd subunit
F542_RS06775	SM00354	helix_turn _helix lactose operon repressor
F542_RS06885	SM00318	Staphylococcal nuclease homologues
F542_RS06905	SM00981	F542_RS06905
F542_RS06915	SM00072	Guanylate kinase homologues.
F542_RS06980	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
F542_RS07010	SM00387	Histidine kinase-like ATPases
F542_RS07010	SM00388	His Kinase A (phosphoacceptor) domain
F542_RS07015	SM00421	helix_turn_helix, Lux Regulon
F542_RS07015	SM00448	cheY-homologous receiver domain
F542_RS07035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
F542_RS07050	SM00420	helix_turn_helix, Deoxyribose operon repressor
F542_RS07050	SM01134	F542_RS07050
F542_RS07115	SM00382	ATPases associated with a variety of cellular activities
F542_RS07215	SM00382	ATPases associated with a variety of cellular activities
F542_RS07240	SM00487	DEAD-like helicases superfamily
F542_RS07240	SM00490	helicase superfamily c-terminal domain
F542_RS07270	SM00382	ATPases associated with a variety of cellular activities
F542_RS07275	SM00710	Parallel beta-helix repeats
F542_RS07300	SM00479	F542_RS07300
F542_RS07315	SM00382	ATPases associated with a variety of cellular activities
F542_RS07330	SM00278	Helix-hairpin-helix DNA-binding motif class 1
F542_RS07335	SM00382	ATPases associated with a variety of cellular activities
F542_RS07350	SM00967	RNA 2'-O ribose methyltransferase substrate binding
F542_RS07360	SM00861	Transketolase, pyrimidine binding domain
F542_RS07380	SM00450	Rhodanese Homology Domain
F542_RS07435	SM00981	F542_RS07435
F542_RS07440	SM00859	Semialdehyde dehydrogenase, NAD binding domain
F542_RS07490	SM00278	Helix-hairpin-helix DNA-binding motif class 1
F542_RS07490	SM00465	GIY-YIG type nucleases (URI domain)
F542_RS07525	SM00849	Metallo-beta-lactamase superfamily
F542_RS07540	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
F542_RS07540	SM00245	tail specific protease
F542_RS07545	SM00945	ProQ/FINO family
F542_RS07580	SM00363	S4 RNA-binding domain
F542_RS07605	SM00900	F542_RS07605
F542_RS07650	SM00382	ATPases associated with a variety of cellular activities
F542_RS07710	SM00900	F542_RS07710
F542_RS07755	SM00382	ATPases associated with a variety of cellular activities
F542_RS07765	SM00382	ATPases associated with a variety of cellular activities
F542_RS07795	SM00487	DEAD-like helicases superfamily
F542_RS07795	SM00490	helicase superfamily c-terminal domain
F542_RS07810	SM00382	ATPases associated with a variety of cellular activities
F542_RS07840	SM00382	ATPases associated with a variety of cellular activities
F542_RS07860	SM00830	Chorismate mutase type II
F542_RS07870	SM00881	CoA binding domain
F542_RS07895	SM00729	Elongator protein 3, MiaB family, Radical SAM
F542_RS07940	SM01350	F542_RS07940
F542_RS07955	SM00771	ZipA, C-terminal domain (FtsZ-binding)
F542_RS07960	SM00278	Helix-hairpin-helix DNA-binding motif class 1
F542_RS07960	SM00292	breast cancer carboxy-terminal domain
F542_RS07960	SM00532	Ligase N family
F542_RS08035	SM00155	Phospholipase D. Active site motifs.
F542_RS08045	SM00904	Riboflavin kinase
F542_RS08085	SM00382	ATPases associated with a variety of cellular activities
F542_RS08125	SM00864	Tubulin/FtsZ family, GTPase domain
F542_RS08125	SM00865	Tubulin/FtsZ family, C-terminal domain
F542_RS08130	SM00842	Cell division protein FtsA
F542_RS08215	SM00345	helix_turn_helix gluconate operon transcriptional repressor
F542_RS08235	SM00562	F542_RS08235
F542_RS08280	SM00421	helix_turn_helix, Lux Regulon
F542_RS08285	SM00642	Alpha-amylase domain
F542_RS08305	SM00382	ATPases associated with a variety of cellular activities
F542_RS08325	SM00493	F542_RS08325
F542_RS08355	SM00316	Ribosomal protein S1-like RNA-binding domain
F542_RS08355	SM00357	Cold shock protein domain
F542_RS08355	SM00955	F542_RS08355
F542_RS08360	SM00971	Serine acetyltransferase, N-terminal
F542_RS08375	SM00450	Rhodanese Homology Domain
F542_RS08385	SM00257	Lysin motif
F542_RS08430	SM01321	F542_RS08430
F542_RS08495	SM00363	S4 RNA-binding domain
F542_RS08515	SM00788	Adenylosuccinate synthetase
F542_RS08520	SM00244	prohibitin homologues
F542_RS08525	SM00244	prohibitin homologues
F542_RS08575	SM00382	ATPases associated with a variety of cellular activities
F542_RS08625	SM00479	F542_RS08625
F542_RS08670	SM00878	Biotin carboxylase C-terminal domain
F542_RS08695	SM01091	Transporter associated domain
F542_RS08700	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
F542_RS08700	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
F542_RS08710	SM00244	prohibitin homologues
F542_RS08735	SM00422	helix_turn_helix, mercury resistance
F542_RS08750	SM00869	Autotransporter beta-domain
F542_RS08765	SM00028	Tetratricopeptide repeats
F542_RS08800	SM00382	ATPases associated with a variety of cellular activities
F542_RS08820	SM00731	SprT homologues.
F542_RS08835	SM00487	DEAD-like helicases superfamily
F542_RS08835	SM00490	helicase superfamily c-terminal domain
F542_RS08840	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
F542_RS08920	SM00316	Ribosomal protein S1-like RNA-binding domain
F542_RS08935	SM00822	F542_RS08935
F542_RS08940	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
F542_RS08955	SM01091	Transporter associated domain
F542_RS08990	SM00382	ATPases associated with a variety of cellular activities
F542_RS09045	SM00400	zinc finger
F542_RS09045	SM00493	F542_RS09045
F542_RS09045	SM00766	DNA primase DnaG DnaB-binding
F542_RS09065	SM00838	Elongation factor G C-terminus
F542_RS09065	SM00889	Elongation factor G, domain IV
F542_RS09080	SM00967	RNA 2'-O ribose methyltransferase substrate binding
F542_RS09090	SM00357	Cold shock protein domain
F542_RS09090	SM00382	ATPases associated with a variety of cellular activities
F542_RS09090	SM00959	Rho termination factor, N-terminal domain
F542_RS09110	SM00363	S4 RNA-binding domain
F542_RS09195	SM00382	ATPases associated with a variety of cellular activities
F542_RS09235	SM00278	Helix-hairpin-helix DNA-binding motif class 1
F542_RS09255	SM00344	helix_turn_helix ASNC type
F542_RS09315	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
F542_RS09360	SM01321	F542_RS09360
F542_RS09375	SM01211	F542_RS09375
F542_RS09385	SM01235	F542_RS09385
F542_RS09400	SM01234	F542_RS09400
F542_RS09460	SM00854	Bacterial capsule synthesis protein PGA_cap
F542_RS09545	SM00977	TilS substrate C-terminal domain
F542_RS09555	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
F542_RS09630	SM00869	Autotransporter beta-domain
F542_RS09635	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
F542_RS09635	SM01232	F542_RS09635
F542_RS09740	SM00829	Enoylreductase
F542_RS09930	SM00382	ATPases associated with a variety of cellular activities
F542_RS09945	SM00271	DnaJ molecular chaperone homology domain
F542_RS09950	SM00448	cheY-homologous receiver domain
F542_RS09950	SM00862	Transcriptional regulatory protein, C terminal
F542_RS09960	SM00905	Dihydroneopterin aldolase
F542_RS09965	SM01207	F542_RS09965
F542_RS10010	SM00938	Nitrogen regulatory protein P-II
F542_RS10020	SM00852	Probable molybdopterin binding domain
F542_RS10100	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
F542_RS10120	SM00420	helix_turn_helix, Deoxyribose operon repressor
F542_RS10120	SM01134	F542_RS10120
F542_RS10130	SM01007	Class II Aldolase and Adducin N-terminal domain
F542_RS10135	SM00869	Autotransporter beta-domain
F542_RS10160	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
F542_RS10160	SM00534	ATPase domain of DNA mismatch repair MUTS family
F542_RS10215	SM00347	helix_turn_helix multiple antibiotic resistance protein
F542_RS10240	SM00563	Phosphate acyltransferases
F542_RS10315	SM00829	Enoylreductase
F542_RS10330	SM00671	Sel1-like repeats.
F542_RS10360	SM00347	helix_turn_helix multiple antibiotic resistance protein
F542_RS10370	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
F542_RS10460	SM00382	ATPases associated with a variety of cellular activities
F542_RS10470	SM00354	helix_turn _helix lactose operon repressor
F542_RS10555	SM00342	helix_turn_helix, arabinose operon control protein
F542_RS10580	SM00342	helix_turn_helix, arabinose operon control protein
F542_RS10605	SM00903	Flavin reductase like domain
F542_RS10615	SM00849	Metallo-beta-lactamase superfamily
F542_RS10620	SM00849	Metallo-beta-lactamase superfamily
F542_RS10640	SM00382	ATPases associated with a variety of cellular activities
F542_RS10680	SM00382	ATPases associated with a variety of cellular activities
F542_RS10690	SM00382	ATPases associated with a variety of cellular activities
F542_RS10700	SM00448	cheY-homologous receiver domain
F542_RS10715	SM01228	F542_RS10715
F542_RS10730	SM00869	Autotransporter beta-domain
F542_RS10740	SM00912	haemagglutination activity domain
F542_RS10775	SM00912	haemagglutination activity domain
F542_RS10790	SM00460	Transglutaminase/protease-like homologues
