locus-tag	class	description
BAD_RS00005	PF08299	Bacterial dnaA protein helix-turn-helix
BAD_RS00005	PF00308	Bacterial dnaA  protein
BAD_RS00010	PF02767	DNA polymerase III beta subunit, central domain
BAD_RS00010	PF00712	DNA polymerase III beta subunit, N-terminal domain
BAD_RS00010	PF02768	DNA polymerase III beta subunit, C-terminal domain
BAD_RS00015	PF02463	RecF/RecN/SMC N terminal domain
BAD_RS00020	PF05258	Dna[CI] antecedent, DciA
BAD_RS00025	PF01751	Toprim domain
BAD_RS00025	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BAD_RS00025	PF00204	DNA gyrase B
BAD_RS00025	PF00986	DNA gyrase B subunit, carboxyl terminus
BAD_RS00030	PF00521	DNA gyrase/topoisomerase IV, subunit A
BAD_RS00030	PF03989	DNA gyrase C-terminal domain, beta-propeller
BAD_RS00040	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BAD_RS00040	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
BAD_RS00045	PF01741	Large-conductance mechanosensitive channel, MscL
BAD_RS00070	PF01595	Cyclin M transmembrane N-terminal domain
BAD_RS00070	PF03471	Transporter associated domain
BAD_RS00070	PF00571	CBS domain
BAD_RS00075	PF00484	Carbonic anhydrase
BAD_RS00110	PF01471	Putative peptidoglycan binding domain
BAD_RS00110	PF08924	Domain of unknown function (DUF1906)
BAD_RS00130	PF00311	Phosphoenolpyruvate carboxylase
BAD_RS00140	PF00474	Sodium:solute symporter family
BAD_RS00145	PF00579	tRNA synthetases class I (W and Y)
BAD_RS00160	PF00343	Carbohydrate phosphorylase
BAD_RS00180	PF06781	Cell division protein CrgA
BAD_RS00190	PF04203	Sortase domain
BAD_RS00195	PF00117	Glutamine amidotransferase class-I
BAD_RS00200	PF03793	PASTA domain
BAD_RS00200	PF00069	Protein kinase domain
BAD_RS00205	PF00069	Protein kinase domain
BAD_RS00210	PF00905	Penicillin binding protein transpeptidase domain
BAD_RS00215	PF01098	Cell cycle protein
BAD_RS00225	PF03704	Bacterial transcriptional activator domain
BAD_RS00225	PF00498	FHA domain
BAD_RS00225	PF00486	Transcriptional regulatory protein, C terminal
BAD_RS00235	PF00930	Dipeptidyl peptidase IV (DPP IV) N-terminal region
BAD_RS00235	PF00326	Prolyl oligopeptidase family
BAD_RS00245	PF00196	Bacterial regulatory proteins, luxR family
BAD_RS00245	PF00072	Response regulator receiver domain
BAD_RS00260	PF00011	Hsp20/alpha crystallin family
BAD_RS00285	PF00072	Response regulator receiver domain
BAD_RS00285	PF00196	Bacterial regulatory proteins, luxR family
BAD_RS00290	PF01702	Queuine tRNA-ribosyltransferase
BAD_RS00295	PF13180	PDZ domain
BAD_RS00295	PF17820	PDZ domain
BAD_RS00305	PF00710	Asparaginase, N-terminal
BAD_RS00305	PF17763	Glutaminase/Asparaginase C-terminal domain
BAD_RS00315	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BAD_RS00320	PF01435	Peptidase family M48
BAD_RS00330	PF00892	EamA-like transporter family
BAD_RS00335	PF01061	ABC-2 type transporter
BAD_RS00340	PF01061	ABC-2 type transporter
BAD_RS00345	PF01116	Fructose-bisphosphate aldolase class-II
BAD_RS00350	PF00709	Adenylosuccinate synthetase
BAD_RS00355	PF00654	Voltage gated chloride channel
BAD_RS00360	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
BAD_RS00365	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
BAD_RS00370	PF02653	Branched-chain amino acid transport system / permease component
BAD_RS00380	PF00005	ABC transporter
BAD_RS00380	PF12399	Branched-chain amino acid ATP-binding cassette transporter
BAD_RS00385	PF00005	ABC transporter
BAD_RS00390	PF13458	Periplasmic binding protein
BAD_RS00395	PF13407	Periplasmic binding protein domain
BAD_RS00395	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS00405	PF07286	Protein of unknown function (DUF1445)
BAD_RS00410	PF03746	LamB/YcsF family
BAD_RS00415	PF00128	Alpha amylase, catalytic domain
BAD_RS00415	PF09244	Domain of unknown function (DUF1964)
BAD_RS00425	PF00083	Sugar (and other) transporter
BAD_RS00425	PF07690	Major Facilitator Superfamily
BAD_RS00430	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
BAD_RS00430	PF07991	Acetohydroxy acid isomeroreductase, NADPH-binding domain
BAD_RS00435	PF07991	Acetohydroxy acid isomeroreductase, NADPH-binding domain
BAD_RS00435	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
BAD_RS00445	PF00324	Amino acid permease
BAD_RS00455	PF00999	Sodium/hydrogen exchanger family
BAD_RS00455	PF02080	TrkA-C domain
BAD_RS00455	PF02254	TrkA-N domain
BAD_RS00465	PF00324	Amino acid permease
BAD_RS00470	PF05690	Thiazole biosynthesis protein ThiG
BAD_RS00475	PF00899	ThiF family
BAD_RS00490	PF01047	MarR family
BAD_RS00495	PF00664	ABC transporter transmembrane region
BAD_RS00495	PF00005	ABC transporter
BAD_RS00500	PF00005	ABC transporter
BAD_RS00500	PF00664	ABC transporter transmembrane region
BAD_RS00505	PF00248	Aldo/keto reductase family
BAD_RS00515	PF03239	Iron permease FTR1 family
BAD_RS00520	PF10634	Fe2+ transport protein
BAD_RS00540	PF12704	MacB-like periplasmic core domain
BAD_RS00540	PF00005	ABC transporter
BAD_RS00540	PF02687	FtsX-like permease family
BAD_RS00550	PF00440	Bacterial regulatory proteins, tetR family
BAD_RS00560	PF01061	ABC-2 type transporter
BAD_RS00570	PF00462	Glutaredoxin
BAD_RS00580	PF03577	Peptidase family C69
BAD_RS00585	PF00535	Glycosyl transferase family 2
BAD_RS00590	PF00440	Bacterial regulatory proteins, tetR family
BAD_RS00600	PF00448	SRP54-type protein, GTPase domain
BAD_RS00600	PF02881	SRP54-type protein, helical bundle domain
BAD_RS00605	PF00999	Sodium/hydrogen exchanger family
BAD_RS00610	PF00909	Ammonium Transporter Family
BAD_RS00615	PF00543	Nitrogen regulatory protein P-II
BAD_RS00620	PF01966	HD domain
BAD_RS00620	PF01909	Nucleotidyltransferase domain
BAD_RS00620	PF08335	GlnD PII-uridylyltransferase
BAD_RS00625	PF00772	DnaB-like helicase N terminal domain
BAD_RS00625	PF03796	DnaB-like helicase C terminal domain
BAD_RS00630	PF08245	Mur ligase middle domain
BAD_RS00630	PF08353	Domain of unknown function (DUF1727)
BAD_RS00635	PF07685	CobB/CobQ-like glutamine amidotransferase domain
BAD_RS00645	PF03109	ABC1 family
BAD_RS00660	PF03009	Glycerophosphoryl diester phosphodiesterase family
BAD_RS00675	PF00300	Histidine phosphatase superfamily (branch 1)
BAD_RS00675	PF00293	NUDIX domain
BAD_RS00680	PF13090	Polyphosphate kinase C-terminal domain 2
BAD_RS00680	PF17941	Polyphosphate kinase C-terminal domain 1
BAD_RS00680	PF02503	Polyphosphate kinase middle domain
BAD_RS00680	PF13089	Polyphosphate kinase N-terminal domain
BAD_RS00690	PF00437	Type II/IV secretion system protein
BAD_RS00720	PF00781	Diacylglycerol kinase catalytic domain
BAD_RS00730	PF12169	DNA polymerase III subunits gamma and tau domain III
BAD_RS00735	PF02132	RecR protein
BAD_RS00735	PF13662	Toprim domain
BAD_RS00740	PF13840	ACT domain 
BAD_RS00740	PF00696	Amino acid kinase family
BAD_RS00740	PF01842	ACT domain
BAD_RS00745	PF00696	Amino acid kinase family
BAD_RS00745	PF01842	ACT domain
BAD_RS00745	PF13840	ACT domain 
BAD_RS00750	PF01118	Semialdehyde dehydrogenase, NAD binding domain
BAD_RS00750	PF02774	Semialdehyde dehydrogenase, dimerisation domain
BAD_RS00770	PF08502	LeuA allosteric (dimerisation) domain
BAD_RS00770	PF00682	HMGL-like
BAD_RS00780	PF01695	IstB-like ATP binding protein
BAD_RS00785	PF00665	Integrase core domain
BAD_RS00785	PF02796	Helix-turn-helix domain of resolvase
BAD_RS00795	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS00800	PF05270	Alpha-L-arabinofuranosidase B (ABFB) domain
BAD_RS00800	PF04616	Glycosyl hydrolases family 43
BAD_RS00810	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS00815	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS00820	PF00232	Glycosyl hydrolase family 1
BAD_RS00830	PF00912	Transglycosylase
BAD_RS00830	PF00905	Penicillin binding protein transpeptidase domain
BAD_RS00835	PF01658	Myo-inositol-1-phosphate synthase
BAD_RS00840	PF03275	UDP-galactopyranose mutase
BAD_RS00850	PF01751	Toprim domain
BAD_RS00850	PF13368	Topoisomerase C-terminal repeat
BAD_RS00850	PF01131	DNA topoisomerase
BAD_RS00855	PF02223	Thymidylate kinase
BAD_RS00860	PF12169	DNA polymerase III subunits gamma and tau domain III
BAD_RS00865	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS00870	PF00381	PTS HPr component phosphorylation site
BAD_RS00875	PF00391	PEP-utilising enzyme, mobile domain
BAD_RS00875	PF05524	PEP-utilising enzyme, N-terminal
BAD_RS00875	PF02896	PEP-utilising enzyme, TIM barrel domain
BAD_RS00885	PF03577	Peptidase family C69
BAD_RS00890	PF01268	Formate--tetrahydrofolate ligase
BAD_RS00925	PF00749	tRNA synthetases class I (E and Q), catalytic domain
BAD_RS00950	PF00330	Aconitase family (aconitate hydratase)
BAD_RS00955	PF00694	Aconitase C-terminal domain
BAD_RS00965	PF01180	Dihydroorotate dehydrogenase
BAD_RS00970	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
BAD_RS00980	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
BAD_RS00980	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
BAD_RS00985	PF01820	D-ala D-ala ligase N-terminus
BAD_RS00985	PF07478	D-ala D-ala ligase C-terminus
BAD_RS01005	PF08402	TOBE domain
BAD_RS01005	PF00005	ABC transporter
BAD_RS01030	PF00440	Bacterial regulatory proteins, tetR family
BAD_RS01030	PF14278	Transcriptional regulator C-terminal region
BAD_RS01035	PF00155	Aminotransferase class I and II
BAD_RS01040	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
BAD_RS01040	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
BAD_RS01045	PF02447	GntP family permease
BAD_RS01065	PF11700	Vacuole effluxer Atg22 like
BAD_RS01070	PF00830	Ribosomal L28 family
BAD_RS01075	PF17191	RecG wedge domain
BAD_RS01075	PF00271	Helicase conserved C-terminal domain
BAD_RS01075	PF00270	DEAD/DEAH box helicase
BAD_RS01085	PF01746	tRNA (Guanine-1)-methyltransferase
BAD_RS01090	PF01782	RimM N-terminal domain
BAD_RS01100	PF00886	Ribosomal protein S16
BAD_RS01110	PF00448	SRP54-type protein, GTPase domain
BAD_RS01110	PF02978	Signal peptide binding domain
BAD_RS01110	PF02881	SRP54-type protein, helical bundle domain
BAD_RS01115	PF09190	DALR domain
BAD_RS01115	PF01406	tRNA synthetases class I (C) catalytic domain
BAD_RS01120	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
BAD_RS01120	PF00117	Glutamine amidotransferase class-I
BAD_RS01125	PF00005	ABC transporter
BAD_RS01125	PF12848	ABC transporter
BAD_RS01125	PF16326	ABC transporter C-terminal domain
BAD_RS01145	PF00158	Sigma-54 interaction domain
BAD_RS01145	PF02954	Bacterial regulatory protein, Fis family
BAD_RS01145	PF00072	Response regulator receiver domain
BAD_RS01160	PF10369	Small subunit of acetolactate synthase
BAD_RS01160	PF01842	ACT domain
BAD_RS01165	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BAD_RS01165	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BAD_RS01165	PF00205	Thiamine pyrophosphate enzyme, central domain
BAD_RS01170	PF14622	Ribonuclease-III-like
BAD_RS01170	PF00035	Double-stranded RNA binding motif
BAD_RS01175	PF01783	Ribosomal L32p protein family
BAD_RS01180	PF02620	Large ribosomal RNA subunit accumulation protein YceD
BAD_RS01190	PF01467	Cytidylyltransferase-like
BAD_RS01200	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
BAD_RS01200	PF17767	Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
BAD_RS01205	PF03725	3' exoribonuclease family, domain 2
BAD_RS01205	PF01138	3' exoribonuclease family, domain 1
BAD_RS01210	PF01725	Ham1 family
BAD_RS01230	PF00342	Phosphoglucose isomerase
BAD_RS01240	PF01245	Ribosomal protein L19
BAD_RS01245	PF10502	Signal peptidase, peptidase S26 
BAD_RS01250	PF01351	Ribonuclease HII
BAD_RS01255	PF00005	ABC transporter
BAD_RS01270	PF07687	Peptidase dimerisation domain
BAD_RS01270	PF01546	Peptidase family M20/M25/M40
BAD_RS01275	PF10150	Ribonuclease E/G family
BAD_RS01280	PF00829	Ribosomal prokaryotic L21 protein
BAD_RS01285	PF01016	Ribosomal L27 protein
BAD_RS01290	PF09269	Domain of unknown function (DUF1967)
BAD_RS01290	PF01018	GTP1/OBG
BAD_RS01290	PF01926	50S ribosome-binding GTPase
BAD_RS01295	PF00696	Amino acid kinase family
BAD_RS01295	PF01472	PUA domain
BAD_RS01300	PF00155	Aminotransferase class I and II
BAD_RS01310	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
BAD_RS01315	PF02357	Transcription termination factor nusG
BAD_RS01320	PF03946	Ribosomal protein L11, N-terminal domain
BAD_RS01320	PF00298	Ribosomal protein L11, RNA binding domain
BAD_RS01325	PF00687	Ribosomal protein L1p/L10e family
BAD_RS01330	PF13556	PucR C-terminal helix-turn-helix domain
BAD_RS01330	PF17853	GGDEF-like domain
BAD_RS01345	PF02632	BioY family
BAD_RS01350	PF00289	Biotin carboxylase, N-terminal domain
BAD_RS01350	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BAD_RS01350	PF02785	Biotin carboxylase C-terminal domain
BAD_RS01350	PF00364	Biotin-requiring enzyme
BAD_RS01355	PF01039	Carboxyl transferase domain
BAD_RS01365	PF01648	4'-phosphopantetheinyl transferase superfamily
BAD_RS01380	PF00312	Ribosomal protein S15
BAD_RS01385	PF00575	S1 RNA binding domain
BAD_RS01385	PF01138	3' exoribonuclease family, domain 1
BAD_RS01385	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
BAD_RS01385	PF00013	KH domain
BAD_RS01390	PF04011	LemA family
BAD_RS01405	PF00248	Aldo/keto reductase family
BAD_RS01415	PF00155	Aminotransferase class I and II
BAD_RS01415	PF00392	Bacterial regulatory proteins, gntR family
BAD_RS01420	PF16325	Peptidase family U32 C-terminal domain
BAD_RS01420	PF01136	Peptidase family U32
BAD_RS01425	PF02578	Multi-copper polyphenol oxidoreductase laccase
BAD_RS01430	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
BAD_RS01435	PF01470	Pyroglutamyl peptidase
BAD_RS01445	PF03051	Peptidase C1-like family
BAD_RS01450	PF00793	DAHP synthetase I family
BAD_RS01455	PF00793	DAHP synthetase I family
BAD_RS01460	PF01048	Phosphorylase superfamily
BAD_RS01465	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BAD_RS01465	PF00512	His Kinase A (phospho-acceptor) domain
BAD_RS01470	PF00072	Response regulator receiver domain
BAD_RS01470	PF00486	Transcriptional regulatory protein, C terminal
BAD_RS01475	PF12849	PBP superfamily domain
BAD_RS01480	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS01485	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS01490	PF00005	ABC transporter
BAD_RS01500	PF00860	Permease family
BAD_RS01505	PF00466	Ribosomal protein L10
BAD_RS01510	PF16320	Ribosomal protein L7/L12 dimerisation domain
BAD_RS01510	PF00542	Ribosomal protein L7/L12 C-terminal domain
BAD_RS01540	PF01812	5-formyltetrahydrofolate cyclo-ligase family
BAD_RS01555	PF00166	Chaperonin 10 Kd subunit
BAD_RS01575	PF00471	Ribosomal protein L33
BAD_RS01580	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
BAD_RS01580	PF01565	FAD binding domain 
BAD_RS01585	PF13520	Amino acid permease
BAD_RS01590	PF00037	4Fe-4S binding domain
BAD_RS01595	PF00155	Aminotransferase class I and II
BAD_RS01610	PF01270	Glycosyl hydrolases family 8
BAD_RS01615	PF17851	Beta xylosidase C-terminal Concanavalin A-like domain 
BAD_RS01615	PF04616	Glycosyl hydrolases family 43
BAD_RS01620	PF00135	Carboxylesterase family
BAD_RS01630	PF11798	IMS family HHH motif
BAD_RS01630	PF11799	impB/mucB/samB family C-terminal domain
BAD_RS01630	PF00817	impB/mucB/samB family
BAD_RS01640	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
BAD_RS01640	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BAD_RS01645	PF09186	Domain of unknown function (DUF1949)
BAD_RS01645	PF01205	Uncharacterized protein family UPF0029
BAD_RS01655	PF02446	4-alpha-glucanotransferase
BAD_RS01660	PF00572	Ribosomal protein L13
BAD_RS01665	PF00380	Ribosomal protein S9/S16
BAD_RS01675	PF08240	Alcohol dehydrogenase GroES-like domain
BAD_RS01675	PF00107	Zinc-binding dehydrogenase
BAD_RS01690	PF07690	Major Facilitator Superfamily
BAD_RS01695	PF00107	Zinc-binding dehydrogenase
BAD_RS01695	PF08240	Alcohol dehydrogenase GroES-like domain
BAD_RS01705	PF00465	Iron-containing alcohol dehydrogenase 
BAD_RS01705	PF00171	Aldehyde dehydrogenase family
BAD_RS01710	PF00338	Ribosomal protein S10p/S20e
BAD_RS01715	PF00297	Ribosomal protein L3
BAD_RS01720	PF00573	Ribosomal protein L4/L1 family
BAD_RS01725	PF00276	Ribosomal protein L23
BAD_RS01730	PF00181	Ribosomal Proteins L2, RNA binding domain
BAD_RS01730	PF03947	Ribosomal Proteins L2, C-terminal domain
BAD_RS01735	PF00203	Ribosomal protein S19
BAD_RS01740	PF00237	Ribosomal protein L22p/L17e
BAD_RS01745	PF07650	KH domain
BAD_RS01745	PF00189	Ribosomal protein S3, C-terminal domain
BAD_RS01750	PF00252	Ribosomal protein L16p/L10e
BAD_RS01755	PF00831	Ribosomal L29 protein
BAD_RS01760	PF00366	Ribosomal protein S17
BAD_RS01765	PF00238	Ribosomal protein L14p/L23e
BAD_RS01770	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24
BAD_RS01770	PF00467	KOW motif
BAD_RS01775	PF00281	Ribosomal protein L5
BAD_RS01775	PF00673	ribosomal L5P family C-terminus
BAD_RS01780	PF00253	Ribosomal protein S14p/S29e
BAD_RS01785	PF00410	Ribosomal protein S8
BAD_RS01790	PF00347	Ribosomal protein L6
BAD_RS01795	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
BAD_RS01800	PF00333	Ribosomal protein S5, N-terminal domain
BAD_RS01800	PF03719	Ribosomal protein S5, C-terminal domain
BAD_RS01805	PF00327	Ribosomal protein L30p/L7e
BAD_RS01810	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
BAD_RS01815	PF00344	SecY translocase
BAD_RS01825	PF01176	Translation initiation factor 1A / IF-1
BAD_RS01830	PF00444	Ribosomal protein L36
BAD_RS01835	PF00416	Ribosomal protein S13/S18
BAD_RS01840	PF00411	Ribosomal protein S11
BAD_RS01845	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
BAD_RS01845	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
BAD_RS01845	PF01000	RNA polymerase Rpb3/RpoA insert domain
BAD_RS01850	PF01196	Ribosomal protein L17
BAD_RS01855	PF01416	tRNA pseudouridine synthase
BAD_RS01860	PF14403	Circularly permuted ATP-grasp type 2 
BAD_RS01880	PF08529	NusA N-terminal domain
BAD_RS01880	PF13184	NusA-like KH domain
BAD_RS01885	PF04760	Translation initiation factor IF-2, N-terminal region
BAD_RS01885	PF11987	Translation-initiation factor 2
BAD_RS01885	PF00009	Elongation factor Tu GTP binding domain
BAD_RS01890	PF02033	Ribosome-binding factor A
BAD_RS01895	PF09142	tRNA Pseudouridine synthase II, C terminal
BAD_RS01895	PF16198	tRNA pseudouridylate synthase B C-terminal domain
BAD_RS01895	PF01509	TruB family pseudouridylate synthase (N terminal domain)
BAD_RS01900	PF06574	FAD synthetase
BAD_RS01900	PF01687	Riboflavin kinase
BAD_RS01905	PF18073	Rubredoxin metal binding domain
BAD_RS01915	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
BAD_RS01920	PF00075	RNase H
BAD_RS01925	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BAD_RS01925	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
BAD_RS01925	PF17203	Single cache domain 3
BAD_RS01925	PF00989	PAS fold
BAD_RS01935	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
BAD_RS01935	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
BAD_RS01935	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
BAD_RS01935	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
BAD_RS01940	PF02378	Phosphotransferase system, EIIC 
BAD_RS01940	PF00367	phosphotransferase system, EIIB
BAD_RS01940	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
BAD_RS01945	PF00874	PRD domain
BAD_RS01945	PF03123	CAT RNA binding domain
BAD_RS01950	PF00781	Diacylglycerol kinase catalytic domain
BAD_RS01950	PF02142	MGS-like domain
BAD_RS01955	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BAD_RS01955	PF02403	Seryl-tRNA synthetase N-terminal domain
BAD_RS01965	PF00196	Bacterial regulatory proteins, luxR family
BAD_RS01965	PF00072	Response regulator receiver domain
BAD_RS01990	PF07690	Major Facilitator Superfamily
BAD_RS02000	PF00152	tRNA synthetases class II (D, K and N) 
BAD_RS02000	PF01336	OB-fold nucleic acid binding domain
BAD_RS02005	PF01040	UbiA prenyltransferase family
BAD_RS02010	PF00300	Histidine phosphatase superfamily (branch 1)
BAD_RS02015	PF06100	MCRA family
BAD_RS02020	PF01895	PhoU domain
BAD_RS02025	PF00512	His Kinase A (phospho-acceptor) domain
BAD_RS02025	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BAD_RS02035	PF00266	Aminotransferase class-V
BAD_RS02040	PF05257	CHAP domain
BAD_RS02040	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
BAD_RS02045	PF00877	NlpC/P60 family
BAD_RS02050	PF00582	Universal stress protein family
BAD_RS02055	PF02566	OsmC-like protein
BAD_RS02060	PF00303	Thymidylate synthase
BAD_RS02065	PF00186	Dihydrofolate reductase
BAD_RS02070	PF01451	Low molecular weight phosphotyrosine protein phosphatase
BAD_RS02080	PF16363	GDP-mannose 4,6 dehydratase
BAD_RS02085	PF02390	Putative methyltransferase 
BAD_RS02145	PF00498	FHA domain
BAD_RS02145	PF00563	EAL domain
BAD_RS02145	PF00990	Diguanylate cyclase, GGDEF domain
BAD_RS02150	PF00465	Iron-containing alcohol dehydrogenase 
BAD_RS02155	PF00535	Glycosyl transferase family 2
BAD_RS02165	PF00535	Glycosyl transferase family 2
BAD_RS02175	PF00156	Phosphoribosyl transferase domain
BAD_RS02180	PF00004	ATPase family associated with various cellular activities (AAA)
BAD_RS02180	PF17862	AAA+ lid domain
BAD_RS02180	PF01434	Peptidase family M41
BAD_RS02185	PF01227	GTP cyclohydrolase I
BAD_RS02190	PF00809	Pterin binding enzyme
BAD_RS02195	PF02152	Dihydroneopterin aldolase
BAD_RS02210	PF00005	ABC transporter
BAD_RS02210	PF12848	ABC transporter
BAD_RS02215	PF01327	Polypeptide deformylase
BAD_RS02235	PF01053	Cys/Met metabolism PLP-dependent enzyme
BAD_RS02240	PF01261	Xylose isomerase-like TIM barrel
BAD_RS02245	PF04616	Glycosyl hydrolases family 43
BAD_RS02245	PF17851	Beta xylosidase C-terminal Concanavalin A-like domain 
BAD_RS02250	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS02260	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS02265	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS02270	PF17851	Beta xylosidase C-terminal Concanavalin A-like domain 
BAD_RS02270	PF04616	Glycosyl hydrolases family 43
BAD_RS02290	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
BAD_RS02290	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
BAD_RS02295	PF00480	ROK family
BAD_RS02310	PF00480	ROK family
BAD_RS02315	PF13305	Tetracyclin repressor-like, C-terminal domain
BAD_RS02315	PF00440	Bacterial regulatory proteins, tetR family
BAD_RS02325	PF06165	Glycosyltransferase family 36
BAD_RS02325	PF17167	Glycosyl hydrolase 36 superfamily, catalytic domain
BAD_RS02330	PF06165	Glycosyltransferase family 36
BAD_RS02330	PF17167	Glycosyl hydrolase 36 superfamily, catalytic domain
BAD_RS02340	PF01197	Ribosomal protein L31
BAD_RS02345	PF00472	RF-1 domain
BAD_RS02345	PF03462	PCRF domain
BAD_RS02350	PF17827	PrmC N-terminal domain
BAD_RS02355	PF13458	Periplasmic binding protein
BAD_RS02360	PF02653	Branched-chain amino acid transport system / permease component
BAD_RS02365	PF11862	Domain of unknown function (DUF3382)
BAD_RS02365	PF02653	Branched-chain amino acid transport system / permease component
BAD_RS02370	PF12399	Branched-chain amino acid ATP-binding cassette transporter
BAD_RS02370	PF00005	ABC transporter
BAD_RS02375	PF00005	ABC transporter
BAD_RS02380	PF01300	Telomere recombination
BAD_RS02385	PF00953	Glycosyl transferase family 4
BAD_RS02390	PF00571	CBS domain
BAD_RS02390	PF00478	IMP dehydrogenase / GMP reductase domain
BAD_RS02395	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS02400	PF00128	Alpha amylase, catalytic domain
BAD_RS02405	PF00929	Exonuclease
BAD_RS02415	PF14493	Helix-turn-helix domain
BAD_RS02415	PF05970	PIF1-like helicase
BAD_RS02425	PF03129	Anticodon binding domain
BAD_RS02425	PF04073	Aminoacyl-tRNA editing domain
BAD_RS02425	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BAD_RS02435	PF01431	Peptidase family M13
BAD_RS02435	PF05649	Peptidase family M13
BAD_RS02440	PF00557	Metallopeptidase family M24
BAD_RS02445	PF00285	Citrate synthase, C-terminal domain
BAD_RS02450	PF14789	Tetrahydrodipicolinate N-succinyltransferase middle
BAD_RS02450	PF14602	Hexapeptide repeat of succinyl-transferase
BAD_RS02455	PF02590	Predicted SPOUT methyltransferase
BAD_RS02460	PF03462	PCRF domain
BAD_RS02460	PF00472	RF-1 domain
BAD_RS02465	PF00005	ABC transporter
BAD_RS02470	PF18075	FtsX extracellular domain
BAD_RS02470	PF02687	FtsX-like permease family
BAD_RS02475	PF05257	CHAP domain
BAD_RS02475	PF01476	LysM domain
BAD_RS02480	PF01668	SmpB protein
BAD_RS02485	PF00497	Bacterial extracellular solute-binding proteins, family 3
BAD_RS02495	PF00497	Bacterial extracellular solute-binding proteins, family 3
BAD_RS02500	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS02505	PF00005	ABC transporter
BAD_RS02510	PF01380	SIS domain
BAD_RS02515	PF00849	RNA pseudouridylate synthase
BAD_RS02520	PF00375	Sodium:dicarboxylate symporter family
BAD_RS02530	PF03309	Type III pantothenate kinase
BAD_RS02535	PF04127	DNA / pantothenate metabolism flavoprotein
BAD_RS02535	PF02441	Flavoprotein
BAD_RS02540	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BAD_RS02545	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS02550	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS02550	PF12911	N-terminal TM domain of oligopeptide transport permease C
BAD_RS02555	PF00005	ABC transporter
BAD_RS02555	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BAD_RS02560	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BAD_RS02560	PF00005	ABC transporter
BAD_RS02575	PF00005	ABC transporter
BAD_RS02585	PF00392	Bacterial regulatory proteins, gntR family
BAD_RS02585	PF07729	FCD domain
BAD_RS02590	PF00005	ABC transporter
BAD_RS02590	PF13732	Domain of unknown function (DUF4162)
BAD_RS02600	PF00571	CBS domain
BAD_RS02600	PF00291	Pyridoxal-phosphate dependent enzyme
BAD_RS02605	PF01053	Cys/Met metabolism PLP-dependent enzyme
BAD_RS02610	PF16124	RecQ zinc-binding
BAD_RS02610	PF00570	HRDC domain
BAD_RS02610	PF09382	RQC domain
BAD_RS02610	PF00271	Helicase conserved C-terminal domain
BAD_RS02610	PF00270	DEAD/DEAH box helicase
BAD_RS02615	PF02664	S-Ribosylhomocysteinase (LuxS)
BAD_RS02625	PF13520	Amino acid permease
BAD_RS02630	PF01168	Alanine racemase, N-terminal domain
BAD_RS02630	PF00842	Alanine racemase, C-terminal domain
BAD_RS02635	PF01966	HD domain
BAD_RS02635	PF13286	Phosphohydrolase-associated domain
BAD_RS02640	PF08278	DNA primase DnaG DnaB-binding 
BAD_RS02640	PF01807	CHC2 zinc finger
BAD_RS02640	PF10410	DnaB-helicase binding domain of primase
BAD_RS02640	PF13662	Toprim domain
BAD_RS02640	PF08275	DNA primase catalytic core, N-terminal domain
BAD_RS02660	PF00679	Elongation factor G C-terminus
BAD_RS02660	PF00009	Elongation factor Tu GTP binding domain
BAD_RS02660	PF03764	Elongation factor G, domain IV
BAD_RS02660	PF14492	Elongation Factor G, domain II
BAD_RS02685	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS02690	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS02695	PF00005	ABC transporter
BAD_RS02700	PF00497	Bacterial extracellular solute-binding proteins, family 3
BAD_RS02705	PF01053	Cys/Met metabolism PLP-dependent enzyme
BAD_RS02710	PF01145	SPFH domain / Band 7 family
BAD_RS02720	PF00005	ABC transporter
BAD_RS02730	PF12704	MacB-like periplasmic core domain
BAD_RS02730	PF02687	FtsX-like permease family
BAD_RS02735	PF02779	Transketolase, pyrimidine binding domain
BAD_RS02735	PF02780	Transketolase, C-terminal domain
BAD_RS02735	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
BAD_RS02740	PF00107	Zinc-binding dehydrogenase
BAD_RS02740	PF08240	Alcohol dehydrogenase GroES-like domain
BAD_RS02745	PF00731	AIR carboxylase
BAD_RS02750	PF02222	ATP-grasp domain
BAD_RS02750	PF17769	Phosphoribosylaminoimidazole carboxylase C-terminal domain
BAD_RS02760	PF00884	Sulfatase
BAD_RS02765	PF02844	Phosphoribosylglycinamide synthetase, N domain
BAD_RS02765	PF02843	Phosphoribosylglycinamide synthetase, C domain
BAD_RS02765	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
BAD_RS02770	PF02769	AIR synthase related protein, C-terminal domain
BAD_RS02770	PF00586	AIR synthase related protein, N-terminal domain
BAD_RS02775	PF13537	Glutamine amidotransferase domain
BAD_RS02775	PF00156	Phosphoribosyl transferase domain
BAD_RS02780	PF00817	impB/mucB/samB family
BAD_RS02780	PF11798	IMS family HHH motif
BAD_RS02780	PF11799	impB/mucB/samB family C-terminal domain
BAD_RS02790	PF18072	Formylglycinamide ribonucleotide amidotransferase linker domain
BAD_RS02790	PF02769	AIR synthase related protein, C-terminal domain
BAD_RS02790	PF00586	AIR synthase related protein, N-terminal domain
BAD_RS02795	PF01259	SAICAR synthetase
BAD_RS02800	PF02222	ATP-grasp domain
BAD_RS02820	PF01758	Sodium Bile acid symporter family
BAD_RS02825	PF00164	Ribosomal protein S12/S23
BAD_RS02830	PF00177	Ribosomal protein S7p/S5e
BAD_RS02835	PF03764	Elongation factor G, domain IV
BAD_RS02835	PF03144	Elongation factor Tu domain 2
BAD_RS02835	PF00679	Elongation factor G C-terminus
BAD_RS02835	PF14492	Elongation Factor G, domain II
BAD_RS02835	PF00009	Elongation factor Tu GTP binding domain
BAD_RS02840	PF03143	Elongation factor Tu C-terminal domain
BAD_RS02840	PF00009	Elongation factor Tu GTP binding domain
BAD_RS02840	PF03144	Elongation factor Tu domain 2
BAD_RS02845	PF01132	Elongation factor P (EF-P) OB domain
BAD_RS02845	PF08207	Elongation factor P (EF-P) KOW-like domain
BAD_RS02845	PF09285	Elongation factor P, C-terminal
BAD_RS02850	PF01029	NusB family
BAD_RS02855	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
BAD_RS02855	PF00117	Glutamine amidotransferase class-I
BAD_RS02860	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BAD_RS02860	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BAD_RS02860	PF02142	MGS-like domain
BAD_RS02865	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
BAD_RS02870	PF00625	Guanylate kinase
BAD_RS02875	PF00920	Dehydratase family
BAD_RS02880	PF01192	RNA polymerase Rpb6 
BAD_RS02885	PF00438	S-adenosylmethionine synthetase, N-terminal domain
BAD_RS02885	PF02773	S-adenosylmethionine synthetase, C-terminal domain
BAD_RS02885	PF02772	S-adenosylmethionine synthetase, central domain
BAD_RS02890	PF17764	3′ DNA-binding domain (3′BD)
BAD_RS02895	PF13419	Haloacid dehalogenase-like hydrolase
BAD_RS02900	PF00551	Formyl transferase
BAD_RS02900	PF02911	Formyl transferase, C-terminal domain
BAD_RS02910	PF00004	ATPase family associated with various cellular activities (AAA)
BAD_RS02910	PF17758	Proteasomal ATPase OB N-terminal domain
BAD_RS02910	PF16450	Proteasomal ATPase OB C-terminal domain
BAD_RS02915	PF03136	Pup-ligase protein
BAD_RS02920	PF00459	Inositol monophosphatase family
BAD_RS02925	PF05639	Pup-like protein
BAD_RS02930	PF03136	Pup-ligase protein
BAD_RS02945	PF00216	Bacterial DNA-binding protein
BAD_RS02955	PF00206	Lyase
BAD_RS02955	PF08328	Adenylosuccinate lyase C-terminal
BAD_RS02995	PF07726	ATPase family associated with various cellular activities (AAA)
BAD_RS02995	PF17863	AAA lid domain
BAD_RS03000	PF03167	Uracil DNA glycosylase superfamily
BAD_RS03010	PF00118	TCP-1/cpn60 chaperonin family
BAD_RS03025	PF00486	Transcriptional regulatory protein, C terminal
BAD_RS03025	PF00072	Response regulator receiver domain
BAD_RS03030	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BAD_RS03030	PF00672	HAMP domain
BAD_RS03030	PF00512	His Kinase A (phospho-acceptor) domain
BAD_RS03035	PF00313	'Cold-shock' DNA-binding domain
BAD_RS03040	PF11228	Protein of unknown function (DUF3027)
BAD_RS03045	PF00582	Universal stress protein family
BAD_RS03050	PF02861	Clp amino terminal domain, pathogenicity island component
BAD_RS03050	PF00004	ATPase family associated with various cellular activities (AAA)
BAD_RS03050	PF07724	AAA domain (Cdc48 subfamily)
BAD_RS03050	PF17871	AAA lid domain
BAD_RS03050	PF10431	C-terminal, D2-small domain, of ClpB protein 
BAD_RS03055	PF03993	Domain of Unknown Function (DUF349)
BAD_RS03060	PF13393	Histidyl-tRNA synthetase
BAD_RS03060	PF03129	Anticodon binding domain
BAD_RS03065	PF01336	OB-fold nucleic acid binding domain
BAD_RS03065	PF02938	GAD domain
BAD_RS03065	PF00152	tRNA synthetases class II (D, K and N) 
BAD_RS03070	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS03075	PF00005	ABC transporter
BAD_RS03080	PF00005	ABC transporter
BAD_RS03085	PF00497	Bacterial extracellular solute-binding proteins, family 3
BAD_RS03090	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS03095	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS03100	PF03976	Polyphosphate kinase 2 (PPK2)
BAD_RS03105	PF00271	Helicase conserved C-terminal domain
BAD_RS03105	PF08148	DSHCT (NUC185) domain
BAD_RS03105	PF00270	DEAD/DEAH box helicase
BAD_RS03110	PF16193	AAA C-terminal domain
BAD_RS03110	PF00004	ATPase family associated with various cellular activities (AAA)
BAD_RS03110	PF12002	MgsA AAA+ ATPase C terminal
BAD_RS03115	PF07690	Major Facilitator Superfamily
BAD_RS03120	PF00574	Clp protease
BAD_RS03125	PF00574	Clp protease
BAD_RS03130	PF06689	ClpX C4-type zinc finger
BAD_RS03130	PF07724	AAA domain (Cdc48 subfamily)
BAD_RS03130	PF10431	C-terminal, D2-small domain, of ClpB protein 
BAD_RS03145	PF06965	Na+/H+ antiporter 1
BAD_RS03155	PF13085	2Fe-2S iron-sulfur cluster binding domain
BAD_RS03160	PF02910	Fumarate reductase flavoprotein C-term
BAD_RS03160	PF00890	FAD binding domain
BAD_RS03165	PF17782	DprA winged helix domain
BAD_RS03165	PF02481	DNA recombination-mediator protein A
BAD_RS03170	PF13335	Magnesium chelatase, subunit ChlI C-terminal
BAD_RS03170	PF01078	Magnesium chelatase, subunit ChlI
BAD_RS03175	PF02021	Uncharacterised protein family UPF0102
BAD_RS03185	PF01053	Cys/Met metabolism PLP-dependent enzyme
BAD_RS03195	PF00005	ABC transporter
BAD_RS03200	PF02361	Cobalt transport protein
BAD_RS03210	PF00005	ABC transporter
BAD_RS03215	PF00005	ABC transporter
BAD_RS03215	PF02687	FtsX-like permease family
BAD_RS03215	PF12704	MacB-like periplasmic core domain
BAD_RS03220	PF00196	Bacterial regulatory proteins, luxR family
BAD_RS03220	PF00072	Response regulator receiver domain
BAD_RS03225	PF07730	Histidine kinase
BAD_RS03230	PF00561	alpha/beta hydrolase fold
BAD_RS03235	PF03807	NADP oxidoreductase coenzyme F420-dependent
BAD_RS03235	PF14748	Pyrroline-5-carboxylate reductase dimerisation
BAD_RS03240	PF01926	50S ribosome-binding GTPase
BAD_RS03240	PF06071	Protein of unknown function (DUF933)
BAD_RS03250	PF07670	Nucleoside recognition
BAD_RS03250	PF07664	Ferrous iron transport protein B C terminus
BAD_RS03250	PF04023	FeoA domain
BAD_RS03250	PF17910	FeoB cytosolic helical domain
BAD_RS03250	PF02421	Ferrous iron transport protein B
BAD_RS03270	PF03601	Conserved hypothetical protein 698
BAD_RS03290	PF01925	Sulfite exporter TauE/SafE
BAD_RS03295	PF12833	Helix-turn-helix domain
BAD_RS03295	PF02311	AraC-like ligand binding domain
BAD_RS03305	PF00860	Permease family
BAD_RS03310	PF00106	short chain dehydrogenase
BAD_RS03315	PF00271	Helicase conserved C-terminal domain
BAD_RS03315	PF00270	DEAD/DEAH box helicase
BAD_RS03320	PF03649	Uncharacterised protein family (UPF0014)
BAD_RS03325	PF00005	ABC transporter
BAD_RS03335	PF09924	Uncharacterised conserved protein (DUF2156)
BAD_RS03340	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
BAD_RS03340	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
BAD_RS03345	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
BAD_RS03355	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
BAD_RS03355	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
BAD_RS03370	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
BAD_RS03370	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
BAD_RS03380	PF00155	Aminotransferase class I and II
BAD_RS03390	PF02525	Flavodoxin-like fold
BAD_RS03395	PF03591	AzlC protein
BAD_RS03400	PF05437	Branched-chain amino acid transport protein (AzlD)
BAD_RS03405	PF00933	Glycosyl hydrolase family 3 N terminal domain
BAD_RS03410	PF03699	Uncharacterised protein family (UPF0182)
BAD_RS03420	PF01195	Peptidyl-tRNA hydrolase
BAD_RS03425	PF00270	DEAD/DEAH box helicase
BAD_RS03425	PF02559	CarD-like/TRCF domain
BAD_RS03425	PF00271	Helicase conserved C-terminal domain
BAD_RS03425	PF03461	TRCF domain
BAD_RS03425	PF17757	UvrB interaction domain
BAD_RS03430	PF00113	Enolase, C-terminal TIM barrel domain
BAD_RS03430	PF03952	Enolase, N-terminal domain
BAD_RS03445	PF02541	Ppx/GppA phosphatase family
BAD_RS03460	PF03313	Serine dehydratase alpha chain
BAD_RS03460	PF03315	Serine dehydratase beta chain
BAD_RS03465	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
BAD_RS03470	PF01272	Transcription elongation factor, GreA/GreB, C-term
BAD_RS03470	PF03449	Transcription elongation factor, N-terminal
BAD_RS03475	PF03006	Haemolysin-III related
BAD_RS03480	PF07568	Histidine kinase
BAD_RS03480	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BAD_RS03480	PF12282	Signal transduction histidine kinase
BAD_RS03485	PF02467	Transcription factor WhiB
BAD_RS03490	PF12538	DNA transporter 
BAD_RS03490	PF01580	FtsK/SpoIIIE family
BAD_RS03495	PF03816	Cell envelope-related transcriptional attenuator domain
BAD_RS03495	PF13399	LytR cell envelope-related transcriptional attenuator
BAD_RS03505	PF03816	Cell envelope-related transcriptional attenuator domain
BAD_RS03510	PF02467	Transcription factor WhiB
BAD_RS03540	PF00672	HAMP domain
BAD_RS03540	PF00512	His Kinase A (phospho-acceptor) domain
BAD_RS03540	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BAD_RS03545	PF00072	Response regulator receiver domain
BAD_RS03545	PF00486	Transcriptional regulatory protein, C terminal
BAD_RS03550	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
BAD_RS03550	PF02806	Alpha amylase, C-terminal all-beta domain
BAD_RS03550	PF00128	Alpha amylase, catalytic domain
BAD_RS03555	PF02559	CarD-like/TRCF domain
BAD_RS03560	PF02542	YgbB family
BAD_RS03565	PF00950	ABC 3 transport family
BAD_RS03570	PF00005	ABC transporter
BAD_RS03575	PF01297	Zinc-uptake complex component A periplasmic
BAD_RS03580	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
BAD_RS03580	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
BAD_RS03585	PF00575	S1 RNA binding domain
BAD_RS03590	PF01121	Dephospho-CoA kinase
BAD_RS03595	PF00271	Helicase conserved C-terminal domain
BAD_RS03595	PF04851	Type III restriction enzyme, res subunit
BAD_RS03595	PF12344	Ultra-violet resistance protein B
BAD_RS03595	PF17757	UvrB interaction domain
BAD_RS03595	PF02151	UvrB/uvrC motif
BAD_RS03600	PF03741	Integral membrane protein TerC family
BAD_RS03605	PF00224	Pyruvate kinase, barrel domain
BAD_RS03605	PF02887	Pyruvate kinase, alpha/beta domain
BAD_RS03615	PF00072	Response regulator receiver domain
BAD_RS03615	PF03861	ANTAR domain
BAD_RS03620	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
BAD_RS03620	PF00476	DNA polymerase family A
BAD_RS03620	PF01367	5'-3' exonuclease, C-terminal SAM fold
BAD_RS03625	PF01784	NIF3 (NGG1p interacting factor 3)
BAD_RS03630	PF00293	NUDIX domain
BAD_RS03635	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
BAD_RS03635	PF00128	Alpha amylase, catalytic domain
BAD_RS03655	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
BAD_RS03660	PF02540	NAD synthase
BAD_RS03660	PF00958	GMP synthase C terminal domain
BAD_RS03660	PF00117	Glutamine amidotransferase class-I
BAD_RS03665	PF09363	XFP C-terminal domain
BAD_RS03665	PF09364	XFP N-terminal domain
BAD_RS03665	PF03894	D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
BAD_RS03670	PF01515	Phosphate acetyl/butaryl transferase
BAD_RS03670	PF07085	DRTGG domain
BAD_RS03675	PF00871	Acetokinase family
BAD_RS03680	PF01757	Acyltransferase family
BAD_RS03685	PF00860	Permease family
BAD_RS03690	PF00156	Phosphoribosyl transferase domain
BAD_RS03695	PF13361	UvrD-like helicase C-terminal domain
BAD_RS03695	PF00580	UvrD/REP helicase N-terminal domain
BAD_RS03710	PF00005	ABC transporter
BAD_RS03715	PF00163	Ribosomal protein S4/S9 N-terminal domain
BAD_RS03715	PF01479	S4 domain
BAD_RS03720	PF00300	Histidine phosphatase superfamily (branch 1)
BAD_RS03735	PF02272	DHHA1 domain
BAD_RS03735	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BAD_RS03735	PF01411	tRNA synthetases class II (A)
BAD_RS03740	PF03652	Holliday junction resolvase
BAD_RS03755	PF01264	Chorismate synthase
BAD_RS03760	PF01202	Shikimate kinase
BAD_RS03760	PF01761	3-dehydroquinate synthase
BAD_RS03765	PF01220	Dehydroquinase class II
BAD_RS03775	PF00128	Alpha amylase, catalytic domain
BAD_RS03775	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
BAD_RS03775	PF17999	Pullulanase N1-terminal domain
BAD_RS03780	PF06418	CTP synthase N-terminus
BAD_RS03780	PF00117	Glutamine amidotransferase class-I
BAD_RS03785	PF01458	Uncharacterized protein family (UPF0051)
BAD_RS03790	PF01458	Uncharacterized protein family (UPF0051)
BAD_RS03795	PF00005	ABC transporter
BAD_RS03800	PF00266	Aminotransferase class-V
BAD_RS03805	PF01592	NifU-like N terminal domain
BAD_RS03810	PF01883	Iron-sulfur cluster assembly protein
BAD_RS03815	PF00483	Nucleotidyl transferase
BAD_RS03820	PF00588	SpoU rRNA Methylase family
BAD_RS03830	PF04452	RNA methyltransferase
BAD_RS03835	PF01230	HIT domain
BAD_RS03840	PF02562	PhoH-like protein
BAD_RS03845	PF02130	Uncharacterized protein family UPF0054
BAD_RS03850	PF00571	CBS domain
BAD_RS03850	PF03471	Transporter associated domain
BAD_RS03850	PF01595	Cyclin M transmembrane N-terminal domain
BAD_RS03855	PF01926	50S ribosome-binding GTPase
BAD_RS03855	PF07650	KH domain
BAD_RS03860	PF00501	AMP-binding enzyme
BAD_RS03865	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
BAD_RS03865	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
BAD_RS03870	PF12769	4TM region of pyridine nucleotide transhydrogenase, mitoch
BAD_RS03875	PF02233	NAD(P) transhydrogenase beta subunit
BAD_RS03885	PF01554	MatE
BAD_RS03895	PF00248	Aldo/keto reductase family
BAD_RS03910	PF00083	Sugar (and other) transporter
BAD_RS03915	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
BAD_RS03920	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
BAD_RS03935	PF00005	ABC transporter
BAD_RS03945	PF17760	UvrA interaction domain
BAD_RS03945	PF00005	ABC transporter
BAD_RS03945	PF17755	UvrA DNA-binding domain
BAD_RS03960	PF14693	Ribosomal protein TL5, C-terminal domain
BAD_RS03960	PF01386	Ribosomal L25p family
BAD_RS03965	PF01063	Amino-transferase class IV
BAD_RS03970	PF03458	UPF0126 domain
BAD_RS03975	PF01649	Ribosomal protein S20
BAD_RS03980	PF00679	Elongation factor G C-terminus
BAD_RS03980	PF00009	Elongation factor Tu GTP binding domain
BAD_RS03980	PF03144	Elongation factor Tu domain 2
BAD_RS03980	PF06421	GTP-binding protein LepA C-terminus
BAD_RS03985	PF04055	Radical SAM superfamily
BAD_RS03990	PF04898	Glutamate synthase central domain
BAD_RS03990	PF01645	Conserved region in glutamate synthase
BAD_RS03990	PF00310	Glutamine amidotransferases class-II
BAD_RS03990	PF01493	GXGXG motif
BAD_RS03995	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
BAD_RS03995	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BAD_RS04005	PF13439	Glycosyltransferase Family 4
BAD_RS04005	PF00534	Glycosyl transferases group 1
BAD_RS04010	PF00005	ABC transporter
BAD_RS04015	PF08704	tRNA methyltransferase complex GCD14 subunit
BAD_RS04030	PF08267	Cobalamin-independent synthase, N-terminal domain
BAD_RS04030	PF01717	Cobalamin-independent synthase, Catalytic domain
BAD_RS04035	PF02219	Methylenetetrahydrofolate reductase
BAD_RS04040	PF08335	GlnD PII-uridylyltransferase
BAD_RS04040	PF03710	Glutamate-ammonia ligase adenylyltransferase
BAD_RS04045	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
BAD_RS04045	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
BAD_RS04050	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
BAD_RS04050	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
BAD_RS04055	PF01979	Amidohydrolase family
BAD_RS04060	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
BAD_RS04065	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
BAD_RS04070	PF01180	Dihydroorotate dehydrogenase
BAD_RS04075	PF00156	Phosphoribosyl transferase domain
BAD_RS04090	PF02687	FtsX-like permease family
BAD_RS04090	PF00005	ABC transporter
BAD_RS04090	PF12704	MacB-like periplasmic core domain
BAD_RS04100	PF01256	Carbohydrate kinase
BAD_RS04100	PF03853	YjeF-related protein N-terminus
BAD_RS04105	PF02687	FtsX-like permease family
BAD_RS04105	PF00005	ABC transporter
BAD_RS04105	PF12704	MacB-like periplasmic core domain
BAD_RS04130	PF00501	AMP-binding enzyme
BAD_RS04140	PF00180	Isocitrate/isopropylmalate dehydrogenase
BAD_RS04145	PF00478	IMP dehydrogenase / GMP reductase domain
BAD_RS04155	PF00501	AMP-binding enzyme
BAD_RS04160	PF01327	Polypeptide deformylase
BAD_RS04165	PF00318	Ribosomal protein S2
BAD_RS04170	PF00889	Elongation factor TS
BAD_RS04175	PF00696	Amino acid kinase family
BAD_RS04180	PF01765	Ribosome recycling factor
BAD_RS04190	PF04055	Radical SAM superfamily
BAD_RS04195	PF00977	Histidine biosynthesis protein
BAD_RS04200	PF01502	Phosphoribosyl-AMP cyclohydrolase
BAD_RS04205	PF04715	Anthranilate synthase component I, N terminal region
BAD_RS04205	PF00425	chorismate binding enzyme
BAD_RS04210	PF00291	Pyridoxal-phosphate dependent enzyme
BAD_RS04215	PF00290	Tryptophan synthase alpha chain
BAD_RS04220	PF01790	Prolipoprotein diacylglyceryl transferase
BAD_RS04225	PF00834	Ribulose-phosphate 3 epimerase family
BAD_RS04230	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
BAD_RS04235	PF08029	HisG, C-terminal domain
BAD_RS04235	PF01634	ATP phosphoribosyltransferase
BAD_RS04240	PF01066	CDP-alcohol phosphatidyltransferase
BAD_RS04245	PF05949	Bacterial protein of unknown function (DUF881)
BAD_RS04250	PF06947	Protein of unknown function (DUF1290)
BAD_RS04260	PF03129	Anticodon binding domain
BAD_RS04260	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BAD_RS04260	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BAD_RS04265	PF01066	CDP-alcohol phosphatidyltransferase
BAD_RS04270	PF01709	Transcriptional regulator
BAD_RS04275	PF02075	Crossover junction endodeoxyribonuclease RuvC
BAD_RS04280	PF01330	RuvA N terminal domain
BAD_RS04280	PF07499	RuvA, C-terminal domain
BAD_RS04285	PF17864	RuvB AAA lid domain
BAD_RS04285	PF05496	Holliday junction DNA helicase RuvB P-loop domain
BAD_RS04285	PF05491	RuvB C-terminal winged helix domain
BAD_RS04295	PF00156	Phosphoribosyl transferase domain
BAD_RS04300	PF00549	CoA-ligase
BAD_RS04300	PF08442	ATP-grasp domain
BAD_RS04305	PF00549	CoA-ligase
BAD_RS04305	PF02629	CoA binding domain
BAD_RS04315	PF02142	MGS-like domain
BAD_RS04315	PF01808	AICARFT/IMPCHase bienzyme
BAD_RS04320	PF00230	Major intrinsic protein
BAD_RS04325	PF00849	RNA pseudouridylate synthase
BAD_RS04325	PF01479	S4 domain
BAD_RS04330	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
BAD_RS04330	PF01926	50S ribosome-binding GTPase
BAD_RS04360	PF00271	Helicase conserved C-terminal domain
BAD_RS04360	PF08148	DSHCT (NUC185) domain
BAD_RS04360	PF00270	DEAD/DEAH box helicase
BAD_RS04365	PF13397	RNA polymerase-binding protein
BAD_RS04380	PF13411	MerR HTH family regulatory protein
BAD_RS04385	PF00498	FHA domain
BAD_RS04420	PF02673	Bacitracin resistance protein BacA
BAD_RS04430	PF00226	DnaJ domain
BAD_RS04430	PF00684	DnaJ central domain
BAD_RS04430	PF01556	DnaJ C terminal domain
BAD_RS04435	PF01628	HrcA protein C terminal domain
BAD_RS04440	PF02780	Transketolase, C-terminal domain
BAD_RS04440	PF00456	Transketolase, thiamine diphosphate binding domain
BAD_RS04440	PF02779	Transketolase, pyrimidine binding domain
BAD_RS04445	PF00923	Transaldolase/Fructose-6-phosphate aldolase
BAD_RS04450	PF00155	Aminotransferase class I and II
BAD_RS04460	PF03840	Preprotein translocase SecG subunit
BAD_RS04465	PF00121	Triosephosphate isomerase
BAD_RS04470	PF00162	Phosphoglycerate kinase
BAD_RS04475	PF02650	WhiA C-terminal HTH domain
BAD_RS04475	PF10298	WhiA N-terminal LAGLIDADG-like domain
BAD_RS04475	PF14527	WhiA LAGLIDADG-like domain
BAD_RS04480	PF03668	P-loop ATPase protein family
BAD_RS04485	PF18317	Shikimate 5'-dehydrogenase C-terminal domain
BAD_RS04485	PF08501	Shikimate dehydrogenase substrate binding domain
BAD_RS04490	PF08459	UvrC Helix-hairpin-helix N-terminal
BAD_RS04490	PF02151	UvrB/uvrC motif
BAD_RS04490	PF01541	GIY-YIG catalytic domain
BAD_RS04495	PF00005	ABC transporter
BAD_RS04495	PF17755	UvrA DNA-binding domain
BAD_RS04495	PF17760	UvrA interaction domain
BAD_RS04555	PF12848	ABC transporter
BAD_RS04555	PF16326	ABC transporter C-terminal domain
BAD_RS04555	PF00005	ABC transporter
BAD_RS04565	PF01717	Cobalamin-independent synthase, Catalytic domain
BAD_RS04580	PF02275	Linear amide C-N hydrolases, choloylglycine hydrolase family
BAD_RS04590	PF00814	Glycoprotease family
BAD_RS04595	PF00583	Acetyltransferase (GNAT) family
BAD_RS04595	PF13508	Acetyltransferase (GNAT) domain
BAD_RS04600	PF00814	Glycoprotease family
BAD_RS04605	PF02367	Threonylcarbamoyl adenosine biosynthesis protein TsaE
BAD_RS04615	PF13567	Domain of unknown function (DUF4131)
BAD_RS04615	PF03772	Competence protein
BAD_RS04615	PF00753	Metallo-beta-lactamase superfamily
BAD_RS04620	PF10531	SLBB domain
BAD_RS04625	PF09334	tRNA synthetases class I (M)
BAD_RS04625	PF13603	Leucyl-tRNA synthetase, Domain 2
BAD_RS04625	PF08264	Anticodon-binding domain of tRNA
BAD_RS04630	PF00497	Bacterial extracellular solute-binding proteins, family 3
BAD_RS04635	PF01544	CorA-like Mg2+ transporter protein
BAD_RS04640	PF00300	Histidine phosphatase superfamily (branch 1)
BAD_RS04655	PF00300	Histidine phosphatase superfamily (branch 1)
BAD_RS04665	PF00132	Bacterial transferase hexapeptide (six repeats)
BAD_RS04665	PF12804	MobA-like NTP transferase domain
BAD_RS04675	PF00248	Aldo/keto reductase family
BAD_RS04715	PF02796	Helix-turn-helix domain of resolvase
BAD_RS04715	PF00665	Integrase core domain
BAD_RS04720	PF01695	IstB-like ATP binding protein
BAD_RS04775	PF12704	MacB-like periplasmic core domain
BAD_RS04775	PF02687	FtsX-like permease family
BAD_RS04785	PF00005	ABC transporter
BAD_RS04805	PF01022	Bacterial regulatory protein, arsR family
BAD_RS04815	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
BAD_RS04815	PF14572	Phosphoribosyl synthetase-associated domain
BAD_RS04820	PF01467	Cytidylyltransferase-like
BAD_RS04830	PF00171	Aldehyde dehydrogenase family
BAD_RS04835	PF00464	Serine hydroxymethyltransferase
BAD_RS04840	PF00291	Pyridoxal-phosphate dependent enzyme
BAD_RS04840	PF14821	Threonine synthase N terminus
BAD_RS04845	PF07690	Major Facilitator Superfamily
BAD_RS04855	PF13419	Haloacid dehalogenase-like hydrolase
BAD_RS04860	PF02463	RecF/RecN/SMC N terminal domain
BAD_RS04865	PF01513	ATP-NAD kinase
BAD_RS04870	PF02386	Cation transport protein
BAD_RS04875	PF02254	TrkA-N domain
BAD_RS04875	PF02080	TrkA-C domain
BAD_RS04880	PF01479	S4 domain
BAD_RS04880	PF01728	FtsJ-like methyltransferase
BAD_RS04895	PF01479	S4 domain
BAD_RS04895	PF00579	tRNA synthetases class I (W and Y)
BAD_RS04915	PF14698	Argininosuccinate lyase C-terminal
BAD_RS04915	PF00206	Lyase
BAD_RS04920	PF00764	Arginosuccinate synthase
BAD_RS04925	PF02863	Arginine repressor, C-terminal domain
BAD_RS04925	PF01316	Arginine repressor, DNA binding domain
BAD_RS04930	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
BAD_RS04930	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
BAD_RS04935	PF00202	Aminotransferase class-III
BAD_RS04940	PF00696	Amino acid kinase family
BAD_RS04945	PF01960	ArgJ family
BAD_RS04950	PF01118	Semialdehyde dehydrogenase, NAD binding domain
BAD_RS04950	PF02774	Semialdehyde dehydrogenase, dimerisation domain
BAD_RS04960	PF03483	B3/4 domain
BAD_RS04960	PF17759	Phenylalanyl tRNA synthetase beta chain CLM domain
BAD_RS04960	PF01588	Putative tRNA binding domain
BAD_RS04960	PF03484	tRNA synthetase B5 domain
BAD_RS04960	PF03147	Ferredoxin-fold anticodon binding domain
BAD_RS04965	PF01409	tRNA synthetases class II core domain (F)
BAD_RS04965	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
BAD_RS04970	PF00588	SpoU rRNA Methylase family
BAD_RS04970	PF08032	RNA 2'-O ribose methyltransferase substrate binding
BAD_RS04980	PF00005	ABC transporter
BAD_RS04985	PF00860	Permease family
BAD_RS04990	PF04443	Acyl-protein synthetase, LuxE
BAD_RS05005	PF03641	Possible lysine decarboxylase
BAD_RS05020	PF00589	Phage integrase family
BAD_RS05020	PF14659	Phage integrase, N-terminal SAM-like domain
BAD_RS05025	PF13744	Helix-turn-helix domain
BAD_RS05030	PF05973	Phage derived protein Gp49-like (DUF891)
BAD_RS05040	PF00120	Glutamine synthetase, catalytic domain
BAD_RS05040	PF03951	Glutamine synthetase, beta-Grasp domain
BAD_RS05050	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BAD_RS05050	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
BAD_RS05060	PF07687	Peptidase dimerisation domain
BAD_RS05060	PF01546	Peptidase family M20/M25/M40
BAD_RS05070	PF00005	ABC transporter
BAD_RS05075	PF09819	ABC-type cobalt transport system, permease component
BAD_RS05080	PF10609	NUBPL iron-transfer P-loop NTPase
BAD_RS05080	PF01883	Iron-sulfur cluster assembly protein
BAD_RS05085	PF12826	Helix-hairpin-helix motif
BAD_RS05085	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
BAD_RS05085	PF03120	NAD-dependent DNA ligase OB-fold domain
BAD_RS05085	PF01653	NAD-dependent DNA ligase adenylation domain
BAD_RS05085	PF00533	BRCA1 C Terminus (BRCT) domain
BAD_RS05105	PF00005	ABC transporter
BAD_RS05110	PF00155	Aminotransferase class I and II
BAD_RS05115	PF00480	ROK family
BAD_RS05125	PF03070	TENA/THI-4/PQQC family
BAD_RS05135	PF02361	Cobalt transport protein
BAD_RS05135	PF00005	ABC transporter
BAD_RS05145	PF04434	SWIM zinc finger
BAD_RS05145	PF00271	Helicase conserved C-terminal domain
BAD_RS05145	PF00176	SNF2 family N-terminal domain
BAD_RS05150	PF03051	Peptidase C1-like family
BAD_RS05160	PF07885	Ion channel
BAD_RS05165	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BAD_RS05170	PF02580	D-Tyr-tRNA(Tyr) deacylase
BAD_RS05180	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS05185	PF00128	Alpha amylase, catalytic domain
BAD_RS05195	PF02580	D-Tyr-tRNA(Tyr) deacylase
BAD_RS05205	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ 
BAD_RS05280	PF05697	Bacterial trigger factor protein (TF)
BAD_RS05280	PF05698	Bacterial trigger factor protein (TF) C-terminus
BAD_RS05280	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
BAD_RS05295	PF04055	Radical SAM superfamily
BAD_RS05300	PF01228	Glycine radical
BAD_RS05300	PF02901	Pyruvate formate lyase-like
BAD_RS05310	PF00795	Carbon-nitrogen hydrolase
BAD_RS05310	PF02540	NAD synthase
BAD_RS05315	PF01546	Peptidase family M20/M25/M40
BAD_RS05315	PF07687	Peptidase dimerisation domain
BAD_RS05325	PF03180	NLPA lipoprotein
BAD_RS05330	PF09383	NIL domain
BAD_RS05330	PF00005	ABC transporter
BAD_RS05335	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS05345	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
BAD_RS05350	PF02824	TGS domain
BAD_RS05350	PF04607	Region found in RelA / SpoT proteins
BAD_RS05350	PF13291	ACT domain
BAD_RS05355	PF00692	dUTPase
BAD_RS05375	PF00521	DNA gyrase/topoisomerase IV, subunit A
BAD_RS05375	PF03989	DNA gyrase C-terminal domain, beta-propeller
BAD_RS05380	PF00270	DEAD/DEAH box helicase
BAD_RS05380	PF00271	Helicase conserved C-terminal domain
BAD_RS05380	PF08494	DEAD/H associated
BAD_RS05390	PF00204	DNA gyrase B
BAD_RS05390	PF00986	DNA gyrase B subunit, carboxyl terminus
BAD_RS05390	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BAD_RS05390	PF01751	Toprim domain
BAD_RS05395	PF04545	Sigma-70, region 4
BAD_RS05395	PF04539	Sigma-70 region 3
BAD_RS05395	PF04542	Sigma-70 region 2 
BAD_RS05395	PF00140	Sigma-70 factor, region 1.2
BAD_RS05405	PF00348	Polyprenyl synthetase
BAD_RS05410	PF03793	PASTA domain
BAD_RS05410	PF00069	Protein kinase domain
BAD_RS05425	PF13333	Integrase core domain
BAD_RS05425	PF00665	Integrase core domain
BAD_RS05425	PF13276	HTH-like domain
BAD_RS05435	PF02885	Glycosyl transferase family, helical bundle domain
BAD_RS05435	PF00591	Glycosyl transferase family, a/b domain
BAD_RS05440	PF07516	SecA Wing and Scaffold domain
BAD_RS05440	PF02810	SEC-C motif
BAD_RS05440	PF07517	SecA DEAD-like domain
BAD_RS05440	PF01043	SecA preprotein cross-linking domain
BAD_RS05445	PF16321	Sigma 54 modulation/S30EA ribosomal protein C terminus
BAD_RS05445	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
BAD_RS05450	PF02631	RecX family
BAD_RS05455	PF00154	recA bacterial DNA recombination protein
BAD_RS05465	PF02464	Competence-damaged protein
BAD_RS05465	PF00994	Probable molybdopterin binding domain
BAD_RS05465	PF18146	Damage-inducible protein CinA KH domain
BAD_RS05470	PF01066	CDP-alcohol phosphatidyltransferase
BAD_RS05475	PF13491	4TM region of DNA translocase FtsK/SpoIIIE
BAD_RS05475	PF09397	Ftsk gamma domain
BAD_RS05475	PF01580	FtsK/SpoIIIE family
BAD_RS05475	PF17854	FtsK alpha domain
BAD_RS05480	PF02156	Glycosyl hydrolase family 26
BAD_RS05480	PF03425	Carbohydrate binding domain (family 11)
BAD_RS05490	PF00919	Uncharacterized protein family UPF0004
BAD_RS05490	PF04055	Radical SAM superfamily
BAD_RS05495	PF04607	Region found in RelA / SpoT proteins
BAD_RS05505	PF01027	Inhibitor of apoptosis-promoting Bax1
BAD_RS05520	PF00072	Response regulator receiver domain
BAD_RS05520	PF00196	Bacterial regulatory proteins, luxR family
BAD_RS05530	PF00196	Bacterial regulatory proteins, luxR family
BAD_RS05530	PF00072	Response regulator receiver domain
BAD_RS05535	PF07730	Histidine kinase
BAD_RS05540	PF00005	ABC transporter
BAD_RS05565	PF14602	Hexapeptide repeat of succinyl-transferase
BAD_RS05565	PF12464	Maltose acetyltransferase 
BAD_RS05570	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BAD_RS05570	PF00072	Response regulator receiver domain
BAD_RS05570	PF12833	Helix-turn-helix domain
BAD_RS05570	PF07494	Two component regulator propeller
BAD_RS05570	PF07495	Y_Y_Y domain
BAD_RS05570	PF00512	His Kinase A (phospho-acceptor) domain
BAD_RS05595	PF00330	Aconitase family (aconitate hydratase)
BAD_RS05595	PF00694	Aconitase C-terminal domain
BAD_RS05610	PF05958	tRNA (Uracil-5-)-methyltransferase
BAD_RS05625	PF03372	Endonuclease/Exonuclease/phosphatase family
BAD_RS05630	PF00005	ABC transporter
BAD_RS05630	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BAD_RS05635	PF12911	N-terminal TM domain of oligopeptide transport permease C
BAD_RS05635	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS05640	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS05645	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BAD_RS05650	PF00589	Phage integrase family
BAD_RS05650	PF02899	Phage integrase, N-terminal SAM-like domain
BAD_RS05655	PF02687	FtsX-like permease family
BAD_RS05655	PF12704	MacB-like periplasmic core domain
BAD_RS05655	PF00005	ABC transporter
BAD_RS05660	PF02687	FtsX-like permease family
BAD_RS05660	PF12704	MacB-like periplasmic core domain
BAD_RS05670	PF02153	Prephenate dehydrogenase
BAD_RS05675	PF01817	Chorismate mutase type II
BAD_RS05675	PF00800	Prephenate dehydratase
BAD_RS05675	PF01842	ACT domain
BAD_RS05685	PF00009	Elongation factor Tu GTP binding domain
BAD_RS05685	PF14492	Elongation Factor G, domain II
BAD_RS05685	PF03144	Elongation factor Tu domain 2
BAD_RS05685	PF00679	Elongation factor G C-terminus
BAD_RS05690	PF07690	Major Facilitator Superfamily
BAD_RS05700	PF13614	AAA domain
BAD_RS05705	PF00589	Phage integrase family
BAD_RS05705	PF02899	Phage integrase, N-terminal SAM-like domain
BAD_RS05710	PF00453	Ribosomal protein L20
BAD_RS05715	PF01632	Ribosomal protein L35
BAD_RS05720	PF00707	Translation initiation factor IF-3, C-terminal domain
BAD_RS05720	PF05198	Translation initiation factor IF-3, N-terminal domain
BAD_RS05725	PF13537	Glutamine amidotransferase domain
BAD_RS05725	PF00733	Asparagine synthase
BAD_RS05735	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
BAD_RS05735	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BAD_RS05740	PF04073	Aminoacyl-tRNA editing domain
BAD_RS05745	PF02401	LytB protein
BAD_RS05750	PF01263	Aldose 1-epimerase
BAD_RS05760	PF04542	Sigma-70 region 2 
BAD_RS05760	PF08281	Sigma-70, region 4
BAD_RS05765	PF08245	Mur ligase middle domain
BAD_RS05765	PF02875	Mur ligase family, glutamate ligase domain
BAD_RS05775	PF01177	Asp/Glu/Hydantoin racemase
BAD_RS05780	PF02875	Mur ligase family, glutamate ligase domain
BAD_RS05780	PF08245	Mur ligase middle domain
BAD_RS05785	PF00557	Metallopeptidase family M24
BAD_RS05785	PF05195	Aminopeptidase P, N-terminal domain
BAD_RS05790	PF00293	NUDIX domain
BAD_RS05795	PF00005	ABC transporter
BAD_RS05795	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BAD_RS05800	PF12911	N-terminal TM domain of oligopeptide transport permease C
BAD_RS05800	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS05805	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS05810	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BAD_RS05815	PF01325	Iron dependent repressor, N-terminal DNA binding domain
BAD_RS05815	PF00480	ROK family
BAD_RS05835	PF08245	Mur ligase middle domain
BAD_RS05835	PF02875	Mur ligase family, glutamate ligase domain
BAD_RS05835	PF01225	Mur ligase family, catalytic domain
BAD_RS05840	PF03033	Glycosyltransferase family 28 N-terminal domain
BAD_RS05840	PF04101	Glycosyltransferase family 28 C-terminal domain
BAD_RS05845	PF01098	Cell cycle protein
BAD_RS05850	PF08245	Mur ligase middle domain
BAD_RS05850	PF02875	Mur ligase family, glutamate ligase domain
BAD_RS05855	PF00953	Glycosyl transferase family 4
BAD_RS05860	PF01225	Mur ligase family, catalytic domain
BAD_RS05860	PF02875	Mur ligase family, glutamate ligase domain
BAD_RS05860	PF08245	Mur ligase middle domain
BAD_RS05870	PF00905	Penicillin binding protein transpeptidase domain
BAD_RS05870	PF03717	Penicillin-binding Protein dimerisation domain
BAD_RS05880	PF01795	MraW methylase family
BAD_RS05885	PF02381	MraZ protein, putative antitoxin-like
BAD_RS05895	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BAD_RS05895	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
BAD_RS05900	PF03477	ATP cone domain
BAD_RS05910	PF01726	LexA DNA binding domain
BAD_RS05910	PF00717	Peptidase S24-like
BAD_RS05915	PF16916	Dimerisation domain of Zinc Transporter
BAD_RS05915	PF01545	Cation efflux family
BAD_RS05920	PF00056	lactate/malate dehydrogenase, NAD binding domain
BAD_RS05920	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
BAD_RS05925	PF16360	GTP-binding GTPase Middle Region
BAD_RS05925	PF13167	GTP-binding GTPase N-terminal
BAD_RS05925	PF01926	50S ribosome-binding GTPase
BAD_RS05930	PF05175	Methyltransferase small domain
BAD_RS05930	PF08468	Methyltransferase small domain N-terminal
BAD_RS05935	PF04408	Helicase associated domain (HA2)
BAD_RS05935	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
BAD_RS05935	PF00270	DEAD/DEAH box helicase
BAD_RS05935	PF11898	Domain of unknown function (DUF3418)
BAD_RS05935	PF00271	Helicase conserved C-terminal domain
BAD_RS05940	PF07690	Major Facilitator Superfamily
BAD_RS05950	PF00120	Glutamine synthetase, catalytic domain
BAD_RS05950	PF03951	Glutamine synthetase, beta-Grasp domain
BAD_RS05955	PF00977	Histidine biosynthesis protein
BAD_RS05960	PF00117	Glutamine amidotransferase class-I
BAD_RS05970	PF00475	Imidazoleglycerol-phosphate dehydratase
BAD_RS05975	PF00155	Aminotransferase class I and II
BAD_RS05980	PF00815	Histidinol dehydrogenase
BAD_RS05985	PF14579	Helix-hairpin-helix motif
BAD_RS05985	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
BAD_RS05985	PF02811	PHP domain
BAD_RS05985	PF07733	Bacterial DNA polymerase III alpha NTPase domain
BAD_RS05990	PF00849	RNA pseudouridylate synthase
BAD_RS05995	PF01252	Signal peptidase (SPase) II
BAD_RS06010	PF04472	Cell division protein SepF
BAD_RS06015	PF00091	Tubulin/FtsZ family, GTPase domain
BAD_RS06015	PF12327	FtsZ family, C-terminal domain
BAD_RS06020	PF01207	Dihydrouridine synthase (Dus)
BAD_RS06025	PF03129	Anticodon binding domain
BAD_RS06025	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BAD_RS06050	PF00248	Aldo/keto reductase family
BAD_RS06060	PF02110	Hydroxyethylthiazole kinase family
BAD_RS06065	PF01964	Radical SAM ThiC family
BAD_RS06065	PF02581	Thiamine monophosphate synthase
BAD_RS06065	PF13667	ThiC-associated domain 
BAD_RS06070	PF08543	Phosphomethylpyrimidine kinase
BAD_RS06070	PF02581	Thiamine monophosphate synthase
BAD_RS06075	PF01910	Thiamine-binding protein
BAD_RS06080	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS06085	PF01306	LacY proton/sugar symporter
BAD_RS06090	PF00251	Glycosyl hydrolases family 32 N-terminal domain
BAD_RS06090	PF08244	Glycosyl hydrolases family 32 C terminal
BAD_RS06095	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS06105	PF01156	Inosine-uridine preferring nucleoside hydrolase
BAD_RS06110	PF01255	Putative undecaprenyl diphosphate synthase
BAD_RS06115	PF02565	Recombination protein O C terminal
BAD_RS06115	PF11967	Recombination protein O N terminal
BAD_RS06125	PF04551	GcpE protein
BAD_RS06130	PF13288	DXP reductoisomerase C-terminal domain
BAD_RS06130	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
BAD_RS06130	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
BAD_RS06145	PF11253	Protein of unknown function (DUF3052)
BAD_RS06150	PF05362	Lon protease (S16) C-terminal proteolytic domain
BAD_RS06150	PF13180	PDZ domain
BAD_RS06160	PF00570	HRDC domain
BAD_RS06160	PF13361	UvrD-like helicase C-terminal domain
BAD_RS06160	PF00580	UvrD/REP helicase N-terminal domain
BAD_RS06175	PF02811	PHP domain
BAD_RS06185	PF01678	Diaminopimelate epimerase
BAD_RS06190	PF01177	Asp/Glu/Hydantoin racemase
BAD_RS06200	PF00155	Aminotransferase class I and II
BAD_RS06210	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BAD_RS06215	PF01112	Asparaginase
BAD_RS06230	PF13333	Integrase core domain
BAD_RS06230	PF00665	Integrase core domain
BAD_RS06230	PF13276	HTH-like domain
BAD_RS06235	PF01695	IstB-like ATP binding protein
BAD_RS06240	PF09827	CRISPR associated protein Cas2
BAD_RS06245	PF01867	CRISPR associated protein Cas1
BAD_RS06275	PF08264	Anticodon-binding domain of tRNA
BAD_RS06275	PF00133	tRNA synthetases class I (I, L, M and V)
BAD_RS06280	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
BAD_RS06285	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS06295	PF00664	ABC transporter transmembrane region
BAD_RS06295	PF00005	ABC transporter
BAD_RS06300	PF00005	ABC transporter
BAD_RS06300	PF00664	ABC transporter transmembrane region
BAD_RS06310	PF14310	Fibronectin type III-like domain
BAD_RS06310	PF00933	Glycosyl hydrolase family 3 N terminal domain
BAD_RS06310	PF01915	Glycosyl hydrolase family 3 C-terminal domain
BAD_RS06320	PF02595	Glycerate kinase family
BAD_RS06330	PF00933	Glycosyl hydrolase family 3 N terminal domain
BAD_RS06330	PF01915	Glycosyl hydrolase family 3 C-terminal domain
BAD_RS06330	PF14310	Fibronectin type III-like domain
BAD_RS06350	PF00440	Bacterial regulatory proteins, tetR family
BAD_RS06360	PF04616	Glycosyl hydrolases family 43
BAD_RS06360	PF17851	Beta xylosidase C-terminal Concanavalin A-like domain 
BAD_RS06370	PF06964	Alpha-L-arabinofuranosidase C-terminal domain
BAD_RS06395	PF13977	BetI-type transcriptional repressor, C-terminal
BAD_RS06395	PF00440	Bacterial regulatory proteins, tetR family
BAD_RS06400	PF08532	Beta-galactosidase trimerisation domain
BAD_RS06400	PF08533	Beta-galactosidase C-terminal domain
BAD_RS06400	PF02449	Beta-galactosidase
BAD_RS06405	PF00440	Bacterial regulatory proteins, tetR family
BAD_RS06425	PF03477	ATP cone domain
BAD_RS06425	PF13597	Anaerobic ribonucleoside-triphosphate reductase
BAD_RS06430	PF13742	OB-fold nucleic acid binding domain
BAD_RS06430	PF02601	Exonuclease VII, large subunit
BAD_RS06435	PF02609	Exonuclease VII small subunit
BAD_RS06460	PF13614	AAA domain
BAD_RS06475	PF02541	Ppx/GppA phosphatase family
BAD_RS06480	PF00155	Aminotransferase class I and II
BAD_RS06485	PF03852	DNA mismatch endonuclease Vsr
BAD_RS06490	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
BAD_RS06490	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
BAD_RS06495	PF13361	UvrD-like helicase C-terminal domain
BAD_RS06495	PF00580	UvrD/REP helicase N-terminal domain
BAD_RS06495	PF12462	DNA helicase IV / RNA helicase N terminal
BAD_RS06505	PF02976	DNA mismatch repair enzyme MutH
BAD_RS06520	PF02976	DNA mismatch repair enzyme MutH
BAD_RS06525	PF00145	C-5 cytosine-specific DNA methylase
BAD_RS06680	PF00497	Bacterial extracellular solute-binding proteins, family 3
BAD_RS06685	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS06690	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS06700	PF00005	ABC transporter
BAD_RS06760	PF13614	AAA domain
BAD_RS06760	PF00376	MerR family regulatory protein
BAD_RS06785	PF00665	Integrase core domain
BAD_RS06785	PF13276	HTH-like domain
BAD_RS06785	PF01527	Transposase
BAD_RS06785	PF13333	Integrase core domain
BAD_RS06790	PF07728	AAA domain (dynein-related subfamily)
BAD_RS06800	PF09019	EcoRII C terminal
BAD_RS06805	PF00145	C-5 cytosine-specific DNA methylase
BAD_RS06805	PF01381	Helix-turn-helix
BAD_RS06810	PF00239	Resolvase, N terminal domain
BAD_RS06810	PF02796	Helix-turn-helix domain of resolvase
BAD_RS06820	PF00232	Glycosyl hydrolase family 1
BAD_RS06825	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS06830	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS06835	PF01547	Bacterial extracellular solute-binding protein
BAD_RS06840	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS06865	PF01327	Polypeptide deformylase
BAD_RS06870	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
BAD_RS06870	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
BAD_RS06870	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
BAD_RS06870	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
BAD_RS06875	PF11838	ERAP1-like C-terminal domain
BAD_RS06875	PF01433	Peptidase family M1 domain
BAD_RS06880	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
BAD_RS06880	PF17770	Ribonuclease J C-terminal domain
BAD_RS06880	PF12706	Beta-lactamase superfamily domain
BAD_RS06885	PF00701	Dihydrodipicolinate synthetase family
BAD_RS06890	PF07690	Major Facilitator Superfamily
BAD_RS06900	PF01979	Amidohydrolase family
BAD_RS06905	PF04945	YHS domain
BAD_RS06910	PF02583	Metal-sensitive transcriptional repressor
BAD_RS06915	PF01113	Dihydrodipicolinate reductase, N-terminus
BAD_RS06915	PF05173	Dihydrodipicolinate reductase, C-terminus
BAD_RS06925	PF13361	UvrD-like helicase C-terminal domain
BAD_RS06925	PF00580	UvrD/REP helicase N-terminal domain
BAD_RS06945	PF03793	PASTA domain
BAD_RS06945	PF00069	Protein kinase domain
BAD_RS06955	PF07726	ATPase family associated with various cellular activities (AAA)
BAD_RS06955	PF17863	AAA lid domain
BAD_RS06990	PF04997	RNA polymerase Rpb1, domain 1
BAD_RS06990	PF00623	RNA polymerase Rpb1, domain 2
BAD_RS06990	PF04983	RNA polymerase Rpb1, domain 3
BAD_RS06990	PF05000	RNA polymerase Rpb1, domain 4
BAD_RS06990	PF04998	RNA polymerase Rpb1, domain 5
BAD_RS06995	PF10385	RNA polymerase beta subunit external 1 domain
BAD_RS06995	PF04565	RNA polymerase Rpb2, domain 3
BAD_RS06995	PF04561	RNA polymerase Rpb2, domain 2
BAD_RS06995	PF04563	RNA polymerase beta subunit
BAD_RS06995	PF00562	RNA polymerase Rpb2, domain 6
BAD_RS06995	PF04560	RNA polymerase Rpb2, domain 7
BAD_RS07005	PF10576	Iron-sulfur binding domain of endonuclease III
BAD_RS07005	PF00633	Helix-hairpin-helix motif
BAD_RS07005	PF00730	HhH-GPD superfamily base excision DNA repair protein
BAD_RS07010	PF00588	SpoU rRNA Methylase family
BAD_RS07015	PF05167	Uncharacterised ACR (DUF711)
BAD_RS07025	PF00251	Glycosyl hydrolases family 32 N-terminal domain
BAD_RS07025	PF08244	Glycosyl hydrolases family 32 C terminal
BAD_RS07030	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS07040	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS07045	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS07055	PF00288	GHMP kinases N terminal domain
BAD_RS07055	PF08544	GHMP kinases C terminal 
BAD_RS07055	PF10509	Galactokinase galactose-binding signature
BAD_RS07060	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
BAD_RS07060	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
BAD_RS07065	PF08220	DeoR-like helix-turn-helix domain
BAD_RS07065	PF00455	DeoR C terminal sensor domain
BAD_RS07070	PF01180	Dihydroorotate dehydrogenase
BAD_RS07075	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
BAD_RS07080	PF00912	Transglycosylase
BAD_RS07080	PF00905	Penicillin binding protein transpeptidase domain
BAD_RS07085	PF13545	Crp-like helix-turn-helix domain
BAD_RS07085	PF00027	Cyclic nucleotide-binding domain
BAD_RS07090	PF10437	Bacterial lipoate protein ligase C-terminus
BAD_RS07090	PF03099	Biotin/lipoate A/B protein ligase family
BAD_RS07100	PF00180	Isocitrate/isopropylmalate dehydrogenase
BAD_RS07110	PF00326	Prolyl oligopeptidase family
BAD_RS07110	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
BAD_RS07120	PF01597	Glycine cleavage H-protein
BAD_RS07125	PF17969	L,D-transpeptidase C-terminal domain
BAD_RS07125	PF03734	L,D-transpeptidase catalytic domain
BAD_RS07130	PF09297	NADH pyrophosphatase zinc ribbon domain
BAD_RS07130	PF09296	NADH pyrophosphatase-like rudimentary NUDIX domain
BAD_RS07130	PF00293	NUDIX domain
BAD_RS07145	PF00085	Thioredoxin
BAD_RS07185	PF01451	Low molecular weight phosphotyrosine protein phosphatase
BAD_RS07190	PF13614	AAA domain
BAD_RS07260	PF13276	HTH-like domain
BAD_RS07260	PF00665	Integrase core domain
BAD_RS07270	PF01527	Transposase
BAD_RS07270	PF13276	HTH-like domain
BAD_RS07270	PF13333	Integrase core domain
BAD_RS07270	PF00665	Integrase core domain
BAD_RS07280	PF02796	Helix-turn-helix domain of resolvase
BAD_RS07280	PF00665	Integrase core domain
BAD_RS07285	PF01695	IstB-like ATP binding protein
BAD_RS07290	PF01527	Transposase
BAD_RS07305	PF00535	Glycosyl transferase family 2
BAD_RS07315	PF00132	Bacterial transferase hexapeptide (six repeats)
BAD_RS07315	PF14602	Hexapeptide repeat of succinyl-transferase
BAD_RS07315	PF12804	MobA-like NTP transferase domain
BAD_RS07320	PF01501	Glycosyl transferase family 8
BAD_RS07320	PF00535	Glycosyl transferase family 2
BAD_RS07335	PF00534	Glycosyl transferases group 1
BAD_RS07335	PF13439	Glycosyltransferase Family 4
BAD_RS07340	PF02397	Bacterial sugar transferase
BAD_RS07355	PF02661	Fic/DOC family
BAD_RS07355	PF13784	Fic/DOC family N-terminal
BAD_RS07360	PF07690	Major Facilitator Superfamily
BAD_RS07365	PF00563	EAL domain
BAD_RS07365	PF13426	PAS domain
BAD_RS07365	PF00990	Diguanylate cyclase, GGDEF domain
BAD_RS07370	PF01566	Natural resistance-associated macrophage protein
BAD_RS07370	PF03358	NADPH-dependent FMN reductase
BAD_RS07375	PF00248	Aldo/keto reductase family
BAD_RS07390	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS07395	PF08532	Beta-galactosidase trimerisation domain
BAD_RS07395	PF02449	Beta-galactosidase
BAD_RS07405	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS07410	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS07415	PF01547	Bacterial extracellular solute-binding protein
BAD_RS07420	PF01174	SNO glutamine amidotransferase family
BAD_RS07425	PF01680	SOR/SNZ family
BAD_RS07430	PF00664	ABC transporter transmembrane region
BAD_RS07430	PF00005	ABC transporter
BAD_RS07435	PF00501	AMP-binding enzyme
BAD_RS07440	PF02610	L-arabinose isomerase
BAD_RS07440	PF11762	L-arabinose isomerase C-terminal domain
BAD_RS07445	PF00596	Class II Aldolase and Adducin N-terminal domain
BAD_RS07455	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS07460	PF00293	NUDIX domain
BAD_RS07460	PF02545	Maf-like protein
BAD_RS07465	PF00288	GHMP kinases N terminal domain
BAD_RS07465	PF08544	GHMP kinases C terminal 
BAD_RS07470	PF01842	ACT domain
BAD_RS07470	PF00742	Homoserine dehydrogenase
BAD_RS07470	PF03447	Homoserine dehydrogenase, NAD binding domain
BAD_RS07475	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
BAD_RS07475	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
BAD_RS07480	PF05746	DALR anticodon binding domain
BAD_RS07480	PF03485	Arginyl tRNA synthetase N terminal domain
BAD_RS07480	PF00750	tRNA synthetases class I (R)
BAD_RS07485	PF00324	Amino acid permease
BAD_RS07490	PF01042	Endoribonuclease L-PSP
BAD_RS07515	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
BAD_RS07520	PF01939	Endonuclease NucS
BAD_RS07525	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
BAD_RS07530	PF02874	ATP synthase alpha/beta family, beta-barrel domain
BAD_RS07530	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BAD_RS07535	PF00231	ATP synthase
BAD_RS07540	PF00306	ATP synthase alpha/beta chain, C terminal domain
BAD_RS07540	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BAD_RS07540	PF02874	ATP synthase alpha/beta family, beta-barrel domain
BAD_RS07545	PF00213	ATP synthase delta (OSCP) subunit
BAD_RS07550	PF00430	ATP synthase B/B' CF(0)
BAD_RS07555	PF00137	ATP synthase subunit C
BAD_RS07560	PF00119	ATP synthase A chain
BAD_RS07565	PF04204	Homoserine O-succinyltransferase 
BAD_RS07575	PF11896	Domain of unknown function (DUF3416)
BAD_RS07575	PF00128	Alpha amylase, catalytic domain
BAD_RS07580	PF00005	ABC transporter
BAD_RS07600	PF00196	Bacterial regulatory proteins, luxR family
BAD_RS07600	PF00072	Response regulator receiver domain
BAD_RS07610	PF00719	Inorganic pyrophosphatase
BAD_RS07615	PF02659	Putative manganese efflux pump
BAD_RS07625	PF00486	Transcriptional regulatory protein, C terminal
BAD_RS07630	PF10576	Iron-sulfur binding domain of endonuclease III
BAD_RS07630	PF00730	HhH-GPD superfamily base excision DNA repair protein
BAD_RS07630	PF00633	Helix-hairpin-helix motif
BAD_RS07640	PF08264	Anticodon-binding domain of tRNA
BAD_RS07640	PF00133	tRNA synthetases class I (I, L, M and V)
BAD_RS07650	PF01817	Chorismate mutase type II
BAD_RS07650	PF02153	Prephenate dehydrogenase
BAD_RS07655	PF01037	Lrp/AsnC ligand binding domain
BAD_RS07660	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BAD_RS07660	PF07498	Rho termination factor, N-terminal domain
BAD_RS07660	PF07497	Rho termination factor, RNA-binding domain
BAD_RS07665	PF01593	Flavin containing amine oxidoreductase
BAD_RS07670	PF10611	Protein of unknown function (DUF2469)
BAD_RS07680	PF02934	GatB/GatE catalytic domain
BAD_RS07680	PF02637	GatB domain
BAD_RS07685	PF01425	Amidase
BAD_RS07690	PF02686	Glu-tRNAGln amidotransferase C subunit
BAD_RS07705	PF02646	RmuC family
BAD_RS07715	PF07724	AAA domain (Cdc48 subfamily)
BAD_RS07715	PF00004	ATPase family associated with various cellular activities (AAA)
BAD_RS07715	PF10431	C-terminal, D2-small domain, of ClpB protein 
BAD_RS07715	PF02861	Clp amino terminal domain, pathogenicity island component
BAD_RS07715	PF17871	AAA lid domain
BAD_RS07720	PF01557	Fumarylacetoacetate (FAA) hydrolase family
BAD_RS07750	PF01168	Alanine racemase, N-terminal domain
BAD_RS07760	PF00749	tRNA synthetases class I (E and Q), catalytic domain
BAD_RS07770	PF00230	Major intrinsic protein
BAD_RS07785	PF03948	Ribosomal protein L9, C-terminal domain
BAD_RS07785	PF01281	Ribosomal protein L9, N-terminal domain
BAD_RS07790	PF01084	Ribosomal protein S18
BAD_RS07795	PF00436	Single-strand binding protein family
BAD_RS07800	PF01250	Ribosomal protein S6
BAD_RS07805	PF14572	Phosphoribosyl synthetase-associated domain
BAD_RS07805	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
BAD_RS07810	PF00294	pfkB family carbohydrate kinase
BAD_RS07815	PF01156	Inosine-uridine preferring nucleoside hydrolase
BAD_RS07820	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS07830	PF07690	Major Facilitator Superfamily
BAD_RS07845	PF16363	GDP-mannose 4,6 dehydratase
BAD_RS07855	PF00884	Sulfatase
BAD_RS07860	PF01501	Glycosyl transferase family 8
BAD_RS07860	PF00535	Glycosyl transferase family 2
BAD_RS07865	PF00535	Glycosyl transferase family 2
BAD_RS07870	PF00005	ABC transporter
BAD_RS07890	PF00535	Glycosyl transferase family 2
BAD_RS07895	PF01370	NAD dependent epimerase/dehydratase family
BAD_RS07900	PF16363	GDP-mannose 4,6 dehydratase
BAD_RS07905	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
BAD_RS07910	PF00483	Nucleotidyl transferase
BAD_RS07980	PF00005	ABC transporter
BAD_RS07980	PF09383	NIL domain
BAD_RS07995	PF02705	K+ potassium transporter
BAD_RS08000	PF01026	TatD related DNase
BAD_RS08005	PF02018	Carbohydrate binding domain
BAD_RS08005	PF06964	Alpha-L-arabinofuranosidase C-terminal domain
BAD_RS08015	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS08030	PF07944	Beta-L-arabinofuranosidase, GH127
BAD_RS08035	PF00664	ABC transporter transmembrane region
BAD_RS08035	PF00005	ABC transporter
BAD_RS08040	PF00664	ABC transporter transmembrane region
BAD_RS08040	PF00005	ABC transporter
BAD_RS08050	PF00083	Sugar (and other) transporter
BAD_RS08065	PF08264	Anticodon-binding domain of tRNA
BAD_RS08065	PF09334	tRNA synthetases class I (M)
BAD_RS08080	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BAD_RS08085	PF07859	alpha/beta hydrolase fold
BAD_RS08085	PF00331	Glycosyl hydrolase family 10
BAD_RS08090	PF09335	SNARE associated Golgi protein
BAD_RS08100	PF13419	Haloacid dehalogenase-like hydrolase
BAD_RS08110	PF13411	MerR HTH family regulatory protein
BAD_RS08115	PF00684	DnaJ central domain
BAD_RS08115	PF01556	DnaJ C terminal domain
BAD_RS08115	PF00226	DnaJ domain
BAD_RS08120	PF01025	GrpE
BAD_RS08125	PF00012	Hsp70 protein
BAD_RS08130	PF00245	Alkaline phosphatase
BAD_RS08135	PF01925	Sulfite exporter TauE/SafE
BAD_RS08145	PF05737	Collagen binding domain
BAD_RS08145	PF17802	Prealbumin-like fold domain
BAD_RS08145	PF05738	Cna protein B-type domain
BAD_RS08170	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS08185	PF00128	Alpha amylase, catalytic domain
BAD_RS08185	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
BAD_RS08185	PF03714	Bacterial pullanase-associated domain
BAD_RS08190	PF02446	4-alpha-glucanotransferase
BAD_RS08195	PF00128	Alpha amylase, catalytic domain
BAD_RS08205	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS08210	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS08215	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS08225	PF00300	Histidine phosphatase superfamily (branch 1)
BAD_RS08235	PF00881	Nitroreductase family
BAD_RS08260	PF02146	Sir2 family
BAD_RS08265	PF13291	ACT domain
BAD_RS08265	PF00291	Pyridoxal-phosphate dependent enzyme
BAD_RS08270	PF00128	Alpha amylase, catalytic domain
BAD_RS08275	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS08280	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS08290	PF00480	ROK family
BAD_RS08295	PF16875	Glycosyl hydrolase family 36 N-terminal domain
BAD_RS08295	PF16874	Glycosyl hydrolase family 36 C-terminal domain
BAD_RS08300	PF11734	TilS substrate C-terminal domain
BAD_RS08300	PF01171	PP-loop family
BAD_RS08300	PF14437	MafB19-like deaminase
BAD_RS08305	PF00999	Sodium/hydrogen exchanger family
BAD_RS08315	PF00692	dUTPase
BAD_RS08320	PF00689	Cation transporting ATPase, C-terminus
BAD_RS08320	PF00690	Cation transporter/ATPase, N-terminus
BAD_RS08325	PF16353	Domain of unknown function(DUF4981)
BAD_RS08325	PF00703	Glycosyl hydrolases family 2
BAD_RS08325	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
BAD_RS08325	PF02837	Glycosyl hydrolases family 2, sugar binding domain
BAD_RS08325	PF02929	Beta galactosidase small chain
BAD_RS08335	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS08345	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS08350	PF00528	Binding-protein-dependent transport system inner membrane component
BAD_RS08365	PF08032	RNA 2'-O ribose methyltransferase substrate binding
BAD_RS08365	PF00588	SpoU rRNA Methylase family
BAD_RS08375	PF17912	MalK OB fold domain
BAD_RS08375	PF00005	ABC transporter
BAD_RS08380	PF00158	Sigma-54 interaction domain
BAD_RS08380	PF02954	Bacterial regulatory protein, Fis family
BAD_RS08380	PF00072	Response regulator receiver domain
BAD_RS08390	PF00654	Voltage gated chloride channel
BAD_RS08405	PF01915	Glycosyl hydrolase family 3 C-terminal domain
BAD_RS08405	PF00933	Glycosyl hydrolase family 3 N terminal domain
BAD_RS08405	PF14310	Fibronectin type III-like domain
BAD_RS08430	PF01979	Amidohydrolase family
BAD_RS08435	PF08532	Beta-galactosidase trimerisation domain
BAD_RS08435	PF02449	Beta-galactosidase
BAD_RS08435	PF08533	Beta-galactosidase C-terminal domain
BAD_RS08450	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
BAD_RS08455	PF16353	Domain of unknown function(DUF4981)
BAD_RS08455	PF02929	Beta galactosidase small chain
BAD_RS08455	PF00703	Glycosyl hydrolases family 2
BAD_RS08455	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
BAD_RS08455	PF02837	Glycosyl hydrolases family 2, sugar binding domain
BAD_RS08460	PF00356	Bacterial regulatory proteins, lacI family
BAD_RS08480	PF14310	Fibronectin type III-like domain
BAD_RS08480	PF00933	Glycosyl hydrolase family 3 N terminal domain
BAD_RS08480	PF01915	Glycosyl hydrolase family 3 C-terminal domain
BAD_RS08500	PF01915	Glycosyl hydrolase family 3 C-terminal domain
BAD_RS08500	PF00933	Glycosyl hydrolase family 3 N terminal domain
BAD_RS08500	PF14310	Fibronectin type III-like domain
BAD_RS08505	PF00069	Protein kinase domain
BAD_RS08505	PF00400	WD domain, G-beta repeat
BAD_RS08525	PF00398	Ribosomal RNA adenine dimethylase
BAD_RS08530	PF00288	GHMP kinases N terminal domain
BAD_RS08530	PF08544	GHMP kinases C terminal 
BAD_RS08540	PF13735	tRNA nucleotidyltransferase domain 2 putative
BAD_RS08540	PF01743	Poly A polymerase head domain
BAD_RS08540	PF12627	Probable RNA and SrmB- binding site of polymerase A
BAD_RS08545	PF00293	NUDIX domain
BAD_RS08565	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BAD_RS08570	PF02195	ParB-like nuclease domain
BAD_RS08570	PF17762	HTH domain found in ParB protein
BAD_RS08575	PF13614	AAA domain
BAD_RS08580	PF02527	rRNA small subunit methyltransferase G
BAD_RS08585	PF01424	R3H domain
BAD_RS08585	PF14804	Jag N-terminus
BAD_RS08590	PF02096	60Kd inner membrane protein
BAD_RS08595	PF00825	Ribonuclease P
BAD_RS08600	PF00468	Ribosomal protein L34
BAD_RS08615	PF01872	RibD C-terminal domain
BAD_RS08615	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
BAD_RS08625	PF00005	ABC transporter
BAD_RS08625	PF12848	ABC transporter
