locus-tag class description CJD48_RS00005 PF00665 Integrase core domain CJD48_RS00025 PF00145 C-5 cytosine-specific DNA methylase CJD48_RS00050 PF00578 AhpC/TSA family CJD48_RS00065 PF02590 Predicted SPOUT methyltransferase CJD48_RS00075 PF02687 FtsX-like permease family CJD48_RS00075 PF12704 MacB-like periplasmic core domain CJD48_RS00075 PF00005 ABC transporter CJD48_RS00090 PF00324 Amino acid permease CJD48_RS00095 PF02929 Beta galactosidase small chain CJD48_RS00095 PF00703 Glycosyl hydrolases family 2 CJD48_RS00095 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CJD48_RS00095 PF02837 Glycosyl hydrolases family 2, sugar binding domain CJD48_RS00105 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CJD48_RS00105 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CJD48_RS00110 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CJD48_RS00110 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CJD48_RS00115 PF07690 Major Facilitator Superfamily CJD48_RS00115 PF00083 Sugar (and other) transporter CJD48_RS00130 PF09244 Domain of unknown function (DUF1964) CJD48_RS00130 PF00128 Alpha amylase, catalytic domain CJD48_RS00135 PF13407 Periplasmic binding protein domain CJD48_RS00135 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS00140 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJD48_RS00145 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJD48_RS00150 PF00709 Adenylosuccinate synthetase CJD48_RS00155 PF01116 Fructose-bisphosphate aldolase class-II CJD48_RS00160 PF01522 Polysaccharide deacetylase CJD48_RS00170 PF03432 Relaxase/Mobilisation nuclease domain CJD48_RS00180 PF12008 Type I restriction and modification enzyme - subunit R C terminal CJD48_RS00180 PF18766 SWI2/SNF2 ATPase CJD48_RS00180 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CJD48_RS00190 PF01420 Type I restriction modification DNA specificity domain CJD48_RS00200 PF12161 HsdM N-terminal domain CJD48_RS00200 PF02384 N-6 DNA Methylase CJD48_RS00220 PF14659 Phage integrase, N-terminal SAM-like domain CJD48_RS00220 PF00589 Phage integrase family CJD48_RS00240 PF01435 Peptidase family M48 CJD48_RS00245 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD48_RS00250 PF00403 Heavy-metal-associated domain CJD48_RS00255 PF13180 PDZ domain CJD48_RS00255 PF17820 PDZ domain CJD48_RS00260 PF01702 Queuine tRNA-ribosyltransferase CJD48_RS00285 PF01906 Putative heavy-metal-binding CJD48_RS00300 PF00293 NUDIX domain CJD48_RS00320 PF01641 SelR domain CJD48_RS00320 PF01625 Peptide methionine sulfoxide reductase CJD48_RS00350 PF01061 ABC-2 type transporter CJD48_RS00355 PF01061 ABC-2 type transporter CJD48_RS00360 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CJD48_RS00360 PF00326 Prolyl oligopeptidase family CJD48_RS00380 PF01098 Cell cycle protein CJD48_RS00385 PF00905 Penicillin binding protein transpeptidase domain CJD48_RS00395 PF03793 PASTA domain CJD48_RS00395 PF00069 Protein kinase domain CJD48_RS00400 PF00117 Glutamine amidotransferase class-I CJD48_RS00415 PF06781 Cell division protein CrgA CJD48_RS00440 PF13333 Integrase core domain CJD48_RS00440 PF13276 HTH-like domain CJD48_RS00440 PF00665 Integrase core domain CJD48_RS00455 PF00343 Carbohydrate phosphorylase CJD48_RS00465 PF00664 ABC transporter transmembrane region CJD48_RS00465 PF00005 ABC transporter CJD48_RS00495 PF07690 Major Facilitator Superfamily CJD48_RS00520 PF00665 Integrase core domain CJD48_RS00520 PF13936 Helix-turn-helix domain CJD48_RS00525 PF00535 Glycosyl transferase family 2 CJD48_RS00540 PF14524 Wzt C-terminal domain CJD48_RS00540 PF00005 ABC transporter CJD48_RS00550 PF00483 Nucleotidyl transferase CJD48_RS00570 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CJD48_RS00580 PF16363 GDP-mannose 4,6 dehydratase CJD48_RS00595 PF01183 Glycosyl hydrolases family 25 CJD48_RS00605 PF16363 GDP-mannose 4,6 dehydratase CJD48_RS00625 PF00579 tRNA synthetases class I (W and Y) CJD48_RS00645 PF00311 Phosphoenolpyruvate carboxylase CJD48_RS00655 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD48_RS00660 PF00578 AhpC/TSA family CJD48_RS00660 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJD48_RS00665 PF00484 Carbonic anhydrase CJD48_RS00670 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS00675 PF00571 CBS domain CJD48_RS00675 PF03471 Transporter associated domain CJD48_RS00675 PF01595 Cyclin M transmembrane N-terminal domain CJD48_RS00680 PF00892 EamA-like transporter family CJD48_RS00685 PF00210 Ferritin-like domain CJD48_RS00695 PF03611 PTS system sugar-specific permease component CJD48_RS00700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD48_RS00705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD48_RS00710 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS00735 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CJD48_RS00740 PF01741 Large-conductance mechanosensitive channel, MscL CJD48_RS00750 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CJD48_RS00750 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJD48_RS00765 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS00780 PF13333 Integrase core domain CJD48_RS00780 PF00665 Integrase core domain CJD48_RS00780 PF13276 HTH-like domain CJD48_RS00800 PF03989 DNA gyrase C-terminal domain, beta-propeller CJD48_RS00800 PF00521 DNA gyrase/topoisomerase IV, subunit A CJD48_RS00805 PF01751 Toprim domain CJD48_RS00805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD48_RS00805 PF00986 DNA gyrase B subunit, carboxyl terminus CJD48_RS00805 PF00204 DNA gyrase B CJD48_RS00810 PF05258 Dna[CI] antecedent, DciA CJD48_RS00815 PF02463 RecF/RecN/SMC N terminal domain CJD48_RS00820 PF02767 DNA polymerase III beta subunit, central domain CJD48_RS00820 PF00712 DNA polymerase III beta subunit, N-terminal domain CJD48_RS00820 PF02768 DNA polymerase III beta subunit, C-terminal domain CJD48_RS00825 PF08299 Bacterial dnaA protein helix-turn-helix CJD48_RS00825 PF00308 Bacterial dnaA protein CJD48_RS00830 PF00468 Ribosomal protein L34 CJD48_RS00835 PF00825 Ribonuclease P CJD48_RS00840 PF01809 Putative membrane protein insertion efficiency factor CJD48_RS00845 PF02096 60Kd inner membrane protein CJD48_RS00850 PF01424 R3H domain CJD48_RS00850 PF14804 Jag N-terminus CJD48_RS00855 PF02527 rRNA small subunit methyltransferase G CJD48_RS00860 PF13614 AAA domain CJD48_RS00865 PF02195 ParB-like nuclease domain CJD48_RS00865 PF17762 HTH domain found in ParB protein CJD48_RS00870 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD48_RS00885 PF00293 NUDIX domain CJD48_RS00890 PF01743 Poly A polymerase head domain CJD48_RS00890 PF12627 Probable RNA and SrmB- binding site of polymerase A CJD48_RS00890 PF13735 tRNA nucleotidyltransferase domain 2 putative CJD48_RS00900 PF08544 GHMP kinases C terminal CJD48_RS00900 PF00288 GHMP kinases N terminal domain CJD48_RS00905 PF00398 Ribosomal RNA adenine dimethylase CJD48_RS00910 PF03990 G5-linked-Ubiquitin-like domain CJD48_RS00910 PF07501 G5 domain CJD48_RS00910 PF06737 Transglycosylase-like domain CJD48_RS00925 PF00400 WD domain, G-beta repeat CJD48_RS00925 PF00069 Protein kinase domain CJD48_RS00935 PF00005 ABC transporter CJD48_RS00935 PF17912 MalK OB fold domain CJD48_RS00940 PF00665 Integrase core domain CJD48_RS00940 PF13936 Helix-turn-helix domain CJD48_RS00950 PF00746 LPXTG cell wall anchor motif CJD48_RS00950 PF17210 SdrD B-like domain CJD48_RS00950 PF17961 Bacterial Ig domain CJD48_RS00950 PF04650 YSIRK type signal peptide CJD48_RS00970 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJD48_RS00970 PF00588 SpoU rRNA Methylase family CJD48_RS00975 PF00690 Cation transporter/ATPase, N-terminus CJD48_RS00975 PF00689 Cation transporting ATPase, C-terminus CJD48_RS00980 PF16875 Glycosyl hydrolase family 36 N-terminal domain CJD48_RS00980 PF16874 Glycosyl hydrolase family 36 C-terminal domain CJD48_RS00985 PF00692 dUTPase CJD48_RS00990 PF00999 Sodium/hydrogen exchanger family CJD48_RS01000 PF11734 TilS substrate C-terminal domain CJD48_RS01000 PF14437 MafB19-like deaminase CJD48_RS01000 PF01171 PP-loop family CJD48_RS01005 PF00291 Pyridoxal-phosphate dependent enzyme CJD48_RS01005 PF13291 ACT domain CJD48_RS01010 PF02146 Sir2 family CJD48_RS01035 PF01636 Phosphotransferase enzyme family CJD48_RS01065 PF00881 Nitroreductase family CJD48_RS01075 PF00300 Histidine phosphatase superfamily (branch 1) CJD48_RS01085 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS01090 PF00245 Alkaline phosphatase CJD48_RS01095 PF00012 Hsp70 protein CJD48_RS01100 PF01025 GrpE CJD48_RS01105 PF01556 DnaJ C terminal domain CJD48_RS01105 PF00226 DnaJ domain CJD48_RS01110 PF13411 MerR HTH family regulatory protein CJD48_RS01115 PF13088 BNR repeat-like domain CJD48_RS01115 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase CJD48_RS01115 PF00754 F5/8 type C domain CJD48_RS01120 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase CJD48_RS01120 PF00754 F5/8 type C domain CJD48_RS01120 PF13088 BNR repeat-like domain CJD48_RS01125 PF13419 Haloacid dehalogenase-like hydrolase CJD48_RS01135 PF09335 SNARE associated Golgi protein CJD48_RS01140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJD48_RS01155 PF08264 Anticodon-binding domain of tRNA CJD48_RS01155 PF09334 tRNA synthetases class I (M) CJD48_RS01180 PF01026 TatD related DNase CJD48_RS01185 PF02705 K+ potassium transporter CJD48_RS01205 PF00005 ABC transporter CJD48_RS01235 PF05690 Thiazole biosynthesis protein ThiG CJD48_RS01270 PF00300 Histidine phosphatase superfamily (branch 1) CJD48_RS01270 PF00293 NUDIX domain CJD48_RS01275 PF02503 Polyphosphate kinase middle domain CJD48_RS01275 PF13090 Polyphosphate kinase C-terminal domain 2 CJD48_RS01275 PF17941 Polyphosphate kinase C-terminal domain 1 CJD48_RS01275 PF13089 Polyphosphate kinase N-terminal domain CJD48_RS01290 PF00437 Type II/IV secretion system protein CJD48_RS01320 PF00781 Diacylglycerol kinase catalytic domain CJD48_RS01325 PF12169 DNA polymerase III subunits gamma and tau domain III CJD48_RS01330 PF13662 Toprim domain CJD48_RS01330 PF02132 RecR protein CJD48_RS01335 PF00696 Amino acid kinase family CJD48_RS01335 PF01842 ACT domain CJD48_RS01335 PF13840 ACT domain CJD48_RS01340 PF00696 Amino acid kinase family CJD48_RS01340 PF01842 ACT domain CJD48_RS01340 PF13840 ACT domain CJD48_RS01345 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJD48_RS01345 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJD48_RS01375 PF00682 HMGL-like CJD48_RS01375 PF08502 LeuA allosteric (dimerisation) domain CJD48_RS01380 PF00905 Penicillin binding protein transpeptidase domain CJD48_RS01380 PF00912 Transglycosylase CJD48_RS01385 PF03275 UDP-galactopyranose mutase CJD48_RS01395 PF02225 PA domain CJD48_RS01395 PF00082 Subtilase family CJD48_RS01395 PF13860 FlgD Ig-like domain CJD48_RS01395 PF05922 Peptidase inhibitor I9 CJD48_RS01410 PF01131 DNA topoisomerase CJD48_RS01410 PF01751 Toprim domain CJD48_RS01410 PF13368 Topoisomerase C-terminal repeat CJD48_RS01415 PF02223 Thymidylate kinase CJD48_RS01420 PF12169 DNA polymerase III subunits gamma and tau domain III CJD48_RS01425 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS01430 PF00391 PEP-utilising enzyme, mobile domain CJD48_RS01430 PF02896 PEP-utilising enzyme, TIM barrel domain CJD48_RS01430 PF00381 PTS HPr component phosphorylation site CJD48_RS01430 PF05524 PEP-utilising enzyme, N-terminal CJD48_RS01430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD48_RS01435 PF00391 PEP-utilising enzyme, mobile domain CJD48_RS01435 PF02896 PEP-utilising enzyme, TIM barrel domain CJD48_RS01435 PF05524 PEP-utilising enzyme, N-terminal CJD48_RS01465 PF03239 Iron permease FTR1 family CJD48_RS01470 PF10634 Fe2+ transport protein CJD48_RS01485 PF02687 FtsX-like permease family CJD48_RS01485 PF12704 MacB-like periplasmic core domain CJD48_RS01490 PF00005 ABC transporter CJD48_RS01490 PF02687 FtsX-like permease family CJD48_RS01490 PF12704 MacB-like periplasmic core domain CJD48_RS01500 PF00392 Bacterial regulatory proteins, gntR family CJD48_RS01515 PF02378 Phosphotransferase system, EIIC CJD48_RS01520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD48_RS01530 PF00232 Glycosyl hydrolase family 1 CJD48_RS01590 PF00664 ABC transporter transmembrane region CJD48_RS01590 PF00005 ABC transporter CJD48_RS01595 PF00005 ABC transporter CJD48_RS01595 PF00664 ABC transporter transmembrane region CJD48_RS01615 PF03577 Peptidase family C69 CJD48_RS01625 PF00535 Glycosyl transferase family 2 CJD48_RS01630 PF00440 Bacterial regulatory proteins, tetR family CJD48_RS01640 PF00448 SRP54-type protein, GTPase domain CJD48_RS01640 PF02881 SRP54-type protein, helical bundle domain CJD48_RS01645 PF00909 Ammonium Transporter Family CJD48_RS01650 PF00543 Nitrogen regulatory protein P-II CJD48_RS01655 PF01966 HD domain CJD48_RS01655 PF01909 Nucleotidyltransferase domain CJD48_RS01655 PF08335 GlnD PII-uridylyltransferase CJD48_RS01665 PF03796 DnaB-like helicase C terminal domain CJD48_RS01665 PF00772 DnaB-like helicase N terminal domain CJD48_RS01670 PF08245 Mur ligase middle domain CJD48_RS01670 PF08353 Domain of unknown function (DUF1727) CJD48_RS01675 PF07685 CobB/CobQ-like glutamine amidotransferase domain CJD48_RS01685 PF03109 ABC1 family CJD48_RS01690 PF00403 Heavy-metal-associated domain CJD48_RS01695 PF02583 Metal-sensitive transcriptional repressor CJD48_RS01700 PF02646 RmuC family CJD48_RS01725 PF02686 Glu-tRNAGln amidotransferase C subunit CJD48_RS01730 PF01425 Amidase CJD48_RS01735 PF02934 GatB/GatE catalytic domain CJD48_RS01735 PF02637 GatB domain CJD48_RS01745 PF10611 Protein of unknown function (DUF2469) CJD48_RS01750 PF01593 Flavin containing amine oxidoreductase CJD48_RS01755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJD48_RS01755 PF07498 Rho termination factor, N-terminal domain CJD48_RS01755 PF07497 Rho termination factor, RNA-binding domain CJD48_RS01760 PF00155 Aminotransferase class I and II CJD48_RS01765 PF01037 Lrp/AsnC ligand binding domain CJD48_RS01770 PF01817 Chorismate mutase type II CJD48_RS01770 PF02153 Prephenate dehydrogenase CJD48_RS01780 PF00133 tRNA synthetases class I (I, L, M and V) CJD48_RS01780 PF08264 Anticodon-binding domain of tRNA CJD48_RS01785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD48_RS01790 PF00730 HhH-GPD superfamily base excision DNA repair protein CJD48_RS01790 PF10576 Iron-sulfur binding domain of endonuclease III CJD48_RS01790 PF00633 Helix-hairpin-helix motif CJD48_RS01795 PF00486 Transcriptional regulatory protein, C terminal CJD48_RS01805 PF02659 Putative manganese efflux pump CJD48_RS01810 PF00719 Inorganic pyrophosphatase CJD48_RS01815 PF11896 Domain of unknown function (DUF3416) CJD48_RS01815 PF00128 Alpha amylase, catalytic domain CJD48_RS01845 PF02899 Phage integrase, N-terminal SAM-like domain CJD48_RS01845 PF00589 Phage integrase family CJD48_RS01965 PF04204 Homoserine O-succinyltransferase CJD48_RS01970 PF00119 ATP synthase A chain CJD48_RS01975 PF00137 ATP synthase subunit C CJD48_RS01980 PF00430 ATP synthase B/B' CF(0) CJD48_RS01985 PF00213 ATP synthase delta (OSCP) subunit CJD48_RS01990 PF00306 ATP synthase alpha/beta chain, C terminal domain CJD48_RS01990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJD48_RS01990 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJD48_RS01995 PF00231 ATP synthase CJD48_RS02000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJD48_RS02000 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJD48_RS02005 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJD48_RS02010 PF01939 Endonuclease NucS CJD48_RS02015 PF13556 PucR C-terminal helix-turn-helix domain CJD48_RS02015 PF17853 GGDEF-like domain CJD48_RS02025 PF02237 Biotin protein ligase C terminal domain CJD48_RS02025 PF03099 Biotin/lipoate A/B protein ligase family CJD48_RS02025 PF08279 HTH domain CJD48_RS02030 PF02632 BioY family CJD48_RS02035 PF02785 Biotin carboxylase C-terminal domain CJD48_RS02035 PF00289 Biotin carboxylase, N-terminal domain CJD48_RS02035 PF00364 Biotin-requiring enzyme CJD48_RS02035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJD48_RS02040 PF01039 Carboxyl transferase domain CJD48_RS02050 PF01648 4'-phosphopantetheinyl transferase superfamily CJD48_RS02065 PF02838 Glycosyl hydrolase family 20, domain 2 CJD48_RS02065 PF00754 F5/8 type C domain CJD48_RS02065 PF00404 Dockerin type I domain CJD48_RS02065 PF07555 beta-N-acetylglucosaminidase CJD48_RS02075 PF00312 Ribosomal protein S15 CJD48_RS02080 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CJD48_RS02080 PF01138 3' exoribonuclease family, domain 1 CJD48_RS02080 PF00575 S1 RNA binding domain CJD48_RS02080 PF00013 KH domain CJD48_RS02095 PF04011 LemA family CJD48_RS02110 PF00268 Ribonucleotide reductase, small chain CJD48_RS02115 PF00317 Ribonucleotide reductase, all-alpha domain CJD48_RS02115 PF02867 Ribonucleotide reductase, barrel domain CJD48_RS02115 PF08343 Ribonucleotide reductase N-terminal CJD48_RS02120 PF07972 NrdI Flavodoxin like CJD48_RS02130 PF00248 Aldo/keto reductase family CJD48_RS02140 PF16325 Peptidase family U32 C-terminal domain CJD48_RS02140 PF01136 Peptidase family U32 CJD48_RS02145 PF02578 Multi-copper polyphenol oxidoreductase laccase CJD48_RS02150 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJD48_RS02155 PF01470 Pyroglutamyl peptidase CJD48_RS02165 PF03051 Peptidase C1-like family CJD48_RS02175 PF00793 DAHP synthetase I family CJD48_RS02190 PF00793 DAHP synthetase I family CJD48_RS02195 PF01048 Phosphorylase superfamily CJD48_RS02200 PF00512 His Kinase A (phospho-acceptor) domain CJD48_RS02200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD48_RS02205 PF00072 Response regulator receiver domain CJD48_RS02205 PF00486 Transcriptional regulatory protein, C terminal CJD48_RS02210 PF12849 PBP superfamily domain CJD48_RS02215 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS02220 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS02225 PF00005 ABC transporter CJD48_RS02235 PF00860 Permease family CJD48_RS02245 PF13859 BNR repeat-like domain CJD48_RS02250 PF13472 GDSL-like Lipase/Acylhydrolase family CJD48_RS02250 PF07859 alpha/beta hydrolase fold CJD48_RS02260 PF00466 Ribosomal protein L10 CJD48_RS02265 PF00542 Ribosomal protein L7/L12 C-terminal domain CJD48_RS02265 PF16320 Ribosomal protein L7/L12 dimerisation domain CJD48_RS02295 PF01812 5-formyltetrahydrofolate cyclo-ligase family CJD48_RS02310 PF00166 Chaperonin 10 Kd subunit CJD48_RS02350 PF00471 Ribosomal protein L33 CJD48_RS02355 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CJD48_RS02355 PF01565 FAD binding domain CJD48_RS02360 PF00037 4Fe-4S binding domain CJD48_RS02365 PF00155 Aminotransferase class I and II CJD48_RS02370 PF00817 impB/mucB/samB family CJD48_RS02370 PF11799 impB/mucB/samB family C-terminal domain CJD48_RS02370 PF11798 IMS family HHH motif CJD48_RS02385 PF01205 Uncharacterized protein family UPF0029 CJD48_RS02385 PF09186 Domain of unknown function (DUF1949) CJD48_RS02395 PF02446 4-alpha-glucanotransferase CJD48_RS02400 PF00572 Ribosomal protein L13 CJD48_RS02405 PF00380 Ribosomal protein S9/S16 CJD48_RS02410 PF00128 Alpha amylase, catalytic domain CJD48_RS02410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CJD48_RS02420 PF00465 Iron-containing alcohol dehydrogenase CJD48_RS02420 PF00171 Aldehyde dehydrogenase family CJD48_RS02425 PF03306 Alpha-acetolactate decarboxylase CJD48_RS02440 PF00338 Ribosomal protein S10p/S20e CJD48_RS02445 PF00297 Ribosomal protein L3 CJD48_RS02450 PF00573 Ribosomal protein L4/L1 family CJD48_RS02455 PF00276 Ribosomal protein L23 CJD48_RS02460 PF03947 Ribosomal Proteins L2, C-terminal domain CJD48_RS02460 PF00181 Ribosomal Proteins L2, RNA binding domain CJD48_RS02465 PF00203 Ribosomal protein S19 CJD48_RS02470 PF00237 Ribosomal protein L22p/L17e CJD48_RS02475 PF00189 Ribosomal protein S3, C-terminal domain CJD48_RS02475 PF07650 KH domain CJD48_RS02480 PF00252 Ribosomal protein L16p/L10e CJD48_RS02485 PF00831 Ribosomal L29 protein CJD48_RS02490 PF00366 Ribosomal protein S17 CJD48_RS02495 PF00238 Ribosomal protein L14p/L23e CJD48_RS02500 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CJD48_RS02500 PF00467 KOW motif CJD48_RS02505 PF00673 ribosomal L5P family C-terminus CJD48_RS02505 PF00281 Ribosomal protein L5 CJD48_RS02510 PF00253 Ribosomal protein S14p/S29e CJD48_RS02515 PF00410 Ribosomal protein S8 CJD48_RS02520 PF00347 Ribosomal protein L6 CJD48_RS02525 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CJD48_RS02530 PF00333 Ribosomal protein S5, N-terminal domain CJD48_RS02530 PF03719 Ribosomal protein S5, C-terminal domain CJD48_RS02535 PF00327 Ribosomal protein L30p/L7e CJD48_RS02540 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CJD48_RS02545 PF00344 SecY translocase CJD48_RS02555 PF01176 Translation initiation factor 1A / IF-1 CJD48_RS02560 PF00444 Ribosomal protein L36 CJD48_RS02565 PF00416 Ribosomal protein S13/S18 CJD48_RS02570 PF00411 Ribosomal protein S11 CJD48_RS02575 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CJD48_RS02575 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CJD48_RS02575 PF01000 RNA polymerase Rpb3/RpoA insert domain CJD48_RS02580 PF01196 Ribosomal protein L17 CJD48_RS02585 PF13333 Integrase core domain CJD48_RS02585 PF00665 Integrase core domain CJD48_RS02585 PF13276 HTH-like domain CJD48_RS02595 PF00728 Glycosyl hydrolase family 20, catalytic domain CJD48_RS02595 PF03173 Putative carbohydrate binding domain CJD48_RS02595 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CJD48_RS02595 PF02838 Glycosyl hydrolase family 20, domain 2 CJD48_RS02600 PF01416 tRNA pseudouridine synthase CJD48_RS02605 PF14403 Circularly permuted ATP-grasp type 2 CJD48_RS02630 PF13184 NusA-like KH domain CJD48_RS02630 PF08529 NusA N-terminal domain CJD48_RS02635 PF11987 Translation-initiation factor 2 CJD48_RS02635 PF04760 Translation initiation factor IF-2, N-terminal region CJD48_RS02635 PF00009 Elongation factor Tu GTP binding domain CJD48_RS02640 PF02033 Ribosome-binding factor A CJD48_RS02645 PF01509 TruB family pseudouridylate synthase (N terminal domain) CJD48_RS02645 PF09142 tRNA Pseudouridine synthase II, C terminal CJD48_RS02645 PF16198 tRNA pseudouridylate synthase B C-terminal domain CJD48_RS02650 PF01687 Riboflavin kinase CJD48_RS02650 PF06574 FAD synthetase CJD48_RS02655 PF18073 Rubredoxin metal binding domain CJD48_RS02670 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CJD48_RS02675 PF00075 RNase H CJD48_RS02680 PF00754 F5/8 type C domain CJD48_RS02680 PF00404 Dockerin type I domain CJD48_RS02680 PF07555 beta-N-acetylglucosaminidase CJD48_RS02680 PF02838 Glycosyl hydrolase family 20, domain 2 CJD48_RS02685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJD48_RS02685 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD48_RS02690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJD48_RS02690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJD48_RS02690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJD48_RS02690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJD48_RS02710 PF02378 Phosphotransferase system, EIIC CJD48_RS02710 PF00367 phosphotransferase system, EIIB CJD48_RS02710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJD48_RS02715 PF00874 PRD domain CJD48_RS02715 PF03123 CAT RNA binding domain CJD48_RS02720 PF02142 MGS-like domain CJD48_RS02720 PF00781 Diacylglycerol kinase catalytic domain CJD48_RS02725 PF00149 Calcineurin-like phosphoesterase CJD48_RS02725 PF00746 LPXTG cell wall anchor motif CJD48_RS02725 PF02872 5'-nucleotidase, C-terminal domain CJD48_RS02725 PF00565 Staphylococcal nuclease homologue CJD48_RS02730 PF02403 Seryl-tRNA synthetase N-terminal domain CJD48_RS02730 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJD48_RS02755 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CJD48_RS02755 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CJD48_RS02765 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CJD48_RS02770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJD48_RS02770 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CJD48_RS02775 PF00072 Response regulator receiver domain CJD48_RS02775 PF00196 Bacterial regulatory proteins, luxR family CJD48_RS02805 PF07690 Major Facilitator Superfamily CJD48_RS02815 PF01336 OB-fold nucleic acid binding domain CJD48_RS02815 PF00152 tRNA synthetases class II (D, K and N) CJD48_RS02820 PF01040 UbiA prenyltransferase family CJD48_RS02825 PF00300 Histidine phosphatase superfamily (branch 1) CJD48_RS02835 PF01895 PhoU domain CJD48_RS02840 PF00512 His Kinase A (phospho-acceptor) domain CJD48_RS02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD48_RS02850 PF00266 Aminotransferase class-V CJD48_RS02855 PF01476 LysM domain CJD48_RS02855 PF05257 CHAP domain CJD48_RS02860 PF00877 NlpC/P60 family CJD48_RS02865 PF00582 Universal stress protein family CJD48_RS02870 PF02566 OsmC-like protein CJD48_RS02875 PF00303 Thymidylate synthase CJD48_RS02880 PF00186 Dihydrofolate reductase CJD48_RS02885 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJD48_RS02890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJD48_RS02890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJD48_RS02895 PF05437 Branched-chain amino acid transport protein (AzlD) CJD48_RS02905 PF00005 ABC transporter CJD48_RS02915 PF12704 MacB-like periplasmic core domain CJD48_RS02915 PF02687 FtsX-like permease family CJD48_RS02935 PF00005 ABC transporter CJD48_RS02950 PF00072 Response regulator receiver domain CJD48_RS02950 PF00486 Transcriptional regulatory protein, C terminal CJD48_RS02955 PF00672 HAMP domain CJD48_RS02955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD48_RS02955 PF00512 His Kinase A (phospho-acceptor) domain CJD48_RS02960 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS02970 PF02929 Beta galactosidase small chain CJD48_RS02970 PF16353 Domain of unknown function(DUF4981) CJD48_RS02970 PF00703 Glycosyl hydrolases family 2 CJD48_RS02970 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CJD48_RS02970 PF02837 Glycosyl hydrolases family 2, sugar binding domain CJD48_RS02975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJD48_RS02995 PF02390 Putative methyltransferase CJD48_RS03000 PF16363 GDP-mannose 4,6 dehydratase CJD48_RS03025 PF00465 Iron-containing alcohol dehydrogenase CJD48_RS03030 PF00535 Glycosyl transferase family 2 CJD48_RS03045 PF00005 ABC transporter CJD48_RS03060 PF09179 TilS substrate binding domain CJD48_RS03060 PF01171 PP-loop family CJD48_RS03065 PF00156 Phosphoribosyl transferase domain CJD48_RS03070 PF17862 AAA+ lid domain CJD48_RS03070 PF00004 ATPase family associated with various cellular activities (AAA) CJD48_RS03070 PF01434 Peptidase family M41 CJD48_RS03075 PF01227 GTP cyclohydrolase I CJD48_RS03080 PF00809 Pterin binding enzyme CJD48_RS03085 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CJD48_RS03105 PF12848 ABC transporter CJD48_RS03105 PF00005 ABC transporter CJD48_RS03135 PF01470 Pyroglutamyl peptidase CJD48_RS03170 PF07690 Major Facilitator Superfamily CJD48_RS03175 PF00005 ABC transporter CJD48_RS03175 PF16326 ABC transporter C-terminal domain CJD48_RS03180 PF00480 ROK family CJD48_RS03195 PF01053 Cys/Met metabolism PLP-dependent enzyme CJD48_RS03205 PF01925 Sulfite exporter TauE/SafE CJD48_RS03210 PF02687 FtsX-like permease family CJD48_RS03210 PF12704 MacB-like periplasmic core domain CJD48_RS03225 PF00271 Helicase conserved C-terminal domain CJD48_RS03225 PF00270 DEAD/DEAH box helicase CJD48_RS03240 PF04229 GrpB protein CJD48_RS03255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJD48_RS03255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJD48_RS03260 PF06800 Sugar transport protein CJD48_RS03275 PF01197 Ribosomal protein L31 CJD48_RS03280 PF03462 PCRF domain CJD48_RS03280 PF00472 RF-1 domain CJD48_RS03285 PF17827 PrmC N-terminal domain CJD48_RS03295 PF01300 Telomere recombination CJD48_RS03300 PF00953 Glycosyl transferase family 4 CJD48_RS03305 PF00478 IMP dehydrogenase / GMP reductase domain CJD48_RS03305 PF00571 CBS domain CJD48_RS03310 PF00128 Alpha amylase, catalytic domain CJD48_RS03320 PF07689 KaiB domain CJD48_RS03320 PF00512 His Kinase A (phospho-acceptor) domain CJD48_RS03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD48_RS03325 PF00929 Exonuclease CJD48_RS03335 PF14493 Helix-turn-helix domain CJD48_RS03335 PF05970 PIF1-like helicase CJD48_RS03345 PF03129 Anticodon binding domain CJD48_RS03345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJD48_RS03345 PF04073 Aminoacyl-tRNA editing domain CJD48_RS03360 PF05649 Peptidase family M13 CJD48_RS03360 PF01431 Peptidase family M13 CJD48_RS03370 PF00557 Metallopeptidase family M24 CJD48_RS03375 PF00285 Citrate synthase, C-terminal domain CJD48_RS03380 PF11490 DNA polymerase III polC-type N-terminus II CJD48_RS03380 PF00929 Exonuclease CJD48_RS03380 PF02811 PHP domain CJD48_RS03380 PF14579 Helix-hairpin-helix motif CJD48_RS03380 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJD48_RS03380 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJD48_RS03385 PF00248 Aldo/keto reductase family CJD48_RS03405 PF00005 ABC transporter CJD48_RS03405 PF02687 FtsX-like permease family CJD48_RS03405 PF12704 MacB-like periplasmic core domain CJD48_RS03410 PF02595 Glycerate kinase family CJD48_RS03415 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD48_RS03415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJD48_RS03420 PF01053 Cys/Met metabolism PLP-dependent enzyme CJD48_RS03425 PF01053 Cys/Met metabolism PLP-dependent enzyme CJD48_RS03430 PF01145 SPFH domain / Band 7 family CJD48_RS03435 PF00171 Aldehyde dehydrogenase family CJD48_RS03440 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CJD48_RS03445 PF00133 tRNA synthetases class I (I, L, M and V) CJD48_RS03445 PF08264 Anticodon-binding domain of tRNA CJD48_RS03460 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS03465 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS03470 PF02449 Beta-galactosidase CJD48_RS03470 PF08533 Beta-galactosidase C-terminal domain CJD48_RS03470 PF08532 Beta-galactosidase trimerisation domain CJD48_RS03485 PF03309 Type III pantothenate kinase CJD48_RS03490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD48_RS03495 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS03500 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS03505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD48_RS03505 PF00005 ABC transporter CJD48_RS03510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD48_RS03510 PF00005 ABC transporter CJD48_RS03515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJD48_RS03515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJD48_RS03550 PF00291 Pyridoxal-phosphate dependent enzyme CJD48_RS03550 PF00571 CBS domain CJD48_RS03555 PF01053 Cys/Met metabolism PLP-dependent enzyme CJD48_RS03560 PF00271 Helicase conserved C-terminal domain CJD48_RS03560 PF16124 RecQ zinc-binding CJD48_RS03560 PF00270 DEAD/DEAH box helicase CJD48_RS03560 PF00570 HRDC domain CJD48_RS03560 PF09382 RQC domain CJD48_RS03565 PF02664 S-Ribosylhomocysteinase (LuxS) CJD48_RS03580 PF13520 Amino acid permease CJD48_RS03585 PF01168 Alanine racemase, N-terminal domain CJD48_RS03585 PF00842 Alanine racemase, C-terminal domain CJD48_RS03590 PF01966 HD domain CJD48_RS03590 PF13286 Phosphohydrolase-associated domain CJD48_RS03595 PF10410 DnaB-helicase binding domain of primase CJD48_RS03595 PF01807 CHC2 zinc finger CJD48_RS03595 PF08275 DNA primase catalytic core, N-terminal domain CJD48_RS03595 PF08278 DNA primase DnaG DnaB-binding CJD48_RS03595 PF13662 Toprim domain CJD48_RS03600 PF01380 SIS domain CJD48_RS03605 PF17191 RecG wedge domain CJD48_RS03605 PF13749 Putative ATP-dependent DNA helicase recG C-terminal CJD48_RS03605 PF00270 DEAD/DEAH box helicase CJD48_RS03625 PF02779 Transketolase, pyrimidine binding domain CJD48_RS03625 PF02780 Transketolase, C-terminal domain CJD48_RS03625 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CJD48_RS03635 PF00731 AIR carboxylase CJD48_RS03640 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CJD48_RS03640 PF02222 ATP-grasp domain CJD48_RS03645 PF01475 Ferric uptake regulator family CJD48_RS03660 PF03773 Predicted permease CJD48_RS03665 PF01783 Ribosomal L32p protein family CJD48_RS03670 PF00444 Ribosomal protein L36 CJD48_RS03675 PF01197 Ribosomal protein L31 CJD48_RS03680 PF00253 Ribosomal protein S14p/S29e CJD48_RS03685 PF00830 Ribosomal L28 family CJD48_RS03700 PF09924 Uncharacterised conserved protein (DUF2156) CJD48_RS03705 PF00756 Putative esterase CJD48_RS03710 PF00884 Sulfatase CJD48_RS03715 PF02843 Phosphoribosylglycinamide synthetase, C domain CJD48_RS03715 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CJD48_RS03715 PF02844 Phosphoribosylglycinamide synthetase, N domain CJD48_RS03720 PF00586 AIR synthase related protein, N-terminal domain CJD48_RS03720 PF02769 AIR synthase related protein, C-terminal domain CJD48_RS03725 PF13537 Glutamine amidotransferase domain CJD48_RS03725 PF00156 Phosphoribosyl transferase domain CJD48_RS03730 PF00817 impB/mucB/samB family CJD48_RS03730 PF11799 impB/mucB/samB family C-terminal domain CJD48_RS03730 PF11798 IMS family HHH motif CJD48_RS03770 PF02769 AIR synthase related protein, C-terminal domain CJD48_RS03770 PF00586 AIR synthase related protein, N-terminal domain CJD48_RS03770 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CJD48_RS03775 PF01259 SAICAR synthetase CJD48_RS03780 PF02222 ATP-grasp domain CJD48_RS03785 PF13229 Right handed beta helix region CJD48_RS03785 PF12708 Pectate lyase superfamily protein CJD48_RS03795 PF01053 Cys/Met metabolism PLP-dependent enzyme CJD48_RS03805 PF00164 Ribosomal protein S12/S23 CJD48_RS03810 PF00177 Ribosomal protein S7p/S5e CJD48_RS03815 PF00009 Elongation factor Tu GTP binding domain CJD48_RS03815 PF03144 Elongation factor Tu domain 2 CJD48_RS03815 PF00679 Elongation factor G C-terminus CJD48_RS03815 PF03764 Elongation factor G, domain IV CJD48_RS03815 PF14492 Elongation Factor G, domain II CJD48_RS03820 PF03143 Elongation factor Tu C-terminal domain CJD48_RS03820 PF00009 Elongation factor Tu GTP binding domain CJD48_RS03820 PF03144 Elongation factor Tu domain 2 CJD48_RS03840 PF09285 Elongation factor P, C-terminal CJD48_RS03840 PF01132 Elongation factor P (EF-P) OB domain CJD48_RS03840 PF08207 Elongation factor P (EF-P) KOW-like domain CJD48_RS03845 PF01029 NusB family CJD48_RS03850 PF00117 Glutamine amidotransferase class-I CJD48_RS03850 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CJD48_RS03855 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJD48_RS03855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJD48_RS03855 PF02142 MGS-like domain CJD48_RS03860 PF00625 Guanylate kinase CJD48_RS03870 PF00196 Bacterial regulatory proteins, luxR family CJD48_RS03870 PF00072 Response regulator receiver domain CJD48_RS03885 PF01027 Inhibitor of apoptosis-promoting Bax1 CJD48_RS03895 PF04607 Region found in RelA / SpoT proteins CJD48_RS03900 PF00919 Uncharacterized protein family UPF0004 CJD48_RS03900 PF04055 Radical SAM superfamily CJD48_RS03915 PF01580 FtsK/SpoIIIE family CJD48_RS03915 PF09397 Ftsk gamma domain CJD48_RS03915 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CJD48_RS03915 PF17854 FtsK alpha domain CJD48_RS03920 PF01066 CDP-alcohol phosphatidyltransferase CJD48_RS03925 PF18146 Damage-inducible protein CinA KH domain CJD48_RS03925 PF00994 Probable molybdopterin binding domain CJD48_RS03925 PF02464 Competence-damaged protein CJD48_RS03940 PF00154 recA bacterial DNA recombination protein CJD48_RS03945 PF02631 RecX family CJD48_RS03960 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CJD48_RS03960 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CJD48_RS03965 PF07517 SecA DEAD-like domain CJD48_RS03965 PF02810 SEC-C motif CJD48_RS03965 PF01043 SecA preprotein cross-linking domain CJD48_RS03965 PF07516 SecA Wing and Scaffold domain CJD48_RS03970 PF00591 Glycosyl transferase family, a/b domain CJD48_RS03970 PF02885 Glycosyl transferase family, helical bundle domain CJD48_RS03980 PF01553 Acyltransferase CJD48_RS03985 PF00069 Protein kinase domain CJD48_RS03985 PF03793 PASTA domain CJD48_RS03990 PF00348 Polyprenyl synthetase CJD48_RS04000 PF00140 Sigma-70 factor, region 1.2 CJD48_RS04000 PF04545 Sigma-70, region 4 CJD48_RS04000 PF04542 Sigma-70 region 2 CJD48_RS04000 PF04539 Sigma-70 region 3 CJD48_RS04005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD48_RS04005 PF00204 DNA gyrase B CJD48_RS04005 PF01751 Toprim domain CJD48_RS04005 PF00986 DNA gyrase B subunit, carboxyl terminus CJD48_RS04025 PF13443 Cro/C1-type HTH DNA-binding domain CJD48_RS04030 PF08494 DEAD/H associated CJD48_RS04030 PF00271 Helicase conserved C-terminal domain CJD48_RS04030 PF00270 DEAD/DEAH box helicase CJD48_RS04035 PF00521 DNA gyrase/topoisomerase IV, subunit A CJD48_RS04035 PF03989 DNA gyrase C-terminal domain, beta-propeller CJD48_RS04055 PF00692 dUTPase CJD48_RS04060 PF13291 ACT domain CJD48_RS04060 PF04607 Region found in RelA / SpoT proteins CJD48_RS04060 PF02824 TGS domain CJD48_RS04110 PF02661 Fic/DOC family CJD48_RS04110 PF17841 BID domain of Bartonella effector protein (Bep) CJD48_RS04130 PF12787 EcsC protein family CJD48_RS04170 PF05257 CHAP domain CJD48_RS04170 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJD48_RS04235 PF03432 Relaxase/Mobilisation nuclease domain CJD48_RS04270 PF01751 Toprim domain CJD48_RS04270 PF01131 DNA topoisomerase CJD48_RS04305 PF10609 NUBPL iron-transfer P-loop NTPase CJD48_RS04340 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJD48_RS04350 PF00005 ABC transporter CJD48_RS04350 PF09383 NIL domain CJD48_RS04355 PF01546 Peptidase family M20/M25/M40 CJD48_RS04355 PF07687 Peptidase dimerisation domain CJD48_RS04360 PF00795 Carbon-nitrogen hydrolase CJD48_RS04360 PF02540 NAD synthase CJD48_RS04370 PF02901 Pyruvate formate lyase-like CJD48_RS04370 PF01228 Glycine radical CJD48_RS04375 PF04055 Radical SAM superfamily CJD48_RS04390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJD48_RS04390 PF05698 Bacterial trigger factor protein (TF) C-terminus CJD48_RS04390 PF05697 Bacterial trigger factor protein (TF) CJD48_RS04400 PF00574 Clp protease CJD48_RS04405 PF00574 Clp protease CJD48_RS04410 PF07724 AAA domain (Cdc48 subfamily) CJD48_RS04410 PF06689 ClpX C4-type zinc finger CJD48_RS04410 PF10431 C-terminal, D2-small domain, of ClpB protein CJD48_RS04425 PF00155 Aminotransferase class I and II CJD48_RS04430 PF06965 Na+/H+ antiporter 1 CJD48_RS04435 PF03641 Possible lysine decarboxylase CJD48_RS04445 PF13085 2Fe-2S iron-sulfur cluster binding domain CJD48_RS04450 PF02021 Uncharacterised protein family UPF0102 CJD48_RS04455 PF01078 Magnesium chelatase, subunit ChlI CJD48_RS04455 PF13335 Magnesium chelatase, subunit ChlI C-terminal CJD48_RS04460 PF17782 DprA winged helix domain CJD48_RS04460 PF02481 DNA recombination-mediator protein A CJD48_RS04465 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJD48_RS04465 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJD48_RS04470 PF02910 Fumarate reductase flavoprotein C-term CJD48_RS04470 PF00890 FAD binding domain CJD48_RS04485 PF01053 Cys/Met metabolism PLP-dependent enzyme CJD48_RS04515 PF00005 ABC transporter CJD48_RS04520 PF12704 MacB-like periplasmic core domain CJD48_RS04520 PF02687 FtsX-like permease family CJD48_RS04520 PF00005 ABC transporter CJD48_RS04525 PF01569 PAP2 superfamily CJD48_RS04530 PF00196 Bacterial regulatory proteins, luxR family CJD48_RS04530 PF00072 Response regulator receiver domain CJD48_RS04550 PF01112 Asparaginase CJD48_RS04560 PF03180 NLPA lipoprotein CJD48_RS04570 PF02779 Transketolase, pyrimidine binding domain CJD48_RS04570 PF02780 Transketolase, C-terminal domain CJD48_RS04570 PF00364 Biotin-requiring enzyme CJD48_RS04575 PF00005 ABC transporter CJD48_RS04575 PF09383 NIL domain CJD48_RS04580 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS04585 PF00155 Aminotransferase class I and II CJD48_RS04590 PF01926 50S ribosome-binding GTPase CJD48_RS04590 PF06071 Protein of unknown function (DUF933) CJD48_RS04835 PF02661 Fic/DOC family CJD48_RS04835 PF13784 Fic/DOC family N-terminal CJD48_RS04900 PF01327 Polypeptide deformylase CJD48_RS04925 PF00535 Glycosyl transferase family 2 CJD48_RS04925 PF01501 Glycosyl transferase family 8 CJD48_RS04935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD48_RS04935 PF03466 LysR substrate binding domain CJD48_RS04940 PF03601 Conserved hypothetical protein 698 CJD48_RS04955 PF00860 Permease family CJD48_RS04970 PF03649 Uncharacterised protein family (UPF0014) CJD48_RS04985 PF01409 tRNA synthetases class II core domain (F) CJD48_RS04985 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CJD48_RS04990 PF03147 Ferredoxin-fold anticodon binding domain CJD48_RS04990 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CJD48_RS04990 PF03484 tRNA synthetase B5 domain CJD48_RS04990 PF01588 Putative tRNA binding domain CJD48_RS04990 PF03483 B3/4 domain CJD48_RS05005 PF01960 ArgJ family CJD48_RS05010 PF00696 Amino acid kinase family CJD48_RS05015 PF00202 Aminotransferase class-III CJD48_RS05020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJD48_RS05020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJD48_RS05025 PF02863 Arginine repressor, C-terminal domain CJD48_RS05025 PF01316 Arginine repressor, DNA binding domain CJD48_RS05030 PF00764 Arginosuccinate synthase CJD48_RS05040 PF02899 Phage integrase, N-terminal SAM-like domain CJD48_RS05040 PF00589 Phage integrase family CJD48_RS05055 PF12161 HsdM N-terminal domain CJD48_RS05055 PF02384 N-6 DNA Methylase CJD48_RS05075 PF18766 SWI2/SNF2 ATPase CJD48_RS05075 PF12008 Type I restriction and modification enzyme - subunit R C terminal CJD48_RS05075 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CJD48_RS05080 PF00206 Lyase CJD48_RS05080 PF14698 Argininosuccinate lyase C-terminal CJD48_RS05095 PF01479 S4 domain CJD48_RS05095 PF00579 tRNA synthetases class I (W and Y) CJD48_RS05105 PF13344 Haloacid dehalogenase-like hydrolase CJD48_RS05110 PF01728 FtsJ-like methyltransferase CJD48_RS05110 PF01479 S4 domain CJD48_RS05120 PF02254 TrkA-N domain CJD48_RS05120 PF02080 TrkA-C domain CJD48_RS05125 PF02386 Cation transport protein CJD48_RS05130 PF01513 ATP-NAD kinase CJD48_RS05135 PF02463 RecF/RecN/SMC N terminal domain CJD48_RS05140 PF13419 Haloacid dehalogenase-like hydrolase CJD48_RS05145 PF00392 Bacterial regulatory proteins, gntR family CJD48_RS05150 PF00005 ABC transporter CJD48_RS05165 PF14821 Threonine synthase N terminus CJD48_RS05165 PF00291 Pyridoxal-phosphate dependent enzyme CJD48_RS05170 PF00171 Aldehyde dehydrogenase family CJD48_RS05180 PF01467 Cytidylyltransferase-like CJD48_RS05185 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJD48_RS05185 PF14572 Phosphoribosyl synthetase-associated domain CJD48_RS05195 PF12804 MobA-like NTP transferase domain CJD48_RS05195 PF00132 Bacterial transferase hexapeptide (six repeats) CJD48_RS05215 PF00128 Alpha amylase, catalytic domain CJD48_RS05215 PF02903 Alpha amylase, N-terminal ig-like domain CJD48_RS05215 PF16657 Maltogenic Amylase, C-terminal domain CJD48_RS05255 PF02525 Flavodoxin-like fold CJD48_RS05300 PF02586 SOS response associated peptidase (SRAP) CJD48_RS05330 PF00293 NUDIX domain CJD48_RS05350 PF04343 Protein of unknown function, DUF488 CJD48_RS05355 PF01261 Xylose isomerase-like TIM barrel CJD48_RS05380 PF00300 Histidine phosphatase superfamily (branch 1) CJD48_RS05385 PF01544 CorA-like Mg2+ transporter protein CJD48_RS05390 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD48_RS05395 PF09334 tRNA synthetases class I (M) CJD48_RS05395 PF13603 Leucyl-tRNA synthetase, Domain 2 CJD48_RS05395 PF08264 Anticodon-binding domain of tRNA CJD48_RS05415 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CJD48_RS05420 PF00814 Glycoprotease family CJD48_RS05425 PF00583 Acetyltransferase (GNAT) family CJD48_RS05430 PF00814 Glycoprotease family CJD48_RS05445 PF00501 AMP-binding enzyme CJD48_RS05455 PF00180 Isocitrate/isopropylmalate dehydrogenase CJD48_RS05460 PF00478 IMP dehydrogenase / GMP reductase domain CJD48_RS05470 PF00501 AMP-binding enzyme CJD48_RS05475 PF01327 Polypeptide deformylase CJD48_RS05480 PF00318 Ribosomal protein S2 CJD48_RS05485 PF00889 Elongation factor TS CJD48_RS05500 PF00696 Amino acid kinase family CJD48_RS05505 PF01765 Ribosome recycling factor CJD48_RS05515 PF04055 Radical SAM superfamily CJD48_RS05520 PF00977 Histidine biosynthesis protein CJD48_RS05525 PF01502 Phosphoribosyl-AMP cyclohydrolase CJD48_RS05530 PF00425 chorismate binding enzyme CJD48_RS05530 PF04715 Anthranilate synthase component I, N terminal region CJD48_RS05540 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS05545 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS05550 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain CJD48_RS05550 PF17386 Lacto-N-biose phosphorylase C-terminal domain CJD48_RS05550 PF17385 Lacto-N-biose phosphorylase central domain CJD48_RS05555 PF00480 ROK family CJD48_RS05560 PF00480 ROK family CJD48_RS05565 PF01636 Phosphotransferase enzyme family CJD48_RS05570 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CJD48_RS05570 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CJD48_RS05575 PF16363 GDP-mannose 4,6 dehydratase CJD48_RS05585 PF02557 D-alanyl-D-alanine carboxypeptidase CJD48_RS05590 PF00672 HAMP domain CJD48_RS05590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD48_RS05590 PF00512 His Kinase A (phospho-acceptor) domain CJD48_RS05595 PF00486 Transcriptional regulatory protein, C terminal CJD48_RS05595 PF00072 Response regulator receiver domain CJD48_RS05600 PF02687 FtsX-like permease family CJD48_RS05600 PF12704 MacB-like periplasmic core domain CJD48_RS05600 PF00005 ABC transporter CJD48_RS05610 PF00005 ABC transporter CJD48_RS05610 PF17755 UvrA DNA-binding domain CJD48_RS05610 PF17760 UvrA interaction domain CJD48_RS05615 PF01541 GIY-YIG catalytic domain CJD48_RS05615 PF08459 UvrC Helix-hairpin-helix N-terminal CJD48_RS05615 PF02151 UvrB/uvrC motif CJD48_RS05620 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CJD48_RS05620 PF01488 Shikimate / quinate 5-dehydrogenase CJD48_RS05620 PF08501 Shikimate dehydrogenase substrate binding domain CJD48_RS05625 PF03668 P-loop ATPase protein family CJD48_RS05630 PF14527 WhiA LAGLIDADG-like domain CJD48_RS05630 PF02650 WhiA C-terminal HTH domain CJD48_RS05630 PF10298 WhiA N-terminal LAGLIDADG-like domain CJD48_RS05635 PF00162 Phosphoglycerate kinase CJD48_RS05640 PF00121 Triosephosphate isomerase CJD48_RS05645 PF03840 Preprotein translocase SecG subunit CJD48_RS05650 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJD48_RS05650 PF00056 lactate/malate dehydrogenase, NAD binding domain CJD48_RS05670 PF05525 Branched-chain amino acid transport protein CJD48_RS05675 PF06912 Protein of unknown function (DUF1275) CJD48_RS05680 PF00923 Transaldolase/Fructose-6-phosphate aldolase CJD48_RS05685 PF02779 Transketolase, pyrimidine binding domain CJD48_RS05685 PF02780 Transketolase, C-terminal domain CJD48_RS05685 PF00456 Transketolase, thiamine diphosphate binding domain CJD48_RS05690 PF01628 HrcA protein C terminal domain CJD48_RS05695 PF00684 DnaJ central domain CJD48_RS05695 PF01556 DnaJ C terminal domain CJD48_RS05695 PF00226 DnaJ domain CJD48_RS05705 PF02673 Bacitracin resistance protein BacA CJD48_RS05745 PF00375 Sodium:dicarboxylate symporter family CJD48_RS05750 PF03129 Anticodon binding domain CJD48_RS05750 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJD48_RS05750 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJD48_RS05755 PF02838 Glycosyl hydrolase family 20, domain 2 CJD48_RS05755 PF00728 Glycosyl hydrolase family 20, catalytic domain CJD48_RS05760 PF01709 Transcriptional regulator CJD48_RS05765 PF02075 Crossover junction endodeoxyribonuclease RuvC CJD48_RS05770 PF07499 RuvA, C-terminal domain CJD48_RS05770 PF01330 RuvA N terminal domain CJD48_RS05775 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJD48_RS05775 PF17864 RuvB AAA lid domain CJD48_RS05775 PF05491 RuvB C-terminal winged helix domain CJD48_RS05780 PF02699 Preprotein translocase subunit CJD48_RS05785 PF00156 Phosphoribosyl transferase domain CJD48_RS05790 PF00549 CoA-ligase CJD48_RS05790 PF08442 ATP-grasp domain CJD48_RS05795 PF00549 CoA-ligase CJD48_RS05795 PF02629 CoA binding domain CJD48_RS05805 PF01808 AICARFT/IMPCHase bienzyme CJD48_RS05805 PF02142 MGS-like domain CJD48_RS05815 PF00230 Major intrinsic protein CJD48_RS05820 PF00849 RNA pseudouridylate synthase CJD48_RS05820 PF01479 S4 domain CJD48_RS05825 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CJD48_RS05825 PF01926 50S ribosome-binding GTPase CJD48_RS05830 PF00291 Pyridoxal-phosphate dependent enzyme CJD48_RS05835 PF00290 Tryptophan synthase alpha chain CJD48_RS05840 PF01790 Prolipoprotein diacylglyceryl transferase CJD48_RS05845 PF00834 Ribulose-phosphate 3 epimerase family CJD48_RS05850 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CJD48_RS05855 PF01634 ATP phosphoribosyltransferase CJD48_RS05855 PF08029 HisG, C-terminal domain CJD48_RS05860 PF01066 CDP-alcohol phosphatidyltransferase CJD48_RS05870 PF06947 Protein of unknown function (DUF1290) CJD48_RS05880 PF00498 FHA domain CJD48_RS05885 PF13411 MerR HTH family regulatory protein CJD48_RS05925 PF13419 Haloacid dehalogenase-like hydrolase CJD48_RS05930 PF13397 RNA polymerase-binding protein CJD48_RS05935 PF08148 DSHCT (NUC185) domain CJD48_RS05935 PF00271 Helicase conserved C-terminal domain CJD48_RS05935 PF00270 DEAD/DEAH box helicase CJD48_RS05960 PF00248 Aldo/keto reductase family CJD48_RS05970 PF01256 Carbohydrate kinase CJD48_RS05970 PF03853 YjeF-related protein N-terminus CJD48_RS05980 PF03466 LysR substrate binding domain CJD48_RS05980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD48_RS05990 PF00440 Bacterial regulatory proteins, tetR family CJD48_RS06035 PF00106 short chain dehydrogenase CJD48_RS06045 PF17755 UvrA DNA-binding domain CJD48_RS06045 PF17760 UvrA interaction domain CJD48_RS06045 PF00005 ABC transporter CJD48_RS06065 PF00107 Zinc-binding dehydrogenase CJD48_RS06065 PF08240 Alcohol dehydrogenase GroES-like domain CJD48_RS06075 PF00156 Phosphoribosyl transferase domain CJD48_RS06080 PF01180 Dihydroorotate dehydrogenase CJD48_RS06085 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CJD48_RS06090 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJD48_RS06095 PF01979 Amidohydrolase family CJD48_RS06100 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CJD48_RS06100 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CJD48_RS06105 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJD48_RS06105 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJD48_RS06110 PF03710 Glutamate-ammonia ligase adenylyltransferase CJD48_RS06110 PF08335 GlnD PII-uridylyltransferase CJD48_RS06120 PF02219 Methylenetetrahydrofolate reductase CJD48_RS06125 PF08267 Cobalamin-independent synthase, N-terminal domain CJD48_RS06125 PF01717 Cobalamin-independent synthase, Catalytic domain CJD48_RS06135 PF08704 tRNA methyltransferase complex GCD14 subunit CJD48_RS06140 PF12146 Serine aminopeptidase, S33 CJD48_RS06150 PF01695 IstB-like ATP binding protein CJD48_RS06155 PF00665 Integrase core domain CJD48_RS06160 PF00892 EamA-like transporter family CJD48_RS06170 PF13361 UvrD-like helicase C-terminal domain CJD48_RS06170 PF00580 UvrD/REP helicase N-terminal domain CJD48_RS06200 PF00270 DEAD/DEAH box helicase CJD48_RS06200 PF17191 RecG wedge domain CJD48_RS06200 PF13749 Putative ATP-dependent DNA helicase recG C-terminal CJD48_RS06225 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CJD48_RS06235 PF00795 Carbon-nitrogen hydrolase CJD48_RS06240 PF00005 ABC transporter CJD48_RS06245 PF00534 Glycosyl transferases group 1 CJD48_RS06245 PF13439 Glycosyltransferase Family 4 CJD48_RS06255 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJD48_RS06255 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD48_RS06260 PF04898 Glutamate synthase central domain CJD48_RS06260 PF01645 Conserved region in glutamate synthase CJD48_RS06260 PF01493 GXGXG motif CJD48_RS06260 PF00310 Glutamine amidotransferases class-II CJD48_RS06265 PF00009 Elongation factor Tu GTP binding domain CJD48_RS06265 PF03764 Elongation factor G, domain IV CJD48_RS06265 PF14492 Elongation Factor G, domain II CJD48_RS06265 PF00679 Elongation factor G C-terminus CJD48_RS06270 PF00155 Aminotransferase class I and II CJD48_RS06275 PF04055 Radical SAM superfamily CJD48_RS06280 PF06421 GTP-binding protein LepA C-terminus CJD48_RS06280 PF00009 Elongation factor Tu GTP binding domain CJD48_RS06280 PF00679 Elongation factor G C-terminus CJD48_RS06285 PF01649 Ribosomal protein S20 CJD48_RS06290 PF03458 UPF0126 domain CJD48_RS06305 PF01063 Amino-transferase class IV CJD48_RS06310 PF01386 Ribosomal L25p family CJD48_RS06310 PF14693 Ribosomal protein TL5, C-terminal domain CJD48_RS06315 PF12146 Serine aminopeptidase, S33 CJD48_RS06320 PF02233 NAD(P) transhydrogenase beta subunit CJD48_RS06325 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CJD48_RS06330 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJD48_RS06330 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CJD48_RS06335 PF00501 AMP-binding enzyme CJD48_RS06340 PF07650 KH domain CJD48_RS06340 PF01926 50S ribosome-binding GTPase CJD48_RS06345 PF03471 Transporter associated domain CJD48_RS06345 PF01595 Cyclin M transmembrane N-terminal domain CJD48_RS06345 PF00571 CBS domain CJD48_RS06350 PF02130 Uncharacterized protein family UPF0054 CJD48_RS06355 PF02562 PhoH-like protein CJD48_RS06360 PF01230 HIT domain CJD48_RS06365 PF04452 RNA methyltransferase CJD48_RS06375 PF00588 SpoU rRNA Methylase family CJD48_RS06385 PF01883 Iron-sulfur cluster assembly protein CJD48_RS06395 PF00266 Aminotransferase class-V CJD48_RS06400 PF00005 ABC transporter CJD48_RS06405 PF01458 Uncharacterized protein family (UPF0051) CJD48_RS06410 PF01458 Uncharacterized protein family (UPF0051) CJD48_RS06415 PF06418 CTP synthase N-terminus CJD48_RS06415 PF00117 Glutamine amidotransferase class-I CJD48_RS06425 PF00072 Response regulator receiver domain CJD48_RS06425 PF00196 Bacterial regulatory proteins, luxR family CJD48_RS06435 PF01220 Dehydroquinase class II CJD48_RS06440 PF01761 3-dehydroquinate synthase CJD48_RS06440 PF01202 Shikimate kinase CJD48_RS06445 PF01264 Chorismate synthase CJD48_RS06460 PF03652 Holliday junction resolvase CJD48_RS06465 PF02272 DHHA1 domain CJD48_RS06465 PF01411 tRNA synthetases class II (A) CJD48_RS06465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJD48_RS06485 PF01757 Acyltransferase family CJD48_RS06490 PF00163 Ribosomal protein S4/S9 N-terminal domain CJD48_RS06490 PF01479 S4 domain CJD48_RS06495 PF02687 FtsX-like permease family CJD48_RS06495 PF00005 ABC transporter CJD48_RS06495 PF12704 MacB-like periplasmic core domain CJD48_RS06510 PF00580 UvrD/REP helicase N-terminal domain CJD48_RS06510 PF13361 UvrD-like helicase C-terminal domain CJD48_RS06515 PF01757 Acyltransferase family CJD48_RS06520 PF00156 Phosphoribosyl transferase domain CJD48_RS06525 PF00860 Permease family CJD48_RS06535 PF01380 SIS domain CJD48_RS06550 PF00857 Isochorismatase family CJD48_RS06570 PF13651 Adenine-specific methyltransferase EcoRI CJD48_RS06575 PF13651 Adenine-specific methyltransferase EcoRI CJD48_RS06585 PF03389 MobA/MobL family CJD48_RS06600 PF13936 Helix-turn-helix domain CJD48_RS06600 PF00665 Integrase core domain CJD48_RS06605 PF13749 Putative ATP-dependent DNA helicase recG C-terminal CJD48_RS06605 PF00270 DEAD/DEAH box helicase CJD48_RS06605 PF17191 RecG wedge domain CJD48_RS06620 PF00005 ABC transporter CJD48_RS06630 PF07730 Histidine kinase CJD48_RS06635 PF00196 Bacterial regulatory proteins, luxR family CJD48_RS06635 PF00072 Response regulator receiver domain CJD48_RS06650 PF09363 XFP C-terminal domain CJD48_RS06650 PF09364 XFP N-terminal domain CJD48_RS06650 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase CJD48_RS06655 PF00117 Glutamine amidotransferase class-I CJD48_RS06655 PF02540 NAD synthase CJD48_RS06655 PF00958 GMP synthase C terminal domain CJD48_RS06690 PF08903 Domain of unknown function (DUF1846) CJD48_RS06695 PF07085 DRTGG domain CJD48_RS06695 PF01515 Phosphate acetyl/butaryl transferase CJD48_RS06700 PF00871 Acetokinase family CJD48_RS06705 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJD48_RS06710 PF03575 Peptidase family S51 CJD48_RS06715 PF02899 Phage integrase, N-terminal SAM-like domain CJD48_RS06715 PF00589 Phage integrase family CJD48_RS06730 PF00128 Alpha amylase, catalytic domain CJD48_RS06730 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CJD48_RS06735 PF00293 NUDIX domain CJD48_RS06740 PF01784 NIF3 (NGG1p interacting factor 3) CJD48_RS06750 PF00072 Response regulator receiver domain CJD48_RS06750 PF03861 ANTAR domain CJD48_RS06760 PF05257 CHAP domain CJD48_RS06850 PF17841 BID domain of Bartonella effector protein (Bep) CJD48_RS06850 PF03389 MobA/MobL family CJD48_RS06850 PF01443 Viral (Superfamily 1) RNA helicase CJD48_RS06870 PF01381 Helix-turn-helix CJD48_RS06875 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB CJD48_RS06945 PF00293 NUDIX domain CJD48_RS06950 PF00224 Pyruvate kinase, barrel domain CJD48_RS06950 PF02887 Pyruvate kinase, alpha/beta domain CJD48_RS06955 PF03741 Integral membrane protein TerC family CJD48_RS06960 PF00271 Helicase conserved C-terminal domain CJD48_RS06960 PF17757 UvrB interaction domain CJD48_RS06960 PF02151 UvrB/uvrC motif CJD48_RS06960 PF12344 Ultra-violet resistance protein B CJD48_RS06960 PF04851 Type III restriction enzyme, res subunit CJD48_RS06965 PF01121 Dephospho-CoA kinase CJD48_RS06970 PF00575 S1 RNA binding domain CJD48_RS06975 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CJD48_RS06975 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CJD48_RS06985 PF00005 ABC transporter CJD48_RS06990 PF00950 ABC 3 transport family CJD48_RS06995 PF02542 YgbB family CJD48_RS07000 PF02559 CarD-like/TRCF domain CJD48_RS07005 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CJD48_RS07005 PF02806 Alpha amylase, C-terminal all-beta domain CJD48_RS07005 PF00128 Alpha amylase, catalytic domain CJD48_RS07010 PF00486 Transcriptional regulatory protein, C terminal CJD48_RS07010 PF00072 Response regulator receiver domain CJD48_RS07015 PF00672 HAMP domain CJD48_RS07015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD48_RS07015 PF00512 His Kinase A (phospho-acceptor) domain CJD48_RS07020 PF00717 Peptidase S24-like CJD48_RS07025 PF00156 Phosphoribosyl transferase domain CJD48_RS07050 PF02467 Transcription factor WhiB CJD48_RS07055 PF03816 Cell envelope-related transcriptional attenuator domain CJD48_RS07060 PF12538 DNA transporter CJD48_RS07060 PF01580 FtsK/SpoIIIE family CJD48_RS07065 PF02467 Transcription factor WhiB CJD48_RS07070 PF12282 Signal transduction histidine kinase CJD48_RS07070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD48_RS07070 PF07568 Histidine kinase CJD48_RS07075 PF03006 Haemolysin-III related CJD48_RS07085 PF01272 Transcription elongation factor, GreA/GreB, C-term CJD48_RS07085 PF03449 Transcription elongation factor, N-terminal CJD48_RS07090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJD48_RS07095 PF03313 Serine dehydratase alpha chain CJD48_RS07095 PF03315 Serine dehydratase beta chain CJD48_RS07110 PF02541 Ppx/GppA phosphatase family CJD48_RS07125 PF00113 Enolase, C-terminal TIM barrel domain CJD48_RS07125 PF03952 Enolase, N-terminal domain CJD48_RS07130 PF01063 Amino-transferase class IV CJD48_RS07135 PF00425 chorismate binding enzyme CJD48_RS07135 PF04715 Anthranilate synthase component I, N terminal region CJD48_RS07140 PF02559 CarD-like/TRCF domain CJD48_RS07140 PF00270 DEAD/DEAH box helicase CJD48_RS07140 PF00271 Helicase conserved C-terminal domain CJD48_RS07140 PF17757 UvrB interaction domain CJD48_RS07140 PF03461 TRCF domain CJD48_RS07145 PF01195 Peptidyl-tRNA hydrolase CJD48_RS07155 PF00005 ABC transporter CJD48_RS07155 PF08239 Bacterial SH3 domain CJD48_RS07160 PF01061 ABC-2 type transporter CJD48_RS07165 PF16363 GDP-mannose 4,6 dehydratase CJD48_RS07170 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJD48_RS07190 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CJD48_RS07195 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CJD48_RS07200 PF03699 Uncharacterised protein family (UPF0182) CJD48_RS07205 PF00933 Glycosyl hydrolase family 3 N terminal domain CJD48_RS07215 PF00005 ABC transporter CJD48_RS07235 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD48_RS07235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJD48_RS07240 PF13829 Domain of unknown function (DUF4191) CJD48_RS07245 PF03951 Glutamine synthetase, beta-Grasp domain CJD48_RS07245 PF00120 Glutamine synthetase, catalytic domain CJD48_RS07280 PF04555 Restriction endonuclease XhoI CJD48_RS07285 PF07669 Eco57I restriction-modification methylase CJD48_RS07285 PF12950 TaqI-like C-terminal specificity domain CJD48_RS07290 PF14659 Phage integrase, N-terminal SAM-like domain CJD48_RS07290 PF00589 Phage integrase family CJD48_RS07300 PF01883 Iron-sulfur cluster assembly protein CJD48_RS07300 PF10609 NUBPL iron-transfer P-loop NTPase CJD48_RS07305 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CJD48_RS07305 PF12826 Helix-hairpin-helix motif CJD48_RS07305 PF01653 NAD-dependent DNA ligase adenylation domain CJD48_RS07305 PF03120 NAD-dependent DNA ligase OB-fold domain CJD48_RS07305 PF00533 BRCA1 C Terminus (BRCT) domain CJD48_RS07325 PF00005 ABC transporter CJD48_RS07330 PF00155 Aminotransferase class I and II CJD48_RS07335 PF00480 ROK family CJD48_RS07345 PF02361 Cobalt transport protein CJD48_RS07345 PF00005 ABC transporter CJD48_RS07350 PF07690 Major Facilitator Superfamily CJD48_RS07355 PF16193 AAA C-terminal domain CJD48_RS07355 PF12002 MgsA AAA+ ATPase C terminal CJD48_RS07355 PF00004 ATPase family associated with various cellular activities (AAA) CJD48_RS07360 PF00271 Helicase conserved C-terminal domain CJD48_RS07360 PF08148 DSHCT (NUC185) domain CJD48_RS07360 PF00270 DEAD/DEAH box helicase CJD48_RS07365 PF03976 Polyphosphate kinase 2 (PPK2) CJD48_RS07370 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS07375 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS07380 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD48_RS07385 PF00005 ABC transporter CJD48_RS07400 PF13333 Integrase core domain CJD48_RS07400 PF13276 HTH-like domain CJD48_RS07400 PF00665 Integrase core domain CJD48_RS07410 PF01336 OB-fold nucleic acid binding domain CJD48_RS07410 PF02938 GAD domain CJD48_RS07410 PF00152 tRNA synthetases class II (D, K and N) CJD48_RS07415 PF13393 Histidyl-tRNA synthetase CJD48_RS07415 PF03129 Anticodon binding domain CJD48_RS07420 PF03993 Domain of Unknown Function (DUF349) CJD48_RS07430 PF02861 Clp amino terminal domain, pathogenicity island component CJD48_RS07430 PF00004 ATPase family associated with various cellular activities (AAA) CJD48_RS07430 PF07724 AAA domain (Cdc48 subfamily) CJD48_RS07430 PF10431 C-terminal, D2-small domain, of ClpB protein CJD48_RS07430 PF17871 AAA lid domain CJD48_RS07435 PF00582 Universal stress protein family CJD48_RS07445 PF00313 'Cold-shock' DNA-binding domain CJD48_RS07450 PF00672 HAMP domain CJD48_RS07450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD48_RS07450 PF00512 His Kinase A (phospho-acceptor) domain CJD48_RS07455 PF00486 Transcriptional regulatory protein, C terminal CJD48_RS07455 PF00072 Response regulator receiver domain CJD48_RS07470 PF00118 TCP-1/cpn60 chaperonin family CJD48_RS07475 PF00313 'Cold-shock' DNA-binding domain CJD48_RS07485 PF03167 Uracil DNA glycosylase superfamily CJD48_RS07490 PF17863 AAA lid domain CJD48_RS07490 PF07726 ATPase family associated with various cellular activities (AAA) CJD48_RS07530 PF00206 Lyase CJD48_RS07530 PF08328 Adenylosuccinate lyase C-terminal CJD48_RS07540 PF00216 Bacterial DNA-binding protein CJD48_RS07545 PF03136 Pup-ligase protein CJD48_RS07555 PF00459 Inositol monophosphatase family CJD48_RS07560 PF03136 Pup-ligase protein CJD48_RS07565 PF16450 Proteasomal ATPase OB C-terminal domain CJD48_RS07565 PF00004 ATPase family associated with various cellular activities (AAA) CJD48_RS07565 PF17758 Proteasomal ATPase OB N-terminal domain CJD48_RS07575 PF02911 Formyl transferase, C-terminal domain CJD48_RS07575 PF00551 Formyl transferase CJD48_RS07580 PF13419 Haloacid dehalogenase-like hydrolase CJD48_RS07585 PF17764 3′ DNA-binding domain (3′BD) CJD48_RS07590 PF02772 S-adenosylmethionine synthetase, central domain CJD48_RS07590 PF00438 S-adenosylmethionine synthetase, N-terminal domain CJD48_RS07590 PF02773 S-adenosylmethionine synthetase, C-terminal domain CJD48_RS07595 PF01192 RNA polymerase Rpb6 CJD48_RS07600 PF00920 Dehydratase family CJD48_RS07610 PF00694 Aconitase C-terminal domain CJD48_RS07610 PF00330 Aconitase family (aconitate hydratase) CJD48_RS07625 PF05958 tRNA (Uracil-5-)-methyltransferase CJD48_RS07640 PF03372 Endonuclease/Exonuclease/phosphatase family CJD48_RS07650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD48_RS07655 PF00005 ABC transporter CJD48_RS07655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD48_RS07660 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS07660 PF12911 N-terminal TM domain of oligopeptide transport permease C CJD48_RS07665 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS07670 PF02899 Phage integrase, N-terminal SAM-like domain CJD48_RS07670 PF00589 Phage integrase family CJD48_RS07680 PF02153 Prephenate dehydrogenase CJD48_RS07695 PF00009 Elongation factor Tu GTP binding domain CJD48_RS07695 PF03144 Elongation factor Tu domain 2 CJD48_RS07695 PF00679 Elongation factor G C-terminus CJD48_RS07695 PF14492 Elongation Factor G, domain II CJD48_RS07700 PF00266 Aminotransferase class-V CJD48_RS07705 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CJD48_RS07705 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CJD48_RS07710 PF00890 FAD binding domain CJD48_RS07710 PF02910 Fumarate reductase flavoprotein C-term CJD48_RS07715 PF02445 Quinolinate synthetase A protein CJD48_RS07725 PF04079 Segregation and condensation complex subunit ScpB CJD48_RS07730 PF02616 Segregation and condensation protein ScpA CJD48_RS07735 PF13614 AAA domain CJD48_RS07740 PF02899 Phage integrase, N-terminal SAM-like domain CJD48_RS07740 PF00589 Phage integrase family CJD48_RS07745 PF00453 Ribosomal protein L20 CJD48_RS07750 PF01632 Ribosomal protein L35 CJD48_RS07755 PF05198 Translation initiation factor IF-3, N-terminal domain CJD48_RS07755 PF00707 Translation initiation factor IF-3, C-terminal domain CJD48_RS07775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJD48_RS07775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJD48_RS07780 PF04073 Aminoacyl-tRNA editing domain CJD48_RS07790 PF02401 LytB protein CJD48_RS07795 PF01263 Aldose 1-epimerase CJD48_RS07805 PF08281 Sigma-70, region 4 CJD48_RS07805 PF04542 Sigma-70 region 2 CJD48_RS07810 PF08245 Mur ligase middle domain CJD48_RS07810 PF02875 Mur ligase family, glutamate ligase domain CJD48_RS07830 PF01177 Asp/Glu/Hydantoin racemase CJD48_RS07835 PF02463 RecF/RecN/SMC N terminal domain CJD48_RS07835 PF06470 SMC proteins Flexible Hinge Domain CJD48_RS07840 PF02875 Mur ligase family, glutamate ligase domain CJD48_RS07840 PF08245 Mur ligase middle domain CJD48_RS07845 PF13344 Haloacid dehalogenase-like hydrolase CJD48_RS07845 PF00293 NUDIX domain CJD48_RS07850 PF00557 Metallopeptidase family M24 CJD48_RS07850 PF05195 Aminopeptidase P, N-terminal domain CJD48_RS07855 PF00005 ABC transporter CJD48_RS07855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD48_RS07860 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS07865 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS07870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD48_RS07875 PF01979 Amidohydrolase family CJD48_RS07880 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CJD48_RS07885 PF00480 ROK family CJD48_RS07890 PF03932 CutC family CJD48_RS07895 PF01047 MarR family CJD48_RS07895 PF00480 ROK family CJD48_RS07910 PF02580 D-Tyr-tRNA(Tyr) deacylase CJD48_RS07930 PF01225 Mur ligase family, catalytic domain CJD48_RS07930 PF02875 Mur ligase family, glutamate ligase domain CJD48_RS07930 PF08245 Mur ligase middle domain CJD48_RS07935 PF04101 Glycosyltransferase family 28 C-terminal domain CJD48_RS07935 PF03033 Glycosyltransferase family 28 N-terminal domain CJD48_RS07940 PF01098 Cell cycle protein CJD48_RS07945 PF08245 Mur ligase middle domain CJD48_RS07945 PF02875 Mur ligase family, glutamate ligase domain CJD48_RS07950 PF00953 Glycosyl transferase family 4 CJD48_RS07955 PF01225 Mur ligase family, catalytic domain CJD48_RS07955 PF08245 Mur ligase middle domain CJD48_RS07955 PF02875 Mur ligase family, glutamate ligase domain CJD48_RS07965 PF03717 Penicillin-binding Protein dimerisation domain CJD48_RS07965 PF00905 Penicillin binding protein transpeptidase domain CJD48_RS07975 PF01795 MraW methylase family CJD48_RS07980 PF02381 MraZ protein, putative antitoxin-like CJD48_RS07990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJD48_RS07990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJD48_RS07995 PF03477 ATP cone domain CJD48_RS08005 PF01726 LexA DNA binding domain CJD48_RS08005 PF00717 Peptidase S24-like CJD48_RS08010 PF01545 Cation efflux family CJD48_RS08015 PF00056 lactate/malate dehydrogenase, NAD binding domain CJD48_RS08015 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJD48_RS08020 PF01926 50S ribosome-binding GTPase CJD48_RS08020 PF13167 GTP-binding GTPase N-terminal CJD48_RS08020 PF16360 GTP-binding GTPase Middle Region CJD48_RS08030 PF05175 Methyltransferase small domain CJD48_RS08030 PF08468 Methyltransferase small domain N-terminal CJD48_RS08035 PF00271 Helicase conserved C-terminal domain CJD48_RS08035 PF11898 Domain of unknown function (DUF3418) CJD48_RS08035 PF04408 Helicase associated domain (HA2) CJD48_RS08035 PF00270 DEAD/DEAH box helicase CJD48_RS08035 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CJD48_RS08055 PF00120 Glutamine synthetase, catalytic domain CJD48_RS08055 PF03951 Glutamine synthetase, beta-Grasp domain CJD48_RS08065 PF00977 Histidine biosynthesis protein CJD48_RS08070 PF00117 Glutamine amidotransferase class-I CJD48_RS08080 PF00475 Imidazoleglycerol-phosphate dehydratase CJD48_RS08085 PF00155 Aminotransferase class I and II CJD48_RS08090 PF00815 Histidinol dehydrogenase CJD48_RS08110 PF13811 Domain of unknown function (DUF4186) CJD48_RS08115 PF00248 Aldo/keto reductase family CJD48_RS08120 PF00248 Aldo/keto reductase family CJD48_RS08130 PF00308 Bacterial dnaA protein CJD48_RS08130 PF08299 Bacterial dnaA protein helix-turn-helix CJD48_RS08130 PF11638 DnaA N-terminal domain CJD48_RS08135 PF06100 MCRA family CJD48_RS08150 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJD48_RS08150 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJD48_RS08150 PF02811 PHP domain CJD48_RS08150 PF14579 Helix-hairpin-helix motif CJD48_RS08155 PF08244 Glycosyl hydrolases family 32 C terminal CJD48_RS08155 PF00251 Glycosyl hydrolases family 32 N-terminal domain CJD48_RS08165 PF09234 Domain of unknown function (DUF1963) CJD48_RS08170 PF01255 Putative undecaprenyl diphosphate synthase CJD48_RS08175 PF02565 Recombination protein O C terminal CJD48_RS08175 PF11967 Recombination protein O N terminal CJD48_RS08185 PF04551 GcpE protein CJD48_RS08190 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJD48_RS08190 PF13288 DXP reductoisomerase C-terminal domain CJD48_RS08190 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CJD48_RS08215 PF01381 Helix-turn-helix CJD48_RS08220 PF00849 RNA pseudouridylate synthase CJD48_RS08225 PF01668 SmpB protein CJD48_RS08230 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJD48_RS08230 PF05257 CHAP domain CJD48_RS08235 PF18075 FtsX extracellular domain CJD48_RS08235 PF02687 FtsX-like permease family CJD48_RS08240 PF00005 ABC transporter CJD48_RS08245 PF03462 PCRF domain CJD48_RS08245 PF00472 RF-1 domain CJD48_RS08250 PF14602 Hexapeptide repeat of succinyl-transferase CJD48_RS08250 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CJD48_RS08265 PF00849 RNA pseudouridylate synthase CJD48_RS08270 PF01252 Signal peptidase (SPase) II CJD48_RS08285 PF04472 Cell division protein SepF CJD48_RS08290 PF00091 Tubulin/FtsZ family, GTPase domain CJD48_RS08290 PF12327 FtsZ family, C-terminal domain CJD48_RS08295 PF01207 Dihydrouridine synthase (Dus) CJD48_RS08300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJD48_RS08300 PF03129 Anticodon binding domain CJD48_RS08305 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CJD48_RS08305 PF00703 Glycosyl hydrolases family 2 CJD48_RS08305 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CJD48_RS08305 PF16355 Domain of unknown function (DUF4982) CJD48_RS08305 PF02837 Glycosyl hydrolases family 2, sugar binding domain CJD48_RS08310 PF02110 Hydroxyethylthiazole kinase family CJD48_RS08315 PF13667 ThiC-associated domain CJD48_RS08315 PF01964 Radical SAM ThiC family CJD48_RS08315 PF02581 Thiamine monophosphate synthase CJD48_RS08325 PF01434 Peptidase family M41 CJD48_RS08325 PF17862 AAA+ lid domain CJD48_RS08325 PF00004 ATPase family associated with various cellular activities (AAA) CJD48_RS08330 PF08543 Phosphomethylpyrimidine kinase CJD48_RS08335 PF01910 Thiamine-binding protein CJD48_RS08340 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS08345 PF11253 Protein of unknown function (DUF3052) CJD48_RS08350 PF13180 PDZ domain CJD48_RS08350 PF05362 Lon protease (S16) C-terminal proteolytic domain CJD48_RS08360 PF13361 UvrD-like helicase C-terminal domain CJD48_RS08360 PF00580 UvrD/REP helicase N-terminal domain CJD48_RS08360 PF00570 HRDC domain CJD48_RS08375 PF02811 PHP domain CJD48_RS08385 PF01678 Diaminopimelate epimerase CJD48_RS08390 PF01177 Asp/Glu/Hydantoin racemase CJD48_RS08400 PF00005 ABC transporter CJD48_RS08400 PF00664 ABC transporter transmembrane region CJD48_RS08405 PF00664 ABC transporter transmembrane region CJD48_RS08405 PF00005 ABC transporter CJD48_RS08410 PF01047 MarR family CJD48_RS08445 PF03477 ATP cone domain CJD48_RS08445 PF13597 Anaerobic ribonucleoside-triphosphate reductase CJD48_RS08450 PF13742 OB-fold nucleic acid binding domain CJD48_RS08450 PF02601 Exonuclease VII, large subunit CJD48_RS08455 PF02609 Exonuclease VII small subunit CJD48_RS08470 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS08475 PF01156 Inosine-uridine preferring nucleoside hydrolase CJD48_RS08480 PF13686 DsrE/DsrF/DrsH-like family CJD48_RS08485 PF00581 Rhodanese-like domain CJD48_RS08485 PF00899 ThiF family CJD48_RS08495 PF02541 Ppx/GppA phosphatase family CJD48_RS08500 PF02541 Ppx/GppA phosphatase family CJD48_RS08510 PF03852 DNA mismatch endonuclease Vsr CJD48_RS08520 PF01327 Polypeptide deformylase CJD48_RS08525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJD48_RS08525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJD48_RS08525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJD48_RS08525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJD48_RS08530 PF00082 Subtilase family CJD48_RS08535 PF11838 ERAP1-like C-terminal domain CJD48_RS08535 PF01433 Peptidase family M1 domain CJD48_RS08540 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJD48_RS08540 PF12706 Beta-lactamase superfamily domain CJD48_RS08540 PF17770 Ribonuclease J C-terminal domain CJD48_RS08545 PF00701 Dihydrodipicolinate synthetase family CJD48_RS08550 PF05173 Dihydrodipicolinate reductase, C-terminus CJD48_RS08550 PF01113 Dihydrodipicolinate reductase, N-terminus CJD48_RS08585 PF00580 UvrD/REP helicase N-terminal domain CJD48_RS08585 PF13361 UvrD-like helicase C-terminal domain CJD48_RS08595 PF03793 PASTA domain CJD48_RS08595 PF00069 Protein kinase domain CJD48_RS08605 PF07726 ATPase family associated with various cellular activities (AAA) CJD48_RS08605 PF17863 AAA lid domain CJD48_RS08635 PF05000 RNA polymerase Rpb1, domain 4 CJD48_RS08635 PF04998 RNA polymerase Rpb1, domain 5 CJD48_RS08635 PF04983 RNA polymerase Rpb1, domain 3 CJD48_RS08635 PF00623 RNA polymerase Rpb1, domain 2 CJD48_RS08635 PF04997 RNA polymerase Rpb1, domain 1 CJD48_RS08640 PF04563 RNA polymerase beta subunit CJD48_RS08640 PF04561 RNA polymerase Rpb2, domain 2 CJD48_RS08640 PF04565 RNA polymerase Rpb2, domain 3 CJD48_RS08640 PF04560 RNA polymerase Rpb2, domain 7 CJD48_RS08640 PF00562 RNA polymerase Rpb2, domain 6 CJD48_RS08640 PF10385 RNA polymerase beta subunit external 1 domain CJD48_RS08650 PF00730 HhH-GPD superfamily base excision DNA repair protein CJD48_RS08650 PF00633 Helix-hairpin-helix motif CJD48_RS08665 PF00588 SpoU rRNA Methylase family CJD48_RS08685 PF05167 Uncharacterised ACR (DUF711) CJD48_RS08695 PF07690 Major Facilitator Superfamily CJD48_RS08695 PF00083 Sugar (and other) transporter CJD48_RS08700 PF00288 GHMP kinases N terminal domain CJD48_RS08700 PF10509 Galactokinase galactose-binding signature CJD48_RS08700 PF08544 GHMP kinases C terminal CJD48_RS08705 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CJD48_RS08705 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CJD48_RS08710 PF08220 DeoR-like helix-turn-helix domain CJD48_RS08710 PF00455 DeoR C terminal sensor domain CJD48_RS08715 PF01180 Dihydroorotate dehydrogenase CJD48_RS08720 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJD48_RS08730 PF13276 HTH-like domain CJD48_RS08730 PF00665 Integrase core domain CJD48_RS08730 PF13333 Integrase core domain CJD48_RS08735 PF00905 Penicillin binding protein transpeptidase domain CJD48_RS08735 PF00912 Transglycosylase CJD48_RS08740 PF00027 Cyclic nucleotide-binding domain CJD48_RS08740 PF13545 Crp-like helix-turn-helix domain CJD48_RS08745 PF03099 Biotin/lipoate A/B protein ligase family CJD48_RS08745 PF10437 Bacterial lipoate protein ligase C-terminus CJD48_RS08750 PF00180 Isocitrate/isopropylmalate dehydrogenase CJD48_RS08755 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CJD48_RS08755 PF00326 Prolyl oligopeptidase family CJD48_RS08765 PF01597 Glycine cleavage H-protein CJD48_RS08775 PF00293 NUDIX domain CJD48_RS08775 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CJD48_RS08775 PF09297 NADH pyrophosphatase zinc ribbon domain CJD48_RS08790 PF00085 Thioredoxin CJD48_RS08805 PF07690 Major Facilitator Superfamily CJD48_RS08810 PF01566 Natural resistance-associated macrophage protein CJD48_RS08810 PF03358 NADPH-dependent FMN reductase CJD48_RS08820 PF00248 Aldo/keto reductase family CJD48_RS08825 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS08840 PF01174 SNO glutamine amidotransferase family CJD48_RS08845 PF01680 SOR/SNZ family CJD48_RS08850 PF00501 AMP-binding enzyme CJD48_RS08860 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS08865 PF01351 Ribonuclease HII CJD48_RS08870 PF10502 Signal peptidase, peptidase S26 CJD48_RS08875 PF01245 Ribosomal protein L19 CJD48_RS08880 PF00596 Class II Aldolase and Adducin N-terminal domain CJD48_RS08885 PF01261 Xylose isomerase-like TIM barrel CJD48_RS08890 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJD48_RS08890 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJD48_RS08895 PF03611 PTS system sugar-specific permease component CJD48_RS08900 PF04198 Putative sugar-binding domain CJD48_RS08900 PF13936 Helix-turn-helix domain CJD48_RS08910 PF00005 ABC transporter CJD48_RS08920 PF00342 Phosphoglucose isomerase CJD48_RS08940 PF01725 Ham1 family CJD48_RS08945 PF01138 3' exoribonuclease family, domain 1 CJD48_RS08945 PF03725 3' exoribonuclease family, domain 2 CJD48_RS08950 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CJD48_RS08950 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CJD48_RS08965 PF10369 Small subunit of acetolactate synthase CJD48_RS08970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJD48_RS08970 PF00205 Thiamine pyrophosphate enzyme, central domain CJD48_RS08970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJD48_RS08975 PF14622 Ribonuclease-III-like CJD48_RS08975 PF00035 Double-stranded RNA binding motif CJD48_RS08980 PF01783 Ribosomal L32p protein family CJD48_RS08995 PF01467 Cytidylyltransferase-like CJD48_RS09005 PF16326 ABC transporter C-terminal domain CJD48_RS09005 PF12848 ABC transporter CJD48_RS09005 PF00005 ABC transporter CJD48_RS09010 PF00117 Glutamine amidotransferase class-I CJD48_RS09010 PF00958 GMP synthase C terminal domain CJD48_RS09015 PF01406 tRNA synthetases class I (C) catalytic domain CJD48_RS09015 PF09190 DALR domain CJD48_RS09025 PF02881 SRP54-type protein, helical bundle domain CJD48_RS09025 PF02978 Signal peptide binding domain CJD48_RS09025 PF00448 SRP54-type protein, GTPase domain CJD48_RS09040 PF00392 Bacterial regulatory proteins, gntR family CJD48_RS09040 PF00155 Aminotransferase class I and II CJD48_RS09050 PF00886 Ribosomal protein S16 CJD48_RS09060 PF01782 RimM N-terminal domain CJD48_RS09065 PF01746 tRNA (Guanine-1)-methyltransferase CJD48_RS09070 PF00011 Hsp20/alpha crystallin family CJD48_RS09085 PF00375 Sodium:dicarboxylate symporter family CJD48_RS09105 PF00270 DEAD/DEAH box helicase CJD48_RS09105 PF17191 RecG wedge domain CJD48_RS09105 PF00271 Helicase conserved C-terminal domain CJD48_RS09110 PF00830 Ribosomal L28 family CJD48_RS09125 PF11700 Vacuole effluxer Atg22 like CJD48_RS09130 PF13411 MerR HTH family regulatory protein CJD48_RS09205 PF00501 AMP-binding enzyme CJD48_RS09230 PF00155 Aminotransferase class I and II CJD48_RS09250 PF10431 C-terminal, D2-small domain, of ClpB protein CJD48_RS09250 PF02861 Clp amino terminal domain, pathogenicity island component CJD48_RS09250 PF17871 AAA lid domain CJD48_RS09250 PF07724 AAA domain (Cdc48 subfamily) CJD48_RS09250 PF00004 ATPase family associated with various cellular activities (AAA) CJD48_RS09260 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJD48_RS09285 PF00708 Acylphosphatase CJD48_RS09290 PF01168 Alanine racemase, N-terminal domain CJD48_RS09295 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJD48_RS09310 PF00230 Major intrinsic protein CJD48_RS09335 PF01281 Ribosomal protein L9, N-terminal domain CJD48_RS09335 PF03948 Ribosomal protein L9, C-terminal domain CJD48_RS09340 PF01084 Ribosomal protein S18 CJD48_RS09345 PF00436 Single-strand binding protein family CJD48_RS09350 PF01250 Ribosomal protein S6 CJD48_RS09370 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJD48_RS09370 PF14572 Phosphoribosyl synthetase-associated domain CJD48_RS09375 PF04650 YSIRK type signal peptide CJD48_RS09375 PF12905 Endo-alpha-N-acetylgalactosaminidase CJD48_RS09375 PF17451 Glycosyl hydrolase 101 beta sandwich domain CJD48_RS09375 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal CJD48_RS09375 PF17974 Galactose-binding domain-like CJD48_RS09375 PF18080 Galactose mutarotase-like fold domain CJD48_RS09375 PF00754 F5/8 type C domain CJD48_RS09380 PF03009 Glycerophosphoryl diester phosphodiesterase family CJD48_RS09385 PF07478 D-ala D-ala ligase C-terminus CJD48_RS09385 PF01820 D-ala D-ala ligase N-terminus CJD48_RS09395 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CJD48_RS09395 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CJD48_RS09405 PF02357 Transcription termination factor nusG CJD48_RS09410 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CJD48_RS09420 PF00155 Aminotransferase class I and II CJD48_RS09425 PF01472 PUA domain CJD48_RS09425 PF00696 Amino acid kinase family CJD48_RS09430 PF09269 Domain of unknown function (DUF1967) CJD48_RS09430 PF01926 50S ribosome-binding GTPase CJD48_RS09430 PF01018 GTP1/OBG CJD48_RS09440 PF01016 Ribosomal L27 protein CJD48_RS09445 PF00829 Ribosomal prokaryotic L21 protein CJD48_RS09450 PF10150 Ribonuclease E/G family CJD48_RS09455 PF01546 Peptidase family M20/M25/M40 CJD48_RS09455 PF07687 Peptidase dimerisation domain CJD48_RS09470 PF00005 ABC transporter CJD48_RS09485 PF00293 NUDIX domain CJD48_RS09485 PF02545 Maf-like protein CJD48_RS09490 PF00288 GHMP kinases N terminal domain CJD48_RS09495 PF01842 ACT domain CJD48_RS09495 PF03447 Homoserine dehydrogenase, NAD binding domain CJD48_RS09495 PF00742 Homoserine dehydrogenase CJD48_RS09500 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJD48_RS09500 PF00367 phosphotransferase system, EIIB CJD48_RS09500 PF02378 Phosphotransferase system, EIIC CJD48_RS09505 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJD48_RS09505 PF00367 phosphotransferase system, EIIB CJD48_RS09505 PF02378 Phosphotransferase system, EIIC CJD48_RS09510 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJD48_RS09510 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJD48_RS09515 PF03485 Arginyl tRNA synthetase N terminal domain CJD48_RS09515 PF00750 tRNA synthetases class I (R) CJD48_RS09515 PF05746 DALR anticodon binding domain CJD48_RS09520 PF03009 Glycerophosphoryl diester phosphodiesterase family CJD48_RS09530 PF01042 Endoribonuclease L-PSP CJD48_RS09535 PF17385 Lacto-N-biose phosphorylase central domain CJD48_RS09535 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain CJD48_RS09535 PF17386 Lacto-N-biose phosphorylase C-terminal domain CJD48_RS09555 PF00356 Bacterial regulatory proteins, lacI family CJD48_RS09585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJD48_RS09590 PF00687 Ribosomal protein L1p/L10e family CJD48_RS09595 PF03946 Ribosomal protein L11, N-terminal domain CJD48_RS09595 PF00298 Ribosomal protein L11, RNA binding domain CJD48_RS09605 PF17932 Tetracyclin repressor-like, C-terminal domain CJD48_RS09605 PF00440 Bacterial regulatory proteins, tetR family CJD48_RS09615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJD48_RS09620 PF01180 Dihydroorotate dehydrogenase CJD48_RS09640 PF00271 Helicase conserved C-terminal domain CJD48_RS09640 PF00176 SNF2 family N-terminal domain CJD48_RS09640 PF04434 SWIM zinc finger CJD48_RS09645 PF00694 Aconitase C-terminal domain CJD48_RS09650 PF00330 Aconitase family (aconitate hydratase) CJD48_RS09685 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJD48_RS09695 PF13419 Haloacid dehalogenase-like hydrolase CJD48_RS09705 PF00528 Binding-protein-dependent transport system inner membrane component CJD48_RS09715 PF00665 Integrase core domain CJD48_RS09715 PF13333 Integrase core domain CJD48_RS09715 PF13276 HTH-like domain CJD48_RS09730 PF00145 C-5 cytosine-specific DNA methylase CJD48_RS09735 PF00176 SNF2 family N-terminal domain CJD48_RS09735 PF00271 Helicase conserved C-terminal domain CJD48_RS09740 PF01555 DNA methylase CJD48_RS09765 PF03852 DNA mismatch endonuclease Vsr CJD48_RS09805 PF01268 Formate--tetrahydrofolate ligase CJD48_RS09810 PF03577 Peptidase family C69 CJD48_RS09820 PF02368 Bacterial Ig-like domain (group 2) CJD48_RS09825 PF00005 ABC transporter CJD48_RS09825 PF00664 ABC transporter transmembrane region CJD48_RS09830 PF00664 ABC transporter transmembrane region CJD48_RS09830 PF00005 ABC transporter CJD48_RS09835 PF01047 MarR family CJD48_RS09850 PF00248 Aldo/keto reductase family CJD48_RS09870 PF13395 HNH endonuclease CJD48_RS09870 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 CJD48_RS09870 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 CJD48_RS09870 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 CJD48_RS09875 PF01867 CRISPR associated protein Cas1 CJD48_RS09880 PF09827 CRISPR associated protein Cas2 CJD48_RS09890 PF01695 IstB-like ATP binding protein