MADAR_RS00040	PWY-6938	NADH repair
MADAR_RS00075	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MADAR_RS00075	PWY-6148	tetrahydromethanopterin biosynthesis
MADAR_RS00075	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
MADAR_RS00075	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
MADAR_RS00110	PWY-6898	thiamin salvage III
MADAR_RS00110	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
MADAR_RS00110	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
MADAR_RS00110	PWY-7356	thiamin salvage IV (yeast)
MADAR_RS00120	PWY-1622	formaldehyde assimilation I (serine pathway)
MADAR_RS00120	PWY-5392	reductive TCA cycle II
MADAR_RS00120	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MADAR_RS00120	PWY-5690	TCA cycle II (plants and fungi)
MADAR_RS00120	PWY-5913	TCA cycle VI (obligate autotrophs)
MADAR_RS00120	PWY-6728	methylaspartate cycle
MADAR_RS00120	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MADAR_RS00120	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
MADAR_RS00120	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MADAR_RS00130	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
MADAR_RS00130	PWY-5368	dimorphecolate biosynthesis
MADAR_RS00130	PWY-5995	linoleate biosynthesis I (plants)
MADAR_RS00130	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
MADAR_RS00130	PWY-6803	phosphatidylcholine acyl editing
MADAR_RS00130	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
MADAR_RS00130	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
MADAR_RS00130	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
MADAR_RS00130	PWY-7470	phosphatidylcholine biosynthesis VII
MADAR_RS00130	PWY-7618	ricinoleate biosynthesis
MADAR_RS00210	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
MADAR_RS00215	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
MADAR_RS00230	PWY-5392	reductive TCA cycle II
MADAR_RS00230	PWY-5537	pyruvate fermentation to acetate V
MADAR_RS00230	PWY-5538	pyruvate fermentation to acetate VI
MADAR_RS00230	PWY-5690	TCA cycle II (plants and fungi)
MADAR_RS00230	PWY-5913	TCA cycle VI (obligate autotrophs)
MADAR_RS00230	PWY-6728	methylaspartate cycle
MADAR_RS00230	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MADAR_RS00230	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MADAR_RS00270	PWY-5686	UMP biosynthesis
MADAR_RS00275	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MADAR_RS00275	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MADAR_RS00295	PWY-6167	flavin biosynthesis II (archaea)
MADAR_RS00295	PWY-6168	flavin biosynthesis III (fungi)
MADAR_RS00350	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MADAR_RS00375	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
MADAR_RS00385	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
MADAR_RS00390	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
MADAR_RS00390	PWY-3461	L-tyrosine biosynthesis II
MADAR_RS00390	PWY-3462	L-phenylalanine biosynthesis II
MADAR_RS00390	PWY-6120	L-tyrosine biosynthesis III
MADAR_RS00390	PWY-6627	salinosporamide A biosynthesis
MADAR_RS00390	PWY-7626	bacilysin biosynthesis
MADAR_RS00390	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
MADAR_RS00395	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
MADAR_RS00395	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
MADAR_RS00405	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MADAR_RS00405	PWY-5723	Rubisco shunt
MADAR_RS00425	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
MADAR_RS00425	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
MADAR_RS00475	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
MADAR_RS00485	PWY-6829	tRNA methylation (yeast)
MADAR_RS00485	PWY-7285	methylwyosine biosynthesis
MADAR_RS00485	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
MADAR_RS00505	PWY-7723	MADAR_RS00505
MADAR_RS00540	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MADAR_RS00540	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MADAR_RS00545	PWY-4202	arsenate detoxification I (glutaredoxin)
MADAR_RS00545	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
MADAR_RS00545	PWY-6608	guanosine nucleotides degradation III
MADAR_RS00545	PWY-6609	adenine and adenosine salvage III
MADAR_RS00545	PWY-6611	adenine and adenosine salvage V
MADAR_RS00545	PWY-6620	guanine and guanosine salvage
MADAR_RS00545	PWY-6627	salinosporamide A biosynthesis
MADAR_RS00545	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
MADAR_RS00545	PWY-7179	purine deoxyribonucleosides degradation I
MADAR_RS00545	PWY-7179-1	purine deoxyribonucleosides degradation
MADAR_RS00555	PWY-6012	acyl carrier protein metabolism I
MADAR_RS00555	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
MADAR_RS00585	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MADAR_RS00585	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MADAR_RS00590	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MADAR_RS00590	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
MADAR_RS00590	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
MADAR_RS00590	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MADAR_RS00600	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MADAR_RS00600	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MADAR_RS00605	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MADAR_RS00605	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
MADAR_RS00605	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MADAR_RS00625	PWY-2201	folate transformations I
MADAR_RS00630	PWY-6700	queuosine biosynthesis
MADAR_RS00645	PWY-2941	L-lysine biosynthesis II
MADAR_RS00645	PWY-5097	L-lysine biosynthesis VI
MADAR_RS00675	PWY-6891	thiazole biosynthesis II (Bacillus)
MADAR_RS00675	PWY-6892	thiazole biosynthesis I (E. coli)
MADAR_RS00675	PWY-7560	methylerythritol phosphate pathway II
MADAR_RS00690	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MADAR_RS00710	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MADAR_RS00710	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MADAR_RS00735	PWY-3781	aerobic respiration I (cytochrome c)
MADAR_RS00735	PWY-4521	arsenite oxidation I (respiratory)
MADAR_RS00735	PWY-6692	Fe(II) oxidation
MADAR_RS00735	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
MADAR_RS00760	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MADAR_RS00775	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MADAR_RS00830	PWY-6703	preQ<sub>0</sub> biosynthesis
MADAR_RS00835	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
MADAR_RS00835	PWY-2201	folate transformations I
MADAR_RS00835	PWY-3841	folate transformations II
MADAR_RS00835	PWY-5030	L-histidine degradation III
MADAR_RS00835	PWY-5497	purine nucleobases degradation II (anaerobic)
MADAR_RS00835	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
MADAR_RS00845	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
MADAR_RS00850	PWY-2201	folate transformations I
MADAR_RS00850	PWY-3841	folate transformations II
MADAR_RS00870	PWY-3841	folate transformations II
MADAR_RS00870	PWY-6614	tetrahydrofolate biosynthesis
MADAR_RS00890	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MADAR_RS00890	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
MADAR_RS00890	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MADAR_RS00890	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MADAR_RS00890	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
MADAR_RS00890	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MADAR_RS00890	PWY-7205	CMP phosphorylation
MADAR_RS00890	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MADAR_RS00890	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MADAR_RS00890	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
MADAR_RS00890	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MADAR_RS00890	PWY-7224	purine deoxyribonucleosides salvage
MADAR_RS00890	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
MADAR_RS00890	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
MADAR_RS00900	PWY-5057	L-valine degradation II
MADAR_RS00900	PWY-5076	L-leucine degradation III
MADAR_RS00900	PWY-5078	L-isoleucine degradation II
MADAR_RS00900	PWY-5101	L-isoleucine biosynthesis II
MADAR_RS00900	PWY-5103	L-isoleucine biosynthesis III
MADAR_RS00900	PWY-5104	L-isoleucine biosynthesis IV
MADAR_RS00900	PWY-5108	L-isoleucine biosynthesis V
MADAR_RS00915	PWY-4261	glycerol degradation I
MADAR_RS00915	PWY-6118	glycerol-3-phosphate shuttle
MADAR_RS00915	PWY-6952	glycerophosphodiester degradation
MADAR_RS00920	PWY-4261	glycerol degradation I
MADAR_RS00995	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
MADAR_RS00995	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
MADAR_RS01005	PWY-1042	glycolysis IV (plant cytosol)
MADAR_RS01005	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MADAR_RS01005	PWY-5484	glycolysis II (from fructose 6-phosphate)
MADAR_RS01005	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MADAR_RS01005	PWY-7385	1,3-propanediol biosynthesis (engineered)
MADAR_RS01010	PWY-4381	fatty acid biosynthesis initiation I
MADAR_RS01010	PWY-5743	3-hydroxypropanoate cycle
MADAR_RS01010	PWY-5744	glyoxylate assimilation
MADAR_RS01010	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
MADAR_RS01010	PWY-6679	jadomycin biosynthesis
MADAR_RS01010	PWY-6722	candicidin biosynthesis
MADAR_RS01010	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MADAR_RS01015	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
MADAR_RS01020	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MADAR_RS01020	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MADAR_RS01020	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MADAR_RS01025	PWY-6123	inosine-5'-phosphate biosynthesis I
MADAR_RS01025	PWY-6124	inosine-5'-phosphate biosynthesis II
MADAR_RS01025	PWY-7234	inosine-5'-phosphate biosynthesis III
MADAR_RS01035	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MADAR_RS01035	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MADAR_RS01035	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MADAR_RS01045	PWY-6123	inosine-5'-phosphate biosynthesis I
MADAR_RS01045	PWY-6124	inosine-5'-phosphate biosynthesis II
MADAR_RS01045	PWY-7234	inosine-5'-phosphate biosynthesis III
MADAR_RS01050	PWY-6123	inosine-5'-phosphate biosynthesis I
MADAR_RS01050	PWY-7234	inosine-5'-phosphate biosynthesis III
MADAR_RS01060	PWY-6123	inosine-5'-phosphate biosynthesis I
MADAR_RS01060	PWY-6124	inosine-5'-phosphate biosynthesis II
MADAR_RS01060	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MADAR_RS01060	PWY-7234	inosine-5'-phosphate biosynthesis III
MADAR_RS01065	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MADAR_RS01075	PWY-5381	pyridine nucleotide cycling (plants)
MADAR_RS01075	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
MADAR_RS01075	PWY-6596	adenosine nucleotides degradation I
MADAR_RS01075	PWY-6606	guanosine nucleotides degradation II
MADAR_RS01075	PWY-6607	guanosine nucleotides degradation I
MADAR_RS01075	PWY-6608	guanosine nucleotides degradation III
MADAR_RS01075	PWY-7185	UTP and CTP dephosphorylation I
MADAR_RS01090	PWY-6164	3-dehydroquinate biosynthesis I
MADAR_RS01115	PWY-3841	folate transformations II
MADAR_RS01115	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MADAR_RS01115	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MADAR_RS01115	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MADAR_RS01115	PWY-7199	pyrimidine deoxyribonucleosides salvage
MADAR_RS01115	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MADAR_RS01120	PWY-2941	L-lysine biosynthesis II
MADAR_RS01120	PWY-2942	L-lysine biosynthesis III
MADAR_RS01120	PWY-5097	L-lysine biosynthesis VI
MADAR_RS01120	PWY-6559	spermidine biosynthesis II
MADAR_RS01120	PWY-6562	norspermidine biosynthesis
MADAR_RS01120	PWY-7153	grixazone biosynthesis
MADAR_RS01125	PWY-5704	urea degradation II
MADAR_RS01130	PWY-5704	urea degradation II
MADAR_RS01155	PWY-5484	glycolysis II (from fructose 6-phosphate)
MADAR_RS01165	PWY-5686	UMP biosynthesis
MADAR_RS01205	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MADAR_RS01275	PWY-5392	reductive TCA cycle II
MADAR_RS01275	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MADAR_RS01275	PWY-5690	TCA cycle II (plants and fungi)
MADAR_RS01275	PWY-5913	TCA cycle VI (obligate autotrophs)
MADAR_RS01275	PWY-6728	methylaspartate cycle
MADAR_RS01275	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MADAR_RS01275	PWY-7254	TCA cycle VII (acetate-producers)
MADAR_RS01275	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MADAR_RS01285	PWY-4381	fatty acid biosynthesis initiation I
MADAR_RS01285	PWY-6799	fatty acid biosynthesis (plant mitochondria)
MADAR_RS01285	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MADAR_RS01330	PWY-6167	flavin biosynthesis II (archaea)
MADAR_RS01330	PWY-6168	flavin biosynthesis III (fungi)
MADAR_RS01350	PWY-2941	L-lysine biosynthesis II
MADAR_RS01350	PWY-2942	L-lysine biosynthesis III
MADAR_RS01350	PWY-5097	L-lysine biosynthesis VI
MADAR_RS01385	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MADAR_RS01415	PWY-5663	tetrahydrobiopterin biosynthesis I
MADAR_RS01415	PWY-5664	tetrahydrobiopterin biosynthesis II
MADAR_RS01415	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MADAR_RS01415	PWY-6703	preQ<sub>0</sub> biosynthesis
MADAR_RS01415	PWY-6983	tetrahydrobiopterin biosynthesis III
MADAR_RS01415	PWY-7442	drosopterin and aurodrosopterin biosynthesis
MADAR_RS01425	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
MADAR_RS01425	PWY-5368	dimorphecolate biosynthesis
MADAR_RS01425	PWY-5995	linoleate biosynthesis I (plants)
MADAR_RS01425	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
MADAR_RS01425	PWY-6803	phosphatidylcholine acyl editing
MADAR_RS01425	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
MADAR_RS01425	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
MADAR_RS01425	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
MADAR_RS01425	PWY-7470	phosphatidylcholine biosynthesis VII
MADAR_RS01425	PWY-7618	ricinoleate biosynthesis
MADAR_RS01430	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MADAR_RS01430	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
MADAR_RS01445	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MADAR_RS01445	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
MADAR_RS01480	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MADAR_RS01480	PWY-5686	UMP biosynthesis
MADAR_RS01480	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MADAR_RS01485	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MADAR_RS01485	PWY-5686	UMP biosynthesis
MADAR_RS01485	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MADAR_RS01495	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MADAR_RS01495	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MADAR_RS01500	PWY-4983	L-citrulline-nitric oxide cycle
MADAR_RS01500	PWY-4984	urea cycle
MADAR_RS01500	PWY-5	canavanine biosynthesis
MADAR_RS01500	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MADAR_RS01500	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MADAR_RS01515	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MADAR_RS01515	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MADAR_RS01515	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MADAR_RS01515	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MADAR_RS01515	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MADAR_RS01515	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MADAR_RS01515	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
MADAR_RS01515	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
MADAR_RS01545	PWY-6700	queuosine biosynthesis
MADAR_RS01565	PWY-2201	folate transformations I
MADAR_RS01570	PWY-2941	L-lysine biosynthesis II
MADAR_RS01570	PWY-2942	L-lysine biosynthesis III
MADAR_RS01570	PWY-5097	L-lysine biosynthesis VI
MADAR_RS01570	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MADAR_RS01570	PWY-6559	spermidine biosynthesis II
MADAR_RS01570	PWY-6562	norspermidine biosynthesis
MADAR_RS01570	PWY-7153	grixazone biosynthesis
MADAR_RS01570	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MADAR_RS01595	PWY-1042	glycolysis IV (plant cytosol)
MADAR_RS01595	PWY-5484	glycolysis II (from fructose 6-phosphate)
MADAR_RS01595	PWY-6886	1-butanol autotrophic biosynthesis
MADAR_RS01595	PWY-6901	superpathway of glucose and xylose degradation
MADAR_RS01595	PWY-7003	glycerol degradation to butanol
MADAR_RS01600	PWY-6854	ethylene biosynthesis III (microbes)
MADAR_RS01605	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MADAR_RS01605	PWY-6148	tetrahydromethanopterin biosynthesis
MADAR_RS01605	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
MADAR_RS01605	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
MADAR_RS01615	PWY-6749	CMP-legionaminate biosynthesis I
MADAR_RS01620	PWY-622	starch biosynthesis
MADAR_RS01655	PWY-6683	sulfate reduction III (assimilatory)
MADAR_RS01665	PWY-5194	siroheme biosynthesis
MADAR_RS01665	PWY-5441	S-methyl-L-methionine cycle
MADAR_RS01665	PWY-702	L-methionine biosynthesis II
MADAR_RS01665	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MADAR_RS01670	PWY-6936	seleno-amino acid biosynthesis
MADAR_RS01675	PWY-6936	seleno-amino acid biosynthesis
MADAR_RS01675	PWY-7274	D-cycloserine biosynthesis
MADAR_RS01680	PWY-5278	sulfite oxidation III
MADAR_RS01680	PWY-5340	sulfate activation for sulfonation
MADAR_RS01680	PWY-6683	sulfate reduction III (assimilatory)
MADAR_RS01680	PWY-6932	selenate reduction
MADAR_RS01685	PWY-5278	sulfite oxidation III
MADAR_RS01685	PWY-5340	sulfate activation for sulfonation
MADAR_RS01685	PWY-6683	sulfate reduction III (assimilatory)
MADAR_RS01685	PWY-6932	selenate reduction
MADAR_RS01695	PWY-5913	TCA cycle VI (obligate autotrophs)
MADAR_RS01695	PWY-6549	L-glutamine biosynthesis III
MADAR_RS01695	PWY-6728	methylaspartate cycle
MADAR_RS01695	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MADAR_RS01695	PWY-7124	ethylene biosynthesis V (engineered)
MADAR_RS01695	PWY-7254	TCA cycle VII (acetate-producers)
MADAR_RS01695	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
MADAR_RS01705	PWY-1042	glycolysis IV (plant cytosol)
MADAR_RS01705	PWY-1622	formaldehyde assimilation I (serine pathway)
MADAR_RS01705	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MADAR_RS01705	PWY-5484	glycolysis II (from fructose 6-phosphate)
MADAR_RS01705	PWY-5723	Rubisco shunt
MADAR_RS01705	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
MADAR_RS01705	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MADAR_RS01705	PWY-6886	1-butanol autotrophic biosynthesis
MADAR_RS01705	PWY-6901	superpathway of glucose and xylose degradation
MADAR_RS01705	PWY-7003	glycerol degradation to butanol
MADAR_RS01705	PWY-7124	ethylene biosynthesis V (engineered)
MADAR_RS01705	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MADAR_RS01715	PWY-5839	menaquinol-7 biosynthesis
MADAR_RS01715	PWY-5851	demethylmenaquinol-9 biosynthesis
MADAR_RS01715	PWY-5852	demethylmenaquinol-8 biosynthesis I
MADAR_RS01715	PWY-5853	demethylmenaquinol-6 biosynthesis I
MADAR_RS01715	PWY-5890	menaquinol-10 biosynthesis
MADAR_RS01715	PWY-5891	menaquinol-11 biosynthesis
MADAR_RS01715	PWY-5892	menaquinol-12 biosynthesis
MADAR_RS01715	PWY-5895	menaquinol-13 biosynthesis
MADAR_RS01720	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
MADAR_RS01735	PWY-1042	glycolysis IV (plant cytosol)
MADAR_RS01735	PWY-1622	formaldehyde assimilation I (serine pathway)
MADAR_RS01735	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MADAR_RS01735	PWY-5484	glycolysis II (from fructose 6-phosphate)
MADAR_RS01735	PWY-5723	Rubisco shunt
MADAR_RS01735	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MADAR_RS01735	PWY-6886	1-butanol autotrophic biosynthesis
MADAR_RS01735	PWY-6901	superpathway of glucose and xylose degradation
MADAR_RS01735	PWY-7003	glycerol degradation to butanol
MADAR_RS01735	PWY-7124	ethylene biosynthesis V (engineered)
MADAR_RS01735	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MADAR_RS01900	PWY-1042	glycolysis IV (plant cytosol)
MADAR_RS01900	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MADAR_RS01900	PWY-5484	glycolysis II (from fructose 6-phosphate)
MADAR_RS01900	PWY-5723	Rubisco shunt
MADAR_RS01900	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MADAR_RS01900	PWY-6886	1-butanol autotrophic biosynthesis
MADAR_RS01900	PWY-6901	superpathway of glucose and xylose degradation
MADAR_RS01900	PWY-7003	glycerol degradation to butanol
MADAR_RS01900	PWY-7124	ethylene biosynthesis V (engineered)
MADAR_RS01900	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MADAR_RS01930	PWY-5669	phosphatidylethanolamine biosynthesis I
MADAR_RS01955	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
MADAR_RS01955	PWY-7177	UTP and CTP dephosphorylation II
MADAR_RS01955	PWY-7185	UTP and CTP dephosphorylation I
MADAR_RS01965	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MADAR_RS01970	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
MADAR_RS01970	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
MADAR_RS01975	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MADAR_RS01975	PWY-5723	Rubisco shunt
MADAR_RS01995	PWY-2941	L-lysine biosynthesis II
MADAR_RS01995	PWY-2942	L-lysine biosynthesis III
MADAR_RS01995	PWY-5097	L-lysine biosynthesis VI
MADAR_RS02005	PWY-5381	pyridine nucleotide cycling (plants)
MADAR_RS02035	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
MADAR_RS02035	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
MADAR_RS02085	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
MADAR_RS02085	PWY-6174	mevalonate pathway II (archaea)
MADAR_RS02085	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
MADAR_RS02085	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
MADAR_RS02085	PWY-7102	bisabolene biosynthesis
MADAR_RS02085	PWY-7391	isoprene biosynthesis II (engineered)
MADAR_RS02085	PWY-7524	mevalonate pathway III (archaea)
MADAR_RS02085	PWY-7560	methylerythritol phosphate pathway II
MADAR_RS02085	PWY-922	mevalonate pathway I
MADAR_RS02110	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MADAR_RS02120	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MADAR_RS02220	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
MADAR_RS02220	PWY-6596	adenosine nucleotides degradation I
MADAR_RS02220	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
MADAR_RS02235	PWY-6749	CMP-legionaminate biosynthesis I
MADAR_RS02245	PWY-4381	fatty acid biosynthesis initiation I
MADAR_RS02245	PWY-5743	3-hydroxypropanoate cycle
MADAR_RS02245	PWY-5744	glyoxylate assimilation
MADAR_RS02245	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
MADAR_RS02245	PWY-6679	jadomycin biosynthesis
MADAR_RS02245	PWY-6722	candicidin biosynthesis
MADAR_RS02245	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MADAR_RS02250	PWY-3781	aerobic respiration I (cytochrome c)
MADAR_RS02250	PWY-4302	aerobic respiration III (alternative oxidase pathway)
MADAR_RS02250	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MADAR_RS02250	PWY-5690	TCA cycle II (plants and fungi)
MADAR_RS02250	PWY-6728	methylaspartate cycle
MADAR_RS02250	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MADAR_RS02250	PWY-7254	TCA cycle VII (acetate-producers)
MADAR_RS02250	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
MADAR_RS02255	PWY-3781	aerobic respiration I (cytochrome c)
MADAR_RS02255	PWY-4302	aerobic respiration III (alternative oxidase pathway)
MADAR_RS02255	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MADAR_RS02255	PWY-5690	TCA cycle II (plants and fungi)
MADAR_RS02255	PWY-6728	methylaspartate cycle
MADAR_RS02255	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MADAR_RS02255	PWY-7254	TCA cycle VII (acetate-producers)
MADAR_RS02255	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
MADAR_RS02265	PWY-6823	molybdenum cofactor biosynthesis
MADAR_RS02265	PWY-6891	thiazole biosynthesis II (Bacillus)
MADAR_RS02265	PWY-6892	thiazole biosynthesis I (E. coli)
MADAR_RS02265	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
MADAR_RS02280	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
MADAR_RS02280	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
MADAR_RS02295	PWY-7723	MADAR_RS02295
MADAR_RS02305	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MADAR_RS02340	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MADAR_RS02340	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MADAR_RS02360	PWY-3961	phosphopantothenate biosynthesis II
MADAR_RS02390	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MADAR_RS02390	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MADAR_RS02450	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
MADAR_RS02450	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
MADAR_RS02450	PWY-6936	seleno-amino acid biosynthesis
MADAR_RS02450	PWY-702	L-methionine biosynthesis II
MADAR_RS02465	PWY-4381	fatty acid biosynthesis initiation I
MADAR_RS02500	PWY-1042	glycolysis IV (plant cytosol)
MADAR_RS02500	PWY-5484	glycolysis II (from fructose 6-phosphate)
MADAR_RS02500	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MADAR_RS02500	PWY-7003	glycerol degradation to butanol
MADAR_RS02510	PWY-6614	tetrahydrofolate biosynthesis
MADAR_RS02520	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MADAR_RS02520	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MADAR_RS02595	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
MADAR_RS02595	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
MADAR_RS02595	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
MADAR_RS02610	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MADAR_RS02610	PWY-6416	quinate degradation II
MADAR_RS02610	PWY-6707	gallate biosynthesis
MADAR_RS02640	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MADAR_RS02640	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
MADAR_RS02645	PWY-6167	flavin biosynthesis II (archaea)
MADAR_RS02645	PWY-6168	flavin biosynthesis III (fungi)
MADAR_RS02645	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MADAR_RS02650	PWY-7294	xylose degradation IV
MADAR_RS02650	PWY-7295	L-arabinose degradation IV
MADAR_RS02660	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MADAR_RS02665	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
MADAR_RS02665	PWY-6167	flavin biosynthesis II (archaea)
MADAR_RS02665	PWY-6168	flavin biosynthesis III (fungi)
MADAR_RS02695	PWY-40	putrescine biosynthesis I
MADAR_RS02695	PWY-43	putrescine biosynthesis II
MADAR_RS02695	PWY-6305	putrescine biosynthesis IV
MADAR_RS02695	PWY-6834	spermidine biosynthesis III
MADAR_RS02700	PWY-40	putrescine biosynthesis I
MADAR_RS02700	PWY-6305	putrescine biosynthesis IV
MADAR_RS02705	PWY-7205	CMP phosphorylation
MADAR_RS02710	PWY-5367	petroselinate biosynthesis
MADAR_RS02710	PWY-5515	L-arabinose degradation II
MADAR_RS02710	PWY-5525	D-glucuronate degradation I
MADAR_RS02710	PWY-5971	palmitate biosynthesis II (bacteria and plants)
MADAR_RS02710	PWY-5973	<i>cis</i>-vaccenate biosynthesis
MADAR_RS02710	PWY-5989	stearate biosynthesis II (bacteria and plants)
MADAR_RS02710	PWY-5994	palmitate biosynthesis I (animals and fungi)
MADAR_RS02710	PWY-6113	superpathway of mycolate biosynthesis
MADAR_RS02710	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
MADAR_RS02710	PWY-6519	8-amino-7-oxononanoate biosynthesis I
MADAR_RS02710	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MADAR_RS02710	PWY-7663	gondoate biosynthesis (anaerobic)
MADAR_RS02710	PWY-7664	oleate biosynthesis IV (anaerobic)
MADAR_RS02710	PWYG-321	mycolate biosynthesis
MADAR_RS02715	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
MADAR_RS02745	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MADAR_RS02745	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MADAR_RS02780	PWY-1042	glycolysis IV (plant cytosol)
MADAR_RS02780	PWY-5484	glycolysis II (from fructose 6-phosphate)
MADAR_RS02780	PWY-6901	superpathway of glucose and xylose degradation
MADAR_RS02780	PWY-7003	glycerol degradation to butanol
MADAR_RS02795	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
MADAR_RS02800	PWY-5392	reductive TCA cycle II
MADAR_RS02800	PWY-5537	pyruvate fermentation to acetate V
MADAR_RS02800	PWY-5538	pyruvate fermentation to acetate VI
MADAR_RS02800	PWY-5690	TCA cycle II (plants and fungi)
MADAR_RS02800	PWY-5913	TCA cycle VI (obligate autotrophs)
MADAR_RS02800	PWY-6728	methylaspartate cycle
MADAR_RS02800	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MADAR_RS02800	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MADAR_RS02805	PWY-2201	folate transformations I
MADAR_RS02805	PWY-5497	purine nucleobases degradation II (anaerobic)
MADAR_RS02805	PWY-5971	palmitate biosynthesis II (bacteria and plants)
MADAR_RS02805	PWY-5973	<i>cis</i>-vaccenate biosynthesis
MADAR_RS02805	PWY-5989	stearate biosynthesis II (bacteria and plants)
MADAR_RS02805	PWY-5994	palmitate biosynthesis I (animals and fungi)
MADAR_RS02805	PWY-6113	superpathway of mycolate biosynthesis
MADAR_RS02805	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
MADAR_RS02805	PWY-6519	8-amino-7-oxononanoate biosynthesis I
MADAR_RS02805	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
MADAR_RS02805	PWY-7663	gondoate biosynthesis (anaerobic)
MADAR_RS02805	PWY-7664	oleate biosynthesis IV (anaerobic)
MADAR_RS02805	PWYG-321	mycolate biosynthesis
MADAR_RS02860	PWY-6823	molybdenum cofactor biosynthesis
MADAR_RS02860	PWY-6891	thiazole biosynthesis II (Bacillus)
MADAR_RS02860	PWY-6892	thiazole biosynthesis I (E. coli)
MADAR_RS02860	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
MADAR_RS02950	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
