locus-tag class description DQQ01_RS00015 PF00128 Alpha amylase, catalytic domain DQQ01_RS00020 PF08244 Glycosyl hydrolases family 32 C terminal DQQ01_RS00020 PF00251 Glycosyl hydrolases family 32 N-terminal domain DQQ01_RS00025 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS00030 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS00040 PF00356 Bacterial regulatory proteins, lacI family DQQ01_RS00045 PF01380 SIS domain DQQ01_RS00045 PF01418 Helix-turn-helix domain, rpiR family DQQ01_RS00050 PF00480 ROK family DQQ01_RS00055 PF04074 YhcH/YjgK/YiaL DQQ01_RS00060 PF00474 Sodium:solute symporter family DQQ01_RS00065 PF00701 Dihydrodipicolinate synthetase family DQQ01_RS00070 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DQQ01_RS00075 PF01979 Amidohydrolase family DQQ01_RS00085 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DQQ01_RS00085 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DQQ01_RS00095 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS00100 PF13416 Bacterial extracellular solute-binding protein DQQ01_RS00105 PF12833 Helix-turn-helix domain DQQ01_RS00105 PF02311 AraC-like ligand binding domain DQQ01_RS00110 PF01541 GIY-YIG catalytic domain DQQ01_RS00130 PF06962 Putative rRNA methylase DQQ01_RS00135 PF01053 Cys/Met metabolism PLP-dependent enzyme DQQ01_RS00145 PF01554 MatE DQQ01_RS00215 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DQQ01_RS00215 PF00703 Glycosyl hydrolases family 2 DQQ01_RS00215 PF16353 Domain of unknown function(DUF4981) DQQ01_RS00215 PF02929 Beta galactosidase small chain DQQ01_RS00215 PF02837 Glycosyl hydrolases family 2, sugar binding domain DQQ01_RS00220 PF17853 GGDEF-like domain DQQ01_RS00220 PF12833 Helix-turn-helix domain DQQ01_RS00235 PF03989 DNA gyrase C-terminal domain, beta-propeller DQQ01_RS00235 PF00521 DNA gyrase/topoisomerase IV, subunit A DQQ01_RS00240 PF01751 Toprim domain DQQ01_RS00240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS00240 PF00204 DNA gyrase B DQQ01_RS00240 PF00986 DNA gyrase B subunit, carboxyl terminus DQQ01_RS00245 PF13476 AAA domain DQQ01_RS00255 PF00712 DNA polymerase III beta subunit, N-terminal domain DQQ01_RS00255 PF02768 DNA polymerase III beta subunit, C-terminal domain DQQ01_RS00255 PF02767 DNA polymerase III beta subunit, central domain DQQ01_RS00260 PF00308 Bacterial dnaA protein DQQ01_RS00260 PF11638 DnaA N-terminal domain DQQ01_RS00260 PF08299 Bacterial dnaA protein helix-turn-helix DQQ01_RS00265 PF00468 Ribosomal protein L34 DQQ01_RS00270 PF00825 Ribonuclease P DQQ01_RS00275 PF01809 Putative membrane protein insertion efficiency factor DQQ01_RS00280 PF02096 60Kd inner membrane protein DQQ01_RS00285 PF14804 Jag N-terminus DQQ01_RS00285 PF01424 R3H domain DQQ01_RS00290 PF10396 GTP-binding protein TrmE N-terminus DQQ01_RS00290 PF12631 MnmE helical domain DQQ01_RS00290 PF01926 50S ribosome-binding GTPase DQQ01_RS00300 PF02527 rRNA small subunit methyltransferase G DQQ01_RS00305 PF00005 ABC transporter DQQ01_RS00330 PF13614 AAA domain DQQ01_RS00335 PF02195 ParB-like nuclease domain DQQ01_RS00335 PF17762 HTH domain found in ParB protein DQQ01_RS00345 PF02403 Seryl-tRNA synthetase N-terminal domain DQQ01_RS00345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DQQ01_RS00355 PF02743 Cache domain DQQ01_RS00355 PF00672 HAMP domain DQQ01_RS00355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS00355 PF06580 Histidine kinase DQQ01_RS00360 PF02954 Bacterial regulatory protein, Fis family DQQ01_RS00360 PF00072 Response regulator receiver domain DQQ01_RS00360 PF00158 Sigma-54 interaction domain DQQ01_RS00370 PF12833 Helix-turn-helix domain DQQ01_RS00370 PF01965 DJ-1/PfpI family DQQ01_RS00380 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS00385 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS00425 PF00672 HAMP domain DQQ01_RS00425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS00425 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS00430 PF04205 FMN-binding domain DQQ01_RS00430 PF12801 4Fe-4S binding domain DQQ01_RS00435 PF14602 Hexapeptide repeat of succinyl-transferase DQQ01_RS00435 PF12464 Maltose acetyltransferase DQQ01_RS00455 PF14492 Elongation Factor G, domain II DQQ01_RS00455 PF00679 Elongation factor G C-terminus DQQ01_RS00455 PF00009 Elongation factor Tu GTP binding domain DQQ01_RS00455 PF03764 Elongation factor G, domain IV DQQ01_RS00465 PF08241 Methyltransferase domain DQQ01_RS00470 PF04539 Sigma-70 region 3 DQQ01_RS00470 PF04545 Sigma-70, region 4 DQQ01_RS00470 PF04542 Sigma-70 region 2 DQQ01_RS00525 PF01544 CorA-like Mg2+ transporter protein DQQ01_RS00575 PF04203 Sortase domain DQQ01_RS00640 PF03814 Potassium-transporting ATPase A subunit DQQ01_RS00650 PF02669 K+-transporting ATPase, c chain DQQ01_RS00665 PF02254 TrkA-N domain DQQ01_RS00665 PF02080 TrkA-C domain DQQ01_RS00675 PF13493 Domain of unknown function (DUF4118) DQQ01_RS00675 PF02702 Osmosensitive K+ channel His kinase sensor domain DQQ01_RS00675 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS00675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS00680 PF00072 Response regulator receiver domain DQQ01_RS00680 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS00690 PF00692 dUTPase DQQ01_RS00715 PF01327 Polypeptide deformylase DQQ01_RS00730 PF13476 AAA domain DQQ01_RS00795 PF06908 YspA SLOG family DQQ01_RS00805 PF00692 dUTPase DQQ01_RS00820 PF17191 RecG wedge domain DQQ01_RS00820 PF13749 Putative ATP-dependent DNA helicase recG C-terminal DQQ01_RS00820 PF00270 DEAD/DEAH box helicase DQQ01_RS00840 PF01048 Phosphorylase superfamily DQQ01_RS00845 PF01676 Metalloenzyme superfamily DQQ01_RS00855 PF13411 MerR HTH family regulatory protein DQQ01_RS00880 PF13614 AAA domain DQQ01_RS00895 PF04203 Sortase domain DQQ01_RS00910 PF02719 Polysaccharide biosynthesis protein DQQ01_RS00915 PF02397 Bacterial sugar transferase DQQ01_RS00920 PF03328 HpcH/HpaI aldolase/citrate lyase family DQQ01_RS00925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DQQ01_RS00925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DQQ01_RS00945 PF03553 Na+/H+ antiporter family DQQ01_RS00950 PF13439 Glycosyltransferase Family 4 DQQ01_RS00950 PF00534 Glycosyl transferases group 1 DQQ01_RS00955 PF00535 Glycosyl transferase family 2 DQQ01_RS00975 PF00535 Glycosyl transferase family 2 DQQ01_RS00980 PF00535 Glycosyl transferase family 2 DQQ01_RS00985 PF00535 Glycosyl transferase family 2 DQQ01_RS00985 PF01501 Glycosyl transferase family 8 DQQ01_RS01000 PF00535 Glycosyl transferase family 2 DQQ01_RS01005 PF00535 Glycosyl transferase family 2 DQQ01_RS01015 PF00535 Glycosyl transferase family 2 DQQ01_RS01045 PF13509 S1 domain DQQ01_RS01045 PF17783 CvfB-like winged helix domain DQQ01_RS01050 PF08241 Methyltransferase domain DQQ01_RS01055 PF02811 PHP domain DQQ01_RS01055 PF14579 Helix-hairpin-helix motif DQQ01_RS01055 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DQQ01_RS01055 PF01336 OB-fold nucleic acid binding domain DQQ01_RS01055 PF07733 Bacterial DNA polymerase III alpha NTPase domain DQQ01_RS01060 PF00365 Phosphofructokinase DQQ01_RS01065 PF08032 RNA 2'-O ribose methyltransferase substrate binding DQQ01_RS01065 PF00588 SpoU rRNA Methylase family DQQ01_RS01070 PF07486 Cell Wall Hydrolase DQQ01_RS01070 PF01471 Putative peptidoglycan binding domain DQQ01_RS01095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DQQ01_RS01095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DQQ01_RS01100 PF02237 Biotin protein ligase C terminal domain DQQ01_RS01100 PF08279 HTH domain DQQ01_RS01100 PF03099 Biotin/lipoate A/B protein ligase family DQQ01_RS01110 PF03309 Type III pantothenate kinase DQQ01_RS01115 PF01207 Dihydrouridine synthase (Dus) DQQ01_RS01125 PF00152 tRNA synthetases class II (D, K and N) DQQ01_RS01125 PF01336 OB-fold nucleic acid binding domain DQQ01_RS01140 PF13614 AAA domain DQQ01_RS01145 PF02195 ParB-like nuclease domain DQQ01_RS01145 PF17762 HTH domain found in ParB protein DQQ01_RS01150 PF01979 Amidohydrolase family DQQ01_RS01155 PF12852 Cupin DQQ01_RS01155 PF12833 Helix-turn-helix domain DQQ01_RS01165 PF00703 Glycosyl hydrolases family 2 DQQ01_RS01165 PF16355 Domain of unknown function (DUF4982) DQQ01_RS01165 PF02837 Glycosyl hydrolases family 2, sugar binding domain DQQ01_RS01165 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DQQ01_RS01165 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DQQ01_RS01215 PF01381 Helix-turn-helix DQQ01_RS01220 PF00817 impB/mucB/samB family DQQ01_RS01220 PF11799 impB/mucB/samB family C-terminal domain DQQ01_RS01220 PF11798 IMS family HHH motif DQQ01_RS01255 PF07690 Major Facilitator Superfamily DQQ01_RS01310 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DQQ01_RS01315 PF04321 RmlD substrate binding domain DQQ01_RS01320 PF16363 GDP-mannose 4,6 dehydratase DQQ01_RS01325 PF00483 Nucleotidyl transferase DQQ01_RS01335 PF02311 AraC-like ligand binding domain DQQ01_RS01335 PF12833 Helix-turn-helix domain DQQ01_RS01340 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DQQ01_RS01340 PF00703 Glycosyl hydrolases family 2 DQQ01_RS01340 PF02837 Glycosyl hydrolases family 2, sugar binding domain DQQ01_RS01340 PF16355 Domain of unknown function (DUF4982) DQQ01_RS01350 PF00011 Hsp20/alpha crystallin family DQQ01_RS01430 PF00563 EAL domain DQQ01_RS01430 PF08447 PAS fold DQQ01_RS01430 PF05231 MASE1 DQQ01_RS01430 PF08448 PAS fold DQQ01_RS01430 PF13426 PAS domain DQQ01_RS01430 PF00990 Diguanylate cyclase, GGDEF domain DQQ01_RS01435 PF00291 Pyridoxal-phosphate dependent enzyme DQQ01_RS01475 PF06480 FtsH Extracellular DQQ01_RS01475 PF17862 AAA+ lid domain DQQ01_RS01475 PF00004 ATPase family associated with various cellular activities (AAA) DQQ01_RS01475 PF01434 Peptidase family M41 DQQ01_RS01480 PF06177 QueT transporter DQQ01_RS01495 PF00398 Ribosomal RNA adenine dimethylase DQQ01_RS01500 PF00480 ROK family DQQ01_RS01525 PF00575 S1 RNA binding domain DQQ01_RS01535 PF01613 Flavin reductase like domain DQQ01_RS01540 PF01202 Shikimate kinase DQQ01_RS01545 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DQQ01_RS01550 PF02773 S-adenosylmethionine synthetase, C-terminal domain DQQ01_RS01550 PF02772 S-adenosylmethionine synthetase, central domain DQQ01_RS01550 PF00438 S-adenosylmethionine synthetase, N-terminal domain DQQ01_RS01555 PF00466 Ribosomal protein L10 DQQ01_RS01560 PF00542 Ribosomal protein L7/L12 C-terminal domain DQQ01_RS01560 PF16320 Ribosomal protein L7/L12 dimerisation domain DQQ01_RS01570 PF05000 RNA polymerase Rpb1, domain 4 DQQ01_RS01570 PF04983 RNA polymerase Rpb1, domain 3 DQQ01_RS01570 PF04997 RNA polymerase Rpb1, domain 1 DQQ01_RS01570 PF00623 RNA polymerase Rpb1, domain 2 DQQ01_RS01570 PF04998 RNA polymerase Rpb1, domain 5 DQQ01_RS01575 PF01047 MarR family DQQ01_RS01575 PF00480 ROK family DQQ01_RS01585 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS01590 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS01595 PF13416 Bacterial extracellular solute-binding protein DQQ01_RS01605 PF00164 Ribosomal protein S12/S23 DQQ01_RS01610 PF00177 Ribosomal protein S7p/S5e DQQ01_RS01615 PF03144 Elongation factor Tu domain 2 DQQ01_RS01615 PF00009 Elongation factor Tu GTP binding domain DQQ01_RS01615 PF03764 Elongation factor G, domain IV DQQ01_RS01615 PF14492 Elongation Factor G, domain II DQQ01_RS01615 PF00679 Elongation factor G C-terminus DQQ01_RS01620 PF03144 Elongation factor Tu domain 2 DQQ01_RS01620 PF00009 Elongation factor Tu GTP binding domain DQQ01_RS01620 PF03143 Elongation factor Tu C-terminal domain DQQ01_RS01630 PF01381 Helix-turn-helix DQQ01_RS01640 PF00589 Phage integrase family DQQ01_RS01640 PF02899 Phage integrase, N-terminal SAM-like domain DQQ01_RS01675 PF01555 DNA methylase DQQ01_RS01685 PF01381 Helix-turn-helix DQQ01_RS01710 PF02311 AraC-like ligand binding domain DQQ01_RS01710 PF12833 Helix-turn-helix domain DQQ01_RS01720 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS01725 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS01730 PF16875 Glycosyl hydrolase family 36 N-terminal domain DQQ01_RS01730 PF16874 Glycosyl hydrolase family 36 C-terminal domain DQQ01_RS01740 PF13181 Tetratricopeptide repeat DQQ01_RS01740 PF17128 Domain of unknown function (DUF5107) DQQ01_RS01745 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DQQ01_RS01750 PF01112 Asparaginase DQQ01_RS01760 PF07905 Purine catabolism regulatory protein-like family DQQ01_RS01760 PF13556 PucR C-terminal helix-turn-helix domain DQQ01_RS01760 PF17853 GGDEF-like domain DQQ01_RS01765 PF02607 B12 binding domain DQQ01_RS01765 PF02310 B12 binding domain DQQ01_RS01775 PF00111 2Fe-2S iron-sulfur cluster binding domain DQQ01_RS01775 PF00175 Oxidoreductase NAD-binding domain DQQ01_RS01775 PF00970 Oxidoreductase FAD-binding domain DQQ01_RS01780 PF02607 B12 binding domain DQQ01_RS01780 PF02310 B12 binding domain DQQ01_RS01795 PF01554 MatE DQQ01_RS01800 PF02915 Rubrerythrin DQQ01_RS01810 PF01556 DnaJ C terminal domain DQQ01_RS01810 PF00226 DnaJ domain DQQ01_RS01810 PF00684 DnaJ central domain DQQ01_RS01825 PF13426 PAS domain DQQ01_RS01825 PF00672 HAMP domain DQQ01_RS01825 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS01825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS01830 PF00072 Response regulator receiver domain DQQ01_RS01830 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS01835 PF02690 Na+/Pi-cotransporter DQQ01_RS01845 PF07859 alpha/beta hydrolase fold DQQ01_RS01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS01860 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS01860 PF00989 PAS fold DQQ01_RS01860 PF11808 Phosphate regulon sensor protein PhoR DQQ01_RS01865 PF00072 Response regulator receiver domain DQQ01_RS01865 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS01870 PF01264 Chorismate synthase DQQ01_RS01880 PF17763 Glutaminase/Asparaginase C-terminal domain DQQ01_RS01880 PF00710 Asparaginase, N-terminal DQQ01_RS01885 PF01170 Putative RNA methylase family UPF0020 DQQ01_RS01885 PF10672 S-adenosylmethionine-dependent methyltransferase DQQ01_RS01885 PF02926 THUMP domain DQQ01_RS01900 PF00117 Glutamine amidotransferase class-I DQQ01_RS01925 PF12897 Alanine-glyoxylate amino-transferase DQQ01_RS01935 PF07478 D-ala D-ala ligase C-terminus DQQ01_RS01935 PF01820 D-ala D-ala ligase N-terminus DQQ01_RS01940 PF08245 Mur ligase middle domain DQQ01_RS01940 PF02875 Mur ligase family, glutamate ligase domain DQQ01_RS01940 PF01225 Mur ligase family, catalytic domain DQQ01_RS01945 PF01235 Sodium:alanine symporter family DQQ01_RS01960 PF08239 Bacterial SH3 domain DQQ01_RS01960 PF00877 NlpC/P60 family DQQ01_RS01960 PF01476 LysM domain DQQ01_RS01965 PF02056 Family 4 glycosyl hydrolase DQQ01_RS01965 PF11975 Family 4 glycosyl hydrolase C-terminal domain DQQ01_RS01980 PF01554 MatE DQQ01_RS02005 PF13472 GDSL-like Lipase/Acylhydrolase family DQQ01_RS02020 PF00437 Type II/IV secretion system protein DQQ01_RS02065 PF01694 Rhomboid family DQQ01_RS02070 PF02743 Cache domain DQQ01_RS02070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS02070 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS02075 PF01230 HIT domain DQQ01_RS02085 PF03033 Glycosyltransferase family 28 N-terminal domain DQQ01_RS02085 PF04101 Glycosyltransferase family 28 C-terminal domain DQQ01_RS02110 PF13361 UvrD-like helicase C-terminal domain DQQ01_RS02110 PF00580 UvrD/REP helicase N-terminal domain DQQ01_RS02120 PF01048 Phosphorylase superfamily DQQ01_RS02150 PF01520 N-acetylmuramoyl-L-alanine amidase DQQ01_RS02155 PF03481 Putative GTP-binding controlling metal-binding DQQ01_RS02155 PF01300 Telomere recombination DQQ01_RS02160 PF02502 Ribose/Galactose Isomerase DQQ01_RS02170 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DQQ01_RS02180 PF02082 Transcriptional regulator DQQ01_RS02200 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DQQ01_RS02200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DQQ01_RS02205 PF01757 Acyltransferase family DQQ01_RS02220 PF01554 MatE DQQ01_RS02225 PF04073 Aminoacyl-tRNA editing domain DQQ01_RS02230 PF13411 MerR HTH family regulatory protein DQQ01_RS02235 PF00815 Histidinol dehydrogenase DQQ01_RS02245 PF13847 Methyltransferase domain DQQ01_RS02250 PF01430 Hsp33 protein DQQ01_RS02255 PF00795 Carbon-nitrogen hydrolase DQQ01_RS02255 PF02540 NAD synthase DQQ01_RS02260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DQQ01_RS02260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DQQ01_RS02275 PF12705 PD-(D/E)XK nuclease superfamily DQQ01_RS02280 PF00580 UvrD/REP helicase N-terminal domain DQQ01_RS02280 PF13361 UvrD-like helicase C-terminal domain DQQ01_RS02280 PF12705 PD-(D/E)XK nuclease superfamily DQQ01_RS02305 PF04024 PspC domain DQQ01_RS02320 PF10458 Valyl tRNA synthetase tRNA binding arm DQQ01_RS02320 PF08264 Anticodon-binding domain of tRNA DQQ01_RS02320 PF00133 tRNA synthetases class I (I, L, M and V) DQQ01_RS02330 PF08245 Mur ligase middle domain DQQ01_RS02330 PF02875 Mur ligase family, glutamate ligase domain DQQ01_RS02340 PF01740 STAS domain DQQ01_RS02345 PF13581 Histidine kinase-like ATPase domain DQQ01_RS02350 PF04542 Sigma-70 region 2 DQQ01_RS02350 PF04539 Sigma-70 region 3 DQQ01_RS02350 PF04545 Sigma-70, region 4 DQQ01_RS02370 PF07451 Stage V sporulation protein AD (SpoVAD) DQQ01_RS02380 PF00465 Iron-containing alcohol dehydrogenase DQQ01_RS02385 PF00936 BMC domain DQQ01_RS02390 PF10662 Ethanolamine utilisation - propanediol utilisation DQQ01_RS02395 PF00072 Response regulator receiver domain DQQ01_RS02395 PF03861 ANTAR domain DQQ01_RS02400 PF12282 Signal transduction histidine kinase DQQ01_RS02400 PF07568 Histidine kinase DQQ01_RS02400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS02405 PF06277 Ethanolamine utilisation protein EutA DQQ01_RS02415 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DQQ01_RS02420 PF00936 BMC domain DQQ01_RS02425 PF00936 BMC domain DQQ01_RS02435 PF00465 Iron-containing alcohol dehydrogenase DQQ01_RS02435 PF00171 Aldehyde dehydrogenase family DQQ01_RS02440 PF00936 BMC domain DQQ01_RS02445 PF00936 BMC domain DQQ01_RS02455 PF06130 Phosphate propanoyltransferase DQQ01_RS02470 PF03319 Ethanolamine utilisation protein EutN/carboxysome DQQ01_RS02475 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DQQ01_RS02475 PF12838 4Fe-4S dicluster domain DQQ01_RS02475 PF13375 RnfC Barrel sandwich hybrid domain DQQ01_RS02475 PF10531 SLBB domain DQQ01_RS02485 PF04346 Ethanolamine utilisation protein, EutH DQQ01_RS02500 PF00899 ThiF family DQQ01_RS02505 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DQQ01_RS02505 PF01565 FAD binding domain DQQ01_RS02510 PF03668 P-loop ATPase protein family DQQ01_RS02515 PF14527 WhiA LAGLIDADG-like domain DQQ01_RS02515 PF10298 WhiA N-terminal LAGLIDADG-like domain DQQ01_RS02515 PF02650 WhiA C-terminal HTH domain DQQ01_RS02520 PF00381 PTS HPr component phosphorylation site DQQ01_RS02530 PF02127 Aminopeptidase I zinc metalloprotease (M18) DQQ01_RS02540 PF00338 Ribosomal protein S10p/S20e DQQ01_RS02545 PF00297 Ribosomal protein L3 DQQ01_RS02550 PF00573 Ribosomal protein L4/L1 family DQQ01_RS02555 PF00276 Ribosomal protein L23 DQQ01_RS02560 PF00181 Ribosomal Proteins L2, RNA binding domain DQQ01_RS02560 PF03947 Ribosomal Proteins L2, C-terminal domain DQQ01_RS02565 PF00203 Ribosomal protein S19 DQQ01_RS02570 PF00237 Ribosomal protein L22p/L17e DQQ01_RS02575 PF07650 KH domain DQQ01_RS02575 PF00189 Ribosomal protein S3, C-terminal domain DQQ01_RS02580 PF00252 Ribosomal protein L16p/L10e DQQ01_RS02585 PF00831 Ribosomal L29 protein DQQ01_RS02600 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DQQ01_RS02600 PF00467 KOW motif DQQ01_RS02605 PF00673 ribosomal L5P family C-terminus DQQ01_RS02605 PF00281 Ribosomal protein L5 DQQ01_RS02610 PF00253 Ribosomal protein S14p/S29e DQQ01_RS02615 PF00410 Ribosomal protein S8 DQQ01_RS02620 PF00347 Ribosomal protein L6 DQQ01_RS02625 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DQQ01_RS02630 PF00333 Ribosomal protein S5, N-terminal domain DQQ01_RS02630 PF03719 Ribosomal protein S5, C-terminal domain DQQ01_RS02635 PF00327 Ribosomal protein L30p/L7e DQQ01_RS02640 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DQQ01_RS02645 PF00344 SecY translocase DQQ01_RS02650 PF05191 Adenylate kinase, active site lid DQQ01_RS02655 PF00557 Metallopeptidase family M24 DQQ01_RS02665 PF01176 Translation initiation factor 1A / IF-1 DQQ01_RS02680 PF02683 Cytochrome C biogenesis protein transmembrane region DQQ01_RS02695 PF07685 CobB/CobQ-like glutamine amidotransferase domain DQQ01_RS02700 PF08245 Mur ligase middle domain DQQ01_RS02700 PF08353 Domain of unknown function (DUF1727) DQQ01_RS02710 PF00464 Serine hydroxymethyltransferase DQQ01_RS02715 PF07992 Pyridine nucleotide-disulphide oxidoreductase DQQ01_RS02720 PF00085 Thioredoxin DQQ01_RS02725 PF04607 Region found in RelA / SpoT proteins DQQ01_RS02730 PF00572 Ribosomal protein L13 DQQ01_RS02745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DQQ01_RS02745 PF03466 LysR substrate binding domain DQQ01_RS02775 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS02780 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS02785 PF12833 Helix-turn-helix domain DQQ01_RS02785 PF00072 Response regulator receiver domain DQQ01_RS02790 PF07694 5TMR of 5TMR-LYT DQQ01_RS02790 PF13492 GAF domain DQQ01_RS02790 PF06580 Histidine kinase DQQ01_RS02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS02795 PF02449 Beta-galactosidase DQQ01_RS02795 PF08533 Beta-galactosidase C-terminal domain DQQ01_RS02795 PF08532 Beta-galactosidase trimerisation domain DQQ01_RS02805 PF04397 LytTr DNA-binding domain DQQ01_RS02805 PF00072 Response regulator receiver domain DQQ01_RS02810 PF02311 AraC-like ligand binding domain DQQ01_RS02810 PF12833 Helix-turn-helix domain DQQ01_RS02820 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS02825 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS02850 PF12724 Flavodoxin domain DQQ01_RS02885 PF01522 Polysaccharide deacetylase DQQ01_RS02895 PF00931 NB-ARC domain DQQ01_RS02895 PF03704 Bacterial transcriptional activator domain DQQ01_RS02895 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS02900 PF00221 Aromatic amino acid lyase DQQ01_RS02905 PF03553 Na+/H+ antiporter family DQQ01_RS02905 PF13726 Na+-H+ antiporter family DQQ01_RS02910 PF00301 Rubredoxin DQQ01_RS02915 PF01263 Aldose 1-epimerase DQQ01_RS02920 PF01678 Diaminopimelate epimerase DQQ01_RS02925 PF01554 MatE DQQ01_RS02930 PF13597 Anaerobic ribonucleoside-triphosphate reductase DQQ01_RS02930 PF03477 ATP cone domain DQQ01_RS02935 PF00999 Sodium/hydrogen exchanger family DQQ01_RS02950 PF00633 Helix-hairpin-helix motif DQQ01_RS02950 PF00730 HhH-GPD superfamily base excision DNA repair protein DQQ01_RS02955 PF00929 Exonuclease DQQ01_RS02955 PF02811 PHP domain DQQ01_RS02955 PF11490 DNA polymerase III polC-type N-terminus II DQQ01_RS02955 PF14579 Helix-hairpin-helix motif DQQ01_RS02955 PF01336 OB-fold nucleic acid binding domain DQQ01_RS02955 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DQQ01_RS02955 PF07733 Bacterial DNA polymerase III alpha NTPase domain DQQ01_RS02960 PF02769 AIR synthase related protein, C-terminal domain DQQ01_RS02960 PF00586 AIR synthase related protein, N-terminal domain DQQ01_RS02960 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DQQ01_RS02975 PF00072 Response regulator receiver domain DQQ01_RS02975 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS02980 PF00488 MutS domain V DQQ01_RS02980 PF01713 Smr domain DQQ01_RS02985 PF13180 PDZ domain DQQ01_RS02990 PF01966 HD domain DQQ01_RS02990 PF01336 OB-fold nucleic acid binding domain DQQ01_RS02995 PF01938 TRAM domain DQQ01_RS02995 PF05958 tRNA (Uracil-5-)-methyltransferase DQQ01_RS03005 PF00258 Flavodoxin DQQ01_RS03005 PF00753 Metallo-beta-lactamase superfamily DQQ01_RS03015 PF03449 Transcription elongation factor, N-terminal DQQ01_RS03015 PF01272 Transcription elongation factor, GreA/GreB, C-term DQQ01_RS03020 PF02690 Na+/Pi-cotransporter DQQ01_RS03025 PF00072 Response regulator receiver domain DQQ01_RS03025 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS03030 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS03030 PF00989 PAS fold DQQ01_RS03030 PF16736 Single Cache-like DQQ01_RS03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS03035 PF02386 Cation transport protein DQQ01_RS03040 PF02254 TrkA-N domain DQQ01_RS03040 PF02080 TrkA-C domain DQQ01_RS03050 PF00171 Aldehyde dehydrogenase family DQQ01_RS03065 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS03075 PF01381 Helix-turn-helix DQQ01_RS03085 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DQQ01_RS03090 PF01965 DJ-1/PfpI family DQQ01_RS03090 PF12833 Helix-turn-helix domain DQQ01_RS03095 PF13186 Iron-sulfur cluster-binding domain DQQ01_RS03095 PF04055 Radical SAM superfamily DQQ01_RS03105 PF01636 Phosphotransferase enzyme family DQQ01_RS03110 PF01370 NAD dependent epimerase/dehydratase family DQQ01_RS03115 PF08903 Domain of unknown function (DUF1846) DQQ01_RS03120 PF00004 ATPase family associated with various cellular activities (AAA) DQQ01_RS03120 PF17862 AAA+ lid domain DQQ01_RS03120 PF01434 Peptidase family M41 DQQ01_RS03120 PF06480 FtsH Extracellular DQQ01_RS03125 PF01541 GIY-YIG catalytic domain DQQ01_RS03125 PF12826 Helix-hairpin-helix motif DQQ01_RS03125 PF02151 UvrB/uvrC motif DQQ01_RS03125 PF08459 UvrC Helix-hairpin-helix N-terminal DQQ01_RS03130 PF07475 HPr Serine kinase C-terminal domain DQQ01_RS03130 PF02603 HPr Serine kinase N terminus DQQ01_RS03135 PF00480 ROK family DQQ01_RS03140 PF00905 Penicillin binding protein transpeptidase domain DQQ01_RS03140 PF00912 Transglycosylase DQQ01_RS03145 PF09186 Domain of unknown function (DUF1949) DQQ01_RS03145 PF01205 Uncharacterized protein family UPF0029 DQQ01_RS03150 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DQQ01_RS03155 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DQQ01_RS03160 PF00814 Glycoprotease family DQQ01_RS03165 PF00583 Acetyltransferase (GNAT) family DQQ01_RS03180 PF00753 Metallo-beta-lactamase superfamily DQQ01_RS03185 PF00814 Glycoprotease family DQQ01_RS03190 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DQQ01_RS03275 PF13416 Bacterial extracellular solute-binding protein DQQ01_RS03280 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS03285 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS03290 PF07470 Glycosyl Hydrolase Family 88 DQQ01_RS03295 PF00884 Sulfatase DQQ01_RS03300 PF16347 Domain of unknown function (DUF4976) DQQ01_RS03300 PF00884 Sulfatase DQQ01_RS03335 PF00672 HAMP domain DQQ01_RS03335 PF02743 Cache domain DQQ01_RS03335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS03335 PF06580 Histidine kinase DQQ01_RS03340 PF12833 Helix-turn-helix domain DQQ01_RS03340 PF00072 Response regulator receiver domain DQQ01_RS03355 PF12010 Domain of unknown function (DUF3502) DQQ01_RS03365 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS03380 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DQQ01_RS03380 PF16355 Domain of unknown function (DUF4982) DQQ01_RS03380 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DQQ01_RS03380 PF00703 Glycosyl hydrolases family 2 DQQ01_RS03380 PF02837 Glycosyl hydrolases family 2, sugar binding domain DQQ01_RS03390 PF00860 Permease family DQQ01_RS03395 PF02557 D-alanyl-D-alanine carboxypeptidase DQQ01_RS03400 PF00005 ABC transporter DQQ01_RS03400 PF00664 ABC transporter transmembrane region DQQ01_RS03405 PF00664 ABC transporter transmembrane region DQQ01_RS03405 PF00005 ABC transporter DQQ01_RS03420 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS03420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS03420 PF13493 Domain of unknown function (DUF4118) DQQ01_RS03420 PF02702 Osmosensitive K+ channel His kinase sensor domain DQQ01_RS03425 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS03425 PF00072 Response regulator receiver domain DQQ01_RS03430 PF07687 Peptidase dimerisation domain DQQ01_RS03430 PF01546 Peptidase family M20/M25/M40 DQQ01_RS03435 PF03788 LrgA family DQQ01_RS03440 PF04172 LrgB-like family DQQ01_RS03455 PF00892 EamA-like transporter family DQQ01_RS03460 PF07664 Ferrous iron transport protein B C terminus DQQ01_RS03460 PF02421 Ferrous iron transport protein B DQQ01_RS03460 PF07670 Nucleoside recognition DQQ01_RS03460 PF17910 FeoB cytosolic helical domain DQQ01_RS03480 PF00128 Alpha amylase, catalytic domain DQQ01_RS03480 PF16657 Maltogenic Amylase, C-terminal domain DQQ01_RS03485 PF00294 pfkB family carbohydrate kinase DQQ01_RS03485 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DQQ01_RS03495 PF13416 Bacterial extracellular solute-binding protein DQQ01_RS03505 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS03510 PF00294 pfkB family carbohydrate kinase DQQ01_RS03520 PF04203 Sortase domain DQQ01_RS03525 PF02146 Sir2 family DQQ01_RS03535 PF01250 Ribosomal protein S6 DQQ01_RS03540 PF00436 Single-strand binding protein family DQQ01_RS03545 PF01084 Ribosomal protein S18 DQQ01_RS03550 PF02272 DHHA1 domain DQQ01_RS03550 PF01368 DHH family DQQ01_RS03555 PF01281 Ribosomal protein L9, N-terminal domain DQQ01_RS03555 PF03948 Ribosomal protein L9, C-terminal domain DQQ01_RS03560 PF00772 DnaB-like helicase N terminal domain DQQ01_RS03560 PF03796 DnaB-like helicase C terminal domain DQQ01_RS03565 PF01964 Radical SAM ThiC family DQQ01_RS03575 PF12838 4Fe-4S dicluster domain DQQ01_RS03585 PF05389 Negative regulator of genetic competence (MecA) DQQ01_RS03610 PF00005 ABC transporter DQQ01_RS03610 PF03459 TOBE domain DQQ01_RS03610 PF17912 MalK OB fold domain DQQ01_RS03620 PF02610 L-arabinose isomerase DQQ01_RS03620 PF11762 L-arabinose isomerase C-terminal domain DQQ01_RS03625 PF17853 GGDEF-like domain DQQ01_RS03625 PF13556 PucR C-terminal helix-turn-helix domain DQQ01_RS03625 PF05651 Putative sugar diacid recognition DQQ01_RS03635 PF12833 Helix-turn-helix domain DQQ01_RS03640 PF14310 Fibronectin type III-like domain DQQ01_RS03640 PF00933 Glycosyl hydrolase family 3 N terminal domain DQQ01_RS03640 PF01915 Glycosyl hydrolase family 3 C-terminal domain DQQ01_RS03640 PF07691 PA14 domain DQQ01_RS03650 PF18610 Periplasmic binding protein domain DQQ01_RS03650 PF13407 Periplasmic binding protein domain DQQ01_RS03655 PF00005 ABC transporter DQQ01_RS03660 PF02653 Branched-chain amino acid transport system / permease component DQQ01_RS03665 PF12833 Helix-turn-helix domain DQQ01_RS03665 PF00072 Response regulator receiver domain DQQ01_RS03670 PF00672 HAMP domain DQQ01_RS03670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS03670 PF06580 Histidine kinase DQQ01_RS03670 PF02743 Cache domain DQQ01_RS03680 PF13407 Periplasmic binding protein domain DQQ01_RS03685 PF01522 Polysaccharide deacetylase DQQ01_RS03690 PF00171 Aldehyde dehydrogenase family DQQ01_RS03690 PF00465 Iron-containing alcohol dehydrogenase DQQ01_RS03695 PF00009 Elongation factor Tu GTP binding domain DQQ01_RS03695 PF03144 Elongation factor Tu domain 2 DQQ01_RS03695 PF00679 Elongation factor G C-terminus DQQ01_RS03715 PF00701 Dihydrodipicolinate synthetase family DQQ01_RS03720 PF01113 Dihydrodipicolinate reductase, N-terminus DQQ01_RS03720 PF05173 Dihydrodipicolinate reductase, C-terminus DQQ01_RS03735 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DQQ01_RS03735 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DQQ01_RS03740 PF02810 SEC-C motif DQQ01_RS03740 PF01043 SecA preprotein cross-linking domain DQQ01_RS03740 PF07516 SecA Wing and Scaffold domain DQQ01_RS03740 PF07517 SecA DEAD-like domain DQQ01_RS03750 PF00472 RF-1 domain DQQ01_RS03750 PF03462 PCRF domain DQQ01_RS03760 PF03447 Homoserine dehydrogenase, NAD binding domain DQQ01_RS03760 PF01842 ACT domain DQQ01_RS03760 PF00742 Homoserine dehydrogenase DQQ01_RS03765 PF01676 Metalloenzyme superfamily DQQ01_RS03765 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase DQQ01_RS03785 PF16921 Tex protein YqgF-like domain DQQ01_RS03785 PF00575 S1 RNA binding domain DQQ01_RS03785 PF09371 Tex-like protein N-terminal domain DQQ01_RS03785 PF17674 HHH domain DQQ01_RS03795 PF01047 MarR family DQQ01_RS03805 PF12822 ECF transporter, substrate-specific component DQQ01_RS03810 PF00293 NUDIX domain DQQ01_RS03815 PF01594 AI-2E family transporter DQQ01_RS03820 PF02386 Cation transport protein DQQ01_RS03825 PF02254 TrkA-N domain DQQ01_RS03825 PF02080 TrkA-C domain DQQ01_RS03835 PF01268 Formate--tetrahydrofolate ligase DQQ01_RS03840 PF01226 Formate/nitrite transporter DQQ01_RS03850 PF02001 Protein of unknown function DUF134 DQQ01_RS03855 PF07992 Pyridine nucleotide-disulphide oxidoreductase DQQ01_RS03855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DQQ01_RS03860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DQQ01_RS03860 PF03466 LysR substrate binding domain DQQ01_RS03865 PF07992 Pyridine nucleotide-disulphide oxidoreductase DQQ01_RS03870 PF03601 Conserved hypothetical protein 698 DQQ01_RS03875 PF08281 Sigma-70, region 4 DQQ01_RS03875 PF04542 Sigma-70 region 2 DQQ01_RS03905 PF01554 MatE DQQ01_RS03910 PF00679 Elongation factor G C-terminus DQQ01_RS03910 PF14492 Elongation Factor G, domain II DQQ01_RS03910 PF03764 Elongation factor G, domain IV DQQ01_RS03910 PF00009 Elongation factor Tu GTP binding domain DQQ01_RS03920 PF00444 Ribosomal protein L36 DQQ01_RS03925 PF00416 Ribosomal protein S13/S18 DQQ01_RS03930 PF00411 Ribosomal protein S11 DQQ01_RS03935 PF00163 Ribosomal protein S4/S9 N-terminal domain DQQ01_RS03935 PF01479 S4 domain DQQ01_RS03940 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DQQ01_RS03940 PF01000 RNA polymerase Rpb3/RpoA insert domain DQQ01_RS03940 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DQQ01_RS03945 PF01196 Ribosomal protein L17 DQQ01_RS03950 PF00781 Diacylglycerol kinase catalytic domain DQQ01_RS03960 PF18318 Glutamine synthetase C-terminal domain DQQ01_RS03960 PF12437 Glutamine synthetase type III N terminal DQQ01_RS03960 PF00120 Glutamine synthetase, catalytic domain DQQ01_RS03970 PF06213 Cobalamin biosynthesis protein CobT DQQ01_RS03970 PF11775 Cobalamin biosynthesis protein CobT VWA domain DQQ01_RS03980 PF07905 Purine catabolism regulatory protein-like family DQQ01_RS03980 PF13556 PucR C-terminal helix-turn-helix domain DQQ01_RS03980 PF17853 GGDEF-like domain DQQ01_RS03985 PF00005 ABC transporter DQQ01_RS03990 PF02687 FtsX-like permease family DQQ01_RS03990 PF18075 FtsX extracellular domain DQQ01_RS03995 PF03572 Peptidase family S41 DQQ01_RS03995 PF00595 PDZ domain DQQ01_RS04000 PF00132 Bacterial transferase hexapeptide (six repeats) DQQ01_RS04000 PF12464 Maltose acetyltransferase DQQ01_RS04005 PF01066 CDP-alcohol phosphatidyltransferase DQQ01_RS04010 PF02660 Glycerol-3-phosphate acyltransferase DQQ01_RS04015 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase DQQ01_RS04015 PF04101 Glycosyltransferase family 28 C-terminal domain DQQ01_RS04025 PF03129 Anticodon binding domain DQQ01_RS04025 PF02824 TGS domain DQQ01_RS04025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DQQ01_RS04025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DQQ01_RS04030 PF01554 MatE DQQ01_RS04040 PF00209 Sodium:neurotransmitter symporter family DQQ01_RS04045 PF00707 Translation initiation factor IF-3, C-terminal domain DQQ01_RS04045 PF05198 Translation initiation factor IF-3, N-terminal domain DQQ01_RS04050 PF01632 Ribosomal protein L35 DQQ01_RS04055 PF00453 Ribosomal protein L20 DQQ01_RS04065 PF02595 Glycerate kinase family DQQ01_RS04070 PF13375 RnfC Barrel sandwich hybrid domain DQQ01_RS04070 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DQQ01_RS04070 PF13237 4Fe-4S dicluster domain DQQ01_RS04070 PF10531 SLBB domain DQQ01_RS04075 PF03116 NQR2, RnfD, RnfE family DQQ01_RS04090 PF02424 ApbE family DQQ01_RS04095 PF01522 Polysaccharide deacetylase DQQ01_RS04095 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain DQQ01_RS04115 PF01202 Shikimate kinase DQQ01_RS04125 PF00664 ABC transporter transmembrane region DQQ01_RS04125 PF00005 ABC transporter DQQ01_RS04130 PF00005 ABC transporter DQQ01_RS04130 PF00664 ABC transporter transmembrane region DQQ01_RS04160 PF16123 Hydroxyacylglutathione hydrolase C-terminus DQQ01_RS04160 PF00753 Metallo-beta-lactamase superfamily DQQ01_RS04165 PF00933 Glycosyl hydrolase family 3 N terminal domain DQQ01_RS04170 PF13419 Haloacid dehalogenase-like hydrolase DQQ01_RS04215 PF01751 Toprim domain DQQ01_RS04215 PF01131 DNA topoisomerase DQQ01_RS04220 PF00285 Citrate synthase, C-terminal domain DQQ01_RS04230 PF01132 Elongation factor P (EF-P) OB domain DQQ01_RS04230 PF08207 Elongation factor P (EF-P) KOW-like domain DQQ01_RS04230 PF09285 Elongation factor P, C-terminal DQQ01_RS04255 PF01479 S4 domain DQQ01_RS04255 PF00849 RNA pseudouridylate synthase DQQ01_RS04260 PF00533 BRCA1 C Terminus (BRCT) domain DQQ01_RS04260 PF01653 NAD-dependent DNA ligase adenylation domain DQQ01_RS04260 PF03120 NAD-dependent DNA ligase OB-fold domain DQQ01_RS04260 PF12826 Helix-hairpin-helix motif DQQ01_RS04265 PF13091 PLD-like domain DQQ01_RS04270 PF04204 Homoserine O-succinyltransferase DQQ01_RS04275 PF00356 Bacterial regulatory proteins, lacI family DQQ01_RS04285 PF01208 Uroporphyrinogen decarboxylase (URO-D) DQQ01_RS04295 PF02310 B12 binding domain DQQ01_RS04295 PF02607 B12 binding domain DQQ01_RS04300 PF01208 Uroporphyrinogen decarboxylase (URO-D) DQQ01_RS04325 PF01047 MarR family DQQ01_RS04330 PF01554 MatE DQQ01_RS04335 PF08125 Mannitol dehydrogenase C-terminal domain DQQ01_RS04335 PF01232 Mannitol dehydrogenase Rossmann domain DQQ01_RS04340 PF03786 D-mannonate dehydratase (UxuA) DQQ01_RS04355 PF02082 Transcriptional regulator DQQ01_RS04360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DQQ01_RS04360 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DQQ01_RS04360 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DQQ01_RS04360 PF10371 Domain of unknown function DQQ01_RS04360 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DQQ01_RS04365 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS04365 PF00072 Response regulator receiver domain DQQ01_RS04370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS04375 PF00005 ABC transporter DQQ01_RS04380 PF02687 FtsX-like permease family DQQ01_RS04385 PF10369 Small subunit of acetolactate synthase DQQ01_RS04390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DQQ01_RS04390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DQQ01_RS04390 PF00205 Thiamine pyrophosphate enzyme, central domain DQQ01_RS04400 PF01967 MoaC family DQQ01_RS04405 PF06463 Molybdenum Cofactor Synthesis C DQQ01_RS04405 PF04055 Radical SAM superfamily DQQ01_RS04410 PF00994 Probable molybdopterin binding domain DQQ01_RS04420 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS04425 PF08402 TOBE domain DQQ01_RS04425 PF00005 ABC transporter DQQ01_RS04430 PF01048 Phosphorylase superfamily DQQ01_RS04435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DQQ01_RS04440 PF01676 Metalloenzyme superfamily DQQ01_RS04445 PF01791 DeoC/LacD family aldolase DQQ01_RS04465 PF04304 Protein of unknown function (DUF454) DQQ01_RS04470 PF00005 ABC transporter DQQ01_RS04470 PF00664 ABC transporter transmembrane region DQQ01_RS04475 PF00664 ABC transporter transmembrane region DQQ01_RS04475 PF00005 ABC transporter DQQ01_RS04495 PF03553 Na+/H+ antiporter family DQQ01_RS04505 PF02311 AraC-like ligand binding domain DQQ01_RS04505 PF12833 Helix-turn-helix domain DQQ01_RS04510 PF04545 Sigma-70, region 4 DQQ01_RS04510 PF04539 Sigma-70 region 3 DQQ01_RS04510 PF04542 Sigma-70 region 2 DQQ01_RS04515 PF00072 Response regulator receiver domain DQQ01_RS04515 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS04520 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS04520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS04525 PF00005 ABC transporter DQQ01_RS04560 PF03807 NADP oxidoreductase coenzyme F420-dependent DQQ01_RS04560 PF14748 Pyrroline-5-carboxylate reductase dimerisation DQQ01_RS04575 PF01928 CYTH domain DQQ01_RS04590 PF01808 AICARFT/IMPCHase bienzyme DQQ01_RS04590 PF02142 MGS-like domain DQQ01_RS04595 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain DQQ01_RS04600 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DQQ01_RS04600 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DQQ01_RS04605 PF03129 Anticodon binding domain DQQ01_RS04605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DQQ01_RS04615 PF00365 Phosphofructokinase DQQ01_RS04620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS04620 PF07694 5TMR of 5TMR-LYT DQQ01_RS04620 PF06580 Histidine kinase DQQ01_RS04630 PF01547 Bacterial extracellular solute-binding protein DQQ01_RS04645 PF12833 Helix-turn-helix domain DQQ01_RS04645 PF00072 Response regulator receiver domain DQQ01_RS04650 PF03313 Serine dehydratase alpha chain DQQ01_RS04655 PF01546 Peptidase family M20/M25/M40 DQQ01_RS04660 PF00248 Aldo/keto reductase family DQQ01_RS04670 PF01473 Putative cell wall binding repeat DQQ01_RS04670 PF17890 Peptidoglycan hydrolase LytB WW-like domain DQQ01_RS04670 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain DQQ01_RS04670 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DQQ01_RS04675 PF00860 Permease family DQQ01_RS04685 PF00317 Ribonucleotide reductase, all-alpha domain DQQ01_RS04685 PF03477 ATP cone domain DQQ01_RS04685 PF02867 Ribonucleotide reductase, barrel domain DQQ01_RS04690 PF00268 Ribonucleotide reductase, small chain DQQ01_RS04700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DQQ01_RS04705 PF02397 Bacterial sugar transferase DQQ01_RS04715 PF00535 Glycosyl transferase family 2 DQQ01_RS04720 PF03275 UDP-galactopyranose mutase DQQ01_RS04730 PF00534 Glycosyl transferases group 1 DQQ01_RS04730 PF13439 Glycosyltransferase Family 4 DQQ01_RS04735 PF00535 Glycosyl transferase family 2 DQQ01_RS04740 PF00535 Glycosyl transferase family 2 DQQ01_RS04750 PF02397 Bacterial sugar transferase DQQ01_RS04770 PF00535 Glycosyl transferase family 2 DQQ01_RS04805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DQQ01_RS04805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DQQ01_RS04805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DQQ01_RS04810 PF00535 Glycosyl transferase family 2 DQQ01_RS04820 PF01501 Glycosyl transferase family 8 DQQ01_RS04820 PF00535 Glycosyl transferase family 2 DQQ01_RS04825 PF01943 Polysaccharide biosynthesis protein DQQ01_RS04825 PF14667 Polysaccharide biosynthesis C-terminal domain DQQ01_RS04835 PF00535 Glycosyl transferase family 2 DQQ01_RS04875 PF09586 Bacterial membrane protein YfhO DQQ01_RS04880 PF00535 Glycosyl transferase family 2 DQQ01_RS04915 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DQQ01_RS04920 PF14849 YidC periplasmic domain DQQ01_RS04920 PF02096 60Kd inner membrane protein DQQ01_RS04950 PF03466 LysR substrate binding domain DQQ01_RS04950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DQQ01_RS04955 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DQQ01_RS04955 PF00586 AIR synthase related protein, N-terminal domain DQQ01_RS04955 PF02769 AIR synthase related protein, C-terminal domain DQQ01_RS04965 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS04965 PF00072 Response regulator receiver domain DQQ01_RS04970 PF13426 PAS domain DQQ01_RS04970 PF00672 HAMP domain DQQ01_RS04970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS04970 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS04980 PF03733 Inner membrane component domain DQQ01_RS04985 PF01207 Dihydrouridine synthase (Dus) DQQ01_RS04990 PF02875 Mur ligase family, glutamate ligase domain DQQ01_RS04990 PF08245 Mur ligase middle domain DQQ01_RS04990 PF01225 Mur ligase family, catalytic domain DQQ01_RS04995 PF17764 3′ DNA-binding domain (3′BD) DQQ01_RS04995 PF18074 Primosomal protein N C-terminal domain DQQ01_RS04995 PF04851 Type III restriction enzyme, res subunit DQQ01_RS04995 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DQQ01_RS04995 PF00271 Helicase conserved C-terminal domain DQQ01_RS05000 PF01327 Polypeptide deformylase DQQ01_RS05005 PF02911 Formyl transferase, C-terminal domain DQQ01_RS05005 PF00551 Formyl transferase DQQ01_RS05010 PF01029 NusB family DQQ01_RS05010 PF01189 16S rRNA methyltransferase RsmB/F DQQ01_RS05015 PF04055 Radical SAM superfamily DQQ01_RS05025 PF00069 Protein kinase domain DQQ01_RS05025 PF03793 PASTA domain DQQ01_RS05030 PF03193 RsgA GTPase DQQ01_RS05030 PF16745 RsgA N-terminal domain DQQ01_RS05035 PF00834 Ribulose-phosphate 3 epimerase family DQQ01_RS05065 PF01381 Helix-turn-helix DQQ01_RS05070 PF00436 Single-strand binding protein family DQQ01_RS05080 PF17841 BID domain of Bartonella effector protein (Bep) DQQ01_RS05080 PF03389 MobA/MobL family DQQ01_RS05080 PF01443 Viral (Superfamily 1) RNA helicase DQQ01_RS05105 PF14659 Phage integrase, N-terminal SAM-like domain DQQ01_RS05105 PF00589 Phage integrase family DQQ01_RS05110 PF06071 Protein of unknown function (DUF933) DQQ01_RS05110 PF01926 50S ribosome-binding GTPase DQQ01_RS05120 PF02381 MraZ protein, putative antitoxin-like DQQ01_RS05125 PF01795 MraW methylase family DQQ01_RS05135 PF00905 Penicillin binding protein transpeptidase domain DQQ01_RS05135 PF03717 Penicillin-binding Protein dimerisation domain DQQ01_RS05135 PF03793 PASTA domain DQQ01_RS05140 PF00905 Penicillin binding protein transpeptidase domain DQQ01_RS05140 PF03717 Penicillin-binding Protein dimerisation domain DQQ01_RS05140 PF03793 PASTA domain DQQ01_RS05145 PF00953 Glycosyl transferase family 4 DQQ01_RS05145 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DQQ01_RS05150 PF02875 Mur ligase family, glutamate ligase domain DQQ01_RS05150 PF08245 Mur ligase middle domain DQQ01_RS05155 PF01098 Cell cycle protein DQQ01_RS05160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DQQ01_RS05165 PF03799 Cell division protein FtsQ DQQ01_RS05165 PF08478 POTRA domain, FtsQ-type DQQ01_RS05170 PF12327 FtsZ family, C-terminal domain DQQ01_RS05170 PF00091 Tubulin/FtsZ family, GTPase domain DQQ01_RS05175 PF08501 Shikimate dehydrogenase substrate binding domain DQQ01_RS05175 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DQQ01_RS05180 PF01487 Type I 3-dehydroquinase DQQ01_RS05190 PF04542 Sigma-70 region 2 DQQ01_RS05190 PF04545 Sigma-70, region 4 DQQ01_RS05195 PF00874 PRD domain DQQ01_RS05195 PF03123 CAT RNA binding domain DQQ01_RS05200 PF00381 PTS HPr component phosphorylation site DQQ01_RS05205 PF00391 PEP-utilising enzyme, mobile domain DQQ01_RS05205 PF05524 PEP-utilising enzyme, N-terminal DQQ01_RS05205 PF02896 PEP-utilising enzyme, TIM barrel domain DQQ01_RS05215 PF00367 phosphotransferase system, EIIB DQQ01_RS05215 PF02378 Phosphotransferase system, EIIC DQQ01_RS05215 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DQQ01_RS05220 PF00367 phosphotransferase system, EIIB DQQ01_RS05220 PF02378 Phosphotransferase system, EIIC DQQ01_RS05225 PF03932 CutC family DQQ01_RS05255 PF01614 Bacterial transcriptional regulator DQQ01_RS05255 PF09339 IclR helix-turn-helix domain DQQ01_RS05260 PF01081 KDPG and KHG aldolase DQQ01_RS05285 PF00596 Class II Aldolase and Adducin N-terminal domain DQQ01_RS05290 PF02535 ZIP Zinc transporter DQQ01_RS05295 PF02583 Metal-sensitive transcriptional repressor DQQ01_RS05305 PF02542 YgbB family DQQ01_RS05310 PF12848 ABC transporter DQQ01_RS05310 PF00005 ABC transporter DQQ01_RS05315 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DQQ01_RS05315 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DQQ01_RS05320 PF00072 Response regulator receiver domain DQQ01_RS05320 PF04397 LytTr DNA-binding domain DQQ01_RS05350 PF00132 Bacterial transferase hexapeptide (six repeats) DQQ01_RS05355 PF09190 DALR domain DQQ01_RS05355 PF01406 tRNA synthetases class I (C) catalytic domain DQQ01_RS05360 PF00636 Ribonuclease III domain DQQ01_RS05365 PF08032 RNA 2'-O ribose methyltransferase substrate binding DQQ01_RS05365 PF00588 SpoU rRNA Methylase family DQQ01_RS05370 PF04542 Sigma-70 region 2 DQQ01_RS05370 PF08281 Sigma-70, region 4 DQQ01_RS05390 PF13478 XdhC Rossmann domain DQQ01_RS05390 PF02625 XdhC and CoxI family DQQ01_RS05400 PF02664 S-Ribosylhomocysteinase (LuxS) DQQ01_RS05405 PF01209 ubiE/COQ5 methyltransferase family DQQ01_RS05410 PF00579 tRNA synthetases class I (W and Y) DQQ01_RS05415 PF03928 Haem-degrading DQQ01_RS05425 PF02687 FtsX-like permease family DQQ01_RS05425 PF00005 ABC transporter DQQ01_RS05425 PF12704 MacB-like periplasmic core domain DQQ01_RS05435 PF12704 MacB-like periplasmic core domain DQQ01_RS05435 PF02687 FtsX-like permease family DQQ01_RS05440 PF00849 RNA pseudouridylate synthase DQQ01_RS05445 PF13416 Bacterial extracellular solute-binding protein DQQ01_RS05455 PF00005 ABC transporter DQQ01_RS05455 PF08402 TOBE domain DQQ01_RS05460 PF10282 Lactonase, 7-bladed beta-propeller DQQ01_RS05475 PF00391 PEP-utilising enzyme, mobile domain DQQ01_RS05475 PF02887 Pyruvate kinase, alpha/beta domain DQQ01_RS05475 PF00224 Pyruvate kinase, barrel domain DQQ01_RS05480 PF02581 Thiamine monophosphate synthase DQQ01_RS05490 PF05690 Thiazole biosynthesis protein ThiG DQQ01_RS05495 PF00899 ThiF family DQQ01_RS05500 PF02597 ThiS family DQQ01_RS05500 PF05690 Thiazole biosynthesis protein ThiG DQQ01_RS05505 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DQQ01_RS05505 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DQQ01_RS05530 PF02503 Polyphosphate kinase middle domain DQQ01_RS05530 PF13089 Polyphosphate kinase N-terminal domain DQQ01_RS05530 PF13090 Polyphosphate kinase C-terminal domain 2 DQQ01_RS05530 PF17941 Polyphosphate kinase C-terminal domain 1 DQQ01_RS05535 PF02811 PHP domain DQQ01_RS05545 PF01569 PAP2 superfamily DQQ01_RS05550 PF00986 DNA gyrase B subunit, carboxyl terminus DQQ01_RS05550 PF01751 Toprim domain DQQ01_RS05550 PF00204 DNA gyrase B DQQ01_RS05550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS05555 PF03989 DNA gyrase C-terminal domain, beta-propeller DQQ01_RS05555 PF00521 DNA gyrase/topoisomerase IV, subunit A DQQ01_RS05565 PF17384 RimP C-terminal SH3 domain DQQ01_RS05565 PF02576 RimP N-terminal domain DQQ01_RS05570 PF08529 NusA N-terminal domain DQQ01_RS05570 PF00575 S1 RNA binding domain DQQ01_RS05570 PF13184 NusA-like KH domain DQQ01_RS05575 PF04296 Protein of unknown function (DUF448) DQQ01_RS05580 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DQQ01_RS05585 PF04760 Translation initiation factor IF-2, N-terminal region DQQ01_RS05585 PF00009 Elongation factor Tu GTP binding domain DQQ01_RS05585 PF11987 Translation-initiation factor 2 DQQ01_RS05590 PF02033 Ribosome-binding factor A DQQ01_RS05595 PF02272 DHHA1 domain DQQ01_RS05595 PF01368 DHH family DQQ01_RS05595 PF00571 CBS domain DQQ01_RS05595 PF01743 Poly A polymerase head domain DQQ01_RS05600 PF01509 TruB family pseudouridylate synthase (N terminal domain) DQQ01_RS05600 PF16198 tRNA pseudouridylate synthase B C-terminal domain DQQ01_RS05605 PF01687 Riboflavin kinase DQQ01_RS05605 PF06574 FAD synthetase DQQ01_RS05610 PF02690 Na+/Pi-cotransporter DQQ01_RS05630 PF04203 Sortase domain DQQ01_RS05645 PF00312 Ribosomal protein S15 DQQ01_RS05650 PF00575 S1 RNA binding domain DQQ01_RS05650 PF03725 3' exoribonuclease family, domain 2 DQQ01_RS05650 PF01138 3' exoribonuclease family, domain 1 DQQ01_RS05650 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DQQ01_RS05650 PF00013 KH domain DQQ01_RS05665 PF00692 dUTPase DQQ01_RS05670 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DQQ01_RS05670 PF12241 Trans-2-enoyl-CoA reductase catalytic region DQQ01_RS05670 PF07055 Enoyl reductase FAD binding domain DQQ01_RS05680 PF00005 ABC transporter DQQ01_RS05685 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS05685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS05690 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS05690 PF00072 Response regulator receiver domain DQQ01_RS05735 PF00106 short chain dehydrogenase DQQ01_RS05740 PF04060 Putative Fe-S cluster DQQ01_RS05765 PF00128 Alpha amylase, catalytic domain DQQ01_RS05765 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DQQ01_RS05780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DQQ01_RS05780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DQQ01_RS05790 PF01232 Mannitol dehydrogenase Rossmann domain DQQ01_RS05790 PF08125 Mannitol dehydrogenase C-terminal domain DQQ01_RS05800 PF00356 Bacterial regulatory proteins, lacI family DQQ01_RS05800 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DQQ01_RS05805 PF03480 Bacterial extracellular solute-binding protein, family 7 DQQ01_RS05815 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DQQ01_RS05825 PF00860 Permease family DQQ01_RS05835 PF02001 Protein of unknown function DUF134 DQQ01_RS05840 PF05067 Manganese containing catalase DQQ01_RS05860 PF00403 Heavy-metal-associated domain DQQ01_RS05865 PF04023 FeoA domain DQQ01_RS05865 PF17910 FeoB cytosolic helical domain DQQ01_RS05865 PF02421 Ferrous iron transport protein B DQQ01_RS05865 PF07664 Ferrous iron transport protein B C terminus DQQ01_RS05865 PF07670 Nucleoside recognition DQQ01_RS05870 PF02659 Putative manganese efflux pump DQQ01_RS05875 PF01022 Bacterial regulatory protein, arsR family DQQ01_RS05890 PF00550 Phosphopantetheine attachment site DQQ01_RS05895 PF00698 Acyl transferase domain DQQ01_RS05905 PF02801 Beta-ketoacyl synthase, C-terminal domain DQQ01_RS05905 PF00109 Beta-ketoacyl synthase, N-terminal domain DQQ01_RS05910 PF00364 Biotin-requiring enzyme DQQ01_RS05915 PF07977 FabA-like domain DQQ01_RS05925 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DQQ01_RS05930 PF03060 Nitronate monooxygenase DQQ01_RS05945 PF00749 tRNA synthetases class I (E and Q), catalytic domain DQQ01_RS05950 PF00580 UvrD/REP helicase N-terminal domain DQQ01_RS05950 PF13361 UvrD-like helicase C-terminal domain DQQ01_RS05980 PF06686 Stage III sporulation protein AC/AD protein family DQQ01_RS06005 PF03144 Elongation factor Tu domain 2 DQQ01_RS06005 PF00009 Elongation factor Tu GTP binding domain DQQ01_RS06005 PF16658 Class II release factor RF3, C-terminal domain DQQ01_RS06010 PF03780 Asp23 family, cell envelope-related function DQQ01_RS06015 PF01029 NusB family DQQ01_RS06020 PF02601 Exonuclease VII, large subunit DQQ01_RS06020 PF13742 OB-fold nucleic acid binding domain DQQ01_RS06025 PF02609 Exonuclease VII small subunit DQQ01_RS06030 PF00348 Polyprenyl synthetase DQQ01_RS06035 PF02780 Transketolase, C-terminal domain DQQ01_RS06035 PF02779 Transketolase, pyrimidine binding domain DQQ01_RS06035 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DQQ01_RS06040 PF01479 S4 domain DQQ01_RS06040 PF01728 FtsJ-like methyltransferase DQQ01_RS06045 PF01513 ATP-NAD kinase DQQ01_RS06050 PF01316 Arginine repressor, DNA binding domain DQQ01_RS06050 PF02863 Arginine repressor, C-terminal domain DQQ01_RS06055 PF13476 AAA domain DQQ01_RS06060 PF17820 PDZ domain DQQ01_RS06060 PF05580 SpoIVB peptidase S55 DQQ01_RS06065 PF08769 Sporulation initiation factor Spo0A C terminal DQQ01_RS06065 PF00072 Response regulator receiver domain DQQ01_RS06100 PF13350 Tyrosine phosphatase family DQQ01_RS06115 PF03352 Methyladenine glycosylase DQQ01_RS06115 PF00117 Glutamine amidotransferase class-I DQQ01_RS06115 PF00958 GMP synthase C terminal domain DQQ01_RS06115 PF13302 Acetyltransferase (GNAT) domain DQQ01_RS06115 PF13673 Acetyltransferase (GNAT) domain DQQ01_RS06125 PF00154 recA bacterial DNA recombination protein DQQ01_RS06130 PF02631 RecX family DQQ01_RS06135 PF00013 KH domain DQQ01_RS06135 PF12072 Domain of unknown function (DUF3552) DQQ01_RS06135 PF01966 HD domain DQQ01_RS06145 PF00589 Phage integrase family DQQ01_RS06145 PF02899 Phage integrase, N-terminal SAM-like domain DQQ01_RS06150 PF00793 DAHP synthetase I family DQQ01_RS06160 PF02082 Transcriptional regulator DQQ01_RS06165 PF00266 Aminotransferase class-V DQQ01_RS06170 PF01592 NifU-like N terminal domain DQQ01_RS06185 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DQQ01_RS06185 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DQQ01_RS06190 PF00162 Phosphoglycerate kinase DQQ01_RS06195 PF00121 Triosephosphate isomerase DQQ01_RS06225 PF00497 Bacterial extracellular solute-binding proteins, family 3 DQQ01_RS06230 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS06235 PF00005 ABC transporter DQQ01_RS06240 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DQQ01_RS06240 PF01676 Metalloenzyme superfamily DQQ01_RS06250 PF00113 Enolase, C-terminal TIM barrel domain DQQ01_RS06250 PF03952 Enolase, N-terminal domain DQQ01_RS06255 PF03840 Preprotein translocase SecG subunit DQQ01_RS06265 PF01668 SmpB protein DQQ01_RS06275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DQQ01_RS06280 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS06285 PF12911 N-terminal TM domain of oligopeptide transport permease C DQQ01_RS06285 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS06290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DQQ01_RS06290 PF00005 ABC transporter DQQ01_RS06295 PF00005 ABC transporter DQQ01_RS06295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DQQ01_RS06305 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS06305 PF00072 Response regulator receiver domain DQQ01_RS06310 PF00672 HAMP domain DQQ01_RS06310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS06310 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS06310 PF18698 Histidine kinase sensor domain DQQ01_RS06310 PF00989 PAS fold DQQ01_RS06315 PF03167 Uracil DNA glycosylase superfamily DQQ01_RS06325 PF01869 BadF/BadG/BcrA/BcrD ATPase family DQQ01_RS06330 PF01702 Queuine tRNA-ribosyltransferase DQQ01_RS06340 PF03315 Serine dehydratase beta chain DQQ01_RS06340 PF01842 ACT domain DQQ01_RS06345 PF03313 Serine dehydratase alpha chain DQQ01_RS06350 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DQQ01_RS06350 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DQQ01_RS06355 PF00180 Isocitrate/isopropylmalate dehydrogenase DQQ01_RS06360 PF00920 Dehydratase family DQQ01_RS06365 PF00205 Thiamine pyrophosphate enzyme, central domain DQQ01_RS06365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DQQ01_RS06365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DQQ01_RS06370 PF00266 Aminotransferase class-V DQQ01_RS06375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DQQ01_RS06375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DQQ01_RS06390 PF03459 TOBE domain DQQ01_RS06390 PF00005 ABC transporter DQQ01_RS06395 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DQQ01_RS06395 PF00037 4Fe-4S binding domain DQQ01_RS06395 PF02256 Iron hydrogenase small subunit DQQ01_RS06395 PF02906 Iron only hydrogenase large subunit, C-terminal domain DQQ01_RS06410 PF00128 Alpha amylase, catalytic domain DQQ01_RS06410 PF02806 Alpha amylase, C-terminal all-beta domain DQQ01_RS06410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DQQ01_RS06415 PF05552 Conserved TM helix DQQ01_RS06415 PF00924 Mechanosensitive ion channel DQQ01_RS06430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS06430 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS06435 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS06435 PF00072 Response regulator receiver domain DQQ01_RS06450 PF00005 ABC transporter DQQ01_RS06465 PF00318 Ribosomal protein S2 DQQ01_RS06470 PF00889 Elongation factor TS DQQ01_RS06515 PF00575 S1 RNA binding domain DQQ01_RS06515 PF10150 Ribonuclease E/G family DQQ01_RS06520 PF00293 NUDIX domain DQQ01_RS06530 PF00829 Ribosomal prokaryotic L21 protein DQQ01_RS06540 PF01016 Ribosomal L27 protein DQQ01_RS06545 PF01018 GTP1/OBG DQQ01_RS06545 PF01926 50S ribosome-binding GTPase DQQ01_RS06545 PF09269 Domain of unknown function (DUF1967) DQQ01_RS06550 PF01985 CRS1 / YhbY (CRM) domain DQQ01_RS06555 PF01467 Cytidylyltransferase-like DQQ01_RS06560 PF01966 HD domain DQQ01_RS06570 PF00717 Peptidase S24-like DQQ01_RS06570 PF01726 LexA DNA binding domain DQQ01_RS06580 PF00356 Bacterial regulatory proteins, lacI family DQQ01_RS06585 PF13685 Iron-containing alcohol dehydrogenase DQQ01_RS06595 PF00291 Pyridoxal-phosphate dependent enzyme DQQ01_RS06610 PF13493 Domain of unknown function (DUF4118) DQQ01_RS06610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS06610 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS06610 PF02702 Osmosensitive K+ channel His kinase sensor domain DQQ01_RS06615 PF13538 UvrD-like helicase C-terminal domain DQQ01_RS06635 PF00392 Bacterial regulatory proteins, gntR family DQQ01_RS06635 PF07702 UTRA domain DQQ01_RS06640 PF00005 ABC transporter DQQ01_RS06650 PF01758 Sodium Bile acid symporter family DQQ01_RS06655 PF00072 Response regulator receiver domain DQQ01_RS06655 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS06660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS06665 PF00005 ABC transporter DQQ01_RS06675 PF01047 MarR family DQQ01_RS06680 PF01554 MatE DQQ01_RS06685 PF02875 Mur ligase family, glutamate ligase domain DQQ01_RS06685 PF08245 Mur ligase middle domain DQQ01_RS06690 PF01227 GTP cyclohydrolase I DQQ01_RS06695 PF01966 HD domain DQQ01_RS06700 PF00809 Pterin binding enzyme DQQ01_RS06705 PF02152 Dihydroneopterin aldolase DQQ01_RS06705 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DQQ01_RS06710 PF00072 Response regulator receiver domain DQQ01_RS06710 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS06715 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS06715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS06720 PF07943 Penicillin-binding protein 5, C-terminal domain DQQ01_RS06720 PF00768 D-alanyl-D-alanine carboxypeptidase DQQ01_RS06725 PF00731 AIR carboxylase DQQ01_RS06730 PF01969 Protein of unknown function DUF111 DQQ01_RS06735 PF00271 Helicase conserved C-terminal domain DQQ01_RS06735 PF00270 DEAD/DEAH box helicase DQQ01_RS06740 PF00730 HhH-GPD superfamily base excision DNA repair protein DQQ01_RS06740 PF00633 Helix-hairpin-helix motif DQQ01_RS06745 PF00491 Arginase family DQQ01_RS06750 PF02625 XdhC and CoxI family DQQ01_RS06750 PF13478 XdhC Rossmann domain DQQ01_RS06760 PF00072 Response regulator receiver domain DQQ01_RS06760 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS06765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS06765 PF00672 HAMP domain DQQ01_RS06765 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS06765 PF18698 Histidine kinase sensor domain DQQ01_RS06770 PF00005 ABC transporter DQQ01_RS06770 PF12704 MacB-like periplasmic core domain DQQ01_RS06770 PF02687 FtsX-like permease family DQQ01_RS06780 PF00005 ABC transporter DQQ01_RS06780 PF02687 FtsX-like permease family DQQ01_RS06780 PF12704 MacB-like periplasmic core domain DQQ01_RS06790 PF00696 Amino acid kinase family DQQ01_RS06790 PF13840 ACT domain DQQ01_RS06800 PF00480 ROK family DQQ01_RS06800 PF01047 MarR family DQQ01_RS06805 PF00107 Zinc-binding dehydrogenase DQQ01_RS06805 PF08240 Alcohol dehydrogenase GroES-like domain DQQ01_RS06870 PF00072 Response regulator receiver domain DQQ01_RS06870 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS06875 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS06875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS06890 PF13732 Domain of unknown function (DUF4162) DQQ01_RS06890 PF00005 ABC transporter DQQ01_RS06910 PF00239 Resolvase, N terminal domain DQQ01_RS06910 PF02796 Helix-turn-helix domain of resolvase DQQ01_RS06920 PF12833 Helix-turn-helix domain DQQ01_RS06925 PF01547 Bacterial extracellular solute-binding protein DQQ01_RS06930 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS06935 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS06940 PF16875 Glycosyl hydrolase family 36 N-terminal domain DQQ01_RS06940 PF00485 Phosphoribulokinase / Uridine kinase family DQQ01_RS06940 PF16874 Glycosyl hydrolase family 36 C-terminal domain DQQ01_RS06975 PF09035 Excisionase from transposon Tn916 DQQ01_RS06980 PF00589 Phage integrase family DQQ01_RS06980 PF02920 DNA binding domain of tn916 integrase DQQ01_RS07030 PF18840 Large polyvalent protein associated domain 25 DQQ01_RS07045 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS07045 PF00072 Response regulator receiver domain DQQ01_RS07050 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS07050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS07050 PF00672 HAMP domain DQQ01_RS07100 PF01043 SecA preprotein cross-linking domain DQQ01_RS07100 PF07517 SecA DEAD-like domain DQQ01_RS07100 PF02810 SEC-C motif DQQ01_RS07100 PF07516 SecA Wing and Scaffold domain DQQ01_RS07130 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DQQ01_RS07145 PF00005 ABC transporter DQQ01_RS07155 PF00664 ABC transporter transmembrane region DQQ01_RS07155 PF03412 Peptidase C39 family DQQ01_RS07155 PF00005 ABC transporter DQQ01_RS07180 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DQQ01_RS07180 PF00703 Glycosyl hydrolases family 2 DQQ01_RS07180 PF02929 Beta galactosidase small chain DQQ01_RS07180 PF16353 Domain of unknown function(DUF4981) DQQ01_RS07180 PF02837 Glycosyl hydrolases family 2, sugar binding domain DQQ01_RS07195 PF13186 Iron-sulfur cluster-binding domain DQQ01_RS07195 PF04055 Radical SAM superfamily DQQ01_RS07220 PF00005 ABC transporter DQQ01_RS07225 PF00072 Response regulator receiver domain DQQ01_RS07225 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS07230 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS07230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS07230 PF00672 HAMP domain DQQ01_RS07235 PF12704 MacB-like periplasmic core domain DQQ01_RS07235 PF02687 FtsX-like permease family DQQ01_RS07240 PF00005 ABC transporter DQQ01_RS07340 PF01551 Peptidase family M23 DQQ01_RS07340 PF10145 Phage-related minor tail protein DQQ01_RS07340 PF01464 Transglycosylase SLT domain DQQ01_RS07405 PF00313 'Cold-shock' DNA-binding domain DQQ01_RS07455 PF04203 Sortase domain DQQ01_RS07470 PF15935 RNase LS, bacterial toxin DQQ01_RS07560 PF12538 DNA transporter DQQ01_RS07560 PF01580 FtsK/SpoIIIE family DQQ01_RS07565 PF01580 FtsK/SpoIIIE family DQQ01_RS07640 PF00664 ABC transporter transmembrane region DQQ01_RS07640 PF03412 Peptidase C39 family DQQ01_RS07640 PF00005 ABC transporter DQQ01_RS07645 PF14867 Lantibiotic alpha DQQ01_RS07650 PF14867 Lantibiotic alpha DQQ01_RS07655 PF14867 Lantibiotic alpha DQQ01_RS07660 PF02525 Flavodoxin-like fold DQQ01_RS07665 PF00005 ABC transporter DQQ01_RS07720 PF00072 Response regulator receiver domain DQQ01_RS07720 PF04397 LytTr DNA-binding domain DQQ01_RS07790 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DQQ01_RS07790 PF13538 UvrD-like helicase C-terminal domain DQQ01_RS07790 PF14490 Helix-hairpin-helix containing domain DQQ01_RS07800 PF02899 Phage integrase, N-terminal SAM-like domain DQQ01_RS07800 PF00589 Phage integrase family DQQ01_RS07810 PF01820 D-ala D-ala ligase N-terminus DQQ01_RS07810 PF07478 D-ala D-ala ligase C-terminus DQQ01_RS07900 PF04055 Radical SAM superfamily DQQ01_RS07900 PF06463 Molybdenum Cofactor Synthesis C DQQ01_RS07920 PF00005 ABC transporter DQQ01_RS07970 PF00712 DNA polymerase III beta subunit, N-terminal domain DQQ01_RS07970 PF02767 DNA polymerase III beta subunit, central domain DQQ01_RS07970 PF02768 DNA polymerase III beta subunit, C-terminal domain DQQ01_RS08005 PF00589 Phage integrase family DQQ01_RS08005 PF02920 DNA binding domain of tn916 integrase DQQ01_RS08015 PF13472 GDSL-like Lipase/Acylhydrolase family DQQ01_RS08015 PF07859 alpha/beta hydrolase fold DQQ01_RS08030 PF00085 Thioredoxin DQQ01_RS08035 PF07992 Pyridine nucleotide-disulphide oxidoreductase DQQ01_RS08040 PF00119 ATP synthase A chain DQQ01_RS08045 PF00137 ATP synthase subunit C DQQ01_RS08050 PF00430 ATP synthase B/B' CF(0) DQQ01_RS08055 PF00213 ATP synthase delta (OSCP) subunit DQQ01_RS08060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DQQ01_RS08060 PF02874 ATP synthase alpha/beta family, beta-barrel domain DQQ01_RS08060 PF00306 ATP synthase alpha/beta chain, C terminal domain DQQ01_RS08065 PF00231 ATP synthase DQQ01_RS08070 PF02874 ATP synthase alpha/beta family, beta-barrel domain DQQ01_RS08070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DQQ01_RS08075 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DQQ01_RS08075 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DQQ01_RS08080 PF10369 Small subunit of acetolactate synthase DQQ01_RS08085 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DQQ01_RS08085 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DQQ01_RS08090 PF03466 LysR substrate binding domain DQQ01_RS08090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DQQ01_RS08095 PF00330 Aconitase family (aconitate hydratase) DQQ01_RS08100 PF00694 Aconitase C-terminal domain DQQ01_RS08115 PF00005 ABC transporter DQQ01_RS08130 PF08502 LeuA allosteric (dimerisation) domain DQQ01_RS08130 PF00682 HMGL-like DQQ01_RS08140 PF14821 Threonine synthase N terminus DQQ01_RS08140 PF00291 Pyridoxal-phosphate dependent enzyme DQQ01_RS08155 PF01263 Aldose 1-epimerase DQQ01_RS08160 PF08486 Stage II sporulation protein DQQ01_RS08170 PF01409 tRNA synthetases class II core domain (F) DQQ01_RS08170 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DQQ01_RS08175 PF03483 B3/4 domain DQQ01_RS08175 PF03484 tRNA synthetase B5 domain DQQ01_RS08175 PF03147 Ferredoxin-fold anticodon binding domain DQQ01_RS08175 PF01588 Putative tRNA binding domain DQQ01_RS08175 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DQQ01_RS08180 PF00300 Histidine phosphatase superfamily (branch 1) DQQ01_RS08185 PF02547 Queuosine biosynthesis protein DQQ01_RS08215 PF04851 Type III restriction enzyme, res subunit DQQ01_RS08215 PF08774 VRR-NUC domain DQQ01_RS08230 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DQQ01_RS08235 PF02153 Prephenate dehydrogenase DQQ01_RS08240 PF14492 Elongation Factor G, domain II DQQ01_RS08240 PF03144 Elongation factor Tu domain 2 DQQ01_RS08240 PF00009 Elongation factor Tu GTP binding domain DQQ01_RS08240 PF00679 Elongation factor G C-terminus DQQ01_RS08240 PF03764 Elongation factor G, domain IV DQQ01_RS08245 PF02445 Quinolinate synthetase A protein DQQ01_RS08250 PF00890 FAD binding domain DQQ01_RS08255 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DQQ01_RS08255 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DQQ01_RS08260 PF08279 HTH domain DQQ01_RS08260 PF02829 3H domain DQQ01_RS08270 PF05525 Branched-chain amino acid transport protein DQQ01_RS08280 PF09334 tRNA synthetases class I (M) DQQ01_RS08280 PF13603 Leucyl-tRNA synthetase, Domain 2 DQQ01_RS08280 PF08264 Anticodon-binding domain of tRNA DQQ01_RS08280 PF00133 tRNA synthetases class I (I, L, M and V) DQQ01_RS08290 PF00145 C-5 cytosine-specific DNA methylase DQQ01_RS08315 PF02677 Epoxyqueuosine reductase QueH DQQ01_RS08320 PF00206 Lyase DQQ01_RS08320 PF14698 Argininosuccinate lyase C-terminal DQQ01_RS08325 PF02774 Semialdehyde dehydrogenase, dimerisation domain DQQ01_RS08325 PF01118 Semialdehyde dehydrogenase, NAD binding domain DQQ01_RS08330 PF01131 DNA topoisomerase DQQ01_RS08330 PF01751 Toprim domain DQQ01_RS08335 PF12804 MobA-like NTP transferase domain DQQ01_RS08335 PF14602 Hexapeptide repeat of succinyl-transferase DQQ01_RS08335 PF00132 Bacterial transferase hexapeptide (six repeats) DQQ01_RS08350 PF00534 Glycosyl transferases group 1 DQQ01_RS08350 PF13439 Glycosyltransferase Family 4 DQQ01_RS08355 PF00534 Glycosyl transferases group 1 DQQ01_RS08355 PF13439 Glycosyltransferase Family 4 DQQ01_RS08395 PF01783 Ribosomal L32p protein family DQQ01_RS08405 PF02504 Fatty acid synthesis protein DQQ01_RS08410 PF00550 Phosphopantetheine attachment site DQQ01_RS08415 PF14622 Ribonuclease-III-like DQQ01_RS08415 PF00035 Double-stranded RNA binding motif DQQ01_RS08420 PF02463 RecF/RecN/SMC N terminal domain DQQ01_RS08420 PF06470 SMC proteins Flexible Hinge Domain DQQ01_RS08425 PF02881 SRP54-type protein, helical bundle domain DQQ01_RS08425 PF00448 SRP54-type protein, GTPase domain DQQ01_RS08435 PF04015 Domain of unknown function (DUF362) DQQ01_RS08440 PF01969 Protein of unknown function DUF111 DQQ01_RS08455 PF01261 Xylose isomerase-like TIM barrel DQQ01_RS08460 PF13286 Phosphohydrolase-associated domain DQQ01_RS08460 PF01966 HD domain DQQ01_RS08465 PF01807 CHC2 zinc finger DQQ01_RS08465 PF08275 DNA primase catalytic core, N-terminal domain DQQ01_RS08465 PF10410 DnaB-helicase binding domain of primase DQQ01_RS08470 PF03979 Sigma-70 factor, region 1.1 DQQ01_RS08470 PF04539 Sigma-70 region 3 DQQ01_RS08470 PF04545 Sigma-70, region 4 DQQ01_RS08470 PF00140 Sigma-70 factor, region 1.2 DQQ01_RS08470 PF04542 Sigma-70 region 2 DQQ01_RS08475 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DQQ01_RS08480 PF01784 NIF3 (NGG1p interacting factor 3) DQQ01_RS08490 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS08490 PF00072 Response regulator receiver domain DQQ01_RS08495 PF00989 PAS fold DQQ01_RS08495 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS08495 PF18698 Histidine kinase sensor domain DQQ01_RS08495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS08495 PF00672 HAMP domain DQQ01_RS08500 PF03413 Peptidase propeptide and YPEB domain DQQ01_RS08505 PF02632 BioY family DQQ01_RS08520 PF01814 Hemerythrin HHE cation binding domain DQQ01_RS08525 PF03960 ArsC family DQQ01_RS08530 PF02581 Thiamine monophosphate synthase DQQ01_RS08535 PF08543 Phosphomethylpyrimidine kinase DQQ01_RS08535 PF02581 Thiamine monophosphate synthase DQQ01_RS08550 PF13419 Haloacid dehalogenase-like hydrolase DQQ01_RS08555 PF03883 Peroxide stress protein YaaA DQQ01_RS08580 PF00005 ABC transporter DQQ01_RS08595 PF00209 Sodium:neurotransmitter symporter family DQQ01_RS08600 PF00696 Amino acid kinase family DQQ01_RS08605 PF01765 Ribosome recycling factor DQQ01_RS08610 PF01255 Putative undecaprenyl diphosphate synthase DQQ01_RS08625 PF13180 PDZ domain DQQ01_RS08625 PF02163 Peptidase family M50 DQQ01_RS08630 PF04346 Ethanolamine utilisation protein, EutH DQQ01_RS08640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DQQ01_RS08640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DQQ01_RS08655 PF01979 Amidohydrolase family DQQ01_RS08665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DQQ01_RS08665 PF03129 Anticodon binding domain DQQ01_RS08665 PF02824 TGS domain DQQ01_RS08665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DQQ01_RS08680 PF01817 Chorismate mutase type II DQQ01_RS08680 PF00800 Prephenate dehydratase DQQ01_RS08690 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DQQ01_RS08690 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DQQ01_RS08695 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DQQ01_RS08695 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DQQ01_RS08700 PF13840 ACT domain DQQ01_RS08700 PF00696 Amino acid kinase family DQQ01_RS08710 PF00392 Bacterial regulatory proteins, gntR family DQQ01_RS08715 PF00005 ABC transporter DQQ01_RS08730 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DQQ01_RS08730 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DQQ01_RS08735 PF01048 Phosphorylase superfamily DQQ01_RS08740 PF01367 5'-3' exonuclease, C-terminal SAM fold DQQ01_RS08740 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DQQ01_RS08740 PF00476 DNA polymerase family A DQQ01_RS08745 PF01121 Dephospho-CoA kinase DQQ01_RS08750 PF00753 Metallo-beta-lactamase superfamily DQQ01_RS08760 PF05167 Uncharacterised ACR (DUF711) DQQ01_RS08770 PF02915 Rubrerythrin DQQ01_RS08780 PF00355 Rieske [2Fe-2S] domain DQQ01_RS08780 PF01266 FAD dependent oxidoreductase DQQ01_RS08785 PF13495 Phage integrase, N-terminal SAM-like domain DQQ01_RS08785 PF00589 Phage integrase family DQQ01_RS08790 PF02580 D-Tyr-tRNA(Tyr) deacylase DQQ01_RS08795 PF01594 AI-2E family transporter DQQ01_RS08800 PF01171 PP-loop family DQQ01_RS08810 PF04607 Region found in RelA / SpoT proteins DQQ01_RS08845 PF13180 PDZ domain DQQ01_RS08855 PF02311 AraC-like ligand binding domain DQQ01_RS08855 PF12833 Helix-turn-helix domain DQQ01_RS08860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS08860 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS08875 PF00291 Pyridoxal-phosphate dependent enzyme DQQ01_RS08880 PF00155 Aminotransferase class I and II DQQ01_RS08885 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DQQ01_RS08885 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DQQ01_RS08885 PF02142 MGS-like domain DQQ01_RS08890 PF00117 Glutamine amidotransferase class-I DQQ01_RS08890 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DQQ01_RS08895 PF00156 Phosphoribosyl transferase domain DQQ01_RS08900 PF01380 SIS domain DQQ01_RS08905 PF06418 CTP synthase N-terminus DQQ01_RS08905 PF00117 Glutamine amidotransferase class-I DQQ01_RS08910 PF13537 Glutamine amidotransferase domain DQQ01_RS08910 PF00733 Asparagine synthase DQQ01_RS08915 PF18318 Glutamine synthetase C-terminal domain DQQ01_RS08915 PF12437 Glutamine synthetase type III N terminal DQQ01_RS08915 PF00120 Glutamine synthetase, catalytic domain DQQ01_RS08920 PF00310 Glutamine amidotransferases class-II DQQ01_RS08935 PF00120 Glutamine synthetase, catalytic domain DQQ01_RS08935 PF03951 Glutamine synthetase, beta-Grasp domain DQQ01_RS08960 PF00072 Response regulator receiver domain DQQ01_RS08960 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS08965 PF00072 Response regulator receiver domain DQQ01_RS08965 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS08980 PF00849 RNA pseudouridylate synthase DQQ01_RS08980 PF01479 S4 domain DQQ01_RS08985 PF01252 Signal peptidase (SPase) II DQQ01_RS08990 PF01761 3-dehydroquinate synthase DQQ01_RS09000 PF04472 Cell division protein SepF DQQ01_RS09005 PF01168 Alanine racemase, N-terminal domain DQQ01_RS09015 PF04070 Domain of unknown function (DUF378) DQQ01_RS09030 PF02142 MGS-like domain DQQ01_RS09035 PF01098 Cell cycle protein DQQ01_RS09040 PF03776 Septum formation topological specificity factor MinE DQQ01_RS09045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DQQ01_RS09070 PF04002 RadC-like JAB domain DQQ01_RS09085 PF06838 Methionine gamma-lyase DQQ01_RS09095 PF08676 MutL C terminal dimerisation domain DQQ01_RS09095 PF01119 DNA mismatch repair protein, C-terminal domain DQQ01_RS09100 PF05188 MutS domain II DQQ01_RS09100 PF05192 MutS domain III DQQ01_RS09100 PF05190 MutS family domain IV DQQ01_RS09100 PF00488 MutS domain V DQQ01_RS09100 PF01624 MutS domain I DQQ01_RS09105 PF04055 Radical SAM superfamily DQQ01_RS09105 PF01938 TRAM domain DQQ01_RS09105 PF00919 Uncharacterized protein family UPF0004 DQQ01_RS09110 PF07739 TipAS antibiotic-recognition domain DQQ01_RS09110 PF13411 MerR HTH family regulatory protein DQQ01_RS09125 PF02867 Ribonucleotide reductase, barrel domain DQQ01_RS09125 PF00317 Ribonucleotide reductase, all-alpha domain DQQ01_RS09125 PF03477 ATP cone domain DQQ01_RS09130 PF08402 TOBE domain DQQ01_RS09130 PF00005 ABC transporter DQQ01_RS09150 PF00933 Glycosyl hydrolase family 3 N terminal domain DQQ01_RS09160 PF13443 Cro/C1-type HTH DNA-binding domain DQQ01_RS09180 PF04616 Glycosyl hydrolases family 43 DQQ01_RS09180 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DQQ01_RS09200 PF01812 5-formyltetrahydrofolate cyclo-ligase family DQQ01_RS09205 PF05979 Bacterial protein of unknown function (DUF896) DQQ01_RS09210 PF00696 Amino acid kinase family DQQ01_RS09210 PF01472 PUA domain DQQ01_RS09220 PF02130 Uncharacterized protein family UPF0054 DQQ01_RS09225 PF02562 PhoH-like protein DQQ01_RS09250 PF13175 AAA ATPase domain DQQ01_RS09255 PF13175 AAA ATPase domain DQQ01_RS09260 PF12320 Type 5 capsule protein repressor C-terminal domain DQQ01_RS09260 PF00149 Calcineurin-like phosphoesterase DQQ01_RS09275 PF01790 Prolipoprotein diacylglyceryl transferase DQQ01_RS09310 PF13538 UvrD-like helicase C-terminal domain DQQ01_RS09325 PF00248 Aldo/keto reductase family DQQ01_RS09340 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DQQ01_RS09345 PF01795 MraW methylase family DQQ01_RS09365 PF02590 Predicted SPOUT methyltransferase DQQ01_RS09395 PF17854 FtsK alpha domain DQQ01_RS09395 PF09397 Ftsk gamma domain DQQ01_RS09395 PF01580 FtsK/SpoIIIE family DQQ01_RS09400 PF02673 Bacitracin resistance protein BacA DQQ01_RS09405 PF00574 Clp protease DQQ01_RS09410 PF01709 Transcriptional regulator DQQ01_RS09415 PF03471 Transporter associated domain DQQ01_RS09415 PF00571 CBS domain DQQ01_RS09420 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DQQ01_RS09425 PF01168 Alanine racemase, N-terminal domain DQQ01_RS09425 PF00842 Alanine racemase, C-terminal domain DQQ01_RS09430 PF01256 Carbohydrate kinase DQQ01_RS09430 PF03853 YjeF-related protein N-terminus DQQ01_RS09435 PF06971 Putative DNA-binding protein N-terminus DQQ01_RS09435 PF02629 CoA binding domain DQQ01_RS09440 PF00005 ABC transporter DQQ01_RS09440 PF16326 ABC transporter C-terminal domain DQQ01_RS09440 PF12848 ABC transporter DQQ01_RS09445 PF00180 Isocitrate/isopropylmalate dehydrogenase DQQ01_RS09450 PF07729 FCD domain DQQ01_RS09450 PF00392 Bacterial regulatory proteins, gntR family DQQ01_RS09455 PF00682 HMGL-like DQQ01_RS09460 PF00082 Subtilase family DQQ01_RS09470 PF02687 FtsX-like permease family DQQ01_RS09470 PF12704 MacB-like periplasmic core domain DQQ01_RS09470 PF00005 ABC transporter DQQ01_RS09475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS09475 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS09475 PF00989 PAS fold DQQ01_RS09475 PF16736 Single Cache-like DQQ01_RS09480 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS09480 PF00072 Response regulator receiver domain DQQ01_RS09485 PF06280 Fn3-like domain DQQ01_RS09485 PF02225 PA domain DQQ01_RS09485 PF00082 Subtilase family DQQ01_RS09495 PF05190 MutS family domain IV DQQ01_RS09495 PF05192 MutS domain III DQQ01_RS09495 PF05188 MutS domain II DQQ01_RS09495 PF01624 MutS domain I DQQ01_RS09495 PF00488 MutS domain V DQQ01_RS09500 PF00202 Aminotransferase class-III DQQ01_RS09505 PF00490 Delta-aminolevulinic acid dehydratase DQQ01_RS09510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DQQ01_RS09510 PF02602 Uroporphyrinogen-III synthase HemD DQQ01_RS09515 PF03900 Porphobilinogen deaminase, C-terminal domain DQQ01_RS09515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DQQ01_RS09520 PF01488 Shikimate / quinate 5-dehydrogenase DQQ01_RS09520 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DQQ01_RS09525 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DQQ01_RS09525 PF01488 Shikimate / quinate 5-dehydrogenase DQQ01_RS09525 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DQQ01_RS09545 PF00005 ABC transporter DQQ01_RS09550 PF13419 Haloacid dehalogenase-like hydrolase DQQ01_RS09560 PF02570 Precorrin-8X methylmutase DQQ01_RS09570 PF00155 Aminotransferase class I and II DQQ01_RS09575 PF03186 CobD/Cbib protein DQQ01_RS09585 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DQQ01_RS09590 PF02654 Cobalamin-5-phosphate synthase DQQ01_RS09600 PF02277 Phosphoribosyltransferase DQQ01_RS09615 PF05175 Methyltransferase small domain DQQ01_RS09620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DQQ01_RS09625 PF11760 Cobalamin synthesis G N-terminal DQQ01_RS09625 PF11761 Cobalamin biosynthesis central region DQQ01_RS09625 PF01890 Cobalamin synthesis G C-terminus DQQ01_RS09630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DQQ01_RS09635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DQQ01_RS09640 PF01888 CbiD DQQ01_RS09660 PF09547 Stage IV sporulation protein A (spore_IV_A) DQQ01_RS09675 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DQQ01_RS09675 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DQQ01_RS09680 PF04961 Formiminotransferase-cyclodeaminase DQQ01_RS09685 PF01268 Formate--tetrahydrofolate ligase DQQ01_RS09710 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit DQQ01_RS09710 PF04060 Putative Fe-S cluster DQQ01_RS09715 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit DQQ01_RS09720 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain DQQ01_RS09720 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit DQQ01_RS09725 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DQQ01_RS09735 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DQQ01_RS09740 PF02219 Methylenetetrahydrofolate reductase DQQ01_RS09755 PF00248 Aldo/keto reductase family DQQ01_RS09760 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DQQ01_RS09760 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DQQ01_RS09765 PF02660 Glycerol-3-phosphate acyltransferase DQQ01_RS09770 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DQQ01_RS09770 PF01926 50S ribosome-binding GTPase DQQ01_RS09790 PF02578 Multi-copper polyphenol oxidoreductase laccase DQQ01_RS09795 PF02021 Uncharacterised protein family UPF0102 DQQ01_RS09800 PF01351 Ribonuclease HII DQQ01_RS09805 PF01926 50S ribosome-binding GTPase DQQ01_RS09810 PF10502 Signal peptidase, peptidase S26 DQQ01_RS09815 PF01245 Ribosomal protein L19 DQQ01_RS09820 PF01746 tRNA (Guanine-1)-methyltransferase DQQ01_RS09825 PF01782 RimM N-terminal domain DQQ01_RS09825 PF05239 PRC-barrel domain DQQ01_RS09835 PF00886 Ribosomal protein S16 DQQ01_RS09840 PF02978 Signal peptide binding domain DQQ01_RS09840 PF00448 SRP54-type protein, GTPase domain DQQ01_RS09840 PF02881 SRP54-type protein, helical bundle domain DQQ01_RS09845 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DQQ01_RS09850 PF05636 HIGH Nucleotidyl Transferase DQQ01_RS09855 PF01098 Cell cycle protein DQQ01_RS09860 PF03551 Transcriptional regulator PadR-like family DQQ01_RS09875 PF03009 Glycerophosphoryl diester phosphodiesterase family DQQ01_RS09885 PF03949 Malic enzyme, NAD binding domain DQQ01_RS09885 PF00390 Malic enzyme, N-terminal domain DQQ01_RS09890 PF00056 lactate/malate dehydrogenase, NAD binding domain DQQ01_RS09890 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DQQ01_RS09900 PF03838 Recombination protein U DQQ01_RS09905 PF10502 Signal peptidase, peptidase S26 DQQ01_RS09910 PF00849 RNA pseudouridylate synthase DQQ01_RS09920 PF00106 short chain dehydrogenase DQQ01_RS09925 PF11842 Domain of unknown function (DUF3362) DQQ01_RS09925 PF04055 Radical SAM superfamily DQQ01_RS09925 PF08497 Radical SAM N-terminal DQQ01_RS09930 PF13419 Haloacid dehalogenase-like hydrolase DQQ01_RS09935 PF01479 S4 domain DQQ01_RS09935 PF00849 RNA pseudouridylate synthase DQQ01_RS09950 PF01551 Peptidase family M23 DQQ01_RS09955 PF07687 Peptidase dimerisation domain DQQ01_RS09955 PF01546 Peptidase family M20/M25/M40 DQQ01_RS09960 PF07670 Nucleoside recognition DQQ01_RS09970 PF01467 Cytidylyltransferase-like DQQ01_RS09980 PF02142 MGS-like domain DQQ01_RS09985 PF00269 Small, acid-soluble spore proteins, alpha/beta type DQQ01_RS10000 PF00270 DEAD/DEAH box helicase DQQ01_RS10000 PF00271 Helicase conserved C-terminal domain DQQ01_RS10000 PF17191 RecG wedge domain DQQ01_RS10005 PF13684 Dihydroxyacetone kinase family DQQ01_RS10005 PF02734 DAK2 domain DQQ01_RS10015 PF00830 Ribosomal L28 family DQQ01_RS10040 PF00293 NUDIX domain DQQ01_RS10045 PF00905 Penicillin binding protein transpeptidase domain DQQ01_RS10045 PF03717 Penicillin-binding Protein dimerisation domain DQQ01_RS10050 PF01098 Cell cycle protein DQQ01_RS10055 PF01136 Peptidase family U32 DQQ01_RS10055 PF16325 Peptidase family U32 C-terminal domain DQQ01_RS10065 PF05496 Holliday junction DNA helicase RuvB P-loop domain DQQ01_RS10065 PF05491 RuvB C-terminal winged helix domain DQQ01_RS10065 PF17864 RuvB AAA lid domain DQQ01_RS10070 PF07499 RuvA, C-terminal domain DQQ01_RS10070 PF01330 RuvA N terminal domain DQQ01_RS10085 PF04060 Putative Fe-S cluster DQQ01_RS10085 PF13187 4Fe-4S dicluster domain DQQ01_RS10085 PF00037 4Fe-4S binding domain DQQ01_RS10090 PF02508 Rnf-Nqr subunit, membrane protein DQQ01_RS10095 PF02508 Rnf-Nqr subunit, membrane protein DQQ01_RS10100 PF04205 FMN-binding domain DQQ01_RS10105 PF03116 NQR2, RnfD, RnfE family DQQ01_RS10110 PF13237 4Fe-4S dicluster domain DQQ01_RS10110 PF13375 RnfC Barrel sandwich hybrid domain DQQ01_RS10110 PF10531 SLBB domain DQQ01_RS10110 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DQQ01_RS10125 PF00575 S1 RNA binding domain DQQ01_RS10125 PF02401 LytB protein DQQ01_RS10130 PF02401 LytB protein DQQ01_RS10135 PF02224 Cytidylate kinase DQQ01_RS10145 PF01380 SIS domain DQQ01_RS10145 PF01418 Helix-turn-helix domain, rpiR family DQQ01_RS10150 PF02436 Conserved carboxylase domain DQQ01_RS10150 PF00682 HMGL-like DQQ01_RS10150 PF00364 Biotin-requiring enzyme DQQ01_RS10155 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DQQ01_RS10160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DQQ01_RS10160 PF00682 HMGL-like DQQ01_RS10160 PF02785 Biotin carboxylase C-terminal domain DQQ01_RS10160 PF02436 Conserved carboxylase domain DQQ01_RS10160 PF00364 Biotin-requiring enzyme DQQ01_RS10160 PF00289 Biotin carboxylase, N-terminal domain DQQ01_RS10170 PF01039 Carboxyl transferase domain DQQ01_RS10190 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DQQ01_RS10190 PF04324 BFD-like [2Fe-2S] binding domain DQQ01_RS10190 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DQQ01_RS10190 PF18267 Rubredoxin NAD+ reductase C-terminal domain DQQ01_RS10190 PF07992 Pyridine nucleotide-disulphide oxidoreductase DQQ01_RS10200 PF03063 Prismane/CO dehydrogenase family DQQ01_RS10230 PF07943 Penicillin-binding protein 5, C-terminal domain DQQ01_RS10230 PF00768 D-alanyl-D-alanine carboxypeptidase DQQ01_RS10235 PF04079 Segregation and condensation complex subunit ScpB DQQ01_RS10240 PF02616 Segregation and condensation protein ScpA DQQ01_RS10245 PF00149 Calcineurin-like phosphoesterase DQQ01_RS10250 PF01554 MatE DQQ01_RS10255 PF00768 D-alanyl-D-alanine carboxypeptidase DQQ01_RS10255 PF07943 Penicillin-binding protein 5, C-terminal domain DQQ01_RS10265 PF13091 PLD-like domain DQQ01_RS10270 PF01165 Ribosomal protein S21 DQQ01_RS10275 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DQQ01_RS10275 PF01411 tRNA synthetases class II (A) DQQ01_RS10275 PF02272 DHHA1 domain DQQ01_RS10280 PF00892 EamA-like transporter family DQQ01_RS10300 PF00994 Probable molybdopterin binding domain DQQ01_RS10300 PF02464 Competence-damaged protein DQQ01_RS10300 PF18146 Damage-inducible protein CinA KH domain DQQ01_RS10305 PF01066 CDP-alcohol phosphatidyltransferase DQQ01_RS10310 PF18693 TRAM domain DQQ01_RS10310 PF00919 Uncharacterized protein family UPF0004 DQQ01_RS10310 PF04055 Radical SAM superfamily DQQ01_RS10315 PF01192 RNA polymerase Rpb6 DQQ01_RS10320 PF00625 Guanylate kinase DQQ01_RS10325 PF04025 Domain of unknown function (DUF370) DQQ01_RS10330 PF08340 Domain of unknown function (DUF1732) DQQ01_RS10330 PF03755 YicC-like family, N-terminal region DQQ01_RS10335 PF05670 NFACT protein RNA binding domain DQQ01_RS10340 PF07853 Protein of unknown function (DUF1648) DQQ01_RS10340 PF13630 SdpI/YhfL protein family DQQ01_RS10345 PF01022 Bacterial regulatory protein, arsR family DQQ01_RS10350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DQQ01_RS10350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DQQ01_RS10370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DQQ01_RS10370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DQQ01_RS10375 PF03313 Serine dehydratase alpha chain DQQ01_RS10380 PF00005 ABC transporter DQQ01_RS10385 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS10395 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS10400 PF08402 TOBE domain DQQ01_RS10400 PF00005 ABC transporter DQQ01_RS10410 PF01380 SIS domain DQQ01_RS10410 PF01418 Helix-turn-helix domain, rpiR family DQQ01_RS10430 PF17934 Tetracyclin repressor-like, C-terminal domain DQQ01_RS10430 PF00440 Bacterial regulatory proteins, tetR family DQQ01_RS10435 PF01915 Glycosyl hydrolase family 3 C-terminal domain DQQ01_RS10435 PF00933 Glycosyl hydrolase family 3 N terminal domain DQQ01_RS10435 PF14310 Fibronectin type III-like domain DQQ01_RS10440 PF12833 Helix-turn-helix domain DQQ01_RS10450 PF04023 FeoA domain DQQ01_RS10450 PF07670 Nucleoside recognition DQQ01_RS10450 PF02421 Ferrous iron transport protein B DQQ01_RS10450 PF17910 FeoB cytosolic helical domain DQQ01_RS10450 PF07664 Ferrous iron transport protein B C terminus DQQ01_RS10470 PF03275 UDP-galactopyranose mutase DQQ01_RS10475 PF00535 Glycosyl transferase family 2 DQQ01_RS10525 PF00005 ABC transporter DQQ01_RS10530 PF01061 ABC-2 type transporter DQQ01_RS10540 PF00535 Glycosyl transferase family 2 DQQ01_RS10545 PF00534 Glycosyl transferases group 1 DQQ01_RS10545 PF13439 Glycosyltransferase Family 4 DQQ01_RS10550 PF03129 Anticodon binding domain DQQ01_RS10550 PF02824 TGS domain DQQ01_RS10550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DQQ01_RS10550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DQQ01_RS10555 PF01458 Uncharacterized protein family (UPF0051) DQQ01_RS10560 PF12857 TOBE-like domain DQQ01_RS10560 PF00005 ABC transporter DQQ01_RS10570 PF00920 Dehydratase family DQQ01_RS10580 PF00005 ABC transporter DQQ01_RS10580 PF12704 MacB-like periplasmic core domain DQQ01_RS10580 PF02687 FtsX-like permease family DQQ01_RS10585 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS10585 PF13426 PAS domain DQQ01_RS10585 PF00672 HAMP domain DQQ01_RS10585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS10590 PF00072 Response regulator receiver domain DQQ01_RS10590 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS10595 PF01293 Phosphoenolpyruvate carboxykinase DQQ01_RS10600 PF00750 tRNA synthetases class I (R) DQQ01_RS10600 PF05746 DALR anticodon binding domain DQQ01_RS10600 PF03485 Arginyl tRNA synthetase N terminal domain DQQ01_RS10605 PF02645 Uncharacterised protein, DegV family COG1307 DQQ01_RS10610 PF12704 MacB-like periplasmic core domain DQQ01_RS10610 PF02687 FtsX-like permease family DQQ01_RS10630 PF01336 OB-fold nucleic acid binding domain DQQ01_RS10630 PF00152 tRNA synthetases class II (D, K and N) DQQ01_RS10630 PF02938 GAD domain DQQ01_RS10640 PF00072 Response regulator receiver domain DQQ01_RS10645 PF04055 Radical SAM superfamily DQQ01_RS10650 PF00753 Metallo-beta-lactamase superfamily DQQ01_RS10655 PF04607 Region found in RelA / SpoT proteins DQQ01_RS10655 PF02824 TGS domain DQQ01_RS10655 PF13291 ACT domain DQQ01_RS10660 PF00156 Phosphoribosyl transferase domain DQQ01_RS10665 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DQQ01_RS10665 PF02272 DHHA1 domain DQQ01_RS10665 PF01368 DHH family DQQ01_RS10665 PF17768 RecJ OB domain DQQ01_RS10670 PF07549 SecD/SecF GG Motif DQQ01_RS10670 PF02355 Protein export membrane protein DQQ01_RS10675 PF04055 Radical SAM superfamily DQQ01_RS10705 PF00571 CBS domain DQQ01_RS10705 PF03471 Transporter associated domain DQQ01_RS10705 PF01595 Cyclin M transmembrane N-terminal domain DQQ01_RS10715 PF02901 Pyruvate formate lyase-like DQQ01_RS10715 PF01228 Glycine radical DQQ01_RS10720 PF02901 Pyruvate formate lyase-like DQQ01_RS10720 PF01228 Glycine radical DQQ01_RS10725 PF04055 Radical SAM superfamily DQQ01_RS10745 PF13537 Glutamine amidotransferase domain DQQ01_RS10745 PF00733 Asparagine synthase DQQ01_RS10750 PF02441 Flavoprotein DQQ01_RS10755 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DQQ01_RS10755 PF16924 Dipicolinate synthase subunit A N-terminal domain DQQ01_RS10770 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS10785 PF00072 Response regulator receiver domain DQQ01_RS10785 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS10790 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS10790 PF18698 Histidine kinase sensor domain DQQ01_RS10790 PF00672 HAMP domain DQQ01_RS10790 PF00989 PAS fold DQQ01_RS10790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS10800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DQQ01_RS10815 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DQQ01_RS10820 PF03435 Saccharopine dehydrogenase NADP binding domain DQQ01_RS10820 PF16653 Saccharopine dehydrogenase C-terminal domain DQQ01_RS10825 PF00491 Arginase family DQQ01_RS10830 PF17284 Spermidine synthase tetramerisation domain DQQ01_RS10835 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DQQ01_RS10835 PF01276 Orn/Lys/Arg decarboxylase, major domain DQQ01_RS10840 PF02675 S-adenosylmethionine decarboxylase DQQ01_RS10845 PF02645 Uncharacterised protein, DegV family COG1307 DQQ01_RS10855 PF00293 NUDIX domain DQQ01_RS10855 PF09297 NADH pyrophosphatase zinc ribbon domain DQQ01_RS10860 PF00183 Hsp90 protein DQQ01_RS10870 PF00171 Aldehyde dehydrogenase family DQQ01_RS10885 PF13419 Haloacid dehalogenase-like hydrolase DQQ01_RS10890 PF02545 Maf-like protein DQQ01_RS10915 PF00005 ABC transporter DQQ01_RS10925 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS10935 PF00155 Aminotransferase class I and II DQQ01_RS10935 PF00392 Bacterial regulatory proteins, gntR family DQQ01_RS10940 PF00749 tRNA synthetases class I (E and Q), catalytic domain DQQ01_RS10940 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DQQ01_RS10950 PF01416 tRNA pseudouridine synthase DQQ01_RS10955 PF00877 NlpC/P60 family DQQ01_RS10960 PF01235 Sodium:alanine symporter family DQQ01_RS10965 PF01554 MatE DQQ01_RS10970 PF01116 Fructose-bisphosphate aldolase class-II DQQ01_RS10985 PF13091 PLD-like domain DQQ01_RS10995 PF01555 DNA methylase DQQ01_RS11000 PF12848 ABC transporter DQQ01_RS11000 PF16326 ABC transporter C-terminal domain DQQ01_RS11000 PF00005 ABC transporter DQQ01_RS11005 PF01699 Sodium/calcium exchanger protein DQQ01_RS11015 PF02669 K+-transporting ATPase, c chain DQQ01_RS11035 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DQQ01_RS11035 PF01411 tRNA synthetases class II (A) DQQ01_RS11035 PF02272 DHHA1 domain DQQ01_RS11040 PF03447 Homoserine dehydrogenase, NAD binding domain DQQ01_RS11040 PF01842 ACT domain DQQ01_RS11040 PF00742 Homoserine dehydrogenase DQQ01_RS11065 PF01915 Glycosyl hydrolase family 3 C-terminal domain DQQ01_RS11065 PF00933 Glycosyl hydrolase family 3 N terminal domain DQQ01_RS11125 PF01809 Putative membrane protein insertion efficiency factor DQQ01_RS11160 PF05681 Fumarate hydratase (Fumerase) DQQ01_RS11175 PF06368 Methylaspartate mutase E chain (MutE) DQQ01_RS11180 PF13941 MutL protein DQQ01_RS11185 PF02310 B12 binding domain DQQ01_RS11190 PF04223 Citrate lyase, alpha subunit (CitF) DQQ01_RS11195 PF03328 HpcH/HpaI aldolase/citrate lyase family DQQ01_RS11200 PF06857 Malonate decarboxylase delta subunit (MdcD) DQQ01_RS11205 PF04961 Formiminotransferase-cyclodeaminase DQQ01_RS11210 PF07837 Formiminotransferase domain, N-terminal subdomain DQQ01_RS11210 PF02971 Formiminotransferase domain DQQ01_RS11215 PF01979 Amidohydrolase family DQQ01_RS11220 PF01175 Urocanase Rossmann-like domain DQQ01_RS11220 PF17392 Urocanase C-terminal domain DQQ01_RS11220 PF17391 Urocanase N-terminal domain DQQ01_RS11225 PF03606 C4-dicarboxylate anaerobic carrier DQQ01_RS11230 PF07687 Peptidase dimerisation domain DQQ01_RS11230 PF01546 Peptidase family M20/M25/M40 DQQ01_RS11240 PF04542 Sigma-70 region 2 DQQ01_RS11240 PF08281 Sigma-70, region 4 DQQ01_RS11255 PF08218 Citrate lyase ligase C-terminal domain DQQ01_RS11260 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DQQ01_RS11260 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DQQ01_RS11265 PF04286 Protein of unknown function (DUF445) DQQ01_RS11275 PF00226 DnaJ domain DQQ01_RS11275 PF01556 DnaJ C terminal domain DQQ01_RS11275 PF00684 DnaJ central domain DQQ01_RS11285 PF04607 Region found in RelA / SpoT proteins DQQ01_RS11305 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS11310 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS11320 PF12833 Helix-turn-helix domain DQQ01_RS11320 PF00072 Response regulator receiver domain DQQ01_RS11325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS11325 PF06580 Histidine kinase DQQ01_RS11325 PF00672 HAMP domain DQQ01_RS11325 PF02743 Cache domain DQQ01_RS11330 PF01547 Bacterial extracellular solute-binding protein DQQ01_RS11335 PF08239 Bacterial SH3 domain DQQ01_RS11335 PF01520 N-acetylmuramoyl-L-alanine amidase DQQ01_RS11340 PF02142 MGS-like domain DQQ01_RS11345 PF00781 Diacylglycerol kinase catalytic domain DQQ01_RS11350 PF03009 Glycerophosphoryl diester phosphodiesterase family DQQ01_RS11360 PF00535 Glycosyl transferase family 2 DQQ01_RS11365 PF00730 HhH-GPD superfamily base excision DNA repair protein DQQ01_RS11365 PF14815 NUDIX domain DQQ01_RS11370 PF03749 Sugar fermentation stimulation protein RE domain DQQ01_RS11370 PF17746 SfsA N-terminal OB domain DQQ01_RS11375 PF13344 Haloacid dehalogenase-like hydrolase DQQ01_RS11385 PF07992 Pyridine nucleotide-disulphide oxidoreductase DQQ01_RS11385 PF04324 BFD-like [2Fe-2S] binding domain DQQ01_RS11390 PF05690 Thiazole biosynthesis protein ThiG DQQ01_RS11390 PF01266 FAD dependent oxidoreductase DQQ01_RS11395 PF04309 Glycerol-3-phosphate responsive antiterminator DQQ01_RS11415 PF07532 Bacterial Ig-like domain (group 4) DQQ01_RS11430 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DQQ01_RS11435 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS11445 PF13416 Bacterial extracellular solute-binding protein DQQ01_RS11450 PF07944 Beta-L-arabinofuranosidase, GH127 DQQ01_RS11460 PF00356 Bacterial regulatory proteins, lacI family DQQ01_RS11485 PF07690 Major Facilitator Superfamily DQQ01_RS11490 PF18073 Rubredoxin metal binding domain DQQ01_RS11500 PF07724 AAA domain (Cdc48 subfamily) DQQ01_RS11500 PF10431 C-terminal, D2-small domain, of ClpB protein DQQ01_RS11500 PF00004 ATPase family associated with various cellular activities (AAA) DQQ01_RS11500 PF02861 Clp amino terminal domain, pathogenicity island component DQQ01_RS11500 PF17871 AAA lid domain DQQ01_RS11515 PF02843 Phosphoribosylglycinamide synthetase, C domain DQQ01_RS11515 PF02844 Phosphoribosylglycinamide synthetase, N domain DQQ01_RS11515 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DQQ01_RS11520 PF00551 Formyl transferase DQQ01_RS11525 PF00586 AIR synthase related protein, N-terminal domain DQQ01_RS11525 PF02769 AIR synthase related protein, C-terminal domain DQQ01_RS11530 PF00731 AIR carboxylase DQQ01_RS11555 PF00156 Phosphoribosyl transferase domain DQQ01_RS11565 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DQQ01_RS11570 PF01180 Dihydroorotate dehydrogenase DQQ01_RS11575 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DQQ01_RS11580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DQQ01_RS11585 PF01979 Amidohydrolase family DQQ01_RS11590 PF00313 'Cold-shock' DNA-binding domain DQQ01_RS11625 PF01416 tRNA pseudouridine synthase DQQ01_RS11630 PF02361 Cobalt transport protein DQQ01_RS11645 PF13419 Haloacid dehalogenase-like hydrolase DQQ01_RS11650 PF01926 50S ribosome-binding GTPase DQQ01_RS11655 PF02190 ATP-dependent protease La (LON) substrate-binding domain DQQ01_RS11655 PF05362 Lon protease (S16) C-terminal proteolytic domain DQQ01_RS11655 PF00004 ATPase family associated with various cellular activities (AAA) DQQ01_RS11660 PF06689 ClpX C4-type zinc finger DQQ01_RS11660 PF07724 AAA domain (Cdc48 subfamily) DQQ01_RS11660 PF10431 C-terminal, D2-small domain, of ClpB protein DQQ01_RS11665 PF00574 Clp protease DQQ01_RS11670 PF05697 Bacterial trigger factor protein (TF) DQQ01_RS11670 PF05698 Bacterial trigger factor protein (TF) C-terminus DQQ01_RS11670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DQQ01_RS11685 PF01479 S4 domain DQQ01_RS11685 PF00849 RNA pseudouridylate synthase DQQ01_RS11690 PF02810 SEC-C motif DQQ01_RS11690 PF00557 Metallopeptidase family M24 DQQ01_RS11715 PF01042 Endoribonuclease L-PSP DQQ01_RS11730 PF10609 NUBPL iron-transfer P-loop NTPase DQQ01_RS11735 PF02583 Metal-sensitive transcriptional repressor DQQ01_RS11745 PF00156 Phosphoribosyl transferase domain DQQ01_RS11765 PF00817 impB/mucB/samB family DQQ01_RS11765 PF11799 impB/mucB/samB family C-terminal domain DQQ01_RS11770 PF00266 Aminotransferase class-V DQQ01_RS11775 PF00586 AIR synthase related protein, N-terminal domain DQQ01_RS11775 PF02769 AIR synthase related protein, C-terminal domain DQQ01_RS11780 PF03372 Endonuclease/Exonuclease/phosphatase family DQQ01_RS11785 PF00156 Phosphoribosyl transferase domain DQQ01_RS11790 PF02565 Recombination protein O C terminal DQQ01_RS11790 PF11967 Recombination protein O N terminal DQQ01_RS11795 PF07650 KH domain DQQ01_RS11795 PF01926 50S ribosome-binding GTPase DQQ01_RS11800 PF08367 Peptidase M16C associated DQQ01_RS11800 PF05193 Peptidase M16 inactive domain DQQ01_RS11800 PF00675 Insulinase (Peptidase family M16) DQQ01_RS11810 PF03471 Transporter associated domain DQQ01_RS11810 PF01595 Cyclin M transmembrane N-terminal domain DQQ01_RS11810 PF00571 CBS domain DQQ01_RS11815 PF00478 IMP dehydrogenase / GMP reductase domain DQQ01_RS11815 PF00571 CBS domain DQQ01_RS11820 PF13419 Haloacid dehalogenase-like hydrolase DQQ01_RS11825 PF00266 Aminotransferase class-V DQQ01_RS11830 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS11835 PF08402 TOBE domain DQQ01_RS11835 PF00005 ABC transporter DQQ01_RS11840 PF00483 Nucleotidyl transferase DQQ01_RS11845 PF00483 Nucleotidyl transferase DQQ01_RS11865 PF00581 Rhodanese-like domain DQQ01_RS11890 PF00580 UvrD/REP helicase N-terminal domain DQQ01_RS11890 PF13361 UvrD-like helicase C-terminal domain DQQ01_RS11905 PF00854 POT family DQQ01_RS11910 PF01321 Creatinase/Prolidase N-terminal domain DQQ01_RS11910 PF00557 Metallopeptidase family M24 DQQ01_RS11925 PF00709 Adenylosuccinate synthetase DQQ01_RS11935 PF00206 Lyase DQQ01_RS11935 PF14698 Argininosuccinate lyase C-terminal DQQ01_RS11965 PF01259 SAICAR synthetase DQQ01_RS11970 PF02811 PHP domain DQQ01_RS11970 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DQQ01_RS11970 PF11490 DNA polymerase III polC-type N-terminus II DQQ01_RS11970 PF14579 Helix-hairpin-helix motif DQQ01_RS11970 PF00929 Exonuclease DQQ01_RS11970 PF07733 Bacterial DNA polymerase III alpha NTPase domain DQQ01_RS11975 PF04551 GcpE protein DQQ01_RS11980 PF05816 Toxic anion resistance protein (TelA) DQQ01_RS11990 PF01063 Amino-transferase class IV DQQ01_RS12010 PF00121 Triosephosphate isomerase DQQ01_RS12015 PF00365 Phosphofructokinase DQQ01_RS12025 PF00005 ABC transporter DQQ01_RS12030 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS12035 PF01116 Fructose-bisphosphate aldolase class-II DQQ01_RS12040 PF01979 Amidohydrolase family DQQ01_RS12045 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DQQ01_RS12060 PF00303 Thymidylate synthase DQQ01_RS12065 PF00209 Sodium:neurotransmitter symporter family DQQ01_RS12075 PF02237 Biotin protein ligase C terminal domain DQQ01_RS12075 PF08279 HTH domain DQQ01_RS12075 PF03099 Biotin/lipoate A/B protein ligase family DQQ01_RS12080 PF02653 Branched-chain amino acid transport system / permease component DQQ01_RS12085 PF02653 Branched-chain amino acid transport system / permease component DQQ01_RS12090 PF00005 ABC transporter DQQ01_RS12095 PF02608 ABC transporter substrate-binding protein PnrA-like DQQ01_RS12100 PF12146 Serine aminopeptidase, S33 DQQ01_RS12110 PF06153 Cyclic-di-AMP receptor DQQ01_RS12120 PF01546 Peptidase family M20/M25/M40 DQQ01_RS12125 PF00881 Nitroreductase family DQQ01_RS12130 PF00392 Bacterial regulatory proteins, gntR family DQQ01_RS12135 PF00005 ABC transporter DQQ01_RS12145 PF01471 Putative peptidoglycan binding domain DQQ01_RS12145 PF01510 N-acetylmuramoyl-L-alanine amidase DQQ01_RS12150 PF00571 CBS domain DQQ01_RS12150 PF00478 IMP dehydrogenase / GMP reductase domain DQQ01_RS12160 PF00118 TCP-1/cpn60 chaperonin family DQQ01_RS12165 PF00166 Chaperonin 10 Kd subunit DQQ01_RS12170 PF08222 CodY helix-turn-helix domain DQQ01_RS12170 PF06018 CodY GAF-like domain DQQ01_RS12175 PF01396 Topoisomerase DNA binding C4 zinc finger DQQ01_RS12175 PF01751 Toprim domain DQQ01_RS12175 PF01131 DNA topoisomerase DQQ01_RS12180 PF17782 DprA winged helix domain DQQ01_RS12180 PF02481 DNA recombination-mediator protein A DQQ01_RS12185 PF01078 Magnesium chelatase, subunit ChlI DQQ01_RS12185 PF13335 Magnesium chelatase, subunit ChlI C-terminal DQQ01_RS12190 PF04542 Sigma-70 region 2 DQQ01_RS12190 PF04545 Sigma-70, region 4 DQQ01_RS12195 PF01136 Peptidase family U32 DQQ01_RS12195 PF16325 Peptidase family U32 C-terminal domain DQQ01_RS12215 PF00753 Metallo-beta-lactamase superfamily DQQ01_RS12215 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DQQ01_RS12215 PF17770 Ribonuclease J C-terminal domain DQQ01_RS12225 PF03652 Holliday junction resolvase DQQ01_RS12230 PF06135 IreB regulatory phosphoprotein DQQ01_RS12235 PF04055 Radical SAM superfamily DQQ01_RS12235 PF00919 Uncharacterized protein family UPF0004 DQQ01_RS12235 PF01938 TRAM domain DQQ01_RS12245 PF02926 THUMP domain DQQ01_RS12245 PF02568 Thiamine biosynthesis protein (ThiI) DQQ01_RS12250 PF00266 Aminotransferase class-V DQQ01_RS12255 PF04452 RNA methyltransferase DQQ01_RS12270 PF01556 DnaJ C terminal domain DQQ01_RS12270 PF00226 DnaJ domain DQQ01_RS12270 PF00684 DnaJ central domain DQQ01_RS12275 PF00012 Hsp70 protein DQQ01_RS12280 PF01025 GrpE DQQ01_RS12285 PF01628 HrcA protein C terminal domain DQQ01_RS12290 PF04851 Type III restriction enzyme, res subunit DQQ01_RS12290 PF17757 UvrB interaction domain DQQ01_RS12290 PF12344 Ultra-violet resistance protein B DQQ01_RS12290 PF02151 UvrB/uvrC motif DQQ01_RS12290 PF00271 Helicase conserved C-terminal domain DQQ01_RS12315 PF01043 SecA preprotein cross-linking domain DQQ01_RS12315 PF07517 SecA DEAD-like domain DQQ01_RS12315 PF02810 SEC-C motif DQQ01_RS12315 PF07516 SecA Wing and Scaffold domain DQQ01_RS12320 PF00246 Zinc carboxypeptidase DQQ01_RS12330 PF00703 Glycosyl hydrolases family 2 DQQ01_RS12330 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DQQ01_RS12330 PF02837 Glycosyl hydrolases family 2, sugar binding domain DQQ01_RS12330 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DQQ01_RS12330 PF16355 Domain of unknown function (DUF4982) DQQ01_RS12340 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DQQ01_RS12340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DQQ01_RS12345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DQQ01_RS12350 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS12370 PF00672 HAMP domain DQQ01_RS12370 PF06580 Histidine kinase DQQ01_RS12370 PF02743 Cache domain DQQ01_RS12370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS12375 PF12833 Helix-turn-helix domain DQQ01_RS12375 PF00072 Response regulator receiver domain DQQ01_RS12380 PF00005 ABC transporter DQQ01_RS12390 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS12390 PF12911 N-terminal TM domain of oligopeptide transport permease C DQQ01_RS12395 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS12400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DQQ01_RS12410 PF16338 Domain of unknown function (DUF4968) DQQ01_RS12410 PF17137 Domain of unknown function (DUF5110) DQQ01_RS12410 PF13802 Galactose mutarotase-like DQQ01_RS12410 PF01055 Glycosyl hydrolases family 31 DQQ01_RS12415 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DQQ01_RS12420 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DQQ01_RS12425 PF03480 Bacterial extracellular solute-binding protein, family 7 DQQ01_RS12435 PF12833 Helix-turn-helix domain DQQ01_RS12435 PF07883 Cupin domain DQQ01_RS12445 PF00005 ABC transporter DQQ01_RS12450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS12455 PF00072 Response regulator receiver domain DQQ01_RS12455 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS12465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DQQ01_RS12465 PF00005 ABC transporter DQQ01_RS12470 PF00005 ABC transporter DQQ01_RS12470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DQQ01_RS12475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DQQ01_RS12480 PF12911 N-terminal TM domain of oligopeptide transport permease C DQQ01_RS12480 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS12485 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS12490 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DQQ01_RS12500 PF10548 P22AR C-terminal domain DQQ01_RS12500 PF02498 BRO family, N-terminal domain DQQ01_RS12510 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DQQ01_RS12620 PF03592 Terminase small subunit DQQ01_RS12620 PF10668 Phage terminase small subunit DQQ01_RS12675 PF00436 Single-strand binding protein family DQQ01_RS12740 PF14659 Phage integrase, N-terminal SAM-like domain DQQ01_RS12740 PF00589 Phage integrase family DQQ01_RS12750 PF01371 Trp repressor protein DQQ01_RS12785 PF00186 Dihydrofolate reductase DQQ01_RS12795 PF01872 RibD C-terminal domain DQQ01_RS12810 PF02486 Replication initiation factor DQQ01_RS12810 PF18106 Rolling Circle replication initiation protein N-terminal domain DQQ01_RS12835 PF04463 Protein of unknown function (DUF523) DQQ01_RS12845 PF02486 Replication initiation factor DQQ01_RS12845 PF18106 Rolling Circle replication initiation protein N-terminal domain DQQ01_RS12895 PF01348 Type II intron maturase DQQ01_RS12895 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DQQ01_RS12910 PF00877 NlpC/P60 family DQQ01_RS12925 PF01638 HxlR-like helix-turn-helix DQQ01_RS12930 PF00881 Nitroreductase family DQQ01_RS12940 PF00005 ABC transporter DQQ01_RS12950 PF00072 Response regulator receiver domain DQQ01_RS12950 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS12955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS12980 PF09035 Excisionase from transposon Tn916 DQQ01_RS12985 PF00589 Phage integrase family DQQ01_RS12985 PF02920 DNA binding domain of tn916 integrase DQQ01_RS12990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DQQ01_RS12990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DQQ01_RS13000 PF00497 Bacterial extracellular solute-binding proteins, family 3 DQQ01_RS13010 PF02837 Glycosyl hydrolases family 2, sugar binding domain DQQ01_RS13010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DQQ01_RS13010 PF00703 Glycosyl hydrolases family 2 DQQ01_RS13015 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS13020 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS13030 PF12833 Helix-turn-helix domain DQQ01_RS13030 PF01497 Periplasmic binding protein DQQ01_RS13035 PF00072 Response regulator receiver domain DQQ01_RS13035 PF12833 Helix-turn-helix domain DQQ01_RS13040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS13040 PF06580 Histidine kinase DQQ01_RS13040 PF00672 HAMP domain DQQ01_RS13040 PF02743 Cache domain DQQ01_RS13050 PF04055 Radical SAM superfamily DQQ01_RS13050 PF16199 Radical_SAM C-terminal domain DQQ01_RS13060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DQQ01_RS13060 PF00005 ABC transporter DQQ01_RS13065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DQQ01_RS13065 PF00005 ABC transporter DQQ01_RS13070 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS13070 PF12911 N-terminal TM domain of oligopeptide transport permease C DQQ01_RS13075 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS13085 PF03477 ATP cone domain DQQ01_RS13090 PF00258 Flavodoxin DQQ01_RS13090 PF00753 Metallo-beta-lactamase superfamily DQQ01_RS13095 PF05343 M42 glutamyl aminopeptidase DQQ01_RS13120 PF02142 MGS-like domain DQQ01_RS13120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DQQ01_RS13120 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DQQ01_RS13125 PF00117 Glutamine amidotransferase class-I DQQ01_RS13125 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DQQ01_RS13135 PF07724 AAA domain (Cdc48 subfamily) DQQ01_RS13135 PF10431 C-terminal, D2-small domain, of ClpB protein DQQ01_RS13135 PF06689 ClpX C4-type zinc finger DQQ01_RS13140 PF13180 PDZ domain DQQ01_RS13155 PF02397 Bacterial sugar transferase DQQ01_RS13160 PF02719 Polysaccharide biosynthesis protein DQQ01_RS13165 PF00535 Glycosyl transferase family 2 DQQ01_RS13170 PF00535 Glycosyl transferase family 2 DQQ01_RS13175 PF00768 D-alanyl-D-alanine carboxypeptidase DQQ01_RS13175 PF07943 Penicillin-binding protein 5, C-terminal domain DQQ01_RS13195 PF01061 ABC-2 type transporter DQQ01_RS13200 PF00535 Glycosyl transferase family 2 DQQ01_RS13225 PF02457 DisA bacterial checkpoint controller nucleotide-binding DQQ01_RS13240 PF00156 Phosphoribosyl transferase domain DQQ01_RS13245 PF13538 UvrD-like helicase C-terminal domain DQQ01_RS13245 PF14490 Helix-hairpin-helix containing domain DQQ01_RS13245 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DQQ01_RS13255 PF17760 UvrA interaction domain DQQ01_RS13255 PF17755 UvrA DNA-binding domain DQQ01_RS13260 PF01380 SIS domain DQQ01_RS13260 PF00571 CBS domain DQQ01_RS13265 PF04055 Radical SAM superfamily DQQ01_RS13265 PF06969 HemN C-terminal domain DQQ01_RS13270 PF00679 Elongation factor G C-terminus DQQ01_RS13270 PF00009 Elongation factor Tu GTP binding domain DQQ01_RS13270 PF03144 Elongation factor Tu domain 2 DQQ01_RS13270 PF06421 GTP-binding protein LepA C-terminus DQQ01_RS13275 PF00884 Sulfatase DQQ01_RS13290 PF00535 Glycosyl transferase family 2 DQQ01_RS13295 PF00534 Glycosyl transferases group 1 DQQ01_RS13295 PF13439 Glycosyltransferase Family 4 DQQ01_RS13310 PF04991 LicD family DQQ01_RS13315 PF16363 GDP-mannose 4,6 dehydratase DQQ01_RS13320 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DQQ01_RS13330 PF03418 Germination protease DQQ01_RS13335 PF01649 Ribosomal protein S20 DQQ01_RS13345 PF13567 Domain of unknown function (DUF4131) DQQ01_RS13345 PF00753 Metallo-beta-lactamase superfamily DQQ01_RS13345 PF03772 Competence protein DQQ01_RS13365 PF10531 SLBB domain DQQ01_RS13375 PF00202 Aminotransferase class-III DQQ01_RS13380 PF00696 Amino acid kinase family DQQ01_RS13390 PF02774 Semialdehyde dehydrogenase, dimerisation domain DQQ01_RS13390 PF01118 Semialdehyde dehydrogenase, NAD binding domain DQQ01_RS13400 PF00764 Arginosuccinate synthase DQQ01_RS13420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DQQ01_RS13420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DQQ01_RS13420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DQQ01_RS13420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DQQ01_RS13430 PF03462 PCRF domain DQQ01_RS13430 PF00472 RF-1 domain DQQ01_RS13435 PF17827 PrmC N-terminal domain DQQ01_RS13435 PF13847 Methyltransferase domain DQQ01_RS13440 PF07136 Protein of unknown function (DUF1385) DQQ01_RS13445 PF01197 Ribosomal protein L31 DQQ01_RS13450 PF07498 Rho termination factor, N-terminal domain DQQ01_RS13450 PF07497 Rho termination factor, RNA-binding domain DQQ01_RS13450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DQQ01_RS13455 PF03466 LysR substrate binding domain DQQ01_RS13455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DQQ01_RS13465 PF02127 Aminopeptidase I zinc metalloprotease (M18) DQQ01_RS13470 PF13520 Amino acid permease DQQ01_RS13480 PF01799 [2Fe-2S] binding domain DQQ01_RS13480 PF00111 2Fe-2S iron-sulfur cluster binding domain DQQ01_RS13500 PF03590 Aspartate-ammonia ligase DQQ01_RS13550 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS13580 PF02645 Uncharacterised protein, DegV family COG1307 DQQ01_RS13600 PF00128 Alpha amylase, catalytic domain DQQ01_RS13600 PF02903 Alpha amylase, N-terminal ig-like domain DQQ01_RS13610 PF01434 Peptidase family M41 DQQ01_RS13610 PF06480 FtsH Extracellular DQQ01_RS13610 PF17862 AAA+ lid domain DQQ01_RS13610 PF00004 ATPase family associated with various cellular activities (AAA) DQQ01_RS13615 PF00156 Phosphoribosyl transferase domain DQQ01_RS13620 PF11734 TilS substrate C-terminal domain DQQ01_RS13620 PF01171 PP-loop family DQQ01_RS13640 PF07873 YabP family DQQ01_RS13645 PF01479 S4 domain DQQ01_RS13650 PF00216 Bacterial DNA-binding protein DQQ01_RS13655 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DQQ01_RS13655 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DQQ01_RS13655 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DQQ01_RS13655 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DQQ01_RS13665 PF12627 Probable RNA and SrmB- binding site of polymerase A DQQ01_RS13665 PF13735 tRNA nucleotidyltransferase domain 2 putative DQQ01_RS13665 PF01743 Poly A polymerase head domain DQQ01_RS13670 PF09180 Prolyl-tRNA synthetase, C-terminal DQQ01_RS13670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DQQ01_RS13670 PF03129 Anticodon binding domain DQQ01_RS13680 PF00005 ABC transporter DQQ01_RS13685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS13690 PF00072 Response regulator receiver domain DQQ01_RS13690 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS13720 PF07883 Cupin domain DQQ01_RS13730 PF00294 pfkB family carbohydrate kinase DQQ01_RS13745 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS13750 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS13755 PF00356 Bacterial regulatory proteins, lacI family DQQ01_RS13810 PF01725 Ham1 family DQQ01_RS13815 PF01170 Putative RNA methylase family UPF0020 DQQ01_RS13815 PF02926 THUMP domain DQQ01_RS13820 PF12850 Calcineurin-like phosphoesterase superfamily domain DQQ01_RS13825 PF00581 Rhodanese-like domain DQQ01_RS13825 PF12368 Rhodanase C-terminal DQQ01_RS13825 PF17773 UPF0176 acylphosphatase like domain DQQ01_RS13835 PF00155 Aminotransferase class I and II DQQ01_RS13840 PF00005 ABC transporter DQQ01_RS13840 PF00664 ABC transporter transmembrane region DQQ01_RS13865 PF02086 D12 class N6 adenine-specific DNA methyltransferase DQQ01_RS13870 PF02086 D12 class N6 adenine-specific DNA methyltransferase DQQ01_RS13900 PF07745 Glycosyl hydrolase family 53 DQQ01_RS13905 PF16355 Domain of unknown function (DUF4982) DQQ01_RS13905 PF00703 Glycosyl hydrolases family 2 DQQ01_RS13905 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DQQ01_RS13905 PF02837 Glycosyl hydrolases family 2, sugar binding domain DQQ01_RS13905 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DQQ01_RS13915 PF12833 Helix-turn-helix domain DQQ01_RS13915 PF02311 AraC-like ligand binding domain DQQ01_RS13945 PF02899 Phage integrase, N-terminal SAM-like domain DQQ01_RS13945 PF00589 Phage integrase family DQQ01_RS13965 PF12848 ABC transporter DQQ01_RS13965 PF00005 ABC transporter DQQ01_RS13975 PF01076 Plasmid recombination enzyme DQQ01_RS13990 PF00589 Phage integrase family DQQ01_RS13990 PF14659 Phage integrase, N-terminal SAM-like domain DQQ01_RS14010 PF01545 Cation efflux family DQQ01_RS14010 PF16916 Dimerisation domain of Zinc Transporter DQQ01_RS14030 PF09335 SNARE associated Golgi protein DQQ01_RS14035 PF02310 B12 binding domain DQQ01_RS14035 PF02607 B12 binding domain DQQ01_RS14035 PF02965 Vitamin B12 dependent methionine synthase, activation domain DQQ01_RS14035 PF00809 Pterin binding enzyme DQQ01_RS14035 PF02574 Homocysteine S-methyltransferase DQQ01_RS14040 PF14437 MafB19-like deaminase DQQ01_RS14065 PF17126 RsmF rRNA methyltransferase first C-terminal domain DQQ01_RS14065 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DQQ01_RS14065 PF01189 16S rRNA methyltransferase RsmB/F DQQ01_RS14070 PF04026 SpoVG DQQ01_RS14075 PF00483 Nucleotidyl transferase DQQ01_RS14075 PF00132 Bacterial transferase hexapeptide (six repeats) DQQ01_RS14080 PF00132 Bacterial transferase hexapeptide (six repeats) DQQ01_RS14080 PF00483 Nucleotidyl transferase DQQ01_RS14085 PF01225 Mur ligase family, catalytic domain DQQ01_RS14085 PF02875 Mur ligase family, glutamate ligase domain DQQ01_RS14085 PF08245 Mur ligase middle domain DQQ01_RS14100 PF14572 Phosphoribosyl synthetase-associated domain DQQ01_RS14100 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DQQ01_RS14110 PF13514 AAA domain DQQ01_RS14115 PF02463 RecF/RecN/SMC N terminal domain DQQ01_RS14125 PF00152 tRNA synthetases class II (D, K and N) DQQ01_RS14125 PF01336 OB-fold nucleic acid binding domain DQQ01_RS14205 PF06866 Protein of unknown function (DUF1256) DQQ01_RS14215 PF02779 Transketolase, pyrimidine binding domain DQQ01_RS14215 PF02780 Transketolase, C-terminal domain DQQ01_RS14220 PF00456 Transketolase, thiamine diphosphate binding domain DQQ01_RS14225 PF00923 Transaldolase/Fructose-6-phosphate aldolase DQQ01_RS14230 PF00356 Bacterial regulatory proteins, lacI family DQQ01_RS14235 PF02132 RecR protein DQQ01_RS14235 PF13662 Toprim domain DQQ01_RS14240 PF02575 YbaB/EbfC DNA-binding family DQQ01_RS14245 PF12169 DNA polymerase III subunits gamma and tau domain III DQQ01_RS14250 PF00365 Phosphofructokinase DQQ01_RS14260 PF00005 ABC transporter DQQ01_RS14270 PF06580 Histidine kinase DQQ01_RS14270 PF00672 HAMP domain DQQ01_RS14270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS14270 PF02743 Cache domain DQQ01_RS14275 PF04397 LytTr DNA-binding domain DQQ01_RS14275 PF00072 Response regulator receiver domain DQQ01_RS14285 PF03633 Glycosyl hydrolase family 65, C-terminal domain DQQ01_RS14285 PF03632 Glycosyl hydrolase family 65 central catalytic domain DQQ01_RS14285 PF03636 Glycosyl hydrolase family 65, N-terminal domain DQQ01_RS14295 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS14300 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS14330 PF01235 Sodium:alanine symporter family DQQ01_RS14335 PF00209 Sodium:neurotransmitter symporter family DQQ01_RS14340 PF03458 UPF0126 domain DQQ01_RS14365 PF02743 Cache domain DQQ01_RS14365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS14365 PF06580 Histidine kinase DQQ01_RS14365 PF00672 HAMP domain DQQ01_RS14370 PF00072 Response regulator receiver domain DQQ01_RS14375 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS14380 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS14400 PF08544 GHMP kinases C terminal DQQ01_RS14400 PF00288 GHMP kinases N terminal domain DQQ01_RS14400 PF10509 Galactokinase galactose-binding signature DQQ01_RS14405 PF12833 Helix-turn-helix domain DQQ01_RS14405 PF02311 AraC-like ligand binding domain DQQ01_RS14410 PF02390 Putative methyltransferase DQQ01_RS14425 PF01496 V-type ATPase 116kDa subunit family DQQ01_RS14445 PF02874 ATP synthase alpha/beta family, beta-barrel domain DQQ01_RS14445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DQQ01_RS14445 PF16886 ATPsynthase alpha/beta subunit N-term extension DQQ01_RS14450 PF02874 ATP synthase alpha/beta family, beta-barrel domain DQQ01_RS14450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DQQ01_RS14460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS14460 PF00512 His Kinase A (phospho-acceptor) domain DQQ01_RS14465 PF00072 Response regulator receiver domain DQQ01_RS14465 PF00486 Transcriptional regulatory protein, C terminal DQQ01_RS14470 PF01895 PhoU domain DQQ01_RS14475 PF00005 ABC transporter DQQ01_RS14485 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS14490 PF12849 PBP superfamily domain DQQ01_RS14495 PF10509 Galactokinase galactose-binding signature DQQ01_RS14495 PF00288 GHMP kinases N terminal domain DQQ01_RS14495 PF08544 GHMP kinases C terminal DQQ01_RS14510 PF01047 MarR family DQQ01_RS14515 PF06130 Phosphate propanoyltransferase DQQ01_RS14525 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DQQ01_RS14530 PF01502 Phosphoribosyl-AMP cyclohydrolase DQQ01_RS14530 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DQQ01_RS14545 PF00117 Glutamine amidotransferase class-I DQQ01_RS14550 PF00475 Imidazoleglycerol-phosphate dehydratase DQQ01_RS14555 PF00155 Aminotransferase class I and II DQQ01_RS14570 PF01634 ATP phosphoribosyltransferase DQQ01_RS14575 PF13393 Histidyl-tRNA synthetase DQQ01_RS14585 PF00570 HRDC domain DQQ01_RS14585 PF00271 Helicase conserved C-terminal domain DQQ01_RS14585 PF00270 DEAD/DEAH box helicase DQQ01_RS14585 PF16124 RecQ zinc-binding DQQ01_RS14585 PF09382 RQC domain DQQ01_RS14615 PF04962 KduI/IolB family DQQ01_RS14620 PF12833 Helix-turn-helix domain DQQ01_RS14655 PF13274 Protein of unknown function (DUF4065) DQQ01_RS14665 PF17841 BID domain of Bartonella effector protein (Bep) DQQ01_RS14665 PF03389 MobA/MobL family DQQ01_RS14665 PF01443 Viral (Superfamily 1) RNA helicase DQQ01_RS14675 PF00436 Single-strand binding protein family DQQ01_RS14690 PF09553 Eco47II restriction endonuclease DQQ01_RS14695 PF00145 C-5 cytosine-specific DNA methylase DQQ01_RS14695 PF01381 Helix-turn-helix DQQ01_RS14705 PF12116 Stage III sporulation protein D DQQ01_RS14740 PF12116 Stage III sporulation protein D DQQ01_RS14745 PF03717 Penicillin-binding Protein dimerisation domain DQQ01_RS14745 PF00905 Penicillin binding protein transpeptidase domain DQQ01_RS14745 PF05223 NTF2-like N-terminal transpeptidase domain DQQ01_RS14750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DQQ01_RS14750 PF05697 Bacterial trigger factor protein (TF) DQQ01_RS14750 PF05698 Bacterial trigger factor protein (TF) C-terminus DQQ01_RS14765 PF01177 Asp/Glu/Hydantoin racemase DQQ01_RS14770 PF09551 Stage II sporulation protein R (spore_II_R) DQQ01_RS14780 PF03323 Bacillus/Clostridium GerA spore germination protein DQQ01_RS14790 PF00392 Bacterial regulatory proteins, gntR family DQQ01_RS14790 PF07729 FCD domain DQQ01_RS14795 PF00288 GHMP kinases N terminal domain DQQ01_RS14795 PF08544 GHMP kinases C terminal DQQ01_RS14800 PF01979 Amidohydrolase family DQQ01_RS14800 PF13382 Adenine deaminase C-terminal domain DQQ01_RS14805 PF00860 Permease family DQQ01_RS14810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DQQ01_RS14810 PF03466 LysR substrate binding domain DQQ01_RS14820 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS14825 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS14830 PF13416 Bacterial extracellular solute-binding protein DQQ01_RS14835 PF06580 Histidine kinase DQQ01_RS14835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS14835 PF00672 HAMP domain DQQ01_RS14835 PF02743 Cache domain DQQ01_RS14840 PF12833 Helix-turn-helix domain DQQ01_RS14840 PF00072 Response regulator receiver domain DQQ01_RS14850 PF01594 AI-2E family transporter DQQ01_RS14855 PF00689 Cation transporting ATPase, C-terminus DQQ01_RS14855 PF00690 Cation transporter/ATPase, N-terminus DQQ01_RS14860 PF00248 Aldo/keto reductase family DQQ01_RS14870 PF01055 Glycosyl hydrolases family 31 DQQ01_RS14870 PF13802 Galactose mutarotase-like DQQ01_RS14875 PF14310 Fibronectin type III-like domain DQQ01_RS14875 PF01915 Glycosyl hydrolase family 3 C-terminal domain DQQ01_RS14875 PF00933 Glycosyl hydrolase family 3 N terminal domain DQQ01_RS14880 PF16874 Glycosyl hydrolase family 36 C-terminal domain DQQ01_RS14880 PF16875 Glycosyl hydrolase family 36 N-terminal domain DQQ01_RS14890 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS14900 PF00356 Bacterial regulatory proteins, lacI family DQQ01_RS14905 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DQQ01_RS14905 PF06165 Glycosyltransferase family 36 DQQ01_RS14910 PF00703 Glycosyl hydrolases family 2 DQQ01_RS14910 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain DQQ01_RS14910 PF02837 Glycosyl hydrolases family 2, sugar binding domain DQQ01_RS14920 PF01588 Putative tRNA binding domain DQQ01_RS14920 PF09334 tRNA synthetases class I (M) DQQ01_RS14930 PF01235 Sodium:alanine symporter family DQQ01_RS14935 PF01554 MatE DQQ01_RS14940 PF00005 ABC transporter DQQ01_RS14945 PF02653 Branched-chain amino acid transport system / permease component DQQ01_RS14955 PF07670 Nucleoside recognition DQQ01_RS14960 PF09587 Bacterial capsule synthesis protein PGA_cap DQQ01_RS14965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DQQ01_RS14970 PF05175 Methyltransferase small domain DQQ01_RS14975 PF04468 PSP1 C-terminal conserved region DQQ01_RS14980 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DQQ01_RS14980 PF12170 DNA polymerase III tau subunit V interacting with alpha DQQ01_RS14980 PF12169 DNA polymerase III subunits gamma and tau domain III DQQ01_RS14985 PF00625 Guanylate kinase DQQ01_RS14990 PF01276 Orn/Lys/Arg decarboxylase, major domain DQQ01_RS14990 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DQQ01_RS14995 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15000 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15010 PF02954 Bacterial regulatory protein, Fis family DQQ01_RS15010 PF00072 Response regulator receiver domain DQQ01_RS15010 PF00158 Sigma-54 interaction domain DQQ01_RS15015 PF06580 Histidine kinase DQQ01_RS15015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS15015 PF07694 5TMR of 5TMR-LYT DQQ01_RS15025 PF14310 Fibronectin type III-like domain DQQ01_RS15025 PF00933 Glycosyl hydrolase family 3 N terminal domain DQQ01_RS15025 PF01915 Glycosyl hydrolase family 3 C-terminal domain DQQ01_RS15030 PF12833 Helix-turn-helix domain DQQ01_RS15035 PF01212 Beta-eliminating lyase DQQ01_RS15040 PF01554 MatE DQQ01_RS15055 PF06445 GyrI-like small molecule binding domain DQQ01_RS15055 PF13411 MerR HTH family regulatory protein DQQ01_RS15060 PF02417 Chromate transporter DQQ01_RS15070 PF00343 Carbohydrate phosphorylase DQQ01_RS15075 PF00356 Bacterial regulatory proteins, lacI family DQQ01_RS15080 PF02446 4-alpha-glucanotransferase DQQ01_RS15085 PF04298 Putative neutral zinc metallopeptidase DQQ01_RS15095 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DQQ01_RS15110 PF03793 PASTA domain DQQ01_RS15110 PF00069 Protein kinase domain DQQ01_RS15120 PF02806 Alpha amylase, C-terminal all-beta domain DQQ01_RS15120 PF00128 Alpha amylase, catalytic domain DQQ01_RS15120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DQQ01_RS15125 PF00128 Alpha amylase, catalytic domain DQQ01_RS15125 PF02903 Alpha amylase, N-terminal ig-like domain DQQ01_RS15130 PF16859 Tetracyclin repressor-like, C-terminal domain DQQ01_RS15130 PF00440 Bacterial regulatory proteins, tetR family DQQ01_RS15135 PF01813 ATP synthase subunit D DQQ01_RS15150 PF01990 ATP synthase (F/14-kDa) subunit DQQ01_RS15165 PF00137 ATP synthase subunit C DQQ01_RS15170 PF01496 V-type ATPase 116kDa subunit family DQQ01_RS15190 PF01479 S4 domain DQQ01_RS15190 PF00849 RNA pseudouridylate synthase DQQ01_RS15200 PF00672 HAMP domain DQQ01_RS15200 PF02743 Cache domain DQQ01_RS15200 PF06580 Histidine kinase DQQ01_RS15200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS15205 PF12833 Helix-turn-helix domain DQQ01_RS15205 PF10114 Sensory domain found in PocR DQQ01_RS15210 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15215 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15240 PF01195 Peptidyl-tRNA hydrolase DQQ01_RS15250 PF02492 CobW/HypB/UreG, nucleotide-binding domain DQQ01_RS15250 PF07683 Cobalamin synthesis protein cobW C-terminal domain DQQ01_RS15255 PF01678 Diaminopimelate epimerase DQQ01_RS15260 PF12833 Helix-turn-helix domain DQQ01_RS15290 PF01055 Glycosyl hydrolases family 31 DQQ01_RS15290 PF13802 Galactose mutarotase-like DQQ01_RS15295 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15300 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS15310 PF06580 Histidine kinase DQQ01_RS15315 PF12833 Helix-turn-helix domain DQQ01_RS15315 PF00072 Response regulator receiver domain DQQ01_RS15335 PF00687 Ribosomal protein L1p/L10e family DQQ01_RS15340 PF03946 Ribosomal protein L11, N-terminal domain DQQ01_RS15340 PF00298 Ribosomal protein L11, RNA binding domain DQQ01_RS15345 PF00467 KOW motif DQQ01_RS15345 PF02357 Transcription termination factor nusG DQQ01_RS15355 PF00471 Ribosomal protein L33 DQQ01_RS15365 PF01381 Helix-turn-helix DQQ01_RS15370 PF00072 Response regulator receiver domain DQQ01_RS15370 PF08769 Sporulation initiation factor Spo0A C terminal DQQ01_RS15385 PF00962 Adenosine/AMP deaminase DQQ01_RS15395 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DQQ01_RS15405 PF04616 Glycosyl hydrolases family 43 DQQ01_RS15405 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain DQQ01_RS15410 PF01554 MatE DQQ01_RS15415 PF00884 Sulfatase DQQ01_RS15415 PF16347 Domain of unknown function (DUF4976) DQQ01_RS15420 PF00356 Bacterial regulatory proteins, lacI family DQQ01_RS15425 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DQQ01_RS15430 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15435 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15440 PF01547 Bacterial extracellular solute-binding protein DQQ01_RS15450 PF00343 Carbohydrate phosphorylase DQQ01_RS15455 PF00133 tRNA synthetases class I (I, L, M and V) DQQ01_RS15455 PF08264 Anticodon-binding domain of tRNA DQQ01_RS15460 PF00768 D-alanyl-D-alanine carboxypeptidase DQQ01_RS15460 PF07943 Penicillin-binding protein 5, C-terminal domain DQQ01_RS15465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DQQ01_RS15470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DQQ01_RS15470 PF03819 MazG nucleotide pyrophosphohydrolase domain DQQ01_RS15475 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DQQ01_RS15475 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DQQ01_RS15475 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DQQ01_RS15480 PF02557 D-alanyl-D-alanine carboxypeptidase DQQ01_RS15490 PF07470 Glycosyl Hydrolase Family 88 DQQ01_RS15515 PF00107 Zinc-binding dehydrogenase DQQ01_RS15515 PF08240 Alcohol dehydrogenase GroES-like domain DQQ01_RS15525 PF02743 Cache domain DQQ01_RS15525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS15525 PF06580 Histidine kinase DQQ01_RS15525 PF00672 HAMP domain DQQ01_RS15530 PF12833 Helix-turn-helix domain DQQ01_RS15535 PF15714 Stage V sporulation protein T C-terminal, transcription factor DQQ01_RS15535 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DQQ01_RS15545 PF01554 MatE DQQ01_RS15555 PF00482 Type II secretion system (T2SS), protein F DQQ01_RS15580 PF00437 Type II/IV secretion system protein DQQ01_RS15585 PF03707 Bacterial signalling protein N terminal repeat DQQ01_RS15585 PF00990 Diguanylate cyclase, GGDEF domain DQQ01_RS15585 PF00563 EAL domain DQQ01_RS15590 PF00990 Diguanylate cyclase, GGDEF domain DQQ01_RS15590 PF13426 PAS domain DQQ01_RS15590 PF00563 EAL domain DQQ01_RS15595 PF00990 Diguanylate cyclase, GGDEF domain DQQ01_RS15600 PF01636 Phosphotransferase enzyme family DQQ01_RS15610 PF00155 Aminotransferase class I and II DQQ01_RS15615 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15620 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15625 PF01547 Bacterial extracellular solute-binding protein DQQ01_RS15630 PF12833 Helix-turn-helix domain DQQ01_RS15630 PF00072 Response regulator receiver domain DQQ01_RS15635 PF00672 HAMP domain DQQ01_RS15635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DQQ01_RS15635 PF06580 Histidine kinase DQQ01_RS15635 PF02743 Cache domain DQQ01_RS15645 PF00920 Dehydratase family DQQ01_RS15650 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain DQQ01_RS15650 PF08531 Alpha-L-rhamnosidase N-terminal domain DQQ01_RS15650 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain DQQ01_RS15650 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain DQQ01_RS15655 PF01488 Shikimate / quinate 5-dehydrogenase DQQ01_RS15655 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DQQ01_RS15655 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DQQ01_RS15660 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DQQ01_RS15660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DQQ01_RS15665 PF02311 AraC-like ligand binding domain DQQ01_RS15665 PF12833 Helix-turn-helix domain DQQ01_RS15670 PF16875 Glycosyl hydrolase family 36 N-terminal domain DQQ01_RS15670 PF16874 Glycosyl hydrolase family 36 C-terminal domain DQQ01_RS15675 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15680 PF00528 Binding-protein-dependent transport system inner membrane component DQQ01_RS15685 PF01547 Bacterial extracellular solute-binding protein DQQ01_RS15695 PF00392 Bacterial regulatory proteins, gntR family DQQ01_RS15695 PF07729 FCD domain DQQ01_RS15700 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DQQ01_RS15705 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DQQ01_RS15705 PF07992 Pyridine nucleotide-disulphide oxidoreductase DQQ01_RS15715 PF02492 CobW/HypB/UreG, nucleotide-binding domain DQQ01_RS15740 PF12833 Helix-turn-helix domain DQQ01_RS15740 PF02311 AraC-like ligand binding domain DQQ01_RS15750 PF00485 Phosphoribulokinase / Uridine kinase family DQQ01_RS15750 PF16875 Glycosyl hydrolase family 36 N-terminal domain DQQ01_RS15750 PF16874 Glycosyl hydrolase family 36 C-terminal domain DQQ01_RS15760 PF12833 Helix-turn-helix domain DQQ01_RS15760 PF02311 AraC-like ligand binding domain DQQ01_RS15765 PF03006 Haemolysin-III related DQQ01_RS15770 PF01475 Ferric uptake regulator family DQQ01_RS15775 PF02915 Rubrerythrin DQQ01_RS15920 PF05257 CHAP domain DQQ01_RS15920 PF01476 LysM domain