locus-tag class description NQ550_RS00005 PF00308 Bacterial dnaA protein NQ550_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix NQ550_RS00005 PF11638 DnaA N-terminal domain NQ550_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NQ550_RS00010 PF02767 DNA polymerase III beta subunit, central domain NQ550_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NQ550_RS00020 PF02463 RecF/RecN/SMC N terminal domain NQ550_RS00030 PF00398 Ribosomal RNA adenine dimethylase NQ550_RS00040 PF04607 Region found in RelA / SpoT proteins NQ550_RS00045 PF00575 S1 RNA binding domain NQ550_RS00050 PF07085 DRTGG domain NQ550_RS00050 PF02833 DHHA2 domain NQ550_RS00050 PF01368 DHH family NQ550_RS00050 PF00571 CBS domain NQ550_RS00060 PF01202 Shikimate kinase NQ550_RS00065 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NQ550_RS00070 PF02773 S-adenosylmethionine synthetase, C-terminal domain NQ550_RS00070 PF02772 S-adenosylmethionine synthetase, central domain NQ550_RS00070 PF00438 S-adenosylmethionine synthetase, N-terminal domain NQ550_RS00075 PF16736 Single Cache-like NQ550_RS00075 PF00989 PAS fold NQ550_RS00075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS00075 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS00080 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS00080 PF00072 Response regulator receiver domain NQ550_RS00085 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NQ550_RS00085 PF01276 Orn/Lys/Arg decarboxylase, major domain NQ550_RS00090 PF00625 Guanylate kinase NQ550_RS00095 PF12169 DNA polymerase III subunits gamma and tau domain III NQ550_RS00100 PF04468 PSP1 C-terminal conserved region NQ550_RS00105 PF05175 Methyltransferase small domain NQ550_RS00110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NQ550_RS00115 PF00204 DNA gyrase B NQ550_RS00115 PF00986 DNA gyrase B subunit, carboxyl terminus NQ550_RS00115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS00115 PF01751 Toprim domain NQ550_RS00120 PF03989 DNA gyrase C-terminal domain, beta-propeller NQ550_RS00120 PF00521 DNA gyrase/topoisomerase IV, subunit A NQ550_RS00215 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS00215 PF13407 Periplasmic binding protein domain NQ550_RS00220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQ550_RS00220 PF00367 phosphotransferase system, EIIB NQ550_RS00220 PF02378 Phosphotransferase system, EIIC NQ550_RS00225 PF08244 Glycosyl hydrolases family 32 C terminal NQ550_RS00225 PF00251 Glycosyl hydrolases family 32 N-terminal domain NQ550_RS00230 PF01541 GIY-YIG catalytic domain NQ550_RS00245 PF03006 Haemolysin-III related NQ550_RS00260 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS00270 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS00275 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS00290 PF01385 Probable transposase NQ550_RS00290 PF07282 Putative transposase DNA-binding domain NQ550_RS00290 PF12323 Helix-turn-helix domain NQ550_RS00295 PF02449 Beta-galactosidase NQ550_RS00295 PF08533 Beta-galactosidase C-terminal domain NQ550_RS00295 PF08532 Beta-galactosidase trimerisation domain NQ550_RS00300 PF00271 Helicase conserved C-terminal domain NQ550_RS00300 PF04434 SWIM zinc finger NQ550_RS00300 PF00176 SNF2 family N-terminal domain NQ550_RS00305 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NQ550_RS00305 PF15714 Stage V sporulation protein T C-terminal, transcription factor NQ550_RS00310 PF00149 Calcineurin-like phosphoesterase NQ550_RS00310 PF12320 Type 5 capsule protein repressor C-terminal domain NQ550_RS00315 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain NQ550_RS00315 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NQ550_RS00315 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NQ550_RS00365 PF00072 Response regulator receiver domain NQ550_RS00365 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS00370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS00370 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS00380 PF00596 Class II Aldolase and Adducin N-terminal domain NQ550_RS00385 PF00596 Class II Aldolase and Adducin N-terminal domain NQ550_RS00395 PF00331 Glycosyl hydrolase family 10 NQ550_RS00395 PF07859 alpha/beta hydrolase fold NQ550_RS00400 PF13509 S1 domain NQ550_RS00400 PF17783 CvfB-like winged helix domain NQ550_RS00405 PF14579 Helix-hairpin-helix motif NQ550_RS00405 PF02811 PHP domain NQ550_RS00405 PF07733 Bacterial DNA polymerase III alpha NTPase domain NQ550_RS00405 PF01336 OB-fold nucleic acid binding domain NQ550_RS00405 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NQ550_RS00410 PF00365 Phosphofructokinase NQ550_RS00415 PF02386 Cation transport protein NQ550_RS00420 PF02080 TrkA-C domain NQ550_RS00420 PF02254 TrkA-N domain NQ550_RS00425 PF00588 SpoU rRNA Methylase family NQ550_RS00425 PF08032 RNA 2'-O ribose methyltransferase substrate binding NQ550_RS00440 PF01145 SPFH domain / Band 7 family NQ550_RS00445 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NQ550_RS00445 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NQ550_RS00450 PF08279 HTH domain NQ550_RS00450 PF03099 Biotin/lipoate A/B protein ligase family NQ550_RS00450 PF02237 Biotin protein ligase C terminal domain NQ550_RS00460 PF01207 Dihydrouridine synthase (Dus) NQ550_RS00465 PF03449 Transcription elongation factor, N-terminal NQ550_RS00465 PF01272 Transcription elongation factor, GreA/GreB, C-term NQ550_RS00470 PF01336 OB-fold nucleic acid binding domain NQ550_RS00470 PF00152 tRNA synthetases class II (D, K and N) NQ550_RS00475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NQ550_RS00480 PF00005 ABC transporter NQ550_RS00480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NQ550_RS00485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NQ550_RS00485 PF00005 ABC transporter NQ550_RS00490 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS00495 PF12911 N-terminal TM domain of oligopeptide transport permease C NQ550_RS00495 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS00500 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NQ550_RS00500 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NQ550_RS00500 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NQ550_RS00500 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NQ550_RS00520 PF00768 D-alanyl-D-alanine carboxypeptidase NQ550_RS00520 PF07943 Penicillin-binding protein 5, C-terminal domain NQ550_RS00525 PF00133 tRNA synthetases class I (I, L, M and V) NQ550_RS00525 PF08264 Anticodon-binding domain of tRNA NQ550_RS00530 PF00343 Carbohydrate phosphorylase NQ550_RS00565 PF01348 Type II intron maturase NQ550_RS00565 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ550_RS00570 PF01520 N-acetylmuramoyl-L-alanine amidase NQ550_RS00575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NQ550_RS00615 PF00270 DEAD/DEAH box helicase NQ550_RS00615 PF13749 Putative ATP-dependent DNA helicase recG C-terminal NQ550_RS00615 PF17191 RecG wedge domain NQ550_RS00635 PF00239 Resolvase, N terminal domain NQ550_RS00635 PF02796 Helix-turn-helix domain of resolvase NQ550_RS00650 PF08239 Bacterial SH3 domain NQ550_RS00650 PF00877 NlpC/P60 family NQ550_RS00650 PF01476 LysM domain NQ550_RS00655 PF08544 GHMP kinases C terminal NQ550_RS00655 PF00288 GHMP kinases N terminal domain NQ550_RS00660 PF07729 FCD domain NQ550_RS00660 PF00392 Bacterial regulatory proteins, gntR family NQ550_RS00665 PF03323 Bacillus/Clostridium GerA spore germination protein NQ550_RS00680 PF01177 Asp/Glu/Hydantoin racemase NQ550_RS00705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NQ550_RS00705 PF05698 Bacterial trigger factor protein (TF) C-terminus NQ550_RS00705 PF05697 Bacterial trigger factor protein (TF) NQ550_RS00710 PF01522 Polysaccharide deacetylase NQ550_RS00715 PF02806 Alpha amylase, C-terminal all-beta domain NQ550_RS00715 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NQ550_RS00715 PF00128 Alpha amylase, catalytic domain NQ550_RS00725 PF07683 Cobalamin synthesis protein cobW C-terminal domain NQ550_RS00725 PF02492 CobW/HypB/UreG, nucleotide-binding domain NQ550_RS00735 PF01195 Peptidyl-tRNA hydrolase NQ550_RS00740 PF02559 CarD-like/TRCF domain NQ550_RS00740 PF00270 DEAD/DEAH box helicase NQ550_RS00740 PF00271 Helicase conserved C-terminal domain NQ550_RS00740 PF03461 TRCF domain NQ550_RS00740 PF17757 UvrB interaction domain NQ550_RS00750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NQ550_RS00765 PF00708 Acylphosphatase NQ550_RS00805 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS00810 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS00810 PF12911 N-terminal TM domain of oligopeptide transport permease C NQ550_RS00815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NQ550_RS00820 PF00005 ABC transporter NQ550_RS00820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NQ550_RS00825 PF00005 ABC transporter NQ550_RS00825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NQ550_RS00835 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NQ550_RS00850 PF00465 Iron-containing alcohol dehydrogenase NQ550_RS00855 PF04607 Region found in RelA / SpoT proteins NQ550_RS00860 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS00860 PF17152 Periplasmic sensor domain NQ550_RS00865 PF03707 Bacterial signalling protein N terminal repeat NQ550_RS00865 PF00563 EAL domain NQ550_RS00865 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS00870 PF00375 Sodium:dicarboxylate symporter family NQ550_RS00890 PF05569 BlaR1 peptidase M56 NQ550_RS00890 PF00905 Penicillin binding protein transpeptidase domain NQ550_RS00895 PF00072 Response regulator receiver domain NQ550_RS00895 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS00915 PF08275 DNA primase catalytic core, N-terminal domain NQ550_RS00915 PF10410 DnaB-helicase binding domain of primase NQ550_RS00915 PF01807 CHC2 zinc finger NQ550_RS00915 PF08278 DNA primase DnaG DnaB-binding NQ550_RS00970 PF00756 Putative esterase NQ550_RS00975 PF01547 Bacterial extracellular solute-binding protein NQ550_RS00980 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS00985 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS00995 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS01000 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NQ550_RS01005 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NQ550_RS01015 PF07944 Beta-L-arabinofuranosidase, GH127 NQ550_RS01025 PF04616 Glycosyl hydrolases family 43 NQ550_RS01025 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain NQ550_RS01030 PF04616 Glycosyl hydrolases family 43 NQ550_RS01030 PF16369 C-terminal lipocalin-like domain NQ550_RS01040 PF13416 Bacterial extracellular solute-binding protein NQ550_RS01045 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS01050 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS01055 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NQ550_RS01060 PF01380 SIS domain NQ550_RS01060 PF01418 Helix-turn-helix domain, rpiR family NQ550_RS01065 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NQ550_RS01070 PF01979 Amidohydrolase family NQ550_RS01075 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase NQ550_RS01080 PF01380 SIS domain NQ550_RS01080 PF01418 Helix-turn-helix domain, rpiR family NQ550_RS01085 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS01090 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS01095 PF01547 Bacterial extracellular solute-binding protein NQ550_RS01100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NQ550_RS01100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NQ550_RS01105 PF00701 Dihydrodipicolinate synthetase family NQ550_RS01110 PF00480 ROK family NQ550_RS01120 PF07859 alpha/beta hydrolase fold NQ550_RS01135 PF05690 Thiazole biosynthesis protein ThiG NQ550_RS01145 PF02581 Thiamine monophosphate synthase NQ550_RS01150 PF01964 Radical SAM ThiC family NQ550_RS01155 PF08220 DeoR-like helix-turn-helix domain NQ550_RS01155 PF00455 DeoR C terminal sensor domain NQ550_RS01160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NQ550_RS01160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NQ550_RS01165 PF00456 Transketolase, thiamine diphosphate binding domain NQ550_RS01170 PF02779 Transketolase, pyrimidine binding domain NQ550_RS01170 PF02780 Transketolase, C-terminal domain NQ550_RS01175 PF00107 Zinc-binding dehydrogenase NQ550_RS01175 PF08240 Alcohol dehydrogenase GroES-like domain NQ550_RS01185 PF00005 ABC transporter NQ550_RS01190 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS01215 PF00633 Helix-hairpin-helix motif NQ550_RS01215 PF00730 HhH-GPD superfamily base excision DNA repair protein NQ550_RS01225 PF00343 Carbohydrate phosphorylase NQ550_RS01230 PF02311 AraC-like ligand binding domain NQ550_RS01230 PF12833 Helix-turn-helix domain NQ550_RS01275 PF01863 Protein of unknown function DUF45 NQ550_RS01305 PF03788 LrgA family NQ550_RS01310 PF04172 LrgB-like family NQ550_RS01320 PF02237 Biotin protein ligase C terminal domain NQ550_RS01320 PF03099 Biotin/lipoate A/B protein ligase family NQ550_RS01320 PF08279 HTH domain NQ550_RS01335 PF04542 Sigma-70 region 2 NQ550_RS01335 PF08281 Sigma-70, region 4 NQ550_RS01340 PF02272 DHHA1 domain NQ550_RS01340 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NQ550_RS01340 PF01411 tRNA synthetases class II (A) NQ550_RS01345 PF01979 Amidohydrolase family NQ550_RS01375 PF00119 ATP synthase A chain NQ550_RS01380 PF00137 ATP synthase subunit C NQ550_RS01385 PF00430 ATP synthase B/B' CF(0) NQ550_RS01390 PF00213 ATP synthase delta (OSCP) subunit NQ550_RS01395 PF02874 ATP synthase alpha/beta family, beta-barrel domain NQ550_RS01395 PF00306 ATP synthase alpha/beta chain, C terminal domain NQ550_RS01395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ550_RS01400 PF00231 ATP synthase NQ550_RS01405 PF02874 ATP synthase alpha/beta family, beta-barrel domain NQ550_RS01405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ550_RS01410 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NQ550_RS01410 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NQ550_RS01420 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family NQ550_RS01435 PF00437 Type II/IV secretion system protein NQ550_RS01480 PF01694 Rhomboid family NQ550_RS01485 PF13426 PAS domain NQ550_RS01485 PF14827 Double sensory domain of two-component sensor kinase NQ550_RS01485 PF00672 HAMP domain NQ550_RS01485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS01485 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS01490 PF01230 HIT domain NQ550_RS01500 PF04101 Glycosyltransferase family 28 C-terminal domain NQ550_RS01500 PF03033 Glycosyltransferase family 28 N-terminal domain NQ550_RS01510 PF12706 Beta-lactamase superfamily domain NQ550_RS01520 PF01048 Phosphorylase superfamily NQ550_RS01540 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NQ550_RS01540 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NQ550_RS01550 PF01336 OB-fold nucleic acid binding domain NQ550_RS01550 PF00152 tRNA synthetases class II (D, K and N) NQ550_RS01565 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NQ550_RS01565 PF14572 Phosphoribosyl synthetase-associated domain NQ550_RS01570 PF11638 DnaA N-terminal domain NQ550_RS01570 PF00308 Bacterial dnaA protein NQ550_RS01570 PF08299 Bacterial dnaA protein helix-turn-helix NQ550_RS01580 PF08245 Mur ligase middle domain NQ550_RS01580 PF02875 Mur ligase family, glutamate ligase domain NQ550_RS01580 PF01225 Mur ligase family, catalytic domain NQ550_RS01585 PF00483 Nucleotidyl transferase NQ550_RS01585 PF00132 Bacterial transferase hexapeptide (six repeats) NQ550_RS01590 PF00132 Bacterial transferase hexapeptide (six repeats) NQ550_RS01590 PF00483 Nucleotidyl transferase NQ550_RS01595 PF04026 SpoVG NQ550_RS01605 PF06463 Molybdenum Cofactor Synthesis C NQ550_RS01605 PF04055 Radical SAM superfamily NQ550_RS01620 PF14437 MafB19-like deaminase NQ550_RS01625 PF01554 MatE NQ550_RS01635 PF00365 Phosphofructokinase NQ550_RS01640 PF12169 DNA polymerase III subunits gamma and tau domain III NQ550_RS01645 PF02575 YbaB/EbfC DNA-binding family NQ550_RS01650 PF13662 Toprim domain NQ550_RS01650 PF02132 RecR protein NQ550_RS01655 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS01660 PF00923 Transaldolase/Fructose-6-phosphate aldolase NQ550_RS01665 PF00456 Transketolase, thiamine diphosphate binding domain NQ550_RS01665 PF02779 Transketolase, pyrimidine binding domain NQ550_RS01665 PF02780 Transketolase, C-terminal domain NQ550_RS01670 PF02779 Transketolase, pyrimidine binding domain NQ550_RS01670 PF02780 Transketolase, C-terminal domain NQ550_RS01675 PF06866 Protein of unknown function (DUF1256) NQ550_RS01825 PF02371 Transposase IS116/IS110/IS902 family NQ550_RS01825 PF01548 Transposase NQ550_RS01865 PF02127 Aminopeptidase I zinc metalloprotease (M18) NQ550_RS01870 PF12704 MacB-like periplasmic core domain NQ550_RS01870 PF02687 FtsX-like permease family NQ550_RS01870 PF00005 ABC transporter NQ550_RS01880 PF12704 MacB-like periplasmic core domain NQ550_RS01880 PF02687 FtsX-like permease family NQ550_RS01895 PF00005 ABC transporter NQ550_RS01900 PF01032 FecCD transport family NQ550_RS01915 PF13478 XdhC Rossmann domain NQ550_RS01915 PF02625 XdhC and CoxI family NQ550_RS01920 PF00300 Histidine phosphatase superfamily (branch 1) NQ550_RS01920 PF00106 short chain dehydrogenase NQ550_RS01925 PF00483 Nucleotidyl transferase NQ550_RS01925 PF00132 Bacterial transferase hexapeptide (six repeats) NQ550_RS01935 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NQ550_RS01935 PF01799 [2Fe-2S] binding domain NQ550_RS01935 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NQ550_RS01935 PF00111 2Fe-2S iron-sulfur cluster binding domain NQ550_RS01960 PF06463 Molybdenum Cofactor Synthesis C NQ550_RS01960 PF04055 Radical SAM superfamily NQ550_RS01965 PF14535 AMP-binding enzyme C-terminal domain NQ550_RS01965 PF00501 AMP-binding enzyme NQ550_RS01975 PF00793 DAHP synthetase I family NQ550_RS02005 PF00004 ATPase family associated with various cellular activities (AAA) NQ550_RS02005 PF02190 ATP-dependent protease La (LON) substrate-binding domain NQ550_RS02005 PF05362 Lon protease (S16) C-terminal proteolytic domain NQ550_RS02030 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NQ550_RS02030 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NQ550_RS02035 PF03466 LysR substrate binding domain NQ550_RS02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS02040 PF10415 Fumarase C C-terminus NQ550_RS02040 PF00206 Lyase NQ550_RS02045 PF01268 Formate--tetrahydrofolate ligase NQ550_RS02050 PF01276 Orn/Lys/Arg decarboxylase, major domain NQ550_RS02050 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NQ550_RS02055 PF17284 Spermidine synthase tetramerisation domain NQ550_RS02060 PF16653 Saccharopine dehydrogenase C-terminal domain NQ550_RS02060 PF03435 Saccharopine dehydrogenase NADP binding domain NQ550_RS02070 PF04371 Porphyromonas-type peptidyl-arginine deiminase NQ550_RS02075 PF00795 Carbon-nitrogen hydrolase NQ550_RS02095 PF00392 Bacterial regulatory proteins, gntR family NQ550_RS02100 PF11762 L-arabinose isomerase C-terminal domain NQ550_RS02100 PF02610 L-arabinose isomerase NQ550_RS02125 PF12833 Helix-turn-helix domain NQ550_RS02125 PF00072 Response regulator receiver domain NQ550_RS02130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS02130 PF02743 Cache domain NQ550_RS02130 PF00672 HAMP domain NQ550_RS02130 PF06580 Histidine kinase NQ550_RS02145 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS02150 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS02165 PF01261 Xylose isomerase-like TIM barrel NQ550_RS02180 PF01695 IstB-like ATP binding protein NQ550_RS02195 PF00581 Rhodanese-like domain NQ550_RS02200 PF12850 Calcineurin-like phosphoesterase superfamily domain NQ550_RS02205 PF02926 THUMP domain NQ550_RS02205 PF01170 Putative RNA methylase family UPF0020 NQ550_RS02210 PF01725 Ham1 family NQ550_RS02215 PF12850 Calcineurin-like phosphoesterase superfamily domain NQ550_RS02260 PF01048 Phosphorylase superfamily NQ550_RS02270 PF07282 Putative transposase DNA-binding domain NQ550_RS02270 PF12323 Helix-turn-helix domain NQ550_RS02270 PF01385 Probable transposase NQ550_RS02280 PF00872 Transposase, Mutator family NQ550_RS02290 PF04055 Radical SAM superfamily NQ550_RS02290 PF06463 Molybdenum Cofactor Synthesis C NQ550_RS02300 PF00005 ABC transporter NQ550_RS02300 PF00664 ABC transporter transmembrane region NQ550_RS02355 PF00005 ABC transporter NQ550_RS02365 PF00860 Permease family NQ550_RS02370 PF01979 Amidohydrolase family NQ550_RS02375 PF01594 AI-2E family transporter NQ550_RS02385 PF00764 Arginosuccinate synthase NQ550_RS02390 PF01118 Semialdehyde dehydrogenase, NAD binding domain NQ550_RS02390 PF02774 Semialdehyde dehydrogenase, dimerisation domain NQ550_RS02395 PF01960 ArgJ family NQ550_RS02400 PF00696 Amino acid kinase family NQ550_RS02405 PF00202 Aminotransferase class-III NQ550_RS02430 PF04397 LytTr DNA-binding domain NQ550_RS02430 PF00072 Response regulator receiver domain NQ550_RS02445 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS02445 PF08448 PAS fold NQ550_RS02485 PF00535 Glycosyl transferase family 2 NQ550_RS02510 PF10531 SLBB domain NQ550_RS02515 PF00072 Response regulator receiver domain NQ550_RS02515 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS02525 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NQ550_RS02525 PF00037 4Fe-4S binding domain NQ550_RS02525 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NQ550_RS02530 PF01568 Molydopterin dinucleotide binding domain NQ550_RS02530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NQ550_RS02530 PF00384 Molybdopterin oxidoreductase NQ550_RS02550 PF00994 Probable molybdopterin binding domain NQ550_RS02550 PF03454 MoeA C-terminal region (domain IV) NQ550_RS02550 PF03453 MoeA N-terminal region (domain I and II) NQ550_RS02560 PF02634 FdhD/NarQ family NQ550_RS02565 PF06463 Molybdenum Cofactor Synthesis C NQ550_RS02565 PF04055 Radical SAM superfamily NQ550_RS02575 PF12804 MobA-like NTP transferase domain NQ550_RS02595 PF05593 RHS Repeat NQ550_RS02605 PF13426 PAS domain NQ550_RS02605 PF00672 HAMP domain NQ550_RS02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS02605 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS02615 PF03772 Competence protein NQ550_RS02615 PF13567 Domain of unknown function (DUF4131) NQ550_RS02615 PF00753 Metallo-beta-lactamase superfamily NQ550_RS02620 PF00890 FAD binding domain NQ550_RS02625 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NQ550_RS02625 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NQ550_RS02630 PF02829 3H domain NQ550_RS02630 PF08279 HTH domain NQ550_RS02635 PF02445 Quinolinate synthetase A protein NQ550_RS02645 PF01649 Ribosomal protein S20 NQ550_RS02650 PF03418 Germination protease NQ550_RS02660 PF00679 Elongation factor G C-terminus NQ550_RS02660 PF00009 Elongation factor Tu GTP binding domain NQ550_RS02660 PF03144 Elongation factor Tu domain 2 NQ550_RS02660 PF06421 GTP-binding protein LepA C-terminus NQ550_RS02670 PF06969 HemN C-terminal domain NQ550_RS02670 PF04055 Radical SAM superfamily NQ550_RS02675 PF17760 UvrA interaction domain NQ550_RS02675 PF17755 UvrA DNA-binding domain NQ550_RS02685 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NQ550_RS02685 PF13538 UvrD-like helicase C-terminal domain NQ550_RS02685 PF14490 Helix-hairpin-helix containing domain NQ550_RS02705 PF02457 DisA bacterial checkpoint controller nucleotide-binding NQ550_RS02715 PF00381 PTS HPr component phosphorylation site NQ550_RS02720 PF03734 L,D-transpeptidase catalytic domain NQ550_RS02725 PF01183 Glycosyl hydrolases family 25 NQ550_RS02740 PF00535 Glycosyl transferase family 2 NQ550_RS02750 PF02844 Phosphoribosylglycinamide synthetase, N domain NQ550_RS02750 PF02843 Phosphoribosylglycinamide synthetase, C domain NQ550_RS02750 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NQ550_RS02755 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NQ550_RS02760 PF00768 D-alanyl-D-alanine carboxypeptidase NQ550_RS02760 PF07943 Penicillin-binding protein 5, C-terminal domain NQ550_RS02765 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NQ550_RS02770 PF01061 ABC-2 type transporter NQ550_RS02775 PF00005 ABC transporter NQ550_RS02785 PF00535 Glycosyl transferase family 2 NQ550_RS02790 PF00535 Glycosyl transferase family 2 NQ550_RS02800 PF00768 D-alanyl-D-alanine carboxypeptidase NQ550_RS02800 PF07943 Penicillin-binding protein 5, C-terminal domain NQ550_RS02805 PF00535 Glycosyl transferase family 2 NQ550_RS02810 PF00535 Glycosyl transferase family 2 NQ550_RS02815 PF02397 Bacterial sugar transferase NQ550_RS02820 PF03816 Cell envelope-related transcriptional attenuator domain NQ550_RS02825 PF00535 Glycosyl transferase family 2 NQ550_RS02830 PF13180 PDZ domain NQ550_RS02835 PF07724 AAA domain (Cdc48 subfamily) NQ550_RS02835 PF06689 ClpX C4-type zinc finger NQ550_RS02835 PF10431 C-terminal, D2-small domain, of ClpB protein NQ550_RS02860 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NQ550_RS02860 PF00117 Glutamine amidotransferase class-I NQ550_RS02865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NQ550_RS02865 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NQ550_RS02865 PF02142 MGS-like domain NQ550_RS02870 PF02673 Bacitracin resistance protein BacA NQ550_RS02875 PF12727 PBP superfamily domain NQ550_RS02875 PF12728 Helix-turn-helix domain NQ550_RS02880 PF03459 TOBE domain NQ550_RS02890 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS02895 PF00005 ABC transporter NQ550_RS02895 PF03459 TOBE domain NQ550_RS02900 PF05651 Putative sugar diacid recognition NQ550_RS02900 PF17853 GGDEF-like domain NQ550_RS02900 PF13556 PucR C-terminal helix-turn-helix domain NQ550_RS02905 PF00005 ABC transporter NQ550_RS02905 PF17912 MalK OB fold domain NQ550_RS02905 PF03459 TOBE domain NQ550_RS02915 PF01381 Helix-turn-helix NQ550_RS02945 PF01156 Inosine-uridine preferring nucleoside hydrolase NQ550_RS02960 PF01546 Peptidase family M20/M25/M40 NQ550_RS02995 PF03551 Transcriptional regulator PadR-like family NQ550_RS03000 PF01098 Cell cycle protein NQ550_RS03015 PF04397 LytTr DNA-binding domain NQ550_RS03015 PF00072 Response regulator receiver domain NQ550_RS03055 PF00005 ABC transporter NQ550_RS03065 PF00872 Transposase, Mutator family NQ550_RS03080 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS03080 PF00072 Response regulator receiver domain NQ550_RS03085 PF16736 Single Cache-like NQ550_RS03085 PF00989 PAS fold NQ550_RS03085 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS03085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS03105 PF01554 MatE NQ550_RS03110 PF02580 D-Tyr-tRNA(Tyr) deacylase NQ550_RS03115 PF03807 NADP oxidoreductase coenzyme F420-dependent NQ550_RS03115 PF14748 Pyrroline-5-carboxylate reductase dimerisation NQ550_RS03120 PF01928 CYTH domain NQ550_RS03125 PF01546 Peptidase family M20/M25/M40 NQ550_RS03135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NQ550_RS03135 PF05698 Bacterial trigger factor protein (TF) C-terminus NQ550_RS03135 PF05697 Bacterial trigger factor protein (TF) NQ550_RS03140 PF00574 Clp protease NQ550_RS03145 PF10431 C-terminal, D2-small domain, of ClpB protein NQ550_RS03145 PF06689 ClpX C4-type zinc finger NQ550_RS03145 PF07724 AAA domain (Cdc48 subfamily) NQ550_RS03150 PF05362 Lon protease (S16) C-terminal proteolytic domain NQ550_RS03150 PF00004 ATPase family associated with various cellular activities (AAA) NQ550_RS03150 PF02190 ATP-dependent protease La (LON) substrate-binding domain NQ550_RS03155 PF01926 50S ribosome-binding GTPase NQ550_RS03160 PF00005 ABC transporter NQ550_RS03170 PF02361 Cobalt transport protein NQ550_RS03175 PF01416 tRNA pseudouridine synthase NQ550_RS03180 PF00572 Ribosomal protein L13 NQ550_RS03185 PF00380 Ribosomal protein S9/S16 NQ550_RS03200 PF01381 Helix-turn-helix NQ550_RS03210 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS03210 PF00072 Response regulator receiver domain NQ550_RS03215 PF00989 PAS fold NQ550_RS03215 PF16736 Single Cache-like NQ550_RS03215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS03215 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS03220 PF00005 ABC transporter NQ550_RS03250 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS03250 PF00072 Response regulator receiver domain NQ550_RS03255 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS03255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS03260 PF00005 ABC transporter NQ550_RS03280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS03280 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS03285 PF00072 Response regulator receiver domain NQ550_RS03285 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS03290 PF00005 ABC transporter NQ550_RS03320 PF00209 Sodium:neurotransmitter symporter family NQ550_RS03330 PF02581 Thiamine monophosphate synthase NQ550_RS03335 PF08543 Phosphomethylpyrimidine kinase NQ550_RS03335 PF02581 Thiamine monophosphate synthase NQ550_RS03340 PF01734 Patatin-like phospholipase NQ550_RS03350 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS03355 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS03365 PF12833 Helix-turn-helix domain NQ550_RS03365 PF00072 Response regulator receiver domain NQ550_RS03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS03370 PF00672 HAMP domain NQ550_RS03370 PF02743 Cache domain NQ550_RS03370 PF06580 Histidine kinase NQ550_RS03375 PF00392 Bacterial regulatory proteins, gntR family NQ550_RS03375 PF07702 UTRA domain NQ550_RS03380 PF00005 ABC transporter NQ550_RS03395 PF01032 FecCD transport family NQ550_RS03400 PF00005 ABC transporter NQ550_RS03420 PF14492 Elongation Factor G, domain II NQ550_RS03420 PF03764 Elongation factor G, domain IV NQ550_RS03420 PF00009 Elongation factor Tu GTP binding domain NQ550_RS03420 PF00679 Elongation factor G C-terminus NQ550_RS03425 PF01272 Transcription elongation factor, GreA/GreB, C-term NQ550_RS03425 PF03449 Transcription elongation factor, N-terminal NQ550_RS03430 PF02690 Na+/Pi-cotransporter NQ550_RS03435 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS03435 PF00072 Response regulator receiver domain NQ550_RS03440 PF00989 PAS fold NQ550_RS03440 PF16736 Single Cache-like NQ550_RS03440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS03440 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS03445 PF13416 Bacterial extracellular solute-binding protein NQ550_RS03455 PF01547 Bacterial extracellular solute-binding protein NQ550_RS03465 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS03475 PF01636 Phosphotransferase enzyme family NQ550_RS03480 PF16363 GDP-mannose 4,6 dehydratase NQ550_RS03495 PF00795 Carbon-nitrogen hydrolase NQ550_RS03500 PF03009 Glycerophosphoryl diester phosphodiesterase family NQ550_RS03505 PF08903 Domain of unknown function (DUF1846) NQ550_RS03510 PF00004 ATPase family associated with various cellular activities (AAA) NQ550_RS03510 PF17862 AAA+ lid domain NQ550_RS03510 PF06480 FtsH Extracellular NQ550_RS03510 PF01434 Peptidase family M41 NQ550_RS03515 PF12826 Helix-hairpin-helix motif NQ550_RS03515 PF01541 GIY-YIG catalytic domain NQ550_RS03515 PF08459 UvrC Helix-hairpin-helix N-terminal NQ550_RS03515 PF02151 UvrB/uvrC motif NQ550_RS03520 PF02603 HPr Serine kinase N terminus NQ550_RS03520 PF07475 HPr Serine kinase C-terminal domain NQ550_RS03525 PF00480 ROK family NQ550_RS03530 PF00905 Penicillin binding protein transpeptidase domain NQ550_RS03530 PF00912 Transglycosylase NQ550_RS03535 PF01205 Uncharacterized protein family UPF0029 NQ550_RS03535 PF09186 Domain of unknown function (DUF1949) NQ550_RS03540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NQ550_RS03545 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NQ550_RS03550 PF00814 Glycoprotease family NQ550_RS03555 PF00583 Acetyltransferase (GNAT) family NQ550_RS03560 PF12706 Beta-lactamase superfamily domain NQ550_RS03565 PF00814 Glycoprotease family NQ550_RS03570 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NQ550_RS03650 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NQ550_RS03650 PF13538 UvrD-like helicase C-terminal domain NQ550_RS03650 PF14490 Helix-hairpin-helix containing domain NQ550_RS03670 PF04203 Sortase domain NQ550_RS03710 PF00072 Response regulator receiver domain NQ550_RS03710 PF04397 LytTr DNA-binding domain NQ550_RS03725 PF04055 Radical SAM superfamily NQ550_RS03725 PF13186 Iron-sulfur cluster-binding domain NQ550_RS03735 PF04397 LytTr DNA-binding domain NQ550_RS03735 PF00072 Response regulator receiver domain NQ550_RS03745 PF00882 Zinc dependent phospholipase C NQ550_RS03755 PF00005 ABC transporter NQ550_RS03755 PF00664 ABC transporter transmembrane region NQ550_RS03770 PF04055 Radical SAM superfamily NQ550_RS03770 PF06463 Molybdenum Cofactor Synthesis C NQ550_RS03785 PF00005 ABC transporter NQ550_RS03785 PF02687 FtsX-like permease family NQ550_RS03785 PF12704 MacB-like periplasmic core domain NQ550_RS03795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS03800 PF00072 Response regulator receiver domain NQ550_RS03800 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS03805 PF01381 Helix-turn-helix NQ550_RS03815 PF02772 S-adenosylmethionine synthetase, central domain NQ550_RS03815 PF02773 S-adenosylmethionine synthetase, C-terminal domain NQ550_RS03815 PF00438 S-adenosylmethionine synthetase, N-terminal domain NQ550_RS03825 PF00072 Response regulator receiver domain NQ550_RS03825 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS03830 PF00239 Resolvase, N terminal domain NQ550_RS03830 PF02796 Helix-turn-helix domain of resolvase NQ550_RS03900 PF03120 NAD-dependent DNA ligase OB-fold domain NQ550_RS03900 PF00533 BRCA1 C Terminus (BRCT) domain NQ550_RS03900 PF12826 Helix-hairpin-helix motif NQ550_RS03900 PF01653 NAD-dependent DNA ligase adenylation domain NQ550_RS03910 PF13333 Integrase core domain NQ550_RS03910 PF13276 HTH-like domain NQ550_RS03910 PF00665 Integrase core domain NQ550_RS03985 PF00072 Response regulator receiver domain NQ550_RS03985 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS03990 PF00005 ABC transporter NQ550_RS04010 PF00664 ABC transporter transmembrane region NQ550_RS04010 PF00005 ABC transporter NQ550_RS04010 PF03412 Peptidase C39 family NQ550_RS04030 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS04030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS04075 PF00877 NlpC/P60 family NQ550_RS04105 PF06463 Molybdenum Cofactor Synthesis C NQ550_RS04105 PF04055 Radical SAM superfamily NQ550_RS04130 PF00072 Response regulator receiver domain NQ550_RS04130 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS04135 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS04135 PF00672 HAMP domain NQ550_RS04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS04140 PF00005 ABC transporter NQ550_RS04165 PF03412 Peptidase C39 family NQ550_RS04165 PF00664 ABC transporter transmembrane region NQ550_RS04165 PF00005 ABC transporter NQ550_RS04210 PF01938 TRAM domain NQ550_RS04210 PF00919 Uncharacterized protein family UPF0004 NQ550_RS04210 PF04055 Radical SAM superfamily NQ550_RS04220 PF04055 Radical SAM superfamily NQ550_RS04220 PF13186 Iron-sulfur cluster-binding domain NQ550_RS04225 PF06463 Molybdenum Cofactor Synthesis C NQ550_RS04225 PF04055 Radical SAM superfamily NQ550_RS04230 PF02310 B12 binding domain NQ550_RS04230 PF04055 Radical SAM superfamily NQ550_RS04235 PF00005 ABC transporter NQ550_RS04290 PF04397 LytTr DNA-binding domain NQ550_RS04290 PF00072 Response regulator receiver domain NQ550_RS04300 PF03062 MBOAT, membrane-bound O-acyltransferase family NQ550_RS04325 PF01790 Prolipoprotein diacylglyceryl transferase NQ550_RS04330 PF06280 Fn3-like domain NQ550_RS04330 PF00746 LPXTG cell wall anchor motif NQ550_RS04330 PF02225 PA domain NQ550_RS04330 PF00082 Subtilase family NQ550_RS04335 PF00860 Permease family NQ550_RS04340 PF00365 Phosphofructokinase NQ550_RS04345 PF00005 ABC transporter NQ550_RS04345 PF00664 ABC transporter transmembrane region NQ550_RS04365 PF04203 Sortase domain NQ550_RS04370 PF02146 Sir2 family NQ550_RS04375 PF06107 Bacterial protein of unknown function (DUF951) NQ550_RS04380 PF01250 Ribosomal protein S6 NQ550_RS04385 PF00436 Single-strand binding protein family NQ550_RS04390 PF01084 Ribosomal protein S18 NQ550_RS04395 PF01368 DHH family NQ550_RS04395 PF02272 DHHA1 domain NQ550_RS04400 PF03948 Ribosomal protein L9, C-terminal domain NQ550_RS04400 PF01281 Ribosomal protein L9, N-terminal domain NQ550_RS04405 PF00772 DnaB-like helicase N terminal domain NQ550_RS04405 PF03796 DnaB-like helicase C terminal domain NQ550_RS04415 PF12838 4Fe-4S dicluster domain NQ550_RS04425 PF00005 ABC transporter NQ550_RS04430 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS04435 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS04445 PF05389 Negative regulator of genetic competence (MecA) NQ550_RS04460 PF01520 N-acetylmuramoyl-L-alanine amidase NQ550_RS04485 PF03481 Putative GTP-binding controlling metal-binding NQ550_RS04485 PF01300 Telomere recombination NQ550_RS04490 PF02502 Ribose/Galactose Isomerase NQ550_RS04495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NQ550_RS04500 PF09180 Prolyl-tRNA synthetase, C-terminal NQ550_RS04500 PF03129 Anticodon binding domain NQ550_RS04500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NQ550_RS04505 PF01743 Poly A polymerase head domain NQ550_RS04505 PF12627 Probable RNA and SrmB- binding site of polymerase A NQ550_RS04505 PF13735 tRNA nucleotidyltransferase domain 2 putative NQ550_RS04515 PF00216 Bacterial DNA-binding protein NQ550_RS04520 PF01479 S4 domain NQ550_RS04525 PF07873 YabP family NQ550_RS04545 PF11734 TilS substrate C-terminal domain NQ550_RS04545 PF01171 PP-loop family NQ550_RS04550 PF00156 Phosphoribosyl transferase domain NQ550_RS04555 PF00004 ATPase family associated with various cellular activities (AAA) NQ550_RS04555 PF17862 AAA+ lid domain NQ550_RS04555 PF01434 Peptidase family M41 NQ550_RS04555 PF06480 FtsH Extracellular NQ550_RS04560 PF00128 Alpha amylase, catalytic domain NQ550_RS04560 PF02903 Alpha amylase, N-terminal ig-like domain NQ550_RS04570 PF01116 Fructose-bisphosphate aldolase class-II NQ550_RS04600 PF01229 Glycosyl hydrolases family 39 NQ550_RS04605 PF02743 Cache domain NQ550_RS04605 PF00672 HAMP domain NQ550_RS04605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS04605 PF06580 Histidine kinase NQ550_RS04610 PF12833 Helix-turn-helix domain NQ550_RS04610 PF00072 Response regulator receiver domain NQ550_RS04620 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS04625 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS04635 PF07687 Peptidase dimerisation domain NQ550_RS04635 PF01546 Peptidase family M20/M25/M40 NQ550_RS04640 PF01145 SPFH domain / Band 7 family NQ550_RS04645 PF01145 SPFH domain / Band 7 family NQ550_RS04670 PF01348 Type II intron maturase NQ550_RS04670 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ550_RS04690 PF00258 Flavodoxin NQ550_RS04690 PF00753 Metallo-beta-lactamase superfamily NQ550_RS04700 PF04542 Sigma-70 region 2 NQ550_RS04700 PF08281 Sigma-70, region 4 NQ550_RS04710 PF00390 Malic enzyme, N-terminal domain NQ550_RS04710 PF03949 Malic enzyme, NAD binding domain NQ550_RS04725 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS04730 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS04735 PF01554 MatE NQ550_RS04745 PF02503 Polyphosphate kinase middle domain NQ550_RS04745 PF13090 Polyphosphate kinase C-terminal domain 2 NQ550_RS04745 PF17941 Polyphosphate kinase C-terminal domain 1 NQ550_RS04745 PF13089 Polyphosphate kinase N-terminal domain NQ550_RS04760 PF00132 Bacterial transferase hexapeptide (six repeats) NQ550_RS04785 PF04070 Domain of unknown function (DUF378) NQ550_RS04820 PF06180 Cobalt chelatase (CbiK) NQ550_RS04825 PF00196 Bacterial regulatory proteins, luxR family NQ550_RS04825 PF00072 Response regulator receiver domain NQ550_RS04850 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS04855 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS04870 PF12833 Helix-turn-helix domain NQ550_RS04870 PF02311 AraC-like ligand binding domain NQ550_RS04875 PF00128 Alpha amylase, catalytic domain NQ550_RS04880 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS04885 PF00128 Alpha amylase, catalytic domain NQ550_RS04890 PF00781 Diacylglycerol kinase catalytic domain NQ550_RS04900 PF00303 Thymidylate synthase NQ550_RS04905 PF00186 Dihydrofolate reductase NQ550_RS04910 PF01063 Amino-transferase class IV NQ550_RS04920 PF05816 Toxic anion resistance protein (TelA) NQ550_RS04925 PF04551 GcpE protein NQ550_RS04930 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NQ550_RS04930 PF02811 PHP domain NQ550_RS04930 PF07733 Bacterial DNA polymerase III alpha NTPase domain NQ550_RS04930 PF11490 DNA polymerase III polC-type N-terminus II NQ550_RS04930 PF00929 Exonuclease NQ550_RS04930 PF14579 Helix-hairpin-helix motif NQ550_RS04935 PF06874 Firmicute fructose-1,6-bisphosphatase NQ550_RS04940 PF00156 Phosphoribosyl transferase domain NQ550_RS04950 PF01381 Helix-turn-helix NQ550_RS04955 PF01078 Magnesium chelatase, subunit ChlI NQ550_RS04955 PF13335 Magnesium chelatase, subunit ChlI C-terminal NQ550_RS04960 PF02481 DNA recombination-mediator protein A NQ550_RS04960 PF17782 DprA winged helix domain NQ550_RS04965 PF01131 DNA topoisomerase NQ550_RS04965 PF01751 Toprim domain NQ550_RS04965 PF01396 Topoisomerase DNA binding C4 zinc finger NQ550_RS04970 PF06018 CodY GAF-like domain NQ550_RS04970 PF08222 CodY helix-turn-helix domain NQ550_RS04975 PF00166 Chaperonin 10 Kd subunit NQ550_RS04980 PF00118 TCP-1/cpn60 chaperonin family NQ550_RS04990 PF00571 CBS domain NQ550_RS04990 PF00478 IMP dehydrogenase / GMP reductase domain NQ550_RS04995 PF01510 N-acetylmuramoyl-L-alanine amidase NQ550_RS04995 PF01471 Putative peptidoglycan binding domain NQ550_RS05005 PF01808 AICARFT/IMPCHase bienzyme NQ550_RS05005 PF02142 MGS-like domain NQ550_RS05030 PF01053 Cys/Met metabolism PLP-dependent enzyme NQ550_RS05040 PF00465 Iron-containing alcohol dehydrogenase NQ550_RS05050 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS05055 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS05060 PF02743 Cache domain NQ550_RS05060 PF06580 Histidine kinase NQ550_RS05060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS05060 PF00672 HAMP domain NQ550_RS05065 PF12833 Helix-turn-helix domain NQ550_RS05065 PF00072 Response regulator receiver domain NQ550_RS05070 PF14310 Fibronectin type III-like domain NQ550_RS05070 PF00933 Glycosyl hydrolase family 3 N terminal domain NQ550_RS05070 PF01915 Glycosyl hydrolase family 3 C-terminal domain NQ550_RS05070 PF07691 PA14 domain NQ550_RS05080 PF00464 Serine hydroxymethyltransferase NQ550_RS05085 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ550_RS05090 PF00085 Thioredoxin NQ550_RS05105 PF00588 SpoU rRNA Methylase family NQ550_RS05110 PF00440 Bacterial regulatory proteins, tetR family NQ550_RS05115 PF06100 MCRA family NQ550_RS05120 PF01979 Amidohydrolase family NQ550_RS05120 PF13382 Adenine deaminase C-terminal domain NQ550_RS05125 PF00989 PAS fold NQ550_RS05125 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS05125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS05125 PF16736 Single Cache-like NQ550_RS05130 PF00072 Response regulator receiver domain NQ550_RS05130 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS05135 PF01713 Smr domain NQ550_RS05135 PF00488 MutS domain V NQ550_RS05150 PF01336 OB-fold nucleic acid binding domain NQ550_RS05150 PF01966 HD domain NQ550_RS05155 PF05958 tRNA (Uracil-5-)-methyltransferase NQ550_RS05155 PF01938 TRAM domain NQ550_RS05165 PF02463 RecF/RecN/SMC N terminal domain NQ550_RS05170 PF00580 UvrD/REP helicase N-terminal domain NQ550_RS05170 PF12705 PD-(D/E)XK nuclease superfamily NQ550_RS05170 PF13361 UvrD-like helicase C-terminal domain NQ550_RS05185 PF03852 DNA mismatch endonuclease Vsr NQ550_RS05185 PF04480 Protein of unknown function (DUF559) NQ550_RS05230 PF01695 IstB-like ATP binding protein NQ550_RS05275 PF04397 LytTr DNA-binding domain NQ550_RS05275 PF00072 Response regulator receiver domain NQ550_RS05310 PF00005 ABC transporter NQ550_RS05410 PF00239 Resolvase, N terminal domain NQ550_RS05410 PF02796 Helix-turn-helix domain of resolvase NQ550_RS05415 PF02659 Putative manganese efflux pump NQ550_RS05420 PF06207 Protein of unknown function (DUF1002) NQ550_RS05430 PF10672 S-adenosylmethionine-dependent methyltransferase NQ550_RS05430 PF17785 PUA-like domain NQ550_RS05450 PF00226 DnaJ domain NQ550_RS05450 PF00684 DnaJ central domain NQ550_RS05450 PF01556 DnaJ C terminal domain NQ550_RS05455 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain NQ550_RS05465 PF08239 Bacterial SH3 domain NQ550_RS05465 PF00877 NlpC/P60 family NQ550_RS05465 PF01476 LysM domain NQ550_RS05470 PF00936 BMC domain NQ550_RS05475 PF00936 BMC domain NQ550_RS05480 PF10662 Ethanolamine utilisation - propanediol utilisation NQ550_RS05505 PF01228 Glycine radical NQ550_RS05505 PF02901 Pyruvate formate lyase-like NQ550_RS05510 PF04055 Radical SAM superfamily NQ550_RS05515 PF00596 Class II Aldolase and Adducin N-terminal domain NQ550_RS05520 PF00171 Aldehyde dehydrogenase family NQ550_RS05525 PF00107 Zinc-binding dehydrogenase NQ550_RS05525 PF08240 Alcohol dehydrogenase GroES-like domain NQ550_RS05535 PF00936 BMC domain NQ550_RS05545 PF00936 BMC domain NQ550_RS05550 PF06130 Phosphate propanoyltransferase NQ550_RS05555 PF03319 Ethanolamine utilisation protein EutN/carboxysome NQ550_RS05560 PF13375 RnfC Barrel sandwich hybrid domain NQ550_RS05560 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NQ550_RS05560 PF13237 4Fe-4S dicluster domain NQ550_RS05560 PF10531 SLBB domain NQ550_RS05570 PF00455 DeoR C terminal sensor domain NQ550_RS05570 PF08220 DeoR-like helix-turn-helix domain NQ550_RS05575 PF00465 Iron-containing alcohol dehydrogenase NQ550_RS05580 PF03928 Haem-degrading NQ550_RS05585 PF12833 Helix-turn-helix domain NQ550_RS05585 PF02311 AraC-like ligand binding domain NQ550_RS05590 PF07882 L-fucose isomerase, second N-terminal domain NQ550_RS05590 PF07881 L-fucose isomerase, first N-terminal domain NQ550_RS05590 PF02952 L-fucose isomerase, C-terminal domain NQ550_RS05595 PF05025 RbsD / FucU transport protein family NQ550_RS05600 PF00072 Response regulator receiver domain NQ550_RS05600 PF12833 Helix-turn-helix domain NQ550_RS05605 PF00672 HAMP domain NQ550_RS05605 PF06580 Histidine kinase NQ550_RS05605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS05605 PF02743 Cache domain NQ550_RS05610 PF13407 Periplasmic binding protein domain NQ550_RS05615 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS05620 PF00005 ABC transporter NQ550_RS05625 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS05635 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NQ550_RS05635 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NQ550_RS05640 PF01171 PP-loop family NQ550_RS05650 PF00731 AIR carboxylase NQ550_RS05655 PF01969 Protein of unknown function DUF111 NQ550_RS05660 PF00072 Response regulator receiver domain NQ550_RS05660 PF04397 LytTr DNA-binding domain NQ550_RS05680 PF04647 Accessory gene regulator B NQ550_RS05720 PF16338 Domain of unknown function (DUF4968) NQ550_RS05720 PF17137 Domain of unknown function (DUF5110) NQ550_RS05720 PF01055 Glycosyl hydrolases family 31 NQ550_RS05720 PF13802 Galactose mutarotase-like NQ550_RS05725 PF01235 Sodium:alanine symporter family NQ550_RS05765 PF00128 Alpha amylase, catalytic domain NQ550_RS05765 PF02903 Alpha amylase, N-terminal ig-like domain NQ550_RS05785 PF02361 Cobalt transport protein NQ550_RS05790 PF00005 ABC transporter NQ550_RS05810 PF18389 TrmO C-terminal domain NQ550_RS05810 PF01980 tRNA-methyltransferase O NQ550_RS05815 PF13840 ACT domain NQ550_RS05815 PF00696 Amino acid kinase family NQ550_RS05820 PF00929 Exonuclease NQ550_RS05820 PF13307 Helicase C-terminal domain NQ550_RS05830 PF13685 Iron-containing alcohol dehydrogenase NQ550_RS05835 PF02542 YgbB family NQ550_RS05840 PF01406 tRNA synthetases class I (C) catalytic domain NQ550_RS05840 PF09190 DALR domain NQ550_RS05845 PF00636 Ribonuclease III domain NQ550_RS05850 PF00588 SpoU rRNA Methylase family NQ550_RS05850 PF08032 RNA 2'-O ribose methyltransferase substrate binding NQ550_RS05855 PF08281 Sigma-70, region 4 NQ550_RS05855 PF04542 Sigma-70 region 2 NQ550_RS05865 PF00749 tRNA synthetases class I (E and Q), catalytic domain NQ550_RS05865 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NQ550_RS05875 PF02545 Maf-like protein NQ550_RS05880 PF13419 Haloacid dehalogenase-like hydrolase NQ550_RS05900 PF00183 Hsp90 protein NQ550_RS05905 PF08769 Sporulation initiation factor Spo0A C terminal NQ550_RS05905 PF00072 Response regulator receiver domain NQ550_RS05915 PF02645 Uncharacterised protein, DegV family COG1307 NQ550_RS05925 PF00313 'Cold-shock' DNA-binding domain NQ550_RS05930 PF01979 Amidohydrolase family NQ550_RS05935 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NQ550_RS05940 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NQ550_RS05940 PF00175 Oxidoreductase NAD-binding domain NQ550_RS05945 PF01180 Dihydroorotate dehydrogenase NQ550_RS05950 PF00156 Phosphoribosyl transferase domain NQ550_RS05975 PF00731 AIR carboxylase NQ550_RS05980 PF00586 AIR synthase related protein, N-terminal domain NQ550_RS05980 PF02769 AIR synthase related protein, C-terminal domain NQ550_RS05985 PF00551 Formyl transferase NQ550_RS05990 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NQ550_RS05990 PF02843 Phosphoribosylglycinamide synthetase, C domain NQ550_RS05990 PF02844 Phosphoribosylglycinamide synthetase, N domain NQ550_RS06010 PF00004 ATPase family associated with various cellular activities (AAA) NQ550_RS06010 PF07724 AAA domain (Cdc48 subfamily) NQ550_RS06010 PF17871 AAA lid domain NQ550_RS06010 PF02861 Clp amino terminal domain, pathogenicity island component NQ550_RS06010 PF10431 C-terminal, D2-small domain, of ClpB protein NQ550_RS06020 PF18073 Rubredoxin metal binding domain NQ550_RS06025 PF13419 Haloacid dehalogenase-like hydrolase NQ550_RS06030 PF00209 Sodium:neurotransmitter symporter family NQ550_RS06035 PF03466 LysR substrate binding domain NQ550_RS06035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS06075 PF04397 LytTr DNA-binding domain NQ550_RS06075 PF00072 Response regulator receiver domain NQ550_RS06145 PF00005 ABC transporter NQ550_RS06165 PF02632 BioY family NQ550_RS06170 PF06968 Biotin and Thiamin Synthesis associated domain NQ550_RS06170 PF04055 Radical SAM superfamily NQ550_RS06180 PF00202 Aminotransferase class-III NQ550_RS06180 PF06968 Biotin and Thiamin Synthesis associated domain NQ550_RS06180 PF04055 Radical SAM superfamily NQ550_RS06185 PF14310 Fibronectin type III-like domain NQ550_RS06185 PF01915 Glycosyl hydrolase family 3 C-terminal domain NQ550_RS06185 PF00933 Glycosyl hydrolase family 3 N terminal domain NQ550_RS06190 PF02805 Metal binding domain of Ada NQ550_RS06190 PF12833 Helix-turn-helix domain NQ550_RS06200 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS06205 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS06210 PF00005 ABC transporter NQ550_RS06215 PF00497 Bacterial extracellular solute-binding proteins, family 3 NQ550_RS06220 PF01522 Polysaccharide deacetylase NQ550_RS06225 PF03952 Enolase, N-terminal domain NQ550_RS06225 PF00113 Enolase, C-terminal TIM barrel domain NQ550_RS06230 PF03840 Preprotein translocase SecG subunit NQ550_RS06235 PF00773 RNB domain NQ550_RS06235 PF00575 S1 RNA binding domain NQ550_RS06235 PF17876 Cold shock domain NQ550_RS06235 PF08206 Ribonuclease B OB domain NQ550_RS06240 PF01668 SmpB protein NQ550_RS06255 PF00696 Amino acid kinase family NQ550_RS06260 PF01765 Ribosome recycling factor NQ550_RS06265 PF01255 Putative undecaprenyl diphosphate synthase NQ550_RS06275 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NQ550_RS06275 PF13288 DXP reductoisomerase C-terminal domain NQ550_RS06275 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NQ550_RS06280 PF17820 PDZ domain NQ550_RS06280 PF02163 Peptidase family M50 NQ550_RS06285 PF17151 Periplasmic sensor domain NQ550_RS06285 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS06290 PF04474 Protein of unknown function (DUF554) NQ550_RS06305 PF02441 Flavoprotein NQ550_RS06325 PF01966 HD domain NQ550_RS06325 PF13286 Phosphohydrolase-associated domain NQ550_RS06330 PF08275 DNA primase catalytic core, N-terminal domain NQ550_RS06330 PF01807 CHC2 zinc finger NQ550_RS06330 PF10410 DnaB-helicase binding domain of primase NQ550_RS06335 PF03979 Sigma-70 factor, region 1.1 NQ550_RS06335 PF00140 Sigma-70 factor, region 1.2 NQ550_RS06335 PF04542 Sigma-70 region 2 NQ550_RS06335 PF04539 Sigma-70 region 3 NQ550_RS06335 PF04545 Sigma-70, region 4 NQ550_RS06345 PF01784 NIF3 (NGG1p interacting factor 3) NQ550_RS06350 PF03129 Anticodon binding domain NQ550_RS06350 PF02824 TGS domain NQ550_RS06350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NQ550_RS06350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NQ550_RS06360 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NQ550_RS06360 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NQ550_RS06365 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NQ550_RS06365 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NQ550_RS06375 PF02875 Mur ligase family, glutamate ligase domain NQ550_RS06375 PF08245 Mur ligase middle domain NQ550_RS06380 PF01817 Chorismate mutase type II NQ550_RS06380 PF00800 Prephenate dehydratase NQ550_RS06395 PF13090 Polyphosphate kinase C-terminal domain 2 NQ550_RS06395 PF02503 Polyphosphate kinase middle domain NQ550_RS06395 PF13089 Polyphosphate kinase N-terminal domain NQ550_RS06395 PF17941 Polyphosphate kinase C-terminal domain 1 NQ550_RS06405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS06405 PF00986 DNA gyrase B subunit, carboxyl terminus NQ550_RS06405 PF01751 Toprim domain NQ550_RS06405 PF00204 DNA gyrase B NQ550_RS06410 PF03989 DNA gyrase C-terminal domain, beta-propeller NQ550_RS06410 PF00521 DNA gyrase/topoisomerase IV, subunit A NQ550_RS06415 PF02576 RimP N-terminal domain NQ550_RS06415 PF17384 RimP C-terminal SH3 domain NQ550_RS06420 PF13184 NusA-like KH domain NQ550_RS06420 PF08529 NusA N-terminal domain NQ550_RS06420 PF00575 S1 RNA binding domain NQ550_RS06425 PF04296 Protein of unknown function (DUF448) NQ550_RS06430 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NQ550_RS06435 PF00009 Elongation factor Tu GTP binding domain NQ550_RS06435 PF11987 Translation-initiation factor 2 NQ550_RS06435 PF04760 Translation initiation factor IF-2, N-terminal region NQ550_RS06435 PF00009 Elongation factor Tu GTP binding domain NQ550_RS06435 PF11987 Translation-initiation factor 2 NQ550_RS06435 PF04760 Translation initiation factor IF-2, N-terminal region NQ550_RS06440 PF02033 Ribosome-binding factor A NQ550_RS06450 PF01509 TruB family pseudouridylate synthase (N terminal domain) NQ550_RS06450 PF16198 tRNA pseudouridylate synthase B C-terminal domain NQ550_RS06455 PF06574 FAD synthetase NQ550_RS06455 PF01687 Riboflavin kinase NQ550_RS06460 PF00312 Ribosomal protein S15 NQ550_RS06465 PF03725 3' exoribonuclease family, domain 2 NQ550_RS06465 PF01138 3' exoribonuclease family, domain 1 NQ550_RS06465 PF00013 KH domain NQ550_RS06465 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NQ550_RS06465 PF00575 S1 RNA binding domain NQ550_RS06475 PF00692 dUTPase NQ550_RS06480 PF07055 Enoyl reductase FAD binding domain NQ550_RS06480 PF12241 Trans-2-enoyl-CoA reductase catalytic region NQ550_RS06480 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NQ550_RS06490 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain NQ550_RS06490 PF02837 Glycosyl hydrolases family 2, sugar binding domain NQ550_RS06490 PF00703 Glycosyl hydrolases family 2 NQ550_RS06500 PF03372 Endonuclease/Exonuclease/phosphatase family NQ550_RS06505 PF00128 Alpha amylase, catalytic domain NQ550_RS06505 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NQ550_RS06515 PF00474 Sodium:solute symporter family NQ550_RS06520 PF03275 UDP-galactopyranose mutase NQ550_RS06530 PF00675 Insulinase (Peptidase family M16) NQ550_RS06530 PF08367 Peptidase M16C associated NQ550_RS06530 PF05193 Peptidase M16 inactive domain NQ550_RS06535 PF07650 KH domain NQ550_RS06535 PF01926 50S ribosome-binding GTPase NQ550_RS06540 PF11967 Recombination protein O N terminal NQ550_RS06540 PF02565 Recombination protein O C terminal NQ550_RS06545 PF03129 Anticodon binding domain NQ550_RS06545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NQ550_RS06550 PF01566 Natural resistance-associated macrophage protein NQ550_RS06555 PF02682 Carboxyltransferase domain, subdomain C and D NQ550_RS06560 PF02626 Carboxyltransferase domain, subdomain A and B NQ550_RS06565 PF00364 Biotin-requiring enzyme NQ550_RS06570 PF00289 Biotin carboxylase, N-terminal domain NQ550_RS06570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NQ550_RS06570 PF02785 Biotin carboxylase C-terminal domain NQ550_RS06575 PF03746 LamB/YcsF family NQ550_RS06585 PF16868 NMT1-like family NQ550_RS06595 PF04321 RmlD substrate binding domain NQ550_RS06600 PF16363 GDP-mannose 4,6 dehydratase NQ550_RS06605 PF00483 Nucleotidyl transferase NQ550_RS06610 PF06445 GyrI-like small molecule binding domain NQ550_RS06610 PF13411 MerR HTH family regulatory protein NQ550_RS06620 PF01757 Acyltransferase family NQ550_RS06620 PF00842 Alanine racemase, C-terminal domain NQ550_RS06620 PF01168 Alanine racemase, N-terminal domain NQ550_RS06630 PF01554 MatE NQ550_RS06640 PF01053 Cys/Met metabolism PLP-dependent enzyme NQ550_RS06645 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS06650 PF00005 ABC transporter NQ550_RS06660 PF01066 CDP-alcohol phosphatidyltransferase NQ550_RS06665 PF02666 Phosphatidylserine decarboxylase NQ550_RS06670 PF02677 Epoxyqueuosine reductase QueH NQ550_RS06675 PF14698 Argininosuccinate lyase C-terminal NQ550_RS06675 PF00206 Lyase NQ550_RS06680 PF02774 Semialdehyde dehydrogenase, dimerisation domain NQ550_RS06680 PF01118 Semialdehyde dehydrogenase, NAD binding domain NQ550_RS06690 PF02769 AIR synthase related protein, C-terminal domain NQ550_RS06690 PF00586 AIR synthase related protein, N-terminal domain NQ550_RS06695 PF01226 Formate/nitrite transporter NQ550_RS06700 PF01751 Toprim domain NQ550_RS06700 PF01131 DNA topoisomerase NQ550_RS06705 PF12804 MobA-like NTP transferase domain NQ550_RS06705 PF00132 Bacterial transferase hexapeptide (six repeats) NQ550_RS06765 PF03458 UPF0126 domain NQ550_RS06770 PF01613 Flavin reductase like domain NQ550_RS06785 PF04397 LytTr DNA-binding domain NQ550_RS06785 PF00072 Response regulator receiver domain NQ550_RS06825 PF00909 Ammonium Transporter Family NQ550_RS06830 PF00120 Glutamine synthetase, catalytic domain NQ550_RS06830 PF18318 Glutamine synthetase C-terminal domain NQ550_RS06830 PF12437 Glutamine synthetase type III N terminal NQ550_RS06835 PF00156 Phosphoribosyl transferase domain NQ550_RS06845 PF06418 CTP synthase N-terminus NQ550_RS06845 PF00117 Glutamine amidotransferase class-I NQ550_RS06850 PF01645 Conserved region in glutamate synthase NQ550_RS06850 PF01493 GXGXG motif NQ550_RS06850 PF04898 Glutamate synthase central domain NQ550_RS06850 PF00310 Glutamine amidotransferases class-II NQ550_RS06855 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ550_RS06855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NQ550_RS06880 PF13732 Domain of unknown function (DUF4162) NQ550_RS06880 PF00005 ABC transporter NQ550_RS06895 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system NQ550_RS06900 PF03951 Glutamine synthetase, beta-Grasp domain NQ550_RS06900 PF00120 Glutamine synthetase, catalytic domain NQ550_RS06910 PF00152 tRNA synthetases class II (D, K and N) NQ550_RS06910 PF01336 OB-fold nucleic acid binding domain NQ550_RS06915 PF02686 Glu-tRNAGln amidotransferase C subunit NQ550_RS06920 PF01425 Amidase NQ550_RS06925 PF02637 GatB domain NQ550_RS06925 PF02934 GatB/GatE catalytic domain NQ550_RS06930 PF00155 Aminotransferase class I and II NQ550_RS06945 PF13173 AAA domain NQ550_RS06945 PF13635 Domain of unknown function (DUF4143) NQ550_RS06980 PF03733 Inner membrane component domain NQ550_RS07000 PF13614 AAA domain NQ550_RS07005 PF02195 ParB-like nuclease domain NQ550_RS07020 PF00145 C-5 cytosine-specific DNA methylase NQ550_RS07025 PF00145 C-5 cytosine-specific DNA methylase NQ550_RS07030 PF07728 AAA domain (dynein-related subfamily) NQ550_RS07040 PF03852 DNA mismatch endonuclease Vsr NQ550_RS07040 PF04480 Protein of unknown function (DUF559) NQ550_RS07055 PF01695 IstB-like ATP binding protein NQ550_RS07095 PF00293 NUDIX domain NQ550_RS07120 PF01327 Polypeptide deformylase NQ550_RS07125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NQ550_RS07130 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NQ550_RS07135 PF00817 impB/mucB/samB family NQ550_RS07135 PF11798 IMS family HHH motif NQ550_RS07135 PF11799 impB/mucB/samB family C-terminal domain NQ550_RS07145 PF01227 GTP cyclohydrolase I NQ550_RS07150 PF01966 HD domain NQ550_RS07150 PF00013 KH domain NQ550_RS07150 PF12072 Domain of unknown function (DUF3552) NQ550_RS07155 PF00809 Pterin binding enzyme NQ550_RS07160 PF02152 Dihydroneopterin aldolase NQ550_RS07160 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NQ550_RS07165 PF07883 Cupin domain NQ550_RS07165 PF05899 Protein of unknown function (DUF861) NQ550_RS07170 PF02127 Aminopeptidase I zinc metalloprotease (M18) NQ550_RS07190 PF10369 Small subunit of acetolactate synthase NQ550_RS07195 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NQ550_RS07195 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NQ550_RS07210 PF04397 LytTr DNA-binding domain NQ550_RS07210 PF00072 Response regulator receiver domain NQ550_RS07225 PF01979 Amidohydrolase family NQ550_RS07230 PF01206 Sulfurtransferase TusA NQ550_RS07250 PF02664 S-Ribosylhomocysteinase (LuxS) NQ550_RS07255 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NQ550_RS07260 PF06962 Putative rRNA methylase NQ550_RS07265 PF04127 DNA / pantothenate metabolism flavoprotein NQ550_RS07265 PF02441 Flavoprotein NQ550_RS07270 PF03309 Type III pantothenate kinase NQ550_RS07275 PF00849 RNA pseudouridylate synthase NQ550_RS07280 PF01554 MatE NQ550_RS07285 PF01888 CbiD NQ550_RS07290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NQ550_RS07295 PF11761 Cobalamin biosynthesis central region NQ550_RS07295 PF11760 Cobalamin synthesis G N-terminal NQ550_RS07295 PF01890 Cobalamin synthesis G C-terminus NQ550_RS07300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NQ550_RS07300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NQ550_RS07305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NQ550_RS07310 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NQ550_RS07310 PF07685 CobB/CobQ-like glutamine amidotransferase domain NQ550_RS07315 PF03186 CobD/Cbib protein NQ550_RS07320 PF00155 Aminotransferase class I and II NQ550_RS07325 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NQ550_RS07325 PF07685 CobB/CobQ-like glutamine amidotransferase domain NQ550_RS07330 PF02570 Precorrin-8X methylmutase NQ550_RS07335 PF00155 Aminotransferase class I and II NQ550_RS07335 PF00392 Bacterial regulatory proteins, gntR family NQ550_RS07355 PF01022 Bacterial regulatory protein, arsR family NQ550_RS07365 PF02386 Cation transport protein NQ550_RS07370 PF02080 TrkA-C domain NQ550_RS07370 PF02254 TrkA-N domain NQ550_RS07375 PF02702 Osmosensitive K+ channel His kinase sensor domain NQ550_RS07375 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS07375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS07375 PF13493 Domain of unknown function (DUF4118) NQ550_RS07380 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS07380 PF00072 Response regulator receiver domain NQ550_RS07395 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NQ550_RS07395 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NQ550_RS07395 PF01488 Shikimate / quinate 5-dehydrogenase NQ550_RS07400 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NQ550_RS07400 PF01488 Shikimate / quinate 5-dehydrogenase NQ550_RS07405 PF03900 Porphobilinogen deaminase, C-terminal domain NQ550_RS07405 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NQ550_RS07410 PF02602 Uroporphyrinogen-III synthase HemD NQ550_RS07410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NQ550_RS07415 PF00490 Delta-aminolevulinic acid dehydratase NQ550_RS07420 PF00202 Aminotransferase class-III NQ550_RS07425 PF10282 Lactonase, 7-bladed beta-propeller NQ550_RS07430 PF01264 Chorismate synthase NQ550_RS07445 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NQ550_RS07445 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NQ550_RS07470 PF17862 AAA+ lid domain NQ550_RS07470 PF01434 Peptidase family M41 NQ550_RS07470 PF06480 FtsH Extracellular NQ550_RS07470 PF00004 ATPase family associated with various cellular activities (AAA) NQ550_RS07480 PF00476 DNA polymerase family A NQ550_RS07480 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NQ550_RS07480 PF01367 5'-3' exonuclease, C-terminal SAM fold NQ550_RS07485 PF01121 Dephospho-CoA kinase NQ550_RS07490 PF00753 Metallo-beta-lactamase superfamily NQ550_RS07500 PF05167 Uncharacterised ACR (DUF711) NQ550_RS07505 PF00155 Aminotransferase class I and II NQ550_RS07515 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS07520 PF00005 ABC transporter NQ550_RS07545 PF05636 HIGH Nucleotidyl Transferase NQ550_RS07550 PF01515 Phosphate acetyl/butaryl transferase NQ550_RS07555 PF00871 Acetokinase family NQ550_RS07565 PF01783 Ribosomal L32p protein family NQ550_RS07585 PF00072 Response regulator receiver domain NQ550_RS07585 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS07595 PF00005 ABC transporter NQ550_RS07595 PF16326 ABC transporter C-terminal domain NQ550_RS07595 PF12848 ABC transporter NQ550_RS07600 PF02504 Fatty acid synthesis protein NQ550_RS07605 PF00550 Phosphopantetheine attachment site NQ550_RS07610 PF14622 Ribonuclease-III-like NQ550_RS07610 PF00035 Double-stranded RNA binding motif NQ550_RS07615 PF02463 RecF/RecN/SMC N terminal domain NQ550_RS07615 PF06470 SMC proteins Flexible Hinge Domain NQ550_RS07620 PF00448 SRP54-type protein, GTPase domain NQ550_RS07620 PF02881 SRP54-type protein, helical bundle domain NQ550_RS07625 PF00291 Pyridoxal-phosphate dependent enzyme NQ550_RS07625 PF13291 ACT domain NQ550_RS07660 PF00005 ABC transporter NQ550_RS07665 PF00005 ABC transporter NQ550_RS07665 PF04954 Siderophore-interacting protein NQ550_RS07665 PF00664 ABC transporter transmembrane region NQ550_RS07665 PF08021 Siderophore-interacting FAD-binding domain NQ550_RS07670 PF00664 ABC transporter transmembrane region NQ550_RS07670 PF00005 ABC transporter NQ550_RS07690 PF04297 Putative helix-turn-helix protein, YlxM / p13 like NQ550_RS07695 PF02978 Signal peptide binding domain NQ550_RS07695 PF00448 SRP54-type protein, GTPase domain NQ550_RS07695 PF02881 SRP54-type protein, helical bundle domain NQ550_RS07700 PF00886 Ribosomal protein S16 NQ550_RS07710 PF05239 PRC-barrel domain NQ550_RS07710 PF01782 RimM N-terminal domain NQ550_RS07715 PF01746 tRNA (Guanine-1)-methyltransferase NQ550_RS07720 PF02547 Queuosine biosynthesis protein NQ550_RS07725 PF09587 Bacterial capsule synthesis protein PGA_cap NQ550_RS07740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NQ550_RS07740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NQ550_RS07745 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NQ550_RS07750 PF01842 ACT domain NQ550_RS07750 PF02153 Prephenate dehydrogenase NQ550_RS07755 PF00679 Elongation factor G C-terminus NQ550_RS07755 PF14492 Elongation Factor G, domain II NQ550_RS07755 PF03764 Elongation factor G, domain IV NQ550_RS07755 PF00009 Elongation factor Tu GTP binding domain NQ550_RS07755 PF03144 Elongation factor Tu domain 2 NQ550_RS07760 PF13603 Leucyl-tRNA synthetase, Domain 2 NQ550_RS07760 PF09334 tRNA synthetases class I (M) NQ550_RS07760 PF08264 Anticodon-binding domain of tRNA NQ550_RS07760 PF00133 tRNA synthetases class I (I, L, M and V) NQ550_RS07765 PF01554 MatE NQ550_RS07770 PF12848 ABC transporter NQ550_RS07770 PF00005 ABC transporter NQ550_RS07775 PF05670 NFACT protein RNA binding domain NQ550_RS07780 PF08340 Domain of unknown function (DUF1732) NQ550_RS07780 PF03755 YicC-like family, N-terminal region NQ550_RS07785 PF04025 Domain of unknown function (DUF370) NQ550_RS07790 PF00625 Guanylate kinase NQ550_RS07795 PF01192 RNA polymerase Rpb6 NQ550_RS07800 PF00919 Uncharacterized protein family UPF0004 NQ550_RS07800 PF04055 Radical SAM superfamily NQ550_RS07800 PF18693 TRAM domain NQ550_RS07805 PF01066 CDP-alcohol phosphatidyltransferase NQ550_RS07810 PF02464 Competence-damaged protein NQ550_RS07810 PF18146 Damage-inducible protein CinA KH domain NQ550_RS07810 PF00994 Probable molybdopterin binding domain NQ550_RS07840 PF00579 tRNA synthetases class I (W and Y) NQ550_RS07845 PF02272 DHHA1 domain NQ550_RS07845 PF01411 tRNA synthetases class II (A) NQ550_RS07845 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NQ550_RS07850 PF01165 Ribosomal protein S21 NQ550_RS07855 PF13091 PLD-like domain NQ550_RS07860 PF07943 Penicillin-binding protein 5, C-terminal domain NQ550_RS07860 PF00768 D-alanyl-D-alanine carboxypeptidase NQ550_RS07875 PF02616 Segregation and condensation protein ScpA NQ550_RS07880 PF04079 Segregation and condensation complex subunit ScpB NQ550_RS07890 PF07943 Penicillin-binding protein 5, C-terminal domain NQ550_RS07890 PF00768 D-alanyl-D-alanine carboxypeptidase NQ550_RS07895 PF01202 Shikimate kinase NQ550_RS07935 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS07935 PF00072 Response regulator receiver domain NQ550_RS07940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS07940 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS07945 PF00005 ABC transporter NQ550_RS07965 PF01797 Transposase IS200 like NQ550_RS07975 PF01418 Helix-turn-helix domain, rpiR family NQ550_RS07975 PF01380 SIS domain NQ550_RS07980 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NQ550_RS07985 PF02378 Phosphotransferase system, EIIC NQ550_RS07990 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NQ550_RS07995 PF00232 Glycosyl hydrolase family 1 NQ550_RS08000 PF00186 Dihydrofolate reductase NQ550_RS08020 PF09035 Excisionase from transposon Tn916 NQ550_RS08025 PF02920 DNA binding domain of tn916 integrase NQ550_RS08025 PF00589 Phage integrase family NQ550_RS08035 PF00072 Response regulator receiver domain NQ550_RS08035 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS08040 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS08040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS08045 PF00005 ABC transporter NQ550_RS08060 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS08060 PF18698 Histidine kinase sensor domain NQ550_RS08060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS08060 PF00672 HAMP domain NQ550_RS08060 PF00989 PAS fold NQ550_RS08065 PF00072 Response regulator receiver domain NQ550_RS08065 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS08075 PF00005 ABC transporter NQ550_RS08110 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ550_RS08175 PF13492 GAF domain NQ550_RS08175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS08175 PF07694 5TMR of 5TMR-LYT NQ550_RS08175 PF06580 Histidine kinase NQ550_RS08185 PF01547 Bacterial extracellular solute-binding protein NQ550_RS08190 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS08195 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS08200 PF00072 Response regulator receiver domain NQ550_RS08200 PF12833 Helix-turn-helix domain NQ550_RS08205 PF01546 Peptidase family M20/M25/M40 NQ550_RS08210 PF00248 Aldo/keto reductase family NQ550_RS08215 PF03313 Serine dehydratase alpha chain NQ550_RS08220 PF01487 Type I 3-dehydroquinase NQ550_RS08225 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NQ550_RS08225 PF08501 Shikimate dehydrogenase substrate binding domain NQ550_RS08230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NQ550_RS08230 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ550_RS08235 PF01039 Carboxyl transferase domain NQ550_RS08245 PF00364 Biotin-requiring enzyme NQ550_RS08250 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit NQ550_RS08255 PF00682 HMGL-like NQ550_RS08255 PF02436 Conserved carboxylase domain NQ550_RS08255 PF00364 Biotin-requiring enzyme NQ550_RS08265 PF02224 Cytidylate kinase NQ550_RS08270 PF02401 LytB protein NQ550_RS08275 PF02401 LytB protein NQ550_RS08275 PF00575 S1 RNA binding domain NQ550_RS08285 PF02706 Chain length determinant protein NQ550_RS08290 PF13614 AAA domain NQ550_RS08315 PF02397 Bacterial sugar transferase NQ550_RS08320 PF03275 UDP-galactopyranose mutase NQ550_RS08335 PF01228 Glycine radical NQ550_RS08335 PF02901 Pyruvate formate lyase-like NQ550_RS08340 PF04991 LicD family NQ550_RS08350 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NQ550_RS08355 PF16363 GDP-mannose 4,6 dehydratase NQ550_RS08360 PF00596 Class II Aldolase and Adducin N-terminal domain NQ550_RS08380 PF04055 Radical SAM superfamily NQ550_RS08535 PF05105 Bacteriophage holin family NQ550_RS08560 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NQ550_RS08585 PF02899 Phage integrase, N-terminal SAM-like domain NQ550_RS08585 PF00589 Phage integrase family NQ550_RS08675 PF16123 Hydroxyacylglutathione hydrolase C-terminus NQ550_RS08675 PF00753 Metallo-beta-lactamase superfamily NQ550_RS08690 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ550_RS08695 PF01695 IstB-like ATP binding protein NQ550_RS08700 PF00665 Integrase core domain NQ550_RS08700 PF08281 Sigma-70, region 4 NQ550_RS08705 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS08705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS08715 PF00005 ABC transporter NQ550_RS08720 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS08720 PF00072 Response regulator receiver domain NQ550_RS08735 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS08735 PF00072 Response regulator receiver domain NQ550_RS08740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS08740 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS08740 PF00672 HAMP domain NQ550_RS08795 PF01695 IstB-like ATP binding protein NQ550_RS08805 PF13276 HTH-like domain NQ550_RS08805 PF00665 Integrase core domain NQ550_RS08805 PF13333 Integrase core domain NQ550_RS08865 PF02261 Aspartate decarboxylase NQ550_RS08870 PF02569 Pantoate-beta-alanine ligase NQ550_RS08875 PF01758 Sodium Bile acid symporter family NQ550_RS08880 PF02525 Flavodoxin-like fold NQ550_RS08890 PF02001 Protein of unknown function DUF134 NQ550_RS08900 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ550_RS08900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NQ550_RS08940 PF01261 Xylose isomerase-like TIM barrel NQ550_RS08960 PF00550 Phosphopantetheine attachment site NQ550_RS08960 PF00501 AMP-binding enzyme NQ550_RS08960 PF00668 Condensation domain NQ550_RS08960 PF13193 AMP-binding enzyme C-terminal domain NQ550_RS08965 PF01740 STAS domain NQ550_RS08970 PF01648 4'-phosphopantetheinyl transferase superfamily NQ550_RS08980 PF10531 SLBB domain NQ550_RS08980 PF13237 4Fe-4S dicluster domain NQ550_RS08980 PF13375 RnfC Barrel sandwich hybrid domain NQ550_RS08980 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NQ550_RS08985 PF03116 NQR2, RnfD, RnfE family NQ550_RS08990 PF04205 FMN-binding domain NQ550_RS08995 PF02508 Rnf-Nqr subunit, membrane protein NQ550_RS09000 PF02508 Rnf-Nqr subunit, membrane protein NQ550_RS09005 PF13187 4Fe-4S dicluster domain NQ550_RS09005 PF00037 4Fe-4S binding domain NQ550_RS09005 PF04060 Putative Fe-S cluster NQ550_RS09010 PF07499 RuvA, C-terminal domain NQ550_RS09010 PF01330 RuvA N terminal domain NQ550_RS09015 PF17864 RuvB AAA lid domain NQ550_RS09015 PF05491 RuvB C-terminal winged helix domain NQ550_RS09015 PF05496 Holliday junction DNA helicase RuvB P-loop domain NQ550_RS09020 PF05164 Cell division protein ZapA NQ550_RS09025 PF01136 Peptidase family U32 NQ550_RS09025 PF16325 Peptidase family U32 C-terminal domain NQ550_RS09030 PF01098 Cell cycle protein NQ550_RS09035 PF00905 Penicillin binding protein transpeptidase domain NQ550_RS09040 PF00293 NUDIX domain NQ550_RS09060 PF00830 Ribosomal L28 family NQ550_RS09070 PF13684 Dihydroxyacetone kinase family NQ550_RS09070 PF02734 DAK2 domain NQ550_RS09075 PF00270 DEAD/DEAH box helicase NQ550_RS09075 PF00271 Helicase conserved C-terminal domain NQ550_RS09075 PF17191 RecG wedge domain NQ550_RS09085 PF02421 Ferrous iron transport protein B NQ550_RS09085 PF07670 Nucleoside recognition NQ550_RS09085 PF17910 FeoB cytosolic helical domain NQ550_RS09085 PF04023 FeoA domain NQ550_RS09085 PF07664 Ferrous iron transport protein B C terminus NQ550_RS09090 PF00269 Small, acid-soluble spore proteins, alpha/beta type NQ550_RS09095 PF02142 MGS-like domain NQ550_RS09105 PF01467 Cytidylyltransferase-like NQ550_RS09120 PF01546 Peptidase family M20/M25/M40 NQ550_RS09120 PF07687 Peptidase dimerisation domain NQ550_RS09125 PF04607 Region found in RelA / SpoT proteins NQ550_RS09130 PF11842 Domain of unknown function (DUF3362) NQ550_RS09130 PF08497 Radical SAM N-terminal NQ550_RS09130 PF04055 Radical SAM superfamily NQ550_RS09140 PF00849 RNA pseudouridylate synthase NQ550_RS09140 PF01479 S4 domain NQ550_RS09145 PF10502 Signal peptidase, peptidase S26 NQ550_RS09150 PF03838 Recombination protein U NQ550_RS09155 PF13393 Histidyl-tRNA synthetase NQ550_RS09160 PF01634 ATP phosphoribosyltransferase NQ550_RS09165 PF00815 Histidinol dehydrogenase NQ550_RS09170 PF00475 Imidazoleglycerol-phosphate dehydratase NQ550_RS09180 PF06180 Cobalt chelatase (CbiK) NQ550_RS09195 PF01032 FecCD transport family NQ550_RS09200 PF00005 ABC transporter NQ550_RS09205 PF00535 Glycosyl transferase family 2 NQ550_RS09220 PF01380 SIS domain NQ550_RS09225 PF00535 Glycosyl transferase family 2 NQ550_RS09250 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NQ550_RS09250 PF00056 lactate/malate dehydrogenase, NAD binding domain NQ550_RS09265 PF01593 Flavin containing amine oxidoreductase NQ550_RS09285 PF00175 Oxidoreductase NAD-binding domain NQ550_RS09285 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NQ550_RS09295 PF02910 Fumarate reductase flavoprotein C-term NQ550_RS09295 PF00890 FAD binding domain NQ550_RS09300 PF05683 Fumarase C-terminus NQ550_RS09300 PF05681 Fumarate hydratase (Fumerase) NQ550_RS09320 PF00037 4Fe-4S binding domain NQ550_RS09320 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NQ550_RS09320 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NQ550_RS09325 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NQ550_RS09325 PF02906 Iron only hydrogenase large subunit, C-terminal domain NQ550_RS09325 PF02256 Iron hydrogenase small subunit NQ550_RS09325 PF00037 4Fe-4S binding domain NQ550_RS09330 PF09547 Stage IV sporulation protein A (spore_IV_A) NQ550_RS09340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NQ550_RS09340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NQ550_RS09345 PF01259 SAICAR synthetase NQ550_RS09360 PF04055 Radical SAM superfamily NQ550_RS09360 PF06968 Biotin and Thiamin Synthesis associated domain NQ550_RS09370 PF07650 KH domain NQ550_RS09370 PF01926 50S ribosome-binding GTPase NQ550_RS09390 PF02421 Ferrous iron transport protein B NQ550_RS09390 PF17910 FeoB cytosolic helical domain NQ550_RS09390 PF07664 Ferrous iron transport protein B C terminus NQ550_RS09390 PF07670 Nucleoside recognition NQ550_RS09390 PF04023 FeoA domain NQ550_RS09400 PF01475 Ferric uptake regulator family NQ550_RS09430 PF00403 Heavy-metal-associated domain NQ550_RS09435 PF01022 Bacterial regulatory protein, arsR family NQ550_RS09455 PF12801 4Fe-4S binding domain NQ550_RS09460 PF02424 ApbE family NQ550_RS09490 PF00113 Enolase, C-terminal TIM barrel domain NQ550_RS09490 PF03952 Enolase, N-terminal domain NQ550_RS09500 PF00285 Citrate synthase, C-terminal domain NQ550_RS09510 PF03772 Competence protein NQ550_RS09510 PF13567 Domain of unknown function (DUF4131) NQ550_RS09510 PF00753 Metallo-beta-lactamase superfamily NQ550_RS09520 PF02903 Alpha amylase, N-terminal ig-like domain NQ550_RS09520 PF00128 Alpha amylase, catalytic domain NQ550_RS09520 PF16657 Maltogenic Amylase, C-terminal domain NQ550_RS09525 PF01042 Endoribonuclease L-PSP NQ550_RS09570 PF10502 Signal peptidase, peptidase S26 NQ550_RS09605 PF01551 Peptidase family M23 NQ550_RS09605 PF01464 Transglycosylase SLT domain NQ550_RS09605 PF10145 Phage-related minor tail protein NQ550_RS09620 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer NQ550_RS09680 PF00313 'Cold-shock' DNA-binding domain NQ550_RS09715 PF09820 Predicted AAA-ATPase NQ550_RS09715 PF08011 PD-(D/E)XK nuclease superfamily NQ550_RS09725 PF04203 Sortase domain NQ550_RS09735 PF00005 ABC transporter NQ550_RS09750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS09755 PF00072 Response regulator receiver domain NQ550_RS09755 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS09765 PF00005 ABC transporter NQ550_RS09770 PF03070 TENA/THI-4/PQQC family NQ550_RS09775 PF02581 Thiamine monophosphate synthase NQ550_RS09775 PF08543 Phosphomethylpyrimidine kinase NQ550_RS09780 PF02581 Thiamine monophosphate synthase NQ550_RS09785 PF13419 Haloacid dehalogenase-like hydrolase NQ550_RS09795 PF00583 Acetyltransferase (GNAT) family NQ550_RS09800 PF00881 Nitroreductase family NQ550_RS09805 PF01638 HxlR-like helix-turn-helix NQ550_RS09810 PF00072 Response regulator receiver domain NQ550_RS09810 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS09815 PF00005 ABC transporter NQ550_RS09825 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS09825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS09840 PF00072 Response regulator receiver domain NQ550_RS09840 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS09845 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS09845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS09845 PF16736 Single Cache-like NQ550_RS09845 PF00989 PAS fold NQ550_RS09850 PF00005 ABC transporter NQ550_RS09850 PF02687 FtsX-like permease family NQ550_RS09850 PF12704 MacB-like periplasmic core domain NQ550_RS09860 PF00005 ABC transporter NQ550_RS09880 PF00072 Response regulator receiver domain NQ550_RS09880 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS09885 PF07689 KaiB domain NQ550_RS09885 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS09885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS09955 PF00145 C-5 cytosine-specific DNA methylase NQ550_RS09965 PF03432 Relaxase/Mobilisation nuclease domain NQ550_RS10025 PF04002 RadC-like JAB domain NQ550_RS10045 PF01507 Phosphoadenosine phosphosulfate reductase family NQ550_RS10055 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain NQ550_RS10055 PF00877 NlpC/P60 family NQ550_RS10070 PF01348 Type II intron maturase NQ550_RS10070 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ550_RS10080 PF01348 Type II intron maturase NQ550_RS10080 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ550_RS10110 PF04397 LytTr DNA-binding domain NQ550_RS10110 PF00072 Response regulator receiver domain NQ550_RS10130 PF13333 Integrase core domain NQ550_RS10130 PF00665 Integrase core domain NQ550_RS10130 PF13276 HTH-like domain NQ550_RS10140 PF13186 Iron-sulfur cluster-binding domain NQ550_RS10140 PF04055 Radical SAM superfamily NQ550_RS10145 PF04055 Radical SAM superfamily NQ550_RS10145 PF06463 Molybdenum Cofactor Synthesis C NQ550_RS10160 PF00005 ABC transporter NQ550_RS10160 PF00664 ABC transporter transmembrane region NQ550_RS10170 PF12704 MacB-like periplasmic core domain NQ550_RS10170 PF02687 FtsX-like permease family NQ550_RS10170 PF00005 ABC transporter NQ550_RS10180 PF00072 Response regulator receiver domain NQ550_RS10180 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS10195 PF00364 Biotin-requiring enzyme NQ550_RS10200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NQ550_RS10200 PF02785 Biotin carboxylase C-terminal domain NQ550_RS10200 PF00289 Biotin carboxylase, N-terminal domain NQ550_RS10205 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NQ550_RS10205 PF17848 Acetyl-coA carboxylase zinc finger domain NQ550_RS10215 PF04397 LytTr DNA-binding domain NQ550_RS10215 PF00072 Response regulator receiver domain NQ550_RS10240 PF13575 Domain of unknown function (DUF4135) NQ550_RS10240 PF05147 Lanthionine synthetase C-like protein NQ550_RS10245 PF01554 MatE NQ550_RS10260 PF04199 Putative cyclase NQ550_RS10265 PF00550 Phosphopantetheine attachment site NQ550_RS10270 PF03364 Polyketide cyclase / dehydrase and lipid transport NQ550_RS10275 PF02801 Beta-ketoacyl synthase, C-terminal domain NQ550_RS10275 PF00109 Beta-ketoacyl synthase, N-terminal domain NQ550_RS10280 PF02801 Beta-ketoacyl synthase, C-terminal domain NQ550_RS10280 PF00109 Beta-ketoacyl synthase, N-terminal domain NQ550_RS10290 PF00698 Acyl transferase domain NQ550_RS10295 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS10295 PF00072 Response regulator receiver domain NQ550_RS10335 PF13408 Recombinase zinc beta ribbon domain NQ550_RS10335 PF00239 Resolvase, N terminal domain NQ550_RS10335 PF07508 Recombinase NQ550_RS10380 PF00575 S1 RNA binding domain NQ550_RS10380 PF10150 Ribonuclease E/G family NQ550_RS10385 PF00829 Ribosomal prokaryotic L21 protein NQ550_RS10395 PF01016 Ribosomal L27 protein NQ550_RS10400 PF01018 GTP1/OBG NQ550_RS10400 PF09269 Domain of unknown function (DUF1967) NQ550_RS10400 PF01926 50S ribosome-binding GTPase NQ550_RS10405 PF01985 CRS1 / YhbY (CRM) domain NQ550_RS10410 PF01467 Cytidylyltransferase-like NQ550_RS10415 PF01966 HD domain NQ550_RS10425 PF01726 LexA DNA binding domain NQ550_RS10425 PF00717 Peptidase S24-like NQ550_RS10435 PF01168 Alanine racemase, N-terminal domain NQ550_RS10440 PF04472 Cell division protein SepF NQ550_RS10450 PF01761 3-dehydroquinate synthase NQ550_RS10455 PF01252 Signal peptidase (SPase) II NQ550_RS10460 PF01479 S4 domain NQ550_RS10460 PF00849 RNA pseudouridylate synthase NQ550_RS10470 PF01594 AI-2E family transporter NQ550_RS10475 PF08460 Bacterial SH3 domain NQ550_RS10475 PF01551 Peptidase family M23 NQ550_RS10480 PF03061 Thioesterase superfamily NQ550_RS10490 PF02899 Phage integrase, N-terminal SAM-like domain NQ550_RS10490 PF00589 Phage integrase family NQ550_RS10505 PF02920 DNA binding domain of tn916 integrase NQ550_RS10505 PF00589 Phage integrase family NQ550_RS10555 PF07943 Penicillin-binding protein 5, C-terminal domain NQ550_RS10555 PF00768 D-alanyl-D-alanine carboxypeptidase NQ550_RS10560 PF01098 Cell cycle protein NQ550_RS10565 PF03776 Septum formation topological specificity factor MinE NQ550_RS10570 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NQ550_RS10575 PF00905 Penicillin binding protein transpeptidase domain NQ550_RS10575 PF03717 Penicillin-binding Protein dimerisation domain NQ550_RS10595 PF12826 Helix-hairpin-helix motif NQ550_RS10595 PF04002 RadC-like JAB domain NQ550_RS10610 PF06838 Methionine gamma-lyase NQ550_RS10620 PF08676 MutL C terminal dimerisation domain NQ550_RS10620 PF01119 DNA mismatch repair protein, C-terminal domain NQ550_RS10625 PF00488 MutS domain V NQ550_RS10625 PF05190 MutS family domain IV NQ550_RS10625 PF05192 MutS domain III NQ550_RS10625 PF05188 MutS domain II NQ550_RS10625 PF01624 MutS domain I NQ550_RS10670 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NQ550_RS10670 PF00953 Glycosyl transferase family 4 NQ550_RS10690 PF01795 MraW methylase family NQ550_RS10695 PF00403 Heavy-metal-associated domain NQ550_RS10700 PF02583 Metal-sensitive transcriptional repressor NQ550_RS10710 PF04055 Radical SAM superfamily NQ550_RS10710 PF00919 Uncharacterized protein family UPF0004 NQ550_RS10710 PF01938 TRAM domain NQ550_RS10725 PF00171 Aldehyde dehydrogenase family NQ550_RS10730 PF01812 5-formyltetrahydrofolate cyclo-ligase family NQ550_RS10735 PF05979 Bacterial protein of unknown function (DUF896) NQ550_RS10740 PF00696 Amino acid kinase family NQ550_RS10740 PF01472 PUA domain NQ550_RS10745 PF02130 Uncharacterized protein family UPF0054 NQ550_RS10750 PF02562 PhoH-like protein NQ550_RS10770 PF02590 Predicted SPOUT methyltransferase NQ550_RS10780 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NQ550_RS10780 PF09397 Ftsk gamma domain NQ550_RS10780 PF17854 FtsK alpha domain NQ550_RS10780 PF01580 FtsK/SpoIIIE family NQ550_RS10785 PF02673 Bacitracin resistance protein BacA NQ550_RS10790 PF03631 Virulence factor BrkB NQ550_RS10795 PF01263 Aldose 1-epimerase NQ550_RS10805 PF00291 Pyridoxal-phosphate dependent enzyme NQ550_RS10820 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NQ550_RS10825 PF04055 Radical SAM superfamily NQ550_RS10830 PF01228 Glycine radical NQ550_RS10830 PF02901 Pyruvate formate lyase-like NQ550_RS10835 PF00682 HMGL-like NQ550_RS10835 PF08502 LeuA allosteric (dimerisation) domain NQ550_RS10860 PF00291 Pyridoxal-phosphate dependent enzyme NQ550_RS10865 PF07687 Peptidase dimerisation domain NQ550_RS10865 PF01546 Peptidase family M20/M25/M40 NQ550_RS10870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NQ550_RS10870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NQ550_RS10875 PF00696 Amino acid kinase family NQ550_RS10885 PF13340 Putative transposase of IS4/5 family (DUF4096) NQ550_RS10890 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NQ550_RS10900 PF02625 XdhC and CoxI family NQ550_RS10900 PF13478 XdhC Rossmann domain NQ550_RS10905 PF01799 [2Fe-2S] binding domain NQ550_RS10905 PF00111 2Fe-2S iron-sulfur cluster binding domain NQ550_RS10910 PF03450 CO dehydrogenase flavoprotein C-terminal domain NQ550_RS10910 PF00941 FAD binding domain in molybdopterin dehydrogenase NQ550_RS10915 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NQ550_RS10915 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NQ550_RS10925 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NQ550_RS10925 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NQ550_RS10930 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ550_RS10930 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NQ550_RS10935 PF01979 Amidohydrolase family NQ550_RS10940 PF00300 Histidine phosphatase superfamily (branch 1) NQ550_RS10945 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NQ550_RS10950 PF02654 Cobalamin-5-phosphate synthase NQ550_RS10960 PF02277 Phosphoribosyltransferase NQ550_RS10965 PF04138 GtrA-like protein NQ550_RS10970 PF00535 Glycosyl transferase family 2 NQ550_RS10975 PF09586 Bacterial membrane protein YfhO NQ550_RS10980 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NQ550_RS10980 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NQ550_RS10980 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NQ550_RS10980 PF10371 Domain of unknown function NQ550_RS10980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ550_RS10985 PF02082 Transcriptional regulator NQ550_RS10990 PF00005 ABC transporter NQ550_RS10990 PF12848 ABC transporter NQ550_RS10995 PF04073 Aminoacyl-tRNA editing domain NQ550_RS11010 PF02920 DNA binding domain of tn916 integrase NQ550_RS11010 PF00589 Phage integrase family NQ550_RS11015 PF09035 Excisionase from transposon Tn916 NQ550_RS11035 PF00664 ABC transporter transmembrane region NQ550_RS11035 PF00005 ABC transporter NQ550_RS11040 PF04954 Siderophore-interacting protein NQ550_RS11040 PF08021 Siderophore-interacting FAD-binding domain NQ550_RS11040 PF00005 ABC transporter NQ550_RS11040 PF00664 ABC transporter transmembrane region NQ550_RS11045 PF06445 GyrI-like small molecule binding domain NQ550_RS11045 PF12833 Helix-turn-helix domain NQ550_RS11055 PF00877 NlpC/P60 family NQ550_RS11110 PF02486 Replication initiation factor NQ550_RS11110 PF18106 Rolling Circle replication initiation protein N-terminal domain NQ550_RS11145 PF06130 Phosphate propanoyltransferase NQ550_RS11155 PF17156 Gammaproteobacterial periplasmic sensor domain NQ550_RS11155 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS11160 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS11160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS11160 PF09308 LuxQ, periplasmic NQ550_RS11160 PF00072 Response regulator receiver domain NQ550_RS11165 PF00874 PRD domain NQ550_RS11165 PF03123 CAT RNA binding domain NQ550_RS11170 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQ550_RS11170 PF00367 phosphotransferase system, EIIB NQ550_RS11170 PF02378 Phosphotransferase system, EIIC NQ550_RS11200 PF00114 Pilin (bacterial filament) NQ550_RS11200 PF07963 Prokaryotic N-terminal methylation motif NQ550_RS11225 PF01478 Type IV leader peptidase family NQ550_RS11225 PF06750 Bacterial Peptidase A24 N-terminal domain NQ550_RS11240 PF00482 Type II secretion system (T2SS), protein F NQ550_RS11245 PF00437 Type II/IV secretion system protein NQ550_RS11250 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NQ550_RS11250 PF00437 Type II/IV secretion system protein NQ550_RS11275 PF04204 Homoserine O-succinyltransferase NQ550_RS11280 PF03120 NAD-dependent DNA ligase OB-fold domain NQ550_RS11280 PF12826 Helix-hairpin-helix motif NQ550_RS11280 PF00533 BRCA1 C Terminus (BRCT) domain NQ550_RS11280 PF01653 NAD-dependent DNA ligase adenylation domain NQ550_RS11290 PF11738 Protein of unknown function (DUF3298) NQ550_RS11290 PF13739 Deacetylase PdaC NQ550_RS11290 PF01522 Polysaccharide deacetylase NQ550_RS11305 PF03553 Na+/H+ antiporter family NQ550_RS11320 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NQ550_RS11320 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NQ550_RS11325 PF00111 2Fe-2S iron-sulfur cluster binding domain NQ550_RS11325 PF01799 [2Fe-2S] binding domain NQ550_RS11345 PF01569 PAP2 superfamily NQ550_RS11365 PF00005 ABC transporter NQ550_RS11370 PF00465 Iron-containing alcohol dehydrogenase NQ550_RS11375 PF00171 Aldehyde dehydrogenase family NQ550_RS11380 PF04607 Region found in RelA / SpoT proteins NQ550_RS11415 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system NQ550_RS11430 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS11430 PF00672 HAMP domain NQ550_RS11430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS11435 PF00072 Response regulator receiver domain NQ550_RS11435 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS11445 PF00005 ABC transporter NQ550_RS11455 PF01554 MatE NQ550_RS11470 PF06445 GyrI-like small molecule binding domain NQ550_RS11470 PF12833 Helix-turn-helix domain NQ550_RS11480 PF00877 NlpC/P60 family NQ550_RS11485 PF04203 Sortase domain NQ550_RS11535 PF03432 Relaxase/Mobilisation nuclease domain NQ550_RS11605 PF17762 HTH domain found in ParB protein NQ550_RS11605 PF02195 ParB-like nuclease domain NQ550_RS11610 PF13614 AAA domain NQ550_RS11620 PF02896 PEP-utilising enzyme, TIM barrel domain NQ550_RS11620 PF00391 PEP-utilising enzyme, mobile domain NQ550_RS11620 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NQ550_RS11625 PF00365 Phosphofructokinase NQ550_RS11635 PF00809 Pterin binding enzyme NQ550_RS11635 PF02607 B12 binding domain NQ550_RS11635 PF02965 Vitamin B12 dependent methionine synthase, activation domain NQ550_RS11635 PF02574 Homocysteine S-methyltransferase NQ550_RS11635 PF02310 B12 binding domain NQ550_RS11650 PF00391 PEP-utilising enzyme, mobile domain NQ550_RS11650 PF02896 PEP-utilising enzyme, TIM barrel domain NQ550_RS11650 PF05524 PEP-utilising enzyme, N-terminal NQ550_RS11655 PF13416 Bacterial extracellular solute-binding protein NQ550_RS11660 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS11665 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS11670 PF00005 ABC transporter NQ550_RS11670 PF08402 TOBE domain NQ550_RS11675 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS11680 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS11685 PF08402 TOBE domain NQ550_RS11685 PF00005 ABC transporter NQ550_RS11695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NQ550_RS11695 PF02806 Alpha amylase, C-terminal all-beta domain NQ550_RS11695 PF00128 Alpha amylase, catalytic domain NQ550_RS11700 PF00294 pfkB family carbohydrate kinase NQ550_RS11715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NQ550_RS11715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NQ550_RS11720 PF00266 Aminotransferase class-V NQ550_RS11725 PF00205 Thiamine pyrophosphate enzyme, central domain NQ550_RS11725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NQ550_RS11725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ550_RS11730 PF00920 Dehydratase family NQ550_RS11735 PF00180 Isocitrate/isopropylmalate dehydrogenase NQ550_RS11740 PF02699 Preprotein translocase subunit NQ550_RS11745 PF01702 Queuine tRNA-ribosyltransferase NQ550_RS11760 PF03167 Uracil DNA glycosylase superfamily NQ550_RS11765 PF00977 Histidine biosynthesis protein NQ550_RS11770 PF00117 Glutamine amidotransferase class-I NQ550_RS11775 PF18698 Histidine kinase sensor domain NQ550_RS11775 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS11775 PF00989 PAS fold NQ550_RS11775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS11775 PF00672 HAMP domain NQ550_RS11780 PF00072 Response regulator receiver domain NQ550_RS11780 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS11795 PF01132 Elongation factor P (EF-P) OB domain NQ550_RS11795 PF08207 Elongation factor P (EF-P) KOW-like domain NQ550_RS11795 PF09285 Elongation factor P, C-terminal NQ550_RS11800 PF01202 Shikimate kinase NQ550_RS11805 PF13344 Haloacid dehalogenase-like hydrolase NQ550_RS11810 PF00285 Citrate synthase, C-terminal domain NQ550_RS11815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NQ550_RS11815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NQ550_RS11820 PF03477 ATP cone domain NQ550_RS11830 PF04539 Sigma-70 region 3 NQ550_RS11830 PF04542 Sigma-70 region 2 NQ550_RS11830 PF04545 Sigma-70, region 4 NQ550_RS11835 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NQ550_RS11845 PF01467 Cytidylyltransferase-like NQ550_RS11845 PF00294 pfkB family carbohydrate kinase NQ550_RS11850 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NQ550_RS11855 PF17103 Stealth protein CR4, conserved region 4 NQ550_RS11855 PF11380 Stealth protein CR2, conserved region 2 NQ550_RS11855 PF17101 Stealth protein CR1, conserved region 1 NQ550_RS11860 PF00534 Glycosyl transferases group 1 NQ550_RS11860 PF13439 Glycosyltransferase Family 4 NQ550_RS11870 PF00005 ABC transporter NQ550_RS11875 PF01061 ABC-2 type transporter NQ550_RS11885 PF08271 TFIIB zinc-binding NQ550_RS11895 PF13581 Histidine kinase-like ATPase domain NQ550_RS11900 PF01740 STAS domain NQ550_RS11905 PF14602 Hexapeptide repeat of succinyl-transferase NQ550_RS11905 PF12464 Maltose acetyltransferase NQ550_RS11910 PF01554 MatE NQ550_RS11920 PF00258 Flavodoxin NQ550_RS11930 PF13476 AAA domain NQ550_RS11935 PF00149 Calcineurin-like phosphoesterase NQ550_RS11935 PF12320 Type 5 capsule protein repressor C-terminal domain NQ550_RS11940 PF00455 DeoR C terminal sensor domain NQ550_RS11940 PF08220 DeoR-like helix-turn-helix domain NQ550_RS11945 PF00381 PTS HPr component phosphorylation site NQ550_RS11945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NQ550_RS11950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NQ550_RS11950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NQ550_RS11955 PF00294 pfkB family carbohydrate kinase NQ550_RS11960 PF01235 Sodium:alanine symporter family NQ550_RS11965 PF01869 BadF/BadG/BcrA/BcrD ATPase family NQ550_RS11975 PF00005 ABC transporter NQ550_RS11975 PF00664 ABC transporter transmembrane region NQ550_RS11980 PF00005 ABC transporter NQ550_RS11980 PF00664 ABC transporter transmembrane region NQ550_RS11985 PF01321 Creatinase/Prolidase N-terminal domain NQ550_RS11985 PF00557 Metallopeptidase family M24 NQ550_RS11990 PF02540 NAD synthase NQ550_RS11995 PF12833 Helix-turn-helix domain NQ550_RS11995 PF12852 Cupin NQ550_RS12005 PF02837 Glycosyl hydrolases family 2, sugar binding domain NQ550_RS12005 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NQ550_RS12005 PF00703 Glycosyl hydrolases family 2 NQ550_RS12005 PF16353 Domain of unknown function(DUF4981) NQ550_RS12005 PF02929 Beta galactosidase small chain NQ550_RS12010 PF12833 Helix-turn-helix domain NQ550_RS12010 PF02311 AraC-like ligand binding domain NQ550_RS12015 PF01381 Helix-turn-helix NQ550_RS12020 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NQ550_RS12020 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NQ550_RS12055 PF00905 Penicillin binding protein transpeptidase domain NQ550_RS12055 PF05569 BlaR1 peptidase M56 NQ550_RS12060 PF01385 Probable transposase NQ550_RS12060 PF12323 Helix-turn-helix domain NQ550_RS12060 PF07282 Putative transposase DNA-binding domain NQ550_RS12070 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS12075 PF00072 Response regulator receiver domain NQ550_RS12075 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS12165 PF01751 Toprim domain NQ550_RS12165 PF01131 DNA topoisomerase NQ550_RS12170 PF18840 Large polyvalent protein associated domain 25 NQ550_RS12200 PF03432 Relaxase/Mobilisation nuclease domain NQ550_RS12220 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS12220 PF00072 Response regulator receiver domain NQ550_RS12225 PF18698 Histidine kinase sensor domain NQ550_RS12225 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS12225 PF00989 PAS fold NQ550_RS12225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS12225 PF00672 HAMP domain NQ550_RS12235 PF00005 ABC transporter NQ550_RS12260 PF09035 Excisionase from transposon Tn916 NQ550_RS12265 PF02920 DNA binding domain of tn916 integrase NQ550_RS12265 PF00589 Phage integrase family NQ550_RS12370 PF17762 HTH domain found in ParB protein NQ550_RS12370 PF02195 ParB-like nuclease domain NQ550_RS12375 PF13614 AAA domain NQ550_RS12390 PF00889 Elongation factor TS NQ550_RS12395 PF00318 Ribosomal protein S2 NQ550_RS12400 PF01479 S4 domain NQ550_RS12400 PF00849 RNA pseudouridylate synthase NQ550_RS12410 PF00005 ABC transporter NQ550_RS12415 PF00392 Bacterial regulatory proteins, gntR family NQ550_RS12425 PF13419 Haloacid dehalogenase-like hydrolase NQ550_RS12435 PF00069 Protein kinase domain NQ550_RS12435 PF03793 PASTA domain NQ550_RS12440 PF00750 tRNA synthetases class I (R) NQ550_RS12440 PF05746 DALR anticodon binding domain NQ550_RS12440 PF03485 Arginyl tRNA synthetase N terminal domain NQ550_RS12445 PF02645 Uncharacterised protein, DegV family COG1307 NQ550_RS12450 PF00391 PEP-utilising enzyme, mobile domain NQ550_RS12450 PF05524 PEP-utilising enzyme, N-terminal NQ550_RS12450 PF02896 PEP-utilising enzyme, TIM barrel domain NQ550_RS12455 PF00381 PTS HPr component phosphorylation site NQ550_RS12460 PF02687 FtsX-like permease family NQ550_RS12460 PF12704 MacB-like periplasmic core domain NQ550_RS12475 PF00005 ABC transporter NQ550_RS12490 PF01925 Sulfite exporter TauE/SafE NQ550_RS12495 PF02938 GAD domain NQ550_RS12495 PF01336 OB-fold nucleic acid binding domain NQ550_RS12495 PF00152 tRNA synthetases class II (D, K and N) NQ550_RS12500 PF13393 Histidyl-tRNA synthetase NQ550_RS12505 PF11871 Domain of unknown function (DUF3391) NQ550_RS12505 PF01966 HD domain NQ550_RS12510 PF04055 Radical SAM superfamily NQ550_RS12515 PF00753 Metallo-beta-lactamase superfamily NQ550_RS12520 PF13291 ACT domain NQ550_RS12520 PF04607 Region found in RelA / SpoT proteins NQ550_RS12520 PF02824 TGS domain NQ550_RS12525 PF00156 Phosphoribosyl transferase domain NQ550_RS12530 PF17768 RecJ OB domain NQ550_RS12530 PF01368 DHH family NQ550_RS12530 PF02272 DHHA1 domain NQ550_RS12530 PF10141 Single-strand DNA-specific exonuclease, C terminal domain NQ550_RS12535 PF02355 Protein export membrane protein NQ550_RS12535 PF07549 SecD/SecF GG Motif NQ550_RS12540 PF04055 Radical SAM superfamily NQ550_RS12560 PF03471 Transporter associated domain NQ550_RS12560 PF01595 Cyclin M transmembrane N-terminal domain NQ550_RS12560 PF00571 CBS domain NQ550_RS12570 PF01520 N-acetylmuramoyl-L-alanine amidase NQ550_RS12580 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS12585 PF00005 ABC transporter NQ550_RS12595 PF01451 Low molecular weight phosphotyrosine protein phosphatase NQ550_RS12600 PF02920 DNA binding domain of tn916 integrase NQ550_RS12600 PF00589 Phage integrase family NQ550_RS12625 PF00672 HAMP domain NQ550_RS12625 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS12630 PF00072 Response regulator receiver domain NQ550_RS12630 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS12635 PF01381 Helix-turn-helix NQ550_RS12645 PF03432 Relaxase/Mobilisation nuclease domain NQ550_RS12660 PF18840 Large polyvalent protein associated domain 25 NQ550_RS12665 PF01751 Toprim domain NQ550_RS12665 PF01131 DNA topoisomerase NQ550_RS12735 PF08275 DNA primase catalytic core, N-terminal domain NQ550_RS12735 PF01807 CHC2 zinc finger NQ550_RS12740 PF03389 MobA/MobL family NQ550_RS12740 PF16793 RepB DNA-primase from phage plasmid NQ550_RS12770 PF01381 Helix-turn-helix NQ550_RS12775 PF00753 Metallo-beta-lactamase superfamily NQ550_RS12825 PF09035 Excisionase from transposon Tn916 NQ550_RS12835 PF10410 DnaB-helicase binding domain of primase NQ550_RS12835 PF01807 CHC2 zinc finger NQ550_RS12835 PF08278 DNA primase DnaG DnaB-binding NQ550_RS12835 PF08275 DNA primase catalytic core, N-terminal domain NQ550_RS12840 PF01443 Viral (Superfamily 1) RNA helicase NQ550_RS12840 PF03389 MobA/MobL family NQ550_RS12840 PF17841 BID domain of Bartonella effector protein (Bep) NQ550_RS12875 PF03575 Peptidase family S51 NQ550_RS12880 PF01348 Type II intron maturase NQ550_RS12880 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ550_RS12890 PF00589 Phage integrase family NQ550_RS12890 PF02920 DNA binding domain of tn916 integrase NQ550_RS12900 PF01695 IstB-like ATP binding protein NQ550_RS12925 PF13183 4Fe-4S dicluster domain NQ550_RS12925 PF13085 2Fe-2S iron-sulfur cluster binding domain NQ550_RS12930 PF02910 Fumarate reductase flavoprotein C-term NQ550_RS12930 PF00890 FAD binding domain NQ550_RS12945 PF00403 Heavy-metal-associated domain NQ550_RS12950 PF01022 Bacterial regulatory protein, arsR family NQ550_RS12980 PF04237 YjbR NQ550_RS12990 PF03432 Relaxase/Mobilisation nuclease domain NQ550_RS12995 PF00072 Response regulator receiver domain NQ550_RS12995 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS13000 PF00589 Phage integrase family NQ550_RS13000 PF02920 DNA binding domain of tn916 integrase NQ550_RS13020 PF02687 FtsX-like permease family NQ550_RS13020 PF12704 MacB-like periplasmic core domain NQ550_RS13020 PF00005 ABC transporter NQ550_RS13025 PF00005 ABC transporter NQ550_RS13025 PF02687 FtsX-like permease family NQ550_RS13025 PF12704 MacB-like periplasmic core domain NQ550_RS13035 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS13035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS13040 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS13040 PF00072 Response regulator receiver domain NQ550_RS13065 PF13614 AAA domain NQ550_RS13085 PF00072 Response regulator receiver domain NQ550_RS13085 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS13090 PF03965 Penicillinase repressor NQ550_RS13095 PF05569 BlaR1 peptidase M56 NQ550_RS13095 PF00905 Penicillin binding protein transpeptidase domain NQ550_RS13125 PF00905 Penicillin binding protein transpeptidase domain NQ550_RS13125 PF05223 NTF2-like N-terminal transpeptidase domain NQ550_RS13125 PF03717 Penicillin-binding Protein dimerisation domain NQ550_RS13145 PF03600 Citrate transporter NQ550_RS13185 PF02899 Phage integrase, N-terminal SAM-like domain NQ550_RS13185 PF00589 Phage integrase family NQ550_RS13190 PF04851 Type III restriction enzyme, res subunit NQ550_RS13190 PF00929 Exonuclease NQ550_RS13190 PF13307 Helicase C-terminal domain NQ550_RS13230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS13235 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS13235 PF00072 Response regulator receiver domain NQ550_RS13245 PF00005 ABC transporter NQ550_RS13255 PF00877 NlpC/P60 family NQ550_RS13310 PF03432 Relaxase/Mobilisation nuclease domain NQ550_RS13330 PF01555 DNA methylase NQ550_RS13345 PF02773 S-adenosylmethionine synthetase, C-terminal domain NQ550_RS13345 PF02772 S-adenosylmethionine synthetase, central domain NQ550_RS13345 PF00438 S-adenosylmethionine synthetase, N-terminal domain NQ550_RS13350 PF04203 Sortase domain NQ550_RS13370 PF00145 C-5 cytosine-specific DNA methylase NQ550_RS13420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS13420 PF03466 LysR substrate binding domain NQ550_RS13435 PF07859 alpha/beta hydrolase fold NQ550_RS13440 PF01979 Amidohydrolase family NQ550_RS13445 PF03606 C4-dicarboxylate anaerobic carrier NQ550_RS13450 PF04607 Region found in RelA / SpoT proteins NQ550_RS13455 PF00005 ABC transporter NQ550_RS13470 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NQ550_RS13475 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NQ550_RS13475 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NQ550_RS13480 PF04961 Formiminotransferase-cyclodeaminase NQ550_RS13495 PF00809 Pterin binding enzyme NQ550_RS13500 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit NQ550_RS13500 PF04060 Putative Fe-S cluster NQ550_RS13505 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit NQ550_RS13510 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain NQ550_RS13510 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit NQ550_RS13515 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain NQ550_RS13515 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit NQ550_RS13520 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NQ550_RS13525 PF03063 Prismane/CO dehydrogenase family NQ550_RS13530 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NQ550_RS13545 PF00248 Aldo/keto reductase family NQ550_RS13550 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NQ550_RS13550 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NQ550_RS13555 PF02660 Glycerol-3-phosphate acyltransferase NQ550_RS13560 PF01926 50S ribosome-binding GTPase NQ550_RS13560 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NQ550_RS13570 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NQ550_RS13570 PF14572 Phosphoribosyl synthetase-associated domain NQ550_RS13575 PF02578 Multi-copper polyphenol oxidoreductase laccase NQ550_RS13580 PF02021 Uncharacterised protein family UPF0102 NQ550_RS13585 PF01351 Ribonuclease HII NQ550_RS13590 PF01926 50S ribosome-binding GTPase NQ550_RS13595 PF10502 Signal peptidase, peptidase S26 NQ550_RS13600 PF01245 Ribosomal protein L19 NQ550_RS13605 PF00557 Metallopeptidase family M24 NQ550_RS13605 PF02810 SEC-C motif NQ550_RS13620 PF00300 Histidine phosphatase superfamily (branch 1) NQ550_RS13625 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NQ550_RS13625 PF03484 tRNA synthetase B5 domain NQ550_RS13625 PF03147 Ferredoxin-fold anticodon binding domain NQ550_RS13625 PF01588 Putative tRNA binding domain NQ550_RS13625 PF03483 B3/4 domain NQ550_RS13630 PF01409 tRNA synthetases class II core domain (F) NQ550_RS13630 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NQ550_RS13635 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ550_RS13635 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NQ550_RS13640 PF00175 Oxidoreductase NAD-binding domain NQ550_RS13640 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NQ550_RS13645 PF00574 Clp protease NQ550_RS13650 PF01709 Transcriptional regulator NQ550_RS13655 PF00571 CBS domain NQ550_RS13655 PF03471 Transporter associated domain NQ550_RS13660 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system NQ550_RS13665 PF00842 Alanine racemase, C-terminal domain NQ550_RS13665 PF01168 Alanine racemase, N-terminal domain NQ550_RS13670 PF01256 Carbohydrate kinase NQ550_RS13670 PF03853 YjeF-related protein N-terminus NQ550_RS13675 PF02629 CoA binding domain NQ550_RS13675 PF06971 Putative DNA-binding protein N-terminus NQ550_RS13680 PF00005 ABC transporter NQ550_RS13680 PF16326 ABC transporter C-terminal domain NQ550_RS13680 PF12848 ABC transporter NQ550_RS13685 PF00180 Isocitrate/isopropylmalate dehydrogenase NQ550_RS13690 PF05922 Peptidase inhibitor I9 NQ550_RS13690 PF00082 Subtilase family NQ550_RS13695 PF04445 Putative SAM-dependent methyltransferase NQ550_RS13700 PF03976 Polyphosphate kinase 2 (PPK2) NQ550_RS13710 PF04237 YjbR NQ550_RS13745 PF08240 Alcohol dehydrogenase GroES-like domain NQ550_RS13745 PF13823 Alcohol dehydrogenase GroES-associated NQ550_RS13745 PF00107 Zinc-binding dehydrogenase NQ550_RS13750 PF00005 ABC transporter NQ550_RS13750 PF08402 TOBE domain NQ550_RS13770 PF00132 Bacterial transferase hexapeptide (six repeats) NQ550_RS13790 PF00689 Cation transporting ATPase, C-terminus NQ550_RS13790 PF00690 Cation transporter/ATPase, N-terminus NQ550_RS13810 PF01554 MatE NQ550_RS13825 PF00459 Inositol monophosphatase family NQ550_RS13835 PF00106 short chain dehydrogenase NQ550_RS13870 PF02384 N-6 DNA Methylase NQ550_RS13925 PF01293 Phosphoenolpyruvate carboxykinase NQ550_RS13935 PF01479 S4 domain NQ550_RS13935 PF00849 RNA pseudouridylate synthase NQ550_RS13940 PF00885 6,7-dimethyl-8-ribityllumazine synthase NQ550_RS13945 PF00925 GTP cyclohydrolase II NQ550_RS13945 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NQ550_RS13950 PF00677 Lumazine binding domain NQ550_RS13955 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NQ550_RS13955 PF01872 RibD C-terminal domain NQ550_RS13960 PF05362 Lon protease (S16) C-terminal proteolytic domain NQ550_RS13960 PF02190 ATP-dependent protease La (LON) substrate-binding domain NQ550_RS13960 PF00004 ATPase family associated with various cellular activities (AAA) NQ550_RS13980 PF01548 Transposase NQ550_RS13980 PF02371 Transposase IS116/IS110/IS902 family NQ550_RS13985 PF00579 tRNA synthetases class I (W and Y) NQ550_RS13990 PF17385 Lacto-N-biose phosphorylase central domain NQ550_RS13990 PF17386 Lacto-N-biose phosphorylase C-terminal domain NQ550_RS13990 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain NQ550_RS13995 PF12833 Helix-turn-helix domain NQ550_RS14005 PF00933 Glycosyl hydrolase family 3 N terminal domain NQ550_RS14005 PF14310 Fibronectin type III-like domain NQ550_RS14005 PF01915 Glycosyl hydrolase family 3 C-terminal domain NQ550_RS14010 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS14015 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS14030 PF06165 Glycosyltransferase family 36 NQ550_RS14030 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NQ550_RS14035 PF12833 Helix-turn-helix domain NQ550_RS14035 PF10114 Sensory domain found in PocR NQ550_RS14050 PF01131 DNA topoisomerase NQ550_RS14050 PF01751 Toprim domain NQ550_RS14055 PF00072 Response regulator receiver domain NQ550_RS14055 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS14065 PF00535 Glycosyl transferase family 2 NQ550_RS14070 PF12323 Helix-turn-helix domain NQ550_RS14070 PF01385 Probable transposase NQ550_RS14070 PF07282 Putative transposase DNA-binding domain NQ550_RS14080 PF00730 HhH-GPD superfamily base excision DNA repair protein NQ550_RS14080 PF14815 NUDIX domain NQ550_RS14095 PF01554 MatE NQ550_RS14100 PF01676 Metalloenzyme superfamily NQ550_RS14100 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NQ550_RS14105 PF00742 Homoserine dehydrogenase NQ550_RS14105 PF01842 ACT domain NQ550_RS14105 PF03447 Homoserine dehydrogenase, NAD binding domain NQ550_RS14130 PF05958 tRNA (Uracil-5-)-methyltransferase NQ550_RS14130 PF01938 TRAM domain NQ550_RS14135 PF00121 Triosephosphate isomerase NQ550_RS14140 PF00162 Phosphoglycerate kinase NQ550_RS14145 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NQ550_RS14145 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NQ550_RS14150 PF02811 PHP domain NQ550_RS14155 PF00128 Alpha amylase, catalytic domain NQ550_RS14165 PF01592 NifU-like N terminal domain NQ550_RS14170 PF00266 Aminotransferase class-V NQ550_RS14175 PF02082 Transcriptional regulator NQ550_RS14180 PF01943 Polysaccharide biosynthesis protein NQ550_RS14180 PF14667 Polysaccharide biosynthesis C-terminal domain NQ550_RS14185 PF00793 DAHP synthetase I family NQ550_RS14190 PF02899 Phage integrase, N-terminal SAM-like domain NQ550_RS14190 PF00589 Phage integrase family NQ550_RS14200 PF12072 Domain of unknown function (DUF3552) NQ550_RS14200 PF01966 HD domain NQ550_RS14200 PF00013 KH domain NQ550_RS14205 PF02631 RecX family NQ550_RS14210 PF00154 recA bacterial DNA recombination protein NQ550_RS14215 PF00534 Glycosyl transferases group 1 NQ550_RS14215 PF08323 Starch synthase catalytic domain NQ550_RS14220 PF00072 Response regulator receiver domain NQ550_RS14220 PF08769 Sporulation initiation factor Spo0A C terminal NQ550_RS14225 PF17820 PDZ domain NQ550_RS14225 PF05580 SpoIVB peptidase S55 NQ550_RS14230 PF02463 RecF/RecN/SMC N terminal domain NQ550_RS14235 PF01316 Arginine repressor, DNA binding domain NQ550_RS14235 PF02863 Arginine repressor, C-terminal domain NQ550_RS14240 PF01513 ATP-NAD kinase NQ550_RS14245 PF01479 S4 domain NQ550_RS14245 PF01728 FtsJ-like methyltransferase NQ550_RS14250 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NQ550_RS14250 PF02780 Transketolase, C-terminal domain NQ550_RS14250 PF02779 Transketolase, pyrimidine binding domain NQ550_RS14255 PF00348 Polyprenyl synthetase NQ550_RS14260 PF02609 Exonuclease VII small subunit NQ550_RS14265 PF02601 Exonuclease VII, large subunit NQ550_RS14265 PF13742 OB-fold nucleic acid binding domain NQ550_RS14270 PF01029 NusB family NQ550_RS14275 PF03780 Asp23 family, cell envelope-related function NQ550_RS14280 PF00009 Elongation factor Tu GTP binding domain NQ550_RS14280 PF16658 Class II release factor RF3, C-terminal domain NQ550_RS14280 PF03144 Elongation factor Tu domain 2 NQ550_RS14305 PF06686 Stage III sporulation protein AC/AD protein family NQ550_RS14330 PF01648 4'-phosphopantetheinyl transferase superfamily NQ550_RS14335 PF00580 UvrD/REP helicase N-terminal domain NQ550_RS14335 PF13361 UvrD-like helicase C-terminal domain NQ550_RS14340 PF00749 tRNA synthetases class I (E and Q), catalytic domain NQ550_RS14345 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NQ550_RS14350 PF00289 Biotin carboxylase, N-terminal domain NQ550_RS14350 PF02785 Biotin carboxylase C-terminal domain NQ550_RS14350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NQ550_RS14355 PF07977 FabA-like domain NQ550_RS14360 PF00364 Biotin-requiring enzyme NQ550_RS14365 PF00109 Beta-ketoacyl synthase, N-terminal domain NQ550_RS14365 PF02801 Beta-ketoacyl synthase, C-terminal domain NQ550_RS14375 PF00698 Acyl transferase domain NQ550_RS14380 PF00550 Phosphopantetheine attachment site NQ550_RS14385 PF01098 Cell cycle protein NQ550_RS14405 PF12706 Beta-lactamase superfamily domain NQ550_RS14425 PF08239 Bacterial SH3 domain NQ550_RS14425 PF01183 Glycosyl hydrolases family 25 NQ550_RS14485 PF02254 TrkA-N domain NQ550_RS14485 PF02080 TrkA-C domain NQ550_RS14490 PF02386 Cation transport protein NQ550_RS14500 PF04545 Sigma-70, region 4 NQ550_RS14500 PF04542 Sigma-70 region 2 NQ550_RS14510 PF08501 Shikimate dehydrogenase substrate binding domain NQ550_RS14510 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NQ550_RS14520 PF01043 SecA preprotein cross-linking domain NQ550_RS14520 PF02810 SEC-C motif NQ550_RS14520 PF07517 SecA DEAD-like domain NQ550_RS14520 PF07516 SecA Wing and Scaffold domain NQ550_RS14530 PF13419 Haloacid dehalogenase-like hydrolase NQ550_RS14535 PF00709 Adenylosuccinate synthetase NQ550_RS14545 PF00005 ABC transporter NQ550_RS14550 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS14555 PF00497 Bacterial extracellular solute-binding proteins, family 3 NQ550_RS14580 PF01554 MatE NQ550_RS14585 PF03060 Nitronate monooxygenase NQ550_RS14590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS14590 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS14590 PF09308 LuxQ, periplasmic NQ550_RS14590 PF00072 Response regulator receiver domain NQ550_RS14600 PF00072 Response regulator receiver domain NQ550_RS14600 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS14600 PF01627 Hpt domain NQ550_RS14600 PF00672 HAMP domain NQ550_RS14600 PF17149 Periplasmic sensor domain found in signal transduction proteins NQ550_RS14600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS14615 PF03063 Prismane/CO dehydrogenase family NQ550_RS14620 PF12833 Helix-turn-helix domain NQ550_RS14630 PF13187 4Fe-4S dicluster domain NQ550_RS14630 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NQ550_RS14630 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NQ550_RS14635 PF00175 Oxidoreductase NAD-binding domain NQ550_RS14635 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NQ550_RS14640 PF17179 4Fe-4S dicluster domain NQ550_RS14660 PF01554 MatE NQ550_RS14720 PF01207 Dihydrouridine synthase (Dus) NQ550_RS14725 PF12072 Domain of unknown function (DUF3552) NQ550_RS14725 PF01966 HD domain NQ550_RS14725 PF00013 KH domain NQ550_RS14735 PF04542 Sigma-70 region 2 NQ550_RS14735 PF04545 Sigma-70, region 4 NQ550_RS14740 PF01136 Peptidase family U32 NQ550_RS14740 PF16325 Peptidase family U32 C-terminal domain NQ550_RS14745 PF01596 O-methyltransferase NQ550_RS14760 PF00753 Metallo-beta-lactamase superfamily NQ550_RS14760 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NQ550_RS14760 PF17770 Ribonuclease J C-terminal domain NQ550_RS14770 PF03652 Holliday junction resolvase NQ550_RS14775 PF06135 IreB regulatory phosphoprotein NQ550_RS14780 PF00919 Uncharacterized protein family UPF0004 NQ550_RS14780 PF01938 TRAM domain NQ550_RS14780 PF04055 Radical SAM superfamily NQ550_RS14790 PF02568 Thiamine biosynthesis protein (ThiI) NQ550_RS14790 PF02926 THUMP domain NQ550_RS14795 PF00266 Aminotransferase class-V NQ550_RS14800 PF04452 RNA methyltransferase NQ550_RS14815 PF00226 DnaJ domain NQ550_RS14815 PF01556 DnaJ C terminal domain NQ550_RS14815 PF00684 DnaJ central domain NQ550_RS14820 PF00012 Hsp70 protein NQ550_RS14825 PF01025 GrpE NQ550_RS14830 PF01628 HrcA protein C terminal domain NQ550_RS14835 PF00271 Helicase conserved C-terminal domain NQ550_RS14835 PF04851 Type III restriction enzyme, res subunit NQ550_RS14835 PF02151 UvrB/uvrC motif NQ550_RS14835 PF12344 Ultra-violet resistance protein B NQ550_RS14835 PF17757 UvrB interaction domain NQ550_RS14840 PF00072 Response regulator receiver domain NQ550_RS14840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS14840 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS14840 PF09308 LuxQ, periplasmic NQ550_RS14845 PF05683 Fumarase C-terminus NQ550_RS14850 PF05681 Fumarate hydratase (Fumerase) NQ550_RS14855 PF00939 Sodium:sulfate symporter transmembrane region NQ550_RS14860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS14860 PF03466 LysR substrate binding domain NQ550_RS14900 PF03358 NADPH-dependent FMN reductase NQ550_RS14910 PF02872 5'-nucleotidase, C-terminal domain NQ550_RS14910 PF00746 LPXTG cell wall anchor motif NQ550_RS14910 PF00149 Calcineurin-like phosphoesterase NQ550_RS14910 PF00565 Staphylococcal nuclease homologue NQ550_RS14915 PF02645 Uncharacterised protein, DegV family COG1307 NQ550_RS14920 PF00595 PDZ domain NQ550_RS14920 PF03572 Peptidase family S41 NQ550_RS14925 PF02687 FtsX-like permease family NQ550_RS14925 PF18075 FtsX extracellular domain NQ550_RS14930 PF00005 ABC transporter NQ550_RS14935 PF13556 PucR C-terminal helix-turn-helix domain NQ550_RS14935 PF17853 GGDEF-like domain NQ550_RS14935 PF07905 Purine catabolism regulatory protein-like family NQ550_RS14940 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NQ550_RS14940 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NQ550_RS14950 PF03169 OPT oligopeptide transporter protein NQ550_RS14955 PF06213 Cobalamin biosynthesis protein CobT NQ550_RS14955 PF11775 Cobalamin biosynthesis protein CobT VWA domain NQ550_RS14965 PF00120 Glutamine synthetase, catalytic domain NQ550_RS14965 PF18318 Glutamine synthetase C-terminal domain NQ550_RS14965 PF12437 Glutamine synthetase type III N terminal NQ550_RS14970 PF00781 Diacylglycerol kinase catalytic domain NQ550_RS14985 PF00290 Tryptophan synthase alpha chain NQ550_RS14990 PF00291 Pyridoxal-phosphate dependent enzyme NQ550_RS14995 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NQ550_RS15000 PF00218 Indole-3-glycerol phosphate synthase NQ550_RS15005 PF02885 Glycosyl transferase family, helical bundle domain NQ550_RS15005 PF00591 Glycosyl transferase family, a/b domain NQ550_RS15010 PF00591 Glycosyl transferase family, a/b domain NQ550_RS15010 PF02885 Glycosyl transferase family, helical bundle domain NQ550_RS15010 PF00117 Glutamine amidotransferase class-I NQ550_RS15015 PF00425 chorismate binding enzyme NQ550_RS15015 PF04715 Anthranilate synthase component I, N terminal region NQ550_RS15020 PF00860 Permease family NQ550_RS15055 PF00069 Protein kinase domain NQ550_RS15055 PF03793 PASTA domain NQ550_RS15060 PF03180 NLPA lipoprotein NQ550_RS15065 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS15070 PF09383 NIL domain NQ550_RS15070 PF00005 ABC transporter NQ550_RS15090 PF02769 AIR synthase related protein, C-terminal domain NQ550_RS15090 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NQ550_RS15090 PF00586 AIR synthase related protein, N-terminal domain NQ550_RS15095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS15095 PF03466 LysR substrate binding domain NQ550_RS15100 PF10609 NUBPL iron-transfer P-loop NTPase NQ550_RS15105 PF02583 Metal-sensitive transcriptional repressor NQ550_RS15115 PF00156 Phosphoribosyl transferase domain NQ550_RS15120 PF13407 Periplasmic binding protein domain NQ550_RS15130 PF07685 CobB/CobQ-like glutamine amidotransferase domain NQ550_RS15135 PF08353 Domain of unknown function (DUF1727) NQ550_RS15135 PF08245 Mur ligase middle domain NQ550_RS15145 PF01196 Ribosomal protein L17 NQ550_RS15150 PF01000 RNA polymerase Rpb3/RpoA insert domain NQ550_RS15150 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NQ550_RS15150 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NQ550_RS15155 PF00163 Ribosomal protein S4/S9 N-terminal domain NQ550_RS15155 PF01479 S4 domain NQ550_RS15160 PF00411 Ribosomal protein S11 NQ550_RS15165 PF00416 Ribosomal protein S13/S18 NQ550_RS15170 PF00444 Ribosomal protein L36 NQ550_RS15175 PF01176 Translation initiation factor 1A / IF-1 NQ550_RS15180 PF00557 Metallopeptidase family M24 NQ550_RS15185 PF05191 Adenylate kinase, active site lid NQ550_RS15190 PF00344 SecY translocase NQ550_RS15195 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NQ550_RS15200 PF00327 Ribosomal protein L30p/L7e NQ550_RS15205 PF03719 Ribosomal protein S5, C-terminal domain NQ550_RS15205 PF00333 Ribosomal protein S5, N-terminal domain NQ550_RS15210 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NQ550_RS15215 PF00347 Ribosomal protein L6 NQ550_RS15220 PF00410 Ribosomal protein S8 NQ550_RS15225 PF00253 Ribosomal protein S14p/S29e NQ550_RS15230 PF00281 Ribosomal protein L5 NQ550_RS15230 PF00673 ribosomal L5P family C-terminus NQ550_RS15235 PF00467 KOW motif NQ550_RS15235 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NQ550_RS15240 PF00238 Ribosomal protein L14p/L23e NQ550_RS15245 PF00366 Ribosomal protein S17 NQ550_RS15250 PF00831 Ribosomal L29 protein NQ550_RS15255 PF00252 Ribosomal protein L16p/L10e NQ550_RS15260 PF07650 KH domain NQ550_RS15260 PF00189 Ribosomal protein S3, C-terminal domain NQ550_RS15265 PF00237 Ribosomal protein L22p/L17e NQ550_RS15270 PF00203 Ribosomal protein S19 NQ550_RS15275 PF00181 Ribosomal Proteins L2, RNA binding domain NQ550_RS15275 PF03947 Ribosomal Proteins L2, C-terminal domain NQ550_RS15280 PF00276 Ribosomal protein L23 NQ550_RS15285 PF00573 Ribosomal protein L4/L1 family NQ550_RS15290 PF00297 Ribosomal protein L3 NQ550_RS15295 PF00338 Ribosomal protein S10p/S20e NQ550_RS15305 PF00381 PTS HPr component phosphorylation site NQ550_RS15310 PF02650 WhiA C-terminal HTH domain NQ550_RS15310 PF14527 WhiA LAGLIDADG-like domain NQ550_RS15310 PF10298 WhiA N-terminal LAGLIDADG-like domain NQ550_RS15315 PF03668 P-loop ATPase protein family NQ550_RS15320 PF01565 FAD binding domain NQ550_RS15320 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NQ550_RS15335 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NQ550_RS15340 PF07451 Stage V sporulation protein AD (SpoVAD) NQ550_RS15345 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NQ550_RS15350 PF12164 Stage V sporulation protein AA NQ550_RS15360 PF04542 Sigma-70 region 2 NQ550_RS15360 PF04539 Sigma-70 region 3 NQ550_RS15360 PF04545 Sigma-70, region 4 NQ550_RS15365 PF13581 Histidine kinase-like ATPase domain NQ550_RS15370 PF01740 STAS domain NQ550_RS15385 PF08245 Mur ligase middle domain NQ550_RS15385 PF02875 Mur ligase family, glutamate ligase domain NQ550_RS15395 PF00133 tRNA synthetases class I (I, L, M and V) NQ550_RS15395 PF08264 Anticodon-binding domain of tRNA NQ550_RS15395 PF10458 Valyl tRNA synthetase tRNA binding arm NQ550_RS15410 PF00005 ABC transporter NQ550_RS15470 PF00072 Response regulator receiver domain NQ550_RS15470 PF04397 LytTr DNA-binding domain NQ550_RS15480 PF01381 Helix-turn-helix NQ550_RS15500 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NQ550_RS15500 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NQ550_RS15530 PF01189 16S rRNA methyltransferase RsmB/F NQ550_RS15530 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF NQ550_RS15530 PF17126 RsmF rRNA methyltransferase first C-terminal domain NQ550_RS15535 PF12705 PD-(D/E)XK nuclease superfamily NQ550_RS15535 PF00580 UvrD/REP helicase N-terminal domain NQ550_RS15535 PF13361 UvrD-like helicase C-terminal domain NQ550_RS15540 PF12705 PD-(D/E)XK nuclease superfamily NQ550_RS15550 PF02540 NAD synthase NQ550_RS15550 PF00795 Carbon-nitrogen hydrolase NQ550_RS15555 PF01430 Hsp33 protein NQ550_RS15560 PF13649 Methyltransferase domain NQ550_RS15570 PF13538 UvrD-like helicase C-terminal domain NQ550_RS15575 PF00005 ABC transporter NQ550_RS15575 PF00664 ABC transporter transmembrane region NQ550_RS15580 PF00664 ABC transporter transmembrane region NQ550_RS15580 PF00005 ABC transporter NQ550_RS15590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS15590 PF03466 LysR substrate binding domain NQ550_RS15595 PF00209 Sodium:neurotransmitter symporter family NQ550_RS15615 PF17871 AAA lid domain NQ550_RS15615 PF10431 C-terminal, D2-small domain, of ClpB protein NQ550_RS15615 PF07724 AAA domain (Cdc48 subfamily) NQ550_RS15615 PF02861 Clp amino terminal domain, pathogenicity island component NQ550_RS15615 PF00004 ATPase family associated with various cellular activities (AAA) NQ550_RS15625 PF02899 Phage integrase, N-terminal SAM-like domain NQ550_RS15625 PF00589 Phage integrase family NQ550_RS15630 PF02899 Phage integrase, N-terminal SAM-like domain NQ550_RS15630 PF00589 Phage integrase family NQ550_RS15635 PF02899 Phage integrase, N-terminal SAM-like domain NQ550_RS15635 PF00589 Phage integrase family NQ550_RS15640 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ550_RS15640 PF01348 Type II intron maturase NQ550_RS15645 PF00881 Nitroreductase family NQ550_RS15650 PF01638 HxlR-like helix-turn-helix NQ550_RS15720 PF00005 ABC transporter NQ550_RS15750 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS15755 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS15765 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS15765 PF00072 Response regulator receiver domain NQ550_RS15770 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS15770 PF07689 KaiB domain NQ550_RS15770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS15805 PF01047 MarR family NQ550_RS15815 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS15815 PF00563 EAL domain NQ550_RS15815 PF03707 Bacterial signalling protein N terminal repeat NQ550_RS15825 PF00664 ABC transporter transmembrane region NQ550_RS15825 PF00005 ABC transporter NQ550_RS15830 PF00664 ABC transporter transmembrane region NQ550_RS15830 PF08021 Siderophore-interacting FAD-binding domain NQ550_RS15830 PF00005 ABC transporter NQ550_RS15830 PF04954 Siderophore-interacting protein NQ550_RS15835 PF00440 Bacterial regulatory proteins, tetR family NQ550_RS15860 PF04072 Leucine carboxyl methyltransferase NQ550_RS15875 PF00534 Glycosyl transferases group 1 NQ550_RS15875 PF08323 Starch synthase catalytic domain NQ550_RS15885 PF01554 MatE NQ550_RS15905 PF01548 Transposase NQ550_RS15905 PF02371 Transposase IS116/IS110/IS902 family NQ550_RS15910 PF00072 Response regulator receiver domain NQ550_RS15910 PF00196 Bacterial regulatory proteins, luxR family NQ550_RS15935 PF00072 Response regulator receiver domain NQ550_RS15935 PF00196 Bacterial regulatory proteins, luxR family NQ550_RS15945 PF08244 Glycosyl hydrolases family 32 C terminal NQ550_RS15945 PF00251 Glycosyl hydrolases family 32 N-terminal domain NQ550_RS15955 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS15960 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS15965 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NQ550_RS15965 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS15980 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS15985 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS15995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS15995 PF06580 Histidine kinase NQ550_RS15995 PF00672 HAMP domain NQ550_RS15995 PF02743 Cache domain NQ550_RS16000 PF00072 Response regulator receiver domain NQ550_RS16000 PF12833 Helix-turn-helix domain NQ550_RS16010 PF00563 EAL domain NQ550_RS16010 PF12792 CSS motif domain associated with EAL NQ550_RS16045 PF13193 AMP-binding enzyme C-terminal domain NQ550_RS16045 PF00501 AMP-binding enzyme NQ550_RS16050 PF00550 Phosphopantetheine attachment site NQ550_RS16065 PF00563 EAL domain NQ550_RS16065 PF08447 PAS fold NQ550_RS16065 PF08448 PAS fold NQ550_RS16065 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS16075 PF00892 EamA-like transporter family NQ550_RS16085 PF03313 Serine dehydratase alpha chain NQ550_RS16095 PF03641 Possible lysine decarboxylase NQ550_RS16100 PF00005 ABC transporter NQ550_RS16110 PF13190 PDGLE domain NQ550_RS16110 PF01891 Cobalt uptake substrate-specific transmembrane region NQ550_RS16115 PF00005 ABC transporter NQ550_RS16115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NQ550_RS16120 PF00005 ABC transporter NQ550_RS16120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NQ550_RS16125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NQ550_RS16130 PF12911 N-terminal TM domain of oligopeptide transport permease C NQ550_RS16130 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS16135 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS16140 PF03466 LysR substrate binding domain NQ550_RS16145 PF03707 Bacterial signalling protein N terminal repeat NQ550_RS16145 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS16145 PF00563 EAL domain NQ550_RS16150 PF00571 CBS domain NQ550_RS16150 PF01769 Divalent cation transporter NQ550_RS16150 PF03448 MgtE intracellular N domain NQ550_RS16155 PF03315 Serine dehydratase beta chain NQ550_RS16160 PF03313 Serine dehydratase alpha chain NQ550_RS16175 PF00075 RNase H NQ550_RS16180 PF00465 Iron-containing alcohol dehydrogenase NQ550_RS16200 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NQ550_RS16200 PF00205 Thiamine pyrophosphate enzyme, central domain NQ550_RS16200 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ550_RS16205 PF10369 Small subunit of acetolactate synthase NQ550_RS16210 PF11799 impB/mucB/samB family C-terminal domain NQ550_RS16210 PF00817 impB/mucB/samB family NQ550_RS16220 PF16875 Glycosyl hydrolase family 36 N-terminal domain NQ550_RS16220 PF16874 Glycosyl hydrolase family 36 C-terminal domain NQ550_RS16220 PF00485 Phosphoribulokinase / Uridine kinase family NQ550_RS16230 PF00248 Aldo/keto reductase family NQ550_RS16235 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS16240 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS16245 PF01547 Bacterial extracellular solute-binding protein NQ550_RS16250 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS16265 PF10114 Sensory domain found in PocR NQ550_RS16265 PF12833 Helix-turn-helix domain NQ550_RS16275 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS16280 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS16285 PF00005 ABC transporter NQ550_RS16290 PF12833 Helix-turn-helix domain NQ550_RS16290 PF00072 Response regulator receiver domain NQ550_RS16295 PF00672 HAMP domain NQ550_RS16295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS16295 PF06580 Histidine kinase NQ550_RS16295 PF02743 Cache domain NQ550_RS16300 PF11762 L-arabinose isomerase C-terminal domain NQ550_RS16300 PF02610 L-arabinose isomerase NQ550_RS16325 PF03576 Peptidase family S58 NQ550_RS16340 PF00899 ThiF family NQ550_RS16350 PF00391 PEP-utilising enzyme, mobile domain NQ550_RS16350 PF00224 Pyruvate kinase, barrel domain NQ550_RS16350 PF02887 Pyruvate kinase, alpha/beta domain NQ550_RS16360 PF02446 4-alpha-glucanotransferase NQ550_RS16365 PF00128 Alpha amylase, catalytic domain NQ550_RS16380 PF00753 Metallo-beta-lactamase superfamily NQ550_RS16380 PF00258 Flavodoxin NQ550_RS16385 PF01546 Peptidase family M20/M25/M40 NQ550_RS16385 PF07687 Peptidase dimerisation domain NQ550_RS16390 PF09382 RQC domain NQ550_RS16390 PF16124 RecQ zinc-binding NQ550_RS16390 PF00570 HRDC domain NQ550_RS16390 PF00271 Helicase conserved C-terminal domain NQ550_RS16390 PF00270 DEAD/DEAH box helicase NQ550_RS16400 PF01627 Hpt domain NQ550_RS16400 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS16400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS16400 PF00672 HAMP domain NQ550_RS16400 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NQ550_RS16400 PF00072 Response regulator receiver domain NQ550_RS16410 PF00072 Response regulator receiver domain NQ550_RS16410 PF01627 Hpt domain NQ550_RS16410 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS16410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS16420 PF01554 MatE NQ550_RS16460 PF07664 Ferrous iron transport protein B C terminus NQ550_RS16460 PF17910 FeoB cytosolic helical domain NQ550_RS16460 PF02421 Ferrous iron transport protein B NQ550_RS16460 PF07670 Nucleoside recognition NQ550_RS16475 PF02583 Metal-sensitive transcriptional repressor NQ550_RS16480 PF00403 Heavy-metal-associated domain NQ550_RS16495 PF00403 Heavy-metal-associated domain NQ550_RS16500 PF01022 Bacterial regulatory protein, arsR family NQ550_RS16505 PF01022 Bacterial regulatory protein, arsR family NQ550_RS16515 PF01638 HxlR-like helix-turn-helix NQ550_RS16535 PF12848 ABC transporter NQ550_RS16535 PF00005 ABC transporter NQ550_RS16565 PF00005 ABC transporter NQ550_RS16575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS16575 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS16575 PF09456 RcsC Alpha-Beta-Loop (ABL) NQ550_RS16575 PF00072 Response regulator receiver domain NQ550_RS16585 PF00005 ABC transporter NQ550_RS16590 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS16590 PF00072 Response regulator receiver domain NQ550_RS16605 PF07690 Major Facilitator Superfamily NQ550_RS16610 PF06445 GyrI-like small molecule binding domain NQ550_RS16610 PF12833 Helix-turn-helix domain NQ550_RS16630 PF13749 Putative ATP-dependent DNA helicase recG C-terminal NQ550_RS16630 PF00270 DEAD/DEAH box helicase NQ550_RS16630 PF17191 RecG wedge domain NQ550_RS16650 PF05958 tRNA (Uracil-5-)-methyltransferase NQ550_RS16660 PF13419 Haloacid dehalogenase-like hydrolase NQ550_RS16665 PF13361 UvrD-like helicase C-terminal domain NQ550_RS16665 PF00580 UvrD/REP helicase N-terminal domain NQ550_RS16685 PF07944 Beta-L-arabinofuranosidase, GH127 NQ550_RS16690 PF01055 Glycosyl hydrolases family 31 NQ550_RS16695 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS16700 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS16705 PF01547 Bacterial extracellular solute-binding protein NQ550_RS16710 PF00072 Response regulator receiver domain NQ550_RS16710 PF12833 Helix-turn-helix domain NQ550_RS16720 PF16874 Glycosyl hydrolase family 36 C-terminal domain NQ550_RS16720 PF16875 Glycosyl hydrolase family 36 N-terminal domain NQ550_RS16720 PF00485 Phosphoribulokinase / Uridine kinase family NQ550_RS16730 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS16735 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS16740 PF01547 Bacterial extracellular solute-binding protein NQ550_RS16745 PF12833 Helix-turn-helix domain NQ550_RS16745 PF02311 AraC-like ligand binding domain NQ550_RS16750 PF16874 Glycosyl hydrolase family 36 C-terminal domain NQ550_RS16750 PF16875 Glycosyl hydrolase family 36 N-terminal domain NQ550_RS16755 PF00248 Aldo/keto reductase family NQ550_RS16760 PF02929 Beta galactosidase small chain NQ550_RS16760 PF16353 Domain of unknown function(DUF4981) NQ550_RS16760 PF00703 Glycosyl hydrolases family 2 NQ550_RS16760 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NQ550_RS16760 PF02837 Glycosyl hydrolases family 2, sugar binding domain NQ550_RS16765 PF01371 Trp repressor protein NQ550_RS16775 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS16780 PF00005 ABC transporter NQ550_RS16785 PF13407 Periplasmic binding protein domain NQ550_RS16790 PF13407 Periplasmic binding protein domain NQ550_RS16795 PF00072 Response regulator receiver domain NQ550_RS16795 PF12833 Helix-turn-helix domain NQ550_RS16800 PF00672 HAMP domain NQ550_RS16800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS16800 PF06580 Histidine kinase NQ550_RS16800 PF02743 Cache domain NQ550_RS16810 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain NQ550_RS16810 PF01522 Polysaccharide deacetylase NQ550_RS16820 PF16199 Radical_SAM C-terminal domain NQ550_RS16820 PF04055 Radical SAM superfamily NQ550_RS16830 PF12002 MgsA AAA+ ATPase C terminal NQ550_RS16830 PF16193 AAA C-terminal domain NQ550_RS16830 PF05496 Holliday junction DNA helicase RuvB P-loop domain NQ550_RS16865 PF12161 HsdM N-terminal domain NQ550_RS16865 PF02384 N-6 DNA Methylase NQ550_RS16870 PF01420 Type I restriction modification DNA specificity domain NQ550_RS16875 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NQ550_RS16875 PF00271 Helicase conserved C-terminal domain NQ550_RS16875 PF08463 EcoEI R protein C-terminal NQ550_RS16875 PF04851 Type III restriction enzyme, res subunit NQ550_RS16885 PF00005 ABC transporter NQ550_RS16890 PF00005 ABC transporter NQ550_RS16890 PF12399 Branched-chain amino acid ATP-binding cassette transporter NQ550_RS16895 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS16895 PF11862 Domain of unknown function (DUF3382) NQ550_RS16900 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS16905 PF13458 Periplasmic binding protein NQ550_RS16910 PF00453 Ribosomal protein L20 NQ550_RS16915 PF01632 Ribosomal protein L35 NQ550_RS16920 PF05198 Translation initiation factor IF-3, N-terminal domain NQ550_RS16920 PF00707 Translation initiation factor IF-3, C-terminal domain NQ550_RS16930 PF12327 FtsZ family, C-terminal domain NQ550_RS16930 PF00091 Tubulin/FtsZ family, GTPase domain NQ550_RS16940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NQ550_RS16945 PF01098 Cell cycle protein NQ550_RS16950 PF08245 Mur ligase middle domain NQ550_RS16950 PF02875 Mur ligase family, glutamate ligase domain NQ550_RS16955 PF00953 Glycosyl transferase family 4 NQ550_RS16960 PF00905 Penicillin binding protein transpeptidase domain NQ550_RS16960 PF03717 Penicillin-binding Protein dimerisation domain NQ550_RS16960 PF03793 PASTA domain NQ550_RS16965 PF00905 Penicillin binding protein transpeptidase domain NQ550_RS16965 PF03717 Penicillin-binding Protein dimerisation domain NQ550_RS16965 PF03793 PASTA domain NQ550_RS16975 PF01795 MraW methylase family NQ550_RS16980 PF02381 MraZ protein, putative antitoxin-like NQ550_RS16985 PF01790 Prolipoprotein diacylglyceryl transferase NQ550_RS16990 PF06071 Protein of unknown function (DUF933) NQ550_RS16990 PF01926 50S ribosome-binding GTPase NQ550_RS17005 PF01915 Glycosyl hydrolase family 3 C-terminal domain NQ550_RS17005 PF00933 Glycosyl hydrolase family 3 N terminal domain NQ550_RS17005 PF14310 Fibronectin type III-like domain NQ550_RS17010 PF14310 Fibronectin type III-like domain NQ550_RS17010 PF00933 Glycosyl hydrolase family 3 N terminal domain NQ550_RS17010 PF01915 Glycosyl hydrolase family 3 C-terminal domain NQ550_RS17020 PF00072 Response regulator receiver domain NQ550_RS17020 PF04397 LytTr DNA-binding domain NQ550_RS17030 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NQ550_RS17045 PF02082 Transcriptional regulator NQ550_RS17050 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain NQ550_RS17050 PF04263 Thiamin pyrophosphokinase, catalytic domain NQ550_RS17055 PF00834 Ribulose-phosphate 3 epimerase family NQ550_RS17060 PF03193 RsgA GTPase NQ550_RS17060 PF16745 RsgA N-terminal domain NQ550_RS17065 PF00069 Protein kinase domain NQ550_RS17065 PF03793 PASTA domain NQ550_RS17075 PF04055 Radical SAM superfamily NQ550_RS17080 PF01189 16S rRNA methyltransferase RsmB/F NQ550_RS17080 PF01029 NusB family NQ550_RS17085 PF04298 Putative neutral zinc metallopeptidase NQ550_RS17090 PF00551 Formyl transferase NQ550_RS17090 PF02911 Formyl transferase, C-terminal domain NQ550_RS17095 PF01327 Polypeptide deformylase NQ550_RS17100 PF00271 Helicase conserved C-terminal domain NQ550_RS17100 PF17764 3′ DNA-binding domain (3′BD) NQ550_RS17100 PF18074 Primosomal protein N C-terminal domain NQ550_RS17100 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NQ550_RS17100 PF04851 Type III restriction enzyme, res subunit NQ550_RS17105 PF02875 Mur ligase family, glutamate ligase domain NQ550_RS17105 PF01225 Mur ligase family, catalytic domain NQ550_RS17105 PF08245 Mur ligase middle domain NQ550_RS17115 PF00696 Amino acid kinase family NQ550_RS17120 PF03477 ATP cone domain NQ550_RS17120 PF13597 Anaerobic ribonucleoside-triphosphate reductase NQ550_RS17135 PF03590 Aspartate-ammonia ligase NQ550_RS17145 PF01758 Sodium Bile acid symporter family NQ550_RS17150 PF00005 ABC transporter NQ550_RS17155 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS17160 PF00497 Bacterial extracellular solute-binding proteins, family 3 NQ550_RS17165 PF01678 Diaminopimelate epimerase NQ550_RS17195 PF01053 Cys/Met metabolism PLP-dependent enzyme NQ550_RS17205 PF00291 Pyridoxal-phosphate dependent enzyme NQ550_RS17210 PF02082 Transcriptional regulator NQ550_RS17220 PF03477 ATP cone domain NQ550_RS17220 PF13597 Anaerobic ribonucleoside-triphosphate reductase NQ550_RS17225 PF16360 GTP-binding GTPase Middle Region NQ550_RS17225 PF13167 GTP-binding GTPase N-terminal NQ550_RS17225 PF01926 50S ribosome-binding GTPase NQ550_RS17235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NQ550_RS17235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NQ550_RS17235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NQ550_RS17235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NQ550_RS17250 PF03462 PCRF domain NQ550_RS17250 PF00472 RF-1 domain NQ550_RS17255 PF05175 Methyltransferase small domain NQ550_RS17255 PF17827 PrmC N-terminal domain NQ550_RS17260 PF07136 Protein of unknown function (DUF1385) NQ550_RS17265 PF01197 Ribosomal protein L31 NQ550_RS17270 PF07497 Rho termination factor, RNA-binding domain NQ550_RS17270 PF07498 Rho termination factor, N-terminal domain NQ550_RS17270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ550_RS17285 PF00482 Type II secretion system (T2SS), protein F NQ550_RS17310 PF00437 Type II/IV secretion system protein NQ550_RS17320 PF00155 Aminotransferase class I and II NQ550_RS17325 PF02824 TGS domain NQ550_RS17325 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NQ550_RS17325 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NQ550_RS17325 PF03129 Anticodon binding domain NQ550_RS17330 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NQ550_RS17330 PF06165 Glycosyltransferase family 36 NQ550_RS17335 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS17345 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS17350 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS17360 PF00733 Asparagine synthase NQ550_RS17360 PF13537 Glutamine amidotransferase domain NQ550_RS17370 PF00733 Asparagine synthase NQ550_RS17370 PF13537 Glutamine amidotransferase domain NQ550_RS17385 PF03275 UDP-galactopyranose mutase NQ550_RS17400 PF00535 Glycosyl transferase family 2 NQ550_RS17415 PF00535 Glycosyl transferase family 2 NQ550_RS17425 PF01501 Glycosyl transferase family 8 NQ550_RS17425 PF00535 Glycosyl transferase family 2 NQ550_RS17430 PF02397 Bacterial sugar transferase NQ550_RS17435 PF17836 PglD N-terminal domain NQ550_RS17435 PF00132 Bacterial transferase hexapeptide (six repeats) NQ550_RS17445 PF02719 Polysaccharide biosynthesis protein NQ550_RS17455 PF00589 Phage integrase family NQ550_RS17455 PF14659 Phage integrase, N-terminal SAM-like domain NQ550_RS17470 PF02574 Homocysteine S-methyltransferase NQ550_RS17470 PF02219 Methylenetetrahydrofolate reductase NQ550_RS17480 PF13375 RnfC Barrel sandwich hybrid domain NQ550_RS17480 PF10531 SLBB domain NQ550_RS17480 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NQ550_RS17480 PF13237 4Fe-4S dicluster domain NQ550_RS17490 PF09308 LuxQ, periplasmic NQ550_RS17490 PF00072 Response regulator receiver domain NQ550_RS17490 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS17490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS17500 PF03749 Sugar fermentation stimulation protein RE domain NQ550_RS17500 PF17746 SfsA N-terminal OB domain NQ550_RS17570 PF01555 DNA methylase NQ550_RS17595 PF01751 Toprim domain NQ550_RS17595 PF01131 DNA topoisomerase NQ550_RS17600 PF18840 Large polyvalent protein associated domain 25 NQ550_RS17625 PF03432 Relaxase/Mobilisation nuclease domain NQ550_RS17645 PF04055 Radical SAM superfamily NQ550_RS17705 PF00392 Bacterial regulatory proteins, gntR family NQ550_RS17710 PF00005 ABC transporter NQ550_RS17725 PF00082 Subtilase family NQ550_RS17725 PF13860 FlgD Ig-like domain NQ550_RS17725 PF02225 PA domain NQ550_RS17725 PF05922 Peptidase inhibitor I9 NQ550_RS17735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS17735 PF03466 LysR substrate binding domain NQ550_RS17745 PF02554 Carbon starvation protein CstA NQ550_RS17745 PF13722 5TM C-terminal transporter carbon starvation CstA NQ550_RS17765 PF12323 Helix-turn-helix domain NQ550_RS17765 PF07282 Putative transposase DNA-binding domain NQ550_RS17765 PF01385 Probable transposase NQ550_RS17780 PF04198 Putative sugar-binding domain NQ550_RS17785 PF00596 Class II Aldolase and Adducin N-terminal domain NQ550_RS17795 PF03611 PTS system sugar-specific permease component NQ550_RS17800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NQ550_RS17800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NQ550_RS17810 PF01261 Xylose isomerase-like TIM barrel NQ550_RS17820 PF02535 ZIP Zinc transporter NQ550_RS17830 PF02632 BioY family NQ550_RS17835 PF00072 Response regulator receiver domain NQ550_RS17835 PF12833 Helix-turn-helix domain NQ550_RS17840 PF07694 5TMR of 5TMR-LYT NQ550_RS17840 PF06580 Histidine kinase NQ550_RS17845 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS17850 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS17860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NQ550_RS17860 PF10518 TAT (twin-arginine translocation) pathway signal sequence NQ550_RS17875 PF00588 SpoU rRNA Methylase family NQ550_RS17890 PF08240 Alcohol dehydrogenase GroES-like domain NQ550_RS17890 PF00107 Zinc-binding dehydrogenase NQ550_RS17895 PF00480 ROK family NQ550_RS17900 PF01554 MatE NQ550_RS17915 PF14310 Fibronectin type III-like domain NQ550_RS17915 PF00933 Glycosyl hydrolase family 3 N terminal domain NQ550_RS17915 PF01915 Glycosyl hydrolase family 3 C-terminal domain NQ550_RS17935 PF12822 ECF transporter, substrate-specific component NQ550_RS17965 PF02899 Phage integrase, N-terminal SAM-like domain NQ550_RS17965 PF00589 Phage integrase family NQ550_RS17975 PF00589 Phage integrase family NQ550_RS17975 PF14659 Phage integrase, N-terminal SAM-like domain NQ550_RS18015 PF00266 Aminotransferase class-V NQ550_RS18020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS18020 PF03466 LysR substrate binding domain NQ550_RS18025 PF00563 EAL domain NQ550_RS18025 PF01590 GAF domain NQ550_RS18025 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS18025 PF00360 Phytochrome region NQ550_RS18035 PF00005 ABC transporter NQ550_RS18040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NQ550_RS18060 PF03932 CutC family NQ550_RS18065 PF08220 DeoR-like helix-turn-helix domain NQ550_RS18065 PF00455 DeoR C terminal sensor domain NQ550_RS18070 PF00005 ABC transporter NQ550_RS18070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NQ550_RS18075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NQ550_RS18075 PF00005 ABC transporter NQ550_RS18080 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18080 PF12911 N-terminal TM domain of oligopeptide transport permease C NQ550_RS18085 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NQ550_RS18095 PF00924 Mechanosensitive ion channel NQ550_RS18095 PF05552 Conserved TM helix NQ550_RS18105 PF00381 PTS HPr component phosphorylation site NQ550_RS18115 PF17674 HHH domain NQ550_RS18115 PF00575 S1 RNA binding domain NQ550_RS18115 PF09371 Tex-like protein N-terminal domain NQ550_RS18115 PF16921 Tex protein YqgF-like domain NQ550_RS18120 PF04389 Peptidase family M28 NQ550_RS18130 PF00696 Amino acid kinase family NQ550_RS18130 PF13840 ACT domain NQ550_RS18135 PF03447 Homoserine dehydrogenase, NAD binding domain NQ550_RS18135 PF01842 ACT domain NQ550_RS18135 PF00742 Homoserine dehydrogenase NQ550_RS18150 PF01678 Diaminopimelate epimerase NQ550_RS18155 PF12833 Helix-turn-helix domain NQ550_RS18160 PF00209 Sodium:neurotransmitter symporter family NQ550_RS18165 PF07516 SecA Wing and Scaffold domain NQ550_RS18165 PF01043 SecA preprotein cross-linking domain NQ550_RS18165 PF07517 SecA DEAD-like domain NQ550_RS18165 PF02810 SEC-C motif NQ550_RS18170 PF02446 4-alpha-glucanotransferase NQ550_RS18175 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NQ550_RS18175 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NQ550_RS18190 PF07943 Penicillin-binding protein 5, C-terminal domain NQ550_RS18190 PF00768 D-alanyl-D-alanine carboxypeptidase NQ550_RS18195 PF01113 Dihydrodipicolinate reductase, N-terminus NQ550_RS18195 PF05173 Dihydrodipicolinate reductase, C-terminus NQ550_RS18200 PF00701 Dihydrodipicolinate synthetase family NQ550_RS18215 PF00679 Elongation factor G C-terminus NQ550_RS18215 PF03144 Elongation factor Tu domain 2 NQ550_RS18215 PF00009 Elongation factor Tu GTP binding domain NQ550_RS18215 PF14492 Elongation Factor G, domain II NQ550_RS18220 PF00465 Iron-containing alcohol dehydrogenase NQ550_RS18220 PF00171 Aldehyde dehydrogenase family NQ550_RS18225 PF00596 Class II Aldolase and Adducin N-terminal domain NQ550_RS18230 PF13091 PLD-like domain NQ550_RS18255 PF08125 Mannitol dehydrogenase C-terminal domain NQ550_RS18255 PF01232 Mannitol dehydrogenase Rossmann domain NQ550_RS18260 PF00480 ROK family NQ550_RS18265 PF02903 Alpha amylase, N-terminal ig-like domain NQ550_RS18265 PF00128 Alpha amylase, catalytic domain NQ550_RS18265 PF16657 Maltogenic Amylase, C-terminal domain NQ550_RS18275 PF02690 Na+/Pi-cotransporter NQ550_RS18280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NQ550_RS18280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NQ550_RS18285 PF00155 Aminotransferase class I and II NQ550_RS18295 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NQ550_RS18295 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NQ550_RS18300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ550_RS18300 PF02874 ATP synthase alpha/beta family, beta-barrel domain NQ550_RS18305 PF00231 ATP synthase NQ550_RS18310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ550_RS18310 PF00306 ATP synthase alpha/beta chain, C terminal domain NQ550_RS18310 PF02874 ATP synthase alpha/beta family, beta-barrel domain NQ550_RS18315 PF00213 ATP synthase delta (OSCP) subunit NQ550_RS18320 PF00430 ATP synthase B/B' CF(0) NQ550_RS18325 PF00137 ATP synthase subunit C NQ550_RS18330 PF00119 ATP synthase A chain NQ550_RS18350 PF01479 S4 domain NQ550_RS18350 PF00849 RNA pseudouridylate synthase NQ550_RS18355 PF00694 Aconitase C-terminal domain NQ550_RS18355 PF00330 Aconitase family (aconitate hydratase) NQ550_RS18370 PF08245 Mur ligase middle domain NQ550_RS18370 PF02875 Mur ligase family, glutamate ligase domain NQ550_RS18370 PF01225 Mur ligase family, catalytic domain NQ550_RS18375 PF01820 D-ala D-ala ligase N-terminus NQ550_RS18375 PF07478 D-ala D-ala ligase C-terminus NQ550_RS18385 PF12897 Alanine-glyoxylate amino-transferase NQ550_RS18410 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NQ550_RS18410 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NQ550_RS18415 PF10672 S-adenosylmethionine-dependent methyltransferase NQ550_RS18415 PF01170 Putative RNA methylase family UPF0020 NQ550_RS18415 PF02926 THUMP domain NQ550_RS18420 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS18425 PF02653 Branched-chain amino acid transport system / permease component NQ550_RS18430 PF00005 ABC transporter NQ550_RS18435 PF13407 Periplasmic binding protein domain NQ550_RS18440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS18440 PF02743 Cache domain NQ550_RS18440 PF00672 HAMP domain NQ550_RS18440 PF06580 Histidine kinase NQ550_RS18445 PF12833 Helix-turn-helix domain NQ550_RS18445 PF00072 Response regulator receiver domain NQ550_RS18465 PF14310 Fibronectin type III-like domain NQ550_RS18465 PF00933 Glycosyl hydrolase family 3 N terminal domain NQ550_RS18465 PF01915 Glycosyl hydrolase family 3 C-terminal domain NQ550_RS18470 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18475 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18480 PF12010 Domain of unknown function (DUF3502) NQ550_RS18490 PF00072 Response regulator receiver domain NQ550_RS18490 PF12833 Helix-turn-helix domain NQ550_RS18490 PF00072 Response regulator receiver domain NQ550_RS18490 PF12833 Helix-turn-helix domain NQ550_RS18495 PF14827 Double sensory domain of two-component sensor kinase NQ550_RS18495 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS18495 PF13426 PAS domain NQ550_RS18495 PF00672 HAMP domain NQ550_RS18495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS18500 PF01895 PhoU domain NQ550_RS18505 PF00005 ABC transporter NQ550_RS18510 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18515 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18520 PF12849 PBP superfamily domain NQ550_RS18535 PF03960 ArsC family NQ550_RS18540 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS18540 PF00072 Response regulator receiver domain NQ550_RS18545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS18545 PF07689 KaiB domain NQ550_RS18545 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS18550 PF00005 ABC transporter NQ550_RS18560 PF01774 UreD urease accessory protein NQ550_RS18565 PF02492 CobW/HypB/UreG, nucleotide-binding domain NQ550_RS18570 PF01730 UreF NQ550_RS18575 PF02814 UreE urease accessory protein, N-terminal domain NQ550_RS18575 PF05194 UreE urease accessory protein, C-terminal domain NQ550_RS18580 PF02293 AmiS/UreI family transporter NQ550_RS18585 PF00449 Urease alpha-subunit, N-terminal domain NQ550_RS18585 PF01979 Amidohydrolase family NQ550_RS18590 PF00699 Urease beta subunit NQ550_RS18590 PF00547 Urease, gamma subunit NQ550_RS18595 PF00547 Urease, gamma subunit NQ550_RS18600 PF00005 ABC transporter NQ550_RS18605 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18610 PF01261 Xylose isomerase-like TIM barrel NQ550_RS18615 PF13580 SIS domain NQ550_RS18620 PF00294 pfkB family carbohydrate kinase NQ550_RS18625 PF01380 SIS domain NQ550_RS18630 PF03606 C4-dicarboxylate anaerobic carrier NQ550_RS18635 PF00449 Urease alpha-subunit, N-terminal domain NQ550_RS18635 PF01979 Amidohydrolase family NQ550_RS18640 PF07702 UTRA domain NQ550_RS18640 PF00392 Bacterial regulatory proteins, gntR family NQ550_RS18670 PF01554 MatE NQ550_RS18685 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18690 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18700 PF08244 Glycosyl hydrolases family 32 C terminal NQ550_RS18700 PF00251 Glycosyl hydrolases family 32 N-terminal domain NQ550_RS18705 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS18720 PF01554 MatE NQ550_RS18730 PF01906 Putative heavy-metal-binding NQ550_RS18740 PF03553 Na+/H+ antiporter family NQ550_RS18745 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NQ550_RS18745 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NQ550_RS18755 PF04542 Sigma-70 region 2 NQ550_RS18755 PF08281 Sigma-70, region 4 NQ550_RS18765 PF00232 Glycosyl hydrolase family 1 NQ550_RS18770 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQ550_RS18770 PF02378 Phosphotransferase system, EIIC NQ550_RS18770 PF00367 phosphotransferase system, EIIB NQ550_RS18780 PF00072 Response regulator receiver domain NQ550_RS18780 PF01627 Hpt domain NQ550_RS18780 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS18780 PF00672 HAMP domain NQ550_RS18780 PF17149 Periplasmic sensor domain found in signal transduction proteins NQ550_RS18780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS18815 PF01548 Transposase NQ550_RS18815 PF02371 Transposase IS116/IS110/IS902 family NQ550_RS18820 PF01547 Bacterial extracellular solute-binding protein NQ550_RS18825 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18830 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS18845 PF08279 HTH domain NQ550_RS18845 PF00072 Response regulator receiver domain NQ550_RS18860 PF01699 Sodium/calcium exchanger protein NQ550_RS18865 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NQ550_RS18870 PF00293 NUDIX domain NQ550_RS18885 PF00005 ABC transporter NQ550_RS18890 PF00376 MerR family regulatory protein NQ550_RS18890 PF09278 MerR, DNA binding NQ550_RS18895 PF01381 Helix-turn-helix NQ550_RS18925 PF00009 Elongation factor Tu GTP binding domain NQ550_RS18925 PF03144 Elongation factor Tu domain 2 NQ550_RS18925 PF03143 Elongation factor Tu C-terminal domain NQ550_RS18930 PF03144 Elongation factor Tu domain 2 NQ550_RS18930 PF00009 Elongation factor Tu GTP binding domain NQ550_RS18930 PF03764 Elongation factor G, domain IV NQ550_RS18930 PF14492 Elongation Factor G, domain II NQ550_RS18930 PF00679 Elongation factor G C-terminus NQ550_RS18935 PF00177 Ribosomal protein S7p/S5e NQ550_RS18940 PF00164 Ribosomal protein S12/S23 NQ550_RS18975 PF03793 PASTA domain NQ550_RS18975 PF00069 Protein kinase domain NQ550_RS18980 PF04983 RNA polymerase Rpb1, domain 3 NQ550_RS18980 PF04998 RNA polymerase Rpb1, domain 5 NQ550_RS18980 PF00623 RNA polymerase Rpb1, domain 2 NQ550_RS18980 PF05000 RNA polymerase Rpb1, domain 4 NQ550_RS18980 PF04997 RNA polymerase Rpb1, domain 1 NQ550_RS18985 PF10385 RNA polymerase beta subunit external 1 domain NQ550_RS18985 PF04563 RNA polymerase beta subunit NQ550_RS18985 PF04561 RNA polymerase Rpb2, domain 2 NQ550_RS18985 PF04565 RNA polymerase Rpb2, domain 3 NQ550_RS18985 PF00562 RNA polymerase Rpb2, domain 6 NQ550_RS18985 PF04560 RNA polymerase Rpb2, domain 7 NQ550_RS18995 PF00542 Ribosomal protein L7/L12 C-terminal domain NQ550_RS18995 PF16320 Ribosomal protein L7/L12 dimerisation domain NQ550_RS19000 PF00466 Ribosomal protein L10 NQ550_RS19015 PF02424 ApbE family NQ550_RS19050 PF00009 Elongation factor Tu GTP binding domain NQ550_RS19055 PF01507 Phosphoadenosine phosphosulfate reductase family NQ550_RS19065 PF00890 FAD binding domain NQ550_RS19065 PF02910 Fumarate reductase flavoprotein C-term NQ550_RS19070 PF00005 ABC transporter NQ550_RS19070 PF03459 TOBE domain NQ550_RS19075 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS19080 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS19100 PF00936 BMC domain NQ550_RS19115 PF08544 GHMP kinases C terminal NQ550_RS19115 PF10509 Galactokinase galactose-binding signature NQ550_RS19115 PF00288 GHMP kinases N terminal domain NQ550_RS19125 PF03466 LysR substrate binding domain NQ550_RS19125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS19130 PF02595 Glycerate kinase family NQ550_RS19140 PF00375 Sodium:dicarboxylate symporter family NQ550_RS19145 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS19150 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS19155 PF01547 Bacterial extracellular solute-binding protein NQ550_RS19165 PF00072 Response regulator receiver domain NQ550_RS19165 PF12833 Helix-turn-helix domain NQ550_RS19170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS19170 PF00672 HAMP domain NQ550_RS19170 PF02743 Cache domain NQ550_RS19170 PF06580 Histidine kinase NQ550_RS19190 PF00375 Sodium:dicarboxylate symporter family NQ550_RS19200 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS19205 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS19215 PF00072 Response regulator receiver domain NQ550_RS19215 PF12833 Helix-turn-helix domain NQ550_RS19220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS19220 PF00672 HAMP domain NQ550_RS19220 PF02743 Cache domain NQ550_RS19220 PF06580 Histidine kinase NQ550_RS19235 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NQ550_RS19240 PF07683 Cobalamin synthesis protein cobW C-terminal domain NQ550_RS19240 PF02492 CobW/HypB/UreG, nucleotide-binding domain NQ550_RS19245 PF00005 ABC transporter NQ550_RS19245 PF00664 ABC transporter transmembrane region NQ550_RS19250 PF00664 ABC transporter transmembrane region NQ550_RS19250 PF00005 ABC transporter NQ550_RS19265 PF05343 M42 glutamyl aminopeptidase NQ550_RS19275 PF00293 NUDIX domain NQ550_RS19280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NQ550_RS19285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NQ550_RS19285 PF00005 ABC transporter NQ550_RS19290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NQ550_RS19290 PF00005 ABC transporter NQ550_RS19295 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS19295 PF12911 N-terminal TM domain of oligopeptide transport permease C NQ550_RS19300 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS19305 PF00342 Phosphoglucose isomerase NQ550_RS19310 PF00563 EAL domain NQ550_RS19310 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS19310 PF03707 Bacterial signalling protein N terminal repeat NQ550_RS19320 PF00899 ThiF family NQ550_RS19330 PF00085 Thioredoxin NQ550_RS19335 PF01206 Sulfurtransferase TusA NQ550_RS19340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NQ550_RS19340 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NQ550_RS19340 PF13187 4Fe-4S dicluster domain NQ550_RS19345 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ550_RS19355 PF03707 Bacterial signalling protein N terminal repeat NQ550_RS19355 PF00990 Diguanylate cyclase, GGDEF domain NQ550_RS19355 PF00563 EAL domain NQ550_RS19365 PF02001 Protein of unknown function DUF134 NQ550_RS19370 PF13545 Crp-like helix-turn-helix domain NQ550_RS19370 PF00027 Cyclic nucleotide-binding domain NQ550_RS19375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NQ550_RS19375 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ550_RS19380 PF00085 Thioredoxin NQ550_RS19410 PF10410 DnaB-helicase binding domain of primase NQ550_RS19410 PF08275 DNA primase catalytic core, N-terminal domain NQ550_RS19410 PF01807 CHC2 zinc finger NQ550_RS19415 PF17841 BID domain of Bartonella effector protein (Bep) NQ550_RS19415 PF03389 MobA/MobL family NQ550_RS19415 PF01443 Viral (Superfamily 1) RNA helicase NQ550_RS19440 PF00005 ABC transporter NQ550_RS19465 PF00196 Bacterial regulatory proteins, luxR family NQ550_RS19490 PF01381 Helix-turn-helix NQ550_RS19500 PF10086 YhfC intramembrane metalloprotease NQ550_RS19545 PF00271 Helicase conserved C-terminal domain NQ550_RS19580 PF18766 SWI2/SNF2 ATPase NQ550_RS19580 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NQ550_RS19580 PF11867 Domain of unknown function (DUF3387) NQ550_RS19590 PF02384 N-6 DNA Methylase NQ550_RS19645 PF01381 Helix-turn-helix NQ550_RS19665 PF00005 ABC transporter NQ550_RS19685 PF00072 Response regulator receiver domain NQ550_RS19685 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS19690 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS19690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS19695 PF02195 ParB-like nuclease domain NQ550_RS19695 PF17762 HTH domain found in ParB protein NQ550_RS19725 PF02486 Replication initiation factor NQ550_RS19725 PF18106 Rolling Circle replication initiation protein N-terminal domain NQ550_RS19765 PF00877 NlpC/P60 family NQ550_RS19850 PF13276 HTH-like domain NQ550_RS19850 PF00665 Integrase core domain NQ550_RS19850 PF13333 Integrase core domain NQ550_RS19890 PF00072 Response regulator receiver domain NQ550_RS19890 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS19900 PF00005 ABC transporter NQ550_RS19905 PF01381 Helix-turn-helix NQ550_RS19910 PF00072 Response regulator receiver domain NQ550_RS19910 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS19935 PF00005 ABC transporter NQ550_RS19940 PF00392 Bacterial regulatory proteins, gntR family NQ550_RS19945 PF03432 Relaxase/Mobilisation nuclease domain NQ550_RS20005 PF08275 DNA primase catalytic core, N-terminal domain NQ550_RS20005 PF01807 CHC2 zinc finger NQ550_RS20010 PF00589 Phage integrase family NQ550_RS20010 PF14659 Phage integrase, N-terminal SAM-like domain NQ550_RS20035 PF03389 MobA/MobL family NQ550_RS20035 PF01443 Viral (Superfamily 1) RNA helicase NQ550_RS20035 PF17841 BID domain of Bartonella effector protein (Bep) NQ550_RS20050 PF00005 ABC transporter NQ550_RS20055 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS20055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS20055 PF07689 KaiB domain NQ550_RS20060 PF00072 Response regulator receiver domain NQ550_RS20060 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS20125 PF13614 AAA domain NQ550_RS20130 PF17762 HTH domain found in ParB protein NQ550_RS20130 PF02195 ParB-like nuclease domain NQ550_RS20150 PF10548 P22AR C-terminal domain NQ550_RS20150 PF02498 BRO family, N-terminal domain NQ550_RS20170 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ550_RS20170 PF01348 Type II intron maturase NQ550_RS20230 PF01131 DNA topoisomerase NQ550_RS20230 PF01751 Toprim domain NQ550_RS20240 PF13662 Toprim domain NQ550_RS20240 PF08275 DNA primase catalytic core, N-terminal domain NQ550_RS20240 PF01807 CHC2 zinc finger NQ550_RS20240 PF16730 DnaG-primase C-terminal, helicase-binding domain NQ550_RS20260 PF01624 MutS domain I NQ550_RS20260 PF05188 MutS domain II NQ550_RS20260 PF05192 MutS domain III NQ550_RS20260 PF00488 MutS domain V NQ550_RS20260 PF05190 MutS family domain IV NQ550_RS20285 PF06250 YhcG PDDEXK nuclease domain NQ550_RS20285 PF17761 DUF1016 N-terminal domain NQ550_RS20295 PF03432 Relaxase/Mobilisation nuclease domain NQ550_RS20310 PF01627 Hpt domain NQ550_RS20310 PF00072 Response regulator receiver domain NQ550_RS20310 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS20315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS20315 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS20320 PF00005 ABC transporter NQ550_RS20375 PF06908 YspA SLOG family NQ550_RS20385 PF00692 dUTPase NQ550_RS20415 PF04203 Sortase domain NQ550_RS20430 PF01551 Peptidase family M23 NQ550_RS20430 PF01476 LysM domain NQ550_RS20430 PF08525 Opacity-associated protein A N-terminal motif NQ550_RS20485 PF10410 DnaB-helicase binding domain of primase NQ550_RS20485 PF08275 DNA primase catalytic core, N-terminal domain NQ550_RS20485 PF01807 CHC2 zinc finger NQ550_RS20490 PF03389 MobA/MobL family NQ550_RS20490 PF17841 BID domain of Bartonella effector protein (Bep) NQ550_RS20490 PF01443 Viral (Superfamily 1) RNA helicase NQ550_RS20500 PF01381 Helix-turn-helix NQ550_RS20550 PF01695 IstB-like ATP binding protein NQ550_RS20615 PF01695 IstB-like ATP binding protein NQ550_RS20640 PF03389 MobA/MobL family NQ550_RS20640 PF01443 Viral (Superfamily 1) RNA helicase NQ550_RS20640 PF17841 BID domain of Bartonella effector protein (Bep) NQ550_RS20675 PF13732 Domain of unknown function (DUF4162) NQ550_RS20675 PF00005 ABC transporter NQ550_RS20685 PF08281 Sigma-70, region 4 NQ550_RS20685 PF04542 Sigma-70 region 2 NQ550_RS20715 PF01348 Type II intron maturase NQ550_RS20715 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ550_RS20835 PF14659 Phage integrase, N-terminal SAM-like domain NQ550_RS20835 PF00589 Phage integrase family NQ550_RS20850 PF02540 NAD synthase NQ550_RS20850 PF00117 Glutamine amidotransferase class-I NQ550_RS20850 PF00958 GMP synthase C terminal domain NQ550_RS20855 PF16338 Domain of unknown function (DUF4968) NQ550_RS20855 PF01055 Glycosyl hydrolases family 31 NQ550_RS20855 PF13802 Galactose mutarotase-like NQ550_RS20855 PF17137 Domain of unknown function (DUF5110) NQ550_RS20860 PF13091 PLD-like domain NQ550_RS20870 PF02390 Putative methyltransferase NQ550_RS20885 PF01496 V-type ATPase 116kDa subunit family NQ550_RS20905 PF16886 ATPsynthase alpha/beta subunit N-term extension NQ550_RS20905 PF02874 ATP synthase alpha/beta family, beta-barrel domain NQ550_RS20905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ550_RS20910 PF02874 ATP synthase alpha/beta family, beta-barrel domain NQ550_RS20910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ550_RS20915 PF01813 ATP synthase subunit D NQ550_RS20920 PF00877 NlpC/P60 family NQ550_RS20920 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain NQ550_RS20940 PF00689 Cation transporting ATPase, C-terminus NQ550_RS20940 PF00690 Cation transporter/ATPase, N-terminus NQ550_RS20945 PF02342 TerD domain NQ550_RS20950 PF02342 TerD domain NQ550_RS20955 PF02342 TerD domain NQ550_RS20960 PF05816 Toxic anion resistance protein (TelA) NQ550_RS20965 PF14266 Putative component of 'biosynthetic module' NQ550_RS20970 PF03328 HpcH/HpaI aldolase/citrate lyase family NQ550_RS20985 PF01047 MarR family NQ550_RS20990 PF09587 Bacterial capsule synthesis protein PGA_cap NQ550_RS20995 PF01026 TatD related DNase NQ550_RS21005 PF00994 Probable molybdopterin binding domain NQ550_RS21010 PF01967 MoaC family NQ550_RS21015 PF09334 tRNA synthetases class I (M) NQ550_RS21015 PF01588 Putative tRNA binding domain NQ550_RS21020 PF13186 Iron-sulfur cluster-binding domain NQ550_RS21020 PF04055 Radical SAM superfamily NQ550_RS21025 PF03466 LysR substrate binding domain NQ550_RS21025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ550_RS21030 PF02417 Chromate transporter NQ550_RS21035 PF02417 Chromate transporter NQ550_RS21040 PF12833 Helix-turn-helix domain NQ550_RS21040 PF02311 AraC-like ligand binding domain NQ550_RS21045 PF16347 Domain of unknown function (DUF4976) NQ550_RS21045 PF00884 Sulfatase NQ550_RS21060 PF00589 Phage integrase family NQ550_RS21060 PF02899 Phage integrase, N-terminal SAM-like domain NQ550_RS21080 PF02915 Rubrerythrin NQ550_RS21090 PF07943 Penicillin-binding protein 5, C-terminal domain NQ550_RS21090 PF00768 D-alanyl-D-alanine carboxypeptidase NQ550_RS21095 PF00687 Ribosomal protein L1p/L10e family NQ550_RS21100 PF00298 Ribosomal protein L11, RNA binding domain NQ550_RS21100 PF03946 Ribosomal protein L11, N-terminal domain NQ550_RS21105 PF02357 Transcription termination factor nusG NQ550_RS21105 PF00467 KOW motif NQ550_RS21115 PF00471 Ribosomal protein L33 NQ550_RS21125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NQ550_RS21125 PF00205 Thiamine pyrophosphate enzyme, central domain NQ550_RS21125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ550_RS21135 PF04991 LicD family NQ550_RS21140 PF01467 Cytidylyltransferase-like NQ550_RS21145 PF01757 Acyltransferase family NQ550_RS21150 PF00535 Glycosyl transferase family 2 NQ550_RS21155 PF02397 Bacterial sugar transferase NQ550_RS21160 PF00483 Nucleotidyl transferase NQ550_RS21165 PF00132 Bacterial transferase hexapeptide (six repeats) NQ550_RS21165 PF00483 Nucleotidyl transferase NQ550_RS21170 PF14693 Ribosomal protein TL5, C-terminal domain NQ550_RS21170 PF01386 Ribosomal L25p family NQ550_RS21175 PF02920 DNA binding domain of tn916 integrase NQ550_RS21175 PF00589 Phage integrase family NQ550_RS21200 PF00186 Dihydrofolate reductase NQ550_RS21215 PF01741 Large-conductance mechanosensitive channel, MscL NQ550_RS21225 PF02310 B12 binding domain NQ550_RS21225 PF02607 B12 binding domain NQ550_RS21240 PF02310 B12 binding domain NQ550_RS21240 PF02607 B12 binding domain NQ550_RS21270 PF02615 Malate/L-lactate dehydrogenase NQ550_RS21275 PF00293 NUDIX domain NQ550_RS21275 PF09297 NADH pyrophosphatase zinc ribbon domain NQ550_RS21280 PF00226 DnaJ domain NQ550_RS21280 PF01556 DnaJ C terminal domain NQ550_RS21280 PF00684 DnaJ central domain NQ550_RS21285 PF00011 Hsp20/alpha crystallin family NQ550_RS21290 PF00011 Hsp20/alpha crystallin family NQ550_RS21320 PF00072 Response regulator receiver domain NQ550_RS21320 PF12833 Helix-turn-helix domain NQ550_RS21325 PF00672 HAMP domain NQ550_RS21325 PF02743 Cache domain NQ550_RS21325 PF06580 Histidine kinase NQ550_RS21325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS21330 PF16123 Hydroxyacylglutathione hydrolase C-terminus NQ550_RS21330 PF00753 Metallo-beta-lactamase superfamily NQ550_RS21335 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS21340 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS21345 PF01547 Bacterial extracellular solute-binding protein NQ550_RS21350 PF06250 YhcG PDDEXK nuclease domain NQ550_RS21350 PF17761 DUF1016 N-terminal domain NQ550_RS21380 PF00121 Triosephosphate isomerase NQ550_RS21390 PF01116 Fructose-bisphosphate aldolase class-II NQ550_RS21395 PF01979 Amidohydrolase family NQ550_RS21400 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NQ550_RS21410 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS21415 PF01380 SIS domain NQ550_RS21420 PF01116 Fructose-bisphosphate aldolase class-II NQ550_RS21425 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS21435 PF00005 ABC transporter NQ550_RS21440 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS21445 PF00365 Phosphofructokinase NQ550_RS21450 PF02417 Chromate transporter NQ550_RS21455 PF02417 Chromate transporter NQ550_RS21460 PF00356 Bacterial regulatory proteins, lacI family NQ550_RS21465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS21465 PF00072 Response regulator receiver domain NQ550_RS21465 PF01627 Hpt domain NQ550_RS21465 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS21470 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS21475 PF00528 Binding-protein-dependent transport system inner membrane component NQ550_RS21480 PF13416 Bacterial extracellular solute-binding protein NQ550_RS21490 PF02311 AraC-like ligand binding domain NQ550_RS21490 PF12833 Helix-turn-helix domain NQ550_RS21495 PF04205 FMN-binding domain NQ550_RS21495 PF12801 4Fe-4S binding domain NQ550_RS21505 PF00578 AhpC/TSA family NQ550_RS21515 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS21515 PF00072 Response regulator receiver domain NQ550_RS21520 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS21520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS21520 PF00672 HAMP domain NQ550_RS21535 PF00892 EamA-like transporter family NQ550_RS21545 PF02110 Hydroxyethylthiazole kinase family NQ550_RS21550 PF01554 MatE NQ550_RS21560 PF00654 Voltage gated chloride channel NQ550_RS21585 PF00550 Phosphopantetheine attachment site NQ550_RS21595 PF00975 Thioesterase domain NQ550_RS21595 PF00550 Phosphopantetheine attachment site NQ550_RS21595 PF00668 Condensation domain NQ550_RS21595 PF13193 AMP-binding enzyme C-terminal domain NQ550_RS21595 PF00501 AMP-binding enzyme NQ550_RS21605 PF03062 MBOAT, membrane-bound O-acyltransferase family NQ550_RS21645 PF13180 PDZ domain NQ550_RS21655 PF10502 Signal peptidase, peptidase S26 NQ550_RS21660 PF00155 Aminotransferase class I and II NQ550_RS21670 PF00330 Aconitase family (aconitate hydratase) NQ550_RS21675 PF00694 Aconitase C-terminal domain NQ550_RS21680 PF00330 Aconitase family (aconitate hydratase) NQ550_RS21685 PF00694 Aconitase C-terminal domain NQ550_RS21690 PF01676 Metalloenzyme superfamily NQ550_RS21695 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NQ550_RS21700 PF01048 Phosphorylase superfamily NQ550_RS21750 PF00005 ABC transporter NQ550_RS21750 PF13732 Domain of unknown function (DUF4162) NQ550_RS21765 PF00512 His Kinase A (phospho-acceptor) domain NQ550_RS21765 PF00672 HAMP domain NQ550_RS21765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ550_RS21765 PF18698 Histidine kinase sensor domain NQ550_RS21770 PF00486 Transcriptional regulatory protein, C terminal NQ550_RS21770 PF00072 Response regulator receiver domain NQ550_RS21785 PF06970 Replication initiator protein A (RepA) N-terminus NQ550_RS21785 PF18008 Replication initiator protein A C-terminal domain NQ550_RS21790 PF02195 ParB-like nuclease domain NQ550_RS21790 PF17762 HTH domain found in ParB protein NQ550_RS21795 PF13614 AAA domain NQ550_RS21805 PF17762 HTH domain found in ParB protein NQ550_RS21805 PF02195 ParB-like nuclease domain NQ550_RS21825 PF02403 Seryl-tRNA synthetase N-terminal domain NQ550_RS21825 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NQ550_RS21835 PF17762 HTH domain found in ParB protein NQ550_RS21835 PF02195 ParB-like nuclease domain NQ550_RS21840 PF13614 AAA domain NQ550_RS21865 PF00005 ABC transporter NQ550_RS21870 PF02527 rRNA small subunit methyltransferase G NQ550_RS21875 PF13932 GidA associated domain NQ550_RS21875 PF01134 Glucose inhibited division protein A NQ550_RS21880 PF01926 50S ribosome-binding GTPase NQ550_RS21880 PF12631 MnmE helical domain NQ550_RS21880 PF10396 GTP-binding protein TrmE N-terminus NQ550_RS21885 PF14804 Jag N-terminus NQ550_RS21885 PF01424 R3H domain NQ550_RS21890 PF02096 60Kd inner membrane protein NQ550_RS21895 PF01809 Putative membrane protein insertion efficiency factor NQ550_RS21900 PF00825 Ribonuclease P NQ550_RS21905 PF00468 Ribosomal protein L34