LOCUS NC_038439 2621 bp DNA circular VRL 24-AUG-2018 DEFINITION Boerhavia yellow spot virus isolate Yucatan segment DNA A, complete sequence. ACCESSION NC_038439 VERSION NC_038439.1 DBLINK BioProject: PRJNA485481 KEYWORDS RefSeq. SOURCE Boerhavia yellow spot virus ORGANISM Boerhavia yellow spot virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2621) AUTHORS Hernandez-Zepeda,C., Idris,A.M., Carnevali,G., Brown,J.K. and Moreno-Valenzuela,O.A. TITLE Molecular characterization of three new begomoviruses from Yucatan, Mexico JOURNAL Unpublished REFERENCE 2 (bases 1 to 2621) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2621) AUTHORS Hernandez-Zepeda,C. and Moreno-Valenzuela,O.A. TITLE Direct Submission JOURNAL Submitted (15-NOV-2006) Unidad de bioquimica y biologia molecular de plantas, Centro de Investigacion Cientifica de Yucatan, Calle 43 No 130, Merida, Yucatan 97200, Mexico COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to EF121755. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2621 /organism="Boerhavia yellow spot virus" /mol_type="genomic DNA" /isolate="Yucatan" /host="Boerhavia coccinea" /db_xref="taxon:361697" /segment="DNA A" /country="Mexico" gene 222..971 /gene="AV1" /locus_tag="D1Q62_gp1" /db_xref="GeneID:37617245" CDS 222..971 /gene="AV1" /locus_tag="D1Q62_gp1" /codon_start=1 /product="coat protein" /protein_id="YP_009506374.1" /db_xref="GeneID:37617245" /translation="MPKRDAPWRLMAGPSKVSRNVNYSPRAGPKADKPSIWANRPMYR KPRFYRLFRTPDVPKGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF CVKSVYILGKVWMDDNIKLKNHTNIVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTAT VKNDLRDRFQVMHKFHAKVTGGQYASNEQSLVKRFWRVNNHVVYNHQEAAKYENHTEN ALLLYMACSHASNPVYATLKIRIYFYDSITN" gene complement(968..1654) /gene="AC3" /locus_tag="D1Q62_gp2" /db_xref="GeneID:37617242" CDS complement(968..1366) /gene="AC3" /locus_tag="D1Q62_gp2" /codon_start=1 /product="AC3" /protein_id="YP_009506375.1" /db_xref="GeneID:37617242" /translation="MDSRTGESITARQAENSAFIWEVPNPLYFRMQKIEDLPYIDTRI YHVQIRFNHNLRRALHLHKAFLNFQVWTTSVRASGTTYLNRFRHLVMLYLDNLGLICI NNVIRAVRFATDKPYVQHVLENHEIKFNFY" gene complement(1113..1502) /gene="AC2" /locus_tag="D1Q62_gp3" /db_xref="GeneID:37617244" CDS complement(1113..1502) /gene="AC2" /locus_tag="D1Q62_gp3" /codon_start=1 /product="AC2" /protein_id="YP_009506376.1" /db_xref="GeneID:37617244" /translation="MQNSSSSTPPSIKPQHRIAKRRAIRRRRIDLNCGCTIFLSLSCA NYGFTHRGEHHCSSGREFRFYLGGSKSPLFQDAENRGPPVHRHEDIPRPDPVQPQPEE GTASTQGLPEFPSLDDISSSFWDDLFK" gene complement(1465..2499) /gene="AC1" /locus_tag="D1Q62_gp4" /db_xref="GeneID:37617243" CDS complement(1465..2499) /gene="AC1" /locus_tag="D1Q62_gp4" /note="Rep" /codon_start=1 /product="replication protein" /protein_id="YP_009506377.1" /db_xref="GeneID:37617243" /translation="MPLAKRFRLQAKNIFLTYPKCSLTKEAALQQIRSLQLPSNKKYI KICRELHENGEPHLHVLLQLEGKVQITNQRQFDLVSPTRSAHFHPNIQGAKSSSDVKS YIDKDGDTLEWGEFQVDGRSARGGQQTSNDSYAKALNASGVQEALQVLKEEQPRDFVK DYHNLKSNLERIFAKAPQPWVPPFELSSFTNVPEEMQCWADEYFGGHSAARPHRPISL IVEGGSRVGKTMWARALGRHNYLSGHLDFNPRVYSNDVMYNVIDDVSPHYLKLKHWKE LIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLNKLENAALREWTEQNA KFIFIHSPLY" ORIGIN 1 accggatggc cgcgattttt tttggacggt cacgatttga ttaggcccca ccacaaatga 61 caaagcactg cgttttgagt gccccccttt aatttgaaca gctagtggac acgtggtcca 121 cccatatttc gtttgtgggg cctatgtaat gacttaactg ttaagttgac aggcaataaa 181 tagatggtcc cccccattat ctatttttgc tttaatttga aatgcctaag cgggacgccc 241 cttggcgcct aatggctggg ccctccaagg ttagccgtaa tgtcaattat tcgcctaggg 301 ctggtcccaa agctgataag ccgtcgattt gggcgaacag gcccatgtac aggaagccaa 361 ggttttaccg gctattcaga actccagacg tccccaaagg atgtgaaggg ccgtgtaagg 421 tccagtcgtt tgagcagcgc catgatatat cccatgtggg taaggtcatg tgcatttccg 481 acgtgacaag gggcaacggc attacgcacc gcgttggtaa gcggttctgc gtcaagtctg 541 tgtacatatt aggcaaggtg tggatggacg ataatattaa actgaagaac cacaccaaca 601 tcgtcatgtt ctggctggtc agggaccgga gaccctacgg cactcccatg gattttggcc 661 aggtgttcaa catgttcgac aacgagccta gtactgccac tgtgaagaac gatctgcgtg 721 atcggttcca agtcatgcac aagttccacg cgaaggttac cggcggtcag tatgccagta 781 acgagcagtc cctggtgaag agattctgga gggtcaacaa ccacgtggtg tacaaccatc 841 aggaggctgc caagtacgag aatcacactg agaacgccct gttattgtat atggcatgta 901 gtcatgcctc aaatcctgtg tatgcgacat tgaaaattcg gatctatttt tatgattcga 961 taacaaatta ataaaaattg aattttattt catgattctc gagtacatgt tgtacatatg 1021 gtttgtctgt tgcaaaccga acagctctta ttacattgtt tatacagatg agccctagat 1081 tgtctaggta caacatgact aagtgcctaa atctatttaa ataagtcgtc ccagaagctc 1141 gaactgatgt cgtccagact tggaaattca ggaaggcctt gtgtagatgc agtgccctcc 1201 tcaggttgtg gttgaaccgg atctggacgt ggtatatcct cgtgtctatg tacgggaggt 1261 cctctatttt ctgcatcctg aaatagaggg gatttggaac ctcccagata aaagcggaat 1321 tctctgcctg acgagcagtg atgctctccc ctgtgcgtga atccatagtt tgcacagctg 1381 agagagagga aaatagtgca gccgcagttc aggtcgatgc gtcgtctccg gatggctctt 1441 ctcttagcaa tcctgtgttg tggtttaata gaggggggag tggatgaaga tgaattttgc 1501 attttgctct gtccactccc tgagagctgc attctccaat ttattgagga agtctttata 1561 gctggacccc tcgccaggat tgcaaagcac gattgatggg atgccacctt taatttgaac 1621 tggcttgccg tacttgcaat ttgattgcca gtccctttgg gccccaatca attctttcca 1681 gtgctttagc tttagataat gcgggctgac atcatcgatg acgttgtaca tcacatcgtt 1741 tgagtaaacc cttggattga aatccaggtg gccactcaga tagttgtgcc gccccaaagc 1801 acgggcccac attgttttgc ccaccctcga accaccttca acgattaagc ttataggcct 1861 gtgcggccgc gcagcggaat ggccaccgaa atactcatca gcccagcatt gcatctcctc 1921 cggcacattt gtgaaagagg aaagttcaaa tggaggaacc catggttgag gagcctttgc 1981 gaagatcctc tctaggttag acttcagatt gtgataatct ttcacaaagt cccttggttg 2041 ttcctccttt agaacttgaa gtgcttcttg cactccagat gcgttcagcg ccttggcgta 2101 tgagtcgtta gacgtctgct gacctcctct agcagatctc ccgtcgacct ggaattcccc 2161 ccattcaagg gtatctccgt ccttgtcaat gtaggacttg acatcggagc ttgatttagc 2221 tccctgaatg ttcggatgga aatgtgctga tcgggttggg gaaaccaggt cgaactgtcg 2281 ttgattcgtg atctggactt tcccttccaa ctgcaagagc acatggaggt gaggttcccc 2341 attttcgtgt agctccctgc agattttaat gtatttcttg ttggaaggga gctggagaga 2401 ccttatttgc tgaagagccg cttcctttgt aagcgagcat ttgggatatg tgaggaagat 2461 gtttttagct tggagtctaa aacgtttagc cagtggcatt ttgtgtaaat aaggggtgta 2521 ctccaattga ggttcccttc aaaatgctga aacaattgga gtattggagt acaatatata 2581 gtaagagaag tcagtacata gcggccatcc gatctaatat t //