locus-tag class description BN112_0033 PF06791 Prophage tail length tape measure protein BN112_0040 PF00717 Peptidase S24-like BN112_0072 PF02586 SOS response associated peptidase (SRAP) BN112_0077 PF00313 'Cold-shock' DNA-binding domain BN112_0079 PF00313 'Cold-shock' DNA-binding domain BN112_0080 PF03350 Uncharacterized protein family, UPF0114 BN112_0081 PF05697 Bacterial trigger factor protein (TF) BN112_0081 PF05698 Bacterial trigger factor protein (TF) C-terminus BN112_0081 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BN112_0082 PF00574 Clp protease BN112_0083 PF07724 AAA domain (Cdc48 subfamily) BN112_0083 PF10431 C-terminal, D2-small domain, of ClpB protein BN112_0083 PF06689 ClpX C4-type zinc finger BN112_0084 PF00004 ATPase family associated with various cellular activities (AAA) BN112_0084 PF05362 Lon protease (S16) C-terminal proteolytic domain BN112_0084 PF02190 ATP-dependent protease La (LON) substrate-binding domain BN112_0085 PF03466 LysR substrate binding domain BN112_0085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0086 PF02515 CoA-transferase family III BN112_0087 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0088 PF01575 MaoC like domain BN112_0089 PF00378 Enoyl-CoA hydratase/isomerase BN112_0091 PF02803 Thiolase, C-terminal domain BN112_0091 PF00108 Thiolase, N-terminal domain BN112_0093 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_0093 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_0093 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_0095 PF01144 Coenzyme A transferase BN112_0096 PF01144 Coenzyme A transferase BN112_0097 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0098 PF03797 Autotransporter beta-domain BN112_0098 PF03212 Pertactin BN112_0099 PF01726 LexA DNA binding domain BN112_0099 PF00717 Peptidase S24-like BN112_0100 PF00155 Aminotransferase class I and II BN112_0101 PF00271 Helicase conserved C-terminal domain BN112_0101 PF04851 Type III restriction enzyme, res subunit BN112_0101 PF02151 UvrB/uvrC motif BN112_0101 PF12344 Ultra-violet resistance protein B BN112_0101 PF17757 UvrB interaction domain BN112_0102 PF01451 Low molecular weight phosphotyrosine protein phosphatase BN112_0103 PF02082 Transcriptional regulator BN112_0104 PF00266 Aminotransferase class-V BN112_0105 PF01592 NifU-like N terminal domain BN112_0106 PF01521 Iron-sulphur cluster biosynthesis BN112_0107 PF07743 HSCB C-terminal oligomerisation domain BN112_0108 PF00012 Hsp70 protein BN112_0109 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_0110 PF04384 Iron-sulphur cluster assembly BN112_0111 PF02142 MGS-like domain BN112_0112 PF00378 Enoyl-CoA hydratase/isomerase BN112_0113 PF00005 ABC transporter BN112_0113 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_0115 PF11862 Domain of unknown function (DUF3382) BN112_0115 PF02653 Branched-chain amino acid transport system / permease component BN112_0117 PF00005 ABC transporter BN112_0118 PF00501 AMP-binding enzyme BN112_0119 PF17932 Tetracyclin repressor-like, C-terminal domain BN112_0119 PF00440 Bacterial regulatory proteins, tetR family BN112_0121 PF01336 OB-fold nucleic acid binding domain BN112_0121 PF00152 tRNA synthetases class II (D, K and N) BN112_0122 PF00106 short chain dehydrogenase BN112_0124 PF17768 RecJ OB domain BN112_0124 PF02272 DHHA1 domain BN112_0124 PF01368 DHH family BN112_0126 PF12704 MacB-like periplasmic core domain BN112_0126 PF02687 FtsX-like permease family BN112_0127 PF00005 ABC transporter BN112_0128 PF01026 TatD related DNase BN112_0130 PF03772 Competence protein BN112_0130 PF13567 Domain of unknown function (DUF4131) BN112_0130 PF00753 Metallo-beta-lactamase superfamily BN112_0132 PF02811 PHP domain BN112_0133 PF01272 Transcription elongation factor, GreA/GreB, C-term BN112_0133 PF03449 Transcription elongation factor, N-terminal BN112_0134 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_0135 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BN112_0135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_0136 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BN112_0137 PF02769 AIR synthase related protein, C-terminal domain BN112_0137 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BN112_0137 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BN112_0138 PF05594 Haemagluttinin repeat BN112_0138 PF13332 Hemagglutinin repeat BN112_0138 PF13018 Extended Signal Peptide of Type V secretion system BN112_0138 PF05860 haemagglutination activity domain BN112_0139 PF01546 Peptidase family M20/M25/M40 BN112_0142 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0144 PF01925 Sulfite exporter TauE/SafE BN112_0145 PF08534 Redoxin BN112_0146 PF13098 Thioredoxin-like domain BN112_0148 PF00196 Bacterial regulatory proteins, luxR family BN112_0148 PF00072 Response regulator receiver domain BN112_0151 PF00478 IMP dehydrogenase / GMP reductase domain BN112_0151 PF00571 CBS domain BN112_0152 PF02540 NAD synthase BN112_0152 PF00117 Glutamine amidotransferase class-I BN112_0152 PF00958 GMP synthase C terminal domain BN112_0154 PF07690 Major Facilitator Superfamily BN112_0155 PF03595 Voltage-dependent anion channel BN112_0156 PF01614 Bacterial transcriptional regulator BN112_0156 PF09339 IclR helix-turn-helix domain BN112_0157 PF01979 Amidohydrolase family BN112_0159 PF00005 ABC transporter BN112_0160 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0162 PF01965 DJ-1/PfpI family BN112_0163 PF00916 Sulfate permease family BN112_0163 PF01740 STAS domain BN112_0164 PF10996 Beta-Casp domain BN112_0164 PF00753 Metallo-beta-lactamase superfamily BN112_0164 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BN112_0166 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0167 PF04909 Amidohydrolase BN112_0168 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0169 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0170 PF02515 CoA-transferase family III BN112_0173 PF04909 Amidohydrolase BN112_0174 PF03972 MmgE/PrpD family BN112_0175 PF00171 Aldehyde dehydrogenase family BN112_0176 PF03466 LysR substrate binding domain BN112_0176 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0178 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0180 PF12706 Beta-lactamase superfamily domain BN112_0181 PF01965 DJ-1/PfpI family BN112_0181 PF12833 Helix-turn-helix domain BN112_0182 PF00155 Aminotransferase class I and II BN112_0182 PF00392 Bacterial regulatory proteins, gntR family BN112_0184 PF01810 LysE type translocator BN112_0186 PF01546 Peptidase family M20/M25/M40 BN112_0186 PF07687 Peptidase dimerisation domain BN112_0187 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_0188 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0189 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0189 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_0190 PF00005 ABC transporter BN112_0190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_0191 PF00356 Bacterial regulatory proteins, lacI family BN112_0195 PF02515 CoA-transferase family III BN112_0197 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0198 PF07702 UTRA domain BN112_0198 PF00392 Bacterial regulatory proteins, gntR family BN112_0199 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0200 PF02615 Malate/L-lactate dehydrogenase BN112_0201 PF01266 FAD dependent oxidoreductase BN112_0202 PF03807 NADP oxidoreductase coenzyme F420-dependent BN112_0202 PF14748 Pyrroline-5-carboxylate reductase dimerisation BN112_0203 PF00392 Bacterial regulatory proteins, gntR family BN112_0203 PF07729 FCD domain BN112_0208 PF00005 ABC transporter BN112_0209 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BN112_0212 PF00248 Aldo/keto reductase family BN112_0213 PF00158 Sigma-54 interaction domain BN112_0213 PF02954 Bacterial regulatory protein, Fis family BN112_0213 PF01590 GAF domain BN112_0214 PF00171 Aldehyde dehydrogenase family BN112_0217 PF04286 Protein of unknown function (DUF445) BN112_0218 PF03466 LysR substrate binding domain BN112_0218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0219 PF02567 Phenazine biosynthesis-like protein BN112_0220 PF07237 Protein of unknown function (DUF1428) BN112_0221 PF02805 Metal binding domain of Ada BN112_0221 PF12833 Helix-turn-helix domain BN112_0223 PF03625 Domain of unknown function DUF302 BN112_0223 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BN112_0227 PF01740 STAS domain BN112_0227 PF00916 Sulfate permease family BN112_0230 PF02535 ZIP Zinc transporter BN112_0232 PF00005 ABC transporter BN112_0232 PF00664 ABC transporter transmembrane region BN112_0233 PF00583 Acetyltransferase (GNAT) family BN112_0236 PF07690 Major Facilitator Superfamily BN112_0240 PF12833 Helix-turn-helix domain BN112_0240 PF06719 AraC-type transcriptional regulator N-terminus BN112_0242 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BN112_0243 PF01799 [2Fe-2S] binding domain BN112_0243 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_0245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0245 PF03466 LysR substrate binding domain BN112_0247 PF00793 DAHP synthetase I family BN112_0248 PF01810 LysE type translocator BN112_0249 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BN112_0249 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_0252 PF00043 Glutathione S-transferase, C-terminal domain BN112_0252 PF02798 Glutathione S-transferase, N-terminal domain BN112_0253 PF00155 Aminotransferase class I and II BN112_0253 PF00392 Bacterial regulatory proteins, gntR family BN112_0255 PF00892 EamA-like transporter family BN112_0257 PF07687 Peptidase dimerisation domain BN112_0257 PF01546 Peptidase family M20/M25/M40 BN112_0258 PF01554 MatE BN112_0259 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain BN112_0259 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain BN112_0262 PF05853 beta-keto acid cleavage enzyme BN112_0263 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_0263 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_0264 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0264 PF03466 LysR substrate binding domain BN112_0265 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_0267 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_0268 PF01370 NAD dependent epimerase/dehydratase family BN112_0269 PF01261 Xylose isomerase-like TIM barrel BN112_0270 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BN112_0270 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BN112_0271 PF00920 Dehydratase family BN112_0274 PF00920 Dehydratase family BN112_0275 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0276 PF00732 GMC oxidoreductase BN112_0276 PF05199 GMC oxidoreductase BN112_0277 PF09084 NMT1/THI5 like BN112_0278 PF00005 ABC transporter BN112_0279 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0280 PF07702 UTRA domain BN112_0280 PF00392 Bacterial regulatory proteins, gntR family BN112_0282 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0282 PF03466 LysR substrate binding domain BN112_0284 PF01435 Peptidase family M48 BN112_0286 PF07690 Major Facilitator Superfamily BN112_0287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0287 PF03466 LysR substrate binding domain BN112_0288 PF16347 Domain of unknown function (DUF4976) BN112_0288 PF00884 Sulfatase BN112_0289 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0291 PF01970 Tripartite tricarboxylate transporter TctA family BN112_0293 PF01850 PIN domain BN112_0300 PF04261 Dyp-type peroxidase family BN112_0301 PF04454 Encapsulating protein for peroxidase BN112_0302 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_0304 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_0305 PF00857 Isochorismatase family BN112_0307 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0308 PF01522 Polysaccharide deacetylase BN112_0310 PF01425 Amidase BN112_0316 PF01152 Bacterial-like globin BN112_0318 PF00005 ABC transporter BN112_0319 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0320 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_0321 PF00403 Heavy-metal-associated domain BN112_0322 PF13411 MerR HTH family regulatory protein BN112_0324 PF00206 Lyase BN112_0324 PF14698 Argininosuccinate lyase C-terminal BN112_0325 PF00924 Mechanosensitive ion channel BN112_0326 PF02540 NAD synthase BN112_0326 PF00795 Carbon-nitrogen hydrolase BN112_0327 PF00543 Nitrogen regulatory protein P-II BN112_0329 PF01479 S4 domain BN112_0332 PF03466 LysR substrate binding domain BN112_0332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0334 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_0335 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0336 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0336 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_0337 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_0337 PF00005 ABC transporter BN112_0338 PF01810 LysE type translocator BN112_0339 PF07152 YaeQ protein BN112_0340 PF07690 Major Facilitator Superfamily BN112_0341 PF04345 Chorismate lyase BN112_0342 PF01479 S4 domain BN112_0342 PF00849 RNA pseudouridylate synthase BN112_0343 PF03466 LysR substrate binding domain BN112_0343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0344 PF00529 HlyD membrane-fusion protein of T1SS BN112_0344 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BN112_0345 PF00873 AcrB/AcrD/AcrF family BN112_0346 PF02321 Outer membrane efflux protein BN112_0348 PF02630 SCO1/SenC BN112_0349 PF01432 Peptidase family M3 BN112_0350 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BN112_0350 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BN112_0351 PF00072 Response regulator receiver domain BN112_0351 PF00196 Bacterial regulatory proteins, luxR family BN112_0352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_0352 PF00512 His Kinase A (phospho-acceptor) domain BN112_0352 PF00989 PAS fold BN112_0353 PF00456 Transketolase, thiamine diphosphate binding domain BN112_0353 PF17831 Pyruvate dehydrogenase E1 component middle domain BN112_0354 PF00364 Biotin-requiring enzyme BN112_0354 PF02817 e3 binding domain BN112_0354 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BN112_0355 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_0355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BN112_0356 PF00700 Bacterial flagellin C-terminal helical region BN112_0356 PF00669 Bacterial flagellin N-terminal helical region BN112_0357 PF04545 Sigma-70, region 4 BN112_0357 PF04542 Sigma-70 region 2 BN112_0357 PF04539 Sigma-70 region 3 BN112_0358 PF05247 Flagellar transcriptional activator (FlhD) BN112_0359 PF05280 Flagellar transcriptional activator (FlhC) BN112_0360 PF01618 MotA/TolQ/ExbB proton channel family BN112_0361 PF13677 Membrane MotB of proton-channel complex MotA/MotB BN112_0361 PF00691 OmpA family BN112_0362 PF00072 Response regulator receiver domain BN112_0363 PF02895 Signal transducing histidine kinase, homodimeric domain BN112_0363 PF01627 Hpt domain BN112_0363 PF09078 CheY binding BN112_0363 PF01584 CheW-like domain BN112_0363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_0364 PF01584 CheW-like domain BN112_0365 PF02203 Tar ligand binding domain homologue BN112_0365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BN112_0365 PF00672 HAMP domain BN112_0366 PF01739 CheR methyltransferase, SAM binding domain BN112_0366 PF03705 CheR methyltransferase, all-alpha domain BN112_0367 PF00072 Response regulator receiver domain BN112_0367 PF01339 CheB methylesterase BN112_0368 PF00072 Response regulator receiver domain BN112_0369 PF04344 Chemotaxis phosphatase, CheZ BN112_0370 PF01312 FlhB HrpN YscU SpaS Family BN112_0371 PF00771 FHIPEP family BN112_0372 PF00448 SRP54-type protein, GTPase domain BN112_0374 PF04316 Anti-sigma-28 factor, FlgM BN112_0376 PF00460 Flagella basal body rod protein BN112_0377 PF00460 Flagella basal body rod protein BN112_0377 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BN112_0378 PF13861 FlgD Tudor-like domain BN112_0378 PF13860 FlgD Ig-like domain BN112_0378 PF03963 Flagellar hook capping protein - N-terminal region BN112_0379 PF00460 Flagella basal body rod protein BN112_0379 PF07559 Flagellar basal body protein FlaE BN112_0379 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BN112_0380 PF00460 Flagella basal body rod protein BN112_0380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BN112_0381 PF00460 Flagella basal body rod protein BN112_0381 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BN112_0382 PF02107 Flagellar L-ring protein BN112_0383 PF02119 Flagellar P-ring protein BN112_0384 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BN112_0384 PF10135 Rod binding protein BN112_0385 PF00460 Flagella basal body rod protein BN112_0385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BN112_0386 PF00669 Bacterial flagellin N-terminal helical region BN112_0387 PF00672 HAMP domain BN112_0387 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BN112_0387 PF02203 Tar ligand binding domain homologue BN112_0388 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BN112_0388 PF02203 Tar ligand binding domain homologue BN112_0388 PF00672 HAMP domain BN112_0390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BN112_0390 PF00672 HAMP domain BN112_0390 PF02203 Tar ligand binding domain homologue BN112_0391 PF08447 PAS fold BN112_0391 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BN112_0392 PF01311 Bacterial export proteins, family 1 BN112_0393 PF01313 Bacterial export proteins, family 3 BN112_0394 PF00813 FliP family BN112_0395 PF04347 Flagellar biosynthesis protein, FliO BN112_0396 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BN112_0396 PF16973 Flagellar motor switch protein FliN N-terminal BN112_0398 PF03748 Flagellar basal body-associated protein FliL BN112_0401 PF18269 T3SS EscN ATPase C-terminal domain BN112_0401 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BN112_0403 PF14842 FliG N-terminal domain BN112_0403 PF14841 FliG middle domain BN112_0403 PF01706 FliG C-terminal domain BN112_0404 PF01514 Secretory protein of YscJ/FliF family BN112_0404 PF08345 Flagellar M-ring protein C-terminal BN112_0405 PF02049 Flagellar hook-basal body complex protein FliE BN112_0407 PF01312 FlhB HrpN YscU SpaS Family BN112_0410 PF02561 Flagellar protein FliS BN112_0411 PF07196 Flagellin hook IN motif BN112_0411 PF07195 Flagellar hook-associated protein 2 C-terminus BN112_0411 PF02465 Flagellar hook-associated protein 2 N-terminus BN112_0413 PF02875 Mur ligase family, glutamate ligase domain BN112_0413 PF08245 Mur ligase middle domain BN112_0416 PF00156 Phosphoribosyl transferase domain BN112_0419 PF08335 GlnD PII-uridylyltransferase BN112_0419 PF01966 HD domain BN112_0419 PF01909 Nucleotidyltransferase domain BN112_0420 PF00557 Metallopeptidase family M24 BN112_0421 PF00318 Ribosomal protein S2 BN112_0422 PF00889 Elongation factor TS BN112_0423 PF00696 Amino acid kinase family BN112_0424 PF01765 Ribosome recycling factor BN112_0425 PF01255 Putative undecaprenyl diphosphate synthase BN112_0427 PF13288 DXP reductoisomerase C-terminal domain BN112_0427 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BN112_0427 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BN112_0428 PF02163 Peptidase family M50 BN112_0428 PF17820 PDZ domain BN112_0429 PF01103 Surface antigen BN112_0429 PF07244 Surface antigen variable number repeat BN112_0430 PF03938 Outer membrane protein (OmpH-like) BN112_0431 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BN112_0431 PF00132 Bacterial transferase hexapeptide (six repeats) BN112_0432 PF07977 FabA-like domain BN112_0433 PF00132 Bacterial transferase hexapeptide (six repeats) BN112_0433 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BN112_0434 PF02684 Lipid-A-disaccharide synthetase BN112_0435 PF01351 Ribonuclease HII BN112_0436 PF00588 SpoU rRNA Methylase family BN112_0436 PF08032 RNA 2'-O ribose methyltransferase substrate binding BN112_0437 PF03618 Kinase/pyrophosphorylase BN112_0438 PF02896 PEP-utilising enzyme, TIM barrel domain BN112_0438 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BN112_0438 PF00391 PEP-utilising enzyme, mobile domain BN112_0439 PF00958 GMP synthase C terminal domain BN112_0439 PF00117 Glutamine amidotransferase class-I BN112_0441 PF01145 SPFH domain / Band 7 family BN112_0441 PF16200 C-terminal region of band_7 BN112_0442 PF08448 PAS fold BN112_0442 PF00990 Diguanylate cyclase, GGDEF domain BN112_0443 PF01668 SmpB protein BN112_0444 PF03364 Polyketide cyclase / dehydrase and lipid transport BN112_0445 PF03658 RnfH family Ubiquitin BN112_0446 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_0446 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_0446 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_0447 PF00378 Enoyl-CoA hydratase/isomerase BN112_0447 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_0447 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_0448 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BN112_0448 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BN112_0451 PF01571 Aminomethyltransferase folate-binding domain BN112_0452 PF02618 YceG-like family BN112_0453 PF02223 Thymidylate kinase BN112_0454 PF12169 DNA polymerase III subunits gamma and tau domain III BN112_0455 PF01026 TatD related DNase BN112_0458 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_0459 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0460 PF00005 ABC transporter BN112_0461 PF00491 Arginase family BN112_0462 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BN112_0462 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BN112_0463 PF00171 Aldehyde dehydrogenase family BN112_0464 PF01546 Peptidase family M20/M25/M40 BN112_0464 PF07687 Peptidase dimerisation domain BN112_0465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_0465 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_0465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_0467 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BN112_0467 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_0469 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_0469 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BN112_0470 PF00392 Bacterial regulatory proteins, gntR family BN112_0470 PF07729 FCD domain BN112_0471 PF04343 Protein of unknown function, DUF488 BN112_0473 PF06826 Predicted Permease Membrane Region BN112_0473 PF02080 TrkA-C domain BN112_0474 PF00282 Pyridoxal-dependent decarboxylase conserved domain BN112_0476 PF00563 EAL domain BN112_0476 PF00990 Diguanylate cyclase, GGDEF domain BN112_0476 PF03707 Bacterial signalling protein N terminal repeat BN112_0477 PF08281 Sigma-70, region 4 BN112_0477 PF04542 Sigma-70 region 2 BN112_0479 PF03741 Integral membrane protein TerC family BN112_0480 PF03707 Bacterial signalling protein N terminal repeat BN112_0480 PF00563 EAL domain BN112_0480 PF00990 Diguanylate cyclase, GGDEF domain BN112_0484 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BN112_0487 PF03471 Transporter associated domain BN112_0487 PF03741 Integral membrane protein TerC family BN112_0489 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BN112_0490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BN112_0491 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0491 PF03466 LysR substrate binding domain BN112_0493 PF17676 LD-carboxypeptidase C-terminal domain BN112_0493 PF02016 LD-carboxypeptidase N-terminal domain BN112_0496 PF07690 Major Facilitator Superfamily BN112_0498 PF03466 LysR substrate binding domain BN112_0498 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0499 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BN112_0499 PF13378 Enolase C-terminal domain-like BN112_0500 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0503 PF02515 CoA-transferase family III BN112_0504 PF00364 Biotin-requiring enzyme BN112_0505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BN112_0505 PF02785 Biotin carboxylase C-terminal domain BN112_0505 PF00289 Biotin carboxylase, N-terminal domain BN112_0506 PF01039 Carboxyl transferase domain BN112_0507 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0509 PF01266 FAD dependent oxidoreductase BN112_0512 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0513 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0515 PF00005 ABC transporter BN112_0515 PF08402 TOBE domain BN112_0516 PF09339 IclR helix-turn-helix domain BN112_0516 PF01614 Bacterial transcriptional regulator BN112_0518 PF01738 Dienelactone hydrolase family BN112_0519 PF07702 UTRA domain BN112_0519 PF00392 Bacterial regulatory proteins, gntR family BN112_0520 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_0523 PF00491 Arginase family BN112_0524 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0525 PF03466 LysR substrate binding domain BN112_0529 PF02653 Branched-chain amino acid transport system / permease component BN112_0530 PF00005 ABC transporter BN112_0531 PF01557 Fumarylacetoacetate (FAA) hydrolase family BN112_0533 PF07969 Amidohydrolase family BN112_0534 PF12697 Alpha/beta hydrolase family BN112_0539 PF03741 Integral membrane protein TerC family BN112_0541 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0543 PF03781 Sulfatase-modifying factor enzyme 1 BN112_0544 PF07726 ATPase family associated with various cellular activities (AAA) BN112_0544 PF17863 AAA lid domain BN112_0551 PF00884 Sulfatase BN112_0555 PF00196 Bacterial regulatory proteins, luxR family BN112_0555 PF00072 Response regulator receiver domain BN112_0556 PF00082 Subtilase family BN112_0556 PF12951 Passenger-associated-transport-repeat BN112_0556 PF03797 Autotransporter beta-domain BN112_0557 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA BN112_0558 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system BN112_0559 PF00043 Glutathione S-transferase, C-terminal domain BN112_0559 PF02798 Glutathione S-transferase, N-terminal domain BN112_0560 PF03466 LysR substrate binding domain BN112_0560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0561 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0562 PF16385 Domain of unknown function BN112_0562 PF00884 Sulfatase BN112_0564 PF09339 IclR helix-turn-helix domain BN112_0564 PF01614 Bacterial transcriptional regulator BN112_0565 PF02515 CoA-transferase family III BN112_0566 PF00108 Thiolase, N-terminal domain BN112_0566 PF02803 Thiolase, C-terminal domain BN112_0568 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0570 PF03466 LysR substrate binding domain BN112_0571 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0572 PF02515 CoA-transferase family III BN112_0573 PF00378 Enoyl-CoA hydratase/isomerase BN112_0574 PF00378 Enoyl-CoA hydratase/isomerase BN112_0575 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0576 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_0576 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_0576 PF00378 Enoyl-CoA hydratase/isomerase BN112_0577 PF02803 Thiolase, C-terminal domain BN112_0577 PF00108 Thiolase, N-terminal domain BN112_0578 PF00465 Iron-containing alcohol dehydrogenase BN112_0579 PF03061 Thioesterase superfamily BN112_0580 PF01266 FAD dependent oxidoreductase BN112_0581 PF01494 FAD binding domain BN112_0582 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0583 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0583 PF03466 LysR substrate binding domain BN112_0584 PF03358 NADPH-dependent FMN reductase BN112_0585 PF03960 ArsC family BN112_0588 PF07969 Amidohydrolase family BN112_0589 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0591 PF03466 LysR substrate binding domain BN112_0593 PF01590 GAF domain BN112_0593 PF00360 Phytochrome region BN112_0593 PF00563 EAL domain BN112_0593 PF00990 Diguanylate cyclase, GGDEF domain BN112_0594 PF00171 Aldehyde dehydrogenase family BN112_0594 PF00465 Iron-containing alcohol dehydrogenase BN112_0596 PF01145 SPFH domain / Band 7 family BN112_0596 PF16200 C-terminal region of band_7 BN112_0597 PF00005 ABC transporter BN112_0598 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0599 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_0602 PF01568 Molydopterin dinucleotide binding domain BN112_0602 PF00384 Molybdopterin oxidoreductase BN112_0602 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BN112_0603 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BN112_0604 PF03264 NapC/NirT cytochrome c family, N-terminal region BN112_0605 PF00005 ABC transporter BN112_0606 PF03379 CcmB protein BN112_0607 PF01578 Cytochrome C assembly protein BN112_0609 PF03100 CcmE BN112_0610 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BN112_0610 PF01578 Cytochrome C assembly protein BN112_0611 PF08534 Redoxin BN112_0612 PF03918 Cytochrome C biogenesis protein BN112_0615 PF01042 Endoribonuclease L-PSP BN112_0616 PF02558 Ketopantoate reductase PanE/ApbA BN112_0616 PF08546 Ketopantoate reductase PanE/ApbA C terminal BN112_0617 PF13378 Enolase C-terminal domain-like BN112_0618 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0619 PF00330 Aconitase family (aconitate hydratase) BN112_0620 PF00694 Aconitase C-terminal domain BN112_0621 PF00356 Bacterial regulatory proteins, lacI family BN112_0622 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0623 PF02515 CoA-transferase family III BN112_0625 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0626 PF13380 CoA binding domain BN112_0626 PF13607 Succinyl-CoA ligase like flavodoxin domain BN112_0627 PF00392 Bacterial regulatory proteins, gntR family BN112_0627 PF07729 FCD domain BN112_0628 PF03328 HpcH/HpaI aldolase/citrate lyase family BN112_0630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0630 PF03466 LysR substrate binding domain BN112_0632 PF03797 Autotransporter beta-domain BN112_0632 PF13018 Extended Signal Peptide of Type V secretion system BN112_0632 PF16168 Adhesin of bacterial autotransporter system, probable stalk BN112_0633 PF08021 Siderophore-interacting FAD-binding domain BN112_0633 PF04954 Siderophore-interacting protein BN112_0634 PF03551 Transcriptional regulator PadR-like family BN112_0636 PF03372 Endonuclease/Exonuclease/phosphatase family BN112_0637 PF13091 PLD-like domain BN112_0638 PF03706 Lysylphosphatidylglycerol synthase TM region BN112_0645 PF05957 Bacterial protein of unknown function (DUF883) BN112_0646 PF02735 Ku70/Ku80 beta-barrel domain BN112_0647 PF04679 ATP dependent DNA ligase C terminal region BN112_0647 PF01068 ATP dependent DNA ligase domain BN112_0647 PF13298 DNA polymerase Ligase (LigD) BN112_0658 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_0658 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_0658 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_0659 PF00072 Response regulator receiver domain BN112_0659 PF00158 Sigma-54 interaction domain BN112_0659 PF02954 Bacterial regulatory protein, Fis family BN112_0660 PF02954 Bacterial regulatory protein, Fis family BN112_0660 PF00072 Response regulator receiver domain BN112_0660 PF00158 Sigma-54 interaction domain BN112_0661 PF04552 Sigma-54, DNA binding domain BN112_0661 PF00309 Sigma-54 factor, Activator interacting domain (AID) BN112_0661 PF04963 Sigma-54 factor, core binding domain BN112_0663 PF08323 Starch synthase catalytic domain BN112_0663 PF00534 Glycosyl transferases group 1 BN112_0664 PF11896 Domain of unknown function (DUF3416) BN112_0664 PF00128 Alpha amylase, catalytic domain BN112_0665 PF16657 Maltogenic Amylase, C-terminal domain BN112_0665 PF00128 Alpha amylase, catalytic domain BN112_0666 PF02806 Alpha amylase, C-terminal all-beta domain BN112_0666 PF00128 Alpha amylase, catalytic domain BN112_0666 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BN112_0667 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BN112_0667 PF00128 Alpha amylase, catalytic domain BN112_0668 PF00128 Alpha amylase, catalytic domain BN112_0668 PF11941 Domain of unknown function (DUF3459) BN112_0669 PF02446 4-alpha-glucanotransferase BN112_0670 PF00128 Alpha amylase, catalytic domain BN112_0671 PF00072 Response regulator receiver domain BN112_0671 PF13188 PAS domain BN112_0671 PF08448 PAS fold BN112_0671 PF00512 His Kinase A (phospho-acceptor) domain BN112_0671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_0672 PF08543 Phosphomethylpyrimidine kinase BN112_0673 PF01168 Alanine racemase, N-terminal domain BN112_0674 PF00155 Aminotransferase class I and II BN112_0674 PF00392 Bacterial regulatory proteins, gntR family BN112_0677 PF00582 Universal stress protein family BN112_0678 PF00248 Aldo/keto reductase family BN112_0680 PF02868 Thermolysin metallopeptidase, alpha-helical domain BN112_0680 PF01447 Thermolysin metallopeptidase, catalytic domain BN112_0680 PF16485 Protealysin propeptide BN112_0681 PF07681 DoxX BN112_0683 PF00578 AhpC/TSA family BN112_0684 PF03960 ArsC family BN112_0685 PF02515 CoA-transferase family III BN112_0689 PF00255 Glutathione peroxidase BN112_0690 PF00043 Glutathione S-transferase, C-terminal domain BN112_0690 PF02798 Glutathione S-transferase, N-terminal domain BN112_0693 PF03099 Biotin/lipoate A/B protein ligase family BN112_0693 PF10437 Bacterial lipoate protein ligase C-terminus BN112_0696 PF02666 Phosphatidylserine decarboxylase BN112_0697 PF01070 FMN-dependent dehydrogenase BN112_0698 PF03180 NLPA lipoprotein BN112_0699 PF08808 RES domain BN112_0701 PF04241 Protein of unknown function (DUF423) BN112_0702 PF00892 EamA-like transporter family BN112_0704 PF07995 Glucose / Sorbosone dehydrogenase BN112_0705 PF00043 Glutathione S-transferase, C-terminal domain BN112_0705 PF02798 Glutathione S-transferase, N-terminal domain BN112_0706 PF01177 Asp/Glu/Hydantoin racemase BN112_0707 PF00005 ABC transporter BN112_0708 PF00005 ABC transporter BN112_0708 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_0709 PF11862 Domain of unknown function (DUF3382) BN112_0709 PF02653 Branched-chain amino acid transport system / permease component BN112_0710 PF02653 Branched-chain amino acid transport system / permease component BN112_0711 PF13458 Periplasmic binding protein BN112_0712 PF02592 Putative vitamin uptake transporter BN112_0713 PF03807 NADP oxidoreductase coenzyme F420-dependent BN112_0713 PF14748 Pyrroline-5-carboxylate reductase dimerisation BN112_0714 PF13416 Bacterial extracellular solute-binding protein BN112_0715 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0716 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0717 PF00005 ABC transporter BN112_0717 PF17912 MalK OB fold domain BN112_0718 PF13458 Periplasmic binding protein BN112_0720 PF14765 Polyketide synthase dehydratase BN112_0720 PF00550 Phosphopantetheine attachment site BN112_0720 PF08659 KR domain BN112_0720 PF02801 Beta-ketoacyl synthase, C-terminal domain BN112_0720 PF00698 Acyl transferase domain BN112_0720 PF08240 Alcohol dehydrogenase GroES-like domain BN112_0720 PF16197 Ketoacyl-synthetase C-terminal extension BN112_0720 PF00109 Beta-ketoacyl synthase, N-terminal domain BN112_0721 PF00155 Aminotransferase class I and II BN112_0723 PF00106 short chain dehydrogenase BN112_0724 PF05159 Capsule polysaccharide biosynthesis protein BN112_0725 PF05159 Capsule polysaccharide biosynthesis protein BN112_0726 PF01370 NAD dependent epimerase/dehydratase family BN112_0727 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BN112_0727 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BN112_0727 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BN112_0728 PF02563 Polysaccharide biosynthesis/export protein BN112_0730 PF00534 Glycosyl transferases group 1 BN112_0732 PF00005 ABC transporter BN112_0734 PF00535 Glycosyl transferase family 2 BN112_0737 PF00210 Ferritin-like domain BN112_0738 PF00171 Aldehyde dehydrogenase family BN112_0739 PF03466 LysR substrate binding domain BN112_0739 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0740 PF03466 LysR substrate binding domain BN112_0741 PF00271 Helicase conserved C-terminal domain BN112_0741 PF00270 DEAD/DEAH box helicase BN112_0741 PF17191 RecG wedge domain BN112_0742 PF01042 Endoribonuclease L-PSP BN112_0744 PF00248 Aldo/keto reductase family BN112_0745 PF07690 Major Facilitator Superfamily BN112_0746 PF03466 LysR substrate binding domain BN112_0746 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0747 PF00970 Oxidoreductase FAD-binding domain BN112_0747 PF00175 Oxidoreductase NAD-binding domain BN112_0749 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0750 PF08402 TOBE domain BN112_0750 PF00005 ABC transporter BN112_0751 PF05726 Pirin C-terminal cupin domain BN112_0751 PF02678 Pirin BN112_0752 PF17954 Quercetinase C-terminal cupin domain BN112_0752 PF02678 Pirin BN112_0753 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0753 PF03466 LysR substrate binding domain BN112_0754 PF00158 Sigma-54 interaction domain BN112_0754 PF00072 Response regulator receiver domain BN112_0754 PF02954 Bacterial regulatory protein, Fis family BN112_0755 PF00512 His Kinase A (phospho-acceptor) domain BN112_0755 PF00989 PAS fold BN112_0755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_0756 PF00120 Glutamine synthetase, catalytic domain BN112_0756 PF03951 Glutamine synthetase, beta-Grasp domain BN112_0757 PF04055 Radical SAM superfamily BN112_0757 PF06969 HemN C-terminal domain BN112_0758 PF01725 Ham1 family BN112_0759 PF00563 EAL domain BN112_0759 PF00990 Diguanylate cyclase, GGDEF domain BN112_0759 PF08448 PAS fold BN112_0760 PF00672 HAMP domain BN112_0760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BN112_0760 PF02203 Tar ligand binding domain homologue BN112_0761 PF03466 LysR substrate binding domain BN112_0761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0763 PF03725 3' exoribonuclease family, domain 2 BN112_0763 PF01138 3' exoribonuclease family, domain 1 BN112_0764 PF03755 YicC-like family, N-terminal region BN112_0764 PF08340 Domain of unknown function (DUF1732) BN112_0768 PF01048 Phosphorylase superfamily BN112_0768 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus BN112_0769 PF00877 NlpC/P60 family BN112_0771 PF00034 Cytochrome c BN112_0772 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BN112_0773 PF00625 Guanylate kinase BN112_0774 PF01192 RNA polymerase Rpb6 BN112_0775 PF02824 TGS domain BN112_0775 PF13291 ACT domain BN112_0775 PF04607 Region found in RelA / SpoT proteins BN112_0776 PF00005 ABC transporter BN112_0777 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0778 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_0780 PF05378 Hydantoinase/oxoprolinase N-terminal region BN112_0780 PF01968 Hydantoinase/oxoprolinase BN112_0782 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0782 PF03466 LysR substrate binding domain BN112_0786 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_0787 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_0789 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_0790 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BN112_0790 PF08479 POTRA domain, ShlB-type BN112_0790 PF17287 POTRA domain BN112_0791 PF00419 Fimbrial protein BN112_0792 PF00577 Outer membrane usher protein BN112_0792 PF13954 PapC N-terminal domain BN112_0792 PF13953 PapC C-terminal domain BN112_0793 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BN112_0793 PF02753 Pili assembly chaperone PapD, C-terminal domain BN112_0794 PF16970 Type-1 fimbrial protein, A BN112_0795 PF05860 haemagglutination activity domain BN112_0795 PF13332 Hemagglutinin repeat BN112_0795 PF05594 Haemagluttinin repeat BN112_0795 PF13018 Extended Signal Peptide of Type V secretion system BN112_0796 PF00196 Bacterial regulatory proteins, luxR family BN112_0796 PF00072 Response regulator receiver domain BN112_0797 PF01627 Hpt domain BN112_0797 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_0797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_0797 PF00512 His Kinase A (phospho-acceptor) domain BN112_0797 PF00989 PAS fold BN112_0797 PF00072 Response regulator receiver domain BN112_0799 PF07286 Protein of unknown function (DUF1445) BN112_0800 PF01425 Amidase BN112_0802 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_0805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0805 PF03466 LysR substrate binding domain BN112_0807 PF00005 ABC transporter BN112_0808 PF13472 GDSL-like Lipase/Acylhydrolase family BN112_0809 PF13145 PPIC-type PPIASE domain BN112_0810 PF03009 Glycerophosphoryl diester phosphodiesterase family BN112_0811 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BN112_0812 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_0812 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BN112_0813 PF08534 Redoxin BN112_0813 PF00462 Glutaredoxin BN112_0815 PF09278 MerR, DNA binding BN112_0815 PF00376 MerR family regulatory protein BN112_0816 PF05958 tRNA (Uracil-5-)-methyltransferase BN112_0820 PF01476 LysM domain BN112_0820 PF01551 Peptidase family M23 BN112_0822 PF01975 Survival protein SurE BN112_0823 PF02660 Glycerol-3-phosphate acyltransferase BN112_0824 PF00814 Glycoprotease family BN112_0825 PF00860 Permease family BN112_0826 PF00296 Luciferase-like monooxygenase BN112_0827 PF00085 Thioredoxin BN112_0828 PF01205 Uncharacterized protein family UPF0029 BN112_0832 PF00005 ABC transporter BN112_0833 PF12848 ABC transporter BN112_0833 PF00005 ABC transporter BN112_0834 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_0836 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_0837 PF00378 Enoyl-CoA hydratase/isomerase BN112_0838 PF17676 LD-carboxypeptidase C-terminal domain BN112_0838 PF02016 LD-carboxypeptidase N-terminal domain BN112_0839 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BN112_0843 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BN112_0844 PF01899 Na+/H+ ion antiporter subunit BN112_0845 PF00361 Proton-conducting membrane transporter BN112_0846 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BN112_0847 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BN112_0847 PF13244 Domain of unknown function (DUF4040) BN112_0847 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BN112_0847 PF00361 Proton-conducting membrane transporter BN112_0848 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0850 PF00149 Calcineurin-like phosphoesterase BN112_0850 PF12320 Type 5 capsule protein repressor C-terminal domain BN112_0851 PF01266 FAD dependent oxidoreductase BN112_0852 PF01037 Lrp/AsnC ligand binding domain BN112_0857 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0858 PF00528 Binding-protein-dependent transport system inner membrane component BN112_0859 PF00005 ABC transporter BN112_0859 PF17912 MalK OB fold domain BN112_0860 PF00005 ABC transporter BN112_0860 PF17912 MalK OB fold domain BN112_0861 PF08220 DeoR-like helix-turn-helix domain BN112_0861 PF00455 DeoR C terminal sensor domain BN112_0862 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BN112_0862 PF01266 FAD dependent oxidoreductase BN112_0864 PF00106 short chain dehydrogenase BN112_0865 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0866 PF14537 Cytochrome c3 BN112_0866 PF00890 FAD binding domain BN112_0871 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0872 PF00701 Dihydrodipicolinate synthetase family BN112_0876 PF00472 RF-1 domain BN112_0878 PF01242 6-pyruvoyl tetrahydropterin synthase BN112_0879 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_0880 PF00596 Class II Aldolase and Adducin N-terminal domain BN112_0885 PF00529 HlyD membrane-fusion protein of T1SS BN112_0885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BN112_0886 PF02321 Outer membrane efflux protein BN112_0887 PF02230 Phospholipase/Carboxylesterase BN112_0890 PF07733 Bacterial DNA polymerase III alpha NTPase domain BN112_0890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BN112_0890 PF14579 Helix-hairpin-helix motif BN112_0890 PF02811 PHP domain BN112_0891 PF01266 FAD dependent oxidoreductase BN112_0892 PF02082 Transcriptional regulator BN112_0893 PF00042 Globin BN112_0893 PF00970 Oxidoreductase FAD-binding domain BN112_0893 PF00175 Oxidoreductase NAD-binding domain BN112_0895 PF00817 impB/mucB/samB family BN112_0895 PF11798 IMS family HHH motif BN112_0895 PF11799 impB/mucB/samB family C-terminal domain BN112_0898 PF00326 Prolyl oligopeptidase family BN112_0899 PF17092 Penicillin-binding protein OB-like domain BN112_0899 PF00905 Penicillin binding protein transpeptidase domain BN112_0899 PF00912 Transglycosylase BN112_0900 PF00149 Calcineurin-like phosphoesterase BN112_0903 PF00248 Aldo/keto reductase family BN112_0904 PF00248 Aldo/keto reductase family BN112_0905 PF00664 ABC transporter transmembrane region BN112_0905 PF00005 ABC transporter BN112_0913 PF03797 Autotransporter beta-domain BN112_0913 PF03212 Pertactin BN112_0916 PF00990 Diguanylate cyclase, GGDEF domain BN112_0917 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BN112_0917 PF08447 PAS fold BN112_0918 PF00563 EAL domain BN112_0918 PF12792 CSS motif domain associated with EAL BN112_0919 PF01588 Putative tRNA binding domain BN112_0922 PF00324 Amino acid permease BN112_0925 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0926 PF00682 HMGL-like BN112_0927 PF02515 CoA-transferase family III BN112_0928 PF06506 Propionate catabolism activator BN112_0928 PF00158 Sigma-54 interaction domain BN112_0928 PF02954 Bacterial regulatory protein, Fis family BN112_0929 PF01914 MarC family integral membrane protein BN112_0930 PF00563 EAL domain BN112_0930 PF12792 CSS motif domain associated with EAL BN112_0933 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_0933 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_0933 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_0934 PF02515 CoA-transferase family III BN112_0935 PF00171 Aldehyde dehydrogenase family BN112_0936 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_0936 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_0936 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_0937 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0938 PF03401 Tripartite tricarboxylate transporter family receptor BN112_0939 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_0939 PF03466 LysR substrate binding domain BN112_0943 PF00501 AMP-binding enzyme BN112_0943 PF14535 AMP-binding enzyme C-terminal domain BN112_0944 PF07859 alpha/beta hydrolase fold BN112_0945 PF02515 CoA-transferase family III BN112_0946 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_0948 PF00378 Enoyl-CoA hydratase/isomerase BN112_0950 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BN112_0950 PF00355 Rieske [2Fe-2S] domain BN112_0951 PF13458 Periplasmic binding protein BN112_0952 PF02653 Branched-chain amino acid transport system / permease component BN112_0953 PF02653 Branched-chain amino acid transport system / permease component BN112_0953 PF11862 Domain of unknown function (DUF3382) BN112_0954 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_0954 PF00005 ABC transporter BN112_0955 PF00005 ABC transporter BN112_0957 PF14759 Reductase C-terminal BN112_0957 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_0962 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system BN112_0963 PF00140 Sigma-70 factor, region 1.2 BN112_0963 PF03979 Sigma-70 factor, region 1.1 BN112_0963 PF04542 Sigma-70 region 2 BN112_0963 PF04539 Sigma-70 region 3 BN112_0963 PF04545 Sigma-70, region 4 BN112_0963 PF04546 Sigma-70, non-essential region BN112_0964 PF01807 CHC2 zinc finger BN112_0964 PF08278 DNA primase DnaG DnaB-binding BN112_0964 PF10410 DnaB-helicase binding domain of primase BN112_0964 PF08275 DNA primase catalytic core, N-terminal domain BN112_0965 PF01165 Ribosomal protein S21 BN112_0966 PF00156 Phosphoribosyl transferase domain BN112_0967 PF00709 Adenylosuccinate synthetase BN112_0968 PF13393 Histidyl-tRNA synthetase BN112_0969 PF01145 SPFH domain / Band 7 family BN112_0970 PF12221 Bacterial membrane protein N terminal BN112_0970 PF01145 SPFH domain / Band 7 family BN112_0971 PF01926 50S ribosome-binding GTPase BN112_0971 PF13167 GTP-binding GTPase N-terminal BN112_0971 PF16360 GTP-binding GTPase Middle Region BN112_0972 PF17209 Hfq protein BN112_0973 PF00155 Aminotransferase class I and II BN112_0974 PF01926 50S ribosome-binding GTPase BN112_0974 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BN112_0975 PF13360 PQQ-like domain BN112_0976 PF09976 Tetratricopeptide repeat-like domain BN112_0977 PF13393 Histidyl-tRNA synthetase BN112_0977 PF03129 Anticodon binding domain BN112_0978 PF04551 GcpE protein BN112_0980 PF04055 Radical SAM superfamily BN112_0981 PF00334 Nucleoside diphosphate kinase BN112_0982 PF10458 Valyl tRNA synthetase tRNA binding arm BN112_0982 PF08264 Anticodon-binding domain of tRNA BN112_0982 PF00133 tRNA synthetases class I (I, L, M and V) BN112_0984 PF00486 Transcriptional regulatory protein, C terminal BN112_0984 PF00072 Response regulator receiver domain BN112_0985 PF00512 His Kinase A (phospho-acceptor) domain BN112_0985 PF08521 Two-component sensor kinase N-terminal BN112_0985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_0987 PF00266 Aminotransferase class-V BN112_0988 PF01746 tRNA (Guanine-1)-methyltransferase BN112_0989 PF01782 RimM N-terminal domain BN112_0990 PF00886 Ribosomal protein S16 BN112_0992 PF01206 Sulfurtransferase TusA BN112_0993 PF02272 DHHA1 domain BN112_0993 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BN112_0993 PF01411 tRNA synthetases class II (A) BN112_1002 PF01425 Amidase BN112_1003 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_1003 PF00005 ABC transporter BN112_1004 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1005 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1006 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_1009 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1009 PF03466 LysR substrate binding domain BN112_1010 PF13416 Bacterial extracellular solute-binding protein BN112_1011 PF01266 FAD dependent oxidoreductase BN112_1012 PF00175 Oxidoreductase NAD-binding domain BN112_1012 PF00970 Oxidoreductase FAD-binding domain BN112_1012 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_1013 PF02261 Aspartate decarboxylase BN112_1016 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BN112_1017 PF07005 Sugar-binding N-terminal domain BN112_1017 PF17042 Nucleotide-binding C-terminal domain BN112_1018 PF03812 2-keto-3-deoxygluconate permease BN112_1019 PF05721 Phytanoyl-CoA dioxygenase (PhyH) BN112_1020 PF06339 Ectoine synthase BN112_1021 PF00202 Aminotransferase class-III BN112_1022 PF00583 Acetyltransferase (GNAT) family BN112_1023 PF12802 MarR family BN112_1025 PF00202 Aminotransferase class-III BN112_1026 PF16868 NMT1-like family BN112_1028 PF04235 Protein of unknown function (DUF418) BN112_1029 PF00521 DNA gyrase/topoisomerase IV, subunit A BN112_1031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_1031 PF01751 Toprim domain BN112_1031 PF00986 DNA gyrase B subunit, carboxyl terminus BN112_1031 PF00204 DNA gyrase B BN112_1032 PF00085 Thioredoxin BN112_1033 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BN112_1033 PF07497 Rho termination factor, RNA-binding domain BN112_1033 PF07498 Rho termination factor, N-terminal domain BN112_1035 PF08335 GlnD PII-uridylyltransferase BN112_1035 PF03710 Glutamate-ammonia ligase adenylyltransferase BN112_1036 PF02677 Epoxyqueuosine reductase QueH BN112_1037 PF03315 Serine dehydratase beta chain BN112_1037 PF03313 Serine dehydratase alpha chain BN112_1038 PF02690 Na+/Pi-cotransporter BN112_1039 PF01738 Dienelactone hydrolase family BN112_1041 PF01367 5'-3' exonuclease, C-terminal SAM fold BN112_1041 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BN112_1041 PF00476 DNA polymerase family A BN112_1041 PF01612 3'-5' exonuclease BN112_1042 PF03641 Possible lysine decarboxylase BN112_1045 PF00679 Elongation factor G C-terminus BN112_1045 PF00009 Elongation factor Tu GTP binding domain BN112_1045 PF03144 Elongation factor Tu domain 2 BN112_1046 PF16198 tRNA pseudouridylate synthase B C-terminal domain BN112_1046 PF01509 TruB family pseudouridylate synthase (N terminal domain) BN112_1047 PF02033 Ribosome-binding factor A BN112_1048 PF00009 Elongation factor Tu GTP binding domain BN112_1048 PF04760 Translation initiation factor IF-2, N-terminal region BN112_1048 PF08364 Bacterial translation initiation factor IF-2 associated region BN112_1048 PF11987 Translation-initiation factor 2 BN112_1049 PF08529 NusA N-terminal domain BN112_1049 PF13184 NusA-like KH domain BN112_1050 PF02576 RimP N-terminal domain BN112_1050 PF17384 RimP C-terminal SH3 domain BN112_1051 PF01479 S4 domain BN112_1051 PF00849 RNA pseudouridylate synthase BN112_1052 PF04079 Segregation and condensation complex subunit ScpB BN112_1053 PF03466 LysR substrate binding domain BN112_1053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1054 PF00881 Nitroreductase family BN112_1055 PF02492 CobW/HypB/UreG, nucleotide-binding domain BN112_1055 PF07683 Cobalamin synthesis protein cobW C-terminal domain BN112_1057 PF14497 Glutathione S-transferase, C-terminal domain BN112_1057 PF02798 Glutathione S-transferase, N-terminal domain BN112_1058 PF02401 LytB protein BN112_1059 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BN112_1060 PF04002 RadC-like JAB domain BN112_1061 PF04199 Putative cyclase BN112_1062 PF03301 Tryptophan 2,3-dioxygenase BN112_1063 PF01197 Ribosomal protein L31 BN112_1065 PF01554 MatE BN112_1068 PF18073 Rubredoxin metal binding domain BN112_1069 PF00092 von Willebrand factor type A domain BN112_1069 PF12034 Domain of unknown function (DUF3520) BN112_1069 PF12450 von Willebrand factor BN112_1070 PF04542 Sigma-70 region 2 BN112_1070 PF04545 Sigma-70, region 4 BN112_1073 PF00842 Alanine racemase, C-terminal domain BN112_1073 PF01168 Alanine racemase, N-terminal domain BN112_1076 PF01593 Flavin containing amine oxidoreductase BN112_1076 PF01593 Flavin containing amine oxidoreductase BN112_1077 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BN112_1079 PF01061 ABC-2 type transporter BN112_1080 PF00005 ABC transporter BN112_1084 PF02424 ApbE family BN112_1085 PF00667 FAD binding domain BN112_1085 PF00258 Flavodoxin BN112_1085 PF00175 Oxidoreductase NAD-binding domain BN112_1087 PF07969 Amidohydrolase family BN112_1088 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1088 PF03466 LysR substrate binding domain BN112_1090 PF09370 Phosphoenolpyruvate hydrolase-like BN112_1093 PF03212 Pertactin BN112_1093 PF03797 Autotransporter beta-domain BN112_1095 PF03212 Pertactin BN112_1095 PF03797 Autotransporter beta-domain BN112_1096 PF02861 Clp amino terminal domain, pathogenicity island component BN112_1096 PF17871 AAA lid domain BN112_1096 PF10431 C-terminal, D2-small domain, of ClpB protein BN112_1096 PF07724 AAA domain (Cdc48 subfamily) BN112_1096 PF00004 ATPase family associated with various cellular activities (AAA) BN112_1097 PF13545 Crp-like helix-turn-helix domain BN112_1097 PF00027 Cyclic nucleotide-binding domain BN112_1100 PF00293 NUDIX domain BN112_1101 PF12843 Putative quorum-sensing-regulated virulence factor BN112_1103 PF04542 Sigma-70 region 2 BN112_1103 PF12680 SnoaL-like domain BN112_1103 PF08281 Sigma-70, region 4 BN112_1104 PF02627 Carboxymuconolactone decarboxylase family BN112_1109 PF00155 Aminotransferase class I and II BN112_1110 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_1111 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1112 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1113 PF00005 ABC transporter BN112_1117 PF04325 Protein of unknown function (DUF465) BN112_1118 PF07690 Major Facilitator Superfamily BN112_1119 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1119 PF03466 LysR substrate binding domain BN112_1120 PF00563 EAL domain BN112_1120 PF00990 Diguanylate cyclase, GGDEF domain BN112_1120 PF03707 Bacterial signalling protein N terminal repeat BN112_1121 PF01594 AI-2E family transporter BN112_1122 PF01061 ABC-2 type transporter BN112_1123 PF00005 ABC transporter BN112_1128 PF12801 4Fe-4S binding domain BN112_1128 PF13746 4Fe-4S dicluster domain BN112_1128 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase BN112_1129 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BN112_1129 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP BN112_1132 PF00115 Cytochrome C and Quinol oxidase polypeptide I BN112_1135 PF00202 Aminotransferase class-III BN112_1136 PF00155 Aminotransferase class I and II BN112_1138 PF13649 Methyltransferase domain BN112_1139 PF03788 LrgA family BN112_1140 PF04172 LrgB-like family BN112_1142 PF00463 Isocitrate lyase family BN112_1143 PF14489 QueF-like protein BN112_1143 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BN112_1145 PF01066 CDP-alcohol phosphatidyltransferase BN112_1146 PF08459 UvrC Helix-hairpin-helix N-terminal BN112_1146 PF02151 UvrB/uvrC motif BN112_1146 PF01541 GIY-YIG catalytic domain BN112_1147 PF00933 Glycosyl hydrolase family 3 N terminal domain BN112_1148 PF01648 4'-phosphopantetheinyl transferase superfamily BN112_1149 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BN112_1150 PF02321 Outer membrane efflux protein BN112_1151 PF00873 AcrB/AcrD/AcrF family BN112_1152 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BN112_1152 PF00529 HlyD membrane-fusion protein of T1SS BN112_1156 PF03459 TOBE domain BN112_1156 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1157 PF00005 ABC transporter BN112_1160 PF00080 Copper/zinc superoxide dismutase (SODC) BN112_1161 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1162 PF13193 AMP-binding enzyme C-terminal domain BN112_1162 PF00501 AMP-binding enzyme BN112_1163 PF00378 Enoyl-CoA hydratase/isomerase BN112_1165 PF07729 FCD domain BN112_1165 PF00392 Bacterial regulatory proteins, gntR family BN112_1167 PF00108 Thiolase, N-terminal domain BN112_1167 PF02803 Thiolase, C-terminal domain BN112_1168 PF01361 Tautomerase enzyme BN112_1169 PF00571 CBS domain BN112_1169 PF00005 ABC transporter BN112_1170 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1173 PF07690 Major Facilitator Superfamily BN112_1174 PF00830 Ribosomal L28 family BN112_1175 PF00471 Ribosomal protein L33 BN112_1176 PF01740 STAS domain BN112_1176 PF00916 Sulfate permease family BN112_1178 PF01047 MarR family BN112_1179 PF07690 Major Facilitator Superfamily BN112_1180 PF08264 Anticodon-binding domain of tRNA BN112_1180 PF09334 tRNA synthetases class I (M) BN112_1180 PF13603 Leucyl-tRNA synthetase, Domain 2 BN112_1180 PF00133 tRNA synthetases class I (I, L, M and V) BN112_1183 PF00171 Aldehyde dehydrogenase family BN112_1185 PF01425 Amidase BN112_1186 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_1186 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_1189 PF00575 S1 RNA binding domain BN112_1189 PF10150 Ribonuclease E/G family BN112_1190 PF01842 ACT domain BN112_1190 PF00800 Prephenate dehydratase BN112_1192 PF07690 Major Facilitator Superfamily BN112_1193 PF00664 ABC transporter transmembrane region BN112_1193 PF00005 ABC transporter BN112_1194 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BN112_1196 PF03692 Putative zinc- or iron-chelating domain BN112_1199 PF00884 Sulfatase BN112_1200 PF13439 Glycosyltransferase Family 4 BN112_1200 PF00534 Glycosyl transferases group 1 BN112_1201 PF00535 Glycosyl transferase family 2 BN112_1202 PF01522 Polysaccharide deacetylase BN112_1203 PF13439 Glycosyltransferase Family 4 BN112_1203 PF00534 Glycosyl transferases group 1 BN112_1204 PF01336 OB-fold nucleic acid binding domain BN112_1204 PF14579 Helix-hairpin-helix motif BN112_1204 PF07733 Bacterial DNA polymerase III alpha NTPase domain BN112_1204 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BN112_1204 PF02811 PHP domain BN112_1206 PF11898 Domain of unknown function (DUF3418) BN112_1206 PF04408 Helicase associated domain (HA2) BN112_1206 PF00271 Helicase conserved C-terminal domain BN112_1206 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BN112_1206 PF00270 DEAD/DEAH box helicase BN112_1207 PF00696 Amino acid kinase family BN112_1207 PF00583 Acetyltransferase (GNAT) family BN112_1208 PF04362 Bacterial Fe(2+) trafficking BN112_1209 PF05506 Domain of unknown function (DUF756) BN112_1209 PF04185 Phosphoesterase family BN112_1210 PF01895 PhoU domain BN112_1211 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BN112_1212 PF18158 Adaptive response protein AidB N-terminal domain BN112_1212 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_1212 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_1213 PF02646 RmuC family BN112_1215 PF02245 Methylpurine-DNA glycosylase (MPG) BN112_1217 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1218 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1219 PF00005 ABC transporter BN112_1219 PF08402 TOBE domain BN112_1220 PF13416 Bacterial extracellular solute-binding protein BN112_1226 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BN112_1226 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_1227 PF16970 Type-1 fimbrial protein, A BN112_1228 PF16970 Type-1 fimbrial protein, A BN112_1229 PF16970 Type-1 fimbrial protein, A BN112_1230 PF16970 Type-1 fimbrial protein, A BN112_1231 PF00501 AMP-binding enzyme BN112_1231 PF14535 AMP-binding enzyme C-terminal domain BN112_1232 PF03061 Thioesterase superfamily BN112_1233 PF00378 Enoyl-CoA hydratase/isomerase BN112_1234 PF00171 Aldehyde dehydrogenase family BN112_1235 PF00970 Oxidoreductase FAD-binding domain BN112_1235 PF00175 Oxidoreductase NAD-binding domain BN112_1235 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_1236 PF01883 Iron-sulfur cluster assembly protein BN112_1237 PF05138 Phenylacetic acid catabolic protein BN112_1238 PF06243 Phenylacetic acid degradation B BN112_1239 PF05138 Phenylacetic acid catabolic protein BN112_1240 PF08223 PaaX-like protein C-terminal domain BN112_1240 PF07848 PaaX-like protein BN112_1241 PF03853 YjeF-related protein N-terminus BN112_1242 PF00929 Exonuclease BN112_1243 PF01435 Peptidase family M48 BN112_1244 PF03193 RsgA GTPase BN112_1245 PF00248 Aldo/keto reductase family BN112_1246 PF00293 NUDIX domain BN112_1247 PF01245 Ribosomal protein L19 BN112_1250 PF04055 Radical SAM superfamily BN112_1251 PF00009 Elongation factor Tu GTP binding domain BN112_1252 PF01507 Phosphoadenosine phosphosulfate reductase family BN112_1253 PF01507 Phosphoadenosine phosphosulfate reductase family BN112_1254 PF17850 CysA C-terminal regulatory domain BN112_1254 PF12857 TOBE-like domain BN112_1254 PF00005 ABC transporter BN112_1255 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1256 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1258 PF00578 AhpC/TSA family BN112_1258 PF10417 C-terminal domain of 1-Cys peroxiredoxin BN112_1259 PF12806 Acetyl-CoA dehydrogenase C-terminal like BN112_1259 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_1259 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_1259 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_1260 PF00766 Electron transfer flavoprotein FAD-binding domain BN112_1260 PF01012 Electron transfer flavoprotein domain BN112_1261 PF01012 Electron transfer flavoprotein domain BN112_1262 PF00850 Histone deacetylase domain BN112_1263 PF13406 Transglycosylase SLT domain BN112_1264 PF00291 Pyridoxal-phosphate dependent enzyme BN112_1265 PF10531 SLBB domain BN112_1266 PF01370 NAD dependent epimerase/dehydratase family BN112_1267 PF00294 pfkB family carbohydrate kinase BN112_1268 PF18073 Rubredoxin metal binding domain BN112_1270 PF00216 Bacterial DNA-binding protein BN112_1271 PF00575 S1 RNA binding domain BN112_1272 PF02224 Cytidylate kinase BN112_1273 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BN112_1274 PF02153 Prephenate dehydrogenase BN112_1275 PF00800 Prephenate dehydratase BN112_1275 PF01842 ACT domain BN112_1275 PF01817 Chorismate mutase type II BN112_1276 PF00266 Aminotransferase class-V BN112_1277 PF00521 DNA gyrase/topoisomerase IV, subunit A BN112_1277 PF03989 DNA gyrase C-terminal domain, beta-propeller BN112_1278 PF00691 OmpA family BN112_1280 PF13419 Haloacid dehalogenase-like hydrolase BN112_1281 PF07690 Major Facilitator Superfamily BN112_1282 PF02586 SOS response associated peptidase (SRAP) BN112_1323 PF03837 RecT family BN112_1332 PF00589 Phage integrase family BN112_1333 PF00155 Aminotransferase class I and II BN112_1334 PF00132 Bacterial transferase hexapeptide (six repeats) BN112_1334 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BN112_1334 PF14602 Hexapeptide repeat of succinyl-transferase BN112_1335 PF01546 Peptidase family M20/M25/M40 BN112_1335 PF07687 Peptidase dimerisation domain BN112_1336 PF05175 Methyltransferase small domain BN112_1337 PF00005 ABC transporter BN112_1337 PF12848 ABC transporter BN112_1338 PF07715 TonB-dependent Receptor Plug Domain BN112_1339 PF00580 UvrD/REP helicase N-terminal domain BN112_1339 PF13361 UvrD-like helicase C-terminal domain BN112_1342 PF01189 16S rRNA methyltransferase RsmB/F BN112_1342 PF01029 NusB family BN112_1343 PF00551 Formyl transferase BN112_1344 PF01687 Riboflavin kinase BN112_1344 PF06574 FAD synthetase BN112_1345 PF08264 Anticodon-binding domain of tRNA BN112_1345 PF00133 tRNA synthetases class I (I, L, M and V) BN112_1345 PF06827 Zinc finger found in FPG and IleRS BN112_1346 PF01252 Signal peptidase (SPase) II BN112_1347 PF04127 DNA / pantothenate metabolism flavoprotein BN112_1347 PF02441 Flavoprotein BN112_1349 PF01037 Lrp/AsnC ligand binding domain BN112_1351 PF09335 SNARE associated Golgi protein BN112_1353 PF00692 dUTPase BN112_1354 PF00005 ABC transporter BN112_1355 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1356 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1357 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_1359 PF02423 Ornithine cyclodeaminase/mu-crystallin family BN112_1360 PF02566 OsmC-like protein BN112_1362 PF05524 PEP-utilising enzyme, N-terminal BN112_1362 PF02896 PEP-utilising enzyme, TIM barrel domain BN112_1362 PF00391 PEP-utilising enzyme, mobile domain BN112_1363 PF00381 PTS HPr component phosphorylation site BN112_1365 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BN112_1365 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BN112_1366 PF05198 Translation initiation factor IF-3, N-terminal domain BN112_1366 PF00707 Translation initiation factor IF-3, C-terminal domain BN112_1367 PF03129 Anticodon binding domain BN112_1367 PF02824 TGS domain BN112_1367 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BN112_1367 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BN112_1368 PF00196 Bacterial regulatory proteins, luxR family BN112_1370 PF04055 Radical SAM superfamily BN112_1370 PF06969 HemN C-terminal domain BN112_1372 PF00230 Major intrinsic protein BN112_1374 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1378 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BN112_1379 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_1381 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_1382 PF01416 tRNA pseudouridine synthase BN112_1384 PF02774 Semialdehyde dehydrogenase, dimerisation domain BN112_1384 PF01118 Semialdehyde dehydrogenase, NAD binding domain BN112_1385 PF00180 Isocitrate/isopropylmalate dehydrogenase BN112_1386 PF00694 Aconitase C-terminal domain BN112_1387 PF00330 Aconitase family (aconitate hydratase) BN112_1388 PF12849 PBP superfamily domain BN112_1389 PF00005 ABC transporter BN112_1390 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1395 PF13247 4Fe-4S dicluster domain BN112_1396 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BN112_1396 PF00384 Molybdopterin oxidoreductase BN112_1396 PF01568 Molydopterin dinucleotide binding domain BN112_1401 PF10609 NUBPL iron-transfer P-loop NTPase BN112_1402 PF12804 MobA-like NTP transferase domain BN112_1403 PF03454 MoeA C-terminal region (domain IV) BN112_1403 PF00994 Probable molybdopterin binding domain BN112_1403 PF03453 MoeA N-terminal region (domain I and II) BN112_1404 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BN112_1405 PF01435 Peptidase family M48 BN112_1406 PF01264 Chorismate synthase BN112_1407 PF00563 EAL domain BN112_1407 PF03707 Bacterial signalling protein N terminal repeat BN112_1407 PF00990 Diguanylate cyclase, GGDEF domain BN112_1407 PF13188 PAS domain BN112_1408 PF00512 His Kinase A (phospho-acceptor) domain BN112_1408 PF07689 KaiB domain BN112_1408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_1409 PF00486 Transcriptional regulatory protein, C terminal BN112_1409 PF00072 Response regulator receiver domain BN112_1410 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BN112_1412 PF03631 Virulence factor BrkB BN112_1414 PF01207 Dihydrouridine synthase (Dus) BN112_1415 PF01636 Phosphotransferase enzyme family BN112_1419 PF00437 Type II/IV secretion system protein BN112_1420 PF13629 Pilus formation protein N terminal region BN112_1420 PF00263 Bacterial type II and III secretion system protein BN112_1420 PF04972 BON domain BN112_1427 PF01557 Fumarylacetoacetate (FAA) hydrolase family BN112_1428 PF00719 Inorganic pyrophosphatase BN112_1432 PF03900 Porphobilinogen deaminase, C-terminal domain BN112_1432 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BN112_1433 PF03741 Integral membrane protein TerC family BN112_1434 PF03741 Integral membrane protein TerC family BN112_1435 PF00549 CoA-ligase BN112_1435 PF02629 CoA binding domain BN112_1436 PF00549 CoA-ligase BN112_1436 PF08442 ATP-grasp domain BN112_1438 PF08267 Cobalamin-independent synthase, N-terminal domain BN112_1438 PF01717 Cobalamin-independent synthase, Catalytic domain BN112_1439 PF03466 LysR substrate binding domain BN112_1439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1440 PF02631 RecX family BN112_1441 PF00154 recA bacterial DNA recombination protein BN112_1442 PF00072 Response regulator receiver domain BN112_1442 PF00486 Transcriptional regulatory protein, C terminal BN112_1443 PF00512 His Kinase A (phospho-acceptor) domain BN112_1443 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_1444 PF00083 Sugar (and other) transporter BN112_1444 PF08946 Osmosensory transporter coiled coil BN112_1445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_1445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_1445 PF00378 Enoyl-CoA hydratase/isomerase BN112_1446 PF08402 TOBE domain BN112_1446 PF00005 ABC transporter BN112_1447 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1449 PF00106 short chain dehydrogenase BN112_1453 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1453 PF03466 LysR substrate binding domain BN112_1454 PF02515 CoA-transferase family III BN112_1456 PF04381 Putative exonuclease, RdgC BN112_1457 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BN112_1457 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BN112_1461 PF04231 Endonuclease I BN112_1463 PF00392 Bacterial regulatory proteins, gntR family BN112_1463 PF00155 Aminotransferase class I and II BN112_1466 PF01037 Lrp/AsnC ligand binding domain BN112_1471 PF13847 Methyltransferase domain BN112_1475 PF00216 Bacterial DNA-binding protein BN112_1476 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BN112_1476 PF03484 tRNA synthetase B5 domain BN112_1476 PF03483 B3/4 domain BN112_1476 PF01588 Putative tRNA binding domain BN112_1476 PF03147 Ferredoxin-fold anticodon binding domain BN112_1477 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BN112_1477 PF01409 tRNA synthetases class II core domain (F) BN112_1478 PF00453 Ribosomal protein L20 BN112_1479 PF01632 Ribosomal protein L35 BN112_1480 PF01078 Magnesium chelatase, subunit ChlI BN112_1480 PF13335 Magnesium chelatase, subunit ChlI C-terminal BN112_1481 PF04380 Membrane fusogenic activity BN112_1482 PF00543 Nitrogen regulatory protein P-II BN112_1483 PF00909 Ammonium Transporter Family BN112_1485 PF00440 Bacterial regulatory proteins, tetR family BN112_1486 PF07690 Major Facilitator Superfamily BN112_1487 PF00005 ABC transporter BN112_1488 PF00005 ABC transporter BN112_1488 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_1489 PF11862 Domain of unknown function (DUF3382) BN112_1489 PF02653 Branched-chain amino acid transport system / permease component BN112_1490 PF02653 Branched-chain amino acid transport system / permease component BN112_1491 PF13458 Periplasmic binding protein BN112_1492 PF00171 Aldehyde dehydrogenase family BN112_1492 PF01619 Proline dehydrogenase BN112_1492 PF14850 DNA-binding domain of Proline dehydrogenase BN112_1492 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BN112_1494 PF02470 MlaD protein BN112_1495 PF04403 Paraquat-inducible protein A BN112_1496 PF02861 Clp amino terminal domain, pathogenicity island component BN112_1496 PF00004 ATPase family associated with various cellular activities (AAA) BN112_1496 PF07724 AAA domain (Cdc48 subfamily) BN112_1496 PF17871 AAA lid domain BN112_1496 PF10431 C-terminal, D2-small domain, of ClpB protein BN112_1497 PF00905 Penicillin binding protein transpeptidase domain BN112_1497 PF00912 Transglycosylase BN112_1497 PF06832 Penicillin-Binding Protein C-terminus Family BN112_1498 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BN112_1498 PF00207 Alpha-2-macroglobulin family BN112_1498 PF01835 MG2 domain BN112_1498 PF07703 Alpha-2-macroglobulin bait region domain BN112_1498 PF17962 Bacterial macroglobulin domain 6 BN112_1498 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BN112_1498 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BN112_1498 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BN112_1499 PF02617 ATP-dependent Clp protease adaptor protein ClpS BN112_1500 PF00313 'Cold-shock' DNA-binding domain BN112_1502 PF00108 Thiolase, N-terminal domain BN112_1502 PF02803 Thiolase, C-terminal domain BN112_1503 PF00654 Voltage gated chloride channel BN112_1504 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BN112_1504 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BN112_1505 PF02601 Exonuclease VII, large subunit BN112_1505 PF13742 OB-fold nucleic acid binding domain BN112_1506 PF01618 MotA/TolQ/ExbB proton channel family BN112_1507 PF02472 Biopolymer transport protein ExbD/TolR BN112_1508 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BN112_1509 PF03966 Trm112p-like protein BN112_1510 PF02348 Cytidylyltransferase BN112_1511 PF05191 Adenylate kinase, active site lid BN112_1512 PF00106 short chain dehydrogenase BN112_1513 PF03023 Lipid II flippase MurJ BN112_1515 PF01649 Ribosomal protein S20 BN112_1516 PF03328 HpcH/HpaI aldolase/citrate lyase family BN112_1517 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1518 PF00920 Dehydratase family BN112_1519 PF02615 Malate/L-lactate dehydrogenase BN112_1520 PF07729 FCD domain BN112_1520 PF00392 Bacterial regulatory proteins, gntR family BN112_1523 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BN112_1523 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BN112_1525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1525 PF03466 LysR substrate binding domain BN112_1527 PF00202 Aminotransferase class-III BN112_1528 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BN112_1528 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BN112_1529 PF00764 Arginosuccinate synthase BN112_1530 PF02705 K+ potassium transporter BN112_1531 PF08521 Two-component sensor kinase N-terminal BN112_1531 PF00512 His Kinase A (phospho-acceptor) domain BN112_1531 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_1532 PF00072 Response regulator receiver domain BN112_1532 PF00486 Transcriptional regulatory protein, C terminal BN112_1533 PF02472 Biopolymer transport protein ExbD/TolR BN112_1534 PF01618 MotA/TolQ/ExbB proton channel family BN112_1536 PF00216 Bacterial DNA-binding protein BN112_1537 PF13640 2OG-Fe(II) oxygenase superfamily BN112_1537 PF18331 PKHD-type hydroxylase C-terminal domain BN112_1538 PF01053 Cys/Met metabolism PLP-dependent enzyme BN112_1539 PF00588 SpoU rRNA Methylase family BN112_1539 PF08032 RNA 2'-O ribose methyltransferase substrate binding BN112_1540 PF08206 Ribonuclease B OB domain BN112_1540 PF00773 RNB domain BN112_1540 PF00575 S1 RNA binding domain BN112_1540 PF08461 Ribonuclease R winged-helix domain BN112_1540 PF17876 Cold shock domain BN112_1542 PF13673 Acetyltransferase (GNAT) domain BN112_1543 PF03547 Membrane transport protein BN112_1544 PF04143 Sulphur transport BN112_1545 PF01645 Conserved region in glutamate synthase BN112_1546 PF13396 Phospholipase_D-nuclease N-terminal BN112_1546 PF13091 PLD-like domain BN112_1548 PF10017 Histidine-specific methyltransferase, SAM-dependent BN112_1549 PF12867 DinB superfamily BN112_1549 PF03781 Sulfatase-modifying factor enzyme 1 BN112_1554 PF00072 Response regulator receiver domain BN112_1555 PF00990 Diguanylate cyclase, GGDEF domain BN112_1557 PF01594 AI-2E family transporter BN112_1561 PF01322 Cytochrome C' BN112_1562 PF00206 Lyase BN112_1562 PF08328 Adenylosuccinate lyase C-terminal BN112_1563 PF13417 Glutathione S-transferase, N-terminal domain BN112_1563 PF00043 Glutathione S-transferase, C-terminal domain BN112_1564 PF01925 Sulfite exporter TauE/SafE BN112_1566 PF03466 LysR substrate binding domain BN112_1566 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1567 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1569 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BN112_1569 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BN112_1570 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BN112_1571 PF02233 NAD(P) transhydrogenase beta subunit BN112_1573 PF07715 TonB-dependent Receptor Plug Domain BN112_1573 PF00593 TonB dependent receptor BN112_1574 PF00756 Putative esterase BN112_1575 PF02754 Cysteine-rich domain BN112_1575 PF13183 4Fe-4S dicluster domain BN112_1576 PF01565 FAD binding domain BN112_1577 PF02913 FAD linked oxidases, C-terminal domain BN112_1577 PF01565 FAD binding domain BN112_1578 PF01565 FAD binding domain BN112_1578 PF02913 FAD linked oxidases, C-terminal domain BN112_1579 PF13018 Extended Signal Peptide of Type V secretion system BN112_1579 PF13018 Extended Signal Peptide of Type V secretion system BN112_1579 PF05594 Haemagluttinin repeat BN112_1579 PF05860 haemagglutination activity domain BN112_1579 PF13332 Hemagglutinin repeat BN112_1579 PF05594 Haemagluttinin repeat BN112_1579 PF05860 haemagglutination activity domain BN112_1579 PF13332 Hemagglutinin repeat BN112_1580 PF00793 DAHP synthetase I family BN112_1581 PF01523 Putative modulator of DNA gyrase BN112_1582 PF00795 Carbon-nitrogen hydrolase BN112_1585 PF11940 Domain of unknown function (DUF3458) Ig-like fold BN112_1585 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BN112_1585 PF01433 Peptidase family M1 domain BN112_1586 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BN112_1588 PF00291 Pyridoxal-phosphate dependent enzyme BN112_1588 PF14821 Threonine synthase N terminus BN112_1589 PF03447 Homoserine dehydrogenase, NAD binding domain BN112_1589 PF01842 ACT domain BN112_1589 PF00742 Homoserine dehydrogenase BN112_1590 PF00155 Aminotransferase class I and II BN112_1591 PF04430 Protein of unknown function (DUF498/DUF598) BN112_1592 PF00578 AhpC/TSA family BN112_1593 PF02562 PhoH-like protein BN112_1593 PF13638 PIN domain BN112_1594 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BN112_1595 PF13593 SBF-like CPA transporter family (DUF4137) BN112_1596 PF00772 DnaB-like helicase N terminal domain BN112_1596 PF03796 DnaB-like helicase C terminal domain BN112_1598 PF01281 Ribosomal protein L9, N-terminal domain BN112_1598 PF03948 Ribosomal protein L9, C-terminal domain BN112_1599 PF01084 Ribosomal protein S18 BN112_1601 PF01250 Ribosomal protein S6 BN112_1602 PF02649 Type I GTP cyclohydrolase folE2 BN112_1603 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BN112_1603 PF02779 Transketolase, pyrimidine binding domain BN112_1603 PF02780 Transketolase, C-terminal domain BN112_1604 PF00348 Polyprenyl synthetase BN112_1605 PF02609 Exonuclease VII small subunit BN112_1607 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1614 PF13419 Haloacid dehalogenase-like hydrolase BN112_1615 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1616 PF00005 ABC transporter BN112_1616 PF08402 TOBE domain BN112_1617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1617 PF03466 LysR substrate binding domain BN112_1619 PF00581 Rhodanese-like domain BN112_1621 PF01435 Peptidase family M48 BN112_1622 PF08240 Alcohol dehydrogenase GroES-like domain BN112_1622 PF00107 Zinc-binding dehydrogenase BN112_1623 PF00892 EamA-like transporter family BN112_1625 PF01047 MarR family BN112_1626 PF02321 Outer membrane efflux protein BN112_1627 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BN112_1627 PF00529 HlyD membrane-fusion protein of T1SS BN112_1628 PF07690 Major Facilitator Superfamily BN112_1629 PF00180 Isocitrate/isopropylmalate dehydrogenase BN112_1630 PF00392 Bacterial regulatory proteins, gntR family BN112_1630 PF00155 Aminotransferase class I and II BN112_1631 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_1632 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1633 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1633 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_1634 PF00005 ABC transporter BN112_1634 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_1635 PF00202 Aminotransferase class-III BN112_1636 PF07883 Cupin domain BN112_1637 PF00850 Histone deacetylase domain BN112_1638 PF07687 Peptidase dimerisation domain BN112_1638 PF01546 Peptidase family M20/M25/M40 BN112_1640 PF00171 Aldehyde dehydrogenase family BN112_1641 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BN112_1642 PF00202 Aminotransferase class-III BN112_1643 PF05872 Bacterial protein of unknown function (DUF853) BN112_1644 PF01709 Transcriptional regulator BN112_1645 PF02844 Phosphoribosylglycinamide synthetase, N domain BN112_1645 PF02843 Phosphoribosylglycinamide synthetase, C domain BN112_1645 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BN112_1646 PF01218 Coproporphyrinogen III oxidase BN112_1647 PF01467 Cytidylyltransferase-like BN112_1649 PF02590 Predicted SPOUT methyltransferase BN112_1650 PF02545 Maf-like protein BN112_1651 PF03797 Autotransporter beta-domain BN112_1651 PF03212 Pertactin BN112_1652 PF03466 LysR substrate binding domain BN112_1652 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1653 PF01758 Sodium Bile acid symporter family BN112_1654 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BN112_1654 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BN112_1655 PF03466 LysR substrate binding domain BN112_1655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1656 PF00924 Mechanosensitive ion channel BN112_1656 PF12794 Mechanosensitive ion channel inner membrane domain 1 BN112_1656 PF12795 Mechanosensitive ion channel porin domain BN112_1659 PF01925 Sulfite exporter TauE/SafE BN112_1660 PF00892 EamA-like transporter family BN112_1665 PF06434 Aconitate hydratase 2 N-terminus BN112_1665 PF11791 Aconitate B N-terminal domain BN112_1665 PF00330 Aconitase family (aconitate hydratase) BN112_1667 PF00691 OmpA family BN112_1669 PF00593 TonB dependent receptor BN112_1669 PF07715 TonB-dependent Receptor Plug Domain BN112_1671 PF00694 Aconitase C-terminal domain BN112_1671 PF00330 Aconitase family (aconitate hydratase) BN112_1672 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BN112_1675 PF09285 Elongation factor P, C-terminal BN112_1675 PF08207 Elongation factor P (EF-P) KOW-like domain BN112_1675 PF01132 Elongation factor P (EF-P) OB domain BN112_1676 PF00034 Cytochrome c BN112_1678 PF04542 Sigma-70 region 2 BN112_1678 PF08281 Sigma-70, region 4 BN112_1681 PF00072 Response regulator receiver domain BN112_1681 PF00158 Sigma-54 interaction domain BN112_1681 PF02954 Bacterial regulatory protein, Fis family BN112_1687 PF00437 Type II/IV secretion system protein BN112_1689 PF04972 BON domain BN112_1689 PF13629 Pilus formation protein N terminal region BN112_1689 PF00263 Bacterial type II and III secretion system protein BN112_1695 PF00563 EAL domain BN112_1695 PF03707 Bacterial signalling protein N terminal repeat BN112_1695 PF00990 Diguanylate cyclase, GGDEF domain BN112_1696 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BN112_1696 PF08479 POTRA domain, ShlB-type BN112_1698 PF01047 MarR family BN112_1699 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_1699 PF00005 ABC transporter BN112_1700 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1700 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_1701 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1702 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_1704 PF01544 CorA-like Mg2+ transporter protein BN112_1705 PF13361 UvrD-like helicase C-terminal domain BN112_1705 PF00580 UvrD/REP helicase N-terminal domain BN112_1707 PF00392 Bacterial regulatory proteins, gntR family BN112_1707 PF00155 Aminotransferase class I and II BN112_1709 PF00171 Aldehyde dehydrogenase family BN112_1710 PF00459 Inositol monophosphatase family BN112_1711 PF02146 Sir2 family BN112_1713 PF00132 Bacterial transferase hexapeptide (six repeats) BN112_1714 PF00342 Phosphoglucose isomerase BN112_1715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BN112_1715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BN112_1715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BN112_1715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BN112_1717 PF00196 Bacterial regulatory proteins, luxR family BN112_1717 PF00072 Response regulator receiver domain BN112_1719 PF09317 Domain of unknown function (DUF1974) BN112_1719 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_1719 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_1719 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_1720 PF00108 Thiolase, N-terminal domain BN112_1720 PF02803 Thiolase, C-terminal domain BN112_1721 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_1721 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_1721 PF00378 Enoyl-CoA hydratase/isomerase BN112_1723 PF00378 Enoyl-CoA hydratase/isomerase BN112_1723 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_1723 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_1724 PF02803 Thiolase, C-terminal domain BN112_1724 PF00108 Thiolase, N-terminal domain BN112_1726 PF13193 AMP-binding enzyme C-terminal domain BN112_1726 PF00501 AMP-binding enzyme BN112_1727 PF00884 Sulfatase BN112_1727 PF16347 Domain of unknown function (DUF4976) BN112_1730 PF00593 TonB dependent receptor BN112_1730 PF07715 TonB-dependent Receptor Plug Domain BN112_1731 PF00175 Oxidoreductase NAD-binding domain BN112_1731 PF00042 Globin BN112_1731 PF00970 Oxidoreductase FAD-binding domain BN112_1732 PF00034 Cytochrome c BN112_1732 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BN112_1732 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BN112_1733 PF00857 Isochorismatase family BN112_1735 PF00561 alpha/beta hydrolase fold BN112_1736 PF17645 Arylmalonate decarboxylase BN112_1737 PF01494 FAD binding domain BN112_1738 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_1738 PF01799 [2Fe-2S] binding domain BN112_1739 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BN112_1739 PF00034 Cytochrome c BN112_1739 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BN112_1740 PF00005 ABC transporter BN112_1741 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_1741 PF00005 ABC transporter BN112_1743 PF13458 Periplasmic binding protein BN112_1744 PF12802 MarR family BN112_1747 PF14883 Hypothetical glycosyl hydrolase family 13 BN112_1747 PF01522 Polysaccharide deacetylase BN112_1748 PF00535 Glycosyl transferase family 2 BN112_1750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BN112_1755 PF01042 Endoribonuclease L-PSP BN112_1756 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1757 PF13380 CoA binding domain BN112_1758 PF09339 IclR helix-turn-helix domain BN112_1758 PF01614 Bacterial transcriptional regulator BN112_1759 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_1759 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BN112_1760 PF08402 TOBE domain BN112_1760 PF00005 ABC transporter BN112_1761 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1762 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1765 PF03466 LysR substrate binding domain BN112_1768 PF01958 Domain of unknown function DUF108 BN112_1768 PF03447 Homoserine dehydrogenase, NAD binding domain BN112_1769 PF00561 alpha/beta hydrolase fold BN112_1770 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_1771 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_1772 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_1772 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BN112_1773 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_1773 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_1776 PF13840 ACT domain BN112_1776 PF00696 Amino acid kinase family BN112_1776 PF01842 ACT domain BN112_1777 PF01171 PP-loop family BN112_1777 PF09179 TilS substrate binding domain BN112_1778 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BN112_1779 PF00730 HhH-GPD superfamily base excision DNA repair protein BN112_1779 PF06029 AlkA N-terminal domain BN112_1779 PF02805 Metal binding domain of Ada BN112_1779 PF12833 Helix-turn-helix domain BN112_1780 PF01406 tRNA synthetases class I (C) catalytic domain BN112_1780 PF09190 DALR domain BN112_1782 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BN112_1783 PF00149 Calcineurin-like phosphoesterase BN112_1784 PF02673 Bacitracin resistance protein BacA BN112_1785 PF03741 Integral membrane protein TerC family BN112_1785 PF03471 Transporter associated domain BN112_1786 PF00459 Inositol monophosphatase family BN112_1787 PF00588 SpoU rRNA Methylase family BN112_1788 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1790 PF00924 Mechanosensitive ion channel BN112_1790 PF05552 Conserved TM helix BN112_1796 PF03358 NADPH-dependent FMN reductase BN112_1797 PF07311 Dodecin BN112_1798 PF05190 MutS family domain IV BN112_1798 PF05192 MutS domain III BN112_1798 PF05188 MutS domain II BN112_1798 PF01624 MutS domain I BN112_1798 PF00488 MutS domain V BN112_1799 PF08007 Cupin superfamily protein BN112_1800 PF16970 Type-1 fimbrial protein, A BN112_1801 PF06804 NlpB/DapX lipoprotein BN112_1802 PF00701 Dihydrodipicolinate synthetase family BN112_1803 PF02163 Peptidase family M50 BN112_1804 PF01300 Telomere recombination BN112_1805 PF04228 Putative neutral zinc metallopeptidase BN112_1809 PF13396 Phospholipase_D-nuclease N-terminal BN112_1809 PF13091 PLD-like domain BN112_1810 PF01740 STAS domain BN112_1811 PF13581 Histidine kinase-like ATPase domain BN112_1812 PF01168 Alanine racemase, N-terminal domain BN112_1812 PF00842 Alanine racemase, C-terminal domain BN112_1814 PF07228 Stage II sporulation protein E (SpoIIE) BN112_1814 PF00672 HAMP domain BN112_1818 PF08281 Sigma-70, region 4 BN112_1818 PF04542 Sigma-70 region 2 BN112_1819 PF03958 Bacterial type II/III secretion system short domain BN112_1819 PF00263 Bacterial type II and III secretion system protein BN112_1821 PF01312 FlhB HrpN YscU SpaS Family BN112_1822 PF01311 Bacterial export proteins, family 1 BN112_1823 PF01313 Bacterial export proteins, family 3 BN112_1824 PF00813 FliP family BN112_1825 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BN112_1828 PF02874 ATP synthase alpha/beta family, beta-barrel domain BN112_1828 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BN112_1828 PF18269 T3SS EscN ATPase C-terminal domain BN112_1829 PF02108 Flagellar assembly protein FliH BN112_1831 PF01514 Secretory protein of YscJ/FliF family BN112_1844 PF00771 FHIPEP family BN112_1849 PF03466 LysR substrate binding domain BN112_1849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1850 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BN112_1851 PF01042 Endoribonuclease L-PSP BN112_1857 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1860 PF00005 ABC transporter BN112_1861 PF09383 NIL domain BN112_1861 PF00005 ABC transporter BN112_1863 PF02653 Branched-chain amino acid transport system / permease component BN112_1865 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BN112_1865 PF00355 Rieske [2Fe-2S] domain BN112_1866 PF13577 SnoaL-like domain BN112_1868 PF02423 Ornithine cyclodeaminase/mu-crystallin family BN112_1869 PF01557 Fumarylacetoacetate (FAA) hydrolase family BN112_1870 PF00355 Rieske [2Fe-2S] domain BN112_1872 PF03466 LysR substrate binding domain BN112_1872 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1873 PF01557 Fumarylacetoacetate (FAA) hydrolase family BN112_1875 PF14759 Reductase C-terminal BN112_1875 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_1877 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_1879 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_1881 PF13607 Succinyl-CoA ligase like flavodoxin domain BN112_1881 PF13380 CoA binding domain BN112_1882 PF00364 Biotin-requiring enzyme BN112_1883 PF01039 Carboxyl transferase domain BN112_1884 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BN112_1884 PF00289 Biotin carboxylase, N-terminal domain BN112_1884 PF02785 Biotin carboxylase C-terminal domain BN112_1885 PF00392 Bacterial regulatory proteins, gntR family BN112_1885 PF07702 UTRA domain BN112_1889 PF00682 HMGL-like BN112_1889 PF02436 Conserved carboxylase domain BN112_1889 PF00364 Biotin-requiring enzyme BN112_1890 PF00364 Biotin-requiring enzyme BN112_1892 PF01966 HD domain BN112_1893 PF00171 Aldehyde dehydrogenase family BN112_1895 PF07317 Flagellar regulator YcgR BN112_1895 PF07238 PilZ domain BN112_1899 PF05724 Thiopurine S-methyltransferase (TPMT) BN112_1900 PF00664 ABC transporter transmembrane region BN112_1900 PF00005 ABC transporter BN112_1902 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BN112_1905 PF13458 Periplasmic binding protein BN112_1906 PF02653 Branched-chain amino acid transport system / permease component BN112_1908 PF00005 ABC transporter BN112_1908 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_1909 PF00005 ABC transporter BN112_1910 PF00795 Carbon-nitrogen hydrolase BN112_1911 PF00384 Molybdopterin oxidoreductase BN112_1911 PF01568 Molydopterin dinucleotide binding domain BN112_1912 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1914 PF01053 Cys/Met metabolism PLP-dependent enzyme BN112_1917 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_1917 PF03466 LysR substrate binding domain BN112_1918 PF06826 Predicted Permease Membrane Region BN112_1919 PF05067 Manganese containing catalase BN112_1920 PF00106 short chain dehydrogenase BN112_1923 PF00483 Nucleotidyl transferase BN112_1925 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1926 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1928 PF03328 HpcH/HpaI aldolase/citrate lyase family BN112_1929 PF17645 Arylmalonate decarboxylase BN112_1930 PF01546 Peptidase family M20/M25/M40 BN112_1930 PF07687 Peptidase dimerisation domain BN112_1931 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BN112_1931 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BN112_1932 PF00155 Aminotransferase class I and II BN112_1934 PF00005 ABC transporter BN112_1935 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1936 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1937 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_1938 PF01546 Peptidase family M20/M25/M40 BN112_1938 PF07687 Peptidase dimerisation domain BN112_1939 PF00291 Pyridoxal-phosphate dependent enzyme BN112_1940 PF01037 Lrp/AsnC ligand binding domain BN112_1941 PF00392 Bacterial regulatory proteins, gntR family BN112_1941 PF07729 FCD domain BN112_1942 PF01557 Fumarylacetoacetate (FAA) hydrolase family BN112_1944 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_1945 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BN112_1946 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_1951 PF01266 FAD dependent oxidoreductase BN112_1952 PF01425 Amidase BN112_1953 PF00005 ABC transporter BN112_1954 PF00005 ABC transporter BN112_1954 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_1955 PF11862 Domain of unknown function (DUF3382) BN112_1955 PF02653 Branched-chain amino acid transport system / permease component BN112_1956 PF02653 Branched-chain amino acid transport system / permease component BN112_1958 PF02515 CoA-transferase family III BN112_1959 PF00378 Enoyl-CoA hydratase/isomerase BN112_1960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_1960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_1961 PF00743 Flavin-binding monooxygenase-like BN112_1963 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1967 PF13458 Periplasmic binding protein BN112_1968 PF02653 Branched-chain amino acid transport system / permease component BN112_1970 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_1970 PF00005 ABC transporter BN112_1971 PF00005 ABC transporter BN112_1974 PF02653 Branched-chain amino acid transport system / permease component BN112_1975 PF00005 ABC transporter BN112_1976 PF00005 ABC transporter BN112_1976 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_1979 PF00171 Aldehyde dehydrogenase family BN112_1980 PF00465 Iron-containing alcohol dehydrogenase BN112_1983 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BN112_1983 PF00034 Cytochrome c BN112_1984 PF05199 GMC oxidoreductase BN112_1984 PF00732 GMC oxidoreductase BN112_1985 PF13618 Gluconate 2-dehydrogenase subunit 3 BN112_1986 PF01381 Helix-turn-helix BN112_1987 PF01266 FAD dependent oxidoreductase BN112_1989 PF03401 Tripartite tricarboxylate transporter family receptor BN112_1991 PF00005 ABC transporter BN112_1992 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1993 PF00528 Binding-protein-dependent transport system inner membrane component BN112_1994 PF12849 PBP superfamily domain BN112_1995 PF13089 Polyphosphate kinase N-terminal domain BN112_1995 PF17941 Polyphosphate kinase C-terminal domain 1 BN112_1995 PF13090 Polyphosphate kinase C-terminal domain 2 BN112_1995 PF02503 Polyphosphate kinase middle domain BN112_1996 PF02541 Ppx/GppA phosphatase family BN112_1998 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BN112_1998 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BN112_1998 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BN112_1998 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BN112_1999 PF00809 Pterin binding enzyme BN112_2000 PF00004 ATPase family associated with various cellular activities (AAA) BN112_2000 PF01434 Peptidase family M41 BN112_2000 PF06480 FtsH Extracellular BN112_2000 PF17862 AAA+ lid domain BN112_2001 PF01728 FtsJ-like methyltransferase BN112_2002 PF01985 CRS1 / YhbY (CRM) domain BN112_2003 PF03449 Transcription elongation factor, N-terminal BN112_2003 PF01272 Transcription elongation factor, GreA/GreB, C-term BN112_2004 PF00672 HAMP domain BN112_2004 PF02203 Tar ligand binding domain homologue BN112_2004 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BN112_2005 PF00860 Permease family BN112_2007 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2008 PF00005 ABC transporter BN112_2008 PF08402 TOBE domain BN112_2009 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2009 PF03466 LysR substrate binding domain BN112_2010 PF00300 Histidine phosphatase superfamily (branch 1) BN112_2011 PF00106 short chain dehydrogenase BN112_2012 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BN112_2012 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BN112_2012 PF02142 MGS-like domain BN112_2013 PF00117 Glutamine amidotransferase class-I BN112_2013 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BN112_2014 PF00923 Transaldolase/Fructose-6-phosphate aldolase BN112_2015 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2016 PF00005 ABC transporter BN112_2018 PF02515 CoA-transferase family III BN112_2019 PF02132 RecR protein BN112_2019 PF13662 Toprim domain BN112_2020 PF02575 YbaB/EbfC DNA-binding family BN112_2021 PF12170 DNA polymerase III tau subunit V interacting with alpha BN112_2021 PF12169 DNA polymerase III subunits gamma and tau domain III BN112_2021 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BN112_2022 PF12705 PD-(D/E)XK nuclease superfamily BN112_2022 PF00580 UvrD/REP helicase N-terminal domain BN112_2022 PF13361 UvrD-like helicase C-terminal domain BN112_2024 PF07690 Major Facilitator Superfamily BN112_2026 PF00768 D-alanyl-D-alanine carboxypeptidase BN112_2028 PF01174 SNO glutamine amidotransferase family BN112_2029 PF04073 Aminoacyl-tRNA editing domain BN112_2030 PF02899 Phage integrase, N-terminal SAM-like domain BN112_2030 PF00589 Phage integrase family BN112_2031 PF03466 LysR substrate binding domain BN112_2031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2032 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_2032 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_2032 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_2033 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2033 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2033 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_2035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_2036 PF00005 ABC transporter BN112_2037 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2038 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_2039 PF00491 Arginase family BN112_2040 PF09339 IclR helix-turn-helix domain BN112_2040 PF01614 Bacterial transcriptional regulator BN112_2041 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_2042 PF01300 Telomere recombination BN112_2042 PF03481 Putative GTP-binding controlling metal-binding BN112_2043 PF02222 ATP-grasp domain BN112_2043 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BN112_2044 PF00731 AIR carboxylase BN112_2045 PF02600 Disulfide bond formation protein DsbB BN112_2047 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA BN112_2048 PF15723 Motility quorum-sensing regulator, toxin of MqsA BN112_2049 PF01259 SAICAR synthetase BN112_2051 PF01116 Fructose-bisphosphate aldolase class-II BN112_2054 PF03069 Acetamidase/Formamidase family BN112_2055 PF02293 AmiS/UreI family transporter BN112_2057 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BN112_2057 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BN112_2059 PF01176 Translation initiation factor 1A / IF-1 BN112_2061 PF01476 LysM domain BN112_2061 PF08525 Opacity-associated protein A N-terminal motif BN112_2061 PF01551 Peptidase family M23 BN112_2063 PF00994 Probable molybdopterin binding domain BN112_2064 PF01384 Phosphate transporter family BN112_2066 PF03591 AzlC protein BN112_2068 PF01556 DnaJ C terminal domain BN112_2068 PF00226 DnaJ domain BN112_2073 PF11339 Protein of unknown function (DUF3141) BN112_2074 PF01515 Phosphate acetyl/butaryl transferase BN112_2075 PF00871 Acetokinase family BN112_2077 PF00162 Phosphoglycerate kinase BN112_2078 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BN112_2078 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BN112_2079 PF02779 Transketolase, pyrimidine binding domain BN112_2079 PF02780 Transketolase, C-terminal domain BN112_2079 PF00456 Transketolase, thiamine diphosphate binding domain BN112_2080 PF04452 RNA methyltransferase BN112_2081 PF01337 Barstar (barnase inhibitor) BN112_2083 PF01515 Phosphate acetyl/butaryl transferase BN112_2083 PF03949 Malic enzyme, NAD binding domain BN112_2083 PF00390 Malic enzyme, N-terminal domain BN112_2085 PF00155 Aminotransferase class I and II BN112_2086 PF01464 Transglycosylase SLT domain BN112_2086 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BN112_2087 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BN112_2092 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BN112_2092 PF14824 Sirohaem biosynthesis protein central BN112_2092 PF10414 Sirohaem synthase dimerisation region BN112_2093 PF03212 Pertactin BN112_2093 PF03797 Autotransporter beta-domain BN112_2095 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BN112_2096 PF02547 Queuosine biosynthesis protein BN112_2097 PF01702 Queuine tRNA-ribosyltransferase BN112_2098 PF02699 Preprotein translocase subunit BN112_2099 PF02355 Protein export membrane protein BN112_2099 PF13721 SecD export protein N-terminal TM region BN112_2099 PF07549 SecD/SecF GG Motif BN112_2100 PF07549 SecD/SecF GG Motif BN112_2100 PF02355 Protein export membrane protein BN112_2102 PF00919 Uncharacterized protein family UPF0004 BN112_2102 PF01938 TRAM domain BN112_2102 PF04055 Radical SAM superfamily BN112_2103 PF02562 PhoH-like protein BN112_2104 PF02130 Uncharacterized protein family UPF0054 BN112_2105 PF00571 CBS domain BN112_2105 PF03471 Transporter associated domain BN112_2106 PF00795 Carbon-nitrogen hydrolase BN112_2107 PF00248 Aldo/keto reductase family BN112_2108 PF00392 Bacterial regulatory proteins, gntR family BN112_2108 PF07729 FCD domain BN112_2110 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2112 PF00890 FAD binding domain BN112_2112 PF14537 Cytochrome c3 BN112_2113 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2114 PF07683 Cobalamin synthesis protein cobW C-terminal domain BN112_2114 PF02492 CobW/HypB/UreG, nucleotide-binding domain BN112_2115 PF00857 Isochorismatase family BN112_2116 PF01979 Amidohydrolase family BN112_2117 PF00694 Aconitase C-terminal domain BN112_2117 PF00330 Aconitase family (aconitate hydratase) BN112_2122 PF06968 Biotin and Thiamin Synthesis associated domain BN112_2122 PF04055 Radical SAM superfamily BN112_2125 PF08534 Redoxin BN112_2127 PF01738 Dienelactone hydrolase family BN112_2129 PF01967 MoaC family BN112_2130 PF02597 ThiS family BN112_2131 PF02391 MoaE protein BN112_2132 PF00994 Probable molybdopterin binding domain BN112_2133 PF03453 MoeA N-terminal region (domain I and II) BN112_2133 PF00994 Probable molybdopterin binding domain BN112_2133 PF03454 MoeA C-terminal region (domain IV) BN112_2134 PF06463 Molybdenum Cofactor Synthesis C BN112_2134 PF04055 Radical SAM superfamily BN112_2137 PF00037 4Fe-4S binding domain BN112_2137 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BN112_2137 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BN112_2138 PF00384 Molybdopterin oxidoreductase BN112_2138 PF01568 Molydopterin dinucleotide binding domain BN112_2138 PF12838 4Fe-4S dicluster domain BN112_2138 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BN112_2138 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BN112_2139 PF02634 FdhD/NarQ family BN112_2141 PF05175 Methyltransferase small domain BN112_2144 PF00582 Universal stress protein family BN112_2145 PF00892 EamA-like transporter family BN112_2146 PF00291 Pyridoxal-phosphate dependent enzyme BN112_2148 PF00083 Sugar (and other) transporter BN112_2148 PF07690 Major Facilitator Superfamily BN112_2149 PF06481 COX Aromatic Rich Motif BN112_2149 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BN112_2150 PF00115 Cytochrome C and Quinol oxidase polypeptide I BN112_2151 PF00510 Cytochrome c oxidase subunit III BN112_2152 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BN112_2153 PF02104 SURF1 family BN112_2157 PF08281 Sigma-70, region 4 BN112_2157 PF04542 Sigma-70 region 2 BN112_2159 PF04461 Protein of unknown function (DUF520) BN112_2162 PF01476 LysM domain BN112_2162 PF01551 Peptidase family M23 BN112_2165 PF00593 TonB dependent receptor BN112_2165 PF07715 TonB-dependent Receptor Plug Domain BN112_2168 PF05114 Protein of unknown function (DUF692) BN112_2171 PF07690 Major Facilitator Superfamily BN112_2172 PF01022 Bacterial regulatory protein, arsR family BN112_2173 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BN112_2174 PF00510 Cytochrome c oxidase subunit III BN112_2175 PF00115 Cytochrome C and Quinol oxidase polypeptide I BN112_2176 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BN112_2176 PF06481 COX Aromatic Rich Motif BN112_2177 PF00072 Response regulator receiver domain BN112_2180 PF02678 Pirin BN112_2180 PF05726 Pirin C-terminal cupin domain BN112_2182 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2182 PF03466 LysR substrate binding domain BN112_2184 PF02515 CoA-transferase family III BN112_2185 PF03466 LysR substrate binding domain BN112_2185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2186 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2188 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2188 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2188 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2191 PF00585 C-terminal regulatory domain of Threonine dehydratase BN112_2191 PF00291 Pyridoxal-phosphate dependent enzyme BN112_2192 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BN112_2193 PF04102 SlyX BN112_2194 PF03976 Polyphosphate kinase 2 (PPK2) BN112_2196 PF07969 Amidohydrolase family BN112_2197 PF02311 AraC-like ligand binding domain BN112_2197 PF12833 Helix-turn-helix domain BN112_2199 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2199 PF03466 LysR substrate binding domain BN112_2200 PF03060 Nitronate monooxygenase BN112_2202 PF02585 GlcNAc-PI de-N-acetylase BN112_2203 PF03737 Aldolase/RraA BN112_2204 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2205 PF00962 Adenosine/AMP deaminase BN112_2211 PF05362 Lon protease (S16) C-terminal proteolytic domain BN112_2211 PF02190 ATP-dependent protease La (LON) substrate-binding domain BN112_2211 PF00004 ATPase family associated with various cellular activities (AAA) BN112_2212 PF00561 alpha/beta hydrolase fold BN112_2214 PF13247 4Fe-4S dicluster domain BN112_2215 PF03916 Polysulphide reductase, NrfD BN112_2216 PF01568 Molydopterin dinucleotide binding domain BN112_2216 PF00384 Molybdopterin oxidoreductase BN112_2216 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BN112_2218 PF00155 Aminotransferase class I and II BN112_2218 PF00392 Bacterial regulatory proteins, gntR family BN112_2220 PF02322 Cytochrome bd terminal oxidase subunit II BN112_2221 PF01654 Cytochrome bd terminal oxidase subunit I BN112_2223 PF18029 Glyoxalase-like domain BN112_2225 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BN112_2225 PF02805 Metal binding domain of Ada BN112_2225 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BN112_2225 PF12833 Helix-turn-helix domain BN112_2228 PF01814 Hemerythrin HHE cation binding domain BN112_2230 PF01323 DSBA-like thioredoxin domain BN112_2231 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_2233 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BN112_2233 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_2234 PF01425 Amidase BN112_2235 PF01909 Nucleotidyltransferase domain BN112_2235 PF13427 Domain of unknown function (DUF4111) BN112_2236 PF00583 Acetyltransferase (GNAT) family BN112_2239 PF13185 GAF domain BN112_2239 PF00990 Diguanylate cyclase, GGDEF domain BN112_2240 PF03466 LysR substrate binding domain BN112_2240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2241 PF00378 Enoyl-CoA hydratase/isomerase BN112_2242 PF02515 CoA-transferase family III BN112_2243 PF00171 Aldehyde dehydrogenase family BN112_2244 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_2244 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_2244 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_2245 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2248 PF02627 Carboxymuconolactone decarboxylase family BN112_2250 PF03466 LysR substrate binding domain BN112_2250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2251 PF02203 Tar ligand binding domain homologue BN112_2251 PF00672 HAMP domain BN112_2251 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BN112_2253 PF03466 LysR substrate binding domain BN112_2253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2255 PF00440 Bacterial regulatory proteins, tetR family BN112_2256 PF00893 Small Multidrug Resistance protein BN112_2258 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2258 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2258 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2259 PF00440 Bacterial regulatory proteins, tetR family BN112_2259 PF17932 Tetracyclin repressor-like, C-terminal domain BN112_2261 PF02515 CoA-transferase family III BN112_2262 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2263 PF02040 Arsenical pump membrane protein BN112_2266 PF02321 Outer membrane efflux protein BN112_2268 PF03412 Peptidase C39 family BN112_2268 PF00005 ABC transporter BN112_2268 PF00664 ABC transporter transmembrane region BN112_2269 PF00529 HlyD membrane-fusion protein of T1SS BN112_2269 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BN112_2274 PF00857 Isochorismatase family BN112_2275 PF00155 Aminotransferase class I and II BN112_2276 PF01966 HD domain BN112_2277 PF00403 Heavy-metal-associated domain BN112_2280 PF00107 Zinc-binding dehydrogenase BN112_2280 PF08240 Alcohol dehydrogenase GroES-like domain BN112_2283 PF00005 ABC transporter BN112_2284 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2286 PF00501 AMP-binding enzyme BN112_2286 PF13193 AMP-binding enzyme C-terminal domain BN112_2288 PF01037 Lrp/AsnC ligand binding domain BN112_2288 PF13404 AsnC-type helix-turn-helix domain BN112_2289 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2290 PF00677 Lumazine binding domain BN112_2291 PF07690 Major Facilitator Superfamily BN112_2292 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BN112_2294 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2294 PF03466 LysR substrate binding domain BN112_2295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BN112_2296 PF00005 ABC transporter BN112_2297 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_2297 PF00005 ABC transporter BN112_2299 PF02653 Branched-chain amino acid transport system / permease component BN112_2300 PF01042 Endoribonuclease L-PSP BN112_2301 PF13193 AMP-binding enzyme C-terminal domain BN112_2301 PF00501 AMP-binding enzyme BN112_2303 PF13458 Periplasmic binding protein BN112_2304 PF09339 IclR helix-turn-helix domain BN112_2304 PF01614 Bacterial transcriptional regulator BN112_2307 PF00005 ABC transporter BN112_2308 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2310 PF00378 Enoyl-CoA hydratase/isomerase BN112_2311 PF02515 CoA-transferase family III BN112_2312 PF01425 Amidase BN112_2313 PF00392 Bacterial regulatory proteins, gntR family BN112_2313 PF07729 FCD domain BN112_2316 PF07702 UTRA domain BN112_2316 PF00392 Bacterial regulatory proteins, gntR family BN112_2317 PF03795 YCII-related domain BN112_2324 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2324 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2324 PF12806 Acetyl-CoA dehydrogenase C-terminal like BN112_2324 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2325 PF00501 AMP-binding enzyme BN112_2325 PF13193 AMP-binding enzyme C-terminal domain BN112_2326 PF00378 Enoyl-CoA hydratase/isomerase BN112_2327 PF00378 Enoyl-CoA hydratase/isomerase BN112_2328 PF05231 MASE1 BN112_2328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_2328 PF07730 Histidine kinase BN112_2329 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2330 PF00196 Bacterial regulatory proteins, luxR family BN112_2330 PF00072 Response regulator receiver domain BN112_2331 PF03466 LysR substrate binding domain BN112_2331 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2332 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2334 PF00795 Carbon-nitrogen hydrolase BN112_2336 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2338 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2338 PF03466 LysR substrate binding domain BN112_2340 PF01613 Flavin reductase like domain BN112_2341 PF01070 FMN-dependent dehydrogenase BN112_2342 PF00701 Dihydrodipicolinate synthetase family BN112_2343 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_2343 PF14759 Reductase C-terminal BN112_2344 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_2346 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BN112_2346 PF00355 Rieske [2Fe-2S] domain BN112_2347 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2348 PF00072 Response regulator receiver domain BN112_2348 PF00196 Bacterial regulatory proteins, luxR family BN112_2349 PF13426 PAS domain BN112_2349 PF00989 PAS fold BN112_2349 PF00512 His Kinase A (phospho-acceptor) domain BN112_2349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_2349 PF13493 Domain of unknown function (DUF4118) BN112_2349 PF08447 PAS fold BN112_2350 PF00690 Cation transporter/ATPase, N-terminus BN112_2350 PF00689 Cation transporting ATPase, C-terminus BN112_2351 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2352 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2352 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2352 PF18158 Adaptive response protein AidB N-terminal domain BN112_2353 PF02515 CoA-transferase family III BN112_2354 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2354 PF03466 LysR substrate binding domain BN112_2355 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2358 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2359 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2359 PF03466 LysR substrate binding domain BN112_2360 PF02515 CoA-transferase family III BN112_2361 PF00378 Enoyl-CoA hydratase/isomerase BN112_2363 PF00378 Enoyl-CoA hydratase/isomerase BN112_2364 PF00108 Thiolase, N-terminal domain BN112_2364 PF02803 Thiolase, C-terminal domain BN112_2365 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2367 PF02515 CoA-transferase family III BN112_2370 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2373 PF02627 Carboxymuconolactone decarboxylase family BN112_2374 PF00392 Bacterial regulatory proteins, gntR family BN112_2374 PF07729 FCD domain BN112_2376 PF00005 ABC transporter BN112_2377 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2378 PF00753 Metallo-beta-lactamase superfamily BN112_2379 PF05199 GMC oxidoreductase BN112_2379 PF00732 GMC oxidoreductase BN112_2380 PF00171 Aldehyde dehydrogenase family BN112_2381 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2383 PF16363 GDP-mannose 4,6 dehydratase BN112_2384 PF00561 alpha/beta hydrolase fold BN112_2386 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_2388 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_2389 PF02515 CoA-transferase family III BN112_2392 PF02627 Carboxymuconolactone decarboxylase family BN112_2393 PF01053 Cys/Met metabolism PLP-dependent enzyme BN112_2394 PF03466 LysR substrate binding domain BN112_2394 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2395 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BN112_2397 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BN112_2397 PF01842 ACT domain BN112_2397 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BN112_2398 PF03328 HpcH/HpaI aldolase/citrate lyase family BN112_2399 PF08450 SMP-30/Gluconolactonase/LRE-like region BN112_2400 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2402 PF00155 Aminotransferase class I and II BN112_2403 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2404 PF00005 ABC transporter BN112_2404 PF08402 TOBE domain BN112_2407 PF02515 CoA-transferase family III BN112_2408 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2409 PF00378 Enoyl-CoA hydratase/isomerase BN112_2410 PF03466 LysR substrate binding domain BN112_2410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2411 PF03466 LysR substrate binding domain BN112_2411 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2412 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BN112_2412 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BN112_2413 PF07005 Sugar-binding N-terminal domain BN112_2413 PF17042 Nucleotide-binding C-terminal domain BN112_2414 PF03328 HpcH/HpaI aldolase/citrate lyase family BN112_2416 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BN112_2416 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BN112_2417 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2418 PF00378 Enoyl-CoA hydratase/isomerase BN112_2419 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2420 PF03466 LysR substrate binding domain BN112_2420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2423 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2423 PF03466 LysR substrate binding domain BN112_2424 PF00005 ABC transporter BN112_2425 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2427 PF00330 Aconitase family (aconitate hydratase) BN112_2428 PF00694 Aconitase C-terminal domain BN112_2429 PF00180 Isocitrate/isopropylmalate dehydrogenase BN112_2430 PF00850 Histone deacetylase domain BN112_2431 PF02423 Ornithine cyclodeaminase/mu-crystallin family BN112_2432 PF03466 LysR substrate binding domain BN112_2432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2433 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase BN112_2435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_2436 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2436 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_2437 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2438 PF00005 ABC transporter BN112_2438 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_2439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2439 PF03466 LysR substrate binding domain BN112_2441 PF13193 AMP-binding enzyme C-terminal domain BN112_2441 PF00501 AMP-binding enzyme BN112_2442 PF00378 Enoyl-CoA hydratase/isomerase BN112_2442 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_2442 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_2443 PF03466 LysR substrate binding domain BN112_2443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2445 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2447 PF08402 TOBE domain BN112_2447 PF00005 ABC transporter BN112_2449 PF01266 FAD dependent oxidoreductase BN112_2451 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_2451 PF04324 BFD-like [2Fe-2S] binding domain BN112_2452 PF08448 PAS fold BN112_2452 PF00990 Diguanylate cyclase, GGDEF domain BN112_2453 PF03466 LysR substrate binding domain BN112_2453 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2454 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2455 PF07171 MlrC C-terminus BN112_2455 PF07364 Metallopeptidase family M81 BN112_2456 PF01925 Sulfite exporter TauE/SafE BN112_2457 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2459 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2459 PF03466 LysR substrate binding domain BN112_2460 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2461 PF02515 CoA-transferase family III BN112_2462 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2462 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2462 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2464 PF00582 Universal stress protein family BN112_2468 PF00857 Isochorismatase family BN112_2469 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BN112_2469 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BN112_2471 PF01614 Bacterial transcriptional regulator BN112_2471 PF09339 IclR helix-turn-helix domain BN112_2472 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2474 PF03466 LysR substrate binding domain BN112_2474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2476 PF00890 FAD binding domain BN112_2480 PF00166 Chaperonin 10 Kd subunit BN112_2481 PF00118 TCP-1/cpn60 chaperonin family BN112_2482 PF03797 Autotransporter beta-domain BN112_2482 PF03212 Pertactin BN112_2483 PF03631 Virulence factor BrkB BN112_2484 PF01219 Prokaryotic diacylglycerol kinase BN112_2485 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_2486 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BN112_2487 PF00994 Probable molybdopterin binding domain BN112_2487 PF02464 Competence-damaged protein BN112_2487 PF18146 Damage-inducible protein CinA KH domain BN112_2488 PF04608 Phosphatidylglycerophosphatase A BN112_2489 PF02769 AIR synthase related protein, C-terminal domain BN112_2489 PF00586 AIR synthase related protein, N-terminal domain BN112_2490 PF01029 NusB family BN112_2491 PF00885 6,7-dimethyl-8-ribityllumazine synthase BN112_2492 PF00925 GTP cyclohydrolase II BN112_2492 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BN112_2496 PF00005 ABC transporter BN112_2497 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2498 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2500 PF02881 SRP54-type protein, helical bundle domain BN112_2500 PF00448 SRP54-type protein, GTPase domain BN112_2502 PF01467 Cytidylyltransferase-like BN112_2503 PF00037 4Fe-4S binding domain BN112_2504 PF03594 Benzoate membrane transport protein BN112_2507 PF01022 Bacterial regulatory protein, arsR family BN112_2510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2510 PF03466 LysR substrate binding domain BN112_2512 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_2513 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_2513 PF00005 ABC transporter BN112_2514 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2515 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2517 PF00390 Malic enzyme, N-terminal domain BN112_2517 PF03949 Malic enzyme, NAD binding domain BN112_2517 PF01515 Phosphate acetyl/butaryl transferase BN112_2518 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BN112_2519 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_2520 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_2520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_2521 PF00392 Bacterial regulatory proteins, gntR family BN112_2521 PF07729 FCD domain BN112_2522 PF07690 Major Facilitator Superfamily BN112_2524 PF00440 Bacterial regulatory proteins, tetR family BN112_2524 PF17932 Tetracyclin repressor-like, C-terminal domain BN112_2525 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2531 PF17757 UvrB interaction domain BN112_2531 PF12344 Ultra-violet resistance protein B BN112_2531 PF02151 UvrB/uvrC motif BN112_2531 PF04851 Type III restriction enzyme, res subunit BN112_2531 PF00271 Helicase conserved C-terminal domain BN112_2535 PF00176 SNF2 family N-terminal domain BN112_2535 PF00271 Helicase conserved C-terminal domain BN112_2537 PF06071 Protein of unknown function (DUF933) BN112_2537 PF01926 50S ribosome-binding GTPase BN112_2539 PF01195 Peptidyl-tRNA hydrolase BN112_2540 PF01386 Ribosomal L25p family BN112_2540 PF14693 Ribosomal protein TL5, C-terminal domain BN112_2541 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BN112_2541 PF14572 Phosphoribosyl synthetase-associated domain BN112_2542 PF00288 GHMP kinases N terminal domain BN112_2542 PF08544 GHMP kinases C terminal BN112_2543 PF03550 Outer membrane lipoprotein LolB BN112_2545 PF06827 Zinc finger found in FPG and IleRS BN112_2545 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BN112_2545 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BN112_2547 PF01494 FAD binding domain BN112_2549 PF03466 LysR substrate binding domain BN112_2549 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2550 PF04209 homogentisate 1,2-dioxygenase BN112_2552 PF00884 Sulfatase BN112_2553 PF00512 His Kinase A (phospho-acceptor) domain BN112_2553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_2553 PF08521 Two-component sensor kinase N-terminal BN112_2554 PF00072 Response regulator receiver domain BN112_2554 PF00486 Transcriptional regulatory protein, C terminal BN112_2555 PF01565 FAD binding domain BN112_2555 PF02913 FAD linked oxidases, C-terminal domain BN112_2557 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BN112_2557 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BN112_2557 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BN112_2557 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BN112_2558 PF00342 Phosphoglucose isomerase BN112_2559 PF13477 Glycosyl transferase 4-like BN112_2559 PF00534 Glycosyl transferases group 1 BN112_2560 PF00534 Glycosyl transferases group 1 BN112_2560 PF13439 Glycosyltransferase Family 4 BN112_2561 PF13439 Glycosyltransferase Family 4 BN112_2561 PF00534 Glycosyl transferases group 1 BN112_2562 PF00733 Asparagine synthase BN112_2562 PF13537 Glutamine amidotransferase domain BN112_2563 PF13439 Glycosyltransferase Family 4 BN112_2563 PF00534 Glycosyl transferases group 1 BN112_2564 PF03023 Lipid II flippase MurJ BN112_2565 PF01370 NAD dependent epimerase/dehydratase family BN112_2567 PF00953 Glycosyl transferase family 4 BN112_2568 PF03232 Ubiquinone biosynthesis protein COQ7 BN112_2570 PF00303 Thymidylate synthase BN112_2571 PF00186 Dihydrofolate reductase BN112_2572 PF00392 Bacterial regulatory proteins, gntR family BN112_2572 PF00155 Aminotransferase class I and II BN112_2573 PF00202 Aminotransferase class-III BN112_2574 PF00171 Aldehyde dehydrogenase family BN112_2575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_2576 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2577 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2578 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_2578 PF00005 ABC transporter BN112_2579 PF07364 Metallopeptidase family M81 BN112_2579 PF07171 MlrC C-terminus BN112_2582 PF00378 Enoyl-CoA hydratase/isomerase BN112_2584 PF02515 CoA-transferase family III BN112_2585 PF00392 Bacterial regulatory proteins, gntR family BN112_2585 PF07729 FCD domain BN112_2586 PF02347 Glycine cleavage system P-protein BN112_2587 PF01597 Glycine cleavage H-protein BN112_2588 PF08669 Glycine cleavage T-protein C-terminal barrel domain BN112_2588 PF01571 Aminomethyltransferase folate-binding domain BN112_2589 PF02535 ZIP Zinc transporter BN112_2590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BN112_2590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BN112_2592 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BN112_2592 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BN112_2592 PF01276 Orn/Lys/Arg decarboxylase, major domain BN112_2597 PF00692 dUTPase BN112_2600 PF10609 NUBPL iron-transfer P-loop NTPase BN112_2602 PF09334 tRNA synthetases class I (M) BN112_2602 PF01588 Putative tRNA binding domain BN112_2603 PF17773 UPF0176 acylphosphatase like domain BN112_2603 PF00581 Rhodanese-like domain BN112_2607 PF00491 Arginase family BN112_2608 PF00202 Aminotransferase class-III BN112_2610 PF07715 TonB-dependent Receptor Plug Domain BN112_2610 PF00593 TonB dependent receptor BN112_2615 PF00561 alpha/beta hydrolase fold BN112_2617 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2618 PF00005 ABC transporter BN112_2618 PF03459 TOBE domain BN112_2619 PF13091 PLD-like domain BN112_2621 PF01699 Sodium/calcium exchanger protein BN112_2624 PF14331 ImcF-related N-terminal domain BN112_2624 PF06761 Intracellular multiplication and human macrophage-killing BN112_2624 PF06744 Type VI secretion protein IcmF C-terminal BN112_2625 PF00691 OmpA family BN112_2625 PF13677 Membrane MotB of proton-channel complex MotA/MotB BN112_2626 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE BN112_2630 PF10431 C-terminal, D2-small domain, of ClpB protein BN112_2630 PF00004 ATPase family associated with various cellular activities (AAA) BN112_2630 PF07724 AAA domain (Cdc48 subfamily) BN112_2630 PF17871 AAA lid domain BN112_2635 PF05947 Type VI secretion system, TssF BN112_2636 PF04965 Gene 25-like lysozyme BN112_2637 PF07024 ImpE protein BN112_2639 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath BN112_2640 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 BN112_2641 PF06812 ImpA, N-terminal, type VI secretion system BN112_2642 PF05076 Suppressor of fused protein (SUFU) BN112_2643 PF14449 Pre-toxin TG BN112_2643 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues BN112_2643 PF04740 LXG domain of WXG superfamily BN112_2647 PF04717 Type VI secretion system, phage-baseplate injector BN112_2647 PF06715 Gp5 C-terminal repeat (3 copies) BN112_2648 PF01478 Type IV leader peptidase family BN112_2648 PF06750 Bacterial Peptidase A24 N-terminal domain BN112_2649 PF00437 Type II/IV secretion system protein BN112_2656 PF03958 Bacterial type II/III secretion system short domain BN112_2656 PF00263 Bacterial type II and III secretion system protein BN112_2658 PF01471 Putative peptidoglycan binding domain BN112_2658 PF13401 AAA domain BN112_2659 PF00437 Type II/IV secretion system protein BN112_2660 PF00482 Type II secretion system (T2SS), protein F BN112_2668 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2670 PF01575 MaoC like domain BN112_2671 PF00108 Thiolase, N-terminal domain BN112_2671 PF02803 Thiolase, C-terminal domain BN112_2673 PF00378 Enoyl-CoA hydratase/isomerase BN112_2674 PF00106 short chain dehydrogenase BN112_2676 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_2676 PF00005 ABC transporter BN112_2677 PF00005 ABC transporter BN112_2678 PF02653 Branched-chain amino acid transport system / permease component BN112_2680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2680 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2681 PF00440 Bacterial regulatory proteins, tetR family BN112_2681 PF08361 MAATS-type transcriptional repressor, C-terminal region BN112_2682 PF14535 AMP-binding enzyme C-terminal domain BN112_2682 PF00501 AMP-binding enzyme BN112_2683 PF02515 CoA-transferase family III BN112_2685 PF00378 Enoyl-CoA hydratase/isomerase BN112_2688 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2690 PF07859 alpha/beta hydrolase fold BN112_2691 PF00171 Aldehyde dehydrogenase family BN112_2692 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_2692 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_2692 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_2693 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2694 PF03466 LysR substrate binding domain BN112_2694 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2695 PF03328 HpcH/HpaI aldolase/citrate lyase family BN112_2696 PF01557 Fumarylacetoacetate (FAA) hydrolase family BN112_2698 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BN112_2699 PF00171 Aldehyde dehydrogenase family BN112_2700 PF01557 Fumarylacetoacetate (FAA) hydrolase family BN112_2701 PF01557 Fumarylacetoacetate (FAA) hydrolase family BN112_2702 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2703 PF01494 FAD binding domain BN112_2707 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BN112_2707 PF00355 Rieske [2Fe-2S] domain BN112_2708 PF00175 Oxidoreductase NAD-binding domain BN112_2708 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_2708 PF00970 Oxidoreductase FAD-binding domain BN112_2709 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2714 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_2716 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_2718 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2719 PF00857 Isochorismatase family BN112_2720 PF02515 CoA-transferase family III BN112_2721 PF00682 HMGL-like BN112_2723 PF03466 LysR substrate binding domain BN112_2723 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2724 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BN112_2725 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_2725 PF01799 [2Fe-2S] binding domain BN112_2726 PF03594 Benzoate membrane transport protein BN112_2727 PF00464 Serine hydroxymethyltransferase BN112_2728 PF00155 Aminotransferase class I and II BN112_2728 PF00392 Bacterial regulatory proteins, gntR family BN112_2729 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_2735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2735 PF03466 LysR substrate binding domain BN112_2738 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_2739 PF04115 Ureidoglycolate lyase BN112_2741 PF01425 Amidase BN112_2742 PF01546 Peptidase family M20/M25/M40 BN112_2742 PF07687 Peptidase dimerisation domain BN112_2743 PF01614 Bacterial transcriptional regulator BN112_2743 PF09339 IclR helix-turn-helix domain BN112_2744 PF07687 Peptidase dimerisation domain BN112_2744 PF01546 Peptidase family M20/M25/M40 BN112_2745 PF00005 ABC transporter BN112_2746 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2747 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_2748 PF00155 Aminotransferase class I and II BN112_2749 PF00701 Dihydrodipicolinate synthetase family BN112_2753 PF02492 CobW/HypB/UreG, nucleotide-binding domain BN112_2753 PF07683 Cobalamin synthesis protein cobW C-terminal domain BN112_2757 PF01053 Cys/Met metabolism PLP-dependent enzyme BN112_2758 PF00171 Aldehyde dehydrogenase family BN112_2759 PF00392 Bacterial regulatory proteins, gntR family BN112_2759 PF07729 FCD domain BN112_2760 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2761 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2762 PF00043 Glutathione S-transferase, C-terminal domain BN112_2762 PF02798 Glutathione S-transferase, N-terminal domain BN112_2765 PF00561 alpha/beta hydrolase fold BN112_2766 PF03466 LysR substrate binding domain BN112_2766 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2769 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2770 PF02803 Thiolase, C-terminal domain BN112_2770 PF00108 Thiolase, N-terminal domain BN112_2771 PF00378 Enoyl-CoA hydratase/isomerase BN112_2772 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2772 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2772 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2774 PF00378 Enoyl-CoA hydratase/isomerase BN112_2775 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2778 PF00501 AMP-binding enzyme BN112_2778 PF13193 AMP-binding enzyme C-terminal domain BN112_2779 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2779 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2779 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2780 PF01614 Bacterial transcriptional regulator BN112_2780 PF09339 IclR helix-turn-helix domain BN112_2781 PF03466 LysR substrate binding domain BN112_2781 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2784 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2786 PF02627 Carboxymuconolactone decarboxylase family BN112_2787 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2788 PF00171 Aldehyde dehydrogenase family BN112_2789 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2791 PF13545 Crp-like helix-turn-helix domain BN112_2791 PF00027 Cyclic nucleotide-binding domain BN112_2792 PF01614 Bacterial transcriptional regulator BN112_2792 PF09339 IclR helix-turn-helix domain BN112_2795 PF00005 ABC transporter BN112_2796 PF00528 Binding-protein-dependent transport system inner membrane component BN112_2797 PF03358 NADPH-dependent FMN reductase BN112_2798 PF00171 Aldehyde dehydrogenase family BN112_2801 PF01425 Amidase BN112_2802 PF00378 Enoyl-CoA hydratase/isomerase BN112_2803 PF00465 Iron-containing alcohol dehydrogenase BN112_2804 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2805 PF02515 CoA-transferase family III BN112_2806 PF00378 Enoyl-CoA hydratase/isomerase BN112_2807 PF00682 HMGL-like BN112_2809 PF00881 Nitroreductase family BN112_2810 PF00378 Enoyl-CoA hydratase/isomerase BN112_2812 PF17932 Tetracyclin repressor-like, C-terminal domain BN112_2812 PF00440 Bacterial regulatory proteins, tetR family BN112_2813 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2814 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2816 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2816 PF03466 LysR substrate binding domain BN112_2818 PF01012 Electron transfer flavoprotein domain BN112_2818 PF00766 Electron transfer flavoprotein FAD-binding domain BN112_2819 PF01012 Electron transfer flavoprotein domain BN112_2820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2820 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2821 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2821 PF03466 LysR substrate binding domain BN112_2822 PF02515 CoA-transferase family III BN112_2824 PF13193 AMP-binding enzyme C-terminal domain BN112_2824 PF00501 AMP-binding enzyme BN112_2824 PF16177 Acetyl-coenzyme A synthetase N-terminus BN112_2825 PF00108 Thiolase, N-terminal domain BN112_2825 PF02803 Thiolase, C-terminal domain BN112_2828 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2828 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2828 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2829 PF00682 HMGL-like BN112_2829 PF02436 Conserved carboxylase domain BN112_2829 PF00289 Biotin carboxylase, N-terminal domain BN112_2829 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BN112_2829 PF00364 Biotin-requiring enzyme BN112_2829 PF02785 Biotin carboxylase C-terminal domain BN112_2830 PF09339 IclR helix-turn-helix domain BN112_2831 PF09339 IclR helix-turn-helix domain BN112_2832 PF13193 AMP-binding enzyme C-terminal domain BN112_2832 PF00501 AMP-binding enzyme BN112_2833 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BN112_2833 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BN112_2834 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2836 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BN112_2836 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_2837 PF00005 ABC transporter BN112_2838 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_2838 PF00005 ABC transporter BN112_2840 PF02653 Branched-chain amino acid transport system / permease component BN112_2842 PF00378 Enoyl-CoA hydratase/isomerase BN112_2845 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2846 PF02515 CoA-transferase family III BN112_2847 PF02515 CoA-transferase family III BN112_2848 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2848 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2848 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2849 PF01575 MaoC like domain BN112_2851 PF00890 FAD binding domain BN112_2852 PF13577 SnoaL-like domain BN112_2853 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2854 PF00378 Enoyl-CoA hydratase/isomerase BN112_2856 PF13193 AMP-binding enzyme C-terminal domain BN112_2856 PF00501 AMP-binding enzyme BN112_2858 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_2858 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_2858 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_2860 PF17645 Arylmalonate decarboxylase BN112_2863 PF00440 Bacterial regulatory proteins, tetR family BN112_2863 PF17938 Tetracyclin repressor-like, C-terminal domain BN112_2864 PF13458 Periplasmic binding protein BN112_2867 PF00005 ABC transporter BN112_2867 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_2868 PF00005 ABC transporter BN112_2871 PF04205 FMN-binding domain BN112_2871 PF00890 FAD binding domain BN112_2873 PF00356 Bacterial regulatory proteins, lacI family BN112_2874 PF00501 AMP-binding enzyme BN112_2874 PF13193 AMP-binding enzyme C-terminal domain BN112_2877 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2878 PF01614 Bacterial transcriptional regulator BN112_2878 PF09339 IclR helix-turn-helix domain BN112_2879 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2880 PF00378 Enoyl-CoA hydratase/isomerase BN112_2880 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_2880 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_2881 PF02515 CoA-transferase family III BN112_2882 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_2882 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_2882 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_2883 PF03466 LysR substrate binding domain BN112_2883 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2885 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2887 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2888 PF00378 Enoyl-CoA hydratase/isomerase BN112_2889 PF13607 Succinyl-CoA ligase like flavodoxin domain BN112_2889 PF13380 CoA binding domain BN112_2890 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2891 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2891 PF03466 LysR substrate binding domain BN112_2896 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2898 PF00355 Rieske [2Fe-2S] domain BN112_2899 PF00175 Oxidoreductase NAD-binding domain BN112_2899 PF00970 Oxidoreductase FAD-binding domain BN112_2899 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_2900 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_2902 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_2904 PF00355 Rieske [2Fe-2S] domain BN112_2904 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BN112_2907 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2908 PF00682 HMGL-like BN112_2909 PF02515 CoA-transferase family III BN112_2911 PF02390 Putative methyltransferase BN112_2912 PF00561 alpha/beta hydrolase fold BN112_2913 PF05690 Thiazole biosynthesis protein ThiG BN112_2913 PF02597 ThiS family BN112_2914 PF01476 LysM domain BN112_2914 PF04972 BON domain BN112_2915 PF02881 SRP54-type protein, helical bundle domain BN112_2915 PF02978 Signal peptide binding domain BN112_2915 PF00448 SRP54-type protein, GTPase domain BN112_2916 PF01578 Cytochrome C assembly protein BN112_2918 PF01510 N-acetylmuramoyl-L-alanine amidase BN112_2919 PF00043 Glutathione S-transferase, C-terminal domain BN112_2919 PF13417 Glutathione S-transferase, N-terminal domain BN112_2920 PF00183 Hsp90 protein BN112_2920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_2921 PF00589 Phage integrase family BN112_2924 PF00271 Helicase conserved C-terminal domain BN112_2925 PF00149 Calcineurin-like phosphoesterase BN112_2931 PF00440 Bacterial regulatory proteins, tetR family BN112_2932 PF03033 Glycosyltransferase family 28 N-terminal domain BN112_2933 PF07683 Cobalamin synthesis protein cobW C-terminal domain BN112_2933 PF02492 CobW/HypB/UreG, nucleotide-binding domain BN112_2934 PF01979 Amidohydrolase family BN112_2935 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2936 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2937 PF00884 Sulfatase BN112_2937 PF12411 Choline sulfatase enzyme C terminal BN112_2938 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2939 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2939 PF03466 LysR substrate binding domain BN112_2940 PF00313 'Cold-shock' DNA-binding domain BN112_2942 PF00392 Bacterial regulatory proteins, gntR family BN112_2942 PF07729 FCD domain BN112_2943 PF02667 Short chain fatty acid transporter BN112_2944 PF00175 Oxidoreductase NAD-binding domain BN112_2944 PF00970 Oxidoreductase FAD-binding domain BN112_2944 PF00042 Globin BN112_2945 PF01042 Endoribonuclease L-PSP BN112_2946 PF03466 LysR substrate binding domain BN112_2946 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2947 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2948 PF02515 CoA-transferase family III BN112_2950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2950 PF03466 LysR substrate binding domain BN112_2951 PF02515 CoA-transferase family III BN112_2952 PF00107 Zinc-binding dehydrogenase BN112_2952 PF08240 Alcohol dehydrogenase GroES-like domain BN112_2953 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2954 PF02627 Carboxymuconolactone decarboxylase family BN112_2955 PF00378 Enoyl-CoA hydratase/isomerase BN112_2956 PF09339 IclR helix-turn-helix domain BN112_2956 PF01614 Bacterial transcriptional regulator BN112_2957 PF00501 AMP-binding enzyme BN112_2957 PF13193 AMP-binding enzyme C-terminal domain BN112_2958 PF03401 Tripartite tricarboxylate transporter family receptor BN112_2960 PF12951 Passenger-associated-transport-repeat BN112_2960 PF12951 Passenger-associated-transport-repeat BN112_2963 PF03797 Autotransporter beta-domain BN112_2963 PF12951 Passenger-associated-transport-repeat BN112_2963 PF00082 Subtilase family BN112_2965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2965 PF03466 LysR substrate binding domain BN112_2967 PF14031 Putative serine dehydratase domain BN112_2967 PF01168 Alanine racemase, N-terminal domain BN112_2968 PF07411 Domain of unknown function (DUF1508) BN112_2969 PF01145 SPFH domain / Band 7 family BN112_2971 PF01042 Endoribonuclease L-PSP BN112_2972 PF07885 Ion channel BN112_2972 PF02254 TrkA-N domain BN112_2974 PF01594 AI-2E family transporter BN112_2975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_2975 PF03466 LysR substrate binding domain BN112_2976 PF13533 Biotin-lipoyl like BN112_2977 PF00873 AcrB/AcrD/AcrF family BN112_2978 PF02321 Outer membrane efflux protein BN112_2980 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) BN112_2981 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation BN112_2981 PF01118 Semialdehyde dehydrogenase, NAD binding domain BN112_2982 PF00920 Dehydratase family BN112_2983 PF12833 Helix-turn-helix domain BN112_2984 PF00682 HMGL-like BN112_2984 PF08502 LeuA allosteric (dimerisation) domain BN112_2987 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_2988 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BN112_2989 PF04299 Putative FMN-binding domain BN112_2992 PF06508 Queuosine biosynthesis protein QueC BN112_2993 PF00311 Phosphoenolpyruvate carboxylase BN112_2994 PF00082 Subtilase family BN112_2994 PF03797 Autotransporter beta-domain BN112_2995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_2995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_2996 PF02667 Short chain fatty acid transporter BN112_2998 PF09339 IclR helix-turn-helix domain BN112_2998 PF01614 Bacterial transcriptional regulator BN112_2999 PF01144 Coenzyme A transferase BN112_3000 PF01144 Coenzyme A transferase BN112_3001 PF02426 Muconolactone delta-isomerase BN112_3003 PF12146 Serine aminopeptidase, S33 BN112_3007 PF00484 Carbonic anhydrase BN112_3008 PF01425 Amidase BN112_3009 PF13458 Periplasmic binding protein BN112_3010 PF03466 LysR substrate binding domain BN112_3010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3011 PF02653 Branched-chain amino acid transport system / permease component BN112_3012 PF02653 Branched-chain amino acid transport system / permease component BN112_3013 PF00005 ABC transporter BN112_3013 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_3014 PF00005 ABC transporter BN112_3016 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BN112_3016 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BN112_3018 PF03180 NLPA lipoprotein BN112_3021 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BN112_3021 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BN112_3022 PF01799 [2Fe-2S] binding domain BN112_3022 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_3023 PF03450 CO dehydrogenase flavoprotein C-terminal domain BN112_3023 PF00941 FAD binding domain in molybdopterin dehydrogenase BN112_3024 PF09084 NMT1/THI5 like BN112_3025 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3026 PF02441 Flavoprotein BN112_3027 PF00462 Glutaredoxin BN112_3028 PF05175 Methyltransferase small domain BN112_3028 PF17827 PrmC N-terminal domain BN112_3029 PF00472 RF-1 domain BN112_3029 PF03462 PCRF domain BN112_3030 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BN112_3030 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BN112_3030 PF01488 Shikimate / quinate 5-dehydrogenase BN112_3035 PF00486 Transcriptional regulatory protein, C terminal BN112_3035 PF00072 Response regulator receiver domain BN112_3036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_3036 PF00512 His Kinase A (phospho-acceptor) domain BN112_3036 PF00072 Response regulator receiver domain BN112_3036 PF13426 PAS domain BN112_3036 PF08448 PAS fold BN112_3037 PF01970 Tripartite tricarboxylate transporter TctA family BN112_3040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BN112_3044 PF00005 ABC transporter BN112_3045 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_3045 PF00005 ABC transporter BN112_3047 PF02653 Branched-chain amino acid transport system / permease component BN112_3049 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BN112_3049 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BN112_3050 PF00378 Enoyl-CoA hydratase/isomerase BN112_3051 PF03466 LysR substrate binding domain BN112_3051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3052 PF01144 Coenzyme A transferase BN112_3053 PF01144 Coenzyme A transferase BN112_3056 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3057 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3060 PF07702 UTRA domain BN112_3060 PF00392 Bacterial regulatory proteins, gntR family BN112_3061 PF03328 HpcH/HpaI aldolase/citrate lyase family BN112_3062 PF02515 CoA-transferase family III BN112_3063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3063 PF03466 LysR substrate binding domain BN112_3065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_3065 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_3065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_3067 PF09084 NMT1/THI5 like BN112_3068 PF00005 ABC transporter BN112_3069 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3071 PF13193 AMP-binding enzyme C-terminal domain BN112_3071 PF00501 AMP-binding enzyme BN112_3072 PF00107 Zinc-binding dehydrogenase BN112_3072 PF08240 Alcohol dehydrogenase GroES-like domain BN112_3073 PF07729 FCD domain BN112_3073 PF00392 Bacterial regulatory proteins, gntR family BN112_3076 PF07729 FCD domain BN112_3076 PF00392 Bacterial regulatory proteins, gntR family BN112_3077 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_3077 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_3077 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_3081 PF01063 Amino-transferase class IV BN112_3082 PF00005 ABC transporter BN112_3083 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3084 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3085 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_3086 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3086 PF03466 LysR substrate binding domain BN112_3087 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_3088 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3089 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_3089 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3090 PF00005 ABC transporter BN112_3090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_3091 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_3091 PF00005 ABC transporter BN112_3093 PF02685 Glucokinase BN112_3093 PF01380 SIS domain BN112_3093 PF01418 Helix-turn-helix domain, rpiR family BN112_3094 PF07969 Amidohydrolase family BN112_3095 PF00171 Aldehyde dehydrogenase family BN112_3096 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3097 PF01266 FAD dependent oxidoreductase BN112_3098 PF02538 Hydantoinase B/oxoprolinase BN112_3099 PF01968 Hydantoinase/oxoprolinase BN112_3099 PF05378 Hydantoinase/oxoprolinase N-terminal region BN112_3100 PF03466 LysR substrate binding domain BN112_3100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3101 PF00348 Polyprenyl synthetase BN112_3103 PF00829 Ribosomal prokaryotic L21 protein BN112_3104 PF01016 Ribosomal L27 protein BN112_3105 PF01018 GTP1/OBG BN112_3105 PF01926 50S ribosome-binding GTPase BN112_3106 PF00696 Amino acid kinase family BN112_3106 PF01472 PUA domain BN112_3111 PF09518 HindIII restriction endonuclease BN112_3112 PF02355 Protein export membrane protein BN112_3112 PF07549 SecD/SecF GG Motif BN112_3113 PF01964 Radical SAM ThiC family BN112_3113 PF13667 ThiC-associated domain BN112_3114 PF02913 FAD linked oxidases, C-terminal domain BN112_3114 PF01565 FAD binding domain BN112_3116 PF00899 ThiF family BN112_3117 PF13180 PDZ domain BN112_3117 PF03572 Peptidase family S41 BN112_3118 PF01551 Peptidase family M23 BN112_3119 PF00300 Histidine phosphatase superfamily (branch 1) BN112_3120 PF00581 Rhodanese-like domain BN112_3120 PF17773 UPF0176 acylphosphatase like domain BN112_3120 PF12368 Rhodanase C-terminal BN112_3121 PF00462 Glutaredoxin BN112_3122 PF02556 Preprotein translocase subunit SecB BN112_3123 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BN112_3123 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BN112_3124 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3125 PF00588 SpoU rRNA Methylase family BN112_3127 PF08241 Methyltransferase domain BN112_3128 PF04107 Glutamate-cysteine ligase family 2(GCS2) BN112_3129 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_3131 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3132 PF00005 ABC transporter BN112_3134 PF01799 [2Fe-2S] binding domain BN112_3134 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_3135 PF00941 FAD binding domain in molybdopterin dehydrogenase BN112_3135 PF03450 CO dehydrogenase flavoprotein C-terminal domain BN112_3136 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BN112_3136 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BN112_3137 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_3138 PF00355 Rieske [2Fe-2S] domain BN112_3139 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_3139 PF14759 Reductase C-terminal BN112_3140 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BN112_3140 PF00355 Rieske [2Fe-2S] domain BN112_3142 PF00857 Isochorismatase family BN112_3144 PF00561 alpha/beta hydrolase fold BN112_3145 PF17645 Arylmalonate decarboxylase BN112_3147 PF12804 MobA-like NTP transferase domain BN112_3149 PF01047 MarR family BN112_3150 PF02386 Cation transport protein BN112_3151 PF02254 TrkA-N domain BN112_3151 PF02080 TrkA-C domain BN112_3152 PF00158 Sigma-54 interaction domain BN112_3152 PF00072 Response regulator receiver domain BN112_3152 PF02954 Bacterial regulatory protein, Fis family BN112_3153 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_3153 PF00672 HAMP domain BN112_3153 PF00512 His Kinase A (phospho-acceptor) domain BN112_3153 PF00989 PAS fold BN112_3155 PF01029 NusB family BN112_3155 PF01189 16S rRNA methyltransferase RsmB/F BN112_3157 PF03447 Homoserine dehydrogenase, NAD binding domain BN112_3157 PF01958 Domain of unknown function DUF108 BN112_3159 PF00392 Bacterial regulatory proteins, gntR family BN112_3159 PF07729 FCD domain BN112_3160 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3161 PF01266 FAD dependent oxidoreductase BN112_3162 PF01361 Tautomerase enzyme BN112_3163 PF00919 Uncharacterized protein family UPF0004 BN112_3163 PF04055 Radical SAM superfamily BN112_3163 PF18693 TRAM domain BN112_3165 PF03641 Possible lysine decarboxylase BN112_3167 PF13419 Haloacid dehalogenase-like hydrolase BN112_3169 PF02911 Formyl transferase, C-terminal domain BN112_3169 PF00551 Formyl transferase BN112_3170 PF01327 Polypeptide deformylase BN112_3172 PF01037 Lrp/AsnC ligand binding domain BN112_3173 PF17782 DprA winged helix domain BN112_3173 PF02481 DNA recombination-mediator protein A BN112_3174 PF00682 HMGL-like BN112_3176 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_3177 PF00155 Aminotransferase class I and II BN112_3178 PF01168 Alanine racemase, N-terminal domain BN112_3179 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3181 PF03466 LysR substrate binding domain BN112_3181 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3182 PF01810 LysE type translocator BN112_3184 PF00501 AMP-binding enzyme BN112_3185 PF00005 ABC transporter BN112_3185 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_3186 PF02653 Branched-chain amino acid transport system / permease component BN112_3189 PF00005 ABC transporter BN112_3190 PF00501 AMP-binding enzyme BN112_3190 PF14535 AMP-binding enzyme C-terminal domain BN112_3192 PF04143 Sulphur transport BN112_3194 PF00753 Metallo-beta-lactamase superfamily BN112_3195 PF03976 Polyphosphate kinase 2 (PPK2) BN112_3198 PF13439 Glycosyltransferase Family 4 BN112_3200 PF06965 Na+/H+ antiporter 1 BN112_3202 PF01048 Phosphorylase superfamily BN112_3203 PF13419 Haloacid dehalogenase-like hydrolase BN112_3204 PF03167 Uracil DNA glycosylase superfamily BN112_3205 PF00270 DEAD/DEAH box helicase BN112_3205 PF00271 Helicase conserved C-terminal domain BN112_3207 PF12627 Probable RNA and SrmB- binding site of polymerase A BN112_3207 PF01743 Poly A polymerase head domain BN112_3208 PF14718 Soluble lytic murein transglycosylase L domain BN112_3208 PF01464 Transglycosylase SLT domain BN112_3211 PF07690 Major Facilitator Superfamily BN112_3211 PF00083 Sugar (and other) transporter BN112_3212 PF00850 Histone deacetylase domain BN112_3213 PF03466 LysR substrate binding domain BN112_3213 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3214 PF02219 Methylenetetrahydrofolate reductase BN112_3215 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BN112_3216 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BN112_3216 PF05221 S-adenosyl-L-homocysteine hydrolase BN112_3217 PF13439 Glycosyltransferase Family 4 BN112_3217 PF00534 Glycosyl transferases group 1 BN112_3219 PF02773 S-adenosylmethionine synthetase, C-terminal domain BN112_3219 PF02772 S-adenosylmethionine synthetase, central domain BN112_3219 PF00438 S-adenosylmethionine synthetase, N-terminal domain BN112_3221 PF03279 Bacterial lipid A biosynthesis acyltransferase BN112_3222 PF01678 Diaminopimelate epimerase BN112_3224 PF00589 Phage integrase family BN112_3224 PF02899 Phage integrase, N-terminal SAM-like domain BN112_3226 PF03824 High-affinity nickel-transport protein BN112_3228 PF01297 Zinc-uptake complex component A periplasmic BN112_3229 PF00950 ABC 3 transport family BN112_3230 PF00005 ABC transporter BN112_3231 PF01475 Ferric uptake regulator family BN112_3232 PF07683 Cobalamin synthesis protein cobW C-terminal domain BN112_3232 PF02492 CobW/HypB/UreG, nucleotide-binding domain BN112_3233 PF01258 Prokaryotic dksA/traR C4-type zinc finger BN112_3234 PF00227 Proteasome subunit BN112_3235 PF07724 AAA domain (Cdc48 subfamily) BN112_3235 PF00004 ATPase family associated with various cellular activities (AAA) BN112_3235 PF10431 C-terminal, D2-small domain, of ClpB protein BN112_3237 PF01923 Cobalamin adenosyltransferase BN112_3238 PF16363 GDP-mannose 4,6 dehydratase BN112_3239 PF04321 RmlD substrate binding domain BN112_3240 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BN112_3241 PF04055 Radical SAM superfamily BN112_3241 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BN112_3242 PF03099 Biotin/lipoate A/B protein ligase family BN112_3243 PF04359 Protein of unknown function (DUF493) BN112_3244 PF01063 Amino-transferase class IV BN112_3245 PF07943 Penicillin-binding protein 5, C-terminal domain BN112_3245 PF00768 D-alanyl-D-alanine carboxypeptidase BN112_3249 PF00005 ABC transporter BN112_3250 PF02405 Permease MlaE BN112_3253 PF03309 Type III pantothenate kinase BN112_3254 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BN112_3254 PF00534 Glycosyl transferases group 1 BN112_3255 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BN112_3256 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BN112_3256 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BN112_3257 PF00132 Bacterial transferase hexapeptide (six repeats) BN112_3258 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BN112_3259 PF02350 UDP-N-acetylglucosamine 2-epimerase BN112_3261 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BN112_3262 PF02397 Bacterial sugar transferase BN112_3263 PF00862 Sucrose synthase BN112_3263 PF00534 Glycosyl transferases group 1 BN112_3264 PF10997 Alternate to MurJ BN112_3266 PF02719 Polysaccharide biosynthesis protein BN112_3267 PF13439 Glycosyltransferase Family 4 BN112_3267 PF00534 Glycosyl transferases group 1 BN112_3269 PF00733 Asparagine synthase BN112_3269 PF13537 Glutamine amidotransferase domain BN112_3272 PF16363 GDP-mannose 4,6 dehydratase BN112_3273 PF01370 NAD dependent epimerase/dehydratase family BN112_3274 PF16363 GDP-mannose 4,6 dehydratase BN112_3275 PF00733 Asparagine synthase BN112_3275 PF13537 Glutamine amidotransferase domain BN112_3279 PF00005 ABC transporter BN112_3279 PF14524 Wzt C-terminal domain BN112_3280 PF14524 Wzt C-terminal domain BN112_3280 PF00005 ABC transporter BN112_3283 PF02911 Formyl transferase, C-terminal domain BN112_3283 PF00551 Formyl transferase BN112_3284 PF02911 Formyl transferase, C-terminal domain BN112_3284 PF00551 Formyl transferase BN112_3287 PF02911 Formyl transferase, C-terminal domain BN112_3287 PF00551 Formyl transferase BN112_3288 PF13537 Glutamine amidotransferase domain BN112_3288 PF00733 Asparagine synthase BN112_3289 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BN112_3290 PF16363 GDP-mannose 4,6 dehydratase BN112_3292 PF07690 Major Facilitator Superfamily BN112_3294 PF13091 PLD-like domain BN112_3295 PF03372 Endonuclease/Exonuclease/phosphatase family BN112_3296 PF02938 GAD domain BN112_3296 PF01336 OB-fold nucleic acid binding domain BN112_3296 PF00152 tRNA synthetases class II (D, K and N) BN112_3300 PF00732 GMC oxidoreductase BN112_3300 PF05199 GMC oxidoreductase BN112_3303 PF13520 Amino acid permease BN112_3309 PF07979 Intimin C-type lectin domain BN112_3309 PF09134 Invasin, domain 3 BN112_3309 PF02369 Bacterial Ig-like domain (group 1) BN112_3309 PF11924 Inverse autotransporter, beta-domain BN112_3310 PF00701 Dihydrodipicolinate synthetase family BN112_3311 PF13185 GAF domain BN112_3312 PF00155 Aminotransferase class I and II BN112_3313 PF01040 UbiA prenyltransferase family BN112_3316 PF00392 Bacterial regulatory proteins, gntR family BN112_3316 PF07729 FCD domain BN112_3317 PF01274 Malate synthase BN112_3321 PF00005 ABC transporter BN112_3322 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3324 PF03466 LysR substrate binding domain BN112_3326 PF00534 Glycosyl transferases group 1 BN112_3326 PF13439 Glycosyltransferase Family 4 BN112_3327 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3328 PF01979 Amidohydrolase family BN112_3329 PF03466 LysR substrate binding domain BN112_3329 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3331 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3332 PF03328 HpcH/HpaI aldolase/citrate lyase family BN112_3334 PF07715 TonB-dependent Receptor Plug Domain BN112_3334 PF00593 TonB dependent receptor BN112_3335 PF00436 Single-strand binding protein family BN112_3336 PF07690 Major Facilitator Superfamily BN112_3337 PF17760 UvrA interaction domain BN112_3337 PF17755 UvrA DNA-binding domain BN112_3338 PF00043 Glutathione S-transferase, C-terminal domain BN112_3338 PF13417 Glutathione S-transferase, N-terminal domain BN112_3339 PF01966 HD domain BN112_3339 PF13286 Phosphohydrolase-associated domain BN112_3340 PF01761 3-dehydroquinate synthase BN112_3341 PF01202 Shikimate kinase BN112_3342 PF17092 Penicillin-binding protein OB-like domain BN112_3342 PF00905 Penicillin binding protein transpeptidase domain BN112_3342 PF00912 Transglycosylase BN112_3343 PF01491 Frataxin-like domain BN112_3344 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BN112_3344 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BN112_3345 PF01578 Cytochrome C assembly protein BN112_3346 PF05140 ResB-like family BN112_3347 PF00034 Cytochrome c BN112_3348 PF01926 50S ribosome-binding GTPase BN112_3349 PF00490 Delta-aminolevulinic acid dehydratase BN112_3350 PF00892 EamA-like transporter family BN112_3351 PF02683 Cytochrome C biogenesis protein transmembrane region BN112_3351 PF11412 Disulphide bond corrector protein DsbC BN112_3352 PF03091 CutA1 divalent ion tolerance protein BN112_3353 PF01230 HIT domain BN112_3354 PF01196 Ribosomal protein L17 BN112_3355 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BN112_3355 PF01000 RNA polymerase Rpb3/RpoA insert domain BN112_3355 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BN112_3356 PF01479 S4 domain BN112_3356 PF00163 Ribosomal protein S4/S9 N-terminal domain BN112_3357 PF00411 Ribosomal protein S11 BN112_3358 PF00416 Ribosomal protein S13/S18 BN112_3359 PF00444 Ribosomal protein L36 BN112_3360 PF01176 Translation initiation factor 1A / IF-1 BN112_3361 PF00344 SecY translocase BN112_3362 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BN112_3363 PF00327 Ribosomal protein L30p/L7e BN112_3364 PF03719 Ribosomal protein S5, C-terminal domain BN112_3364 PF00333 Ribosomal protein S5, N-terminal domain BN112_3365 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BN112_3366 PF00347 Ribosomal protein L6 BN112_3367 PF00410 Ribosomal protein S8 BN112_3368 PF00253 Ribosomal protein S14p/S29e BN112_3369 PF00281 Ribosomal protein L5 BN112_3369 PF00673 ribosomal L5P family C-terminus BN112_3370 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BN112_3371 PF00238 Ribosomal protein L14p/L23e BN112_3372 PF00171 Aldehyde dehydrogenase family BN112_3374 PF00366 Ribosomal protein S17 BN112_3375 PF00831 Ribosomal L29 protein BN112_3376 PF00252 Ribosomal protein L16p/L10e BN112_3377 PF00189 Ribosomal protein S3, C-terminal domain BN112_3377 PF07650 KH domain BN112_3378 PF00237 Ribosomal protein L22p/L17e BN112_3379 PF00203 Ribosomal protein S19 BN112_3380 PF00181 Ribosomal Proteins L2, RNA binding domain BN112_3380 PF03947 Ribosomal Proteins L2, C-terminal domain BN112_3381 PF00276 Ribosomal protein L23 BN112_3382 PF00573 Ribosomal protein L4/L1 family BN112_3383 PF00297 Ribosomal protein L3 BN112_3384 PF00338 Ribosomal protein S10p/S20e BN112_3385 PF03144 Elongation factor Tu domain 2 BN112_3385 PF00009 Elongation factor Tu GTP binding domain BN112_3385 PF03143 Elongation factor Tu C-terminal domain BN112_3386 PF00009 Elongation factor Tu GTP binding domain BN112_3386 PF00679 Elongation factor G C-terminus BN112_3386 PF14492 Elongation Factor G, domain II BN112_3386 PF03144 Elongation factor Tu domain 2 BN112_3386 PF03764 Elongation factor G, domain IV BN112_3387 PF00177 Ribosomal protein S7p/S5e BN112_3388 PF00164 Ribosomal protein S12/S23 BN112_3389 PF02583 Metal-sensitive transcriptional repressor BN112_3390 PF01545 Cation efflux family BN112_3391 PF00486 Transcriptional regulatory protein, C terminal BN112_3391 PF00072 Response regulator receiver domain BN112_3392 PF00072 Response regulator receiver domain BN112_3392 PF00486 Transcriptional regulatory protein, C terminal BN112_3394 PF00512 His Kinase A (phospho-acceptor) domain BN112_3394 PF11808 Phosphate regulon sensor protein PhoR BN112_3394 PF00989 PAS fold BN112_3394 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_3397 PF00623 RNA polymerase Rpb1, domain 2 BN112_3397 PF04997 RNA polymerase Rpb1, domain 1 BN112_3397 PF05000 RNA polymerase Rpb1, domain 4 BN112_3397 PF04998 RNA polymerase Rpb1, domain 5 BN112_3397 PF04983 RNA polymerase Rpb1, domain 3 BN112_3398 PF04560 RNA polymerase Rpb2, domain 7 BN112_3398 PF10385 RNA polymerase beta subunit external 1 domain BN112_3398 PF04565 RNA polymerase Rpb2, domain 3 BN112_3398 PF04561 RNA polymerase Rpb2, domain 2 BN112_3398 PF04563 RNA polymerase beta subunit BN112_3398 PF00562 RNA polymerase Rpb2, domain 6 BN112_3399 PF00542 Ribosomal protein L7/L12 C-terminal domain BN112_3399 PF16320 Ribosomal protein L7/L12 dimerisation domain BN112_3400 PF00466 Ribosomal protein L10 BN112_3401 PF00687 Ribosomal protein L1p/L10e family BN112_3402 PF00298 Ribosomal protein L11, RNA binding domain BN112_3402 PF03946 Ribosomal protein L11, N-terminal domain BN112_3403 PF02357 Transcription termination factor nusG BN112_3403 PF00467 KOW motif BN112_3404 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BN112_3405 PF00009 Elongation factor Tu GTP binding domain BN112_3405 PF03143 Elongation factor Tu C-terminal domain BN112_3405 PF03144 Elongation factor Tu domain 2 BN112_3406 PF00710 Asparaginase, N-terminal BN112_3406 PF17763 Glutaminase/Asparaginase C-terminal domain BN112_3407 PF17762 HTH domain found in ParB protein BN112_3407 PF02195 ParB-like nuclease domain BN112_3409 PF13614 AAA domain BN112_3410 PF02527 rRNA small subunit methyltransferase G BN112_3411 PF01134 Glucose inhibited division protein A BN112_3411 PF13932 GidA associated domain BN112_3412 PF00313 'Cold-shock' DNA-binding domain BN112_3413 PF00155 Aminotransferase class I and II BN112_3414 PF01970 Tripartite tricarboxylate transporter TctA family BN112_3417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_3417 PF00512 His Kinase A (phospho-acceptor) domain BN112_3418 PF00072 Response regulator receiver domain BN112_3418 PF00486 Transcriptional regulatory protein, C terminal BN112_3420 PF10396 GTP-binding protein TrmE N-terminus BN112_3420 PF01926 50S ribosome-binding GTPase BN112_3420 PF12631 MnmE helical domain BN112_3421 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_3422 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3423 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_3423 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3424 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_3424 PF00005 ABC transporter BN112_3425 PF00005 ABC transporter BN112_3425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_3426 PF07687 Peptidase dimerisation domain BN112_3426 PF01546 Peptidase family M20/M25/M40 BN112_3427 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BN112_3429 PF00005 ABC transporter BN112_3430 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3431 PF00199 Catalase BN112_3431 PF06628 Catalase-related immune-responsive BN112_3432 PF02096 60Kd inner membrane protein BN112_3432 PF14849 YidC periplasmic domain BN112_3433 PF01809 Putative membrane protein insertion efficiency factor BN112_3434 PF00825 Ribonuclease P BN112_3435 PF00468 Ribosomal protein L34 BN112_3436 PF00308 Bacterial dnaA protein BN112_3436 PF08299 Bacterial dnaA protein helix-turn-helix BN112_3436 PF11638 DnaA N-terminal domain BN112_3437 PF02768 DNA polymerase III beta subunit, C-terminal domain BN112_3437 PF02767 DNA polymerase III beta subunit, central domain BN112_3437 PF00712 DNA polymerase III beta subunit, N-terminal domain BN112_3438 PF00204 DNA gyrase B BN112_3438 PF00986 DNA gyrase B subunit, carboxyl terminus BN112_3438 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_3438 PF01751 Toprim domain BN112_3438 PF18053 DNA gyrase B subunit insert domain BN112_3441 PF01614 Bacterial transcriptional regulator BN112_3441 PF09339 IclR helix-turn-helix domain BN112_3442 PF01425 Amidase BN112_3443 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3444 PF00708 Acylphosphatase BN112_3445 PF01070 FMN-dependent dehydrogenase BN112_3448 PF13673 Acetyltransferase (GNAT) domain BN112_3450 PF02558 Ketopantoate reductase PanE/ApbA BN112_3450 PF08546 Ketopantoate reductase PanE/ApbA C terminal BN112_3454 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BN112_3456 PF01062 Bestrophin, RFP-TM, chloride channel BN112_3457 PF01037 Lrp/AsnC ligand binding domain BN112_3458 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_3458 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_3458 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_3460 PF00171 Aldehyde dehydrogenase family BN112_3462 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3463 PF00005 ABC transporter BN112_3465 PF01751 Toprim domain BN112_3465 PF01131 DNA topoisomerase BN112_3467 PF00749 tRNA synthetases class I (E and Q), catalytic domain BN112_3468 PF04361 Protein of unknown function (DUF494) BN112_3469 PF00593 TonB dependent receptor BN112_3469 PF07715 TonB-dependent Receptor Plug Domain BN112_3471 PF16868 NMT1-like family BN112_3472 PF01168 Alanine racemase, N-terminal domain BN112_3472 PF14031 Putative serine dehydratase domain BN112_3473 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3474 PF00202 Aminotransferase class-III BN112_3476 PF00364 Biotin-requiring enzyme BN112_3476 PF00289 Biotin carboxylase, N-terminal domain BN112_3476 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BN112_3476 PF02785 Biotin carboxylase C-terminal domain BN112_3477 PF01039 Carboxyl transferase domain BN112_3478 PF00108 Thiolase, N-terminal domain BN112_3478 PF02803 Thiolase, C-terminal domain BN112_3479 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BN112_3480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_3480 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_3480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_3481 PF00376 MerR family regulatory protein BN112_3481 PF09278 MerR, DNA binding BN112_3483 PF01810 LysE type translocator BN112_3484 PF01053 Cys/Met metabolism PLP-dependent enzyme BN112_3485 PF00085 Thioredoxin BN112_3485 PF01323 DSBA-like thioredoxin domain BN112_3487 PF00750 tRNA synthetases class I (R) BN112_3487 PF05746 DALR anticodon binding domain BN112_3487 PF03485 Arginyl tRNA synthetase N terminal domain BN112_3490 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3491 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3492 PF13416 Bacterial extracellular solute-binding protein BN112_3493 PF17912 MalK OB fold domain BN112_3493 PF00005 ABC transporter BN112_3494 PF00149 Calcineurin-like phosphoesterase BN112_3495 PF12857 TOBE-like domain BN112_3495 PF00005 ABC transporter BN112_3496 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3499 PF00356 Bacterial regulatory proteins, lacI family BN112_3500 PF01425 Amidase BN112_3501 PF08502 LeuA allosteric (dimerisation) domain BN112_3501 PF00682 HMGL-like BN112_3503 PF04552 Sigma-54, DNA binding domain BN112_3503 PF04963 Sigma-54 factor, core binding domain BN112_3503 PF00309 Sigma-54 factor, Activator interacting domain (AID) BN112_3505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3505 PF03466 LysR substrate binding domain BN112_3507 PF00210 Ferritin-like domain BN112_3509 PF00009 Elongation factor Tu GTP binding domain BN112_3509 PF16658 Class II release factor RF3, C-terminal domain BN112_3509 PF03144 Elongation factor Tu domain 2 BN112_3510 PF01810 LysE type translocator BN112_3511 PF00271 Helicase conserved C-terminal domain BN112_3511 PF00270 DEAD/DEAH box helicase BN112_3513 PF04536 TPM domain BN112_3514 PF00005 ABC transporter BN112_3514 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_3515 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_3515 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3516 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3517 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_3518 PF01926 50S ribosome-binding GTPase BN112_3518 PF12631 MnmE helical domain BN112_3518 PF10396 GTP-binding protein TrmE N-terminus BN112_3522 PF00892 EamA-like transporter family BN112_3523 PF00437 Type II/IV secretion system protein BN112_3524 PF03743 Bacterial conjugation TrbI-like protein BN112_3525 PF03524 Conjugal transfer protein BN112_3526 PF04335 VirB8 protein BN112_3528 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BN112_3529 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BN112_3530 PF05101 Type IV secretory pathway, VirB3-like protein BN112_3531 PF04956 TrbC/VIRB2 family BN112_3532 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain BN112_3532 PF03440 Aerolysin/Pertussis toxin (APT) domain BN112_3533 PF09276 Pertussis toxin S5 subunit BN112_3534 PF09275 Pertussis toxin S4 subunit BN112_3535 PF03440 Aerolysin/Pertussis toxin (APT) domain BN112_3535 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain BN112_3536 PF02917 Pertussis toxin, subunit 1 BN112_3537 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3540 PF02515 CoA-transferase family III BN112_3541 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3542 PF02515 CoA-transferase family III BN112_3545 PF09339 IclR helix-turn-helix domain BN112_3546 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_3547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3547 PF03466 LysR substrate binding domain BN112_3548 PF04909 Amidohydrolase BN112_3549 PF12146 Serine aminopeptidase, S33 BN112_3550 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3556 PF04386 Stringent starvation protein B BN112_3557 PF02798 Glutathione S-transferase, N-terminal domain BN112_3557 PF00043 Glutathione S-transferase, C-terminal domain BN112_3558 PF02167 Cytochrome C1 family BN112_3559 PF00033 Cytochrome b/b6/petB BN112_3559 PF00032 Cytochrome b(C-terminal)/b6/petD BN112_3560 PF00355 Rieske [2Fe-2S] domain BN112_3560 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BN112_3561 PF01741 Large-conductance mechanosensitive channel, MscL BN112_3562 PF01784 NIF3 (NGG1p interacting factor 3) BN112_3563 PF13180 PDZ domain BN112_3565 PF00902 Sec-independent protein translocase protein (TatC) BN112_3566 PF02416 mttA/Hcf106 family BN112_3567 PF02416 mttA/Hcf106 family BN112_3568 PF01230 HIT domain BN112_3569 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BN112_3570 PF01502 Phosphoribosyl-AMP cyclohydrolase BN112_3571 PF00977 Histidine biosynthesis protein BN112_3572 PF00977 Histidine biosynthesis protein BN112_3573 PF00117 Glutamine amidotransferase class-I BN112_3574 PF00475 Imidazoleglycerol-phosphate dehydratase BN112_3575 PF00155 Aminotransferase class I and II BN112_3576 PF00815 Histidinol dehydrogenase BN112_3577 PF01634 ATP phosphoribosyltransferase BN112_3578 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BN112_3580 PF01061 ABC-2 type transporter BN112_3581 PF00005 ABC transporter BN112_3583 PF04333 MlaA lipoprotein BN112_3584 PF02470 MlaD protein BN112_3585 PF02405 Permease MlaE BN112_3586 PF00005 ABC transporter BN112_3587 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3588 PF03922 OmpW family BN112_3589 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BN112_3589 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_3590 PF01493 GXGXG motif BN112_3590 PF04898 Glutamate synthase central domain BN112_3590 PF00310 Glutamine amidotransferases class-II BN112_3590 PF01645 Conserved region in glutamate synthase BN112_3592 PF00107 Zinc-binding dehydrogenase BN112_3592 PF08240 Alcohol dehydrogenase GroES-like domain BN112_3593 PF00756 Putative esterase BN112_3595 PF04545 Sigma-70, region 4 BN112_3595 PF04542 Sigma-70 region 2 BN112_3595 PF00140 Sigma-70 factor, region 1.2 BN112_3596 PF00149 Calcineurin-like phosphoesterase BN112_3597 PF00999 Sodium/hydrogen exchanger family BN112_3599 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BN112_3599 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BN112_3600 PF00115 Cytochrome C and Quinol oxidase polypeptide I BN112_3603 PF00510 Cytochrome c oxidase subunit III BN112_3607 PF02628 Cytochrome oxidase assembly protein BN112_3608 PF01040 UbiA prenyltransferase family BN112_3609 PF02630 SCO1/SenC BN112_3613 PF12804 MobA-like NTP transferase domain BN112_3613 PF14602 Hexapeptide repeat of succinyl-transferase BN112_3613 PF00132 Bacterial transferase hexapeptide (six repeats) BN112_3614 PF07690 Major Facilitator Superfamily BN112_3615 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BN112_3615 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BN112_3615 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BN112_3617 PF12833 Helix-turn-helix domain BN112_3617 PF06445 GyrI-like small molecule binding domain BN112_3619 PF01037 Lrp/AsnC ligand binding domain BN112_3620 PF01380 SIS domain BN112_3621 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BN112_3622 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3624 PF00378 Enoyl-CoA hydratase/isomerase BN112_3625 PF13607 Succinyl-CoA ligase like flavodoxin domain BN112_3625 PF13380 CoA binding domain BN112_3626 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3626 PF03466 LysR substrate binding domain BN112_3627 PF00107 Zinc-binding dehydrogenase BN112_3627 PF08240 Alcohol dehydrogenase GroES-like domain BN112_3629 PF01042 Endoribonuclease L-PSP BN112_3631 PF07687 Peptidase dimerisation domain BN112_3631 PF01546 Peptidase family M20/M25/M40 BN112_3632 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3633 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_3633 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_3633 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_3634 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_3634 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_3634 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_3635 PF01565 FAD binding domain BN112_3635 PF09330 D-lactate dehydrogenase, membrane binding BN112_3636 PF03466 LysR substrate binding domain BN112_3636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3637 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3638 PF00330 Aconitase family (aconitate hydratase) BN112_3640 PF03466 LysR substrate binding domain BN112_3640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3641 PF03447 Homoserine dehydrogenase, NAD binding domain BN112_3641 PF01958 Domain of unknown function DUF108 BN112_3644 PF03737 Aldolase/RraA BN112_3645 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BN112_3645 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BN112_3646 PF08402 TOBE domain BN112_3646 PF00005 ABC transporter BN112_3647 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3649 PF00355 Rieske [2Fe-2S] domain BN112_3650 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_3650 PF00175 Oxidoreductase NAD-binding domain BN112_3651 PF12697 Alpha/beta hydrolase family BN112_3654 PF02515 CoA-transferase family III BN112_3655 PF01575 MaoC like domain BN112_3656 PF00108 Thiolase, N-terminal domain BN112_3656 PF02803 Thiolase, C-terminal domain BN112_3657 PF02515 CoA-transferase family III BN112_3660 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3661 PF00593 TonB dependent receptor BN112_3661 PF07715 TonB-dependent Receptor Plug Domain BN112_3662 PF01012 Electron transfer flavoprotein domain BN112_3662 PF00766 Electron transfer flavoprotein FAD-binding domain BN112_3663 PF01012 Electron transfer flavoprotein domain BN112_3664 PF12802 MarR family BN112_3665 PF00378 Enoyl-CoA hydratase/isomerase BN112_3666 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BN112_3666 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_3667 PF00378 Enoyl-CoA hydratase/isomerase BN112_3668 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3669 PF02515 CoA-transferase family III BN112_3670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_3670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_3670 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_3673 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3674 PF08240 Alcohol dehydrogenase GroES-like domain BN112_3674 PF00107 Zinc-binding dehydrogenase BN112_3675 PF01614 Bacterial transcriptional regulator BN112_3675 PF09339 IclR helix-turn-helix domain BN112_3676 PF02515 CoA-transferase family III BN112_3678 PF07715 TonB-dependent Receptor Plug Domain BN112_3678 PF00593 TonB dependent receptor BN112_3684 PF02769 AIR synthase related protein, C-terminal domain BN112_3684 PF00586 AIR synthase related protein, N-terminal domain BN112_3686 PF00155 Aminotransferase class I and II BN112_3687 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BN112_3687 PF00289 Biotin carboxylase, N-terminal domain BN112_3687 PF02785 Biotin carboxylase C-terminal domain BN112_3688 PF00364 Biotin-requiring enzyme BN112_3691 PF01842 ACT domain BN112_3691 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BN112_3691 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BN112_3692 PF01546 Peptidase family M20/M25/M40 BN112_3693 PF00005 ABC transporter BN112_3693 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_3694 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_3694 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3695 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3696 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_3697 PF03746 LamB/YcsF family BN112_3698 PF02626 Carboxyltransferase domain, subdomain A and B BN112_3699 PF02682 Carboxyltransferase domain, subdomain C and D BN112_3700 PF00155 Aminotransferase class I and II BN112_3702 PF00701 Dihydrodipicolinate synthetase family BN112_3703 PF03466 LysR substrate binding domain BN112_3703 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3704 PF02515 CoA-transferase family III BN112_3705 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3706 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_3706 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_3706 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_3707 PF01575 MaoC like domain BN112_3710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BN112_3710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BN112_3711 PF00378 Enoyl-CoA hydratase/isomerase BN112_3712 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_3712 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_3712 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_3713 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3714 PF13380 CoA binding domain BN112_3714 PF13607 Succinyl-CoA ligase like flavodoxin domain BN112_3717 PF00676 Dehydrogenase E1 component BN112_3718 PF02779 Transketolase, pyrimidine binding domain BN112_3718 PF02780 Transketolase, C-terminal domain BN112_3719 PF00378 Enoyl-CoA hydratase/isomerase BN112_3720 PF02817 e3 binding domain BN112_3720 PF00364 Biotin-requiring enzyme BN112_3720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BN112_3721 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_3721 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_3721 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_3722 PF13193 AMP-binding enzyme C-terminal domain BN112_3722 PF00501 AMP-binding enzyme BN112_3724 PF13458 Periplasmic binding protein BN112_3725 PF02653 Branched-chain amino acid transport system / permease component BN112_3726 PF00005 ABC transporter BN112_3726 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_3727 PF00005 ABC transporter BN112_3728 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_3728 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BN112_3731 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3732 PF00890 FAD binding domain BN112_3734 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3736 PF13378 Enolase C-terminal domain-like BN112_3736 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BN112_3738 PF00392 Bacterial regulatory proteins, gntR family BN112_3738 PF07729 FCD domain BN112_3739 PF02615 Malate/L-lactate dehydrogenase BN112_3740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3740 PF03466 LysR substrate binding domain BN112_3741 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3743 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3745 PF02515 CoA-transferase family III BN112_3747 PF03466 LysR substrate binding domain BN112_3747 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3748 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3749 PF00115 Cytochrome C and Quinol oxidase polypeptide I BN112_3751 PF07729 FCD domain BN112_3751 PF00392 Bacterial regulatory proteins, gntR family BN112_3752 PF00266 Aminotransferase class-V BN112_3754 PF12706 Beta-lactamase superfamily domain BN112_3755 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3756 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3756 PF03466 LysR substrate binding domain BN112_3757 PF11737 Protein of unknown function (DUF3300) BN112_3759 PF00990 Diguanylate cyclase, GGDEF domain BN112_3759 PF03707 Bacterial signalling protein N terminal repeat BN112_3759 PF00563 EAL domain BN112_3760 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BN112_3760 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BN112_3761 PF13532 2OG-Fe(II) oxygenase superfamily BN112_3762 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA BN112_3763 PF04463 Protein of unknown function (DUF523) BN112_3764 PF00005 ABC transporter BN112_3765 PF01032 FecCD transport family BN112_3766 PF01497 Periplasmic binding protein BN112_3767 PF05171 Haemin-degrading HemS.ChuX domain BN112_3768 PF07715 TonB-dependent Receptor Plug Domain BN112_3768 PF00593 TonB dependent receptor BN112_3768 PF04886 PT repeat BN112_3769 PF04773 FecR protein BN112_3769 PF16220 Domain of unknown function (DUF4880) BN112_3770 PF08281 Sigma-70, region 4 BN112_3770 PF04542 Sigma-70 region 2 BN112_3775 PF02423 Ornithine cyclodeaminase/mu-crystallin family BN112_3776 PF07729 FCD domain BN112_3776 PF00392 Bacterial regulatory proteins, gntR family BN112_3780 PF00171 Aldehyde dehydrogenase family BN112_3782 PF00970 Oxidoreductase FAD-binding domain BN112_3782 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_3782 PF00175 Oxidoreductase NAD-binding domain BN112_3787 PF03061 Thioesterase superfamily BN112_3789 PF00753 Metallo-beta-lactamase superfamily BN112_3790 PF03466 LysR substrate binding domain BN112_3790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3792 PF01323 DSBA-like thioredoxin domain BN112_3794 PF00218 Indole-3-glycerol phosphate synthase BN112_3795 PF02885 Glycosyl transferase family, helical bundle domain BN112_3795 PF00591 Glycosyl transferase family, a/b domain BN112_3796 PF00117 Glutamine amidotransferase class-I BN112_3797 PF00425 chorismate binding enzyme BN112_3797 PF04715 Anthranilate synthase component I, N terminal region BN112_3798 PF13419 Haloacid dehalogenase-like hydrolase BN112_3799 PF00834 Ribulose-phosphate 3 epimerase family BN112_3800 PF04379 ApaG domain BN112_3801 PF03562 MltA specific insert domain BN112_3801 PF06725 3D domain BN112_3802 PF01494 FAD binding domain BN112_3803 PF13098 Thioredoxin-like domain BN112_3803 PF10411 Disulfide bond isomerase protein N-terminus BN112_3804 PF01842 ACT domain BN112_3804 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BN112_3804 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BN112_3805 PF01171 PP-loop family BN112_3807 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_3809 PF00378 Enoyl-CoA hydratase/isomerase BN112_3812 PF00119 ATP synthase A chain BN112_3813 PF00137 ATP synthase subunit C BN112_3814 PF00430 ATP synthase B/B' CF(0) BN112_3815 PF00213 ATP synthase delta (OSCP) subunit BN112_3816 PF02874 ATP synthase alpha/beta family, beta-barrel domain BN112_3816 PF00306 ATP synthase alpha/beta chain, C terminal domain BN112_3816 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BN112_3817 PF00231 ATP synthase BN112_3818 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BN112_3818 PF02874 ATP synthase alpha/beta family, beta-barrel domain BN112_3819 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BN112_3821 PF01208 Uroporphyrinogen decarboxylase (URO-D) BN112_3822 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BN112_3822 PF18074 Primosomal protein N C-terminal domain BN112_3822 PF17764 3′ DNA-binding domain (3′BD) BN112_3822 PF00270 DEAD/DEAH box helicase BN112_3822 PF00271 Helicase conserved C-terminal domain BN112_3823 PF00580 UvrD/REP helicase N-terminal domain BN112_3823 PF13361 UvrD-like helicase C-terminal domain BN112_3824 PF07687 Peptidase dimerisation domain BN112_3824 PF01546 Peptidase family M20/M25/M40 BN112_3826 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_3826 PF00005 ABC transporter BN112_3827 PF00005 ABC transporter BN112_3827 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_3828 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_3828 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3829 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3831 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_3833 PF01256 Carbohydrate kinase BN112_3834 PF00378 Enoyl-CoA hydratase/isomerase BN112_3835 PF00378 Enoyl-CoA hydratase/isomerase BN112_3838 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_3838 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_3838 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_3839 PF02515 CoA-transferase family III BN112_3840 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain BN112_3840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BN112_3840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BN112_3841 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BN112_3843 PF07732 Multicopper oxidase BN112_3843 PF07731 Multicopper oxidase BN112_3843 PF00394 Multicopper oxidase BN112_3844 PF05275 Copper resistance protein B precursor (CopB) BN112_3846 PF02515 CoA-transferase family III BN112_3847 PF09339 IclR helix-turn-helix domain BN112_3847 PF01614 Bacterial transcriptional regulator BN112_3848 PF05995 Cysteine dioxygenase type I BN112_3849 PF01425 Amidase BN112_3850 PF13458 Periplasmic binding protein BN112_3851 PF00005 ABC transporter BN112_3852 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_3852 PF00005 ABC transporter BN112_3854 PF02653 Branched-chain amino acid transport system / permease component BN112_3855 PF00356 Bacterial regulatory proteins, lacI family BN112_3856 PF13609 Gram-negative porin BN112_3857 PF02548 Ketopantoate hydroxymethyltransferase BN112_3858 PF03466 LysR substrate binding domain BN112_3858 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3859 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3862 PF04262 Glutamate-cysteine ligase BN112_3863 PF00561 alpha/beta hydrolase fold BN112_3867 PF02615 Malate/L-lactate dehydrogenase BN112_3868 PF00561 alpha/beta hydrolase fold BN112_3869 PF00561 alpha/beta hydrolase fold BN112_3869 PF07021 Methionine biosynthesis protein MetW BN112_3870 PF07690 Major Facilitator Superfamily BN112_3871 PF13609 Gram-negative porin BN112_3872 PF01177 Asp/Glu/Hydantoin racemase BN112_3873 PF00005 ABC transporter BN112_3874 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3875 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3876 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_3877 PF00291 Pyridoxal-phosphate dependent enzyme BN112_3878 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3878 PF03466 LysR substrate binding domain BN112_3879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_3879 PF00512 His Kinase A (phospho-acceptor) domain BN112_3879 PF00672 HAMP domain BN112_3880 PF00072 Response regulator receiver domain BN112_3880 PF00486 Transcriptional regulatory protein, C terminal BN112_3882 PF00934 PE family BN112_3882 PF01436 NHL repeat BN112_3883 PF00180 Isocitrate/isopropylmalate dehydrogenase BN112_3884 PF03466 LysR substrate binding domain BN112_3884 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3886 PF03458 UPF0126 domain BN112_3887 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BN112_3887 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BN112_3888 PF03372 Endonuclease/Exonuclease/phosphatase family BN112_3889 PF00156 Phosphoribosyl transferase domain BN112_3890 PF02934 GatB/GatE catalytic domain BN112_3890 PF02637 GatB domain BN112_3891 PF01425 Amidase BN112_3892 PF02686 Glu-tRNAGln amidotransferase C subunit BN112_3894 PF04085 rod shape-determining protein MreC BN112_3896 PF03717 Penicillin-binding Protein dimerisation domain BN112_3896 PF00905 Penicillin binding protein transpeptidase domain BN112_3897 PF01098 Cell cycle protein BN112_3898 PF02615 Malate/L-lactate dehydrogenase BN112_3899 PF00939 Sodium:sulfate symporter transmembrane region BN112_3900 PF00440 Bacterial regulatory proteins, tetR family BN112_3902 PF00696 Amino acid kinase family BN112_3903 PF03180 NLPA lipoprotein BN112_3904 PF00578 AhpC/TSA family BN112_3905 PF04972 BON domain BN112_3906 PF13580 SIS domain BN112_3907 PF02021 Uncharacterised protein family UPF0102 BN112_3908 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BN112_3909 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BN112_3909 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BN112_3910 PF05036 Sporulation related domain BN112_3910 PF03330 Lytic transglycolase BN112_3911 PF03668 P-loop ATPase protein family BN112_3913 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BN112_3913 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BN112_3913 PF00034 Cytochrome c BN112_3914 PF07475 HPr Serine kinase C-terminal domain BN112_3914 PF02603 HPr Serine kinase N terminus BN112_3915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BN112_3916 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BN112_3917 PF00005 ABC transporter BN112_3921 PF00571 CBS domain BN112_3921 PF01380 SIS domain BN112_3922 PF02222 ATP-grasp domain BN112_3922 PF01370 NAD dependent epimerase/dehydratase family BN112_3924 PF01654 Cytochrome bd terminal oxidase subunit I BN112_3925 PF02322 Cytochrome bd terminal oxidase subunit II BN112_3926 PF08173 Membrane bound YbgT-like protein BN112_3927 PF00005 ABC transporter BN112_3927 PF00664 ABC transporter transmembrane region BN112_3928 PF00005 ABC transporter BN112_3928 PF00664 ABC transporter transmembrane region BN112_3929 PF00156 Phosphoribosyl transferase domain BN112_3930 PF03466 LysR substrate binding domain BN112_3930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3932 PF13609 Gram-negative porin BN112_3933 PF00585 C-terminal regulatory domain of Threonine dehydratase BN112_3933 PF00291 Pyridoxal-phosphate dependent enzyme BN112_3934 PF09335 SNARE associated Golgi protein BN112_3936 PF00392 Bacterial regulatory proteins, gntR family BN112_3936 PF07729 FCD domain BN112_3937 PF02515 CoA-transferase family III BN112_3938 PF07859 alpha/beta hydrolase fold BN112_3939 PF00378 Enoyl-CoA hydratase/isomerase BN112_3940 PF01494 FAD binding domain BN112_3941 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3943 PF03746 LamB/YcsF family BN112_3944 PF02626 Carboxyltransferase domain, subdomain A and B BN112_3945 PF02682 Carboxyltransferase domain, subdomain C and D BN112_3947 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_3947 PF03466 LysR substrate binding domain BN112_3948 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BN112_3948 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BN112_3948 PF01842 ACT domain BN112_3950 PF00512 His Kinase A (phospho-acceptor) domain BN112_3950 PF00672 HAMP domain BN112_3950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_3951 PF00072 Response regulator receiver domain BN112_3951 PF00486 Transcriptional regulatory protein, C terminal BN112_3952 PF11808 Phosphate regulon sensor protein PhoR BN112_3952 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_3952 PF00512 His Kinase A (phospho-acceptor) domain BN112_3952 PF00989 PAS fold BN112_3953 PF00072 Response regulator receiver domain BN112_3953 PF00486 Transcriptional regulatory protein, C terminal BN112_3954 PF01209 ubiE/COQ5 methyltransferase family BN112_3957 PF03109 ABC1 family BN112_3959 PF01467 Cytidylyltransferase-like BN112_3960 PF02321 Outer membrane efflux protein BN112_3962 PF08543 Phosphomethylpyrimidine kinase BN112_3963 PF05690 Thiazole biosynthesis protein ThiG BN112_3964 PF01497 Periplasmic binding protein BN112_3965 PF07715 TonB-dependent Receptor Plug Domain BN112_3965 PF00593 TonB dependent receptor BN112_3966 PF02607 B12 binding domain BN112_3966 PF02310 B12 binding domain BN112_3966 PF00809 Pterin binding enzyme BN112_3966 PF02574 Homocysteine S-methyltransferase BN112_3966 PF02965 Vitamin B12 dependent methionine synthase, activation domain BN112_3967 PF08241 Methyltransferase domain BN112_3969 PF00633 Helix-hairpin-helix motif BN112_3969 PF10576 Iron-sulfur binding domain of endonuclease III BN112_3969 PF00730 HhH-GPD superfamily base excision DNA repair protein BN112_3969 PF14815 NUDIX domain BN112_3971 PF03975 CheD chemotactic sensory transduction BN112_3972 PF18075 FtsX extracellular domain BN112_3973 PF00005 ABC transporter BN112_3974 PF00497 Bacterial extracellular solute-binding proteins, family 3 BN112_3975 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3976 PF00528 Binding-protein-dependent transport system inner membrane component BN112_3977 PF00005 ABC transporter BN112_3978 PF03401 Tripartite tricarboxylate transporter family receptor BN112_3980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BN112_3980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BN112_3981 PF07690 Major Facilitator Superfamily BN112_3983 PF02616 Segregation and condensation protein ScpA BN112_3984 PF02569 Pantoate-beta-alanine ligase BN112_3987 PF06750 Bacterial Peptidase A24 N-terminal domain BN112_3987 PF01478 Type IV leader peptidase family BN112_3988 PF01121 Dephospho-CoA kinase BN112_3989 PF07072 Cell division protein BN112_3990 PF13533 Biotin-lipoyl like BN112_3991 PF00873 AcrB/AcrD/AcrF family BN112_3992 PF00873 AcrB/AcrD/AcrF family BN112_3993 PF02321 Outer membrane efflux protein BN112_3994 PF00293 NUDIX domain BN112_3996 PF01960 ArgJ family BN112_3999 PF07859 alpha/beta hydrolase fold BN112_4001 PF02653 Branched-chain amino acid transport system / permease component BN112_4002 PF11862 Domain of unknown function (DUF3382) BN112_4002 PF02653 Branched-chain amino acid transport system / permease component BN112_4003 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_4003 PF00005 ABC transporter BN112_4004 PF00005 ABC transporter BN112_4005 PF01494 FAD binding domain BN112_4006 PF00106 short chain dehydrogenase BN112_4007 PF00378 Enoyl-CoA hydratase/isomerase BN112_4008 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_4008 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_4008 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_4009 PF00501 AMP-binding enzyme BN112_4009 PF13193 AMP-binding enzyme C-terminal domain BN112_4013 PF00202 Aminotransferase class-III BN112_4014 PF02581 Thiamine monophosphate synthase BN112_4015 PF08543 Phosphomethylpyrimidine kinase BN112_4016 PF00301 Rubredoxin BN112_4017 PF02622 Uncharacterized ACR, COG1678 BN112_4018 PF03652 Holliday junction resolvase BN112_4019 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BN112_4019 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BN112_4020 PF01979 Amidohydrolase family BN112_4021 PF01553 Acyltransferase BN112_4022 PF00149 Calcineurin-like phosphoesterase BN112_4024 PF00912 Transglycosylase BN112_4025 PF01488 Shikimate / quinate 5-dehydrogenase BN112_4025 PF08501 Shikimate dehydrogenase substrate binding domain BN112_4025 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BN112_4027 PF00773 RNB domain BN112_4028 PF05728 Uncharacterised protein family (UPF0227) BN112_4029 PF01225 Mur ligase family, catalytic domain BN112_4029 PF02875 Mur ligase family, glutamate ligase domain BN112_4029 PF08245 Mur ligase middle domain BN112_4030 PF08534 Redoxin BN112_4031 PF01220 Dehydroquinase class II BN112_4032 PF00364 Biotin-requiring enzyme BN112_4033 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BN112_4033 PF00289 Biotin carboxylase, N-terminal domain BN112_4033 PF02785 Biotin carboxylase C-terminal domain BN112_4036 PF00294 pfkB family carbohydrate kinase BN112_4041 PF03062 MBOAT, membrane-bound O-acyltransferase family BN112_4042 PF13193 AMP-binding enzyme C-terminal domain BN112_4042 PF00501 AMP-binding enzyme BN112_4045 PF00268 Ribonucleotide reductase, small chain BN112_4046 PF00317 Ribonucleotide reductase, all-alpha domain BN112_4046 PF02867 Ribonucleotide reductase, barrel domain BN112_4046 PF03477 ATP cone domain BN112_4048 PF01037 Lrp/AsnC ligand binding domain BN112_4051 PF00749 tRNA synthetases class I (E and Q), catalytic domain BN112_4052 PF13380 CoA binding domain BN112_4052 PF13607 Succinyl-CoA ligase like flavodoxin domain BN112_4052 PF00583 Acetyltransferase (GNAT) family BN112_4053 PF07729 FCD domain BN112_4053 PF00392 Bacterial regulatory proteins, gntR family BN112_4055 PF00271 Helicase conserved C-terminal domain BN112_4055 PF03880 DbpA RNA binding domain BN112_4055 PF00270 DEAD/DEAH box helicase BN112_4056 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BN112_4057 PF00857 Isochorismatase family BN112_4058 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4059 PF00005 ABC transporter BN112_4061 PF02230 Phospholipase/Carboxylesterase BN112_4062 PF04751 Protein of unknown function (DUF615) BN112_4063 PF01523 Putative modulator of DNA gyrase BN112_4064 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_4065 PF00572 Ribosomal protein L13 BN112_4066 PF00380 Ribosomal protein S9/S16 BN112_4067 PF02774 Semialdehyde dehydrogenase, dimerisation domain BN112_4067 PF01118 Semialdehyde dehydrogenase, NAD binding domain BN112_4069 PF01521 Iron-sulphur cluster biosynthesis BN112_4070 PF03702 Anhydro-N-acetylmuramic acid kinase BN112_4071 PF01551 Peptidase family M23 BN112_4071 PF08460 Bacterial SH3 domain BN112_4072 PF00579 tRNA synthetases class I (W and Y) BN112_4072 PF01479 S4 domain BN112_4074 PF00464 Serine hydroxymethyltransferase BN112_4075 PF03477 ATP cone domain BN112_4076 PF12833 Helix-turn-helix domain BN112_4076 PF01965 DJ-1/PfpI family BN112_4078 PF01872 RibD C-terminal domain BN112_4078 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BN112_4079 PF08298 PrkA AAA domain BN112_4079 PF06798 PrkA serine protein kinase C-terminal domain BN112_4080 PF04285 Protein of unknown function (DUF444) BN112_4081 PF04293 SpoVR like protein BN112_4084 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4085 PF07476 Methylaspartate ammonia-lyase C-terminus BN112_4085 PF05034 Methylaspartate ammonia-lyase N-terminus BN112_4086 PF00392 Bacterial regulatory proteins, gntR family BN112_4086 PF07702 UTRA domain BN112_4088 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_4090 PF01774 UreD urease accessory protein BN112_4091 PF00547 Urease, gamma subunit BN112_4092 PF04955 HupE / UreJ protein BN112_4093 PF00699 Urease beta subunit BN112_4094 PF01979 Amidohydrolase family BN112_4094 PF00449 Urease alpha-subunit, N-terminal domain BN112_4095 PF02814 UreE urease accessory protein, N-terminal domain BN112_4095 PF05194 UreE urease accessory protein, C-terminal domain BN112_4096 PF01730 UreF BN112_4096 PF05194 UreE urease accessory protein, C-terminal domain BN112_4096 PF02814 UreE urease accessory protein, N-terminal domain BN112_4097 PF02492 CobW/HypB/UreG, nucleotide-binding domain BN112_4098 PF00171 Aldehyde dehydrogenase family BN112_4099 PF00355 Rieske [2Fe-2S] domain BN112_4100 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_4100 PF00970 Oxidoreductase FAD-binding domain BN112_4100 PF00175 Oxidoreductase NAD-binding domain BN112_4101 PF05199 GMC oxidoreductase BN112_4101 PF00732 GMC oxidoreductase BN112_4102 PF12411 Choline sulfatase enzyme C terminal BN112_4102 PF00884 Sulfatase BN112_4104 PF07702 UTRA domain BN112_4104 PF00392 Bacterial regulatory proteins, gntR family BN112_4105 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4107 PF07702 UTRA domain BN112_4107 PF00392 Bacterial regulatory proteins, gntR family BN112_4108 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4110 PF00005 ABC transporter BN112_4111 PF00378 Enoyl-CoA hydratase/isomerase BN112_4112 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4113 PF00109 Beta-ketoacyl synthase, N-terminal domain BN112_4113 PF08990 Erythronolide synthase docking BN112_4113 PF00550 Phosphopantetheine attachment site BN112_4113 PF08240 Alcohol dehydrogenase GroES-like domain BN112_4113 PF16197 Ketoacyl-synthetase C-terminal extension BN112_4113 PF14765 Polyketide synthase dehydratase BN112_4113 PF02801 Beta-ketoacyl synthase, C-terminal domain BN112_4113 PF08659 KR domain BN112_4113 PF00698 Acyl transferase domain BN112_4114 PF02515 CoA-transferase family III BN112_4115 PF00440 Bacterial regulatory proteins, tetR family BN112_4116 PF00293 NUDIX domain BN112_4116 PF09297 NADH pyrophosphatase zinc ribbon domain BN112_4117 PF00175 Oxidoreductase NAD-binding domain BN112_4117 PF00111 2Fe-2S iron-sulfur cluster binding domain BN112_4118 PF01425 Amidase BN112_4120 PF03466 LysR substrate binding domain BN112_4120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4121 PF13458 Periplasmic binding protein BN112_4123 PF00005 ABC transporter BN112_4125 PF02653 Branched-chain amino acid transport system / permease component BN112_4127 PF00355 Rieske [2Fe-2S] domain BN112_4130 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BN112_4130 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BN112_4131 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4132 PF04391 Protein of unknown function (DUF533) BN112_4135 PF01464 Transglycosylase SLT domain BN112_4135 PF01476 LysM domain BN112_4136 PF16123 Hydroxyacylglutathione hydrolase C-terminus BN112_4136 PF00753 Metallo-beta-lactamase superfamily BN112_4137 PF08241 Methyltransferase domain BN112_4138 PF00075 RNase H BN112_4139 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BN112_4140 PF00873 AcrB/AcrD/AcrF family BN112_4141 PF00929 Exonuclease BN112_4143 PF02667 Short chain fatty acid transporter BN112_4145 PF03616 Sodium/glutamate symporter BN112_4147 PF00535 Glycosyl transferase family 2 BN112_4148 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase BN112_4151 PF12146 Serine aminopeptidase, S33 BN112_4152 PF01810 LysE type translocator BN112_4153 PF00892 EamA-like transporter family BN112_4154 PF00155 Aminotransferase class I and II BN112_4154 PF00392 Bacterial regulatory proteins, gntR family BN112_4156 PF00582 Universal stress protein family BN112_4157 PF14492 Elongation Factor G, domain II BN112_4157 PF03144 Elongation factor Tu domain 2 BN112_4157 PF00009 Elongation factor Tu GTP binding domain BN112_4157 PF03764 Elongation factor G, domain IV BN112_4157 PF00679 Elongation factor G C-terminus BN112_4158 PF02308 MgtC family BN112_4159 PF03741 Integral membrane protein TerC family BN112_4159 PF03471 Transporter associated domain BN112_4160 PF02515 CoA-transferase family III BN112_4161 PF00378 Enoyl-CoA hydratase/isomerase BN112_4162 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4163 PF03466 LysR substrate binding domain BN112_4163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4164 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_4164 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_4164 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_4165 PF02803 Thiolase, C-terminal domain BN112_4165 PF00108 Thiolase, N-terminal domain BN112_4166 PF00501 AMP-binding enzyme BN112_4166 PF13193 AMP-binding enzyme C-terminal domain BN112_4167 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4170 PF01266 FAD dependent oxidoreductase BN112_4171 PF01047 MarR family BN112_4173 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4174 PF00005 ABC transporter BN112_4175 PF01032 FecCD transport family BN112_4177 PF00691 OmpA family BN112_4178 PF04052 TolB amino-terminal domain BN112_4178 PF07676 WD40-like Beta Propeller Repeat BN112_4180 PF02472 Biopolymer transport protein ExbD/TolR BN112_4181 PF01618 MotA/TolQ/ExbB proton channel family BN112_4182 PF03061 Thioesterase superfamily BN112_4183 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BN112_4183 PF03129 Anticodon binding domain BN112_4183 PF04073 Aminoacyl-tRNA editing domain BN112_4184 PF00293 NUDIX domain BN112_4185 PF00072 Response regulator receiver domain BN112_4185 PF00486 Transcriptional regulatory protein, C terminal BN112_4186 PF00512 His Kinase A (phospho-acceptor) domain BN112_4186 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_4189 PF03466 LysR substrate binding domain BN112_4189 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4190 PF02525 Flavodoxin-like fold BN112_4191 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BN112_4191 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BN112_4193 PF01970 Tripartite tricarboxylate transporter TctA family BN112_4198 PF01790 Prolipoprotein diacylglyceryl transferase BN112_4199 PF00920 Dehydratase family BN112_4200 PF00034 Cytochrome c BN112_4201 PF01625 Peptide methionine sulfoxide reductase BN112_4202 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BN112_4203 PF01037 Lrp/AsnC ligand binding domain BN112_4206 PF07687 Peptidase dimerisation domain BN112_4206 PF01546 Peptidase family M20/M25/M40 BN112_4207 PF01979 Amidohydrolase family BN112_4208 PF00005 ABC transporter BN112_4208 PF16326 ABC transporter C-terminal domain BN112_4208 PF12848 ABC transporter BN112_4209 PF02381 MraZ protein, putative antitoxin-like BN112_4210 PF01795 MraW methylase family BN112_4211 PF04999 Cell division protein FtsL BN112_4212 PF03717 Penicillin-binding Protein dimerisation domain BN112_4212 PF00905 Penicillin binding protein transpeptidase domain BN112_4213 PF02875 Mur ligase family, glutamate ligase domain BN112_4213 PF08245 Mur ligase middle domain BN112_4214 PF00953 Glycosyl transferase family 4 BN112_4215 PF08245 Mur ligase middle domain BN112_4215 PF02875 Mur ligase family, glutamate ligase domain BN112_4216 PF01098 Cell cycle protein BN112_4217 PF04101 Glycosyltransferase family 28 C-terminal domain BN112_4217 PF03033 Glycosyltransferase family 28 N-terminal domain BN112_4218 PF02875 Mur ligase family, glutamate ligase domain BN112_4218 PF08245 Mur ligase middle domain BN112_4218 PF01225 Mur ligase family, catalytic domain BN112_4219 PF01820 D-ala D-ala ligase N-terminus BN112_4219 PF07478 D-ala D-ala ligase C-terminus BN112_4220 PF03799 Cell division protein FtsQ BN112_4220 PF08478 POTRA domain, FtsQ-type BN112_4221 PF02491 SHS2 domain inserted in FTSA BN112_4222 PF00091 Tubulin/FtsZ family, GTPase domain BN112_4222 PF12327 FtsZ family, C-terminal domain BN112_4223 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BN112_4225 PF08525 Opacity-associated protein A N-terminal motif BN112_4225 PF01476 LysM domain BN112_4225 PF01551 Peptidase family M23 BN112_4226 PF07517 SecA DEAD-like domain BN112_4226 PF01043 SecA preprotein cross-linking domain BN112_4226 PF07516 SecA Wing and Scaffold domain BN112_4226 PF02810 SEC-C motif BN112_4228 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4230 PF00106 short chain dehydrogenase BN112_4231 PF01266 FAD dependent oxidoreductase BN112_4232 PF01037 Lrp/AsnC ligand binding domain BN112_4234 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP BN112_4235 PF01769 Divalent cation transporter BN112_4235 PF00571 CBS domain BN112_4235 PF03448 MgtE intracellular N domain BN112_4236 PF03061 Thioesterase superfamily BN112_4237 PF03601 Conserved hypothetical protein 698 BN112_4238 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4238 PF03466 LysR substrate binding domain BN112_4239 PF01546 Peptidase family M20/M25/M40 BN112_4239 PF07687 Peptidase dimerisation domain BN112_4240 PF00501 AMP-binding enzyme BN112_4240 PF13193 AMP-binding enzyme C-terminal domain BN112_4241 PF00459 Inositol monophosphatase family BN112_4242 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BN112_4242 PF01266 FAD dependent oxidoreductase BN112_4243 PF01055 Glycosyl hydrolases family 31 BN112_4243 PF13802 Galactose mutarotase-like BN112_4244 PF09383 NIL domain BN112_4244 PF00005 ABC transporter BN112_4245 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4246 PF03180 NLPA lipoprotein BN112_4247 PF00465 Iron-containing alcohol dehydrogenase BN112_4251 PF07729 FCD domain BN112_4251 PF00392 Bacterial regulatory proteins, gntR family BN112_4252 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4255 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4255 PF14785 Maltose transport system permease protein MalF P2 domain BN112_4256 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4257 PF08402 TOBE domain BN112_4257 PF00005 ABC transporter BN112_4258 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_4258 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BN112_4259 PF01547 Bacterial extracellular solute-binding protein BN112_4261 PF00376 MerR family regulatory protein BN112_4261 PF09278 MerR, DNA binding BN112_4262 PF03352 Methyladenine glycosylase BN112_4263 PF05170 AsmA family BN112_4264 PF00440 Bacterial regulatory proteins, tetR family BN112_4271 PF01557 Fumarylacetoacetate (FAA) hydrolase family BN112_4272 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit BN112_4272 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BN112_4274 PF00561 alpha/beta hydrolase fold BN112_4275 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4276 PF03466 LysR substrate binding domain BN112_4276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4278 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BN112_4278 PF00355 Rieske [2Fe-2S] domain BN112_4279 PF01272 Transcription elongation factor, GreA/GreB, C-term BN112_4279 PF03449 Transcription elongation factor, N-terminal BN112_4280 PF04264 YceI-like domain BN112_4281 PF00593 TonB dependent receptor BN112_4281 PF07715 TonB-dependent Receptor Plug Domain BN112_4282 PF16220 Domain of unknown function (DUF4880) BN112_4282 PF04773 FecR protein BN112_4284 PF16653 Saccharopine dehydrogenase C-terminal domain BN112_4284 PF03435 Saccharopine dehydrogenase NADP binding domain BN112_4285 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BN112_4288 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_4289 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4290 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4291 PF00005 ABC transporter BN112_4291 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_4292 PF01425 Amidase BN112_4293 PF00202 Aminotransferase class-III BN112_4296 PF04972 BON domain BN112_4296 PF00691 OmpA family BN112_4297 PF01329 Pterin 4 alpha carbinolamine dehydratase BN112_4299 PF00483 Nucleotidyl transferase BN112_4300 PF01636 Phosphotransferase enzyme family BN112_4301 PF04453 LPS transport system D BN112_4302 PF09312 SurA N-terminal domain BN112_4302 PF00639 PPIC-type PPIASE domain BN112_4303 PF00398 Ribosomal RNA adenine dimethylase BN112_4304 PF02595 Glycerate kinase family BN112_4305 PF02887 Pyruvate kinase, alpha/beta domain BN112_4305 PF00224 Pyruvate kinase, barrel domain BN112_4306 PF07670 Nucleoside recognition BN112_4307 PF09317 Domain of unknown function (DUF1974) BN112_4307 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BN112_4307 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_4307 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_4308 PF01327 Polypeptide deformylase BN112_4309 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BN112_4311 PF01553 Acyltransferase BN112_4313 PF02092 Glycyl-tRNA synthetase beta subunit BN112_4313 PF05746 DALR anticodon binding domain BN112_4314 PF02091 Glycyl-tRNA synthetase alpha subunit BN112_4317 PF00694 Aconitase C-terminal domain BN112_4318 PF00330 Aconitase family (aconitate hydratase) BN112_4319 PF07702 UTRA domain BN112_4319 PF00392 Bacterial regulatory proteins, gntR family BN112_4320 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4321 PF00378 Enoyl-CoA hydratase/isomerase BN112_4324 PF02515 CoA-transferase family III BN112_4325 PF03328 HpcH/HpaI aldolase/citrate lyase family BN112_4326 PF00294 pfkB family carbohydrate kinase BN112_4327 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4329 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BN112_4329 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BN112_4331 PF00753 Metallo-beta-lactamase superfamily BN112_4332 PF02627 Carboxymuconolactone decarboxylase family BN112_4333 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BN112_4333 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BN112_4334 PF00392 Bacterial regulatory proteins, gntR family BN112_4334 PF07702 UTRA domain BN112_4335 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_4336 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BN112_4338 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4339 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BN112_4340 PF12627 Probable RNA and SrmB- binding site of polymerase A BN112_4340 PF01743 Poly A polymerase head domain BN112_4340 PF12626 Polymerase A arginine-rich C-terminus BN112_4342 PF00308 Bacterial dnaA protein BN112_4343 PF00586 AIR synthase related protein, N-terminal domain BN112_4343 PF02769 AIR synthase related protein, C-terminal domain BN112_4345 PF08676 MutL C terminal dimerisation domain BN112_4345 PF01119 DNA mismatch repair protein, C-terminal domain BN112_4346 PF09335 SNARE associated Golgi protein BN112_4347 PF11741 AMIN domain BN112_4347 PF01520 N-acetylmuramoyl-L-alanine amidase BN112_4348 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BN112_4349 PF10415 Fumarase C C-terminus BN112_4349 PF00206 Lyase BN112_4351 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4352 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4352 PF03466 LysR substrate binding domain BN112_4354 PF02515 CoA-transferase family III BN112_4355 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4356 PF02770 Acyl-CoA dehydrogenase, middle domain BN112_4356 PF18158 Adaptive response protein AidB N-terminal domain BN112_4356 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BN112_4357 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4357 PF03466 LysR substrate binding domain BN112_4358 PF00551 Formyl transferase BN112_4360 PF01613 Flavin reductase like domain BN112_4361 PF01243 Pyridoxamine 5'-phosphate oxidase BN112_4361 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BN112_4363 PF07690 Major Facilitator Superfamily BN112_4364 PF00899 ThiF family BN112_4365 PF00392 Bacterial regulatory proteins, gntR family BN112_4365 PF07702 UTRA domain BN112_4366 PF00501 AMP-binding enzyme BN112_4366 PF13193 AMP-binding enzyme C-terminal domain BN112_4367 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4369 PF01063 Amino-transferase class IV BN112_4370 PF04715 Anthranilate synthase component I, N terminal region BN112_4370 PF00425 chorismate binding enzyme BN112_4371 PF00005 ABC transporter BN112_4371 PF17760 UvrA interaction domain BN112_4371 PF17755 UvrA DNA-binding domain BN112_4373 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4373 PF03466 LysR substrate binding domain BN112_4374 PF00535 Glycosyl transferase family 2 BN112_4375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_4376 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4377 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4377 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_4378 PF00005 ABC transporter BN112_4378 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_4379 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_4379 PF00005 ABC transporter BN112_4381 PF01425 Amidase BN112_4384 PF12848 ABC transporter BN112_4384 PF00005 ABC transporter BN112_4387 PF03776 Septum formation topological specificity factor MinE BN112_4388 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BN112_4389 PF03775 Septum formation inhibitor MinC, C-terminal domain BN112_4389 PF05209 Septum formation inhibitor MinC, N-terminal domain BN112_4390 PF00749 tRNA synthetases class I (E and Q), catalytic domain BN112_4390 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BN112_4391 PF01654 Cytochrome bd terminal oxidase subunit I BN112_4393 PF13493 Domain of unknown function (DUF4118) BN112_4393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_4393 PF02702 Osmosensitive K+ channel His kinase sensor domain BN112_4394 PF00072 Response regulator receiver domain BN112_4394 PF00486 Transcriptional regulatory protein, C terminal BN112_4396 PF00271 Helicase conserved C-terminal domain BN112_4396 PF00570 HRDC domain BN112_4396 PF09382 RQC domain BN112_4396 PF16124 RecQ zinc-binding BN112_4396 PF00270 DEAD/DEAH box helicase BN112_4397 PF17864 RuvB AAA lid domain BN112_4397 PF05496 Holliday junction DNA helicase RuvB P-loop domain BN112_4397 PF05491 RuvB C-terminal winged helix domain BN112_4398 PF00291 Pyridoxal-phosphate dependent enzyme BN112_4399 PF01370 NAD dependent epimerase/dehydratase family BN112_4400 PF07499 RuvA, C-terminal domain BN112_4400 PF01330 RuvA N terminal domain BN112_4401 PF02075 Crossover junction endodeoxyribonuclease RuvC BN112_4402 PF01808 AICARFT/IMPCHase bienzyme BN112_4402 PF02142 MGS-like domain BN112_4403 PF02954 Bacterial regulatory protein, Fis family BN112_4404 PF01207 Dihydrouridine synthase (Dus) BN112_4405 PF01494 FAD binding domain BN112_4407 PF05195 Aminopeptidase P, N-terminal domain BN112_4407 PF00557 Metallopeptidase family M24 BN112_4410 PF13609 Gram-negative porin BN112_4412 PF00483 Nucleotidyl transferase BN112_4413 PF01435 Peptidase family M48 BN112_4413 PF13181 Tetratricopeptide repeat BN112_4414 PF00561 alpha/beta hydrolase fold BN112_4417 PF01063 Amino-transferase class IV BN112_4420 PF00270 DEAD/DEAH box helicase BN112_4420 PF00271 Helicase conserved C-terminal domain BN112_4423 PF18146 Damage-inducible protein CinA KH domain BN112_4423 PF02464 Competence-damaged protein BN112_4423 PF00994 Probable molybdopterin binding domain BN112_4424 PF01614 Bacterial transcriptional regulator BN112_4424 PF09339 IclR helix-turn-helix domain BN112_4425 PF05785 Rho-activating domain of cytotoxic necrotizing factor BN112_4425 PF18807 Tripartite Tc toxins repeat BN112_4426 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4428 PF01180 Dihydroorotate dehydrogenase BN112_4429 PF04377 Arginine-tRNA-protein transferase, C terminus BN112_4429 PF04376 Arginine-tRNA-protein transferase, N terminus BN112_4430 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BN112_4432 PF03466 LysR substrate binding domain BN112_4432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4436 PF01810 LysE type translocator BN112_4438 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4441 PF01266 FAD dependent oxidoreductase BN112_4443 PF01925 Sulfite exporter TauE/SafE BN112_4444 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BN112_4445 PF03328 HpcH/HpaI aldolase/citrate lyase family BN112_4446 PF07729 FCD domain BN112_4446 PF00392 Bacterial regulatory proteins, gntR family BN112_4449 PF03480 Bacterial extracellular solute-binding protein, family 7 BN112_4454 PF00378 Enoyl-CoA hydratase/isomerase BN112_4456 PF01575 MaoC like domain BN112_4457 PF02515 CoA-transferase family III BN112_4458 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4459 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BN112_4459 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BN112_4460 PF02615 Malate/L-lactate dehydrogenase BN112_4461 PF03466 LysR substrate binding domain BN112_4461 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4463 PF01266 FAD dependent oxidoreductase BN112_4464 PF04267 Sarcosine oxidase, delta subunit family BN112_4465 PF01571 Aminomethyltransferase folate-binding domain BN112_4465 PF17806 Sarcosine oxidase A3 domain BN112_4465 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_4465 PF08669 Glycine cleavage T-protein C-terminal barrel domain BN112_4467 PF00551 Formyl transferase BN112_4468 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4470 PF00561 alpha/beta hydrolase fold BN112_4471 PF01565 FAD binding domain BN112_4471 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BN112_4472 PF01113 Dihydrodipicolinate reductase, N-terminus BN112_4472 PF05173 Dihydrodipicolinate reductase, C-terminus BN112_4473 PF04355 SmpA / OmlA family BN112_4474 PF01475 Ferric uptake regulator family BN112_4475 PF02463 RecF/RecN/SMC N terminal domain BN112_4476 PF01513 ATP-NAD kinase BN112_4477 PF01628 HrcA protein C terminal domain BN112_4477 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BN112_4478 PF00762 Ferrochelatase BN112_4480 PF01025 GrpE BN112_4482 PF00012 Hsp70 protein BN112_4483 PF00226 DnaJ domain BN112_4483 PF00684 DnaJ central domain BN112_4483 PF01556 DnaJ C terminal domain BN112_4484 PF05193 Peptidase M16 inactive domain BN112_4484 PF00675 Insulinase (Peptidase family M16) BN112_4488 PF01434 Peptidase family M41 BN112_4488 PF17862 AAA+ lid domain BN112_4488 PF00004 ATPase family associated with various cellular activities (AAA) BN112_4489 PF00034 Cytochrome c BN112_4492 PF00180 Isocitrate/isopropylmalate dehydrogenase BN112_4495 PF00072 Response regulator receiver domain BN112_4495 PF00486 Transcriptional regulatory protein, C terminal BN112_4496 PF02702 Osmosensitive K+ channel His kinase sensor domain BN112_4496 PF00512 His Kinase A (phospho-acceptor) domain BN112_4496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_4496 PF13493 Domain of unknown function (DUF4118) BN112_4496 PF13492 GAF domain BN112_4497 PF02669 K+-transporting ATPase, c chain BN112_4499 PF03814 Potassium-transporting ATPase A subunit BN112_4501 PF00474 Sodium:solute symporter family BN112_4502 PF00893 Small Multidrug Resistance protein BN112_4503 PF01713 Smr domain BN112_4503 PF00488 MutS domain V BN112_4504 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_4505 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BN112_4505 PF17854 FtsK alpha domain BN112_4505 PF09397 Ftsk gamma domain BN112_4505 PF01580 FtsK/SpoIIIE family BN112_4506 PF03548 Outer membrane lipoprotein carrier protein LolA BN112_4507 PF16193 AAA C-terminal domain BN112_4507 PF12002 MgsA AAA+ ATPase C terminal BN112_4507 PF00004 ATPase family associated with various cellular activities (AAA) BN112_4508 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BN112_4508 PF02403 Seryl-tRNA synthetase N-terminal domain BN112_4513 PF17151 Periplasmic sensor domain BN112_4513 PF00990 Diguanylate cyclase, GGDEF domain BN112_4515 PF07715 TonB-dependent Receptor Plug Domain BN112_4515 PF00593 TonB dependent receptor BN112_4515 PF07660 Secretin and TonB N terminus short domain BN112_4516 PF07690 Major Facilitator Superfamily BN112_4520 PF06276 Ferric iron reductase FhuF-like transporter BN112_4520 PF04183 IucA / IucC family BN112_4522 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BN112_4523 PF00999 Sodium/hydrogen exchanger family BN112_4523 PF02254 TrkA-N domain BN112_4524 PF00106 short chain dehydrogenase BN112_4525 PF03883 Peroxide stress protein YaaA BN112_4527 PF12805 FUSC-like inner membrane protein yccS BN112_4528 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_4528 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_4528 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_4529 PF10369 Small subunit of acetolactate synthase BN112_4530 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BN112_4530 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BN112_4531 PF01066 CDP-alcohol phosphatidyltransferase BN112_4533 PF00312 Ribosomal protein S15 BN112_4534 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BN112_4534 PF00013 KH domain BN112_4534 PF00575 S1 RNA binding domain BN112_4534 PF03725 3' exoribonuclease family, domain 2 BN112_4534 PF01138 3' exoribonuclease family, domain 1 BN112_4536 PF00291 Pyridoxal-phosphate dependent enzyme BN112_4536 PF13291 ACT domain BN112_4538 PF00109 Beta-ketoacyl synthase, N-terminal domain BN112_4538 PF00550 Phosphopantetheine attachment site BN112_4538 PF08240 Alcohol dehydrogenase GroES-like domain BN112_4538 PF14765 Polyketide synthase dehydratase BN112_4538 PF08990 Erythronolide synthase docking BN112_4538 PF16197 Ketoacyl-synthetase C-terminal extension BN112_4538 PF08659 KR domain BN112_4538 PF00698 Acyl transferase domain BN112_4538 PF02801 Beta-ketoacyl synthase, C-terminal domain BN112_4539 PF00121 Triosephosphate isomerase BN112_4540 PF03840 Preprotein translocase SecG subunit BN112_4541 PF02028 BCCT, betaine/carnitine/choline family transporter BN112_4543 PF05034 Methylaspartate ammonia-lyase N-terminus BN112_4543 PF07476 Methylaspartate ammonia-lyase C-terminus BN112_4544 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4546 PF00206 Lyase BN112_4546 PF14698 Argininosuccinate lyase C-terminal BN112_4547 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4549 PF03466 LysR substrate binding domain BN112_4549 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4550 PF01053 Cys/Met metabolism PLP-dependent enzyme BN112_4551 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BN112_4554 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4555 PF01266 FAD dependent oxidoreductase BN112_4557 PF01968 Hydantoinase/oxoprolinase BN112_4557 PF05378 Hydantoinase/oxoprolinase N-terminal region BN112_4559 PF00127 Copper binding proteins, plastocyanin/azurin family BN112_4561 PF02321 Outer membrane efflux protein BN112_4562 PF00873 AcrB/AcrD/AcrF family BN112_4563 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BN112_4564 PF01638 HxlR-like helix-turn-helix BN112_4565 PF02028 BCCT, betaine/carnitine/choline family transporter BN112_4566 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4566 PF03466 LysR substrate binding domain BN112_4567 PF00781 Diacylglycerol kinase catalytic domain BN112_4569 PF01569 PAP2 superfamily BN112_4573 PF13609 Gram-negative porin BN112_4574 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BN112_4575 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BN112_4576 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BN112_4577 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BN112_4579 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BN112_4579 PF10531 SLBB domain BN112_4579 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BN112_4580 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BN112_4580 PF00384 Molybdopterin oxidoreductase BN112_4580 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BN112_4581 PF00146 NADH dehydrogenase BN112_4582 PF12838 4Fe-4S dicluster domain BN112_4583 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BN112_4584 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BN112_4585 PF00361 Proton-conducting membrane transporter BN112_4585 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BN112_4586 PF00361 Proton-conducting membrane transporter BN112_4586 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BN112_4587 PF00361 Proton-conducting membrane transporter BN112_4589 PF07715 TonB-dependent Receptor Plug Domain BN112_4589 PF00593 TonB dependent receptor BN112_4590 PF07715 TonB-dependent Receptor Plug Domain BN112_4590 PF00593 TonB dependent receptor BN112_4593 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_4593 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_4593 PF00205 Thiamine pyrophosphate enzyme, central domain BN112_4594 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4595 PF03466 LysR substrate binding domain BN112_4595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4597 PF17757 UvrB interaction domain BN112_4597 PF03461 TRCF domain BN112_4597 PF00271 Helicase conserved C-terminal domain BN112_4597 PF00270 DEAD/DEAH box helicase BN112_4597 PF02559 CarD-like/TRCF domain BN112_4598 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BN112_4599 PF02542 YgbB family BN112_4600 PF07690 Major Facilitator Superfamily BN112_4602 PF02627 Carboxymuconolactone decarboxylase family BN112_4603 PF00578 AhpC/TSA family BN112_4604 PF00672 HAMP domain BN112_4604 PF00512 His Kinase A (phospho-acceptor) domain BN112_4604 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BN112_4605 PF00486 Transcriptional regulatory protein, C terminal BN112_4605 PF00072 Response regulator receiver domain BN112_4606 PF00814 Glycoprotease family BN112_4607 PF03167 Uracil DNA glycosylase superfamily BN112_4608 PF07690 Major Facilitator Superfamily BN112_4609 PF06470 SMC proteins Flexible Hinge Domain BN112_4609 PF02463 RecF/RecN/SMC N terminal domain BN112_4611 PF12826 Helix-hairpin-helix motif BN112_4611 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BN112_4611 PF01653 NAD-dependent DNA ligase adenylation domain BN112_4611 PF03120 NAD-dependent DNA ligase OB-fold domain BN112_4611 PF00533 BRCA1 C Terminus (BRCT) domain BN112_4613 PF01722 BolA-like protein BN112_4614 PF04279 Intracellular septation protein A BN112_4615 PF01641 SelR domain BN112_4616 PF00005 ABC transporter BN112_4617 PF02361 Cobalt transport protein BN112_4618 PF02632 BioY family BN112_4621 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_4621 PF00005 ABC transporter BN112_4622 PF00005 ABC transporter BN112_4623 PF01063 Amino-transferase class IV BN112_4626 PF02653 Branched-chain amino acid transport system / permease component BN112_4628 PF00005 ABC transporter BN112_4629 PF12399 Branched-chain amino acid ATP-binding cassette transporter BN112_4629 PF00005 ABC transporter BN112_4630 PF00633 Helix-hairpin-helix motif BN112_4630 PF00730 HhH-GPD superfamily base excision DNA repair protein BN112_4630 PF10576 Iron-sulfur binding domain of endonuclease III BN112_4631 PF04060 Putative Fe-S cluster BN112_4633 PF00175 Oxidoreductase NAD-binding domain BN112_4633 PF00970 Oxidoreductase FAD-binding domain BN112_4634 PF11953 Domain of unknown function (DUF3470) BN112_4634 PF00037 4Fe-4S binding domain BN112_4635 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BN112_4635 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BN112_4636 PF01042 Endoribonuclease L-PSP BN112_4638 PF06167 Glucose-regulated metallo-peptidase M90 BN112_4639 PF02824 TGS domain BN112_4639 PF04607 Region found in RelA / SpoT proteins BN112_4639 PF13291 ACT domain BN112_4640 PF07687 Peptidase dimerisation domain BN112_4640 PF01546 Peptidase family M20/M25/M40 BN112_4641 PF00291 Pyridoxal-phosphate dependent enzyme BN112_4642 PF00290 Tryptophan synthase alpha chain BN112_4643 PF01039 Carboxyl transferase domain BN112_4643 PF17848 Acetyl-coA carboxylase zinc finger domain BN112_4644 PF09411 Lipid A 3-O-deacylase (PagL) BN112_4646 PF00575 S1 RNA binding domain BN112_4646 PF10150 Ribonuclease E/G family BN112_4646 PF12111 Polyribonucleotide phosphorylase C terminal BN112_4647 PF01479 S4 domain BN112_4647 PF00849 RNA pseudouridylate synthase BN112_4648 PF13419 Haloacid dehalogenase-like hydrolase BN112_4649 PF00174 Oxidoreductase molybdopterin binding domain BN112_4650 PF01794 Ferric reductase like transmembrane component BN112_4651 PF01510 N-acetylmuramoyl-L-alanine amidase BN112_4652 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BN112_4653 PF02545 Maf-like protein BN112_4654 PF02620 Large ribosomal RNA subunit accumulation protein YceD BN112_4655 PF01783 Ribosomal L32p protein family BN112_4656 PF02504 Fatty acid synthesis protein BN112_4657 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BN112_4657 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BN112_4658 PF00698 Acyl transferase domain BN112_4660 PF00550 Phosphopantetheine attachment site BN112_4661 PF00109 Beta-ketoacyl synthase, N-terminal domain BN112_4661 PF02801 Beta-ketoacyl synthase, C-terminal domain BN112_4663 PF04542 Sigma-70 region 2 BN112_4663 PF08281 Sigma-70, region 4 BN112_4666 PF13180 PDZ domain BN112_4666 PF17820 PDZ domain BN112_4667 PF00679 Elongation factor G C-terminus BN112_4667 PF00009 Elongation factor Tu GTP binding domain BN112_4667 PF03144 Elongation factor Tu domain 2 BN112_4667 PF06421 GTP-binding protein LepA C-terminus BN112_4668 PF10502 Signal peptidase, peptidase S26 BN112_4669 PF00035 Double-stranded RNA binding motif BN112_4669 PF14622 Ribonuclease-III-like BN112_4670 PF01926 50S ribosome-binding GTPase BN112_4670 PF07650 KH domain BN112_4671 PF11967 Recombination protein O N terminal BN112_4671 PF02565 Recombination protein O C terminal BN112_4673 PF00291 Pyridoxal-phosphate dependent enzyme BN112_4675 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4676 PF01027 Inhibitor of apoptosis-promoting Bax1 BN112_4678 PF04364 DNA polymerase III chi subunit, HolC BN112_4679 PF00883 Cytosol aminopeptidase family, catalytic domain BN112_4679 PF02789 Cytosol aminopeptidase family, N-terminal domain BN112_4681 PF03466 LysR substrate binding domain BN112_4681 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4683 PF00171 Aldehyde dehydrogenase family BN112_4684 PF03466 LysR substrate binding domain BN112_4684 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4686 PF00877 NlpC/P60 family BN112_4687 PF16177 Acetyl-coenzyme A synthetase N-terminus BN112_4687 PF00501 AMP-binding enzyme BN112_4687 PF13193 AMP-binding enzyme C-terminal domain BN112_4688 PF03928 Haem-degrading BN112_4690 PF00501 AMP-binding enzyme BN112_4690 PF13193 AMP-binding enzyme C-terminal domain BN112_4690 PF16177 Acetyl-coenzyme A synthetase N-terminus BN112_4691 PF00892 EamA-like transporter family BN112_4692 PF01212 Beta-eliminating lyase BN112_4698 PF01144 Coenzyme A transferase BN112_4699 PF01144 Coenzyme A transferase BN112_4701 PF01112 Asparaginase BN112_4702 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BN112_4702 PF00005 ABC transporter BN112_4703 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BN112_4704 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4705 PF12911 N-terminal TM domain of oligopeptide transport permease C BN112_4705 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4706 PF03576 Peptidase family S58 BN112_4708 PF01321 Creatinase/Prolidase N-terminal domain BN112_4708 PF00557 Metallopeptidase family M24 BN112_4709 PF00117 Glutamine amidotransferase class-I BN112_4709 PF06418 CTP synthase N-terminus BN112_4710 PF00793 DAHP synthetase I family BN112_4712 PF00113 Enolase, C-terminal TIM barrel domain BN112_4712 PF03952 Enolase, N-terminal domain BN112_4713 PF04977 Septum formation initiator BN112_4714 PF00211 Adenylate and Guanylate cyclase catalytic domain BN112_4719 PF01430 Hsp33 protein BN112_4721 PF13193 AMP-binding enzyme C-terminal domain BN112_4721 PF00501 AMP-binding enzyme BN112_4721 PF16177 Acetyl-coenzyme A synthetase N-terminus BN112_4725 PF01170 Putative RNA methylase family UPF0020 BN112_4725 PF02926 THUMP domain BN112_4726 PF03653 Uncharacterised protein family (UPF0093) BN112_4727 PF03972 MmgE/PrpD family BN112_4728 PF04303 PrpF protein BN112_4729 PF00330 Aconitase family (aconitate hydratase) BN112_4729 PF00694 Aconitase C-terminal domain BN112_4730 PF00285 Citrate synthase, C-terminal domain BN112_4732 PF00056 lactate/malate dehydrogenase, NAD binding domain BN112_4732 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BN112_4733 PF00392 Bacterial regulatory proteins, gntR family BN112_4733 PF07702 UTRA domain BN112_4734 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BN112_4735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BN112_4736 PF02910 Fumarate reductase flavoprotein C-term BN112_4736 PF00890 FAD binding domain BN112_4737 PF13085 2Fe-2S iron-sulfur cluster binding domain BN112_4738 PF03937 Flavinator of succinate dehydrogenase BN112_4739 PF00285 Citrate synthase, C-terminal domain BN112_4742 PF16970 Type-1 fimbrial protein, A BN112_4743 PF03949 Malic enzyme, NAD binding domain BN112_4743 PF01515 Phosphate acetyl/butaryl transferase BN112_4743 PF00390 Malic enzyme, N-terminal domain BN112_4744 PF17831 Pyruvate dehydrogenase E1 component middle domain BN112_4744 PF00456 Transketolase, thiamine diphosphate binding domain BN112_4746 PF03169 OPT oligopeptide transporter protein BN112_4747 PF16078 2-oxoglutarate dehydrogenase N-terminus BN112_4747 PF02779 Transketolase, pyrimidine binding domain BN112_4747 PF16870 2-oxoglutarate dehydrogenase C-terminal BN112_4747 PF00676 Dehydrogenase E1 component BN112_4748 PF00364 Biotin-requiring enzyme BN112_4748 PF02817 e3 binding domain BN112_4748 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BN112_4749 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BN112_4749 PF07992 Pyridine nucleotide-disulphide oxidoreductase BN112_4750 PF03969 AFG1-like ATPase BN112_4752 PF03466 LysR substrate binding domain BN112_4752 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4753 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4755 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BN112_4756 PF04542 Sigma-70 region 2 BN112_4756 PF08281 Sigma-70, region 4 BN112_4757 PF16220 Domain of unknown function (DUF4880) BN112_4757 PF04773 FecR protein BN112_4758 PF00593 TonB dependent receptor BN112_4758 PF07715 TonB-dependent Receptor Plug Domain BN112_4762 PF00579 tRNA synthetases class I (W and Y) BN112_4763 PF00575 S1 RNA binding domain BN112_4763 PF17674 HHH domain BN112_4763 PF16921 Tex protein YqgF-like domain BN112_4763 PF09371 Tex-like protein N-terminal domain BN112_4764 PF04851 Type III restriction enzyme, res subunit BN112_4764 PF13307 Helicase C-terminal domain BN112_4765 PF13525 Outer membrane lipoprotein BN112_4766 PF01479 S4 domain BN112_4766 PF00849 RNA pseudouridylate synthase BN112_4767 PF02578 Multi-copper polyphenol oxidoreductase laccase BN112_4768 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus BN112_4769 PF00106 short chain dehydrogenase BN112_4770 PF07879 PHB/PHA accumulation regulator DNA-binding domain BN112_4770 PF05233 PHB accumulation regulatory domain BN112_4771 PF10634 Fe2+ transport protein BN112_4773 PF03239 Iron permease FTR1 family BN112_4775 PF02567 Phenazine biosynthesis-like protein BN112_4776 PF04972 BON domain BN112_4778 PF05532 CsbD-like BN112_4779 PF02875 Mur ligase family, glutamate ligase domain BN112_4779 PF08245 Mur ligase middle domain BN112_4779 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BN112_4780 PF08443 RimK-like ATP-grasp domain BN112_4780 PF08245 Mur ligase middle domain BN112_4780 PF02875 Mur ligase family, glutamate ligase domain BN112_4781 PF00005 ABC transporter BN112_4781 PF00664 ABC transporter transmembrane region BN112_4784 PF04305 Protein of unknown function (DUF455) BN112_4785 PF13406 Transglycosylase SLT domain BN112_4787 PF00582 Universal stress protein family BN112_4788 PF07694 5TMR of 5TMR-LYT BN112_4788 PF00990 Diguanylate cyclase, GGDEF domain BN112_4789 PF07690 Major Facilitator Superfamily BN112_4790 PF00881 Nitroreductase family BN112_4791 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4793 PF05378 Hydantoinase/oxoprolinase N-terminal region BN112_4793 PF01968 Hydantoinase/oxoprolinase BN112_4794 PF00155 Aminotransferase class I and II BN112_4795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BN112_4795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BN112_4797 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4797 PF03466 LysR substrate binding domain BN112_4798 PF09084 NMT1/THI5 like BN112_4800 PF00528 Binding-protein-dependent transport system inner membrane component BN112_4801 PF00005 ABC transporter BN112_4802 PF03972 MmgE/PrpD family BN112_4803 PF00171 Aldehyde dehydrogenase family BN112_4804 PF14537 Cytochrome c3 BN112_4804 PF00890 FAD binding domain BN112_4806 PF04303 PrpF protein BN112_4809 PF01557 Fumarylacetoacetate (FAA) hydrolase family BN112_4811 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4812 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4812 PF03466 LysR substrate binding domain BN112_4814 PF00501 AMP-binding enzyme BN112_4814 PF13193 AMP-binding enzyme C-terminal domain BN112_4819 PF03401 Tripartite tricarboxylate transporter family receptor BN112_4820 PF03466 LysR substrate binding domain BN112_4820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BN112_4821 PF00589 Phage integrase family BN112_4821 PF12167 Arm DNA-binding domain BN112_4827 PF03837 RecT family BN112_4835 PF03837 RecT family BN112_4844 PF03837 RecT family