locus-tag	class	description
FYA99_RS00010	COG0357	Ribosomal RNA small subunit methyltransferase G
FYA99_RS00015	COG1192	Involved in chromosome partitioning
FYA99_RS00025	COG1475	DNA binding
FYA99_RS00030	COG0252	asparaginase activity
FYA99_RS00050	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FYA99_RS00060	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FYA99_RS00075	COG0081	regulation of translation
FYA99_RS00080	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
FYA99_RS00085	COG0222	ribosome binding
FYA99_RS00095	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
FYA99_RS00130	COG1230	cation diffusion facilitator family transporter
FYA99_RS00140	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
FYA99_RS00145	COG0049	tRNA binding
FYA99_RS00155	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FYA99_RS00165	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
FYA99_RS00175	COG0089	rRNA binding
FYA99_RS00180	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
FYA99_RS00190	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
FYA99_RS00195	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
FYA99_RS00200	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
FYA99_RS00205	COG0255	Belongs to the universal ribosomal protein uL29 family
FYA99_RS00210	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
FYA99_RS00230	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
FYA99_RS00235	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
FYA99_RS00240	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
FYA99_RS00245	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
FYA99_RS00250	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
FYA99_RS00260	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
FYA99_RS00265	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
FYA99_RS00270	COG1841	ribosomal large subunit assembly
FYA99_RS00280	COG0201	protein transport
FYA99_RS00285	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FYA99_RS00290	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FYA99_RS00295	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
FYA99_RS00300	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
FYA99_RS00305	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
FYA99_RS00310	COG0202	RNA polymerase activity
FYA99_RS00315	COG0203	ribosomal protein L17
FYA99_RS00320	COG0537	adenosine 5'-monophosphoramidase activity
FYA99_RS00325	COG1324	tolerance protein
FYA99_RS00330	COG4232	protein-disulfide reductase activity
FYA99_RS00345	COG0218	Necessary for normal cell division and for the maintenance of normal septation
FYA99_RS00355	COG1333	cytochrome c biogenesis protein
FYA99_RS00360	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYA99_RS00385	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
FYA99_RS00390	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
FYA99_RS00410	COG2814	Major facilitator Superfamily
FYA99_RS00455	COG0402	S-adenosylhomocysteine deaminase activity
FYA99_RS00465	COG0438	transferase activity, transferring glycosyl groups
FYA99_RS00485	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS00515	COG2186	Transcriptional regulator
FYA99_RS00535	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYA99_RS00540	COG1956	GAF domain-containing protein
FYA99_RS00545	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYA99_RS00575	COG0531	amino acid
FYA99_RS00605	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
FYA99_RS00610	COG3568	Endonuclease Exonuclease Phosphatase
FYA99_RS00615	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYA99_RS00635	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYA99_RS00645	COG0367	asparagine synthase
FYA99_RS00665	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FYA99_RS00670	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FYA99_RS00710	COG0367	asparagine synthase
FYA99_RS00715	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
FYA99_RS00740	COG0367	asparagine synthase
FYA99_RS00750	COG0438	transferase activity, transferring glycosyl groups
FYA99_RS00770	COG0438	transferase activity, transferring glycosyl groups
FYA99_RS00775	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FYA99_RS00780	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FYA99_RS00810	COG0859	PFAM glycosyl transferase family 9
FYA99_RS00840	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FYA99_RS00845	COG1127	ABC transporter
FYA99_RS00865	COG1686	Belongs to the peptidase S11 family
FYA99_RS00905	COG2096	Adenosyltransferase
FYA99_RS00930	COG0523	cobalamin synthesis protein
FYA99_RS00935	COG0735	belongs to the Fur family
FYA99_RS00945	COG1121	(ABC) transporter
FYA99_RS00955	COG0803	Belongs to the bacterial solute-binding protein 9 family
FYA99_RS00965	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
FYA99_RS00975	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
FYA99_RS00985	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
FYA99_RS00990	COG1560	Kdo2-lipid A biosynthetic process
FYA99_RS01000	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
FYA99_RS01020	COG1950	PFAM Membrane protein of
FYA99_RS01030	COG0583	DNA-binding transcription factor activity
FYA99_RS01040	COG0477	Major facilitator Superfamily
FYA99_RS01065	COG0513	Belongs to the DEAD box helicase family
FYA99_RS01075	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYA99_RS01080	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FYA99_RS01095	COG0735	belongs to the Fur family
FYA99_RS01115	COG0438	transferase activity, transferring glycosyl groups
FYA99_RS01140	COG0640	Transcriptional regulator
FYA99_RS01200	COG0583	DNA-binding transcription factor activity
FYA99_RS01215	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FYA99_RS01220	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYA99_RS01225	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA99_RS01240	COG0758	DNA mediated transformation
FYA99_RS01245	COG1522	sequence-specific DNA binding
FYA99_RS01255	COG0242	peptide deformylase activity
FYA99_RS01270	COG0546	phosphoglycolate phosphatase activity
FYA99_RS01290	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FYA99_RS01295	COG1942	4-Oxalocrotonate Tautomerase
FYA99_RS01300	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYA99_RS01335	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYA99_RS01335	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FYA99_RS01345	COG5000	phosphorelay sensor kinase activity
FYA99_RS01350	COG2204	response regulator
FYA99_RS01375	COG2068	MobA-Related Protein
FYA99_RS01390	COG0596	Alpha beta hydrolase
FYA99_RS01395	COG2309	aminopeptidase activity
FYA99_RS01400	COG1335	isochorismatase
FYA99_RS01430	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYA99_RS01455	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYA99_RS01460	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS01480	COG2226	methyltransferase
FYA99_RS01495	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS01505	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
FYA99_RS01510	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYA99_RS01515	COG1054	Belongs to the UPF0176 family
FYA99_RS01525	COG4942	peptidase
FYA99_RS01530	COG0793	Belongs to the peptidase S41A family
FYA99_RS01535	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FYA99_RS01555	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYA99_RS01590	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
FYA99_RS01595	COG0211	Belongs to the bacterial ribosomal protein bL27 family
FYA99_RS01600	COG0261	This protein binds to 23S rRNA in the presence of protein L20
FYA99_RS01610	COG0142	geranyltranstransferase activity
FYA99_RS01620	COG0583	DNA-binding transcription factor activity
FYA99_RS01630	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
FYA99_RS01635	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYA99_RS01650	COG2994	toxin metabolic process
FYA99_RS01660	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
FYA99_RS01665	COG2274	protein secretion by the type I secretion system
FYA99_RS01670	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA99_RS01675	COG1538	Outer membrane efflux protein
FYA99_RS01690	COG0765	amino acid transport
FYA99_RS01695	COG0765	amino acid transport
FYA99_RS01700	COG1126	abc transporter atp-binding protein
FYA99_RS01720	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS01730	COG1802	Transcriptional regulator
FYA99_RS01745	COG1802	Transcriptional regulator
FYA99_RS01755	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS01765	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS01795	COG0583	DNA-binding transcription factor activity
FYA99_RS01800	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS01805	COG2301	Belongs to the HpcH HpaI aldolase family
FYA99_RS01810	COG2188	Transcriptional regulator
FYA99_RS01855	COG0583	DNA-binding transcription factor activity
FYA99_RS01860	COG1024	Enoyl-CoA hydratase
FYA99_RS01895	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS01910	COG1902	pentaerythritol trinitrate reductase activity
FYA99_RS01935	COG0745	RESPONSE REGULATOR receiver
FYA99_RS01975	COG2890	protein-(glutamine-N5) methyltransferase activity
FYA99_RS01980	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
FYA99_RS01990	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS02060	COG4211	Belongs to the binding-protein-dependent transport system permease family
FYA99_RS02070	COG0683	leucine binding
FYA99_RS02075	COG0154	amidase activity
FYA99_RS02080	COG0288	reversible hydration of carbon dioxide
FYA99_RS02100	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYA99_RS02115	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FYA99_RS02125	COG1414	Transcriptional regulator
FYA99_RS02130	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS02135	COG2031	fatty acid transporter
FYA99_RS02140	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA99_RS02175	COG2808	Putative FMN-binding domain
FYA99_RS02180	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYA99_RS02185	COG0747	negative chemotaxis
FYA99_RS02190	COG0657	acetylesterase activity
FYA99_RS02200	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYA99_RS02205	COG2207	Transcriptional regulator
FYA99_RS02230	COG1538	Outer membrane efflux protein
FYA99_RS02245	COG0583	DNA-binding transcription factor activity
FYA99_RS02250	COG0628	permease
FYA99_RS02260	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FYA99_RS02265	COG0251	oxidation-reduction process
FYA99_RS02275	COG0330	HflC and HflK could
FYA99_RS02280	COG3422	double-strand break repair
FYA99_RS02295	COG0583	DNA-binding transcription factor activity
FYA99_RS02330	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS02335	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS02340	COG1414	Transcriptional regulator
FYA99_RS02345	COG1024	Enoyl-CoA hydratase
FYA99_RS02350	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYA99_RS02355	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS02360	COG0604	alcohol dehydrogenase
FYA99_RS02365	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS02370	COG0583	DNA-binding transcription factor activity
FYA99_RS02380	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS02395	COG0251	oxidation-reduction process
FYA99_RS02405	COG2031	fatty acid transporter
FYA99_RS02435	COG1278	Cold shock
FYA99_RS02440	COG0583	DNA-binding transcription factor activity
FYA99_RS02450	COG3119	arylsulfatase activity
FYA99_RS02465	COG1228	amidohydrolase
FYA99_RS02470	COG0523	cobalamin synthesis protein
FYA99_RS02475	COG1819	glycosyl
FYA99_RS02560	COG0625	glutathione transferase activity
FYA99_RS02575	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYA99_RS02580	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FYA99_RS02585	COG1652	LysM domain
FYA99_RS02610	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS02615	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYA99_RS02650	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYA99_RS02705	COG0583	DNA-binding transcription factor activity
FYA99_RS02710	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS02720	COG1024	Enoyl-CoA hydratase
FYA99_RS02725	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS02750	COG0028	Belongs to the TPP enzyme family
FYA99_RS02760	COG1024	Enoyl-CoA hydratase
FYA99_RS02760	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA99_RS02765	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS02770	COG1414	Transcriptional regulator
FYA99_RS02790	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS02795	COG1609	Transcriptional regulator
FYA99_RS02820	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYA99_RS02825	COG1024	Enoyl-CoA hydratase
FYA99_RS02840	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS02845	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS02850	COG0583	DNA-binding transcription factor activity
FYA99_RS02865	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS02880	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FYA99_RS02890	COG3976	FMN-binding domain protein
FYA99_RS02890	COG1053	succinate dehydrogenase
FYA99_RS02925	COG0683	leucine binding
FYA99_RS02935	COG1309	transcriptional regulator
FYA99_RS02955	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS02960	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS02965	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS02970	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS02980	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FYA99_RS02990	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
FYA99_RS02995	COG1053	succinate dehydrogenase
FYA99_RS03005	COG2030	dehydratase
FYA99_RS03015	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS03020	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS03025	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS03050	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYA99_RS03070	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYA99_RS03070	COG1902	pentaerythritol trinitrate reductase activity
FYA99_RS03085	COG0427	acetyl-CoA hydrolase
FYA99_RS03090	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS03105	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FYA99_RS03125	COG0183	Belongs to the thiolase family
FYA99_RS03130	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYA99_RS03140	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS03145	COG0583	DNA-binding transcription factor activity
FYA99_RS03150	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS03165	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
FYA99_RS03190	COG1309	transcriptional regulator
FYA99_RS03200	COG1024	Enoyl-CoA hydratase
FYA99_RS03220	COG1024	Enoyl-CoA hydratase
FYA99_RS03225	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS03245	COG0583	DNA-binding transcription factor activity
FYA99_RS03255	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYA99_RS03260	COG4311	Sarcosine oxidase, delta subunit
FYA99_RS03265	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYA99_RS03265	COG0404	The glycine cleavage system catalyzes the degradation of glycine
FYA99_RS03310	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYA99_RS03315	COG0735	belongs to the Fur family
FYA99_RS03325	COG0497	DNA recombination
FYA99_RS03335	COG1420	regulation of RNA biosynthetic process
FYA99_RS03350	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
FYA99_RS03370	COG0612	Peptidase, M16
FYA99_RS03390	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FYA99_RS03425	COG0745	RESPONSE REGULATOR receiver
FYA99_RS03430	COG2205	protein histidine kinase activity
FYA99_RS03435	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
FYA99_RS03440	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
FYA99_RS03460	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FYA99_RS03470	COG1193	negative regulation of DNA recombination
FYA99_RS03475	COG0492	ferredoxin-NADP+ reductase activity
FYA99_RS03480	COG1674	ftsk spoiiie
FYA99_RS03490	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FYA99_RS03525	COG3706	GGDEF domain
FYA99_RS03545	COG2814	Major facilitator Superfamily
FYA99_RS03575	COG3486	L-lysine 6-monooxygenase (NADPH) activity
FYA99_RS03590	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS03595	COG3022	response to hydroperoxide
FYA99_RS03605	COG1289	transmembrane transporter activity
FYA99_RS03610	COG0028	Belongs to the TPP enzyme family
FYA99_RS03615	COG0440	acetolactate synthase activity
FYA99_RS03625	COG1183	phosphatidylcholine synthase activity
FYA99_RS03640	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
FYA99_RS03645	COG1185	polyribonucleotide nucleotidyltransferase activity
FYA99_RS03655	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYA99_RS03675	COG0149	triose-phosphate isomerase activity
FYA99_RS03680	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FYA99_RS03690	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FYA99_RS03700	COG3799	methylaspartate ammonia-lyase activity
FYA99_RS03715	COG0165	Argininosuccinate lyase
FYA99_RS03720	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS03730	COG0583	DNA-binding transcription factor activity
FYA99_RS03735	COG0626	cystathionine gamma-synthase activity
FYA99_RS03740	COG3608	succinylglutamate desuccinylase aspartoacylase
FYA99_RS03760	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYA99_RS03780	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
FYA99_RS03800	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA99_RS03805	COG1733	regulation of RNA biosynthetic process
FYA99_RS03810	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FYA99_RS03815	COG0583	DNA-binding transcription factor activity
FYA99_RS03820	COG1597	lipid kinase activity
FYA99_RS03830	COG0671	phosphoesterase, PA-phosphatase related
FYA99_RS03850	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYA99_RS03855	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYA99_RS03860	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYA99_RS03875	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
FYA99_RS03885	COG1034	ATP synthesis coupled electron transport
FYA99_RS03890	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
FYA99_RS03895	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYA99_RS03905	COG0713	ATP synthesis coupled electron transport
FYA99_RS03920	COG1007	ATP synthesis coupled electron transport
FYA99_RS03930	COG4774	siderophore transport
FYA99_RS03955	COG0028	Belongs to the TPP enzyme family
FYA99_RS03960	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS03965	COG0583	DNA-binding transcription factor activity
FYA99_RS03970	COG0560	Phosphoserine phosphatase
FYA99_RS03975	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FYA99_RS03985	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
FYA99_RS04000	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYA99_RS04005	COG0450	alkyl hydroperoxide reductase
FYA99_RS04020	COG1214	PFAM Peptidase M22, glycoprotease
FYA99_RS04025	COG1573	uracil-dna glycosylase
FYA99_RS04030	COG0477	Major facilitator Superfamily
FYA99_RS04035	COG1196	nuclear chromosome segregation
FYA99_RS04050	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYA99_RS04055	COG0271	Belongs to the BolA IbaG family
FYA99_RS04065	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FYA99_RS04070	COG1122	ATPase activity
FYA99_RS04075	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FYA99_RS04080	COG1268	BioY protein
FYA99_RS04105	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FYA99_RS04140	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FYA99_RS04145	COG2878	Part of a membrane complex involved in electron transport
FYA99_RS04160	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
FYA99_RS04170	COG0251	oxidation-reduction process
FYA99_RS04180	COG3228	Belongs to the MtfA family
FYA99_RS04205	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
FYA99_RS04210	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FYA99_RS04220	COG1530	ribonuclease E activity
FYA99_RS04230	COG0546	phosphoglycolate phosphatase activity
FYA99_RS04235	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FYA99_RS04245	COG3023	N-Acetylmuramoyl-L-alanine amidase
FYA99_RS04260	COG1399	metal-binding, possibly nucleic acid-binding protein
FYA99_RS04265	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FYA99_RS04290	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FYA99_RS04295	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FYA99_RS04320	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FYA99_RS04330	COG0681	Belongs to the peptidase S26 family
FYA99_RS04335	COG0571	ribonuclease III activity
FYA99_RS04340	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FYA99_RS04345	COG1381	Involved in DNA repair and RecF pathway recombination
FYA99_RS04355	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FYA99_RS04365	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS04370	COG0670	Belongs to the BI1 family
FYA99_RS04395	COG0583	DNA-binding transcription factor activity
FYA99_RS04410	COG0583	DNA-binding transcription factor activity
FYA99_RS04420	COG0791	NLP P60 protein
FYA99_RS04425	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYA99_RS04430	COG3193	protein, possibly involved in utilization of glycolate and propanediol
FYA99_RS04440	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYA99_RS04445	COG0697	spore germination
FYA99_RS04450	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
FYA99_RS04465	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FYA99_RS04495	COG1446	asparaginase
FYA99_RS04500	COG4172	Belongs to the ABC transporter superfamily
FYA99_RS04505	COG0747	negative chemotaxis
FYA99_RS04515	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS04535	COG0504	CTP synthase activity
FYA99_RS04540	COG2877	3-deoxy-8-phosphooctulonate synthase activity
FYA99_RS04550	COG0148	phosphopyruvate hydratase activity
FYA99_RS04585	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
FYA99_RS04595	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYA99_RS04620	COG1981	membrane
FYA99_RS04630	COG2828	Protein conserved in bacteria
FYA99_RS04650	COG0039	L-malate dehydrogenase activity
FYA99_RS04655	COG2188	Transcriptional regulator
FYA99_RS04660	COG2009	succinate dehydrogenase
FYA99_RS04665	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
FYA99_RS04670	COG1053	succinate dehydrogenase
FYA99_RS04675	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FYA99_RS04680	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
FYA99_RS04685	COG0372	Belongs to the citrate synthase family
FYA99_RS04700	COG3539	Fimbrial protein
FYA99_RS04705	COG0280	phosphate acetyltransferase
FYA99_RS04705	COG0281	malic enzyme
FYA99_RS04715	COG1522	sequence-specific DNA binding
FYA99_RS04725	COG0567	Dehydrogenase, E1 component
FYA99_RS04730	COG0508	dehydrogenase complex catalyzes the overall conversion of
FYA99_RS04735	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYA99_RS04740	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
FYA99_RS04745	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS04750	COG0583	DNA-binding transcription factor activity
FYA99_RS04755	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS04765	COG2175	clavaminate synthase activity
FYA99_RS04770	COG1595	DNA-templated transcription, initiation
FYA99_RS04780	COG4774	siderophore transport
FYA99_RS04805	COG2183	response to ionizing radiation
FYA99_RS04810	COG1199	ATP-dependent helicase activity
FYA99_RS04820	COG0564	pseudouridine synthase activity
FYA99_RS04830	COG3243	poly(R)-hydroxyalkanoic acid synthase
FYA99_RS04835	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS04840	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
FYA99_RS04855	COG0672	)-iron permease
FYA99_RS04875	COG2823	Periplasmic or secreted lipoprotein
FYA99_RS04885	COG3237	CsbD-like
FYA99_RS04890	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FYA99_RS04890	COG1181	Belongs to the D-alanine--D-alanine ligase family
FYA99_RS04900	COG1132	(ABC) transporter
FYA99_RS04915	COG2833	Protein of unknown function (DUF455)
FYA99_RS04920	COG2951	lytic endotransglycosylase activity
FYA99_RS04930	COG0589	response to stress
FYA99_RS04935	COG3706	GGDEF domain
FYA99_RS04940	COG2814	Major facilitator Superfamily
FYA99_RS04945	COG0778	Nitroreductase
FYA99_RS04965	COG0436	Aminotransferase
FYA99_RS04970	COG0028	Belongs to the TPP enzyme family
FYA99_RS04970	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
FYA99_RS04995	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS05005	COG2079	MmgE PrpD family protein
FYA99_RS05010	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS05015	COG1053	succinate dehydrogenase
FYA99_RS05040	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYA99_RS05055	COG0583	DNA-binding transcription factor activity
FYA99_RS05125	COG2814	Major facilitator Superfamily
FYA99_RS05160	COG0287	Prephenate dehydrogenase
FYA99_RS05190	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
FYA99_RS05195	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
FYA99_RS05215	COG2951	lytic endotransglycosylase activity
FYA99_RS05220	COG0123	including yeast histone deacetylase and acetoin utilization protein
FYA99_RS05235	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS05240	COG0450	alkyl hydroperoxide reductase
FYA99_RS05270	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYA99_RS05300	COG1053	succinate dehydrogenase
FYA99_RS05300	COG3976	FMN-binding domain protein
FYA99_RS05305	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS05335	COG3842	ATPase activity
FYA99_RS05345	COG0395	ABC-type sugar transport system, permease component
FYA99_RS05380	COG0420	3'-5' exonuclease activity
FYA99_RS05395	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FYA99_RS05395	COG2111	Na H antiporter
FYA99_RS05400	COG1006	Multisubunit Na H antiporter MnhC subunit
FYA99_RS05405	COG0651	ATP synthesis coupled electron transport
FYA99_RS05410	COG1863	multisubunit Na H antiporter MnhE subunit
FYA99_RS05415	COG2212	antiporter activity
FYA99_RS05435	COG0590	tRNA wobble adenosine to inosine editing
FYA99_RS05440	COG1619	proteins homologs of microcin C7 resistance protein MccF
FYA99_RS05445	COG1024	Enoyl-CoA hydratase
FYA99_RS05450	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYA99_RS05460	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYA99_RS05465	COG0488	(ABC) transporter
FYA99_RS05495	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYA99_RS05500	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FYA99_RS05505	COG2252	PERMEase
FYA99_RS05515	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
FYA99_RS05555	COG0789	Transcriptional regulator
FYA99_RS05565	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYA99_RS05565	COG0678	peroxiredoxin activity
FYA99_RS05575	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
FYA99_RS05580	COG0584	glycerophosphoryl diester phosphodiesterase
FYA99_RS05585	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYA99_RS05595	COG4181	ATPase activity
FYA99_RS05650	COG2197	response regulator
FYA99_RS05655	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYA99_RS05655	COG3210	domain, Protein
FYA99_RS05655	COG3064	Membrane
FYA99_RS05665	COG3121	Chaperone
FYA99_RS05670	COG3188	usher protein
FYA99_RS05675	COG3539	Fimbrial protein
FYA99_RS05680	COG2831	hemolysin activation secretion protein
FYA99_RS05695	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYA99_RS05720	COG0583	DNA-binding transcription factor activity
FYA99_RS05740	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA99_RS05745	COG0765	amino acid transport
FYA99_RS05750	COG1126	abc transporter atp-binding protein
FYA99_RS05755	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FYA99_RS05760	COG1758	RNA polymerase activity
FYA99_RS05765	COG0194	GDP metabolic process
FYA99_RS05770	COG3258	Cytochrome c
FYA99_RS05775	COG2863	cytochrome
FYA99_RS05780	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS05785	COG0791	NLP P60 protein
FYA99_RS05790	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FYA99_RS05835	COG5001	Diguanylate cyclase
FYA99_RS05835	COG5002	protein histidine kinase activity
FYA99_RS05845	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FYA99_RS05850	COG0174	glutamine synthetase
FYA99_RS05860	COG2204	response regulator
FYA99_RS05865	COG0583	DNA-binding transcription factor activity
FYA99_RS05870	COG1741	Belongs to the pirin family
FYA99_RS05875	COG1741	Belongs to the pirin family
FYA99_RS05880	COG3842	ATPase activity
FYA99_RS05890	COG1840	ABC-type Fe3 transport system, periplasmic component
FYA99_RS05900	COG0583	DNA-binding transcription factor activity
FYA99_RS05905	COG2814	Major facilitator Superfamily
FYA99_RS05910	COG0656	L-ascorbic acid biosynthetic process
FYA99_RS05915	COG3468	outer membrane autotransporter barrel domain protein
FYA99_RS05925	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FYA99_RS05930	COG0583	DNA-binding transcription factor activity
FYA99_RS05945	COG0783	Belongs to the Dps family
FYA99_RS05960	COG0463	Glycosyl transferase, family 2
FYA99_RS05980	COG0438	transferase activity, transferring glycosyl groups
FYA99_RS05995	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FYA99_RS06015	COG0300	oxidoreductase activity
FYA99_RS06030	COG0604	alcohol dehydrogenase
FYA99_RS06030	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS06030	COG3321	synthase
FYA99_RS06050	COG0395	ABC-type sugar transport system, permease component
FYA99_RS06055	COG1175	transmembrane transport
FYA99_RS06060	COG1653	transport
FYA99_RS06070	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
FYA99_RS06080	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYA99_RS06100	COG1794	racemase activity, acting on amino acids and derivatives
FYA99_RS06105	COG0625	glutathione transferase activity
FYA99_RS06110	COG2133	pyrroloquinoline quinone binding
FYA99_RS06135	COG2363	Small membrane protein
FYA99_RS06150	COG1464	Belongs to the NlpA lipoprotein family
FYA99_RS06160	COG0688	phosphatidylethanolamine metabolic process
FYA99_RS06175	COG0095	Lipoate-protein ligase
FYA99_RS06190	COG0625	glutathione transferase activity
FYA99_RS06195	COG0386	Belongs to the glutathione peroxidase family
FYA99_RS06235	COG2259	Doxx family
FYA99_RS06250	COG0667	Aldo Keto reductase
FYA99_RS06295	COG1640	4-alpha-glucanotransferase
FYA99_RS06345	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FYA99_RS06370	COG0747	negative chemotaxis
FYA99_RS06375	COG0601	transmembrane transport
FYA99_RS06380	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS06385	COG4172	Belongs to the ABC transporter superfamily
FYA99_RS06440	COG0425	Belongs to the sulfur carrier protein TusA family
FYA99_RS06465	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FYA99_RS06475	COG0642	Histidine kinase
FYA99_RS06495	COG0105	UTP biosynthetic process
FYA99_RS06520	COG2976	Protein conserved in bacteria
FYA99_RS06525	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYA99_RS06530	COG1160	GTP binding
FYA99_RS06540	COG1923	regulation of RNA biosynthetic process
FYA99_RS06545	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FYA99_RS06550	COG0330	HflC and HflK could
FYA99_RS06555	COG0330	HflC and HflK could
FYA99_RS06570	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
FYA99_RS06575	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FYA99_RS06585	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FYA99_RS06645	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYA99_RS06650	COG0683	leucine binding
FYA99_RS06655	COG4638	Rieske (2fe-2S)
FYA99_RS06665	COG1024	Enoyl-CoA hydratase
FYA99_RS06675	COG0633	Ferredoxin
FYA99_RS06680	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS06695	COG0183	Belongs to the thiolase family
FYA99_RS06705	COG4692	amylo-alpha-1,6-glucosidase activity
FYA99_RS06710	COG0583	DNA-binding transcription factor activity
FYA99_RS06730	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS06735	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS06755	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FYA99_RS06765	COG3829	transcription factor binding
FYA99_RS06795	COG0833	amino acid
FYA99_RS06815	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS06820	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FYA99_RS06825	COG0439	Biotin carboxylase
FYA99_RS06840	COG0395	ABC-type sugar transport system, permease component
FYA99_RS06845	COG1176	ABC-type spermidine putrescine transport system, permease component I
FYA99_RS06860	COG1414	Transcriptional regulator
FYA99_RS06865	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS06875	COG2188	Transcriptional regulator
FYA99_RS06900	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS06905	COG0583	DNA-binding transcription factor activity
FYA99_RS06925	COG1172	Belongs to the binding-protein-dependent transport system permease family
FYA99_RS06935	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYA99_RS06945	COG1228	amidohydrolase
FYA99_RS06950	COG2267	carboxylic ester hydrolase activity
FYA99_RS06975	COG0861	Integral membrane protein TerC family
FYA99_RS06980	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS06995	COG1262	PFAM Formylglycine-generating sulfatase enzyme
FYA99_RS07035	COG3119	arylsulfatase activity
FYA99_RS07055	COG2197	response regulator
FYA99_RS07065	COG2944	sequence-specific DNA binding
FYA99_RS07070	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
FYA99_RS07075	COG0625	glutathione transferase activity
FYA99_RS07090	COG3119	arylsulfatase activity
FYA99_RS07105	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS07110	COG0183	Belongs to the thiolase family
FYA99_RS07125	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS07130	COG0583	DNA-binding transcription factor activity
FYA99_RS07135	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS07145	COG1024	Enoyl-CoA hydratase
FYA99_RS07155	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS07160	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA99_RS07160	COG1024	Enoyl-CoA hydratase
FYA99_RS07170	COG1454	alcohol dehydrogenase
FYA99_RS07175	COG0824	Thioesterase
FYA99_RS07200	COG0431	NADPH-dependent FMN reductase
FYA99_RS07230	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS07235	COG0583	DNA-binding transcription factor activity
FYA99_RS07260	COG0330	HflC and HflK could
FYA99_RS07280	COG3043	anaerobic respiration
FYA99_RS07285	COG3005	denitrification pathway
FYA99_RS07320	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYA99_RS07350	COG4948	Mandelate Racemase Muconate Lactonizing
FYA99_RS07355	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS07385	COG0583	DNA-binding transcription factor activity
FYA99_RS07405	COG1695	Transcriptional regulator
FYA99_RS07415	COG3568	Endonuclease Exonuclease Phosphatase
FYA99_RS07425	COG0392	lysyltransferase activity
FYA99_RS07440	COG1546	Belongs to the CinA family
FYA99_RS07440	COG1058	Belongs to the CinA family
FYA99_RS07460	COG4575	ribosome binding
FYA99_RS07465	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
FYA99_RS07475	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS07530	COG0028	Belongs to the TPP enzyme family
FYA99_RS07535	COG2204	response regulator
FYA99_RS07540	COG2204	response regulator
FYA99_RS07585	COG0861	Integral membrane protein TerC family
FYA99_RS07590	COG0861	Integral membrane protein TerC family
FYA99_RS07595	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FYA99_RS07600	COG0045	succinate-CoA ligase (ADP-forming) activity
FYA99_RS07620	COG2137	regulation of response to DNA damage stimulus
FYA99_RS07625	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
FYA99_RS07645	COG1024	Enoyl-CoA hydratase
FYA99_RS07645	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA99_RS07650	COG3842	ATPase activity
FYA99_RS07665	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS07680	COG0183	Belongs to the thiolase family
FYA99_RS07685	COG0583	DNA-binding transcription factor activity
FYA99_RS07690	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS07705	COG0540	Belongs to the ATCase OTCase family
FYA99_RS07740	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYA99_RS07755	COG1522	sequence-specific DNA binding
FYA99_RS07765	COG2367	Beta-lactamase
FYA99_RS07780	COG0500	methyltransferase
FYA99_RS07820	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
FYA99_RS07825	COG0291	Belongs to the bacterial ribosomal protein bL35 family
FYA99_RS07845	COG0004	ammonium transporteR
FYA99_RS07860	COG1309	transcriptional regulator
FYA99_RS07895	COG0506	proline dehydrogenase activity
FYA99_RS07895	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYA99_RS07895	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYA99_RS07905	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FYA99_RS07905	COG3008	intermembrane lipid transfer
FYA99_RS07910	COG2995	paraquat-inducible protein a
FYA99_RS07915	COG0542	response to heat
FYA99_RS07920	COG4953	penicillin-binding protein 1C
FYA99_RS07935	COG1278	Cold shock
FYA99_RS07945	COG0183	Belongs to the thiolase family
FYA99_RS07950	COG0038	chloride channel
FYA99_RS07955	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FYA99_RS07965	COG0811	peptide transport
FYA99_RS07970	COG0848	biopolymer transport protein
FYA99_RS07980	COG2835	tetraacyldisaccharide 4'-kinase activity
FYA99_RS08000	COG0728	peptidoglycan biosynthetic process
FYA99_RS08010	COG0268	Binds directly to 16S ribosomal RNA
FYA99_RS08030	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYA99_RS08035	COG2186	Transcriptional regulator
FYA99_RS08055	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FYA99_RS08065	COG0583	DNA-binding transcription factor activity
FYA99_RS08080	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FYA99_RS08090	COG3158	transport of potassium into the cell
FYA99_RS08095	COG0642	Histidine kinase
FYA99_RS08125	COG0776	regulation of translation
FYA99_RS08130	COG3128	pkhd-type hydroxylase
FYA99_RS08140	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYA99_RS08145	COG0557	exoribonuclease II activity
FYA99_RS08170	COG0679	Auxin Efflux Carrier
FYA99_RS08180	COG0069	glutamate synthase activity
FYA99_RS08185	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYA99_RS08195	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
FYA99_RS08235	COG3706	GGDEF domain
FYA99_RS08270	COG3909	cytochrome
FYA99_RS08275	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FYA99_RS08280	COG0625	glutathione transferase activity
FYA99_RS08285	COG0730	response to heat
FYA99_RS08295	COG0583	DNA-binding transcription factor activity
FYA99_RS08335	COG2819	hydrolase of the alpha beta superfamily
FYA99_RS08340	COG0247	lactate metabolic process
FYA99_RS08350	COG0277	FAD linked oxidase domain protein
FYA99_RS08355	COG0277	FAD linked oxidase domain protein
FYA99_RS08360	COG3064	Membrane
FYA99_RS08360	COG3210	domain, Protein
FYA99_RS08360	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYA99_RS08360	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYA99_RS08360	COG3064	Membrane
FYA99_RS08360	COG3210	domain, Protein
FYA99_RS08365	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYA99_RS08370	COG0312	modulator of DNA gyrase
FYA99_RS08390	COG0308	aminopeptidase N
FYA99_RS08395	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
FYA99_RS08415	COG0436	Aminotransferase
FYA99_RS08420	COG3737	Protein of unknown function (DUF498/DUF598)
FYA99_RS08425	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FYA99_RS08430	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
FYA99_RS08435	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FYA99_RS08445	COG0305	Participates in initiation and elongation during chromosome replication
FYA99_RS08465	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
FYA99_RS08470	COG2965	DNA replication, synthesis of RNA primer
FYA99_RS08475	COG0360	Binds together with S18 to 16S ribosomal RNA
FYA99_RS08480	COG1469	GTP cyclohydrolase I activity
FYA99_RS08490	COG0142	geranyltranstransferase activity
FYA99_RS08495	COG1722	exodeoxyribonuclease VII activity
FYA99_RS08505	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS08540	COG1840	ABC-type Fe3 transport system, periplasmic component
FYA99_RS08545	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYA99_RS08550	COG1178	ABC-type Fe3 transport system permease component
FYA99_RS08555	COG3842	ATPase activity
FYA99_RS08560	COG0583	DNA-binding transcription factor activity
FYA99_RS08580	COG0501	Belongs to the peptidase M48B family
FYA99_RS08590	COG0697	spore germination
FYA99_RS08600	COG1846	Transcriptional regulator
FYA99_RS08620	COG0473	3-isopropylmalate dehydrogenase activity
FYA99_RS08630	COG0747	negative chemotaxis
FYA99_RS08640	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS08650	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FYA99_RS08675	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS08685	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYA99_RS08690	COG0433	COG0433 Predicted ATPase
FYA99_RS08700	COG0151	Belongs to the GarS family
FYA99_RS08715	COG0799	negative regulation of ribosome biogenesis
FYA99_RS08730	COG3468	outer membrane autotransporter barrel domain protein
FYA99_RS08770	COG0385	Bile acid
FYA99_RS08775	COG0427	acetyl-CoA hydrolase
FYA99_RS08780	COG0583	DNA-binding transcription factor activity
FYA99_RS08785	COG3264	Mechanosensitive ion channel
FYA99_RS08785	COG1511	domain protein
FYA99_RS08800	COG0730	response to heat
FYA99_RS08805	COG0697	spore germination
FYA99_RS08840	COG2885	chlorophyll binding
FYA99_RS08860	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FYA99_RS08865	COG3384	dioxygenase
FYA99_RS08880	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
FYA99_RS08885	COG3474	cytochrome
FYA99_RS08950	COG4964	Belongs to the GSP D family
FYA99_RS09000	COG4172	Belongs to the ABC transporter superfamily
FYA99_RS09005	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS09010	COG0601	transmembrane transport
FYA99_RS09015	COG0747	negative chemotaxis
FYA99_RS09025	COG0598	Magnesium transport protein CorA
FYA99_RS09045	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FYA99_RS09055	COG0483	inositol monophosphate 1-phosphatase activity
FYA99_RS09080	COG1045	serine acetyltransferase
FYA99_RS09085	COG0166	Belongs to the GPI family
FYA99_RS09100	COG2197	response regulator
FYA99_RS09115	COG0183	Belongs to the thiolase family
FYA99_RS09130	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA99_RS09130	COG1024	Enoyl-CoA hydratase
FYA99_RS09135	COG0183	Belongs to the thiolase family
FYA99_RS09145	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS09155	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS09170	COG1017	nitric oxide dioxygenase activity
FYA99_RS09170	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYA99_RS09175	COG2010	Cytochrome c
FYA99_RS09175	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYA99_RS09180	COG1335	isochorismatase
FYA99_RS09185	COG2309	aminopeptidase activity
FYA99_RS09190	COG0596	Alpha beta hydrolase
FYA99_RS09200	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYA99_RS09205	COG2080	2 iron, 2 sulfur cluster binding
FYA99_RS09235	COG1846	Transcriptional regulator
FYA99_RS09255	COG1649	PFAM Uncharacterised BCR, COG1649
FYA99_RS09255	COG0726	polysaccharide deacetylase
FYA99_RS09260	COG1215	transferase activity, transferring glycosyl groups
FYA99_RS09270	COG1902	pentaerythritol trinitrate reductase activity
FYA99_RS09295	COG0251	oxidation-reduction process
FYA99_RS09305	COG1832	CoA-binding protein
FYA99_RS09310	COG1414	Transcriptional regulator
FYA99_RS09315	COG1902	pentaerythritol trinitrate reductase activity
FYA99_RS09315	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYA99_RS09325	COG3842	ATPase activity
FYA99_RS09350	COG0583	DNA-binding transcription factor activity
FYA99_RS09360	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS09370	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYA99_RS09385	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYA99_RS09385	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYA99_RS09410	COG0527	aspartate kinase activity
FYA99_RS09420	COG0825	malonyl-CoA metabolic process
FYA99_RS09435	COG3063	Type IV pilus biogenesis stability protein PilW
FYA99_RS09455	COG1253	flavin adenine dinucleotide binding
FYA99_RS09460	COG0483	inositol monophosphate 1-phosphatase activity
FYA99_RS09480	COG0668	transmembrane transport
FYA99_RS09515	COG3360	Dodecin
FYA99_RS09525	COG2850	peptidyl-arginine hydroxylation
FYA99_RS09535	COG3539	Fimbrial protein
FYA99_RS09540	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
FYA99_RS09545	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYA99_RS09550	COG1994	Peptidase M50
FYA99_RS09555	COG0009	L-threonylcarbamoyladenylate synthase
FYA99_RS09560	COG2321	neutral zinc metallopeptidase
FYA99_RS09600	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYA99_RS09605	COG1366	Belongs to the anti-sigma-factor antagonist family
FYA99_RS09615	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FYA99_RS09625	COG2770	Histidine kinase
FYA99_RS09625	COG2208	phosphoserine phosphatase activity
FYA99_RS09660	COG4792	protein secretion
FYA99_RS09665	COG4791	protein targeting
FYA99_RS09670	COG4794	Type iii secretion
FYA99_RS09710	COG4669	(LipO)protein
FYA99_RS09810	COG0251	oxidation-reduction process
FYA99_RS09850	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS09900	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYA99_RS09915	COG0583	DNA-binding transcription factor activity
FYA99_RS09920	COG3971	2-oxopent-4-enoate hydratase activity
FYA99_RS09950	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYA99_RS09965	COG0511	ligase activity, forming carbon-carbon bonds
FYA99_RS09975	COG0439	Biotin carboxylase
FYA99_RS09980	COG2188	Transcriptional regulator
FYA99_RS10005	COG0511	ligase activity, forming carbon-carbon bonds
FYA99_RS10015	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
FYA99_RS10025	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS10035	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
FYA99_RS10060	COG1132	(ABC) transporter
FYA99_RS10070	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FYA99_RS10110	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FYA99_RS10145	COG0583	DNA-binding transcription factor activity
FYA99_RS10165	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS10195	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYA99_RS10210	COG1126	abc transporter atp-binding protein
FYA99_RS10215	COG0765	amino acid transport
FYA99_RS10220	COG4597	amino acid ABC transporter
FYA99_RS10225	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA99_RS10230	COG1473	amidohydrolase
FYA99_RS10235	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYA99_RS10240	COG1522	sequence-specific DNA binding
FYA99_RS10250	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYA99_RS10260	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYA99_RS10265	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYA99_RS10270	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYA99_RS10290	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYA99_RS10295	COG0154	amidase activity
FYA99_RS10305	COG1137	ATPase activity
FYA99_RS10335	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA99_RS10340	COG2072	flavoprotein involved in K transport
FYA99_RS10375	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYA99_RS10405	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYA99_RS10505	COG0248	Ppx GppA phosphatase
FYA99_RS10525	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FYA99_RS10535	COG1534	Rna-binding protein
FYA99_RS10545	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYA99_RS10550	COG0840	transmembrane signaling receptor activity
FYA99_RS10555	COG2233	PERMEase
FYA99_RS10570	COG3842	ATPase activity
FYA99_RS10580	COG0406	alpha-ribazole phosphatase activity
FYA99_RS10585	COG4221	oxidoreductase activity
FYA99_RS10600	COG0084	hydrolase, TatD family'
FYA99_RS10605	COG1136	(ABC) transporter
FYA99_RS10620	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FYA99_RS10630	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS10650	COG1022	Amp-dependent synthetase and ligase
FYA99_RS10680	COG1024	Enoyl-CoA hydratase
FYA99_RS10695	COG0633	Ferredoxin
FYA99_RS10710	COG0316	Belongs to the HesB IscA family
FYA99_RS10715	COG0822	iron-sulfur transferase activity
FYA99_RS10720	COG1104	cysteine desulfurase activity
FYA99_RS10730	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FYA99_RS10750	COG3468	outer membrane autotransporter barrel domain protein
FYA99_RS10760	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FYA99_RS10775	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS10780	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS10795	COG1024	Enoyl-CoA hydratase
FYA99_RS10810	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS10815	COG0583	DNA-binding transcription factor activity
FYA99_RS10820	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FYA99_RS10830	COG0740	serine-type endopeptidase activity
FYA99_RS10845	COG1278	Cold shock
FYA99_RS10855	COG1278	Cold shock
FYA99_RS10885	COG0436	Aminotransferase
FYA99_RS10900	COG2890	protein-(glutamine-N5) methyltransferase activity
FYA99_RS10905	COG0488	(ABC) transporter
FYA99_RS10910	COG4771	TonB-dependent receptor
FYA99_RS10915	COG0210	DNA helicase
FYA99_RS10930	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FYA99_RS10930	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYA99_RS10935	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FYA99_RS10940	COG0196	riboflavin kinase activity
FYA99_RS10950	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
FYA99_RS10955	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FYA99_RS10965	COG1522	sequence-specific DNA binding
FYA99_RS10990	COG1126	abc transporter atp-binding protein
FYA99_RS10995	COG0765	amino acid transport
FYA99_RS11000	COG0765	amino acid transport
FYA99_RS11005	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA99_RS11015	COG2423	ornithine cyclodeaminase activity
FYA99_RS11020	COG1764	response to oxidative stress
FYA99_RS11030	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FYA99_RS11035	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYA99_RS11050	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
FYA99_RS11055	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FYA99_RS11060	COG2197	response regulator
FYA99_RS11070	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FYA99_RS11130	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYA99_RS11145	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FYA99_RS11170	COG1122	ATPase activity
FYA99_RS11200	COG0437	4 iron, 4 sulfur cluster binding
FYA99_RS11205	COG3383	formate dehydrogenase (NAD+) activity
FYA99_RS11205	COG0243	molybdopterin cofactor binding
FYA99_RS11235	COG0489	protein tyrosine kinase activity
FYA99_RS11240	COG0746	molybdenum cofactor guanylyltransferase activity
FYA99_RS11245	COG0303	'Molybdopterin
FYA99_RS11250	COG1763	Mo-molybdopterin cofactor biosynthetic process
FYA99_RS11265	COG5001	Diguanylate cyclase
FYA99_RS11270	COG2205	protein histidine kinase activity
FYA99_RS11275	COG0745	RESPONSE REGULATOR receiver
FYA99_RS11290	COG1295	ribonuclease BN
FYA99_RS11300	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FYA99_RS11335	COG4964	Belongs to the GSP D family
FYA99_RS11375	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYA99_RS11410	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FYA99_RS11415	COG3395	kinase activity
FYA99_RS11455	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYA99_RS11460	COG2358	TRAP transporter, solute receptor (TAXI family
FYA99_RS11470	COG2311	Membrane
FYA99_RS11495	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FYA99_RS11510	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FYA99_RS11515	COG1760	l-serine dehydratase
FYA99_RS11520	COG1283	sodium-dependent phosphate transmembrane transporter activity
FYA99_RS11525	COG0412	Dienelactone hydrolase
FYA99_RS11540	COG1611	Belongs to the LOG family
FYA99_RS11575	COG2251	uridine kinase activity
FYA99_RS11575	COG0195	Participates in both transcription termination and antitermination
FYA99_RS11585	COG1187	pseudouridine synthase activity
FYA99_RS11590	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
FYA99_RS11600	COG0583	DNA-binding transcription factor activity
FYA99_RS11610	COG0523	cobalamin synthesis protein
FYA99_RS11630	COG0625	glutathione transferase activity
FYA99_RS11635	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
FYA99_RS11640	COG1047	Peptidyl-prolyl cis-trans
FYA99_RS11700	COG2304	oxidoreductase activity
FYA99_RS11720	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FYA99_RS11725	COG1562	ergosterol biosynthetic process
FYA99_RS11730	COG1562	ergosterol biosynthetic process
FYA99_RS11735	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
FYA99_RS11735	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
FYA99_RS11755	COG1131	(ABC) transporter
FYA99_RS11790	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
FYA99_RS11805	COG5564	TIM-barrel signal transduction protein
FYA99_RS11820	COG3468	outer membrane autotransporter barrel domain protein
FYA99_RS11830	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYA99_RS11845	COG0494	nUDIX hydrolase
FYA99_RS11850	COG3530	Putative quorum-sensing-regulated virulence factor
FYA99_RS11860	COG1595	DNA-templated transcription, initiation
FYA99_RS11865	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYA99_RS11900	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA99_RS11905	COG0765	amino acid transport
FYA99_RS11910	COG0765	amino acid transport
FYA99_RS11940	COG2841	Protein conserved in bacteria
FYA99_RS11945	COG2814	Major facilitator Superfamily
FYA99_RS11960	COG0628	permease
FYA99_RS11965	COG0842	Transport permease protein
FYA99_RS11970	COG1131	(ABC) transporter
FYA99_RS12015	COG3278	Belongs to the heme-copper respiratory oxidase family
FYA99_RS12045	COG4106	trans-aconitate 2-methyltransferase activity
FYA99_RS12045	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FYA99_RS12050	COG1380	Effector of murein hydrolase LrgA
FYA99_RS12055	COG1346	cytolysis
FYA99_RS12065	COG2224	Isocitrate lyase
FYA99_RS12080	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FYA99_RS12100	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
FYA99_RS12115	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA99_RS12140	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FYA99_RS12155	COG2032	superoxide dismutase activity
FYA99_RS12165	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS12170	COG1024	Enoyl-CoA hydratase
FYA99_RS12180	COG1802	Transcriptional regulator
FYA99_RS12190	COG0183	Belongs to the thiolase family
FYA99_RS12195	COG1942	4-Oxalocrotonate Tautomerase
FYA99_RS12205	COG4176	ABC-type proline glycine betaine transport system permease component
FYA99_RS12215	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FYA99_RS12220	COG2814	Major facilitator Superfamily
FYA99_RS12225	COG0227	Belongs to the bacterial ribosomal protein bL28 family
FYA99_RS12230	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FYA99_RS12250	COG2814	Major facilitator Superfamily
FYA99_RS12280	COG0154	amidase activity
FYA99_RS12285	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA99_RS12325	COG1530	ribonuclease E activity
FYA99_RS12330	COG0077	Prephenate dehydratase
FYA99_RS12345	COG1132	(ABC) transporter
FYA99_RS12350	COG0859	PFAM glycosyl transferase family 9
FYA99_RS12375	COG2194	sulfuric ester hydrolase activity
FYA99_RS12380	COG0438	transferase activity, transferring glycosyl groups
FYA99_RS12385	COG0463	Glycosyl transferase, family 2
FYA99_RS12390	COG0726	polysaccharide deacetylase
FYA99_RS12395	COG0438	transferase activity, transferring glycosyl groups
FYA99_RS12410	COG1643	Atp-dependent helicase
FYA99_RS12415	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FYA99_RS12415	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
FYA99_RS12420	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
FYA99_RS12430	COG0704	Plays a role in the regulation of phosphate uptake
FYA99_RS12440	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS12465	COG1177	transmembrane transport
FYA99_RS12470	COG1176	ABC-type spermidine putrescine transport system, permease component I
FYA99_RS12475	COG3842	ATPase activity
FYA99_RS12480	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FYA99_RS12495	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
FYA99_RS12500	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYA99_RS12510	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYA99_RS12510	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYA99_RS12515	COG3539	Fimbrial protein
FYA99_RS12520	COG3539	Fimbrial protein
FYA99_RS12535	COG2050	protein possibly involved in aromatic compounds catabolism
FYA99_RS12540	COG1024	Enoyl-CoA hydratase
FYA99_RS12545	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS12550	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYA99_RS12555	COG2151	metal-sulfur cluster biosynthetic enzyme
FYA99_RS12560	COG3396	Phenylacetate-CoA oxygenase
FYA99_RS12565	COG3460	Phenylacetate-CoA oxygenase
FYA99_RS12570	COG3396	Phenylacetate-CoA oxygenase
FYA99_RS12585	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
FYA99_RS12590	COG0501	Belongs to the peptidase M48B family
FYA99_RS12595	COG1162	GTPase activity
FYA99_RS12600	COG0667	Aldo Keto reductase
FYA99_RS12610	COG0335	large ribosomal subunit rRNA binding
FYA99_RS12640	COG0175	sulfate reduction
FYA99_RS12650	COG4208	sulfate ABC transporter
FYA99_RS12670	COG0602	queuosine metabolic process
FYA99_RS12675	COG0720	synthase
FYA99_RS12680	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYA99_RS12685	COG0235	Class ii aldolase
FYA99_RS12710	COG1566	PFAM secretion protein HlyD family protein
FYA99_RS12720	COG0400	carboxylic ester hydrolase activity
FYA99_RS12745	COG1959	2 iron, 2 sulfur cluster binding
FYA99_RS12785	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FYA99_RS12800	COG0667	Aldo Keto reductase
FYA99_RS12810	COG5265	(ABC) transporter
FYA99_RS12845	COG3468	outer membrane autotransporter barrel domain protein
FYA99_RS12850	COG3468	outer membrane autotransporter barrel domain protein
FYA99_RS12875	COG0840	transmembrane signaling receptor activity
FYA99_RS12880	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FYA99_RS12885	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FYA99_RS12915	COG0583	DNA-binding transcription factor activity
FYA99_RS12925	COG2814	Major facilitator Superfamily
FYA99_RS12955	COG2084	Dehydrogenase
FYA99_RS12960	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS12970	COG1253	flavin adenine dinucleotide binding
FYA99_RS12985	COG2988	succinylglutamate desuccinylase activity
FYA99_RS13010	COG0861	Integral membrane protein TerC family
FYA99_RS13020	COG1595	DNA-templated transcription, initiation
FYA99_RS13050	COG3189	MarR family transcriptional regulator
FYA99_RS13080	COG0028	Belongs to the TPP enzyme family
FYA99_RS13090	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS13095	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FYA99_RS13105	COG1126	abc transporter atp-binding protein
FYA99_RS13130	COG0084	hydrolase, TatD family'
FYA99_RS13135	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FYA99_RS13140	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FYA99_RS13145	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FYA99_RS13170	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FYA99_RS13175	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS13185	COG2867	negative regulation of translational initiation
FYA99_RS13200	COG0330	HflC and HflK could
FYA99_RS13225	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYA99_RS13230	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FYA99_RS13255	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
FYA99_RS13260	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYA99_RS13265	COG0750	zinc metalloprotease
FYA99_RS13280	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FYA99_RS13285	COG0233	cytoplasmic translational termination
FYA99_RS13300	COG0052	Belongs to the universal ribosomal protein uS2 family
FYA99_RS13305	COG0024	Methionine aminopeptidase
FYA99_RS13340	COG0285	dihydrofolate synthase activity
FYA99_RS13370	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FYA99_RS13380	COG1677	Flagellar hook-basal body complex protein FliE
FYA99_RS13390	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FYA99_RS13395	COG1317	bacterial-type flagellum organization
FYA99_RS13400	COG1157	protein secretion by the type III secretion system
FYA99_RS13415	COG1580	Controls the rotational direction of flagella during chemotaxis
FYA99_RS13435	COG1338	Plays a role in the flagellum-specific transport system
FYA99_RS13455	COG0840	transmembrane signaling receptor activity
FYA99_RS13465	COG1256	bacterial-type flagellum assembly
FYA99_RS13495	COG1749	Flagellar hook protein flgE
FYA99_RS13505	COG1558	bacterial-type flagellum-dependent cell motility
FYA99_RS13510	COG1815	bacterial-type flagellum-dependent cell motility
FYA99_RS13545	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
FYA99_RS13550	COG0745	RESPONSE REGULATOR receiver
FYA99_RS13560	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FYA99_RS13565	COG0840	transmembrane signaling receptor activity
FYA99_RS13575	COG2198	Histidine kinase
FYA99_RS13575	COG0643	Histidine kinase
FYA99_RS13580	COG0745	RESPONSE REGULATOR receiver
FYA99_RS13610	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FYA99_RS13615	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYA99_RS13620	COG0508	dehydrogenase complex catalyzes the overall conversion of
FYA99_RS13625	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
FYA99_RS13635	COG4566	intracellular signal transduction
FYA99_RS13640	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
FYA99_RS13645	COG0339	signal peptide processing
FYA99_RS13650	COG1999	signal sequence binding
FYA99_RS13670	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA99_RS13680	COG1187	pseudouridine synthase activity
FYA99_RS13685	COG3161	chorismate lyase activity
FYA99_RS13700	COG1280	lysine exporter protein (LysE YggA)
FYA99_RS13710	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS13715	COG0601	transmembrane transport
FYA99_RS13720	COG0747	negative chemotaxis
FYA99_RS13770	COG0668	transmembrane transport
FYA99_RS13775	COG0165	Argininosuccinate lyase
FYA99_RS13785	COG0789	Transcriptional regulator
FYA99_RS13795	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA99_RS13800	COG0765	amino acid transport
FYA99_RS13805	COG1126	abc transporter atp-binding protein
FYA99_RS13815	COG2346	COG2346, Truncated hemoglobins
FYA99_RS13875	COG1335	isochorismatase
FYA99_RS13880	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYA99_RS13900	COG2837	iron assimilation
FYA99_RS13930	COG4691	Plasmid stability protein
FYA99_RS13965	COG0583	DNA-binding transcription factor activity
FYA99_RS13970	COG2814	Major facilitator Superfamily
FYA99_RS13980	COG0501	Belongs to the peptidase M48B family
FYA99_RS13990	COG0583	DNA-binding transcription factor activity
FYA99_RS14000	COG2188	Transcriptional regulator
FYA99_RS14015	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FYA99_RS14025	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS14030	COG0129	dihydroxy-acid dehydratase activity
FYA99_RS14045	COG0129	dihydroxy-acid dehydratase activity
FYA99_RS14055	COG3622	Belongs to the hyi family
FYA99_RS14060	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYA99_RS14065	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYA99_RS14080	COG0583	DNA-binding transcription factor activity
FYA99_RS14085	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA99_RS14090	COG3246	L-lysine catabolic process to acetate
FYA99_RS14125	COG0697	spore germination
FYA99_RS14140	COG0625	glutathione transferase activity
FYA99_RS14160	COG1280	lysine exporter protein (LysE YggA)
FYA99_RS14165	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYA99_RS14200	COG2207	Transcriptional regulator
FYA99_RS14240	COG1132	(ABC) transporter
FYA99_RS14265	COG0659	secondary active sulfate transmembrane transporter activity
FYA99_RS14300	COG5507	3-demethylubiquinone-9 3-methyltransferase
FYA99_RS14305	COG0384	phenazine biosynthesis protein PhzF
FYA99_RS14310	COG0583	DNA-binding transcription factor activity
FYA99_RS14315	COG2733	membrane
FYA99_RS14330	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS14335	COG3284	Transcriptional regulator
FYA99_RS14340	COG0656	L-ascorbic acid biosynthetic process
FYA99_RS14365	COG0842	Transport permease protein
FYA99_RS14385	COG1802	Transcriptional regulator
FYA99_RS14405	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS14410	COG2188	Transcriptional regulator
FYA99_RS14435	COG0789	Transcriptional regulator
FYA99_RS14450	COG1609	Transcriptional regulator
FYA99_RS14455	COG4172	Belongs to the ABC transporter superfamily
FYA99_RS14465	COG0601	transmembrane transport
FYA99_RS14470	COG0747	negative chemotaxis
FYA99_RS14485	COG1280	lysine exporter protein (LysE YggA)
FYA99_RS14520	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS14525	COG2079	MmgE PrpD family protein
FYA99_RS14545	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS14560	COG3618	amidohydrolase
FYA99_RS14575	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
FYA99_RS14590	COG0625	glutathione transferase activity
FYA99_RS14605	COG2814	Major facilitator Superfamily
FYA99_RS14610	COG0477	Major facilitator Superfamily
FYA99_RS14630	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FYA99_RS14635	COG1061	Type III restriction enzyme res subunit
FYA99_RS14675	COG2197	response regulator
FYA99_RS14680	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
FYA99_RS14700	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYA99_RS14720	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS14740	COG3064	Membrane
FYA99_RS14740	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYA99_RS14740	COG3210	domain, Protein
FYA99_RS14745	COG0047	phosphoribosylformylglycinamidine synthase activity
FYA99_RS14745	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FYA99_RS14750	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYA99_RS14755	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYA99_RS14755	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYA99_RS14770	COG0613	PHP domain protein
FYA99_RS14805	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FYA99_RS14810	COG0505	Belongs to the CarA family
FYA99_RS14820	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS14830	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FYA99_RS14835	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS14850	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FYA99_RS14860	COG1074	ATP-dependent DNA helicase activity
FYA99_RS14870	COG2814	Major facilitator Superfamily
FYA99_RS14880	COG1686	Belongs to the peptidase S11 family
FYA99_RS14890	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
FYA99_RS14895	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FYA99_RS14900	COG4974	Belongs to the 'phage' integrase family
FYA99_RS14905	COG0583	DNA-binding transcription factor activity
FYA99_RS14910	COG0028	Belongs to the TPP enzyme family
FYA99_RS14930	COG1126	abc transporter atp-binding protein
FYA99_RS14935	COG0765	amino acid transport
FYA99_RS14950	COG1414	Transcriptional regulator
FYA99_RS14955	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA99_RS14960	COG0009	L-threonylcarbamoyladenylate synthase
FYA99_RS14965	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FYA99_RS14970	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FYA99_RS14975	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FYA99_RS15000	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
FYA99_RS15050	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FYA99_RS15060	COG0739	heme binding
FYA99_RS15070	COG0521	Mo-molybdopterin cofactor biosynthetic process
FYA99_RS15075	COG0306	phosphate transporter
FYA99_RS15085	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
FYA99_RS15115	COG0625	glutathione transferase activity
FYA99_RS15130	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FYA99_RS15135	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FYA99_RS15145	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FYA99_RS15150	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FYA99_RS15155	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FYA99_RS15160	COG2732	(Barnase) inhibitor
FYA99_RS15170	COG0280	phosphate acetyltransferase
FYA99_RS15170	COG0281	malic enzyme
FYA99_RS15180	COG0436	Aminotransferase
FYA99_RS15185	COG0741	lytic transglycosylase activity
FYA99_RS15230	COG2027	D-alanyl-D-alanine carboxypeptidase
FYA99_RS15240	COG0343	queuine tRNA-ribosyltransferase activity
FYA99_RS15245	COG1862	Preprotein translocase
FYA99_RS15250	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYA99_RS15255	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYA99_RS15270	COG1702	phosphate starvation-inducible protein PhoH
FYA99_RS15280	COG4535	Mg2 and Co2 transporter CorC
FYA99_RS15290	COG0667	Aldo Keto reductase
FYA99_RS15310	COG1802	Transcriptional regulator
FYA99_RS15320	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS15335	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS15340	COG0523	cobalamin synthesis protein
FYA99_RS15345	COG1335	isochorismatase
FYA99_RS15350	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
FYA99_RS15355	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FYA99_RS15400	COG0697	spore germination
FYA99_RS15410	COG0678	peroxiredoxin activity
FYA99_RS15420	COG0412	Dienelactone hydrolase
FYA99_RS15435	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
FYA99_RS15445	COG0521	Mo-molybdopterin cofactor biosynthetic process
FYA99_RS15450	COG0303	'Molybdopterin
FYA99_RS15455	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FYA99_RS15475	COG3383	formate dehydrogenase (NAD+) activity
FYA99_RS15490	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FYA99_RS15510	COG5006	permease, DMT superfamily
FYA99_RS15525	COG0477	Major facilitator Superfamily
FYA99_RS15530	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FYA99_RS15535	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYA99_RS15540	COG1845	cytochrome c oxidase, subunit III
FYA99_RS15545	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FYA99_RS15555	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS15580	COG1666	GTP binding
FYA99_RS15645	COG0640	Transcriptional regulator
FYA99_RS15650	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FYA99_RS15655	COG1845	cytochrome c oxidase, subunit III
FYA99_RS15660	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYA99_RS15670	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
FYA99_RS15695	COG0583	DNA-binding transcription factor activity
FYA99_RS15705	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS15710	COG0583	DNA-binding transcription factor activity
FYA99_RS15740	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYA99_RS15750	COG2900	Belongs to the SlyX family
FYA99_RS15770	COG2207	Transcriptional regulator
FYA99_RS15770	COG1917	Cupin 2, conserved barrel domain protein
FYA99_RS15785	COG2070	2-Nitropropane dioxygenase
FYA99_RS15795	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FYA99_RS15800	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FYA99_RS15835	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FYA99_RS15840	COG0596	Alpha beta hydrolase
FYA99_RS15870	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYA99_RS15880	COG1294	oxidase, subunit
FYA99_RS15885	COG1271	oxidase subunit
FYA99_RS15905	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FYA99_RS15905	COG2169	Transcriptional regulator
FYA99_RS15920	COG3945	hemerythrin HHE cation binding domain
FYA99_RS15945	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYA99_RS15945	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYA99_RS15950	COG0154	amidase activity
FYA99_RS15970	COG2203	Gaf domain
FYA99_RS15970	COG2199	diguanylate cyclase activity
FYA99_RS15980	COG1024	Enoyl-CoA hydratase
FYA99_RS15990	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS16015	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYA99_RS16030	COG0840	transmembrane signaling receptor activity
FYA99_RS16050	COG1309	transcriptional regulator
FYA99_RS16055	COG2076	Multidrug Resistance protein
FYA99_RS16060	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS16065	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS16070	COG1309	transcriptional regulator
FYA99_RS16080	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS16090	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FYA99_RS16100	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA99_RS16100	COG0493	'glutamate synthase
FYA99_RS16105	COG1538	Outer membrane efflux protein
FYA99_RS16115	COG2274	protein secretion by the type I secretion system
FYA99_RS16120	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYA99_RS16145	COG1335	isochorismatase
FYA99_RS16155	COG1418	mRNA catabolic process
FYA99_RS16195	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS16205	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS16215	COG1522	sequence-specific DNA binding
FYA99_RS16220	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS16225	COG0307	riboflavin synthase, alpha
FYA99_RS16230	COG2807	transmembrane transport
FYA99_RS16235	COG0590	tRNA wobble adenosine to inosine editing
FYA99_RS16245	COG0583	DNA-binding transcription factor activity
FYA99_RS16250	COG1902	pentaerythritol trinitrate reductase activity
FYA99_RS16270	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYA99_RS16275	COG0251	oxidation-reduction process
FYA99_RS16280	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYA99_RS16295	COG1414	Transcriptional regulator
FYA99_RS16300	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS16315	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS16325	COG1024	Enoyl-CoA hydratase
FYA99_RS16330	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS16335	COG0154	amidase activity
FYA99_RS16360	COG2188	Transcriptional regulator
FYA99_RS16365	COG3795	YCII-related domain
FYA99_RS16370	COG0387	Pfam Sodium calcium exchanger
FYA99_RS16380	COG3685	Protein conserved in bacteria
FYA99_RS16420	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS16425	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS16430	COG1024	Enoyl-CoA hydratase
FYA99_RS16435	COG1024	Enoyl-CoA hydratase
FYA99_RS16450	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS16455	COG1024	Enoyl-CoA hydratase
FYA99_RS16455	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA99_RS16510	COG2199	diguanylate cyclase activity
FYA99_RS16515	COG0583	DNA-binding transcription factor activity
FYA99_RS16520	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS16545	COG0583	DNA-binding transcription factor activity
FYA99_RS16550	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS16555	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS16560	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS16575	COG0405	Gamma-glutamyltransferase
FYA99_RS16590	COG1335	isochorismatase
FYA99_RS16605	COG1414	Transcriptional regulator
FYA99_RS16610	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS16615	COG1053	succinate dehydrogenase
FYA99_RS16620	COG0583	DNA-binding transcription factor activity
FYA99_RS16630	COG1053	succinate dehydrogenase
FYA99_RS16650	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
FYA99_RS16675	COG1252	NADH dehydrogenase
FYA99_RS16680	COG0284	orotidine-5'-phosphate decarboxylase activity
FYA99_RS16685	COG1058	Belongs to the CinA family
FYA99_RS16685	COG1546	Belongs to the CinA family
FYA99_RS16690	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FYA99_RS16700	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYA99_RS16705	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
FYA99_RS16735	COG3639	organic phosphonate transmembrane transporter activity
FYA99_RS16740	COG3639	organic phosphonate transmembrane transporter activity
FYA99_RS16755	COG0742	ribosomal rna small subunit methyltransferase
FYA99_RS16760	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
FYA99_RS16765	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYA99_RS16770	COG3135	benzoate transporter
FYA99_RS16785	COG0640	Transcriptional regulator
FYA99_RS16800	COG0583	DNA-binding transcription factor activity
FYA99_RS16815	COG4172	Belongs to the ABC transporter superfamily
FYA99_RS16820	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS16825	COG0601	transmembrane transport
FYA99_RS16835	COG0281	malic enzyme
FYA99_RS16835	COG0280	phosphate acetyltransferase
FYA99_RS16860	COG2814	Major facilitator Superfamily
FYA99_RS16870	COG1309	transcriptional regulator
FYA99_RS16875	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS16880	COG0745	RESPONSE REGULATOR receiver
FYA99_RS16895	COG0012	GTP binding
FYA99_RS16980	COG1368	sulfuric ester hydrolase activity
FYA99_RS16985	COG0642	Histidine kinase
FYA99_RS16990	COG0745	RESPONSE REGULATOR receiver
FYA99_RS16995	COG0277	FAD linked oxidase domain protein
FYA99_RS17010	COG0166	Belongs to the GPI family
FYA99_RS17015	COG0438	transferase activity, transferring glycosyl groups
FYA99_RS17020	COG0438	transferase activity, transferring glycosyl groups
FYA99_RS17035	COG0438	transferase activity, transferring glycosyl groups
FYA99_RS17050	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FYA99_RS17055	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FYA99_RS17085	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYA99_RS17095	COG0747	negative chemotaxis
FYA99_RS17100	COG0601	transmembrane transport
FYA99_RS17105	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS17110	COG4172	Belongs to the ABC transporter superfamily
FYA99_RS17130	COG1024	Enoyl-CoA hydratase
FYA99_RS17155	COG0509	glycine decarboxylation via glycine cleavage system
FYA99_RS17170	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FYA99_RS17175	COG2081	HI0933 family
FYA99_RS17220	COG0489	protein tyrosine kinase activity
FYA99_RS17265	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FYA99_RS17330	COG3468	outer membrane autotransporter barrel domain protein
FYA99_RS17450	COG5444	nuclease activity
FYA99_RS17495	COG3135	benzoate transporter
FYA99_RS17510	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYA99_RS17570	COG0154	amidase activity
FYA99_RS17580	COG1414	Transcriptional regulator
FYA99_RS17585	COG1473	amidohydrolase
FYA99_RS17595	COG0765	amino acid transport
FYA99_RS17600	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA99_RS17605	COG0436	Aminotransferase
FYA99_RS17610	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYA99_RS17650	COG0626	cystathionine gamma-synthase activity
FYA99_RS17655	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS17660	COG2186	Transcriptional regulator
FYA99_RS17670	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS17675	COG0625	glutathione transferase activity
FYA99_RS17690	COG2267	carboxylic ester hydrolase activity
FYA99_RS17695	COG0583	DNA-binding transcription factor activity
FYA99_RS17710	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS17715	COG0183	Belongs to the thiolase family
FYA99_RS17720	COG1024	Enoyl-CoA hydratase
FYA99_RS17725	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS17735	COG1024	Enoyl-CoA hydratase
FYA99_RS17755	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS17780	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS17785	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS17790	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYA99_RS17795	COG1414	Transcriptional regulator
FYA99_RS17810	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYA99_RS17815	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS17820	COG0431	NADPH-dependent FMN reductase
FYA99_RS17825	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS17845	COG1024	Enoyl-CoA hydratase
FYA99_RS17850	COG1454	alcohol dehydrogenase
FYA99_RS17855	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS17860	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS17865	COG2030	dehydratase
FYA99_RS17875	COG1024	Enoyl-CoA hydratase
FYA99_RS17900	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYA99_RS17910	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYA99_RS17910	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYA99_RS17925	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYA99_RS17940	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYA99_RS17950	COG0405	Gamma-glutamyltransferase
FYA99_RS17965	COG1280	lysine exporter protein (LysE YggA)
FYA99_RS17995	COG0583	DNA-binding transcription factor activity
FYA99_RS18035	COG1414	Transcriptional regulator
FYA99_RS18040	COG1546	Belongs to the CinA family
FYA99_RS18040	COG1058	Belongs to the CinA family
FYA99_RS18055	COG0513	Belongs to the DEAD box helicase family
FYA99_RS18085	COG0429	hydrolase of the alpha beta-hydrolase fold
FYA99_RS18090	COG4783	chaperone-mediated protein folding
FYA99_RS18105	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYA99_RS18120	COG0006	proline dipeptidase activity
FYA99_RS18130	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYA99_RS18175	COG0514	ATP-dependent DNA helicase (RecQ)
FYA99_RS18200	COG1271	oxidase subunit
FYA99_RS18215	COG2894	cell division
FYA99_RS18220	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
FYA99_RS18235	COG0488	(ABC) transporter
FYA99_RS18260	COG4608	Belongs to the ABC transporter superfamily
FYA99_RS18265	COG0444	Belongs to the ABC transporter superfamily
FYA99_RS18270	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS18275	COG0601	transmembrane transport
FYA99_RS18285	COG1215	transferase activity, transferring glycosyl groups
FYA99_RS18300	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FYA99_RS18310	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FYA99_RS18325	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS18330	COG2188	Transcriptional regulator
FYA99_RS18335	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FYA99_RS18340	COG2814	Major facilitator Superfamily
FYA99_RS18350	COG0259	pyridoxamine-phosphate oxidase activity
FYA99_RS18355	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FYA99_RS18370	COG0583	DNA-binding transcription factor activity
FYA99_RS18375	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS18385	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS18390	COG0405	Gamma-glutamyltransferase
FYA99_RS18400	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS18415	COG0802	atpase or kinase
FYA99_RS18420	COG0860	N-Acetylmuramoyl-L-alanine amidase
FYA99_RS18425	COG0586	Pfam SNARE associated Golgi protein
FYA99_RS18455	COG0617	tRNA 3'-terminal CCA addition
FYA99_RS18480	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYA99_RS18485	COG2188	Transcriptional regulator
FYA99_RS18495	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYA99_RS18500	COG1234	tRNA 3'-trailer cleavage
FYA99_RS18505	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS18515	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS18520	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS18525	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA99_RS18530	COG2301	Belongs to the HpcH HpaI aldolase family
FYA99_RS18535	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS18540	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
FYA99_RS18550	COG1024	Enoyl-CoA hydratase
FYA99_RS18560	COG2188	Transcriptional regulator
FYA99_RS18565	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FYA99_RS18570	COG0066	3-isopropylmalate dehydratase activity
FYA99_RS18585	COG0752	glycyl-tRNA synthetase alpha subunit
FYA99_RS18590	COG0751	glycine-tRNA ligase activity
FYA99_RS18595	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FYA99_RS18600	COG0204	Acyl-transferase
FYA99_RS18615	COG0242	peptide deformylase activity
FYA99_RS18620	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS18625	COG0700	Nucleoside recognition
FYA99_RS18630	COG0469	pyruvate kinase activity
FYA99_RS18660	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FYA99_RS18670	COG2154	pterin-4-alpha-carbinolamine dehydratase
FYA99_RS18690	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYA99_RS18695	COG0154	amidase activity
FYA99_RS18705	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS18715	COG0747	negative chemotaxis
FYA99_RS18730	COG0019	diaminopimelate decarboxylase activity
FYA99_RS18745	COG3712	iron ion homeostasis
FYA99_RS18750	COG4774	siderophore transport
FYA99_RS18755	COG2353	YceI-like domain
FYA99_RS18760	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYA99_RS18775	COG0583	DNA-binding transcription factor activity
FYA99_RS18795	COG3384	dioxygenase
FYA99_RS18800	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYA99_RS18835	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS18840	COG1309	transcriptional regulator
FYA99_RS18845	COG2982	Protein involved in outer membrane biogenesis
FYA99_RS18850	COG2818	Glycosylase
FYA99_RS18870	COG1653	transport
FYA99_RS18875	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYA99_RS18880	COG3842	ATPase activity
FYA99_RS18885	COG0395	ABC-type sugar transport system, permease component
FYA99_RS18910	COG2186	Transcriptional regulator
FYA99_RS18930	COG1454	alcohol dehydrogenase
FYA99_RS18945	COG2011	ABC-type metal ion transport system permease component
FYA99_RS18950	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FYA99_RS18955	COG1501	Belongs to the glycosyl hydrolase 31 family
FYA99_RS18970	COG0318	PFAM AMP-dependent synthetase and ligase
FYA99_RS18975	COG1473	amidohydrolase
FYA99_RS18985	COG2855	membrane
FYA99_RS18995	COG2239	Acts as a magnesium transporter
FYA99_RS19010	COG1522	sequence-specific DNA binding
FYA99_RS19015	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYA99_RS19020	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS19045	COG0739	heme binding
FYA99_RS19055	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
FYA99_RS19060	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FYA99_RS19070	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FYA99_RS19100	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FYA99_RS19105	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FYA99_RS19115	COG3116	cell division
FYA99_RS19120	COG0275	rRNA processing
FYA99_RS19125	COG2001	Belongs to the MraZ family
FYA99_RS19135	COG0488	(ABC) transporter
FYA99_RS19140	COG0418	dihydroorotase activity
FYA99_RS19145	COG1473	amidohydrolase
FYA99_RS19195	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FYA99_RS19200	COG4654	Cytochrome c, class I
FYA99_RS19255	COG2084	Dehydrogenase
FYA99_RS19300	COG0824	Thioesterase
FYA99_RS19305	COG0811	peptide transport
FYA99_RS19310	COG0848	biopolymer transport protein
FYA99_RS19335	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYA99_RS19340	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
FYA99_RS19345	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS19360	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYA99_RS19385	COG0183	Belongs to the thiolase family
FYA99_RS19395	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS19400	COG0583	DNA-binding transcription factor activity
FYA99_RS19405	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS19410	COG1024	Enoyl-CoA hydratase
FYA99_RS19420	COG1253	flavin adenine dinucleotide binding
FYA99_RS19425	COG1285	pathogenesis
FYA99_RS19450	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYA99_RS19455	COG0697	spore germination
FYA99_RS19465	COG1073	alpha beta
FYA99_RS19490	COG0463	Glycosyl transferase, family 2
FYA99_RS19500	COG0786	glutamate:sodium symporter activity
FYA99_RS19510	COG2031	fatty acid transporter
FYA99_RS19525	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FYA99_RS19530	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FYA99_RS19540	COG0328	RNA-DNA hybrid ribonuclease activity
FYA99_RS19545	COG2226	methyltransferase
FYA99_RS19550	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FYA99_RS19555	COG1388	LysM domain
FYA99_RS19555	COG0741	lytic transglycosylase activity
FYA99_RS19570	COG2979	Protein of unknown function (DUF533)
FYA99_RS19590	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS19605	COG3119	arylsulfatase activity
FYA99_RS19630	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
FYA99_RS19650	COG0832	Belongs to the urease beta subunit family
FYA99_RS19660	COG0831	urea catabolic process
FYA99_RS19665	COG0829	nickel cation binding
FYA99_RS19680	COG0633	Ferredoxin
FYA99_RS19695	COG2188	Transcriptional regulator
FYA99_RS19700	COG3799	methylaspartate ammonia-lyase activity
FYA99_RS19720	COG2719	SpoVR family
FYA99_RS19725	COG2718	Belongs to the UPF0229 family
FYA99_RS19730	COG2766	serine protein kinase
FYA99_RS19735	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FYA99_RS19735	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FYA99_RS19745	COG4977	sequence-specific DNA binding
FYA99_RS19750	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
FYA99_RS19780	COG0316	Belongs to the HesB IscA family
FYA99_RS19800	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
FYA99_RS19805	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYA99_RS19810	COG0312	modulator of DNA gyrase
FYA99_RS19830	COG1116	anion transmembrane transporter activity
FYA99_RS19835	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS19840	COG1335	isochorismatase
FYA99_RS19845	COG0346	lactoylglutathione lyase activity
FYA99_RS19850	COG0513	Belongs to the DEAD box helicase family
FYA99_RS19860	COG1802	Transcriptional regulator
FYA99_RS19865	COG0045	succinate-CoA ligase (ADP-forming) activity
FYA99_RS19865	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FYA99_RS19865	COG1042	CoA-binding domain protein
FYA99_RS19885	COG1522	sequence-specific DNA binding
FYA99_RS19915	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FYA99_RS19920	COG1696	Membrane protein involved in D-alanine export
FYA99_RS19945	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYA99_RS19960	COG0439	Biotin carboxylase
FYA99_RS19965	COG0511	ligase activity, forming carbon-carbon bonds
FYA99_RS19970	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
FYA99_RS19975	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYA99_RS19980	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FYA99_RS19985	COG3150	esterase
FYA99_RS19990	COG0557	exoribonuclease II activity
FYA99_RS20005	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FYA99_RS20040	COG1678	Uncharacterized ACR, COG1678
FYA99_RS20055	COG0352	thiamine-phosphate diphosphorylase activity
FYA99_RS20085	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS20095	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS20155	COG0494	nUDIX hydrolase
FYA99_RS20180	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
FYA99_RS20205	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
FYA99_RS20210	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
FYA99_RS20240	COG1126	abc transporter atp-binding protein
FYA99_RS20245	COG0765	amino acid transport
FYA99_RS20250	COG4597	amino acid ABC transporter
FYA99_RS20255	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA99_RS20260	COG2884	Cell division ATP-binding protein ftsE
FYA99_RS20265	COG2177	Part of the ABC transporter FtsEX involved in
FYA99_RS20280	COG1194	a g-specific adenine glycosylase
FYA99_RS20300	COG4206	TonB-dependent receptor
FYA99_RS20305	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FYA99_RS20315	COG0351	phosphomethylpyrimidine kinase
FYA99_RS20320	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
FYA99_RS20330	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
FYA99_RS20340	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
FYA99_RS20355	COG2226	methyltransferase
FYA99_RS20360	COG0745	RESPONSE REGULATOR receiver
FYA99_RS20365	COG5002	protein histidine kinase activity
FYA99_RS20375	COG5002	protein histidine kinase activity
FYA99_RS20385	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYA99_RS20390	COG0583	DNA-binding transcription factor activity
FYA99_RS20400	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FYA99_RS20405	COG1984	allophanate hydrolase subunit 2
FYA99_RS20420	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS20430	COG1024	Enoyl-CoA hydratase
FYA99_RS20445	COG1802	Transcriptional regulator
FYA99_RS20455	COG1238	metal cluster binding
FYA99_RS20460	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYA99_RS20465	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYA99_RS20485	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FYA99_RS20490	COG4988	ABC transporter
FYA99_RS20500	COG1294	oxidase, subunit
FYA99_RS20525	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
FYA99_RS20540	COG1137	ATPase activity
FYA99_RS20545	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FYA99_RS20560	COG2010	Cytochrome c
FYA99_RS20560	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYA99_RS20570	COG1660	Displays ATPase and GTPase activities
FYA99_RS20580	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FYA99_RS20595	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
FYA99_RS20600	COG2823	Periplasmic or secreted lipoprotein
FYA99_RS20630	COG0471	metal ion transport
FYA99_RS20635	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYA99_RS20640	COG0772	Belongs to the SEDS family
FYA99_RS20645	COG0768	penicillin binding
FYA99_RS20655	COG1792	Involved in formation and maintenance of cell shape
FYA99_RS20660	COG1077	Cell shape determining protein MreB Mrl
FYA99_RS20685	COG0708	Exodeoxyribonuclease III
FYA99_RS20695	COG2860	membrane
FYA99_RS20705	COG0583	DNA-binding transcription factor activity
FYA99_RS20710	COG0473	3-isopropylmalate dehydrogenase activity
FYA99_RS20735	COG0583	DNA-binding transcription factor activity
FYA99_RS20740	COG2515	1-aminocyclopropane-1-carboxylate deaminase
FYA99_RS20745	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYA99_RS20750	COG0765	amino acid transport
FYA99_RS20755	COG0765	amino acid transport
FYA99_RS20760	COG1126	abc transporter atp-binding protein
FYA99_RS20765	COG1794	racemase activity, acting on amino acids and derivatives
FYA99_RS20770	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYA99_RS20775	COG2223	nitrite transmembrane transporter activity
FYA99_RS20780	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYA99_RS20780	COG2813	Specifically methylates the guanine in position
FYA99_RS20790	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYA99_RS20835	COG0583	DNA-binding transcription factor activity
FYA99_RS20840	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
FYA99_RS20845	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYA99_RS20880	COG0154	amidase activity
FYA99_RS20890	COG1414	Transcriptional regulator
FYA99_RS20900	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYA99_RS20900	COG1024	Enoyl-CoA hydratase
FYA99_RS20910	COG2132	Multicopper oxidase
FYA99_RS20955	COG1024	Enoyl-CoA hydratase
FYA99_RS20960	COG1024	Enoyl-CoA hydratase
FYA99_RS20965	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FYA99_RS20975	COG0747	negative chemotaxis
FYA99_RS20985	COG0601	transmembrane transport
FYA99_RS20990	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS20995	COG0444	Belongs to the ABC transporter superfamily
FYA99_RS21000	COG4608	Belongs to the ABC transporter superfamily
FYA99_RS21010	COG2195	Cleaves the N-terminal amino acid of tripeptides
FYA99_RS21015	COG0210	DNA helicase
FYA99_RS21020	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FYA99_RS21035	COG0355	proton-transporting ATP synthase activity, rotational mechanism
FYA99_RS21055	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FYA99_RS21070	COG0356	it plays a direct role in the translocation of protons across the membrane
FYA99_RS21085	COG1024	Enoyl-CoA hydratase
FYA99_RS21110	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYA99_RS21120	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYA99_RS21125	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
FYA99_RS21130	COG2967	ApaG domain
FYA99_RS21135	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FYA99_RS21140	COG0546	phosphoglycolate phosphatase activity
FYA99_RS21150	COG0512	Glutamine amidotransferase of anthranilate synthase
FYA99_RS21165	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS21185	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FYA99_RS21195	COG1607	acyl-coa hydrolase
FYA99_RS21250	COG1802	Transcriptional regulator
FYA99_RS21280	COG1595	DNA-templated transcription, initiation
FYA99_RS21295	COG3720	iron ion transport
FYA99_RS21300	COG4558	Periplasmic binding protein
FYA99_RS21305	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYA99_RS21315	COG1683	Conserved Protein
FYA99_RS21345	COG3064	Membrane
FYA99_RS21350	COG0583	DNA-binding transcription factor activity
FYA99_RS21360	COG1234	tRNA 3'-trailer cleavage
FYA99_RS21370	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FYA99_RS21375	COG1802	Transcriptional regulator
FYA99_RS21385	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYA99_RS21405	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS21425	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS21430	COG0583	DNA-binding transcription factor activity
FYA99_RS21440	COG1522	sequence-specific DNA binding
FYA99_RS21445	COG0183	Belongs to the thiolase family
FYA99_RS21505	COG2814	Major facilitator Superfamily
FYA99_RS21530	COG1999	signal sequence binding
FYA99_RS21575	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYA99_RS21595	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FYA99_RS21605	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FYA99_RS21615	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
FYA99_RS21620	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
FYA99_RS21630	COG0070	glutamate synthase
FYA99_RS21630	COG0069	glutamate synthase activity
FYA99_RS21630	COG0067	glutamate synthase
FYA99_RS21640	COG3047	cAMP biosynthetic process
FYA99_RS21650	COG1127	ABC transporter
FYA99_RS21655	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FYA99_RS21660	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FYA99_RS21665	COG2853	Lipoprotein
FYA99_RS21675	COG1131	(ABC) transporter
FYA99_RS21680	COG0842	Transport permease protein
FYA99_RS21700	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FYA99_RS21710	COG0131	Imidazoleglycerol-phosphate dehydratase
FYA99_RS21720	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
FYA99_RS21735	COG0140	phosphoribosyl-ATP diphosphatase activity
FYA99_RS21740	COG0537	adenosine 5'-monophosphoramidase activity
FYA99_RS21745	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FYA99_RS21770	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FYA99_RS21780	COG0723	plastoquinol--plastocyanin reductase activity
FYA99_RS21785	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FYA99_RS21790	COG2857	Cytochrome c1
FYA99_RS21795	COG0625	glutathione transferase activity
FYA99_RS21800	COG2969	positive regulation of protein catabolic process
FYA99_RS21830	COG0583	DNA-binding transcription factor activity
FYA99_RS21835	COG0492	ferredoxin-NADP+ reductase activity
FYA99_RS21855	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS21865	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYA99_RS21885	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS21920	COG3702	type iv secretory pathway
FYA99_RS21940	COG3736	Type IV secretory pathway, component VirB8
FYA99_RS21955	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
FYA99_RS21965	COG0697	spore germination
FYA99_RS21985	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
FYA99_RS21990	COG0747	negative chemotaxis
FYA99_RS21995	COG0601	transmembrane transport
FYA99_RS22000	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYA99_RS22010	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
FYA99_RS22020	COG0513	Belongs to the DEAD box helicase family
FYA99_RS22025	COG1280	lysine exporter protein (LysE YggA)
FYA99_RS22050	COG0583	DNA-binding transcription factor activity
FYA99_RS22060	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FYA99_RS22070	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYA99_RS22075	COG0154	amidase activity
FYA99_RS22080	COG1609	Transcriptional regulator
FYA99_RS22100	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FYA99_RS22105	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FYA99_RS22110	COG3842	ATPase activity
FYA99_RS22115	COG1653	transport
FYA99_RS22120	COG1175	transmembrane transport
FYA99_RS22125	COG0395	ABC-type sugar transport system, permease component
FYA99_RS22160	COG1280	lysine exporter protein (LysE YggA)
FYA99_RS22175	COG1960	acyl-CoA dehydrogenase activity
FYA99_RS22185	COG0183	Belongs to the thiolase family
FYA99_RS22190	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FYA99_RS22210	COG3181	Tripartite tricarboxylate transporter family receptor
FYA99_RS22220	COG2358	TRAP transporter, solute receptor (TAXI family
FYA99_RS22235	COG2922	Belongs to the Smg family
FYA99_RS22260	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYA99_RS22265	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS22270	COG1028	Short-chain dehydrogenase reductase Sdr
FYA99_RS22275	COG1012	belongs to the aldehyde dehydrogenase family
FYA99_RS22285	COG0028	Belongs to the TPP enzyme family
FYA99_RS22290	COG1522	sequence-specific DNA binding
FYA99_RS22295	COG3781	membrane
FYA99_RS22325	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FYA99_RS22350	COG1304	FMN binding
FYA99_RS22370	COG1414	Transcriptional regulator
FYA99_RS22385	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
FYA99_RS22390	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FYA99_RS22395	COG0594	ribonuclease P activity
FYA99_RS22400	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
FYA99_RS22410	COG0753	catalase activity
FYA99_RS22415	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYA99_RS22420	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYA99_RS22430	COG2175	clavaminate synthase activity
FYA99_RS22435	COG1473	amidohydrolase
FYA99_RS22440	COG4608	Belongs to the ABC transporter superfamily
FYA99_RS22445	COG0444	Belongs to the ABC transporter superfamily
FYA99_RS22455	COG0601	transmembrane transport
FYA99_RS22460	COG0747	negative chemotaxis
FYA99_RS22500	COG0436	Aminotransferase
FYA99_RS22505	COG1278	Cold shock