locus-tag	class	description
FYB40_RS00005	COG0154	amidase activity
FYB40_RS00050	COG1530	ribonuclease E activity
FYB40_RS00055	COG0077	Prephenate dehydratase
FYB40_RS00070	COG1132	(ABC) transporter
FYB40_RS00075	COG0859	PFAM glycosyl transferase family 9
FYB40_RS00100	COG2194	sulfuric ester hydrolase activity
FYB40_RS00105	COG0438	transferase activity, transferring glycosyl groups
FYB40_RS00110	COG0463	Glycosyl transferase, family 2
FYB40_RS00115	COG0726	polysaccharide deacetylase
FYB40_RS00120	COG0438	transferase activity, transferring glycosyl groups
FYB40_RS00135	COG1643	Atp-dependent helicase
FYB40_RS00140	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FYB40_RS00140	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
FYB40_RS00145	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
FYB40_RS00155	COG0704	Plays a role in the regulation of phosphate uptake
FYB40_RS00165	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS00190	COG1177	transmembrane transport
FYB40_RS00195	COG1176	ABC-type spermidine putrescine transport system, permease component I
FYB40_RS00200	COG3842	ATPase activity
FYB40_RS00205	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FYB40_RS00220	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
FYB40_RS00225	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB40_RS00235	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB40_RS00235	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB40_RS00240	COG3539	Fimbrial protein
FYB40_RS00245	COG3539	Fimbrial protein
FYB40_RS00260	COG2050	protein possibly involved in aromatic compounds catabolism
FYB40_RS00275	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYB40_RS00280	COG2151	metal-sulfur cluster biosynthetic enzyme
FYB40_RS00285	COG3396	Phenylacetate-CoA oxygenase
FYB40_RS00290	COG3460	Phenylacetate-CoA oxygenase
FYB40_RS00295	COG3396	Phenylacetate-CoA oxygenase
FYB40_RS00310	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
FYB40_RS00315	COG0501	Belongs to the peptidase M48B family
FYB40_RS00320	COG1162	GTPase activity
FYB40_RS00325	COG0667	Aldo Keto reductase
FYB40_RS00335	COG0335	large ribosomal subunit rRNA binding
FYB40_RS00365	COG0175	sulfate reduction
FYB40_RS00375	COG4208	sulfate ABC transporter
FYB40_RS00395	COG0602	queuosine metabolic process
FYB40_RS00400	COG0720	synthase
FYB40_RS00405	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB40_RS00410	COG0235	Class ii aldolase
FYB40_RS00435	COG1566	PFAM secretion protein HlyD family protein
FYB40_RS00445	COG0400	carboxylic ester hydrolase activity
FYB40_RS00470	COG1959	2 iron, 2 sulfur cluster binding
FYB40_RS00510	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FYB40_RS00525	COG0667	Aldo Keto reductase
FYB40_RS00535	COG5265	(ABC) transporter
FYB40_RS00570	COG3468	outer membrane autotransporter barrel domain protein
FYB40_RS00575	COG3468	outer membrane autotransporter barrel domain protein
FYB40_RS00600	COG0840	transmembrane signaling receptor activity
FYB40_RS00605	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FYB40_RS00610	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FYB40_RS00640	COG0583	DNA-binding transcription factor activity
FYB40_RS00650	COG2814	Major facilitator Superfamily
FYB40_RS00680	COG2084	Dehydrogenase
FYB40_RS00685	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS00695	COG1253	flavin adenine dinucleotide binding
FYB40_RS00710	COG2988	succinylglutamate desuccinylase activity
FYB40_RS00735	COG0861	Integral membrane protein TerC family
FYB40_RS00745	COG1595	DNA-templated transcription, initiation
FYB40_RS00775	COG3189	MarR family transcriptional regulator
FYB40_RS00805	COG0028	Belongs to the TPP enzyme family
FYB40_RS00815	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS00820	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FYB40_RS00830	COG1126	abc transporter atp-binding protein
FYB40_RS00855	COG0084	hydrolase, TatD family'
FYB40_RS00860	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FYB40_RS00865	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FYB40_RS00870	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FYB40_RS00895	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FYB40_RS00900	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS00910	COG2867	negative regulation of translational initiation
FYB40_RS00925	COG0330	HflC and HflK could
FYB40_RS00950	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYB40_RS00955	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FYB40_RS00980	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
FYB40_RS00985	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYB40_RS00990	COG0750	zinc metalloprotease
FYB40_RS01005	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FYB40_RS01010	COG0233	cytoplasmic translational termination
FYB40_RS01025	COG0052	Belongs to the universal ribosomal protein uS2 family
FYB40_RS01030	COG0024	Methionine aminopeptidase
FYB40_RS01065	COG0285	dihydrofolate synthase activity
FYB40_RS01095	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FYB40_RS01105	COG1677	Flagellar hook-basal body complex protein FliE
FYB40_RS01115	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FYB40_RS01120	COG1317	bacterial-type flagellum organization
FYB40_RS01125	COG1157	protein secretion by the type III secretion system
FYB40_RS01140	COG1580	Controls the rotational direction of flagella during chemotaxis
FYB40_RS01160	COG1338	Plays a role in the flagellum-specific transport system
FYB40_RS01180	COG0840	transmembrane signaling receptor activity
FYB40_RS01190	COG1256	bacterial-type flagellum assembly
FYB40_RS01220	COG1749	Flagellar hook protein flgE
FYB40_RS01230	COG1558	bacterial-type flagellum-dependent cell motility
FYB40_RS01235	COG1815	bacterial-type flagellum-dependent cell motility
FYB40_RS01270	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
FYB40_RS01275	COG0745	RESPONSE REGULATOR receiver
FYB40_RS01285	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FYB40_RS01290	COG0840	transmembrane signaling receptor activity
FYB40_RS01300	COG2198	Histidine kinase
FYB40_RS01300	COG0643	Histidine kinase
FYB40_RS01305	COG0745	RESPONSE REGULATOR receiver
FYB40_RS01335	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FYB40_RS01340	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYB40_RS01345	COG0508	dehydrogenase complex catalyzes the overall conversion of
FYB40_RS01350	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
FYB40_RS01360	COG4566	intracellular signal transduction
FYB40_RS01365	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
FYB40_RS01370	COG0339	signal peptide processing
FYB40_RS01375	COG1999	signal sequence binding
FYB40_RS01395	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB40_RS01405	COG1187	pseudouridine synthase activity
FYB40_RS01410	COG3161	chorismate lyase activity
FYB40_RS01425	COG1280	lysine exporter protein (LysE YggA)
FYB40_RS01435	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS01440	COG0601	transmembrane transport
FYB40_RS01445	COG0747	negative chemotaxis
FYB40_RS01495	COG0668	transmembrane transport
FYB40_RS01500	COG0165	Argininosuccinate lyase
FYB40_RS01510	COG0789	Transcriptional regulator
FYB40_RS01520	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB40_RS01525	COG0765	amino acid transport
FYB40_RS01530	COG1126	abc transporter atp-binding protein
FYB40_RS01540	COG2346	COG2346, Truncated hemoglobins
FYB40_RS01600	COG1335	isochorismatase
FYB40_RS01605	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB40_RS01625	COG2837	iron assimilation
FYB40_RS01655	COG4691	Plasmid stability protein
FYB40_RS01690	COG0583	DNA-binding transcription factor activity
FYB40_RS01695	COG2814	Major facilitator Superfamily
FYB40_RS01705	COG0501	Belongs to the peptidase M48B family
FYB40_RS01715	COG0583	DNA-binding transcription factor activity
FYB40_RS01725	COG2188	Transcriptional regulator
FYB40_RS01740	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FYB40_RS01750	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS01755	COG0129	dihydroxy-acid dehydratase activity
FYB40_RS01770	COG0129	dihydroxy-acid dehydratase activity
FYB40_RS01780	COG3622	Belongs to the hyi family
FYB40_RS01785	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYB40_RS01790	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB40_RS01805	COG0583	DNA-binding transcription factor activity
FYB40_RS01810	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB40_RS01815	COG3246	L-lysine catabolic process to acetate
FYB40_RS01850	COG0697	spore germination
FYB40_RS01865	COG0625	glutathione transferase activity
FYB40_RS01885	COG1280	lysine exporter protein (LysE YggA)
FYB40_RS01890	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYB40_RS01925	COG2207	Transcriptional regulator
FYB40_RS01965	COG1132	(ABC) transporter
FYB40_RS01990	COG0659	secondary active sulfate transmembrane transporter activity
FYB40_RS02025	COG5507	3-demethylubiquinone-9 3-methyltransferase
FYB40_RS02030	COG0384	phenazine biosynthesis protein PhzF
FYB40_RS02035	COG0583	DNA-binding transcription factor activity
FYB40_RS02040	COG2733	membrane
FYB40_RS02055	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS02060	COG3284	Transcriptional regulator
FYB40_RS02065	COG0656	L-ascorbic acid biosynthetic process
FYB40_RS02110	COG1802	Transcriptional regulator
FYB40_RS02130	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS02135	COG2188	Transcriptional regulator
FYB40_RS02160	COG0789	Transcriptional regulator
FYB40_RS02175	COG1609	Transcriptional regulator
FYB40_RS02180	COG4172	Belongs to the ABC transporter superfamily
FYB40_RS02190	COG0601	transmembrane transport
FYB40_RS02195	COG0747	negative chemotaxis
FYB40_RS02210	COG1280	lysine exporter protein (LysE YggA)
FYB40_RS02245	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS02250	COG2079	MmgE PrpD family protein
FYB40_RS02270	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS02285	COG3618	amidohydrolase
FYB40_RS02300	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
FYB40_RS02315	COG0625	glutathione transferase activity
FYB40_RS02330	COG2814	Major facilitator Superfamily
FYB40_RS02335	COG0477	Major facilitator Superfamily
FYB40_RS02355	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FYB40_RS02360	COG1061	Type III restriction enzyme res subunit
FYB40_RS02400	COG2197	response regulator
FYB40_RS02405	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
FYB40_RS02425	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB40_RS02445	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS02470	COG0047	phosphoribosylformylglycinamidine synthase activity
FYB40_RS02470	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FYB40_RS02475	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB40_RS02480	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB40_RS02480	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB40_RS02495	COG0613	PHP domain protein
FYB40_RS02530	COG0450	alkyl hydroperoxide reductase
FYB40_RS02535	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS02550	COG0123	including yeast histone deacetylase and acetoin utilization protein
FYB40_RS02555	COG2951	lytic endotransglycosylase activity
FYB40_RS02575	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
FYB40_RS02580	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
FYB40_RS02610	COG0287	Prephenate dehydrogenase
FYB40_RS02645	COG2814	Major facilitator Superfamily
FYB40_RS02715	COG0583	DNA-binding transcription factor activity
FYB40_RS02730	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB40_RS02755	COG1053	succinate dehydrogenase
FYB40_RS02760	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS02765	COG2079	MmgE PrpD family protein
FYB40_RS02775	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS02800	COG0028	Belongs to the TPP enzyme family
FYB40_RS02800	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
FYB40_RS02805	COG0436	Aminotransferase
FYB40_RS02825	COG0778	Nitroreductase
FYB40_RS02830	COG2814	Major facilitator Superfamily
FYB40_RS02835	COG3706	GGDEF domain
FYB40_RS02840	COG0589	response to stress
FYB40_RS02850	COG2951	lytic endotransglycosylase activity
FYB40_RS02855	COG2833	Protein of unknown function (DUF455)
FYB40_RS02870	COG1132	(ABC) transporter
FYB40_RS02880	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FYB40_RS02880	COG1181	Belongs to the D-alanine--D-alanine ligase family
FYB40_RS02885	COG3237	CsbD-like
FYB40_RS02895	COG2823	Periplasmic or secreted lipoprotein
FYB40_RS02915	COG0672	)-iron permease
FYB40_RS02930	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
FYB40_RS02935	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS02940	COG3243	poly(R)-hydroxyalkanoic acid synthase
FYB40_RS02950	COG0564	pseudouridine synthase activity
FYB40_RS02960	COG1199	ATP-dependent helicase activity
FYB40_RS02965	COG2183	response to ionizing radiation
FYB40_RS02990	COG4774	siderophore transport
FYB40_RS03000	COG1595	DNA-templated transcription, initiation
FYB40_RS03005	COG2175	clavaminate synthase activity
FYB40_RS03015	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS03020	COG0583	DNA-binding transcription factor activity
FYB40_RS03025	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS03030	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
FYB40_RS03035	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYB40_RS03040	COG0508	dehydrogenase complex catalyzes the overall conversion of
FYB40_RS03055	COG1522	sequence-specific DNA binding
FYB40_RS03070	COG3539	Fimbrial protein
FYB40_RS03085	COG0372	Belongs to the citrate synthase family
FYB40_RS03090	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
FYB40_RS03095	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FYB40_RS03100	COG1053	succinate dehydrogenase
FYB40_RS03105	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
FYB40_RS03110	COG2009	succinate dehydrogenase
FYB40_RS03115	COG2188	Transcriptional regulator
FYB40_RS03120	COG0039	L-malate dehydrogenase activity
FYB40_RS03140	COG2828	Protein conserved in bacteria
FYB40_RS03150	COG1981	membrane
FYB40_RS03175	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB40_RS03185	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
FYB40_RS03220	COG0148	phosphopyruvate hydratase activity
FYB40_RS03230	COG2877	3-deoxy-8-phosphooctulonate synthase activity
FYB40_RS03235	COG0504	CTP synthase activity
FYB40_RS03255	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS03265	COG0747	negative chemotaxis
FYB40_RS03270	COG4172	Belongs to the ABC transporter superfamily
FYB40_RS03275	COG1446	asparaginase
FYB40_RS03305	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FYB40_RS03320	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
FYB40_RS03325	COG0697	spore germination
FYB40_RS03330	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB40_RS03340	COG3193	protein, possibly involved in utilization of glycolate and propanediol
FYB40_RS03345	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB40_RS03350	COG0791	NLP P60 protein
FYB40_RS03360	COG0583	DNA-binding transcription factor activity
FYB40_RS03375	COG0583	DNA-binding transcription factor activity
FYB40_RS03400	COG0670	Belongs to the BI1 family
FYB40_RS03405	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS03415	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FYB40_RS03425	COG1381	Involved in DNA repair and RecF pathway recombination
FYB40_RS03430	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FYB40_RS03435	COG0571	ribonuclease III activity
FYB40_RS03440	COG0681	Belongs to the peptidase S26 family
FYB40_RS03450	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FYB40_RS03475	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FYB40_RS03480	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FYB40_RS03505	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FYB40_RS03510	COG1399	metal-binding, possibly nucleic acid-binding protein
FYB40_RS03525	COG3023	N-Acetylmuramoyl-L-alanine amidase
FYB40_RS03535	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FYB40_RS03540	COG0546	phosphoglycolate phosphatase activity
FYB40_RS03550	COG1530	ribonuclease E activity
FYB40_RS03560	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FYB40_RS03565	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
FYB40_RS03590	COG3228	Belongs to the MtfA family
FYB40_RS03600	COG0251	oxidation-reduction process
FYB40_RS03610	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
FYB40_RS03625	COG2878	Part of a membrane complex involved in electron transport
FYB40_RS03630	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FYB40_RS03665	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FYB40_RS03690	COG1268	BioY protein
FYB40_RS03695	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FYB40_RS03700	COG1122	ATPase activity
FYB40_RS03705	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FYB40_RS03715	COG0271	Belongs to the BolA IbaG family
FYB40_RS03720	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYB40_RS03735	COG1196	nuclear chromosome segregation
FYB40_RS03745	COG1573	uracil-dna glycosylase
FYB40_RS03750	COG1214	PFAM Peptidase M22, glycoprotease
FYB40_RS03765	COG0450	alkyl hydroperoxide reductase
FYB40_RS03770	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB40_RS03785	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
FYB40_RS03795	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FYB40_RS03800	COG0560	Phosphoserine phosphatase
FYB40_RS03805	COG0583	DNA-binding transcription factor activity
FYB40_RS03810	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS03815	COG0028	Belongs to the TPP enzyme family
FYB40_RS03840	COG4774	siderophore transport
FYB40_RS03850	COG1007	ATP synthesis coupled electron transport
FYB40_RS03865	COG0713	ATP synthesis coupled electron transport
FYB40_RS03875	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYB40_RS03880	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
FYB40_RS03885	COG1034	ATP synthesis coupled electron transport
FYB40_RS03895	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
FYB40_RS03910	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYB40_RS03915	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYB40_RS03920	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB40_RS03940	COG0671	phosphoesterase, PA-phosphatase related
FYB40_RS03950	COG1597	lipid kinase activity
FYB40_RS03955	COG0583	DNA-binding transcription factor activity
FYB40_RS03960	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FYB40_RS03965	COG1733	regulation of RNA biosynthetic process
FYB40_RS03970	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB40_RS03990	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
FYB40_RS04010	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB40_RS04030	COG3608	succinylglutamate desuccinylase aspartoacylase
FYB40_RS04035	COG0626	cystathionine gamma-synthase activity
FYB40_RS04040	COG0583	DNA-binding transcription factor activity
FYB40_RS04050	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS04055	COG0165	Argininosuccinate lyase
FYB40_RS04070	COG3799	methylaspartate ammonia-lyase activity
FYB40_RS04080	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FYB40_RS04090	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FYB40_RS04095	COG0149	triose-phosphate isomerase activity
FYB40_RS04115	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB40_RS04125	COG1185	polyribonucleotide nucleotidyltransferase activity
FYB40_RS04130	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
FYB40_RS04145	COG1183	phosphatidylcholine synthase activity
FYB40_RS04155	COG0440	acetolactate synthase activity
FYB40_RS04160	COG0028	Belongs to the TPP enzyme family
FYB40_RS04165	COG1289	transmembrane transporter activity
FYB40_RS04175	COG3022	response to hydroperoxide
FYB40_RS04180	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS04195	COG3486	L-lysine 6-monooxygenase (NADPH) activity
FYB40_RS04225	COG2814	Major facilitator Superfamily
FYB40_RS04245	COG3706	GGDEF domain
FYB40_RS04285	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FYB40_RS04295	COG1674	ftsk spoiiie
FYB40_RS04300	COG0492	ferredoxin-NADP+ reductase activity
FYB40_RS04305	COG1193	negative regulation of DNA recombination
FYB40_RS04315	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FYB40_RS04335	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
FYB40_RS04340	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
FYB40_RS04345	COG2205	protein histidine kinase activity
FYB40_RS04350	COG0745	RESPONSE REGULATOR receiver
FYB40_RS04385	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FYB40_RS04405	COG0612	Peptidase, M16
FYB40_RS04425	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
FYB40_RS04440	COG1420	regulation of RNA biosynthetic process
FYB40_RS04450	COG0497	DNA recombination
FYB40_RS04460	COG0735	belongs to the Fur family
FYB40_RS04465	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYB40_RS04510	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYB40_RS04510	COG0404	The glycine cleavage system catalyzes the degradation of glycine
FYB40_RS04515	COG4311	Sarcosine oxidase, delta subunit
FYB40_RS04520	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB40_RS04530	COG0583	DNA-binding transcription factor activity
FYB40_RS04550	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS04555	COG2030	dehydratase
FYB40_RS04565	COG1024	Enoyl-CoA hydratase
FYB40_RS04590	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB40_RS04600	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB40_RS04600	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB40_RS04615	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYB40_RS04630	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB40_RS04640	COG0405	Gamma-glutamyltransferase
FYB40_RS04655	COG1280	lysine exporter protein (LysE YggA)
FYB40_RS04685	COG0583	DNA-binding transcription factor activity
FYB40_RS04725	COG1414	Transcriptional regulator
FYB40_RS04730	COG1058	Belongs to the CinA family
FYB40_RS04730	COG1546	Belongs to the CinA family
FYB40_RS04745	COG0513	Belongs to the DEAD box helicase family
FYB40_RS04775	COG0429	hydrolase of the alpha beta-hydrolase fold
FYB40_RS04780	COG4783	chaperone-mediated protein folding
FYB40_RS04795	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB40_RS04810	COG0006	proline dipeptidase activity
FYB40_RS04820	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYB40_RS04865	COG0514	ATP-dependent DNA helicase (RecQ)
FYB40_RS04890	COG1271	oxidase subunit
FYB40_RS04905	COG2894	cell division
FYB40_RS04910	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
FYB40_RS04925	COG0488	(ABC) transporter
FYB40_RS04950	COG4608	Belongs to the ABC transporter superfamily
FYB40_RS04955	COG0444	Belongs to the ABC transporter superfamily
FYB40_RS04960	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS04965	COG0601	transmembrane transport
FYB40_RS04975	COG1215	transferase activity, transferring glycosyl groups
FYB40_RS04990	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FYB40_RS05000	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FYB40_RS05015	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS05020	COG2188	Transcriptional regulator
FYB40_RS05025	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FYB40_RS05030	COG2814	Major facilitator Superfamily
FYB40_RS05040	COG0259	pyridoxamine-phosphate oxidase activity
FYB40_RS05045	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FYB40_RS05060	COG0583	DNA-binding transcription factor activity
FYB40_RS05065	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS05075	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS05080	COG0405	Gamma-glutamyltransferase
FYB40_RS05090	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS05105	COG0802	atpase or kinase
FYB40_RS05110	COG0860	N-Acetylmuramoyl-L-alanine amidase
FYB40_RS05115	COG0586	Pfam SNARE associated Golgi protein
FYB40_RS05145	COG0617	tRNA 3'-terminal CCA addition
FYB40_RS05170	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB40_RS05175	COG2188	Transcriptional regulator
FYB40_RS05185	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB40_RS05190	COG1234	tRNA 3'-trailer cleavage
FYB40_RS05195	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS05210	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS05215	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYB40_RS05220	COG2301	Belongs to the HpcH HpaI aldolase family
FYB40_RS05225	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS05230	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
FYB40_RS05240	COG1024	Enoyl-CoA hydratase
FYB40_RS05250	COG2188	Transcriptional regulator
FYB40_RS05255	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FYB40_RS05260	COG0066	3-isopropylmalate dehydratase activity
FYB40_RS05275	COG0752	glycyl-tRNA synthetase alpha subunit
FYB40_RS05280	COG0751	glycine-tRNA ligase activity
FYB40_RS05285	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FYB40_RS05290	COG0204	Acyl-transferase
FYB40_RS05305	COG0242	peptide deformylase activity
FYB40_RS05310	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS05315	COG0700	Nucleoside recognition
FYB40_RS05320	COG0469	pyruvate kinase activity
FYB40_RS05350	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FYB40_RS05360	COG2154	pterin-4-alpha-carbinolamine dehydratase
FYB40_RS05380	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB40_RS05385	COG0154	amidase activity
FYB40_RS05395	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS05405	COG0747	negative chemotaxis
FYB40_RS05420	COG0019	diaminopimelate decarboxylase activity
FYB40_RS05435	COG3712	iron ion homeostasis
FYB40_RS05440	COG4774	siderophore transport
FYB40_RS05445	COG2353	YceI-like domain
FYB40_RS05450	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYB40_RS05465	COG0583	DNA-binding transcription factor activity
FYB40_RS05485	COG3384	dioxygenase
FYB40_RS05490	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB40_RS05525	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS05530	COG1309	transcriptional regulator
FYB40_RS05535	COG2982	Protein involved in outer membrane biogenesis
FYB40_RS05540	COG2818	Glycosylase
FYB40_RS05560	COG1653	transport
FYB40_RS05565	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYB40_RS05570	COG3842	ATPase activity
FYB40_RS05575	COG0395	ABC-type sugar transport system, permease component
FYB40_RS05600	COG2186	Transcriptional regulator
FYB40_RS05620	COG1454	alcohol dehydrogenase
FYB40_RS05635	COG2011	ABC-type metal ion transport system permease component
FYB40_RS05640	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FYB40_RS05645	COG1501	Belongs to the glycosyl hydrolase 31 family
FYB40_RS05660	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS05665	COG1473	amidohydrolase
FYB40_RS05675	COG2855	membrane
FYB40_RS05685	COG2239	Acts as a magnesium transporter
FYB40_RS05700	COG1522	sequence-specific DNA binding
FYB40_RS05705	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB40_RS05710	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS05735	COG0739	heme binding
FYB40_RS05745	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
FYB40_RS05750	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FYB40_RS05760	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FYB40_RS05790	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FYB40_RS05795	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FYB40_RS05805	COG3116	cell division
FYB40_RS05815	COG2001	Belongs to the MraZ family
FYB40_RS05825	COG0488	(ABC) transporter
FYB40_RS05830	COG0418	dihydroorotase activity
FYB40_RS05835	COG1473	amidohydrolase
FYB40_RS05885	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FYB40_RS05890	COG4654	Cytochrome c, class I
FYB40_RS05945	COG2084	Dehydrogenase
FYB40_RS05990	COG0824	Thioesterase
FYB40_RS05995	COG0811	peptide transport
FYB40_RS06000	COG0848	biopolymer transport protein
FYB40_RS06025	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYB40_RS06030	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
FYB40_RS06035	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS06050	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB40_RS06075	COG0183	Belongs to the thiolase family
FYB40_RS06085	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS06090	COG0583	DNA-binding transcription factor activity
FYB40_RS06095	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS06100	COG1024	Enoyl-CoA hydratase
FYB40_RS06110	COG1253	flavin adenine dinucleotide binding
FYB40_RS06115	COG1285	pathogenesis
FYB40_RS06140	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB40_RS06145	COG0697	spore germination
FYB40_RS06180	COG0463	Glycosyl transferase, family 2
FYB40_RS06190	COG0786	glutamate:sodium symporter activity
FYB40_RS06200	COG2031	fatty acid transporter
FYB40_RS06215	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FYB40_RS06220	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FYB40_RS06230	COG0328	RNA-DNA hybrid ribonuclease activity
FYB40_RS06235	COG2226	methyltransferase
FYB40_RS06240	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FYB40_RS06260	COG2979	Protein of unknown function (DUF533)
FYB40_RS06280	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS06295	COG3119	arylsulfatase activity
FYB40_RS06320	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
FYB40_RS06340	COG0832	Belongs to the urease beta subunit family
FYB40_RS06350	COG0831	urea catabolic process
FYB40_RS06355	COG0829	nickel cation binding
FYB40_RS06370	COG0633	Ferredoxin
FYB40_RS06385	COG2188	Transcriptional regulator
FYB40_RS06390	COG3799	methylaspartate ammonia-lyase activity
FYB40_RS06410	COG2719	SpoVR family
FYB40_RS06415	COG2718	Belongs to the UPF0229 family
FYB40_RS06420	COG2766	serine protein kinase
FYB40_RS06425	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FYB40_RS06425	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FYB40_RS06435	COG4977	sequence-specific DNA binding
FYB40_RS06440	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
FYB40_RS06470	COG0316	Belongs to the HesB IscA family
FYB40_RS06490	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
FYB40_RS06495	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB40_RS06500	COG0312	modulator of DNA gyrase
FYB40_RS06520	COG1116	anion transmembrane transporter activity
FYB40_RS06525	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS06530	COG1335	isochorismatase
FYB40_RS06535	COG0346	lactoylglutathione lyase activity
FYB40_RS06540	COG0513	Belongs to the DEAD box helicase family
FYB40_RS06550	COG1802	Transcriptional regulator
FYB40_RS06555	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FYB40_RS06555	COG0045	succinate-CoA ligase (ADP-forming) activity
FYB40_RS06555	COG1042	CoA-binding domain protein
FYB40_RS06575	COG1522	sequence-specific DNA binding
FYB40_RS06605	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FYB40_RS06610	COG1696	Membrane protein involved in D-alanine export
FYB40_RS06635	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYB40_RS06650	COG0439	Biotin carboxylase
FYB40_RS06655	COG0511	ligase activity, forming carbon-carbon bonds
FYB40_RS06660	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
FYB40_RS06665	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB40_RS06670	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FYB40_RS06675	COG3150	esterase
FYB40_RS06680	COG0557	exoribonuclease II activity
FYB40_RS06695	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FYB40_RS06730	COG1678	Uncharacterized ACR, COG1678
FYB40_RS06745	COG0352	thiamine-phosphate diphosphorylase activity
FYB40_RS06775	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS06785	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS06845	COG0494	nUDIX hydrolase
FYB40_RS06870	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
FYB40_RS06895	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
FYB40_RS06900	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
FYB40_RS06930	COG1126	abc transporter atp-binding protein
FYB40_RS06935	COG0765	amino acid transport
FYB40_RS06940	COG4597	amino acid ABC transporter
FYB40_RS06945	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB40_RS06950	COG2884	Cell division ATP-binding protein ftsE
FYB40_RS06955	COG2177	Part of the ABC transporter FtsEX involved in
FYB40_RS06970	COG1194	a g-specific adenine glycosylase
FYB40_RS06990	COG4206	TonB-dependent receptor
FYB40_RS06995	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FYB40_RS07005	COG0351	phosphomethylpyrimidine kinase
FYB40_RS07010	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
FYB40_RS07020	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
FYB40_RS07030	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
FYB40_RS07045	COG2226	methyltransferase
FYB40_RS07050	COG0745	RESPONSE REGULATOR receiver
FYB40_RS07055	COG5002	protein histidine kinase activity
FYB40_RS07065	COG5002	protein histidine kinase activity
FYB40_RS07075	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB40_RS07080	COG0583	DNA-binding transcription factor activity
FYB40_RS07090	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FYB40_RS07095	COG1984	allophanate hydrolase subunit 2
FYB40_RS07110	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS07120	COG1024	Enoyl-CoA hydratase
FYB40_RS07135	COG1802	Transcriptional regulator
FYB40_RS07145	COG1238	metal cluster binding
FYB40_RS07150	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB40_RS07155	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB40_RS07175	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FYB40_RS07190	COG1294	oxidase, subunit
FYB40_RS07215	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
FYB40_RS07230	COG1137	ATPase activity
FYB40_RS07235	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FYB40_RS07250	COG2010	Cytochrome c
FYB40_RS07250	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYB40_RS07260	COG1660	Displays ATPase and GTPase activities
FYB40_RS07270	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FYB40_RS07285	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
FYB40_RS07290	COG2823	Periplasmic or secreted lipoprotein
FYB40_RS07320	COG0471	metal ion transport
FYB40_RS07325	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYB40_RS07330	COG0772	Belongs to the SEDS family
FYB40_RS07335	COG0768	penicillin binding
FYB40_RS07345	COG1792	Involved in formation and maintenance of cell shape
FYB40_RS07350	COG1077	Cell shape determining protein MreB Mrl
FYB40_RS07375	COG0708	Exodeoxyribonuclease III
FYB40_RS07385	COG2860	membrane
FYB40_RS07395	COG0583	DNA-binding transcription factor activity
FYB40_RS07400	COG0473	3-isopropylmalate dehydrogenase activity
FYB40_RS07425	COG0583	DNA-binding transcription factor activity
FYB40_RS07430	COG2515	1-aminocyclopropane-1-carboxylate deaminase
FYB40_RS07435	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB40_RS07440	COG0765	amino acid transport
FYB40_RS07445	COG0765	amino acid transport
FYB40_RS07450	COG1126	abc transporter atp-binding protein
FYB40_RS07455	COG1794	racemase activity, acting on amino acids and derivatives
FYB40_RS07460	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB40_RS07465	COG2223	nitrite transmembrane transporter activity
FYB40_RS07470	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYB40_RS07470	COG2813	Specifically methylates the guanine in position
FYB40_RS07480	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYB40_RS07525	COG0583	DNA-binding transcription factor activity
FYB40_RS07530	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
FYB40_RS07535	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB40_RS07570	COG0154	amidase activity
FYB40_RS07580	COG1414	Transcriptional regulator
FYB40_RS07590	COG1024	Enoyl-CoA hydratase
FYB40_RS07590	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB40_RS07600	COG2132	Multicopper oxidase
FYB40_RS07645	COG1024	Enoyl-CoA hydratase
FYB40_RS07650	COG1024	Enoyl-CoA hydratase
FYB40_RS07655	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FYB40_RS07665	COG0747	negative chemotaxis
FYB40_RS07675	COG0601	transmembrane transport
FYB40_RS07680	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS07685	COG0444	Belongs to the ABC transporter superfamily
FYB40_RS07690	COG4608	Belongs to the ABC transporter superfamily
FYB40_RS07700	COG2195	Cleaves the N-terminal amino acid of tripeptides
FYB40_RS07705	COG0210	DNA helicase
FYB40_RS07710	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FYB40_RS07725	COG0355	proton-transporting ATP synthase activity, rotational mechanism
FYB40_RS07745	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FYB40_RS07760	COG0356	it plays a direct role in the translocation of protons across the membrane
FYB40_RS07775	COG1024	Enoyl-CoA hydratase
FYB40_RS07800	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB40_RS07810	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYB40_RS07815	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
FYB40_RS07820	COG2967	ApaG domain
FYB40_RS07825	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FYB40_RS07830	COG0546	phosphoglycolate phosphatase activity
FYB40_RS07840	COG0512	Glutamine amidotransferase of anthranilate synthase
FYB40_RS07855	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS07875	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FYB40_RS07885	COG1607	acyl-coa hydrolase
FYB40_RS07940	COG1802	Transcriptional regulator
FYB40_RS07970	COG1595	DNA-templated transcription, initiation
FYB40_RS07985	COG3720	iron ion transport
FYB40_RS07990	COG4558	Periplasmic binding protein
FYB40_RS07995	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYB40_RS08005	COG1683	Conserved Protein
FYB40_RS08035	COG3064	Membrane
FYB40_RS08040	COG0583	DNA-binding transcription factor activity
FYB40_RS08050	COG1234	tRNA 3'-trailer cleavage
FYB40_RS08060	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FYB40_RS08065	COG1802	Transcriptional regulator
FYB40_RS08075	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB40_RS08095	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS08115	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS08120	COG0583	DNA-binding transcription factor activity
FYB40_RS08130	COG1522	sequence-specific DNA binding
FYB40_RS08135	COG0183	Belongs to the thiolase family
FYB40_RS08195	COG2814	Major facilitator Superfamily
FYB40_RS08220	COG1999	signal sequence binding
FYB40_RS08265	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB40_RS08285	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FYB40_RS08295	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FYB40_RS08305	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
FYB40_RS08310	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
FYB40_RS08320	COG0070	glutamate synthase
FYB40_RS08320	COG0069	glutamate synthase activity
FYB40_RS08320	COG0067	glutamate synthase
FYB40_RS08330	COG3047	cAMP biosynthetic process
FYB40_RS08340	COG1127	ABC transporter
FYB40_RS08345	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FYB40_RS08350	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FYB40_RS08355	COG2853	Lipoprotein
FYB40_RS08365	COG1131	(ABC) transporter
FYB40_RS08370	COG0842	Transport permease protein
FYB40_RS08390	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FYB40_RS08400	COG0131	Imidazoleglycerol-phosphate dehydratase
FYB40_RS08410	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
FYB40_RS08425	COG0140	phosphoribosyl-ATP diphosphatase activity
FYB40_RS08430	COG0537	adenosine 5'-monophosphoramidase activity
FYB40_RS08435	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FYB40_RS08460	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FYB40_RS08470	COG0723	plastoquinol--plastocyanin reductase activity
FYB40_RS08475	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FYB40_RS08480	COG2857	Cytochrome c1
FYB40_RS08485	COG0625	glutathione transferase activity
FYB40_RS08490	COG2969	positive regulation of protein catabolic process
FYB40_RS08520	COG0583	DNA-binding transcription factor activity
FYB40_RS08525	COG0492	ferredoxin-NADP+ reductase activity
FYB40_RS08545	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS08555	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS08575	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS08610	COG3702	type iv secretory pathway
FYB40_RS08630	COG3736	Type IV secretory pathway, component VirB8
FYB40_RS08645	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
FYB40_RS08655	COG0697	spore germination
FYB40_RS08675	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
FYB40_RS08680	COG0747	negative chemotaxis
FYB40_RS08685	COG0601	transmembrane transport
FYB40_RS08690	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS08700	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
FYB40_RS08710	COG0513	Belongs to the DEAD box helicase family
FYB40_RS08715	COG1280	lysine exporter protein (LysE YggA)
FYB40_RS08740	COG0583	DNA-binding transcription factor activity
FYB40_RS08750	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FYB40_RS08760	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYB40_RS08765	COG0154	amidase activity
FYB40_RS08770	COG1609	Transcriptional regulator
FYB40_RS08790	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FYB40_RS08795	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FYB40_RS08800	COG3842	ATPase activity
FYB40_RS08805	COG1653	transport
FYB40_RS08810	COG1175	transmembrane transport
FYB40_RS08815	COG0395	ABC-type sugar transport system, permease component
FYB40_RS08850	COG1280	lysine exporter protein (LysE YggA)
FYB40_RS08865	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS08875	COG0183	Belongs to the thiolase family
FYB40_RS08880	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FYB40_RS08900	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS08910	COG2358	TRAP transporter, solute receptor (TAXI family
FYB40_RS08925	COG2922	Belongs to the Smg family
FYB40_RS08950	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB40_RS08955	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS08960	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS08965	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS08975	COG0028	Belongs to the TPP enzyme family
FYB40_RS08980	COG1522	sequence-specific DNA binding
FYB40_RS08985	COG3781	membrane
FYB40_RS09015	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FYB40_RS09040	COG1304	FMN binding
FYB40_RS09060	COG1414	Transcriptional regulator
FYB40_RS09075	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
FYB40_RS09080	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FYB40_RS09085	COG0594	ribonuclease P activity
FYB40_RS09090	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
FYB40_RS09100	COG0753	catalase activity
FYB40_RS09105	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS09110	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB40_RS09120	COG2175	clavaminate synthase activity
FYB40_RS09125	COG1473	amidohydrolase
FYB40_RS09130	COG4608	Belongs to the ABC transporter superfamily
FYB40_RS09135	COG0444	Belongs to the ABC transporter superfamily
FYB40_RS09145	COG0601	transmembrane transport
FYB40_RS09150	COG0747	negative chemotaxis
FYB40_RS09190	COG0436	Aminotransferase
FYB40_RS09195	COG1278	Cold shock
FYB40_RS09205	COG0357	Ribosomal RNA small subunit methyltransferase G
FYB40_RS09210	COG1192	Involved in chromosome partitioning
FYB40_RS09220	COG1475	DNA binding
FYB40_RS09225	COG0252	asparaginase activity
FYB40_RS09245	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FYB40_RS09255	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FYB40_RS09270	COG0081	regulation of translation
FYB40_RS09275	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
FYB40_RS09280	COG0222	ribosome binding
FYB40_RS09290	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
FYB40_RS09325	COG1230	cation diffusion facilitator family transporter
FYB40_RS09335	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
FYB40_RS09340	COG0049	tRNA binding
FYB40_RS09350	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FYB40_RS09360	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
FYB40_RS09370	COG0089	rRNA binding
FYB40_RS09375	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
FYB40_RS09385	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
FYB40_RS09390	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
FYB40_RS09395	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
FYB40_RS09400	COG0255	Belongs to the universal ribosomal protein uL29 family
FYB40_RS09405	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
FYB40_RS09425	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
FYB40_RS09430	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
FYB40_RS09435	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
FYB40_RS09440	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
FYB40_RS09445	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
FYB40_RS09455	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
FYB40_RS09460	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
FYB40_RS09465	COG1841	ribosomal large subunit assembly
FYB40_RS09475	COG0201	protein transport
FYB40_RS09480	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FYB40_RS09485	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FYB40_RS09490	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
FYB40_RS09495	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
FYB40_RS09500	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
FYB40_RS09505	COG0202	RNA polymerase activity
FYB40_RS09510	COG0203	ribosomal protein L17
FYB40_RS09515	COG0537	adenosine 5'-monophosphoramidase activity
FYB40_RS09520	COG1324	tolerance protein
FYB40_RS09525	COG4232	protein-disulfide reductase activity
FYB40_RS09540	COG0218	Necessary for normal cell division and for the maintenance of normal septation
FYB40_RS09550	COG1333	cytochrome c biogenesis protein
FYB40_RS09555	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYB40_RS09580	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
FYB40_RS09585	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
FYB40_RS09605	COG2814	Major facilitator Superfamily
FYB40_RS09650	COG0402	S-adenosylhomocysteine deaminase activity
FYB40_RS09660	COG0438	transferase activity, transferring glycosyl groups
FYB40_RS09680	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS09710	COG2186	Transcriptional regulator
FYB40_RS09730	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB40_RS09735	COG1956	GAF domain-containing protein
FYB40_RS09740	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB40_RS09770	COG0531	amino acid
FYB40_RS09800	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
FYB40_RS09805	COG3568	Endonuclease Exonuclease Phosphatase
FYB40_RS09810	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYB40_RS09830	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYB40_RS09840	COG0367	asparagine synthase
FYB40_RS09860	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FYB40_RS09865	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FYB40_RS09905	COG0367	asparagine synthase
FYB40_RS09910	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
FYB40_RS09935	COG0367	asparagine synthase
FYB40_RS09945	COG0438	transferase activity, transferring glycosyl groups
FYB40_RS09965	COG0438	transferase activity, transferring glycosyl groups
FYB40_RS09970	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FYB40_RS09975	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FYB40_RS10005	COG0859	PFAM glycosyl transferase family 9
FYB40_RS10040	COG1127	ABC transporter
FYB40_RS10060	COG1686	Belongs to the peptidase S11 family
FYB40_RS10100	COG2096	Adenosyltransferase
FYB40_RS10125	COG0523	cobalamin synthesis protein
FYB40_RS10130	COG0735	belongs to the Fur family
FYB40_RS10140	COG1121	(ABC) transporter
FYB40_RS10150	COG0803	Belongs to the bacterial solute-binding protein 9 family
FYB40_RS10160	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
FYB40_RS10170	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
FYB40_RS10180	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
FYB40_RS10185	COG1560	Kdo2-lipid A biosynthetic process
FYB40_RS10195	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
FYB40_RS10215	COG1950	PFAM Membrane protein of
FYB40_RS10225	COG0583	DNA-binding transcription factor activity
FYB40_RS10235	COG0477	Major facilitator Superfamily
FYB40_RS10260	COG0513	Belongs to the DEAD box helicase family
FYB40_RS10270	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYB40_RS10275	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FYB40_RS10290	COG0735	belongs to the Fur family
FYB40_RS10310	COG0438	transferase activity, transferring glycosyl groups
FYB40_RS10335	COG0640	Transcriptional regulator
FYB40_RS10395	COG0583	DNA-binding transcription factor activity
FYB40_RS10410	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FYB40_RS10415	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB40_RS10420	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB40_RS10435	COG0758	DNA mediated transformation
FYB40_RS10440	COG1522	sequence-specific DNA binding
FYB40_RS10450	COG0242	peptide deformylase activity
FYB40_RS10465	COG0546	phosphoglycolate phosphatase activity
FYB40_RS10485	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FYB40_RS10490	COG1942	4-Oxalocrotonate Tautomerase
FYB40_RS10495	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB40_RS10530	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FYB40_RS10530	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYB40_RS10540	COG5000	phosphorelay sensor kinase activity
FYB40_RS10545	COG2204	response regulator
FYB40_RS10570	COG2068	MobA-Related Protein
FYB40_RS10585	COG0596	Alpha beta hydrolase
FYB40_RS10590	COG2309	aminopeptidase activity
FYB40_RS10595	COG1335	isochorismatase
FYB40_RS10625	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB40_RS10650	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB40_RS10655	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS10675	COG2226	methyltransferase
FYB40_RS10690	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS10700	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
FYB40_RS10705	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYB40_RS10710	COG1054	Belongs to the UPF0176 family
FYB40_RS10720	COG4942	peptidase
FYB40_RS10725	COG0793	Belongs to the peptidase S41A family
FYB40_RS10730	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FYB40_RS10750	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYB40_RS10785	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
FYB40_RS10790	COG0211	Belongs to the bacterial ribosomal protein bL27 family
FYB40_RS10795	COG0261	This protein binds to 23S rRNA in the presence of protein L20
FYB40_RS10805	COG0142	geranyltranstransferase activity
FYB40_RS10815	COG0583	DNA-binding transcription factor activity
FYB40_RS10825	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
FYB40_RS10830	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB40_RS10845	COG2994	toxin metabolic process
FYB40_RS10855	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
FYB40_RS10860	COG2274	protein secretion by the type I secretion system
FYB40_RS10865	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB40_RS10870	COG1538	Outer membrane efflux protein
FYB40_RS10885	COG0765	amino acid transport
FYB40_RS10890	COG0765	amino acid transport
FYB40_RS10895	COG1126	abc transporter atp-binding protein
FYB40_RS10915	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS10925	COG1802	Transcriptional regulator
FYB40_RS10940	COG1802	Transcriptional regulator
FYB40_RS10950	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS10960	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS10990	COG0583	DNA-binding transcription factor activity
FYB40_RS10995	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS11000	COG2301	Belongs to the HpcH HpaI aldolase family
FYB40_RS11005	COG2188	Transcriptional regulator
FYB40_RS11050	COG0583	DNA-binding transcription factor activity
FYB40_RS11055	COG1024	Enoyl-CoA hydratase
FYB40_RS11090	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS11105	COG1902	pentaerythritol trinitrate reductase activity
FYB40_RS11130	COG0745	RESPONSE REGULATOR receiver
FYB40_RS11170	COG2890	protein-(glutamine-N5) methyltransferase activity
FYB40_RS11175	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
FYB40_RS11185	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS11255	COG4211	Belongs to the binding-protein-dependent transport system permease family
FYB40_RS11265	COG0683	leucine binding
FYB40_RS11270	COG0154	amidase activity
FYB40_RS11275	COG0288	reversible hydration of carbon dioxide
FYB40_RS11295	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYB40_RS11310	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FYB40_RS11320	COG1414	Transcriptional regulator
FYB40_RS11325	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS11330	COG2031	fatty acid transporter
FYB40_RS11335	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB40_RS11370	COG2808	Putative FMN-binding domain
FYB40_RS11375	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB40_RS11380	COG0747	negative chemotaxis
FYB40_RS11385	COG0657	acetylesterase activity
FYB40_RS11395	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYB40_RS11400	COG2207	Transcriptional regulator
FYB40_RS11425	COG1538	Outer membrane efflux protein
FYB40_RS11440	COG0583	DNA-binding transcription factor activity
FYB40_RS11445	COG0628	permease
FYB40_RS11455	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FYB40_RS11460	COG0251	oxidation-reduction process
FYB40_RS11470	COG0330	HflC and HflK could
FYB40_RS11475	COG3422	double-strand break repair
FYB40_RS11490	COG0583	DNA-binding transcription factor activity
FYB40_RS11525	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS11535	COG1414	Transcriptional regulator
FYB40_RS11540	COG1024	Enoyl-CoA hydratase
FYB40_RS11545	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB40_RS11550	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS11555	COG0604	alcohol dehydrogenase
FYB40_RS11560	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS11565	COG0583	DNA-binding transcription factor activity
FYB40_RS11590	COG0251	oxidation-reduction process
FYB40_RS11600	COG2031	fatty acid transporter
FYB40_RS11630	COG1278	Cold shock
FYB40_RS11635	COG0583	DNA-binding transcription factor activity
FYB40_RS11645	COG3119	arylsulfatase activity
FYB40_RS11660	COG1228	amidohydrolase
FYB40_RS11665	COG0523	cobalamin synthesis protein
FYB40_RS11670	COG1819	glycosyl
FYB40_RS11755	COG0625	glutathione transferase activity
FYB40_RS11770	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYB40_RS11775	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FYB40_RS11780	COG1652	LysM domain
FYB40_RS11805	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS11810	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYB40_RS11845	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB40_RS11900	COG0583	DNA-binding transcription factor activity
FYB40_RS11905	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS11915	COG1024	Enoyl-CoA hydratase
FYB40_RS11920	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS11945	COG0028	Belongs to the TPP enzyme family
FYB40_RS11955	COG1024	Enoyl-CoA hydratase
FYB40_RS11955	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB40_RS11960	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS11965	COG1414	Transcriptional regulator
FYB40_RS11985	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS11990	COG1609	Transcriptional regulator
FYB40_RS12015	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB40_RS12020	COG1024	Enoyl-CoA hydratase
FYB40_RS12035	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS12040	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS12045	COG0583	DNA-binding transcription factor activity
FYB40_RS12060	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS12070	COG0066	3-isopropylmalate dehydratase activity
FYB40_RS12075	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FYB40_RS12085	COG1053	succinate dehydrogenase
FYB40_RS12085	COG3976	FMN-binding domain protein
FYB40_RS12120	COG0683	leucine binding
FYB40_RS12130	COG1309	transcriptional regulator
FYB40_RS12150	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS12155	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS12160	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS12165	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS12175	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FYB40_RS12185	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
FYB40_RS12190	COG1053	succinate dehydrogenase
FYB40_RS12200	COG2030	dehydratase
FYB40_RS12210	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS12220	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS12245	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB40_RS12265	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYB40_RS12265	COG1902	pentaerythritol trinitrate reductase activity
FYB40_RS12280	COG0427	acetyl-CoA hydrolase
FYB40_RS12285	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS12300	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FYB40_RS12320	COG0183	Belongs to the thiolase family
FYB40_RS12325	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB40_RS12335	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS12340	COG0583	DNA-binding transcription factor activity
FYB40_RS12345	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS12360	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
FYB40_RS12385	COG1309	transcriptional regulator
FYB40_RS12395	COG1024	Enoyl-CoA hydratase
FYB40_RS12415	COG1024	Enoyl-CoA hydratase
FYB40_RS12420	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS12425	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS12430	COG1454	alcohol dehydrogenase
FYB40_RS12435	COG1024	Enoyl-CoA hydratase
FYB40_RS12455	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS12460	COG0431	NADPH-dependent FMN reductase
FYB40_RS12465	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS12470	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB40_RS12485	COG1414	Transcriptional regulator
FYB40_RS12490	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYB40_RS12495	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS12500	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS12525	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS12545	COG1024	Enoyl-CoA hydratase
FYB40_RS12555	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS12560	COG1024	Enoyl-CoA hydratase
FYB40_RS12565	COG0183	Belongs to the thiolase family
FYB40_RS12570	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS12585	COG0583	DNA-binding transcription factor activity
FYB40_RS12590	COG2267	carboxylic ester hydrolase activity
FYB40_RS12605	COG0625	glutathione transferase activity
FYB40_RS12610	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS12620	COG2186	Transcriptional regulator
FYB40_RS12625	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS12630	COG0626	cystathionine gamma-synthase activity
FYB40_RS12670	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB40_RS12675	COG0436	Aminotransferase
FYB40_RS12680	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB40_RS12685	COG0765	amino acid transport
FYB40_RS12695	COG1473	amidohydrolase
FYB40_RS12700	COG1414	Transcriptional regulator
FYB40_RS12710	COG0154	amidase activity
FYB40_RS12770	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB40_RS12785	COG3135	benzoate transporter
FYB40_RS12830	COG5444	nuclease activity
FYB40_RS12950	COG3468	outer membrane autotransporter barrel domain protein
FYB40_RS13015	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FYB40_RS13060	COG0489	protein tyrosine kinase activity
FYB40_RS13105	COG2081	HI0933 family
FYB40_RS13110	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FYB40_RS13125	COG0509	glycine decarboxylation via glycine cleavage system
FYB40_RS13150	COG1024	Enoyl-CoA hydratase
FYB40_RS13170	COG4172	Belongs to the ABC transporter superfamily
FYB40_RS13175	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS13180	COG0601	transmembrane transport
FYB40_RS13185	COG0747	negative chemotaxis
FYB40_RS13195	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB40_RS13225	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FYB40_RS13230	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FYB40_RS13245	COG0438	transferase activity, transferring glycosyl groups
FYB40_RS13265	COG0438	transferase activity, transferring glycosyl groups
FYB40_RS13285	COG0277	FAD linked oxidase domain protein
FYB40_RS13290	COG0745	RESPONSE REGULATOR receiver
FYB40_RS13295	COG0642	Histidine kinase
FYB40_RS13300	COG1368	sulfuric ester hydrolase activity
FYB40_RS13385	COG0012	GTP binding
FYB40_RS13400	COG0745	RESPONSE REGULATOR receiver
FYB40_RS13405	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS13410	COG1309	transcriptional regulator
FYB40_RS13420	COG2814	Major facilitator Superfamily
FYB40_RS13445	COG0280	phosphate acetyltransferase
FYB40_RS13445	COG0281	malic enzyme
FYB40_RS13455	COG0601	transmembrane transport
FYB40_RS13460	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS13465	COG4172	Belongs to the ABC transporter superfamily
FYB40_RS13480	COG0583	DNA-binding transcription factor activity
FYB40_RS13495	COG0640	Transcriptional regulator
FYB40_RS13510	COG3135	benzoate transporter
FYB40_RS13515	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYB40_RS13520	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
FYB40_RS13525	COG0742	ribosomal rna small subunit methyltransferase
FYB40_RS13540	COG3639	organic phosphonate transmembrane transporter activity
FYB40_RS13545	COG3639	organic phosphonate transmembrane transporter activity
FYB40_RS13575	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
FYB40_RS13580	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYB40_RS13590	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FYB40_RS13595	COG1546	Belongs to the CinA family
FYB40_RS13595	COG1058	Belongs to the CinA family
FYB40_RS13600	COG0284	orotidine-5'-phosphate decarboxylase activity
FYB40_RS13605	COG1252	NADH dehydrogenase
FYB40_RS13630	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
FYB40_RS13650	COG1053	succinate dehydrogenase
FYB40_RS13660	COG0583	DNA-binding transcription factor activity
FYB40_RS13665	COG1053	succinate dehydrogenase
FYB40_RS13670	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS13675	COG1414	Transcriptional regulator
FYB40_RS13690	COG1335	isochorismatase
FYB40_RS13705	COG0405	Gamma-glutamyltransferase
FYB40_RS13720	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS13725	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS13730	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS13735	COG0583	DNA-binding transcription factor activity
FYB40_RS13760	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS13765	COG0583	DNA-binding transcription factor activity
FYB40_RS13770	COG2199	diguanylate cyclase activity
FYB40_RS13825	COG1024	Enoyl-CoA hydratase
FYB40_RS13825	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB40_RS13830	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS13845	COG1024	Enoyl-CoA hydratase
FYB40_RS13850	COG1024	Enoyl-CoA hydratase
FYB40_RS13855	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS13860	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS13900	COG3685	Protein conserved in bacteria
FYB40_RS13910	COG0387	Pfam Sodium calcium exchanger
FYB40_RS13915	COG3795	YCII-related domain
FYB40_RS13920	COG2188	Transcriptional regulator
FYB40_RS13945	COG0154	amidase activity
FYB40_RS13950	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS13955	COG1024	Enoyl-CoA hydratase
FYB40_RS13965	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS13980	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS13985	COG1414	Transcriptional regulator
FYB40_RS14000	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB40_RS14005	COG0251	oxidation-reduction process
FYB40_RS14010	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB40_RS14030	COG1902	pentaerythritol trinitrate reductase activity
FYB40_RS14035	COG0583	DNA-binding transcription factor activity
FYB40_RS14045	COG0590	tRNA wobble adenosine to inosine editing
FYB40_RS14050	COG2807	transmembrane transport
FYB40_RS14055	COG0307	riboflavin synthase, alpha
FYB40_RS14060	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS14065	COG1522	sequence-specific DNA binding
FYB40_RS14075	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS14085	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS14125	COG1418	mRNA catabolic process
FYB40_RS14135	COG1335	isochorismatase
FYB40_RS14160	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB40_RS14165	COG2274	protein secretion by the type I secretion system
FYB40_RS14175	COG1538	Outer membrane efflux protein
FYB40_RS14180	COG0493	'glutamate synthase
FYB40_RS14180	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYB40_RS14190	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FYB40_RS14200	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS14210	COG1309	transcriptional regulator
FYB40_RS14215	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS14220	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS14225	COG2076	Multidrug Resistance protein
FYB40_RS14230	COG1309	transcriptional regulator
FYB40_RS14250	COG0840	transmembrane signaling receptor activity
FYB40_RS14265	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB40_RS14290	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS14300	COG1024	Enoyl-CoA hydratase
FYB40_RS14310	COG2199	diguanylate cyclase activity
FYB40_RS14310	COG2203	Gaf domain
FYB40_RS14330	COG0154	amidase activity
FYB40_RS14335	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB40_RS14335	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB40_RS14360	COG3945	hemerythrin HHE cation binding domain
FYB40_RS14375	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FYB40_RS14375	COG2169	Transcriptional regulator
FYB40_RS14395	COG1271	oxidase subunit
FYB40_RS14400	COG1294	oxidase, subunit
FYB40_RS14410	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB40_RS14440	COG0596	Alpha beta hydrolase
FYB40_RS14445	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FYB40_RS14480	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FYB40_RS14485	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FYB40_RS14495	COG2070	2-Nitropropane dioxygenase
FYB40_RS14510	COG1917	Cupin 2, conserved barrel domain protein
FYB40_RS14510	COG2207	Transcriptional regulator
FYB40_RS14530	COG2900	Belongs to the SlyX family
FYB40_RS14540	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB40_RS14570	COG0583	DNA-binding transcription factor activity
FYB40_RS14575	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS14585	COG0583	DNA-binding transcription factor activity
FYB40_RS14610	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
FYB40_RS14620	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB40_RS14625	COG1845	cytochrome c oxidase, subunit III
FYB40_RS14630	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FYB40_RS14635	COG0640	Transcriptional regulator
FYB40_RS14700	COG1666	GTP binding
FYB40_RS14725	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS14735	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FYB40_RS14740	COG1845	cytochrome c oxidase, subunit III
FYB40_RS14745	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB40_RS14750	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FYB40_RS14755	COG0477	Major facilitator Superfamily
FYB40_RS14770	COG5006	permease, DMT superfamily
FYB40_RS14790	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FYB40_RS14805	COG3383	formate dehydrogenase (NAD+) activity
FYB40_RS14825	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FYB40_RS14830	COG0303	'Molybdopterin
FYB40_RS14835	COG0521	Mo-molybdopterin cofactor biosynthetic process
FYB40_RS14845	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
FYB40_RS14860	COG0412	Dienelactone hydrolase
FYB40_RS14870	COG0678	peroxiredoxin activity
FYB40_RS14880	COG0697	spore germination
FYB40_RS14925	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FYB40_RS14930	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
FYB40_RS14935	COG1335	isochorismatase
FYB40_RS14940	COG0523	cobalamin synthesis protein
FYB40_RS14945	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS14960	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS14970	COG1802	Transcriptional regulator
FYB40_RS14990	COG0667	Aldo Keto reductase
FYB40_RS15000	COG4535	Mg2 and Co2 transporter CorC
FYB40_RS15010	COG1702	phosphate starvation-inducible protein PhoH
FYB40_RS15025	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYB40_RS15030	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYB40_RS15035	COG1862	Preprotein translocase
FYB40_RS15040	COG0343	queuine tRNA-ribosyltransferase activity
FYB40_RS15050	COG2027	D-alanyl-D-alanine carboxypeptidase
FYB40_RS15095	COG0741	lytic transglycosylase activity
FYB40_RS15100	COG0436	Aminotransferase
FYB40_RS15110	COG0281	malic enzyme
FYB40_RS15110	COG0280	phosphate acetyltransferase
FYB40_RS15120	COG2732	(Barnase) inhibitor
FYB40_RS15125	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FYB40_RS15130	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FYB40_RS15135	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FYB40_RS15145	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FYB40_RS15150	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FYB40_RS15165	COG0625	glutathione transferase activity
FYB40_RS15195	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
FYB40_RS15205	COG0306	phosphate transporter
FYB40_RS15210	COG0521	Mo-molybdopterin cofactor biosynthetic process
FYB40_RS15220	COG0739	heme binding
FYB40_RS15230	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FYB40_RS15280	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
FYB40_RS15305	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FYB40_RS15310	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FYB40_RS15315	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FYB40_RS15320	COG0009	L-threonylcarbamoyladenylate synthase
FYB40_RS15325	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB40_RS15330	COG1414	Transcriptional regulator
FYB40_RS15345	COG0765	amino acid transport
FYB40_RS15350	COG1126	abc transporter atp-binding protein
FYB40_RS15370	COG0028	Belongs to the TPP enzyme family
FYB40_RS15375	COG0583	DNA-binding transcription factor activity
FYB40_RS15380	COG4974	Belongs to the 'phage' integrase family
FYB40_RS15385	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FYB40_RS15390	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
FYB40_RS15400	COG1686	Belongs to the peptidase S11 family
FYB40_RS15410	COG2814	Major facilitator Superfamily
FYB40_RS15420	COG1074	ATP-dependent DNA helicase activity
FYB40_RS15430	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FYB40_RS15445	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS15450	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FYB40_RS15460	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB40_RS15470	COG0505	Belongs to the CarA family
FYB40_RS15475	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FYB40_RS15505	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB40_RS15535	COG3976	FMN-binding domain protein
FYB40_RS15535	COG1053	succinate dehydrogenase
FYB40_RS15540	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS15570	COG3842	ATPase activity
FYB40_RS15580	COG0395	ABC-type sugar transport system, permease component
FYB40_RS15615	COG0420	3'-5' exonuclease activity
FYB40_RS15630	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FYB40_RS15630	COG2111	Na H antiporter
FYB40_RS15635	COG1006	Multisubunit Na H antiporter MnhC subunit
FYB40_RS15640	COG0651	ATP synthesis coupled electron transport
FYB40_RS15645	COG1863	multisubunit Na H antiporter MnhE subunit
FYB40_RS15650	COG2212	antiporter activity
FYB40_RS15670	COG0590	tRNA wobble adenosine to inosine editing
FYB40_RS15675	COG1619	proteins homologs of microcin C7 resistance protein MccF
FYB40_RS15680	COG1024	Enoyl-CoA hydratase
FYB40_RS15685	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB40_RS15695	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB40_RS15700	COG0488	(ABC) transporter
FYB40_RS15730	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB40_RS15735	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FYB40_RS15740	COG2252	PERMEase
FYB40_RS15750	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
FYB40_RS15790	COG0789	Transcriptional regulator
FYB40_RS15800	COG0678	peroxiredoxin activity
FYB40_RS15800	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYB40_RS15810	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
FYB40_RS15815	COG0584	glycerophosphoryl diester phosphodiesterase
FYB40_RS15820	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYB40_RS15830	COG4181	ATPase activity
FYB40_RS15885	COG2197	response regulator
FYB40_RS15905	COG3121	Chaperone
FYB40_RS15910	COG3188	usher protein
FYB40_RS15915	COG3539	Fimbrial protein
FYB40_RS15920	COG2831	hemolysin activation secretion protein
FYB40_RS15935	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB40_RS15960	COG0583	DNA-binding transcription factor activity
FYB40_RS15980	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB40_RS15985	COG0765	amino acid transport
FYB40_RS15990	COG1126	abc transporter atp-binding protein
FYB40_RS15995	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FYB40_RS16000	COG1758	RNA polymerase activity
FYB40_RS16005	COG0194	GDP metabolic process
FYB40_RS16010	COG3258	Cytochrome c
FYB40_RS16015	COG2863	cytochrome
FYB40_RS16020	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS16025	COG0791	NLP P60 protein
FYB40_RS16030	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FYB40_RS16075	COG5001	Diguanylate cyclase
FYB40_RS16075	COG5002	protein histidine kinase activity
FYB40_RS16085	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FYB40_RS16090	COG0174	glutamine synthetase
FYB40_RS16100	COG2204	response regulator
FYB40_RS16105	COG0583	DNA-binding transcription factor activity
FYB40_RS16110	COG1741	Belongs to the pirin family
FYB40_RS16115	COG1741	Belongs to the pirin family
FYB40_RS16120	COG3842	ATPase activity
FYB40_RS16130	COG1840	ABC-type Fe3 transport system, periplasmic component
FYB40_RS16140	COG0583	DNA-binding transcription factor activity
FYB40_RS16145	COG2814	Major facilitator Superfamily
FYB40_RS16150	COG0656	L-ascorbic acid biosynthetic process
FYB40_RS16155	COG3468	outer membrane autotransporter barrel domain protein
FYB40_RS16165	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FYB40_RS16170	COG0583	DNA-binding transcription factor activity
FYB40_RS16185	COG0783	Belongs to the Dps family
FYB40_RS16200	COG0463	Glycosyl transferase, family 2
FYB40_RS16220	COG0438	transferase activity, transferring glycosyl groups
FYB40_RS16235	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FYB40_RS16255	COG0300	oxidoreductase activity
FYB40_RS16270	COG3321	synthase
FYB40_RS16270	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS16270	COG0604	alcohol dehydrogenase
FYB40_RS16290	COG0395	ABC-type sugar transport system, permease component
FYB40_RS16295	COG1175	transmembrane transport
FYB40_RS16300	COG1653	transport
FYB40_RS16310	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
FYB40_RS16320	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB40_RS16340	COG1794	racemase activity, acting on amino acids and derivatives
FYB40_RS16345	COG0625	glutathione transferase activity
FYB40_RS16350	COG2133	pyrroloquinoline quinone binding
FYB40_RS16375	COG2363	Small membrane protein
FYB40_RS16390	COG1464	Belongs to the NlpA lipoprotein family
FYB40_RS16400	COG0688	phosphatidylethanolamine metabolic process
FYB40_RS16415	COG0095	Lipoate-protein ligase
FYB40_RS16430	COG0625	glutathione transferase activity
FYB40_RS16435	COG0386	Belongs to the glutathione peroxidase family
FYB40_RS16475	COG2259	Doxx family
FYB40_RS16490	COG0667	Aldo Keto reductase
FYB40_RS16535	COG1640	4-alpha-glucanotransferase
FYB40_RS16585	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FYB40_RS16610	COG0747	negative chemotaxis
FYB40_RS16615	COG0601	transmembrane transport
FYB40_RS16620	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS16625	COG4172	Belongs to the ABC transporter superfamily
FYB40_RS16680	COG0425	Belongs to the sulfur carrier protein TusA family
FYB40_RS16705	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FYB40_RS16715	COG0642	Histidine kinase
FYB40_RS16735	COG0105	UTP biosynthetic process
FYB40_RS16760	COG2976	Protein conserved in bacteria
FYB40_RS16765	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYB40_RS16770	COG1160	GTP binding
FYB40_RS16780	COG1923	regulation of RNA biosynthetic process
FYB40_RS16785	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FYB40_RS16790	COG0330	HflC and HflK could
FYB40_RS16795	COG0330	HflC and HflK could
FYB40_RS16810	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
FYB40_RS16815	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FYB40_RS16825	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FYB40_RS16885	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB40_RS16890	COG0683	leucine binding
FYB40_RS16895	COG4638	Rieske (2fe-2S)
FYB40_RS16905	COG1024	Enoyl-CoA hydratase
FYB40_RS16915	COG0633	Ferredoxin
FYB40_RS16920	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS16935	COG0183	Belongs to the thiolase family
FYB40_RS16945	COG4692	amylo-alpha-1,6-glucosidase activity
FYB40_RS16950	COG0583	DNA-binding transcription factor activity
FYB40_RS16970	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS16975	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS16995	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FYB40_RS17005	COG3829	transcription factor binding
FYB40_RS17035	COG0833	amino acid
FYB40_RS17055	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS17060	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FYB40_RS17065	COG0439	Biotin carboxylase
FYB40_RS17080	COG0395	ABC-type sugar transport system, permease component
FYB40_RS17085	COG1176	ABC-type spermidine putrescine transport system, permease component I
FYB40_RS17100	COG1414	Transcriptional regulator
FYB40_RS17105	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS17115	COG2188	Transcriptional regulator
FYB40_RS17140	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS17145	COG0583	DNA-binding transcription factor activity
FYB40_RS17165	COG1172	Belongs to the binding-protein-dependent transport system permease family
FYB40_RS17175	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB40_RS17185	COG1228	amidohydrolase
FYB40_RS17190	COG2267	carboxylic ester hydrolase activity
FYB40_RS17215	COG0861	Integral membrane protein TerC family
FYB40_RS17220	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS17235	COG1262	PFAM Formylglycine-generating sulfatase enzyme
FYB40_RS17275	COG3119	arylsulfatase activity
FYB40_RS17295	COG2197	response regulator
FYB40_RS17305	COG2944	sequence-specific DNA binding
FYB40_RS17310	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
FYB40_RS17315	COG0625	glutathione transferase activity
FYB40_RS17330	COG3119	arylsulfatase activity
FYB40_RS17345	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS17350	COG0183	Belongs to the thiolase family
FYB40_RS17365	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS17370	COG0583	DNA-binding transcription factor activity
FYB40_RS17375	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS17385	COG1024	Enoyl-CoA hydratase
FYB40_RS17395	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS17400	COG1024	Enoyl-CoA hydratase
FYB40_RS17400	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB40_RS17410	COG1454	alcohol dehydrogenase
FYB40_RS17415	COG0824	Thioesterase
FYB40_RS17440	COG0431	NADPH-dependent FMN reductase
FYB40_RS17470	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS17475	COG0583	DNA-binding transcription factor activity
FYB40_RS17500	COG0330	HflC and HflK could
FYB40_RS17520	COG3043	anaerobic respiration
FYB40_RS17525	COG3005	denitrification pathway
FYB40_RS17560	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB40_RS17590	COG4948	Mandelate Racemase Muconate Lactonizing
FYB40_RS17595	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS17625	COG0583	DNA-binding transcription factor activity
FYB40_RS17645	COG1695	Transcriptional regulator
FYB40_RS17655	COG3568	Endonuclease Exonuclease Phosphatase
FYB40_RS17665	COG0392	lysyltransferase activity
FYB40_RS17680	COG1058	Belongs to the CinA family
FYB40_RS17680	COG1546	Belongs to the CinA family
FYB40_RS17700	COG4575	ribosome binding
FYB40_RS17705	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
FYB40_RS17715	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS17770	COG0028	Belongs to the TPP enzyme family
FYB40_RS17775	COG2204	response regulator
FYB40_RS17780	COG2204	response regulator
FYB40_RS17825	COG0861	Integral membrane protein TerC family
FYB40_RS17830	COG0861	Integral membrane protein TerC family
FYB40_RS17835	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FYB40_RS17840	COG0045	succinate-CoA ligase (ADP-forming) activity
FYB40_RS17860	COG2137	regulation of response to DNA damage stimulus
FYB40_RS17865	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
FYB40_RS17885	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB40_RS17885	COG1024	Enoyl-CoA hydratase
FYB40_RS17890	COG3842	ATPase activity
FYB40_RS17905	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS17920	COG0183	Belongs to the thiolase family
FYB40_RS17925	COG0583	DNA-binding transcription factor activity
FYB40_RS17930	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS17945	COG0540	Belongs to the ATCase OTCase family
FYB40_RS17980	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB40_RS17995	COG1522	sequence-specific DNA binding
FYB40_RS18005	COG2367	Beta-lactamase
FYB40_RS18020	COG0500	methyltransferase
FYB40_RS18060	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
FYB40_RS18065	COG0291	Belongs to the bacterial ribosomal protein bL35 family
FYB40_RS18085	COG0004	ammonium transporteR
FYB40_RS18100	COG1309	transcriptional regulator
FYB40_RS18135	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYB40_RS18135	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYB40_RS18135	COG0506	proline dehydrogenase activity
FYB40_RS18145	COG3008	intermembrane lipid transfer
FYB40_RS18145	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FYB40_RS18150	COG2995	paraquat-inducible protein a
FYB40_RS18155	COG0542	response to heat
FYB40_RS18160	COG4953	penicillin-binding protein 1C
FYB40_RS18175	COG1278	Cold shock
FYB40_RS18185	COG0183	Belongs to the thiolase family
FYB40_RS18190	COG0038	chloride channel
FYB40_RS18195	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FYB40_RS18205	COG0811	peptide transport
FYB40_RS18210	COG0848	biopolymer transport protein
FYB40_RS18220	COG2835	tetraacyldisaccharide 4'-kinase activity
FYB40_RS18250	COG0268	Binds directly to 16S ribosomal RNA
FYB40_RS18270	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYB40_RS18275	COG2186	Transcriptional regulator
FYB40_RS18295	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FYB40_RS18305	COG0583	DNA-binding transcription factor activity
FYB40_RS18320	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FYB40_RS18330	COG3158	transport of potassium into the cell
FYB40_RS18335	COG0642	Histidine kinase
FYB40_RS18365	COG0776	regulation of translation
FYB40_RS18370	COG3128	pkhd-type hydroxylase
FYB40_RS18380	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYB40_RS18385	COG0557	exoribonuclease II activity
FYB40_RS18410	COG0679	Auxin Efflux Carrier
FYB40_RS18420	COG0069	glutamate synthase activity
FYB40_RS18425	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYB40_RS18435	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
FYB40_RS18475	COG3706	GGDEF domain
FYB40_RS18510	COG3909	cytochrome
FYB40_RS18515	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FYB40_RS18520	COG0625	glutathione transferase activity
FYB40_RS18525	COG0730	response to heat
FYB40_RS18535	COG0583	DNA-binding transcription factor activity
FYB40_RS18575	COG2819	hydrolase of the alpha beta superfamily
FYB40_RS18580	COG0247	lactate metabolic process
FYB40_RS18590	COG0277	FAD linked oxidase domain protein
FYB40_RS18595	COG0277	FAD linked oxidase domain protein
FYB40_RS18600	COG3064	Membrane
FYB40_RS18600	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYB40_RS18600	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYB40_RS18600	COG3210	domain, Protein
FYB40_RS18600	COG3064	Membrane
FYB40_RS18600	COG3210	domain, Protein
FYB40_RS18605	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYB40_RS18610	COG0312	modulator of DNA gyrase
FYB40_RS18630	COG0308	aminopeptidase N
FYB40_RS18635	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
FYB40_RS18655	COG0436	Aminotransferase
FYB40_RS18660	COG3737	Protein of unknown function (DUF498/DUF598)
FYB40_RS18665	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FYB40_RS18670	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
FYB40_RS18675	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FYB40_RS18685	COG0305	Participates in initiation and elongation during chromosome replication
FYB40_RS18705	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
FYB40_RS18710	COG2965	DNA replication, synthesis of RNA primer
FYB40_RS18715	COG0360	Binds together with S18 to 16S ribosomal RNA
FYB40_RS18720	COG1469	GTP cyclohydrolase I activity
FYB40_RS18730	COG0142	geranyltranstransferase activity
FYB40_RS18735	COG1722	exodeoxyribonuclease VII activity
FYB40_RS18745	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS18780	COG1840	ABC-type Fe3 transport system, periplasmic component
FYB40_RS18785	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYB40_RS18790	COG1178	ABC-type Fe3 transport system permease component
FYB40_RS18795	COG3842	ATPase activity
FYB40_RS18800	COG0583	DNA-binding transcription factor activity
FYB40_RS18820	COG0501	Belongs to the peptidase M48B family
FYB40_RS18830	COG0697	spore germination
FYB40_RS18840	COG1846	Transcriptional regulator
FYB40_RS18860	COG0473	3-isopropylmalate dehydrogenase activity
FYB40_RS18870	COG0747	negative chemotaxis
FYB40_RS18880	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS18890	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FYB40_RS18915	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS18925	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB40_RS18930	COG0433	COG0433 Predicted ATPase
FYB40_RS18940	COG0151	Belongs to the GarS family
FYB40_RS18955	COG0799	negative regulation of ribosome biogenesis
FYB40_RS18970	COG3468	outer membrane autotransporter barrel domain protein
FYB40_RS19010	COG0385	Bile acid
FYB40_RS19015	COG0427	acetyl-CoA hydrolase
FYB40_RS19020	COG0583	DNA-binding transcription factor activity
FYB40_RS19025	COG3264	Mechanosensitive ion channel
FYB40_RS19025	COG1511	domain protein
FYB40_RS19040	COG0730	response to heat
FYB40_RS19045	COG0697	spore germination
FYB40_RS19080	COG2885	chlorophyll binding
FYB40_RS19100	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FYB40_RS19105	COG3384	dioxygenase
FYB40_RS19120	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
FYB40_RS19125	COG3474	cytochrome
FYB40_RS19190	COG4964	Belongs to the GSP D family
FYB40_RS19240	COG4172	Belongs to the ABC transporter superfamily
FYB40_RS19245	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB40_RS19250	COG0601	transmembrane transport
FYB40_RS19255	COG0747	negative chemotaxis
FYB40_RS19265	COG0598	Magnesium transport protein CorA
FYB40_RS19285	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FYB40_RS19295	COG0483	inositol monophosphate 1-phosphatase activity
FYB40_RS19320	COG1045	serine acetyltransferase
FYB40_RS19325	COG0166	Belongs to the GPI family
FYB40_RS19340	COG2197	response regulator
FYB40_RS19355	COG0183	Belongs to the thiolase family
FYB40_RS19370	COG1024	Enoyl-CoA hydratase
FYB40_RS19370	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB40_RS19375	COG0183	Belongs to the thiolase family
FYB40_RS19385	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS19395	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS19410	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYB40_RS19410	COG1017	nitric oxide dioxygenase activity
FYB40_RS19415	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYB40_RS19415	COG2010	Cytochrome c
FYB40_RS19420	COG1335	isochorismatase
FYB40_RS19425	COG2309	aminopeptidase activity
FYB40_RS19430	COG0596	Alpha beta hydrolase
FYB40_RS19440	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYB40_RS19445	COG2080	2 iron, 2 sulfur cluster binding
FYB40_RS19475	COG1846	Transcriptional regulator
FYB40_RS19495	COG0726	polysaccharide deacetylase
FYB40_RS19495	COG1649	PFAM Uncharacterised BCR, COG1649
FYB40_RS19500	COG1215	transferase activity, transferring glycosyl groups
FYB40_RS19510	COG1902	pentaerythritol trinitrate reductase activity
FYB40_RS19535	COG0251	oxidation-reduction process
FYB40_RS19545	COG1832	CoA-binding protein
FYB40_RS19555	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYB40_RS19555	COG1902	pentaerythritol trinitrate reductase activity
FYB40_RS19565	COG3842	ATPase activity
FYB40_RS19590	COG0583	DNA-binding transcription factor activity
FYB40_RS19600	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS19610	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYB40_RS19625	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB40_RS19625	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB40_RS19650	COG0527	aspartate kinase activity
FYB40_RS19660	COG0825	malonyl-CoA metabolic process
FYB40_RS19675	COG3063	Type IV pilus biogenesis stability protein PilW
FYB40_RS19695	COG1253	flavin adenine dinucleotide binding
FYB40_RS19700	COG0483	inositol monophosphate 1-phosphatase activity
FYB40_RS19720	COG0668	transmembrane transport
FYB40_RS19755	COG3360	Dodecin
FYB40_RS19765	COG2850	peptidyl-arginine hydroxylation
FYB40_RS19775	COG3539	Fimbrial protein
FYB40_RS19780	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
FYB40_RS19785	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB40_RS19790	COG1994	Peptidase M50
FYB40_RS19795	COG0009	L-threonylcarbamoyladenylate synthase
FYB40_RS19800	COG2321	neutral zinc metallopeptidase
FYB40_RS19840	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYB40_RS19845	COG1366	Belongs to the anti-sigma-factor antagonist family
FYB40_RS19855	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FYB40_RS19865	COG2208	phosphoserine phosphatase activity
FYB40_RS19865	COG2770	Histidine kinase
FYB40_RS19900	COG4792	protein secretion
FYB40_RS19905	COG4791	protein targeting
FYB40_RS19910	COG4794	Type iii secretion
FYB40_RS19950	COG4669	(LipO)protein
FYB40_RS20050	COG0251	oxidation-reduction process
FYB40_RS20090	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS20140	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB40_RS20155	COG0583	DNA-binding transcription factor activity
FYB40_RS20160	COG3971	2-oxopent-4-enoate hydratase activity
FYB40_RS20190	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB40_RS20205	COG0511	ligase activity, forming carbon-carbon bonds
FYB40_RS20215	COG0439	Biotin carboxylase
FYB40_RS20220	COG2188	Transcriptional regulator
FYB40_RS20245	COG0511	ligase activity, forming carbon-carbon bonds
FYB40_RS20255	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
FYB40_RS20265	COG1012	belongs to the aldehyde dehydrogenase family
FYB40_RS20275	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
FYB40_RS20300	COG1132	(ABC) transporter
FYB40_RS20310	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FYB40_RS20350	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FYB40_RS20385	COG0583	DNA-binding transcription factor activity
FYB40_RS20405	COG3181	Tripartite tricarboxylate transporter family receptor
FYB40_RS20435	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB40_RS20450	COG1126	abc transporter atp-binding protein
FYB40_RS20455	COG0765	amino acid transport
FYB40_RS20460	COG4597	amino acid ABC transporter
FYB40_RS20465	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB40_RS20470	COG1473	amidohydrolase
FYB40_RS20475	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB40_RS20480	COG1522	sequence-specific DNA binding
FYB40_RS20490	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB40_RS20500	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB40_RS20505	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB40_RS20510	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB40_RS20530	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB40_RS20535	COG0154	amidase activity
FYB40_RS20545	COG1137	ATPase activity
FYB40_RS20575	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB40_RS20615	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB40_RS20745	COG0248	Ppx GppA phosphatase
FYB40_RS20765	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FYB40_RS20775	COG1534	Rna-binding protein
FYB40_RS20785	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYB40_RS20790	COG0840	transmembrane signaling receptor activity
FYB40_RS20810	COG3842	ATPase activity
FYB40_RS20820	COG0406	alpha-ribazole phosphatase activity
FYB40_RS20825	COG4221	oxidoreductase activity
FYB40_RS20840	COG0084	hydrolase, TatD family'
FYB40_RS20845	COG1136	(ABC) transporter
FYB40_RS20860	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FYB40_RS20870	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS20890	COG1022	Amp-dependent synthetase and ligase
FYB40_RS20920	COG1024	Enoyl-CoA hydratase
FYB40_RS20935	COG0633	Ferredoxin
FYB40_RS20950	COG0316	Belongs to the HesB IscA family
FYB40_RS20955	COG0822	iron-sulfur transferase activity
FYB40_RS20960	COG1104	cysteine desulfurase activity
FYB40_RS20970	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FYB40_RS20990	COG3468	outer membrane autotransporter barrel domain protein
FYB40_RS21000	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FYB40_RS21015	COG1960	acyl-CoA dehydrogenase activity
FYB40_RS21020	COG1028	Short-chain dehydrogenase reductase Sdr
FYB40_RS21035	COG1024	Enoyl-CoA hydratase
FYB40_RS21050	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB40_RS21055	COG0583	DNA-binding transcription factor activity
FYB40_RS21060	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FYB40_RS21070	COG0740	serine-type endopeptidase activity
FYB40_RS21085	COG1278	Cold shock
FYB40_RS21095	COG1278	Cold shock
FYB40_RS21125	COG0436	Aminotransferase
FYB40_RS21140	COG2890	protein-(glutamine-N5) methyltransferase activity
FYB40_RS21145	COG0488	(ABC) transporter
FYB40_RS21155	COG0210	DNA helicase
FYB40_RS21170	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYB40_RS21170	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FYB40_RS21175	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FYB40_RS21180	COG0196	riboflavin kinase activity
FYB40_RS21190	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
FYB40_RS21195	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FYB40_RS21205	COG1522	sequence-specific DNA binding
FYB40_RS21215	COG0586	Pfam SNARE associated Golgi protein
FYB40_RS21225	COG1126	abc transporter atp-binding protein
FYB40_RS21230	COG0765	amino acid transport
FYB40_RS21235	COG0765	amino acid transport
FYB40_RS21240	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB40_RS21250	COG2423	ornithine cyclodeaminase activity
FYB40_RS21255	COG1764	response to oxidative stress
FYB40_RS21265	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FYB40_RS21270	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYB40_RS21285	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
FYB40_RS21290	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FYB40_RS21295	COG2197	response regulator
FYB40_RS21305	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FYB40_RS21365	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB40_RS21380	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FYB40_RS21405	COG1122	ATPase activity
FYB40_RS21435	COG0437	4 iron, 4 sulfur cluster binding
FYB40_RS21440	COG3383	formate dehydrogenase (NAD+) activity
FYB40_RS21440	COG0243	molybdopterin cofactor binding
FYB40_RS21470	COG0489	protein tyrosine kinase activity
FYB40_RS21475	COG0746	molybdenum cofactor guanylyltransferase activity
FYB40_RS21480	COG0303	'Molybdopterin
FYB40_RS21485	COG1763	Mo-molybdopterin cofactor biosynthetic process
FYB40_RS21500	COG5001	Diguanylate cyclase
FYB40_RS21505	COG2205	protein histidine kinase activity
FYB40_RS21510	COG0745	RESPONSE REGULATOR receiver
FYB40_RS21525	COG1295	ribonuclease BN
FYB40_RS21535	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FYB40_RS21570	COG4964	Belongs to the GSP D family
FYB40_RS21610	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB40_RS21645	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FYB40_RS21650	COG3395	kinase activity
FYB40_RS21690	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB40_RS21695	COG2358	TRAP transporter, solute receptor (TAXI family
FYB40_RS21705	COG2311	Membrane
FYB40_RS21730	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FYB40_RS21745	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FYB40_RS21750	COG1760	l-serine dehydratase
FYB40_RS21755	COG1283	sodium-dependent phosphate transmembrane transporter activity
FYB40_RS21760	COG0412	Dienelactone hydrolase
FYB40_RS21775	COG1611	Belongs to the LOG family
FYB40_RS21810	COG0195	Participates in both transcription termination and antitermination
FYB40_RS21810	COG2251	uridine kinase activity
FYB40_RS21820	COG1187	pseudouridine synthase activity
FYB40_RS21825	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
FYB40_RS21835	COG0583	DNA-binding transcription factor activity
FYB40_RS21845	COG0523	cobalamin synthesis protein
FYB40_RS21865	COG0625	glutathione transferase activity
FYB40_RS21870	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
FYB40_RS21875	COG1047	Peptidyl-prolyl cis-trans
FYB40_RS21935	COG2304	oxidoreductase activity
FYB40_RS21955	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FYB40_RS21960	COG1562	ergosterol biosynthetic process
FYB40_RS21965	COG1562	ergosterol biosynthetic process
FYB40_RS21970	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
FYB40_RS21970	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
FYB40_RS21990	COG1131	(ABC) transporter
FYB40_RS22025	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
FYB40_RS22040	COG5564	TIM-barrel signal transduction protein
FYB40_RS22055	COG3468	outer membrane autotransporter barrel domain protein
FYB40_RS22065	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYB40_RS22080	COG0494	nUDIX hydrolase
FYB40_RS22085	COG3530	Putative quorum-sensing-regulated virulence factor
FYB40_RS22095	COG1595	DNA-templated transcription, initiation
FYB40_RS22100	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB40_RS22135	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB40_RS22140	COG0765	amino acid transport
FYB40_RS22145	COG0765	amino acid transport
FYB40_RS22175	COG2841	Protein conserved in bacteria
FYB40_RS22180	COG2814	Major facilitator Superfamily
FYB40_RS22195	COG0628	permease
FYB40_RS22200	COG0842	Transport permease protein
FYB40_RS22205	COG1131	(ABC) transporter
FYB40_RS22250	COG3278	Belongs to the heme-copper respiratory oxidase family
FYB40_RS22280	COG4106	trans-aconitate 2-methyltransferase activity
FYB40_RS22280	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FYB40_RS22285	COG1380	Effector of murein hydrolase LrgA
FYB40_RS22290	COG1346	cytolysis
FYB40_RS22300	COG2224	Isocitrate lyase
FYB40_RS22315	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FYB40_RS22335	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
FYB40_RS22350	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB40_RS22375	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FYB40_RS22390	COG2032	superoxide dismutase activity
FYB40_RS22400	COG0318	PFAM AMP-dependent synthetase and ligase
FYB40_RS22405	COG1024	Enoyl-CoA hydratase
FYB40_RS22415	COG1802	Transcriptional regulator
FYB40_RS22425	COG0183	Belongs to the thiolase family
FYB40_RS22430	COG1942	4-Oxalocrotonate Tautomerase
FYB40_RS22440	COG4176	ABC-type proline glycine betaine transport system permease component
FYB40_RS22450	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FYB40_RS22455	COG2814	Major facilitator Superfamily
FYB40_RS22460	COG0227	Belongs to the bacterial ribosomal protein bL28 family
FYB40_RS22465	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FYB40_RS22485	COG2814	Major facilitator Superfamily