locus-tag	class	description
FYB42_RS00010	COG0357	Ribosomal RNA small subunit methyltransferase G
FYB42_RS00015	COG1192	Involved in chromosome partitioning
FYB42_RS00025	COG1475	DNA binding
FYB42_RS00030	COG0252	asparaginase activity
FYB42_RS00050	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FYB42_RS00060	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FYB42_RS00075	COG0081	regulation of translation
FYB42_RS00080	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
FYB42_RS00085	COG0222	ribosome binding
FYB42_RS00095	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
FYB42_RS00130	COG1230	cation diffusion facilitator family transporter
FYB42_RS00140	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
FYB42_RS00145	COG0049	tRNA binding
FYB42_RS00155	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FYB42_RS00165	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
FYB42_RS00175	COG0089	rRNA binding
FYB42_RS00180	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
FYB42_RS00190	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
FYB42_RS00195	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
FYB42_RS00200	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
FYB42_RS00205	COG0255	Belongs to the universal ribosomal protein uL29 family
FYB42_RS00210	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
FYB42_RS00230	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
FYB42_RS00235	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
FYB42_RS00240	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
FYB42_RS00245	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
FYB42_RS00250	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
FYB42_RS00260	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
FYB42_RS00265	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
FYB42_RS00270	COG1841	ribosomal large subunit assembly
FYB42_RS00280	COG0201	protein transport
FYB42_RS00285	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FYB42_RS00290	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FYB42_RS00295	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
FYB42_RS00300	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
FYB42_RS00305	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
FYB42_RS00310	COG0202	RNA polymerase activity
FYB42_RS00315	COG0203	ribosomal protein L17
FYB42_RS00320	COG0537	adenosine 5'-monophosphoramidase activity
FYB42_RS00325	COG1324	tolerance protein
FYB42_RS00330	COG4232	protein-disulfide reductase activity
FYB42_RS00345	COG0218	Necessary for normal cell division and for the maintenance of normal septation
FYB42_RS00355	COG1333	cytochrome c biogenesis protein
FYB42_RS00360	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYB42_RS00385	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
FYB42_RS00390	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
FYB42_RS00410	COG2814	Major facilitator Superfamily
FYB42_RS00455	COG0402	S-adenosylhomocysteine deaminase activity
FYB42_RS00465	COG0438	transferase activity, transferring glycosyl groups
FYB42_RS00485	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS00515	COG2186	Transcriptional regulator
FYB42_RS00535	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB42_RS00540	COG1956	GAF domain-containing protein
FYB42_RS00545	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB42_RS00575	COG0531	amino acid
FYB42_RS00605	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
FYB42_RS00610	COG3568	Endonuclease Exonuclease Phosphatase
FYB42_RS00615	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYB42_RS00635	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYB42_RS00645	COG0367	asparagine synthase
FYB42_RS00665	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FYB42_RS00670	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FYB42_RS00710	COG0367	asparagine synthase
FYB42_RS00715	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
FYB42_RS00740	COG0367	asparagine synthase
FYB42_RS00750	COG0438	transferase activity, transferring glycosyl groups
FYB42_RS00770	COG0438	transferase activity, transferring glycosyl groups
FYB42_RS00775	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FYB42_RS00780	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FYB42_RS00810	COG0859	PFAM glycosyl transferase family 9
FYB42_RS00840	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FYB42_RS00845	COG1127	ABC transporter
FYB42_RS00865	COG1686	Belongs to the peptidase S11 family
FYB42_RS00905	COG2096	Adenosyltransferase
FYB42_RS00930	COG0523	cobalamin synthesis protein
FYB42_RS00935	COG0735	belongs to the Fur family
FYB42_RS00945	COG1121	(ABC) transporter
FYB42_RS00955	COG0803	Belongs to the bacterial solute-binding protein 9 family
FYB42_RS00965	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
FYB42_RS00975	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
FYB42_RS00985	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
FYB42_RS00990	COG1560	Kdo2-lipid A biosynthetic process
FYB42_RS01000	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
FYB42_RS01020	COG1950	PFAM Membrane protein of
FYB42_RS01030	COG0583	DNA-binding transcription factor activity
FYB42_RS01040	COG0477	Major facilitator Superfamily
FYB42_RS01065	COG0513	Belongs to the DEAD box helicase family
FYB42_RS01075	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYB42_RS01080	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FYB42_RS01095	COG0735	belongs to the Fur family
FYB42_RS01115	COG0438	transferase activity, transferring glycosyl groups
FYB42_RS01140	COG0640	Transcriptional regulator
FYB42_RS01200	COG0583	DNA-binding transcription factor activity
FYB42_RS01215	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FYB42_RS01220	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB42_RS01225	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB42_RS01240	COG0758	DNA mediated transformation
FYB42_RS01245	COG1522	sequence-specific DNA binding
FYB42_RS01255	COG0242	peptide deformylase activity
FYB42_RS01270	COG0546	phosphoglycolate phosphatase activity
FYB42_RS01290	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FYB42_RS01295	COG1942	4-Oxalocrotonate Tautomerase
FYB42_RS01300	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB42_RS01335	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYB42_RS01335	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FYB42_RS01345	COG5000	phosphorelay sensor kinase activity
FYB42_RS01350	COG2204	response regulator
FYB42_RS01375	COG2068	MobA-Related Protein
FYB42_RS01390	COG0596	Alpha beta hydrolase
FYB42_RS01395	COG2309	aminopeptidase activity
FYB42_RS01400	COG1335	isochorismatase
FYB42_RS01430	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB42_RS01455	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB42_RS01460	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS01480	COG2226	methyltransferase
FYB42_RS01495	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS01505	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
FYB42_RS01510	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYB42_RS01515	COG1054	Belongs to the UPF0176 family
FYB42_RS01525	COG4942	peptidase
FYB42_RS01530	COG0793	Belongs to the peptidase S41A family
FYB42_RS01535	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FYB42_RS01555	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYB42_RS01590	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
FYB42_RS01595	COG0211	Belongs to the bacterial ribosomal protein bL27 family
FYB42_RS01600	COG0261	This protein binds to 23S rRNA in the presence of protein L20
FYB42_RS01610	COG0142	geranyltranstransferase activity
FYB42_RS01620	COG0583	DNA-binding transcription factor activity
FYB42_RS01630	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
FYB42_RS01635	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB42_RS01650	COG2994	toxin metabolic process
FYB42_RS01660	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
FYB42_RS01665	COG2274	protein secretion by the type I secretion system
FYB42_RS01670	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB42_RS01675	COG1538	Outer membrane efflux protein
FYB42_RS01690	COG0765	amino acid transport
FYB42_RS01695	COG0765	amino acid transport
FYB42_RS01700	COG1126	abc transporter atp-binding protein
FYB42_RS01720	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS01730	COG1802	Transcriptional regulator
FYB42_RS01745	COG1802	Transcriptional regulator
FYB42_RS01755	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS01765	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS01795	COG0583	DNA-binding transcription factor activity
FYB42_RS01800	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS01805	COG2301	Belongs to the HpcH HpaI aldolase family
FYB42_RS01810	COG2188	Transcriptional regulator
FYB42_RS01855	COG0583	DNA-binding transcription factor activity
FYB42_RS01860	COG1024	Enoyl-CoA hydratase
FYB42_RS01895	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS01910	COG1902	pentaerythritol trinitrate reductase activity
FYB42_RS01935	COG0745	RESPONSE REGULATOR receiver
FYB42_RS01975	COG2890	protein-(glutamine-N5) methyltransferase activity
FYB42_RS01980	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
FYB42_RS01990	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS02060	COG4211	Belongs to the binding-protein-dependent transport system permease family
FYB42_RS02070	COG0683	leucine binding
FYB42_RS02075	COG0154	amidase activity
FYB42_RS02080	COG0288	reversible hydration of carbon dioxide
FYB42_RS02100	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYB42_RS02115	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FYB42_RS02125	COG1414	Transcriptional regulator
FYB42_RS02130	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS02135	COG2031	fatty acid transporter
FYB42_RS02140	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB42_RS02175	COG2808	Putative FMN-binding domain
FYB42_RS02180	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB42_RS02185	COG0747	negative chemotaxis
FYB42_RS02190	COG0657	acetylesterase activity
FYB42_RS02200	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYB42_RS02205	COG2207	Transcriptional regulator
FYB42_RS02230	COG1538	Outer membrane efflux protein
FYB42_RS02245	COG0583	DNA-binding transcription factor activity
FYB42_RS02250	COG0628	permease
FYB42_RS02260	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FYB42_RS02265	COG0251	oxidation-reduction process
FYB42_RS02275	COG0330	HflC and HflK could
FYB42_RS02280	COG3422	double-strand break repair
FYB42_RS02295	COG0583	DNA-binding transcription factor activity
FYB42_RS02330	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS02335	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS02340	COG1414	Transcriptional regulator
FYB42_RS02345	COG1024	Enoyl-CoA hydratase
FYB42_RS02350	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB42_RS02355	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS02360	COG0604	alcohol dehydrogenase
FYB42_RS02365	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS02370	COG0583	DNA-binding transcription factor activity
FYB42_RS02380	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS02395	COG0251	oxidation-reduction process
FYB42_RS02405	COG2031	fatty acid transporter
FYB42_RS02435	COG1278	Cold shock
FYB42_RS02440	COG0583	DNA-binding transcription factor activity
FYB42_RS02450	COG3119	arylsulfatase activity
FYB42_RS02465	COG1228	amidohydrolase
FYB42_RS02470	COG0523	cobalamin synthesis protein
FYB42_RS02475	COG1819	glycosyl
FYB42_RS02560	COG0625	glutathione transferase activity
FYB42_RS02575	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYB42_RS02580	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FYB42_RS02585	COG1652	LysM domain
FYB42_RS02610	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS02615	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYB42_RS02650	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB42_RS02705	COG0583	DNA-binding transcription factor activity
FYB42_RS02710	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS02720	COG1024	Enoyl-CoA hydratase
FYB42_RS02725	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS02750	COG0028	Belongs to the TPP enzyme family
FYB42_RS02760	COG1024	Enoyl-CoA hydratase
FYB42_RS02760	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB42_RS02765	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS02770	COG1414	Transcriptional regulator
FYB42_RS02790	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS02795	COG1609	Transcriptional regulator
FYB42_RS02820	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB42_RS02825	COG1024	Enoyl-CoA hydratase
FYB42_RS02840	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS02845	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS02850	COG0583	DNA-binding transcription factor activity
FYB42_RS02865	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS02880	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FYB42_RS02890	COG3976	FMN-binding domain protein
FYB42_RS02890	COG1053	succinate dehydrogenase
FYB42_RS02925	COG0683	leucine binding
FYB42_RS02935	COG1309	transcriptional regulator
FYB42_RS02955	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS02960	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS02965	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS02970	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS02980	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FYB42_RS02990	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
FYB42_RS02995	COG1053	succinate dehydrogenase
FYB42_RS03005	COG2030	dehydratase
FYB42_RS03015	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS03020	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS03025	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS03050	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB42_RS03070	COG1902	pentaerythritol trinitrate reductase activity
FYB42_RS03070	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYB42_RS03085	COG0427	acetyl-CoA hydrolase
FYB42_RS03090	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS03105	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FYB42_RS03125	COG0183	Belongs to the thiolase family
FYB42_RS03130	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB42_RS03140	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS03145	COG0583	DNA-binding transcription factor activity
FYB42_RS03150	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS03165	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
FYB42_RS03190	COG1309	transcriptional regulator
FYB42_RS03200	COG1024	Enoyl-CoA hydratase
FYB42_RS03220	COG1024	Enoyl-CoA hydratase
FYB42_RS03225	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS03230	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS03235	COG1454	alcohol dehydrogenase
FYB42_RS03240	COG1024	Enoyl-CoA hydratase
FYB42_RS03260	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS03265	COG0431	NADPH-dependent FMN reductase
FYB42_RS03270	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS03275	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB42_RS03290	COG1414	Transcriptional regulator
FYB42_RS03295	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYB42_RS03300	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS03305	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS03330	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS03350	COG1024	Enoyl-CoA hydratase
FYB42_RS03360	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS03365	COG1024	Enoyl-CoA hydratase
FYB42_RS03370	COG0183	Belongs to the thiolase family
FYB42_RS03375	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS03390	COG0583	DNA-binding transcription factor activity
FYB42_RS03395	COG2267	carboxylic ester hydrolase activity
FYB42_RS03410	COG0625	glutathione transferase activity
FYB42_RS03415	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS03425	COG2186	Transcriptional regulator
FYB42_RS03430	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS03435	COG0626	cystathionine gamma-synthase activity
FYB42_RS03475	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB42_RS03480	COG0436	Aminotransferase
FYB42_RS03485	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB42_RS03490	COG0765	amino acid transport
FYB42_RS03500	COG1473	amidohydrolase
FYB42_RS03505	COG1414	Transcriptional regulator
FYB42_RS03515	COG0154	amidase activity
FYB42_RS03575	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB42_RS03590	COG3135	benzoate transporter
FYB42_RS03635	COG5444	nuclease activity
FYB42_RS03755	COG3468	outer membrane autotransporter barrel domain protein
FYB42_RS03820	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FYB42_RS03865	COG0489	protein tyrosine kinase activity
FYB42_RS03910	COG2081	HI0933 family
FYB42_RS03915	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FYB42_RS03930	COG0509	glycine decarboxylation via glycine cleavage system
FYB42_RS03955	COG1024	Enoyl-CoA hydratase
FYB42_RS03975	COG4172	Belongs to the ABC transporter superfamily
FYB42_RS03980	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS03985	COG0601	transmembrane transport
FYB42_RS03990	COG0747	negative chemotaxis
FYB42_RS04000	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB42_RS04030	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FYB42_RS04035	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FYB42_RS04050	COG0438	transferase activity, transferring glycosyl groups
FYB42_RS04065	COG0438	transferase activity, transferring glycosyl groups
FYB42_RS04070	COG0438	transferase activity, transferring glycosyl groups
FYB42_RS04075	COG0166	Belongs to the GPI family
FYB42_RS04090	COG0277	FAD linked oxidase domain protein
FYB42_RS04095	COG0745	RESPONSE REGULATOR receiver
FYB42_RS04100	COG0642	Histidine kinase
FYB42_RS04105	COG1368	sulfuric ester hydrolase activity
FYB42_RS04190	COG0012	GTP binding
FYB42_RS04205	COG0745	RESPONSE REGULATOR receiver
FYB42_RS04210	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS04215	COG1309	transcriptional regulator
FYB42_RS04225	COG2814	Major facilitator Superfamily
FYB42_RS04250	COG0281	malic enzyme
FYB42_RS04250	COG0280	phosphate acetyltransferase
FYB42_RS04260	COG0601	transmembrane transport
FYB42_RS04265	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS04270	COG4172	Belongs to the ABC transporter superfamily
FYB42_RS04285	COG0583	DNA-binding transcription factor activity
FYB42_RS04300	COG0640	Transcriptional regulator
FYB42_RS04315	COG3135	benzoate transporter
FYB42_RS04320	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYB42_RS04325	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
FYB42_RS04330	COG0742	ribosomal rna small subunit methyltransferase
FYB42_RS04345	COG3639	organic phosphonate transmembrane transporter activity
FYB42_RS04350	COG3639	organic phosphonate transmembrane transporter activity
FYB42_RS04380	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
FYB42_RS04385	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYB42_RS04395	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FYB42_RS04400	COG1546	Belongs to the CinA family
FYB42_RS04400	COG1058	Belongs to the CinA family
FYB42_RS04405	COG0284	orotidine-5'-phosphate decarboxylase activity
FYB42_RS04410	COG1252	NADH dehydrogenase
FYB42_RS04435	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
FYB42_RS04455	COG1053	succinate dehydrogenase
FYB42_RS04465	COG0583	DNA-binding transcription factor activity
FYB42_RS04470	COG1053	succinate dehydrogenase
FYB42_RS04475	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS04480	COG1414	Transcriptional regulator
FYB42_RS04495	COG1335	isochorismatase
FYB42_RS04510	COG0405	Gamma-glutamyltransferase
FYB42_RS04525	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS04530	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS04535	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS04540	COG0583	DNA-binding transcription factor activity
FYB42_RS04565	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS04570	COG0583	DNA-binding transcription factor activity
FYB42_RS04575	COG2199	diguanylate cyclase activity
FYB42_RS04630	COG1024	Enoyl-CoA hydratase
FYB42_RS04630	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB42_RS04635	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS04650	COG1024	Enoyl-CoA hydratase
FYB42_RS04655	COG1024	Enoyl-CoA hydratase
FYB42_RS04660	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS04665	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS04705	COG3685	Protein conserved in bacteria
FYB42_RS04715	COG0387	Pfam Sodium calcium exchanger
FYB42_RS04720	COG3795	YCII-related domain
FYB42_RS04725	COG2188	Transcriptional regulator
FYB42_RS04750	COG0154	amidase activity
FYB42_RS04755	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS04760	COG1024	Enoyl-CoA hydratase
FYB42_RS04770	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS04785	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS04790	COG1414	Transcriptional regulator
FYB42_RS04805	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB42_RS04810	COG0251	oxidation-reduction process
FYB42_RS04815	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB42_RS04835	COG1902	pentaerythritol trinitrate reductase activity
FYB42_RS04840	COG0583	DNA-binding transcription factor activity
FYB42_RS04850	COG0590	tRNA wobble adenosine to inosine editing
FYB42_RS04855	COG2807	transmembrane transport
FYB42_RS04860	COG0307	riboflavin synthase, alpha
FYB42_RS04865	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS04870	COG1522	sequence-specific DNA binding
FYB42_RS04880	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS04890	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS04930	COG1418	mRNA catabolic process
FYB42_RS04940	COG1335	isochorismatase
FYB42_RS04965	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB42_RS04970	COG2274	protein secretion by the type I secretion system
FYB42_RS04980	COG1538	Outer membrane efflux protein
FYB42_RS04985	COG0493	'glutamate synthase
FYB42_RS04985	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYB42_RS04995	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FYB42_RS05005	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS05015	COG1309	transcriptional regulator
FYB42_RS05020	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS05025	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS05030	COG2076	Multidrug Resistance protein
FYB42_RS05035	COG1309	transcriptional regulator
FYB42_RS05055	COG0840	transmembrane signaling receptor activity
FYB42_RS05070	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB42_RS05095	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS05105	COG1024	Enoyl-CoA hydratase
FYB42_RS05115	COG2203	Gaf domain
FYB42_RS05115	COG2199	diguanylate cyclase activity
FYB42_RS05135	COG0154	amidase activity
FYB42_RS05140	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB42_RS05140	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB42_RS05165	COG3945	hemerythrin HHE cation binding domain
FYB42_RS05180	COG2169	Transcriptional regulator
FYB42_RS05180	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FYB42_RS05200	COG1271	oxidase subunit
FYB42_RS05205	COG1294	oxidase, subunit
FYB42_RS05215	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB42_RS05245	COG0596	Alpha beta hydrolase
FYB42_RS05250	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FYB42_RS05285	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FYB42_RS05290	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FYB42_RS05300	COG2070	2-Nitropropane dioxygenase
FYB42_RS05315	COG1917	Cupin 2, conserved barrel domain protein
FYB42_RS05315	COG2207	Transcriptional regulator
FYB42_RS05335	COG2900	Belongs to the SlyX family
FYB42_RS05345	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB42_RS05375	COG0583	DNA-binding transcription factor activity
FYB42_RS05380	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS05390	COG0583	DNA-binding transcription factor activity
FYB42_RS05415	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
FYB42_RS05425	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB42_RS05430	COG1845	cytochrome c oxidase, subunit III
FYB42_RS05435	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FYB42_RS05440	COG0640	Transcriptional regulator
FYB42_RS05505	COG1666	GTP binding
FYB42_RS05530	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS05540	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FYB42_RS05545	COG1845	cytochrome c oxidase, subunit III
FYB42_RS05550	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB42_RS05555	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FYB42_RS05560	COG0477	Major facilitator Superfamily
FYB42_RS05575	COG5006	permease, DMT superfamily
FYB42_RS05595	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FYB42_RS05610	COG3383	formate dehydrogenase (NAD+) activity
FYB42_RS05630	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FYB42_RS05635	COG0303	'Molybdopterin
FYB42_RS05640	COG0521	Mo-molybdopterin cofactor biosynthetic process
FYB42_RS05650	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
FYB42_RS05665	COG0412	Dienelactone hydrolase
FYB42_RS05675	COG0678	peroxiredoxin activity
FYB42_RS05685	COG0697	spore germination
FYB42_RS05730	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FYB42_RS05735	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
FYB42_RS05740	COG1335	isochorismatase
FYB42_RS05745	COG0523	cobalamin synthesis protein
FYB42_RS05750	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS05765	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS05775	COG1802	Transcriptional regulator
FYB42_RS05795	COG0667	Aldo Keto reductase
FYB42_RS05805	COG4535	Mg2 and Co2 transporter CorC
FYB42_RS05815	COG1702	phosphate starvation-inducible protein PhoH
FYB42_RS05830	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYB42_RS05835	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYB42_RS05840	COG1862	Preprotein translocase
FYB42_RS05845	COG0343	queuine tRNA-ribosyltransferase activity
FYB42_RS05855	COG2027	D-alanyl-D-alanine carboxypeptidase
FYB42_RS05900	COG0741	lytic transglycosylase activity
FYB42_RS05905	COG0436	Aminotransferase
FYB42_RS05915	COG0281	malic enzyme
FYB42_RS05915	COG0280	phosphate acetyltransferase
FYB42_RS05925	COG2732	(Barnase) inhibitor
FYB42_RS05930	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FYB42_RS05935	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FYB42_RS05940	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FYB42_RS05950	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FYB42_RS05955	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FYB42_RS05970	COG0625	glutathione transferase activity
FYB42_RS06000	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
FYB42_RS06010	COG0306	phosphate transporter
FYB42_RS06015	COG0521	Mo-molybdopterin cofactor biosynthetic process
FYB42_RS06025	COG0739	heme binding
FYB42_RS06035	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FYB42_RS06085	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
FYB42_RS06110	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FYB42_RS06115	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FYB42_RS06120	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FYB42_RS06125	COG0009	L-threonylcarbamoyladenylate synthase
FYB42_RS06130	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB42_RS06135	COG1414	Transcriptional regulator
FYB42_RS06150	COG0765	amino acid transport
FYB42_RS06155	COG1126	abc transporter atp-binding protein
FYB42_RS06175	COG0028	Belongs to the TPP enzyme family
FYB42_RS06180	COG0583	DNA-binding transcription factor activity
FYB42_RS06185	COG4974	Belongs to the 'phage' integrase family
FYB42_RS06190	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FYB42_RS06195	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
FYB42_RS06205	COG1686	Belongs to the peptidase S11 family
FYB42_RS06215	COG2814	Major facilitator Superfamily
FYB42_RS06225	COG1074	ATP-dependent DNA helicase activity
FYB42_RS06235	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FYB42_RS06250	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS06255	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FYB42_RS06265	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS06275	COG0505	Belongs to the CarA family
FYB42_RS06280	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FYB42_RS06310	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB42_RS06340	COG3976	FMN-binding domain protein
FYB42_RS06340	COG1053	succinate dehydrogenase
FYB42_RS06345	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS06375	COG3842	ATPase activity
FYB42_RS06385	COG0395	ABC-type sugar transport system, permease component
FYB42_RS06420	COG0420	3'-5' exonuclease activity
FYB42_RS06435	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FYB42_RS06435	COG2111	Na H antiporter
FYB42_RS06440	COG1006	Multisubunit Na H antiporter MnhC subunit
FYB42_RS06445	COG0651	ATP synthesis coupled electron transport
FYB42_RS06450	COG1863	multisubunit Na H antiporter MnhE subunit
FYB42_RS06455	COG2212	antiporter activity
FYB42_RS06475	COG0590	tRNA wobble adenosine to inosine editing
FYB42_RS06480	COG1619	proteins homologs of microcin C7 resistance protein MccF
FYB42_RS06485	COG1024	Enoyl-CoA hydratase
FYB42_RS06490	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB42_RS06500	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB42_RS06505	COG0488	(ABC) transporter
FYB42_RS06535	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB42_RS06540	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FYB42_RS06545	COG2252	PERMEase
FYB42_RS06555	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
FYB42_RS06595	COG0789	Transcriptional regulator
FYB42_RS06605	COG0678	peroxiredoxin activity
FYB42_RS06605	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYB42_RS06615	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
FYB42_RS06620	COG0584	glycerophosphoryl diester phosphodiesterase
FYB42_RS06625	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYB42_RS06635	COG4181	ATPase activity
FYB42_RS06690	COG2197	response regulator
FYB42_RS06695	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYB42_RS06695	COG3210	domain, Protein
FYB42_RS06695	COG3064	Membrane
FYB42_RS06705	COG3121	Chaperone
FYB42_RS06710	COG3188	usher protein
FYB42_RS06715	COG3539	Fimbrial protein
FYB42_RS06720	COG2831	hemolysin activation secretion protein
FYB42_RS06735	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB42_RS06760	COG0583	DNA-binding transcription factor activity
FYB42_RS06780	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB42_RS06785	COG0765	amino acid transport
FYB42_RS06790	COG1126	abc transporter atp-binding protein
FYB42_RS06795	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FYB42_RS06800	COG1758	RNA polymerase activity
FYB42_RS06805	COG0194	GDP metabolic process
FYB42_RS06810	COG3258	Cytochrome c
FYB42_RS06815	COG2863	cytochrome
FYB42_RS06820	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS06825	COG0791	NLP P60 protein
FYB42_RS06830	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FYB42_RS06875	COG5001	Diguanylate cyclase
FYB42_RS06875	COG5002	protein histidine kinase activity
FYB42_RS06885	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FYB42_RS06890	COG0174	glutamine synthetase
FYB42_RS06900	COG2204	response regulator
FYB42_RS06905	COG0583	DNA-binding transcription factor activity
FYB42_RS06910	COG1741	Belongs to the pirin family
FYB42_RS06915	COG1741	Belongs to the pirin family
FYB42_RS06920	COG3842	ATPase activity
FYB42_RS06930	COG1840	ABC-type Fe3 transport system, periplasmic component
FYB42_RS06940	COG0583	DNA-binding transcription factor activity
FYB42_RS06945	COG2814	Major facilitator Superfamily
FYB42_RS06950	COG0656	L-ascorbic acid biosynthetic process
FYB42_RS06955	COG3468	outer membrane autotransporter barrel domain protein
FYB42_RS06965	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FYB42_RS06970	COG0583	DNA-binding transcription factor activity
FYB42_RS06985	COG0783	Belongs to the Dps family
FYB42_RS07000	COG0463	Glycosyl transferase, family 2
FYB42_RS07020	COG0438	transferase activity, transferring glycosyl groups
FYB42_RS07035	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FYB42_RS07055	COG0300	oxidoreductase activity
FYB42_RS07070	COG3321	synthase
FYB42_RS07070	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS07070	COG0604	alcohol dehydrogenase
FYB42_RS07090	COG0395	ABC-type sugar transport system, permease component
FYB42_RS07095	COG1175	transmembrane transport
FYB42_RS07100	COG1653	transport
FYB42_RS07110	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
FYB42_RS07120	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB42_RS07140	COG1794	racemase activity, acting on amino acids and derivatives
FYB42_RS07145	COG0625	glutathione transferase activity
FYB42_RS07150	COG2133	pyrroloquinoline quinone binding
FYB42_RS07175	COG2363	Small membrane protein
FYB42_RS07190	COG1464	Belongs to the NlpA lipoprotein family
FYB42_RS07200	COG0688	phosphatidylethanolamine metabolic process
FYB42_RS07215	COG0095	Lipoate-protein ligase
FYB42_RS07230	COG0625	glutathione transferase activity
FYB42_RS07235	COG0386	Belongs to the glutathione peroxidase family
FYB42_RS07275	COG2259	Doxx family
FYB42_RS07290	COG0667	Aldo Keto reductase
FYB42_RS07335	COG1640	4-alpha-glucanotransferase
FYB42_RS07385	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FYB42_RS07410	COG0747	negative chemotaxis
FYB42_RS07415	COG0601	transmembrane transport
FYB42_RS07420	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS07425	COG4172	Belongs to the ABC transporter superfamily
FYB42_RS07480	COG0425	Belongs to the sulfur carrier protein TusA family
FYB42_RS07505	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FYB42_RS07515	COG0642	Histidine kinase
FYB42_RS07535	COG0105	UTP biosynthetic process
FYB42_RS07560	COG2976	Protein conserved in bacteria
FYB42_RS07565	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYB42_RS07570	COG1160	GTP binding
FYB42_RS07580	COG1923	regulation of RNA biosynthetic process
FYB42_RS07585	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FYB42_RS07590	COG0330	HflC and HflK could
FYB42_RS07595	COG0330	HflC and HflK could
FYB42_RS07610	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
FYB42_RS07615	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FYB42_RS07625	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FYB42_RS07685	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB42_RS07690	COG0683	leucine binding
FYB42_RS07695	COG4638	Rieske (2fe-2S)
FYB42_RS07705	COG1024	Enoyl-CoA hydratase
FYB42_RS07715	COG0633	Ferredoxin
FYB42_RS07720	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS07735	COG0183	Belongs to the thiolase family
FYB42_RS07745	COG4692	amylo-alpha-1,6-glucosidase activity
FYB42_RS07750	COG0583	DNA-binding transcription factor activity
FYB42_RS07770	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS07775	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS07795	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FYB42_RS07805	COG3829	transcription factor binding
FYB42_RS07835	COG0833	amino acid
FYB42_RS07855	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS07860	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FYB42_RS07865	COG0439	Biotin carboxylase
FYB42_RS07880	COG0395	ABC-type sugar transport system, permease component
FYB42_RS07885	COG1176	ABC-type spermidine putrescine transport system, permease component I
FYB42_RS07900	COG1414	Transcriptional regulator
FYB42_RS07905	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS07915	COG2188	Transcriptional regulator
FYB42_RS07940	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS07945	COG0583	DNA-binding transcription factor activity
FYB42_RS07965	COG1172	Belongs to the binding-protein-dependent transport system permease family
FYB42_RS07975	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB42_RS07985	COG1228	amidohydrolase
FYB42_RS07990	COG2267	carboxylic ester hydrolase activity
FYB42_RS08015	COG0861	Integral membrane protein TerC family
FYB42_RS08020	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS08035	COG1262	PFAM Formylglycine-generating sulfatase enzyme
FYB42_RS08075	COG3119	arylsulfatase activity
FYB42_RS08095	COG2197	response regulator
FYB42_RS08105	COG2944	sequence-specific DNA binding
FYB42_RS08110	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
FYB42_RS08115	COG0625	glutathione transferase activity
FYB42_RS08130	COG3119	arylsulfatase activity
FYB42_RS08145	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS08150	COG0183	Belongs to the thiolase family
FYB42_RS08165	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS08170	COG0583	DNA-binding transcription factor activity
FYB42_RS08175	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS08185	COG1024	Enoyl-CoA hydratase
FYB42_RS08195	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS08200	COG1024	Enoyl-CoA hydratase
FYB42_RS08200	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB42_RS08210	COG1454	alcohol dehydrogenase
FYB42_RS08215	COG0824	Thioesterase
FYB42_RS08240	COG0431	NADPH-dependent FMN reductase
FYB42_RS08270	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS08275	COG0583	DNA-binding transcription factor activity
FYB42_RS08300	COG0330	HflC and HflK could
FYB42_RS08320	COG3043	anaerobic respiration
FYB42_RS08325	COG3005	denitrification pathway
FYB42_RS08360	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB42_RS08390	COG4948	Mandelate Racemase Muconate Lactonizing
FYB42_RS08395	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS08425	COG0583	DNA-binding transcription factor activity
FYB42_RS08445	COG1695	Transcriptional regulator
FYB42_RS08455	COG3568	Endonuclease Exonuclease Phosphatase
FYB42_RS08465	COG0392	lysyltransferase activity
FYB42_RS08480	COG1058	Belongs to the CinA family
FYB42_RS08480	COG1546	Belongs to the CinA family
FYB42_RS08500	COG4575	ribosome binding
FYB42_RS08505	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
FYB42_RS08515	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS08570	COG0028	Belongs to the TPP enzyme family
FYB42_RS08575	COG2204	response regulator
FYB42_RS08580	COG2204	response regulator
FYB42_RS08625	COG0861	Integral membrane protein TerC family
FYB42_RS08630	COG0861	Integral membrane protein TerC family
FYB42_RS08635	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FYB42_RS08640	COG0045	succinate-CoA ligase (ADP-forming) activity
FYB42_RS08660	COG2137	regulation of response to DNA damage stimulus
FYB42_RS08665	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
FYB42_RS08685	COG1024	Enoyl-CoA hydratase
FYB42_RS08685	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB42_RS08690	COG3842	ATPase activity
FYB42_RS08705	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS08720	COG0183	Belongs to the thiolase family
FYB42_RS08725	COG0583	DNA-binding transcription factor activity
FYB42_RS08730	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS08745	COG0540	Belongs to the ATCase OTCase family
FYB42_RS08780	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB42_RS08795	COG1522	sequence-specific DNA binding
FYB42_RS08805	COG2367	Beta-lactamase
FYB42_RS08820	COG0500	methyltransferase
FYB42_RS08860	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
FYB42_RS08865	COG0291	Belongs to the bacterial ribosomal protein bL35 family
FYB42_RS08885	COG0004	ammonium transporteR
FYB42_RS08900	COG1309	transcriptional regulator
FYB42_RS08935	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYB42_RS08935	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYB42_RS08935	COG0506	proline dehydrogenase activity
FYB42_RS08945	COG3008	intermembrane lipid transfer
FYB42_RS08945	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FYB42_RS08950	COG2995	paraquat-inducible protein a
FYB42_RS08955	COG0542	response to heat
FYB42_RS08960	COG4953	penicillin-binding protein 1C
FYB42_RS08975	COG1278	Cold shock
FYB42_RS08985	COG0183	Belongs to the thiolase family
FYB42_RS08990	COG0038	chloride channel
FYB42_RS08995	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FYB42_RS09005	COG0811	peptide transport
FYB42_RS09010	COG0848	biopolymer transport protein
FYB42_RS09020	COG2835	tetraacyldisaccharide 4'-kinase activity
FYB42_RS09040	COG0728	peptidoglycan biosynthetic process
FYB42_RS09050	COG0268	Binds directly to 16S ribosomal RNA
FYB42_RS09070	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYB42_RS09075	COG2186	Transcriptional regulator
FYB42_RS09095	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FYB42_RS09105	COG0583	DNA-binding transcription factor activity
FYB42_RS09120	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FYB42_RS09130	COG3158	transport of potassium into the cell
FYB42_RS09135	COG0642	Histidine kinase
FYB42_RS09170	COG0776	regulation of translation
FYB42_RS09175	COG3128	pkhd-type hydroxylase
FYB42_RS09185	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYB42_RS09190	COG0557	exoribonuclease II activity
FYB42_RS09215	COG0679	Auxin Efflux Carrier
FYB42_RS09225	COG0069	glutamate synthase activity
FYB42_RS09230	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYB42_RS09240	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
FYB42_RS09280	COG3706	GGDEF domain
FYB42_RS09315	COG3909	cytochrome
FYB42_RS09320	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FYB42_RS09325	COG0625	glutathione transferase activity
FYB42_RS09330	COG0730	response to heat
FYB42_RS09340	COG0583	DNA-binding transcription factor activity
FYB42_RS09380	COG2819	hydrolase of the alpha beta superfamily
FYB42_RS09385	COG0247	lactate metabolic process
FYB42_RS09395	COG0277	FAD linked oxidase domain protein
FYB42_RS09400	COG0277	FAD linked oxidase domain protein
FYB42_RS09405	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYB42_RS09405	COG3210	domain, Protein
FYB42_RS09405	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYB42_RS09405	COG3210	domain, Protein
FYB42_RS09405	COG3064	Membrane
FYB42_RS09405	COG3064	Membrane
FYB42_RS09410	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYB42_RS09415	COG0312	modulator of DNA gyrase
FYB42_RS09435	COG0308	aminopeptidase N
FYB42_RS09440	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
FYB42_RS09460	COG0436	Aminotransferase
FYB42_RS09465	COG3737	Protein of unknown function (DUF498/DUF598)
FYB42_RS09470	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FYB42_RS09475	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
FYB42_RS09480	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FYB42_RS09490	COG0305	Participates in initiation and elongation during chromosome replication
FYB42_RS09510	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
FYB42_RS09515	COG2965	DNA replication, synthesis of RNA primer
FYB42_RS09520	COG0360	Binds together with S18 to 16S ribosomal RNA
FYB42_RS09525	COG1469	GTP cyclohydrolase I activity
FYB42_RS09535	COG0142	geranyltranstransferase activity
FYB42_RS09540	COG1722	exodeoxyribonuclease VII activity
FYB42_RS09550	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS09585	COG1840	ABC-type Fe3 transport system, periplasmic component
FYB42_RS09590	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYB42_RS09595	COG1178	ABC-type Fe3 transport system permease component
FYB42_RS09600	COG3842	ATPase activity
FYB42_RS09605	COG0583	DNA-binding transcription factor activity
FYB42_RS09625	COG0501	Belongs to the peptidase M48B family
FYB42_RS09635	COG0697	spore germination
FYB42_RS09645	COG1846	Transcriptional regulator
FYB42_RS09665	COG0473	3-isopropylmalate dehydrogenase activity
FYB42_RS09675	COG0747	negative chemotaxis
FYB42_RS09685	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS09695	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FYB42_RS09720	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS09730	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB42_RS09735	COG0433	COG0433 Predicted ATPase
FYB42_RS09745	COG0151	Belongs to the GarS family
FYB42_RS09760	COG0799	negative regulation of ribosome biogenesis
FYB42_RS09775	COG3468	outer membrane autotransporter barrel domain protein
FYB42_RS09815	COG0385	Bile acid
FYB42_RS09820	COG0427	acetyl-CoA hydrolase
FYB42_RS09825	COG0583	DNA-binding transcription factor activity
FYB42_RS09830	COG3264	Mechanosensitive ion channel
FYB42_RS09830	COG1511	domain protein
FYB42_RS09845	COG0730	response to heat
FYB42_RS09850	COG0697	spore germination
FYB42_RS09885	COG2885	chlorophyll binding
FYB42_RS09905	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FYB42_RS09910	COG3384	dioxygenase
FYB42_RS09925	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
FYB42_RS09930	COG3474	cytochrome
FYB42_RS09995	COG4964	Belongs to the GSP D family
FYB42_RS10045	COG4172	Belongs to the ABC transporter superfamily
FYB42_RS10050	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS10055	COG0601	transmembrane transport
FYB42_RS10060	COG0747	negative chemotaxis
FYB42_RS10070	COG0598	Magnesium transport protein CorA
FYB42_RS10090	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FYB42_RS10100	COG0483	inositol monophosphate 1-phosphatase activity
FYB42_RS10125	COG1045	serine acetyltransferase
FYB42_RS10130	COG0166	Belongs to the GPI family
FYB42_RS10145	COG2197	response regulator
FYB42_RS10160	COG0183	Belongs to the thiolase family
FYB42_RS10175	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB42_RS10175	COG1024	Enoyl-CoA hydratase
FYB42_RS10180	COG0183	Belongs to the thiolase family
FYB42_RS10190	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS10200	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS10215	COG1017	nitric oxide dioxygenase activity
FYB42_RS10215	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYB42_RS10220	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYB42_RS10220	COG2010	Cytochrome c
FYB42_RS10225	COG1335	isochorismatase
FYB42_RS10230	COG2309	aminopeptidase activity
FYB42_RS10235	COG0596	Alpha beta hydrolase
FYB42_RS10245	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYB42_RS10250	COG2080	2 iron, 2 sulfur cluster binding
FYB42_RS10280	COG1846	Transcriptional regulator
FYB42_RS10300	COG1649	PFAM Uncharacterised BCR, COG1649
FYB42_RS10300	COG0726	polysaccharide deacetylase
FYB42_RS10305	COG1215	transferase activity, transferring glycosyl groups
FYB42_RS10315	COG1902	pentaerythritol trinitrate reductase activity
FYB42_RS10340	COG0251	oxidation-reduction process
FYB42_RS10350	COG1832	CoA-binding protein
FYB42_RS10355	COG1414	Transcriptional regulator
FYB42_RS10360	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYB42_RS10360	COG1902	pentaerythritol trinitrate reductase activity
FYB42_RS10370	COG3842	ATPase activity
FYB42_RS10395	COG0583	DNA-binding transcription factor activity
FYB42_RS10405	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS10415	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYB42_RS10430	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB42_RS10430	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB42_RS10455	COG0527	aspartate kinase activity
FYB42_RS10465	COG0825	malonyl-CoA metabolic process
FYB42_RS10480	COG3063	Type IV pilus biogenesis stability protein PilW
FYB42_RS10500	COG1253	flavin adenine dinucleotide binding
FYB42_RS10505	COG0483	inositol monophosphate 1-phosphatase activity
FYB42_RS10525	COG0668	transmembrane transport
FYB42_RS10560	COG3360	Dodecin
FYB42_RS10570	COG2850	peptidyl-arginine hydroxylation
FYB42_RS10580	COG3539	Fimbrial protein
FYB42_RS10585	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
FYB42_RS10590	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB42_RS10595	COG1994	Peptidase M50
FYB42_RS10600	COG0009	L-threonylcarbamoyladenylate synthase
FYB42_RS10605	COG2321	neutral zinc metallopeptidase
FYB42_RS10645	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYB42_RS10650	COG1366	Belongs to the anti-sigma-factor antagonist family
FYB42_RS10660	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FYB42_RS10670	COG2770	Histidine kinase
FYB42_RS10670	COG2208	phosphoserine phosphatase activity
FYB42_RS10705	COG4792	protein secretion
FYB42_RS10710	COG4791	protein targeting
FYB42_RS10715	COG4794	Type iii secretion
FYB42_RS10755	COG4669	(LipO)protein
FYB42_RS10855	COG0251	oxidation-reduction process
FYB42_RS10895	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS10945	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB42_RS10960	COG0583	DNA-binding transcription factor activity
FYB42_RS10965	COG3971	2-oxopent-4-enoate hydratase activity
FYB42_RS10995	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB42_RS11010	COG0511	ligase activity, forming carbon-carbon bonds
FYB42_RS11020	COG0439	Biotin carboxylase
FYB42_RS11025	COG2188	Transcriptional regulator
FYB42_RS11050	COG0511	ligase activity, forming carbon-carbon bonds
FYB42_RS11060	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
FYB42_RS11070	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS11080	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
FYB42_RS11105	COG1132	(ABC) transporter
FYB42_RS11115	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FYB42_RS11155	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FYB42_RS11190	COG0583	DNA-binding transcription factor activity
FYB42_RS11210	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS11240	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB42_RS11255	COG1126	abc transporter atp-binding protein
FYB42_RS11260	COG0765	amino acid transport
FYB42_RS11265	COG4597	amino acid ABC transporter
FYB42_RS11270	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB42_RS11275	COG1473	amidohydrolase
FYB42_RS11280	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB42_RS11285	COG1522	sequence-specific DNA binding
FYB42_RS11295	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB42_RS11305	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB42_RS11310	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB42_RS11315	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB42_RS11335	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB42_RS11340	COG0154	amidase activity
FYB42_RS11350	COG1137	ATPase activity
FYB42_RS11380	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB42_RS11385	COG2072	flavoprotein involved in K transport
FYB42_RS11420	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB42_RS11450	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB42_RS11550	COG0248	Ppx GppA phosphatase
FYB42_RS11570	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FYB42_RS11580	COG1534	Rna-binding protein
FYB42_RS11590	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYB42_RS11595	COG0840	transmembrane signaling receptor activity
FYB42_RS11600	COG2233	PERMEase
FYB42_RS11615	COG3842	ATPase activity
FYB42_RS11625	COG0406	alpha-ribazole phosphatase activity
FYB42_RS11630	COG4221	oxidoreductase activity
FYB42_RS11645	COG0084	hydrolase, TatD family'
FYB42_RS11650	COG1136	(ABC) transporter
FYB42_RS11665	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FYB42_RS11675	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS11695	COG1022	Amp-dependent synthetase and ligase
FYB42_RS11725	COG1024	Enoyl-CoA hydratase
FYB42_RS11740	COG0633	Ferredoxin
FYB42_RS11755	COG0316	Belongs to the HesB IscA family
FYB42_RS11760	COG0822	iron-sulfur transferase activity
FYB42_RS11765	COG1104	cysteine desulfurase activity
FYB42_RS11775	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FYB42_RS11795	COG3468	outer membrane autotransporter barrel domain protein
FYB42_RS11805	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FYB42_RS11820	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS11825	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS11840	COG1024	Enoyl-CoA hydratase
FYB42_RS11855	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS11860	COG0583	DNA-binding transcription factor activity
FYB42_RS11865	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FYB42_RS11875	COG0740	serine-type endopeptidase activity
FYB42_RS11890	COG1278	Cold shock
FYB42_RS11900	COG1278	Cold shock
FYB42_RS11930	COG0436	Aminotransferase
FYB42_RS11945	COG2890	protein-(glutamine-N5) methyltransferase activity
FYB42_RS11950	COG0488	(ABC) transporter
FYB42_RS11955	COG4771	TonB-dependent receptor
FYB42_RS11960	COG0210	DNA helicase
FYB42_RS11975	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYB42_RS11975	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FYB42_RS11980	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FYB42_RS11985	COG0196	riboflavin kinase activity
FYB42_RS11995	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
FYB42_RS12000	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FYB42_RS12010	COG1522	sequence-specific DNA binding
FYB42_RS12035	COG1126	abc transporter atp-binding protein
FYB42_RS12040	COG0765	amino acid transport
FYB42_RS12045	COG0765	amino acid transport
FYB42_RS12050	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB42_RS12060	COG2423	ornithine cyclodeaminase activity
FYB42_RS12065	COG1764	response to oxidative stress
FYB42_RS12075	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FYB42_RS12080	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYB42_RS12095	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
FYB42_RS12100	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FYB42_RS12105	COG2197	response regulator
FYB42_RS12115	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FYB42_RS12175	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB42_RS12190	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FYB42_RS12215	COG1122	ATPase activity
FYB42_RS12245	COG0437	4 iron, 4 sulfur cluster binding
FYB42_RS12250	COG0243	molybdopterin cofactor binding
FYB42_RS12250	COG3383	formate dehydrogenase (NAD+) activity
FYB42_RS12280	COG0489	protein tyrosine kinase activity
FYB42_RS12285	COG0746	molybdenum cofactor guanylyltransferase activity
FYB42_RS12290	COG0303	'Molybdopterin
FYB42_RS12295	COG1763	Mo-molybdopterin cofactor biosynthetic process
FYB42_RS12310	COG5001	Diguanylate cyclase
FYB42_RS12315	COG2205	protein histidine kinase activity
FYB42_RS12320	COG0745	RESPONSE REGULATOR receiver
FYB42_RS12335	COG1295	ribonuclease BN
FYB42_RS12345	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FYB42_RS12380	COG4964	Belongs to the GSP D family
FYB42_RS12420	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB42_RS12455	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FYB42_RS12460	COG3395	kinase activity
FYB42_RS12500	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB42_RS12505	COG2358	TRAP transporter, solute receptor (TAXI family
FYB42_RS12515	COG2311	Membrane
FYB42_RS12540	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FYB42_RS12555	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FYB42_RS12560	COG1760	l-serine dehydratase
FYB42_RS12565	COG1283	sodium-dependent phosphate transmembrane transporter activity
FYB42_RS12570	COG0412	Dienelactone hydrolase
FYB42_RS12585	COG1611	Belongs to the LOG family
FYB42_RS12620	COG0195	Participates in both transcription termination and antitermination
FYB42_RS12620	COG2251	uridine kinase activity
FYB42_RS12630	COG1187	pseudouridine synthase activity
FYB42_RS12635	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
FYB42_RS12645	COG0583	DNA-binding transcription factor activity
FYB42_RS12655	COG0523	cobalamin synthesis protein
FYB42_RS12675	COG0625	glutathione transferase activity
FYB42_RS12680	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
FYB42_RS12685	COG1047	Peptidyl-prolyl cis-trans
FYB42_RS12745	COG2304	oxidoreductase activity
FYB42_RS12765	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FYB42_RS12770	COG1562	ergosterol biosynthetic process
FYB42_RS12775	COG1562	ergosterol biosynthetic process
FYB42_RS12780	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
FYB42_RS12780	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
FYB42_RS12800	COG1131	(ABC) transporter
FYB42_RS12835	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
FYB42_RS12850	COG5564	TIM-barrel signal transduction protein
FYB42_RS12865	COG3468	outer membrane autotransporter barrel domain protein
FYB42_RS12875	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYB42_RS12890	COG0494	nUDIX hydrolase
FYB42_RS12895	COG3530	Putative quorum-sensing-regulated virulence factor
FYB42_RS12905	COG1595	DNA-templated transcription, initiation
FYB42_RS12910	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB42_RS12945	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB42_RS12950	COG0765	amino acid transport
FYB42_RS12955	COG0765	amino acid transport
FYB42_RS12985	COG2841	Protein conserved in bacteria
FYB42_RS12990	COG2814	Major facilitator Superfamily
FYB42_RS13005	COG0628	permease
FYB42_RS13010	COG0842	Transport permease protein
FYB42_RS13015	COG1131	(ABC) transporter
FYB42_RS13060	COG3278	Belongs to the heme-copper respiratory oxidase family
FYB42_RS13090	COG4106	trans-aconitate 2-methyltransferase activity
FYB42_RS13090	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FYB42_RS13095	COG1380	Effector of murein hydrolase LrgA
FYB42_RS13100	COG1346	cytolysis
FYB42_RS13110	COG2224	Isocitrate lyase
FYB42_RS13125	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FYB42_RS13145	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
FYB42_RS13160	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB42_RS13185	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FYB42_RS13200	COG2032	superoxide dismutase activity
FYB42_RS13210	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS13215	COG1024	Enoyl-CoA hydratase
FYB42_RS13225	COG1802	Transcriptional regulator
FYB42_RS13235	COG0183	Belongs to the thiolase family
FYB42_RS13240	COG1942	4-Oxalocrotonate Tautomerase
FYB42_RS13250	COG4176	ABC-type proline glycine betaine transport system permease component
FYB42_RS13260	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FYB42_RS13265	COG2814	Major facilitator Superfamily
FYB42_RS13270	COG0227	Belongs to the bacterial ribosomal protein bL28 family
FYB42_RS13275	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FYB42_RS13295	COG2814	Major facilitator Superfamily
FYB42_RS13325	COG0154	amidase activity
FYB42_RS13330	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB42_RS13370	COG1530	ribonuclease E activity
FYB42_RS13375	COG0077	Prephenate dehydratase
FYB42_RS13390	COG1132	(ABC) transporter
FYB42_RS13395	COG0859	PFAM glycosyl transferase family 9
FYB42_RS13420	COG2194	sulfuric ester hydrolase activity
FYB42_RS13425	COG0438	transferase activity, transferring glycosyl groups
FYB42_RS13430	COG0463	Glycosyl transferase, family 2
FYB42_RS13435	COG0726	polysaccharide deacetylase
FYB42_RS13440	COG0438	transferase activity, transferring glycosyl groups
FYB42_RS13455	COG1643	Atp-dependent helicase
FYB42_RS13460	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FYB42_RS13460	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
FYB42_RS13465	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
FYB42_RS13475	COG0704	Plays a role in the regulation of phosphate uptake
FYB42_RS13485	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS13510	COG1177	transmembrane transport
FYB42_RS13515	COG1176	ABC-type spermidine putrescine transport system, permease component I
FYB42_RS13520	COG3842	ATPase activity
FYB42_RS13525	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FYB42_RS13540	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
FYB42_RS13545	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB42_RS13555	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB42_RS13555	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB42_RS13560	COG3539	Fimbrial protein
FYB42_RS13565	COG3539	Fimbrial protein
FYB42_RS13580	COG2050	protein possibly involved in aromatic compounds catabolism
FYB42_RS13585	COG1024	Enoyl-CoA hydratase
FYB42_RS13590	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS13595	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYB42_RS13600	COG2151	metal-sulfur cluster biosynthetic enzyme
FYB42_RS13605	COG3396	Phenylacetate-CoA oxygenase
FYB42_RS13610	COG3460	Phenylacetate-CoA oxygenase
FYB42_RS13615	COG3396	Phenylacetate-CoA oxygenase
FYB42_RS13630	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
FYB42_RS13635	COG0501	Belongs to the peptidase M48B family
FYB42_RS13640	COG1162	GTPase activity
FYB42_RS13645	COG0667	Aldo Keto reductase
FYB42_RS13655	COG0335	large ribosomal subunit rRNA binding
FYB42_RS13685	COG0175	sulfate reduction
FYB42_RS13695	COG4208	sulfate ABC transporter
FYB42_RS13715	COG0602	queuosine metabolic process
FYB42_RS13720	COG0720	synthase
FYB42_RS13725	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB42_RS13730	COG0235	Class ii aldolase
FYB42_RS13755	COG1566	PFAM secretion protein HlyD family protein
FYB42_RS13765	COG0400	carboxylic ester hydrolase activity
FYB42_RS13790	COG1959	2 iron, 2 sulfur cluster binding
FYB42_RS13830	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FYB42_RS13845	COG0667	Aldo Keto reductase
FYB42_RS13855	COG5265	(ABC) transporter
FYB42_RS13890	COG3468	outer membrane autotransporter barrel domain protein
FYB42_RS13895	COG3468	outer membrane autotransporter barrel domain protein
FYB42_RS13920	COG0840	transmembrane signaling receptor activity
FYB42_RS13925	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FYB42_RS13930	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FYB42_RS13960	COG0583	DNA-binding transcription factor activity
FYB42_RS13970	COG2814	Major facilitator Superfamily
FYB42_RS14000	COG2084	Dehydrogenase
FYB42_RS14005	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS14015	COG1253	flavin adenine dinucleotide binding
FYB42_RS14030	COG2988	succinylglutamate desuccinylase activity
FYB42_RS14055	COG0861	Integral membrane protein TerC family
FYB42_RS14065	COG1595	DNA-templated transcription, initiation
FYB42_RS14095	COG3189	MarR family transcriptional regulator
FYB42_RS14125	COG0028	Belongs to the TPP enzyme family
FYB42_RS14135	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS14140	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FYB42_RS14150	COG1126	abc transporter atp-binding protein
FYB42_RS14175	COG0084	hydrolase, TatD family'
FYB42_RS14180	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FYB42_RS14185	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FYB42_RS14190	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FYB42_RS14215	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FYB42_RS14220	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS14230	COG2867	negative regulation of translational initiation
FYB42_RS14245	COG0330	HflC and HflK could
FYB42_RS14270	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYB42_RS14275	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FYB42_RS14300	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
FYB42_RS14305	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYB42_RS14310	COG0750	zinc metalloprotease
FYB42_RS14325	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FYB42_RS14330	COG0233	cytoplasmic translational termination
FYB42_RS14345	COG0052	Belongs to the universal ribosomal protein uS2 family
FYB42_RS14350	COG0024	Methionine aminopeptidase
FYB42_RS14385	COG0285	dihydrofolate synthase activity
FYB42_RS14415	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FYB42_RS14425	COG1677	Flagellar hook-basal body complex protein FliE
FYB42_RS14435	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FYB42_RS14440	COG1317	bacterial-type flagellum organization
FYB42_RS14445	COG1157	protein secretion by the type III secretion system
FYB42_RS14460	COG1580	Controls the rotational direction of flagella during chemotaxis
FYB42_RS14480	COG1338	Plays a role in the flagellum-specific transport system
FYB42_RS14500	COG0840	transmembrane signaling receptor activity
FYB42_RS14510	COG1256	bacterial-type flagellum assembly
FYB42_RS14540	COG1749	Flagellar hook protein flgE
FYB42_RS14550	COG1558	bacterial-type flagellum-dependent cell motility
FYB42_RS14555	COG1815	bacterial-type flagellum-dependent cell motility
FYB42_RS14590	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
FYB42_RS14595	COG0745	RESPONSE REGULATOR receiver
FYB42_RS14605	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FYB42_RS14610	COG0840	transmembrane signaling receptor activity
FYB42_RS14620	COG0643	Histidine kinase
FYB42_RS14620	COG2198	Histidine kinase
FYB42_RS14625	COG0745	RESPONSE REGULATOR receiver
FYB42_RS14655	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FYB42_RS14660	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYB42_RS14665	COG0508	dehydrogenase complex catalyzes the overall conversion of
FYB42_RS14670	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
FYB42_RS14680	COG4566	intracellular signal transduction
FYB42_RS14685	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
FYB42_RS14690	COG0339	signal peptide processing
FYB42_RS14695	COG1999	signal sequence binding
FYB42_RS14715	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB42_RS14725	COG1187	pseudouridine synthase activity
FYB42_RS14730	COG3161	chorismate lyase activity
FYB42_RS14745	COG1280	lysine exporter protein (LysE YggA)
FYB42_RS14755	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS14760	COG0601	transmembrane transport
FYB42_RS14765	COG0747	negative chemotaxis
FYB42_RS14815	COG0668	transmembrane transport
FYB42_RS14820	COG0165	Argininosuccinate lyase
FYB42_RS14830	COG0789	Transcriptional regulator
FYB42_RS14840	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB42_RS14845	COG0765	amino acid transport
FYB42_RS14850	COG1126	abc transporter atp-binding protein
FYB42_RS14860	COG2346	COG2346, Truncated hemoglobins
FYB42_RS14920	COG1335	isochorismatase
FYB42_RS14925	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB42_RS14945	COG2837	iron assimilation
FYB42_RS14975	COG4691	Plasmid stability protein
FYB42_RS15010	COG0583	DNA-binding transcription factor activity
FYB42_RS15015	COG2814	Major facilitator Superfamily
FYB42_RS15025	COG0501	Belongs to the peptidase M48B family
FYB42_RS15035	COG0583	DNA-binding transcription factor activity
FYB42_RS15045	COG2188	Transcriptional regulator
FYB42_RS15060	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FYB42_RS15070	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS15075	COG0129	dihydroxy-acid dehydratase activity
FYB42_RS15090	COG0129	dihydroxy-acid dehydratase activity
FYB42_RS15100	COG3622	Belongs to the hyi family
FYB42_RS15105	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYB42_RS15110	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB42_RS15125	COG0583	DNA-binding transcription factor activity
FYB42_RS15130	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB42_RS15135	COG3246	L-lysine catabolic process to acetate
FYB42_RS15170	COG0697	spore germination
FYB42_RS15185	COG0625	glutathione transferase activity
FYB42_RS15205	COG1280	lysine exporter protein (LysE YggA)
FYB42_RS15210	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYB42_RS15245	COG2207	Transcriptional regulator
FYB42_RS15285	COG1132	(ABC) transporter
FYB42_RS15310	COG0659	secondary active sulfate transmembrane transporter activity
FYB42_RS15345	COG5507	3-demethylubiquinone-9 3-methyltransferase
FYB42_RS15350	COG0384	phenazine biosynthesis protein PhzF
FYB42_RS15355	COG0583	DNA-binding transcription factor activity
FYB42_RS15360	COG2733	membrane
FYB42_RS15375	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS15380	COG3284	Transcriptional regulator
FYB42_RS15385	COG0656	L-ascorbic acid biosynthetic process
FYB42_RS15410	COG0842	Transport permease protein
FYB42_RS15430	COG1802	Transcriptional regulator
FYB42_RS15450	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS15455	COG2188	Transcriptional regulator
FYB42_RS15480	COG0789	Transcriptional regulator
FYB42_RS15495	COG1609	Transcriptional regulator
FYB42_RS15500	COG4172	Belongs to the ABC transporter superfamily
FYB42_RS15510	COG0601	transmembrane transport
FYB42_RS15515	COG0747	negative chemotaxis
FYB42_RS15530	COG1280	lysine exporter protein (LysE YggA)
FYB42_RS15565	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS15570	COG2079	MmgE PrpD family protein
FYB42_RS15590	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS15605	COG3618	amidohydrolase
FYB42_RS15620	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
FYB42_RS15635	COG0625	glutathione transferase activity
FYB42_RS15650	COG2814	Major facilitator Superfamily
FYB42_RS15655	COG0477	Major facilitator Superfamily
FYB42_RS15675	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FYB42_RS15680	COG1061	Type III restriction enzyme res subunit
FYB42_RS15720	COG2197	response regulator
FYB42_RS15725	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
FYB42_RS15745	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB42_RS15765	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS15785	COG3064	Membrane
FYB42_RS15785	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYB42_RS15785	COG3210	domain, Protein
FYB42_RS15790	COG0047	phosphoribosylformylglycinamidine synthase activity
FYB42_RS15790	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FYB42_RS15795	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB42_RS15800	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB42_RS15800	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB42_RS15815	COG0613	PHP domain protein
FYB42_RS15850	COG0450	alkyl hydroperoxide reductase
FYB42_RS15855	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS15870	COG0123	including yeast histone deacetylase and acetoin utilization protein
FYB42_RS15875	COG2951	lytic endotransglycosylase activity
FYB42_RS15895	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
FYB42_RS15900	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
FYB42_RS15930	COG0287	Prephenate dehydrogenase
FYB42_RS15965	COG2814	Major facilitator Superfamily
FYB42_RS16035	COG0583	DNA-binding transcription factor activity
FYB42_RS16050	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB42_RS16075	COG1053	succinate dehydrogenase
FYB42_RS16080	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS16085	COG2079	MmgE PrpD family protein
FYB42_RS16095	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS16120	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
FYB42_RS16120	COG0028	Belongs to the TPP enzyme family
FYB42_RS16125	COG0436	Aminotransferase
FYB42_RS16145	COG0778	Nitroreductase
FYB42_RS16150	COG2814	Major facilitator Superfamily
FYB42_RS16155	COG3706	GGDEF domain
FYB42_RS16160	COG0589	response to stress
FYB42_RS16170	COG2951	lytic endotransglycosylase activity
FYB42_RS16175	COG2833	Protein of unknown function (DUF455)
FYB42_RS16190	COG1132	(ABC) transporter
FYB42_RS16200	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FYB42_RS16200	COG1181	Belongs to the D-alanine--D-alanine ligase family
FYB42_RS16205	COG3237	CsbD-like
FYB42_RS16215	COG2823	Periplasmic or secreted lipoprotein
FYB42_RS16235	COG0672	)-iron permease
FYB42_RS16250	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
FYB42_RS16255	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS16260	COG3243	poly(R)-hydroxyalkanoic acid synthase
FYB42_RS16270	COG0564	pseudouridine synthase activity
FYB42_RS16280	COG1199	ATP-dependent helicase activity
FYB42_RS16285	COG2183	response to ionizing radiation
FYB42_RS16310	COG4774	siderophore transport
FYB42_RS16320	COG1595	DNA-templated transcription, initiation
FYB42_RS16325	COG2175	clavaminate synthase activity
FYB42_RS16335	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS16340	COG0583	DNA-binding transcription factor activity
FYB42_RS16345	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS16350	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
FYB42_RS16355	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYB42_RS16360	COG0508	dehydrogenase complex catalyzes the overall conversion of
FYB42_RS16365	COG0567	Dehydrogenase, E1 component
FYB42_RS16375	COG1522	sequence-specific DNA binding
FYB42_RS16385	COG0280	phosphate acetyltransferase
FYB42_RS16385	COG0281	malic enzyme
FYB42_RS16390	COG3539	Fimbrial protein
FYB42_RS16405	COG0372	Belongs to the citrate synthase family
FYB42_RS16410	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
FYB42_RS16415	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FYB42_RS16420	COG1053	succinate dehydrogenase
FYB42_RS16425	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
FYB42_RS16430	COG2009	succinate dehydrogenase
FYB42_RS16435	COG2188	Transcriptional regulator
FYB42_RS16440	COG0039	L-malate dehydrogenase activity
FYB42_RS16460	COG2828	Protein conserved in bacteria
FYB42_RS16470	COG1981	membrane
FYB42_RS16495	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB42_RS16505	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
FYB42_RS16540	COG0148	phosphopyruvate hydratase activity
FYB42_RS16550	COG2877	3-deoxy-8-phosphooctulonate synthase activity
FYB42_RS16555	COG0504	CTP synthase activity
FYB42_RS16575	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS16585	COG0747	negative chemotaxis
FYB42_RS16590	COG4172	Belongs to the ABC transporter superfamily
FYB42_RS16595	COG1446	asparaginase
FYB42_RS16625	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FYB42_RS16640	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
FYB42_RS16645	COG0697	spore germination
FYB42_RS16650	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB42_RS16660	COG3193	protein, possibly involved in utilization of glycolate and propanediol
FYB42_RS16665	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB42_RS16670	COG0791	NLP P60 protein
FYB42_RS16680	COG0583	DNA-binding transcription factor activity
FYB42_RS16695	COG0583	DNA-binding transcription factor activity
FYB42_RS16720	COG0670	Belongs to the BI1 family
FYB42_RS16725	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS16735	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FYB42_RS16745	COG1381	Involved in DNA repair and RecF pathway recombination
FYB42_RS16750	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FYB42_RS16755	COG0571	ribonuclease III activity
FYB42_RS16760	COG0681	Belongs to the peptidase S26 family
FYB42_RS16770	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FYB42_RS16795	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FYB42_RS16800	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FYB42_RS16825	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FYB42_RS16830	COG1399	metal-binding, possibly nucleic acid-binding protein
FYB42_RS16845	COG3023	N-Acetylmuramoyl-L-alanine amidase
FYB42_RS16855	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FYB42_RS16860	COG0546	phosphoglycolate phosphatase activity
FYB42_RS16870	COG1530	ribonuclease E activity
FYB42_RS16880	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FYB42_RS16885	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
FYB42_RS16910	COG3228	Belongs to the MtfA family
FYB42_RS16920	COG0251	oxidation-reduction process
FYB42_RS16930	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
FYB42_RS16945	COG2878	Part of a membrane complex involved in electron transport
FYB42_RS16950	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FYB42_RS16985	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FYB42_RS17010	COG1268	BioY protein
FYB42_RS17015	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FYB42_RS17020	COG1122	ATPase activity
FYB42_RS17025	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FYB42_RS17035	COG0271	Belongs to the BolA IbaG family
FYB42_RS17040	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYB42_RS17055	COG1196	nuclear chromosome segregation
FYB42_RS17060	COG0477	Major facilitator Superfamily
FYB42_RS17065	COG1573	uracil-dna glycosylase
FYB42_RS17070	COG1214	PFAM Peptidase M22, glycoprotease
FYB42_RS17085	COG0450	alkyl hydroperoxide reductase
FYB42_RS17090	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB42_RS17105	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
FYB42_RS17115	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FYB42_RS17120	COG0560	Phosphoserine phosphatase
FYB42_RS17125	COG0583	DNA-binding transcription factor activity
FYB42_RS17130	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS17135	COG0028	Belongs to the TPP enzyme family
FYB42_RS17160	COG4774	siderophore transport
FYB42_RS17170	COG1007	ATP synthesis coupled electron transport
FYB42_RS17185	COG0713	ATP synthesis coupled electron transport
FYB42_RS17195	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYB42_RS17200	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
FYB42_RS17205	COG1034	ATP synthesis coupled electron transport
FYB42_RS17215	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
FYB42_RS17230	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYB42_RS17235	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYB42_RS17240	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB42_RS17260	COG0671	phosphoesterase, PA-phosphatase related
FYB42_RS17270	COG1597	lipid kinase activity
FYB42_RS17275	COG0583	DNA-binding transcription factor activity
FYB42_RS17280	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FYB42_RS17285	COG1733	regulation of RNA biosynthetic process
FYB42_RS17290	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB42_RS17310	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
FYB42_RS17330	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB42_RS17350	COG3608	succinylglutamate desuccinylase aspartoacylase
FYB42_RS17355	COG0626	cystathionine gamma-synthase activity
FYB42_RS17360	COG0583	DNA-binding transcription factor activity
FYB42_RS17370	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS17375	COG0165	Argininosuccinate lyase
FYB42_RS17390	COG3799	methylaspartate ammonia-lyase activity
FYB42_RS17400	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FYB42_RS17410	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FYB42_RS17415	COG0149	triose-phosphate isomerase activity
FYB42_RS17435	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB42_RS17445	COG1185	polyribonucleotide nucleotidyltransferase activity
FYB42_RS17450	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
FYB42_RS17465	COG1183	phosphatidylcholine synthase activity
FYB42_RS17475	COG0440	acetolactate synthase activity
FYB42_RS17480	COG0028	Belongs to the TPP enzyme family
FYB42_RS17485	COG1289	transmembrane transporter activity
FYB42_RS17495	COG3022	response to hydroperoxide
FYB42_RS17500	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS17515	COG3486	L-lysine 6-monooxygenase (NADPH) activity
FYB42_RS17545	COG2814	Major facilitator Superfamily
FYB42_RS17565	COG3706	GGDEF domain
FYB42_RS17605	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FYB42_RS17615	COG1674	ftsk spoiiie
FYB42_RS17620	COG0492	ferredoxin-NADP+ reductase activity
FYB42_RS17625	COG1193	negative regulation of DNA recombination
FYB42_RS17635	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FYB42_RS17655	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
FYB42_RS17660	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
FYB42_RS17665	COG2205	protein histidine kinase activity
FYB42_RS17670	COG0745	RESPONSE REGULATOR receiver
FYB42_RS17705	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FYB42_RS17725	COG0612	Peptidase, M16
FYB42_RS17745	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
FYB42_RS17760	COG1420	regulation of RNA biosynthetic process
FYB42_RS17770	COG0497	DNA recombination
FYB42_RS17780	COG0735	belongs to the Fur family
FYB42_RS17785	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYB42_RS17830	COG0404	The glycine cleavage system catalyzes the degradation of glycine
FYB42_RS17830	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYB42_RS17835	COG4311	Sarcosine oxidase, delta subunit
FYB42_RS17840	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB42_RS17850	COG0583	DNA-binding transcription factor activity
FYB42_RS17870	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS17875	COG2030	dehydratase
FYB42_RS17885	COG1024	Enoyl-CoA hydratase
FYB42_RS17910	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB42_RS17920	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB42_RS17920	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB42_RS17935	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYB42_RS17950	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB42_RS17960	COG0405	Gamma-glutamyltransferase
FYB42_RS17975	COG1280	lysine exporter protein (LysE YggA)
FYB42_RS18005	COG0583	DNA-binding transcription factor activity
FYB42_RS18045	COG1414	Transcriptional regulator
FYB42_RS18050	COG1546	Belongs to the CinA family
FYB42_RS18050	COG1058	Belongs to the CinA family
FYB42_RS18065	COG0513	Belongs to the DEAD box helicase family
FYB42_RS18095	COG0429	hydrolase of the alpha beta-hydrolase fold
FYB42_RS18100	COG4783	chaperone-mediated protein folding
FYB42_RS18115	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB42_RS18130	COG0006	proline dipeptidase activity
FYB42_RS18140	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYB42_RS18185	COG0514	ATP-dependent DNA helicase (RecQ)
FYB42_RS18210	COG1271	oxidase subunit
FYB42_RS18225	COG2894	cell division
FYB42_RS18230	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
FYB42_RS18245	COG0488	(ABC) transporter
FYB42_RS18270	COG4608	Belongs to the ABC transporter superfamily
FYB42_RS18275	COG0444	Belongs to the ABC transporter superfamily
FYB42_RS18280	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS18285	COG0601	transmembrane transport
FYB42_RS18295	COG1215	transferase activity, transferring glycosyl groups
FYB42_RS18310	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FYB42_RS18320	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FYB42_RS18335	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS18340	COG2188	Transcriptional regulator
FYB42_RS18345	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FYB42_RS18350	COG2814	Major facilitator Superfamily
FYB42_RS18360	COG0259	pyridoxamine-phosphate oxidase activity
FYB42_RS18365	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FYB42_RS18380	COG0583	DNA-binding transcription factor activity
FYB42_RS18385	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS18395	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS18400	COG0405	Gamma-glutamyltransferase
FYB42_RS18410	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS18425	COG0802	atpase or kinase
FYB42_RS18430	COG0860	N-Acetylmuramoyl-L-alanine amidase
FYB42_RS18435	COG0586	Pfam SNARE associated Golgi protein
FYB42_RS18465	COG0617	tRNA 3'-terminal CCA addition
FYB42_RS18490	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB42_RS18495	COG2188	Transcriptional regulator
FYB42_RS18505	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB42_RS18510	COG1234	tRNA 3'-trailer cleavage
FYB42_RS18515	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS18525	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS18530	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS18535	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYB42_RS18540	COG2301	Belongs to the HpcH HpaI aldolase family
FYB42_RS18545	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS18550	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
FYB42_RS18560	COG1024	Enoyl-CoA hydratase
FYB42_RS18570	COG2188	Transcriptional regulator
FYB42_RS18575	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FYB42_RS18580	COG0066	3-isopropylmalate dehydratase activity
FYB42_RS18595	COG0752	glycyl-tRNA synthetase alpha subunit
FYB42_RS18600	COG0751	glycine-tRNA ligase activity
FYB42_RS18605	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FYB42_RS18610	COG0204	Acyl-transferase
FYB42_RS18625	COG0242	peptide deformylase activity
FYB42_RS18630	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS18635	COG0700	Nucleoside recognition
FYB42_RS18640	COG0469	pyruvate kinase activity
FYB42_RS18670	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FYB42_RS18680	COG2154	pterin-4-alpha-carbinolamine dehydratase
FYB42_RS18700	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB42_RS18705	COG0154	amidase activity
FYB42_RS18715	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS18725	COG0747	negative chemotaxis
FYB42_RS18740	COG0019	diaminopimelate decarboxylase activity
FYB42_RS18755	COG3712	iron ion homeostasis
FYB42_RS18760	COG4774	siderophore transport
FYB42_RS18765	COG2353	YceI-like domain
FYB42_RS18770	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYB42_RS18785	COG0583	DNA-binding transcription factor activity
FYB42_RS18805	COG3384	dioxygenase
FYB42_RS18810	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB42_RS18845	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS18850	COG1309	transcriptional regulator
FYB42_RS18855	COG2982	Protein involved in outer membrane biogenesis
FYB42_RS18860	COG2818	Glycosylase
FYB42_RS18880	COG1653	transport
FYB42_RS18885	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYB42_RS18890	COG3842	ATPase activity
FYB42_RS18895	COG0395	ABC-type sugar transport system, permease component
FYB42_RS18920	COG2186	Transcriptional regulator
FYB42_RS18940	COG1454	alcohol dehydrogenase
FYB42_RS18955	COG2011	ABC-type metal ion transport system permease component
FYB42_RS18960	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FYB42_RS18965	COG1501	Belongs to the glycosyl hydrolase 31 family
FYB42_RS18980	COG0318	PFAM AMP-dependent synthetase and ligase
FYB42_RS18985	COG1473	amidohydrolase
FYB42_RS18995	COG2855	membrane
FYB42_RS19005	COG2239	Acts as a magnesium transporter
FYB42_RS19020	COG1522	sequence-specific DNA binding
FYB42_RS19025	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB42_RS19030	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS19055	COG0739	heme binding
FYB42_RS19065	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
FYB42_RS19070	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FYB42_RS19080	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FYB42_RS19110	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FYB42_RS19115	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FYB42_RS19125	COG3116	cell division
FYB42_RS19130	COG0275	rRNA processing
FYB42_RS19135	COG2001	Belongs to the MraZ family
FYB42_RS19145	COG0488	(ABC) transporter
FYB42_RS19150	COG0418	dihydroorotase activity
FYB42_RS19155	COG1473	amidohydrolase
FYB42_RS19205	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FYB42_RS19210	COG4654	Cytochrome c, class I
FYB42_RS19265	COG2084	Dehydrogenase
FYB42_RS19310	COG0824	Thioesterase
FYB42_RS19315	COG0811	peptide transport
FYB42_RS19320	COG0848	biopolymer transport protein
FYB42_RS19345	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYB42_RS19350	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
FYB42_RS19355	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS19370	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB42_RS19395	COG0183	Belongs to the thiolase family
FYB42_RS19405	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS19410	COG0583	DNA-binding transcription factor activity
FYB42_RS19415	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS19420	COG1024	Enoyl-CoA hydratase
FYB42_RS19430	COG1253	flavin adenine dinucleotide binding
FYB42_RS19435	COG1285	pathogenesis
FYB42_RS19460	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB42_RS19465	COG0697	spore germination
FYB42_RS19475	COG1073	alpha beta
FYB42_RS19500	COG0463	Glycosyl transferase, family 2
FYB42_RS19510	COG0786	glutamate:sodium symporter activity
FYB42_RS19520	COG2031	fatty acid transporter
FYB42_RS19535	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FYB42_RS19540	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FYB42_RS19550	COG0328	RNA-DNA hybrid ribonuclease activity
FYB42_RS19555	COG2226	methyltransferase
FYB42_RS19560	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FYB42_RS19565	COG1388	LysM domain
FYB42_RS19565	COG0741	lytic transglycosylase activity
FYB42_RS19580	COG2979	Protein of unknown function (DUF533)
FYB42_RS19600	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS19615	COG3119	arylsulfatase activity
FYB42_RS19640	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
FYB42_RS19660	COG0832	Belongs to the urease beta subunit family
FYB42_RS19670	COG0831	urea catabolic process
FYB42_RS19675	COG0829	nickel cation binding
FYB42_RS19690	COG0633	Ferredoxin
FYB42_RS19705	COG2188	Transcriptional regulator
FYB42_RS19710	COG3799	methylaspartate ammonia-lyase activity
FYB42_RS19730	COG2719	SpoVR family
FYB42_RS19735	COG2718	Belongs to the UPF0229 family
FYB42_RS19740	COG2766	serine protein kinase
FYB42_RS19745	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FYB42_RS19745	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FYB42_RS19755	COG4977	sequence-specific DNA binding
FYB42_RS19760	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
FYB42_RS19790	COG0316	Belongs to the HesB IscA family
FYB42_RS19810	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
FYB42_RS19815	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB42_RS19820	COG0312	modulator of DNA gyrase
FYB42_RS19840	COG1116	anion transmembrane transporter activity
FYB42_RS19845	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS19850	COG1335	isochorismatase
FYB42_RS19855	COG0346	lactoylglutathione lyase activity
FYB42_RS19860	COG0513	Belongs to the DEAD box helicase family
FYB42_RS19870	COG1802	Transcriptional regulator
FYB42_RS19875	COG0045	succinate-CoA ligase (ADP-forming) activity
FYB42_RS19875	COG1042	CoA-binding domain protein
FYB42_RS19875	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FYB42_RS19895	COG1522	sequence-specific DNA binding
FYB42_RS19925	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FYB42_RS19930	COG1696	Membrane protein involved in D-alanine export
FYB42_RS19955	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYB42_RS19970	COG0439	Biotin carboxylase
FYB42_RS19975	COG0511	ligase activity, forming carbon-carbon bonds
FYB42_RS19980	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
FYB42_RS19985	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB42_RS19990	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FYB42_RS19995	COG3150	esterase
FYB42_RS20000	COG0557	exoribonuclease II activity
FYB42_RS20015	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FYB42_RS20050	COG1678	Uncharacterized ACR, COG1678
FYB42_RS20065	COG0352	thiamine-phosphate diphosphorylase activity
FYB42_RS20095	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS20105	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS20165	COG0494	nUDIX hydrolase
FYB42_RS20190	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
FYB42_RS20215	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
FYB42_RS20220	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
FYB42_RS20250	COG1126	abc transporter atp-binding protein
FYB42_RS20255	COG0765	amino acid transport
FYB42_RS20260	COG4597	amino acid ABC transporter
FYB42_RS20265	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB42_RS20270	COG2884	Cell division ATP-binding protein ftsE
FYB42_RS20275	COG2177	Part of the ABC transporter FtsEX involved in
FYB42_RS20290	COG1194	a g-specific adenine glycosylase
FYB42_RS20310	COG4206	TonB-dependent receptor
FYB42_RS20315	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FYB42_RS20325	COG0351	phosphomethylpyrimidine kinase
FYB42_RS20330	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
FYB42_RS20340	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
FYB42_RS20350	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
FYB42_RS20365	COG2226	methyltransferase
FYB42_RS20370	COG0745	RESPONSE REGULATOR receiver
FYB42_RS20375	COG5002	protein histidine kinase activity
FYB42_RS20385	COG5002	protein histidine kinase activity
FYB42_RS20395	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB42_RS20400	COG0583	DNA-binding transcription factor activity
FYB42_RS20410	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FYB42_RS20415	COG1984	allophanate hydrolase subunit 2
FYB42_RS20430	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS20440	COG1024	Enoyl-CoA hydratase
FYB42_RS20455	COG1802	Transcriptional regulator
FYB42_RS20465	COG1238	metal cluster binding
FYB42_RS20470	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB42_RS20475	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB42_RS20495	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FYB42_RS20500	COG4988	ABC transporter
FYB42_RS20510	COG1294	oxidase, subunit
FYB42_RS20535	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
FYB42_RS20550	COG1137	ATPase activity
FYB42_RS20555	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FYB42_RS20570	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYB42_RS20570	COG2010	Cytochrome c
FYB42_RS20580	COG1660	Displays ATPase and GTPase activities
FYB42_RS20590	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FYB42_RS20605	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
FYB42_RS20610	COG2823	Periplasmic or secreted lipoprotein
FYB42_RS20640	COG0471	metal ion transport
FYB42_RS20645	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYB42_RS20650	COG0772	Belongs to the SEDS family
FYB42_RS20655	COG0768	penicillin binding
FYB42_RS20665	COG1792	Involved in formation and maintenance of cell shape
FYB42_RS20670	COG1077	Cell shape determining protein MreB Mrl
FYB42_RS20695	COG0708	Exodeoxyribonuclease III
FYB42_RS20705	COG2860	membrane
FYB42_RS20715	COG0583	DNA-binding transcription factor activity
FYB42_RS20720	COG0473	3-isopropylmalate dehydrogenase activity
FYB42_RS20745	COG0583	DNA-binding transcription factor activity
FYB42_RS20750	COG2515	1-aminocyclopropane-1-carboxylate deaminase
FYB42_RS20755	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB42_RS20760	COG0765	amino acid transport
FYB42_RS20765	COG0765	amino acid transport
FYB42_RS20770	COG1126	abc transporter atp-binding protein
FYB42_RS20775	COG1794	racemase activity, acting on amino acids and derivatives
FYB42_RS20780	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB42_RS20785	COG2223	nitrite transmembrane transporter activity
FYB42_RS20790	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYB42_RS20790	COG2813	Specifically methylates the guanine in position
FYB42_RS20800	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYB42_RS20845	COG0583	DNA-binding transcription factor activity
FYB42_RS20850	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
FYB42_RS20855	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB42_RS20890	COG0154	amidase activity
FYB42_RS20900	COG1414	Transcriptional regulator
FYB42_RS20910	COG1024	Enoyl-CoA hydratase
FYB42_RS20910	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB42_RS20920	COG2132	Multicopper oxidase
FYB42_RS20965	COG1024	Enoyl-CoA hydratase
FYB42_RS20970	COG1024	Enoyl-CoA hydratase
FYB42_RS20975	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FYB42_RS20985	COG0747	negative chemotaxis
FYB42_RS20995	COG0601	transmembrane transport
FYB42_RS21000	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS21005	COG0444	Belongs to the ABC transporter superfamily
FYB42_RS21010	COG4608	Belongs to the ABC transporter superfamily
FYB42_RS21020	COG2195	Cleaves the N-terminal amino acid of tripeptides
FYB42_RS21025	COG0210	DNA helicase
FYB42_RS21030	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FYB42_RS21045	COG0355	proton-transporting ATP synthase activity, rotational mechanism
FYB42_RS21065	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FYB42_RS21080	COG0356	it plays a direct role in the translocation of protons across the membrane
FYB42_RS21095	COG1024	Enoyl-CoA hydratase
FYB42_RS21120	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB42_RS21130	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYB42_RS21135	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
FYB42_RS21140	COG2967	ApaG domain
FYB42_RS21145	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FYB42_RS21150	COG0546	phosphoglycolate phosphatase activity
FYB42_RS21160	COG0512	Glutamine amidotransferase of anthranilate synthase
FYB42_RS21175	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS21195	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FYB42_RS21205	COG1607	acyl-coa hydrolase
FYB42_RS21260	COG1802	Transcriptional regulator
FYB42_RS21290	COG1595	DNA-templated transcription, initiation
FYB42_RS21305	COG3720	iron ion transport
FYB42_RS21310	COG4558	Periplasmic binding protein
FYB42_RS21315	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYB42_RS21325	COG1683	Conserved Protein
FYB42_RS21355	COG3064	Membrane
FYB42_RS21360	COG0583	DNA-binding transcription factor activity
FYB42_RS21370	COG1234	tRNA 3'-trailer cleavage
FYB42_RS21380	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FYB42_RS21385	COG1802	Transcriptional regulator
FYB42_RS21395	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB42_RS21415	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS21435	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS21440	COG0583	DNA-binding transcription factor activity
FYB42_RS21450	COG1522	sequence-specific DNA binding
FYB42_RS21455	COG0183	Belongs to the thiolase family
FYB42_RS21515	COG2814	Major facilitator Superfamily
FYB42_RS21540	COG1999	signal sequence binding
FYB42_RS21585	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB42_RS21605	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FYB42_RS21615	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FYB42_RS21625	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
FYB42_RS21630	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
FYB42_RS21640	COG0070	glutamate synthase
FYB42_RS21640	COG0069	glutamate synthase activity
FYB42_RS21640	COG0067	glutamate synthase
FYB42_RS21650	COG3047	cAMP biosynthetic process
FYB42_RS21660	COG1127	ABC transporter
FYB42_RS21665	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FYB42_RS21670	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FYB42_RS21675	COG2853	Lipoprotein
FYB42_RS21685	COG1131	(ABC) transporter
FYB42_RS21690	COG0842	Transport permease protein
FYB42_RS21710	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FYB42_RS21720	COG0131	Imidazoleglycerol-phosphate dehydratase
FYB42_RS21730	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
FYB42_RS21745	COG0140	phosphoribosyl-ATP diphosphatase activity
FYB42_RS21750	COG0537	adenosine 5'-monophosphoramidase activity
FYB42_RS21755	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FYB42_RS21780	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FYB42_RS21790	COG0723	plastoquinol--plastocyanin reductase activity
FYB42_RS21795	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FYB42_RS21800	COG2857	Cytochrome c1
FYB42_RS21805	COG0625	glutathione transferase activity
FYB42_RS21810	COG2969	positive regulation of protein catabolic process
FYB42_RS21840	COG0583	DNA-binding transcription factor activity
FYB42_RS21845	COG0492	ferredoxin-NADP+ reductase activity
FYB42_RS21865	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS21875	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB42_RS21895	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS21930	COG3702	type iv secretory pathway
FYB42_RS21950	COG3736	Type IV secretory pathway, component VirB8
FYB42_RS21965	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
FYB42_RS21975	COG0697	spore germination
FYB42_RS21995	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
FYB42_RS22000	COG0747	negative chemotaxis
FYB42_RS22005	COG0601	transmembrane transport
FYB42_RS22010	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB42_RS22020	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
FYB42_RS22030	COG0513	Belongs to the DEAD box helicase family
FYB42_RS22035	COG1280	lysine exporter protein (LysE YggA)
FYB42_RS22060	COG0583	DNA-binding transcription factor activity
FYB42_RS22070	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FYB42_RS22080	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYB42_RS22085	COG0154	amidase activity
FYB42_RS22090	COG1609	Transcriptional regulator
FYB42_RS22110	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FYB42_RS22115	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FYB42_RS22120	COG3842	ATPase activity
FYB42_RS22125	COG1653	transport
FYB42_RS22130	COG1175	transmembrane transport
FYB42_RS22135	COG0395	ABC-type sugar transport system, permease component
FYB42_RS22170	COG1280	lysine exporter protein (LysE YggA)
FYB42_RS22185	COG1960	acyl-CoA dehydrogenase activity
FYB42_RS22195	COG0183	Belongs to the thiolase family
FYB42_RS22200	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FYB42_RS22220	COG3181	Tripartite tricarboxylate transporter family receptor
FYB42_RS22230	COG2358	TRAP transporter, solute receptor (TAXI family
FYB42_RS22245	COG2922	Belongs to the Smg family
FYB42_RS22270	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB42_RS22275	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS22280	COG1028	Short-chain dehydrogenase reductase Sdr
FYB42_RS22285	COG1012	belongs to the aldehyde dehydrogenase family
FYB42_RS22295	COG0028	Belongs to the TPP enzyme family
FYB42_RS22300	COG1522	sequence-specific DNA binding
FYB42_RS22305	COG3781	membrane
FYB42_RS22335	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FYB42_RS22360	COG1304	FMN binding
FYB42_RS22380	COG1414	Transcriptional regulator
FYB42_RS22395	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
FYB42_RS22400	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FYB42_RS22405	COG0594	ribonuclease P activity
FYB42_RS22410	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
FYB42_RS22420	COG0753	catalase activity
FYB42_RS22425	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB42_RS22430	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB42_RS22440	COG2175	clavaminate synthase activity
FYB42_RS22445	COG1473	amidohydrolase
FYB42_RS22450	COG4608	Belongs to the ABC transporter superfamily
FYB42_RS22455	COG0444	Belongs to the ABC transporter superfamily
FYB42_RS22465	COG0601	transmembrane transport
FYB42_RS22470	COG0747	negative chemotaxis
FYB42_RS22510	COG0436	Aminotransferase
FYB42_RS22515	COG1278	Cold shock