locus-tag	class	description
FYB56_RS00010	COG0357	Ribosomal RNA small subunit methyltransferase G
FYB56_RS00015	COG1192	Involved in chromosome partitioning
FYB56_RS00025	COG1475	DNA binding
FYB56_RS00030	COG0252	asparaginase activity
FYB56_RS00050	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FYB56_RS00060	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FYB56_RS00075	COG0081	regulation of translation
FYB56_RS00080	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
FYB56_RS00085	COG0222	ribosome binding
FYB56_RS00095	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
FYB56_RS00130	COG1230	cation diffusion facilitator family transporter
FYB56_RS00140	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
FYB56_RS00145	COG0049	tRNA binding
FYB56_RS00155	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FYB56_RS00165	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
FYB56_RS00175	COG0089	rRNA binding
FYB56_RS00180	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
FYB56_RS00190	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
FYB56_RS00195	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
FYB56_RS00200	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
FYB56_RS00205	COG0255	Belongs to the universal ribosomal protein uL29 family
FYB56_RS00210	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
FYB56_RS00230	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
FYB56_RS00235	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
FYB56_RS00240	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
FYB56_RS00245	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
FYB56_RS00250	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
FYB56_RS00260	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
FYB56_RS00265	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
FYB56_RS00270	COG1841	ribosomal large subunit assembly
FYB56_RS00280	COG0201	protein transport
FYB56_RS00285	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FYB56_RS00290	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FYB56_RS00295	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
FYB56_RS00300	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
FYB56_RS00305	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
FYB56_RS00310	COG0202	RNA polymerase activity
FYB56_RS00315	COG0203	ribosomal protein L17
FYB56_RS00320	COG0537	adenosine 5'-monophosphoramidase activity
FYB56_RS00325	COG1324	tolerance protein
FYB56_RS00330	COG4232	protein-disulfide reductase activity
FYB56_RS00345	COG0218	Necessary for normal cell division and for the maintenance of normal septation
FYB56_RS00355	COG1333	cytochrome c biogenesis protein
FYB56_RS00360	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYB56_RS00380	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
FYB56_RS00385	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
FYB56_RS00405	COG2814	Major facilitator Superfamily
FYB56_RS00450	COG0402	S-adenosylhomocysteine deaminase activity
FYB56_RS00460	COG0438	transferase activity, transferring glycosyl groups
FYB56_RS00480	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS00510	COG2186	Transcriptional regulator
FYB56_RS00530	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB56_RS00535	COG1956	GAF domain-containing protein
FYB56_RS00540	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB56_RS00570	COG0531	amino acid
FYB56_RS00600	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
FYB56_RS00605	COG3568	Endonuclease Exonuclease Phosphatase
FYB56_RS00610	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYB56_RS00630	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYB56_RS00640	COG0367	asparagine synthase
FYB56_RS00660	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FYB56_RS00665	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FYB56_RS00705	COG0367	asparagine synthase
FYB56_RS00710	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
FYB56_RS00735	COG0367	asparagine synthase
FYB56_RS00745	COG0438	transferase activity, transferring glycosyl groups
FYB56_RS00765	COG0438	transferase activity, transferring glycosyl groups
FYB56_RS00770	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FYB56_RS00775	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FYB56_RS00805	COG0859	PFAM glycosyl transferase family 9
FYB56_RS00830	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FYB56_RS00835	COG1127	ABC transporter
FYB56_RS00855	COG1686	Belongs to the peptidase S11 family
FYB56_RS00895	COG2096	Adenosyltransferase
FYB56_RS00920	COG0523	cobalamin synthesis protein
FYB56_RS00925	COG0735	belongs to the Fur family
FYB56_RS00935	COG1121	(ABC) transporter
FYB56_RS00945	COG0803	Belongs to the bacterial solute-binding protein 9 family
FYB56_RS00955	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
FYB56_RS00965	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
FYB56_RS00975	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
FYB56_RS00980	COG1560	Kdo2-lipid A biosynthetic process
FYB56_RS00990	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
FYB56_RS01010	COG1950	PFAM Membrane protein of
FYB56_RS01020	COG0583	DNA-binding transcription factor activity
FYB56_RS01030	COG0477	Major facilitator Superfamily
FYB56_RS01055	COG0513	Belongs to the DEAD box helicase family
FYB56_RS01065	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYB56_RS01070	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FYB56_RS01085	COG0735	belongs to the Fur family
FYB56_RS01105	COG0438	transferase activity, transferring glycosyl groups
FYB56_RS01130	COG0640	Transcriptional regulator
FYB56_RS01190	COG0583	DNA-binding transcription factor activity
FYB56_RS01205	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FYB56_RS01210	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB56_RS01215	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB56_RS01230	COG0758	DNA mediated transformation
FYB56_RS01235	COG1522	sequence-specific DNA binding
FYB56_RS01245	COG0242	peptide deformylase activity
FYB56_RS01260	COG0546	phosphoglycolate phosphatase activity
FYB56_RS01280	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FYB56_RS01285	COG1942	4-Oxalocrotonate Tautomerase
FYB56_RS01290	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB56_RS01325	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYB56_RS01325	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FYB56_RS01335	COG5000	phosphorelay sensor kinase activity
FYB56_RS01340	COG2204	response regulator
FYB56_RS01365	COG2068	MobA-Related Protein
FYB56_RS01380	COG0596	Alpha beta hydrolase
FYB56_RS01385	COG2309	aminopeptidase activity
FYB56_RS01390	COG1335	isochorismatase
FYB56_RS01415	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB56_RS01440	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB56_RS01445	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS01465	COG2226	methyltransferase
FYB56_RS01480	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS01490	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
FYB56_RS01495	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYB56_RS01510	COG4942	peptidase
FYB56_RS01515	COG0793	Belongs to the peptidase S41A family
FYB56_RS01520	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FYB56_RS01540	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYB56_RS01575	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
FYB56_RS01580	COG0211	Belongs to the bacterial ribosomal protein bL27 family
FYB56_RS01585	COG0261	This protein binds to 23S rRNA in the presence of protein L20
FYB56_RS01595	COG0142	geranyltranstransferase activity
FYB56_RS01605	COG0583	DNA-binding transcription factor activity
FYB56_RS01615	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
FYB56_RS01620	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB56_RS01635	COG2994	toxin metabolic process
FYB56_RS01645	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
FYB56_RS01650	COG2274	protein secretion by the type I secretion system
FYB56_RS01655	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB56_RS01660	COG1538	Outer membrane efflux protein
FYB56_RS01675	COG0765	amino acid transport
FYB56_RS01680	COG0765	amino acid transport
FYB56_RS01685	COG1126	abc transporter atp-binding protein
FYB56_RS01705	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS01715	COG1802	Transcriptional regulator
FYB56_RS01730	COG1802	Transcriptional regulator
FYB56_RS01740	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS01750	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS01780	COG0583	DNA-binding transcription factor activity
FYB56_RS01785	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS01790	COG2301	Belongs to the HpcH HpaI aldolase family
FYB56_RS01795	COG2188	Transcriptional regulator
FYB56_RS01840	COG0583	DNA-binding transcription factor activity
FYB56_RS01845	COG1024	Enoyl-CoA hydratase
FYB56_RS01880	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS01895	COG1902	pentaerythritol trinitrate reductase activity
FYB56_RS01920	COG0745	RESPONSE REGULATOR receiver
FYB56_RS01960	COG2890	protein-(glutamine-N5) methyltransferase activity
FYB56_RS01965	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
FYB56_RS01975	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS02045	COG4211	Belongs to the binding-protein-dependent transport system permease family
FYB56_RS02055	COG0683	leucine binding
FYB56_RS02060	COG0154	amidase activity
FYB56_RS02065	COG0288	reversible hydration of carbon dioxide
FYB56_RS02085	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYB56_RS02100	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FYB56_RS02110	COG1414	Transcriptional regulator
FYB56_RS02115	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS02120	COG2031	fatty acid transporter
FYB56_RS02125	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB56_RS02155	COG2808	Putative FMN-binding domain
FYB56_RS02160	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB56_RS02165	COG0747	negative chemotaxis
FYB56_RS02170	COG0657	acetylesterase activity
FYB56_RS02180	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYB56_RS02185	COG2207	Transcriptional regulator
FYB56_RS02210	COG1538	Outer membrane efflux protein
FYB56_RS02225	COG0583	DNA-binding transcription factor activity
FYB56_RS02230	COG0628	permease
FYB56_RS02240	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FYB56_RS02245	COG0251	oxidation-reduction process
FYB56_RS02255	COG0330	HflC and HflK could
FYB56_RS02260	COG3422	double-strand break repair
FYB56_RS02275	COG0583	DNA-binding transcription factor activity
FYB56_RS02305	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS02310	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS02315	COG1414	Transcriptional regulator
FYB56_RS02320	COG1024	Enoyl-CoA hydratase
FYB56_RS02325	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB56_RS02330	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS02335	COG0604	alcohol dehydrogenase
FYB56_RS02340	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS02345	COG0583	DNA-binding transcription factor activity
FYB56_RS02355	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS02370	COG0251	oxidation-reduction process
FYB56_RS02380	COG2031	fatty acid transporter
FYB56_RS02410	COG1278	Cold shock
FYB56_RS02415	COG0583	DNA-binding transcription factor activity
FYB56_RS02425	COG3119	arylsulfatase activity
FYB56_RS02440	COG1228	amidohydrolase
FYB56_RS02445	COG0523	cobalamin synthesis protein
FYB56_RS02450	COG1819	glycosyl
FYB56_RS02530	COG0625	glutathione transferase activity
FYB56_RS02545	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FYB56_RS02550	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FYB56_RS02555	COG1652	LysM domain
FYB56_RS02580	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS02585	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYB56_RS02620	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB56_RS02675	COG0583	DNA-binding transcription factor activity
FYB56_RS02680	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS02690	COG1024	Enoyl-CoA hydratase
FYB56_RS02695	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS02720	COG0028	Belongs to the TPP enzyme family
FYB56_RS02730	COG1024	Enoyl-CoA hydratase
FYB56_RS02730	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB56_RS02735	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS02740	COG1414	Transcriptional regulator
FYB56_RS02760	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS02765	COG1609	Transcriptional regulator
FYB56_RS02790	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB56_RS02795	COG1024	Enoyl-CoA hydratase
FYB56_RS02810	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS02815	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS02820	COG0583	DNA-binding transcription factor activity
FYB56_RS02835	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS02850	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FYB56_RS02860	COG3976	FMN-binding domain protein
FYB56_RS02860	COG1053	succinate dehydrogenase
FYB56_RS02895	COG0683	leucine binding
FYB56_RS02905	COG1309	transcriptional regulator
FYB56_RS02925	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS02930	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS02935	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS02940	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS02950	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FYB56_RS02960	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
FYB56_RS02975	COG2030	dehydratase
FYB56_RS02985	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS02990	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS02995	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS03020	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB56_RS03040	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYB56_RS03040	COG1902	pentaerythritol trinitrate reductase activity
FYB56_RS03055	COG0427	acetyl-CoA hydrolase
FYB56_RS03060	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS03075	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FYB56_RS03095	COG0183	Belongs to the thiolase family
FYB56_RS03100	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB56_RS03110	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS03115	COG0583	DNA-binding transcription factor activity
FYB56_RS03120	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS03135	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
FYB56_RS03160	COG1309	transcriptional regulator
FYB56_RS03170	COG1024	Enoyl-CoA hydratase
FYB56_RS03190	COG1024	Enoyl-CoA hydratase
FYB56_RS03195	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS03200	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS03205	COG1454	alcohol dehydrogenase
FYB56_RS03210	COG1024	Enoyl-CoA hydratase
FYB56_RS03230	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS03235	COG0431	NADPH-dependent FMN reductase
FYB56_RS03240	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS03245	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB56_RS03260	COG1414	Transcriptional regulator
FYB56_RS03265	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYB56_RS03270	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS03275	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS03300	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS03320	COG1024	Enoyl-CoA hydratase
FYB56_RS03330	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS03335	COG1024	Enoyl-CoA hydratase
FYB56_RS03340	COG0183	Belongs to the thiolase family
FYB56_RS03345	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS03360	COG0583	DNA-binding transcription factor activity
FYB56_RS03365	COG2267	carboxylic ester hydrolase activity
FYB56_RS03380	COG0625	glutathione transferase activity
FYB56_RS03385	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS03395	COG2186	Transcriptional regulator
FYB56_RS03400	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS03405	COG0626	cystathionine gamma-synthase activity
FYB56_RS03445	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB56_RS03450	COG0436	Aminotransferase
FYB56_RS03470	COG1473	amidohydrolase
FYB56_RS03475	COG1414	Transcriptional regulator
FYB56_RS03485	COG0154	amidase activity
FYB56_RS03545	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB56_RS03560	COG3135	benzoate transporter
FYB56_RS03585	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYB56_RS03605	COG5444	nuclease activity
FYB56_RS03725	COG3468	outer membrane autotransporter barrel domain protein
FYB56_RS03785	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FYB56_RS03830	COG0489	protein tyrosine kinase activity
FYB56_RS03870	COG1982	Orn Lys Arg decarboxylase major
FYB56_RS03875	COG2081	HI0933 family
FYB56_RS03880	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FYB56_RS03895	COG0509	glycine decarboxylation via glycine cleavage system
FYB56_RS03920	COG1024	Enoyl-CoA hydratase
FYB56_RS03940	COG4172	Belongs to the ABC transporter superfamily
FYB56_RS03945	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB56_RS03950	COG0601	transmembrane transport
FYB56_RS03955	COG0747	negative chemotaxis
FYB56_RS03995	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FYB56_RS04000	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FYB56_RS04015	COG0438	transferase activity, transferring glycosyl groups
FYB56_RS04030	COG0438	transferase activity, transferring glycosyl groups
FYB56_RS04035	COG0438	transferase activity, transferring glycosyl groups
FYB56_RS04040	COG0166	Belongs to the GPI family
FYB56_RS04055	COG0277	FAD linked oxidase domain protein
FYB56_RS04060	COG0745	RESPONSE REGULATOR receiver
FYB56_RS04065	COG0642	Histidine kinase
FYB56_RS04070	COG1368	sulfuric ester hydrolase activity
FYB56_RS04155	COG0012	GTP binding
FYB56_RS04170	COG0745	RESPONSE REGULATOR receiver
FYB56_RS04175	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS04180	COG1309	transcriptional regulator
FYB56_RS04190	COG2814	Major facilitator Superfamily
FYB56_RS04215	COG0281	malic enzyme
FYB56_RS04215	COG0280	phosphate acetyltransferase
FYB56_RS04225	COG0601	transmembrane transport
FYB56_RS04230	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB56_RS04235	COG4172	Belongs to the ABC transporter superfamily
FYB56_RS04250	COG0583	DNA-binding transcription factor activity
FYB56_RS04265	COG0640	Transcriptional regulator
FYB56_RS04280	COG3135	benzoate transporter
FYB56_RS04285	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FYB56_RS04290	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
FYB56_RS04295	COG0742	ribosomal rna small subunit methyltransferase
FYB56_RS04310	COG3639	organic phosphonate transmembrane transporter activity
FYB56_RS04315	COG3639	organic phosphonate transmembrane transporter activity
FYB56_RS04345	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
FYB56_RS04350	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYB56_RS04360	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FYB56_RS04365	COG1546	Belongs to the CinA family
FYB56_RS04365	COG1058	Belongs to the CinA family
FYB56_RS04370	COG0284	orotidine-5'-phosphate decarboxylase activity
FYB56_RS04375	COG1252	NADH dehydrogenase
FYB56_RS04400	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
FYB56_RS04420	COG1053	succinate dehydrogenase
FYB56_RS04430	COG0583	DNA-binding transcription factor activity
FYB56_RS04440	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS04445	COG1414	Transcriptional regulator
FYB56_RS04460	COG1335	isochorismatase
FYB56_RS04475	COG0405	Gamma-glutamyltransferase
FYB56_RS04490	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS04495	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS04500	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS04505	COG0583	DNA-binding transcription factor activity
FYB56_RS04530	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS04535	COG0583	DNA-binding transcription factor activity
FYB56_RS04540	COG5001	Diguanylate cyclase
FYB56_RS04595	COG1024	Enoyl-CoA hydratase
FYB56_RS04595	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB56_RS04600	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS04615	COG1024	Enoyl-CoA hydratase
FYB56_RS04620	COG1024	Enoyl-CoA hydratase
FYB56_RS04625	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS04630	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS04670	COG3685	Protein conserved in bacteria
FYB56_RS04680	COG0387	Pfam Sodium calcium exchanger
FYB56_RS04685	COG3795	YCII-related domain
FYB56_RS04690	COG2188	Transcriptional regulator
FYB56_RS04715	COG0154	amidase activity
FYB56_RS04720	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS04725	COG1024	Enoyl-CoA hydratase
FYB56_RS04735	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS04750	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS04755	COG1414	Transcriptional regulator
FYB56_RS04770	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB56_RS04775	COG0251	oxidation-reduction process
FYB56_RS04780	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB56_RS04800	COG1902	pentaerythritol trinitrate reductase activity
FYB56_RS04805	COG0583	DNA-binding transcription factor activity
FYB56_RS04815	COG0590	tRNA wobble adenosine to inosine editing
FYB56_RS04820	COG2807	transmembrane transport
FYB56_RS04825	COG0307	riboflavin synthase, alpha
FYB56_RS04830	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS04835	COG1522	sequence-specific DNA binding
FYB56_RS04845	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS04855	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS04895	COG1418	mRNA catabolic process
FYB56_RS04905	COG1335	isochorismatase
FYB56_RS04930	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB56_RS04935	COG2274	protein secretion by the type I secretion system
FYB56_RS04945	COG1538	Outer membrane efflux protein
FYB56_RS04960	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FYB56_RS04970	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS04980	COG1309	transcriptional regulator
FYB56_RS04985	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS04990	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS04995	COG2076	Multidrug Resistance protein
FYB56_RS05000	COG1309	transcriptional regulator
FYB56_RS05020	COG0840	transmembrane signaling receptor activity
FYB56_RS05035	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB56_RS05060	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS05070	COG1024	Enoyl-CoA hydratase
FYB56_RS05080	COG2203	Gaf domain
FYB56_RS05080	COG2199	diguanylate cyclase activity
FYB56_RS05100	COG0154	amidase activity
FYB56_RS05130	COG3945	hemerythrin HHE cation binding domain
FYB56_RS05145	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FYB56_RS05145	COG2169	Transcriptional regulator
FYB56_RS05165	COG1271	oxidase subunit
FYB56_RS05170	COG1294	oxidase, subunit
FYB56_RS05180	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB56_RS05210	COG0596	Alpha beta hydrolase
FYB56_RS05215	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FYB56_RS05250	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FYB56_RS05255	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FYB56_RS05265	COG2070	2-Nitropropane dioxygenase
FYB56_RS05280	COG2207	Transcriptional regulator
FYB56_RS05280	COG1917	Cupin 2, conserved barrel domain protein
FYB56_RS05300	COG2900	Belongs to the SlyX family
FYB56_RS05310	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB56_RS05340	COG0583	DNA-binding transcription factor activity
FYB56_RS05355	COG0583	DNA-binding transcription factor activity
FYB56_RS05380	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
FYB56_RS05390	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB56_RS05395	COG1845	cytochrome c oxidase, subunit III
FYB56_RS05400	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FYB56_RS05405	COG0640	Transcriptional regulator
FYB56_RS05470	COG1666	GTP binding
FYB56_RS05495	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS05505	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FYB56_RS05510	COG1845	cytochrome c oxidase, subunit III
FYB56_RS05515	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB56_RS05520	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FYB56_RS05525	COG0477	Major facilitator Superfamily
FYB56_RS05540	COG5006	permease, DMT superfamily
FYB56_RS05560	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FYB56_RS05575	COG3383	formate dehydrogenase (NAD+) activity
FYB56_RS05595	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FYB56_RS05600	COG0303	'Molybdopterin
FYB56_RS05605	COG0521	Mo-molybdopterin cofactor biosynthetic process
FYB56_RS05615	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
FYB56_RS05630	COG0412	Dienelactone hydrolase
FYB56_RS05640	COG0678	peroxiredoxin activity
FYB56_RS05650	COG0697	spore germination
FYB56_RS05695	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FYB56_RS05700	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
FYB56_RS05705	COG1335	isochorismatase
FYB56_RS05710	COG0523	cobalamin synthesis protein
FYB56_RS05715	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS05730	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS05740	COG1802	Transcriptional regulator
FYB56_RS05760	COG0667	Aldo Keto reductase
FYB56_RS05770	COG4535	Mg2 and Co2 transporter CorC
FYB56_RS05780	COG1702	phosphate starvation-inducible protein PhoH
FYB56_RS05795	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYB56_RS05800	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FYB56_RS05805	COG1862	Preprotein translocase
FYB56_RS05810	COG0343	queuine tRNA-ribosyltransferase activity
FYB56_RS05820	COG2027	D-alanyl-D-alanine carboxypeptidase
FYB56_RS05865	COG0741	lytic transglycosylase activity
FYB56_RS05870	COG0436	Aminotransferase
FYB56_RS05880	COG0280	phosphate acetyltransferase
FYB56_RS05880	COG0281	malic enzyme
FYB56_RS05890	COG2732	(Barnase) inhibitor
FYB56_RS05895	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FYB56_RS05900	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FYB56_RS05905	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FYB56_RS05915	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FYB56_RS05920	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FYB56_RS05935	COG0625	glutathione transferase activity
FYB56_RS05965	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
FYB56_RS05975	COG0306	phosphate transporter
FYB56_RS05980	COG0521	Mo-molybdopterin cofactor biosynthetic process
FYB56_RS05990	COG0739	heme binding
FYB56_RS06000	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FYB56_RS06050	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
FYB56_RS06070	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FYB56_RS06075	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FYB56_RS06080	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FYB56_RS06085	COG0009	L-threonylcarbamoyladenylate synthase
FYB56_RS06090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB56_RS06095	COG1414	Transcriptional regulator
FYB56_RS06110	COG0765	amino acid transport
FYB56_RS06115	COG1126	abc transporter atp-binding protein
FYB56_RS06135	COG0028	Belongs to the TPP enzyme family
FYB56_RS06140	COG0583	DNA-binding transcription factor activity
FYB56_RS06145	COG4974	Belongs to the 'phage' integrase family
FYB56_RS06150	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FYB56_RS06155	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
FYB56_RS06165	COG1686	Belongs to the peptidase S11 family
FYB56_RS06175	COG2814	Major facilitator Superfamily
FYB56_RS06190	COG1074	ATP-dependent DNA helicase activity
FYB56_RS06200	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FYB56_RS06215	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS06220	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FYB56_RS06230	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS06240	COG0505	Belongs to the CarA family
FYB56_RS06245	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FYB56_RS06275	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB56_RS06305	COG1053	succinate dehydrogenase
FYB56_RS06305	COG3976	FMN-binding domain protein
FYB56_RS06310	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS06340	COG3842	ATPase activity
FYB56_RS06350	COG0395	ABC-type sugar transport system, permease component
FYB56_RS06385	COG0420	3'-5' exonuclease activity
FYB56_RS06400	COG2111	Na H antiporter
FYB56_RS06400	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FYB56_RS06405	COG1006	Multisubunit Na H antiporter MnhC subunit
FYB56_RS06410	COG0651	ATP synthesis coupled electron transport
FYB56_RS06415	COG1863	multisubunit Na H antiporter MnhE subunit
FYB56_RS06420	COG2212	antiporter activity
FYB56_RS06440	COG0590	tRNA wobble adenosine to inosine editing
FYB56_RS06445	COG1619	proteins homologs of microcin C7 resistance protein MccF
FYB56_RS06450	COG1024	Enoyl-CoA hydratase
FYB56_RS06455	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB56_RS06465	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB56_RS06470	COG0488	(ABC) transporter
FYB56_RS06500	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB56_RS06505	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FYB56_RS06510	COG2252	PERMEase
FYB56_RS06520	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
FYB56_RS06560	COG0789	Transcriptional regulator
FYB56_RS06570	COG0678	peroxiredoxin activity
FYB56_RS06570	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FYB56_RS06580	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
FYB56_RS06585	COG0584	glycerophosphoryl diester phosphodiesterase
FYB56_RS06590	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYB56_RS06600	COG4181	ATPase activity
FYB56_RS06640	COG4336	lyase activity
FYB56_RS06655	COG2197	response regulator
FYB56_RS06665	COG3064	Membrane
FYB56_RS06665	COG3210	domain, Protein
FYB56_RS06665	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYB56_RS06675	COG3121	Chaperone
FYB56_RS06680	COG3188	usher protein
FYB56_RS06685	COG3539	Fimbrial protein
FYB56_RS06690	COG2831	hemolysin activation secretion protein
FYB56_RS06705	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB56_RS06730	COG0583	DNA-binding transcription factor activity
FYB56_RS06750	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB56_RS06755	COG0765	amino acid transport
FYB56_RS06760	COG1126	abc transporter atp-binding protein
FYB56_RS06765	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FYB56_RS06770	COG1758	RNA polymerase activity
FYB56_RS06775	COG0194	GDP metabolic process
FYB56_RS06780	COG3258	Cytochrome c
FYB56_RS06785	COG2863	cytochrome
FYB56_RS06790	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS06795	COG0791	NLP P60 protein
FYB56_RS06800	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FYB56_RS06840	COG5001	Diguanylate cyclase
FYB56_RS06840	COG5002	protein histidine kinase activity
FYB56_RS06850	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FYB56_RS06855	COG0174	glutamine synthetase
FYB56_RS06865	COG2204	response regulator
FYB56_RS06870	COG0583	DNA-binding transcription factor activity
FYB56_RS06875	COG1741	Belongs to the pirin family
FYB56_RS06880	COG1741	Belongs to the pirin family
FYB56_RS06885	COG3842	ATPase activity
FYB56_RS06895	COG1840	ABC-type Fe3 transport system, periplasmic component
FYB56_RS06905	COG0583	DNA-binding transcription factor activity
FYB56_RS06910	COG2814	Major facilitator Superfamily
FYB56_RS06915	COG0656	L-ascorbic acid biosynthetic process
FYB56_RS06920	COG3468	outer membrane autotransporter barrel domain protein
FYB56_RS06930	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FYB56_RS06935	COG0583	DNA-binding transcription factor activity
FYB56_RS06950	COG0783	Belongs to the Dps family
FYB56_RS06965	COG0463	Glycosyl transferase, family 2
FYB56_RS06985	COG0438	transferase activity, transferring glycosyl groups
FYB56_RS07000	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FYB56_RS07020	COG0300	oxidoreductase activity
FYB56_RS07035	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS07035	COG0604	alcohol dehydrogenase
FYB56_RS07035	COG3321	synthase
FYB56_RS07055	COG0395	ABC-type sugar transport system, permease component
FYB56_RS07060	COG1175	transmembrane transport
FYB56_RS07065	COG1653	transport
FYB56_RS07075	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
FYB56_RS07085	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB56_RS07105	COG1794	racemase activity, acting on amino acids and derivatives
FYB56_RS07110	COG0625	glutathione transferase activity
FYB56_RS07115	COG2133	pyrroloquinoline quinone binding
FYB56_RS07140	COG2363	Small membrane protein
FYB56_RS07155	COG1464	Belongs to the NlpA lipoprotein family
FYB56_RS07165	COG0688	phosphatidylethanolamine metabolic process
FYB56_RS07190	COG0625	glutathione transferase activity
FYB56_RS07195	COG0386	Belongs to the glutathione peroxidase family
FYB56_RS07235	COG2259	Doxx family
FYB56_RS07250	COG0667	Aldo Keto reductase
FYB56_RS07295	COG1640	4-alpha-glucanotransferase
FYB56_RS07345	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FYB56_RS07370	COG0747	negative chemotaxis
FYB56_RS07375	COG0601	transmembrane transport
FYB56_RS07380	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB56_RS07385	COG4172	Belongs to the ABC transporter superfamily
FYB56_RS07440	COG0425	Belongs to the sulfur carrier protein TusA family
FYB56_RS07465	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FYB56_RS07475	COG0642	Histidine kinase
FYB56_RS07480	COG0745	RESPONSE REGULATOR receiver
FYB56_RS07495	COG0105	UTP biosynthetic process
FYB56_RS07520	COG2976	Protein conserved in bacteria
FYB56_RS07525	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYB56_RS07530	COG1160	GTP binding
FYB56_RS07540	COG1923	regulation of RNA biosynthetic process
FYB56_RS07545	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FYB56_RS07550	COG0330	HflC and HflK could
FYB56_RS07555	COG0330	HflC and HflK could
FYB56_RS07575	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FYB56_RS07585	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FYB56_RS07645	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB56_RS07650	COG0683	leucine binding
FYB56_RS07655	COG4638	Rieske (2fe-2S)
FYB56_RS07665	COG1024	Enoyl-CoA hydratase
FYB56_RS07675	COG0633	Ferredoxin
FYB56_RS07680	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS07695	COG0183	Belongs to the thiolase family
FYB56_RS07705	COG4692	amylo-alpha-1,6-glucosidase activity
FYB56_RS07710	COG0583	DNA-binding transcription factor activity
FYB56_RS07730	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS07735	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS07750	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FYB56_RS07760	COG3829	transcription factor binding
FYB56_RS07790	COG0833	amino acid
FYB56_RS07810	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS07815	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FYB56_RS07820	COG0439	Biotin carboxylase
FYB56_RS07835	COG0395	ABC-type sugar transport system, permease component
FYB56_RS07840	COG1176	ABC-type spermidine putrescine transport system, permease component I
FYB56_RS07855	COG1414	Transcriptional regulator
FYB56_RS07860	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS07870	COG2188	Transcriptional regulator
FYB56_RS07895	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS07900	COG0583	DNA-binding transcription factor activity
FYB56_RS07920	COG1172	Belongs to the binding-protein-dependent transport system permease family
FYB56_RS07930	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB56_RS07940	COG1228	amidohydrolase
FYB56_RS07945	COG2267	carboxylic ester hydrolase activity
FYB56_RS07970	COG0861	Integral membrane protein TerC family
FYB56_RS07975	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS07990	COG1262	PFAM Formylglycine-generating sulfatase enzyme
FYB56_RS08030	COG3119	arylsulfatase activity
FYB56_RS08050	COG2197	response regulator
FYB56_RS08060	COG2944	sequence-specific DNA binding
FYB56_RS08065	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
FYB56_RS08070	COG0625	glutathione transferase activity
FYB56_RS08085	COG3119	arylsulfatase activity
FYB56_RS08100	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS08105	COG0183	Belongs to the thiolase family
FYB56_RS08120	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS08125	COG0583	DNA-binding transcription factor activity
FYB56_RS08130	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS08140	COG1024	Enoyl-CoA hydratase
FYB56_RS08150	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS08155	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB56_RS08155	COG1024	Enoyl-CoA hydratase
FYB56_RS08165	COG1454	alcohol dehydrogenase
FYB56_RS08170	COG0824	Thioesterase
FYB56_RS08195	COG0431	NADPH-dependent FMN reductase
FYB56_RS08225	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS08230	COG0583	DNA-binding transcription factor activity
FYB56_RS08255	COG0330	HflC and HflK could
FYB56_RS08270	COG3043	anaerobic respiration
FYB56_RS08275	COG3005	denitrification pathway
FYB56_RS08310	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB56_RS08340	COG4948	Mandelate Racemase Muconate Lactonizing
FYB56_RS08345	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS08375	COG0583	DNA-binding transcription factor activity
FYB56_RS08395	COG1695	Transcriptional regulator
FYB56_RS08405	COG3568	Endonuclease Exonuclease Phosphatase
FYB56_RS08415	COG0392	lysyltransferase activity
FYB56_RS08430	COG1546	Belongs to the CinA family
FYB56_RS08430	COG1058	Belongs to the CinA family
FYB56_RS08450	COG4575	ribosome binding
FYB56_RS08455	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
FYB56_RS08465	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS08520	COG0028	Belongs to the TPP enzyme family
FYB56_RS08525	COG2204	response regulator
FYB56_RS08530	COG2204	response regulator
FYB56_RS08575	COG0861	Integral membrane protein TerC family
FYB56_RS08580	COG0861	Integral membrane protein TerC family
FYB56_RS08585	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FYB56_RS08590	COG0045	succinate-CoA ligase (ADP-forming) activity
FYB56_RS08610	COG2137	regulation of response to DNA damage stimulus
FYB56_RS08615	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
FYB56_RS08625	COG0642	Histidine kinase
FYB56_RS08635	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB56_RS08635	COG1024	Enoyl-CoA hydratase
FYB56_RS08640	COG3842	ATPase activity
FYB56_RS08655	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS08670	COG0183	Belongs to the thiolase family
FYB56_RS08675	COG0583	DNA-binding transcription factor activity
FYB56_RS08680	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS08695	COG0540	Belongs to the ATCase OTCase family
FYB56_RS08730	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB56_RS08745	COG1522	sequence-specific DNA binding
FYB56_RS08755	COG2367	Beta-lactamase
FYB56_RS08770	COG0500	methyltransferase
FYB56_RS08810	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
FYB56_RS08815	COG0291	Belongs to the bacterial ribosomal protein bL35 family
FYB56_RS08835	COG0004	ammonium transporteR
FYB56_RS08850	COG1309	transcriptional regulator
FYB56_RS08885	COG0506	proline dehydrogenase activity
FYB56_RS08885	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYB56_RS08885	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FYB56_RS08895	COG3008	intermembrane lipid transfer
FYB56_RS08895	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FYB56_RS08900	COG2995	paraquat-inducible protein a
FYB56_RS08905	COG0542	response to heat
FYB56_RS08910	COG4953	penicillin-binding protein 1C
FYB56_RS08925	COG1278	Cold shock
FYB56_RS08935	COG0183	Belongs to the thiolase family
FYB56_RS08940	COG0038	chloride channel
FYB56_RS08945	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FYB56_RS08955	COG0811	peptide transport
FYB56_RS08960	COG0848	biopolymer transport protein
FYB56_RS08970	COG2835	tetraacyldisaccharide 4'-kinase activity
FYB56_RS08990	COG0728	peptidoglycan biosynthetic process
FYB56_RS09000	COG0268	Binds directly to 16S ribosomal RNA
FYB56_RS09020	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYB56_RS09025	COG2186	Transcriptional regulator
FYB56_RS09045	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FYB56_RS09055	COG0583	DNA-binding transcription factor activity
FYB56_RS09070	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FYB56_RS09080	COG3158	transport of potassium into the cell
FYB56_RS09085	COG0642	Histidine kinase
FYB56_RS09115	COG0776	regulation of translation
FYB56_RS09120	COG3128	pkhd-type hydroxylase
FYB56_RS09130	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYB56_RS09135	COG0557	exoribonuclease II activity
FYB56_RS09160	COG0679	Auxin Efflux Carrier
FYB56_RS09170	COG0069	glutamate synthase activity
FYB56_RS09175	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FYB56_RS09185	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
FYB56_RS09225	COG3706	GGDEF domain
FYB56_RS09260	COG3909	cytochrome
FYB56_RS09265	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FYB56_RS09270	COG0625	glutathione transferase activity
FYB56_RS09275	COG0730	response to heat
FYB56_RS09285	COG0583	DNA-binding transcription factor activity
FYB56_RS09325	COG2819	hydrolase of the alpha beta superfamily
FYB56_RS09330	COG0247	lactate metabolic process
FYB56_RS09340	COG0277	FAD linked oxidase domain protein
FYB56_RS09345	COG0277	FAD linked oxidase domain protein
FYB56_RS09350	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYB56_RS09350	COG3064	Membrane
FYB56_RS09350	COG3210	domain, Protein
FYB56_RS09350	COG3210	domain, Protein
FYB56_RS09350	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYB56_RS09350	COG3064	Membrane
FYB56_RS09355	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYB56_RS09360	COG0312	modulator of DNA gyrase
FYB56_RS09380	COG0308	aminopeptidase N
FYB56_RS09385	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
FYB56_RS09405	COG0436	Aminotransferase
FYB56_RS09410	COG3737	Protein of unknown function (DUF498/DUF598)
FYB56_RS09415	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FYB56_RS09420	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
FYB56_RS09425	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FYB56_RS09435	COG0305	Participates in initiation and elongation during chromosome replication
FYB56_RS09455	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
FYB56_RS09460	COG2965	DNA replication, synthesis of RNA primer
FYB56_RS09465	COG0360	Binds together with S18 to 16S ribosomal RNA
FYB56_RS09470	COG1469	GTP cyclohydrolase I activity
FYB56_RS09480	COG0142	geranyltranstransferase activity
FYB56_RS09485	COG1722	exodeoxyribonuclease VII activity
FYB56_RS09495	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS09530	COG1840	ABC-type Fe3 transport system, periplasmic component
FYB56_RS09535	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FYB56_RS09540	COG1178	ABC-type Fe3 transport system permease component
FYB56_RS09545	COG3842	ATPase activity
FYB56_RS09550	COG0583	DNA-binding transcription factor activity
FYB56_RS09570	COG0501	Belongs to the peptidase M48B family
FYB56_RS09580	COG0697	spore germination
FYB56_RS09590	COG1846	Transcriptional regulator
FYB56_RS09610	COG0473	3-isopropylmalate dehydrogenase activity
FYB56_RS09620	COG0747	negative chemotaxis
FYB56_RS09630	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB56_RS09640	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FYB56_RS09665	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS09675	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB56_RS09680	COG0433	COG0433 Predicted ATPase
FYB56_RS09690	COG0151	Belongs to the GarS family
FYB56_RS09705	COG0799	negative regulation of ribosome biogenesis
FYB56_RS09720	COG3468	outer membrane autotransporter barrel domain protein
FYB56_RS09760	COG0385	Bile acid
FYB56_RS09765	COG0427	acetyl-CoA hydrolase
FYB56_RS09770	COG0583	DNA-binding transcription factor activity
FYB56_RS09775	COG3264	Mechanosensitive ion channel
FYB56_RS09775	COG1511	domain protein
FYB56_RS09790	COG0730	response to heat
FYB56_RS09795	COG0697	spore germination
FYB56_RS09830	COG2885	chlorophyll binding
FYB56_RS09850	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FYB56_RS09855	COG3384	dioxygenase
FYB56_RS09870	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
FYB56_RS09875	COG3474	cytochrome
FYB56_RS09940	COG4964	Belongs to the GSP D family
FYB56_RS09990	COG4172	Belongs to the ABC transporter superfamily
FYB56_RS09995	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB56_RS10000	COG0601	transmembrane transport
FYB56_RS10005	COG0747	negative chemotaxis
FYB56_RS10015	COG0598	Magnesium transport protein CorA
FYB56_RS10035	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FYB56_RS10045	COG0483	inositol monophosphate 1-phosphatase activity
FYB56_RS10070	COG1045	serine acetyltransferase
FYB56_RS10075	COG0166	Belongs to the GPI family
FYB56_RS10090	COG2197	response regulator
FYB56_RS10105	COG0183	Belongs to the thiolase family
FYB56_RS10120	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB56_RS10120	COG1024	Enoyl-CoA hydratase
FYB56_RS10125	COG0183	Belongs to the thiolase family
FYB56_RS10135	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS10145	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS10160	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYB56_RS10160	COG1017	nitric oxide dioxygenase activity
FYB56_RS10165	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYB56_RS10165	COG2010	Cytochrome c
FYB56_RS10170	COG1335	isochorismatase
FYB56_RS10175	COG2309	aminopeptidase activity
FYB56_RS10180	COG0596	Alpha beta hydrolase
FYB56_RS10190	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYB56_RS10195	COG2080	2 iron, 2 sulfur cluster binding
FYB56_RS10225	COG1846	Transcriptional regulator
FYB56_RS10245	COG0726	polysaccharide deacetylase
FYB56_RS10245	COG1649	PFAM Uncharacterised BCR, COG1649
FYB56_RS10250	COG1215	transferase activity, transferring glycosyl groups
FYB56_RS10260	COG1902	pentaerythritol trinitrate reductase activity
FYB56_RS10285	COG0251	oxidation-reduction process
FYB56_RS10295	COG1832	CoA-binding protein
FYB56_RS10300	COG1414	Transcriptional regulator
FYB56_RS10305	COG1902	pentaerythritol trinitrate reductase activity
FYB56_RS10305	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYB56_RS10315	COG3842	ATPase activity
FYB56_RS10340	COG0583	DNA-binding transcription factor activity
FYB56_RS10350	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS10360	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYB56_RS10375	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB56_RS10400	COG0527	aspartate kinase activity
FYB56_RS10410	COG0825	malonyl-CoA metabolic process
FYB56_RS10425	COG3063	Type IV pilus biogenesis stability protein PilW
FYB56_RS10445	COG1253	flavin adenine dinucleotide binding
FYB56_RS10470	COG0668	transmembrane transport
FYB56_RS10505	COG3360	Dodecin
FYB56_RS10515	COG2850	peptidyl-arginine hydroxylation
FYB56_RS10525	COG3539	Fimbrial protein
FYB56_RS10530	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
FYB56_RS10535	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FYB56_RS10540	COG1994	Peptidase M50
FYB56_RS10545	COG0009	L-threonylcarbamoyladenylate synthase
FYB56_RS10550	COG2321	neutral zinc metallopeptidase
FYB56_RS10595	COG1366	Belongs to the anti-sigma-factor antagonist family
FYB56_RS10600	COG2172	sigma factor antagonist activity
FYB56_RS10605	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FYB56_RS10615	COG2208	phosphoserine phosphatase activity
FYB56_RS10615	COG2770	Histidine kinase
FYB56_RS10650	COG4792	protein secretion
FYB56_RS10655	COG4791	protein targeting
FYB56_RS10660	COG4794	Type iii secretion
FYB56_RS10700	COG4669	(LipO)protein
FYB56_RS10800	COG0251	oxidation-reduction process
FYB56_RS10840	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS10890	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB56_RS10905	COG0583	DNA-binding transcription factor activity
FYB56_RS10910	COG3971	2-oxopent-4-enoate hydratase activity
FYB56_RS10940	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB56_RS10955	COG0511	ligase activity, forming carbon-carbon bonds
FYB56_RS10965	COG0439	Biotin carboxylase
FYB56_RS10970	COG2188	Transcriptional regulator
FYB56_RS10995	COG0511	ligase activity, forming carbon-carbon bonds
FYB56_RS11005	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
FYB56_RS11015	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS11025	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
FYB56_RS11050	COG1132	(ABC) transporter
FYB56_RS11060	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FYB56_RS11100	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FYB56_RS11135	COG0583	DNA-binding transcription factor activity
FYB56_RS11155	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS11185	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB56_RS11200	COG1126	abc transporter atp-binding protein
FYB56_RS11205	COG0765	amino acid transport
FYB56_RS11210	COG4597	amino acid ABC transporter
FYB56_RS11215	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB56_RS11220	COG1473	amidohydrolase
FYB56_RS11225	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB56_RS11230	COG1522	sequence-specific DNA binding
FYB56_RS11240	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB56_RS11250	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB56_RS11255	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB56_RS11260	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FYB56_RS11280	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB56_RS11285	COG0154	amidase activity
FYB56_RS11295	COG1137	ATPase activity
FYB56_RS11325	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB56_RS11330	COG2072	flavoprotein involved in K transport
FYB56_RS11365	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB56_RS11395	COG0559	Belongs to the binding-protein-dependent transport system permease family
FYB56_RS11495	COG0248	Ppx GppA phosphatase
FYB56_RS11515	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FYB56_RS11525	COG1534	Rna-binding protein
FYB56_RS11535	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYB56_RS11540	COG0840	transmembrane signaling receptor activity
FYB56_RS11545	COG2233	PERMEase
FYB56_RS11560	COG3842	ATPase activity
FYB56_RS11570	COG0406	alpha-ribazole phosphatase activity
FYB56_RS11575	COG4221	oxidoreductase activity
FYB56_RS11590	COG0084	hydrolase, TatD family'
FYB56_RS11595	COG1136	(ABC) transporter
FYB56_RS11610	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FYB56_RS11620	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS11640	COG1022	Amp-dependent synthetase and ligase
FYB56_RS11670	COG1024	Enoyl-CoA hydratase
FYB56_RS11685	COG0633	Ferredoxin
FYB56_RS11700	COG0316	Belongs to the HesB IscA family
FYB56_RS11705	COG0822	iron-sulfur transferase activity
FYB56_RS11710	COG1104	cysteine desulfurase activity
FYB56_RS11720	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FYB56_RS11740	COG3468	outer membrane autotransporter barrel domain protein
FYB56_RS11750	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FYB56_RS11765	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS11770	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS11785	COG1024	Enoyl-CoA hydratase
FYB56_RS11800	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS11805	COG0583	DNA-binding transcription factor activity
FYB56_RS11810	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FYB56_RS11820	COG0740	serine-type endopeptidase activity
FYB56_RS11835	COG1278	Cold shock
FYB56_RS11845	COG1278	Cold shock
FYB56_RS11875	COG0436	Aminotransferase
FYB56_RS11890	COG2890	protein-(glutamine-N5) methyltransferase activity
FYB56_RS11895	COG0488	(ABC) transporter
FYB56_RS11900	COG4771	TonB-dependent receptor
FYB56_RS11905	COG0210	DNA helicase
FYB56_RS11920	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FYB56_RS11920	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FYB56_RS11925	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FYB56_RS11930	COG0196	riboflavin kinase activity
FYB56_RS11940	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
FYB56_RS11945	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FYB56_RS11955	COG1522	sequence-specific DNA binding
FYB56_RS11980	COG1126	abc transporter atp-binding protein
FYB56_RS11985	COG0765	amino acid transport
FYB56_RS11990	COG0765	amino acid transport
FYB56_RS11995	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB56_RS12005	COG2423	ornithine cyclodeaminase activity
FYB56_RS12010	COG1764	response to oxidative stress
FYB56_RS12020	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FYB56_RS12025	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FYB56_RS12040	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
FYB56_RS12045	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FYB56_RS12050	COG2197	response regulator
FYB56_RS12060	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FYB56_RS12120	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB56_RS12135	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FYB56_RS12160	COG1122	ATPase activity
FYB56_RS12190	COG0437	4 iron, 4 sulfur cluster binding
FYB56_RS12195	COG3383	formate dehydrogenase (NAD+) activity
FYB56_RS12195	COG0243	molybdopterin cofactor binding
FYB56_RS12225	COG0489	protein tyrosine kinase activity
FYB56_RS12230	COG0746	molybdenum cofactor guanylyltransferase activity
FYB56_RS12235	COG0303	'Molybdopterin
FYB56_RS12240	COG1763	Mo-molybdopterin cofactor biosynthetic process
FYB56_RS12255	COG5001	Diguanylate cyclase
FYB56_RS12260	COG2205	protein histidine kinase activity
FYB56_RS12265	COG0745	RESPONSE REGULATOR receiver
FYB56_RS12280	COG1295	ribonuclease BN
FYB56_RS12290	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FYB56_RS12320	COG4964	Belongs to the GSP D family
FYB56_RS12360	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB56_RS12395	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FYB56_RS12400	COG3395	kinase activity
FYB56_RS12440	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB56_RS12445	COG2358	TRAP transporter, solute receptor (TAXI family
FYB56_RS12455	COG2311	Membrane
FYB56_RS12480	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FYB56_RS12495	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FYB56_RS12500	COG1760	l-serine dehydratase
FYB56_RS12505	COG1283	sodium-dependent phosphate transmembrane transporter activity
FYB56_RS12510	COG0412	Dienelactone hydrolase
FYB56_RS12525	COG1611	Belongs to the LOG family
FYB56_RS12560	COG2251	uridine kinase activity
FYB56_RS12560	COG0195	Participates in both transcription termination and antitermination
FYB56_RS12570	COG1187	pseudouridine synthase activity
FYB56_RS12575	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
FYB56_RS12585	COG0583	DNA-binding transcription factor activity
FYB56_RS12595	COG0523	cobalamin synthesis protein
FYB56_RS12615	COG0625	glutathione transferase activity
FYB56_RS12620	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
FYB56_RS12625	COG1047	Peptidyl-prolyl cis-trans
FYB56_RS12685	COG2304	oxidoreductase activity
FYB56_RS12705	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FYB56_RS12710	COG1562	ergosterol biosynthetic process
FYB56_RS12715	COG1562	ergosterol biosynthetic process
FYB56_RS12720	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
FYB56_RS12720	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
FYB56_RS12740	COG1131	(ABC) transporter
FYB56_RS12775	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
FYB56_RS12790	COG5564	TIM-barrel signal transduction protein
FYB56_RS12805	COG3468	outer membrane autotransporter barrel domain protein
FYB56_RS12815	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FYB56_RS12830	COG0494	nUDIX hydrolase
FYB56_RS12835	COG3530	Putative quorum-sensing-regulated virulence factor
FYB56_RS12845	COG1595	DNA-templated transcription, initiation
FYB56_RS12850	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB56_RS12885	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB56_RS12890	COG0765	amino acid transport
FYB56_RS12895	COG0765	amino acid transport
FYB56_RS12925	COG2841	Protein conserved in bacteria
FYB56_RS12930	COG2814	Major facilitator Superfamily
FYB56_RS12945	COG0628	permease
FYB56_RS12950	COG0842	Transport permease protein
FYB56_RS12955	COG1131	(ABC) transporter
FYB56_RS13000	COG3278	Belongs to the heme-copper respiratory oxidase family
FYB56_RS13030	COG4106	trans-aconitate 2-methyltransferase activity
FYB56_RS13030	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FYB56_RS13035	COG1380	Effector of murein hydrolase LrgA
FYB56_RS13040	COG1346	cytolysis
FYB56_RS13050	COG2224	Isocitrate lyase
FYB56_RS13065	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FYB56_RS13085	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
FYB56_RS13100	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB56_RS13125	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FYB56_RS13140	COG2032	superoxide dismutase activity
FYB56_RS13150	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS13155	COG1024	Enoyl-CoA hydratase
FYB56_RS13165	COG1802	Transcriptional regulator
FYB56_RS13175	COG0183	Belongs to the thiolase family
FYB56_RS13180	COG1942	4-Oxalocrotonate Tautomerase
FYB56_RS13190	COG4176	ABC-type proline glycine betaine transport system permease component
FYB56_RS13200	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FYB56_RS13205	COG2814	Major facilitator Superfamily
FYB56_RS13210	COG0227	Belongs to the bacterial ribosomal protein bL28 family
FYB56_RS13215	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FYB56_RS13235	COG2814	Major facilitator Superfamily
FYB56_RS13265	COG0154	amidase activity
FYB56_RS13270	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB56_RS13310	COG1530	ribonuclease E activity
FYB56_RS13315	COG0077	Prephenate dehydratase
FYB56_RS13335	COG0859	PFAM glycosyl transferase family 9
FYB56_RS13360	COG2194	sulfuric ester hydrolase activity
FYB56_RS13365	COG0438	transferase activity, transferring glycosyl groups
FYB56_RS13370	COG0463	Glycosyl transferase, family 2
FYB56_RS13375	COG0726	polysaccharide deacetylase
FYB56_RS13380	COG0438	transferase activity, transferring glycosyl groups
FYB56_RS13395	COG1643	Atp-dependent helicase
FYB56_RS13400	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FYB56_RS13400	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
FYB56_RS13405	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
FYB56_RS13415	COG0704	Plays a role in the regulation of phosphate uptake
FYB56_RS13425	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS13450	COG1177	transmembrane transport
FYB56_RS13455	COG1176	ABC-type spermidine putrescine transport system, permease component I
FYB56_RS13460	COG3842	ATPase activity
FYB56_RS13465	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FYB56_RS13480	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
FYB56_RS13485	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB56_RS13500	COG3539	Fimbrial protein
FYB56_RS13505	COG3539	Fimbrial protein
FYB56_RS13520	COG2050	protein possibly involved in aromatic compounds catabolism
FYB56_RS13525	COG1024	Enoyl-CoA hydratase
FYB56_RS13530	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS13535	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FYB56_RS13540	COG2151	metal-sulfur cluster biosynthetic enzyme
FYB56_RS13545	COG3396	Phenylacetate-CoA oxygenase
FYB56_RS13550	COG3460	Phenylacetate-CoA oxygenase
FYB56_RS13555	COG3396	Phenylacetate-CoA oxygenase
FYB56_RS13560	COG3327	negative regulation of DNA-templated transcription, initiation
FYB56_RS13570	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
FYB56_RS13575	COG0501	Belongs to the peptidase M48B family
FYB56_RS13580	COG1162	GTPase activity
FYB56_RS13585	COG0667	Aldo Keto reductase
FYB56_RS13595	COG0335	large ribosomal subunit rRNA binding
FYB56_RS13625	COG0175	sulfate reduction
FYB56_RS13635	COG4208	sulfate ABC transporter
FYB56_RS13655	COG0602	queuosine metabolic process
FYB56_RS13660	COG0720	synthase
FYB56_RS13665	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB56_RS13670	COG0235	Class ii aldolase
FYB56_RS13695	COG1566	PFAM secretion protein HlyD family protein
FYB56_RS13705	COG0400	carboxylic ester hydrolase activity
FYB56_RS13730	COG1959	2 iron, 2 sulfur cluster binding
FYB56_RS13770	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FYB56_RS13785	COG0667	Aldo Keto reductase
FYB56_RS13795	COG5265	(ABC) transporter
FYB56_RS13825	COG3468	outer membrane autotransporter barrel domain protein
FYB56_RS13830	COG3468	outer membrane autotransporter barrel domain protein
FYB56_RS13850	COG5002	protein histidine kinase activity
FYB56_RS13850	COG3447	MASE1 domain protein
FYB56_RS13850	COG5001	Diguanylate cyclase
FYB56_RS13855	COG0840	transmembrane signaling receptor activity
FYB56_RS13860	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FYB56_RS13865	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FYB56_RS13895	COG0583	DNA-binding transcription factor activity
FYB56_RS13905	COG2814	Major facilitator Superfamily
FYB56_RS13930	COG2084	Dehydrogenase
FYB56_RS13935	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS13945	COG1253	flavin adenine dinucleotide binding
FYB56_RS13960	COG2988	succinylglutamate desuccinylase activity
FYB56_RS13985	COG0861	Integral membrane protein TerC family
FYB56_RS13995	COG1595	DNA-templated transcription, initiation
FYB56_RS14025	COG3189	MarR family transcriptional regulator
FYB56_RS14055	COG0028	Belongs to the TPP enzyme family
FYB56_RS14065	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS14070	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FYB56_RS14080	COG1126	abc transporter atp-binding protein
FYB56_RS14105	COG0084	hydrolase, TatD family'
FYB56_RS14110	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FYB56_RS14115	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FYB56_RS14120	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FYB56_RS14145	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FYB56_RS14150	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS14160	COG2867	negative regulation of translational initiation
FYB56_RS14175	COG0330	HflC and HflK could
FYB56_RS14200	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FYB56_RS14205	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FYB56_RS14230	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
FYB56_RS14235	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYB56_RS14240	COG0750	zinc metalloprotease
FYB56_RS14255	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FYB56_RS14260	COG0233	cytoplasmic translational termination
FYB56_RS14275	COG0052	Belongs to the universal ribosomal protein uS2 family
FYB56_RS14280	COG0024	Methionine aminopeptidase
FYB56_RS14315	COG0285	dihydrofolate synthase activity
FYB56_RS14345	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FYB56_RS14355	COG1677	Flagellar hook-basal body complex protein FliE
FYB56_RS14365	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FYB56_RS14370	COG1317	bacterial-type flagellum organization
FYB56_RS14375	COG1157	protein secretion by the type III secretion system
FYB56_RS14390	COG1580	Controls the rotational direction of flagella during chemotaxis
FYB56_RS14410	COG1338	Plays a role in the flagellum-specific transport system
FYB56_RS14430	COG0840	transmembrane signaling receptor activity
FYB56_RS14440	COG1256	bacterial-type flagellum assembly
FYB56_RS14470	COG1749	Flagellar hook protein flgE
FYB56_RS14480	COG1558	bacterial-type flagellum-dependent cell motility
FYB56_RS14485	COG1815	bacterial-type flagellum-dependent cell motility
FYB56_RS14520	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
FYB56_RS14525	COG0745	RESPONSE REGULATOR receiver
FYB56_RS14535	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FYB56_RS14540	COG0840	transmembrane signaling receptor activity
FYB56_RS14550	COG0643	Histidine kinase
FYB56_RS14550	COG2198	Histidine kinase
FYB56_RS14555	COG0745	RESPONSE REGULATOR receiver
FYB56_RS14585	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FYB56_RS14590	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYB56_RS14595	COG0508	dehydrogenase complex catalyzes the overall conversion of
FYB56_RS14600	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
FYB56_RS14610	COG4566	intracellular signal transduction
FYB56_RS14615	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
FYB56_RS14620	COG0339	signal peptide processing
FYB56_RS14625	COG1999	signal sequence binding
FYB56_RS14645	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB56_RS14655	COG1187	pseudouridine synthase activity
FYB56_RS14660	COG3161	chorismate lyase activity
FYB56_RS14675	COG1280	lysine exporter protein (LysE YggA)
FYB56_RS14690	COG0601	transmembrane transport
FYB56_RS14695	COG0747	negative chemotaxis
FYB56_RS14740	COG0668	transmembrane transport
FYB56_RS14745	COG0165	Argininosuccinate lyase
FYB56_RS14755	COG0789	Transcriptional regulator
FYB56_RS14765	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB56_RS14775	COG1126	abc transporter atp-binding protein
FYB56_RS14785	COG2346	COG2346, Truncated hemoglobins
FYB56_RS14845	COG1335	isochorismatase
FYB56_RS14870	COG2837	iron assimilation
FYB56_RS14900	COG4691	Plasmid stability protein
FYB56_RS14935	COG0583	DNA-binding transcription factor activity
FYB56_RS14940	COG2814	Major facilitator Superfamily
FYB56_RS14950	COG0501	Belongs to the peptidase M48B family
FYB56_RS14960	COG0583	DNA-binding transcription factor activity
FYB56_RS14970	COG2188	Transcriptional regulator
FYB56_RS14985	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FYB56_RS14995	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS15000	COG0129	dihydroxy-acid dehydratase activity
FYB56_RS15015	COG0129	dihydroxy-acid dehydratase activity
FYB56_RS15025	COG3622	Belongs to the hyi family
FYB56_RS15030	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYB56_RS15035	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB56_RS15050	COG0583	DNA-binding transcription factor activity
FYB56_RS15055	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB56_RS15060	COG3246	L-lysine catabolic process to acetate
FYB56_RS15095	COG0697	spore germination
FYB56_RS15110	COG0625	glutathione transferase activity
FYB56_RS15130	COG1280	lysine exporter protein (LysE YggA)
FYB56_RS15135	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FYB56_RS15170	COG2207	Transcriptional regulator
FYB56_RS15210	COG1132	(ABC) transporter
FYB56_RS15235	COG0659	secondary active sulfate transmembrane transporter activity
FYB56_RS15270	COG5507	3-demethylubiquinone-9 3-methyltransferase
FYB56_RS15275	COG0384	phenazine biosynthesis protein PhzF
FYB56_RS15280	COG0583	DNA-binding transcription factor activity
FYB56_RS15285	COG2733	membrane
FYB56_RS15300	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS15305	COG3284	Transcriptional regulator
FYB56_RS15310	COG0656	L-ascorbic acid biosynthetic process
FYB56_RS15335	COG0842	Transport permease protein
FYB56_RS15355	COG1802	Transcriptional regulator
FYB56_RS15375	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS15380	COG2188	Transcriptional regulator
FYB56_RS15405	COG0789	Transcriptional regulator
FYB56_RS15420	COG1609	Transcriptional regulator
FYB56_RS15425	COG4172	Belongs to the ABC transporter superfamily
FYB56_RS15435	COG0601	transmembrane transport
FYB56_RS15440	COG0747	negative chemotaxis
FYB56_RS15455	COG1280	lysine exporter protein (LysE YggA)
FYB56_RS15490	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS15495	COG2079	MmgE PrpD family protein
FYB56_RS15515	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS15530	COG3618	amidohydrolase
FYB56_RS15545	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
FYB56_RS15560	COG0625	glutathione transferase activity
FYB56_RS15575	COG2814	Major facilitator Superfamily
FYB56_RS15580	COG0477	Major facilitator Superfamily
FYB56_RS15600	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FYB56_RS15605	COG1061	Type III restriction enzyme res subunit
FYB56_RS15645	COG2197	response regulator
FYB56_RS15650	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
FYB56_RS15670	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB56_RS15690	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS15710	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
FYB56_RS15710	COG3210	domain, Protein
FYB56_RS15710	COG3064	Membrane
FYB56_RS15715	COG0047	phosphoribosylformylglycinamidine synthase activity
FYB56_RS15715	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FYB56_RS15720	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FYB56_RS15740	COG0613	PHP domain protein
FYB56_RS15770	COG0450	alkyl hydroperoxide reductase
FYB56_RS15775	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS15790	COG0123	including yeast histone deacetylase and acetoin utilization protein
FYB56_RS15795	COG2951	lytic endotransglycosylase activity
FYB56_RS15815	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
FYB56_RS15820	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
FYB56_RS15850	COG0287	Prephenate dehydrogenase
FYB56_RS15885	COG2814	Major facilitator Superfamily
FYB56_RS15950	COG0583	DNA-binding transcription factor activity
FYB56_RS15965	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB56_RS15990	COG1053	succinate dehydrogenase
FYB56_RS15995	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS16000	COG2079	MmgE PrpD family protein
FYB56_RS16010	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS16035	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
FYB56_RS16035	COG0028	Belongs to the TPP enzyme family
FYB56_RS16040	COG0436	Aminotransferase
FYB56_RS16060	COG0778	Nitroreductase
FYB56_RS16065	COG2814	Major facilitator Superfamily
FYB56_RS16070	COG3706	GGDEF domain
FYB56_RS16075	COG0589	response to stress
FYB56_RS16085	COG2951	lytic endotransglycosylase activity
FYB56_RS16090	COG2833	Protein of unknown function (DUF455)
FYB56_RS16105	COG1132	(ABC) transporter
FYB56_RS16115	COG1181	Belongs to the D-alanine--D-alanine ligase family
FYB56_RS16115	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FYB56_RS16120	COG3237	CsbD-like
FYB56_RS16130	COG2823	Periplasmic or secreted lipoprotein
FYB56_RS16150	COG0672	)-iron permease
FYB56_RS16165	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
FYB56_RS16170	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS16175	COG3243	poly(R)-hydroxyalkanoic acid synthase
FYB56_RS16185	COG0564	pseudouridine synthase activity
FYB56_RS16195	COG1199	ATP-dependent helicase activity
FYB56_RS16200	COG2183	response to ionizing radiation
FYB56_RS16225	COG4774	siderophore transport
FYB56_RS16235	COG1595	DNA-templated transcription, initiation
FYB56_RS16240	COG2175	clavaminate synthase activity
FYB56_RS16250	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS16255	COG0583	DNA-binding transcription factor activity
FYB56_RS16260	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS16265	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
FYB56_RS16270	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYB56_RS16275	COG0508	dehydrogenase complex catalyzes the overall conversion of
FYB56_RS16280	COG0567	Dehydrogenase, E1 component
FYB56_RS16290	COG1522	sequence-specific DNA binding
FYB56_RS16300	COG0281	malic enzyme
FYB56_RS16300	COG0280	phosphate acetyltransferase
FYB56_RS16305	COG3539	Fimbrial protein
FYB56_RS16320	COG0372	Belongs to the citrate synthase family
FYB56_RS16325	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
FYB56_RS16330	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FYB56_RS16335	COG1053	succinate dehydrogenase
FYB56_RS16340	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
FYB56_RS16345	COG2009	succinate dehydrogenase
FYB56_RS16350	COG2188	Transcriptional regulator
FYB56_RS16355	COG0039	L-malate dehydrogenase activity
FYB56_RS16375	COG2828	Protein conserved in bacteria
FYB56_RS16410	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB56_RS16420	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
FYB56_RS16455	COG0148	phosphopyruvate hydratase activity
FYB56_RS16465	COG2877	3-deoxy-8-phosphooctulonate synthase activity
FYB56_RS16470	COG0504	CTP synthase activity
FYB56_RS16490	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB56_RS16500	COG0747	negative chemotaxis
FYB56_RS16505	COG4172	Belongs to the ABC transporter superfamily
FYB56_RS16510	COG1446	asparaginase
FYB56_RS16540	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FYB56_RS16555	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
FYB56_RS16560	COG0697	spore germination
FYB56_RS16565	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB56_RS16575	COG3193	protein, possibly involved in utilization of glycolate and propanediol
FYB56_RS16580	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FYB56_RS16585	COG0791	NLP P60 protein
FYB56_RS16595	COG0583	DNA-binding transcription factor activity
FYB56_RS16610	COG0583	DNA-binding transcription factor activity
FYB56_RS16635	COG0670	Belongs to the BI1 family
FYB56_RS16640	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS16650	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FYB56_RS16660	COG1381	Involved in DNA repair and RecF pathway recombination
FYB56_RS16665	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FYB56_RS16670	COG0571	ribonuclease III activity
FYB56_RS16675	COG0681	Belongs to the peptidase S26 family
FYB56_RS16685	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FYB56_RS16710	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FYB56_RS16715	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FYB56_RS16740	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FYB56_RS16745	COG1399	metal-binding, possibly nucleic acid-binding protein
FYB56_RS16760	COG3023	N-Acetylmuramoyl-L-alanine amidase
FYB56_RS16770	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FYB56_RS16775	COG0546	phosphoglycolate phosphatase activity
FYB56_RS16785	COG1530	ribonuclease E activity
FYB56_RS16795	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FYB56_RS16800	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
FYB56_RS16825	COG3228	Belongs to the MtfA family
FYB56_RS16835	COG0251	oxidation-reduction process
FYB56_RS16845	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
FYB56_RS16860	COG2878	Part of a membrane complex involved in electron transport
FYB56_RS16865	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FYB56_RS16900	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FYB56_RS16925	COG1268	BioY protein
FYB56_RS16930	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FYB56_RS16935	COG1122	ATPase activity
FYB56_RS16940	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FYB56_RS16950	COG0271	Belongs to the BolA IbaG family
FYB56_RS16955	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FYB56_RS16970	COG1196	nuclear chromosome segregation
FYB56_RS16975	COG0477	Major facilitator Superfamily
FYB56_RS16980	COG1573	uracil-dna glycosylase
FYB56_RS16985	COG1214	PFAM Peptidase M22, glycoprotease
FYB56_RS16990	COG0745	RESPONSE REGULATOR receiver
FYB56_RS16995	COG2205	protein histidine kinase activity
FYB56_RS17000	COG0450	alkyl hydroperoxide reductase
FYB56_RS17005	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB56_RS17020	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
FYB56_RS17030	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FYB56_RS17035	COG0560	Phosphoserine phosphatase
FYB56_RS17040	COG0583	DNA-binding transcription factor activity
FYB56_RS17045	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS17050	COG0028	Belongs to the TPP enzyme family
FYB56_RS17075	COG4774	siderophore transport
FYB56_RS17085	COG1007	ATP synthesis coupled electron transport
FYB56_RS17100	COG0713	ATP synthesis coupled electron transport
FYB56_RS17110	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYB56_RS17115	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
FYB56_RS17120	COG1034	ATP synthesis coupled electron transport
FYB56_RS17130	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
FYB56_RS17145	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYB56_RS17150	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FYB56_RS17155	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB56_RS17175	COG0671	phosphoesterase, PA-phosphatase related
FYB56_RS17185	COG1597	lipid kinase activity
FYB56_RS17190	COG0583	DNA-binding transcription factor activity
FYB56_RS17195	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FYB56_RS17200	COG1733	regulation of RNA biosynthetic process
FYB56_RS17205	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FYB56_RS17225	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
FYB56_RS17245	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB56_RS17265	COG3608	succinylglutamate desuccinylase aspartoacylase
FYB56_RS17270	COG0626	cystathionine gamma-synthase activity
FYB56_RS17275	COG0583	DNA-binding transcription factor activity
FYB56_RS17285	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS17290	COG0165	Argininosuccinate lyase
FYB56_RS17305	COG3799	methylaspartate ammonia-lyase activity
FYB56_RS17315	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FYB56_RS17325	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FYB56_RS17330	COG0149	triose-phosphate isomerase activity
FYB56_RS17350	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB56_RS17360	COG1185	polyribonucleotide nucleotidyltransferase activity
FYB56_RS17365	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
FYB56_RS17375	COG1183	phosphatidylcholine synthase activity
FYB56_RS17385	COG0440	acetolactate synthase activity
FYB56_RS17390	COG0028	Belongs to the TPP enzyme family
FYB56_RS17395	COG1289	transmembrane transporter activity
FYB56_RS17405	COG3022	response to hydroperoxide
FYB56_RS17410	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS17425	COG3486	L-lysine 6-monooxygenase (NADPH) activity
FYB56_RS17455	COG2814	Major facilitator Superfamily
FYB56_RS17475	COG3706	GGDEF domain
FYB56_RS17510	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FYB56_RS17520	COG1674	ftsk spoiiie
FYB56_RS17525	COG0492	ferredoxin-NADP+ reductase activity
FYB56_RS17530	COG1193	negative regulation of DNA recombination
FYB56_RS17540	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FYB56_RS17560	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
FYB56_RS17565	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
FYB56_RS17570	COG2205	protein histidine kinase activity
FYB56_RS17575	COG0745	RESPONSE REGULATOR receiver
FYB56_RS17610	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FYB56_RS17630	COG0612	Peptidase, M16
FYB56_RS17650	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
FYB56_RS17665	COG1420	regulation of RNA biosynthetic process
FYB56_RS17675	COG0497	DNA recombination
FYB56_RS17685	COG0735	belongs to the Fur family
FYB56_RS17690	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FYB56_RS17735	COG0404	The glycine cleavage system catalyzes the degradation of glycine
FYB56_RS17735	COG0446	pyridine nucleotide-disulphide oxidoreductase
FYB56_RS17740	COG4311	Sarcosine oxidase, delta subunit
FYB56_RS17745	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB56_RS17755	COG0583	DNA-binding transcription factor activity
FYB56_RS17775	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS17780	COG2030	dehydratase
FYB56_RS17790	COG1024	Enoyl-CoA hydratase
FYB56_RS17815	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FYB56_RS17840	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FYB56_RS17855	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB56_RS17865	COG0405	Gamma-glutamyltransferase
FYB56_RS17880	COG1280	lysine exporter protein (LysE YggA)
FYB56_RS17910	COG0583	DNA-binding transcription factor activity
FYB56_RS17950	COG1414	Transcriptional regulator
FYB56_RS17955	COG1058	Belongs to the CinA family
FYB56_RS17955	COG1546	Belongs to the CinA family
FYB56_RS17970	COG0513	Belongs to the DEAD box helicase family
FYB56_RS18000	COG0429	hydrolase of the alpha beta-hydrolase fold
FYB56_RS18005	COG4783	chaperone-mediated protein folding
FYB56_RS18020	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB56_RS18035	COG0006	proline dipeptidase activity
FYB56_RS18045	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYB56_RS18090	COG0514	ATP-dependent DNA helicase (RecQ)
FYB56_RS18100	COG0745	RESPONSE REGULATOR receiver
FYB56_RS18115	COG1271	oxidase subunit
FYB56_RS18130	COG2894	cell division
FYB56_RS18135	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
FYB56_RS18150	COG0488	(ABC) transporter
FYB56_RS18175	COG4608	Belongs to the ABC transporter superfamily
FYB56_RS18180	COG0444	Belongs to the ABC transporter superfamily
FYB56_RS18185	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB56_RS18190	COG0601	transmembrane transport
FYB56_RS18200	COG1215	transferase activity, transferring glycosyl groups
FYB56_RS18210	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FYB56_RS18220	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FYB56_RS18235	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS18240	COG2188	Transcriptional regulator
FYB56_RS18245	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FYB56_RS18250	COG2814	Major facilitator Superfamily
FYB56_RS18260	COG0259	pyridoxamine-phosphate oxidase activity
FYB56_RS18265	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FYB56_RS18280	COG0583	DNA-binding transcription factor activity
FYB56_RS18285	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS18295	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS18300	COG0405	Gamma-glutamyltransferase
FYB56_RS18310	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS18325	COG0802	atpase or kinase
FYB56_RS18330	COG0860	N-Acetylmuramoyl-L-alanine amidase
FYB56_RS18335	COG0586	Pfam SNARE associated Golgi protein
FYB56_RS18365	COG0617	tRNA 3'-terminal CCA addition
FYB56_RS18390	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB56_RS18395	COG2188	Transcriptional regulator
FYB56_RS18405	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FYB56_RS18410	COG1234	tRNA 3'-trailer cleavage
FYB56_RS18415	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS18425	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS18430	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS18435	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYB56_RS18440	COG2301	Belongs to the HpcH HpaI aldolase family
FYB56_RS18450	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
FYB56_RS18460	COG1024	Enoyl-CoA hydratase
FYB56_RS18470	COG2188	Transcriptional regulator
FYB56_RS18475	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FYB56_RS18480	COG0066	3-isopropylmalate dehydratase activity
FYB56_RS18495	COG0752	glycyl-tRNA synthetase alpha subunit
FYB56_RS18500	COG0751	glycine-tRNA ligase activity
FYB56_RS18505	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FYB56_RS18510	COG0204	Acyl-transferase
FYB56_RS18525	COG0242	peptide deformylase activity
FYB56_RS18530	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS18535	COG0700	Nucleoside recognition
FYB56_RS18540	COG0469	pyruvate kinase activity
FYB56_RS18570	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FYB56_RS18580	COG2154	pterin-4-alpha-carbinolamine dehydratase
FYB56_RS18600	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FYB56_RS18605	COG0154	amidase activity
FYB56_RS18615	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB56_RS18625	COG0747	negative chemotaxis
FYB56_RS18640	COG0019	diaminopimelate decarboxylase activity
FYB56_RS18655	COG3712	iron ion homeostasis
FYB56_RS18660	COG4774	siderophore transport
FYB56_RS18665	COG2353	YceI-like domain
FYB56_RS18670	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FYB56_RS18685	COG0583	DNA-binding transcription factor activity
FYB56_RS18705	COG3384	dioxygenase
FYB56_RS18710	COG0179	Fumarylacetoacetate (FAA) hydrolase
FYB56_RS18740	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS18745	COG1309	transcriptional regulator
FYB56_RS18750	COG2982	Protein involved in outer membrane biogenesis
FYB56_RS18755	COG2818	Glycosylase
FYB56_RS18775	COG1653	transport
FYB56_RS18780	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FYB56_RS18785	COG3842	ATPase activity
FYB56_RS18790	COG0395	ABC-type sugar transport system, permease component
FYB56_RS18815	COG2186	Transcriptional regulator
FYB56_RS18835	COG1454	alcohol dehydrogenase
FYB56_RS18850	COG2011	ABC-type metal ion transport system permease component
FYB56_RS18855	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FYB56_RS18860	COG1501	Belongs to the glycosyl hydrolase 31 family
FYB56_RS18875	COG0318	PFAM AMP-dependent synthetase and ligase
FYB56_RS18880	COG1473	amidohydrolase
FYB56_RS18890	COG2855	membrane
FYB56_RS18900	COG2239	Acts as a magnesium transporter
FYB56_RS18915	COG1522	sequence-specific DNA binding
FYB56_RS18920	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB56_RS18925	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS18950	COG0739	heme binding
FYB56_RS18960	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
FYB56_RS18965	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FYB56_RS18975	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FYB56_RS19005	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FYB56_RS19010	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FYB56_RS19020	COG3116	cell division
FYB56_RS19025	COG0275	rRNA processing
FYB56_RS19030	COG2001	Belongs to the MraZ family
FYB56_RS19045	COG0418	dihydroorotase activity
FYB56_RS19050	COG1473	amidohydrolase
FYB56_RS19100	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FYB56_RS19105	COG4654	Cytochrome c, class I
FYB56_RS19160	COG2084	Dehydrogenase
FYB56_RS19205	COG0824	Thioesterase
FYB56_RS19210	COG0811	peptide transport
FYB56_RS19215	COG0848	biopolymer transport protein
FYB56_RS19240	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYB56_RS19245	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
FYB56_RS19250	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS19265	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FYB56_RS19290	COG0183	Belongs to the thiolase family
FYB56_RS19300	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS19305	COG0583	DNA-binding transcription factor activity
FYB56_RS19310	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS19315	COG1024	Enoyl-CoA hydratase
FYB56_RS19320	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS19325	COG1253	flavin adenine dinucleotide binding
FYB56_RS19330	COG1285	pathogenesis
FYB56_RS19355	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FYB56_RS19360	COG0697	spore germination
FYB56_RS19370	COG1073	alpha beta
FYB56_RS19395	COG0463	Glycosyl transferase, family 2
FYB56_RS19405	COG0786	glutamate:sodium symporter activity
FYB56_RS19415	COG2031	fatty acid transporter
FYB56_RS19430	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FYB56_RS19435	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FYB56_RS19445	COG0328	RNA-DNA hybrid ribonuclease activity
FYB56_RS19450	COG2226	methyltransferase
FYB56_RS19455	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FYB56_RS19460	COG1388	LysM domain
FYB56_RS19460	COG0741	lytic transglycosylase activity
FYB56_RS19475	COG2979	Protein of unknown function (DUF533)
FYB56_RS19495	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS19510	COG3119	arylsulfatase activity
FYB56_RS19535	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
FYB56_RS19555	COG0832	Belongs to the urease beta subunit family
FYB56_RS19565	COG0831	urea catabolic process
FYB56_RS19570	COG0829	nickel cation binding
FYB56_RS19585	COG0633	Ferredoxin
FYB56_RS19600	COG2188	Transcriptional regulator
FYB56_RS19605	COG3799	methylaspartate ammonia-lyase activity
FYB56_RS19625	COG2719	SpoVR family
FYB56_RS19630	COG2718	Belongs to the UPF0229 family
FYB56_RS19635	COG2766	serine protein kinase
FYB56_RS19640	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FYB56_RS19640	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FYB56_RS19650	COG4977	sequence-specific DNA binding
FYB56_RS19655	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
FYB56_RS19685	COG0316	Belongs to the HesB IscA family
FYB56_RS19705	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
FYB56_RS19710	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FYB56_RS19715	COG0312	modulator of DNA gyrase
FYB56_RS19735	COG1116	anion transmembrane transporter activity
FYB56_RS19740	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS19745	COG1335	isochorismatase
FYB56_RS19750	COG0346	lactoylglutathione lyase activity
FYB56_RS19755	COG0513	Belongs to the DEAD box helicase family
FYB56_RS19765	COG1802	Transcriptional regulator
FYB56_RS19770	COG0045	succinate-CoA ligase (ADP-forming) activity
FYB56_RS19770	COG1042	CoA-binding domain protein
FYB56_RS19770	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FYB56_RS19790	COG1522	sequence-specific DNA binding
FYB56_RS19820	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FYB56_RS19825	COG1696	Membrane protein involved in D-alanine export
FYB56_RS19845	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FYB56_RS19860	COG0439	Biotin carboxylase
FYB56_RS19865	COG0511	ligase activity, forming carbon-carbon bonds
FYB56_RS19870	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
FYB56_RS19875	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FYB56_RS19880	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FYB56_RS19885	COG3150	esterase
FYB56_RS19890	COG0557	exoribonuclease II activity
FYB56_RS19905	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FYB56_RS19940	COG1678	Uncharacterized ACR, COG1678
FYB56_RS19955	COG0352	thiamine-phosphate diphosphorylase activity
FYB56_RS19985	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS19995	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS20055	COG0494	nUDIX hydrolase
FYB56_RS20080	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
FYB56_RS20105	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
FYB56_RS20110	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
FYB56_RS20140	COG1126	abc transporter atp-binding protein
FYB56_RS20145	COG0765	amino acid transport
FYB56_RS20150	COG4597	amino acid ABC transporter
FYB56_RS20155	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB56_RS20160	COG2884	Cell division ATP-binding protein ftsE
FYB56_RS20165	COG2177	Part of the ABC transporter FtsEX involved in
FYB56_RS20180	COG1194	a g-specific adenine glycosylase
FYB56_RS20200	COG4206	TonB-dependent receptor
FYB56_RS20205	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FYB56_RS20215	COG0351	phosphomethylpyrimidine kinase
FYB56_RS20220	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
FYB56_RS20230	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
FYB56_RS20240	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
FYB56_RS20255	COG2226	methyltransferase
FYB56_RS20260	COG0745	RESPONSE REGULATOR receiver
FYB56_RS20265	COG5002	protein histidine kinase activity
FYB56_RS20275	COG5002	protein histidine kinase activity
FYB56_RS20285	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB56_RS20290	COG0583	DNA-binding transcription factor activity
FYB56_RS20300	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FYB56_RS20305	COG1984	allophanate hydrolase subunit 2
FYB56_RS20320	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS20330	COG1024	Enoyl-CoA hydratase
FYB56_RS20345	COG1802	Transcriptional regulator
FYB56_RS20355	COG1238	metal cluster binding
FYB56_RS20360	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FYB56_RS20365	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB56_RS20385	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FYB56_RS20390	COG4988	ABC transporter
FYB56_RS20400	COG1294	oxidase, subunit
FYB56_RS20425	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
FYB56_RS20440	COG1137	ATPase activity
FYB56_RS20445	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FYB56_RS20460	COG1529	Aldehyde oxidase and xanthine dehydrogenase
FYB56_RS20460	COG2010	Cytochrome c
FYB56_RS20470	COG1660	Displays ATPase and GTPase activities
FYB56_RS20480	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FYB56_RS20495	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
FYB56_RS20500	COG2823	Periplasmic or secreted lipoprotein
FYB56_RS20530	COG0471	metal ion transport
FYB56_RS20535	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYB56_RS20540	COG0772	Belongs to the SEDS family
FYB56_RS20545	COG0768	penicillin binding
FYB56_RS20555	COG1792	Involved in formation and maintenance of cell shape
FYB56_RS20560	COG1077	Cell shape determining protein MreB Mrl
FYB56_RS20585	COG0708	Exodeoxyribonuclease III
FYB56_RS20595	COG2860	membrane
FYB56_RS20605	COG0583	DNA-binding transcription factor activity
FYB56_RS20610	COG0473	3-isopropylmalate dehydrogenase activity
FYB56_RS20635	COG0583	DNA-binding transcription factor activity
FYB56_RS20640	COG2515	1-aminocyclopropane-1-carboxylate deaminase
FYB56_RS20645	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FYB56_RS20650	COG0765	amino acid transport
FYB56_RS20655	COG0765	amino acid transport
FYB56_RS20660	COG1126	abc transporter atp-binding protein
FYB56_RS20665	COG1794	racemase activity, acting on amino acids and derivatives
FYB56_RS20670	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB56_RS20675	COG2223	nitrite transmembrane transporter activity
FYB56_RS20680	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FYB56_RS20680	COG2813	Specifically methylates the guanine in position
FYB56_RS20690	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FYB56_RS20735	COG0583	DNA-binding transcription factor activity
FYB56_RS20740	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
FYB56_RS20745	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FYB56_RS20780	COG0154	amidase activity
FYB56_RS20790	COG1414	Transcriptional regulator
FYB56_RS20800	COG1250	3-hydroxyacyl-CoA dehydrogenase
FYB56_RS20800	COG1024	Enoyl-CoA hydratase
FYB56_RS20810	COG2132	Multicopper oxidase
FYB56_RS20855	COG1024	Enoyl-CoA hydratase
FYB56_RS20860	COG1024	Enoyl-CoA hydratase
FYB56_RS20865	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FYB56_RS20875	COG0747	negative chemotaxis
FYB56_RS20885	COG0601	transmembrane transport
FYB56_RS20890	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB56_RS20895	COG0444	Belongs to the ABC transporter superfamily
FYB56_RS20900	COG4608	Belongs to the ABC transporter superfamily
FYB56_RS20910	COG2195	Cleaves the N-terminal amino acid of tripeptides
FYB56_RS20915	COG0210	DNA helicase
FYB56_RS20920	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FYB56_RS20935	COG0355	proton-transporting ATP synthase activity, rotational mechanism
FYB56_RS20955	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FYB56_RS20970	COG0356	it plays a direct role in the translocation of protons across the membrane
FYB56_RS20985	COG1024	Enoyl-CoA hydratase
FYB56_RS21010	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FYB56_RS21020	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FYB56_RS21025	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
FYB56_RS21030	COG2967	ApaG domain
FYB56_RS21035	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FYB56_RS21040	COG0546	phosphoglycolate phosphatase activity
FYB56_RS21050	COG0512	Glutamine amidotransferase of anthranilate synthase
FYB56_RS21070	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS21090	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FYB56_RS21100	COG1607	acyl-coa hydrolase
FYB56_RS21155	COG1802	Transcriptional regulator
FYB56_RS21185	COG1595	DNA-templated transcription, initiation
FYB56_RS21200	COG3720	iron ion transport
FYB56_RS21205	COG4558	Periplasmic binding protein
FYB56_RS21210	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FYB56_RS21220	COG1683	Conserved Protein
FYB56_RS21250	COG3064	Membrane
FYB56_RS21255	COG0583	DNA-binding transcription factor activity
FYB56_RS21265	COG1234	tRNA 3'-trailer cleavage
FYB56_RS21275	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FYB56_RS21280	COG1802	Transcriptional regulator
FYB56_RS21290	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB56_RS21310	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS21330	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS21335	COG0583	DNA-binding transcription factor activity
FYB56_RS21345	COG1522	sequence-specific DNA binding
FYB56_RS21350	COG0183	Belongs to the thiolase family
FYB56_RS21410	COG2814	Major facilitator Superfamily
FYB56_RS21435	COG1999	signal sequence binding
FYB56_RS21475	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FYB56_RS21495	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FYB56_RS21505	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FYB56_RS21515	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
FYB56_RS21520	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
FYB56_RS21530	COG0067	glutamate synthase
FYB56_RS21530	COG0070	glutamate synthase
FYB56_RS21530	COG0069	glutamate synthase activity
FYB56_RS21540	COG3047	cAMP biosynthetic process
FYB56_RS21550	COG1127	ABC transporter
FYB56_RS21555	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FYB56_RS21560	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FYB56_RS21565	COG2853	Lipoprotein
FYB56_RS21575	COG1131	(ABC) transporter
FYB56_RS21580	COG0842	Transport permease protein
FYB56_RS21600	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FYB56_RS21610	COG0131	Imidazoleglycerol-phosphate dehydratase
FYB56_RS21620	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
FYB56_RS21635	COG0140	phosphoribosyl-ATP diphosphatase activity
FYB56_RS21640	COG0537	adenosine 5'-monophosphoramidase activity
FYB56_RS21645	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FYB56_RS21670	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FYB56_RS21680	COG0723	plastoquinol--plastocyanin reductase activity
FYB56_RS21685	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FYB56_RS21690	COG2857	Cytochrome c1
FYB56_RS21695	COG0625	glutathione transferase activity
FYB56_RS21700	COG2969	positive regulation of protein catabolic process
FYB56_RS21730	COG0583	DNA-binding transcription factor activity
FYB56_RS21735	COG0492	ferredoxin-NADP+ reductase activity
FYB56_RS21755	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS21765	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FYB56_RS21785	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS21820	COG3702	type iv secretory pathway
FYB56_RS21840	COG3736	Type IV secretory pathway, component VirB8
FYB56_RS21855	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
FYB56_RS21865	COG0697	spore germination
FYB56_RS21885	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
FYB56_RS21890	COG0747	negative chemotaxis
FYB56_RS21900	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FYB56_RS21910	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
FYB56_RS21920	COG0513	Belongs to the DEAD box helicase family
FYB56_RS21925	COG1280	lysine exporter protein (LysE YggA)
FYB56_RS21950	COG0583	DNA-binding transcription factor activity
FYB56_RS21960	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FYB56_RS21970	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FYB56_RS21975	COG0154	amidase activity
FYB56_RS21980	COG1609	Transcriptional regulator
FYB56_RS22000	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FYB56_RS22005	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FYB56_RS22010	COG3842	ATPase activity
FYB56_RS22015	COG1653	transport
FYB56_RS22020	COG1175	transmembrane transport
FYB56_RS22025	COG0395	ABC-type sugar transport system, permease component
FYB56_RS22060	COG1280	lysine exporter protein (LysE YggA)
FYB56_RS22075	COG1960	acyl-CoA dehydrogenase activity
FYB56_RS22085	COG0183	Belongs to the thiolase family
FYB56_RS22090	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FYB56_RS22110	COG3181	Tripartite tricarboxylate transporter family receptor
FYB56_RS22120	COG2358	TRAP transporter, solute receptor (TAXI family
FYB56_RS22135	COG2922	Belongs to the Smg family
FYB56_RS22160	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB56_RS22165	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS22170	COG1028	Short-chain dehydrogenase reductase Sdr
FYB56_RS22175	COG1012	belongs to the aldehyde dehydrogenase family
FYB56_RS22185	COG0028	Belongs to the TPP enzyme family
FYB56_RS22190	COG1522	sequence-specific DNA binding
FYB56_RS22195	COG3781	membrane
FYB56_RS22225	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FYB56_RS22250	COG1304	FMN binding
FYB56_RS22270	COG1414	Transcriptional regulator
FYB56_RS22285	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
FYB56_RS22290	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FYB56_RS22295	COG0594	ribonuclease P activity
FYB56_RS22300	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
FYB56_RS22310	COG0753	catalase activity
FYB56_RS22315	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FYB56_RS22320	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FYB56_RS22330	COG2175	clavaminate synthase activity
FYB56_RS22335	COG1473	amidohydrolase
FYB56_RS22340	COG4608	Belongs to the ABC transporter superfamily
FYB56_RS22345	COG0444	Belongs to the ABC transporter superfamily
FYB56_RS22355	COG0601	transmembrane transport
FYB56_RS22360	COG0747	negative chemotaxis
FYB56_RS22380	COG3850	Histidine kinase
FYB56_RS22380	COG5002	protein histidine kinase activity
FYB56_RS22400	COG0436	Aminotransferase
FYB56_RS22405	COG1278	Cold shock