locus-tag	class	description
J3Q24_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J3Q24_RS00020	COG1414	Transcriptional regulator
J3Q24_RS00025	COG0154	amidase activity
J3Q24_RS00040	COG1304	FMN binding
J3Q24_RS00090	COG0183	Belongs to the thiolase family
J3Q24_RS00095	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J3Q24_RS00110	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J3Q24_RS00115	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS00125	COG2358	TRAP transporter, solute receptor (TAXI family
J3Q24_RS00135	COG1629	transport
J3Q24_RS00140	COG2922	Belongs to the Smg family
J3Q24_RS00165	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
J3Q24_RS00170	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3Q24_RS00175	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS00180	COG1012	belongs to the aldehyde dehydrogenase family
J3Q24_RS00190	COG0028	Belongs to the TPP enzyme family
J3Q24_RS00195	COG1522	sequence-specific DNA binding
J3Q24_RS00200	COG3781	membrane
J3Q24_RS00210	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J3Q24_RS00230	COG4206	TonB-dependent receptor
J3Q24_RS00235	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J3Q24_RS00240	COG2022	thiamine diphosphate biosynthetic process
J3Q24_RS00245	COG0351	phosphomethylpyrimidine kinase
J3Q24_RS00250	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
J3Q24_RS00265	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
J3Q24_RS00275	COG0628	permease
J3Q24_RS00285	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J3Q24_RS00300	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
J3Q24_RS00305	COG0049	tRNA binding
J3Q24_RS00310	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J3Q24_RS00315	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J3Q24_RS00320	COG0051	transcription antitermination factor activity, RNA binding
J3Q24_RS00325	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
J3Q24_RS00330	COG0088	Forms part of the polypeptide exit tunnel
J3Q24_RS00335	COG0089	rRNA binding
J3Q24_RS00340	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
J3Q24_RS00345	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
J3Q24_RS00350	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
J3Q24_RS00355	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
J3Q24_RS00360	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
J3Q24_RS00365	COG0255	Belongs to the universal ribosomal protein uL29 family
J3Q24_RS00370	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
J3Q24_RS00390	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
J3Q24_RS00395	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
J3Q24_RS00400	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
J3Q24_RS00405	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
J3Q24_RS00410	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J3Q24_RS00415	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
J3Q24_RS00420	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
J3Q24_RS00425	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
J3Q24_RS00430	COG1841	ribosomal large subunit assembly
J3Q24_RS00435	COG0200	Binds to the 23S rRNA
J3Q24_RS00440	COG0201	protein transport
J3Q24_RS00445	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
J3Q24_RS00450	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J3Q24_RS00455	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
J3Q24_RS00460	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
J3Q24_RS00465	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
J3Q24_RS00470	COG0202	RNA polymerase activity
J3Q24_RS00475	COG0203	ribosomal protein L17
J3Q24_RS00480	COG0537	adenosine 5'-monophosphoramidase activity
J3Q24_RS00485	COG1324	tolerance protein
J3Q24_RS00490	COG4232	protein-disulfide reductase activity
J3Q24_RS00505	COG0218	Necessary for normal cell division and for the maintenance of normal septation
J3Q24_RS00515	COG1333	cytochrome c biogenesis protein
J3Q24_RS00520	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J3Q24_RS00530	COG1965	Belongs to the frataxin family
J3Q24_RS00540	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
J3Q24_RS00545	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
J3Q24_RS00550	COG0232	Belongs to the dGTPase family. Type 2 subfamily
J3Q24_RS00565	COG2814	Major facilitator Superfamily
J3Q24_RS00570	COG0629	single-stranded DNA binding
J3Q24_RS00610	COG0402	S-adenosylhomocysteine deaminase activity
J3Q24_RS00620	COG0438	transferase activity, transferring glycosyl groups
J3Q24_RS00640	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3Q24_RS00660	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
J3Q24_RS00685	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J3Q24_RS00690	COG1956	GAF domain-containing protein
J3Q24_RS00695	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J3Q24_RS00705	COG1652	LysM domain
J3Q24_RS00720	COG0220	tRNA (guanine-N7-)-methyltransferase activity
J3Q24_RS00735	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J3Q24_RS00765	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS00780	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3Q24_RS00795	COG1024	Enoyl-CoA hydratase
J3Q24_RS00810	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS00815	COG1309	transcriptional regulator
J3Q24_RS00820	COG2816	NAD+ diphosphatase activity
J3Q24_RS00825	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J3Q24_RS00910	COG2814	Major facilitator Superfamily
J3Q24_RS00915	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
J3Q24_RS00935	COG1999	signal sequence binding
J3Q24_RS00940	COG0109	protoheme IX farnesyltransferase activity
J3Q24_RS00975	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J3Q24_RS00995	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
J3Q24_RS01000	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J3Q24_RS01010	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
J3Q24_RS01015	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
J3Q24_RS01025	COG0067	glutamate synthase
J3Q24_RS01025	COG0069	glutamate synthase activity
J3Q24_RS01025	COG0070	glutamate synthase
J3Q24_RS01035	COG3047	cAMP biosynthetic process
J3Q24_RS01045	COG1127	ABC transporter
J3Q24_RS01050	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J3Q24_RS01055	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J3Q24_RS01060	COG2853	Lipoprotein
J3Q24_RS01075	COG0842	Transport permease protein
J3Q24_RS01085	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J3Q24_RS01090	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
J3Q24_RS01095	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J3Q24_RS01100	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J3Q24_RS01105	COG0131	Imidazoleglycerol-phosphate dehydratase
J3Q24_RS01110	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J3Q24_RS01115	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
J3Q24_RS01120	COG0107	imidazoleglycerol-phosphate synthase activity
J3Q24_RS01125	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J3Q24_RS01130	COG0140	phosphoribosyl-ATP diphosphatase activity
J3Q24_RS01135	COG0537	adenosine 5'-monophosphoramidase activity
J3Q24_RS01140	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J3Q24_RS01145	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J3Q24_RS01170	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS01205	COG3702	type iv secretory pathway
J3Q24_RS01210	COG3451	type IV secretory pathway VirB4
J3Q24_RS01225	COG3736	Type IV secretory pathway, component VirB8
J3Q24_RS01230	COG3504	Conjugal transfer protein
J3Q24_RS01235	COG2948	multi-organism process
J3Q24_RS01240	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
J3Q24_RS01250	COG0697	spore germination
J3Q24_RS01270	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
J3Q24_RS01275	COG0747	negative chemotaxis
J3Q24_RS01280	COG0601	transmembrane transport
J3Q24_RS01285	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J3Q24_RS01300	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
J3Q24_RS01310	COG0494	nUDIX hydrolase
J3Q24_RS01355	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
J3Q24_RS01360	COG0237	dephospho-CoA kinase activity
J3Q24_RS01365	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
J3Q24_RS01380	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
J3Q24_RS01385	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
J3Q24_RS01395	COG0477	Major facilitator Superfamily
J3Q24_RS01400	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J3Q24_RS01415	COG1126	abc transporter atp-binding protein
J3Q24_RS01420	COG0765	amino acid transport
J3Q24_RS01425	COG4597	amino acid ABC transporter
J3Q24_RS01430	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3Q24_RS01435	COG2884	Cell division ATP-binding protein ftsE
J3Q24_RS01440	COG2177	Part of the ABC transporter FtsEX involved in
J3Q24_RS01445	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
J3Q24_RS01455	COG1194	a g-specific adenine glycosylase
J3Q24_RS01465	COG2226	methyltransferase
J3Q24_RS01480	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS01485	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS01500	COG1024	Enoyl-CoA hydratase
J3Q24_RS01520	COG1024	Enoyl-CoA hydratase
J3Q24_RS01525	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS01540	COG0753	catalase activity
J3Q24_RS01545	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3Q24_RS01550	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
J3Q24_RS01560	COG2175	clavaminate synthase activity
J3Q24_RS01565	COG1473	amidohydrolase
J3Q24_RS01570	COG4608	Belongs to the ABC transporter superfamily
J3Q24_RS01575	COG0444	Belongs to the ABC transporter superfamily
J3Q24_RS01590	COG0747	negative chemotaxis
J3Q24_RS01595	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
J3Q24_RS01630	COG0436	Aminotransferase
J3Q24_RS01635	COG1278	Cold shock
J3Q24_RS01640	COG0445	tRNA wobble uridine modification
J3Q24_RS01645	COG0357	Ribosomal RNA small subunit methyltransferase G
J3Q24_RS01650	COG1192	Involved in chromosome partitioning
J3Q24_RS01660	COG1475	DNA binding
J3Q24_RS01665	COG0252	asparaginase activity
J3Q24_RS01690	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J3Q24_RS01700	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J3Q24_RS01710	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
J3Q24_RS01715	COG0081	regulation of translation
J3Q24_RS01720	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
J3Q24_RS01725	COG0222	ribosome binding
J3Q24_RS01730	COG0085	RNA polymerase activity
J3Q24_RS01735	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J3Q24_RS01775	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS01800	COG1024	Enoyl-CoA hydratase
J3Q24_RS01820	COG0752	glycyl-tRNA synthetase alpha subunit
J3Q24_RS01825	COG0751	glycine-tRNA ligase activity
J3Q24_RS01830	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
J3Q24_RS01835	COG0204	Acyl-transferase
J3Q24_RS01850	COG0242	peptide deformylase activity
J3Q24_RS01890	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J3Q24_RS01895	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J3Q24_RS01895	COG2813	Specifically methylates the guanine in position
J3Q24_RS01905	COG2223	nitrite transmembrane transporter activity
J3Q24_RS01915	COG1794	racemase activity, acting on amino acids and derivatives
J3Q24_RS01920	COG1126	abc transporter atp-binding protein
J3Q24_RS01925	COG0765	amino acid transport
J3Q24_RS01930	COG0765	amino acid transport
J3Q24_RS01935	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3Q24_RS02000	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J3Q24_RS02030	COG0326	Molecular chaperone. Has ATPase activity
J3Q24_RS02035	COG0625	glutathione transferase activity
J3Q24_RS02050	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J3Q24_RS02055	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J3Q24_RS02085	COG0438	transferase activity, transferring glycosyl groups
J3Q24_RS02090	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J3Q24_RS02095	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J3Q24_RS02125	COG0859	PFAM glycosyl transferase family 9
J3Q24_RS02140	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
J3Q24_RS02150	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J3Q24_RS02155	COG1127	ABC transporter
J3Q24_RS02175	COG1686	Belongs to the peptidase S11 family
J3Q24_RS02185	COG2921	Belongs to the UPF0250 family
J3Q24_RS02190	COG0321	lipoyl(octanoyl) transferase activity
J3Q24_RS02195	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J3Q24_RS02230	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J3Q24_RS02240	COG0018	arginyl-trna synthetase
J3Q24_RS02260	COG0395	ABC-type sugar transport system, permease component
J3Q24_RS02265	COG1175	transmembrane transport
J3Q24_RS02270	COG1653	transport
J3Q24_RS02275	COG3842	ATPase activity
J3Q24_RS02280	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
J3Q24_RS02290	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
J3Q24_RS02310	COG1609	Transcriptional regulator
J3Q24_RS02320	COG0154	amidase activity
J3Q24_RS02325	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J3Q24_RS02335	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
J3Q24_RS02345	COG0583	DNA-binding transcription factor activity
J3Q24_RS02365	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
J3Q24_RS02380	COG1802	Transcriptional regulator
J3Q24_RS02395	COG1024	Enoyl-CoA hydratase
J3Q24_RS02405	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS02420	COG1984	allophanate hydrolase subunit 2
J3Q24_RS02425	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
J3Q24_RS02435	COG0583	DNA-binding transcription factor activity
J3Q24_RS02440	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J3Q24_RS02450	COG5002	protein histidine kinase activity
J3Q24_RS02460	COG5002	protein histidine kinase activity
J3Q24_RS02465	COG0745	RESPONSE REGULATOR receiver
J3Q24_RS02470	COG2226	methyltransferase
J3Q24_RS02485	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J3Q24_RS02505	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
J3Q24_RS02520	COG1280	lysine exporter protein (LysE YggA)
J3Q24_RS02525	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
J3Q24_RS02560	COG1054	Belongs to the UPF0176 family
J3Q24_RS02565	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J3Q24_RS02565	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J3Q24_RS02575	COG0489	protein tyrosine kinase activity
J3Q24_RS02590	COG0717	Belongs to the dCTP deaminase family
J3Q24_RS02620	COG2081	HI0933 family
J3Q24_RS02630	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J3Q24_RS02640	COG0404	The glycine cleavage system catalyzes the degradation of glycine
J3Q24_RS02645	COG0509	glycine decarboxylation via glycine cleavage system
J3Q24_RS02650	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J3Q24_RS02650	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J3Q24_RS02690	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J3Q24_RS02705	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
J3Q24_RS02715	COG1414	Transcriptional regulator
J3Q24_RS02720	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS02725	COG2031	fatty acid transporter
J3Q24_RS02730	COG1250	3-hydroxyacyl-CoA dehydrogenase
J3Q24_RS02740	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
J3Q24_RS02745	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
J3Q24_RS02755	COG4257	antibiotic catabolic process
J3Q24_RS02775	COG1012	belongs to the aldehyde dehydrogenase family
J3Q24_RS02780	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
J3Q24_RS02785	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J3Q24_RS02810	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS02820	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J3Q24_RS02830	COG2188	Transcriptional regulator
J3Q24_RS02835	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
J3Q24_RS02860	COG0617	tRNA 3'-terminal CCA addition
J3Q24_RS02875	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J3Q24_RS02880	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
J3Q24_RS02885	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
J3Q24_RS02890	COG0586	Pfam SNARE associated Golgi protein
J3Q24_RS02895	COG0860	N-Acetylmuramoyl-L-alanine amidase
J3Q24_RS02900	COG0802	atpase or kinase
J3Q24_RS02905	COG0114	fumarate hydratase activity
J3Q24_RS02915	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS02925	COG0405	Gamma-glutamyltransferase
J3Q24_RS02930	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS02965	COG1294	oxidase, subunit
J3Q24_RS02975	COG4988	ABC transporter
J3Q24_RS02980	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
J3Q24_RS02985	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J3Q24_RS03025	COG2969	positive regulation of protein catabolic process
J3Q24_RS03030	COG0625	glutathione transferase activity
J3Q24_RS03035	COG2857	Cytochrome c1
J3Q24_RS03040	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
J3Q24_RS03045	COG0723	plastoquinol--plastocyanin reductase activity
J3Q24_RS03050	COG1970	mechanosensitive ion channel activity
J3Q24_RS03055	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J3Q24_RS03070	COG2808	Putative FMN-binding domain
J3Q24_RS03075	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J3Q24_RS03080	COG0747	negative chemotaxis
J3Q24_RS03085	COG0657	acetylesterase activity
J3Q24_RS03095	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J3Q24_RS03100	COG2207	Transcriptional regulator
J3Q24_RS03105	COG0129	dihydroxy-acid dehydratase activity
J3Q24_RS03110	COG2814	Major facilitator Superfamily
J3Q24_RS03115	COG0583	DNA-binding transcription factor activity
J3Q24_RS03125	COG4502	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
J3Q24_RS03195	COG1024	Enoyl-CoA hydratase
J3Q24_RS03200	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS03225	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
J3Q24_RS03230	COG0352	thiamine-phosphate diphosphorylase activity
J3Q24_RS03245	COG1678	Uncharacterized ACR, COG1678
J3Q24_RS03250	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J3Q24_RS03255	COG0540	Belongs to the ATCase OTCase family
J3Q24_RS03270	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J3Q24_RS03280	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J3Q24_RS03315	COG1234	tRNA 3'-trailer cleavage
J3Q24_RS03335	COG3064	Membrane
J3Q24_RS03365	COG1683	Conserved Protein
J3Q24_RS03370	COG1120	ATPase activity
J3Q24_RS03375	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J3Q24_RS03380	COG4558	Periplasmic binding protein
J3Q24_RS03385	COG3720	iron ion transport
J3Q24_RS03395	COG3712	iron ion homeostasis
J3Q24_RS03400	COG1595	DNA-templated transcription, initiation
J3Q24_RS03435	COG1802	Transcriptional regulator
J3Q24_RS03445	COG3069	C4-dicarboxylate transmembrane transporter activity
J3Q24_RS03455	COG1012	belongs to the aldehyde dehydrogenase family
J3Q24_RS03490	COG2860	membrane
J3Q24_RS03495	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J3Q24_RS03500	COG0708	Exodeoxyribonuclease III
J3Q24_RS03505	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
J3Q24_RS03510	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J3Q24_RS03515	COG0154	amidase activity
J3Q24_RS03520	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J3Q24_RS03525	COG1077	Cell shape determining protein MreB Mrl
J3Q24_RS03530	COG1792	Involved in formation and maintenance of cell shape
J3Q24_RS03540	COG0768	penicillin binding
J3Q24_RS03545	COG0772	Belongs to the SEDS family
J3Q24_RS03550	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
J3Q24_RS03555	COG0471	metal ion transport
J3Q24_RS03560	COG1309	transcriptional regulator
J3Q24_RS03570	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J3Q24_RS03585	COG2823	Periplasmic or secreted lipoprotein
J3Q24_RS03590	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
J3Q24_RS03605	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J3Q24_RS03625	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS03635	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS03655	COG0492	ferredoxin-NADP+ reductase activity
J3Q24_RS03665	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS03670	COG1024	Enoyl-CoA hydratase
J3Q24_RS03670	COG1250	3-hydroxyacyl-CoA dehydrogenase
J3Q24_RS03675	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS03680	COG0028	Belongs to the TPP enzyme family
J3Q24_RS03705	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS03715	COG0697	spore germination
J3Q24_RS03745	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
J3Q24_RS03750	COG0463	Glycosyl transferase, family 2
J3Q24_RS03765	COG0786	glutamate:sodium symporter activity
J3Q24_RS03775	COG2031	fatty acid transporter
J3Q24_RS03790	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J3Q24_RS03820	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS03830	COG0277	FAD linked oxidase domain protein
J3Q24_RS03835	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS03840	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS03850	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J3Q24_RS03865	COG2072	flavoprotein involved in K transport
J3Q24_RS03870	COG0604	alcohol dehydrogenase
J3Q24_RS03885	COG1024	Enoyl-CoA hydratase
J3Q24_RS03905	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J3Q24_RS03910	COG1522	sequence-specific DNA binding
J3Q24_RS03915	COG0183	Belongs to the thiolase family
J3Q24_RS03925	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS03970	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
J3Q24_RS03975	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J3Q24_RS03980	COG2890	protein-(glutamine-N5) methyltransferase activity
J3Q24_RS03985	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
J3Q24_RS03995	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS04030	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J3Q24_RS04035	COG1660	Displays ATPase and GTPase activities
J3Q24_RS04045	COG1529	Aldehyde oxidase and xanthine dehydrogenase
J3Q24_RS04045	COG2010	Cytochrome c
J3Q24_RS04050	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
J3Q24_RS04065	COG1137	ATPase activity
J3Q24_RS04080	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
J3Q24_RS04090	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
J3Q24_RS04125	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
J3Q24_RS04130	COG3568	Endonuclease Exonuclease Phosphatase
J3Q24_RS04135	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J3Q24_RS04165	COG0154	amidase activity
J3Q24_RS04175	COG1414	Transcriptional regulator
J3Q24_RS04185	COG1024	Enoyl-CoA hydratase
J3Q24_RS04185	COG1250	3-hydroxyacyl-CoA dehydrogenase
J3Q24_RS04195	COG2132	Multicopper oxidase
J3Q24_RS04250	COG1024	Enoyl-CoA hydratase
J3Q24_RS04255	COG1024	Enoyl-CoA hydratase
J3Q24_RS04260	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
J3Q24_RS04280	COG0601	transmembrane transport
J3Q24_RS04285	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J3Q24_RS04290	COG4172	Belongs to the ABC transporter superfamily
J3Q24_RS04300	COG2195	Cleaves the N-terminal amino acid of tripeptides
J3Q24_RS04310	COG0210	DNA helicase
J3Q24_RS04315	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J3Q24_RS04320	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
J3Q24_RS04330	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J3Q24_RS04335	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J3Q24_RS04340	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J3Q24_RS04345	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
J3Q24_RS04350	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J3Q24_RS04355	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
J3Q24_RS04365	COG0356	it plays a direct role in the translocation of protons across the membrane
J3Q24_RS04390	COG1024	Enoyl-CoA hydratase
J3Q24_RS04395	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J3Q24_RS04400	COG3634	alkyl hydroperoxide reductase activity
J3Q24_RS04410	COG0037	tRNA processing
J3Q24_RS04420	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J3Q24_RS04425	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J3Q24_RS04430	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J3Q24_RS04435	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
J3Q24_RS04440	COG2967	ApaG domain
J3Q24_RS04445	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J3Q24_RS04450	COG0546	phosphoglycolate phosphatase activity
J3Q24_RS04460	COG0512	Glutamine amidotransferase of anthranilate synthase
J3Q24_RS04465	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
J3Q24_RS04470	COG0134	indole-3-glycerol-phosphate synthase activity
J3Q24_RS04500	COG0583	DNA-binding transcription factor activity
J3Q24_RS04515	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
J3Q24_RS04520	COG0259	pyridoxamine-phosphate oxidase activity
J3Q24_RS04530	COG2814	Major facilitator Superfamily
J3Q24_RS04535	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
J3Q24_RS04540	COG2188	Transcriptional regulator
J3Q24_RS04545	COG0318	PFAM AMP-dependent synthetase and ligase
J3Q24_RS04565	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J3Q24_RS04575	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J3Q24_RS04585	COG1215	transferase activity, transferring glycosyl groups
J3Q24_RS04595	COG0601	transmembrane transport
J3Q24_RS04630	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
J3Q24_RS04635	COG2894	cell division
J3Q24_RS04640	COG0850	regulation of cytokinetic process
J3Q24_RS04645	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J3Q24_RS04650	COG1271	oxidase subunit
J3Q24_RS04685	COG2979	Protein of unknown function (DUF533)
J3Q24_RS04705	COG1388	LysM domain
J3Q24_RS04705	COG0741	lytic transglycosylase activity
J3Q24_RS04710	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J3Q24_RS04715	COG2226	methyltransferase
J3Q24_RS04720	COG0328	RNA-DNA hybrid ribonuclease activity
J3Q24_RS04765	COG2030	dehydratase
J3Q24_RS04815	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS04830	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS04850	COG2718	Belongs to the UPF0229 family
J3Q24_RS04855	COG2719	SpoVR family
J3Q24_RS04880	COG2188	Transcriptional regulator
J3Q24_RS04910	COG0829	nickel cation binding
J3Q24_RS04915	COG0831	urea catabolic process
J3Q24_RS04925	COG0832	Belongs to the urease beta subunit family
J3Q24_RS04930	COG0804	urea catabolic process
J3Q24_RS04940	COG0830	nickel cation binding
J3Q24_RS04945	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
J3Q24_RS04965	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J3Q24_RS04970	COG0601	transmembrane transport
J3Q24_RS04975	COG0747	negative chemotaxis
J3Q24_RS04985	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J3Q24_RS04990	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J3Q24_RS05000	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
J3Q24_RS05010	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
J3Q24_RS05015	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J3Q24_RS05020	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
J3Q24_RS05035	COG0438	transferase activity, transferring glycosyl groups
J3Q24_RS05050	COG0438	transferase activity, transferring glycosyl groups
J3Q24_RS05055	COG0438	transferase activity, transferring glycosyl groups
J3Q24_RS05060	COG0166	Belongs to the GPI family
J3Q24_RS05075	COG0277	FAD linked oxidase domain protein
J3Q24_RS05080	COG0745	RESPONSE REGULATOR receiver
J3Q24_RS05085	COG0642	Histidine kinase
J3Q24_RS05090	COG1368	sulfuric ester hydrolase activity
J3Q24_RS05100	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
J3Q24_RS05125	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J3Q24_RS05135	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
J3Q24_RS05140	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
J3Q24_RS05150	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J3Q24_RS05155	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
J3Q24_RS05160	COG0193	aminoacyl-tRNA hydrolase activity
J3Q24_RS05170	COG0012	GTP binding
J3Q24_RS05175	COG0582	viral genome integration into host DNA
J3Q24_RS05195	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J3Q24_RS05245	COG0745	RESPONSE REGULATOR receiver
J3Q24_RS05265	COG1309	transcriptional regulator
J3Q24_RS05295	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3Q24_RS05305	COG0405	Gamma-glutamyltransferase
J3Q24_RS05335	COG4772	TonB-dependent receptor
J3Q24_RS05375	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
J3Q24_RS05380	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J3Q24_RS05390	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
J3Q24_RS05395	COG0513	Belongs to the DEAD box helicase family
J3Q24_RS05405	COG0617	tRNA 3'-terminal CCA addition
J3Q24_RS05420	COG0477	Major facilitator Superfamily
J3Q24_RS05430	COG0583	DNA-binding transcription factor activity
J3Q24_RS05445	COG1950	PFAM Membrane protein of
J3Q24_RS05450	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
J3Q24_RS05465	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J3Q24_RS05475	COG1560	Kdo2-lipid A biosynthetic process
J3Q24_RS05480	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
J3Q24_RS05490	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
J3Q24_RS05500	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
J3Q24_RS05510	COG0803	Belongs to the bacterial solute-binding protein 9 family
J3Q24_RS05530	COG0735	belongs to the Fur family
J3Q24_RS05535	COG0523	cobalamin synthesis protein
J3Q24_RS05545	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
J3Q24_RS05550	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
J3Q24_RS05560	COG2096	Adenosyltransferase
J3Q24_RS05580	COG2084	Dehydrogenase
J3Q24_RS05635	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
J3Q24_RS05640	COG0129	dihydroxy-acid dehydratase activity
J3Q24_RS05645	COG4654	Cytochrome c, class I
J3Q24_RS05650	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J3Q24_RS05700	COG1473	amidohydrolase
J3Q24_RS05705	COG0418	dihydroorotase activity
J3Q24_RS05710	COG0488	(ABC) transporter
J3Q24_RS05720	COG2001	Belongs to the MraZ family
J3Q24_RS05725	COG0275	rRNA processing
J3Q24_RS05730	COG3116	cell division
J3Q24_RS05740	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J3Q24_RS05745	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J3Q24_RS05750	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J3Q24_RS05760	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J3Q24_RS05765	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J3Q24_RS05770	COG1181	Belongs to the D-alanine--D-alanine ligase family
J3Q24_RS05775	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
J3Q24_RS05785	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
J3Q24_RS05790	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
J3Q24_RS05800	COG0739	heme binding
J3Q24_RS05805	COG0653	protein targeting
J3Q24_RS05825	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS05830	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3Q24_RS05835	COG1522	sequence-specific DNA binding
J3Q24_RS05855	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J3Q24_RS05865	COG0557	exoribonuclease II activity
J3Q24_RS05870	COG3150	esterase
J3Q24_RS05875	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J3Q24_RS05880	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J3Q24_RS05885	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
J3Q24_RS05890	COG0511	ligase activity, forming carbon-carbon bonds
J3Q24_RS05895	COG0439	Biotin carboxylase
J3Q24_RS05910	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J3Q24_RS05930	COG1696	Membrane protein involved in D-alanine export
J3Q24_RS05935	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3Q24_RS05970	COG1522	sequence-specific DNA binding
J3Q24_RS05985	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J3Q24_RS05990	COG0045	succinate-CoA ligase (ADP-forming) activity
J3Q24_RS05990	COG1042	CoA-binding domain protein
J3Q24_RS05990	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J3Q24_RS06000	COG1802	Transcriptional regulator
J3Q24_RS06005	COG3069	C4-dicarboxylate transmembrane transporter activity
J3Q24_RS06010	COG0513	Belongs to the DEAD box helicase family
J3Q24_RS06015	COG0346	lactoylglutathione lyase activity
J3Q24_RS06020	COG1335	isochorismatase
J3Q24_RS06025	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3Q24_RS06030	COG1116	anion transmembrane transporter activity
J3Q24_RS06045	COG3028	Belongs to the UPF0307 family
J3Q24_RS06050	COG0312	modulator of DNA gyrase
J3Q24_RS06055	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
J3Q24_RS06060	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
J3Q24_RS06065	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J3Q24_RS06070	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
J3Q24_RS06080	COG0316	Belongs to the HesB IscA family
J3Q24_RS06085	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
J3Q24_RS06105	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J3Q24_RS06115	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J3Q24_RS06120	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
J3Q24_RS06135	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J3Q24_RS06135	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J3Q24_RS06165	COG0583	DNA-binding transcription factor activity
J3Q24_RS06170	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS06205	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
J3Q24_RS06215	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J3Q24_RS06220	COG1845	cytochrome c oxidase, subunit III
J3Q24_RS06225	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
J3Q24_RS06230	COG0640	Transcriptional regulator
J3Q24_RS06250	COG3220	belongs to the UPF0276 family
J3Q24_RS06295	COG1666	GTP binding
J3Q24_RS06330	COG0312	modulator of DNA gyrase
J3Q24_RS06335	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J3Q24_RS06340	COG3064	Membrane
J3Q24_RS06340	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
J3Q24_RS06340	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
J3Q24_RS06340	COG3064	Membrane
J3Q24_RS06340	COG3210	domain, Protein
J3Q24_RS06340	COG3210	domain, Protein
J3Q24_RS06345	COG0277	FAD linked oxidase domain protein
J3Q24_RS06350	COG0277	FAD linked oxidase domain protein
J3Q24_RS06355	COG0277	FAD linked oxidase domain protein
J3Q24_RS06360	COG0247	lactate metabolic process
J3Q24_RS06365	COG2819	hydrolase of the alpha beta superfamily
J3Q24_RS06405	COG0583	DNA-binding transcription factor activity
J3Q24_RS06410	COG0482	sulfurtransferase activity
J3Q24_RS06415	COG0730	response to heat
J3Q24_RS06420	COG0625	glutathione transferase activity
J3Q24_RS06425	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J3Q24_RS06430	COG3909	cytochrome
J3Q24_RS06470	COG0154	amidase activity
J3Q24_RS06475	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS06480	COG1024	Enoyl-CoA hydratase
J3Q24_RS06495	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3Q24_RS06510	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS06515	COG1414	Transcriptional regulator
J3Q24_RS06530	COG0251	oxidation-reduction process
J3Q24_RS06535	COG0559	Belongs to the binding-protein-dependent transport system permease family
J3Q24_RS06570	COG0583	DNA-binding transcription factor activity
J3Q24_RS06580	COG0590	tRNA wobble adenosine to inosine editing
J3Q24_RS06610	COG0154	amidase activity
J3Q24_RS06615	COG0307	riboflavin synthase, alpha
J3Q24_RS06620	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS06625	COG1522	sequence-specific DNA binding
J3Q24_RS06635	COG0318	PFAM AMP-dependent synthetase and ligase
J3Q24_RS06645	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3Q24_RS06665	COG1063	alcohol dehydrogenase
J3Q24_RS06695	COG1418	mRNA catabolic process
J3Q24_RS06700	COG1448	Aminotransferase
J3Q24_RS06705	COG0583	DNA-binding transcription factor activity
J3Q24_RS06715	COG0477	Major facilitator Superfamily
J3Q24_RS06720	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS06735	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J3Q24_RS06740	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
J3Q24_RS06745	COG0583	DNA-binding transcription factor activity
J3Q24_RS06795	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS06800	COG1309	transcriptional regulator
J3Q24_RS06810	COG2982	Protein involved in outer membrane biogenesis
J3Q24_RS06815	COG2818	Glycosylase
J3Q24_RS06835	COG1653	transport
J3Q24_RS06855	COG3842	ATPase activity
J3Q24_RS06860	COG0395	ABC-type sugar transport system, permease component
J3Q24_RS06865	COG1175	transmembrane transport
J3Q24_RS06890	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS06895	COG2186	Transcriptional regulator
J3Q24_RS06920	COG1454	alcohol dehydrogenase
J3Q24_RS06940	COG2011	ABC-type metal ion transport system permease component
J3Q24_RS06945	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J3Q24_RS06950	COG1501	Belongs to the glycosyl hydrolase 31 family
J3Q24_RS06975	COG0318	PFAM AMP-dependent synthetase and ligase
J3Q24_RS06980	COG1473	amidohydrolase
J3Q24_RS06990	COG2855	membrane
J3Q24_RS07000	COG2239	Acts as a magnesium transporter
J3Q24_RS07020	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS07030	COG1722	exodeoxyribonuclease VII activity
J3Q24_RS07035	COG0142	geranyltranstransferase activity
J3Q24_RS07040	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
J3Q24_RS07045	COG1469	GTP cyclohydrolase I activity
J3Q24_RS07050	COG0360	Binds together with S18 to 16S ribosomal RNA
J3Q24_RS07055	COG2965	DNA replication, synthesis of RNA primer
J3Q24_RS07060	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
J3Q24_RS07065	COG0359	binds to the 23S rRNA
J3Q24_RS07075	COG0305	Participates in initiation and elongation during chromosome replication
J3Q24_RS07085	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
J3Q24_RS07090	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
J3Q24_RS07095	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J3Q24_RS07100	COG3737	Protein of unknown function (DUF498/DUF598)
J3Q24_RS07105	COG0436	Aminotransferase
J3Q24_RS07135	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
J3Q24_RS07165	COG0268	Binds directly to 16S ribosomal RNA
J3Q24_RS07175	COG0728	peptidoglycan biosynthetic process
J3Q24_RS07185	COG0563	adenylate kinase activity
J3Q24_RS07190	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
J3Q24_RS07195	COG2835	tetraacyldisaccharide 4'-kinase activity
J3Q24_RS07200	COG1663	tetraacyldisaccharide 4'-kinase activity
J3Q24_RS07205	COG0848	biopolymer transport protein
J3Q24_RS07210	COG0811	peptide transport
J3Q24_RS07220	COG1570	exodeoxyribonuclease VII activity
J3Q24_RS07225	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J3Q24_RS07230	COG0038	chloride channel
J3Q24_RS07235	COG0183	Belongs to the thiolase family
J3Q24_RS07245	COG1278	Cold shock
J3Q24_RS07250	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
J3Q24_RS07260	COG4953	penicillin-binding protein 1C
J3Q24_RS07265	COG0542	response to heat
J3Q24_RS07270	COG2995	paraquat-inducible protein a
J3Q24_RS07275	COG3008	intermembrane lipid transfer
J3Q24_RS07275	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J3Q24_RS07285	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
J3Q24_RS07285	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
J3Q24_RS07285	COG0506	proline dehydrogenase activity
J3Q24_RS07325	COG2271	Major facilitator Superfamily
J3Q24_RS07330	COG1309	transcriptional regulator
J3Q24_RS07335	COG3468	outer membrane autotransporter barrel domain protein
J3Q24_RS07365	COG0477	Major facilitator Superfamily
J3Q24_RS07375	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J3Q24_RS07380	COG1845	cytochrome c oxidase, subunit III
J3Q24_RS07385	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
J3Q24_RS07395	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS07415	COG0789	Transcriptional regulator
J3Q24_RS07440	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
J3Q24_RS07445	COG0697	spore germination
J3Q24_RS07455	COG0678	peroxiredoxin activity
J3Q24_RS07465	COG0412	Dienelactone hydrolase
J3Q24_RS07475	COG0315	cyclic pyranopterin monophosphate synthase activity
J3Q24_RS07490	COG0521	Mo-molybdopterin cofactor biosynthetic process
J3Q24_RS07495	COG0303	'Molybdopterin
J3Q24_RS07500	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J3Q24_RS07520	COG0165	Argininosuccinate lyase
J3Q24_RS07525	COG0668	transmembrane transport
J3Q24_RS07570	COG0747	negative chemotaxis
J3Q24_RS07575	COG0601	transmembrane transport
J3Q24_RS07590	COG1162	GTPase activity
J3Q24_RS07595	COG0501	Belongs to the peptidase M48B family
J3Q24_RS07600	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
J3Q24_RS07610	COG3327	negative regulation of DNA-templated transcription, initiation
J3Q24_RS07615	COG3396	Phenylacetate-CoA oxygenase
J3Q24_RS07620	COG3460	Phenylacetate-CoA oxygenase
J3Q24_RS07625	COG3396	Phenylacetate-CoA oxygenase
J3Q24_RS07630	COG2151	metal-sulfur cluster biosynthetic enzyme
J3Q24_RS07645	COG1012	belongs to the aldehyde dehydrogenase family
J3Q24_RS07650	COG1024	Enoyl-CoA hydratase
J3Q24_RS07655	COG2050	protein possibly involved in aromatic compounds catabolism
J3Q24_RS07665	COG3539	Fimbrial protein
J3Q24_RS07680	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J3Q24_RS07685	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J3Q24_RS07685	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J3Q24_RS07690	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J3Q24_RS07695	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J3Q24_RS07695	COG0047	phosphoribosylformylglycinamidine synthase activity
J3Q24_RS07700	COG3210	domain, Protein
J3Q24_RS07700	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
J3Q24_RS07700	COG3064	Membrane
J3Q24_RS07725	COG0235	Class ii aldolase
J3Q24_RS07730	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
J3Q24_RS07735	COG0720	synthase
J3Q24_RS07740	COG0602	queuosine metabolic process
J3Q24_RS07765	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J3Q24_RS07800	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS07830	COG3842	ATPase activity
J3Q24_RS07840	COG0395	ABC-type sugar transport system, permease component
J3Q24_RS07870	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3Q24_RS07875	COG0420	3'-5' exonuclease activity
J3Q24_RS07915	COG0519	Catalyzes the synthesis of GMP from XMP
J3Q24_RS07915	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J3Q24_RS07925	COG3550	peptidyl-serine autophosphorylation
J3Q24_RS07935	COG0477	Major facilitator Superfamily
J3Q24_RS07950	COG1228	amidohydrolase
J3Q24_RS07960	COG1116	anion transmembrane transporter activity
J3Q24_RS07965	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3Q24_RS08000	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
J3Q24_RS08020	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
J3Q24_RS08050	COG2814	Major facilitator Superfamily
J3Q24_RS08065	COG1280	lysine exporter protein (LysE YggA)
J3Q24_RS08085	COG0747	negative chemotaxis
J3Q24_RS08090	COG0601	transmembrane transport
J3Q24_RS08095	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J3Q24_RS08100	COG4172	Belongs to the ABC transporter superfamily
J3Q24_RS08105	COG1609	Transcriptional regulator
J3Q24_RS08135	COG0586	Pfam SNARE associated Golgi protein
J3Q24_RS08145	COG0500	methyltransferase
J3Q24_RS08160	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J3Q24_RS08170	COG0756	dUTP diphosphatase activity
J3Q24_RS08180	COG0291	Belongs to the bacterial ribosomal protein bL35 family
J3Q24_RS08185	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
J3Q24_RS08190	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
J3Q24_RS08195	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J3Q24_RS08195	COG0072	phenylalanine-tRNA ligase activity
J3Q24_RS08200	COG0776	regulation of translation
J3Q24_RS08265	COG0540	Belongs to the ATCase OTCase family
J3Q24_RS08270	COG2974	May be involved in recombination
J3Q24_RS08280	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS08285	COG0583	DNA-binding transcription factor activity
J3Q24_RS08305	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS08320	COG3842	ATPase activity
J3Q24_RS08325	COG1024	Enoyl-CoA hydratase
J3Q24_RS08325	COG1250	3-hydroxyacyl-CoA dehydrogenase
J3Q24_RS08345	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
J3Q24_RS08350	COG2137	regulation of response to DNA damage stimulus
J3Q24_RS08360	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
J3Q24_RS08370	COG0045	succinate-CoA ligase (ADP-forming) activity
J3Q24_RS08375	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
J3Q24_RS08380	COG0861	Integral membrane protein TerC family
J3Q24_RS08385	COG0861	Integral membrane protein TerC family
J3Q24_RS08390	COG0181	hydroxymethylbilane synthase activity
J3Q24_RS08450	COG4964	Belongs to the GSP D family
J3Q24_RS08475	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J3Q24_RS08485	COG0583	DNA-binding transcription factor activity
J3Q24_RS08495	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3Q24_RS08500	COG4311	Sarcosine oxidase, delta subunit
J3Q24_RS08505	COG0404	The glycine cleavage system catalyzes the degradation of glycine
J3Q24_RS08505	COG0446	pyridine nucleotide-disulphide oxidoreductase
J3Q24_RS08540	COG0812	UDP-N-acetylmuramate dehydrogenase activity
J3Q24_RS08545	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
J3Q24_RS08550	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J3Q24_RS08555	COG0735	belongs to the Fur family
J3Q24_RS08560	COG0497	DNA recombination
J3Q24_RS08565	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J3Q24_RS08570	COG1420	regulation of RNA biosynthetic process
J3Q24_RS08575	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
J3Q24_RS08585	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J3Q24_RS08595	COG0443	Heat shock 70 kDa protein
J3Q24_RS08605	COG0612	Peptidase, M16
J3Q24_RS08625	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J3Q24_RS08675	COG0745	RESPONSE REGULATOR receiver
J3Q24_RS08685	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
J3Q24_RS08690	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
J3Q24_RS08695	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
J3Q24_RS08710	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J3Q24_RS08730	COG1193	negative regulation of DNA recombination
J3Q24_RS08735	COG0492	ferredoxin-NADP+ reductase activity
J3Q24_RS08740	COG1674	ftsk spoiiie
J3Q24_RS08745	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
J3Q24_RS08750	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J3Q24_RS08755	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
J3Q24_RS08780	COG3706	GGDEF domain
J3Q24_RS08800	COG2814	Major facilitator Superfamily
J3Q24_RS08830	COG3486	L-lysine 6-monooxygenase (NADPH) activity
J3Q24_RS08845	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS08855	COG3022	response to hydroperoxide
J3Q24_RS08870	COG3023	N-Acetylmuramoyl-L-alanine amidase
J3Q24_RS08880	COG0424	maF-like protein
J3Q24_RS08885	COG1399	metal-binding, possibly nucleic acid-binding protein
J3Q24_RS08890	COG0333	Belongs to the bacterial ribosomal protein bL32 family
J3Q24_RS08895	COG0416	fatty acid biosynthetic process
J3Q24_RS08900	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J3Q24_RS08915	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3Q24_RS08920	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J3Q24_RS08945	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J3Q24_RS08950	COG0481	GTPase activity
J3Q24_RS08955	COG0681	Belongs to the peptidase S26 family
J3Q24_RS08960	COG0571	ribonuclease III activity
J3Q24_RS08965	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J3Q24_RS08970	COG1381	Involved in DNA repair and RecF pathway recombination
J3Q24_RS08995	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS09000	COG0670	Belongs to the BI1 family
J3Q24_RS09015	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J3Q24_RS09025	COG0583	DNA-binding transcription factor activity
J3Q24_RS09040	COG0583	DNA-binding transcription factor activity
J3Q24_RS09055	COG0791	NLP P60 protein
J3Q24_RS09065	COG3193	protein, possibly involved in utilization of glycolate and propanediol
J3Q24_RS09075	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J3Q24_RS09080	COG0697	spore germination
J3Q24_RS09085	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
J3Q24_RS09100	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J3Q24_RS09130	COG1446	asparaginase
J3Q24_RS09135	COG4172	Belongs to the ABC transporter superfamily
J3Q24_RS09140	COG0747	negative chemotaxis
J3Q24_RS09150	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J3Q24_RS09175	COG0504	CTP synthase activity
J3Q24_RS09180	COG2877	3-deoxy-8-phosphooctulonate synthase activity
J3Q24_RS09190	COG0148	phosphopyruvate hydratase activity
J3Q24_RS09195	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
J3Q24_RS09225	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
J3Q24_RS09235	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J3Q24_RS09260	COG1981	membrane
J3Q24_RS09300	COG0039	L-malate dehydrogenase activity
J3Q24_RS09305	COG2188	Transcriptional regulator
J3Q24_RS09310	COG2009	succinate dehydrogenase
J3Q24_RS09315	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
J3Q24_RS09320	COG1053	succinate dehydrogenase
J3Q24_RS09325	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J3Q24_RS09330	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
J3Q24_RS09335	COG0372	Belongs to the citrate synthase family
J3Q24_RS09350	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J3Q24_RS09350	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J3Q24_RS09360	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J3Q24_RS09365	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
J3Q24_RS09380	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
J3Q24_RS09385	COG3842	ATPase activity
J3Q24_RS09390	COG1176	ABC-type spermidine putrescine transport system, permease component I
J3Q24_RS09395	COG1177	transmembrane transport
J3Q24_RS09420	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS09425	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
J3Q24_RS09430	COG0704	Plays a role in the regulation of phosphate uptake
J3Q24_RS09440	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
J3Q24_RS09445	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J3Q24_RS09445	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
J3Q24_RS09450	COG1643	Atp-dependent helicase
J3Q24_RS09465	COG0438	transferase activity, transferring glycosyl groups
J3Q24_RS09470	COG0726	polysaccharide deacetylase
J3Q24_RS09475	COG0463	Glycosyl transferase, family 2
J3Q24_RS09480	COG0438	transferase activity, transferring glycosyl groups
J3Q24_RS09485	COG2194	sulfuric ester hydrolase activity
J3Q24_RS09510	COG0859	PFAM glycosyl transferase family 9
J3Q24_RS09515	COG1132	(ABC) transporter
J3Q24_RS09530	COG0077	Prephenate dehydratase
J3Q24_RS09535	COG1530	ribonuclease E activity
J3Q24_RS09570	COG3468	outer membrane autotransporter barrel domain protein
J3Q24_RS09575	COG0424	maF-like protein
J3Q24_RS09580	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
J3Q24_RS09585	COG0799	negative regulation of ribosome biogenesis
J3Q24_RS09590	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
J3Q24_RS09595	COG0408	coproporphyrinogen oxidase activity
J3Q24_RS09600	COG0151	Belongs to the GarS family
J3Q24_RS09605	COG0217	transcriptional regulatory protein
J3Q24_RS09610	COG0433	COG0433 Predicted ATPase
J3Q24_RS09615	COG1115	amino acid carrier protein
J3Q24_RS09620	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J3Q24_RS09630	COG1012	belongs to the aldehyde dehydrogenase family
J3Q24_RS09655	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J3Q24_RS09675	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J3Q24_RS09685	COG0747	negative chemotaxis
J3Q24_RS09695	COG0473	3-isopropylmalate dehydrogenase activity
J3Q24_RS09700	COG2814	Major facilitator Superfamily
J3Q24_RS09705	COG1566	PFAM secretion protein HlyD family protein
J3Q24_RS09715	COG1846	Transcriptional regulator
J3Q24_RS09725	COG0697	spore germination
J3Q24_RS09735	COG0501	Belongs to the peptidase M48B family
J3Q24_RS09755	COG0583	DNA-binding transcription factor activity
J3Q24_RS09760	COG3842	ATPase activity
J3Q24_RS09765	COG1178	ABC-type Fe3 transport system permease component
J3Q24_RS09770	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J3Q24_RS09775	COG1840	ABC-type Fe3 transport system, periplasmic component
J3Q24_RS09800	COG2233	PERMEase
J3Q24_RS09805	COG0840	transmembrane signaling receptor activity
J3Q24_RS09810	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J3Q24_RS09845	COG4789	Type iii secretion
J3Q24_RS09910	COG4669	(LipO)protein
J3Q24_RS09945	COG4790	Type iii secretion
J3Q24_RS09950	COG4794	Type iii secretion
J3Q24_RS09955	COG4791	protein targeting
J3Q24_RS09960	COG4792	protein secretion
J3Q24_RS09975	COG1595	DNA-templated transcription, initiation
J3Q24_RS10000	COG2208	phosphoserine phosphatase activity
J3Q24_RS10000	COG2770	Histidine kinase
J3Q24_RS10010	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J3Q24_RS10015	COG2172	sigma factor antagonist activity
J3Q24_RS10020	COG1366	Belongs to the anti-sigma-factor antagonist family
J3Q24_RS10025	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J3Q24_RS10055	COG2358	TRAP transporter, solute receptor (TAXI family
J3Q24_RS10060	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J3Q24_RS10090	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J3Q24_RS10100	COG2252	PERMEase
J3Q24_RS10105	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J3Q24_RS10115	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
J3Q24_RS10120	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
J3Q24_RS10150	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J3Q24_RS10155	COG0789	Transcriptional regulator
J3Q24_RS10165	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J3Q24_RS10165	COG0678	peroxiredoxin activity
J3Q24_RS10175	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
J3Q24_RS10180	COG0584	glycerophosphoryl diester phosphodiesterase
J3Q24_RS10185	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J3Q24_RS10210	COG2823	Periplasmic or secreted lipoprotein
J3Q24_RS10220	COG3237	CsbD-like
J3Q24_RS10225	COG1181	Belongs to the D-alanine--D-alanine ligase family
J3Q24_RS10225	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J3Q24_RS10230	COG0189	ligase activity
J3Q24_RS10230	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J3Q24_RS10250	COG2833	Protein of unknown function (DUF455)
J3Q24_RS10255	COG2951	lytic endotransglycosylase activity
J3Q24_RS10270	COG1522	sequence-specific DNA binding
J3Q24_RS10280	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J3Q24_RS10285	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
J3Q24_RS10290	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J3Q24_RS10295	COG0196	riboflavin kinase activity
J3Q24_RS10300	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J3Q24_RS10320	COG0210	DNA helicase
J3Q24_RS10325	COG4771	TonB-dependent receptor
J3Q24_RS10330	COG0488	(ABC) transporter
J3Q24_RS10335	COG2890	protein-(glutamine-N5) methyltransferase activity
J3Q24_RS10340	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J3Q24_RS10345	COG2171	N-acyltransferase activity
J3Q24_RS10380	COG1278	Cold shock
J3Q24_RS10390	COG1278	Cold shock
J3Q24_RS10400	COG0544	peptidyl-prolyl cis-trans isomerase activity
J3Q24_RS10405	COG0740	serine-type endopeptidase activity
J3Q24_RS10410	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J3Q24_RS10415	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
J3Q24_RS10420	COG0583	DNA-binding transcription factor activity
J3Q24_RS10425	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS10440	COG1024	Enoyl-CoA hydratase
J3Q24_RS10450	COG0183	Belongs to the thiolase family
J3Q24_RS10455	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS10475	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
J3Q24_RS10505	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J3Q24_RS10515	COG0556	nucleotide-excision repair
J3Q24_RS10520	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J3Q24_RS10530	COG1104	cysteine desulfurase activity
J3Q24_RS10535	COG0822	iron-sulfur transferase activity
J3Q24_RS10540	COG0316	Belongs to the HesB IscA family
J3Q24_RS10545	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
J3Q24_RS10550	COG0443	Heat shock 70 kDa protein
J3Q24_RS10555	COG0633	Ferredoxin
J3Q24_RS10575	COG1024	Enoyl-CoA hydratase
J3Q24_RS10590	COG3395	kinase activity
J3Q24_RS10610	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
J3Q24_RS10620	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3Q24_RS10650	COG0747	negative chemotaxis
J3Q24_RS10655	COG0601	transmembrane transport
J3Q24_RS10660	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J3Q24_RS10665	COG4172	Belongs to the ABC transporter superfamily
J3Q24_RS10670	COG0154	amidase activity
J3Q24_RS10715	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J3Q24_RS10720	COG0425	Belongs to the sulfur carrier protein TusA family
J3Q24_RS10730	COG0228	four-way junction DNA binding
J3Q24_RS10735	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J3Q24_RS10740	COG0336	Belongs to the RNA methyltransferase TrmD family
J3Q24_RS10745	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J3Q24_RS10765	COG0642	Histidine kinase
J3Q24_RS10780	COG0525	valine-tRNA ligase activity
J3Q24_RS10785	COG0105	UTP biosynthetic process
J3Q24_RS10790	COG0820	rRNA (adenine-C2-)-methyltransferase activity
J3Q24_RS10800	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
J3Q24_RS10805	COG0124	histidyl-tRNA synthetase
J3Q24_RS10810	COG2976	Protein conserved in bacteria
J3Q24_RS10815	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J3Q24_RS10820	COG1160	GTP binding
J3Q24_RS10825	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J3Q24_RS10830	COG1923	regulation of RNA biosynthetic process
J3Q24_RS10835	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J3Q24_RS10840	COG0330	HflC and HflK could
J3Q24_RS10845	COG0330	HflC and HflK could
J3Q24_RS10850	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
J3Q24_RS10855	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J3Q24_RS10860	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
J3Q24_RS10865	COG0828	Belongs to the bacterial ribosomal protein bS21 family
J3Q24_RS10875	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J3Q24_RS10900	COG0628	permease
J3Q24_RS10905	COG0842	Transport permease protein
J3Q24_RS10910	COG1131	(ABC) transporter
J3Q24_RS10985	COG0156	8-amino-7-oxononanoate synthase activity
J3Q24_RS10995	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
J3Q24_RS10995	COG4106	trans-aconitate 2-methyltransferase activity
J3Q24_RS11000	COG1380	Effector of murein hydrolase LrgA
J3Q24_RS11025	COG3284	Transcriptional regulator
J3Q24_RS11030	COG1012	belongs to the aldehyde dehydrogenase family
J3Q24_RS11045	COG2733	membrane
J3Q24_RS11050	COG0583	DNA-binding transcription factor activity
J3Q24_RS11055	COG0384	phenazine biosynthesis protein PhzF
J3Q24_RS11060	COG5507	3-demethylubiquinone-9 3-methyltransferase
J3Q24_RS11065	COG2169	Transcriptional regulator
J3Q24_RS11095	COG0659	secondary active sulfate transmembrane transporter activity
J3Q24_RS11120	COG1132	(ABC) transporter
J3Q24_RS11165	COG2207	Transcriptional regulator
J3Q24_RS11295	COG2346	COG2346, Truncated hemoglobins
J3Q24_RS11320	COG0583	DNA-binding transcription factor activity
J3Q24_RS11335	COG0183	Belongs to the thiolase family
J3Q24_RS11350	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS11355	COG0633	Ferredoxin
J3Q24_RS11365	COG1024	Enoyl-CoA hydratase
J3Q24_RS11375	COG4638	Rieske (2fe-2S)
J3Q24_RS11385	COG0559	Belongs to the binding-protein-dependent transport system permease family
J3Q24_RS11405	COG2224	Isocitrate lyase
J3Q24_RS11410	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J3Q24_RS11410	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J3Q24_RS11420	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J3Q24_RS11430	COG1472	Belongs to the glycosyl hydrolase 3 family
J3Q24_RS11435	COG0736	holo-[acyl-carrier-protein] synthase activity
J3Q24_RS11440	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
J3Q24_RS11450	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J3Q24_RS11455	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J3Q24_RS11480	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
J3Q24_RS11495	COG2032	superoxide dismutase activity
J3Q24_RS11510	COG1024	Enoyl-CoA hydratase
J3Q24_RS11520	COG1802	Transcriptional regulator
J3Q24_RS11530	COG0183	Belongs to the thiolase family
J3Q24_RS11535	COG1942	4-Oxalocrotonate Tautomerase
J3Q24_RS11545	COG4176	ABC-type proline glycine betaine transport system permease component
J3Q24_RS11565	COG2814	Major facilitator Superfamily
J3Q24_RS11570	COG0227	Belongs to the bacterial ribosomal protein bL28 family
J3Q24_RS11575	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J3Q24_RS11605	COG2814	Major facilitator Superfamily
J3Q24_RS11610	COG0495	leucyl-tRNA aminoacylation
J3Q24_RS11625	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
J3Q24_RS11635	COG0154	amidase activity
J3Q24_RS11640	COG1250	3-hydroxyacyl-CoA dehydrogenase
J3Q24_RS11695	COG0427	acetyl-CoA hydrolase
J3Q24_RS11700	COG0583	DNA-binding transcription factor activity
J3Q24_RS11715	COG0730	response to heat
J3Q24_RS11720	COG0697	spore germination
J3Q24_RS11755	COG2885	chlorophyll binding
J3Q24_RS11780	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
J3Q24_RS11785	COG3384	dioxygenase
J3Q24_RS11800	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J3Q24_RS11805	COG3474	cytochrome
J3Q24_RS11815	COG1595	DNA-templated transcription, initiation
J3Q24_RS11830	COG2204	response regulator
J3Q24_RS11870	COG4964	Belongs to the GSP D family
J3Q24_RS11920	COG1846	Transcriptional regulator
J3Q24_RS11925	COG4172	Belongs to the ABC transporter superfamily
J3Q24_RS11930	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J3Q24_RS11935	COG0601	transmembrane transport
J3Q24_RS11940	COG0747	negative chemotaxis
J3Q24_RS11950	COG0598	Magnesium transport protein CorA
J3Q24_RS11955	COG0210	DNA helicase
J3Q24_RS11970	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J3Q24_RS11975	COG1012	belongs to the aldehyde dehydrogenase family
J3Q24_RS11980	COG0483	inositol monophosphate 1-phosphatase activity
J3Q24_RS11985	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J3Q24_RS11995	COG1045	serine acetyltransferase
J3Q24_RS12000	COG0166	Belongs to the GPI family
J3Q24_RS12025	COG1846	Transcriptional regulator
J3Q24_RS12045	COG0726	polysaccharide deacetylase
J3Q24_RS12045	COG1649	PFAM Uncharacterised BCR, COG1649
J3Q24_RS12050	COG1215	transferase activity, transferring glycosyl groups
J3Q24_RS12060	COG1902	pentaerythritol trinitrate reductase activity
J3Q24_RS12085	COG0251	oxidation-reduction process
J3Q24_RS12095	COG1832	CoA-binding protein
J3Q24_RS12100	COG1414	Transcriptional regulator
J3Q24_RS12105	COG1902	pentaerythritol trinitrate reductase activity
J3Q24_RS12105	COG0446	pyridine nucleotide-disulphide oxidoreductase
J3Q24_RS12115	COG3842	ATPase activity
J3Q24_RS12140	COG0583	DNA-binding transcription factor activity
J3Q24_RS12150	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS12155	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
J3Q24_RS12160	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J3Q24_RS12175	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J3Q24_RS12175	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J3Q24_RS12180	COG1250	3-hydroxyacyl-CoA dehydrogenase
J3Q24_RS12205	COG0527	aspartate kinase activity
J3Q24_RS12210	COG0037	tRNA processing
J3Q24_RS12220	COG0825	malonyl-CoA metabolic process
J3Q24_RS12230	COG0215	cysteine-tRNA ligase activity
J3Q24_RS12245	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J3Q24_RS12250	COG1968	undecaprenyl-diphosphatase activity
J3Q24_RS12255	COG1253	flavin adenine dinucleotide binding
J3Q24_RS12260	COG0483	inositol monophosphate 1-phosphatase activity
J3Q24_RS12280	COG0668	transmembrane transport
J3Q24_RS12330	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J3Q24_RS12345	COG2831	hemolysin activation secretion protein
J3Q24_RS12350	COG3539	Fimbrial protein
J3Q24_RS12355	COG3188	usher protein
J3Q24_RS12360	COG3121	Chaperone
J3Q24_RS12375	COG2197	response regulator
J3Q24_RS12380	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3Q24_RS12380	COG2205	protein histidine kinase activity
J3Q24_RS12390	COG4336	lyase activity
J3Q24_RS12440	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J3Q24_RS12450	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J3Q24_RS12450	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J3Q24_RS12460	COG0028	Belongs to the TPP enzyme family
J3Q24_RS12475	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J3Q24_RS12485	COG1126	abc transporter atp-binding protein
J3Q24_RS12495	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3Q24_RS12510	COG0084	hydrolase, TatD family'
J3Q24_RS12515	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J3Q24_RS12520	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
J3Q24_RS12525	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J3Q24_RS12545	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3Q24_RS12550	COG1959	2 iron, 2 sulfur cluster binding
J3Q24_RS12555	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J3Q24_RS12555	COG1017	nitric oxide dioxygenase activity
J3Q24_RS12590	COG0488	(ABC) transporter
J3Q24_RS12595	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
J3Q24_RS12610	COG1024	Enoyl-CoA hydratase
J3Q24_RS12615	COG1619	proteins homologs of microcin C7 resistance protein MccF
J3Q24_RS12620	COG0590	tRNA wobble adenosine to inosine editing
J3Q24_RS12645	COG2212	antiporter activity
J3Q24_RS12650	COG1863	multisubunit Na H antiporter MnhE subunit
J3Q24_RS12655	COG0651	ATP synthesis coupled electron transport
J3Q24_RS12660	COG1006	Multisubunit Na H antiporter MnhC subunit
J3Q24_RS12665	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J3Q24_RS12665	COG2111	Na H antiporter
J3Q24_RS12685	COG0583	DNA-binding transcription factor activity
J3Q24_RS12690	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS12720	COG0431	NADPH-dependent FMN reductase
J3Q24_RS12765	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS12770	COG0179	Fumarylacetoacetate (FAA) hydrolase
J3Q24_RS12800	COG0625	glutathione transferase activity
J3Q24_RS12810	COG2944	sequence-specific DNA binding
J3Q24_RS12820	COG2197	response regulator
J3Q24_RS12845	COG3119	arylsulfatase activity
J3Q24_RS12880	COG0714	Associated with various cellular activities
J3Q24_RS12900	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS12905	COG0861	Integral membrane protein TerC family
J3Q24_RS12950	COG0300	oxidoreductase activity
J3Q24_RS12975	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
J3Q24_RS12990	COG0438	transferase activity, transferring glycosyl groups
J3Q24_RS13015	COG0463	Glycosyl transferase, family 2
J3Q24_RS13030	COG0783	Belongs to the Dps family
J3Q24_RS13045	COG0583	DNA-binding transcription factor activity
J3Q24_RS13050	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J3Q24_RS13065	COG0656	L-ascorbic acid biosynthetic process
J3Q24_RS13075	COG0583	DNA-binding transcription factor activity
J3Q24_RS13085	COG1840	ABC-type Fe3 transport system, periplasmic component
J3Q24_RS13090	COG1178	ABC-type Fe3 transport system permease component
J3Q24_RS13095	COG3842	ATPase activity
J3Q24_RS13105	COG1741	Belongs to the pirin family
J3Q24_RS13110	COG1741	Belongs to the pirin family
J3Q24_RS13115	COG0583	DNA-binding transcription factor activity
J3Q24_RS13120	COG2204	response regulator
J3Q24_RS13130	COG0174	glutamine synthetase
J3Q24_RS13135	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J3Q24_RS13145	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
J3Q24_RS13150	COG2200	EAL domain
J3Q24_RS13150	COG2199	diguanylate cyclase activity
J3Q24_RS13170	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J3Q24_RS13175	COG1561	YicC-like family, N-terminal region
J3Q24_RS13190	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
J3Q24_RS13195	COG0791	NLP P60 protein
J3Q24_RS13200	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS13205	COG2863	cytochrome
J3Q24_RS13210	COG3258	Cytochrome c
J3Q24_RS13215	COG0194	GDP metabolic process
J3Q24_RS13220	COG1758	RNA polymerase activity
J3Q24_RS13225	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J3Q24_RS13230	COG1126	abc transporter atp-binding protein
J3Q24_RS13235	COG0765	amino acid transport
J3Q24_RS13240	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3Q24_RS13255	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J3Q24_RS13260	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
J3Q24_RS13265	COG3539	Fimbrial protein
J3Q24_RS13270	COG2850	peptidyl-arginine hydroxylation
J3Q24_RS13275	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
J3Q24_RS13280	COG3360	Dodecin
J3Q24_RS13320	COG0009	L-threonylcarbamoyladenylate synthase
J3Q24_RS13325	COG2321	neutral zinc metallopeptidase
J3Q24_RS13350	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J3Q24_RS13355	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
J3Q24_RS13360	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J3Q24_RS13370	COG1074	ATP-dependent DNA helicase activity
J3Q24_RS13385	COG2814	Major facilitator Superfamily
J3Q24_RS13395	COG1686	Belongs to the peptidase S11 family
J3Q24_RS13410	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
J3Q24_RS13415	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
J3Q24_RS13420	COG4974	Belongs to the 'phage' integrase family
J3Q24_RS13425	COG0583	DNA-binding transcription factor activity
J3Q24_RS13430	COG0028	Belongs to the TPP enzyme family
J3Q24_RS13445	COG0028	Belongs to the TPP enzyme family
J3Q24_RS13450	COG1126	abc transporter atp-binding protein
J3Q24_RS13455	COG0765	amino acid transport
J3Q24_RS13470	COG1414	Transcriptional regulator
J3Q24_RS13475	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3Q24_RS13480	COG0009	L-threonylcarbamoyladenylate synthase
J3Q24_RS13485	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
J3Q24_RS13490	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J3Q24_RS13495	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
J3Q24_RS13505	COG2944	sequence-specific DNA binding
J3Q24_RS13515	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J3Q24_RS13570	COG1126	abc transporter atp-binding protein
J3Q24_RS13575	COG0765	amino acid transport
J3Q24_RS13580	COG0765	amino acid transport
J3Q24_RS13585	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3Q24_RS13595	COG2423	ornithine cyclodeaminase activity
J3Q24_RS13610	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J3Q24_RS13615	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J3Q24_RS13625	COG0189	ligase activity
J3Q24_RS13630	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
J3Q24_RS13635	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J3Q24_RS13640	COG2197	response regulator
J3Q24_RS13680	COG3022	response to hydroperoxide
J3Q24_RS13695	COG0135	phosphoribosylanthranilate isomerase activity
J3Q24_RS13715	COG0101	tRNA pseudouridine synthase activity
J3Q24_RS13725	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J3Q24_RS13730	COG0473	3-isopropylmalate dehydrogenase activity
J3Q24_RS13735	COG0066	3-isopropylmalate dehydratase activity
J3Q24_RS13740	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
J3Q24_RS13750	COG1122	ATPase activity
J3Q24_RS13785	COG0243	molybdopterin cofactor binding
J3Q24_RS13785	COG3383	formate dehydrogenase (NAD+) activity
J3Q24_RS13815	COG0489	protein tyrosine kinase activity
J3Q24_RS13820	COG0746	molybdenum cofactor guanylyltransferase activity
J3Q24_RS13825	COG0303	'Molybdopterin
J3Q24_RS13830	COG1763	Mo-molybdopterin cofactor biosynthetic process
J3Q24_RS13840	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
J3Q24_RS13845	COG5001	Diguanylate cyclase
J3Q24_RS13870	COG3842	ATPase activity
J3Q24_RS13880	COG0406	alpha-ribazole phosphatase activity
J3Q24_RS13890	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J3Q24_RS13895	COG0505	Belongs to the CarA family
J3Q24_RS13900	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J3Q24_RS13935	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
J3Q24_RS13940	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS13950	COG2867	negative regulation of translational initiation
J3Q24_RS13960	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
J3Q24_RS13965	COG3706	GGDEF domain
J3Q24_RS13970	COG0330	HflC and HflK could
J3Q24_RS13985	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J3Q24_RS13985	COG0519	Catalyzes the synthesis of GMP from XMP
J3Q24_RS13995	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
J3Q24_RS14000	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J3Q24_RS14005	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J3Q24_RS14010	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J3Q24_RS14020	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J3Q24_RS14025	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J3Q24_RS14030	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
J3Q24_RS14035	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J3Q24_RS14040	COG0750	zinc metalloprotease
J3Q24_RS14045	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
J3Q24_RS14055	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J3Q24_RS14060	COG0233	cytoplasmic translational termination
J3Q24_RS14065	COG0528	UMP kinase activity
J3Q24_RS14070	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
J3Q24_RS14075	COG0052	Belongs to the universal ribosomal protein uS2 family
J3Q24_RS14080	COG0024	Methionine aminopeptidase
J3Q24_RS14085	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
J3Q24_RS14115	COG0285	dihydrofolate synthase activity
J3Q24_RS14155	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
J3Q24_RS14165	COG1677	Flagellar hook-basal body complex protein FliE
J3Q24_RS14175	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J3Q24_RS14185	COG1157	protein secretion by the type III secretion system
J3Q24_RS14210	COG1580	Controls the rotational direction of flagella during chemotaxis
J3Q24_RS14230	COG1338	Plays a role in the flagellum-specific transport system
J3Q24_RS14250	COG0840	transmembrane signaling receptor activity
J3Q24_RS14255	COG0840	transmembrane signaling receptor activity
J3Q24_RS14260	COG0840	transmembrane signaling receptor activity
J3Q24_RS14270	COG1256	bacterial-type flagellum assembly
J3Q24_RS14280	COG1706	bacterial-type flagellum-dependent cell motility
J3Q24_RS14285	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
J3Q24_RS14300	COG1749	Flagellar hook protein flgE
J3Q24_RS14310	COG1558	bacterial-type flagellum-dependent cell motility
J3Q24_RS14315	COG1815	bacterial-type flagellum-dependent cell motility
J3Q24_RS14355	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3Q24_RS14360	COG0765	amino acid transport
J3Q24_RS14365	COG1126	abc transporter atp-binding protein
J3Q24_RS14380	COG4948	Mandelate Racemase Muconate Lactonizing
J3Q24_RS14385	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS14395	COG0066	3-isopropylmalate dehydratase activity
J3Q24_RS14410	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS14420	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS14430	COG1802	Transcriptional regulator
J3Q24_RS14445	COG0583	DNA-binding transcription factor activity
J3Q24_RS14465	COG1695	Transcriptional regulator
J3Q24_RS14475	COG3568	Endonuclease Exonuclease Phosphatase
J3Q24_RS14480	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J3Q24_RS14530	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J3Q24_RS14540	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J3Q24_RS14560	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
J3Q24_RS14590	COG0667	Aldo Keto reductase
J3Q24_RS14605	COG2259	Doxx family
J3Q24_RS14635	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS14655	COG0386	Belongs to the glutathione peroxidase family
J3Q24_RS14660	COG0625	glutathione transferase activity
J3Q24_RS14675	COG0095	Lipoate-protein ligase
J3Q24_RS14690	COG0688	phosphatidylethanolamine metabolic process
J3Q24_RS14700	COG1464	Belongs to the NlpA lipoprotein family
J3Q24_RS14715	COG2363	Small membrane protein
J3Q24_RS14740	COG3842	ATPase activity
J3Q24_RS14745	COG0395	ABC-type sugar transport system, permease component
J3Q24_RS14750	COG1175	transmembrane transport
J3Q24_RS14755	COG1653	transport
J3Q24_RS14765	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
J3Q24_RS14780	COG0559	Belongs to the binding-protein-dependent transport system permease family
J3Q24_RS14800	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
J3Q24_RS14825	COG2311	Membrane
J3Q24_RS14850	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
J3Q24_RS14860	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
J3Q24_RS14865	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J3Q24_RS14870	COG1760	l-serine dehydratase
J3Q24_RS14875	COG1283	sodium-dependent phosphate transmembrane transporter activity
J3Q24_RS14880	COG0412	Dienelactone hydrolase
J3Q24_RS14895	COG1611	Belongs to the LOG family
J3Q24_RS14915	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
J3Q24_RS14920	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J3Q24_RS14925	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
J3Q24_RS14930	COG0195	Participates in both transcription termination and antitermination
J3Q24_RS14930	COG2251	uridine kinase activity
J3Q24_RS14935	COG0779	Required for maturation of 30S ribosomal subunits
J3Q24_RS14940	COG1187	pseudouridine synthase activity
J3Q24_RS14945	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
J3Q24_RS14955	COG0583	DNA-binding transcription factor activity
J3Q24_RS14965	COG0523	cobalamin synthesis protein
J3Q24_RS14985	COG0625	glutathione transferase activity
J3Q24_RS14990	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J3Q24_RS14995	COG1047	Peptidyl-prolyl cis-trans
J3Q24_RS15000	COG2003	Belongs to the UPF0758 family
J3Q24_RS15005	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
J3Q24_RS15010	COG3483	tryptophan 2,3-dioxygenase activity
J3Q24_RS15015	COG0254	rRNA binding
J3Q24_RS15025	COG0534	Mate efflux family protein
J3Q24_RS15045	COG2304	oxidoreductase activity
J3Q24_RS15065	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS15070	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J3Q24_RS15075	COG1562	ergosterol biosynthetic process
J3Q24_RS15080	COG1562	ergosterol biosynthetic process
J3Q24_RS15085	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
J3Q24_RS15085	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
J3Q24_RS15090	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
J3Q24_RS15100	COG0842	Transport permease protein
J3Q24_RS15105	COG1131	(ABC) transporter
J3Q24_RS15125	COG1477	protein flavinylation
J3Q24_RS15140	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
J3Q24_RS15155	COG5564	TIM-barrel signal transduction protein
J3Q24_RS15160	COG5441	Belongs to the UPF0261 family
J3Q24_RS15170	COG3468	outer membrane autotransporter barrel domain protein
J3Q24_RS15190	COG0542	response to heat
J3Q24_RS15195	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J3Q24_RS15210	COG0494	nUDIX hydrolase
J3Q24_RS15215	COG3530	Putative quorum-sensing-regulated virulence factor
J3Q24_RS15225	COG1595	DNA-templated transcription, initiation
J3Q24_RS15230	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J3Q24_RS15265	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3Q24_RS15270	COG0765	amino acid transport
J3Q24_RS15275	COG0765	amino acid transport
J3Q24_RS15315	COG2988	succinylglutamate desuccinylase activity
J3Q24_RS15340	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS15345	COG2084	Dehydrogenase
J3Q24_RS15360	COG1619	proteins homologs of microcin C7 resistance protein MccF
J3Q24_RS15370	COG2814	Major facilitator Superfamily
J3Q24_RS15380	COG0583	DNA-binding transcription factor activity
J3Q24_RS15420	COG0672	)-iron permease
J3Q24_RS15435	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
J3Q24_RS15440	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS15445	COG3243	poly(R)-hydroxyalkanoic acid synthase
J3Q24_RS15455	COG0564	pseudouridine synthase activity
J3Q24_RS15465	COG1199	ATP-dependent helicase activity
J3Q24_RS15470	COG2183	response to ionizing radiation
J3Q24_RS15475	COG0180	Tryptophanyl-tRNA synthetase
J3Q24_RS15500	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS15510	COG0583	DNA-binding transcription factor activity
J3Q24_RS15515	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS15520	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
J3Q24_RS15525	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J3Q24_RS15530	COG0508	dehydrogenase complex catalyzes the overall conversion of
J3Q24_RS15535	COG0567	Dehydrogenase, E1 component
J3Q24_RS15545	COG1522	sequence-specific DNA binding
J3Q24_RS15555	COG0280	phosphate acetyltransferase
J3Q24_RS15555	COG0281	malic enzyme
J3Q24_RS15560	COG3539	Fimbrial protein
J3Q24_RS15575	COG0613	PHP domain protein
J3Q24_RS15585	COG2333	competence protein COMEC
J3Q24_RS15585	COG0658	competence protein
J3Q24_RS15610	COG0084	hydrolase, TatD family'
J3Q24_RS15615	COG1136	(ABC) transporter
J3Q24_RS15630	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J3Q24_RS15640	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS15645	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
J3Q24_RS15660	COG1022	Amp-dependent synthetase and ligase
J3Q24_RS15695	COG2205	protein histidine kinase activity
J3Q24_RS15700	COG0745	RESPONSE REGULATOR receiver
J3Q24_RS15705	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
J3Q24_RS15715	COG1295	ribonuclease BN
J3Q24_RS15735	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J3Q24_RS15760	COG1534	Rna-binding protein
J3Q24_RS15765	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
J3Q24_RS15775	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J3Q24_RS15785	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J3Q24_RS15795	COG0248	Ppx GppA phosphatase
J3Q24_RS15820	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J3Q24_RS15840	COG2732	(Barnase) inhibitor
J3Q24_RS15850	COG0281	malic enzyme
J3Q24_RS15850	COG0280	phosphate acetyltransferase
J3Q24_RS15860	COG0436	Aminotransferase
J3Q24_RS15865	COG0741	lytic transglycosylase activity
J3Q24_RS15870	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
J3Q24_RS15895	COG1648	precorrin-2 dehydrogenase activity
J3Q24_RS15895	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J3Q24_RS15920	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
J3Q24_RS15925	COG2027	D-alanyl-D-alanine carboxypeptidase
J3Q24_RS15930	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
J3Q24_RS15935	COG0343	queuine tRNA-ribosyltransferase activity
J3Q24_RS15940	COG1862	Preprotein translocase
J3Q24_RS15945	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J3Q24_RS15950	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J3Q24_RS15965	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J3Q24_RS15970	COG1702	phosphate starvation-inducible protein PhoH
J3Q24_RS15975	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
J3Q24_RS15980	COG4535	Mg2 and Co2 transporter CorC
J3Q24_RS15990	COG0667	Aldo Keto reductase
J3Q24_RS16015	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
J3Q24_RS16020	COG0745	RESPONSE REGULATOR receiver
J3Q24_RS16025	COG2201	protein-glutamate methylesterase activity
J3Q24_RS16035	COG0840	transmembrane signaling receptor activity
J3Q24_RS16050	COG0745	RESPONSE REGULATOR receiver
J3Q24_RS16085	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
J3Q24_RS16095	COG0739	heme binding
J3Q24_RS16105	COG0521	Mo-molybdopterin cofactor biosynthetic process
J3Q24_RS16115	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
J3Q24_RS16155	COG0625	glutathione transferase activity
J3Q24_RS16170	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J3Q24_RS16175	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
J3Q24_RS16180	COG0126	phosphoglycerate kinase activity
J3Q24_RS16185	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J3Q24_RS16190	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J3Q24_RS16195	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J3Q24_RS16205	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J3Q24_RS16210	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J3Q24_RS16215	COG0508	dehydrogenase complex catalyzes the overall conversion of
J3Q24_RS16220	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
J3Q24_RS16230	COG4566	intracellular signal transduction
J3Q24_RS16235	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J3Q24_RS16240	COG0339	signal peptide processing
J3Q24_RS16245	COG1999	signal sequence binding
J3Q24_RS16285	COG1187	pseudouridine synthase activity
J3Q24_RS16290	COG3161	chorismate lyase activity
J3Q24_RS16305	COG0667	Aldo Keto reductase
J3Q24_RS16320	COG0335	large ribosomal subunit rRNA binding
J3Q24_RS16355	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
J3Q24_RS16375	COG0450	alkyl hydroperoxide reductase
J3Q24_RS16380	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS16395	COG0123	including yeast histone deacetylase and acetoin utilization protein
J3Q24_RS16400	COG2951	lytic endotransglycosylase activity
J3Q24_RS16415	COG1596	polysaccharide export
J3Q24_RS16415	COG1555	photosystem II stabilization
J3Q24_RS16420	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3Q24_RS16425	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
J3Q24_RS16430	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
J3Q24_RS16450	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
J3Q24_RS16455	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
J3Q24_RS16460	COG0287	Prephenate dehydrogenase
J3Q24_RS16470	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
J3Q24_RS16485	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J3Q24_RS16495	COG2814	Major facilitator Superfamily
J3Q24_RS16520	COG0583	DNA-binding transcription factor activity
J3Q24_RS16555	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J3Q24_RS16570	COG0667	Aldo Keto reductase
J3Q24_RS16580	COG5265	(ABC) transporter
J3Q24_RS16625	COG0439	Biotin carboxylase
J3Q24_RS16630	COG2188	Transcriptional regulator
J3Q24_RS16655	COG0511	ligase activity, forming carbon-carbon bonds
J3Q24_RS16665	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J3Q24_RS16685	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
J3Q24_RS16705	COG0500	methyltransferase
J3Q24_RS16710	COG5265	(ABC) transporter
J3Q24_RS16725	COG0028	Belongs to the TPP enzyme family
J3Q24_RS16730	COG0440	acetolactate synthase activity
J3Q24_RS16735	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
J3Q24_RS16740	COG1183	phosphatidylcholine synthase activity
J3Q24_RS16750	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J3Q24_RS16755	COG1185	polyribonucleotide nucleotidyltransferase activity
J3Q24_RS16770	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
J3Q24_RS16790	COG0149	triose-phosphate isomerase activity
J3Q24_RS16795	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J3Q24_RS16805	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J3Q24_RS16815	COG3799	methylaspartate ammonia-lyase activity
J3Q24_RS16850	COG0583	DNA-binding transcription factor activity
J3Q24_RS16855	COG0626	cystathionine gamma-synthase activity
J3Q24_RS16860	COG3608	succinylglutamate desuccinylase aspartoacylase
J3Q24_RS16880	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3Q24_RS16900	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
J3Q24_RS16915	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J3Q24_RS16920	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J3Q24_RS16925	COG1733	regulation of RNA biosynthetic process
J3Q24_RS16935	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J3Q24_RS16940	COG0583	DNA-binding transcription factor activity
J3Q24_RS16955	COG0671	phosphoesterase, PA-phosphatase related
J3Q24_RS16985	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J3Q24_RS16990	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J3Q24_RS16995	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J3Q24_RS17000	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J3Q24_RS17005	COG0649	NAD binding
J3Q24_RS17010	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
J3Q24_RS17020	COG1034	ATP synthesis coupled electron transport
J3Q24_RS17025	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
J3Q24_RS17030	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J3Q24_RS17040	COG0713	ATP synthesis coupled electron transport
J3Q24_RS17055	COG1007	ATP synthesis coupled electron transport
J3Q24_RS17065	COG4774	siderophore transport
J3Q24_RS17070	COG4774	siderophore transport
J3Q24_RS17085	COG0028	Belongs to the TPP enzyme family
J3Q24_RS17090	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS17095	COG0583	DNA-binding transcription factor activity
J3Q24_RS17100	COG0560	Phosphoserine phosphatase
J3Q24_RS17105	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J3Q24_RS17110	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
J3Q24_RS17115	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
J3Q24_RS17125	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
J3Q24_RS17130	COG0308	aminopeptidase N
J3Q24_RS17150	COG0028	Belongs to the TPP enzyme family
J3Q24_RS17170	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3Q24_RS17180	COG0318	PFAM AMP-dependent synthetase and ligase
J3Q24_RS17190	COG1802	Transcriptional regulator
J3Q24_RS17200	COG1802	Transcriptional regulator
J3Q24_RS17210	COG1028	Short-chain dehydrogenase reductase Sdr
J3Q24_RS17230	COG1126	abc transporter atp-binding protein
J3Q24_RS17235	COG0765	amino acid transport
J3Q24_RS17255	COG1538	Outer membrane efflux protein
J3Q24_RS17260	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J3Q24_RS17265	COG2274	protein secretion by the type I secretion system
J3Q24_RS17270	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
J3Q24_RS17275	COG2994	toxin metabolic process
J3Q24_RS17300	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3Q24_RS17305	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
J3Q24_RS17315	COG0583	DNA-binding transcription factor activity
J3Q24_RS17325	COG0142	geranyltranstransferase activity
J3Q24_RS17335	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J3Q24_RS17340	COG0211	Belongs to the bacterial ribosomal protein bL27 family
J3Q24_RS17345	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
J3Q24_RS17350	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J3Q24_RS17395	COG3712	iron ion homeostasis
J3Q24_RS17400	COG4774	siderophore transport
J3Q24_RS17405	COG2353	YceI-like domain
J3Q24_RS17420	COG0019	diaminopimelate decarboxylase activity
J3Q24_RS17440	COG0747	negative chemotaxis
J3Q24_RS17445	COG0601	transmembrane transport
J3Q24_RS17450	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J3Q24_RS17460	COG0154	amidase activity
J3Q24_RS17465	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J3Q24_RS17490	COG2154	pterin-4-alpha-carbinolamine dehydratase
J3Q24_RS17500	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
J3Q24_RS17510	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
J3Q24_RS17515	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J3Q24_RS17520	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J3Q24_RS17525	COG1929	Belongs to the glycerate kinase type-1 family
J3Q24_RS17530	COG0469	pyruvate kinase activity
J3Q24_RS17535	COG0700	Nucleoside recognition
J3Q24_RS17565	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
J3Q24_RS17570	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J3Q24_RS17585	COG0823	Involved in the tonB-independent uptake of proteins
J3Q24_RS17595	COG0848	biopolymer transport protein
J3Q24_RS17600	COG0811	peptide transport
J3Q24_RS17605	COG0824	Thioesterase
J3Q24_RS17610	COG0442	prolyl-tRNA aminoacylation
J3Q24_RS17615	COG0494	nUDIX hydrolase
J3Q24_RS17630	COG2135	peptidase activity
J3Q24_RS17700	COG1196	nuclear chromosome segregation
J3Q24_RS17840	COG1464	Belongs to the NlpA lipoprotein family
J3Q24_RS17870	COG4211	Belongs to the binding-protein-dependent transport system permease family
J3Q24_RS17880	COG0154	amidase activity
J3Q24_RS17885	COG0288	reversible hydration of carbon dioxide
J3Q24_RS17900	COG0514	ATP-dependent DNA helicase (RecQ)
J3Q24_RS17905	COG2255	four-way junction helicase activity
J3Q24_RS17920	COG0632	four-way junction helicase activity
J3Q24_RS17925	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
J3Q24_RS17945	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J3Q24_RS17955	COG0006	proline dipeptidase activity
J3Q24_RS17980	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J3Q24_RS17995	COG4783	chaperone-mediated protein folding
J3Q24_RS18000	COG0429	hydrolase of the alpha beta-hydrolase fold
J3Q24_RS18030	COG0513	Belongs to the DEAD box helicase family
J3Q24_RS18050	COG1058	Belongs to the CinA family
J3Q24_RS18050	COG1546	Belongs to the CinA family
J3Q24_RS18055	COG1414	Transcriptional regulator
J3Q24_RS18075	COG0167	dihydroorotate dehydrogenase activity
J3Q24_RS18080	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
J3Q24_RS18095	COG0583	DNA-binding transcription factor activity
J3Q24_RS18160	COG0281	malic enzyme
J3Q24_RS18160	COG0280	phosphate acetyltransferase
J3Q24_RS18170	COG0601	transmembrane transport
J3Q24_RS18175	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J3Q24_RS18180	COG4172	Belongs to the ABC transporter superfamily
J3Q24_RS18210	COG0640	Transcriptional regulator
J3Q24_RS18225	COG3135	benzoate transporter
J3Q24_RS18230	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J3Q24_RS18235	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
J3Q24_RS18240	COG0742	ribosomal rna small subunit methyltransferase
J3Q24_RS18255	COG3639	organic phosphonate transmembrane transporter activity
J3Q24_RS18260	COG3639	organic phosphonate transmembrane transporter activity
J3Q24_RS18300	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
J3Q24_RS18305	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J3Q24_RS18315	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
J3Q24_RS18320	COG1546	Belongs to the CinA family
J3Q24_RS18320	COG1058	Belongs to the CinA family
J3Q24_RS18325	COG0284	orotidine-5'-phosphate decarboxylase activity
J3Q24_RS18330	COG1252	NADH dehydrogenase
J3Q24_RS18345	COG3468	outer membrane autotransporter barrel domain protein
J3Q24_RS18350	COG0459	protein refolding
J3Q24_RS18355	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
J3Q24_RS18375	COG1053	succinate dehydrogenase
J3Q24_RS18390	COG0583	DNA-binding transcription factor activity
J3Q24_RS18395	COG1053	succinate dehydrogenase
J3Q24_RS18415	COG3706	GGDEF domain
J3Q24_RS18455	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
J3Q24_RS18465	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J3Q24_RS18475	COG0069	glutamate synthase activity
J3Q24_RS18480	COG2391	methyltransferase activity
J3Q24_RS18485	COG0679	Auxin Efflux Carrier
J3Q24_RS18510	COG0557	exoribonuclease II activity
J3Q24_RS18515	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J3Q24_RS18525	COG3128	pkhd-type hydroxylase
J3Q24_RS18530	COG0776	regulation of translation
J3Q24_RS18560	COG0642	Histidine kinase
J3Q24_RS18565	COG3158	transport of potassium into the cell
J3Q24_RS18570	COG0137	argininosuccinate synthase activity
J3Q24_RS18575	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
J3Q24_RS18580	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J3Q24_RS18590	COG0583	DNA-binding transcription factor activity
J3Q24_RS18600	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J3Q24_RS18620	COG2186	Transcriptional regulator
J3Q24_RS18630	COG2223	nitrite transmembrane transporter activity
J3Q24_RS18640	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J3Q24_RS18645	COG0450	alkyl hydroperoxide reductase
J3Q24_RS18665	COG1214	PFAM Peptidase M22, glycoprotease
J3Q24_RS18670	COG1573	uracil-dna glycosylase
J3Q24_RS18675	COG0477	Major facilitator Superfamily
J3Q24_RS18680	COG1196	nuclear chromosome segregation
J3Q24_RS18690	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J3Q24_RS18695	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J3Q24_RS18710	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J3Q24_RS18715	COG1122	ATPase activity
J3Q24_RS18720	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
J3Q24_RS18725	COG1268	BioY protein
J3Q24_RS18745	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J3Q24_RS18780	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J3Q24_RS18785	COG2878	Part of a membrane complex involved in electron transport
J3Q24_RS18800	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
J3Q24_RS18805	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
J3Q24_RS18810	COG0251	oxidation-reduction process
J3Q24_RS18820	COG3228	Belongs to the MtfA family
J3Q24_RS18825	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J3Q24_RS18835	COG0133	tryptophan synthase activity
J3Q24_RS18840	COG0159	tryptophan synthase activity
J3Q24_RS18845	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
J3Q24_RS18870	COG1530	ribonuclease E activity
J3Q24_RS18880	COG0546	phosphoglycolate phosphatase activity
J3Q24_RS18885	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
J3Q24_RS18890	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
J3Q24_RS18900	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS18905	COG0583	DNA-binding transcription factor activity
J3Q24_RS18915	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS18935	COG0251	oxidation-reduction process
J3Q24_RS18940	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J3Q24_RS18940	COG1017	nitric oxide dioxygenase activity
J3Q24_RS18945	COG2031	fatty acid transporter
J3Q24_RS18950	COG1012	belongs to the aldehyde dehydrogenase family
J3Q24_RS18955	COG1802	Transcriptional regulator
J3Q24_RS18965	COG1278	Cold shock
J3Q24_RS18970	COG0583	DNA-binding transcription factor activity
J3Q24_RS18985	COG0183	Belongs to the thiolase family
J3Q24_RS18995	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS19000	COG0583	DNA-binding transcription factor activity
J3Q24_RS19005	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS19010	COG1024	Enoyl-CoA hydratase
J3Q24_RS19015	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS19020	COG1253	flavin adenine dinucleotide binding
J3Q24_RS19025	COG1285	pathogenesis
J3Q24_RS19035	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J3Q24_RS19050	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J3Q24_RS19060	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J3Q24_RS19070	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3Q24_RS19075	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS19080	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS19100	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J3Q24_RS19105	COG1024	Enoyl-CoA hydratase
J3Q24_RS19110	COG1960	acyl-CoA dehydrogenase activity
J3Q24_RS19130	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J3Q24_RS19135	COG0022	dehydrogenase e1 component
J3Q24_RS19140	COG1024	Enoyl-CoA hydratase
J3Q24_RS19145	COG0508	dehydrogenase complex catalyzes the overall conversion of
J3Q24_RS19165	COG0683	leucine binding
J3Q24_RS19170	COG0559	Belongs to the binding-protein-dependent transport system permease family
J3Q24_RS19175	COG0411	ABC transporter
J3Q24_RS19185	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J3Q24_RS19200	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS19225	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J3Q24_RS19230	COG0793	Belongs to the peptidase S41A family
J3Q24_RS19235	COG4942	peptidase
J3Q24_RS19240	COG0588	phosphoglycerate mutase activity
J3Q24_RS19245	COG1054	Belongs to the UPF0176 family
J3Q24_RS19250	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J3Q24_RS19255	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
J3Q24_RS19260	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J3Q24_RS19265	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS19280	COG2226	methyltransferase
J3Q24_RS19285	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
J3Q24_RS19300	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3Q24_RS19305	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
J3Q24_RS19330	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
J3Q24_RS19355	COG1335	isochorismatase
J3Q24_RS19360	COG2309	aminopeptidase activity
J3Q24_RS19370	COG3473	Maleate cis-trans isomerase
J3Q24_RS19380	COG2068	MobA-Related Protein
J3Q24_RS19405	COG2204	response regulator
J3Q24_RS19410	COG5000	phosphorelay sensor kinase activity
J3Q24_RS19420	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J3Q24_RS19420	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J3Q24_RS19430	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
J3Q24_RS19455	COG0583	DNA-binding transcription factor activity
J3Q24_RS19475	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J3Q24_RS19480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3Q24_RS19495	COG0758	DNA mediated transformation
J3Q24_RS19500	COG1522	sequence-specific DNA binding
J3Q24_RS19510	COG0242	peptide deformylase activity
J3Q24_RS19520	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J3Q24_RS19530	COG0546	phosphoglycolate phosphatase activity
J3Q24_RS19550	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J3Q24_RS19555	COG1942	4-Oxalocrotonate Tautomerase
J3Q24_RS19560	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3Q24_RS19580	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J3Q24_RS19600	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J3Q24_RS19605	COG1024	Enoyl-CoA hydratase
J3Q24_RS19610	COG1414	Transcriptional regulator
J3Q24_RS19615	COG0318	PFAM AMP-dependent synthetase and ligase
J3Q24_RS19620	COG3181	Tripartite tricarboxylate transporter family receptor
J3Q24_RS19660	COG3422	double-strand break repair
J3Q24_RS19665	COG0330	HflC and HflK could
J3Q24_RS19675	COG0251	oxidation-reduction process
J3Q24_RS19720	COG3723	Recombinational DNA repair protein, rece pathway
J3Q24_RS19750	COG0582	viral genome integration into host DNA
J3Q24_RS19785	COG0706	membrane insertase activity
J3Q24_RS19790	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
J3Q24_RS19795	COG0594	ribonuclease P activity
J3Q24_RS19800	COG0230	Belongs to the bacterial ribosomal protein bL34 family