CXD78_RS00015    3394 ..    3417 +  -6.8  -2.96979   AGAACGCGTCAAAGA          GCTGG-ATTGA ACC TCGATGCCAGC          TGTGCTTGCTGTTCC  51 16
CXD78_RS00020 NONE
CXD78_RS00025    5210 ..    5241 +  -3.6  -3.14344   ACGCGGCCAGCGGCG      CTTACCG-CGCCG GCTCGTA CGGCGTCGGGCAG      TTGCTGGCGGCCGTG  45 103
CXD78_RS00035    6413 ..    6434 +  -7.3  -4.09685   CTCAGCAAGACGAAA           TCCAGGTGCG GTT CG-GCCTGGA           TTTTGCAACGTAAGG  67 116
CXD78_RS00040 NONE
CXD78_RS00045    6668 ..    6680 +  -2.7  -3.65046   GTCATGGGCACCATC                GAATT CTA AGTTC                TTCTTCAAGTCAGAA  53 28
         tuf    7926 ..    7960 + -18.1  -3.72893   AAGGCGCGGTTTTCC    CATGGATAGAGGGGCC GGAT GGCC-CTCTATCCATG     TTTGCTGGAAAAGTA  93 39
CXD78_RS00055 NONE
        secE NONE
        nusG    9056 ..    9074 +  -4.5  -4.07568   CGAACTCGATTTCAG             CCAGGTC GAAAA GACCTGA             TTTTCAAACCCCGGG  62 7
        rplK NONE
CXD78_RS00075   10300 ..   10321 + -14.5  -2.62184   ATAGAACTTTGGGCC           GCATCCGGA CTTG TCCGGATGC            TGCTGTCAAAGACCG  71 55
CXD78_RS00080   11043 ..   11056 +  -2.3  -3.05384   GGCGGCCTGATCAGG               CTCCG CGTC CGGAA                TTCGCTGAACGACAA  41 31
CXD78_RS00085   11517 ..   11549 + -17.7  -4.35524   AGACCTCGCGTCGAC      GCCCGGGGACAGC GCTCTTA GCCGTCCCCGGGC      TTTTGCGTTTCCAGG 100 40
        rpoB NONE
        rpoC   20076 ..   20099 + -16.8   -4.4078   CGACAGCCAAAAAAA          GGCCGCTGAT GCAT ATCAGCGGCC           TTTTGCTTGACGCGG 100 83
CXD78_RS00105   22150 ..   22174 +  -3.4  -3.02144   AGCCCCAGGCCAGCG          CCGCCTACTT CGTTC GAGCCGGCGG          TGTTGACGCGCGTAA  42 228
CXD78_RS00125   27452 ..   27486 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS00160 NONE
CXD78_RS00165   34454 ..   34511 + -16.7  -3.53224   ACCTGATGGCGCTGT GCGAACCCGCGCCATGACGCCGGGCCGG CGC CCGGCACGGCCCCGCGGCCCGGGC-CGC TTTGCGGGCCGACTA  86 9
CXD78_RS00170 NONE
        glyQ NONE
CXD78_RS00185 NONE
CXD78_RS00190   40595 ..   40613 +  -2.2  -2.53015   CAACTGCTGCAGGAG             GCCTGATC CAT GGCCTGGC             TGCGTTCGGCGCTGT  37 20
CXD78_RS00195 NONE
CXD78_RS00200   42211 ..   42236 +  -5.9  -3.74693   CCCTGCCGCAGTTCT         GAGCCCGCGCC GGCT GGCGCGGCCGA          TTTGCTACGATGACG  59 24
        gloA NONE
CXD78_RS00210   43600 ..   43610 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  57 407
CXD78_RS00220   45098 ..   45110 +  -6.2  -2.71144   GGCCACGCCCGGGGC                CGCC GGCCA GGCG                TAATTGGCCAGGCTG  47 509
CXD78_RS00230   46039 ..   46051 +  -6.2  -3.96531   AGTCTCGATTCGTGG                CGGC ATCAA GCCG                TTTATCCATATCTGA  64 315
CXD78_RS00240   47473 ..   47511 + -10.9  -3.14132   GGGCCAGGTTGATCT  CCAGCGGCGCGGCGGC GCGGGAAG GCCGCCGCGAC-CGGG   TTGGTGCCCAGCAGC  64 520
CXD78_RS00250 NONE
        metW   50078 ..   50088 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 97
CXD78_RS00265   51098 ..   51113 +  -3.2  -2.70932   TCACAGCTAGCAGGA              CCGG CGCGCCTA CCGG               TCGTTCCACGGGAGA  40 31
CXD78_RS00270   52437 ..   52452 +  -7.5  -3.14527   CGCTACCCGCGCAAG              CCGCC CGCAGT GGCGG               TATTGATAACAATTC  54 71
CXD78_RS00375   70070 ..   70080 +  -4.6  -3.07013   CAAGCATGGACGCAT                 GTCG CAA CGGC                 TGTATTGACCCAGTG  45 59
CXD78_RS00380   70668 ..   70678 +  -4.6  -3.10464   ATTCAACAAGAACAC                 CGTG CAG CGCG                 TGTTCCAGTTGATGG  47 249
        htpG   73562 ..   73594 +  -6.8  -4.08767   ATGCGCTCGATCAAG      GGGTGGCTGTCCCC GCGCG GGGGGCTGACACCG      TTTTGGCAGGCTGGC  67 43
CXD78_RS00420   77804 ..   77838 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS00430   79792 ..   79808 +  -2.1  -4.07568   AGTCTTCCCCGATCA              GCAGTTC TTC GTACAGC              TTTTCCCCGGGCCGC  58 213
        waaC   92972 ..   92998 +  -7.8  -2.89683   GGTCGAGCAGGCCCT         GGCGGCGGCCTG ACA TGGGCCGCGGCG         TCTATACCCTGGCGT  52 13
CXD78_RS00495   94274 ..   94284 +  -8.2  -3.14132   ATTGGCTGGGATAGC                 CCGC CGT GCGG                 TTCGTCAGGGCCGCA  56 27
CXD78_RS00515 NONE
CXD78_RS00520   98558 ..   98572 +  -4.2  -5.01732   CATGCCGGCCACCAT               CCCG CTGCGGC CGGG               TTTTTTCCAGCGCTT  81 404
CXD78_RS00530 NONE
CXD78_RS00535  100561 ..  100571 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 189
CXD78_RS00540 NONE
CXD78_RS00545 NONE
CXD78_RS00550  103792 ..  103817 + -13.2  -3.61178   CTGTAGCGGCCGGCA         GGCGGGCGGC CCTGGC GCCGCCCGCG          TTTCGCGTCCCTCGC  77 35
CXD78_RS00555 NONE
        lipB  104827 ..  104849 + -12.7  -3.31792   CTTTTTTGTCTCGAA           CCGGAGCGC GCCTG GCGTTCCGG           TTGTGAAGGTGCTCA  71 49
        lipA  105902 ..  105922 + -12.5  -2.60496   ATAGGTATCGGCCCG            CGCCAGCGC CAC GCCCTGGCG            GTCTTTCACCGACAG  64 61
        metC  111548 ..  111567 + -10.7  -3.89346   CCCATCAACGACAAA            GCCTCCG CATGGA CGGAGGC             TTTGTGGCGTCGGGG  77 53
CXD78_RS00615 NONE
CXD78_RS00620  115786 ..  115814 +    -6  -3.78419   GTCCGCAGGGGGACT        GGCACCGG CCAAATCCGACCT CCGGTGCC        TTGTATCTTTCCTCC  62 100
CXD78_RS00625  117066 ..  117081 +  -5.4  -2.72991   CCATGCTCCATCCGG              GGACAGG CAC CC-GTCC              TCCTTCAGCGTATCC  45 81
CXD78_RS00690  129777 ..  129819 +  -5.5   -3.1247   ACGGATCGCCGTCGA TACGGTGGCGGACCAGCTGC CAGG GCTGCTGCTGCGCCAG-GTA TTCGCTGTCGAAGAT  47 466
        rpoN  133636 ..  133651 +  -6.2  -4.30833   CCACGCCGCGGGTCG              TTAGGA CGCC TCCTAA               TTTGTTCCTGATTTC  73 22
CXD78_RS00710  134048 ..  134079 + -16.6  -3.96148   GAGCGACGCGGCGCC      TTGCGCCAGCCGGC TCAT GCTGCCTGGCGCAA       TTTATCGTCCCCACA  93 39
CXD78_RS00745  143838 ..  143851 +  -5.2  -3.77188   CGGGACGGATCCAGG               GCGC CGCATT GCGC                TATTTATGTTTCAAT  60 70
CXD78_RS00750  144611 ..  144631 +  -8.9  -3.96148   GAGCCGGGCGACGAC            CGCCTGCGC GTC GCGTAGGCC            TTTCTCCTCACGACA  70 8
CXD78_RS00780  151344 ..  151377 +  -7.4   -3.1505   CGGCCACGCCGGCCA     GCGCGCCGACCTGGT AGACC ACCAGGTCGTAG-GC     TTCCTGCGGGGTGAT  54 510
CXD78_RS00805  155113 ..  155134 +  -6.5  -4.28361   GAAGCGCACCAGTTT           C-TCGGCCAC TTC GCGGCCGATG           TTTTCCTGGGATTCC  72 374
        ubiE  161870 ..  161885 + -11.8  -3.53811   AAGGTTTGCCGCGCA              GGCCCC AACC GGGGCC               TTTCCAGCCGCTCCC  72 121
CXD78_RS00845  163040 ..  163067 + -19.2  -3.30007   CGGCCGGGCTGCACC        GTGAACCGGCCC GCCA GGGCCGGTTCGC         TTATGGGCCGGTCTT 100 103
CXD78_RS00850 NONE
        ubiB  165690 ..  165722 +  -4.8  -3.13403   TCAAGATGAACGCGA     TCACCGAGTGGGCGGC CTT GCCGGCCAC-CGA-GA     TGTTCCTGCGCGACA  47 330
CXD78_RS00885 NONE
CXD78_RS00890 NONE
CXD78_RS00895 NONE
CXD78_RS00900  174610 ..  174631 + -17.3   -4.7373   CAGCCGCAATGCAAA           GGGCGCACC GCAT GGTGCGCCC            TTTTTCATGCCATGG 100 48
CXD78_RS00910 NONE
CXD78_RS00915  176496 ..  176513 +  -6.3  -3.05844   ACAGGTCGTCGGCGA             TCAG-CGC CTC GCGGCTGA             TCTTGCGCTCGGGCG  49 219
CXD78_RS00925  178024 ..  178034 +  -6.8  -2.62735   TGGGCCGCCGGTTCC                 CAGG AGT CCTG                 TCATGTCCGCAATCT  47 104
CXD78_RS00930  178836 ..  178868 +  -2.6  -3.92324   TGGCGGCGCCGCGTC     CAGCCCC-C-GCGCCG TAG CGCCTTGGCGGGGCTG     TTTACTATTACGCCC  56 9
CXD78_RS00935  179757 ..  179801 +  -8.3  -3.92324   GGGTTCGGCCTTCTC GTCGGCGTGGCTGGCGGCCAG CAC CATGCCCTCGGACACGCCGAA TTTCATCTTGCGCGG  70 135
        apbC  183468 ..  183485 +  -3.3  -3.14125   TGGTGGTCCGGCCCG             CCTGACG CATG CGTCGGA              TATTGCGTGTCTGCC  44 21
CXD78_RS00955 NONE
CXD78_RS00960  189075 ..  189087 +  -7.7  -3.37344   GCGGCGGCCGGCGGC                GGGTA GAA TACCC                TTCATTCAATCGAGG  59 49
CXD78_RS00965  189866 ..  189887 +  -6.5  -3.25823   GCTTTGCGTCTCCAC           GCCG-CCGAC CTC GTCGGGCTGC           TTCATGTAGCGGGAA  52 216
CXD78_RS00985  191702 ..  191730 +    -8  -5.24129   GTCCTACAATTCCCC        GAGGTCGGCCCG CTCGT CGGGCCGGTTGC        TTTTTTGTCACCAGC  95 76
CXD78_RS00990  194085 ..  194124 + -33.6  -3.65812   GCAGTAAATCCGACG  CGCCGCGCCGCGCCGCCC GAGG GGGCGGCCCGGCGCGGCG   TTGTCTTCGAGGGAG 100 34
CXD78_RS00995  195392 ..  195402 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS01000  196419 ..  196444 +  -4.7  -3.72481   TAGCCTGGCGGGCAC        GGCGCATGCGG GCAGGG CCGC--GCGCC         TATTGTTTTGGTAAA  55 38
CXD78_RS01005 NONE
CXD78_RS01010  198058 ..  198073 +    -6  -3.55444   AACAGGGGCGGATCG              GCGCCC ATCC GGACGC               TTTGCGGCATGGCGC  56 49
        gcvT  199551 ..  199574 +  -7.4  -3.97368   GGCTTCCGCGCGGCC          GTTGGC-CGCC GGA GGCGCGCAAAC          TTTCTCCATTCCCAC  68 47
        gcvH  200008 ..  200028 +  -8.1  -3.90744   CAACGGGCCGGCCCG            CGGGCCGGC CCC GCCTCCCCG            TTATTTCGAGAAAAC  68 48
        gcvP  202928 ..  202973 +    -9  -3.75665   GTGCGCGCTCATGGC GCATGACGAGGTGCCTGTCCCC CCAT GGGGACTGGCACCT-G-CAAGA TTTCATGGCGTCTGC  68 44
CXD78_RS01035 NONE
CXD78_RS01040  206458 ..  206494 +  -6.6  -4.26019   CTTCGGCCTGTGCCT   GTGCGCCGACCTGGTG CTGGCCA CGCCAG--CGGCGCGC   TTTTGCCTGTCGTTC  70 411
CXD78_RS01050  207665 ..  207700 +  -3.2  -3.56568   GTGGCCACTTGTGCC    GCAATGCGC-CAGCAGG GAA CTTGCTACGCGCATCGG    TTTGGCAGATCATTG  49 54
CXD78_RS01055  208572 ..  208583 +  -7.2  -3.60098   GGGCTTGCCGTTCAT                GCCG ACCA CGGC                 TTTGGCGTAGCCGGT  60 481
CXD78_RS01090  213384 ..  213398 +  -4.2  -3.72893   CAGGGTGCGCGTCAG               GCCG ATCAGCC CGGC               TTTGGTCGCCGAATA  55 352
        queC  223939 ..  223952 +  -4.5  -2.82623   GCATCAGGACGGTGT               CGCGCC ATT GGC-CG               TGCTTGTAGCCCACC  44 126
CXD78_RS01130  225470 ..  225504 +  -8.4  -2.84298   CCTCCAGGCATCGCC     GCGCGACTGAGCCTGG CGC CCGGCCTGCGTTGCGC     TAGTTGTGAACTGTC  54 16
CXD78_RS01145 NONE
CXD78_RS01150  228852 ..  228873 + -18.7  -3.41051   ACGACTTTGCTGTGC           CGGGCGCCC CTTG GGGCGCCCG            TTGTCCTACCCGTAG  93 80
CXD78_RS01155  230438 ..  230460 +    -4  -4.18018   CCACCGCCTTTTCCT           GCATGCCCTG CTG CAGCGCGTCC           TTTTCGCTGACGCCC  63 123
CXD78_RS01165  233219 ..  233238 +  -5.6   -4.7497   GGCCGGCGCAACCGG            GACAGCCT TGCG GGGCTGCC             TTTTTCATGGATGGG  81 64
CXD78_RS01170  234323 ..  234333 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 76
CXD78_RS01175  235313 ..  235358 + -13.5  -3.14132   CAACCTGGACGAATA CAACCTATTGACAGTTCACAG CTAG CTGTGATGTCTCAATAGGTTG TTCATCCAGGCCGGA  72 1
CXD78_RS01180  236540 ..  236574 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS01200  239867 ..  239905 +  -7.3  -3.14229   AGGCGGCGCTCGAAG  GCGCCGACGGCGCCC-TGC AGG GCATGGGCCCGGGCG-CGC  TGTTCATCAACATGT  52 315
CXD78_RS01220  245044 ..  245062 + -11.6  -3.04144   ATCATCCATCCCACG             GCGCCGGC GGC GCCGGCCC             TGTTCGCGCTGGCCG  65 367
CXD78_RS01230  247065 ..  247112 + -10.4  -3.01712   AAGGCAATCTGCAGC CCTGACCAGGGGAGCCGCTGCCC TCA GCGCAGCGGCTCGA-TGGCCTGG TCTTCCAGCGCGGCC  60 21
CXD78_RS01255  251702 ..  251731 + -23.7  -3.18264   TCATGGCGTATGACA       GGGTGCCTGTCCC CGCG GGGACAGGCACCC        TTGCTCAGTCGGGCA 100 97
CXD78_RS01270  255335 ..  255364 + -23.7  -2.62616   CGACACCCGCGGCAA       GGGTGCCTGTCCC AGCC GGGACAGGCACCC        TGCTGTACGCCATCG 100 72
        fumC  258830 ..  258842 +  -4.7  -2.52464   GCGCGCCGCTAGAGC                GGCGC CGG GCGCG                TCAGTTGGGCGCGCC  42 29
CXD78_RS01295  260971 ..  260986 + -11.8   -5.4505   CCGTGCACGCCGAAA              GCGCCC CGCG GGGCGC               TTTTTTCTTGCGCGC 100 54
         ggt  264156 ..  264175 +  -5.6  -4.36914   CGCCAGGAAGATCGG            CCCGGCGCC GGT GG-GCAGGG            TTTTATACGGCGCGA  69 414
CXD78_RS01325  267990 ..  268007 + -14.1  -3.84451   GTCGAACCAGGAAAA             CGCCGCC GTCA GGCGGCG              TTTGCGTTTGCGCAA  83 441
CXD78_RS01335 NONE
CXD78_RS01340 NONE
        cydB NONE
        cydX NONE
        cydD NONE
        cydC  275100 ..  275137 +  -2.7  -2.71041   AGGCCGGCTGCACCG   CGCCGCGCCCATGT GACTGGCCTAA GCATCGGCGC-GCG   GTTATAGTTCGCCTT  40 10
CXD78_RS01365  275858 ..  275884 +  -8.7  -2.84812   CCCAATCGGGCAGCA        CGCG-CACCAGG CCTG CCTGATGGCGCG         TGTCATGCTGTCGCT  54 157
CXD78_RS01375  277289 ..  277330 +  -7.9  -4.18488   CGGCCGGACACTGTG GGCAGTGCTTCGCGCGCAGC ATG GCTGCGCCAGGCGCA-TGTC TTTCTTGCCATCCGT  74 167
CXD78_RS01395 NONE
CXD78_RS01400  280221 ..  280233 +  -3.3  -3.34517   TGCATTGTAGTGAAA                CTTCG CGC CGCAG                TCTTTCGGACAGGCT  46 518
        mscL  285490 ..  285502 +  -6.2  -3.63569   CAGGCCCAGCACGCG                CGCC AGCTG GGCG                TTGTTGCCCCATTGC  57 479
CXD78_RS01445  287193 ..  287227 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS01475  293564 ..  293590 + -12.3  -2.58544   CAGCACCGCCAGCTC        GGCCGCGGCCAC GGCG GTG-CCGCGGTC         ATTGTGCGGGTGCAC  62 285
CXD78_RS01485  295207 ..  295250 +  -8.1  -3.33814   CGGCGCGGCGCGAGC CGCCGG-CCTGAGGCGCCGGCG GGG CGTCG-TGCC-CGGATCCGGCG TATTATCTAGCGTTT  56 15
CXD78_RS01490  297305 ..  297331 + -11.5  -2.74488   TGTCCTGATTCACAG        GCCCGCG-CGGC CAGC GCCGGCGCGCGC         TGATTCGCGTCGTTG  62 176
CXD78_RS01500  299846 ..  299865 +  -7.8  -3.35679   TGATGCCCAGCTCCA            GCCCGATC AGGT GATAGGGC             TTGTACATGGCCGAA  59 391
CXD78_RS01525  304390 ..  304421 + -10.1  -3.05384   TCCACCTTGAGCAGC      GGCAGCCGGCCCAC GTCCA GCGGGTC-GCTGCC      TTCGGTGCGCAGCAG  59 344
CXD78_RS01545 NONE
CXD78_RS01550 NONE
CXD78_RS01555 NONE
CXD78_RS01560 NONE
CXD78_RS01565  311398 ..  311425 +  -9.1  -4.07568   TCCCGAAGTCTTCCT        TC-CTGCGCCGG CCTGT CCGGCGCAGCGC        TTTTGGGGACGGCAC  75 56
CXD78_RS01580 NONE
CXD78_RS01585 NONE
CXD78_RS01590 NONE
CXD78_RS01595 NONE
CXD78_RS01600  319629 ..  319647 +  -3.1   -3.4247   ATCTTGGCGTGCGTC            TG-GCGGG CGCG CTCGCTCA             TGTTGTTGACGTTCT  47 336
CXD78_RS01625 NONE
CXD78_RS01630 NONE
        ruvX NONE
CXD78_RS01640 NONE
CXD78_RS01645  327621 ..  327635 +  -2.7  -2.82516   CAGCCGCAGCGTGCA               CACGC CGTTC GCGGG               TATGATGCTGCCCGG  41 64
CXD78_RS01650  328441 ..  328477 + -16.4  -3.06831   TCGCCGGCGAGCTGT    AGCCGGCCCGGGCGGC GCGTG GCCGCCCGCGGCGGCG    TTCAGTCGCCGTTGG  79 24
CXD78_RS01670  332768 ..  332792 +   -15  -3.16492   TCATCCTCCGGTTGC         CGCCGCGCGGG CCGT CCCGC-CGGCG          TGTTGCTGGCTATCC  76 408
CXD78_RS01715 NONE
CXD78_RS01720 NONE
CXD78_RS01725  341910 ..  341932 +    -9  -2.71681   CGCGCAGCAGCCGGT           CGCCGGCGGC ATG GCCGTGGGTG           TCATTGACCGACTTG  52 361
CXD78_RS01750  345623 ..  345633 +  -2.4  -2.82519   CCAGCGTGTCGCACC                 AGCG CGC CGCC                 TGATTGATGTCATGC  39 190
CXD78_RS01795 NONE
CXD78_RS01800 NONE
CXD78_RS01805 NONE
CXD78_RS01810  356138 ..  356172 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS01830  360346 ..  360370 +  -7.8  -4.96388   CTGAAGCGGCGTCGC          GCCCGGGG TGCGGGTTT TCCCGGGC          TTTTATTTAGTGCTT  86 37
CXD78_RS01835 NONE
CXD78_RS01840 NONE
CXD78_RS01845  363200 ..  363216 +  -3.6  -2.62157   CAAGAAGTAGACGCA              CCCTGG AACGG CCATGG              CTTATCGCATTCATC  40 31
CXD78_RS01850  364267 ..  364294 + -15.6  -2.56596   TGCCCGGGGTGCCGG        GGTGCCTGTCCC AGCG GGGACAGGCACA         TGGATTCCTGCGGGG  74 69
CXD78_RS01855  365247 ..  365275 + -10.1  -4.11216   GCAACAAGCGGCGGG        GTTTGCCGGCGCG GCT CGCGGCGGCGCGC        TTTTCGGCATGCCGC  78 94
CXD78_RS01860  366864 ..  366880 +  -5.1  -3.78034   CCCGGTGGCCAGGGC              GCTGG ATACGTC CCAGC              TTCTTGATGTCGATG  58 494
CXD78_RS01875  369111 ..  369140 +  -4.1  -4.29738   ACATAGTTGACGTAG       TTGCCGGCGCCGT GGCC GTGGCGCACGCAG        TTTTCGTGGATATCG  67 144
CXD78_RS01890  372488 ..  372517 +  -2.7   -4.8622   AGGAGCTCGTCCCCA       CGGGGACTGGCTCC CGA GGGATCAG-CCCAG       TTTTTCCTTCAGCAG  77 118
CXD78_RS01910  377143 ..  377171 +  -4.5  -3.35679   GGCGCGGCCCGCGAA       GCAGCTGCGGGC AGGCAG GCCCG-GGCTGA        TTATCCATGCAACGA  51 79
        mreC NONE
        mreD  378601 ..  378626 +  -3.9  -3.09492   GACGACGTCGAATCT         TCCG-CCGTCTG ATC CGGGCGGGCGCA         TGTTCGAATTCAAGA  45 14
        mrdA NONE
        rodA  382182 ..  382229 +  -4.6  -3.61715   CCCTGCGCATCGATC AGCGCGC-CGTCGGGGGCCGG CTCGCCC CTGGCCGCCAGCACGCGCGCC TTGTTGACCGCGATC  54 496
CXD78_RS01960  388305 ..  388343 + -11.9  -4.42788   TGGTGGCCCAGAACT  TCACCA-GCACGACCTTGC CGC GCA-GGTCCTGCATGGTGA  TTTTCTGGCCTTCGA  88 498
        rsmI NONE
CXD78_RS01990  392077 ..  392111 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS02000 NONE
CXD78_RS02005 NONE
CXD78_RS02010  395369 ..  395400 + -15.9  -4.25104   GGCTGAGCGCCGGCC      CGGGTGCCTGTCC CCGCGC GGACAGGCACCGG       TTTTCCTGCGGGGAC  95 35
        trxB  402144 ..  402154 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS02045  403435 ..  403456 +  -8.7  -3.18582   GCGCCACCAGGCCCA           CCGCCTGCGT ATC GCGCAG-CGG           TTGGTAGCTGAGCTG  56 269
CXD78_RS02105 NONE
CXD78_RS02110  416059 ..  416073 +  -2.7  -2.62184   TGACGCCAGGGAACT               GGCGG GCACG CCGCA               TGGTCTGAGCAGAAG  39 38
CXD78_RS02115  417472 ..  417482 +  -5.4  -3.37533   AGAAGAACGCGTGCA                 GGAA GCG TTCC                 TTGATGGTTTTGGGG  49 438
CXD78_RS02130  418876 ..  418931 +  -9.8  -3.13403   CCAGCACCAGCCAGA GGC-T--GCGCCGC-GCGTCGGCAAAGCG CGC CGCCTGGCCG-CGCAGCGGCGCGTACGCC TCTTCGTCGGCCGCC  60 53
CXD78_RS02145  422135 ..  422145 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 54
CXD78_RS02150  423274 ..  423311 + -10.6  -3.53224   GCCGGTCATGGAGCA  GCC--GGCCAGGCGC-ACG CGC CGTTGCGCCCGGCCACGGC  TTTCGCGCAGCGCTA  70 123
        gltS  424571 ..  424582 +  -4.4  -3.16881   GCCGTTCGTGGGAGG                CATG TGAC CATG                 TTCATCCGCTGGCTC  47 19
CXD78_RS02160  426515 ..  426529 +  -2.1  -3.14931   GATCACGATGCCCGC              GCC-TC CCTT GATGGC               TTCGTCCAGGCTGGC  43 455
CXD78_RS02190  432485 ..  432497 +  -6.9  -3.29144   GAACACCAGGGCCTT                GGGCG CGA TGCCC                TTGTGCAGCAGGTCG  52 187
CXD78_RS02215  436059 ..  436072 +  -4.5  -3.53733   AGGCCTGAACAGCGC               CCGGT GATC ACTGG                TGTTTATCACCTCCG  52 33
CXD78_RS02220  438274 ..  438289 +  -6.8  -3.03124   CGGTACGCCGAACTG              CTTGCG CGTG CGCAGG               TATTCCGCCGTCAGC  48 408
CXD78_RS02260  446697 ..  446755 +  -7.5  -2.70932   GCTGCATGAAGGCCT CCAGCACGCGACGCGGCCTGGGCACGGGG ATCCA CGCCATGCCCAGGC-GCAT-G-G-GCTGG TGCTTGCCGGCCAGG  49 189
CXD78_RS02280  451938 ..  451948 +  -2.4  -3.17075   GCGGGACGGCCATGC                 ACGG CGC CCGA                 TTGCGTTGCCCACCA  42 42
CXD78_RS02285  452983 ..  452996 +  -3.7  -2.56596   AACCATCGCCAACGT               CGCCG ACAT CAGCG                TCGATTGATCGACAC  40 4
CXD78_RS02290  454218 ..  454230 +  -4.7  -4.20696   GGGACAGCCTCCCTG                ACCGG CCG CCGGC                TTTTCCCCTTACTCC  66 202
CXD78_RS02300  456951 ..  456965 +  -2.1  -3.17075   CAATAAAGCACCTGG              C-AGGC AAAG GCCTCG               TTGAGTTCCCACAGA  43 267
CXD78_RS02315 NONE
CXD78_RS02320 NONE
CXD78_RS02325 NONE
CXD78_RS02330 NONE
CXD78_RS02335 NONE
CXD78_RS02340  469488 ..  469498 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS02345  470481 ..  470520 +  -9.4   -3.5361   CCTGGACGAATACAA  CCTATTGACAGTTCACAG CTAG CTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD78_RS02350  471627 ..  471658 + -12.2  -3.03338   TCAGTTCGAAGGTGC      GCAGGCGGGCCAGG CGCG CCTGCTCCTCCTGC       TGTTCGCGGACTTCT  67 101
CXD78_RS02360  473576 ..  473602 + -11.5  -3.58231   GACCCCGCCTTCGCG         GCGGGCGTTCG TGCGC CGGGCGTCCGC         TTGTGTCCATTCTTT  72 53
CXD78_RS02365  474723 ..  474733 +  -2.4  -3.14344   CGATCTGTGATGCGC                 GGGC GAT GACC                 TTGCTCAAGGACCTG  42 31
        prmC NONE
        grxD NONE
CXD78_RS02380  476496 ..  476522 + -22.4  -3.64703   CGCCTGCCTGTACCT         GAAGCCTGCCCC GAT GGGGCAGGCTTC         TTTGCGTACGGCCGC 100 53
CXD78_RS02385 NONE
CXD78_RS02390 NONE
CXD78_RS02395 NONE
CXD78_RS02400  482470 ..  482485 +  -3.2  -3.17685   GGGGAGTTTGTCGAT              GGAGTT CACT AACACC               TTCCATGTGTCCTTG  44 14
CXD78_RS02405  482992 ..  483040 +  -7.9  -3.14132   CGCGGCGCCTGTAGC CGCGGCC-GCGCCCGCGGGCAG CGTGGT CAGCCCGGATGCGCAGGCTGTG TTGCTGCAGGCGCAG  54 130
CXD78_RS02410  483280 ..  483304 +  -7.8  -2.91582   TTCCGATACGCGAGG         CGCCTG-TCCC GCAT GGGAACTGGCG          TCTGTCCGTGCAGTG  52 61
CXD78_RS02435  488444 ..  488487 +  -9.5  -3.44222   CGGTAGGGCGGGGTT CGGTGTGGGTGCCAGTCCCC GCAAG GGGGACAGGCA-CCGTGGCG TTACTTGCTGCTTTG  63 35
CXD78_RS02480  495905 ..  495935 +  -8.2  -3.53012   CTTATCCCTGATCCC      GGCGCTGGCC-GC CATGGC GCTGGCAGGCGCC       TTTCCCGCGCCGAGC  62 194
CXD78_RS02490  498985 ..  499001 + -10.8  -2.73875   GAAGGTCCTGACCGG              CGCGCG GGTGG CGCGCG              TGGTGTTCCAGAACC  60 372
CXD78_RS02500  501374 ..  501391 +  -8.3  -3.90112   GACAGGGCAGGGCCG             CGCCGCC GCCA GGCGGCC              TTTCCTTGAAAAACC  70 41
CXD78_RS02505 NONE
CXD78_RS02510 NONE
        aspS  504385 ..  504417 +  -9.8  -3.64703   GCCAGCGGCCGGAAT     CGGGC-AGGCCGGGC AATG GCGTGGCTTCGCCCG      TTTCGATAACGCGCC  70 81
CXD78_RS02520 NONE
        clsB  506590 ..  506602 +  -6.2  -3.14132   CGCCGGCCAGGATGC                GCGG CGTCA CCGC                TTCGTCCAGGAACCA  50 111
CXD78_RS02550  511554 ..  511597 +  -8.1  -3.18199   CGAACCGCTGCAGTA AAC-C-G-CGGCGTCCGCCGGC CTC GCCGGCGGACGCTGTCCGCGCC TTGCCTTGCGCCTTA  54 25
CXD78_RS02555  512962 ..  512986 + -10.7  -2.71011   ACGCCGCCTGAAGCG         CGGCGGCCGC CAGCCC GCG-CCGCCG          TGCTTCAGCCGGCGT  60 30
CXD78_RS02565  515014 ..  515044 + -10.3  -3.43446   GGGGCTGGGGCAGCA       GGCCATGCGCGCG CGCAA CCCGCGCCTGGTC       TATTGTTCGGTATCG  65 374
CXD78_RS02575  516753 ..  516771 +  -8.1  -3.47227   CGCGTCGGACAGGCC            GGCGC-CG ATGC CGCGCGCC             TTGTCGTCCTTGCCG  58 209
CXD78_RS02635 NONE
CXD78_RS02640  529460 ..  529487 +  -7.6  -3.22884   GCCCCCTTACCGGAA        GTC-CGGCGCGCG CTT CTCGCGCAGCGAC        TTGATGCCTTCGTGC  56 114
CXD78_RS02650 NONE
CXD78_RS02655  531711 ..  531742 + -13.1  -4.20516   CTCGCGGCGCCGCCG      CGTTGCGTCTGGCC TGTCT GGC-AGACGCGACG      TTTCTTCCGTCCCCC  91 149
CXD78_RS02665  534595 ..  534626 + -17.2  -3.53012   TGGCCCAACCTATCT      GACCGGCCGGGCCG GCGA CGGCCGGACCGGTC       TTTCGAAGACCACCA  89 24
CXD78_RS02670 NONE
CXD78_RS02675 NONE
CXD78_RS02680 NONE
CXD78_RS02685 NONE
CXD78_RS02690  540373 ..  540400 + -21.4  -3.62597   TGCACCAAGGGCGTG        GGTGCCTGTCCC CGTG GGGACAGGCACC         TTGTTCCCCCCTCCG 100 56
CXD78_RS02770  557519 ..  557543 +    -7  -3.01791   GAACAGGTTGAAGTA          GCTGGCCGCG TCCAT CGCCGCCACC          TGTTCGGCCGGCGAT  51 234
CXD78_RS02785 NONE
        folB NONE
        ttcA  563634 ..  563644 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS02805  564774 ..  564793 +  -3.4  -3.30124   CGTTCACATAACCCA            GGTGCGGC GTAA GCAGCACG             TTGTCCAGCGTGCGC  47 151
CXD78_RS02835 NONE
CXD78_RS02840  571106 ..  571131 +  -6.7   -4.7497   GAAGTGCAGCGCCAA         GCCCGGAACCCG TAA CTGGA-CCGGGC         TTTTTGCTGCATGCC  84 212
CXD78_RS02845 NONE
CXD78_RS02850 NONE
        trpD NONE
        trpC  575187 ..  575219 + -12.6   -3.8186   CCGGCCTCAGCGGCC     GCTGCCG-CGCGCCG GCGC CGGCGCGCCGCCCGC      TTCTTCCTTGCGATG  81 55
CXD78_RS02875  579051 ..  579083 +    -9  -3.04322   GGGCGGTCTGGAACA      TGACGCTGCGCGCC TGCTC GGCGCGCATGGCCA      TCTTGGCCAGTTGCC  57 46
CXD78_RS02885  581243 ..  581284 + -10.1  -2.78463   ACAGCACCAGCGATT CGATGTC-GCTGCCCACCTG GGT CAGGTCGGCGGCCGTCATGG TGTGGTCCACGCGCT  56 113
CXD78_RS02920  587498 ..  587533 +   -19  -3.14132   GCGTGCTGGCGTATG    ACGGGGTGCCTGTCCC CGCT GGGACAGGCACCCGGA     TTCCTGCGGGAAGAG  90 76
CXD78_RS02935 NONE
CXD78_RS02940  591943 ..  591961 + -17.4   -5.1971   CACCTGTTTTCTCAT             GGCCGCGC CCA GCGCGGCC             TTTTTGCTTTTTCCT 100 202
CXD78_RS02965  601207 ..  601226 + -12.8  -5.60993   TTACAGGTAAAAAAA            CCGCTGGC CCTT GCCGGCGG             TTTTTTTATGCGCGG 100 51
CXD78_RS02975 NONE
CXD78_RS02980  605031 ..  605087 + -16.4  -2.80398   AGGGACGTTGCGCGC CGGCGTCCCG-TCCCGGGTGCGGCGCC TGGC GGCGCCGCACCCCGTATCGAGTTGCCA TGCTTGCATTCATTC  77 49
CXD78_RS02985  606441 ..  606490 +  -6.4  -3.73775   GCCGCGCCCGCCCAG CAGGCGCGCGCCGGCGCCGC CCATCTGGACAT GCGGCG-CGGCGT-CGTCGG TTTCGTCGGCGTCGG  59 171
CXD78_RS02995  607828 ..  607883 +  -2.5  -4.45175   ATACGTCTACACGAT GAACCGTGTCG-GCAAGATCGTGCCGC CCAA GCGGCA-GATCCTGCGCGACATCTCCC TTTCCTTTTTTCCTG  67 143
CXD78_RS03010  610333 ..  610348 + -11.8   -4.7497   CGCCTCAACGAGAAA              CCCGGC TTCG GCCGGG               TTTTTCGTGGCTGCC 100 66
CXD78_RS03015  611682 ..  611720 + -20.3  -3.25113   CGGGGACCAAGATTC   AGCGGGTGCCTGTCCCC CGTGC GGGGACAGGCACCCGAG   TATTCAGTTTTGCGG 100 68
CXD78_RS03040  617481 ..  617508 +  -9.2  -2.61582   GTATCCGCGCCCGCA        CCG-AGATCAAGC CGC GCTGGATCTTCGG        GTTCTGGGTGGGGTC  54 390
CXD78_RS03065  622777 ..  622788 +  -7.2  -3.95456   GCTAGCCAGTTCCCG                GGGC CGCG GCCC                 TTTCCTGTTCCGTTT  66 36
CXD78_RS03070  624110 ..  624152 + -14.1  -2.78384   CGGTTTCGAGCAACT GGCGCTCGTCGGGGCCGATG TGGC CGTCGGCCTTGGCC-GCGCC TATCATGGCCACCAG  67 302
CXD78_RS03080  625237 ..  625255 + -17.4   -5.1971   CACCAGTTTTCTCAT             GGCCGCGC CCA GCGCGGCC             TTTTTGCTTTTTCCT 100 214
CXD78_RS03105  630298 ..  630311 +  -2.3  -3.02166   GCCGACGATCCGGGC               CGGTG ATAA TGCCG                TACTTTCATTCCGGC  41 20
CXD78_RS03110  630979 ..  631013 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS03145 NONE
CXD78_RS03150  640139 ..  640151 +  -9.1  -3.02511   TGCCACAGCACCACG                TCGCC GTT GGCGA                TATTGAACGCCTCGC  55 368
CXD78_RS03185 NONE
CXD78_RS03190 NONE
CXD78_RS03195 NONE
CXD78_RS03200  648730 ..  648783 +  -4.3  -2.94144   GCGCGGGGGGTGCAC TGATGATCCGCCTGCCGCTGCGCCGC GCC GCGCTCCTGCCGCTGGCCG-TCATCG TCCTTTACCTGCCGG  44 23
CXD78_RS03205 NONE
CXD78_RS03210 NONE
CXD78_RS03215 NONE
CXD78_RS03220 NONE
CXD78_RS03225  654062 ..  654098 +  -7.9  -3.85698   CATCGATGACTTGCG   CGTGCTGCGCGCCGAC GCGCTG GCCGGC-CGCAGCGCC    TTTGTCAGCGGCGCC  66 110
CXD78_RS03235  655871 ..  655885 +  -3.4  -3.78934   GATACCCGCAACGAT               CCCCGG CTT TCGCGG               TTGTTCTCCAACCGC  56 202
CXD78_RS03245 NONE
CXD78_RS03250 NONE
CXD78_RS03275 NONE
CXD78_RS03280  666457 ..  666484 + -11.4  -4.50976   GTAGCGCCCCGGAAA        GCCCGCATAAACT TCA GGTTT-TGCGGGC        TTTTCTCATCTGGAC 100 63
CXD78_RS03285  667009 ..  667028 +    -7  -3.08679   CCGTAGCTGAAGAAC            GCGTCAGC GAAG GCGGGCGC             TATTGCATCGAGCCG  52 35
CXD78_RS03300  668085 ..  668095 +  -3.2  -3.41602   GGGTGATGGAATGAA                 TGCC CTG GGTA                 TTGTGATACCATGCA  48 27
CXD78_RS03305 NONE
CXD78_RS03310  669509 ..  669542 +  -4.6  -4.36411   CCAAGCTGATTACCG    TCCACAACCCGGTTGT CTGA GCA-CCGGGTCG-GGA     TTTTCGTCATTCATG  69 6
CXD78_RS03315 NONE
CXD78_RS03320 NONE
        ureC NONE
        ureE  672884 ..  672911 +  -6.8   -3.1372   GTTGCATCTGTCTTC        GCCGGCGCTGCC GATC GGCGGCTTCAGC         TATTCGTAGGGCCTG  52 62
CXD78_RS03335 NONE
        ureG  674275 ..  674315 +  -8.7  -3.58726   GCTTGCCGAAGATTC  CCGCGCACGCGCTTGCTCG GTG CGGGCCGGCGCGCCTGCCG  TTATATATAGAGGAC  62 99
CXD78_RS03385  687300 ..  687317 +  -9.1  -3.16564   CAGGGCAGGGCGTTG             TCGCGTC CGAT GACGCGG              TTGGTCGAATAGGCG  56 422
CXD78_RS03405  690088 ..  690111 + -16.8  -6.06723   CCTTTGGTGGATTTA          GCCCGAGATC GCAA GATCTCGGGC           TTTTTTTTTCGCCGC 100 465
CXD78_RS03410  691557 ..  691567 +  -6.8   -3.1506   CATACAATTCCGTAG                 CCGT CAC ACGG                 TTGATAGGGAGATTT  52 102
        tviB NONE
        tviC  693881 ..  693893 +  -4.8  -3.51232   CCATGCCCTGGTACA                CGCA ATTCC TGCG                TTGATTTGAAAGCCA  52 9
CXD78_RS03425 NONE
CXD78_RS03430 NONE
        asnB NONE
CXD78_RS03440 NONE
CXD78_RS03445 NONE
CXD78_RS03450  702074 ..  702101 +    -9  -2.60571   GCCAGGATCTCGGCC        TGCTGCGGGTCG GACT CGACCAGCCGCG         CTTCCTTGAGCGCTT  51 325
CXD78_RS03465 NONE
CXD78_RS03470 NONE
CXD78_RS03475  707848 ..  707873 +  -3.1  -3.54543   GGCTGGCGCTGCCGG         CGGGTGGCGCA TGAG TGCACGGCCTG          TTTCCGGCAATGGAT  49 12
CXD78_RS03480  709242 ..  709268 +  -5.9  -5.40072   ATTTGACATCGATTT        GACGCCCAA-CA GGTA TGCTTGCGCGTC         TTTTTTTGCAACGAG  95 87
CXD78_RS03485  711481 ..  711500 +  -7.1  -3.16564   CGCCCCAGGGCAGGT            CGAGCGGC TGCTT GCCGC-CG            TTGGTCAGCTCCAGC  53 285
CXD78_RS03500  715264 ..  715290 + -10.8  -3.18582   GGCCAGCAGCAGGAT         CAGCGCCGCG TTCAGCT CGCGGCTCTG         TTCGTCGCTGAGGTC  64 131
CXD78_RS03525 NONE
        lolB  721543 ..  721559 +  -6.5  -2.52896   CGGCGGTCTAGAATA              GGGGC ATCCCCA GCCCC              TCGCTTCCGCCGTGA  45 46
CXD78_RS03535 NONE
CXD78_RS03540  722566 ..  722608 +  -4.2  -5.79595   CCAATACATAAAAAA GCTGTTGAAC-G-CGCCCGT CAGAC ACTGGCTCCAGTTCAGCAGC TTTTTTGTTTTACGA 100 43
CXD78_RS03545  723685 ..  723709 + -12.8  -4.07885   GCGGCGCGCAAAAAC          CACGCAGCGC ATGTC GCGCCGCGTG          TTTTAACCGGCGATC  83 81
CXD78_RS03550  724420 ..  724458 + -24.8  -2.91695   CGTGCCCGACGTCCC   CGAAACCCTGCGCATGCG ATT TGCATGCGCAGGGTTTTG   TACTTTACAAATACG 100 79
CXD78_RS03555 NONE
CXD78_RS03560 NONE
        ychF  727087 ..  727105 +  -6.7  -3.05816   TGGTGGACAGATTGG             CCCGTTG TAAAT CAATGGG             TTGCATAAACAATAC  51 78
CXD78_RS03570  728483 ..  728510 + -16.4   -3.4285   GCGAAGTGGGTAGAA        CGGCCTTATCCT TTTC AGGATAGGGCCG         TTGTCCCTTGAGTGC  85 67
CXD78_RS03575 NONE
CXD78_RS03580 NONE
CXD78_RS03585 NONE
CXD78_RS03590 NONE
CXD78_RS03595  737258 ..  737271 +  -3.1  -2.79183   TGGTGACCTTTTCGG               CGAGAC GGA GTC-CG               TATGATACAGATAGC  40 7
CXD78_RS03600 NONE
CXD78_RS03605 NONE
CXD78_RS03610 NONE
CXD78_RS03615  739536 ..  739555 +  -6.4  -2.64243   ATTCCAGCACCCAGA            CGCGCAAT GCCG ATTCCGCG             TCATGTCCGATATGG  46 379
CXD78_RS03625 NONE
CXD78_RS03630  741414 ..  741428 +  -3.5  -3.72893   CGCGTTGCTCTGTCG               TGGTG ATGGG CACCG               TTTGCTCCCGACCTC  54 436
CXD78_RS03660  749546 ..  749573 + -10.5  -3.08679   GCCAAGCGCGGCGCC        GGCG-GCGCGCC GGCCG GGAGCGCTCGCC        TATTGCCTGGCCCCG  62 49
CXD78_RS03670  752126 ..  752153 + -13.4  -3.34398   GCGCAGTTCTTCATA        TCGGCTGCTGCC GCGC GGCAGCAGCAGG         TCTTTCCAGGCGGCA  74 237
CXD78_RS03700  757321 ..  757339 +  -4.6  -2.78596   CAGAAAATATATATA             CCTACA GAAAACA TGTAGG             TATAATCCGAACATC  43 85
CXD78_RS03705 NONE
CXD78_RS03710 NONE
CXD78_RS03715  761036 ..  761054 +    -3  -3.01001   CCCCTCGCATACAAC             GACAAGGA GAC TCCATGAC             TGTCATTTCCCGCTA  42 163
CXD78_RS03720  762070 ..  762110 +  -4.7   -3.2794   AACTAGGCTTGCGGG TGGCTACCGGG-TGCGGGCC GCAA GCCCCGCAGCCCGGC--CCA TTGGTGTCCATGGAC  49 35
        modA  763243 ..  763287 +  -9.2  -2.64616   CCCTGCTCAAGGCCT GGTCGCCGGCGCTGATCC TGCTGAAAT GGATCGGCGGCGCCTACC TCGTCTACCTGGGCA  54 302
CXD78_RS03735 NONE
CXD78_RS03740 NONE
CXD78_RS03745  765357 ..  765385 + -11.6  -3.30771   TCGACATCGGCTCGG        CCGGCCGCGTGG AAGTG CTGCGCGGCCCG        TTCTCGGCCCTGTAC  68 419
CXD78_RS03755  767683 ..  767694 +  -7.2  -5.30616   CAGTCCATGAACCAC                CGCC TTCC GGCG                 TTTTTATTTCCCTCG  95 113
CXD78_RS03760 NONE
CXD78_RS03765  768240 ..  768266 + -13.7  -3.09831   GTCGGTCTCGCCCCA        TGACGGCCGCCC CCCG GGGCGGCCG-CG         TCCTTTTGCGGTACG  73 51
CXD78_RS03775  769865 ..  769881 +  -5.7  -4.36914   AGGTCCGCTAAGCGG              GCGGGGC GCG GGCCTGC              TTTTGTGGGCGCGAC  72 30
        modA  770761 ..  770771 +  -2.4  -2.61264   CTGTAACCCCTTGCA                 GGAG TCC CGCC                 CTTGTCGCTGACCAG  38 35
        modB NONE
        modC  772943 ..  772966 +  -5.2  -3.72576   CCCTGCCCTGCGGCT          TG-GGCCCGGC GTA GCTGCGCCGCA          TTTCGTAAAGCCGCA  58 394
CXD78_RS03805  776445 ..  776466 +  -6.5  -2.87132   TTTCCCTTGTTCGGC           CTGGCGCAT GCAT ATGCGCCGC            TATATGCGGCAAGGA  48 257
CXD78_RS03810  778185 ..  778235 +  -5.1  -2.50034   CGGCTAAGGCCTGAC CCAACCGGACCAT-GCGGCGCGGG CCTG CCCGCGCCGCTGCGCTCCACCGGG CGTTTTCCCTTCATG  44 34
CXD78_RS03815  779498 ..  779515 +  -9.1  -3.14132   AGCGCCTGCAAGCGC             GCCTGGCG CAG CGCC-GGC             TTGATGCGCGCCGGA  56 68
CXD78_RS03830  783389 ..  783413 +  -8.4   -4.1899   GCGCTGAACACGCCA          ACCCGGGCGG CCCGT CCTCCCGGGG          TTTTCCCTAGGGTCG  76 34
CXD78_RS03835 NONE
CXD78_RS03840  786077 ..  786092 + -11.8  -5.18357   TGTCCATCCGGAAAA              GGCGGC CGCG GCCGCC               TTTTTTCATGCCTTC 100 50
CXD78_RS03845  787321 ..  787355 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 259
CXD78_RS03885 NONE
CXD78_RS03890  795828 ..  795846 +  -2.2  -3.57263   ACTGAAACGGCGGCC             ATCCCGGG CGT CCAGGGGC             TTTCCGCGTCGGAAT  48 36
CXD78_RS03895 NONE
CXD78_RS03900 NONE
        xerC  798896 ..  798931 +  -8.9  -2.80816   AGCGGTGCCGGACTT    CGC-CCTCGACGCCGG TGAAC TCGGCGTCGCGCTGCG    TGTACTCGATCAGGC  52 436
CXD78_RS03940  805706 ..  805732 +  -3.8  -3.93556   GCTCCGTCCCCTCTT         GAAGATGG AAATTCCGCCC CCATCTTC         TTTCGTTGCATCGAT  59 76
CXD78_RS03945  807150 ..  807166 + -10.1  -2.57795   AGCCAGGCGCGAATA              TTCGGGC CGC GCCCGGA              TCGATTCATAGTGGA  57 128
        dksA  807705 ..  807728 + -13.2  -5.07652   CCGAACGCATTACCA          GGGCTATGCT CCAC GGCATAGCCC           TTTTGTTTTCGGACC 100 76
        hslV NONE
        hslU  809679 ..  809704 + -11.9  -3.81027   CGGCAGCCAGGACCT         GGCC-CGCTACG TGC TGTAGCGCGGCC         TTTCCCTTACTTGGA  79 7
CXD78_RS03975  811040 ..  811050 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 43
CXD78_RS03980  812033 ..  812072 +  -9.4   -3.5361   CCTGGACGAATACAA  CCTATTGACAGTTCACAC CTAG GTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD78_RS03985  813442 ..  813459 + -11.3  -2.56596   TTGGCCCTGGCCAGG             CAGCGCA TCGA TGCGCTG              TCGCTTGATGCGCGC  59 364
CXD78_RS04020 NONE
        zapA  820624 ..  820638 +  -2.8  -2.95102   CTCGCGCGCAGTATT               CATGCA GTA TTCATG               GTTTGTCCCTGCCGT  42 55
        ssrS  820828 ..  820862 + -12.3  -3.05993   CAGGCGGGGCATCTA    TCC--AGGCAGGCCTGT ATC GCAGGCCTGCCTTCGGA    TGTCTCTCTCCCTCC  67 27
        ilvD NONE
CXD78_RS04055 NONE
        msrA  826626 ..  826657 + -10.8  -3.69256   GGATGCCTTCGCCGC      GGTACAGGTCCAGG TATT CCTGGATCTGCCCC       TTCTCTTCGGTGCCT  74 458
CXD78_RS04070  828266 ..  828280 +  -4.9  -3.56643   GCGACGAAGCCGGAA               CCGCG AATCA TGCGG               TTTGCAGGATCTCCG  52 289
CXD78_RS04075 NONE
CXD78_RS04080 NONE
CXD78_RS04085  830725 ..  830763 +  -5.3  -4.07568   ACCAGAAGGCGAGAG   AGCAACGCTTAGTGCTG CGAGT CAGTGTTAAGCGTTGGG   TTTTGGCCCGACAGC  64 72
CXD78_RS04090  833988 ..  833998 +  -6.8  -3.65314   AACCGACTGCCAGGC                 GCAC GCT GTGC                 TTCTTCCAAATTCAA  61 127
         rrf  834173 ..  834207 + -19.5  -4.59773   CAGGCTTTTATTGCT    CAAAACCCCGC-AGCC TCAC GGCTCGCGGGGTTTTG     TTTTTGGGGGTACGC 100 36
CXD78_RS04100  835150 ..  835170 +   -14  -4.54727   CGGTTCCGCTCGCAA            CGGCTGGC TTCGT GCCAGCCG            TTTTCGTTTGCAGGC 100 56
CXD78_RS04110 NONE
CXD78_RS04115  838406 ..  838460 +  -9.9  -3.56862   TCGCGCAGATCCCAG GCGCTCAGCCGTGCCGCG-CGCACC GGCTTGG GGCGCGCCGCGGCG-GGCTTGGCGG TTTCGGCGGGTTTCT  67 285
        rnpB  840534 ..  840554 + -19.7  -2.52464   TGCATTTTCATGACA            GCCGGCCGG AAT CCGGCCGGC            TGGCTTACGGCGCCC  93 41
        mraZ NONE
        rsmH NONE
        ftsL  842595 ..  842616 +  -6.5  -4.16016   AACCAGCCCGCCGGA           GGCGCCCAGT GAG GC-GGGTGCC           TTTCTTCGACAATCC  66 14
CXD78_RS04145 NONE
        murF NONE
CXD78_RS04155 NONE
CXD78_RS04160 NONE
        ftsW NONE
        murG NONE
CXD78_RS04175 NONE
CXD78_RS04180  854464 ..  854476 +  -3.3  -2.87132   CGGCGCGACAAGATT                GAACG GGA CGCTC                TGTGTGGAACGACGC  41 24
CXD78_RS04185 NONE
        ftsA  856632 ..  856643 +  -3.6  -3.55622   CCGTTGCGGACCACG                GTCG GCTT CGGC                 TTTGAGGCGATTCAC  51 127
        ftsZ  858088 ..  858099 +    -3  -3.63968   CCGGTTATGCCGGTG                TCTA TTGG TAGA                 TTTCCGGCTTTCGCA  53 210
CXD78_RS04200  859082 ..  859110 + -14.6  -4.57073   CGATATCGGTTTTCG        TCCTATGGCCGC GCTGA GCGGCCATAGGC        TTTTTGGCGGGGATG 100 52
CXD78_RS04210  860741 ..  860766 +  -5.4   -3.5394   CACGGCAGGCCGTTG         CGGTCCAGGT GCGTTA AACTGGATCG          TTTCCCGGCGGGTTT  54 77
        secA NONE
CXD78_RS04220  864476 ..  864489 +  -5.9  -4.19704   TGCGTGATCCATGGA               TGGCC GGCA GGCCG                TTTTCACTGACCTTA  70 161
CXD78_RS04225  865852 ..  865883 +  -8.6  -2.82635   GGCAATGGTGAAGCT      GCCGTGCGGGTCGGC GTA GGCGACGTGC-CGGC      TGTAGTGATCGGGAT  53 368
CXD78_RS04235  866985 ..  867007 +  -4.8  -2.57132   GCGCACGCGCGGCGC           GGGCGC TGCGGCATAAT GCGCCC           CTTATCGAAAAGGGC  42 10
CXD78_RS04240 NONE
CXD78_RS04245  868843 ..  868874 +  -4.3  -2.62396   GGCGTGCGCCGTGAA      CGGGTTTTGCCTG GCGGGG CATGCCAGGCCCG       TCATCTCGCAAGGTA  42 79
CXD78_RS04250  869767 ..  869785 +  -6.7  -4.37092   ATGCCCAGGCGGGTA            TCGG-CGC CGAT GCGGCCGA             TTTTCTGGAAACCAT  72 212
CXD78_RS04290  877523 ..  877536 +  -5.9  -3.20991   CTGGATCGCAGCGTG               GCCGG CCTG TCGGC                TTGAATTCGGTTGGA  51 8
        aroQ NONE
CXD78_RS04300 NONE
        accC  880345 ..  880395 +  -8.8  -2.55668   GTGCCCAGCTGGCAC CGCGACGACCCCGCCGTGCCGGGC CTGGT GCCCGACGCCGCGCG--CGACGCG ATTCATATCGAACTC  52 422
CXD78_RS04315 NONE
CXD78_RS04320 NONE
CXD78_RS04325  883663 ..  883681 + -13.1  -5.40072   CTGCTTCCGGCAAGA             CGCCCGC TTCAT GCGGGCG             TTTTTTTGCGGCGGC 100 48
CXD78_RS04330  884179 ..  884216 +  -4.8  -2.78384   CCTGCTGTCCCACCT  GGCCGCGATGGCAAGCGC CGTC GCGCT-GTCGCTG-GGCC   TGTACTGGGGCGCCG  43 44
CXD78_RS04335 NONE
CXD78_RS04340 NONE
CXD78_RS04345  886574 ..  886589 +    -6  -2.56838   AGTCCTATCTGATCC              GCCGGG AGTG CGCGGC               ATGTATTTCGATCTA  46 29
CXD78_RS04350  888037 ..  888049 + -10.5  -3.53091   CAGCGATTCCGGCGG                CGGCG TAG CGCCG                TTTCAGACGCCGAAT  67 18
CXD78_RS04380  897643 ..  897658 +  -3.3  -3.53012   GTAATCCCTATAATG              CGAAA CAAATA TTTCG               TTTGCGGCGAAAACA  49 155
CXD78_RS04385  898298 ..  898312 +  -5.6   -4.6951   GTCGGCAGTCCGGCA               CGCGGC GCT GTCGTG               TTTGTTTTGCGTGGT  77 185
CXD78_RS04390  898868 ..  898923 +  -3.3  -3.40522   TTGTCGCCAGCGGCG CGCCAT-TCGGGTA-AGGTGGCGGACTT CCC ACGTC-GCCGCCGCTACCCGCCATGTCG TTGTCGTCCGAAAGT  48 44
CXD78_RS04395  900363 ..  900385 + -11.2  -3.01712   TCAGGTGCTGGGCCG           CCAGCTCGGC GGG GGCGGGCTGG           TATTCGCCGCAGAAC  62 283
CXD78_RS04405  904276 ..  904310 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS04425  907724 ..  907734 +  -2.4  -3.78934   TCTTTCGCGATCCTC                 TGCG ATC CGCC                 TTATTGTGACCAACA  54 126
        dbpA  909108 ..  909122 +  -4.2  -3.28712   CGGCGGTTCCGCATG               CGCTTC CTG GAAGAG               TTCTGAGCGCGGCGG  47 5
CXD78_RS04435  910119 ..  910148 +   -12  -3.16564   CAGACCACGCTGCCG       CCGGCGGCGCGC ACCGCG GCGCACAGCCGG        TTGATGGGCTGCACG  68 521
        pmbA  915935 ..  915960 + -19.1  -3.02096   GCCGGCGCCGGCAGG         GTGCCTGTCCC CGTG GGGACAGGCAC          TGTCTCGTTCATGGC  90 51
CXD78_RS04475  917368 ..  917402 + -21.5  -3.53012   GCCGCCGTTTCGGTC    CGGCCAGGGGCCGCCC TTCG GGGCGGCCCCTG-CTG     TTTGGGCGCAACGCC 100 45
CXD78_RS04480 NONE
CXD78_RS04485  918481 ..  918510 + -20.9  -3.28791   AAGCGCTAATGTCCC       GCAAAAAGGCCGC GAAA GCGGCCTTTTTGC        TTATGGCGCCCCGGT 100 32
CXD78_RS04490 NONE
CXD78_RS04495  920514 ..  920533 +  -4.2  -2.80074   CTGGAATTTTGAGTC            CTGTCGCG GCTG CGCTATAG             TGATCTTATCCGGGC  41 29
        erpA  920997 ..  921022 + -18.3  -4.54727   CCGGTCCGCGATCGA         GGCCCTTCGGC ATGC GCCGGAGGGCC          TTTTCGTTTGGGCGC 100 53
CXD78_RS04520  926129 ..  926139 +  -4.6  -3.30124   GCGTGTTAAGTTGGT                 GGGG TAG CCTC                 TTATCGAGGGTCCCA  49 19
CXD78_RS04525  926854 ..  926875 +  -2.9  -4.62069   GGGCTTGCTTGAGCC           TGGCTCATG CCGA CTTGAGGCA            TTTTTGCGGTAGACG  71 52
CXD78_RS04530  928329 ..  928350 + -15.9  -5.30155   GCCCGCCGCCGGCAA           GACAGGCCC GCAA GGGCCTGTC            TTTTTTCATTGATGG 100 59
        nrdR  929240 ..  929264 +  -8.6  -2.90194   TGCACGATGGCGTCC         TGCACC-CGGT GCAC GCCGGGGTGCA          TGTGGTTGCGGCCGT  54 330
        ribD  931896 ..  931910 +  -9.2   -2.9006   GCGATCGGAACGCGG               TGCGCG TGG CGCGCG               TCTATCCGATGGGTT  56 98
CXD78_RS04570 NONE
CXD78_RS04575 NONE
CXD78_RS04580  936238 ..  936280 +  -2.5  -3.72576   TTCTCGCGCGAGAAC GCGATGAAGC-GCTGGCCGTC CAG GTCGGCCAGCCGCG-CGCAGC TTTGCTGCGCCAGCG  53 380
CXD78_RS04590  938179 ..  938213 +  -6.3  -3.65522   ATGCGCCGGCAATGG    CGCCGGCC-AC-CGCCG GAC CGACGAGCAGGCCGGTG    TTGTTGCCCTGCATG  57 138
CXD78_RS04600  940262 ..  940307 + -15.3  -3.05498   GCCTGCGCGAAGGCG CGGCGGCGCTGCGCGGCTGACG CCG CATCGGCCGCGCCG-GCCGGTG TATATATATCGCATG  77 6
CXD78_RS04610  941974 ..  942009 +   -19  -2.99319   GTCCCGACCCGTGGC    AAGGGGTGCCTGTCCC GGCG GGGACAGGCACCCCCC     TCTCTCTCCGACATT  90 93
CXD78_RS04615  943202 ..  943232 +  -7.4  -2.66969   GCCGCCCGGGAAACC       GCTGCCGCGGATCG CTG CGATCCGCGCTCCC       TCCGTTGTCTTGATA  50 175
CXD78_RS04620 NONE
CXD78_RS04625  944988 ..  945001 +  -4.5  -3.35813   GAAGCCCGGCCCGGA               GC-GCG AAG CGCAGC               TTGATTGAAATCAAG  51 4
        cyoA NONE
        cyoB NONE
        cyoC NONE
        cyoD  949126 ..  949159 + -28.3  -3.86015   CCGGCCTTGGTTCGC     CGACAACCCCCCGGG CTTG CCCGGGGGGTTGTCG      TTTGTGGCGGGGGTG 100 74
CXD78_RS04680 NONE
CXD78_RS04685 NONE
CXD78_RS04690 NONE
CXD78_RS04700  960318 ..  960334 +  -5.7  -3.44229   CTGGGTGCAATCCCG              GGGGTGC CGG GCGCGCC              TTGTCGTCGTAAGCT  53 54
CXD78_RS04705  961026 ..  961076 +  -2.3  -2.62184   CCAGGCCGGCCATGA CGTGCCAGCCGACGGGCGGACGCGC CAG GC-CGGC-GCCCATCGCCTGGGCCA TCATGTAGGCGCCGG  38 227
CXD78_RS04715 NONE
CXD78_RS04720 NONE
CXD78_RS04725 NONE
CXD78_RS04730  963879 ..  963889 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS04735  965363 ..  965378 +  -2.6  -3.61178   AGTTTTCACGGGGCA              TGGTTA TTCC TAACTA               TTTCAAATGACTCGG  50 495
CXD78_RS04745  966299 ..  966310 +  -3.6  -3.48395   CCAGCCTGCCTGCCC                TGCG TCAT CGCG                 TTCTATAGACGGAAT  49 6
        tldD  967830 ..  967847 +  -6.9   -5.9873   CCTGGCCTGGAAAAA             TCGCGTG GTGA CGCGCGG              TTTTTTTTGTGCTAG 100 66
        aroG  969401 ..  969421 +  -9.7  -2.52464   ACAAGGCGTAATCCT            TCATCGTGG CTG CCCCGATGA            TGGATTCGCGCCGGC  55 307
CXD78_RS04765  983365 ..  983387 + -19.2  -4.72272   CGCGGTGCCCGGCAA           GCCCACGCGA AGG TCGCGTGGGC           TTTTTCATGCCCGCC 100 57
CXD78_RS04770 NONE
        glcE NONE
CXD78_RS04780  987733 ..  987768 + -15.4  -3.68619   GGCGGCCGGTATCGA    CGCGCGTCGTGCCC GCCACCCA GGGCTTGACGCGCG     TTTCGATGAATTCCA  88 408
CXD78_RS04795  991656 ..  991693 + -20.5   -2.6563   GCGCGCGCCGTTAGG   CGGGCCCCGGCGCGGCGC CAT GCGCCGCACC-GGCCCCG   TGCCTTATTCCACGG  95 27
CXD78_RS04825 NONE
        mnmA  999003 ..  999035 + -11.1  -3.73775   GGAGGCGCGCCGGTC      TCGCGGTGGCCGCGG CCG CGGCCGCCACAGCGG      TTTCATAAACCTGGG  73 63
CXD78_RS04835  999921 ..  999976 + -24.2  -3.05596   CGGTCGGCGGCCAGG GTGGCCGGCAATGAAAAAGGCGGCTC ATGC GAGCCGCCTTTTTCATTGCACGCCGG TTCGGTCAGGCGGTC 100 62
CXD78_RS04845 NONE
CXD78_RS04850 1002687 .. 1002702 + -10.4  -5.96521   GCAAGGCAAAAAAAA              CCGGTC GCGC GACCGG               TTTTTTTTCGTTCGT 100 62
CXD78_RS04865 NONE
CXD78_RS04870 1006375 .. 1006409 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS04890 NONE
CXD78_RS04895 NONE
CXD78_RS04900 NONE
CXD78_RS04905 NONE
CXD78_RS04910 1012558 .. 1012575 +  -2.6  -2.66869   CGCGCCGGCGCGCCG             GCGCCA AGGAGA TGGCGG              TGAGTTCTTCCATAT  38 49
CXD78_RS04915 NONE
CXD78_RS04920 NONE
CXD78_RS04925 NONE
CXD78_RS04930 1015909 .. 1015950 + -14.5  -3.53012   CGGCGCGCCGCGTCC GCGCG-GCGCCGCC-GCTT CAGGAC AGGCCGGCGGCGCGCGTGC TTTCGGCCGACAAGC  81 43
CXD78_RS04945 NONE
CXD78_RS04950 NONE
CXD78_RS04955 NONE
CXD78_RS04960 NONE
CXD78_RS04970 1023235 .. 1023290 +  -7.2  -3.06696   CGCCGGCCTGGTGAT GGTCGAGGCCACCGCGGTCGAGCCGC GCGG GCGCATCAGCCACGGCTGCCTGGGCC TGTATTCCGACGCGA  51 205
CXD78_RS04995 1026834 .. 1026848 +  -3.5  -2.72344   GTCCAACTGCTGGAG              GC-CGC CCAT GCGCGC               TAATTCGAACTCGAA  41 8
CXD78_RS05000 NONE
CXD78_RS05005 1028577 .. 1028593 + -10.8  -3.31144   GCCTGAAGGTATCGA              GCGCCG GCGAG CGGCGC              TTGTAGCCCTCGGGC  66 35
CXD78_RS05020 1031592 .. 1031607 +  -2.5  -3.33696   TACAGATCAACTGAG              CC-GGC CGACC GCCTGG              TTCATTACCCAGGAG  44 27
CXD78_RS05025 1033005 .. 1033035 + -21.8  -3.23899   CGCGCCGCGCTGAGC       GGCGCCTGGCCGGC CGT GCCGGCCGGGCGGC       TTGCCTTACTTGAGC 100 28
CXD78_RS05035 1035075 .. 1035111 + -23.8  -4.26076   CCCGCCGCTCATCCC   GGCGCGGACGGCTTCCC TCGC GGGAGGCCG-CCGCGCC    TTTTCATGGCGGTGC 100 70
CXD78_RS05040 1035967 .. 1036000 +  -8.7  -3.18681   GGCGGGCGTAGTGCT     CGGC-GTTGCCGGCCT GCT GGGCCGGCGTCAGCAG     TTCGTCGGGTTCGCG  56 400
CXD78_RS05055 1039085 .. 1039127 + -12.6  -3.16564   GGCCAGGCTGATCAG CGCGGCGAACATGGTGCTGG TGT CCAGCGTGGTCGTCGCCGCG TTGATCAGGTAGCCC  68 140
CXD78_RS05090 1044899 .. 1044909 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 178
CXD78_RS05095 1045944 .. 1045958 +  -3.5  -2.53382   CGGGCGCCATCAGCC               TGCCT ATCGA GGGCA               TGACTTGCGCCTCGT  40 56
CXD78_RS05100 NONE
CXD78_RS05105 1049152 .. 1049173 + -12.9   -3.8591   CGTGTCGGTATCCGC           GGGCGCGGG CGTG CCCGCGCCG            TTATTCATTGTAGGA  83 52
CXD78_RS05110 1050558 .. 1050583 +  -3.1  -3.15544   CGAAGGCGATCTGCG         GCGTGGCGTAA TAGC TGGCGGCGCGC          TTGGTCAGCATCAGC  43 186
CXD78_RS05120 NONE
CXD78_RS05125 NONE
CXD78_RS05130 NONE
CXD78_RS05135 1055439 .. 1055449 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 154
CXD78_RS05140 1056916 .. 1056926 +  -8.2  -3.13899   CGAAATCGTACATGC                 CGCC CAG GGCG                 TATTCCTGCACGCTT  56 488
CXD78_RS05155 1060174 .. 1060208 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS05170 1062172 .. 1062185 +  -3.8  -3.53224   GGGTGCGCGTTCGCG               GCGA CTTTGA TCGC                TTTGACGGGCAAATG  51 314
CXD78_RS05180 1064087 .. 1064102 + -10.4  -2.89881   GCAATGCGCACAGGG              CTGCGG TTCG CCGCAG               TGTGTCGAATGAATA  59 243
CXD78_RS05190 1064509 .. 1064524 +  -6.1  -3.31461   GGTCCGGGTGTCTTT              GCGTG GCGAGA CACGC               TTGTCCCAGTGGGTG  53 55
CXD78_RS05195 1065751 .. 1065779 + -17.5  -4.11216   GGCTCTAGAAACCAA        GGCCTTGCAACTC GAT GCGTTGCAAGGCC        TTTTAAAAATGGCGG 100 127
CXD78_RS05220 1068288 .. 1068298 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 65
CXD78_RS05225 1069426 .. 1069482 +  -7.9  -3.63694   AAGAGCACGCTCAGG GCCACCGCGCCGGCGCCGCG-GGCG-GCC AGC GGCCCGACATGCA-CGCCGGCGTCG-GGC TTCTTGAAGCTGCCT  60 149
CXD78_RS05245 1073194 .. 1073218 +  -5.6  -3.91897   GGACAGCCTCGTCCT         GGCGCGCCAGC CGTC GC-GGCCCGTC          TTTATCCGTGCAACG  63 51
CXD78_RS05300 NONE
CXD78_RS05305 NONE
CXD78_RS05310 NONE
CXD78_RS05315 NONE
CXD78_RS05320 NONE
CXD78_RS05325 NONE
CXD78_RS05330 1088524 .. 1088551 +  -4.7  -4.07568   CGCCCCTGCCACCTC        GGCCATCGCCT GCACGA ACGCGGCGGCC         TTTTCCGCCACGCCG  63 253
CXD78_RS05375 NONE
CXD78_RS05380 NONE
CXD78_RS05385 1100371 .. 1100395 +  -3.4  -3.61517   GCACCATTGCAGCAC          CGCTTCGGCC GTCAG GGCCGGATCC          TTCTTCACGACGAAT  51 154
CXD78_RS05395 1103295 .. 1103331 +  -5.1  -3.13403   GAGCGTGCGCGTCAG  CGGC-CGC-GGCAGCAGC CGCA GC-GTCGCCAGCGAGCCG   TCTTCGTGCCGCACC  47 132
CXD78_RS05405 1105225 .. 1105251 +  -4.3    -3.445   GGAATCGTGAAGCTG         GCGACCTGAGC CGCGC GCTTAGGACAC         GTTTTTCCTGCATAA  51 17
CXD78_RS05410 NONE
        mgtE 1107322 .. 1107332 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 157
CXD78_RS05440 NONE
CXD78_RS05445 NONE
CXD78_RS05450 NONE
CXD78_RS05455 1116115 .. 1116131 +  -2.2  -3.13522   GCCCGTGACAGGTAA              GGCGAA ATGAA TTCTCC              TATTGATCCCGCGAT  42 176
CXD78_RS05460 1117083 .. 1117096 +  -2.3  -3.09933   TGGCGGGCTATCCCT               TGCCG GGGC CAGCA                TTGCATGGCTTGCCG  42 190
CXD78_RS05465 1117522 .. 1117536 +  -7.1  -2.70932   GCGGCCGAGTAACAG               GGCTC AGACA GAGCC               TGGTTGGCAGACCCA  48 29
        priB NONE
        rpsR NONE
CXD78_RS05480 1118748 .. 1118764 + -10.8  -5.75342   GCATGCCTGAAAAAA              GCCGGC CTGGT GCCGGC              TTTTTTTTCGAGGGC 100 48
CXD78_RS05485 NONE
CXD78_RS05490 1121183 .. 1121216 +  -2.9  -4.56597   CTGTCCGGCAAAGAT     CACCTGGGCCATCGG GATA CCGCTGGCCAGGCTC      TTTTTCGAGCCGCAG  71 160
CXD78_RS05520 1127259 .. 1127273 +  -2.1  -3.07935   TCAAGGATATGTTCC               GCAAG GACGG TTTGC               TTAAATGAATCCGAT  41 3
CXD78_RS05525 NONE
CXD78_RS05530 1130011 .. 1130048 + -28.5  -4.26076   CAGGCTGTTTGCAAG   GGCAACCCCCGGCCGCC GCAA GGCGCCCGGGGGTTGCC    TTTTCATGGCCGTCC 100 51
CXD78_RS05535 1130483 .. 1130507 + -17.1  -4.36914   GAACCGTGAAAAAAA          GCCCGCCGGCG CGA TGCTGGCGGGC          TTTTCTCGCGCAAGC 100 88
CXD78_RS05540 NONE
CXD78_RS05545 1132853 .. 1132870 +  -4.1  -2.52464   CAGCCACCGCTGGTA             CG-GGGTC AAA GACCTGCG             TGCCTTCGGGCACCG  40 130
        garL 1137506 .. 1137523 + -11.3   -4.0616   GCGCCAAAACAAAAA             GGATGCC CGCG GGCATCC              TTTCTGCTTGCCGTA  81 82
CXD78_RS05630 1146763 .. 1146784 +  -2.8  -3.25072   TGCTGGCGTTGCGGG           CAGCCGGG GGGCGG CGCGGCGG            TTCGGTTATGATGCG  46 109
CXD78_RS05635 NONE
CXD78_RS05640 1148911 .. 1148931 + -19.7  -3.75153   CACGTGCGATCGAGA            CGGCCCGGC CCT GCCGGGCCG            TTTGCATTGCAGCCA 100 47
CXD78_RS05645 1150403 .. 1150426 +  -6.6  -3.05343   GGCGTCCACGGAATA          GACGGACCAC GTTT GGCGTCCGTC           TGTTGGACATCTGCG  49 25
        pcaF 1151753 .. 1151768 + -10.4   -5.1925   CCGGCATGGCAAAAA              GGAGCC TTAG GGCTCC               TTTTTTGCGTTCTGG 100 54
        clpS 1153233 .. 1153251 +    -8  -4.19704   GACCTGATCCGCATC             GGGCGCGG TCG CCGCGTCG             TTTTGCCTGGCCTTG  74 34
CXD78_RS05670 NONE
        pbpC NONE
        clpA 1163042 .. 1163055 +  -4.5  -2.94747   ACTGATCGACTGACC               GTGTG GATC CACGC                TCTCTGATCGCCTGC  45 28
CXD78_RS05685 NONE
CXD78_RS05690 NONE
CXD78_RS05695 1166723 .. 1166751 +  -5.3  -3.16564   GACGCGAAAACAGAA        GGTTAACCTTTTT CGT ATACGGGTTAACC        TTAATACCGTACGCG  49 20
CXD78_RS05700 1170973 .. 1170983 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 292
CXD78_RS05705 NONE
CXD78_RS05710 1173167 .. 1173199 +   -17  -2.71712   TGATCGGCCTGTGCC     GGCGGCGCGG-GCTC CCCG GGGCGCTGCGCCGCC      ATTTGCCGCAGCCGC  80 38
CXD78_RS05715 NONE
CXD78_RS05720 NONE
CXD78_RS05725 NONE
CXD78_RS05730 1176841 .. 1176870 +  -3.3   -3.9461   TGGGCGAAGTCGAGG       CCTGAGCCAGTCC GCAC GCACGGGCGCCGG        TTCTTCTTGCGGAAC  58 21
CXD78_RS05740 1178924 .. 1178939 + -11.8  -5.86061   CGTTCGATTTTCAAG              CCGCCC CTCG GGGCGG               TTTTTTTTGGTGGGG 100 58
CXD78_RS05760 1184943 .. 1184955 +  -6.2  -4.15565   AGACCCATCTGGGCA                GCGG CCTGC CCGC                TTTTGCCATCGTCGG  66 211
CXD78_RS05770 1187832 .. 1187865 +  -5.8  -2.64616   ACGATGGCCAGCGCC     GCGCCGGCGATCTG CACCAC CAGCACGTCGCCGC      TCATCTGGCTGGCGC  45 443
        cyoB NONE
        cyoC NONE
        cyoD NONE
CXD78_RS05800 1193820 .. 1193852 + -14.1  -3.53012   GCGCCACGAGCTGCG     CGCGCGACGGCGCG GCTGAG CGCGCCGCC-CGCG      TTTGCGCCCGGGCGC  78 7
CXD78_RS05805 1194596 .. 1194629 +  -5.1   -4.1899   CATCCGCATCGACGG     CGGCATCACGCGCTCG GTC TGAGCGCG-GCCGCCC     TTTTCAATCCGATCC  69 4
        hutG 1195609 .. 1195643 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS05830 1200382 .. 1200403 +  -7.9  -3.78419   CGCGGGCAGGCACCA           GGCGTCCTG ATGA CGGGGTGCC            TTGTATCTTTCCTCC  66 16
CXD78_RS05835 1201747 .. 1201765 + -13.8  -3.21099   CGCCAGACAAGCAAA             CGGCCGCT CGC GGCGGCCG             TTCGTCATGGGGACA  73 173
CXD78_RS05850 1204239 .. 1204260 +  -2.8  -2.64616   CCTGCCCTGCGCGGC           GGGCCAGG CATGAA CCAGGGCC            TGCTGTACCTGGCGG  39 13
CXD78_RS05855 1205134 .. 1205163 + -23.7  -3.53224   GGTAACTACATACCC       GGGAGCCTGTCCC AGCG GGGACAGGCTCCC        TTTGCCGCGGCAGTC 100 36
CXD78_RS05870 1208188 .. 1208205 +  -2.5  -2.57344   ACCGTACCAGGCCGC             GCCGGCC TTCA GCCCGGG              ATTGTGCGCCGCGTA  38 356
        moaC NONE
CXD78_RS05890 NONE
CXD78_RS05895 NONE
        moaB NONE
CXD78_RS05905 1215414 .. 1215441 + -21.4  -2.70932   CCGAGGGACACCGCA        GGTGCCTGTCCC CACG GGGACAGGCACC         TCGTTCACCCCCCGA 100 138
CXD78_RS05920 1218825 .. 1218835 +  -5.4  -4.09243   GAGAATATGTTTTCT                 TCTC GTC GAGA                 TTTTCCGCGCCTATG  64 105
CXD78_RS05925 1219461 .. 1219478 +  -9.8  -4.65895   CGCGGCATGTAAAAA             CCCGGC GCGCAG GCCGGG              TTTTTACATGGAGCG  93 54
CXD78_RS05935 NONE
CXD78_RS05940 NONE
CXD78_RS05945 1224704 .. 1224733 +  -7.7  -3.28712   AGCGTGTAGGCGGCC       GGCTGCACCAGCGC GCC GCGC-GCGGCGGCC       TTGTGCGCCAGCGCG  55 297
         ggt NONE
CXD78_RS05980 1232140 .. 1232198 + -21.6  -4.65895   GGTGGGGGCGGCGGG CCGCCGCAGCGGCGGCCG-GCTGCCGCG ATCGG CGCGGC-GCGCGGGCGCCGCCGCGCCCG TTTTTCGGTGGCGAC 100 45
CXD78_RS05985 1233478 .. 1233525 + -11.9  -2.62184   CCCTGGCGGTGGGGG TGCCGTTCGGACTGGCCGCCGG CTATT TCGGCGGCTGGACCGA-CAGCG TCATCTCGCGCGCCA  61 344
CXD78_RS06010 NONE
CXD78_RS06015 1238204 .. 1238219 +  -2.4  -4.10657   CAGCACCAGGGCCTT              GTCGGG GATA CCCAGC               TTTTCGAGGATATCG  61 414
CXD78_RS06025 1239854 .. 1239889 +   -11  -3.97636   GCCCACGCCGACAAG    CAGGC-GCGCCGCAAGG CGG CCTGACGGCGCCGCCGG    TTTCTCCATTCCAGT  79 2
CXD78_RS06030 NONE
        paaI NONE
        paaJ 1241889 .. 1241907 +  -5.9  -3.37796   GGCGTTCGCGGTGGG             CAGCGGC ATCAC GCCGGTG             TTCTCGCTGGTGAAG  55 405
CXD78_RS06055 NONE
        paaN NONE
        paaB NONE
        paaI NONE
        paaF 1248038 .. 1248069 + -18.8  -3.55444   GGCGGGTTCGCAGGG      C-GCAACGCCGGCCG CCA TGGCCGGCGTTGCCG      TTTCAGGGGTAGACG  95 45
CXD78_RS06085 1250110 .. 1250144 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS06115 1258520 .. 1258541 + -14.5  -5.55769   TGCGCTCCCTACGAA           CGGCCTTTC GCGA GAAAGGCCG            TTTTTTATTGTCCCG 100 50
CXD78_RS06120 1266563 .. 1266597 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS06150 NONE
CXD78_RS06155 1272180 .. 1272203 +    -8  -3.27475   CCAGCACGTACCGGT          GCCCGTGCAG GTTG CGGCACTGGC           TGTTGTGGTCGGGGA  55 406
CXD78_RS06170 1273431 .. 1273468 +  -6.8  -3.53012   AACCAAGCGCCTGCG   CGGCAGGGTGCGCGAT GACTGA AGCGCGCGCCGGGCTG    TTTGCCCGCCGGCGC  58 4
CXD78_RS06175 NONE
CXD78_RS06180 1274919 .. 1274930 +  -7.2  -3.72576   CGCACACCGCGTAGC                CGCG CTCG CGCG                 TTTCCTGCAGCAGCA  64 326
CXD78_RS06190 NONE
CXD78_RS06195 1278022 .. 1278063 + -15.7  -2.52234   GCACGGCGCCGCCCA GCGCAATGCTGCCGGCGGC CAGC GCCGCCGCCATCCATGCGC  GTTCATGACGTTTGT  69 493
CXD78_RS06215 NONE
CXD78_RS06220 NONE
CXD78_RS06225 1283682 .. 1283735 +  -5.2  -3.86897   GCCGTTCTGGTCACG GGCGCGCTGTGGCCCTGTCGT-CCAT CGCC ATGCTGCGCCAGGCCCACGCCG-GCC TTTATGCCGCGTGCC  60 390
CXD78_RS06230 1284207 .. 1284258 +  -2.2  -4.59773   TCAGCCGCCAATACG GCGCGACAGCT-CGCGGGCGG-CCT CGACC AGGACCGGC-GCGTAGCCGTCCAGC TTTTTCAGCGTCACC  70 48
CXD78_RS06250 1289849 .. 1289865 + -10.8  -3.13403   GGTGCAGGACATCAT              CGCGCC CGACC GGCGCG              TCTTCGTGGGCACCG  64 138
CXD78_RS06260 NONE
CXD78_RS06265 NONE
CXD78_RS06270 1294083 .. 1294102 +  -3.4   -3.5764   CGTGTCGTGGAACAG            CCCGGACA TCAC TGCGCGGG             TTTCCCACTGGCGTT  51 510
CXD78_RS06290 1297629 .. 1297643 +  -2.7  -3.14881   CGACAGGCGCGGCGC               GCGCC CGACC GGAGC               TTCGTGACCCGATTC  44 4
CXD78_RS06295 NONE
CXD78_RS06300 1301440 .. 1301474 + -16.5  -2.53995   CTGCCCCCCGTATGA    CGGG-GTGCCTGTCCC CGCG GGGACAGGCACACCAG     TCAGTTCAGCTGGAT  77 61
CXD78_RS06315 1303104 .. 1303123 +  -4.8  -4.57073   GCGTAGAGTTGCTGC            GCGCGCGC ATGG GCGCGGCC             TTTTTCCACCAGATG  72 359
        guaB 1308844 .. 1308881 + -22.2  -4.86731   ATCACGCAATGCATC   GCGCACCGG-CAGAACC GGCCA GGTTCTGGCCGGTGCGC   TTTTATTTCCAACCG 100 58
CXD78_RS06340 NONE
CXD78_RS06345 1310779 .. 1310795 +  -3.7  -4.12902   AAGTCGGTGGATTGA              TAGCTGA ATT TCAGATA              TTTTACAAATAGTTG  61 39
CXD78_RS06350 1311094 .. 1311104 +  -6.8  -3.16564   AGTCCCGCAGGGTCT                 TCCG ACG CGGA                 TTGGTGACATGGGGC  52 8
CXD78_RS06355 1312660 .. 1312710 +  -5.2  -3.75332   CTGGTAGGCGAGCAG GTCCATGGCCAGTCTGGCTTCG TTGGTGT CGGCGGCGAGCTGGCCCTGGGC TTTGGCTTGGCGAAT  58 232
CXD78_RS06365 1314970 .. 1314992 +   -12  -3.58522   GCAAATCCGGGCTTG           CTGGCCGG GCTGTCG CCGGCCAG           TTTCGGCATCGTCAT  72 314
CXD78_RS06375 NONE
CXD78_RS06380 NONE
CXD78_RS06385 NONE
CXD78_RS06390 NONE
CXD78_RS06395 NONE
CXD78_RS06400 NONE
CXD78_RS06405 1323333 .. 1323354 +  -2.8  -2.74999   GGCCAGTCGGCGGCC           GCCGCGCC CGGGAT GACGCGGA            TCCTGTTGCGGGTTG  40 252
CXD78_RS06415 1325221 .. 1325234 +  -3.8  -3.64703   GGGCGCCAGCGAGGC               CAGC AGGGCG GCTG                TTTCGCTGGCCGCGA  54 440
CXD78_RS06430 1328719 .. 1328741 + -10.4  -2.81464   AACGCAATAGGACGG           CGGCGCGGGC AGG GGCCGCGCAG           TATCATGGCTGGTCG  59 119
CXD78_RS06435 NONE
CXD78_RS06440 1329880 .. 1329918 +  -8.6  -2.70932   CTAGGCCGCCGCAAG   GCGGGCGCAAGGCCTCGC GCG GCCAGTCCGTGCGCCACC   TGCTTGCCGGCAACC  52 37
CXD78_RS06445 1331158 .. 1331172 +  -3.4  -3.35073   GGGGACGGACCTGGA               GGCGCG CAG CACGTC               TTCCTTGCCCATGAT  47 204
CXD78_RS06455 1333296 .. 1333342 + -14.5  -3.36273   CGCTGCGCGCCAGCG CAACGCCGCGGCCGTCGATGGCG GCT TGC-AGC-ACGGCCGCGGAGTTG TTGATCTTCAGGCCG  79 298
CXD78_RS06465 1334856 .. 1334884 +  -2.4  -2.57931   CAGGCCGTGGACCAG       GGGCA-G-GCATGC TGA GCGTGCGCGTGGCC       ATTGTCGGCGGTGGC  38 11
CXD78_RS06470 NONE
CXD78_RS06475 1337064 .. 1337081 +  -5.5  -2.63596   CGACCAAGACTGAGT             CCGCGCGT CTG GC-CGCGG             TCCTGTCCAATCACC  44 28
CXD78_RS06480 1338729 .. 1338743 +  -9.2  -3.44146   GATGGCCTCGAGCAG               CGCCGT GCG GCGGCG               TTCGTTGTCGCGGCG  61 408
CXD78_RS06490 NONE
CXD78_RS06495 NONE
CXD78_RS06500 1342167 .. 1342179 +  -6.2  -3.31726   GGGGGGGGGGGGCGC                GCCG GTCCG CGGC                TGTTCTATAACGGCC  53 427
CXD78_RS06505 NONE
CXD78_RS06510 1344743 .. 1344764 +  -2.9  -2.94099   CGAGAAAACCGGCGG           GGCGCGC-TG AAC CATGTGGGCC           TATCTCGTCAGGCGA  41 16
CXD78_RS06515 NONE
CXD78_RS06520 NONE
CXD78_RS06525 1348171 .. 1348191 +    -6  -3.53012   CCGCGCGCGGGAGGC            GGCCGTGG CCTGA CAGCGGCC            TTTGCGGGGGGCGGC  56 13
CXD78_RS06530 1349388 .. 1349401 +  -3.7  -3.16647   TGCCCTGGGCAGCCG               GCCCG ATTC CTGGC                ATTTTCATGCCTGGA  45 85
CXD78_RS06535 NONE
CXD78_RS06540 1350343 .. 1350379 + -18.8  -2.70932   GCCGCCTATGGCCTG   GCG-GGCG-CGCGCTTGC GGG GCGAGCGCGGCGCCGCGC   TCGTTGACGCCGGCC  87 44
CXD78_RS06550 1352163 .. 1352177 +  -3.4  -3.57144   CGCGCTCGCGCAGCG               CCGCCG TCA CGCTGG               TTTCGGCCTGGAACC  51 498
CXD78_RS06560 1353753 .. 1353763 +  -2.4  -2.80816   CGAGAACACCTCGAC                 CCTG GCG CCGG                 TGTGCTACCTGCAGG  40 310
CXD78_RS06570 1354063 .. 1354078 +  -3.2  -4.00066   GCGACGCAATCGGCG              CGCTAT TGTT AAAGCG               TTTGTCAGTTGTCCA  58 98
CXD78_RS06575 1355240 .. 1355274 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 439
CXD78_RS06585 1356872 .. 1356909 +  -3.9  -3.56594   GGTGCCCATATAGTC   GGCGGCCGCGGCCTGGGG CAG CGGCGGGTTG-GGCCGGC   TTTGGGCGAATTTCA  51 491
CXD78_RS06595 1359242 .. 1359255 +  -8.1  -3.28712   CGACCAGGTTGCCCA               GCACG ATGC CGTGC                TTGTGGCCCAGGCCC  55 237
CXD78_RS06605 NONE
CXD78_RS06610 1361145 .. 1361163 +  -2.4   -2.8655   GAAAGCGATGATGCC             TTTCGCTT GAT AAGGGAGA             TCTACTATGCCTCGC  40 16
CXD78_RS06615 1361554 .. 1361584 + -16.2  -4.09685   TACATCGCGGATCGC       TGCAAACGGGGCTG TAA TGGCCCCGTTTGCG       TTTTGAAGGCTCAAA  95 50
CXD78_RS06620 NONE
CXD78_RS06625 NONE
CXD78_RS06630 1365395 .. 1365408 +  -2.3  -3.88137   CCGGACCCCGCCTCT               GCGGA GTGA TACGC                TTTGTCGGCAATTGT  54 17
CXD78_RS06635 1365908 .. 1365937 + -15.8  -4.41047   TACGGCAGGCCGCGA       CGCCGCCTGGTTC TTCGC GAACC-GGCGGCG       TTTTCCTTGGGCGCT 100 61
CXD78_RS06640 1366129 .. 1366163 +   -26  -3.45027   CCCGACCAGTAGTTC     CAAGGCCGTCAGTGAT CAC ATCACTGACGGCCTTG     TCTTTCGTGGGGACT 100 33
CXD78_RS06650 1368245 .. 1368278 + -15.9  -3.14564   AACTGGAGCTGTAGT     CCGCGCCGGGCTGCC CGTG GGCAGTCCGGCACGC      TTCCTCGGCCCGTGC  78 27
CXD78_RS06660 1369824 .. 1369847 +  -8.8  -2.58892   TGCCGGGGCGGGGCT          GTGCCGCC ATGCGCGA GGCGGCGC           TCAATTGATCTGCCT  52 263
CXD78_RS06665 1370184 .. 1370207 + -14.6   -5.0925   CAACCAGATCAAAAA          GGCTTGGCGA TTCA TCGCCAGGCC           TTTTTCGTTTTCGCA 100 35
CXD78_RS06670 1370991 .. 1371036 + -12.7  -3.05844   ATGTAGAACTGGATG CGCG-CG-ATACGGCCGCGCA CGTACT TGCGCGGCTGTATGCGGCGGG TCTTGAAGTCCACGA  66 360
CXD78_RS06680 1371879 .. 1371909 + -10.4  -4.86621   GCCGCACCGTGCGCA      GCCGCC-TGCCGC GATAGG GCGCCAAGGCGGC       TTTTTCATTGGGCGT 100 59
CXD78_RS06685 NONE
CXD78_RS06690 1372884 .. 1372900 +  -7.3  -3.20348   TTTGGGGTCGAATAA              TATGCGC ATT GCGTATA              TTCCGTATTCCTCCC  52 89
CXD78_RS06695 1374213 .. 1374271 +  -7.9  -4.07568   TTCCGTCTTCCACGG CCTGGACTGA-GCCGTATCGCGTGGCGC GCCA GCGCCACGCGAGCCCGCGTCAGACGCGC TTTTCCCCGCCCAGC  69 16
CXD78_RS06705 1375886 .. 1375906 +  -6.8  -3.40403   GCGGGCGGGCTGGTT           TCGC-CGCC CACC GGCGCGCGG            TTGTAGTGAAAGGGC  55 180
CXD78_RS06720 NONE
CXD78_RS06725 NONE
CXD78_RS06730 NONE
CXD78_RS06735 NONE
CXD78_RS06740 1382025 .. 1382035 +  -3.2  -3.05384   ATTGCCCTGTGGCGC                 TCGA CGG TCGG                 TTGAGTCCGCAGGGG  42 11
CXD78_RS06745 NONE
CXD78_RS06750 NONE
CXD78_RS06755 1385820 .. 1385834 +    -7  -5.15969   CTATGCGGGCTTGCT               GCCCCC CGA GGAGGC               TTTTTTGCCTTGGGG  93 161
        recA NONE
        recX 1391879 .. 1391925 +  -9.3  -3.33815   CGACTGAACGATGCC GCTTCGTGCGGGCGGCGGCGCGC GAT GCGGGC--CCGCCTGCCTGGGGC TTGCTTGCGGCCCGT  61 34
CXD78_RS06790 1395458 .. 1395478 +  -6.7  -3.40403   GGTCGGCCCGGGCCG            CGTCGCCGG CAA TCGGCTGCG            TTATACTCCCCAGGA  56 153
CXD78_RS06795 NONE
CXD78_RS06800 NONE
        sucD 1398241 .. 1398260 + -16.4  -5.78622   CCGCCTGTCCCAGGA            CGGCCCGC GATC GCGGGCCG             TTTTTTTTCGCATGC 100 57
CXD78_RS06810 1399202 .. 1399244 + -23.5  -5.07652   GCTGAACTACAATAG CGGGCTGTTCGGGCCCCGCC TTCA GGCGGGG-CTGACCAGCCCG TTTTCTTTTGGCCGC 100 47
CXD78_RS06815 1400125 .. 1400158 +  -5.9  -4.03413   GTTCGTGCTGGCCAT     CCTGGGGGTGGTGGC TTCG GTCATCGTCTCCAGC      TTTCTCTGACGCCCT  66 92
CXD78_RS06820 NONE
CXD78_RS06825 NONE
CXD78_RS06830 NONE
CXD78_RS06835 1404746 .. 1404763 +  -2.6  -4.23781   TCCGCCGGCCCGGCG             TCCGGC GACAAA GCCTGA              TTTCATTTTCATCAA  62 8
CXD78_RS06840 1405356 .. 1405397 + -23.8   -4.2231   GCCTGGGGCGGCCGG CGGCGCGGAAGCGA-CGGC AGGCA GCCGCTCGCATCCGCGCCG TTTTGCGTCATGCTT 100 53
CXD78_RS06845 NONE
CXD78_RS06850 1406401 .. 1406420 + -12.8  -5.07652   GCCGGCATGATGCAA            GCCCTCGG TCAT CCGGGGGC             TTTTCTTTTGCCGCG 100 50
CXD78_RS06855 NONE
CXD78_RS06860 1408306 .. 1408344 +   -11  -3.01712   GGGTCGCGGCGTTCA  TGGCGG-CCGCGGCGGCG CCGTC TGCC-CCGCGCACCGCCA  TCTTGGCGCGGCAGG  62 185
CXD78_RS06870 NONE
        cpaB NONE
CXD78_RS06880 NONE
CXD78_RS06885 1414082 .. 1414095 +  -8.1  -3.53012   GCTGATCCGCCGCAT               CGTCG CCAT CGACG                TTTGAGGAGCCGGGC  60 7
CXD78_RS06895 NONE
CXD78_RS06900 NONE
        folD 1417472 .. 1417486 +  -3.4  -3.75933   CGTGCGATCGGAGAA               ATCGCC GCC GGCGGA               TTTGCTCGCGTCTAT  55 187
CXD78_RS06925 NONE
CXD78_RS06930 NONE
CXD78_RS06935 1425213 .. 1425223 +  -6.8  -3.07816   CGTCGATATCGAACG                 GGAG CGT CTCC                 TTGGATAACTCGCAC  51 7
CXD78_RS06940 NONE
        purU NONE
CXD78_RS06950 NONE
CXD78_RS06955 NONE
CXD78_RS06960 1429995 .. 1430016 + -14.5   -5.1287   ATGCAAAAACAAAAA           GGCCCAAAC CGAA GTTTGGGCC            TTTTTTGAATCTGGA 100 53
CXD78_RS06970 1431392 .. 1431414 +  -9.8  -3.40403   CTTACAGGCCCAGTA           CGGCCTGCAT GTC GTACAGGCCG           TTGTCCTGGCGCGCC  65 76
CXD78_RS06985 1433329 .. 1433350 + -15.9  -6.10489   GCTCTACCAACCCTG           CCTCCAGGC GCAA GCCTGGAGG            TTTTTTTTTGCGGTT 100 48
        hrcA 1437113 .. 1437130 +  -5.5  -3.54382   GCCTGCGCGCGGGGC             GGCGCCT TGAG AGGTGTC              TTCGTGTTTCTTCGC  54 62
CXD78_RS07005 1438247 .. 1438264 +  -8.3  -2.52676   CTGTGGTTGAAGCGG             CGGGCGC GAGC GCGCCGG              TCCATTCCGCGAATG  51 50
CXD78_RS07010 1438575 .. 1438600 +  -3.8  -5.52384   GGGCGGCGACGCGCC         GTCCGGCGGC GTCATG GGAGCCGGGC          TTTTTTTCCTGGAAA  90 54
        grpE 1439220 .. 1439264 +  -5.6  -3.05384   GTCCGGCGCTGGTCG TGGTGTCCGCCGGCCAGGGCTG AAG CAGGCATGGCCGCCGC-C-CCA TTCGATCCCGCCGAG  47 3
CXD78_RS07020 1439660 .. 1439678 +    -3  -2.78725   AACTCCAGTTACTGG             GGGACTGA GTT TCAAACCC             TGATTCCTACCGTAT  40 55
        dnaK 1441663 .. 1441705 + -18.5  -3.27298   GGCCGAACGATGACG TGCGATACGCCCGGTAGCTG ATTC CAGCTACCGGGCGCG-CGCG TTGATGATTCAGAAC  93 42
        dnaJ 1442948 .. 1442977 + -22.3  -2.88249   TCATGGCGTAGAGCA       GTGTGCCTGTCCC AGCG GGGACAGGCACAC        TCTGTCGCGGATGTC 100 93
CXD78_RS07040 NONE
CXD78_RS07045 1447248 .. 1447279 +  -7.9  -3.85864   TGGGCCAGGCGTCGA      GCA-GCCGGCGCAG CCAGA CCGCGCCGGCCTCC      TTGTTGTAGTGCTCG  67 187
CXD78_RS07065 NONE
CXD78_RS07070 1451118 .. 1451146 + -16.7  -4.38712   CCAGTAAGCGGCGCC        GGGCAAGCCCCCG ATC CGGGGGCTTTTCC        TTTTCTAGCGCTCGG 100 34
CXD78_RS07080 1453070 .. 1453094 + -11.4  -5.02074   GCATCAGCCGAGAAA         CCCGC-GCCCC TATG GGGGTAGCGGG          TTTTTTGCCGAATGG 100 60
CXD78_RS07085 1454272 .. 1454289 +  -3.3  -2.74864   TGTGGGATTCCGTTT             CGGGTTG AGGC CGGTCCG              GTATTTGCTTCTACA  40 83
CXD78_RS07090 1455640 .. 1455650 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS07095 1457022 .. 1457044 +  -7.6  -3.17212   CGCGCAGGCGCGCCA           GCAGTTCGCC GAC GCCGAACGGC           TTGGTCAGGTAGTCG  53 393
CXD78_RS07130 NONE
CXD78_RS07135 1468051 .. 1468085 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS07165 NONE
        lolA 1475041 .. 1475061 +  -3.3  -3.05596   CCTGCGGGCCAAGGC           CGCCGCAT GGTGTA ATGCG-CG            TTGGATCCGCCCGTG  42 74
CXD78_RS07175 NONE
CXD78_RS07180 1477865 .. 1477882 + -11.3  -4.98531   CACGTGAACCAGAAA             CGGAACC CGCG GGTTCCG              TTTTTCATTTCGGCG 100 54
CXD78_RS07185 1478505 .. 1478522 + -14.1  -4.95957   GTGCCGCAAAAAAAG             GCCGCCC ATCC GGGCGGC              TTTTTCATTGATTTG 100 167
CXD78_RS07200 1479913 .. 1479926 +  -9.5  -3.28791   GCCAGGAAGGCTGAC               CGGCC CGCG GGCCG                TTATGCGCCAGCCGT  61 27
CXD78_RS07210 1481554 .. 1481575 +  -7.3  -2.78463   GGGAAGAACACCATC           TCGCGCGCCA TGC TGG-GCGTGA           TCTGCTGCAGCGCCT  49 352
CXD78_RS07265 1494689 .. 1494737 +  -6.6  -2.70932   CCGCCGCGGACAACG AGGAGCGG-TCCG-GCCCGGGC TGACCGC GCCCGGTCACGGATCCGTGCCA TCATTGCCGGCGGCG  47 3
CXD78_RS07270 1495617 .. 1495627 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS07275 NONE
        yaaA 1497432 .. 1497469 +  -3.4  -4.21812   CGCAAGCAGGCCTGA  CAGGACG-CGCG-ATGTC GGCA GGCTTACGCGTCTTCCTG   TTCTTTTCGCTCGGC  63 26
CXD78_RS07285 1499153 .. 1499167 +    -7  -3.72576   CGGCGTCGGCGCGCT               CGCCGG TCT CGGGCG               TTTCCTCGCCCGCCG  61 494
CXD78_RS07295 NONE
CXD78_RS07300 1502711 .. 1502745 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
        thrS NONE
CXD78_RS07330 1507999 .. 1508035 + -19.3  -3.05463   CAGGCTGATCCCATC    CCCGGCCCGGTTGCCCT CGA GGGGCGTCCGGGCCGGC    TTGCGTGCGGCCCGT 100 33
CXD78_RS07335 1509091 .. 1509104 +  -3.1  -2.87243   GCCGGCTGAACTTGC               TGCTA TGAC TGGCA                TCGTTATCGTCGTGC  41 32
CXD78_RS07340 NONE
CXD78_RS07345 1509895 .. 1509921 + -10.8  -2.62735   AAAACCTCAGGTTCC         GGCAGCCCGC CGTCGGC GCGGGCTGCA         TCGTCTACGCGCTCT  59 42
        ptsP 1511716 .. 1511733 + -10.5  -5.64006   GGTGGCACGGCAAAA             CGGTGCC TTGC GGCGCCG              TTTTTTTCGTTGCAT 100 47
CXD78_RS07365 NONE
CXD78_RS07370 1514881 .. 1514899 +   -16  -5.31275   GGGCGCGGCAATGCG             GGCAGGCC TTG GGCCTGCC             TTTTTTGTCGTCAAA 100 72
        ehuB NONE
        ehuC NONE
        ehuD NONE
CXD78_RS07390 1518039 .. 1518049 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS07395 1519293 .. 1519333 +  -5.9  -3.29144   CGGGGCGGCCCTCGG  GATGCCGCGGGAGGTCATC CGT GATGTCGTGCCACGGCGCC  TTGTGGGCGACGTAG  53 265
CXD78_RS07430 1525227 .. 1525242 +  -7.5  -2.71011   GCGGAACAGGGACCG              GCGCG CCGTCC CGCGC               TGATTGCGAAGGGAT  51 7
CXD78_RS07435 1526493 .. 1526512 +   -15  -5.15634   CGCCCGCATGGAAAA            CCGGACGC GCGA GCGTCCGG             TTTTTTCATGGCCTC 100 72
CXD78_RS07445 1528104 .. 1528130 + -17.3  -5.26875   GCCGGCGCCGTCCAG        GCCCGC-CGCCC TTCG GGGCGCGCGGGC         TTTTTTCATTGGAGG 100 46
CXD78_RS07450 NONE
CXD78_RS07455 NONE
CXD78_RS07460 1529039 .. 1529057 +  -4.4  -2.77523   CCGTGCCCTTGCCGC             TGGCGCTC TGA GTCCGCCA             TGATCTTCCTGCGCA  43 15
CXD78_RS07465 1529640 .. 1529657 +  -9.1  -3.41836   AAAATAGCCGATTCG             CGGC-CGC CTG GCGGGCCG             TCTTTCCATCCCTAT  63 129
        purE NONE
CXD78_RS07475 1531383 .. 1531397 +  -3.4  -2.60075   GCGCTGGGCATGGCC               GCGCCG CTC TGACGC               ATTGATTCCCGCCGC  39 14
CXD78_RS07480 1532482 .. 1532498 +  -7.2  -2.62184   AACTCCTGATTGCCG              CGCCTG CCGGC CGGGCG              TAATCTCACGCGGAC  47 56
CXD78_RS07485 1533622 .. 1533659 + -10.5  -3.06162   CTAGGGCGAGGGCGG   CGGGGCGGGCAAGATCGC CAA GCGATAC-GCCTGTCCCG   TATTGCGGTACGCTA  60 37
CXD78_RS07490 1534563 .. 1534581 +  -5.9  -3.62518   GTATTTGATGGGAGA             GCAAGGG GAATA CCCTAGC             TTTCCGGATCTTTCG  59 50
CXD78_RS07495 NONE
CXD78_RS07500 NONE
CXD78_RS07505 NONE
CXD78_RS07510 1537951 .. 1537974 + -19.6  -2.75064   TGGGTTGAGCCCGGC          CTGCCGCGCG CGCC CGCGCGGCAG           TGGTTCCATGGCCGG  93 33
CXD78_RS07515 1539661 .. 1539691 +    -9  -3.89956   CCGGCACGCCGGGCG      CGATGCCGC-CGCG CAACA CGCGGGCGGCG-CG      TTTGGTCTATCCTGC  73 55
CXD78_RS07520 1540305 .. 1540344 + -12.1  -3.73072   GCACGCGGGGAAGTT  TGCCG-GTGCCAGTCCCC CTTGC GGGGACAGGCACGCGGGG  TTTAGTAGAAGGCTT  77 122
CXD78_RS07535 NONE
        xerD NONE
        ybaK 1545905 .. 1545927 +  -9.1  -2.94144   TCGTCGCATGACCAG          GCCGGCGCGT TACG GCG-GCCGGC           TCCTTTCCATGGAGA  56 100
CXD78_RS07550 1546501 .. 1546515 +  -5.6  -3.57144   CGCAGTTCCTGGCGG               TGCTGG GCA CCCGCA               TTTCGCACTGACCCC  54 0
CXD78_RS07555 1547035 .. 1547045 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS07560 1548509 .. 1548527 +    -3  -4.07885   CGGATAGTTGCGGCC             CAGCGC GTGGGCG GCGCGG             TTTTCCGAGGACATC  58 485
CXD78_RS07575 1551219 .. 1551233 +  -9.2  -3.28712   AACTGGGAAAACATC               GCCGCG CTG TGCGGC               TTCTAGGCCGCGCGC  61 187
CXD78_RS07580 NONE
CXD78_RS07585 1557834 .. 1557892 + -24.1  -2.71731   TGATGGGTCCGGTCG -G-GCCGGGGCTCGCCAGCTACGCATTCT GTT AGAATGCGTAGCTGGCGGGCCCCTTCGCA TGGTTCGGCGGTGAA 100 521
         ffs 1558003 .. 1558038 + -10.7  -2.70932   AGGGGCGCCGTGACC   GGAATGTATCGCGATCC AGGC GGATCGC-AT-CATTCC    TGGTTGCGGCGCCCC  60 54
CXD78_RS07595 NONE
CXD78_RS07600 1560604 .. 1560638 + -13.5   -2.6927   GCTGCCGTTCTGATA    TCGC-CTTGGCGGCCC AGCC GGGCCGCCGGGCGCGC     TGCTGTCTGCGCGAT  67 28
        recR 1561295 .. 1561305 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS07610 1562498 .. 1562527 +  -2.7  -4.13767   CGCCGTCCTCGAGTA       TGACC-AGGCGGGC GTT GCGCGCATCGGCCA       TTTTCACATCCGACA  61 214
CXD78_RS07630 1565546 .. 1565580 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS07670 1573214 .. 1573266 +   -11  -3.28791   CGCGCAGGCATGCTG CGCCGCGCGGCCATCCGGCGGGGCC GCAA GGCGCCGCCGGGCA-CCGCCCGATG TTATCCCCGGCAAAT  66 298
        mutS NONE
CXD78_RS07685 1578143 .. 1578164 + -15.9   -4.4078   GGGCAGGCATGCTAA           TGGCCTCCG GTAA CGGAGGCCA            TTTTCATTGCGCGAA 100 520
CXD78_RS07690 1578946 .. 1578969 + -18.2  -5.40474   CCAGGCCAAAAAAAA          CCGGCAAGCC TTGC GGCTTGCCGG           TTTTTTTGCGCCGCT 100 50
CXD78_RS07710 NONE
        glnH NONE
        glnP NONE
        glnQ 1585424 .. 1585445 +  -8.8  -3.05844   GTGGAAACCGCGTCG           TCGTGCAT CGTGAC ATGCACGA            TATTGGCGTCGGCCG  55 165
CXD78_RS07755 1591246 .. 1591257 +  -4.4  -3.35679   GTTCGTGGGACGCGG                CTGA GGTT TCAG                 TTCTCGCTGGCGGCC  51 22
CXD78_RS07765 1594004 .. 1594014 +  -3.2  -3.89614   TTACGCTCGGCTTTG                 GTCA GAT TGGC                 TTTGTCGCCCTTGGC  58 441
CXD78_RS07790 1596767 .. 1596793 + -12.2  -3.05384   GCGCAGCGCCGCCAC         CTCGGCGTCGCC CGG GGCGGCGTCGAA         TTCGGTGAGGCCGGC  66 492
CXD78_RS07800 1599044 .. 1599060 +  -6.5   -4.8083   AACTTGCGGCCGCGC              TGTCGGC CAC GCTGGCA              TTTTTCGTGCTGTTG  82 139
        rdgB 1603187 .. 1603197 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS07820 NONE
CXD78_RS07825 1605551 .. 1605573 +  -7.6  -4.16842   CCAGGAGTGCGGGAC           CTGGCACGCA TTT TGCTTGCCTG           TTTATTGCCAGTCGG  74 133
        glnA 1607043 .. 1607095 + -22.1  -3.11634   ACTACAGCCTGTAAT CCGGGAGGCTGTGCGGCG-GCGGGCC TCGC GGCCCGCCCGCCGCGC--CGTCCCGG TTGCCTCCTATGACG 100 27
CXD78_RS07835 NONE
        ntrC NONE
CXD78_RS07850 1611479 .. 1611501 + -11.9  -4.56597   TGCCGTAAAGTGAGA           CGGGCGCCG CCAGC CGGCGCCCA           TTTTTCCACGGCGCG 100 33
CXD78_RS07855 1612643 .. 1612677 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 214
CXD78_RS07880 1618286 .. 1618299 +  -9.5  -5.27335   CGCCGCCAGGAAAAG               CCGCC TTCG GGCGG                TTTTTCTTTGGCCGC 100 48
        dkgB 1621780 .. 1621797 +  -2.6  -3.65351   GAGGGGTGGGCGTAT             TGCTGG ACAAGA CCGGCG              TTTCGCTGACGCTGG  51 478
CXD78_RS07905 NONE
        recG NONE
CXD78_RS07915 1627551 .. 1627577 +  -9.4  -3.14132   GGCCGGCGTGGCGAA        GCCC-GGCCGG AAATGC TCGGCCAGGGC         TTGCTCGACCACGCG  59 58
        mmsA 1630089 .. 1630118 + -18.6  -2.67316   GTTCGGGCTGAGCGC       GCGCCGGCGCGGC CGGGC GCCGCGCCGG-GC       TGCCTTGTTGCGTTC  87 30
CXD78_RS07930 1630705 .. 1630726 + -15.9   -5.4505   GCGCGCAGAAGAAAA           GCCGGCATC GAGA GATGCCGGC            TTTTTTCTTGCCGGG 100 47
CXD78_RS07955 NONE
CXD78_RS07960 NONE
CXD78_RS07965 NONE
CXD78_RS07970 NONE
CXD78_RS07975 NONE
CXD78_RS07980 NONE
        tviB NONE
        tviC 1646029 .. 1646079 +  -2.7  -3.07816   GCCGCCATGCCCTGG TACACGCAATTCCTG-CG-ATGA TCGAGCT TCATTCGTCAGGCATCGCGCGTA TTCCGTACCTGACGG  42 5
CXD78_RS07995 1648114 .. 1648132 +  -5.2  -3.13403   GATGAGCCGGAGCAT             GGCATGAG CGC CTCGTTCC             TGTTCCTGCAGGGCG  49 36
CXD78_RS08000 1649310 .. 1649320 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 43
CXD78_RS08005 NONE
CXD78_RS08010 NONE
CXD78_RS08015 1652871 .. 1652905 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS08080 NONE
CXD78_RS08085 1666259 .. 1666295 + -11.4  -3.01712   TATGCGCCCGATGCC    GTCGTGCGGGCGCTGG ACGCG CCGGCGCTGGCGCGCC    TGTTCGCGGCCAGCG  65 427
CXD78_RS08095 NONE
CXD78_RS08100 NONE
CXD78_RS08105 NONE
CXD78_RS08110 NONE
CXD78_RS08115 1672908 .. 1672934 + -22.3  -3.05384   GGCAAGTAGGCGCGG         GCGGGCGCGGG CGGGC CCCGCGCCCGC         TTGCGTCGCGCACGC 100 32
CXD78_RS08130 1675622 .. 1675669 +  -5.4  -2.73468   ACGGCGATGACCGCG TGCGCGGGCTC-CAGCCGGGT GCTCACG GTCAGGCGGCGCGCTCGCGCA TGCTTGAGGATATTG  43 191
CXD78_RS08145 1681437 .. 1681457 +  -8.2  -3.34895   CGATGGCGGCATCTT            GCCTTGGC GAATG GCCACGGC            TTGCTTCAGGCTGGC  59 267
CXD78_RS08165 1683563 .. 1683601 + -10.1  -3.65351   GAACCGGTCTGAGCG  CCGGGGCGGCGGCG-CCC GCAT GGACCGCCGCCGTCGCGA   TTTCCATGACGGTGC  67 29
CXD78_RS08195 NONE
CXD78_RS08200 1690267 .. 1690308 +  -3.7  -2.71791   CTCGACATCAACGGC GG-CGCCGTGATGCTC-TG ACACGC CATGCGCATCGCAGCGGCC ATTTGCACCAAAACT  41 8
CXD78_RS08205 1691686 .. 1691700 + -12.8  -4.15044   GTCGCACTGCGCCAG               CCGGGC GTA GCCCGG               TTTCTTCAGGCGCGC  86 383
CXD78_RS08215 1693630 .. 1693645 +  -5.4  -3.67597   CAGTCGGTGCCGGCC              GG-CCTG CCG CAGGGCC              TTGTTCCCTGGGAGC  57 286
CXD78_RS08225 1695365 .. 1695399 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS08265 NONE
CXD78_RS08270 1702928 .. 1702940 +  -4.8  -3.01712   CAGTACGATATCGTG                CTGG CGCGC CCAG                TCTTCCACCCCCGCG  46 363
CXD78_RS08280 1703950 .. 1703960 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS08285 1705437 .. 1705492 + -11.7  -4.07568   CCAGCGTATAGCCGT CCGGGGTGGCCTTGGCCAGCGCG-TCG GCGC CGATCGCGCCG-CCGCCGCCGCCGCGG TTTTCCACCACGACC  82 498
CXD78_RS08295 1709049 .. 1709062 +  -2.3  -3.01918   CGCAAACCGGGAGTC               CTGCC TGAT GGAAG                TCGTTTATGCCCTGG  41 18
CXD78_RS08300 NONE
CXD78_RS08305 NONE
CXD78_RS08310 NONE
CXD78_RS08315 NONE
CXD78_RS08320 1712197 .. 1712207 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 117
CXD78_RS08325 1713244 .. 1713269 +  -8.2  -2.70932   TATGGTAGAAAGGTC         AGCGGCAGGCC ATGAC GGCC-GCCGCC         TACTTCAAGGAGCGA  52 58
CXD78_RS08330 1713862 .. 1713877 +  -4.6  -2.84454   CGCATTCAGGCAAAA              TGTCGG CTGT CCGACC               CTTTAAGTCCTTTAT  44 90
CXD78_RS08335 NONE
        tadA NONE
CXD78_RS08345 1716242 .. 1716288 +    -7  -4.56597   AGCACACCCACTGAA CGCAGGCCCCGCTACGTGTCCT GCC GGGGCACCCAGGCGGGCTGGCG TTTTTCCAGGAAAGA  77 27
CXD78_RS08370 1722854 .. 1722897 + -12.2  -3.28924   GGCATCGAGGCGTAA GCGGGGCGCCCGC-GCGCGGC CTG GCCGCGCCGCCCGCGGCATGC TTATAACGACAGGTA  71 26
CXD78_RS08375 1723817 .. 1723840 + -17.4  -2.61695   TCATACCGATACCGT          GTCGCGGGCC CGCC GGCCCGCGGC           CTATTTGCCGATCCC  80 57
CXD78_RS08380 NONE
CXD78_RS08385 1725643 .. 1725665 + -11.9  -3.15544   AATACGTCTGAACCA           CGCGCGGGC CTGGC GCCCGCGCC           TTCATCGCCATGACC  66 30
CXD78_RS08395 1728012 .. 1728040 +  -2.9  -3.59738   GCCTTGGCGCGCATG        GCGTCCTTGACCG AGT CGGACAGGCGGGC        TTTGAGCGTATCGTG  50 464
CXD78_RS08405 NONE
CXD78_RS08410 1729909 .. 1729946 + -11.4  -2.67021   GTAGGTCCGGCCGCG  CCGG-CGGCGGCC--AACC TTA GGTTATGGCCGCTGTCCGG  ATTGCTATTTGGCGC  61 37
CXD78_RS08415 1731528 .. 1731538 +  -8.2  -3.06796   GCATCCAGCAGTTCG                 CGGC GCT GCCG                 TTCGATCAGCTCGGG  55 248
        mltG NONE
CXD78_RS08445 1738988 .. 1739007 +  -2.8  -3.16564   GAGCTGGTGGCGCAA            GCGGCATGA GCC TCG-GTCGC            TTCCTGCCCTGGCAG  44 17
        holB 1740050 .. 1740063 +  -9.5  -4.03078   CCTGCCAGTGACGAT               CGGGC CACG GCCCG                TTTCTCCTGTGATCC  75 30
CXD78_RS08455 NONE
CXD78_RS08460 1741821 .. 1741840 +   -15  -5.52384   CTCCACCTGATCACG            TGCCGCCC ACCG GGGCGGCA             TTTTTTTGCTCGGGG 100 94
CXD78_RS08465 1742702 .. 1742719 +  -5.6  -4.67982   GATGTATCCCTGTGG             CCGTAT CCATCC ATACGG              TTTTCTTCACTCCAA  77 39
CXD78_RS08470 1743670 .. 1743685 +  -2.5  -3.90744   CATCTACAACCTGTG              CAGCG TATACC TGCTG               TTCTTTCGCGGCACG  56 189
CXD78_RS08480 1745016 .. 1745072 +  -7.3  -3.65902   GATACGCGCCGCCTG GCCCA-CATCGT--CG-CGCTGGGGCAGG ACG CCGGCGCCGGCGACGCCGCGGTGCTGGGC TTTGCCTGCGATGCC  61 100
CXD78_RS08490 1747411 .. 1747439 + -19.6  -3.04398   CGCATCGGCGTACCA       GGCAGCCGGCCCC GCAA GGGGCCGGC-GCC        GTTTTCAGCGCAGGC 100 68
CXD78_RS08570 NONE
CXD78_RS08575 1763052 .. 1763068 +  -2.9  -3.71645   TTGTATCCTATGGCT              TGGATGG CAT CGGTCCA              TTTCAATATGACGTT  53 98
CXD78_RS08580 1764136 .. 1764160 +  -6.3  -5.24129   GGCCGTCGATTTCGG          GTGAGGGGCCA GCC TGGCCTTGCGC          TTTTTTCTCCAGCGC  93 173
CXD78_RS08595 1779607 .. 1779630 +    -3  -3.40403   GCGGCCTGCCGCCGG          CTCGGCGCAT GGGG ATTCGCAGGG           TTCTCATGCGCCGGC  48 47
CXD78_RS08600 1780158 .. 1780168 +  -3.2  -4.45261   ATGGTCGGCTTGTCA                 CGAG ATT CTTG                 TTTTCCATTTCTTTC  69 85
CXD78_RS08605 NONE
CXD78_RS08610 1783764 .. 1783795 +    -3   -3.9941   GAGCCAGATATTCGC     TGAC-CGC-CGGGC CGCCGT GCCCGCGCGCGTAA      TTTCCTTCTGCGGGG  58 23
CXD78_RS08615 NONE
CXD78_RS08620 1786645 .. 1786660 +  -4.6  -2.78384   GCGAGAACGCGGCCG              CGACGC TACA GCGTCA               TGTGCTGCGGCAGCC  43 46
CXD78_RS08665 1794874 .. 1794902 + -14.6   -3.6106   AATCCATCATGCATC       GGCGCGCG-CCCGC TGG GCGGGGCGCG-GCC       TTTCCCCCTGTTACG  81 40
CXD78_RS08670 1798599 .. 1798656 + -16.2  -2.71712   CGGGCACACCGTCAC GCGC-AAGGCGGGCTGGTCGCGCCGGT CATGC ACCTGCAGGGTCAGCCCGCCATCGCGC ATTTCGAACAAGGCG  77 63
CXD78_RS08685 1801771 .. 1801817 +  -8.6  -4.18018   CCACGCCCAGCGCGC CGCGCAC-CGCGTGGTTGCCC ACCACC GAGTAGCCGCGCGCGCGCGTG TTTTCGATCAGGCGG  75 197
CXD78_RS08695 1803553 .. 1803570 + -12.7  -4.19735   CTCGAGCGTGAAGAA             GACGCCC GCGA GGGCGTC              TTTGCTTTTGGAGCC  91 53
CXD78_RS08705 1805469 .. 1805482 +  -9.5  -2.81966   GGATGCGCGGCCGCG               CGCCG TCAC CGGCG                TGTCATGGCATTTCC  56 85
CXD78_RS08710 NONE
CXD78_RS08715 1808014 .. 1808039 + -19.1  -4.56597   TACGCCAAATGAAAA         GAGCCTGTCCC GACG GGGACAGGCTC          TTTTTCCCGGCGCGG 100 29
CXD78_RS08735 NONE
CXD78_RS08740 NONE
CXD78_RS08745 1813709 .. 1813719 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS08750 NONE
        tilS 1815876 .. 1815898 +    -9  -3.28924   AAAATACTCAGCTTT           GCCCGCCCAG ACC CTATGCGGGC           TTGTCAGCCAGAGTA  61 83
CXD78_RS08760 NONE
CXD78_RS08765 1817372 .. 1817393 + -14.5  -5.45802   GCCAAAGATCAAAAA           GGCCCTTGA GCAA TCAAGGGCC            TTTTTCTTTTGCGGC 100 37
CXD78_RS08775 NONE
CXD78_RS08780 NONE
CXD78_RS08785 NONE
CXD78_RS08790 NONE
CXD78_RS08795 NONE
CXD78_RS08800 NONE
CXD78_RS08805 NONE
CXD78_RS08810 NONE
CXD78_RS08815 NONE
CXD78_RS08820 1827114 .. 1827124 +  -2.4  -2.66316   TTCATTGAGCGTGGA                 CACC GAC GGGG                 TGATGTCGTGCACCA  38 477
CXD78_RS08830 1829239 .. 1829281 +  -8.2  -3.25073   CACAGCGGCGGCTAT CCCGCGCGCCAGGCGCTCG AACAGG CG-GCGCCCGGCCGGCCGG TGTTCCTGTTGCGCC  58 408
CXD78_RS08840 1831316 .. 1831338 + -10.6  -2.70932   TCGCTGTTCGGTGCG           CCATGAGCGT GCG ACCCTCATGG           TGGTTCGCCGCGGCG  60 20
CXD78_RS08845 NONE
CXD78_RS08850 1833229 .. 1833245 +  -5.1  -4.12198   TCCCTTACAGGCGGG              CAGGC CGGCGGC GCCTG              TTTTACAACCTTGTA  64 45
CXD78_RS08855 1833425 .. 1833452 + -18.6  -5.04385   GCAAGCAGTACCGAA        GCGGCTTGAGAA GACA TTCTCAAGCCGC         TTTTTTGCGCCTGTC 100 83
CXD78_RS08900 NONE
CXD78_RS08905 1842085 .. 1842105 +  -4.5  -3.19157   TTGCCGCTGCATGGG            CGGCCCGCT CCA GGCGGCCAG            TTCGTCCGCTTCGTC  47 99
CXD78_RS08930 1848421 .. 1848434 +  -9.5  -3.53091   CCTGTATCGCCGCAC               CCGCC GCCG GGCGG                TTTGAAAAGCCGGCT  64 7
CXD78_RS08935 1848577 .. 1848601 + -17.2  -4.98531   GCGCCAATATGAAAA          GCCGCCATGC CTTGT GCATGGCGGC          TTTTTGCTTTGGGCG 100 35
CXD78_RS08940 1849287 .. 1849306 +    -5  -4.20696   AAAATACTAGGCGAA            TTAAAGCG TCAA CGCTCTAA             TTTTCGGCTTGGTCG  66 43
CXD78_RS08945 NONE
CXD78_RS08950 1851928 .. 1851953 +  -3.3  -3.61517   TGCGGCTACCGCCGC        TGGC-G-CGCC TGAACC GGCGACGGCCA         TTATTCGCGCGAAAT  49 82
CXD78_RS08955 NONE
CXD78_RS08960 1855087 .. 1855101 +  -3.4  -3.96051   GCGCGGCATCATCAA               CGAGGC TAC GCCATG               TTTCATCTGTTCTGT  58 131
CXD78_RS08965 1856133 .. 1856161 + -15.2  -3.53012   GGGCGCAACCATCCC        GCTTGCCCGGCC CCGGC GGCCGGGCGCGC        TTTCCGGAGCAGGCG  81 41
CXD78_RS08970 NONE
CXD78_RS08975 1858233 .. 1858281 + -18.2  -2.90075   GGTGCTGGCCGAGGT CGTGC-CCTAGGGTGCCTGTCCC TGCG GGGACAGGCACCCTTGCCGCAGG TGTCGTTCCCCGGGC  86 16
CXD78_RS09005 1866961 .. 1866989 + -10.1  -3.06915   CAGAACGTTCAGGCC        GCGGGCGCGCCGC ATG GCGGCGTGGTGGC        TTCGGTCGCCTACCT  60 125
CXD78_RS09010 NONE
CXD78_RS09015 1868458 .. 1868477 +  -4.2    -3.889   ATACGGGCATCCCGG            GGTATGGCG GCT CGCCG-GCC            TTTGCTATCCTTGCG  57 62
CXD78_RS09020 NONE
CXD78_RS09025 NONE
CXD78_RS09030 NONE
CXD78_RS09035 1874869 .. 1874923 + -15.7  -2.71364   GGGGCGGAGAACGAG TAGGCGG-GGATGCGGTGCCTGTCCC CGTG GGGACAGGCACCGTGCCAACCGTCAA TCGTTGACGAAGTCC  75 23
CXD78_RS09045 1876522 .. 1876533 +  -7.2  -4.59773   TCTATATCCAGCATG                GCGG CGCT CCGC                 TTTTTCGGGCTCAAG  79 84
CXD78_RS09065 NONE
CXD78_RS09070 NONE
CXD78_RS09075 NONE
CXD78_RS09080 1882602 .. 1882618 +    -3  -2.78679   CGGGCGAGGGGGCCT              GAGATG CGCGC CATTTC              CTTTCCGTCCCGGCG  40 24
CXD78_RS09085 NONE
        cpaB 1883999 .. 1884013 +  -3.5  -3.01791   GTGCGCGGCGGCGAC               GTGCA GGCAG TGCGC               TATTGACGAACAGCT  44 5
CXD78_RS09095 NONE
CXD78_RS09100 1886803 .. 1886826 + -12.4  -3.16564   CCGCCATCCATGGAA          TTCGGCGCCG CGGG CGGCGGCGAA           TTCATCGCGTCCGAA  69 58
CXD78_RS09110 NONE
CXD78_RS09115 NONE
CXD78_RS09120 NONE
CXD78_RS09130 NONE
CXD78_RS09135 1894950 .. 1894986 +  -4.4  -3.04398   CCGAAACGGCCGATG   GCGTGG-CCGATCCG TAACCGGC CGGGTTGGGCCACGG    GTTTTACGAAACCGC  45 9
CXD78_RS09140 1895790 .. 1895805 +  -3.2  -3.83318   GTATGGCGGGGCGGG              GCATAG GCGG CTACGC               TTGTATTATTGCCGG  56 74
CXD78_RS09145 NONE
CXD78_RS09150 1897150 .. 1897176 + -11.5  -3.65351   GGTCCGGCGCCGGTT        CGCCGGCGCCGC GGCC GCGG-GCCGGCA         TTTCCGTCCAGCTCG  75 105
CXD78_RS09155 1897762 .. 1897774 +  -2.6  -3.29471   GCTGGGCGAGCCCCC                GGTC CCTTC GGCC                TTCGTATCATGAACG  44 1
CXD78_RS09160 1898263 .. 1898282 + -16.4  -3.75629   CCGGGGCAAAAAAAA            CGGGCCGC GCAT GCGGCCCG             TTTCGGTTGCGCCTG  88 95
CXD78_RS09180 1902575 .. 1902587 +  -7.7  -2.71144   GCCCTCCAGGCCCGT                GACGT CGA ACGTC                TCGTTGCCCACGATG  49 311
CXD78_RS09195 1908532 .. 1908557 +  -4.7  -3.06696   GCAATGCTCGCCTGG         CGCAGGAC-TGG GGT TCACGTCCTGCA         TGTCTTGAAACGCAA  45 133
CXD78_RS09200 1909567 .. 1909601 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 271
CXD78_RS09230 NONE
CXD78_RS09235 1915732 .. 1915751 +  -9.2  -2.72344   GCGCGCATGAACAGC            GGCCTGGC CTGC GCCACGCC             TGCTTCGAAATCGGC  52 243
CXD78_RS09245 1916228 .. 1916246 +  -4.4  -3.66018   GGGTGAACAGGCCAG             CCAGCCGG TGC CCGACTGA             TTCTTCCCATCCTCC  55 7
CXD78_RS09250 NONE
CXD78_RS09255 1918305 .. 1918351 +  -7.2  -3.55444   ACAAAGGGGAGCCAG GCGGCGG-TC-CGCCTGCCGGT CGGAA ATCGGCGAGCGTGTTCCGTCGC TTTACGGAATCGGAG  58 339
CXD78_RS09260 1919063 .. 1919097 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 262
CXD78_RS09280 1922928 .. 1922961 + -15.9  -2.70932   GCGCGCGGCCGCGGC     CGACGTGGCCGGCGC CGGC GCGTCCGCCTCGTCG      TCCTTGAAGCGGCGC  75 93
CXD78_RS09295 1925539 .. 1925595 +  -7.2  -4.64334   GCAAGGCGCGTGCGG CCCT-GTCCACGCGCGGCGGCCCC-CC GCGCAA GGCGGGGCAGCCGC-CGCCAACCAGGG TTTTGTTGCGGCGTT  79 173
CXD78_RS09300 NONE
CXD78_RS09305 NONE
CXD78_RS09310 1928142 .. 1928180 +  -5.3  -4.07568   ACCAGAAGGCGAGAG   AGCAACGCTTAGTGCTG CGAGT CAGTGTTAAGCGTTGGG   TTTTGGCCCGACAGC  64 72
CXD78_RS09315 1931405 .. 1931415 +  -6.8  -3.65314   AACCGACTGCCAGGC                 GCAC GCT GTGC                 TTCTTCCAAATTCAA  61 127
         rrf 1931590 .. 1931624 + -19.5  -4.59773   CAGGCTTTTATTGCT    CAAAACCCCGC-AGCC TCAC GGCTCGCGGGGTTTTG     TTTTTGGGGGTACGC 100 36
CXD78_RS09340 1935520 .. 1935542 +  -4.7  -2.70932   TGAACGGCCGATGCT           GCAGCAGCG GGTGG CGCAGCTCC           TCGTTGGCGCGGCGC  43 296
CXD78_RS09385 1943997 .. 1944007 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 180
CXD78_RS09390 1945046 .. 1945056 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS09395 1946205 .. 1946244 +  -8.4  -3.60098   AAGCGCCGTGGCAAA  CACAGGAGTCGCCCGCGCG TTG CGCGTGCGCGGC-CATGGG  TTTACGCTAGCGCCT  62 170
CXD78_RS09400 1948502 .. 1948515 +  -5.9  -3.82824   GCAGGTCGGCCAGGA               CGGCG TCGA TGCCG                TTCTTGTCGATCGTG  63 408
CXD78_RS09425 1952729 .. 1952783 + -11.8  -3.84712   CTATTGACAGTTCAC AGCTAGGATGCCGCCGACCCCGGCGC CAT GCGCCGGGGTCGGCCGTCGCAAATCA TTTCATCTCCAATTG  79 20
CXD78_RS09430 1954307 .. 1954319 +  -4.7  -2.71712   GTCGCCGGCCCCGTA                CGCCG GAG CGGCC                CTTTCCCGGGCCGCG  43 145
CXD78_RS09435 NONE
CXD78_RS09440 1956529 .. 1956548 + -11.4  -4.11692   CGATATGATGGAAGA            CGGTCACC AGTG GGTGGCCG             TTTTCCCAATCGCTC  82 78
CXD78_RS09445 1956958 .. 1956973 +    -6  -2.83112   GGCCGCTGAGGCATG              CCGCGG CGAG CGGCGG               TATGATCGATTGCAT  48 32
CXD78_RS09450 1958273 .. 1958300 +  -2.5  -3.08679   CTGCGGCGAGGGGGG        GGCGCAGTGGC TACAAT GCCGCGATGCC         TATTCGCTACACCCC  42 87
CXD78_RS09455 1959130 .. 1959142 +  -3.3  -3.78793   GGCCGCCGCAAAGCA                GGCTA CCA TCGCC                TTATTCATAATTATG  56 89
CXD78_RS09460 1959988 .. 1960015 +    -9  -3.01712   GCCGCCGGCGAAAGC        GCCGGCCTGATC GCCC GGCTGGGCCGGC         TGTTCGAGCGAGACA  57 69
CXD78_RS09465 NONE
CXD78_RS09470 1962459 .. 1962488 +  -8.5  -2.62983   AGCGCTTCAGGACGG       TGGCGCGCAAGGCC GAC GACCTGGC-CGCCA       TCCTGTACACGTCCG  52 485
CXD78_RS09480 1964743 .. 1964766 + -13.8    -4.015   TGAGGGACGAAAGGG          GAGCGGCGCC GGCC GGCGCGGCTC           TTCTTTCATCGCTGG  84 53
CXD78_RS09485 1965391 .. 1965410 +  -5.6  -3.32343   GTGAAGTAGGGGTTG            C-GCCGTCC CGC GGCCGGCCG            TTCTAGGGATATCCC  51 32
CXD78_RS09490 1966525 .. 1966557 + -19.2  -3.53012   TCAAGTAATCGCGTA     T-TCGGCCGGGCGCC GCGC GGCGCCCGGCCGGCA      TTTCCACCGAACACA 100 33
CXD78_RS09500 1968544 .. 1968587 + -10.9  -3.14344   GGTTGCGCGCGGACA GGCGCAGGCCG-G-GGCCGGG CAGG CCCAGCAGCACCGCCTGCGCC TTGATCAAGGCGATG  64 257
CXD78_RS09510 NONE
CXD78_RS09515 NONE
CXD78_RS09520 1971752 .. 1971768 +  -2.1  -4.62069   GCGCGCTTTTACCTC              CGTGAGG AAT CCATGCG              TTTTTCGCCTCAGCG  70 266
CXD78_RS09525 1973097 .. 1973128 +   -15  -4.26076   GCCAGCAGTCCTAAG      CGGCGCGCGGCGCC CGAC GGCGCCGCGTTCCC       TTTTCGTGAGCATCG  95 27
CXD78_RS09530 1976594 .. 1976625 +  -6.5  -3.61398   TGGCGCCGCAGGGCG      C-CACGCCGGCCGA CGAGA TCGGCTGGTGCGAG      TTCTTCCGCGACGCG  56 227
CXD78_RS09540 1978631 .. 1978649 + -11.6  -2.56271   GCGGCCACGCCTGAA             GCAGGGCG GGG CGCCCGGC             GTATTATCATCACGA  61 27
CXD78_RS09545 NONE
CXD78_RS09550 NONE
        uvrC NONE
        pgsA 1982761 .. 1982771 +  -8.2  -3.85698   GTGGCGGGCTGGTTC                 GCGG CCG CCGC                 TTTCTGGAGACCGCG  68 111
        aceA 1986564 .. 1986602 + -13.7  -2.90392   TCAAGGCGGCGTGAT  CGGGC-GGCGCCCGCCCC GCAT GGGGCCGGCGCCAGCAAG   TGTAGTTGCAGGGTG  71 27
CXD78_RS09580 NONE
CXD78_RS09585 1988026 .. 1988042 +  -5.1  -3.78034   CCCGGTGGCCAGGGC              GCTGG ATACGTC CCAGC              TTCTTGATGTCGATG  58 494
CXD78_RS09610 NONE
CXD78_RS09615 NONE
CXD78_RS09620 NONE
CXD78_RS09625 1995138 .. 1995151 +  -2.4  -4.25658   CACGACGGGAACGCC               TCGT ATGACA ACGA                TTATTTTCATCGCCT  62 43
CXD78_RS09630 NONE
CXD78_RS09635 1996697 .. 1996712 +  -6.1  -3.20382   CGTCGATCGACTCCT              GCGCT TCGGCC AGCGC               TTCGTAGATCTGGAA  50 100
CXD78_RS09665 NONE
CXD78_RS09670 2006243 .. 2006253 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS09675 NONE
CXD78_RS09680 NONE
CXD78_RS09685 2008846 .. 2008864 +  -6.8  -3.28712   ATGCCTAAGCCATAA             GATGTATT ATA GATACATC             TTATAAACCGCAGGA  54 442
CXD78_RS09695 NONE
CXD78_RS09700 NONE
CXD78_RS09705 2010989 .. 2011005 +  -2.1  -3.08046   CCCAAATCTGCGAAA              ATCCGCC GTT GGCCGAA              CTTTTGCAGTGAGAA  42 60
         xth NONE
CXD78_RS09715 2013410 .. 2013421 +  -2.2  -2.90571   CCGCTACCAAAACGG                C-CGG AAT CCGTG                TATAGTTGCGGACTT  40 82
CXD78_RS09720 2013533 .. 2013560 + -12.8  -5.63517   ACACCAGACGGAAAA        GCCTTGGA-CACG CCA CGTGGTCCAGGGC        TTTTTTGTTTCCGGC 100 42
CXD78_RS09755 2019821 .. 2019848 + -18.4  -2.50443   CAGACGCCTCCCGGC        CAGGCGCGCGCA CGCC TGCGCGCGCCCG         CTTCCTGCCCTCTCC  87 406
CXD78_RS09780 2024061 .. 2024079 + -17.4   -5.1971   CACCAGTTTTCTCAT             GGCCGCGC CCA GCGCGGCC             TTTTTGCTTTTTCCT 100 249
CXD78_RS09810 2029558 .. 2029568 +  -2.4  -2.71461   AGCAATCGGCATTGC                 CGCC ACG GGCC                 TCGGTTTCCTATTCT  38 101
CXD78_RS09815 NONE
CXD78_RS09820 NONE
CXD78_RS09825 NONE
CXD78_RS09830 2034782 .. 2034828 + -17.2  -3.56821   CAGCGGCGCAGGCCC GTCGCCGCC-GGCCGGCGCGG CGTCCC CTTCGCCGGCCTGGCGCCGGC TTTCCAGGATCTCCT  93 418
CXD78_RS09845 NONE
CXD78_RS09850 NONE
CXD78_RS09855 2038372 .. 2038406 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 213
CXD78_RS09875 2040806 .. 2040816 +  -2.4  -2.71712   CCGCTTGCCGGGATA                 CTGG GGG CCCG                 CTTTCGCCCGCGAGA  38 75
CXD78_RS09880 NONE
CXD78_RS09885 2043833 .. 2043864 +  -6.4  -3.23216   CAGACGCGATTGACG      CGCGCC-GCCTCGGG CCC CTGGTGGCCGGTGCG      TTCGTGCTCGTGCGG  50 480
CXD78_RS09895 2045031 .. 2045088 + -21.1  -2.83403   GTTTAATAGCAACAT CCTTCGTCCTTCGAACCGCCGCCCGGC CCAT GCCGGGCGGCGGCCCGGGCGATGGCGG CTTTCCTGGCGGCGC 100 102
CXD78_RS09900 2045863 .. 2045889 +   -10   -3.5393   CCAACCGCGATCTGG         TGGCCGCCCTGC TCA GTTGAGCGGCCA         TTTGCGCCGGATCAT  67 6
CXD78_RS09905 2048111 .. 2048131 +  -5.3  -3.57144   CGATGGGCCCGGGCA            GCAGCCGCT CGA AGCGGATAC            TTTGCGCGTCCAGGC  54 514
CXD78_RS09920 2049522 .. 2049573 + -11.6  -3.14931   CGCGCCCGGCTCAGT C-GGCCGGCG-CGCGCCGCACCG-CG GCGT CGACGATGCG-CTCGGCGCCGGCCAG TTGCTGCGCCATCCC  66 41
CXD78_RS09930 2050414 .. 2050445 + -24.6  -2.82759   TACGGAAGGATTCGG      CAGGAGCCTGTCCC CGTC GGGACAGGCTCCTG       TGTCATAGGTATCTT 100 121
CXD78_RS09940 2052242 .. 2052260 + -10.2  -3.01712   AGGTCGTAGCGCATC             GCCGCCAG GCG CTCGCGGC             TGTTCAGCGGCAGGA  59 358
CXD78_RS09950 2054230 .. 2054245 + -10.4  -2.78384   GCCAGCTCGGGGTCG              TCGCGC AGCC GCGCGA               TATAGTCGGCCACCC  56 498
CXD78_RS09965 2056796 .. 2056818 + -11.3  -2.70932   TGGCGCTGTAGCTCA           CCAGCAGGC ACTTG GTCTGCTGG           TAATTCGACAGCGCC  59 148
CXD78_RS09975 2060570 .. 2060604 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  50 191
CXD78_RS10020 2068540 .. 2068574 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS10030 2070438 .. 2070465 +  -5.5  -3.66058   CGCCGCGCCCGCCGC        CGC-CGTGGCGC AACCC GCGCCATGAGCA        TTCTCTATCTGCTGT  57 1
        ccoS 2070985 .. 2071008 +  -7.4  -3.28924   TCGTATTACGTGGTG          CAG-CGCACCT GTC AGGCGCGGCTG          TTCTGCGACAAGCTG  56 408
        ccoO NONE
CXD78_RS10050 NONE
        ccoP NONE
        ccoG NONE
CXD78_RS10065 NONE
CXD78_RS10070 2076063 .. 2076080 +  -3.3   -3.6761   GCGGCCAGGACGAGA             CGCCGTT CTGA AGCGCCG              TGTTTGTTGCGACGC  53 15
CXD78_RS10075 NONE
CXD78_RS10080 NONE
CXD78_RS10085 NONE
CXD78_RS10090 2079676 .. 2079703 +  -6.2  -3.01712   GGCCCGGATGGTGGC        GGCCGTC-AGCTG CGC CAGCGCGACGCCC        TGTTCGGGCCCGGCG  48 476
CXD78_RS10100 NONE
CXD78_RS10105 2081455 .. 2081494 +  -9.4   -3.5361   CCTGGACGAATACAA  CCTATTGACAGTTCACAC CTAG GTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD78_RS10110 2082861 .. 2082885 +  -4.9  -3.77087   AGAGCCGACTTGTAA          TCGGCCTCG GTGCGTA CGGGGCGGA          TTTCCATGTTCACTC  58 361
CXD78_RS10120 2083940 .. 2083957 +  -8.3  -3.67954   GGCGCGGCTGGGGTG             GCGCAGC TTGC GCAGCGC              TTTGGCCTCTATTTG  67 483
CXD78_RS10225 2108749 .. 2108767 + -17.4  -3.15544   TCTGAACGCAAGGGC             CCCCCGGC GCG GCCGGGGG             TTCCTGCCCATGGCA  84 36
CXD78_RS10240 2111736 .. 2111746 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS10245 2112729 .. 2112768 +  -9.4   -3.5361   CCTGGGCGAATACAA  CCTATTGACAGTTCACAG CTAG CTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD78_RS10255 NONE
CXD78_RS10260 NONE
CXD78_RS10265 2115559 .. 2115581 + -11.2  -3.57144   CGACGCGCTGGCCGC           GCTGGCGCGC CGC GCGCCCTAGC           TTTCGCGCTCGCCCG  70 4
CXD78_RS10285 2118312 .. 2118331 + -16.4  -3.90112   TCGCGCCAAGACAAA            CGGCCCGC TTGC GCGGGCCG             TTTGCTTGCCGGCAG  93 53
CXD78_RS10375 NONE
CXD78_RS10380 2139164 .. 2139182 + -17.4  -3.10522   GTACGCCAAAAAAAA             CCCGGGCC AGC GGCCCGGG             TCTGTTGCGTCGCCT  84 135
CXD78_RS10435 2151021 .. 2151031 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 86
CXD78_RS10440 2152389 .. 2152404 +    -6  -2.50699   CAGGTCGAAATGCTC              GGCGGC AAAC GCCACC               ATATCTTCCTTGAGC  44 379
CXD78_RS10500 2162912 .. 2162940 + -19.7  -4.15508   GGCACGGCCGGCATC        GAGAAGCGGAGCC CAT GGCTCCGCTTTTC        TTTTGCGGCTTGCTT 100 45
        lexA 2163721 .. 2163735 + -12.8  -4.74103   CTACGCGGGCTTGCT               GCCCCC CGA GGGGGC               TTTTTGCCTTGGGGC 100 75
CXD78_RS10590 2178430 .. 2178454 + -22.9  -4.11692   GATAGCCGAAAAAAA          CCGGGCCCGGA TGA TCCGGGCCCGG          TTTTGCGGGTCGCTG 100 91
CXD78_RS10615 2185282 .. 2185307 + -14.7  -5.14563   GGCGCGCAACAAAAA         GCCCCACTGCC GCGA GGCAATGGGGC          TTTTTTCATGCGGCC 100 45
CXD78_RS10650 2189811 .. 2189847 +   -21  -4.59773   TTCGCGTGCGCAGTC    GAACTGCCGCCATCCC CACAA GGGATGACGGCAGTTC    TTTTTACGGATGGGG 100 70
        dapD NONE
CXD78_RS10670 NONE
CXD78_RS10675 2194196 .. 2194206 +  -4.6  -2.64912   GCGAACAATTGAACA                 CGTG ATA CGCG                 CTTCTGGCTTGACCC  42 21
CXD78_RS10680 2196171 .. 2196181 +  -2.4  -3.58365   GCGCAGCGTAAAACC                 AGCG AGA CGCA                 TTATCTCCTATACTC  48 74
CXD78_RS10685 2199557 .. 2199571 +  -7.1  -3.53012   TGCGGCTTTGCGCCA               GGCTG AGATA CAGCC               TTTCCCGGGCCCGGG  58 488
CXD78_RS10700 2203454 .. 2203488 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS10715 NONE
CXD78_RS10720 NONE
CXD78_RS10725 2210792 .. 2210807 +    -6  -4.08945   CACCACTTTGACAGG              CGGCGC CGCC GCGCCC               TTTTCCCGCCATGCT  66 104
       coaBC 2212192 .. 2212244 +  -9.2  -3.53174   CCTCGATCAGCGAAT GCGACAGCGACAGCCAGGCCAGCGC CAGAAA GCGC-GGCCGGGCT-TC-CAGTTGC TGTTTCTCCGCCTCT  61 191
CXD78_RS10740 2213767 .. 2213801 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS10770 2218720 .. 2218736 +  -2.1  -3.61398   AGCAAGGTATGGCCG              GCCAGCC GGC GGATGTC              TTCTTCACCGCGCAA  50 223
        cphA 2224227 .. 2224247 + -15.4  -3.61398   TTCGCCCCTCTTGCC            GCGCCGCC CGAAC GGCGGCGC            TTCTTCGACGACAGG  83 50
        cphA 2226905 .. 2226922 + -14.1  -5.28176   CTCAAATGTAACTTG             GGCCGGC GCAA GCCGGCC              TTTTTTCTCCCTGCG 100 84
CXD78_RS10795 NONE
CXD78_RS10800 NONE
CXD78_RS10805 2227949 .. 2227970 + -15.9  -5.86965   CGCCGTACGTGTACC           GCCTTCGGG TTCG CCCGAAGGC            TTTTTTTTGGTGCCT 100 73
CXD78_RS10835 2231483 .. 2231501 +  -5.9  -3.16564   GCTGGCTCAGCCTGC             GGCCGAC TGAGC GTCGCCC             TTGATGGCCTCGGCG  51 16
CXD78_RS10845 2234406 .. 2234432 +  -5.1   -2.8352   CGAGCTGGCCACCAT        CCGGC-CCGCCGT CTG ACG-CGGAGCCGC        CTTGTTCAGTTACCG  46 10
        rlmJ 2235679 .. 2235721 +  -8.8  -3.28924   CACCACGCCCAGCGC CGCCCGGCGCAGGCCCGGCG CGA CGTCCGGATAGCGCGCGGCG TTCTCGCCGGCGATG  59 407
        cueR 2238538 .. 2238560 +  -8.3  -3.29144   CGGCCGCCTCGGCAA           GGCGCTCGG CCTCC TCGCGCGCC           TTCTGCCGCGCCTGG  58 72
        plsY 2245889 .. 2245917 +  -2.9  -3.86015   CCACCGCGCGCCGAT        GACCGCGAGTTGG TGC CCAAAGCGAGGAC        TTTGTGGGACAGATA  56 162
CXD78_RS10915 2247413 .. 2247440 +  -9.8  -2.52464   GGCGCGGATGGCCTT        GGCCGCCAGC ACCTCGAC GATGGCGGCC         TGCGTTGCCGCCGCC  55 402
CXD78_RS10925 2249625 .. 2249655 + -18.3  -3.58343   CGCGCGCCTCGCCCC       GCAAGCAGGCCGC CTCGC GCGGCCTGCCTGC       TTTCGAGGTCGTCAA  90 49
CXD78_RS10935 2251465 .. 2251480 +  -4.6  -3.64703   AATTCCAGTTGCGCG              CCGTCG GCGT CGAAGG               TTTCGCTGCGCACGC  54 146
CXD78_RS10960 NONE
CXD78_RS10965 NONE
CXD78_RS10970 NONE
CXD78_RS10975 2260598 .. 2260608 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS10980 2261789 .. 2261803 +  -8.5  -3.35813   TGCCTGGAATAAGGG               GCCGC TCGGC GCGGC               TTCGTTAACCTCGAC  59 202
CXD78_RS11005 2267217 .. 2267230 +  -8.1  -3.06261   CGACCTGCGCCGCCA               GCTCG GCTT CGAGC                TGTTCCGCGTTCGCG  52 279
CXD78_RS11015 NONE
         alr NONE
CXD78_RS11030 NONE
CXD78_RS11035 2274990 .. 2275005 +    -6  -3.53811   CGCAGCATGCGGTCC              GCGGCG GTCT CGCCGG               TTTCCACCACGTAAC  56 158
CXD78_RS11050 2277131 .. 2277164 +  -2.3  -3.60792   GTAGTCCCCATACGT     CGCGTCGTAAGTTTT ACGG AAGACGTTCAGCGCG      TTGTATCTGAATGCT  48 37
CXD78_RS11055 2278319 .. 2278329 +  -2.4  -4.07568   CACCACCGCCAGCGT                 GCTG ATG CTGC                 TTTTCCGAACCCGGG  58 448
CXD78_RS11165 NONE
        sycN NONE
CXD78_RS11175 NONE
CXD78_RS11180 NONE
CXD78_RS11185 NONE
CXD78_RS11190 NONE
CXD78_RS11195 NONE
CXD78_RS11200 2299931 .. 2299952 + -12.9  -3.01712   TCGCCGCCGACCTAG           ACGCCGCGC GTCA GCGCGGCGA            TATTCGGGGCCGAGG  70 65
CXD78_RS11210 2302162 .. 2302174 +  -4.1  -3.55444   AGGCGGTCGCCCGAG                TCGAG GTC TTCGA                TTTCCACGGTCGCGC  51 511
CXD78_RS11220 2305213 .. 2305253 +  -3.2  -3.28712   CGTAGCGGTCCAGGT CCT-GTCCG-GTCATGGCGG CGA CCGCCTTCACGTGGCCCAGG TTCTCGGCCACCAGG  47 523
CXD78_RS11230 2306500 .. 2306524 + -11.4  -3.14344   TGGCGCAGCGGCTGG         CGGCGCG-CTG AAGC CGGCCGCGCCG          TTGATGGCGCGCATC  66 15
CXD78_RS11235 2308099 .. 2308133 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS11270 NONE
CXD78_RS11275 2316219 .. 2316235 + -15.1  -3.05384   GGCTGCGCCGAGACG              GCCGGCG TGG CGCCGGC              TTCGGTCGGCAGGCC  74 475
        htpX 2318603 .. 2318622 + -16.4  -4.18018   GTCCGCCAGCGAAAA            CGCGCCCC GCAA GGGGCGCG             TTTTGCATGAGCCAA 100 52
CXD78_RS11305 NONE
CXD78_RS11310 NONE
CXD78_RS11320 NONE
CXD78_RS11325 2326842 .. 2326897 +  -5.5  -2.82623   GGTTGGACGCCACCA CCACATCGAACCAGTCCGGGTGCTGCAC GAA GTGC-GCGCACAGGATG-T-CGATGTGG TACTTGTCCCAGCGC  44 400
CXD78_RS11340 NONE
CXD78_RS11345 NONE
CXD78_RS11350 NONE
CXD78_RS11355 2334964 .. 2334998 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
        gabT NONE
CXD78_RS11370 NONE
CXD78_RS11375 NONE
CXD78_RS11380 NONE
CXD78_RS11385 NONE
CXD78_RS11390 2342306 .. 2342362 +  -3.7  -3.53012   GGCGCGTCACCATGC CGGTGAC-CGGCTCGCCGCGCAGGA AGGCGCGGA TCTTG-GCCGCCAGCTGCGCCACCG TTTCGCGGCGCAGGC  49 65
CXD78_RS11400 2345189 .. 2345205 +  -2.1  -3.17051   TATCATGCCTATCAG              GCCCGAT TGC ACCGCGC              TGTTGCTGGTGCCGG  43 498
CXD78_RS11415 2348579 .. 2348597 + -17.4  -3.55622   AGCGCAATAACCGTC             CGGGCGGC CAT GCCGCCCG             TTTCCCGGCCTTGCC  89 31
        purD NONE
CXD78_RS11425 NONE
        nadD 2351527 .. 2351539 + -10.5  -3.93489   TCCGCCACATCGACA                CCCGC GCC GCGGG                TTATATTTATCGTTA  77 60
        rsfS NONE
        rlmH NONE
CXD78_RS11445 2353504 .. 2353534 +  -7.5  -2.73364   GATACGGCGCCCGCC      GCGCAGCAACGCGC CCAG GC-CGTGGCTGCGG       TGCTTGGCATCGACC  49 472
CXD78_RS11480 NONE
CXD78_RS11485 NONE
CXD78_RS11490 2364771 .. 2364790 +  -7.8  -3.67597   ATCTAGCGCATCGGG            CCCGGCATG CAG CG-GCCGGG            TTCTTCAATAGCGCC  63 35
CXD78_RS11505 2368095 .. 2368115 + -15.4  -2.57132   CAGGCGCTGGCGCTG            GCCGCCCG ACAGG CGGGCGGC            ATTCTGGCCCACCGG  69 298
CXD78_RS11515 NONE
CXD78_RS11520 NONE
CXD78_RS11525 2371760 .. 2371798 + -19.7  -3.01712   AGCTGACATCCGCGG  C-GAGGTGTGCCTGTCCC CACT GGGACAGGCACACCGCAG   TGTTGACGGGCGCCG 100 84
CXD78_RS11540 2376097 .. 2376136 +    -2  -3.44527   CTCGCGTAGCGGCGC GGGCAGGCT-GCCCGCGG CAGCCA CCA-GGTCGAGCCAGCCC  TTGTCGTAATCGGTG  47 463
        lpxO 2383976 .. 2384011 + -20.4  -2.53015   TGGCACTCTAACCAC    CCGGGTGCCTGTCCCC GCGG GGGGACTGGCACCCGC     TGACTTGGCGCCTGT  95 30
CXD78_RS11580 2389516 .. 2389570 + -13.5  -3.04322   TGGTTTTCATCAAGA AGCTGTAACCAGCCGGCTTGCCGCCG CGCG CGGCGGCAAGCCGGCTAAA-ATGGCC TGTTCGCAACTTACC  70 18
CXD78_RS11585 2389897 .. 2389912 + -11.8  -4.90266   TTCGCCTCATCGCAA              CCGGCC GGCA GGCCGG               TTTTTCATTGATGCC 100 53
CXD78_RS11590 2391900 .. 2391922 + -12.6  -3.61715   TCTCGATGGCTTCTT           CGCCGCGCGC CAG GCGCTCGGTG           TTCTTGACCCCGGTG  74 122
CXD78_RS11615 2397878 .. 2397932 +  -7.2  -3.39327   ATTGAGCGAATCGCC GCCGCGCGCGTAGTACATGTAGAC CACGCCCCC GTC--CATGAACAACGCGCGCCGC TTGTGGGTGTAGCCG  55 480
CXD78_RS11665 NONE
CXD78_RS11670 2407986 .. 2407996 +  -3.2  -2.63631   TCCCTTCGAGCAACC                 TGGG CTA TCCA                 TCATGTCGCAGTTGA  39 53
CXD78_RS11675 2409311 .. 2409321 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS11680 2410345 .. 2410380 + -14.7  -2.70932   TCTAGTGCATCTCAG   CGCGGCGG-GCAGGCGG CCCG CCGCG-GCGCCGCCGCG    TCGTTCCCGCCCACC  72 45
CXD78_RS11725 2418666 .. 2418687 + -14.4  -4.07885   CCGGCATTGCCGCCA           CGGGCCCG CGCAGA CGGGCCCG            TTTTGCAGGACCGTC  85 42
CXD78_RS11735 NONE
        acnD NONE
        prpF NONE
CXD78_RS11750 NONE
CXD78_RS11755 2426996 .. 2427009 +  -3.9  -3.53012   TCACGCTGGTTGTCG               TCAAA CCCT TTTGA                TTTCCGCGCCAGCGA  51 12
CXD78_RS11760 2428444 .. 2428455 +  -7.2  -3.28712   AAGCGCCGGCCCGCG                CGCC ACGC GGCG                 TTGTAAAAGCGCCGC  54 39
CXD78_RS11765 2428897 .. 2428915 +  -7.4  -5.75342   AAGCCCCTTTTAAGA             CCCGCT CTAAACC AGCGGG             TTTTTTTTGGCCGGG 100 96
CXD78_RS11775 2430440 .. 2430460 +  -8.3  -3.09492   AATAACCCTTATACG            TCCCCGT TAGGGAT ACGGGGA            TGTTGCAGTTCACGG  56 39
CXD78_RS11780 NONE
CXD78_RS11785 NONE
        hslO NONE
CXD78_RS11795 2434978 .. 2434994 +  -7.9  -2.84325   ACAGGCCGGACTTGT              CCACGCC GAA GGCCTGG              TCGTATTTGCCGGGC  52 449
CXD78_RS11815 2438468 .. 2438501 + -27.5  -3.16742   CGGAAGACAGCGGTT     TCCGGCCGGGCCGCG ATGC CGCGGCCTGGCCGGA      TTACTGACCATTAAC 100 487
CXD78_RS11910 2458896 .. 2458942 + -16.5  -5.00884   CGGCATGTAAGCGCG GGCGCGCACGTGGGCGCC-GGCA GGA TACCAGGCGCCCTCGCG-GCGCC TTTTTTCCAGACCGT 100 31
CXD78_RS11915 NONE
CXD78_RS11920 NONE
CXD78_RS11925 2461624 .. 2461642 +  -8.8  -3.45849   GATGCCGTCCAGGCC             CGCGGC CAGCCGC GCCGCG             TTGTCGTGGTCTAGC  61 273
CXD78_RS11960 2470216 .. 2470233 + -14.1  -4.41494   AAGGCCCAAGCAAAA             GCGCCCC GTCC GGGGCGC              TTTTGCTTGGGCCTC 100 61
CXD78_RS11970 2471885 .. 2471914 +  -8.5  -3.05596   GACAGTTCACAACTA       GCCGTTCA-GGCCG GCC CGGCCCTGCACCGC       TTCGCTGACCACCTG  55 25
CXD78_RS11990 NONE
CXD78_RS12000 NONE
CXD78_RS12005 2479912 .. 2479939 + -18.4  -2.71924   CATGACCTGAGCCGC        GCGGGCGAGGCC TGAC GGACTCGCCCGC         CTTTCCGGGAGGCTG  87 11
CXD78_RS12010 2480275 .. 2480294 +  -2.7  -3.63266   ATGCGCAACGTACGG            CCCGGCT GAACAG GGCCCGG             TTTCCGATGGATTTT  53 17
CXD78_RS12015 2481117 .. 2481135 + -14.6  -5.78622   CTGCGCAGCGAAAAA             GGCTTGCC AAC GGCAAGCC             TTTTTTTTCGCCTCC 100 50
CXD78_RS12020 2482226 .. 2482248 +  -5.5  -3.83026   AGGCGGCCAACCCAT          GACCCGCACC AGCC GG-GCGGATC           TTTCATGTGCCGCGG  60 24
CXD78_RS12025 2483339 .. 2483349 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 171
CXD78_RS12035 2485549 .. 2485596 +  -7.4  -3.64822   GGTTGGCGATGCCCA CGCCGTGGCCGGCCAGCGCCAG TTGG CAGACGGTGGACGAATACGGCG TTTCGATGGCGGCGT  60 228
         maf NONE
CXD78_RS12140 NONE
CXD78_RS12145 2504518 .. 2504563 + -13.1  -2.71712   TGACGGAGAAGCACC AGGCCG-CGCGCGACATGGTGC TGC GCGCCCTGCCGCGCGGCGGCGG CTTTCGCGAAGACGA  67 217
CXD78_RS12240 2524968 .. 2525024 + -11.5  -3.65812   AGGTCCGGCGCACGC GCCCGGCCTG-AG-GCGGCCGG-ACGCC GCGC GGCTTGCCGCCCGGGCTACTGGCCGGGC TTCTGTTCGGCAGCC  75 15
        mobA NONE
CXD78_RS12305 NONE
        mobB 2538601 .. 2538613 +  -3.3  -4.36914   GGCGGCGCATTGCCG                TCGGC CGC GCCCA                TTTTCTGCCACAGCG  67 162
CXD78_RS12340 NONE
CXD78_RS12345 NONE
CXD78_RS12350 NONE
CXD78_RS12355 2547839 .. 2547863 + -11.3  -3.57792   ACCACCCGCACGCCG          GCCTGCGCCAG CTC CAGCCGCAGGC          TTTCGCAATACGTCG  70 398
         tal 2554119 .. 2554129 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS12385 2555168 .. 2555178 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS12390 2556452 .. 2556465 +  -4.5  -3.28924   CCAGCGCCGCCTGCA               CCG-GC TGG GCGCGG               TTGTGCACCGAGATG  49 295
        smpB 2563245 .. 2563258 +  -5.9  -2.71364   CGCGATTCCTGATGC               GGTCG CGGC CGGCC                TGCTTGGCCGCGTAC  47 29
CXD78_RS12450 2566672 .. 2566693 +  -8.6  -4.56597   GTTGACGTCGGCGTT           GCGCGCGG CGTTGA CCTCGCGC            TTTTTCAGCACGCCG  83 258
CXD78_RS12460 2567769 .. 2567789 +   -14  -4.77036   GCCCGGCGAAAAAAA            GCCTCGCC GCAAG GGCGAGGC            TTTTTCCTGCTGCCG 100 52
CXD78_RS12470 2571428 .. 2571438 +  -2.4  -3.16492   GCGGCAGCACTGCCT                 CCAG GTC CAGG                 TGTTCGTGGATATGC  43 291
         map 2588316 .. 2588333 +  -5.5  -2.87132   GGCCTTCGTGACACG             GCCGG TCGAAATC CCGGC              TCTCTGACCCCCGCC  46 1
CXD78_RS12560 2591362 .. 2591377 +  -7.5  -3.30124   GTTCACGCCCGAGAT              GGCGC AGGCGC GCGCC               TTCTACCCGCTCACC  56 420
CXD78_RS12570 2592241 .. 2592297 + -31.9  -2.71364   GGCGTTGCGGCGCAA CGCCTGA-CGGC-C-GCGCGGCCGGCTT GCGC AAGCCGGCCGCGCCGCGCCGGTCAGGCG TCGTTGGCCGCGTAG 100 19
CXD78_RS12595 2597268 .. 2597280 +  -3.3  -4.57569   CCTTTACCCGGCCAA                TAGGC GGC GCCAA                TTTTTGACAGAATCG  71 117
CXD78_RS12600 NONE
        fliS 2599115 .. 2599140 +  -3.1  -4.82901   CACCCTGCGCCTGCC         GTTCCGGCCTG AAAC CAGGAAGGCAC          TTTTTGTCCAGCCGC  75 14
CXD78_RS12610 NONE
CXD78_RS12615 NONE
CXD78_RS12620 NONE
CXD78_RS12625 NONE
CXD78_RS12630 2601775 .. 2601824 + -11.4  -3.53444   CGGCCCAGGCGCCAG TTCG-GCCTCGGTG-GCGCCGCCGC TTT GCG-CGGCGCGCACCACGGCGCGCA TTTGCGACAGCATGC  69 276
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ 2607589 .. 2607640 +  -4.4  -3.30441   CGCCCTGACGCCTGC GCCGGG-TCC-GGCCGCGCAAGGCGGC CCG GCCGCC--GC-CGGCAAGGGTCCCAGC TTCTCGCAAGTGCTG  49 96
CXD78_RS12670 2609953 .. 2609970 + -10.5  -2.52464   TTTCGCCCTGTTTTT             CGCCTGC CAGC GCGGGCG              TGAATTGCGGCAGAA  56 308
        fliL NONE
        fliM NONE
        fliN 2612111 .. 2612125 +  -5.6  -3.14564   ACCGCTTGAACAGTC               GCCGCT AAA AGCCGC               TTCATGACCGAATCC  49 18
        fliO NONE
CXD78_RS12700 NONE
CXD78_RS12705 2613567 .. 2613582 +  -5.4  -2.78712   TGTCCTGAACGCGCC              TGGCCGC GCC GCG-CCA              TGATTGCGTTCACCA  45 33
        fliR 2614498 .. 2614516 + -17.4   -5.1971   CACCAGTTTTCTCAT             GGCCGCGC CCA GCGCGGCC             TTTTTGCTTTTTCCT 100 153
        flgA 2632767 .. 2632782 +  -5.4  -2.79004   CCCCCATCGGGCCGG              TC-CCGC GCA GCGGAGA              ATATTTTGAAGATCC  45 131
        flgM NONE
CXD78_RS12800 2633644 .. 2633660 +  -9.3  -3.01712   CATCAAGGCCGCGGG              CGCCAGC CGC GCGGGCG              TCTTGCGCGCGCCCG  57 91
CXD78_RS12820 2640637 .. 2640691 +  -7.7  -5.35365   CTGGGGCGCTGGCAA GTAGAAGTCAGCGGGAGCCAGTCCCC GTTC GGGGACAGGCTCCCGG-GTATATTGC TTTTTCTTATGTTTT 100 102
CXD78_RS12825 NONE
CXD78_RS12830 NONE
CXD78_RS12835 2643144 .. 2643154 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS12840 2644282 .. 2644313 +  -5.7  -3.30214   CCGGGGCCTGGATGC      CGGCGCGGGCCGCC TGCCT GG-GGATGGCGCCG      TTGATGTAGTCGATT  52 149
        leuD NONE
CXD78_RS12870 2650981 .. 2650991 +  -8.2  -2.57132   AGCGCCACCAGCGCC                 GGCG CCG CGCC                 CTTGTAGGCCACCGC  51 446
CXD78_RS12900 2657964 .. 2657974 +  -2.4  -3.68351   GCCGATATTGAGGAT                 GGCC AGC GGCG                 TTTCGATCATGGCCC  53 513
CXD78_RS12915 NONE
CXD78_RS12920 2663703 .. 2663735 +  -5.4   -3.4072   GCCGCGTACTCGCCC     TGCAGCCGGGCGCCC AGGC GGGCGGTCAGC-GCG      TTGTCGTCGCGGATG  52 281
CXD78_RS12945 NONE
        clsB 2670009 .. 2670055 +  -9.8  -3.19602   ACACCGCCGGCGCCG CCTGGGCGCCTGGCTGGCCGGC ATC GTCGGCCTGGCCGTCGTCGGGG TATTGCTGTACCAGG  62 60
CXD78_RS12970 NONE
CXD78_RS12975 NONE
CXD78_RS12980 2674207 .. 2674229 +  -8.3  -2.87132   CGCCGCTCGTGAGCC           CCGCGGCGC CCGCC GCGCTGCGC           TATGTGGACGACAGC  54 29
        treS NONE
        glgB NONE
        glgX NONE
        treZ 2687594 .. 2687645 + -10.5  -3.04144   ACCGCCGACACCCTG GCGCGCTGGCGCGCCCGGCCTCC CGCCAT GCTGACCGCGCGCGCCGGCGGGA TGTTGCGCGTGCCCG  60 188
        treY 2691485 .. 2691524 + -15.6  -3.14132   AATGATGCGCAGGGC  CGGCCGCAGCGCCCGCGCG GCC TGCGCCAGCGC-GTGGCCG  TTCATGCCGGGCAGC  78 169
        ptsJ 2697491 .. 2697507 +  -4.3  -3.09908   ACATCAACCAGGCGA              CTTCCCA TAA TGGGGCG              GTTATTTTCCGAACG  47 55
CXD78_RS13045 2698167 .. 2698177 +  -5.4  -3.03798   CTGCCCATCGGCCGG                 GTGA GCC TCAC                 ATTCTTTCTCGCCCT  47 186
CXD78_RS13050 NONE
CXD78_RS13055 NONE
CXD78_RS13060 2700387 .. 2700408 +  -9.4  -3.01712   CCGCACCGCCGCCTG           GGCCGCGCC ATGGC GGC-CGGCC           TGTTCCACCGACAGG  57 396
CXD78_RS13075 2702009 .. 2702031 + -20.6  -5.41746   GCCGCGCCGCGATCG           CAGGGCCGCC TCG GGCGGCCCTG           TTTTTTTGGACGCTT 100 51
CXD78_RS13080 2702844 .. 2702866 + -10.5  -3.34398   GTGACCGCGCCCAAT           TCGACGGCG GCGCG CGCCGGCGA           TGTTTCCGCGCCGCG  63 273
CXD78_RS13085 NONE
CXD78_RS13090 2704349 .. 2704371 +  -3.3  -3.24747   GGCATCGGCCCGCCT           CGCCGGG CCCTGCCCA CCCGGAG           TTCATCATGTCACGC  46 89
CXD78_RS13095 2705295 .. 2705345 +  -5.6  -3.42996   ATGGTGGGCTCGATG CCCGCGTCGCGCAGCAT-TTGCAGCA CGT TGC-GCGACGTGCTGCA--ACGCGGG TTGTGGTAGATGGTG  52 403
CXD78_RS13120 2710182 .. 2710195 +  -2.3  -2.62184   TCCGGGCGCGCGTCC               GCTCG ACCT CAAGC                TGGTCTGACGCGCAC  38 4
CXD78_RS13125 NONE
CXD78_RS13130 NONE
CXD78_RS13135 NONE
CXD78_RS13140 2712343 .. 2712355 +  -2.6  -2.78384   GCGGTGGCCGTGGTC                GTGC AGAGG GCGC                TGTCATGAACCGCAC  38 5
CXD78_RS13145 2713112 .. 2713128 +  -4.4  -3.10641   AAAATTCTCCAGCCC             CGAGTGG ACCG CC-CTCG              TTCCCTGATGCCTTC  47 1
CXD78_RS13150 2714008 .. 2714046 + -10.4  -3.53012   GCGCCGGCGGCGGGC  GCCGCCGAACAACGCGGC GCAAG GCC-CGTTGTTCG-CGCC  TTTGCCGCGCGCCGG  67 41
CXD78_RS13155 2714645 .. 2714657 +  -4.7  -3.02739   TGTCGCCACGGACGC                CGCGC GCG GCCCG                TCTGTATCCGTTCCC  45 82
         psd 2715639 .. 2715695 +  -2.2  -2.74192   TTCGCTTTATCGATA CATGAGGGCTTGCTAGATTGCGGC CTGGCCATC GCCGCCGTTTCTGGAGCTCTCATG TCGTCTTCCGCACTG  38 56
CXD78_RS13165 2717273 .. 2717305 +  -5.6  -4.31837   CGGGTCGTTGGGCAC     GGCGATG--GTCGCGC CCT GCGGGATGGCATCGCC     TTTCTTCAGTTTCTT  69 461
CXD78_RS13185 2719513 .. 2719570 + -12.5   -3.3514   GCCATGCCCGTCGTG CTGGCGCTGACCGCGT-CGCTGGGCGGG CAG CGCGCCCTGCGCACGCAGTATCCGCTAG TTGTGAACTGTCAAT  73 193
CXD78_RS13205 2722860 .. 2722893 +  -4.5  -3.84451   TTGCCGCAGCGGCCA     TGGACGAGTTGCTCGG AGC CC-AGTGTCTCGACCA     TTTCGATTTCGGCGG  60 296
CXD78_RS13230 2728104 .. 2728124 +  -5.3  -2.53263   CGCCGGTCGCGCGAG            CTGGCCGAG GAG TTCGGCCGA            TGAGTTCGGCGTCGC  44 2
CXD78_RS13235 2728783 .. 2728793 +  -3.2  -3.53811   CAATTCACGGCGTCA                 TGTG TCA CGCA                 TTTCGACGGGGTCCC  49 103
CXD78_RS13240 NONE
CXD78_RS13245 NONE
CXD78_RS13250 2731187 .. 2731223 +   -13  -2.71791   TCAACGTACGCCCAG    GTTTCCGGCTCCGG GTCGCACTA CCGGAGCCGGAGCC    ATTTGGAGCACGAGT  67 72
        livH NONE
        livM NONE
CXD78_RS13265 NONE
CXD78_RS13270 2735115 .. 2735125 +  -8.2  -3.60098   AGCACCACGGCATCG                 GCGC CGC GCGC                 TTTCAGGTGGGCGAT  63 267
CXD78_RS13285 2737242 .. 2737280 +  -4.4  -3.53012   CGGCGCTGCACACCA   GTTGGCCTGCCACGATGT AGA ACATCGTGGTCAGCATGC   TTTCGCCGCGGCCGA  52 338
CXD78_RS13295 NONE
        trxA 2745424 .. 2745465 +  -2.1  -4.06864   CCGCGCATTCCCCCC TGATTCCCGC-GCGGGCC CGTCCGT GGCCCGCCGCCCGAACCC TTCTTCTTATCTCCC  58 66
         rho 2746781 .. 2746798 + -14.1  -4.54727   CACGCCCGTCCCGAC             CCCCGGC CCGC GCCGGGG              TTTTGCTTTGCGGGC 100 54
CXD78_RS13335 2753364 .. 2753376 +  -4.7  -4.09243   TAACGGTTTTTCCCC                GCTGC AAA GCCGC                TTTTCACGCCATGTC  62 38
CXD78_RS13340 2754212 .. 2754224 +  -6.2  -4.11501   ATATTCACCGCCAAC                CCGC CGCGC GCGG                TTTCCTTGTATTTGG  69 191
CXD78_RS13350 2757560 .. 2757599 + -11.5  -3.05384   GATACACCACGATGC GCGATGCCTG-GGC-GGGCG CGC CGCCCTGCTGCAGGCG-CGC TTCCATGGCCCGCAC  62 181
CXD78_RS13370 2762732 .. 2762765 +  -5.2  -3.14963   CACGGCGCCGGCCAG     GCCCTAGACTGCCA CGCAAT TCGCAGTCCAGCGC      TTCACTCGTTATGCC  49 133
CXD78_RS13375 NONE
CXD78_RS13380 2763969 .. 2763979 +  -4.6  -4.07568   GAGGCGGCCGGCACG                 TGCG TTA CGCG                 TTTTCGCGCGAAGCG  62 92
CXD78_RS13425 2775564 .. 2775587 + -11.7   -4.8622   CAAATCGTTGATCAA          GGCCTGGCA CATCGC TGCCGGGCC           TTTTTCATTGGCGCG 100 39
CXD78_RS13435 2778220 .. 2778236 +  -5.7  -2.64472   TGATGCGCAGGATGC              CGCGGTC ATA GGCCGCC              TGGATTTCCGACATC  45 268
CXD78_RS13445 2779837 .. 2779847 +  -5.4  -5.69473   TGCACGTCCCCCATT                 TCTC ATC GAGA                 TTTTTTTCTGATATC 100 300
CXD78_RS13455 2780011 .. 2780032 + -17.3   -4.8622   GGCACCAGAAAAAAA           GGGCAGCCC ATCC GGGCTGCCC            TTTTTGCTTGGGCGC 100 34
CXD78_RS13475 2782964 .. 2782978 +  -4.2  -2.73124   CCGGGCAGTTCGTTA               GACTAG GAG CCAGTC               ATTTCAACCCTAAAC  41 71
        kynB NONE
        kynA 2784643 .. 2784679 +  -3.5  -3.40403   CGTGCGCCGGGCTGC    TTGCCCGGCCTGGCTGG CGA CCCGCTAACCTGGGAAA    TTATCATGAAAGAAG  49 152
CXD78_RS13490 2784984 .. 2784999 + -10.4  -5.86061   GAGGCGCACCAGAAA              GCAGCC TGCG GGCTGC               TTTTTTTTCCTCGCG 100 58
CXD78_RS13495 NONE
CXD78_RS13500 2788328 .. 2788345 +  -6.9   -3.9777   GTGGGCACCGTGATG             CGCGCCG CTCT TGGCGTG              TTTCTCGCTCTTGGC  66 147
CXD78_RS13520 2792645 .. 2792661 +  -9.3  -2.73364   TGGCCGCCAGCCTGG              GCACGCC GGC GGCGCGC              TGATTACGGTGACGG  55 6
CXD78_RS13525 2793486 .. 2793520 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS13535 2795330 .. 2795362 +   -17  -3.01791   ACTCGGCCAGTTCCA     GCGCCCAGGTGCGGG TGCA CCCG-ACCAGGGCGC      TCTTGGCGGCCGAAT  82 290
        hpnC NONE
        hpnD NONE
CXD78_RS13560 2800651 .. 2800663 +  -4.7  -2.93073   GAAGACTCCTCAGGC                CGGCG TCG CGACG                TGGTTCTTGAGCCGG  44 450
CXD78_RS13585 2803777 .. 2803787 +  -3.2  -3.45366   TCATCCCGGTCGTGC                 TGGC ACT GCTA                 TTCATTCATTGACCG  48 3
CXD78_RS13590 NONE
CXD78_RS13595 NONE
CXD78_RS13600 NONE
CXD78_RS13605 2807726 .. 2807754 +  -6.6  -3.28712   CCGTGGCCGGATCGC       GCACGGCCTGGGC GAAC GCCTGGGCCA-GC        TTGTCGCGCACCGCG  52 184
CXD78_RS13620 2811573 .. 2811585 +  -4.7  -2.72344   ATGGACAATCTCCCC                GGCCG CAG CCGCC                TGCTTGCACATCCCG  43 499
CXD78_RS13640 2814754 .. 2814778 + -13.6  -3.30771   CCCTACGGCCAGTTC         GGTGCGGC-CG CCAT CGAGCCGCACC          TTGTGCCGGATGTCG  74 251
CXD78_RS13670 NONE
CXD78_RS13675 2825299 .. 2825330 +  -2.7  -3.14931   CGAACCGCCAGCCCT      GCGGGCGGACCTC TACCTC GTGGCCCGCCGGA       TTCATGCGGGCTGCC  43 364
CXD78_RS13710 2828754 .. 2828777 +   -16  -3.21416   TGCCGCCTCGGGATG          GCGC-GCGCGC CAG GCGCGCAGCGC          TTCCTGGTAGCGCTC  80 66
CXD78_RS13730 NONE
CXD78_RS13735 2832363 .. 2832390 +   -14  -4.56597   CTGAGCGCAACCCGA        TCGGCGGCGGGC CCGC GCCCGCCGCGGC         TTTTTCGACAACCAA 100 37
CXD78_RS13740 2833274 .. 2833313 + -11.5   -2.9162   CCTTGGCGCGCCATC CTGCCGCGGCGTGCGCC CCCACCAA GGCGC-CGCCGTG-CAG  TCGTTTCCGGAGTTC  63 69
CXD78_RS13745 NONE
CXD78_RS13750 NONE
CXD78_RS13755 2835502 .. 2835534 +  -5.3   -2.9296   CCGCGGCGCCATGAA      CCGGCGCATGGCGGC GGC GCCGTGGGGCGATGG      TATGGTTGGGCTTTC  46 65
CXD78_RS13760 2836785 .. 2836832 + -14.1  -3.61517   GCACCGCGGCCGCCT TGCGC-GGCC-ATGGCGCGCGCG CCCG CGCGTGCGCCGGCGGCCCGTGCG TTATTCGACACAGGT  78 300
CXD78_RS13765 2837747 .. 2837761 +    -7  -2.85668   GGATGCCTTGGCAAC               GAGCCG GCG CGGCGC               TATGGTATGCGGATA  50 53
CXD78_RS13780 2841021 .. 2841041 + -10.3   -3.6502   TGCTAGACTTTTCCG            TGGGCGGCG ATC CGCCGCCGG            TTTCCCTAGGAGGTG  70 70
CXD78_RS13785 2841550 .. 2841573 +  -7.4  -3.06302   GGCCCACGGCCGGGC          TGCCGCGTTGC GCC GCGG-GCGGCA          TTCCCTGCAGGTCCT  52 162
CXD78_RS13815 2847614 .. 2847636 +  -6.8  -3.29144   CGATGCGTTCGCCTT           CGGCCGCGTC GAG GGCCAGGCCG           TTGTAGCGGCGGTCG  52 305
CXD78_RS13825 2849628 .. 2849646 + -10.2  -3.44051   GGGGGCCGCAGGCTT             GGCGCCCA TCA TGCGCGCC             TTCTCGTAGTGGAAC  65 297
CXD78_RS13855 NONE
CXD78_RS13860 NONE
CXD78_RS13865 2858133 .. 2858182 +  -8.4   -3.9392   GCTGCGCCTGTACGG CGGGAC-GC-GCGCCGC-CGGGCGC TGA GCGCCAGCGCGGCGCGGCAGGCGGG TTGTTTACACTGGAG  70 1
CXD78_RS13870 2858841 .. 2858875 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
        bamD 2869870 .. 2869898 + -21.1  -4.08064   ACTCGCGCAGTCCAA        GGAAAGCCCGGCC CCA GGCCGGGTTTTCC        TTTTGCGCGGCCGTT 100 45
CXD78_RS13940 2874534 .. 2874570 + -27.4  -2.71364   AAGCGCTGATCGCAA   CGCAGGCGCCGC-CCCG TCAT CGGGTGCGGCGCCTGCG    TCGTTGCCCCGATCC 100 32
CXD78_RS13965 NONE
CXD78_RS13970 2879268 .. 2879278 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 91
CXD78_RS13975 2880768 .. 2880786 +  -8.9  -3.28924   GGTATCGATCTGGCC             GGAAAGC AGCGC GCTTTCC             TTGTCGGCCACCGTG  59 511
CXD78_RS13985 2882378 .. 2882395 +  -2.5  -3.58343   ACACGACCGAGCCGG             CCAGCGC CTGG GCGCGGA              TTTCGCGATGCTCGA  50 376
        mdeB 2894739 .. 2894776 + -20.6  -3.06796   CCTGGCAGTCGTGAC   GGCCGCATCGGCCGGG ACGTGG CCCGGCCGATGCCGTC    TTCGCTGCGGTGCAG 100 27
CXD78_RS14025 2897322 .. 2897339 +    -4  -3.04144   GGCTCCATAACTCTT             CTGGCG CCAAGA CGCCCG              TGTTACCCATGCAAA  44 173
CXD78_RS14030 2898006 .. 2898016 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS14040 2899358 .. 2899388 +  -6.8  -3.65046   GCGCTTGGTCAGGAA      GCGCATGCGCCGG TCGATT TC-GCGCAGGCGC       TTCTTGCCGTACAGG  57 363
CXD78_RS14100 NONE
        recJ 2918941 .. 2918952 +  -7.2  -3.65812   GAGCACGCCGCCTGA                GGGC CGCC GCCC                 TTCTGTTACAAACCG  61 26
CXD78_RS14110 NONE
CXD78_RS14115 NONE
        lysS NONE
CXD78_RS14125 NONE
CXD78_RS14170 2934244 .. 2934262 +    -8  -3.53012   GCCAGCATCTGCCGC             GTGACGGC ATC GCCGCCGC             TTTGCAGCAAGGAGG  58 170
CXD78_RS14190 2938147 .. 2938167 +  -2.5  -3.31144   GCCCCGGGAGGAACA            TCATGTTGA AAG TCAGCGAGA            TTCTGCGCGTCAAGG  44 60
CXD78_RS14195 2938656 .. 2938666 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 74
CXD78_RS14200 2939864 .. 2939889 + -16.9  -3.12595   TCACGCGCAGCGGCA         CGCCGCG-CGCA ATC TGCGTCGCGGCG         TATTGCATCATTGCA  80 219
CXD78_RS14210 NONE
CXD78_RS14215 2942999 .. 2943009 +  -4.6  -3.30124   GCCAGGCGTTCGGCC                 CGCT GAT GGCG                 TTCTGCGCGATAGCG  49 374
CXD78_RS14240 2945836 .. 2945851 +  -4.6  -2.57132   CAACTTGTAACGGTT              GGCTGG CCAT CCACCC               CTTATCCAGCGGCGC  42 53
CXD78_RS14245 2947929 .. 2947945 +  -2.2   -2.8372   TACGGCGGCCGCGGT              CTGAGC CTGCT GCTAAG              GTTTCATGGCAAATA  40 22
        folP NONE
CXD78_RS14255 2950171 .. 2950190 + -16.4  -5.06414   CCGGACCTGCCCGAA            GGCCCGCC TGAT GGCGGGCC             TTTTTGTTGCGCGGG 100 48
CXD78_RS14260 2951292 .. 2951319 + -21.4  -3.48276   CCGACGGGGTGCTGG        GGTGCCTGTCCC CGCG GGGACAGGCACC         TTGTATCGGGGCAGG 100 154
        ppk1 2955222 .. 2955241 +   -15  -5.09259   CGGCCCGCTGCCGCC            TGGCCGCC CGCG GGCGGCCA             TTTTATTTTGAAATA 100 43
        pstS 2956482 .. 2956503 + -10.1  -2.52464   CCTGGCCGGACCAGT           GAACGGCGA GCGA TCGCCGTCC            TGACTTCGCGGGGCG  56 68
        pstC NONE
        pstA NONE
        pstB 2959274 .. 2959308 +  -7.7  -3.49858   CGGAAGACTACATCA    CCGGCCGCTTCGGCTG AGGC CGGCCGGCG-GGCCGA     TTCTGGTATAGTTGC  60 9
CXD78_RS14295 2959501 .. 2959541 + -11.2  -3.86346   TAGCCGCTCCATGCA TGTCAAAGCCCCGATACGG ATTT CCG-GTCGGGGCTTTCGCG  TTTCTGCGGGCGTGC  77 119
CXD78_RS14300 2960687 .. 2960725 +  -3.8  -3.32844   TCGGGGTCGGGGTGC  CGCCCGGCGTGCTCG ATGACATAGG CGAACAC-CCGGCCG   TTCTCGCGTGCGAAC  47 104
CXD78_RS14325 2967091 .. 2967101 +  -8.2  -3.53091   CATCAGCCCTTGCGC                 GCCC ACC GGGC                 TTTCGGCAAACGGGT  61 336
CXD78_RS14340 NONE
        cobA 2973129 .. 2973169 + -14.7  -3.32498   TGCCCAGGCCCAGTT CGGCG-CGCGTGCCGCGC AGTTCG GTGCGGTGCGCGATGCCG  TTGGTGTGTACCGTA  79 220
        queA NONE
CXD78_RS14395 2981965 .. 2981991 + -12.3  -2.70932   GCGCGGGGTCGACTA        GGGCCG-GCC-CC CCC GGCGGCGCGGCCC        TCGTTGCGCCGCGCC  65 25
        yajC 2982465 .. 2982483 + -17.4  -3.65046   TGTAAGGTCACACAA             GGCCCCGC GTG GCGGGGCC             TTGTTCCGCTCACCC  91 36
        secD 2984430 .. 2984455 +  -2.5     -3.37   CCCTGCCGCCCGCCG         TCC-TGATACGC AAG GCGAAACATGGA         ATTTTTCCGGATTCA  46 54
        secF 2985409 .. 2985438 + -22.2  -5.81412   CCCGGTAGTAAAAAA       CCCTGCCCGGCC AAATGC GGCCGGGCAGGG        TTTTTTTTACATGCA 100 48
CXD78_RS14415 2987113 .. 2987136 +    -8  -3.61398   CGTCGTCAAGCAGCA          CTTCGGGGCG CGCG CGCCACGACG           TTCTTGAGCACCCAG  60 403
        miaB NONE
CXD78_RS14430 NONE
        ybeY 2990600 .. 2990635 +  -5.3  -3.31905   GCGCCGCGCAGATTG    GC-GCCAATGCGCCCC AAATC GGGGAACAATGGCCGC    TGTTGTATGCAAAAT  51 43
CXD78_RS14440 NONE
CXD78_RS14445 2993665 .. 2993704 +    -5  -3.53444   TAGACGATGACGCCG GTGTCGTGG-CTTGC-GC ACCAGG GCAGCAGGTCCGCGGCGC  TTTCGCGGCGGATGG  52 440
CXD78_RS14455 NONE
CXD78_RS14460 2994766 .. 2994779 +  -8.1  -2.80398   GGTGTAGAAGTTACG               CCGCT GCGG AGCGG                TAGTTCAGTTGGTTA  51 54
CXD78_RS14465 2994864 .. 2994885 + -14.5   -5.7946   AAAAAATTCCGAAAA           GCCAGTTGC GTAA GCAACTGGC            TTTTTTTCTTCCCGG 100 40
CXD78_RS14470 2996311 .. 2996330 +  -4.8  -3.28712   GCGAATTGGCTTCGT            CGCGGCGC TCCT GCGGCACG             TTGTCCAGCAGCACC  49 235
CXD78_RS14535 3008489 .. 3008523 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 493
CXD78_RS14545 3009762 .. 3009774 +  -4.7  -2.90496   GCCCAGCCGTCCGCC                GCAGC ACC GCCGC                TGATTTCCCGCGGGC  44 10
CXD78_RS14550 3010177 .. 3010204 + -11.2  -2.75074   GCCCCGATGAAGATG        GCCGGATCGACG CGCG CGTCGTTCAGGC         TGATGTTCCAGTGCA  59 70
CXD78_RS14590 NONE
CXD78_RS14595 3017417 .. 3017427 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 238
CXD78_RS14600 3018633 .. 3018650 +    -4  -3.60805   CCGCGCGCCACGCCG             GCGGGC AGGACG GCCCGG              TTTGCGCTACGCTGT  51 44
CXD78_RS14605 3019382 .. 3019403 +  -8.1  -3.64599   GGCGCCCCGGTCACA           CGAATGTTGC ACC GCAACA-TCG           TTTGCGGTGTAATAG  63 48
CXD78_RS14610 NONE
CXD78_RS14615 NONE
CXD78_RS14620 NONE
        fabI 3025228 .. 3025239 +  -7.2  -3.33483   GGAATCGGCACCTCG                GCGC CGCG GCGC                 TTCATGATTTCGATC  55 470
CXD78_RS14645 3030158 .. 3030168 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS14650 3031179 .. 3031192 +  -3.1   -4.2074   CACAACTAGCTGCCC               GGTTT GAAG AAGCC                TTTCTCTCTTGGGAG  63 32
CXD78_RS14655 3032444 .. 3032470 +   -13  -4.65895   CCATGGCAGTACGTA        CGCCCGGCCGC CTCACC GCG-CCGGGCG         TTTTTGCGTCCGGCG 100 79
CXD78_RS14675 NONE
CXD78_RS14680 NONE
        folD NONE
CXD78_RS14690 3044507 .. 3044542 +   -19  -2.59431   TGCAAGCCTGACCTC    TCAGGTGCCTGTCCCC GCAG GGGGACTGGCACCTGC     TGACTTCTGGACGCC  87 30
CXD78_RS14695 3045310 .. 3045327 + -14.1    -3.965   ACCCAATGATCCGGA             CCGCGCC CCAG GGCGCGG              TTGTTGCTTTTGCGC  84 32
CXD78_RS14700 3045719 .. 3045749 + -25.6  -4.07568   TCGCCACTGCGCAAA       CAGACAGGCCGGCA TCT TGCCGGCCTGTCTG       TTTTGGACGGCCGCG 100 44
CXD78_RS14720 3052210 .. 3052239 +  -4.3   -4.1822   CACCACCCGCAGCCC       CACCAG-TTCGC ACATGCG GCGAATCTGGCG       TTTCTTGCCCTCGCG  63 182
CXD78_RS14730 3053452 .. 3053480 + -10.2  -4.07885   CGCTGGCGCGCGCGC       CCGTCGCGCCGCG CTGA CGCCGC-CGGCGG        TTTTGACGCAGAATC  78 9
CXD78_RS14740 3056202 .. 3056218 +  -2.2  -4.42238   CGTCCGACAGGGTGA              CCTCGA CGCTC TCGATG              TTTTCCTTCAACTGC  68 234
CXD78_RS14750 3058645 .. 3058656 +  -7.2  -3.78953   CTTCCACTTGCTGCA                CCGG CAGG CCGG                 TTTCCTCCTGGGCCT  64 435
CXD78_RS14765 3061238 .. 3061258 +  -8.1  -3.01712   CCTGGTGTTGAAGCC            GGCGGGCCC CGA GGCCCCGGC            TCTTCGCGGACCACG  53 438
        mltB 3076880 .. 3076892 +  -4.7  -3.57144   AGATCTTCGGCATGT                AGGCC TCG GGCCA                TTTGCGGATGCCCGG  54 322
CXD78_RS14920 3094129 .. 3094149 + -18.3   -5.4505   GCCGCTACAATGAGG            GGGCCTCGC ATA GCGAGGCCC            TTTTTTCTTGCCGCG 100 52
        ubiG NONE
CXD78_RS14930 3095661 .. 3095683 +  -2.7  -2.77899   GCGGGCCCCATGCCC          GT-GCCGG CGCCACAC CCGGCCAC           TGATTGCTCCACCCA  40 59
CXD78_RS14935 NONE
        ssrA 3097485 .. 3097507 + -13.6  -5.85178   CAAGTATTTACCTAA           TAGCCAACTT CAA AAGTTGGCTA           TTTTTTTTGGCTGTT 100 57
CXD78_RS14945 3097752 .. 3097780 +  -6.9  -3.02471   GCGGGGCAAAATAGT        TTGTTAATGTGTA CTA TACACATTAAAAG        TGTGTATAGTACACA  51 19
CXD78_RS14950 3097983 .. 3098009 +  -7.9  -2.84298   GGTTTGAAGTGAGAC         ACAAGCCCCGA AGCAA TCGGGGCCTGC         TAGTTGTGAACTGTC  52 29
CXD78_RS14965 3099511 .. 3099548 + -11.3   -3.6682   TCCGACGCACCCAGC   AGAGAGCCCCGA-CTGGA CAA TCCGTATCGGGGCTCTCG   TTTGCGTGGGTAGCA  73 55
CXD78_RS14975 3101934 .. 3101968 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS14990 3104493 .. 3104526 + -13.1   -3.0497   GACGGCACTCCGTAC     ACGAC-CGCTTCGCGC ATG GCGCGCAGCGCGTCGG     TATTCCAGATACTCT  70 111
CXD78_RS15000 3107030 .. 3107040 +  -2.4  -3.02381   CGGAAACCAATTCCC                 CCAG ATG CCGG                 TCTATGGTGTTCTGC  41 119
CXD78_RS15005 NONE
CXD78_RS15015 NONE
CXD78_RS15020 3112051 .. 3112082 +  -5.6  -3.14132   TCAGGCGCAGGGCCA      GCGCCGCCACCGCG TCCT CCAGGTGGCGCGGC       TTGCTCGCCCCCACG  47 102
CXD78_RS15035 3115800 .. 3115819 +  -2.8  -3.53761   TTGACAAGCGCCCCC            GCGACGC CCAAGAT GCG-CGC            TTTCGCCGCCCCTTG  49 37
CXD78_RS15040 3116392 .. 3116426 +  -7.8  -2.58999   GCGTAAGTCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS15140 3136906 .. 3136917 +  -5.8  -3.53811   TATCGCGCCGCTGCA                CCCT GGTC AGGG                 TTTCGGGCAGATCGA  57 414
CXD78_RS15150 3138405 .. 3138452 +  -4.1  -2.71712   GATCGCCTCCTTGGG CGCTGCGC-GGCCG-ATGCGC-CG GCG CGCGCCCGTACGTCCAGTGTAGCG ATTTCGGCGCCGCGC  41 220
CXD78_RS15170 3141794 .. 3141828 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS15185 3145432 .. 3145447 +  -3.2  -2.87132   GGCTGACCGAGATGC              TGCTCG GTTC CGAGGA               TCTGTAAGGAGGCCA  41 3
        ilvN 3145955 .. 3145982 +  -8.2  -2.55074   GGATACTGAAAATCT        GACCGGCGCGCC TGGC GGCGCGCCACCC         TGCATTAGCATTCAC  52 24
        ilvC 3147095 .. 3147112 + -14.1  -5.79595   GCAGGCTGGTCCAGA             CGCGCCC CACG GGGCGCG              TTTTTTCTTTTCCGC 100 75
        pssA 3148166 .. 3148179 +  -8.1  -3.27022   CCTGGCGCACGCTGG               GCAGG CCGA CCTGC                TTGATCTCGGCTGGC  56 199
CXD78_RS15210 3148746 .. 3148769 +  -4.5  -3.63367   GGCAACAGCGTAACA          GGGCGCCCGG TTGTC TCGGG-GCTC          GTTTTTCTTGAAACC  55 28
CXD78_RS15215 3149130 .. 3149165 + -16.8  -5.04601   CTCCCCATGACGCAA    CCGTGGTCGGGGCGAC GCAT GTCGCAACGGCCACGG     TTTTTCATTTGTAAG 100 54
         pnp 3151376 .. 3151393 + -14.1  -4.66163   TTCCTGACGCAAGAA             CGGCGCC CGCG GGCGCCG              TTTTTGCGTCCGCAT 100 50
CXD78_RS15225 3152357 .. 3152391 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS15235 3154807 .. 3154830 +  -3.7  -3.73775   TCACATGGAAATCCT          TGGGGTCGC TGTAGC GCAGCCCCG           TTTCGTAAGGCTGCG  55 336
CXD78_RS15250 3156725 .. 3156757 +   -14  -4.66318   TAGCGCCAGCCGGAC      GGCGGGCGCGCCGG ATCGC CCGGTGCGCCCGGA      TTTTCTTGCCCTGGT 100 38
CXD78_RS15255 3157605 .. 3157617 +  -5.5  -3.02074   CGCCGCAGCTTAAGT                TTCCG TTC CGGAG                TCTGTAATGTCTTTG  47 28
        secG 3158080 .. 3158109 +    -3  -4.09685   TGCTAGAATGCCCGA      CTTT--CCAGGATC TTCG GATCCTGGTCGAAG       TTTTGCAGGATGCCG  59 35
CXD78_RS15265 3158266 .. 3158291 + -13.3  -4.91109   AAAGCCAGCAAAAAA         GCCCATATGCG TCAG CGCCTATGGGC          TTTTTGTCGTCCAGG 100 86
CXD78_RS15270 3161187 .. 3161212 +  -2.4  -3.58343   CAGGGCCCCGGCCTC         CCGGACCAGC AGTTGC GCCAGTTCGG          TTTCCCGATGCTCCG  50 123
CXD78_RS15280 3163412 .. 3163450 + -12.4  -3.87994   TCCTATCGGACGCGC  CTGTCCGCGGCGTAGCG TCCGTC CGC-ACGGCGCGGGCGG   TTTGTCGGCATCACT  81 11
CXD78_RS15285 NONE
CXD78_RS15290 3166414 .. 3166424 +  -2.4  -3.35679   GTCGGTGCTGGCCCT                 GCGC GAA GCGA                 TTCTCGATCGGGCCG  46 494
CXD78_RS15300 3168593 .. 3168621 +  -2.9  -3.86015   CCACCGCACGCCGAT        GACCGCGAGTTGG TGC CCAAAGCGAGGAC        TTTGTGGGACAGATA  56 91
CXD78_RS15305 3170089 .. 3170103 +  -5.6  -3.53091   GCTGCTGTTCCTCGC               GCAGCG CTT CGATGC               TTTGGCCGCACGCCT  52 374
        metC NONE
CXD78_RS15325 3174160 .. 3174218 + -18.7  -4.56597   TTCCGATTCGAGCAG GTCCG-GCGCCGCGGGCG-GCGCCGGTGG TTG CGTTCGGCCCGCGCCCGCGGCGCGTGGCC TTTTTCAACGAAGAA 100 66
CXD78_RS15330 NONE
CXD78_RS15335 3177304 .. 3177316 +  -3.3  -3.63627   CAAGGTCCGGTCCGA                CCCCA CCG TGGCG                TTTCGCATCTGAACG  53 1
CXD78_RS15360 3184702 .. 3184726 +  -5.6  -4.00042   TTGCAGCATGGGTTG         CGCGGCATGGC GCGG GCCG-GCCGCA          TTGTTTGATGGCGCG  63 63
         azu 3185416 .. 3185437 + -11.5  -2.62184   ATGTGCTCGGCCCGC           TCGACCCGC GCCT GCGGGCCGA            TGATCTCGCGAAACA  59 142
CXD78_RS15395 NONE
CXD78_RS15400 NONE
CXD78_RS15405 3196518 .. 3196531 +  -3.7  -4.35461   ACGCGGCGGCCTGAG               CGGGC GCGA GCCCC                TTTTCATCGTCTTGA  68 59
CXD78_RS15410 3197437 .. 3197459 +  -3.3  -3.38046   TGGCCAGCGGCTGGA           GGCGGCATG ATGCG CGTGCTGCA           TATTTCGGATACCCA  48 16
CXD78_RS15415 3198267 .. 3198281 +  -9.2  -3.14795   CGGATGACGCGCGCC               GCGGCG CGA TGCCGC               TGTTCGTGAACCTTT  59 34
CXD78_RS15420 3199260 .. 3199275 +    -6  -2.66326   CTTGCCGTCGCTGAA              CCGCTC CAGG GTGCGG               TCGATTTCCCGTTCA  45 207
CXD78_RS15450 3202982 .. 3203017 + -26.4  -4.24326   GGGCCTCGTGCCCGC    GCGAAAAAAGCCGCCC TTCG GGGCGGCTTTTTTCGC     TTTTGAATCATGTTT 100 86
CXD78_RS15455 NONE
CXD78_RS15460 3203988 .. 3204004 +    -5  -3.05384   TGCGCGCTGAACCAC              CGGCGC GGGCG GCGCGG              TTCGATCGCGCCGCC  45 31
CXD78_RS15465 NONE
CXD78_RS15470 NONE
        nuoE NONE
        nuoF NONE
CXD78_RS15485 NONE
        nuoH NONE
        nuoI NONE
CXD78_RS15500 NONE
        nuoK NONE
CXD78_RS15510 NONE
CXD78_RS15515 NONE
        nuoN NONE
CXD78_RS15525 3218134 .. 3218150 + -13.7  -5.78622   GCCGCTTCAGCGATA              CCGCCTC CAT GAGGCGG              TTTTTTTTCGCCTAC 100 50
CXD78_RS15530 3220668 .. 3220688 + -11.8  -4.98531   ACCCCGCCGTTCCGA            CGGCCTCC CGCAA GGGGGCCG            TTTTTCATTTCCGGC 100 52
CXD78_RS15535 3223147 .. 3223163 + -15.1  -6.09133   GCGCAGCAGGGAAAA              CCGGCGC ATT GCGCCGG              TTTTTTTTTGGCATG 100 49
CXD78_RS15540 3223995 .. 3224024 + -10.6  -2.65808   GAATTCGGCCACTTC       GCCGGCGGCCTG CCGGGT CAGGCCGACGAC        TGCGTTCTTGGCGGT  55 266
CXD78_RS15560 3228511 .. 3228540 + -23.7  -3.03006   CCGTCAAGTGTTCAT       GGGTGCCTGTCCC CGCG GGGACAGGCACCC        TATGTGTGGCTTACT 100 114
CXD78_RS15575 NONE
CXD78_RS15580 3234135 .. 3234145 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS15590 3235163 .. 3235194 +  -8.7  -3.61398   AGCTGGCGTGCGCTT      CGGCGTGGTAGCGC CCCAC GCGCT-CCACCTCG      TTCTTCGAACCCAGG  62 39
CXD78_RS15605 3239722 .. 3239732 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS15610 3240771 .. 3240792 + -10.1  -3.01712   CTCTACAATCGGCAG           CGCCCGG ACGTCGAG CCGGGCG            TATTGCCGGCCGCGC  60 60
CXD78_RS15615 3241914 .. 3241933 +  -4.4  -3.45571   GCCGATATCCATTGA            TGTATATA GTCA TGTATACA             TTGATATTTCCCCAC  51 162
CXD78_RS15620 NONE
CXD78_RS15625 NONE
CXD78_RS15630 NONE
CXD78_RS15635 NONE
CXD78_RS15640 NONE
CXD78_RS15645 NONE
CXD78_RS15650 NONE
CXD78_RS15655 3251185 .. 3251225 +  -3.6  -3.65046   TCGAGCGGCGGGCCG  CGCGGCGCCCGCCGCCGG CCCGT CCGGCGCCCGGCCAGGAG  TTATTACAATGACAA  54 44
CXD78_RS15660 3252094 .. 3252107 +  -5.9  -2.78935   CGAACCCGTGTGCTC               GCGGT TGCC GCCGC                TATACTGGCCGATAT  46 86
CXD78_RS15675 NONE
CXD78_RS15680 3256694 .. 3256705 +  -5.8  -3.01712   ACGGCGGCTTCTACA                TGCC CTGA GGCA                 TGTTCAAGCCAACAC  47 18
CXD78_RS15685 NONE
CXD78_RS15690 3258854 .. 3258865 +  -5.8  -3.93695   TTGCGCCAGCGGATT                GACC CGCA GGTC                 TTTCTCGCTGGTGAA  63 522
CXD78_RS15750 3274690 .. 3274709 +  -4.3  -2.71144   TTGATCTGCATGTAC            TCG-GCCA GGCCA TGGCGCGA            TCCTTCGCGGCCGTA  40 84
CXD78_RS15785 3284769 .. 3284794 +  -8.9  -3.70902   CGCGAACGCAAAAAA         GCCGACACCAC GTTT GCGGTATCGGC          TTTCGCTATGCGCCC  65 63
        rplU NONE
CXD78_RS15810 3288286 .. 3288307 + -17.3  -5.45802   TCCCCGGAACGGCGA           GCCCTGCCG CACG CGGCAGGGC            TTTTTGTTTTCAGGC 100 53
        obgE NONE
CXD78_RS15820 3290785 .. 3290807 +  -4.1  -3.13073   ACCAACCAACATGCC           GGACAAGCC CCTCC GATTTGTCC           TGTATTCCTGACCGT  45 62
CXD78_RS15830 3292499 .. 3292533 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 310
CXD78_RS15845 3293841 .. 3293864 + -10.2  -4.41348   TGGAATAATGCCCCT          GCCGCGC-CCC ACC GGGCGCGCGCC          TTTATTTCAGCGAGA  88 56
CXD78_RS15850 3296236 .. 3296246 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 183
CXD78_RS15855 3297268 .. 3297312 + -10.6   -2.8294   ATCGGCGCCGTGTTC CCACGCGCGCAGCGGGAGCGGC AGT GCCG-TAGCGC-GCGCGTGAGG TGCTTGTGCACCATA  57 43
CXD78_RS15865 3298947 .. 3298977 +  -6.2  -4.27584   GGCCGTTCCGTCTTA       GAGATTGGTAGTGG TAA TTACTTTCAATCTC       TTTTCGGTTAAACAT  70 135
CXD78_RS15870 3301593 .. 3301606 +  -3.7  -3.36803   CGTTCCGGCGCGCCT               GCAGG ACCA CCGGC                TTGTCGATGCCCTTG  47 217
CXD78_RS15895 NONE
CXD78_RS15900 3308190 .. 3308213 +    -3  -4.17556   GATGGTGACGGCGTA          GCCGGACACG CGCG CCTGTTCGAC           TTTCTTGCGGATCTC  61 285
CXD78_RS15910 3310675 .. 3310685 +  -6.8  -3.09516   ATCCACAAGGGGCGG                 CCGA TGT TCGG                 TTACATCCTGCGGCG  52 101
CXD78_RS15915 NONE
CXD78_RS15920 NONE
CXD78_RS15925 NONE
CXD78_RS15930 3315590 .. 3315600 +  -2.4  -4.41348   CGTCCCGGTGGACCC                 CGTG TAA CCCG                 TTTATTTCCCAGCCC  65 19
CXD78_RS15935 3317189 .. 3317228 +  -5.7  -3.54408   GACCGCGGCTTCCAG GAGTTCGG-CGTCGCTGTC GGCC GACAGCG-CGACCGAGCAG  TTCATTTCGCTGGGA  57 197
CXD78_RS15945 3318584 .. 3318594 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 121
CXD78_RS15950 3319633 .. 3319654 + -10.1  -3.01712   CTCTACAATCGGCAG           CGCCCGG ACGTCGAG CCGGGCG            TATTGCCGGCCGCGC  60 60
CXD78_RS15960 3320845 .. 3320872 +  -6.2  -2.79188   CGCCAGCGGATCGGG        CGTGAGCGTGCCG CGG CGGC-CGTTGGCG        TAGTTGCCTTCGATG  46 163
        lptD NONE
CXD78_RS15985 NONE
        rsmA 3328421 .. 3328459 + -10.3  -3.01712   GCGCCACCACCGGCA  CGCCGG-CGGCGCTGGC GATGCGG GCCA-CGCCGGCCGGGG  TCTTGCCGCGCAGCG  59 254
         pyk 3331345 .. 3331378 +  -5.2  -3.61398   GTTGAAGCCGTCCTT     GGCGCCGG-CGATGA AGGTC TCGTAGACCGGCACC     TTCTTCCAGGCGCCC  54 454
CXD78_RS16090 NONE
CXD78_RS16095 3347575 .. 3347612 +  -6.1  -2.66787   GCTGAGCGTTCGCGC   GCATCGT-CGCGCACGCC GCT GGTGGGCCCGGGCGCTGC   TCATCTCGCTGTTGC  46 36
CXD78_RS16105 3348860 .. 3348875 +  -6.2  -5.00616   CTATGCTCGCATACA              CTGTAT GTCC ATACAG               TTTTTTGGGCCACAA  86 294
CXD78_RS16120 3349675 .. 3349697 +  -7.6  -3.63991   CGAGCGCCAACAGCA           TTAGCGGCCG CAG CGGCGGCCAA           TTCTTGAGCGTCATC  60 278
CXD78_RS16240 3366265 .. 3366284 +  -4.2  -2.91274   GATCGGACCGAAGCC            GC-CGGCGA CCT TCACCGAGC            TATGCTTCAGCTGAG  43 161
CXD78_RS16285 NONE
CXD78_RS16290 NONE
CXD78_RS16295 3374667 .. 3374684 +  -3.3  -3.54424   ATCGAGGAAGAAGCG             GCG-GCGC TGC GCGAACGC             TTTCAGGGCGTCAAC  49 52
CXD78_RS16300 3375753 .. 3375768 +  -4.6  -3.01712   CAGCGCAAAACCAAC              AGTGCC CTGG GGCACG               TGTTGCAGAGACCCC  45 47
CXD78_RS16305 3376151 .. 3376166 +  -3.2  -3.94438   CACCCGACATCCGAA              GAAAGC ATAT GCTTGC               TATTTTGTTAGCATG  58 167
CXD78_RS16320 3379356 .. 3379379 +   -21  -2.60496   GGTAAGCAAGCGCGC          GGCCGCCGCG CTGG CGCGGCGGCC           CTGTTTCAGGCCGCC 100 36
CXD78_RS16355 3385724 .. 3385764 + -12.4  -2.73875   GCTGAGCGCGGGTGT CGCAGTGGCCGGCGCGCGC CCGG GCGCGCGCC-GCTTCAGGG  TCGTATTCCGAGGAA  65 36
CXD78_RS16360 3387209 .. 3387238 + -15.7  -3.01712   TGGCCTGACGCACGC       GGAGGCGGCGCGCC TCA GGC-CGCCGCGTCC       TCTTCCAGCCAGGGG  77 33
CXD78_RS16375 NONE
        recQ 3391663 .. 3391690 + -16.2  -3.14344   GGCGGTTGGCGATAC        GCGGCGTGCCGC GCGA GCGGCGCGCCAC         TTCGTGCGCGCCGTC  80 410
CXD78_RS16390 3393512 .. 3393530 +  -6.6  -3.40403   AATGATGCTACAGGG             GGCTGCGC GAT GCGTATCC             TTGTCATCGGCGGAA  55 90
CXD78_RS16395 3394635 .. 3394665 +  -6.6  -3.39784   TCCGCGCCCAGCTTG       CCGCGCATCTCCAG CAG CAGGCGCTCCGCGG       TCTTCTTGCCGATGC  55 228
CXD78_RS16430 3400437 .. 3400490 +  -6.5  -3.18264   CTATTCGCGCATCAG GGCTTCGATCTCGCGCGCCTGCACCG GCA CGCCGCGGGTGA-TGAGTTCGCAGCC TTCCTCGGTCACCAG  51 50
CXD78_RS16440 3403309 .. 3403333 + -14.3  -2.87132   CAGAGCACCCATCTG          CCGCATCCTGT CAT GCAGGGTGCGG          TATGTCCGACGCGCA  71 218
CXD78_RS16445 3404047 .. 3404061 + -11.4  -2.91274   TAGCGGTCAATGAAG               GGCTGC AAG GCAGCC               TGTCGTTCGGCTGAG  61 215
CXD78_RS16455 3406106 .. 3406117 +  -2.2  -3.53566   TGCGGGTTTTGGCAT                CGGA CCAG TCTG                 CTTTTCTTCTTGGCT  48 224
CXD78_RS16460 3407328 .. 3407366 + -18.8  -2.79831   GCGCGTCGTCAACTA   CAATCAGGCGGCGAGGCG TCG CGCCTCGCCACCTGCTGG   CTGTTTTCGGATGAC  87 58
CXD78_RS16465 3408271 .. 3408303 +   -10  -3.53012   TGAGCGCGGCTTCGA     TACC-CGGCCTTATT CCGG AATCAGGCCGTGGTA      TTTGCGGCCCAGGGC  67 38
CXD78_RS16475 3410740 .. 3410759 + -11.4  -3.21354   TGGATGCCGGCAGCG            TTGCGCGG CCAG CCGCGCGA             TTGCTGGCTGTATGC  66 53
CXD78_RS16500 NONE
CXD78_RS16505 3414858 .. 3414872 + -12.8  -4.27316   CTGCGCCAGCTTGCT               GCCCCC CAG GGGGGC               TTTTGCCTTGGGGCG  91 69
CXD78_RS16510 3416619 .. 3416637 +   -11  -3.13403   CGCCTGCACCAGCAG             CGTCGGGA AGT TCTCGACG             TCTTCCTCGCCCAGC  64 190
CXD78_RS16520 3417746 .. 3417756 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS16525 3418771 .. 3418796 +  -9.7  -5.00616   TCTAGCGCATTGCCC         TGCACGCCCCCC CGG GGGGGGCCT-CA         TTTTTTCCGGAAACC  95 36
CXD78_RS16530 3419742 .. 3419770 + -12.3  -2.87132   TGCTCCTTGTTGCGG        TGCCGCATCGGCG CCG CCCCGGGGCGGCA        TCTATCCGCAACCAC  66 139
CXD78_RS16535 3420793 .. 3420805 +  -9.1  -3.71917   AGCCTGACTAACAGG                CGACC TGG GGTCG                TTTCCGGTTTCCGGT  68 183
CXD78_RS16540 3425262 .. 3425320 + -22.6   -2.5474   CGGCGGGCGCGCAGG CCTCG-CCCGATCGGCCGGCCGGGCCGCGC GAT GCGCGGCCCGGCCG-C--ATTGGGACGCGG CCTTTATTGCTTTTC 100 57
CXD78_RS16550 3427336 .. 3427356 +    -9  -5.40072   GCAGAGCTGGAATTC           G-GGCCACC TTCG GGTGGCCTC            TTTTTTTGCCCAAGG 100 95
CXD78_RS16580 3432172 .. 3432194 + -16.2  -3.34715   GACACCATGAGGGGC           GGCCGGCCCG GTT CGGGCCAGCC           TGTTTCCAGCACGTC  82 158
CXD78_RS16640 3443234 .. 3443282 + -13.8  -3.35679   CGCCGCAGGTCGTTG CGGCCCGGCGTGCCCGGTCCGC GCCGACA GCGG-CCGGGC-CGATGGCCCG TTCTCACTGGAAGGG  77 207
CXD78_RS16645 NONE
CXD78_RS16650 NONE
CXD78_RS16655 3446925 .. 3446974 +  -9.7  -5.07011   ACCGCATCGGCGGCG CGTATTAGGGCTGGCGGGCGTCC GTCG GGACGCCGCCCGGCCCGGGATCG TTTTTCCTTTATCTG  95 18
CXD78_RS16665 3450247 .. 3450298 +  -3.6  -3.14132   TTGCACCCTTCACAG CGCGCCCGA-GCCGCGCCCGGC GGCCAGCCAG GCCGGGT-CGGCGTAGGAGGCG TTGATGCGCGAGGCC  45 125
CXD78_RS16675 3452115 .. 3452131 + -13.7  -5.60993   GCGGCCCACGAAAAA              GCCCTCC AGC GGAGGGC              TTTTTTTCTGAGGCG 100 47
CXD78_RS16690 NONE
CXD78_RS16695 NONE
        ftsY 3460188 .. 3460213 + -20.5  -2.90496   GTTCGCGCCTGCCCG         CAACGCCGCCC GTCC GGGCGGCGTTG          TCATTTCCAGAACGG 100 46
CXD78_RS16770 NONE
CXD78_RS16775 NONE
        nusB 3470642 .. 3470674 + -11.1  -3.72695   GCGGCGCTGACCTTC      CGCGGGCGCGCCCGC GCG GCGCGTCCGTTCGCG      TTTGCTGGCAGGAGT  73 31
        thiL NONE
CXD78_RS16790 NONE
CXD78_RS16795 3472888 .. 3472931 + -14.4  -3.28745   CAGGCACCCTGAGAA GTCAGCGGGTGCCAGTCCCC CTTC GGGGACAGGCACCCGGGGGG TTACGTTCTTACCGC  75 119
CXD78_RS16820 3479861 .. 3479884 + -19.6  -6.06723   AGCTCCAATGAAAAA          CCCCGCCAGG CGAA CCTGGCGGGG           TTTTTTTTTGGGAAG 100 44
CXD78_RS16870 3490598 .. 3490608 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 192
CXD78_RS16880 3491647 .. 3491657 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS16885 NONE
CXD78_RS16890 3493610 .. 3493624 +  -3.4   -4.2828   ACTTCGCCGCCATCG               GGCAGC ACG GTCGCC               TTTTCCTGGATGCGG  67 245
CXD78_RS16905 3496379 .. 3496405 +  -2.8  -5.06103   CGGGAGCAGCGCGGC         TTGTCCGGCTGC CCA GCGGTCTGGCTA         TTTTTTGCAAATTGT  79 442
CXD78_RS16915 NONE
CXD78_RS16920 3497145 .. 3497188 + -22.8  -2.72471   TGTCCTTCATCGCGC ACAAAACAAAATGCCCGCAA GCGA TTGCGGGCATTTTGTTTTGA ATTCTCTGGTGGCGC 100 80
CXD78_RS16940 NONE
CXD78_RS16945 3502020 .. 3502033 +  -5.9  -3.30474   GCCTGTTCGAGCGCT               GGCTG TAGC CGGCC                TTGCTAGTTGTGAAC  53 18
CXD78_RS16970 3507738 .. 3507760 + -12.7  -4.57569   GGCGCAAAGAAAAAA          CCCCGG-CGC TTGC GCGACCGGGG           TTTTTGGGCACATCA 100 57
CXD78_RS16980 3508678 .. 3508706 + -15.4  -3.72576   CGCGGCAAAGAGAAA       GCCCCGG-CAATC ATGC GATTGACCGGGGC        TTTCATGAAGGCAGG  85 46
         rnr 3511694 .. 3511719 +  -6.7  -4.08064   ATTGCACCGTAGACC         GGGCCGCAGGGC CCG GCCC-GCCGCCG         TTTTCCGGCGGCGTT  67 80
        rlmB 3512513 .. 3512535 + -12.6  -3.03124   GTAAACTCTTGCAGC           GGCGCGCCGT CGC GCCGCGCGCC           TCTTCGAACGTCCGA  67 37
CXD78_RS17000 NONE
CXD78_RS17005 3514600 .. 3514614 +  -3.4  -4.66537   AAGCTAGTATTGGCG               CGGCTC AGG GCGCTG               TTTTCTCTTGACAGC  71 105
CXD78_RS17010 3515130 .. 3515142 +  -9.1  -3.64703   GGACGCAAAGGCAAA                TCGGC GCT GCCGA                TTTGCCTAACAAAAC  68 42
CXD78_RS17015 3515364 .. 3515397 + -12.4   -5.4505   AAGCAGGCGCAATAA    CCCCG-GCGAGGGCGC ATCG GCGCAC-CGCACGGGG     TTTTTTGTTGCGCGC 100 92
CXD78_RS17020 NONE
CXD78_RS17025 NONE
CXD78_RS17030 NONE
CXD78_RS17035 NONE
CXD78_RS17040 NONE
CXD78_RS17045 3521767 .. 3521779 +  -4.7  -3.69068   GGACAGGCACCCTCG                CGCGG TTG CCGCC                TATTTCTTGCCGTCC  55 98
CXD78_RS17065 3526247 .. 3526305 +  -4.3  -3.15544   GTGGCGCATTCCCAG --GGCAGCGCGCGGCCGGTCTGTGGGCTG GCG TAGCCCACCGTCCAGTGGCCCGCCGCCAA TTCGTCCGGGTGCCC  45 331
CXD78_RS17095 NONE
CXD78_RS17100 3532130 .. 3532140 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS17105 3533144 .. 3533156 +  -4.7  -3.57144   GACAGTTCACAGCTA                GCGGC CGG GGCGC                TTTGCGGCTCGGGCC  54 25
CXD78_RS17115 3535528 .. 3535556 + -13.1  -3.14564   GCTCGAAGCGCTTCT        TGTCCACGCCGCC ATG GGTGGCGTAGGCA        TTCATGCGCAGCTGC  68 275
CXD78_RS17145 NONE
CXD78_RS17150 3540980 .. 3541006 +  -6.4  -3.87373   AAGCGGCCCTCAGTG         GGCCGAGTCGAG GGC CTTGCCGTGGCC         TTTCTGGCCGATCTG  62 50
         smc 3546090 .. 3546111 +  -2.9  -3.28447   AACCCATATTCGGAT           TTGCGCTGCC TTA GGC-GCGGGA           TATTCTCATGAGTGA  46 41
CXD78_RS17165 NONE
        ligA 3549301 .. 3549330 + -19.5  -3.15663   CCCGGCAGCCGAAAA       CAAAATTGCCCGC GAAA GCGGGCAATTTTG        TTGATGGCGATGGCT 100 59
CXD78_RS17195 NONE
CXD78_RS17200 NONE
CXD78_RS17205 3553459 .. 3553475 +  -4.3  -3.05471   CCGGATTAGGGTTGA              TCCCGGT GGG GTCGGGG              TGGTTATTTGATACT  45 131
CXD78_RS17210 3554825 .. 3554848 + -19.6  -2.62735   TCTCCTGCTTCACCT          CGCACCGGCC TGAG GGCCGGTGCG           TCGTATGCGCCGTGT  93 101
CXD78_RS17215 NONE
CXD78_RS17220 3558105 .. 3558124 +  -7.8  -3.29461   CCGCGACATGGCCCG            CGCCGTCG AGCA TGATGGCG             TTGTCGAAGCCCTTG  55 392
        pncB 3569915 .. 3569932 + -14.1  -4.17048   GGTGTTCCAGCTTCC             GCCGGCC TGAG GGCCGGC              TTGTTTTCGCCAACC  91 16
CXD78_RS17290 3570415 .. 3570454 +   -18  -4.08945   CGCGCCTCGGGACGG  TACAGGCATTGCGGCATC GGCC GATGCCGCAATGCCTTCA   TTTTGCCGGGATGGT 100 114
CXD78_RS17305 3574160 .. 3574174 +  -4.2  -4.09685   CGGGGGCGGCCGCGT               GCCCTA CAC TAGGTC               TTTTGCACGCTCCGG  61 64
        argE NONE
        trpB NONE
CXD78_RS17320 NONE
CXD78_RS17325 3578455 .. 3578486 + -10.8  -4.67353   CCCGCCGGCAGTGCC      TGCGAACGCCCGGC CCAG GCCGGGCGTTGTTA       TTTTTCCATGCATGC 100 46
CXD78_RS17335 3580439 .. 3580492 + -13.7  -3.68359   CCCTTGCCGCAGCGG GGACAATTGGCGGGTGCCAGTCCCC CTGC GGGGACAGGCACCCGAGGAGTGGTC TTATGATTTTCCGGC  80 86
CXD78_RS17340 3581603 .. 3581629 + -23.8  -3.92869   GCACAGCAGGAAAAA         GCGGGTTGCGGC GCT GCCGCAACCCGC         TTTGTGCGTCAGTGA 100 66
CXD78_RS17350 3586237 .. 3586249 +  -4.1  -3.42809   CAACTGGAGACGGCC                TGACC ATG GGTTA                TTCGTTGGTGGTATT  49 23
CXD78_RS17355 3586963 .. 3587020 + -15.6  -3.27408   CTGTCTTACCTGGAT CGGCGCCATGCG-CGCGCTG--CCGTCGC CCG GCGACGGAATAGCGCGGCGCACGCCACCG TCTATTTGGGTAAGA  80 75
        msrP 3588006 .. 3588022 +  -2.1  -3.16564   AGCCTCTACCAGGGC              CTGGACC TGC GGGCCAA              TTACTGAGGTCCCCA  42 2
        msrQ 3588865 .. 3588899 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS17380 3591073 .. 3591104 +  -5.1  -4.03234   TCAGGTCGCGCACCA      GCTG-CGCCAGC CTGGCGGCC GCGGGCGTCAGC      TTTCTATGCCGCAAC  63 77
CXD78_RS17390 NONE
CXD78_RS17395 3594013 .. 3594062 + -13.5  -3.96148   GCCAGGCCACCGACG TGGC-CGCCC-GCGCCGCGGGCG AAAAGC TGGCCGCGGCGCTGGGCCAGCCG TTTATCGTGGAAAAC  84 219
CXD78_RS17405 3595124 .. 3595141 +  -2.7  -3.14132   GCCGGCCAGGCCCGC             GGCAA GATAGGCA TTGCC              TTCGTCCAGCAGCAG  43 303
CXD78_RS17415 3596459 .. 3596504 + -10.4  -3.05384   CTCATTCTTATATAA TGCGTCACGCGCTACTATTC GCCCAA GTTAAGTAGCGCGTCACGCA TTACATGGGCAAGGG  60 117
CXD78_RS17420 3599909 .. 3599919 +  -3.2  -3.59979   AATCCTATTCTTGCC                 TTCC TCA GGAG                 TTTGCCATGCCCAAC  49 39
CXD78_RS17425 NONE
        pruA NONE
CXD78_RS17435 3604130 .. 3604143 +  -5.9  -3.34947   TCGCCGCATGCGTGC               CTGGC TGAT GCCGG                TTGTGGGCCTTGTTG  52 384
CXD78_RS17445 3604972 .. 3605006 + -22.3  -3.53012   CTAGGCGCGCTGCCC    G-CAAAGGCCGCCCGG CATG CCGGGCGGCCTTTGTC     TTTGGCGCAACGCAG 100 42
CXD78_RS17450 3606071 .. 3606081 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS17460 3607064 .. 3607103 +  -9.4   -3.5361   CCTGGACAAATACAA  CCTATTGACAGTTCACAG CTAG CTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD78_RS17465 3608315 .. 3608328 +  -5.3  -2.83403   CCGGCGGCATGGCGA               GAAGA CCTT TCTTC                ATTTCCTGCCGCGCG  46 206
CXD78_RS17490 3614903 .. 3614933 + -12.5  -3.29144   TTGCACGACGCCCCC       GGCCACGTCGGCC AGCGC GGCCGACGTACCC       TTGTACGGCACGTGG  70 423
CXD78_RS17515 3619497 .. 3619507 +  -6.8  -3.51825   CCATCGACGCCGCCA                 TGCG GAA CGCA                 TTCTCGTTCGAGTCC  58 378
CXD78_RS17525 3622397 .. 3622409 +  -6.2  -3.60792   ACTTTCCACAGATCC                CGCC TGTCC GGCG                TTTCACCATTCGAGG  56 89
CXD78_RS17530 3622798 .. 3622818 +  -2.5  -3.13906   GTCAAGGGCGGGTCT           CCC-CCGG GGTGCG TCGGCGGG            TGGTTTTCCGTTAGC  42 46
CXD78_RS17535 3623362 .. 3623387 + -18.3  -5.42862   CCCGGCGCCGTACAC         GCCCCGCCGGCC GCA GGCCG-CGGGGC         TTTTTTTCGGCCTGT 100 51
CXD78_RS17540 3624209 .. 3624237 + -10.3  -3.55444   TAGAGTGACACCAAT       GC-GCCGGCACGG CAAGC CCG-GCCGGCCGC       TTTCCCCCATCCAGA  67 89
CXD78_RS17555 3627849 .. 3627883 +  -8.5  -2.71364   CCGCGTAGAGCTCGC    GGCTGATCACGCC-CC GGGT GGCGGCGTGCTCGGCG     TACTTGGCGCCCTGC  52 504
CXD78_RS17605 NONE
CXD78_RS17610 NONE
CXD78_RS17615 3639607 .. 3639623 + -15.1  -5.75945   TTCCGTTTTCCTCCT              GCCGCGC TCT GCGCGGC              TTTTTTTTGGGGCGT 100 55
CXD78_RS17620 NONE
CXD78_RS17625 NONE
CXD78_RS17630 NONE
CXD78_RS17635 NONE
CXD78_RS17640 NONE
CXD78_RS17645 3646495 .. 3646531 +  -9.9  -3.69395   GGGCAGCGGCCGCCG    CAGCACGGTGGCCGGCG CGG CGCTGGCCAACGCGGCG    TTGTTCCATGGTCGA  70 303
CXD78_RS17655 NONE
CXD78_RS17660 NONE
CXD78_RS17665 NONE
CXD78_RS17670 NONE
        lpdA NONE
CXD78_RS17680 3654625 .. 3654646 +  -4.3   -2.5474   GGCCTGCGCCAGCAG           CC-GTTCGGC GTT GCCGTGCAGG           ATCTTCTCCATCGCG  42 103
CXD78_RS17700 3659253 .. 3659286 +  -7.3  -3.65902   GTCAGCGGGTGCCTG     TCCCCCGTGCGGG GACAGGCA CCCGGGTGGGGGG      TTTACATGCGCTCGA  61 50
CXD78_RS17710 3661580 .. 3661618 +   -11  -3.20723   TGCCCGCTGCCGATG  ATGC-CCACCAGCGGCG CGAACA CGCCGGTGGTGGCGCAG   TTGAGTTCCTCGACA  64 224
CXD78_RS17735 NONE
        grxC NONE
        secB NONE
CXD78_RS17750 NONE
CXD78_RS17755 3669803 .. 3669840 + -13.3  -2.79183   CGCGAAGATGCGCGG   CGCAGCCGC-GCCGGTGG CCG CCAGCGCCTGCGGCAGCG   TGTCGTGCACCTGCA  67 293
CXD78_RS17770 3671992 .. 3672004 +  -9.1  -4.09685   GGTGTCCTGGACGCC                CTGGC CGC GCCAG                TTTTGCGCCATGGAC  72 173
CXD78_RS17825 NONE
CXD78_RS17830 NONE
CXD78_RS17835 NONE
CXD78_RS17840 3687845 .. 3687895 +  -8.1  -4.32857   GAGGACGGGCTCCCA GGGTTCGGCAGGTGCCTGTCTCC CGTGC GGGGACAGGCACCTGAGTGTCAC TTTGTCTTTGCCAGC  77 49
CXD78_RS17875 3694259 .. 3694286 +  -6.2  -3.17714   GCGGCTGTACTGATT        GTTGGCGTCGAC CAGC GTCGACAGCAGC         TTCATGAAGATTTCG  50 69
CXD78_RS17915 3703711 .. 3703723 +  -7.7  -3.61398   CAGCGCGATCGTGCC                CGTCA GGT TGACG                TTCTTGGGAAACCGG  60 299
CXD78_RS17925 NONE
CXD78_RS17930 NONE
CXD78_RS17935 3706361 .. 3706371 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS17945 NONE
CXD78_RS17955 NONE
CXD78_RS17960 3709627 .. 3709669 + -14.2  -3.33696   CATGAAGCACTGATG CGGTACG--GGGCGG-CGGCC CGCA GGCCGTCCGCCCCGCGCACCG TTCATTCCAGGCGGA  75 28
CXD78_RS17975 3712998 .. 3713022 + -14.9  -2.90075   CGCCGGTATCGATTT          CGCTGGCGGCC TGA GGCCGCCGGCA          TATGGTTCGAACGCC  73 12
CXD78_RS17980 3714580 .. 3714594 +  -2.7  -3.72576   AGGCCTGGCCGGACA               GCGGC AACGG GCCGA               TTTCCTGCAGCAAGG  53 464
        kynU NONE
CXD78_RS18010 NONE
CXD78_RS18015 NONE
CXD78_RS18020 3720589 .. 3720616 +  -3.2  -3.54424   CCCGTTCTTGATGTC        CGCGGC-GCGCGC GCC GCGCCCTGACCCG        TTTCCGACCGTCCCA  49 49
CXD78_RS18025 3721837 .. 3721851 +    -7  -2.62983   CGAAGCGCGCCAGCA               GCGCCG GTT CGACGC               TGATCTCGGCCTGCC  48 293
CXD78_RS18050 3724846 .. 3724873 + -19.2  -3.02324   GCGCCGTGTTGATTC        GGTGCCTGTCCC GACA GGGACGGGCACC         TGTGCTTTCGATCAG 100 57
CXD78_RS18065 3728020 .. 3728061 +  -6.5  -3.11634   CCGGCCGAATCGCTG TCGGTGCCGGTG-AGCGATC TGT GATCGGTGCGCCTGCACGGG TTCCGTCATCTGGGG  51 2
CXD78_RS18070 3729207 .. 3729257 + -18.9   -3.6579   GAGCGATCGACAGGG CGGCGGCGCCTGGCCGATGGCAGC CGGC GCCGCCGCCGGCCAGGCGG-GCTG TTGTTAGAATCCCTT  95 39
CXD78_RS18075 3730118 .. 3730152 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS18090 NONE
        rocF 3733298 .. 3733308 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 80
CXD78_RS18100 3734467 .. 3734481 +    -7  -3.41693   GCCCGATTTGGCGTA               GCCGGC CAC GCCCGC               TTCGTTCATGGTGGG  58 180
CXD78_RS18165 3750238 .. 3750264 +  -2.1  -3.61178   CCCTGGCTGCAGGCG         TTCCGGCCTGC CGTCC GCTGACCCGAA         TTTCCGATCCATCCG  48 5
CXD78_RS18170 3751476 .. 3751490 +  -2.7  -4.07568   GCAATACGCTATGCT               CGACG CGCGC CGCCG               TTTTCGCCGGCGCAG  59 70
CXD78_RS18175 3751931 .. 3751955 +   -15  -4.57073   GTCCACCCATGAAAA         CCCCGCCAGGC CTGC GCC-GGCGGGG          TTTTTCACAAGGGTG 100 49
CXD78_RS18190 3754418 .. 3754428 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 71
CXD78_RS18195 NONE
CXD78_RS18200 3756106 .. 3756122 + -10.8  -5.10497   GGCCGTAGTTCAACA              GCCCGC CTCGA GCGGGC              TTTTTTGCGTCGGTT 100 47
CXD78_RS18205 3756528 .. 3756538 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS18215 3757531 .. 3757576 +    -6  -2.89564   TACAACCTATTGACA GTTCACACCTAACCCCCACC CGCCCC GGTAGGGGCTAGGAGATAAC TGTGTCCGATACCAA  48 14
CXD78_RS18220 3758134 .. 3758144 +  -2.4  -3.39895   GTGCAGGTAATGGCC                 CAGC TCG GCGG                 TTCGTTCATGAAGCA  46 114
CXD78_RS18230 NONE
CXD78_RS18235 NONE
CXD78_RS18240 NONE
CXD78_RS18245 3760477 .. 3760491 + -12.8  -3.02511   CCGCCTGATCTCCCT               GGGCGG CGC CCGCCC               TATTACCCACGTAGC  67 33
CXD78_RS18250 NONE
CXD78_RS18255 NONE
CXD78_RS18260 NONE
CXD78_RS18265 NONE
CXD78_RS18270 3763321 .. 3763331 +  -8.2  -3.54424   CAGCAGCTCGCCTGA                 CCGC ATG GCGG                 TTTCGAGGGATAGCA  63 406
CXD78_RS18290 3768327 .. 3768355 +  -4.4  -3.44622   ACTTCGACCGATTCC        CCGCGCTGGTTG GTCAG CGGCCAGCGCAC        TTCGTTCTGCGGGTC  49 329
CXD78_RS18305 3770557 .. 3770576 + -16.4    -3.767   CCAGGACGAAAAAAA            CGGCGCCC CGCA GGGCGCCG             TTTCGTGGCTGGCTC  91 219
        dnaA NONE
CXD78_RS18335 3776187 .. 3776200 +  -2.3  -5.03145   CGCGCGCGAACGGTG               TGGCC GTGA GGCTG                TTTTTTAAGGCGTTA  79 81
        gyrB 3778707 .. 3778728 + -13.7   -4.4078   CGTCGTATGCCGAAA           GGGGCTGCC GTGA GGCAGCCTC            TTTTGCTTGGGGGCG 100 53
CXD78_RS18350 NONE
CXD78_RS18355 3782490 .. 3782544 +  -6.3  -3.76759   CCTGCAGGCGTGCGC GAGGGGCGGCGTAT-ACTGGCTCTCGC CGC GCGAAGGCCGGCCAT-CGCCGTGCCGC TTTCCTGACCTTCAT  62 369
CXD78_RS18365 3783782 .. 3783832 +  -6.3  -3.44848   GCAAAATCTGCAAAG CGGG-CTT-GGCTACATTGCGTTC ACTGGA GATCGCA-TGAAGCCCAAGACCCG TCTTTACTACGCCGA  55 79
CXD78_RS18370 3784676 .. 3784689 +  -9.5  -3.26471   GCGTTGCAGGCCCGC               CCGGG CCGG CCCGG                TTACTATGGCCGTAG  61 40
CXD78_RS18380 3787630 .. 3787659 +  -8.7  -3.09681   ATGATGCAGTGCAAA       TATTACGTTTACG TAAA CGTAAACGTAAAG        TTGAGTCGGGTTTTC  56 487
CXD78_RS18395 3789423 .. 3789457 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 218
CXD78_RS18415 3794347 .. 3794360 +  -3.1  -2.79796   CATCAACGCCCCACG               GGTAT GCCC ATGCC                TATCATCGAATCCCG  40 117
CXD78_RS18420 NONE
CXD78_RS18425 3798027 .. 3798065 +  -6.7  -3.14931   CGCTGATCGAAGTGA  AG-TGA-ATGACGCCGGGC GCG GCCCGGCGTCGGGTCAGCC  TTGCTCCGGCGTGAC  52 21
CXD78_RS18440 3800833 .. 3800870 +    -9  -2.70932   TGCCCAGCGCCGGCG   CGGGCGCGCCG-GGCTC CACCC GCGCCACGCCGTGCTCG   TCGTTGGCGGCGAGA  52 188
CXD78_RS18450 3803051 .. 3803063 +  -6.2  -2.64155   CGTCCCGACTCCAAT                GCGC CAATC GCGC                TGCCTTTCCGCCAGG  46 70
CXD78_RS18455 3805188 .. 3805217 + -20.9  -3.29144   CGGGCGCCGACGCAA       TGCACAACCCACC GCAA GGTGGGTTGTGCA        TTCTGGACGCGGTCG 100 59
CXD78_RS18460 3807656 .. 3807675 +  -3.4  -4.07568   GAAAACGTGAAGACC            GCGCGCAG CGCA CTGCCCCC             TTTTACAGAGCCGCG  59 87
CXD78_RS18465 3808345 .. 3808380 + -16.8  -2.70525   GATGCGGCCGCGCCA    GACATGGCGCGCCGGC CCGT GCTGGCGCGCCATCGC     ATTGATTTCCGGAAC  80 39
CXD78_RS18480 3814648 .. 3814670 +  -5.4  -3.50853   GCACCGCGCGGTCCA           CGCGACCGAC GCG GCCAGTTGCG           TTATCGTTGCCGCAA  54 102
CXD78_RS18485 3815772 .. 3815782 +  -8.2  -2.82635   GCGATTCGTGCGCAA                 GGCC CGG GGCC                 TGTGATGATCGAGCT  54 10
CXD78_RS18490 NONE
CXD78_RS18495 NONE
CXD78_RS18500 3818199 .. 3818220 +  -3.5  -3.64822   AGTTCTGAGCTTGCC           CGACCCGCG AGGC TGCGCGCCG            TTTCCCTGCAGGACT  54 33
CXD78_RS18505 NONE
CXD78_RS18510 3820926 .. 3820973 +  -2.7  -3.02511   TGGCGGTGGACAACT CC-TGGATGTTCATCAGCACCGA CGCG TCGCCGCTGACGCACA-CCACGG TCTTGCCGGGATGCG  41 467
CXD78_RS18520 3823072 .. 3823088 +  -5.7  -3.28712   GATCGCGCGCCAGCG              CGGCCAG CGG CAGGTCG              TTCTCGGCCAGGCCG  52 137
CXD78_RS18530 3824778 .. 3824808 +  -8.9  -3.21063   TGTGCCGGCACTTTC      CCGC-CAGACGGGC GCTC GCGCGCCTGCGCGG       TATTGCGTTTGGCTG  56 299
CXD78_RS18535 3825815 .. 3825825 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 270
CXD78_RS18545 3826866 .. 3826914 +  -9.7  -3.03159   CGGCGCACGTCCTCT TCGGCG-CGGCC-GCTGCGCGCCAC GTA GTCG-GC-CAGCTGGTCGGCGCCGA TGTTGCCCACGTTGA  59 62
CXD78_RS18555 NONE
CXD78_RS18560 3833737 .. 3833759 +  -8.4  -4.05714   CGCGGCTGAGCCCGC          GC-CGCCGG CCAGCC CCGGCGTGC           TTTATCATTGGCCCT  72 32
CXD78_RS18565 NONE
        thiD 3835521 .. 3835531 +  -3.2  -4.21462   GTTGACTCCCCTATA                 TTGG TTT CCGA                 TTTTCCGTCATGAAT  63 67
CXD78_RS18575 NONE
CXD78_RS18580 NONE
CXD78_RS18585 3837765 .. 3837805 +  -6.8  -3.05268   CGTGAAAAGAAGTCA CCGCGTCGACGCAGC CCAGGGCCGCCA GCAGCG-CGGCGCGG  TCTTGCACCTGATTG  48 246
CXD78_RS18595 3839423 .. 3839436 +  -3.7  -2.87132   GCGCCCTGCGACCCG               GGCGC GCCC GCGCA                TCTGTAACAGGGACG  43 97
CXD78_RS18600 NONE
CXD78_RS18605 3841564 .. 3841595 +  -4.4  -3.72576   CAGGGGGGCGCACGG      CGGCGCGGCGC TACGCTACACT G-GCCGCGCTG      TTTCGTCCGCGAGCG  55 92
CXD78_RS18610 3842975 .. 3843009 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD78_RS18625 NONE
CXD78_RS18630 NONE
        fusA NONE
         tuf 3848928 .. 3848953 + -11.1  -4.62203   AGCAGTACCCAACCA         GTGAGGGCGGT AGTC GCCGCCTTCGC          TTTTCGTTCTTTAGG 100 41
CXD78_RS18645 3849325 .. 3849364 + -20.2  -3.53091   TGTGGCGCAGCTCGT  GAAAAATGGCCGCATTCC CCCG GGAGTGCGGCCATTTTGC   TTTGGCGCGACAGCT 100 63
CXD78_RS18650 NONE
CXD78_RS18655 NONE
CXD78_RS18660 NONE
CXD78_RS18665 NONE
CXD78_RS18670 NONE
CXD78_RS18675 NONE
CXD78_RS18680 NONE
CXD78_RS18685 NONE
CXD78_RS18690 NONE
CXD78_RS18695 3854448 .. 3854470 + -17.8  -5.84381   CGCTCCGGCATGAAA           CGGCAAGAGC CTG GCTCTTGCCG           TTTTTTTGTTCATCG 100 70
CXD78_RS18715 NONE
CXD78_RS18720 3858545 .. 3858556 +  -4.4  -2.90992   CAAGGCGTAAGGGGC                GACA GACA TGTC                 TCGTTTGCAAGAGTT  44 31
CXD78_RS18725 NONE
CXD78_RS18730 NONE
CXD78_RS18735 NONE
CXD78_RS18740 NONE
CXD78_RS18745 NONE
CXD78_RS18750 NONE
CXD78_RS18755 NONE
CXD78_RS18760 NONE
        secY NONE
CXD78_RS18770 NONE
CXD78_RS18775 3863641 .. 3863660 +  -2.8  -3.08812   GCGTCAAGGCTAACC            CAGTTAGCG GTA CGC-AACGG            ATTTATTCAAGGAAC  44 28
CXD78_RS18780 NONE
CXD78_RS18785 3864440 .. 3864455 +  -4.6  -2.87344   ACAACGGCTGCCGTC              CGCCGA AGCG TCGTCG               TATCTAAAGGGAATC  44 3
CXD78_RS18790 3865170 .. 3865199 + -14.3  -3.59979   GCCTCACCCGCGCCA       GCCCGCTTTCGCCA TTT TGGCG-GGGCGGGC       TTTGCGGTAGAAACG  78 98
CXD78_RS18795 3866308 .. 3866336 + -21.7  -2.84218   CCGTAAGCAGTCAAG        CGCGGTGGGCGCG CCA TGCGCCCGCCGCG        ATGTTTTCATGCATC 100 35
CXD78_RS18800 3866873 .. 3866902 + -23.7  -4.56597   GCAGCGCGGAAAGCG       GCAAGGGCGGGTC TTCG GACCCGCCCTTGC        TTTTTGCGGCGCGCG 100 46
CXD78_RS18810 NONE
        dsbD 3869735 .. 3869788 +  -3.1  -3.04144   GCTCCTGACGTTGCT TCGTATC-GCCTCGGGCGCGC-CCG AGGCGA TGGCGTGGGCGAGAGGCTGGTACGA TGTTGCCCATACCAG  42 33
CXD78_RS18820 3870987 .. 3870997 +  -8.2  -2.70932   AGGCGAAGGTCGGCA                 CGCG GAA CGCG                 TCCTTGACCCGGCGC  52 207
CXD78_RS18835 3873449 .. 3873475 +  -6.4  -5.14563   CCCGTTGTCTATGAG         GGGGGGAAGC CGATTGC GCGGCCCCCC         TTTTTTCATGAACGC  90 111
CXD78_RS18840 NONE
        ccsB 3876939 .. 3876968 + -22.3  -3.54459   GCGCCGCCCTTCAAA       GACAATGCCCCGC AGAT GCGGGGCATTGTC        TTTGGCAGGCCTTGC 100 44
        cyaY 3879311 .. 3879364 + -17.3  -2.80816   CGACGTCGCTGCGCT TG-AGCGTGGCGCGGGCGCGGGCGGC GGT GCCGCTGGTGGCCACGCCACGCAGCA TATCGTCCATGACGA  78 513
CXD78_RS18870 NONE
CXD78_RS18875 NONE
CXD78_RS18880 3884395 .. 3884450 + -14.6  -5.14965   TTCGCCGTGCTTTTA TTCGCCGGCTCCGCGGCAGTCCAGGGG CAT CTGCTG-ACGGCAACGGGGCCGGCGGA TTTTTTCGTCCGCGT 100 120
CXD78_RS18895 3889504 .. 3889522 +   -16  -3.44848   GCTTCACCCAGTATG             CGCCGGTC ACC GACCGGCG             TGTTTCATGAAGCCG  82 142
         ssb 3890152 .. 3890167 + -10.4  -5.78622   CGCTGGATGCGAAAG              CCCTGC CCAG GCAGGG               TTTTTTTTCGCCTGG 100 57
CXD78_RS18905 NONE
CXD78_RS18910 3892993 .. 3893005 +  -4.8  -3.32844   GGGCTGGGCCGGGCC                GCGA TCGAT TCGC                TTATCCGCTGACCGC  49 2
CXD78_RS18915 NONE
CXD78_RS18920 NONE
CXD78_RS18925 NONE
CXD78_RS18930 3895875 .. 3895917 +  -7.4  -2.79796   GCCAGCATATGGGGC ACCTGCACCGCCACGTCGCG CGT CACGCCCAGGCGTTGCAGGG TGTCCTGCAATACGC  49 284
CXD78_RS18940 NONE
CXD78_RS18945 3899461 .. 3899491 +  -3.2  -2.63301   GGATCTTTCCTGCCA       GCAGTGTGTCTATG TAC TACATTCACACTGC       TACTCTCAGAATGTC  39 137
CXD78_RS18950 NONE
CXD78_RS18955 3901506 .. 3901529 + -17.4  -3.28712   GCCCCGCAGCGGGGC          GCGGCTGGCC GCAA GGCCGGCCGC           TTGTCGCCCGCACGC  86 59
CXD78_RS18960 NONE
CXD78_RS18965 3903648 .. 3903671 + -17.4  -3.97331   GACACGATTGTCCTG          CCGGCGGGCG AGGC TGCCCGCCGG           TTCTTTGCCTGGATT  95 44
CXD78_RS18970 NONE
CXD78_RS18975 NONE
CXD78_RS18980 3906845 .. 3906862 +  -9.9  -3.72576   TCATGATTTCCTCTT             TTCGCAC GGAC GTGCGAA              TTTAATCGAAAAAAA  71 284
CXD78_RS19025 3915413 .. 3915428 +  -4.6  -2.53382   CCGCCGATTGACAAG              CCTGGC CGGC GCTGGG               TAGATTGCGCCTACT  42 30
CXD78_RS19030 3916537 .. 3916575 + -10.9  -3.73224   AGCGGGCGCATACCT  CGCTTGAAGGCGGCGGCC GCAT GGCCGCCGTCG-CAGGGG   TTTCGTACCCCATCG  73 39
CXD78_RS19065 3921479 .. 3921498 +  -4.8  -3.35679   CCTGGCCGAAGGAGC            GGCCTGAG GCGC CGCCGGCC             TTCTCCATCCACGAA  51 19
CXD78_RS19075 NONE
CXD78_RS19080 3924638 .. 3924677 + -13.5  -2.78715   ACTGAGGCTGCGCGA TCGCCC-GC-CCGCCGCGC GTGC GCGCGGCGCCGCTGGGCGC  TATAATGCGCAACTT  67 36
CXD78_RS19085 3925251 .. 3925278 +  -8.4  -3.06831   AGACCTCCTCGAGTG        GCGCCG-TGGTGT CGA ACGCCATCCGCGC        TTGCGTGAACGTTGA  55 477
CXD78_RS19100 3927251 .. 3927282 +   -13  -2.89668   CATCCCCGACCAGCT      GACCGACTGAGCGC CGGC GCGCTCAGTCCATC       TGTATCCCGCTCTTG  69 16
CXD78_RS19155 3938946 .. 3938958 +  -5.5  -3.55622   ACCTCGCGGTGCACC                GCGTC CTC GATGC                TTTCGCCGACTTCGA  54 315
CXD78_RS19180 3943846 .. 3943858 +  -6.9   -3.7456   GCCCGAGAACGTGGC                CGGCG GCT TGCCG                TATTTCTTGGTGTAG  61 272
CXD78_RS19225 3953221 .. 3953236 + -10.4  -2.57132   TCGCCGGCAGCAAAC              TGCCGC TGGC GCGGCA               ATTCTAGGCGGCGGG  57 3
CXD78_RS19230 3954285 .. 3954295 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS19235 3955479 .. 3955498 +  -5.6  -3.90112   CACGGCGCACAGGAC            GCCGCGGCC GTC GGCCA-GGC            TTTCCTTCAGGCCGC  60 205
CXD78_RS19270 3962735 .. 3962758 +  -9.4   -3.1372   AGGCCTTGATGTCGT          GCGCCAGCGC TTCG GCGCCGGCGG           TATTGGTGGCCAGTA  59 220
CXD78_RS19300 3966986 .. 3967003 + -12.7  -3.21218   CTGCCGGCGAACGAA             TGCCCCC TTGC GGGGGCA              TTCGTCGTCAAGGCT  69 86
CXD78_RS19330 3972441 .. 3972483 +   -14  -3.23853   CGCCGGCGCCGAATC CTCCGAGGCCGTGCTGGCGG CGG CCGCCGCCGCGGCTTGCGAG TATTGCTTCCACACC  75 147
CXD78_RS19340 3976328 .. 3976375 +  -6.1  -4.63218   GCGGTCTGTCTTGCA TGCGCGG-GCGCCG-CGTACGGC GTCA GGCGGGGGTCAGCGCACCGCGCA TTTTCTTCAGCGCCG  78 397
CXD78_RS19365 3981064 .. 3981093 +   -15  -4.25104   CGGGGCGTTGCATGC       TGCCCACCCGGC CCCTGT GCCGCGTGGGCA        TTTTGCTGCGCCCGC  95 55
CXD78_RS19370 NONE
CXD78_RS19375 3987669 .. 3987681 +  -9.1  -3.18264   GCCTGTCCCCGCGGG                GACGG ATA CCGTC                TTAGTACGTACGGCA  59 101
CXD78_RS19380 3988503 .. 3988517 +  -7.8  -3.28712   TGGGTCGCCACCGTG               GCGGTG GGC TACCGC               TTCTGAGGCGCCCGC  56 5
CXD78_RS19385 NONE
CXD78_RS19390 NONE
        mlaE NONE
        mlaD NONE
CXD78_RS19405 3992791 .. 3992809 +  -5.2  -4.72386   GGCCACCGCCCGATT             CGCAAGGA GAT TTCATGCG             TTTTTCCATCGTTTC  81 45
CXD78_RS19410 3993588 .. 3993599 +  -5.8  -4.07568   AGCCGCGCCGGCGCG                GCTG GAAG CAGC                 TTTTCGGCCAGCCGG  64 185
CXD78_RS19420 NONE
CXD78_RS19425 NONE
        murA NONE
CXD78_RS19435 3997351 .. 3997372 + -18.7  -2.61274   CATCGCCTGAACCCC           GCCGCCCGC GCCG GCGGGCGGC            CTTCCTTGCAGTACC  87 31
        hisD NONE
CXD78_RS19445 NONE
        hisB 4000361 .. 4000375 +  -4.9  -2.62184   TGGGCGATGCCGTGC               CGTCC ACCAA GGGCG               TGCTGTAACGCCCCG  42 3
        hisH 4001106 .. 4001118 + -10.5  -2.60615   AAACGCCTGTCGCGA                CGGCC TTG GGCCG                ATATTTCCAACGACT  57 39
CXD78_RS19460 NONE
        hisF NONE
        hisI NONE
CXD78_RS19475 NONE
CXD78_RS19480 4003812 .. 4003827 +  -2.4  -2.90496   TCCCTGGAAAGGCCG              CGTGGC TCCC GCCGCA               TAATTTCGGAGAACC  40 7
        tatA 4004084 .. 4004109 + -12.6    -3.889   CCTAGTCCCGGCCCG         GGACCGGC-CC ATGAC GGCGCCGGTCC         TTTCCTATCGTTCCA  81 36
        tatB NONE
        tatC 4005426 .. 4005451 +  -5.3  -2.52676   AAGTAGACGGTTTCA         CGCTTGCCGCGG CCG CC-CGGCATGCC         TACATTGCCGGCATG  44 65
CXD78_RS19500 4005967 .. 4005981 +  -4.2  -2.82327   TTCGCATACCAAATC               CTTGCC GGC GCCAAG               ATTTCAGTATGAGAA  43 43
CXD78_RS19505 4007190 .. 4007233 + -11.6  -2.52516   CCGTCCGGCCGGCAC CATCCCGCATACGTGTTGGC AACC GCCAACGCGCATGCGTGCAG ATTCGTCGTACAAAA  61 67
CXD78_RS19510 NONE
CXD78_RS19515 NONE
CXD78_RS19520 NONE
CXD78_RS19525 4009773 .. 4009783 +  -3.2  -3.63968   ATATTGCGAATGAAC                 CCTT CCG GAGG                 TTTCGACGTTTCCGC  53 28
CXD78_RS19530 4010532 .. 4010550 +    -3  -3.09785   CGGCAGCGTCGATAT             GTTGAGCC GCC GGCTCGGA             TCTGTTCGCCTGTCC  44 21
CXD78_RS19535 NONE
CXD78_RS19540 NONE
CXD78_RS19545 NONE
CXD78_RS19550 NONE
CXD78_RS19555 NONE
CXD78_RS19560 NONE
       virB9 NONE
CXD78_RS19570 NONE
      virB11 4018915 .. 4018925 +  -2.4  -4.29396   ACGCCTGCCGCCTGC                 ACGC ATT GCGA                 TTTTCGTGCATAATT  62 40
CXD78_RS19580 4019044 .. 4019065 + -15.9   -4.7497   GCCAGATTCCAGAAA           GCCCGGTTC ATGC GAACCGGGC            TTTTTGCTGCCTGCC 100 37
CXD78_RS19590 NONE
CXD78_RS19595 NONE
CXD78_RS19600 NONE
CXD78_RS19605 4024435 .. 4024467 +  -5.4  -3.02043   ATGTGCCTGCTTGCT      TTGCGCACCGGCGT CCATC GCGCCGCGCCGCAA      TCTTCCCACCGCCTT  47 209
CXD78_RS19610 NONE
CXD78_RS19615 NONE
CXD78_RS19620 4028226 .. 4028259 +  -5.2  -3.71873   CGCATCGAATTCCCG    AGCCGGCG-CGG-CAC GCTG GTGGCCGTCGACGGCG     TTTCGCTGTCGCTGG  57 75
        argJ NONE
CXD78_RS19640 NONE
CXD78_RS19645 4032930 .. 4032949 +    -2  -2.89475   GGATCCGCGGGCTGC            TCTGACGC AACG GCGCTAGG             TGTGATGTCTCAATA  40 21
CXD78_RS19650 4034020 .. 4034030 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS19655 4035069 .. 4035079 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD78_RS19665 4036257 .. 4036278 +  -3.7  -2.70932   CGCCACGCTCAGGTA           GT-CGATCAG CCC CTGCTCGTAC           TGGTTGCGCGCCAGG  40 199
CXD78_RS19705 NONE
CXD78_RS19730 NONE
        glpK 4054138 .. 4054174 +  -2.2  -3.53811   CACGCCGGCGCGCCG   GCCGCGGGGCTG-GCC AGCTGGC GGCGCAGCACCA-GGC   TTTGCGCGCCATGCA  50 138
CXD78_RS19770 4060856 .. 4060872 +  -2.2  -2.70932   CACGACACGCACGGA              GGCC AAGCATGAA GGCC              TGGTTGCGACAACAC  38 14
CXD78_RS19775 4061763 .. 4061776 +  -2.3  -2.76696   AGTGACCCGCAGTAC               GCGCT TTTA AGCCC                CTTGTTCCGCCGAAA  38 16
        cheD 4062886 .. 4062931 +  -6.2  -3.18264   CGGCGTGCTCCAGGT TGCCGCGGTTCAGCTTGGGC AGGATCGC GCCCA-GCTGC-TCGCGGTA TTGCTCGATCAGCGC  51 280
        mutY 4067629 .. 4067639 +  -3.2  -3.28924   CCAGCCTGAAGGTGA                 TCTG CTG CAGG                 TTCTGCCGCCCGCTG  47 95
CXD78_RS19800 4069361 .. 4069371 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 144
CXD78_RS19805 NONE
CXD78_RS19810 NONE
CXD78_RS19815 NONE
CXD78_RS19820 NONE
CXD78_RS19825 NONE
CXD78_RS19830 NONE
CXD78_RS19835 4076489 .. 4076508 + -16.4  -6.06723   GGCCGAGCGTGCACG            CCGCCCCG CAAC CGGGGCGG             TTTTTTTTTCGCGCG 100 57
CXD78_RS19845 NONE
CXD78_RS19850 4079209 .. 4079234 +  -5.9  -3.61652   GACGGAAAGGCGATG         CCGGCGTCCGG CTGG CCCGCCGCCGA          TTGATTGTTTACGCA  56 53
CXD78_RS19855 4080685 .. 4080705 +  -2.4  -2.78712   AGACCAAGCCCTATC            CCAGCGAG CCATT CACGCTGA            TCGTTCCGTTCGGCG  38 209
CXD78_RS19870 4083668 .. 4083687 +  -2.8  -4.07568   GCACCGTCACGCGCT            CCAGCGTGT CGA ACAC-CAGG            TTTTCCACAGCCAGG  58 124
        mnmE 4096102 .. 4096120 +  -6.7  -2.62184   CCGCGCCGGCGATGC            GGCC-CAC GATC GTGCGGCC             TGCTATCGCGCAGCC  47 398
CXD78_RS19935 4098210 .. 4098223 +  -2.3  -3.29947   AAACCCGCCATCGCA               CGCTG AAGA CGGTG                TTGCTGTGGTGGCTG  44 49
CXD78_RS19940 4099685 .. 4099699 +  -5.7  -3.06183   TCATCCGTTGGCCTG               CGATC TGCGC GATCG               TTCCATGGCCATCCA  47 74
CXD78_RS19945 4100768 .. 4100800 + -18.4  -3.02144   AAGAAGTAAACCGAT     CGCGCGGCCGGCGGC ATGC GCCGCCG-CCGCGCA      TCTTCCCAACGGTGC  90 32
CXD78_RS19950 NONE
CXD78_RS19955 4102844 .. 4102865 + -15.9  -5.06414   CGGCCGATTGAAAAA           TGCCGCGGT TCGC ACCGCGGCA            TTTTTCTTGGGCGCA 100 46
CXD78_RS19965 4104674 .. 4104685 +  -7.2  -4.58395   TCGCCCGCTCTGAAT                CGGG AAAT CCCG                 TTTTTCCCGCATACC   0 28
CXD78_RS19960 4102844 .. 4102865 - -15.9  -4.65895   CGGCCGATTGAAAAA           TGCCGCGGT TCGC ACCGCGGCA            TTTTTCTTGGGCGCA 100 59
CXD78_RS19930 4095382 .. 4095396 -  -5.7  -4.15788   AACGTCTTCAACAAA               GTCGA TCTGC TCGAC               GCGGCGTTCCAGGGC  69 303
CXD78_RS19920 NONE
CXD78_RS19915 NONE
CXD78_RS19910 NONE
CXD78_RS19905 NONE
CXD78_RS19900 4088709 .. 4088721 - -10.5  -2.78384   GTTTCTTTTAGCACA                GCGCG CGG CGCGC                TCAGGCCTGCTGCGC  57 26
CXD78_RS19895 4087340 .. 4087360 -    -9  -3.12999   GCATGGGACATGGAA            CCGCTCCT TGTTC AGGAGCGA            TCCATTATGAAAACG  59 130
CXD78_RS19890 4086419 .. 4086429 -  -8.2  -2.57344   GACGCGCGTCAGAAC                 GGCG CGT CGCC                 TTCGATCGTGGTGCG  52 8
CXD78_RS19885 4085311 .. 4085324 -  -2.4  -2.86676   CCGAGGAATCGAAAC               GATG CGCGCC CATC                TCAGCTTCCCTGCGC  40 26
CXD78_RS19880 NONE
CXD78_RS19875 4083592 .. 4083621 - -22.9  -3.48593   GACGCCGCGACACAA       GGCGGCCGCGCCCG CAA CGGGC-CGGCCGCC       GGCGGCATTCAGCGC 100 34
CXD78_RS19865 4080806 .. 4080838 - -10.6  -4.17762   GATCGTGGAAAACAA     GGCTG-GCGCCAATG GCAT CATCGGCGCGCAGCA      TGCGAAGAAGGCGAC  89 235
CXD78_RS19840 4076105 .. 4076117 -  -9.1  -3.01791   ACGGCGTCCTGAACA                TCGCC CGC GGCGA                CCGGGTCCGGATGAA  55 446
CXD78_RS19795 4067186 .. 4067216 -  -5.2  -2.52896   CCATCCCCGAACGCA       GCACGGCCATGCTG GTG CTGCACGGCCCCGA       CGGCATCCTGCTGCA  42 379
CXD78_RS19765 4058757 .. 4058774 -  -2.5     -2.97   AAATCAATCTACAGA             GTCGGAC GTTC GGCCGGC              GCGGACGCGCCGGCC  41 112
CXD78_RS19760 NONE
CXD78_RS19755 NONE
CXD78_RS19750 4055612 .. 4055646 -  -2.7  -3.53811   GCGATCCGCCGGAAA    GCCCGGCGCCAGCG CCGTTTCC CGCCGCC-CCGGCC     CGCCGCCTCAGTGCA  49 33
CXD78_RS19745 NONE
CXD78_RS19740 4053698 .. 4053711 -  -8.1  -3.14132   GCTGTCGTGCATGAA               TGCCG ACAG CGGCA                TCCCGCTGTCCGAGC  53 358
CXD78_RS19725 4050725 .. 4050752 -  -4.8  -2.71712   GTCGTCGCCGGAAAT        CGAGGCG-TTATG TGC CATATGCGCCGCG        CACGGGCCCGTGGGT  43 42
CXD78_RS19720 NONE
CXD78_RS19715 4048933 .. 4048948 -  -7.6  -2.57132   GCCTGCGCCGAGAAG              CTGTCA AATT TGACAG               GATCTGCCGCGGCCG  50 45
CXD78_RS19710 4048250 .. 4048300 -   -11  -2.50935   ACGCCACCCAGGAAC GCCCGCCCCGCGTGCTGCTGCT CGACGGC AGCGGCAACATGCGCGCCGAGC TGGTCATGACCGCCA  58 248
CXD78_RS19700 NONE
CXD78_RS19695 NONE
        zapD 4045044 .. 4045058 -  -5.6  -3.55071   CCAGACCGGCCCAAA               CTGGCA GTT TGCCGG               GCGCTGCTGAAATAG  54 137
        mdtA 4043725 .. 4043754 -  -7.2  -3.21099   CGGCCGCAGGATGAA       CAGGCGCGACG GGCTCACGG CGTC-CGCCTG       GGCGCCCCGGTATTG  52 10
        mdtB 4040661 .. 4040683 -  -4.8  -2.53164   GGACGGACGATGAAC           GGCGCC GACAGAATCAT GGCGCC           TGCCGCGCGGCCGCG  42 16
CXD78_RS19675 NONE
CXD78_RS19670 4035880 .. 4035914 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS19630 4028423 .. 4028452 -  -9.9  -3.16191   CGACACCTTGAGCAA       CGCCGAGCAGCGCA AGG TGCGCGGC-CGCCG       CATCGGCATGATCTT  62 140
CXD78_RS19585 4019044 .. 4019065 - -15.9  -3.91144   GCCAGATTCCAGAAA           GCCCGGTTC ATGC GAACCGGGC            TTTTTGCTGCCTGCC  91 66
CXD78_RS19360 NONE
        fghA 3978111 .. 3978142 -  -4.3  -4.08706   CGCCCAGTATATAAA      GCGGCCCGGGC CCGGCCTGTT ACCCCAGCCGC       TCGACGTGAAACCGG  62 13
CXD78_RS19350 3977333 .. 3977352 -    -2  -3.53012   CTGCGCCGCGCCAAA            GTTCCGGA ATTT CCCAGTAC             GCAGGATATTTTTCT  48 54
        rpoH 3976301 .. 3976320 - -13.6  -5.40474   AGGCCCCCAAAAAAA            CAGACCGC CGTA GCGGTCTG             TCTTGCATGCGCGGG 100 55
CXD78_RS19335 3972006 .. 3972021 -  -8.2  -3.66666   GCGAAAACCTGGAAA              CCGCGC TGGT GCGCGA               ATGCGGCGAAGAAGC  63 427
        coxB 3970045 .. 3970077 - -13.4  -3.22858   CCAACTACAGGAACA     GCAGCGG-GGCGCGC TTCA GCGCGCCTCCACCAC      GTCCTTGGGTTGGAC  73 8
        ctaD NONE
CXD78_RS19315 NONE
CXD78_RS19310 NONE
CXD78_RS19305 3966986 .. 3967003 - -12.7  -3.33696   CTGCCGGCGAACGAA             TGCCCCC TTGC GGGGGCA              TTCGTCGTCAAGGCT  71 57
CXD78_RS19295 NONE
CXD78_RS19290 NONE
CXD78_RS19285 NONE
CXD78_RS19280 NONE
CXD78_RS19275 3962574 .. 3962600 -  -8.7  -2.87132   TTGGGCGTCCACAGA         TATCGGCCCCC CATGC GGGGACAGATA         CCGTCTTGGCAGTCA  54 137
CXD78_RS19265 3961446 .. 3961461 -  -2.4  -4.07885   CAGCCCCTGCCAAAA              CGCCGG ATGA CCTACG               CCGCTGGCCGCAAGT  58 111
CXD78_RS19260 3960589 .. 3960618 -  -2.6  -3.31322   GCGAAGGTTCGATAA       GCGCGACGATTC CAGGGC GTGCCGGCGCGC        TACGGCTTGTCCGCC  44 25
        glmU NONE
CXD78_RS19250 3957695 .. 3957726 - -10.8  -3.04322   TGCAACCTCGCAATA      CGCGGCGTCAGCGGA CCA TCCGCCG-CACTGCG      GGCATTATAGAAGTA  62 87
CXD78_RS19245 NONE
CXD78_RS19240 3955096 .. 3955130 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS19220 3951511 .. 3951521 -  -8.2  -5.15634   CACTCTAGGAAAAAA                 GCGC GGC GCGC                 GAAAATAATTAAAAC  95 203
CXD78_RS19215 3950070 .. 3950101 -  -8.6  -2.56596   TGGGTGACGAAGGGA      TGCGAGGGCCG-CCG TGG CGGCCGGCCCTCATT      CGGAGGTGGCGGTGC  52 21
CXD78_RS19210 NONE
CXD78_RS19205 NONE
CXD78_RS19200 NONE
CXD78_RS19195 NONE
CXD78_RS19190 NONE
CXD78_RS19185 3943235 .. 3943249 - -11.4  -3.90112   TGGCGGCCAAGGAAA               CGCTGG CCA CCAGCG               ACCTCAACACCGAGC  77 391
CXD78_RS19175 NONE
CXD78_RS19170 NONE
CXD78_RS19165 3939448 .. 3939459 -  -2.2  -3.18389   GGAAGATGAAAATCA                CGAA ACAC CTCG                 TTCATGCAGGCCCGG  42 95
CXD78_RS19160 3938565 .. 3938610 - -14.5  -3.70902   CGCGCGAGACCGAAA GCCCGGGTTTCCGGCAGCGCG TCGC CACGCAGCTGGCCACCCAGGC CACCCAGGCCATCCA  88 96
CXD78_RS19150 NONE
CXD78_RS19145 NONE
CXD78_RS19140 NONE
CXD78_RS19135 3933295 .. 3933308 -  -5.2  -3.10611   TTTACCCGAAGAAAC               GGGC CAGCAC GCCC                TGCCGCGGATGTCGG  49 382
CXD78_RS19130 NONE
CXD78_RS19125 NONE
CXD78_RS19120 NONE
CXD78_RS19115 3929534 .. 3929544 -  -8.2  -2.70932   CTCTGTCTGCAATGA                 GGGG GCG CCCC                 GGGTTCAGCGCCCGT  52 30
CXD78_RS19110 3928293 .. 3928308 -    -6  -2.55606   CTATATAGGATGAAT              GGGGTG CCTG CCCCCC               TGGGGACAGATACCG  46 163
CXD78_RS19105 3927127 .. 3927143 - -10.8  -3.19602   CGGGCTACACCAAGA              CGCCGC CCTAC GCGGCG              GGCATCGCCCTGCAG  64 155
CXD78_RS19095 3924856 .. 3924868 -  -3.3  -3.60475   AAGTGTGATCCGAAA                GCGGA CCG CCCAC                TTTGGTTGGGTCGGT  49 498
        trmB NONE
         pip NONE
        thiS NONE
        lysM NONE
CXD78_RS19040 3917419 .. 3917432 -  -5.9  -2.87931   GCCAGGTGCGACAGA               CCGGC GCGG GCCAG                GACGCGGCTGACGGT  48 330
CXD78_RS19020 3913536 .. 3913555 - -16.4  -5.04733   CAAGCATAAACAAAA            CGGCCGGC TTGC GCCGGCCG             TCCCGGGACGGTGAC 100 46
CXD78_RS19015 3912473 .. 3912487 -  -2.8  -3.01924   GATTCGCCCGCAAGA               TCCC ACCAATG GGGA               GTTGGGAACGCGTCT  42 101
CXD78_RS19010 3912054 .. 3912086 - -18.5  -5.81412   CGGAGGCAAAAAAAA     CGGCGCCCGTCCCT CTGTAC AGGG-CGGGCGCCG      GCACTTACGGCTGCG 100 63
CXD78_RS19005 3910334 .. 3910362 -  -7.4  -3.53012   GCGCGCTGCTCGAAA       GCGAATCGGC-CC GGCT GGCGGCGATCCGC        GGCACGGACGCCGAC  60 434
CXD78_RS18995 3907556 .. 3907579 -   -21  -2.71364   GCAGCCCGGCAAGCA          GGCGCCCGCC GGCA GGCGGGCGCC           TGGCGGCGTCAGCGC 100 34
CXD78_RS18990 3906878 .. 3906894 - -15.1  -5.53288   TTTAATCGAAAAAAA              CCGGCGC CCG GCGCCGG              ACCATGACTGCGTTC 100 39
CXD78_RS18985 3906595 .. 3906632 - -16.9  -2.65174   AAAATAAGTAATCTA   CCCGGGAGCCTGTCCCC GCAT GGGGACTGGCTCCCGCC    AACTTCAGCCGTCAG  80 104
CXD78_RS18935 3895207 .. 3895233 -  -9.2  -2.52516   CGCGGCACGACGAAG         CCGCCGCCACGC TAG GCCAGGCGCCGG         GGGCGCAGCTGTATC  51 513
        uvrA 3885152 .. 3885186 -  -2.8  -3.01712   GGCCTGGCGGCAAGA    TAGGGGGG--CGGGCG GTTCG CGTCCGTGCCGCCCTA    GTCTAGCGCCGTTTG  42 28
CXD78_RS18885 3884293 .. 3884316 -  -8.9  -3.53012   GGCGGCTGTTCGAAA          TGGGCTGAGG GGCTG CCTC-GCCCA          TGCGGCCTACCCCAA  62 183
CXD78_RS18865 3878549 .. 3878574 -  -2.4  -3.70149   TCGACAGTATCGAAA         GCCAGGCGGAC GATTG GGCCGCA-GGC         CTGGATGTCGATATC  53 331
CXD78_RS18855 NONE
        lysA 3876939 .. 3876968 - -22.3  -3.53012   GCGCCGCCCTTCAAA       GACAATGCCCCGC AGAT GCGGGGCATTGTC        TTTGGCAGGCCTTGC 100 48
CXD78_RS18830 NONE
        hemB NONE
CXD78_RS18805 3866307 .. 3866337 - -15.3  -3.13164   CCCGTAAGCAGTCAA       GCGCGGTGGGCGC GCCAT GCGCCCGCCGCGA       TGTTTTCATGCATCG  78 453
CXD78_RS18705 3855475 .. 3855495 - -15.4  -4.72272   GCCGGCCATGAAAAA            CCCCGCCG GATCG CGGCGGGG            TTGGCCTGAGCCCGG 100 50
CXD78_RS18700 3854448 .. 3854470 - -17.8  -3.72576   CGCTCCGGCATGAAA           CGGCAAGAGC CTG GCTCTTGCCG           TTTTTTTGTTCATCG  93 125
CXD78_RS18615 3842785 .. 3842806 - -15.1  -3.14132   TCTGTTCTTCACCAA           GGCCACGCC TTCG GGCGCGGCC            TAGCTGTGAACTGTC  76 25
CXD78_RS18590 3837202 .. 3837233 -  -2.2  -4.68103   CCAACTGGAACAAAA     GGC-CCGCCACGAC TTCGAG GACGC-GCGGCGCC      AGGCCGTGCAATCGG  76 357
CXD78_RS18550 3826626 .. 3826660 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS18525 3822923 .. 3822972 -  -7.9  -3.91084   GCAGCCTGAAGGAAA CCCGGCTGCCGC-TCACGCC-GCC GCCCG AGCAGGCATGACGCCGC-GCCAGG CCGTTCAGGTCAGCA  68 30
        ilvB 3820432 .. 3820471 -  -4.9  -3.76224   TGGCCAGCGACGAAA CCGCC-TTCATCACC-GGC GCCT GCCTGGAGGTGGATGGCGG  CCGCTGCGTGTAGGC  58 94
CXD78_RS18475 3808841 .. 3808894 -  -9.4  -3.25823   CTGGGGCCACAGCAA CAGGACGT-GGCGGCCGCGGTCGGCG ATTT CGCCCTGCGCCGC-GCCGACGGCCTG TGGGCCTACCAATTG  61 390
CXD78_RS18445 3800340 .. 3800367 -  -8.4  -3.25823   CCTGCCGCACATCAA        GACCGGCAA-GGC CGT GCCGCTGGCGGTC        ACCACCGCCGGCCGG  59 351
CXD78_RS18435 3798291 .. 3798312 -  -4.3  -3.05596   GACGCCGGGACGGAA           GTCCTGCAT CGCC ATGCCGGCC            CCGTCCTTACTTGCG  45 32
CXD78_RS18430 3798033 .. 3798057 - -17.1  -3.20991   TCGAAGTGAAGTGAA          TGACGCCGGGC GCG GCCCGGCGTCG          GGTCAGCCTTGCTCC  84 28
CXD78_RS18400 3789179 .. 3789223 -    -2  -3.17723   GTATTTCGAAGGCAA GCTCAAGCGCCGCACCGATGCC GAC GGCATCG-TGCGTTTCCAG-GC GGCGTAGCGGGCGCG  42 56
CXD78_RS18390 3787632 .. 3787657 - -13.5  -3.38522   GATGCAGTGCAAATA         TTACGTTTACG TAAA CGTAAACGTAA          AGTTGAGTCGGGTTT  75 91
CXD78_RS18345 3778707 .. 3778728 - -11.5  -3.57144   CGTCGTATGCCGAAA           GGGGCTGCC GTGA GGCAGCCTC            TTTTGCTTGGGGGCG  72 95
        rpmH 3773075 .. 3773091 -  -2.1  -2.78384   TCCGCCTGGATTAGA              CGGCCAG ACG CTTGCGG              CCCTTGGCGCGGCGG  38 4
CXD78_RS18320 3772574 .. 3772618 -  -2.8  -4.12902   GAAGTACCGGTAAAA CCGGATCGGGGCGATAAGCAG TCTC CTGATCATCGCGCT-ATCCGT GTGAAGTGAGCATCT  59 10
        yidD NONE
        yidC 3770557 .. 3770576 - -16.4  -5.55664   CCAGGACGAAAAAAA            CGGCGCCC CGCA GGGCGCCG             TTTCGTGGCTGGCTC 100 43
CXD78_RS18295 3767995 .. 3768040 - -14.8  -2.78384   CGGCGCCGCAGGACA CGGCCG-AGGTCGCCGGCCGCAA GGC CTGAGGCCGGC--CCTACGGCCG GGCCGTGTCGCTCTG  72 17
CXD78_RS18285 3765344 .. 3765370 -  -7.1  -2.82516   CCCTGTACGACCAGA         GCGCGCCGGCC GACGA GGCCGAGGCGT         TCCGGCGCAGCGGCT  50 68
CXD78_RS18275 3762537 .. 3762569 -  -3.3  -3.28791   ATGTGCGGCCCACAA     GTACGGCGGGATTG AGGCCG CCA-CCCGCCGCGC      CATCGTCCGTGCCGC  47 393
CXD78_RS18185 3752917 .. 3752932 -  -8.2  -3.09273   GCGCGCCAATAGATA              GGCCAC CACA GCGGCC               CCCACCAGGATCAGG  56 199
CXD78_RS18180 3751931 .. 3751955 -   -15   -4.2828   GTCCACCCATGAAAA         CCCCGCCAGGC CTGC GCC-GGCGGGG          TTTTTCACAAGGGTG  95 52
CXD78_RS18155 3748327 .. 3748342 -    -6  -3.15579   CCAACGCCCCAGCAA              GCGGCG TGCC CGACGC               TCGCGGAAGATCCGC  51 71
CXD78_RS18150 NONE
CXD78_RS18145 3747873 .. 3747889 -  -3.5  -5.00616   TTGCGTTTGAAAAAA              TCGCCTG CGC CCGGCGC              GATGCCGGACAGCGT  81 127
CXD78_RS18140 3740602 .. 3740638 - -11.3  -3.09785   GCATACGCCAATATA    GCCGCAATGCCGGCCGC CGA GCGGCCGGCCCGGCCCC    CGGTCAATACGCCAC  64 29
CXD78_RS18135 3739901 .. 3739916 - -11.8  -5.10461   CGCACGCAAGAAAAA              CGGCCC GCAA GGGCCG               TCTCAAAACGTGGGC 100 118
CXD78_RS18130 NONE
CXD78_RS18125 NONE
CXD78_RS18120 NONE
CXD78_RS18115 NONE
CXD78_RS18110 NONE
CXD78_RS18105 3733787 .. 3733803 -  -5.1  -3.78034   CATCGACATCAAGAA              GCTGG GACGTAT CCAGC              GCCCTGGCCACCGGG  58 494
CXD78_RS18085 NONE
CXD78_RS18080 3729846 .. 3729864 - -10.3  -3.07222   AGGAGCACCTGAAGA             TCCTCGC GGCCT GCGAGGA             AGGCAATGCCGCGCG  59 110
CXD78_RS18060 NONE
        rimO 3724457 .. 3724476 - -11.4  -3.28712   TTGGCTGCGCTACAA            GCGCCACG CCTT CATGGCGC             GCGGCTTGAGCGCCG  66 434
CXD78_RS18045 NONE
CXD78_RS18040 NONE
CXD78_RS18035 NONE
CXD78_RS18030 3721515 .. 3721535 - -11.8  -3.36492   GCTGGAATTGCAGAA            GGCCGGCG GCAAG CGCCAGCC            GGTGGACGTCTTCGT  66 82
CXD78_RS18000 NONE
        dprA NONE
CXD78_RS17990 3714661 .. 3714689 -  -4.3  -3.20723   TGTTCATGAATGGAA        CGGGCGATGCGGC GAG GCCGCGTAGCATG        AGGAGGGCGTATGGG  47 131
CXD78_RS17985 3713928 .. 3713964 -  -2.2  -4.28254   GCTCAAGAGCGAAAA   CCCCAACGT-GCGCCGCA TCC TG-GGCGTGACGCCGGGC   GCCGGCGCCAACCTG  65 237
CXD78_RS17965 3709381 .. 3709406 - -10.3  -3.35679   CGTCGTCACCGAGAA         CGGCGTGGCGC AGAT GCGCCAGGTCG          ACGGCGTGGCCGTGC  63 290
CXD78_RS17950 3707173 .. 3707207 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS17920 3703371 .. 3703385 -  -8.5  -3.14132   CCTGCGCTGGATCAA               CCGCC TGTGC GGCGG               CATGCTGGTCGTGCT  56 123
        rsmB NONE
CXD78_RS17905 NONE
CXD78_RS17900 NONE
CXD78_RS17895 NONE
        trkA NONE
CXD78_RS17885 3694809 .. 3694835 - -11.4  -2.70232   CTGAATAGTACACCA         CCGCGCGGGCAG CGG CCGCGCGCGCCG         CTATTTGCGCCAGAA  62 26
CXD78_RS17880 3693808 .. 3693850 -  -3.2  -3.14344   GACCCGCGCGAGGAA TTCCATGCAGCCTGGCATGC GCC GCACGCCACGCTGGTCGCCA CCATGCCGGACGACA  45 398
CXD78_RS17870 3692310 .. 3692345 -  -2.3  -3.54424   CGGGACGCGCCGAAA    CCCTTGCCATGCGGG ACTTTA CGCGCCCGGCCAGCG     ACCCGCGGCAGTCCG  48 167
CXD78_RS17865 NONE
CXD78_RS17860 3690140 .. 3690186 -  -8.6  -3.53224   CAGCGCGCGCGCAAA CGCCAGCAGGTCCTCGGCCTG CACATC CAGGCCATAGTCCAGCTG-CG GCCCCGACTGCGACA  62 262
CXD78_RS17850 NONE
CXD78_RS17845 3687628 .. 3687639 -  -7.2  -3.68351   GCGTCACCAGCGAAA                CGCC AGAC GGCG                 AGATCGCCGCATCCA  64 278
CXD78_RS17820 NONE
CXD78_RS17815 NONE
CXD78_RS17810 NONE
CXD78_RS17805 NONE
CXD78_RS17800 NONE
CXD78_RS17795 NONE
CXD78_RS17790 NONE
CXD78_RS17785 NONE
CXD78_RS17780 3673419 .. 3673438 - -13.6  -4.52589   TTCCCTTAGATAAAA            CGGGCGTT ACCA AACGCCCG             GCAGGTAACCACTAT 100 37
CXD78_RS17775 3671746 .. 3671760 - -11.4  -3.09635   AGCCTGAGCATCGAA               GTGGCC TAC GGCCAC               GCCTGGCGGGCGCCG  62 125
CXD78_RS17765 NONE
CXD78_RS17760 3669135 .. 3669156 - -10.1  -3.05384   GCTTTCCGCAGGTAA           TCACCGCCA TCAT CGGCGGCGA            CGTGCACGCCGGTTT  59 423
CXD78_RS17730 NONE
CXD78_RS17725 NONE
CXD78_RS17720 NONE
CXD78_RS17715 3661178 .. 3661212 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS17705 3659242 .. 3659278 - -23.8  -2.71693   GAGGAAGGAAAGTCA    GCGGGTGCCTGTCCCC CGTGC GGGGACAGGCACCCGG    GTGGGGGGTTTACAT 100 35
CXD78_RS17690 NONE
CXD78_RS17685 3654550 .. 3654581 -   -15  -2.60075   GCGGGTCGAATGAAG      GCAGCCGCGCCGCC CGAG GGCGGCGCGTTCGC       ATGAGGACGAGGCCC  71 45
CXD78_RS17600 NONE
CXD78_RS17595 NONE
CXD78_RS17590 NONE
CXD78_RS17585 NONE
CXD78_RS17580 NONE
CXD78_RS17575 NONE
CXD78_RS17570 NONE
CXD78_RS17565 NONE
CXD78_RS17560 3627165 .. 3627193 -  -3.7  -3.31726   GGTCGCCACAGAATA       CCTGCGCGCTGG TCCAGG CCGGCGC-CGGG        GTGGCGCTGGTGGAC  47 199
CXD78_RS17550 3625281 .. 3625291 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS17545 3624209 .. 3624237 - -10.3  -2.57026   TAGAGTGACACCAAT       GC-GCCGGCACGG CAAGC CCG-GCCGGCCGC       TTTCCCCCATCCAGA  57 65
CXD78_RS17510 3617729 .. 3617773 -    -4  -2.87132   GGGTCGGCCGATACA TCGCAGGTA-TTGCCGCCGCG CGGC CGCGGCGTCATCCGCCGGCGG CCCCCGCGCCACGCC  43 12
CXD78_RS17505 NONE
CXD78_RS17500 NONE
CXD78_RS17495 3614391 .. 3614436 -  -8.9  -3.32769   GGCCGAAACCATCAA GGTCGGCATCGCCCTGGCCGTG CAT CCCGAC-AACGCCACGCCGACC ACCGCCAACTTCGTC  59 105
CXD78_RS17485 NONE
CXD78_RS17480 3611142 .. 3611164 - -10.4  -4.69622   AGACAAGGGGAAAAA           TCGCTGCGCC GGC GGCGCGGCGT           GCGGACGACGCTAGG  93 36
CXD78_RS17475 3609693 .. 3609708 -  -2.6  -4.08216   GTATTGCGTGGAAAA              CATG-AG CTA CTACATG              GTGTCGCGCTTCCTG  58 233
CXD78_RS17440 3603748 .. 3603763 -    -6   -3.5774   ATCGAATCGTGGAAA              CCGCTG TTCG CCGCGG               CGCTTTGAGCGGTAA  56 63
CXD78_RS17410 3594428 .. 3594449 -  -5.7  -3.30771   GCACATTCCGTACAA           GGGCAGCGC CGCG GCGCTTACC            GATGTCCTGAGCGGG  51 409
CXD78_RS17385 3590962 .. 3590991 -  -7.7  -3.14132   GCCGGGGTGTACGAA       GAGCTGCTGGGCG TGTG CGGCGAGCGGCTC        GCGGCGCTCAGGCAG  54 33
CXD78_RS17375 NONE
CXD78_RS17370 3588604 .. 3588624 -  -3.1  -2.77192   AAGGCCGGCAAGAAC            GATCTGCAG CAG CCGCTGCTC            TATGGCTCGGTGCTG  39 97
CXD78_RS17345 3581603 .. 3581629 - -23.8  -4.79223   GCACAGCAGGAAAAA         GCGGGTTGCGGC GCT GCCGCAACCCGC         TTTGTGCGTCAGTGA 100 34
CXD78_RS17300 NONE
CXD78_RS17295 3570032 .. 3570069 -  -8.3  -3.28924   CATGGCTGTCTACAA   CGGCGTGGCCTACCTGG CCGG CCAGGTACCCGACGACG    CCTCGCTGGACATGG  59 441
CXD78_RS17280 NONE
CXD78_RS17275 3567376 .. 3567419 -  -3.1  -4.58685   AAATGTTGTGAAAAA GCGA-CCCCCTCATGGC-GGA TTCC CCCTGCCATAGGGGGGATTAC CAGTAGTTTTCGACC  71 22
        phaZ 3566006 .. 3566021 - -11.8   -4.2687   CGTAAAAAGCAGAAA              CGGGCC AGGC GGCCCG               TTGCAGGGAGCGCGC  91 48
        rsxB NONE
         nth 3564618 .. 3564632 -  -3.4  -3.88985   AAAACGCTTCAGAAA               CCAGGG TTT CCACGG               TGTTTCCCACGATGT  56 108
CXD78_RS17255 NONE
CXD78_RS17250 NONE
CXD78_RS17245 3561679 .. 3561689 -  -8.2  -2.52516   TGCCGGATGAGCAAG                 GCCG TGT CGGC                 TTCCTTCAGGAGGTT  51 39
CXD78_RS17240 NONE
CXD78_RS17235 NONE
CXD78_RS17230 NONE
CXD78_RS17225 3557740 .. 3557774 - -30.1  -3.09516   GCGCCCAGGACTGAA     CGCTGGCGGCGCGGC CTGGC GCCGCGCCGCCAGCG     TGCGCGCGGGTCAGC 100 36
        msrB NONE
CXD78_RS17185 NONE
CXD78_RS17180 NONE
CXD78_RS17175 3549301 .. 3549330 - -19.5  -4.13767   CCCGGCAGCCGAAAA       CAAAATTGCCCGC GAAA GCGGGCAATTTTG        TTGATGGCGATGGCT 100 47
        lplT 3540693 .. 3540721 -  -6.5  -3.74747   CCAAGCCCGAGGAAA        TCGCCGCCTGCAG TCC CTACCTGCGGCGC        CAGATTGCCCTGCTG  61 278
        ompR NONE
CXD78_RS17135 NONE
CXD78_RS17130 3536508 .. 3536518 -  -4.6  -3.10677   AATTAAGGCAGGCAA                 GGCC TCA AGCC                 CTAAATTCTACGCTA  47 38
CXD78_RS17125 3535895 .. 3535911 - -10.8  -3.95584   TCTGGAGCAATGAAA              GCCCGG ACGAG CCGGGC              CGGGGAAATTACAGC  79 34
CXD78_RS17120 3535279 .. 3535331 - -15.5  -2.79188   GAGGGAAGGGAATGA GTGCCGG-C-CCCGCGCAGG-GGCCG GCTG CGGCCGCCGGCGGGGGAGGCCGGCGC ACCGCGGGGGGCGCT  75 40
CXD78_RS17110 3532619 .. 3532635 -  -5.1  -3.78034   CATCGACATCAAGAA              GCTGG GACGTAT CCAGC              GCCCTGGCCACCGGG  58 494
CXD78_RS17090 NONE
CXD78_RS17085 3528867 .. 3528893 -  -8.7  -3.53012   CTGCGGTGCGCCAAA        GCGCGC-CGC AGGCCGGG GCGGGCGCGC         CTATTCGAGCTGGAT  62 26
CXD78_RS17080 3527786 .. 3527822 -   -16   -4.2558   GATTGTCCAGGAAAA   CGCGCCAATTCCCGC TTGATTGG GCGGGA-TTGGCGCG    CAATGGGCAGGCGCC  95 41
CXD78_RS17075 3526897 .. 3526907 -  -2.4  -3.01497   GCAGCCGAAAGCATA                 GCCG TTC CCGC                 TCCGGCCGCCTTACT  41 84
CXD78_RS17070 3525463 .. 3525495 -  -3.2  -4.72272   GTTCTCCACGAAAAA     GGGGGCG-GAACCGG AGGG CCGGCGCGCGCCGGC      GGCGTGCGCCGGCCG  75 476
CXD78_RS17060 NONE
        argF 3523158 .. 3523180 -  -6.3  -2.58714   TTTGACAGCAACGGA           CCGTCAAAC AAGAA GTCTAACGG           GGCATTTTAGCGCTT  46 112
        argG 3521734 .. 3521763 - -23.7  -4.08394   ACACCTGCGGCAAAA       GGGTGCCTGTCCC GGCA GGGACAGGCACCC        TCGCGCGGTTGCCGC 100 41
CXD78_RS16985 3508674 .. 3508710 - -20.4  -3.34398   GCGGCGCGGCAAAGA   GAAAGCCCCGG-CAATC ATGC GATTGACCGGGGCTTTC    ATGAAGGCAGGCCAT 100 60
CXD78_RS16975 3507738 .. 3507760 - -12.7  -5.63517   GGCGCAAAGAAAAAA          CCCCGG-CGC TTGC GCGACCGGGG           TTTTTGGGCACATCA 100 65
CXD78_RS16965 NONE
CXD78_RS16960 3504785 .. 3504795 -  -4.6  -2.92371   ATGGAGGCAACCATA                 CCAG ATG CCGG                 TTTACGGCTGGCTGG  44 53
CXD78_RS16955 3503041 .. 3503051 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS16950 3501786 .. 3501818 -  -3.2  -3.05844   TGTTGCACGCCAAGA      CGGCGGTGGTCGAC GGCGT GTGGTCCACGGTCG      GGTCGAGCAACATGG  43 244
        egtD 3498349 .. 3498363 -    -7  -2.71011   ACGGGCGGGTAAGCA               GGCCGC GCT GCGGAC               GTGGGTGGCGGGCGC  48 366
CXD78_RS16925 3497151 .. 3497182 - -20.4  -4.37886   TCATCGCGCACAAAA      CAAAATGCCCGCAA GCGA TTGCGGGCATTTTG       TTTTGAATTCTCTGG 100 38
CXD78_RS16910 3495660 .. 3495700 -  -5.8  -3.58536   AAATTGACGGCCAAA  GCCGCCTCAGTCCCCGCG AATGG CGCGCCGGCCGCGGCGGT  AGACTGGCGCAGCCT  57 309
CXD78_RS16900 3494891 .. 3494946 - -13.9  -4.11216   CCGTTACGGTTAAAA GTCGCCCTGCGCGGCCCTGGCGCCGA ATATG TCCACGATAGGG-CGCGCAGGGCATC AATAGGCAAGACTGG  85 77
CXD78_RS16895 3493395 .. 3493405 -  -8.2  -3.14132   CCGGCCGCTGACGAA                 GCGC GCC GCGC                 TAGTGCTGGCCGGAC  56 25
CXD78_RS16865 3487492 .. 3487511 -  -8.6  -3.68222   TGCGAATCTGAATAA            TGCGAAGC ACGC GCTTCACA             ATATGCATATAGGCA  65 139
CXD78_RS16860 3487155 .. 3487176 -  -3.6  -3.86015   TATTGGGCGGATAAA           GGGCCAGCC CGGAT GGC-GGCCG           CCGGACCGCCGGGAT  57 65
CXD78_RS16855 3485998 .. 3486012 -  -2.7  -2.69151   TGGCTTCAGATACTA               CGGGG CTCAT CGCCG               CACTCCTGGCAGGAA  40 82
CXD78_RS16850 NONE
CXD78_RS16845 NONE
CXD78_RS16840 NONE
CXD78_RS16835 3482114 .. 3482129 -  -7.5  -2.87132   CCCCCCTCGCAGATA              CGGCG CCTTGC CGCCG               GGGCGGCGAGACCGG  52 139
CXD78_RS16830 NONE
        groL 3479861 .. 3479884 - -19.6  -4.86621   AGCTCCAATGAAAAA          CCCCGCCAGG CGAA CCTGGCGGGG           TTTTTTTTTGGGAAG 100 87
CXD78_RS16815 NONE
CXD78_RS16810 3475116 .. 3475129 -  -9.5  -3.53012   CGGCGCGCTTGGAAA               CGGCG GCGC CGCCG                CTCAGTCCAGGACGA  64 27
CXD78_RS16805 NONE
        pyrF 3472892 .. 3472927 - -20.4  -2.59748   CACCCTGAGAAGTCA    GCGGGTGCCAGTCCCC CTTC GGGGACAGGCACCCGG     GGGGTTACGTTCTTA  95 30
CXD78_RS16765 NONE
CXD78_RS16760 NONE
        phnD 3465249 .. 3465286 - -11.3  -3.02511   TGTACTCCTGGAACA   CCATGCCGATGCGCCG GCGCGCG CGGCGCAGCGAC-TGG   CCGCGCACGCGGGCC  62 261
CXD78_RS16745 3464072 .. 3464103 -  -6.7  -3.78329   GTCGAGCAATTGAAA      GGCGCGTTCGAT GTCGGCCGG ATCGAA-GCGCC      GCATCCAGGTATTGA  64 101
        phnE NONE
        phnE 3461835 .. 3461855 -  -3.9  -3.59979   CCCGCCGAGCCGAAA            GCCTAGGAT AGT ACCCAAAGC            TAACCCGGAAATTGA  51 165
        rsmD NONE
CXD78_RS16710 NONE
CXD78_RS16705 3457474 .. 3457498 - -15.7   -3.9941   TGGCCGACAACGAAA          GCGCGCCGG TGACAGG CCGGCGCGC          CGCGAGGGGGGGAGG  91 59
        benE 3456289 .. 3456315 - -12.2  -3.57144   TGCCGGATCCTGAAA         GTGCACCCCGAC ATG GCCGAGGTGCGC         TGGCCGTCGTAGGCC  74 45
CXD78_RS16685 NONE
CXD78_RS16680 3452115 .. 3452131 - -13.7  -4.72272   GCGGCCCACGAAAAA              GCCCTCC AGC GGAGGGC              TTTTTTTCTGAGGCG 100 49
CXD78_RS16670 3449720 .. 3449762 -  -3.3  -3.66874   TCAACCGCATCGAAA CCGACTATGCGCG-GCGC TATCAGGC GCGCGCGCGCGTGCTCAG GCTGACCGACGGCGA  51 504
CXD78_RS16635 3439490 .. 3439504 -    -7  -3.41636   AAGCAAGGCAAGGAA               CGCGAC GAG GGCGCG               CCCGGAACGTCGGCG  56 172
CXD78_RS16630 NONE
CXD78_RS16625 3437372 .. 3437415 - -10.9  -2.57344   CAGTCTTGCGACAAT CGGCACGGCAGTGGGGGCGGC CGGG GCCGCCCGC-CGGGC-TGCCG TCAGTTGAGGTTGAT  59 26
CXD78_RS16620 NONE
CXD78_RS16615 3434803 .. 3434813 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 110
CXD78_RS16610 3433607 .. 3433620 -  -3.7  -2.71791   AGGTCTTGTTGAAAC               GCCGG CCGG CCCGC                TGCAGGAAGGGCCTG  41 204
CXD78_RS16600 3433306 .. 3433334 -  -3.8  -5.55769   GGCTACAAGAAAAAA       GGAAGCACGGCAG GTAA CCGCTA-GCTTCC        CTTTTTGGTGTTTGG  95 38
CXD78_RS16595 3433183 .. 3433202 -  -6.3  -3.94877   ATCCTGGAACAAGAA            GGCTCGC GACGCG GCGGGCC             TTGAAGTGTTTGGAG  64 35
CXD78_RS16590 3432698 .. 3432717 -  -7.1  -3.14468   CGCCATTATAGGCAA            GCGCGCGC GCCGG GC-CGCGC            TACGGCCGGATCACG  52 25
CXD78_RS16585 NONE
CXD78_RS16575 NONE
CXD78_RS16570 3429996 .. 3430008 -  -4.7  -3.54424   TTCGACCGGGGGAAA                CGGCG TGT CGGCG                GCCAGCCAGGGCAGT  52 50
CXD78_RS16560 3428461 .. 3428498 -  -3.2  -3.00923   GTGGAAGAGGATAGA   CATGGGGCGGAATTGT AGATCG ACTTTGCCGCCCCGCG    CGTGCTCAGGGCGGC  42 31
CXD78_RS16555 3427378 .. 3427390 -  -6.2  -4.74103   TGCCCAAGGCAAAAA                GCCC TCTTG GGGC                CCATGCCCGCTCGGG  82 49
CXD78_RS16545 3425247 .. 3425282 -  -8.8  -3.54424   TCGCATTCCGCGAAA    CGG-CGGGCGCGCAGGC CTC GCCCGATCGGCCGGCCG    GGCCGCGCGATGCGC  62 67
CXD78_RS16515 3416392 .. 3416409 - -10.5  -3.21218   ACGCCCGAGCAGGAA             GGGCGCA GCAA CGCGCCC              AAGCGCCAACTGGCA  60 82
CXD78_RS16495 NONE
CXD78_RS16490 NONE
CXD78_RS16485 3411910 .. 3411922 -  -2.6  -3.07816   TCTGGAGGCAGCCAA                CGAG ATCCA CCCG                CCCTTAGTGGAGACG  41 29
CXD78_RS16480 3410503 .. 3410521 -  -6.7  -3.77832   GCGCAAAGCGAAGAA            CGCACCGG CCAC CCGGTG-G             ATGCGCGCCGCAACA  61 313
        galU 3407988 .. 3408006 -  -4.4  -2.71924   CATGGCGCCGCAAAT             GGTGGCCG GCG CGGTCATC             GCCTTTACCGAGCGC  40 299
CXD78_RS16450 3403797 .. 3403823 -  -9.5  -2.62184   CCCGGCGGTACAGCA        GCTGCGCTTCGGC GCC GCCG-AGC-CAGC        CGGCGCGCGCGCCTG  55 143
CXD78_RS16435 3399912 .. 3399926 -  -2.8  -4.09685   CGCCAGCCCCTAAAA               TGCC CCTGTCC GGCA               CGCGCCGCTTTTCCG  59 521
CXD78_RS16425 NONE
        dusB NONE
CXD78_RS16415 NONE
        purH NONE
        ruvC NONE
        ruvA 3394345 .. 3394393 - -10.8  -3.30124   GCTCACGCGCGACAA CGTGGCCAGCGGCGCCGCGCCCTC GGG GTTGGC-C-GCGCCGCCCGCCGCG CTGGAGGCGGTCGCG  66 83
        ruvB 3391002 .. 3391036 - -14.9  -4.84359   CGAGGCCGAGAAAAA    GCCGCGCAGCTCGCGC GCGG GCGCCCGC-GCGCGGC     CCGACCCCATCGACC 100 272
CXD78_RS16370 NONE
CXD78_RS16365 3386877 .. 3386912 -  -9.1  -3.03124   GGCCATGCGTGAACA   TGC--CCAGGCGCGC GCGCAATG GCGCGCCTGGATGCA    GGACTACGATGCGTT  55 336
CXD78_RS16350 NONE
CXD78_RS16345 NONE
CXD78_RS16340 NONE
CXD78_RS16335 3381811 .. 3381854 -   -21  -3.53091   AGCCTGGCGGGCAAA GTCAGCGGGTGCCTGTCCCC CTGC GGGGACAGGCACCCGGGGAT CAGTCTATCTTGTAG 100 25
CXD78_RS16330 NONE
CXD78_RS16325 3379246 .. 3379259 -  -2.4  -4.10144   TGAAGACAACAAGAA               CGAT CCGCGC ATCG                CGCGCTTTATCAAGG  58 151
CXD78_RS16315 3377265 .. 3377275 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS16310 3375748 .. 3375774 -  -5.9  -4.14243   CACTCCAGCGCAAAA        CCAACA-GTGCC CTGG GGCACGTGTTGC         AGAGACCCCACTCTA  66 512
CXD78_RS16280 3371969 .. 3371982 -  -5.9  -6.06723   GGGGCGAAAAAAAAA               CCGCC CGAA AGCGG                TTGATCAATCCTGTG 100 468
CXD78_RS16275 NONE
CXD78_RS16270 NONE
CXD78_RS16265 3368556 .. 3368590 -  -2.6  -2.74012   TCAGCAGCGCAATGA     TCCGGCGCACCACCCC GTT GCTGTAGCGCACCAGG     TCGATGGCGTGCCGA  38 50
CXD78_RS16260 NONE
CXD78_RS16255 3367207 .. 3367231 - -15.7  -4.67038   GCCCCAAAAGCAAAA          GCCCCACTGGC TCG GCCAGCAGGGC          TTAGAAAGAAGAAGG 100 77
CXD78_RS16250 3366379 .. 3366397 -  -3.9  -3.28924   GATGGCTTGGTAGAA            CGA-TTCC TGGA GGAAGTCG             CCTTCGAAGCCGGCC  47 186
CXD78_RS16235 NONE
CXD78_RS16230 3364218 .. 3364235 - -10.5  -3.65351   GCAGGCTGACGGAAA             CCCCCGC GTGA GCAGGGG              CAACCGTCAATCGGC  70 43
CXD78_RS16225 NONE
CXD78_RS16220 NONE
CXD78_RS16215 NONE
CXD78_RS16210 NONE
CXD78_RS16205 NONE
CXD78_RS16200 3361732 .. 3361745 -  -9.5  -5.46657   GAGGGCAATAAAAAA               CCGCC ATGT GGCGG                GTTCCAGTTGCGCCC 100 69
CXD78_RS16195 NONE
CXD78_RS16190 NONE
CXD78_RS16185 NONE
CXD78_RS16180 NONE
CXD78_RS16175 3357334 .. 3357354 -  -3.1  -5.32944   CGGATAATGAAAAAA            TGCCGCGAC GAG ATCCCGGCG            TTCGGGATTACTCAT  89 33
CXD78_RS16170 NONE
CXD78_RS16165 NONE
CXD78_RS16160 NONE
CXD78_RS16155 NONE
CXD78_RS16150 3351810 .. 3351822 -  -6.2  -5.80817   CTCAACACAAAAAAA                GCCC CCTAT GGGC                CCGTTCATTCATTGG 100 30
CXD78_RS16145 NONE
CXD78_RS16140 NONE
CXD78_RS16135 NONE
CXD78_RS16130 NONE
CXD78_RS16125 3349019 .. 3349039 -  -9.7  -3.54741   GAGCAGCTGGTGAAA            GCCAGCC GCTTTCA GGCTGGC            GACCGCGTGCTGTTC  64 405
CXD78_RS16110 3348378 .. 3348388 -  -8.2  -2.78216   CATCGTCACGAACGA                 CGCC CTG GGCG                 GCATGGTCGACGTGC  52 235
CXD78_RS16085 3344488 .. 3344506 -    -3  -2.65264   TCACGATCGATAGGA             GCCCTG TGGCTGC CGGGGC             GGGCTGGCGCCCGCC  39 48
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA NONE
        tolB 3340554 .. 3340573 -  -2.8  -2.54325   CCTTTGCAAAGAGAG            TCACACGT GTTA ACGGGTAA             AAGGGCCCCACGTTG  39 15
         pal 3339974 .. 3340003 - -21.5  -4.54727   GGTCTGAAACGAAAA       CGTCGGGACGGCC GGAT GACCGTCCCGACG        CGTGGTGGGGCTGCT 100 56
        ybgF NONE
CXD78_RS16045 NONE
CXD78_RS16040 3337296 .. 3337323 - -10.5  -4.15453   GAAGTCAGCGGAAAA        CGCGCCGCGGCC GGGCT GGCGGCGG-GCG        AGGTGCTCATCCTAT  78 120
CXD78_RS16035 NONE
CXD78_RS16030 3335915 .. 3335926 -  -2.2  -3.21099   GGGCGTGACCAGGAA                GC-CG TGG CGCGC                GTAGTGCAGGGCCGG  42 465
CXD78_RS16020 NONE
CXD78_RS16015 3333757 .. 3333811 -  -2.5  -2.70932   CCTGTTCTGGAAGCA TCTGGGCCACG-CCGGCGCCAACACC TTGC GGGCCTGGGGCCGGGCCTGGACCGGC GGGCTGCTGGCGCGC  38 500
CXD78_RS16005 3330633 .. 3330647 -  -4.2  -3.64703   TCGCGCTGACCGAAA               GCGG GCACACG CCGC               TGATCATGTCGCGCA  51 297
CXD78_RS15995 3328137 .. 3328149 -  -9.1  -2.52464   GCGTGGCGCAATTCA                TCGGC CTG GCCGA                CGCCTTGCTGGCGGC  51 100
CXD78_RS15975 NONE
CXD78_RS15970 3321452 .. 3321468 -  -2.2  -3.53012   TGTCTTCGGGCCAAA              GTGGTA GAGGA TACCGC              GTTGCAGCCTCCTTG  48 94
CXD78_RS15965 3320310 .. 3320329 - -16.4  -3.15147   GTCAAGCAATAGACA            GGGCGGCG CGTC CGCCGCCC             ATGCCGGCTGGCGGA  81 388
CXD78_RS15940 3316821 .. 3316835 -  -3.4  -4.07687   ACCGGGCGGCGAAAA               CGCCGG TTT CCGAGG               CCGACGCCAAGCGCG  60 247
CXD78_RS15905 3307579 .. 3307593 -  -2.1  -3.84406   CGCCTACCAGAAGAA               GATCG GCCCG CAATC               GTCGCTGCGCGAGCG  56 430
        nspC 3304649 .. 3304668 -  -4.2  -3.18366   GCTTCAATCAACAGA            GCCAGTTCC TCA GGA-CAGGC            TGTCTACGTAATCCT  45 15
CXD78_RS15885 3303255 .. 3303265 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 119
CXD78_RS15880 3302120 .. 3302146 - -10.1  -3.06133   GAATGTTCGATTGAA         GCGGTAGCCGT ACGAA ACGGCCACAGC         GTTGCGCTGCCGGCA  60 130
CXD78_RS15875 3301396 .. 3301439 -  -2.8  -3.91897   CGGGTCACGTACAAA TGGTAGGGAACGCGGCCGGC GTCA GCGCGCCGCTTCCGCGACCG CCTCGATGGTGATGC  58 3
CXD78_RS15860 3296725 .. 3296741 -  -5.1  -3.78034   CATCGACATCAAGAA              GCTGG GACGTAT CCAGC              GCCCTGGCCACCGGG  58 494
CXD78_RS15840 NONE
CXD78_RS15835 3292032 .. 3292060 -  -7.9  -3.07113   TACTACCTGATGGAA        CCGGGCAGTGGCG AAG CGCCGCCGCGCGC        GCTGCCGCCGTGGCC  52 295
CXD78_RS15825 3290404 .. 3290438 -  -8.5  -3.06183   TGCATCGGCACGGAA     TTGCGCGCGGTCC TGCCGGTAT GGTCGGCGCGCAA     GCAATGGCTGGCCGA  55 501
CXD78_RS15800 3285984 .. 3286004 -  -8.2  -3.12999   GTATCCGACAGGTAA            GGGAGCCG GCCGG CGGCTCGC            ACACTCATACCCGGC  56 101
CXD78_RS15795 NONE
CXD78_RS15790 3284769 .. 3284794 - -13.3  -5.15969   CGCGAACGCAAAAAA         GCCGACACCAC GTTT GCGGTATCGGC          TTTCGCTATGCGCCC 100 108
CXD78_RS15780 NONE
CXD78_RS15775 NONE
CXD78_RS15770 3278138 .. 3278172 - -13.5  -2.99947   GAATCTTCACAGATA    GCC-GGCCTCGCCGGC CGGC GCCGCCGATGCCAGGC     GTGCGGCGCCCAATG  70 152
CXD78_RS15760 NONE
CXD78_RS15755 3274595 .. 3274610 -  -7.5  -3.14211   ACTGCGCGCGAGCAA              CGGCG GATACG CGCCG               CGAGGCCGGGGCACC  54 62
CXD78_RS15745 3273625 .. 3273646 -  -2.1  -3.07291   AAGTAGTCGATTGAA           CGGATTCGC ACCG ACGCAACCG            GTGTGTAGCGCTCAG  41 161
CXD78_RS15740 3268432 .. 3268460 -   -11  -3.31779   AAGAACGCAAAGAGA       CGGCGCCGCCGCGC GAG GCA-GGCGG-GCCG       TGATTCACGGCGCTT  66 40
CXD78_RS15735 NONE
CXD78_RS15730 NONE
CXD78_RS15725 3263488 .. 3263512 -  -2.7  -3.59979   GCCGGTTATGCGAAA          TCTGCATAACG CGG CGATTTGCAGG          GTTACTCCTTAGGCG  49 27
CXD78_RS15720 NONE
CXD78_RS15715 3261416 .. 3261432 -  -6.5  -3.54424   CGCCATCCGGGGAAA              GGGCG AACAGCA CGCCC              CAGTTCCATTGATAT  56 129
CXD78_RS15705 NONE
CXD78_RS15700 3259223 .. 3259239 -  -7.9    -3.273   GTAGAAAAGGGAAGA              CATGCGG CTA CCGCCTG              AGTATTGGATAACGG  56 41
CXD78_RS15695 3257880 .. 3257893 -  -2.3  -3.44848   GGGCTTCACCAAACA               GGACG TCCA CGTCT                TCTACGTCAACAGCG  47 497
CXD78_RS15670 3253243 .. 3253262 -   -15  -3.14564   CCATGGCGGGAGCAA            CAGGCGGC CGGC GCCGCCTG             GGGCTTGCTCGCCGG  76 151
CXD78_RS15665 3251874 .. 3251892 - -10.2  -3.04461   GACCCAGGCCGAACA             CGCCGCGA TCC TCGCCGCG             CTGCGCGCCGGCGAC  59 182
        pepN 3236171 .. 3236183 -  -3.3  -2.74192   TACGTTTCAAGAGTA                GCTCC TAA GCAGC                CAGATCCAAGGCTTT  40 17
CXD78_RS15595 3234946 .. 3234980 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS15570 NONE
        serB 3228423 .. 3228445 -  -6.1  -3.16039   AAGCAGCCGGAGTAA           GGCGCGCGG GCCGG CCGGGCGGC           GGGAGGCCGTCGCGA  51 131
CXD78_RS15555 NONE
CXD78_RS15550 NONE
CXD78_RS15545 3223264 .. 3223280 -    -3  -4.11484   GGCAAGTGCTGAAAA             CAG-ACC GGCT GGTGCTG              GAGCCGCAATCGATG  61 509
CXD78_RS15445 NONE
CXD78_RS15440 NONE
CXD78_RS15435 NONE
CXD78_RS15430 NONE
CXD78_RS15425 3199049 .. 3199065 -  -2.1  -3.05384   GTGGCCGTCACCGAA              TGGGCGC TGC GCGTCAA              CGCGCGAGCATGAGC  41 22
CXD78_RS15390 3191759 .. 3191792 -  -6.9  -3.09516   CTTTTCATGACGCAA     CCTAATTATCAAAGA ATAT TCTTGGATAATTAGT      CAAAGCGAGATTACC  52 108
CXD78_RS15385 NONE
        mexI NONE
CXD78_RS15375 NONE
CXD78_RS15370 3185119 .. 3185129 -  -3.2  -3.28712   CGCGGGCCTGGACAA                 CCAG TAC CTGA                 AGGCCGGCGATACGC  47 239
CXD78_RS15355 NONE
CXD78_RS15350 NONE
CXD78_RS15345 NONE
CXD78_RS15340 3177137 .. 3177188 - -12.9  -2.53876   GCCTACCTGAAGGGA GGCACCGCGGCGC-TGGGCGCGGA CCGGC TGCGCGGCGACGCGCCGCAGTTCC TGACCGAGGCGATCG  62 232
        lrhA NONE
CXD78_RS15310 3169641 .. 3169659 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACTGGTG 100 303
CXD78_RS15275 3160630 .. 3160667 -   -12  -3.05816   GGAGCGCTCATGGAA   GCAGCGCCTCGAACAGC TGCAC GC-GTTCGCGTCGCTGC   GGCAGGCTACCCAGT  66 470
CXD78_RS15245 3155145 .. 3155155 -  -4.6  -4.07568   CGGGCCTGGGGAAAA                 CAGC GGT GCCG                 TTTGATGGTGCACCC  62 31
CXD78_RS15240 3154042 .. 3154081 -  -2.8  -3.90291   AGCTGGTCAACGAAA  GCGATATCGAGCATG-CCA TCG TGGTCCTGCTGGAAATCGA  GAAGACCGTGGTCGA  56 434
CXD78_RS15230 3151948 .. 3151958 -  -4.6  -3.36327   CCAGCGCATCTACAA                 CGCG GCG CGCA                 ATGTCGAGGCGGCCG  49 255
CXD78_RS15205 3147502 .. 3147516 -  -2.1  -2.50816   TGGTCATCTACGAAT              GGATCC TGCA GGA-CC               TCGGCCGCTGGGGCT  37 520
CXD78_RS15175 3141142 .. 3141153 -  -7.2  -2.52623   GCTGGCCGAGAACAT                CGCC TACG GGCG                 GCCCGGGGCCACGCA  48 497
CXD78_RS15165 3138721 .. 3138737 - -11.5  -2.77013   GATGTCGGTAACAAG              GCGCAGC ATC GCCGCGC              TCAGCCCAGGCGTTC  62 26
CXD78_RS15160 NONE
CXD78_RS15155 3138211 .. 3138230 -  -4.2  -4.00042   GTGCGCAGCAAATAA            GGCCGCGCG GTT CA-ACGGCC            GGTATCGGGGTAGTC  59 17
CXD78_RS15145 3136178 .. 3136192 -  -7.1  -2.70932   GCCGGCGCTGAACTA               CCGCT TCGAC AGCGG               CAGCACGCTGACCTT  49 365
CXD78_RS15130 3133269 .. 3133297 - -16.9  -5.53288   CCGAAGCGAAAAAAA        TCCCATGCAAATC AGT GATCTGCATGGGA        TTTCCGGTCTGGCCG 100 59
CXD78_RS15125 3130101 .. 3130159 - -29.8  -3.25072   GGGAGGAGAACGGAA TG-GGCGCGGCCATCCGGCCGCCCGCGGC TTGC GCCGCGG-CGGCCGGATGGCCG-GCTTCA GGACAGGGGATGAAA 100 49
CXD78_RS15120 NONE
        accB NONE
CXD78_RS15110 3126596 .. 3126616 -  -3.9  -2.93853   CCGTGGCAACGAAAC            CGGGACC GGTTCAG GGTCGCG            TGAACGAAATGTGTT  43 15
CXD78_RS15105 NONE
CXD78_RS15100 NONE
CXD78_RS15095 NONE
CXD78_RS15090 NONE
        accC NONE
CXD78_RS15075 NONE
CXD78_RS15070 3119523 .. 3119541 -  -6.7  -4.11216   CCGTTACTTGCAAAA            CGCG-TGC GGCT GCAACGCG             CGACGTCGGCGGGTG  67 137
CXD78_RS15065 3119186 .. 3119201 -  -3.2  -3.10775   ACGCGCATGCAAAAG              GCGC TCCAGGTG GCGC               AACCGCGACGATAAC  44 105
CXD78_RS15060 3117963 .. 3117975 -  -6.3  -2.88544   GTCCACTCCTACACA                TTTGG TAG CCAAA                TTGTAAAGGATTTCG  48 93
CXD78_RS15055 3117698 .. 3117719 - -17.3  -3.84451   CGGGCGAAATGCAAA           CGGGCAGCC TGCC GGCTGCCCG            TCGCGCGCCCCTCAA  95 37
CXD78_RS15050 3117228 .. 3117238 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 73
CXD78_RS15045 3116130 .. 3116166 - -15.7  -3.14132   CGGCCCGTGCAGGAA    CGGCCGCCTGACGGCCT TGC AGGTCGACGAGCGGCCG    GATGCCGGTGGCATG  77 82
CXD78_RS15030 NONE
CXD78_RS15025 3111980 .. 3111992 -  -9.1  -3.17075   CGGCGGCTAAGCGAA                TCCGG CCA CCGGA                TGCGGCGCATAGGCC  59 4
CXD78_RS15010 3109423 .. 3109456 -  -5.8  -3.62046   CGACTTCCTGAACAA     CATGCGCCCCAGCG ACGGCG CGCCCGCGCGCGTG      CAGCAGCCCGGGCAG  57 255
CXD78_RS14985 3102769 .. 3102779 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS14980 3101447 .. 3101498 -  -9.2  -3.21099   GCCGCTGATCAGGAA CGGCGACCTGCGCGCGCTGGCCG TCACGAG CCGCAAGCGCTCGCCGG-CGCTG CCCGACGTTCCGGCC  56 292
CXD78_RS14970 3099514 .. 3099545 - -11.6  -2.81133   GACGCACCCAGCAGA      GAGCCCCGAC-TGGA CAA TCCGTATCGGGGCTC      TCGTTTGCGTGGGTA  63 238
CXD78_RS14960 NONE
CXD78_RS14955 3097718 .. 3097743 - -18.3  -4.55798   GAGGGGAAATGAAAA         GCCCCGCGCAA CACC TCGCGCGGGGC          AAAATAGTTTGTTAA 100 291
        gyrA NONE
        serC NONE
        pheA 3088185 .. 3088236 -  -4.5  -4.84761   ATACCTGCAGAAAAA CAATATGGCAG-CGCCG-GACGGA CACACGC TCCGTCACGGCGGCCGCC-TGGTG TGCGTCAACCACGCC  82 47
CXD78_RS14900 NONE
        aroA 3085928 .. 3085941 -  -3.1   -3.6692   GCGGATGCGAAAATA               GCCATG GGG CA-GGC               GCCGTTCAGTCCCGC  53 31
CXD78_RS14890 3085249 .. 3085259 -  -6.8  -3.91984   ATACTGCCGAAACAA                 CACG CGC CGTG                 GCTAGGCGCACCAGA  66 27
CXD78_RS14885 NONE
CXD78_RS14880 3082926 .. 3082955 - -16.6  -5.00616   GCCGGCCCGAAAAAA       CAAAGCCCCTTG AACAAG CAAGGGGCTTTG        CCGGTAGAACACCAA 100 67
CXD78_RS14875 3082443 .. 3082457 -  -3.4  -3.56092   CCACCAGGGTTCAAA               GTCCAC AGC GCGGGC               TCTCGGTAGGAAGTA  49 59
        lapB NONE
       rfaE1 NONE
        rfaD 3079273 .. 3079297 -  -4.2  -3.40597   CGGTGCACGCAAACA         TCCACCCGGGC AATT ACCCGGG-GCA          AATCCGCTACTTCAG  49 32
CXD78_RS14855 3078640 .. 3078650 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS14850 3077570 .. 3077592 - -14.1  -3.78934   TGCCGCCGATAATAA           CCGCCCCGG ATCGG CCGAGGCGG           TTTAGCCGCGCTGGC  83 69
        cysM 3076259 .. 3076308 -   -17  -3.01712   CTTCCTGGTCGAACA TGGCTGGCAGCGCGGCCTGC-CG GTGTT CGCGCCGGTCGCGCTGCCGGCCG ATCCGGCGCCGCTGG  82 361
CXD78_RS14835 3074461 .. 3074476 -  -7.5  -3.08006   AAATAACAATAATTA              CCCGG CGAAAC CCGGG               ACCGCATTGCACAAT  54 53
CXD78_RS14830 NONE
CXD78_RS14825 3072708 .. 3072727 - -16.4  -5.75945   ATGGCCGAAAAAAAA            CCGCGGGC GACA GCCCGCGG             CTTTCTCTCTGCGTG 100 52
CXD78_RS14820 NONE
CXD78_RS14815 3069924 .. 3069939 - -11.8  -5.86332   CCAAGGCAAAAAAAA              CGCCCC TTGC GGGGCG               TTCTCGCCGAAGCGG 100 46
CXD78_RS14810 3068650 .. 3068666 - -11.5   -3.5944   ATCGAGATGCCGAAA              CCCGGCA ATA CGCCGGG              GCGCTGGCGCCGCGC  72 95
        cysA 3065563 .. 3065596 -  -5.1  -2.71712   GTCGGGCCGGTAAAC     CGTGATGG-CGCGCCC GTA GCGCGTGGCCACCGCG     TCCAGCACGCCGAGG  45 264
        cysD 3063813 .. 3063824 -  -3.6  -3.90048   GGGTGTCGAAAAATA                GCGG TAGG CCAC                 ATCGATGGTGATGCC  59 330
CXD78_RS14775 3061292 .. 3061312 -  -4.5   -3.6215   CGAATGCATGTCAAA            CCACTGCCG CGA CGGGCGCGG            CCCCCTACCACTGGC  52 80
CXD78_RS14770 3060757 .. 3060772 -  -4.6  -4.62069   CTGCTACGGGAAAAA              GTAGGC ATAG GCCGAC               TGGCTGGCTGCCTGG  75 86
CXD78_RS14760 3059160 .. 3059211 - -22.6  -2.87132   GCTTTCTTCCAGATA TCTTTTCGCAATAAAAGGACACCC TTGC GGGTGCCCTTTTATTGCGGAAAGC CGTGCCAGACACAAA 100 81
CXD78_RS14755 3058279 .. 3058296 - -14.1  -5.14563   GCCGGGATGAAAAAA             GGCGCGC CACG GCGCGCC              GTACTGATCGGGAAT 100 60
CXD78_RS14745 3055894 .. 3055912 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACTGGTG 100 244
CXD78_RS14725 3052029 .. 3052061 -  -3.4  -3.80733   GGCAGGCCAGAATAA      CCCGGCGTTT TTAAATTTGCGTT AATCGCCGGG      CCGGCGGCGGCCGCT  56 69
CXD78_RS14710 NONE
CXD78_RS14705 3045719 .. 3045749 - -25.6  -3.55444   TCGCCACTGCGCAAA       CAGACAGGCCGGCA TCT TGCCGGCCTGTCTG       TTTTGGACGGCCGCG 100 46
        aceE NONE
        aceF NONE
        lpdA 3032569 .. 3032592 - -18.2  -2.52464   CGCCGCGCCAACGCA          CAAGGGCCCC GCGA GGGGCCCTTG           TGCTGCCATGCCGCG  85 45
         tkt NONE
         gap 3026056 .. 3026098 - -21.4  -4.07568   GCCTGCCTGCGAAAA GGGCCAGATCCGTTTCCCCG TGA CGGGAAAACCAACCTGGCCC TTGCGCCCTGTTCAG 100 51
         pgk 3024596 .. 3024611 -    -6  -3.01712   CCGGGCCGCTCAAGA              CCCGCG CCGC CTCGGG               CATCACCGGCTTCGA  48 227
CXD78_RS14585 NONE
CXD78_RS14580 3014657 .. 3014673 -  -2.1  -3.01712   CCGGGCGCGTCAATA              GGCTTGC TGC GCATGGC              ATGGGTAGCAAGAGA  41 68
CXD78_RS14575 3013261 .. 3013295 -  -6.3  -3.64487   CGACACGGCCAAGAA    GGTCGCGCGGCTGGAA GGCC TGCCGG-CGCGCGAGC     GCGCCGACTTGCAGC  59 456
CXD78_RS14565 3011370 .. 3011395 -  -3.9   -4.7416   TGAAAATCTGAAAAA         CGGCGCGC-CCA CTA TAGCGCACGCCC         TATTGCCGGGCGGCG  77 25
CXD78_RS14560 NONE
CXD78_RS14555 3009900 .. 3009910 -  -8.2  -3.02511   CCGACCGGCTGAACA                 GCGC CCG GCGC                 GCGTTCGGCCTCGGC  55 264
CXD78_RS14540 3007885 .. 3007909 -  -7.8  -3.93369   TGAACCTCAAGGAAA          TCGGCGCCGT GCTCA ACGTCACCGA          GGCGCGCGTGTGCCA  67 436
        flhD NONE
        flhC 3005851 .. 3005891 -  -4.6   -2.7386   AACCGACGCCAATGA TCCCCCCTGACCCGTCG GGCAAAAA CG-CGGGTTATGGGGGG  TTTTCTGGTGCTTTT  43 64
        motA NONE
        motB NONE
CXD78_RS14510 NONE
        cheA NONE
        cheW 3000945 .. 3000967 - -12.7  -3.90856   AAGCGTTGAACGAAA          CGACGGGCGG CGCA CCGCCCG-CG           GACTGACCGCCGTCA  82 38
CXD78_RS14495 2998849 .. 2998884 -  -7.5  -2.82516   CGGCGCAGCACCACA    CCGATACCGGCCCGCC GCGCT GGCGCGC-GAAATCGG    CCAGGATGGGAAAGT  52 341
CXD78_RS14485 2997251 .. 2997290 -  -2.1  -4.43909   ACTCCAAGAAAATAA TGTCCGGACGC-CCGCTCC GTTG GGACCGGGGCGTC-AAACG  CGATGCCCGCGGTCG  67 19
        cheY NONE
        cheZ 2996002 .. 2996020 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACAGGTG 100 206
CXD78_RS14450 2993018 .. 2993041 -  -6.6  -3.68351   TGCGCACCATGGAAA          CGGCGCGCCCC ATG GTGGC-CGCCA          CCAACACCGGCATCA  61 231
        dacB NONE
CXD78_RS14380 2977385 .. 2977399 - -11.4  -6.34424   GCGGCAAAAAAAAAA               CCGCCT GCA AGGCGG               TTTTCCTGTGGGCGG 100 59
CXD78_RS14375 2976005 .. 2976029 -  -3.4  -3.34398   GTCGTGCGCGAAACA         CGCG-CCGGTC CTGT GCCCGGTCCCG          CCCCGCAGGCCAGGG  46 77
CXD78_RS14370 2972970 .. 2972984 -  -2.7   -4.2679   CAAGCTCCAGGAAAA               CCTCC TCCGC GGGGG               ATAGACCCTCCTCGC  63 42
CXD78_RS14360 2970493 .. 2970536 -  -8.6  -2.66316   GCGTTCATCATACCA GCCGCGCCCCGCGCCACGCA CCCC CGCGTGCTACGGGGTGCTAC TTCAATTGCGTAATC  52 22
CXD78_RS14355 2970086 .. 2970138 -  -7.4  -3.66999   ACCGATCTACGCAAA CCCATTGTGCATGCCGGGGCGGAC GCGCG GCCCGCCCCGCCGTGATCAGCGGC GGCTGATCAGCAGGC  63 18
CXD78_RS14350 NONE
CXD78_RS14345 2969174 .. 2969195 -    -5   -3.7282   GGACGCCACCAACAA           GTGGCCGG GCGAAA CCAGCCGC            GAATGGGGCACGCCC  58 146
CXD78_RS14335 2966398 .. 2966418 -  -3.1   -4.4017   CCAAGGTCGAGAAAA            TGGCCGCCA GCC TGGCGATCT            GCGCGCCCACGCTGG  68 422
CXD78_RS14320 2964631 .. 2964647 -  -4.4  -3.27704   AGCTGCGAAAGTGAA             CGATGCG GCAG CGCA-CG              CCGGAAAGATGCTAC  49 89
CXD78_RS14315 2962034 .. 2962048 -  -3.4  -2.62184   CGGCCCGGTACACCA               TGCCGG TCT CCAGCG               AGGCCCACAGCCGCC  39 283
CXD78_RS14305 2960405 .. 2960439 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 221
         ppx 2951349 .. 2951383 - -21.4  -2.52464   GCTCCCCGGAAGTCA     GCGGGAGCCAGTCCCC TTC GGGGACAGGCTCCCGG     AGATCGGGTTTCAGG 100 36
CXD78_RS14235 2944521 .. 2944546 - -10.3  -3.53012   GCGGCCCGCCTGAAA         CCGGCGGGCCC GTCC AGGCCGGCCAG          ATCAAGTACTATCGC  67 34
CXD78_RS14230 2943045 .. 2943059 -  -5.6  -3.02144   CCAGGCCGCGCAACA               TGGGCC CCA GGCTCA               TGCCCTGCGCGTCGG  47 419
        dusA 2939467 .. 2939501 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS14185 NONE
CXD78_RS14180 2934963 .. 2934973 -  -3.2   -3.7614   AATCAGGACGAACAA                 CTGA CTT CCAG                 CCCAGCTGCCCAGTC  56 2
CXD78_RS14175 2933901 .. 2933932 -  -9.4  -3.03243   ACGGATCTTCGAAGA      GCATTAC-CGGCGGG CCG CCCACCGCGAAACGC      CCGGCAGCGGACTGG  55 174
CXD78_RS14165 NONE
CXD78_RS14160 2929084 .. 2929106 -  -5.5  -3.72324   CACCTCCAGGAAGAA          CAGGGCGTCC ATCA GGCCGCC-TG           CGCCGCCAGCCGGCG  57 14
CXD78_RS14155 2927984 .. 2928003 -  -6.4  -3.73775   CCCAGGCCCATGAAA            GCC-GCCTG CCC CAGGCTGAC            CAGCCCGGTATAGCC  59 239
CXD78_RS14145 NONE
CXD78_RS14140 2925382 .. 2925396 -  -3.5  -2.78384   GCGCGCGTCATGACA              GCCAGC GCTT GC-GGC               GCTTGTAGTGCTTGA  41 3
CXD78_RS14135 2923466 .. 2923487 -  -2.9  -3.12351   GCGCTGGATACGCAA           CGCCGGACCG CGC CGGTACG-CA           CCGCCACCTGCCTGC  44 50
CXD78_RS14130 2922285 .. 2922322 -  -7.6  -2.73364   GGTCGAGGCCAAGGA   CGCCGGCGACGAAGAA GCCATG TACTTCGACGCCGACT    ACATCCGCGCGCTCG  49 504
CXD78_RS14095 NONE
        lolD NONE
CXD78_RS14085 2913414 .. 2913445 -  -4.2  -3.78775   GCGGGCAGGAGGAAA      CAGGGGCCCGG-CGC CGG ACGGCCGGGCGTCAG      GGCGTCGCCGCCCTG  57 22
CXD78_RS14080 2909822 .. 2909846 - -12.8  -6.34424   GCGGCAAAAAAAAAA          CCGCCAGTCG ATACA CGACAGGCGG          CCAACAACGGGCGGA 100 109
CXD78_RS14075 2909305 .. 2909323 -  -3.8  -3.60762   GAGTGGCCAAAAAAG             GCGAAGTC GCT GACTTGAC             GAGGATTTCGCCTAC  51 187
CXD78_RS14070 2905229 .. 2905257 -  -9.4  -2.87132   CCTGCTCGCCAGACA        GTGGGAGGCGCC CCATC GGCGCCCCCCGT        CTTACGGCGCTTAGT  56 36
CXD78_RS14060 NONE
CXD78_RS14055 2900562 .. 2900576 -  -2.7  -3.02263   AGAGGTCCTGCAAGA               CCTCG GGTAG CGCGG               CTTCGCCGCGCTCCG  42 53
CXD78_RS14050 2899648 .. 2899671 -    -8  -3.09015   TGCATAGGGATTCAA          GGGCAGCCGG GGCG CCAACGGCCC           GGCGCGAAAGGCGCG  54 43
        greB 2898817 .. 2898851 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 241
CXD78_RS14015 2891418 .. 2891436 -  -5.2  -4.42081   AACATAAAGGGAAAA             CCCGCAAT TTT ACTGCGGC             CCGCTTCCCTGCCTG  72 16
CXD78_RS14005 NONE
        odhB 2884797 .. 2884853 - -12.9  -3.74693   CCGGATTCGACGAAA CCGGCAGGGCCGCC--GGGC-GGGCCGC GATG GCGGCCCGGCCCTTGGCGGCAGCGACAG AAGAAGGCATTCTTC  79 58
        lpdA NONE
        zapE 2881935 .. 2881951 -  -3.5  -3.14132   GGCCTGCCGGAGGAA              GTCGCCG CCA CGGTGGC              CTTCCTGGCTTCCGA  45 114
CXD78_RS13980 2880079 .. 2880113 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS13945 2874538 .. 2874566 - -19.6  -2.53876   GCTGATCGCAACGCA       GGCGCCGC-CCCG TCAT CGGGTGCGGCGCC        TGCGTCGTTGCCCCG  93 67
CXD78_RS13935 2869875 .. 2869893 - -11.6  -3.91911   CGCAGTCCAAGGAAA             GCCCGGCC CCA GGCCGGGT             TTTCCTTTTGCGCGG  81 44
CXD78_RS13925 NONE
        pgeF NONE
        phaC 2865471 .. 2865490 -  -4.8  -3.61894   AACGCCCGCCAAGAA            TGCCGGCC TTGC GGCCCGCG             CGCGTACTCAAACCG  52 33
        phbB 2864646 .. 2864674 -  -9.6  -3.04263   ATTTTACGTGTAATA       CCGGGCGTCCG CTTCCCCC CGGAC-CCCGG        CCCCCTCCGAATGCG  57 44
        phaR 2863969 .. 2863988 - -16.4  -4.24204   GACTCATACGGAAAA            GGGGCGCC CGTG GGCGCCCC             TTTTCCTTCAGCCAG 100 52
CXD78_RS13900 NONE
CXD78_RS13895 NONE
CXD78_RS13890 NONE
CXD78_RS13885 2860660 .. 2860674 -    -7  -2.79183   GGGACCGCCACCATA               CCGCGC CGC GCGTGG               CCGCGCTACCAGATG  48 31
CXD78_RS13880 2859676 .. 2859686 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS13875 2858560 .. 2858582 - -11.9  -2.50816   GCGGCAGCGACGAAG           GCGCGCCGG GACCG CGGGCGCGC           TATGGGCCGGGCTAC  58 115
CXD78_RS13850 NONE
CXD78_RS13845 2853241 .. 2853259 -    -3  -3.58396   CGTGAAATTAAAAAT             CCCACTCG TGC CCAGTGCG             TATGGCAATGCCTGC  49 56
CXD78_RS13840 2851557 .. 2851573 -  -6.5  -3.39895   CGGTGTAGCAATGAA              CCGGC TTTGTGG GCCGG              CATGTTGGTTCCGCG  55 167
CXD78_RS13835 NONE
CXD78_RS13830 NONE
CXD78_RS13820 2846890 .. 2846902 -  -3.3  -3.35679   GCTGCCCATCGACAA                CCCCA ATC TGGTG                GTCGAGCCGTTCGCC  47 465
CXD78_RS13810 NONE
CXD78_RS13805 NONE
CXD78_RS13800 2843741 .. 2843776 -    -9  -3.14132   GCGCTGGCCGACGAA   CTG-GCTGGCCCGGCG TAGGCG CGCCGG-CCGGCTCAG    CGCTGGCCGTCGTGC  59 22
CXD78_RS13790 2841413 .. 2841430 -  -5.5  -3.34398   CGGCGCGGCCAAATA             GCCGC AACGGTCG GCGGC              TTACAGGCAGCGTCT  51 86
CXD78_RS13775 2838816 .. 2838855 -  -9.4   -3.5361   GAACCATGCATACAA  CCTATTGAATCTTCACAG CTAG CTGTGAACTGTCAATAGG   TTGTATTCGCCCAGG  64 4
CXD78_RS13770 2837749 .. 2837789 - -16.2  -2.71011   ATGCCTTGGCAACGA  GCCGGCGCGGCGCTAT GGTATGCGG ATAGCGCCGCGCTAGC  TGTGAACTGTCAATA  77 21
CXD78_RS13725 2829860 .. 2829906 -  -5.1  -2.97188   GGACAGGACGAGACA TGGCGCGCCACGCAGGCTCGA GGCCGGT CCG-GCCCGCGCATC-CGCCA GGGATGCGCGCGAGC  47 111
CXD78_RS13720 2828924 .. 2828970 -  -5.1  -3.29461   GAAGTCTTTGCATAA CCCTAGGATACGCCATGCGCCGC GGC GCTATGCCTG-CGCATCC-AGGG CGGCCGCGCCGATCC  51 6
CXD78_RS13715 2828632 .. 2828673 -  -4.3  -4.08216   CCAGGTCGGCGAAAA CCGGCTGACCATGATGTCGC AAG ACGGCACCCTGCCCAG-CGG CCCGTTGGCCGAGCA  60 73
CXD78_RS13705 NONE
CXD78_RS13700 2826587 .. 2826627 -  -6.6  -2.78596   TACCTCGTGACGATA CGGTG-CGCCGGGCGGCCG ATGG CGGCCGCCGGATGGCTGCG  CCTATGGTAGCCCGG  47 111
CXD78_RS13695 NONE
CXD78_RS13690 2825964 .. 2825987 -    -3  -4.07568   CGGCCGCGCGGAAAA          GAGCCAGC TTACCATC GCCGGCGC           GGCGCAGAAGGTCAG  59 37
CXD78_RS13685 NONE
CXD78_RS13680 2824713 .. 2824742 -  -7.7  -3.21395   AGCTGCTGGACAAGA       GCTGCGGCGCCGAG GCG CAAGGCGCCAC-GC       GGCTGGCGCGGGGGC  53 277
        clpB 2820079 .. 2820102 - -13.2  -5.48063   AGCGAACAGAAAAAA          CCCCTGG-TCC ATT GGATCCAGGGG          TTGAGAGACGCGGCG 100 69
CXD78_RS13655 2818312 .. 2818341 -  -4.9  -3.05384   TCCGGCGCCAGCCAA       CTGCCGAGGTCCTG CTG CAGGATCCC-GCTG       ATCACGCGATCGCCG  45 123
CXD78_RS13645 2814229 .. 2814262 -   -11  -2.68942   AGCGCCGGACAGAAC     CCCGATACGCCGCGC CTGGT GCGCGG-GCATCGCG     TCGACACCCTCAAGC  59 388
CXD78_RS13635 NONE
CXD78_RS13630 NONE
CXD78_RS13625 2811053 .. 2811085 -  -9.7  -3.05463   ATGTGCGGCAGGCAA      CCCTGCCGGCGGG CTGCCGC CCCGCCGGCCGCA      ACAGCCGCGCCTGAC  57 47
CXD78_RS13615 2808580 .. 2808601 -  -8.6  -5.47218   GCGTAGGGAAAAAAA           GCAGGCGC GCTCAG GCGCCGGC            GCGCAGCACCTGGCC 100 14
CXD78_RS13610 2807216 .. 2807231 -  -7.5  -3.14132   GCGCGCCCTCATCAA              GGCGC GCCGCA GCGCC               GGCCACGGGCGCAAC  53 377
CXD78_RS13580 NONE
CXD78_RS13575 2801231 .. 2801242 -  -7.2  -4.15565   TTGAGTACCGTAAAA                CCGC CCAG GCGG                 GCCCACGAAACATGT  67 77
CXD78_RS13570 NONE
        crcB 2800229 .. 2800271 - -13.2   -3.6502   CACGCCGGACTGAAA CCTGGCGCCCGCCGCCGGGC TCA GCGCAACAGCAGGCGCACGG TCGCCAGCCCCAGCC  79 3
         alr 2795910 .. 2795933 -    -8  -2.56596   TTGCGTAGCAATTCA          TGCCAGCAGG CCGG CCCGCCGGCG           ATCCGCACAATGCTC  50 39
CXD78_RS13540 2794867 .. 2794889 -  -5.5  -4.45399   ACAGCAACAGGAAAA          TCTGGCGGCG TCAG CGC-GCCAGC           GTGACGATCCGGCCT  72 215
CXD78_RS13530 2793083 .. 2793129 - -12.9  -2.73875   CGCCGCCGAACACGA GCAGCCCGAGGCGCGGCTA TCCGAGTTC CAGCAGCGCCGCCGGCTGC AACTGGCCATCGAGC  63 213
        radA 2789442 .. 2789452 -  -4.6  -3.13299   CCAGCAGACTCAAGA                 CAGG CTC CCCG                 GACGTGCCATCAACG  47 35
CXD78_RS13510 2788552 .. 2788572 -  -6.7  -3.58905   AGCCCGCACATACAA            GGCGCGGCA AAA TGCCGCGTG            ACCTATAATTCGTTG  58 119
CXD78_RS13505 2787989 .. 2788010 -  -2.1  -3.53012   CGCTGGTGCTGCAAA           CCG-TGGCGC TGG GCGGCGTCGG           CCTGCTGGGAGGATG  47 295
CXD78_RS13470 NONE
CXD78_RS13465 NONE
        maiA 2780011 .. 2780032 - -17.3  -5.67063   GGCACCAGAAAAAAA           GGGCAGCCC ATCC GGGCTGCCC            TTTTTGCTTGGGCGC 100 45
CXD78_RS13450 2779606 .. 2779627 - -12.3  -5.09762   AGCGCAATACAAAAA           GCCGCTCAC TTGC GTGAACGGC            CCTTTTGTGTCGACG 100 77
CXD78_RS13440 2777602 .. 2777622 -  -6.7  -4.14392   CGGCAACCTGGAAAA            GACACTGGC CGC GCCCGTGAC            CGTGATCGTCGCCCA  69 417
CXD78_RS13430 2776263 .. 2776289 - -12.2  -3.85698   GGCCGCCCGGACAAA         CCGGTTTGGCGT CGC ACGCCAGGCCGG         CTGTAATGTCTTGAT  81 92
        scpB NONE
CXD78_RS13415 2772085 .. 2772104 -  -9.3     -6.13   ACACTCAAAAAAAAA            TGGGCTG CACGCC CAGCCCA             CCGTATTGCCTGGCC 100 453
        rimP NONE
        nusA NONE
CXD78_RS13400 NONE
        rbfA 2766575 .. 2766604 -    -5  -2.60341   AAGGAGAAAAAGCAG       CGACGA-CAGCCC GGTCA GGACTGGTCTTCG       GGCTCGTCGGGAACA  42 10
        truB NONE
        typA 2763906 .. 2763932 - -22.4  -4.65895   GGCTGCATGTAAAAA         GGGTTGTGGCCG CCA CGGCCACAACCC         TTGCGCTGGCACCGC 100 66
        polA 2759196 .. 2759221 - -17.5  -2.69151   GGCTGTCAGACAGTA         TCCGGCCGGCG CGGA CGCCGGCCGGG          GCCGCATCAGTGCGC  80 32
CXD78_RS13360 NONE
CXD78_RS13355 2757405 .. 2757430 - -21.9  -2.52676   GACGCGGGCAACTGA         GGGCCTGCCCG AGCA CGGGCAGGCCC          CGGCCCGCTACAGGT 100 33
CXD78_RS13345 2754041 .. 2754092 -  -7.2   -4.8048   GGGGTAGAGGAAAAA CTCTAACCC-CGGGTGCCTGTCCCC GCA GGGGACTGGCACCCGCAAACTCCAA CCCCGGCGTGCCTGT  84 117
CXD78_RS13315 NONE
CXD78_RS13310 NONE
        parC 2739870 .. 2739885 -  -8.2  -3.22475   TTCACGCTCAGAACA              CCGGCG ACAG CACCGG               CTGCCTGGGACGCAC  58 2
CXD78_RS13300 2738445 .. 2738479 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS13275 2734795 .. 2734823 -  -8.7  -3.29144   CTACGTGCTGGAGAA        CGGCCGGGTGGTG CTG CACGACACGGGCG        CCAACCTGCTGGTCA  59 157
        ugpB 2725620 .. 2725650 - -21.1  -3.18118   CCAGGTGAGAATACA       GGCGGCCGGCCGG TAATG CCGGCCGGCCGCT       ACAGGCACAGGCCAA 100 145
        ugpA NONE
        ugpE NONE
CXD78_RS13210 2722590 .. 2722623 - -17.3  -3.44325   ACGTCGTACAAGTAA     GGCGCATGCGCGCGG CTCG CCGCGCACGGGCGCC      TGTCCCCGCTGCGGC  87 102
CXD78_RS13200 2720571 .. 2720581 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS13195 2719361 .. 2719401 -  -3.1  -3.06261   TCGCAACCGCGAACA CGCG-CGC-CGCCTCGCCG CTGGT CGGCATCGCCTGCGTCGCG GTGGGCATCTTCTGT  42 191
CXD78_RS13180 NONE
CXD78_RS13175 2717690 .. 2717748 -  -2.9  -4.56597   GCCTTGCGCCAAAAA TCCCATTGTGCCGCAC-GGGCCGCGCGGC CGG GCCG-GTAGCCCTGCGCCCGGCAAGGGGA TCAGGCTGCCGCGGG  69 76
CXD78_RS13170 2716776 .. 2716808 -  -9.7  -3.06671   AGATCGACCGCAACA      TGGCCATGCTGGGCG TGA CGCGCTGCACCGCCA      TGGCGCCCGGGCTGC  59 67
CXD78_RS13110 2707039 .. 2707067 - -10.1   -2.9348   TGTAAATTTTACATA        GGGTGTGGCGCGG TCG CCGCGCCCTAGCC        GCCGTGCTGCGCGTC  59 20
CXD78_RS13105 NONE
        arsC 2704948 .. 2704979 - -24.5  -3.90112   CGGCCGTCAACGAAA      GCGGCCTGGCGCG TCTTGC CGCGCCAGGCCGC       AATCACTCGCCCTCA 100 70
CXD78_RS13065 2699707 .. 2699738 -   -10  -2.81547   CCTGCAGATCAACTA      TGCGCTGGACGACC GCCA GGCCGCGCAGCGCC       TGTTGCCGCTGGCCC  56 306
CXD78_RS13035 NONE
CXD78_RS13030 2694128 .. 2694171 -  -8.3  -2.51133   GAGTCATCCACGAAC GCGATCGAGGTGAGCAGCTCCA CGC TGGA-CTGCG--CCTCGACCGC CTGCATCACGTGCAG  51 258
CXD78_RS12985 2674171 .. 2674228 -  -7.7  -3.07113   GATCAGTCCAGCCAA CGCAACCGGGGCCAGGGCGC-GCGCCGCT CGTG AGCCCCGCGGCGCCC-G-CCGCG-CTGCG CTATGTGGACGACAG  53 66
CXD78_RS12960 2669814 .. 2669837 -  -8.8  -3.53012   GCCCGGCGCCGCAAA          GC-GATGGCGC AGG GCGCCAGCTGC          GGCGGCTGTTCGCCG  61 350
CXD78_RS12935 2666740 .. 2666772 - -12.7  -2.73875   CCTCGGCGAACACCA     GGCC-GTCCGGCCC CAGTTC GGGCAGGACCGGCC      GCGCCGCGCCAGGCG  65 244
CXD78_RS12925 2663143 .. 2663175 - -10.5  -3.05963   ACGTGCAGGTCAATA     CCCTGCGCGCCGCC CTGCCC GACGGCGCGC-GCG      TGGGCACGGTCGACA  59 285
CXD78_RS12910 NONE
CXD78_RS12905 2657209 .. 2657224 -  -4.6  -3.41051   CTACTTCGACGAGAA              CCGGCG CTTC CACCAG               GCCATTGCCGATCTC  52 291
CXD78_RS12895 NONE
CXD78_RS12890 NONE
CXD78_RS12885 2652724 .. 2652736 -  -3.3  -2.64243   GGATATGCGACAGCA                GCTTC ATG GACGC                GGCTCCTGCGGGGCT  39 16
CXD78_RS12880 NONE
CXD78_RS12875 2650152 .. 2650176 - -13.5  -3.21416   CAGCGCCATGAGCAA          GGCCGGGCTGG ACG CCAGCCTGACC          GCCGTCGGCCCGCCG  72 427
CXD78_RS12855 NONE
CXD78_RS12850 NONE
CXD78_RS12845 2644169 .. 2644205 -  -9.4  -3.02511   GGTAGCCGGCCAAGA   CGGACGGTATCTGTCCC CGCA GGGACAGCCAGCG-CCG    GCGACGGGCTACTTC  57 34
        flhB 2637871 .. 2637910 -  -3.5  -3.67296   CAGCACCGAGGGAAA  CGCGGCGAAATCCA-GCG GCTTG CGCGTGAACATCGCCACC  AGCAGGATCATCACC  54 199
        flgB NONE
        flgC NONE
        flgD NONE
CXD78_RS12770 NONE
CXD78_RS12765 2627851 .. 2627881 -  -2.2  -4.32034   GCATCATGATGAAAA       CTCCTGGCGCGGCG CTT CGGCGCGCGCGTTG       ATAATCAGCTGGCCG  65 30
        flgG NONE
CXD78_RS12755 NONE
        flgI NONE
        flgJ NONE
        flgK NONE
        flgL 2620853 .. 2620878 -   -14  -3.05384   CCGCTTTCCATCGAA         CACGCGCTCC TCGAGG GGAGCGCGCG          CCATTTCCCGACTAC  72 57
CXD78_RS12730 2618976 .. 2618987 -  -2.2  -3.68853   GCAAAAACCGCCAAA                CAGA ACTA TCCG                 GCCGCCATTTCGCCC  51 49
CXD78_RS12725 2617169 .. 2617204 - -22.6  -4.56597   CGCTGCCTGTAAAAA    GACGATCCGGCGCGGC GCTG GCCGCGGCGGATCGCC     GCTTTCCCGTCCTGG 100 92
CXD78_RS12720 2615613 .. 2615628 -  -4.6  -3.78419   GGAGGAAAGATACAA              GGCACC CAGC GGCACC               CGACGGCACCCGACG  58 47
CXD78_RS12715 2614371 .. 2614397 -  -2.9  -3.90744   CTGGCGGGCAAATAA        CCCCTTCGGG TGCCTGTC CCCGC-GGGG         ACAGATACCGTCTTG  58 45
        fliE 2601024 .. 2601045 -  -7.2  -2.88544   CTGGATGCCCATATA           CCGCCGCA ACTCTA CACGGCGG            TGGCCGAGCTGCTGG  50 518
CXD78_RS12590 NONE
CXD78_RS12585 2594333 .. 2594349 -  -3.5  -3.31415   GACGACGAAATCGAA              GCCGGTC ACT GTGCGGC              GATGAAACCGTTGTC  47 14
CXD78_RS12580 NONE
CXD78_RS12575 NONE
        rpsB NONE
CXD78_RS12545 2584932 .. 2584966 - -13.5  -3.83144   GTAAGACAAGAAATA    GGCCGGC-AGTTCGGG AAGC CCCGCCCTGGCCGGCC     CCTACGATGACGCGT  83 40
CXD78_RS12540 NONE
CXD78_RS12535 2583540 .. 2583591 - -10.8  -3.10344   CGCGTACGGAACAGA TTCCGATATCGACACCGGAGCCGT CGAT ACGGCCCCGATACCTCAACCGGAA TTATACGGTCATGAT  64 26
        uppS NONE
CXD78_RS12525 NONE
CXD78_RS12520 2580574 .. 2580602 - -10.1  -3.59979   CGGGTGGACGCGAAA        GGCGGCCCGGCGC GTC ACGCCAGGCCGAG        ATTGCCGGCGAATGA  67 11
        rseP NONE
        bamA 2576752 .. 2576785 -  -2.9  -3.72893   TATTGTGCCACTAAA     CTGCGGGACGGCCGG GCAA CCGGCCATTTCCCAT      GTTTTCATGCGTAAC  53 65
CXD78_RS12505 2576122 .. 2576132 -  -2.4  -2.64218   AGGGTCCAGCAGAAC                 CGGC ATG GGCG                 TGCTTATCGGCCCAG  38 29
        lpxD NONE
        fabZ NONE
CXD78_RS12490 NONE
CXD78_RS12485 NONE
CXD78_RS12480 NONE
CXD78_RS12475 NONE
CXD78_RS12465 2567769 .. 2567789 -   -14  -5.40072   GCCCGGCGAAAAAAA            GCCTCGCC GCAAG GGCGAGGC            TTTTTCCTGCTGCCG 100 46
CXD78_RS12455 2566444 .. 2566463 - -10.6  -3.09015   TTCACAGCTAGTGAA            GCCTGCCG TCGC CGGCGGGC             AAGGTCATGGTTACG  64 36
CXD78_RS12445 2564411 .. 2564434 - -17.4  -3.59979   GGCGCGGACGCGAAA          GGACGCGCCG CGGC CGGCGCGCCC           GGGTCGAACCTCACG  89 36
CXD78_RS12440 2563197 .. 2563217 -  -9.7  -3.67622   CAGCGCGAAAAGGAA            CGTGTCCTG AAG CACGACACG            CGCGTCAACCAGCGC  68 30
CXD78_RS12430 NONE
CXD78_RS12425 NONE
CXD78_RS12420 2560768 .. 2560781 -  -2.4  -2.62616   GGACGCTCGACATGA               CGTT AACGTA AACG                TAAGTCGTTGGCGAG  38 129
CXD78_RS12415 NONE
CXD78_RS12410 NONE
        mmsB 2557383 .. 2557399 -  -4.3  -3.08464   GTATCAGGCATGCAA              GCCTCTC GCG GAATGGC              CCTGGCCGCCCGGCC  47 50
CXD78_RS12400 2556927 .. 2556954 -  -6.8  -2.90075   GGCGCGCCAAGTATA        GGCCGCCGCGCC GTTC AACGCGGCGTCA         CCCGCACCGCGGTCA  50 12
CXD78_RS12395 2555979 .. 2556013 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 204
CXD78_RS12370 NONE
CXD78_RS12365 2548439 .. 2548466 - -14.2  -6.15828   GGCACCAAAAAAAAA        CCCATCC-CGGCA TGG CGCCGTGGATGGG        GCGGACGTTCGAGGC 100 47
CXD78_RS12335 2541818 .. 2541828 -  -4.6  -3.07113   CACCAGGTCATCCAA                 GCCC ACT GAGC                 CCCCTATTCGCGAGT  45 156
CXD78_RS12330 2541507 .. 2541517 -  -2.6  -3.57144   CGCGCCACCTGGAAA                 TAAT CGG ATTA                 CATCTGCAAGCGCTG  48 23
CXD78_RS12325 2540426 .. 2540445 -   -10  -4.07568   GGCTTCGCGCGAAAA            CGGGGTTA CGGT CAACCCCG             ATTATGACACTGCCG  78 27
CXD78_RS12320 NONE
CXD78_RS12315 2538427 .. 2538475 -  -8.6  -2.62184   GGCCGCTGGACACCA CGATCGCGCGC-CTGGCCGCGCC CGTC AGCCCGGCCTGAACGCGCGGCCT ATTTGGCGGCCTGGC  52 24
        apbC NONE
CXD78_RS12290 NONE
CXD78_RS12285 NONE
CXD78_RS12280 NONE
CXD78_RS12275 2530712 .. 2530729 -  -8.4  -3.29829   TATAGCTTCCGACAA             CCGCAC GCCATG GTGCGG              TGCCCGCATGCAGCA  58 88
CXD78_RS12270 2530416 .. 2530430 -  -5.6  -3.13403   TCTTGGTCAGCAACA               TGCCGG GCT CCGGTA               TCAAACGAGGGTGGT  49 26
CXD78_RS12265 2526928 .. 2526950 -  -3.2  -3.01712   CGCGGGTGCGGAAGA           TGTCGGCCAC CAC GTCGCCGTCG           CCGGCCAGCAGCGCC  42 522
CXD78_RS12255 NONE
CXD78_RS12250 NONE
CXD78_RS12245 2524954 .. 2525004 - -10.2  -3.61398   TTTCGCGCGCAAGAA GGTCCGGCGCAC-GCGCCCGGCC TGAGGC GGCCGGACGCCGCGCGGCTTGCC GCCCGGGCTACTGGC  67 33
CXD78_RS12230 NONE
CXD78_RS12225 2521328 .. 2521348 - -16.9  -4.07687   ACGCCCCGTGCAAAA            GGCCACGAG TGT CTCGTGGCC            TTTGGATTTCGTGCT 100 121
        leuC NONE
        leuD 2519043 .. 2519079 - -18.6  -3.37556   GGGAAAACAAGGCAA    GGGCCCGCCGCGCGCG ATCAA CGCGGACGGCGGGCCG    GCAGGCAACGCGTCA  93 38
        leuB 2517870 .. 2517886 - -10.1  -4.58685   AAATTGTGCGAAAAA              GCCGCAA AAA TCGCGGC              CCTTGCGCACAGTGG  93 73
         asd 2516550 .. 2516606 - -11.8  -4.07568   CCTTGCCGTCGAAAA CGGCGCGCCT-GC-G-A--CAAGGGCGCC CGCG GGCGCCCTTGTATCCTGCCATGCGCGCCG GCGCCGCGCGTCAGG  82 36
CXD78_RS12200 NONE
        truA 2513930 .. 2513942 -  -4.7  -3.61398   CTGGGTGTGGAAGAA                TGCGC TGA GCGCG                GACCGTTTGCGTAAA  52 130
CXD78_RS12190 2512803 .. 2512819 -  -6.5  -3.53012   CGCGTCGCGTCGAAA              CGGGG TTATTTG CCCCG              CGCCACCGTCGCCAT  56 14
CXD78_RS12185 NONE
CXD78_RS12180 NONE
CXD78_RS12175 NONE
CXD78_RS12170 2509458 .. 2509478 - -15.5   -5.1101   CGATCAGGCAAAAAA            CGCCAAGTC AGC GACTTGGCG            TTTTCCGTTTCGATA 100 62
CXD78_RS12165 NONE
        yaaA 2507358 .. 2507395 -  -3.4  -4.21812   GCCGAGCGAAAAGAA  CAGGAAGACGCGTAAGCC TGCC GACAT-CGCG-CGTCCTG   TCAGGCCTGCTTGCG  63 26
CXD78_RS12155 2505660 .. 2505674 -    -7  -3.72576   CGGCGGGCGAGGAAA               CGCCCG AGA CCGGCG               AGCGCGCCGACGCCG  61 494
CXD78_RS12130 2501453 .. 2501480 -  -7.6  -3.88291   GATGACTCCTAGAAA        CGGGCCGCATTG TACG CGATCCGACCCG         AGTTGATCTCAATCC  66 34
CXD78_RS12125 NONE
        plsX 2500144 .. 2500160 -  -4.4  -3.14211   AGCTTTTTCCATCAA             GCGG-TG TCCC CAGCCGC              GCCGGGCGCGACGGC  47 5
CXD78_RS12115 2499107 .. 2499154 - -11.9  -2.50816   TCGGTATGGAGGAAT GGCGG-CGTGCGCGGT-CGCGCA CAGG CGCGCGCAGCGCGCCCTTCCGCC TACATGCGGGCCAGC  61 25
        fabD NONE
        fabG 2497342 .. 2497375 - -12.3  -4.03234   GCGTTTCCACAGAAA     CGCGCGGCTGGGC TTGGATGG GCCGCGCCGCGCG      CTTCTCACTATTGCA  83 33
CXD78_RS12100 2496894 .. 2496914 -  -4.5  -3.55563   ACGGCATTCCTGAAA            CCGCCCCGA TTC CCGGCGCCG            CCCCGAAGTGTTCGA  52 72
        fabF 2495524 .. 2495558 -  -6.5  -3.69216   CGGTTATCGAAAATA    CCGC-CGTCCGGGTTCA ACT CAAACCCG-ACGAACGG    CCATCGAACCGTTGG  59 9
CXD78_RS12090 NONE
        rpoE NONE
CXD78_RS12080 2493923 .. 2493936 -  -2.3  -3.54408   GCGCATGTAAAGCAA               CGGTG TCAT CAACG                TCCTGCTCCGGCGTC  48 20
CXD78_RS12075 NONE
CXD78_RS12070 2491287 .. 2491311 - -22.9  -4.65895   CGGGCGAGCCAAAAA          CGAGGGGGCGC CAT GCGCCCCCTCG          TTGCGGCAACCAGCC 100 62
CXD78_RS12065 NONE
        lepB 2488526 .. 2488539 -  -3.7  -3.17392   TAGCGGTCAATGGAA               GCGGC CAAT GCGGC                TCAAATCGCTGAAGT  45 3
CXD78_RS12055 NONE
CXD78_RS12050 NONE
        recO NONE
CXD78_RS12040 2485185 .. 2485211 - -15.9  -3.14344   GATGTCGCGGACGAA        CAG-GCCGCGCG GGCC CGCGCGGCGCTG         GGCGCGCTGGGCATC  80 157
        lptF 2476508 .. 2476533 -  -6.1  -3.01791   ACGTGCTGCCCAACA         GCCAGGTGGTGC TGC GCAGCACC-AGC         GTCATCGCCCAGTAC  48 280
CXD78_RS11985 2474402 .. 2474415 -  -2.3  -3.14132   CTTGCCGCCGATCAA               TAGCG ACTT CGCTC                ATTTCTCTGCTCCTC  42 124
        mmsA 2472839 .. 2472862 -  -8.2  -3.15544   CTGCAGGTTCATGAA          TTGGCCCCTGT TAG AC-GGAGCCAA          TTATAAGTAATATAG  56 98
CXD78_RS11975 2471682 .. 2471716 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS11965 2470216 .. 2470233 - -14.1  -4.41895   AAGGCCCAAGCAAAA             GCGCCCC GTCC GGGGCGC              TTTTGCTTGGGCCTC 100 77
CXD78_RS11950 2466678 .. 2466724 - -21.5  -2.62184   TGCTGGTGTAGAGCA GCCGGCGCTTGCCGGCGCGCGC ATCG GCGCGCG-CGCCCAGCGTCGGC ATGGTCAGCATGATG 100 294
         acs 2463361 .. 2463391 - -14.7  -4.17089   TGCAAAGCCGGAAAA      GGCACGGGCCGGTC ATGC GACCGGCCCG-GCT       GGCTACAGACTGACG  95 101
CXD78_RS11935 NONE
CXD78_RS11930 2461380 .. 2461405 -   -14  -3.28712   GCGGGCGGCTGAGAA         CGC-GCCGCGC TCAGC GCGCGGCCGCG         CAATGCCCGCGTACC  75 10
CXD78_RS11905 2456232 .. 2456271 - -14.2  -3.62597   GGTACGCGTGAAGAA  GGCCGGAATGCCG-GCGCC GCC GGCGCGCAGCTTCTCGGCC  AGCGTGCCCTGCGGC  80 439
CXD78_RS11895 2455175 .. 2455192 - -14.1  -5.75945   ATGGGCGAAAAAAAA             CGCCGGC TAAC GCCGGCG              CCTTACATACAAAAA 100 51
CXD78_RS11890 NONE
CXD78_RS11885 NONE
CXD78_RS11880 2451162 .. 2451185 -  -2.3  -4.71426   GGTTGAGGAAGAAAA          TGCGGCAGGC GCCAA GCC-ACCGCG          TTCAATACGCGCCGC  74 27
        gsiB NONE
        gsiC NONE
        gsiD 2447614 .. 2447671 - -13.4  -3.48276   CGGCCCTGGAGATAA CAGGGC-CGCCGCGCGGGC-GGC-CCG ACCGGCG CGGCGCCTGCATGCGCCGCGCGCCCTG CCCTACTTGCGGTCT  75 28
CXD78_RS11860 2446514 .. 2446526 - -10.5  -3.38291   GGGAGAATGTCAGAA                GGCCG TCT CGGCC                AGCCACTGGCGCCAC  65 7
CXD78_RS11850 2443690 .. 2443700 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 194
CXD78_RS11845 NONE
CXD78_RS11840 NONE
CXD78_RS11835 NONE
CXD78_RS11830 NONE
CXD78_RS11825 2438462 .. 2438508 - -14.3  -3.09581   CAAACGCGGAAGACA GCGGT-TTCCGGCCGGGCCGCG ATGC CGCGGCCTGGCCGGATTACTGA CCATTAACGCAGGTT  73 29
        ftsB 2438034 .. 2438049 - -10.4  -5.86332   CCAAGGCAAAAAAAA              CTCCCC TGGC GGGGAG               TGTTGGCGCGTCCGG 100 50
CXD78_RS11810 2435481 .. 2435501 -  -4.5  -3.04792   TGATCAGGCGCAAGA            GCGGCGTCA TTG CGGCGCCGG            GGAGCGACTGAGCCA  45 11
CXD78_RS11805 NONE
CXD78_RS11800 2434236 .. 2434263 -  -6.2  -3.39784   CCAGGCCGAACAACA        CGCGCAGCGCCTG GCC CAGG-GCTGGCCG        GGCGGAGCCGGGCCG  55 294
CXD78_RS11720 NONE
        sdhC NONE
        sdhD NONE
CXD78_RS11705 NONE
CXD78_RS11700 2413165 .. 2413175 -  -6.8  -3.01906   CCAATAAACACTAGA                 CCGT ACG ACGG                 ACCATCAGTTCCTTG  51 10
CXD78_RS11695 NONE
CXD78_RS11690 2411501 .. 2411514 -  -9.5   -5.4505   GCCGGCAAGAAAAAA               CCGCC CGAA GGCGG                TTCTTTCAGTGGACG 100 54
CXD78_RS11660 NONE
CXD78_RS11655 NONE
CXD78_RS11650 NONE
CXD78_RS11645 NONE
        potA NONE
CXD78_RS11635 NONE
CXD78_RS11630 NONE
CXD78_RS11625 NONE
CXD78_RS11620 2397107 .. 2397125 -  -5.2  -4.36914   TGCTGGCCGAGAAAA             TCACCGAC GCG GCCGGCAA             CATGGCGCCGACGGT  69 331
        rmuC 2395172 .. 2395211 -  -5.5  -3.90744   TTGGCGGCGAAAGAA  TTGGGCGGACCGCCCGCC CCGCC GG-GGGCTCTCCGCCCCC  GCGCCTGCTCCTCAG  63 37
CXD78_RS11605 2393495 .. 2393509 -    -7  -2.96984   GAAATTTAGCAGATA               CCGGGC CAG GCGCGG               GCCAGAATCGGGGCC  51 1
        rpiA 2392642 .. 2392670 -  -5.2  -4.07885   TAGTGCCCCTGAAAA       CGCGGTTGCGCAG AGGG CTGCCCGACC-CG        CAAGGTTATGACCCG  64 106
        phoU 2391621 .. 2391676 -  -8.1  -3.05596   CAGGCGCGGATTGAA TCGGCCTA-TGGCGAGGCGCCCG-CGC TGCT GCGGCTGGCGCCGGGCGAGCAGGCCGC CTGGCCATATGAACC  52 166
        hrpA 2384054 .. 2384094 - -17.6  -3.57263   ACTGGCACCCGCAAA CTCTCGGGGTGCCTGTCCC CGCA GGGACAGGCA-CCCGTGGG  ACAGCCCCCTACCGC  90 34
CXD78_RS11565 NONE
CXD78_RS11560 NONE
CXD78_RS11555 NONE
CXD78_RS11550 NONE
CXD78_RS11545 2375382 .. 2375413 - -13.6  -3.04144   TGTTCATCTGGAACA      GTCCCGCCGCGCCG GCCC CGGCACGGCGCGAA       TACGACGCGCCCTAT  69 250
CXD78_RS11535 2372949 .. 2372966 -    -4  -3.76641   AGCGCAATACGCAAA             CGTCGC TTATCC GCGGCG              GCGCCTGTCTTCATA  57 14
CXD78_RS11530 2371385 .. 2371413 -  -2.3  -3.27743   CATCATCAAGGAATA       CGC-CGGCCTGT TCGTCT ACTGGCTGCGCG        GCTGGGTGTAACGGC  44 438
        msbA 2367656 .. 2367672 -  -6.5  -3.53012   TGGCCGCCGCCGAAA              CCATGGC GCC GCAATGG              GCGCAACAGGTGTTG  55 148
CXD78_RS11500 NONE
CXD78_RS11495 2364389 .. 2364402 -  -3.7  -4.74103   GGCCGAACTGAAAAA               GGCGC TCTC GCGCG                ACCGCACGCGCATGA  77 418
CXD78_RS11475 NONE
CXD78_RS11470 NONE
CXD78_RS11465 2359615 .. 2359653 -  -5.3  -4.07568   GCTGTCGGGCCAAAA   CCCAACGCTTAACACTG ACTCG CAGCACTAAGCGTTGCT   CTCTCGCCTTCTGGT  64 72
CXD78_RS11460 2356380 .. 2356390 -  -6.8  -3.65314   TTGAATTTGGAAGAA                 GCAC AGC GTGC                 GCCTGGCAGTCGGTT  61 127
         rrf 2356171 .. 2356205 - -19.5  -4.59773   GCGTACCCCCAAAAA    CAAAACCCCGCGAGCC GTGA GGCT-GCGGGGTTTTG     AGCAATAAAAGCCTG 100 36
CXD78_RS11450 2353017 .. 2353070 -  -6.6  -3.76224   TGCCCATCTACGAAA CCGCCGCCCTGCTGCGCAGCGC-CGGC ATC GCCGTACCCTGAGC-G-ACGCCGGCGG CGCGCGGTCACCAGC  62 33
CXD78_RS11410 2346135 .. 2346167 -  -4.6   -4.1899   CCAGTGTATGCAAAA      CGCGGCGGCCGTCA CAATC TGCCGCCTGCCGCT      CAGCGTCGCCGCGAC  66 25
CXD78_RS11405 2344647 .. 2344669 -    -9  -3.03441   CATCACCGCCGAACA           GGTGCGCGAC ATG GTCGCGCGCT           TTGCCCGCACCCTGG  55 107
CXD78_RS11395 2341848 .. 2341906 - -15.8   -3.6106   TGGAATATGTCGAAA GCGGCCGGCGCGAAGGCGCGCGGCTGC GCATGG GCGG-CGAGCGCGTGCGCGCCGACAGC GGCGGCTACTACATA  85 396
CXD78_RS11360 2334359 .. 2334388 - -18.5  -3.09492   TCGCCAACGGCAAGA       CGCGCGCCCAGGC CGAA GCCCGCGCGCGCG        AACTGCTGACCCTGG  85 432
CXD78_RS11335 2327624 .. 2327672 -    -8  -3.67296   CATTATCGATCCAAA CGGCGCGCGCGGCCAAGCGCGGGC CCA GCCGGCG-TCAGGCGC-CGCTCCA GGCCTCGGCGTTCAG  63 11
CXD78_RS11330 2326424 .. 2326462 -  -8.7  -3.03159   CCAAGTCCGCCAAGA  GCGCGGGCGGCGGCGCGGC CGA GGCG-GCGGCCGGC-GCGC  ACTGAGCGCCAGGCC  55 49
CXD78_RS11300 NONE
CXD78_RS11295 2318603 .. 2318622 - -16.4  -4.18018   GTCCGCCAGCGAAAA            CGCGCCCC GCAA GGGGCGCG             TTTTGCATGAGCCAA 100 54
CXD78_RS11280 2315319 .. 2315333 -    -7  -3.01924   GACGCTGGCCGAACA               GGGCGG CGC CGGCCC               GCACCTGATTACCGC  52 478
CXD78_RS11265 NONE
CXD78_RS11260 NONE
CXD78_RS11255 NONE
CXD78_RS11250 2309368 .. 2309399 -   -10  -4.07568   CTGCTTCCGGGAAAA      TGGGCGGGCCGCCGC CGT GCGG-AGCCCGCCGC      CGATGCGGGATTACT  78 36
CXD78_RS11240 2307714 .. 2307758 - -15.6  -3.17075   CGCCGGGCAAGGCAA GGCGGCC-GAGCTGCTGGCGC AGGC GCGCCAGCTGGCCTGGACGCC GCTGGTCGACGCCGA  77 197
CXD78_RS11225 2304553 .. 2304574 - -15.1  -3.01712   CGCGCTGGTCGAACA           GGCCGCGGC GGCG GCCACGGCC            ATGGAAGAACAGGCC  74 197
        greA 2301745 .. 2301765 -  -9.6  -3.07104   CGACAACGATACAGA            CGCCCGGC GCACG GCCCGGCG            TTCAGGAATTCGGAT  57 238
CXD78_RS11205 2299712 .. 2299749 -  -7.5  -3.16742   CTGAACGCTCACGAA   CGCGACCTGCGCAGCCGC CTG GAGGC-GCTCAGCGCGCG   CGGAGACGGCGCGGT  53 203
CXD78_RS11160 NONE
CXD78_RS11155 NONE
CXD78_RS11150 2292046 .. 2292059 -  -3.1  -3.17444   GGAGAAACAGACATA               TCGAA CCTC CTCGA                ATTGAAATCTTGACG  44 58
CXD78_RS11145 NONE
CXD78_RS11140 NONE
CXD78_RS11135 NONE
CXD78_RS11130 NONE
CXD78_RS11125 NONE
CXD78_RS11120 NONE
CXD78_RS11115 NONE
CXD78_RS11110 NONE
CXD78_RS11105 NONE
CXD78_RS11100 NONE
CXD78_RS11095 NONE
CXD78_RS11090 NONE
CXD78_RS11085 NONE
CXD78_RS11080 NONE
CXD78_RS11075 NONE
CXD78_RS11070 NONE
CXD78_RS11065 NONE
CXD78_RS11060 2277876 .. 2277898 - -14.2  -2.70932   GCGCTGCGCGAACGA           GGCTACGACA GCG TGCCGTAGCC           CCCCTGCCCGGGCCA  69 44
CXD78_RS11045 2275681 .. 2275695 -  -5.6  -3.59262   GCCGAGATCGCGAAA               CGGCCT TGC AGGCAG               GCGATGCAGCAGGTC  54 514
CXD78_RS11025 2268737 .. 2268753 -  -5.1  -2.78463   ACCTTGCGCAGCACA              TTGTGCG CGA CGCAGAA              CCTGCCTGCCGGCGC  43 398
CXD78_RS11010 2266812 .. 2266862 -  -5.5   -3.7108   AGCTGGACACCGAAA TCTACG-ATCG-TGAGCTGGCCG GCTGGAT CGGGCAGCGCATCGACGCGCAGA TCCGCCACGCGCGGC  58 123
CXD78_RS11000 2265228 .. 2265250 -  -4.1   -5.4505   CCGCCCAAGAAAAAA          GCACCC-GGC TTGC GCCTAAGTGC           CTGTTTTCAAACGAA  90 47
CXD78_RS10990 2262060 .. 2262100 -   -11  -3.53012   GGGTCCCGGGCCAAA  GCGCGCAGATCCCGGCCG TTACC CGGCAAAAGCCTGCGCGC  AGGCCGCGCGCCCGT  70 65
CXD78_RS10985 2261409 .. 2261443 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS10955 NONE
        ectA 2252991 .. 2253001 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS10945 2251951 .. 2251973 -  -6.2  -2.78463   AGCGTGTGCATCATA           CGGCGCCA TTGTACG TGGCGGCG           CGCCGGATGCCCCCT  47 39
CXD78_RS10940 2251338 .. 2251383 - -11.7  -3.04144   CGGCGAGGGCGAACA GGCCTGAGGCCGCGCGGGCCTG GCT CAGGCCTGCACGTCC-CAGTCG CCGCGCCCGCGGGTG  65 4
        tsaD 2246937 .. 2246955 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACTGGTG 100 204
CXD78_RS10905 NONE
CXD78_RS10900 NONE
CXD78_RS10895 NONE
CXD78_RS10890 NONE
CXD78_RS10885 2241024 .. 2241051 - -15.5  -3.75153   GCGCGCCAACGCAAA        CGTCCCGGGGC GTTGCA GCCCCGGGGCG         TCATTCCTGCGGATC  85 49
CXD78_RS10880 2239978 .. 2240031 - -14.8  -3.55444   GGGCCATGCCGGAAA CGGCTGTCCGAGCGGACGCCCCGTCC CCCACC GGACGGGACGTCC-C-CGG-CAG-CG CCTCAGAAGGTCCGC  81 28
        rlmD 2238476 .. 2238507 -   -18  -3.25169   CGAAGAACTGAGCAA      CACCGGGCGGCG CTGAACGC CGCCGCCCGGCG       GGCCGCCTCAGGCAG  89 33
CXD78_RS10865 2237641 .. 2237694 -  -4.3  -3.52877   ATGAAGAGATGATAA TTGTTAGCTATCAATTAATAAAATTT AAT AAATCTAATTAATTGATAG-TCTCAA GCAATCGATCGCTAA  52 48
CXD78_RS10860 2236820 .. 2236843 -   -21  -4.32201   CGAAGGAAGGGAAAA          GCCGGCGGCG GCAG CGCCGCCGGC           CAGGCATCAGGCCAG 100 32
CXD78_RS10855 2235136 .. 2235156 -  -8.1  -3.53811   CTGACCGTGCGCAAA            CCCGCCGCC GAC GGCTTCGGG            CTGCACGGCAGCGGC  60 170
CXD78_RS10840 2231337 .. 2231383 - -20.3  -4.87626   GCCGAACAGGAAAAA GCCCGGCTGGTGCCG-TTCCTC ATGG AAGGAATCGCCACCAACCGGGC CATGTTCCAGGCCGA 100 116
CXD78_RS10830 2230103 .. 2230113 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS10820 2229081 .. 2229120 -  -9.4   -3.5361   GAACCATGCATACAA  CCTATTGAATCTTCACAG CTAG CTGTGAACTGTCAATAGG   TTGTATTCGTCCAGG  64 4
CXD78_RS10810 2227766 .. 2227807 -  -7.9  -3.89354   GGTCGAAACGAACAA TGGCGTGGTGACGCTGACCG GCA CGGTCGGCACCGCCAC-CGA GGCGGATCAAGCAGC  67 268
CXD78_RS10775 2218554 .. 2218589 -   -19  -3.14132   CTGTCCCCGCAGGAA    TCCTGGTGCCTGTCCC CGCT GGGACAGGCACCCGGG     CACTCGGGCACCCGG  90 50
CXD78_RS10765 2216485 .. 2216506 -  -2.1  -2.87132   GGCCGCCCGCAGACA           TGCCCGCGC CGTT ACGCCTGCA            ACAAGGCCCGCAGTT  40 15
CXD78_RS10760 2215187 .. 2215215 - -10.1  -2.77994   CAGAAATTGCAACCA        TTTCCGCGCCGCC CTC GGCGGCGCGCCGA        ACCCGGCCGGCGCTA  57 38
CXD78_RS10755 NONE
CXD78_RS10750 NONE
CXD78_RS10745 2213118 .. 2213133 -  -6.2  -4.83722   AACAGCAGAATAAAA              TTGCAT AACC ATGCAA               CTTGATGCCATAGAC  86 490
CXD78_RS10735 2211695 .. 2211710 -  -8.2   -3.4247   AGAAGCTGAAGAAGA              CCACCG AAGG CGGCGG               CGCGCCGGCGCTGGA  61 343
CXD78_RS10710 2204289 .. 2204299 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS10705 2202868 .. 2202878 -  -2.4  -4.06419   TTTTGCTACAAAGAA                 CCGG CTA CCTG                 TATGCTGACACCCTG  58 432
CXD78_RS10695 NONE
CXD78_RS10690 2199099 .. 2199153 - -15.8  -2.61383   ACCGCTATTGAGAAT GGCCC-TGC--CGCGTCTTGCGCCAGC CGAT GCGGGCGCAAGACGCGAAGCTCAGGCC GTGATGATGTCCAGC  74 19
CXD78_RS10655 2189701 .. 2189720 -  -7.1  -3.42354   CAGGTCAAGGCAGAA            CTGGCCC AGGCCA AGGCCAG             CGGCCAATACACCTT  58 290
CXD78_RS10645 2187757 .. 2187778 - -14.4   -2.6155   CCTGGGAAGACCAAC           GGGCCGCC ATTATA GGCGGCCC            CGCGGCGCGGCCCGG  69 45
CXD78_RS10640 2187420 .. 2187446 -  -7.9  -5.06816   ATTGTCCAAGAAAAA        GCCG-GCGCGCC CGAT GGCGCGCTCAGT         GCGTCAGATGGCGCC  88 21
CXD78_RS10635 2186848 .. 2186859 -  -2.2  -4.05004   GCAGTAGAACAATAA                CGCGG ACG CCG-G                AGAAGGCACGGCACT  58 246
CXD78_RS10630 2186532 .. 2186547 - -11.8  -4.93547   CCAAGCAATGAAAAA              GCCCCC TGGC GGGGGC               TTTTATGGACGCGCT 100 48
CXD78_RS10625 2185674 .. 2185684 -  -3.2  -3.77808   GCGACCAGAACACAA                 GACA CCG CGTC                 GCTTGAAGATCTCGC  56 261
CXD78_RS10620 2185282 .. 2185307 - -16.9  -5.06414   GGCGCGCAACAAAAA         GCCCCACTGCC GCGA GGCAATGGGGC          TTTTTTCATGCGGCC 100 92
CXD78_RS10610 NONE
CXD78_RS10605 2182460 .. 2182486 - -14.4  -3.01924   TATCTCTGGTGAAGA         CGCGCCAGCC GGATGAG GGCCGGCGCG         ATCAACGCTTATCGA  72 78
        clpX 2181075 .. 2181109 - -19.6  -3.05819   CAGATAGCGGGAAGA     TGCAAAAAAACCCGTT ACA AACGGGTTTTCTTGCA     ATGGCGGCCGGGATC 100 46
CXD78_RS10595 2178430 .. 2178454 - -22.9  -5.45726   GATAGCCGAAAAAAA          CCGGGCCCGGA TGA TCCGGGCCCGG          TTTTGCGGGTCGCTG 100 59
CXD78_RS10585 2175934 .. 2175950 -  -7.2  -4.21827   TGAAACACGGGAAAA              CCGCCG GATCG CGGCGA              TGGCGCGCGGGCTCA  72 38
CXD78_RS10580 2174930 .. 2174950 -  -2.4  -3.16564   TTTTCATGGCATCAA            TCCGCCCG TACGC CGAGCGAC            TTGGCCAACGGCACC  42 1
CXD78_RS10575 2174469 .. 2174482 -  -2.3   -2.6563   GCGCTCAATAACGCA               GTTGC ATCA GCCAC                TCGGCCACCATCGCC  38 1
CXD78_RS10570 NONE
CXD78_RS10565 NONE
CXD78_RS10560 NONE
CXD78_RS10555 2171134 .. 2171161 - -11.3   -3.1876   AAGCCCATCCACGAA       CGCGCGC-GCCGG TCGG CCGGCAGCG-GCG        GCAATTCGGCCTTGA  64 125
CXD78_RS10540 NONE
CXD78_RS10535 2167755 .. 2167771 -  -2.1  -3.68351   CCGCCACTACGGAAA              CGTCAGC GCG GCTTCCG              TTTTCCGCAGCAGTT  51 0
CXD78_RS10530 NONE
CXD78_RS10525 2166712 .. 2166728 - -13.7  -3.65812   GGTGGGGCAATACAA              CGTGGCC GCC GGCCACG              CCGCGCTGAAGGCTC  80 47
CXD78_RS10515 2164833 .. 2164862 -    -2  -3.64703   TGCGGGGCATGTAAA       TCCCA-GCGCCGG GGTTG CCGGCGGGCGGCA       GCGGCTGCGCGTGCG  51 392
        uvrB 2159540 .. 2159554 -  -3.5  -2.70932   GCCTGTTTGTAACGA               GCGAA TTTTC TCCGC               TAATTTCCGTCTTTC  41 47
CXD78_RS10490 2158746 .. 2158761 - -11.8  -5.00616   CTCGGTCGGAAAAAA              CCGCGC AGTC GCGCGG               TTTTCTCATTTTGGG 100 96
        iscR NONE
CXD78_RS10480 NONE
        iscU NONE
        iscA NONE
        hscB 2155511 .. 2155531 -  -2.4  -3.32844   CGCGGCACCGCACAA            GCGGGTCA TCGGT TGCCGCGC            ATCGGGCCGGCCGCC  44 81
        hscA NONE
         fdx NONE
        iscX 2152993 .. 2153027 - -24.4  -3.53012   CGCGCGGCCCCGAAA     CGACAAGGGCCCCGTC CAT GACGGGGCCCTTGTCC     GGGCGGCGCGCCGGC 100 48
CXD78_RS10445 2151832 .. 2151866 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS10430 2148940 .. 2148959 - -12.1  -5.60993   CGGGCCATAAAAAAA            CCCCGCG GGGGTT CGCGGGG             CTCAAGCCAAACGCA 100 66
CXD78_RS10420 2146147 .. 2146170 -  -9.4  -3.15249   GATACCGTCGATCAA          GCCGTCGCGC GCCA GCGCGCAGGC           CGTGGTGACGTAGCG  59 364
CXD78_RS10410 2144497 .. 2144521 -  -7.2   -3.4072   GACCTGGCAGGAGAA          GGCGTCAA GAATAGCAG TTGACGCC          GGCCGGCACGAAATG  56 54
CXD78_RS10405 2143612 .. 2143625 -  -2.3  -2.70354   GGGGCTAGAAATCCA               GTTCG ATCT CGACC                GCGTCGCCCACGCGC  38 1
CXD78_RS10400 2143066 .. 2143093 - -10.5  -2.55253   ACGAATCGGAAGTGA        CCGCG-GCGCCC TTGCC GGGCGCGCGCGC        AACGGCCGTCAGGCC  57 34
CXD78_RS10395 2141932 .. 2141974 -  -7.7  -5.59357   ATGACATTAAAAAAA GGGCGGTATCCATTTGCACGC GCC GCGTGTGA--GGATGCCGCCC CGGGTTCCCGCGCCG 100 49
CXD78_RS10390 NONE
CXD78_RS10385 2139164 .. 2139182 - -17.4  -5.78622   GTACGCCAAAAAAAA             CCCGGGCC AGC GGCCCGGG             TCTGTTGCGTCGCCT 100 47
CXD78_RS10370 NONE
CXD78_RS10365 2136260 .. 2136272 -  -6.2  -3.30124   GTTGAGTTGTTATAA                GCGG ACTGA CCGC                TTTCAGCCGGGCGAA  53 28
CXD78_RS10360 2134606 .. 2134663 -  -3.1   -4.2679   GAATTTGCACGAAAA CGATCTCCTACGT-GCTGCGCGGCGCCA TGG CGGCGCCGCGCGGCGACTCAGTTCTTGG ATATTCCCCAGAATA  63 15
CXD78_RS10355 NONE
CXD78_RS10350 NONE
CXD78_RS10345 NONE
CXD78_RS10340 2129794 .. 2129812 - -17.4    -5.252   CATGGCCATAAAAAA             GGCCGGCC AGC GGCCGGCC             CGCAGCGCGTCGCGC 100 42
CXD78_RS10330 NONE
CXD78_RS10325 2126047 .. 2126067 -  -3.2  -2.62616   TCAGGGCCGATACCA           GCGCTGGCA GGAA TGCCC-CGC            TAGGAACGGGAAGTC  39 25
CXD78_RS10320 2125206 .. 2125222 -  -7.9  -3.63991   CACCATGTCGAAGAA              CAGCGCC TGC AGCGCCG              TGCGCCGTTGCGCGG  63 398
CXD78_RS10310 2122733 .. 2122758 -    -6  -4.15044   TCCTGCGTGAAGAAA         CGCCTGCCGA GGCTTA TTGGCTGGCG          TAGAAACTGACCAAT  66 13
CXD78_RS10305 NONE
CXD78_RS10300 2121257 .. 2121288 -  -8.7  -2.94218   ATTTTTGATTATAGA     GGGTCGGCAG-GCCG ATGC CAGCGCCGCCG-CCC      TACTCCTTGCCCGGA  54 25
        alaS NONE
CXD78_RS10290 2118308 .. 2118335 - -21.4  -3.01791   ACGCTCGCGCCAAGA        CAAACGGCCCGC TTGC GCGGGCCGTTTG         CTTGCCGGCAGGCGC 100 41
CXD78_RS10280 2117007 .. 2117025 - -10.2  -4.55295   TTGCGGACAAAGAAA             GCGCTGGC ATA GGCAGCGC             TTTCAAGAAATGCAG  89 139
        rimM NONE
        trmD 2115190 .. 2115202 -  -9.1  -4.08216   CGAGTCGGCCGAAAA                CAGCG TGG CGCTG                CGCTGCGGACTGGCC  72 400
CXD78_RS10230 2108745 .. 2108771 -   -15  -3.17075   GGCGTCTGAACGCAA         GGGCCCCCCGGC GCG GCCGGGGGTTCC         TGCCCATGGCAAGCG  76 85
CXD78_RS10220 NONE
        rlmN NONE
CXD78_RS10210 NONE
CXD78_RS10205 NONE
CXD78_RS10200 NONE
CXD78_RS10195 NONE
        bamB NONE
         der NONE
CXD78_RS10180 2096416 .. 2096430 -  -9.2  -2.52464   GTTTGTTTTAAGTGA               CGGCAC AGT GCGCCG               AAATCAGTACTCTAC  54 118
CXD78_RS10175 2096091 .. 2096120 - -17.2  -4.36595   GAGCCAAAGCGAAAA       TGCCCGCCGGCGC TGGCC GCGC-GGCGGGCA       ATCAAGGGTAATGCT 100 53
        hflX NONE
        hflK NONE
        hflC 2092640 .. 2092669 - -19.3  -4.98531   TGCCCAAACGAAAAA       CGGCTGAGAGGGC GTAA GCCCGCTCAGCCG        TATGCGGAATGTTTT 100 122
CXD78_RS10155 2091364 .. 2091374 -  -6.8  -2.55896   TTTACGAATCAATAT                 CGAG TTT CTCG                 GGAAATCCGGAAATC  47 76
CXD78_RS10150 2090015 .. 2090048 - -18.1   -3.9461   CCTGGCGAATAATAA     CCG-AGGCCGCGCCAC AAC GGGGCGCGGCCCGCGG     CGCCCTACCCCTTGA 100 30
CXD78_RS10145 2089220 .. 2089230 -  -3.2  -3.23452   ATGGCGACAAGCTAA                 GACA ACT TGCC                 GCATCAGTAGCACAG  46 195
CXD78_RS10140 2088876 .. 2088905 -  -6.5  -3.16055   CAAATCCTGGATGAA       TGATTCTGGAATC AATA GATTCGGGAATCA        GGCATCAATACAGGC  51 30
CXD78_RS10135 2086600 .. 2086625 -  -6.1  -4.24002   CCGCAAACCGCAAAA         GGCCATGCGCCG GCC CGGCACATG-CA         TGCCGCCACCCGCCA  70 260
        rpoD NONE
CXD78_RS10125 2083768 .. 2083793 - -16.9  -5.14626   ACCACCAAAACAAAA         CGGGCCTCGGA TTGC TCCGAGACCCG          CATGTTTACTTGGTA 100 36
CXD78_RS10115 2082000 .. 2082016 -  -5.1  -3.78034   CATCGACATCAAGAA              GCTGG GACGTAT CCAGC              GCCCTGGCCACCGGG  58 494
CXD78_RS10095 2079221 .. 2079262 -  -6.3  -3.02511   GCTACCGCCTCAAGA CCTGAACGGCGCGCGCCGGC TCA GCCGGCCGGCGAC-TGCTGG CGCACCCACTGCATG  49 4
CXD78_RS10025 2068322 .. 2068334 -  -3.3  -2.52516   TTGCCGAGGACGAAT                TGCAG GCG CTGCT                GGAGGCGGTGCGGCA  39 62
        bioF NONE
CXD78_RS10010 NONE
        bioD NONE
CXD78_RS10000 2062942 .. 2062952 -  -8.2  -3.53444   CCAGGGTTTCGGAAA                 GGCC CAT GGCC                 ACGGGCGCGGTGACC  62 446
CXD78_RS09985 2061432 .. 2061471 -  -9.4   -3.5361   GAACCATGCATACAA  CCTATTGAATCTTCACAG CTAG CTGTGAACTGTCAATAGG   TTGTATTCGTCCAGG  64 4
CXD78_RS09970 2056770 .. 2056784 -  -5.6  -3.78934   CCCGGGTTAGAAGAA               GCCCAG GGC CTTGGC               GCTGTAGCTCACCAG  60 2
CXD78_RS09955 2053514 .. 2053524 -  -8.2  -3.33162   CAGCGTATTCGAGAA                 CGGC AAT GCCG                 ACGCCACGTTGACCA  59 280
CXD78_RS09945 2051516 .. 2051532 -  -9.3  -2.75481   TGCCAATTCCAACCA              GGGGGCC GCG GGGCCCC              TGCCACCCAGGAGCA  55 392
CXD78_RS09935 2050167 .. 2050193 - -13.6   -3.7795   CCAAAGCCCAGCAAA         TGGCCGCCGGCG CGG CGCTCGCGGCCA         AGCGCGGCGAATCCA  82 280
CXD78_RS09925 2049154 .. 2049181 - -17.8  -3.02144   TTACCGTCGCCAACA        TCGCGGT-GGCGC TGC GCGCCTACCGCGA        AACCACGCTGCGCGA  82 361
CXD78_RS09915 NONE
CXD78_RS09910 2047442 .. 2047455 -  -4.5  -3.02144   GCAGGCGCTCGAAGA               GGTCA TCAC CGACC                TGCAGCGCCGCGGCG  46 208
CXD78_RS09890 2043077 .. 2043087 -  -3.2  -2.78816   CCAGCCCCTACGACA                 GCAC GGT GTAC                 GACCCGCCCAGCTAC  40 329
CXD78_RS09860 2038093 .. 2038108 -  -3.2  -2.52516   GCGTCGACCAGCAAG              GCCG GGCGATGG CGGC               GATCAATATCCGCTG  39 120
CXD78_RS09840 NONE
CXD78_RS09835 2034161 .. 2034189 - -10.2  -3.52073   GCTGCAATACCAGAA        GCAGCTGCGCCT GCACG AGGCGCACCGGC        TGATGGTGGCCGAAA  65 177
CXD78_RS09805 2028028 .. 2028052 -  -2.7  -4.07568   GGCGCCGGCGCAAAA          CAGTGTTGCAG CCG CCGCAATGCCG          TGCCCGCTGGTACGG  59 49
CXD78_RS09800 2026731 .. 2026777 -  -9.6  -3.68222   CGCCAATTCGAACAA GTCGCACGCGCGCCAGGTCG-ACG TGG CGCGCGACCTGGC-C-CG-GCAAC TGGCCGGCGGCGACC  68 224
CXD78_RS09785 2023838 .. 2023879 - -14.3  -3.19513   AGAACGGCAACCTAA CCCCCGGGTGCCTGTCCCC ACAG GGGGACTGGCACCCGCCAA  TTGCTTGCCTGTCCC  73 126
CXD78_RS09775 2021969 .. 2021979 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS09760 2019528 .. 2019556 -  -8.1  -4.10552   TTCCACTAAAGCAAA        TCCGACATGGC ACAGGCG GCCAAGCCGGA        CAACGGCACGCCGGC  69 395
CXD78_RS09750 NONE
CXD78_RS09745 NONE
CXD78_RS09740 NONE
CXD78_RS09735 2015683 .. 2015710 -   -14  -3.02144   GCAGGCCGCCGAACA        CGCCCGTCGGCC GCCA GGCCGCCGCGCG         CGCCAGCGCCGCGTC  72 225
CXD78_RS09725 2013533 .. 2013560 - -10.6   -4.2535   ACACCAGACGGAAAA        GCCTTGGA-CACG CCA CGTGGTCCAGGGC        TTTTTTGTTTCCGGC  89 104
CXD78_RS09690 2008226 .. 2008260 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS09655 NONE
CXD78_RS09650 1998881 .. 1998930 -  -5.6  -3.29144   GGATGGTGTTGATAA TTGTGCGCGGCCC--CCGCGGGCCG GCG CGGCCCGGTGTCAAGCCGCGC-CGA GTATTGTGATCGAAC  51 12
CXD78_RS09645 NONE
CXD78_RS09640 1996560 .. 1996576 -  -3.6  -3.14344   GAGGTGCTGCACGAA              TGGGGC CTGGC GCCCGA              GCGCGTGGCCGGCGC  45 102
CXD78_RS09605 NONE
CXD78_RS09600 1989269 .. 1989281 -  -3.3  -3.65046   GCCGGAGGGGAAGAA                CAGCG GGG CGATG                GCGATCAGCGCGGCC  53 82
CXD78_RS09590 1987211 .. 1987265 - -12.1  -3.01712   GGCTGGCGGGCAACA GCCACGTGTCGGCCGCGGCCTTGATGG GCG CCACCACGGCGGCGGCC-ATGC-TGGC CGGCGGCCCGGCTTT  67 277
        queF 1984064 .. 1984090 -  -7.9  -2.52464   TGCTGGCGCAATGGA         TCGCGATGCAG GCGCG CCGCACCGCGC         TGAACGCGGCTATTG  49 35
CXD78_RS09505 1967937 .. 1967976 - -11.3  -3.28712   CCTGGGGCTGGAGAA  CCGCCTGGCCGACCGCA TCGGCC TGCTGTCGGGCGGGCAG   CGCCAGGCGGTCAGC  66 387
CXD78_RS09415 1948900 .. 1948919 -  -3.4  -2.82595   TTGAACCACCGAAAC            GCGTGCGG CAAG CCGTAAGC             CACCTCAGGACCTGT  41 175
CXD78_RS09410 NONE
        rpmG 1948169 .. 1948190 - -18.7  -4.86731   CCTTGCCAAATAAAA           CGGCCCCGC CCTG GCGGGGCCG            TTCACCATGGCGCGC 100 68
CXD78_RS09380 1943293 .. 1943323 - -22.6  -3.85698   TCGCCGCCGCATAAA       CGAAGAGCCCGCCG GTG CGGCGGGCTCTGCG       GTTTGACCTGAGACG 100 49
CXD78_RS09375 NONE
CXD78_RS09370 1941453 .. 1941493 -  -2.4  -5.00884   ACTCGTGCGAAAAAA TAGGTAACGGACCGCGCCC GGCA GGGCGCGGGCGGTCAAA-A  CCATCGATTATAGGA  79 45
CXD78_RS09365 NONE
CXD78_RS09360 NONE
CXD78_RS09355 NONE
CXD78_RS09350 NONE
CXD78_RS09345 1935183 .. 1935193 -  -2.4  -3.01712   GCGTTTCCGGGAAGA                 CCTG TGC CTGG                 CGGCGGGCGCCGATA  41 104
CXD78_RS09335 NONE
CXD78_RS09330 NONE
CXD78_RS09325 1931595 .. 1931619 - -13.6  -4.09685   TTTTATTGCTCAAAA         CCCCGC-AGCC TCAC GGCTCGCGGGG          TTTTGTTTTTGGGGG  85 355
CXD78_RS09290 1923814 .. 1923832 -  -8.1  -3.20348   GCGAGTAATAGGCAA             GCGCTGC GAACA GCAGCAC             CCAGATGGCGAAGGT  54 285
CXD78_RS09275 NONE
CXD78_RS09270 NONE
CXD78_RS09265 1918569 .. 1918583 -   -10  -3.33696   GGCTTTTCCAAGCAA               TTCGCC AGC GGCGAA               ACCAGCGGCTACGCC  63 336
CXD78_RS09240 1915241 .. 1915261 -  -4.7  -3.62046   CCATTCGCCCAAGAA           CCTGGCCA TGGCGC TGGCC-GG            CGAGGCCGGCGAGCT  54 285
        acnB 1911672 .. 1911691 - -16.4  -4.91852   CGCAGCAAAAAGAAA            GGCCCGCC TTGC GGCGGGCC             TTTGTCATGGCCGAA 100 48
CXD78_RS09220 NONE
CXD78_RS09215 1910402 .. 1910412 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 43
CXD78_RS09210 1909264 .. 1909276 -  -4.8  -4.07568   GGGGGCGCCTGAAAA                CTGG GACTA CCAG                GCTGGCAGCCTGACC  63 147
CXD78_RS09190 1905238 .. 1905258 -  -3.8  -4.09864   ATCGATGCGTCAAAA            GTTCCCGC GCGAG GCGGGCGC            CGGGCCGACGTGCTC  61 108
        acnA 1902341 .. 1902364 - -19.6  -5.26875   CGTCCAACGAAAAAA          CCCTCCGGCC AGCA GGCCGGAGGG           TTCGGGTCGCGCAGG 100 59
CXD78_RS09175 1900115 .. 1900135 -    -4  -3.79687   ACGCGGCAGAAAATA           TCGGCG-CGC ATG GCGGCGC-GA           TCCGGTCAGTGGAAC  57 31
        earP 1898962 .. 1898978 -  -2.2  -2.64274   AGGCTGTCAAAGTGA              GGCC TTGAGCACC GGCC              GATCCGGGCAAAGCA  38 60
         efp 1898263 .. 1898282 - -16.4  -5.75342   CCGGGGCAAAAAAAA            CGGGCCGC GCAT GCGGCCCG             TTTCGGTTGCGCCTG 100 56
CXD78_RS09060 1878101 .. 1878113 -  -5.5   -3.2614   GATGCCCCATACCAA                GCACA AAC CGTGC                CAGCTTTTTTCAAGA  51 256
CXD78_RS09040 1874868 .. 1874921 -  -8.8  -2.82623   CGGGGCGGAGAACGA GTAGGCGGGGATGCGGTGCCTGTCCC CGTG GGGACAGGCACCG--TGCCAACCGTC AATCGTTGACGAAGT  54 24
CXD78_RS09000 1863601 .. 1863643 - -10.5  -3.40403   GGGGCTGGACGACAA GCAGGTGATGCAGGCCGCCC ATGC GCGCGGCGTGC-TCACGCGC GCTGTCGCGCTACTA  65 171
CXD78_RS08990 1860830 .. 1860873 -   -34  -3.06815   ATCCTCCTCAATACA GACGCGGGATGGTGGCGCCC ATGG GGGCGCCCCCATCCCGCGTC GAACGATCCAAACAA 100 41
CXD78_RS08985 1859295 .. 1859318 -   -21  -5.47399   GCAAGGCGAAAAAAA          GGCCGGCGCC CGAA GGCGCCGGCC           TTGCTTGCCCGCGGG 100 47
CXD78_RS08980 1858199 .. 1858229 -  -5.4  -2.71712   TGCTCGCCCTGAAAG      TCAGCCGGC-CCT GCGACG AGGTGCTGGCCGA       GGTCGTGCCCTAGGG  45 107
        pgaA NONE
        pgaB NONE
        pgaC NONE
CXD78_RS08910 1841847 .. 1841861 -  -5.6   -4.1891   CTGGCCGAACAGAAA               CTGTCC AGC GGGCAG               GCCGACCTGGTGGCG  66 180
CXD78_RS08895 NONE
CXD78_RS08890 NONE
CXD78_RS08885 1839054 .. 1839064 -  -2.4  -2.54523   GCAGACTGGAATGCA                 TGGG TTA CCCC                 TGGAGGTGGGTTTTC  38 19
CXD78_RS08880 NONE
CXD78_RS08875 NONE
CXD78_RS08870 NONE
CXD78_RS08865 NONE
CXD78_RS08860 1833425 .. 1833452 - -18.6  -3.11687   GCAAGCAGTACCGAA        GCGGCTTGAGAA GACA TTCTCAAGCCGC         TTTTTTGCGCCTGTC  90 189
CXD78_RS08825 1826479 .. 1826494 -  -3.2  -4.07568   CCGCGCGGTCGAAAA              GGGC GAGTTGCG GCCC               GATACCCCGGTGGAA  60 198
CXD78_RS08770 1817372 .. 1817393 - -14.5  -4.93696   GCCAAAGATCAAAAA           GGCCCTTGA GCAA TCAAGGGCC            TTTTTCTTTTGCGGC 100 209
CXD78_RS08730 NONE
CXD78_RS08725 1808995 .. 1809005 -  -2.4  -3.06796   CGCCAGCTTATTCAA                 GGAC TTC GGCC                 TTTTCGATGATCACG  41 7
CXD78_RS08720 1808014 .. 1808039 - -19.1  -4.55798   TACGCCAAATGAAAA         GAGCCTGTCCC GACG GGGACAGGCTC          TTTTTCCCGGCGCGG 100 204
CXD78_RS08700 1803652 .. 1803681 - -22.3  -2.62616   CGATGGCGTACAGCA       GTGTGCCTGTCCC GGCG GGGACAGGCACAC        TGGCCGCCGGAGTGG 100 87
CXD78_RS08690 1801428 .. 1801444 -  -5.7  -3.09803   CAAGGCCAGCGAATA              CCGCGAC AAC GGCACGG              TGGTCAATGTGCGCG  48 194
CXD78_RS08675 1798384 .. 1798416 -  -8.5  -3.61715   CATCCTGTCGAACAA    CCG-CCGCCATGCGCC GTTC GGC-C-TGGCGGGCGG     CGAGGCCGGGGCGAT  63 184
CXD78_RS08655 NONE
CXD78_RS08650 NONE
CXD78_RS08645 1790883 .. 1790894 -  -7.2  -3.27923   GGTGAACAGCAGCAA                GGCC ACCA GGCC                 GCTGGCCACCAGCGC  54 111
CXD78_RS08635 NONE
CXD78_RS08630 1787616 .. 1787635 -  -2.7  -3.58343   CCGACGAGCCGGAAA            CCGCGGC GAAGAT GGCGCAG             CCGATGACGTTGGTG  49 332
CXD78_RS08590 NONE
CXD78_RS08585 1763621 .. 1763638 -  -3.4  -3.73775   CCTATGGCCAGCAAA             GCCTGCA TAGCC TGC-GGC             GGCTGCACCGGGCCG  55 419
CXD78_RS08535 1756579 .. 1756591 -  -3.3  -3.13371   CAGGCCACTAATATA                CCGAA GCG CCCGG                CGAATAAAAATAGCG  44 76
CXD78_RS08530 1755683 .. 1755698 -  -7.5  -3.39895   GTCGGGAGGAACGAA              GCCGG AAACCG CCGGC               GCAAGCGGGCCCAGG  59 133
CXD78_RS08525 NONE
CXD78_RS08520 NONE
CXD78_RS08515 NONE
CXD78_RS08510 NONE
CXD78_RS08505 NONE
CXD78_RS08500 1748982 .. 1749002 - -10.4  -2.70932   GGGCGGGGTGAATCA           GCGCGGCGC GTTG GCGC-GCGC            CACCATGGCGTCGAG  57 2
CXD78_RS08435 1736099 .. 1736109 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS08430 1735050 .. 1735060 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS08425 NONE
CXD78_RS08400 1727584 .. 1727614 -  -5.2  -3.14602   TCTAGTCGACCAAGA       CCGGACGCGCTCCC TAG GGGAGCAGGCGCGC       CTTGACCTGCTGCGA  49 8
CXD78_RS08365 1719653 .. 1719663 -  -8.2  -3.21747   GGATGGGAGGAGTAA                 CGCG CTG CGCG                 GGCGCGTCGCGACGC  58 106
CXD78_RS08360 NONE
CXD78_RS08355 1717068 .. 1717082 -  -2.7  -3.75169   GACGACTCCATGAAA               CGGGG ACCGG CCACG               CGGGGCAGGGATTCT  53 39
CXD78_RS08350 1716180 .. 1716214 - -14.9  -3.63515   GCCCATCGGCAAGAA     GGTGGGCCTGGCCAC CGAAC GCGGCATGGCCCACC     TCGTCATCGACGAGC  83 64
CXD78_RS08275 1702394 .. 1702415 -  -3.6  -3.53012   CCCTGGCCGCCGAAA           CCCGCGAC CAGGGC ATCGCGGC            CAACGCGGTGCTGCC  49 205
CXD78_RS08255 NONE
CXD78_RS08250 1697440 .. 1697458 -  -6.7  -3.21416   CATGGCGACGATCAA            CGACCGCA GCGT TGCGG-CG             TCGGGCGGCGTCTTC  52 168
        arsH 1696200 .. 1696210 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 255
CXD78_RS08230 1694734 .. 1694768 - -17.1  -2.66316   CGTCCTACGACATGA    CGCCGCC-GGCCGCCA AGGA CGGCGGCCAGGAGGCG     CCGTGAGCGACGCCC  80 453
CXD78_RS08210 1691329 .. 1691346 -  -4.8  -3.16742   CTCAAGCCGGAGTAA             GGCCGCC GCTCA GGCG-CC             GGGAAACCGCATGGG  47 17
CXD78_RS08190 1687611 .. 1687622 -  -5.8  -2.62184   TGCCCGCTCAGACGA                TGCG CGTG CGCA                 AGGTGCCGATCTGCG  44 6
CXD78_RS08185 NONE
CXD78_RS08180 1685562 .. 1685572 -  -6.8  -2.94912   CCTTGAAGTTATAGA                 GCAG GTT CTGC                 CTGGATGCGCGGCGC  51 59
CXD78_RS08175 NONE
CXD78_RS08170 1683298 .. 1683309 -  -7.2  -3.14132   CCTGGTGCGCACCAA                CCCG CGCA CGGG                 CCGGCGCTCGCTCTA  53 253
CXD78_RS08160 1681721 .. 1681739 - -10.4  -3.68073   CAGTTCATGGAAGAA             TATACGTC ATT GACGTATA             TTTCAATCGCCAGCA  70 109
CXD78_RS08150 1681164 .. 1681189 - -13.3  -2.79831   GCAACCGCCAGCACA         CCGCCAGCG TGGTGCTG CGCTGGCGG          TTCTGAATCGCAGCT  67 45
CXD78_RS08140 NONE
CXD78_RS08135 NONE
CXD78_RS08125 1672992 .. 1673040 -  -7.3  -2.84192   GACATGAGCAGTACA CCCTTGCGGGCCGGGCGCGCGGCG GCGC CGCCGCGCG-CCGAAGCGC--GGC CGCTGGCCGGACTGT  50 439
CXD78_RS08070 1661382 .. 1661395 -  -9.5   -2.5092   GAATATTTTATGAAT               GCGCG CGGC CGCGC                GGCGCGGCCTGGAAG  54 61
CXD78_RS08065 NONE
CXD78_RS08060 1659339 .. 1659364 -  -9.7  -3.24232   CTCCCTTGAAAGACA         CGCTCCTGCCGA TTC TAGGCAGG-GCG         GCGGGCGGATCGGCC  61 120
CXD78_RS08055 1658487 .. 1658497 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS08050 1657456 .. 1657467 -  -5.8  -3.01712   GGCTCGCGCCGAAGA                TCGC GCCG GCGA                 CCGAGCCGACGCCGC  47 41
CXD78_RS08040 NONE
CXD78_RS08035 1655584 .. 1655594 -  -3.2  -4.09685   TCGTACGGGCCAAAA                 CACC TCC GATG                 ACGCGAGTGCCGCGA  59 252
CXD78_RS08030 1654655 .. 1654676 -  -8.7  -3.30771   CGAGAGCGTGCAGAA           CGCCATCGAC CAG GCCGA-GGCG           GTGGCCGACGATATG  58 328
CXD78_RS08020 1652365 .. 1652383 - -12.4  -3.57144   CGCTGCATTGGGAAA             GCGTCGAC GCG GCCGACGC             CGCGGCGGTGCTGGA  74 344
CXD78_RS07950 NONE
CXD78_RS07945 1633026 .. 1633061 -    -9  -4.70266   AACAGCAGGGAAAAA   GA-GGC-CCCGCGCCG TGCCCG CCGCGCGGGCGCCGTC    GTGCTGGACGGGCTT  86 94
CXD78_RS07940 1630705 .. 1630726 - -15.9  -4.77165   GCGCGCAGAAGAAAA           GCCGGCATC GAGA GATGCCGGC            TTTTTTCTTGCCGGG 100 306
CXD78_RS07920 1627262 .. 1627280 - -10.2  -2.62184   CCTCGCTGGAGACCA             TCCGCCAC ATG GTGGCGGC             CGGGATCGGGGTGAC  55 278
CXD78_RS07885 1618264 .. 1618322 - -12.3  -4.06419   TTCGTGGACAAATAA GGCCGTGCGCCGCCA-GGAAAAGCCGCC TTCG GGCGGTTTTTCTTTGGCCGCGCGCCGGC GCCGTTCATGCGTCG  83 31
CXD78_RS07875 1616007 .. 1616034 - -15.6  -4.59773   TGCTACGGGGAAAAA        TGCAAAGCGGCC GGAT GGCCGCTTTGCC         GACAAACAAGGCAGT 100 107
CXD78_RS07870 NONE
CXD78_RS07865 1613478 .. 1613488 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS07860 1612155 .. 1612166 -  -2.2  -3.21099   CCGCCCGAGCACGAA                GAGCG CGC CGC-C                TACCTGGTCGAGGGG  43 333
CXD78_RS07845 1609347 .. 1609400 - -19.6  -3.01712   CCGGGCGGTCGAACA CCAGCAGGCGGCGGCC-CGGCAGGCCG AAC CGG-CTGCCGCGGCTGCCG-CGGCCGG GACGGCGCCGGCCCC  87 294
CXD78_RS07810 1600474 .. 1600502 - -11.6  -2.65298   GCCACGCAGGAGAAT        GCCGCCATGGCC GAGCA GACCGCGGCGGC        GGCGGCCTCGCTGGA  61 105
CXD78_RS07795 1596303 .. 1596338 - -20.4  -2.84602   GGCACTGCAGTAAAC    CCGCGTGCCTGTCCCC GCAC GGGGACTGGCACGCGC     TGAATCCGGGGTGCC 100 154
CXD78_RS07785 1594277 .. 1594292 -  -6.2  -3.07355   TTGAAACAACAACGA              CTGAAA AGGA TTTCAG               GGGCACCGGTCTATG  49 230
CXD78_RS07780 1594050 .. 1594094 -  -3.6  -3.02471   GCGCCAGCAGATACA GTGGCATGAG-GTCATCGTGCT AGT AGTA-GATGACGCGCACGCCGC CCGTGCCTTCCATGA  44 0
CXD78_RS07775 NONE
CXD78_RS07770 1593417 .. 1593429 -  -9.1  -3.28712   GTGCGTGTCCGACAA                GCCGT TGC ACGGC                GAGCTCAAATTGCCC  59 243
CXD78_RS07760 1590757 .. 1590778 -  -7.9  -3.61398   TGTGCTGTTCAACAA           TGCCGGGCGC GGC GCGCC-GGCC           GTGCCCATCGAGGAG  60 501
CXD78_RS07750 NONE
CXD78_RS07745 1588584 .. 1588594 -  -8.2  -4.09685   CCCGAGGGCGGAAAA                 GCCC CCG GGGC                 CAGCAAGCCCTCGCG  72 45
CXD78_RS07740 NONE
CXD78_RS07735 NONE
CXD78_RS07730 1584988 .. 1585014 - -13.6  -3.14132   TCGGGTGGCCAGCAA         CAGCGCGTGGCC ATC GCCCGCGCGCTG         GCCATCAAGCCCAAG  72 308
CXD78_RS07700 NONE
        bamC 1578946 .. 1578969 - -18.2  -5.78622   CCAGGCCAAAAAAAA          CCGGCAAGCC TTGC GGCTTGCCGG           TTTTTTTGCGCCGCT 100 66
CXD78_RS07675 1573361 .. 1573389 - -20.3  -3.61398   CTGCGTGTGCAACAA        CTGCGCAACGCGC GCC GCGCGCCGCGCAG        GCCGGCATCAGTCGT 100 33
CXD78_RS07665 NONE
CXD78_RS07660 NONE
CXD78_RS07655 1568594 .. 1568608 -  -4.2  -3.14931   GCGATTCGGTATCAA               TCCATG CAG CATGGC               CAAACACTCCAAACG  45 52
CXD78_RS07650 NONE
CXD78_RS07645 NONE
CXD78_RS07640 NONE
CXD78_RS07635 1564894 .. 1564919 -  -8.2  -3.40403   GCCGCTGGACGACAA         GGCGGCCGCCG ATGCG CTGCGGC-GCC         TGCGCGGCCTGGACG  61 483
CXD78_RS07625 1563787 .. 1563818 - -14.6  -3.02829   CAGAGGCGGGTAAGA      TCGAATGGCTGTAT GGGC ATACAGCCATTCGC       GCGCCTGGGGCGCAG  74 50
CXD78_RS07620 NONE
CXD78_RS07615 1562106 .. 1562140 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 264
CXD78_RS07570 1549450 .. 1549482 -   -20  -2.64616   CGGGGACGGAGACGA     CGGTGTGCCTGTCCC AGCG GGGACAGGCAC-CCG      CACGGGCAGGCGCCT  95 77
CXD78_RS07565 1547846 .. 1547880 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 201
CXD78_RS07530 1541574 .. 1541615 -  -2.1  -4.01411   TACGAAAAACTCAAA TCCGGATCGTGGATATGCGG GCG CGGCATCGCCGCG-TCCGCA CGCTTACTGTGCCTT  56 29
CXD78_RS07525 1540142 .. 1540164 -  -9.8  -3.28712   CTGGGTGGTGGACAA           CCAGCACGGC GAA ACCGTGCTCG           AACTCGACGCCACCA  63 207
CXD78_RS07440 1526447 .. 1526477 - -19.6  -3.14344   CAGGTGGTGCAGTAA       GGCGGCGACCGGCG CGG CGCCCGGCGCCGCC       CGCCCGCATGGAAAA 100 79
CXD78_RS07425 1523243 .. 1523286 -  -9.4   -3.0127   CGAGGGAATTACAGA TCGCCTGAGCGAGGCAGCGG CGCT CCCCTGCCTGGGTGAGGCGC GCGTCCCCGGTTTCA  57 38
CXD78_RS07420 1521840 .. 1521888 -  -3.5  -3.39449   TCCGAGCAACATGAA GGGCTC-CTTCGCGCGCGCCGC GGCAAG GCCGCGCGCGCGCCGTGCGTCG TGCGCCTCAGCTGGT  49 32
CXD78_RS07415 NONE
CXD78_RS07410 NONE
CXD78_RS07405 1519694 .. 1519714 -  -3.3  -3.35046   GCAGTCTCGGAAAGA            CGGATAT TCCCAAT ATACCCG            TTGCCCGGCGGTCCG  46 59
CXD78_RS07400 1518850 .. 1518884 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 411
CXD78_RS07355 1511716 .. 1511733 -  -8.3  -4.13767   GGTGGCACGGCAAAA             CGGTGCC TTGC GGCGCCG              TTTTTTTCGTTGCAT  72 151
CXD78_RS07320 NONE
CXD78_RS07315 1503546 .. 1503556 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 383
CXD78_RS07305 1502428 .. 1502462 - -12.9  -2.61582   CAGGGCATTCAGAAG    CG-CGGACCTGGCCTT GTAC AAGGCCAAGGCCGACG     GGCGCAATCGTGTCC  62 105
CXD78_RS07260 1493126 .. 1493145 - -13.6   -5.5112   GGGACCAAGAAAAAA            GCCCCTGA CGGA TCAGGGGC             TTGCAATGTCTGGCG 100 36
CXD78_RS07255 NONE
CXD78_RS07250 NONE
CXD78_RS07245 NONE
CXD78_RS07240 NONE
CXD78_RS07235 NONE
CXD78_RS07230 1485746 .. 1485764 - -13.8  -2.61264   GGCTCCATGGACAAG             GCCGCCCG GAG CGGGCAGC             GGCCTTCCATGATGA  69 111
CXD78_RS07225 1484492 .. 1484509 -  -7.7  -4.18197   AGTGCGTATGGAAAA             CGCCGAA GATG TTCAGCG              TGCCTGGACCTTGGC  74 20
CXD78_RS07220 1482082 .. 1482107 -  -4.7  -5.29846   AACCCGAAAGAAAAA         CCCCGCAGA CGCTCGGT TCTACAGGG          GTTTCCTGGGTATTT  93 107
CXD78_RS07215 1481164 .. 1481175 -  -3.6  -3.12668   CATCTGGAGACCCAA                GCGC ATTT ACGC                 CGGCGTCGGCGCCTG  45 85
CXD78_RS07205 1479885 .. 1479922 -  -9.8  -3.05384   TTTTTCTGGATCGAA   CCGCCGGTCA-TCAGCC AGGAA GGCTGACCGGCCCGCGG   GCCGTTATGCGCCAG  60 30
CXD78_RS07195 1478976 .. 1479013 - -10.5  -2.59742   CGCAATGGCGACAAT   CCGCAACCGCCCGCAGTC CGG GAC-GCCGGCGTTTGCTG   CGTTGCGGCAAATTT  57 153
CXD78_RS07190 1478504 .. 1478523 - -10.6  -5.40072   CGTGCCGCAAAAAAA            GGCCGCCC ATCC GGGCGGCT             TTTTCATTGATTTGC 100 53
        trxB NONE
CXD78_RS07155 NONE
CXD78_RS07150 1469935 .. 1469945 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 77
CXD78_RS07145 1468913 .. 1468952 -  -9.4   -3.5361   GAACCATGCATACAA  CCTATTGAATCTTCACAG CTAG CTGTGAACTGTCAATAGG   TTGTATTCGTCCAGG  64 4
CXD78_RS07140 NONE
        kdpF NONE
        kdpA NONE
        kdpB NONE
        kdpC 1460169 .. 1460189 -  -6.7   -2.8655   GGCACGCATACTATA            CGCGCGCCG CTT CAGCGCAGG            CGGTCCAGCGCCAGG  50 16
        kdpE 1456451 .. 1456485 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 203
CXD78_RS07075 1450962 .. 1450990 -  -5.8  -3.33261   GCTCAAGGCCTACAA        GCGTGGCGCCGC GGGCA GCGCGGCCACGG        CCAACGTGCGCAAGA  52 186
CXD78_RS07060 1449189 .. 1449202 -  -9.5  -2.75183   AGTGGCAGTCAATGA               GGCGC GACA GCGCC                GAGGCATGATAAGGA  55 87
CXD78_RS07055 NONE
CXD78_RS07050 1446942 .. 1446967 -  -7.5  -3.16881   GATCGACGCCACCAA         CGCCG-GCAGCG TCG CGCTGCACCGCA         AGCTGGGGTTCGTGC  53 148
CXD78_RS07035 1442948 .. 1442977 - -22.3  -2.62616   TCATGGCGTAGAGCA       GTGTGCCTGTCCC AGCG GGGACAGGCACAC        TCTGTCGCGGATGTC 100 97
CXD78_RS06995 NONE
        recN 1432913 .. 1432953 -  -2.3  -4.75776   AAGCGAACTGAAAAA  CATGGGCCTGAAGGCGACG TTT CCCCGCCTGAAGATCCTTG  ACATTTTTCGTAAAT  76 453
        bamE NONE
CXD78_RS06975 1431128 .. 1431140 -  -4.7  -3.29144   CGATGGCCGCTACAA                GCTGG CCG CCGGC                TGGCTGATCGATCAA  49 263
CXD78_RS06965 1429995 .. 1430016 - -14.5  -5.63236   ATGCAAAAACAAAAA           GGCCCAAAC CGAA GTTTGGGCC            TTTTTTGAATCTGGA 100 37
CXD78_RS06920 1419409 .. 1419424 -  -3.2  -3.40403   CCCTTCGCAGGACAA              GGCTTC GTGG GAAGTC               GAGAATAGCGTCGCG  48 53
CXD78_RS06915 NONE
CXD78_RS06910 1416900 .. 1416915 -    -4  -3.90588   TATGGGGTAATGAAA              CTTCTGG AAT CC-GAAG              GGGTATCGCTGCGCG  58 426
CXD78_RS06785 1391759 .. 1391791 -  -8.9  -4.07568   GCGCTTTGGCGAAAA      GCCCGCCGACCGCGC CGC GTACGCGCGGCAGGC      CCGCTTCCTGGCGGG  72 179
CXD78_RS06770 1389151 .. 1389201 -  -7.2   -4.0162   GGGCCACAGGAGAAA CAGCGGCGCCAGCATCCAGTCGAG GAT CTCGCCCAGCAGCGAGCGCTGCGG CGGCGCGAAACTCGG  66 105
CXD78_RS06765 1387756 .. 1387771 -    -4  -3.71917   ATCTTAAATTTGAAA              CAATAG GTAA CTATCG               CGCGTACCAGCCCGG  54 61
CXD78_RS06760 1385895 .. 1385923 - -10.9  -4.60041   AGGGAGCTTGAAAAA        GCCGGATTGGCGC AGC GGTCCAACCCGGC        GGGGGATGGTTATCA 100 38
CXD78_RS06715 1377094 .. 1377107 -  -9.5  -2.70932   CTTCTTGTGCAATCA               GGCCC GCGC GGGCC                TAGGAGAGGGCTTCG  55 25
CXD78_RS06710 1375543 .. 1375565 - -19.2  -5.53288   CGCAAGGCAAAAAAA           GGCCCGACAC ATC GTGTCGGGCC           CGTACGGGGCACGCA 100 243
        rdgC 1373828 .. 1373853 -  -6.7  -4.68724   TGATCGAACAGAAAA         GCACG-CTGGCC GAG GGCCTGGCGGGC         GCGGACGTCATTTAC  82 434
CXD78_RS06675 1370758 .. 1370805 - -21.2  -4.15788   AACGTGCTCAAGAAA GGGGCTGAGCAAGGCGGCCGGC AGGC GCCCGCCGGCATGCTCAGCCGC ACTGGCGCTGGATCG 100 18
CXD78_RS06655 1368232 .. 1368290 -  -2.2  -4.33153   GCCAAGATCAACAAA CTGGAGCTGTAG-TCCGCGCCGGGCTGCC CGTG GGCAGTCCGGCACGCTTCCTCGGC-CC-G TGCGCGCGTGGACAG  65 78
CXD78_RS06645 1366266 .. 1366276 -  -6.8  -3.03159   CGAACGCGCCCAAGA                 CGCT GCG AGCG                 GTCATTGATTGGGCT  51 121
CXD78_RS06600 1358827 .. 1358861 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS06590 1356465 .. 1356477 -  -3.4   -4.2349   CGCGCAGATCGAAAA                TTCC TCGCT GGAA                CAAGGACTTGTCCAG  63 69
CXD78_RS06580 1355040 .. 1355074 -  -2.1     -3.94   GCAAGCCGTAAACAA    CGGGACGTCCTACGCCA AGC TGGCAT-GGACG-CTAG    GTGTGAACTGTCAAT  56 22
CXD78_RS06555 1351487 .. 1351521 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS06485 NONE
CXD78_RS06460 1332809 .. 1332853 -    -7  -3.67792   GTAGATTCAGGGAAA CCACGGGCACGACCGTCA-CC AAGT GGCTGAATGCCGAGCGCGTGG CGCGCGCCCAGCAGT  64 358
CXD78_RS06450 1330756 .. 1330803 -  -8.4  -2.55544   TCATCACGGAAGTGA CCATCGGCTTCAACTATGCGCTG GGC CAGGTCAC-GGTGACGCCGATGG CGCTGCTGATGACCT  51 224
        sulP 1325059 .. 1325074 -  -3.9  -3.54424   GGTGAGCGCCGGAAA              CAGCC TGACCG GGCCG               GGGCCGCTCGCCAGC  51 379
CXD78_RS06360 1312504 .. 1312517 -  -4.5  -3.54459   CCAAGTCGTCGCAAA               GCC-GG AAT CCTGGC               GACGGCCTGCCACCG  52 57
CXD78_RS06330 1306474 .. 1306495 -  -2.9  -2.65264   CGACCACGCACAGCA           GCATGCC-GT CGT ACTGGCTCGC           CGCCACCTACCGCCT  39 47
CXD78_RS06285 1295631 .. 1295648 -  -4.1  -4.31943   GGTACAGAAAAAAGA             TGAAGCG TCCC CGGTTCA              TGGCGGGCGGCGGGA  68 42
CXD78_RS06280 1294829 .. 1294852 - -16.7   -3.0806   GCGAAATCCGCAAGA          GGCGGCGCG CCGATC CGCGCCGCC           GGCGCGCGGGCCCGG  81 48
CXD78_RS06275 1293532 .. 1293542 -  -2.4   -4.4078   GCTGGCCAACGAAAA                 GCCC CAG GGCC                 AGACCATCGCGTATG  68 83
CXD78_RS06245 1286641 .. 1286664 -  -2.2  -4.07568   TTCGGGGCGGGAAAA          GGGGCTGGGC AGGC GCTCAGGCCG           CGGCGGCGCCTGCCG  58 18
CXD78_RS06240 NONE
CXD78_RS06235 1283923 .. 1283948 - -13.3  -2.57132   GGCGCCCGGGATAAT         CGATACGCCGC TGAC GCGGCACATCG          TGCAGGATCGCCAGG  66 269
CXD78_RS06205 NONE
CXD78_RS06200 1277521 .. 1277558 -  -2.5  -4.58395   CGCACGCTGGAAAAA   GCTGATCGACGAGCGCGG GAT CCGCGCGAATTGA-CGGC   CGCGGCCTCGTGCCG  70 112
CXD78_RS06185 1274339 .. 1274381 -  -3.9  -3.84406   CCGCTATGACAACAA CGATCCGCGCCCCTGGCTGG CCGG CCAGGCAGGCTGGCGGG-CG CGCGCTAATTCGGCC  58 339
        queE 1272261 .. 1272283 -  -4.8  -3.64703   GGCGGGTGACGGAAA           TCATCGCG CATCTCC CGCGATGG           GACGGACAGTCATGG  55 35
        queD 1271556 .. 1271580 -  -7.8  -3.31792   GTACGACGCCCACAA         CATCCCGGCGC TCAA GCGCCTGG-TG          GGGCAGGGCGCCAAG  55 266
CXD78_RS06145 NONE
CXD78_RS06140 1268300 .. 1268317 - -11.3   -4.1822   GCCGAGCCGAAGAAA             GTACCGC CCAG GCGGTAC              ACCGCCTTGGAGCGC  89 192
CXD78_RS06125 1265964 .. 1265991 -  -5.5  -2.53263   GCGATGCGCAATTGA        TCGGCG-CCGAC CTGGT GTCGACCGCCGG        GCAGGGCCGCGTGCA  42 428
CXD78_RS06110 NONE
CXD78_RS06105 NONE
CXD78_RS06100 NONE
CXD78_RS06095 NONE
CXD78_RS06090 1249824 .. 1249838 - -11.4  -2.91274   CTCAGCCGAACGACA               GGCTGC CTT GCAGCC               CTTCATTGACCGCTA  61 128
CXD78_RS06080 1248006 .. 1248052 - -12.1  -3.35679   GCGCGTCATCGACAA GCGGCCG-CGCTGATCGCGGCG GGTT CGCAGGGCGCAACGCCGGCCGC CATGGCCGGCGTTGC  73 45
        paaX 1237290 .. 1237315 -  -4.6  -3.62597   CGGACCGGGCAACAA         TGGCGGCGAC GCGCTG GTGGCGGCCA          CGCTGCTGCAGGCGC  54 497
CXD78_RS06005 NONE
        rsgA 1234286 .. 1234310 -  -4.3  -3.78419   GGAGGAAAGATACAA         GGCACC--CCG GGAGT CGGCAGGTGCC         TGTCCTCGTGGGGAC  58 56
CXD78_RS05970 1227766 .. 1227818 -  -7.4  -3.36054   GAAAGCCATAGAACA GGTCGGACGGCAGGTGCAGGCC CTGCGGGTC GGCCTGCGCCAGCAGGCCGCAC GCGGTGGTCTTGCCC  59 151
CXD78_RS05950 1223954 .. 1223981 - -11.2  -3.77119   CATCAACGAATACAA        GCGGCGC-CAGGC CCC GCCCGGGCCCCGC        ATCACGCCGCGCGCG  74 501
        argH 1219461 .. 1219478 -  -9.8  -4.65895   CGCGGCATGTAAAAA             CCCGGC GCGCAG GCCGGG              TTTTTACATGGAGCG  93 49
CXD78_RS05915 1216559 .. 1216569 -  -8.2  -2.80622   AGATAGTCGATCATA                 GCGC GGC GCGC                 GGCCGGAAATCGCGG  52 10
        moaA 1215089 .. 1215099 -  -4.6  -3.05384   CCGCTGCGCACCGAA                 CGGC CAC GCCA                 GGACAGCCGCGAGGA  46 372
CXD78_RS05880 NONE
CXD78_RS05875 1207859 .. 1207877 - -13.8  -3.05463   AGCCCGCCGACTGAA             CGGCGGCG CTA CGCCGCCA             GGCCGTGCTGGCCGA  72 15
CXD78_RS05865 1206673 .. 1206688 -  -4.6  -3.14404   ACAGCAACTACGTAA              GGCTCA GGCC TGGGCC               AGCATGGTGGCGGCG  47 13
CXD78_RS05860 1205131 .. 1205166 - -13.2  -3.00298   CGTGGTAACTACATA    CCCGGGAGCCTGTCCC AGCG GGGACAGGCTCCCTTT     GCCGCGGCAGTCGCT  70 57
CXD78_RS05845 NONE
CXD78_RS05840 1201500 .. 1201518 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACTGGTG 100 297
        cadR 1197493 .. 1197503 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS05820 1196471 .. 1196510 -  -9.4   -3.5361   GAACCATGCATACAA  CCTATTGAATCTTCACAC CTAG GTGTGAACTGTCAATAGG   TTGTATTTGTCCAGG  64 4
CXD78_RS05815 1195322 .. 1195336 -  -2.7  -3.57144   CCCTGCAGCTGGAAA               TGGCC CTGTC GGCCT               ACATGACCGAGCAAG  50 129
CXD78_RS05775 1187211 .. 1187245 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS05755 1183125 .. 1183135 -  -6.8  -3.40878   ACGAGGCGAACAAGA                 GCTC GGT GAGC                 GTGCCCGACAGCGCG  56 335
CXD78_RS05735 1176769 .. 1176789 -  -8.1  -2.62263   AGTCGGGCGAGATCA            CGCTGTCCG GCC CGGCCCGCG            AGATGCTGCACGATC  48 139
CXD78_RS05660 1152350 .. 1152370 - -15.4  -5.13343   CAATGCAAAATAAAA            GGCGGGGC ATGCA GCCCCGCC            TCAAATAATAACGAC 100 92
CXD78_RS05655 1151753 .. 1151768 - -10.4  -4.62069   CCGGCATGGCAAAAA              GGAGCC TTAG GGCTCC               TTTTTTGCGTTCTGG  93 81
CXD78_RS05625 NONE
CXD78_RS05620 NONE
CXD78_RS05615 1143343 .. 1143369 -   -15  -3.60865   GATTCTAAAGCAGAA         CGCCGGCTGCGC GGG GCGGCGCCGGCG         CGGCCGGGTCAGGGT  81 34
CXD78_RS05610 NONE
CXD78_RS05605 1142261 .. 1142277 -  -2.1  -2.64099   CGGTCCGAGCAGAAT              GAGACGC ATG GGGGCTC              CTGATGGGTTTGTTT  38 108
CXD78_RS05600 1141549 .. 1141607 - -13.8  -3.39895   TTGGCTAGCAATGAA GGCGGGCAGGGCG-CGCG-CGGCCGCGCA CCCC TGCGCGGGCGGCGCGGCGGCCT-CGCGGC GCGGTTTAGCTCTGC  77 31
CXD78_RS05595 1140724 .. 1140752 - -18.2  -2.84602   GCCAGGGTACCAAAG        CAACGTGCCGGC ATCGA GCCGGCACGTCG        GGGGGAGGGATTACT  86 36
        murJ 1139064 .. 1139096 -   -12  -4.20516   TGTCGATCCAATAAA      TGCAAAGACCGGCC GTAAG GGCCGGTCTTTGTT      GTGATTTTCACTATT  91 65
CXD78_RS05585 1137859 .. 1137882 -  -6.8  -3.58037   TATGAATTCGGCAAA          GTCAGACATTG TAT CAA-GTCCGAC          GGGGATTGCAAGCCC  58 74
CXD78_RS05580 1137506 .. 1137523 - -11.3  -5.45802   GCGCCAAAACAAAAA             GGATGCC CGCG GGCATCC              TTTCTGCTTGCCGTA 100 69
CXD78_RS05560 1134805 .. 1134815 -  -2.4   -3.7941   CATCGTGGAGAACAA                 GGGC GGC GCCA                 ACGGCAATATCGGCT  54 342
CXD78_RS05515 NONE
CXD78_RS05510 1124953 .. 1124965 -  -3.3  -3.07233   TGACAATGGGCAATA                TAGGC TTA GCCGA                TGCTCTTGGCGGCTT  42 18
CXD78_RS05505 1123161 .. 1123180 - -13.6  -5.40072   CGCCGGGCAAAAAAA            GAAGGCCC CGCA GGGCCTTC             TTCCGGCATGGGTGG 100 44
        pdxA NONE
CXD78_RS05495 1120605 .. 1120635 - -11.1  -3.06183   CTCAGCTCGATGGAA      GTGCGCGCCCG-CGC GCG GCGCCTGGCGCGC-C      AGTGCGGGCAGCTGG  62 459
CXD78_RS05435 1110722 .. 1110740 -  -5.8  -3.14931   TCGAGGCGTTAGCAA             GCGTGGCC GAT GGCAGCGC             CGGGCCCGGGCAAGG  49 98
CXD78_RS05430 NONE
CXD78_RS05425 1108133 .. 1108167 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  50 191
CXD78_RS05400 1102785 .. 1102803 -   -11  -3.55444   CCTTCACGCTGGAAA             CGCTCGAC CTG ATCGAGCG             CCGCATGGGCGAAAT  71 424
CXD78_RS05390 1100039 .. 1100073 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS05365 1093694 .. 1093735 - -26.8  -3.54903   ATATAAAATGGATAA GACCCGATGCGT-GCCGGC AACGG GCCGGCGACGCATCGGGTC GGAAGGGAACGCGCC 100 62
CXD78_RS05360 NONE
CXD78_RS05355 1091895 .. 1091910 -  -3.3  -4.28548   ACGGAGTGATGAAAA              GAATC GTGCGG GATTC               AGCGGTGCGACATGC  63 24
CXD78_RS05350 1090996 .. 1091021 - -20.5  -4.56597   CGGCCGGGTGAAAAA         GCCAAGCCGCC CGAG GGCGGCTTGGC          GGGATGCAGGCCCGG 100 68
CXD78_RS05345 1090781 .. 1090826 -   -28  -5.84381   CCAGCAAGAAAAAAA CCAGCAAGAAAAAAGCCGCT TCCATG AGCGGCTTTTTTCTTGCTGG CCTTGTTGCTGGCCT 100 58
CXD78_RS05340 1089577 .. 1089589 -  -3.3  -4.11216   GCGCGACTCGGAAAA                CCAGC TTA GCTGT                GAACTGTCAATAGGT  59 18
CXD78_RS05335 1088359 .. 1088376 -  -5.5  -3.29144   CCAGCGGCGTCAGAA             CGCCTCT TCGT AGAGTCG              CGTGGCGTCGGCCAG  51 2
CXD78_RS05295 1082176 .. 1082204 -    -3  -3.30441   GAGTATTGGGGACAA       CGCGGCACGGCAC AATT GTGC-GCGGCGAG        AGTTTCGCAGTTTCT  46 101
CXD78_RS05290 1081302 .. 1081319 -  -5.5  -3.15544   GTCCAGCCCCAGCAA             CCGGCCGG CCA CCAGC-GG             CAACTCGATCTAATG  49 490
CXD78_RS05280 NONE
CXD78_RS05275 NONE
CXD78_RS05270 1077310 .. 1077349 -  -6.5  -3.17075   CGGCTCGTAAGGCAA GGCCGTGACATGGCC-GTA CGAA TACAGGCCATCGCACG-CC  TGCGCCTTGCGCATC  51 275
CXD78_RS05260 1075292 .. 1075302 -  -5.4  -3.25823   GCCTGTCTATATGAA                 CTTC ATG GAAG                 CCAGCTCGGAAAACG  51 6
CXD78_RS05255 NONE
CXD78_RS05250 1073173 .. 1073199 - -10.9  -4.52857   ACGTGTCATAGAAAA        CG-GCCAGGACA GCCT CGTCCTGGCGCG         CCAGCCGTCGCGGCC  95 46
        soxR NONE
CXD78_RS05235 1071495 .. 1071520 -  -5.4  -3.34398   GCGCGGGCGCAAAGA         CCGGC-GCACC ATCGG GATACAGCCGG         CAATACTGCCTTACG  51 57
CXD78_RS05230 1069099 .. 1069133 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS05215 1066653 .. 1066669 -  -4.3  -3.14132   CCGCTGCTCTACCAA              CTGAGCT AAC AGCCCGG              CGATTGCTGCCTGTC  47 140
CXD78_RS05210 1066552 .. 1066581 - -17.3   -5.0925   GCCGAAAAGCAAAAA       GGCCGTTAGTGAC TACT ATCACTAACGGCC        TTACAAATCATGGTG 100 36
CXD78_RS05165 NONE
CXD78_RS05160 1059682 .. 1059698 -  -5.8  -3.05596   CATGCCCTGAGCGAA             GGCG-GG CCGG CCGCGCC              GCTGATCACGTATTC  48 332
        panB 1057894 .. 1057909 -  -3.2  -4.07568   TGCCTGTGGCGAAAA              CCCTACG GCG CGC-GGG              AGCGGGTTTGCAGGA  59 253
CXD78_RS05145 1056250 .. 1056284 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 256
CXD78_RS05115 1050349 .. 1050368 -   -10  -3.33261   CCTGAACCGCGACAA            CGT-GGCGG TGG CCGCCGACG            CCATCGCCAGCGTGC  63 72
CXD78_RS05085 NONE
CXD78_RS05080 NONE
CXD78_RS05075 1041601 .. 1041621 -  -8.9  -3.46602   CCGTGGACATCACAA            TGGCGCAGG CGG CCCGCGCAA            GGTTACTCGGTACAA  60 84
CXD78_RS05065 NONE
CXD78_RS05060 1038673 .. 1038695 -  -6.9  -3.35679   CGGCGTGACGCACAA           GGCCGTGGC GCGTT ACCAGGGCC           TGCTGGTCGATGCCT  52 304
CXD78_RS05050 NONE
CXD78_RS05045 1035496 .. 1035518 -  -5.4   -3.7941   CACGGTCTACAAGAA           GCTGATCCGC ATC GCCGACCTGC           ACGACGTCAGCTCGT  58 115
CXD78_RS05030 1032605 .. 1032635 -  -6.8  -3.39784   GGAGCCTGAAGAACA      TGGCCGAGCA-GC ATCCCG GCACGCTCGGCCC       CAGCCTGGTGCGCCA  55 431
        gcvA 1028086 .. 1028128 - -10.5  -3.56092   GGAGCATCGCGCAAA GCGGCGACCTG-ATGGTGGC CATG ACCATCGCGCAGGCCGCCGC GGCGCTCACGCTGCC  67 412
CXD78_RS04990 1024990 .. 1025028 -  -9.6  -3.14132   GGCCTGGCCGAGCAA GTGCG-CCGC-CGCACCGG CATG CCGGTGCGCGCGGTCGG-C  GGCATCGCCGATCCG  59 213
CXD78_RS04980 NONE
CXD78_RS04935 1015746 .. 1015778 -  -3.4  -2.78463   ACCGCTGGCAGGAGA     CCCTCAG-CGGCC TGCCGTTC GACCGGCTGATGG      AGCCGGCCGAAGTGG  40 172
CXD78_RS04885 NONE
CXD78_RS04880 1007210 .. 1007220 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 64
CXD78_RS04875 1006048 .. 1006068 -  -2.4  -2.59267   GGCAAGGACACCAAG            CTGCCCGA TTACG TCGTGCTG            ATCTCGACGCTGGGC  38 163
CXD78_RS04860 NONE
CXD78_RS04855 1002687 .. 1002702 - -10.4  -5.86332   GCAAGGCAAAAAAAA              CCGGTC GCGC GACCGG               TTTTTTTTCGTTCGT 100 58
CXD78_RS04840  999939 ..  999958 -   -15   -4.8622   GCCGGCAATGAAAAA            GGCGGCTC ATGC GAGCCGCC             TTTTTCATTGCACGC 100 49
CXD78_RS04820 NONE
CXD78_RS04815  994743 ..  994771 - -14.6  -5.40072   GGCCGGCGAAAAAAA       GCCCCGCTGG-CG TGGT CGTCCAACGGGGC        GGCTGCATGGCGGGC 100 78
CXD78_RS04810  993217 ..  993245 -  -5.2  -3.36569   GGAAGCCGCCAAATA       CATTGACCGCCGC CAGG GCGACGG-CGACG        ACGCCCATGGTGCGC  53 231
CXD78_RS04800  991377 ..  991389 -  -4.7  -3.55622   GGGAACTGCTGGAAA                GCGGC GAG GCCGA                TGCCTGGAGCCTGGA  54 334
CXD78_RS04790  988261 ..  988271 -  -6.8  -3.31144   TCGCCATGGTCAGAA                 CGAC ACC GTCG                 CCGTGGCGTAATAGG  54 9
CXD78_RS04785  986861 ..  986877 -    -5  -3.15544   GGCCATCGTCATGAA              CGCCTC GGGTT GCGGCG              CCATGGTGAAGGAGT  47 489
CXD78_RS04760  968606 ..  968643 - -16.4  -3.61398   TGTCGGTTTCAAGAA   CGGCACCGACGGCAAT GTGAAG ATCGCCGTCGATGCCA    TCAAGGCCGCCTCGC  85 523
CXD78_RS04740  964947 ..  964968 - -18.7  -5.06414   GTGGCGCAATAAAAA           CGGCGCGCC TTGA GGCGCGCCG            GCATTCCGGGACGAA 100 49
CXD78_RS04710  960713 ..  960729 -  -5.7   -3.4277   AGGCAAGACCTACAA              CGAGGCC AAG GACCACG              GGTTCATGTACCAGC  55 128
        chrA  957895 ..  957916 -  -3.6  -4.11216   GGGCCACGTGGAAAA           GCCGCTGCC GGTAT GGC-GCGTC           GTCTACGACGATCCG  63 280
CXD78_RS04675 NONE
CXD78_RS04670 NONE
CXD78_RS04665 NONE
CXD78_RS04660  950865 ..  950884 -  -2.8  -3.23216   GCGCACCACGAGCAA            GGCATAGCC TCG GGC-ATGGC            GTCGACGACGCTGAA  46 280
CXD78_RS04650  949132 ..  949153 - -18.7  -3.28712   TTGGTTCGCCGACAA           CCCCCCGGG CTTG CCCGGGGGG            TTGTCGTTTGTGGCG  93 70
CXD78_RS04595  937774 ..  937785 -  -5.8  -3.01712   GGCCGCGCGCCAAGA                TGGC CATC GCCA                 GCCGCTTCCGTACCC  48 303
CXD78_RS04585  935467 ..  935477 -  -4.6   -4.0371   CATGTTCCATACAAA                 GGCA CGG CGCC                 GGCCATGGTGGACCT  63 455
CXD78_RS04555  931825 ..  931853 -  -5.3  -3.87373   GACAGCGCGGATAAA       CCAT-GCGCCCA TCATGG CGGGCGCAATGA        ATTGTCCAAATGTGC  60 141
CXD78_RS04545  929593 ..  929607 -  -3.5  -3.72576   GCGCGCCCGAGCAAA               CCGAC ATCAG GTCGA               AGCGGCCCTGCGCGC  54 348
CXD78_RS04515  923636 ..  923650 -  -3.5  -3.94746   TGAGATTCAAGCAAA              CGCTGC GCGT GC-GCG               CCCTCCGGCACATTC  59 63
CXD78_RS04510 NONE
CXD78_RS04505  920784 ..  920798 -  -4.2  -3.14931   TTCACGTTCGATGAA               GTGGTC AAC GACGAC               GACACCGTGCTCGAC  45 266
CXD78_RS04465 NONE
CXD78_RS04460  913078 ..  913089 -  -5.8  -3.78022   GGTAGAGGGATGAAA                CAGG AAGG CCTG                 GGACCGCTACTGAAG  60 183
CXD78_RS04450 NONE
CXD78_RS04445 NONE
CXD78_RS04440  909478 ..  909493 -  -8.2  -3.53444   TCACCGCGTTCGAAA              GCGCGG ATAT CCACGC               CGAGGCGCGGCGGCT  61 167
CXD78_RS04420 NONE
CXD78_RS04415 NONE
CXD78_RS04410  903969 ..  904005 -  -5.1  -3.02144   GCAGGGGCTGGAATA    CATAGACGGGCTGGT GCTGTCG ACCAACCGGCCGATG    CTGACACTGATGACG  46 127
CXD78_RS04400  899880 ..  899908 -  -4.4   -3.2614   CACCTTGCAGACCAA       CGCGACGCAGATG GTGC CGGCCGCG-CGCG        GCACCGCGGTGGCCT  47 226
CXD78_RS04375  894005 ..  894040 -   -24  -3.73224   TTAGTTGTTACCAAA    TGCGGCGGGCGCGCCC TGCA AGGCGCGCCCGCCGAA     GTGATCGCTCTGAAT 100 47
CXD78_RS04370 NONE
CXD78_RS04365  889444 ..  889495 - -18.2  -2.83677   AATGAATTCAGCACA GCCATTTGATATGGCCCCCG-CAAC CTC GTCGGCGCGAGCCATTTCAAATGGC GCCGATAGGCGGCCT  86 141
CXD78_RS04360  888712 ..  888734 - -20.6  -4.65895   CGCGGGACGGAAAAA           GCCGCCTGGC GGA GCCAGGCGGC           TTAAGGTGCTGCTAA 100 57
CXD78_RS04355  887750 ..  887787 - -12.5  -2.64155   GCTGGCGGAAATCGA   CGCGGCCCTGCATGCCC TGCC GGGCGTGGCGGGCGGCG    CCTGCGCCGTGCTGC  62 290
         mpl NONE
CXD78_RS04280  874873 ..  874888 -  -2.4  -2.64354   GTACATAGTGAGAAT              CCATCG GGCG CGGCGG               CGTCAGGAGCGCCCC  38 72
CXD78_RS04275  872925 ..  872944 -  -2.7  -2.76468   CAGGATCGAAGAGGA            GGAAGCG GAGCGT CGCACCC             GTGCATTTTAGGGCG  40 61
CXD78_RS04270 NONE
CXD78_RS04265  871138 ..  871148 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS04260 NONE
CXD78_RS04255  869205 ..  869228 -  -5.2  -3.28712   CGGCTCGCCCGACAA          TCCGGGCC TGGTGTTC GGCCTGGA           CCGTGGCGGATGCTG  49 374
CXD78_RS04230  865191 ..  865212 -  -9.3   -4.1891   GGCCGGCAAGATAAA           GCCGCTGGC GGTG GCCGGCGAC            AAGCGCCTGAGCGAC  75 332
CXD78_RS04205  858857 ..  858885 -  -8.7  -3.51032   ATTCGTGAAGCACAA        GATCCTGGACGCC ATC GGCGACCTGTATC        TGCTGGGCAAGCCGC  61 307
CXD78_RS04120  837720 ..  837730 -  -4.6  -3.30771   GCACATGCTCTACAA                 CCGC AAT GCGA                 TTTTCACGGGCGGCG  49 481
CXD78_RS04105  835419 ..  835431 -  -7.7  -2.54523   TGAGACGGGAAGGGA                CGTAC GCC GTACG                CCCTTTGGCCCGATC  50 43
        hppD  826220 ..  826240 -   -14  -3.60151   CGCCCGAAATGACAA            GGCCCACC GCGAG GGTGGGCC            TTACTCGCGCCAGGC  78 46
CXD78_RS04045  822326 ..  822338 -  -9.1  -3.18681   GGGCAAGGTCATCAA                CTGGC GCG GCCAG                GGCGAGGTCGTGCTC  59 384
CXD78_RS04035  820601 ..  820614 -  -5.2  -3.21099   CTGCTCTAGCATCAA               CGCG GTAACT CGCG                CGCAGTATTCATGCA  49 450
CXD78_RS04015  818430 ..  818445 -  -6.1  -5.24129   GGCGGGCACAAAAAA              GGCAC TTGGTG GTGCC               GTTTGGTTTTCTGTA  90 220
CXD78_RS04010  817867 ..  817881 -  -4.2  -2.94411   AGGTTGTCAAACAAT               TCCATG ATT CATGGT               CTCCTTAGTTCATGC  44 30
CXD78_RS04005  816311 ..  816328 - -14.1  -6.11644   CGAGGCAAAAAAAAA             CCGGGCC CGAG GGCCCGG              TTCGCGCCGGCCGGC 100 63
CXD78_RS04000 NONE
CXD78_RS03995  813501 ..  813540 - -26.5  -3.05384   GGCGGCCTGATCGAA  CG-GGCGCCGGCCGCCCG GGCTG CGAGCGGCCGGCGCCGCG  GCCTCAGTCGCGCAG 100 29
CXD78_RS03965  809471 ..  809493 -  -6.8  -2.53911   TGAAGCTGGAATTCA           CCGACGACGG CAT CCGCCGGCTG           GCCGAACTGGCATTC  44 243
CXD78_RS03935 NONE
CXD78_RS03930 NONE
CXD78_RS03925  802230 ..  802286 -  -7.8  -2.91264   GCGTCGATCCACATA TGCGGATGCGCACCGGCGCCGGCCGCCC ACA GCGCGCCCAGCGCC-GT-CAGGGCCGCA AGGCGGCGGCGAGTT  52 15
CXD78_RS03920 NONE
CXD78_RS03915  800645 ..  800657 -  -4.7  -3.23637   AACATATCAATTGAA                TCCGG CAC CCGGG                CGTGCAAAATTCGTC  49 56
CXD78_RS03910  798138 ..  798161 -    -3  -3.85698   GCCGCGCTGGACAAA          TGGTTGCAGG CGCG CCCGCAACTG           GCTGCCGCCGGCGCC  56 362
CXD78_RS03880  792588 ..  792606 - -17.4   -4.4078   CGCGGCCAAGCAAAA             CGCCCCGC CAG GCGGGGCG             TTTCGCGACACGGGA 100 48
CXD78_RS03875  792251 ..  792265 -    -7  -3.08371   GACATGGCCAAGACA               GGCCGC CGT GCGCCC               CTCAGTAGTTGTTGC  52 27
CXD78_RS03870  790916 ..  790949 -    -6  -3.34005   AATGAAGCCGGACAA     CGCGTA-GCACCATG ATCCG CACGGCGCGTACTCG     CCTTTCCCGCTTCAT  53 223
CXD78_RS03865 NONE
CXD78_RS03860 NONE
        metF  788156 ..  788166 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS03850  787024 ..  787036 -  -6.2  -3.01924   GAGCGCCGCCGAACA                GGCC TTTCT GGCC                GCGTTCGAGCGCTTC  48 141
CXD78_RS03825 NONE
CXD78_RS03820  779381 ..  779401 -    -4  -3.57561   GGCGAACTGTTCAAA           GT-GCTGGCC GTG GGCC-GCGAC           ATGCCCGAACCCTTG  51 94
CXD78_RS03800  774081 ..  774120 - -15.6  -2.64099   GGCTCCCAGCAGAAT  GGCGCAGCCGGCCAGCGCC AGC AGCGC-GGCCGCCCGCGCG  CGGGCGGCCCGGATA  74 277
CXD78_RS03795  772589 ..  772602 -  -3.7  -2.62263   AGCGCGCCTACAGCA               GCGGC TCGA GCGGC                AGCAGCGAGAACAGC  40 4
CXD78_RS03770  767936 ..  767978 - -11.9  -3.18681   GGCGAAGCGCAGGAA CCCGCGGCCCGGCCGGCCGGC GAC GCC-GCCACCCGTGC-GCAGG TCCAGGCCGAACTGG  64 354
CXD78_RS03695 NONE
CXD78_RS03690  755111 ..  755125 -  -3.4  -3.96327   ACGGTCGAGGAGAAA               GACCGG GCG CAGGCC               GCCATGAATTTCTGC  58 202
CXD78_RS03680 NONE
CXD78_RS03675  751711 ..  751745 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 280
CXD78_RS03655  745720 ..  745757 -  -7.6  -3.03124   GCTGATTCTTGAACA   CGGCTTGGTTGCCCGCC CAGCC GGCCG-CAACCTCGCCG   TTCCGGTTCAGCCAC  53 33
CXD78_RS03650  743072 ..  743108 - -12.9  -2.72144   CGATTCTTTCGAAAC    CCAGGACCGTCCGCCAG CGC CTGGCGGACTGCGCCAG    CCCTTGGGCATCAAA  67 73
CXD78_RS03640  741625 ..  741639 -  -4.9  -2.88249   GATATTGGTCACATA               GCGGC ACTCG GCCAC               GCCAGGCAGCGGTGT  44 173
CXD78_RS03620  738990 ..  739002 -  -2.6  -4.71426   CGGCGATGAACAAAA                GGCC GCCAA GACC                ACCGCCTTCGACTTG  76 434
CXD78_RS03520 NONE
CXD78_RS03515  717135 ..  717145 -  -8.2  -3.53012   CGCGGCCGGCGCAAA                 GGCC GCC GGCC                 GGGCCCATCGATGCG  62 50
CXD78_RS03510 NONE
CXD78_RS03505  714994 ..  715004 -  -6.8  -3.85817   ACGGTGCCGCAGAAA                 CTGG CGG CCAG                 CGCCGCCCCGCATTT  63 189
CXD78_RS03495  712692 ..  712702 -  -2.4  -4.19238   TTTTGAATCGGAAAA                 TGGC CGG GCCG                 CAATGCCCAACGGCG  62 92
        fahA  711237 ..  711264 - -21.4   -4.8622   GCCCGCAAGGAAAAA        GGTGCCTGTCCC GGTT GGGACAGGCACC         TTCGGCAAGCCGGAG 100 108
CXD78_RS03460 NONE
CXD78_RS03455  701271 ..  701301 -  -3.9  -2.57132   CTGCTGCGCGACAAG       GGCGTGCGG GAATTCGTCGAGG CCGCGCGCC       TGCTGCGCCAGCGCG  40 506
CXD78_RS03400 NONE
CXD78_RS03395 NONE
CXD78_RS03390  686512 ..  686530 -  -4.4  -2.62184   CCTCGCCCGAGATCA             TGGAGCGC GTG GTGCACCA             GGTCATCCGCGAGGG  40 362
CXD78_RS03380  683435 ..  683468 -  -5.1  -3.21099   CGGCTTGAGCACGAA     GGTGTTGCCGCAGGC CAGC GCCACCGGGAACATC      CAGCACGGCACCATC  49 495
CXD78_RS03370  680554 ..  680574 -  -3.8  -3.11459   AATACCAGCATGGAA            CTCCCTCG GGTTG CGCGGGCG            GGCCAGGCCCGCCCT  45 46
CXD78_RS03365 NONE
CXD78_RS03360  678399 ..  678452 - -15.3  -3.01712   TGGGCTCCTGGAACA CCATGGCCATGCGCGTGGCGCGCAG TTCGCG CCGC-CGCCGCGCGC-TGGCCGTGA CGATGTCCTCGCCCA  77 291
CXD78_RS03350  675610 ..  675620 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS03345  674360 ..  674376 -  -2.1  -4.62783   GACGTAGCCGAAAAA              CGGCGGA AAT TCATCCG              GAAACTGGCTAAAAG  70 255
CXD78_RS03295  667134 ..  667174 -   -14  -2.80816   TCGCCAGCCACGATA GCCTGGCAGCT-CAGGCGC GAAT GCGCCTCCAGCCCCCAGGC  GCGGTCCAGCAAGGT  71 268
CXD78_RS03270 NONE
CXD78_RS03265 NONE
CXD78_RS03260 NONE
CXD78_RS03255  660293 ..  660320 -  -8.2  -3.78775   TGCGCCACCAGCAAA        GCCGCGGCCGCC CGCT GGCGGGCGAGGA         CGCCGACAAGGTCAT  67 131
CXD78_RS03180 NONE
CXD78_RS03175 NONE
CXD78_RS03170  642768 ..  642782 -  -7.8  -3.30771   GGACATGGCGCAGAA               CAGGCC GTC GACCTG               CGCCATGGCCAGGCC  56 163
CXD78_RS03160 NONE
CXD78_RS03155  639593 ..  639627 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS03140  635293 ..  635315 -  -4.8  -4.67982   TGCCACCGAAGAAAA           CCAGGCCATA CCC CATGACCTGC           CAGACGGATAAGGCC  75 224
CXD78_RS03130  633200 ..  633223 - -13.8  -2.54702   ACAGACGCGAAGGCA          GCTCGCTGGC CACC GCCAGCGCGC           GCCGGTGCGCACCCA  69 511
CXD78_RS03115  630550 ..  630560 -  -8.2  -3.53012   CTGCGGGCGCTGAAA                 CGGC CGT GCCG                 CGTCACCATCCACAC  61 275
        gloB NONE
CXD78_RS03095  627228 ..  627253 -  -3.3  -2.71712   TTGCCTTGCGGAAAG         GCCGCTA TTGTAGGAATTT TAGCGGC          TTGGCGGACGGGCGC  40 64
        fabI  626352 ..  626380 -    -6  -3.78419   GGAGGAAAGATACAA        GGCACCGG AGGTCGAATTTGG CCGGTGCC        AGTCCCCCTACGGGG  62 57
CXD78_RS03085  625096 ..  625125 - -17.9  -2.62616   CGATGGCGTACAGCA       GTGTGCCTGTCCC GGCG GGGACAGGCACCC        TCCCTGCGGGGACAG  85 56
CXD78_RS03075  623370 ..  623403 -  -8.9  -3.53091   ACCTGGCCGGCGAAA     TGCTGC-GCCAGGC CAGCGGC GCCTGGTTGCAGCA     CGTGCCGTATCGAGG  61 460
CXD78_RS03055  619622 ..  619632 -  -4.6  -4.12188   TCATCAGGGCGAAAA                 CCGG TAG CCGA                 TGCCCCACACGGTCT  62 3
CXD78_RS03050  618131 ..  618183 - -14.1  -3.33696   GTGTTCGGCAAGGAA CGCCGGCCGGTGCCGCTCTTGCCGCC GCCG GGCGCCT-GA-CGGCG-CGGCCGGCG GGTCAAGCCTTCGCA  75 28
CXD78_RS03035  613800 ..  613837 - -16.9  -3.18274   TGGATTGGAATGGAA   GCGCCGGCCGCCGGCCCG AAG CGGAG-GGCGGCCGGCGA   CAGCGGATTGTCGGG  84 85
        minC  612827 ..  612845 -  -2.4  -3.86346   TTATGTGCGTACAAA             TCGCGTTA TCG TAAAGCAA             AAAGCGTATGAAGGC  54 87
        minD NONE
        minE  611540 ..  611558 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACTGGTG 100 191
CXD78_RS02970  601207 ..  601226 - -10.6  -5.50499   TTACAGGTAAAAAAA            CCGCTGGC CCTT GCCGGCGG             TTTTTTTATGCGCGG 100 49
        uvrA NONE
CXD78_RS02955 NONE
CXD78_RS02950  593109 ..  593151 - -14.1  -3.07935   ACGGCAGGCACGGAA GTTTGCCGGTGCCAGTCCCC CTGC GGGGACAGGCACCGG-AGTC AGTGGTATTGCACCT  72 24
CXD78_RS02945  591435 ..  591450 -  -2.4  -3.01712   GGCGGGTCGTCAATA              TCGGCA GCCG CGCCGC               GCTGGGCAAGCCCGG  41 437
CXD78_RS02930  588323 ..  588357 -  -5.4  -3.53811   GGGACTGCGGGCAAA     GAGCCGGGCGGCGGAC ATG GTCAGGCGGCAGGCGC     GGCGGCGAGCAAGGC  54 11
CXD78_RS02925  587080 ..  587104 -  -9.1  -3.01712   GCGCCGGCGGCAAGA          CCGACCCGCTG GCG CTGCGCGCCGG          CGACCTGTCCGAAGC  55 524
CXD78_RS02915 NONE
CXD78_RS02910  584386 ..  584403 -  -2.6  -3.05463   ACCGGCTGGATGGAA             GGCTGT CAGTGT ACCGCC              AACGCCGCGCCCGCG  41 52
        pdxH NONE
CXD78_RS02900 NONE
CXD78_RS02895 NONE
        purU  581103 ..  581117 -  -5.6  -3.05384   CGTCCCTGCAGGCAA               CGGCCT TGC AGGCGG               CCTTGCGCCATTTCG  46 65
CXD78_RS02865  575244 ..  575268 - -12.8  -3.65902   GCGATGCCAGTGAAA          CGCGACGCGC CGGAT GCGCGTGGCG          CGAAACTGCACTTGC  77 90
        apaG  568966 ..  568996 - -10.3  -4.13945   ATGCGGATCGGAAAA       TCACCGTGCCGGG AGGAG CCCGGCTCAGTGC       AGTGTACGCGGCATG  78 19
CXD78_RS02825 NONE
CXD78_RS02820  566484 ..  566508 -  -3.4  -3.08032   TGCTCCTGAAAACGA         CGGCC-CGCTC AATT GCGCGAGGCCC          CTTCGATGAGTTGCC  44 9
CXD78_RS02815 NONE
CXD78_RS02810  564445 ..  564479 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 207
CXD78_RS02790  560963 ..  560977 - -11.4  -3.57144   GTGCGCACGCGCAAA               CAGGGC GAG GCCCTG               GCGCTGGCCACCGTG  71 267
CXD78_RS02780  558559 ..  558578 - -16.4  -3.75153   GCGCGCCAATGGAAA            CGCCGCGC ATGC GCGCGGCG             TCGGCAATCGGGCGG  88 81
CXD78_RS02760  555185 ..  555197 -  -3.3  -3.04792   TCACGATGGTTAATA                TCGCT ACG AGCGC                TTGCGCAGCATCAAT  42 16
CXD78_RS02755  554199 ..  554219 - -14.7  -2.52676   GATCTTGCTAACGGA            CGCCCGCCA CCA TGGCGGACG            CCGAAAATTTGGGAT  71 40
CXD78_RS02750 NONE
CXD78_RS02745 NONE
CXD78_RS02740 NONE
CXD78_RS02735  551059 ..  551097 - -12.2  -3.53012   GCTTTCCTGTTGAAA   CGGCTTGGCGGGTTCAGC CGG GCTGTCCCCGCCCTACCG   TAGGATGGGCGGCAC  74 67
CXD78_RS02730 NONE
        atpD NONE
CXD78_RS02720  548200 ..  548227 - -18.6  -2.91924   GGATGCGCCAGAAAC        GACAAAGGCGAC CGAA GTCGCCTTTGTC         TGCCTGACGCGGCGG  89 58
CXD78_RS02715  547115 ..  547144 -  -2.2  -3.09581   CAAAGGGGCAACAGA       CACGACTATCC TTGGTGATC GGA-AGCCGTG       ATTTTACTGCCCTGG  42 74
CXD78_RS02710  545832 ..  545849 -  -4.1  -3.60048   CTTTGGGGAAAAAAC             GCTAACA AGGG TGTGAGC              TTTCAGGGTCGTGCC  51 217
CXD78_RS02705  543604 ..  543630 -  -5.7  -2.62184   TGTTCGGTCAGAGTA        CGGGTTCGAGCG CCGG CGC-CGGCCCCG         CTCAGATCTCCAGCG  44 27
CXD78_RS02700  541475 ..  541485 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS02695  540366 ..  540407 -  -8.5  -3.14132   CTGTCCCTGCACCAA GGGCGTGGGTGCCTGTCCC CGTG GGGACAGGCACCTTGTTCC  CCCCTCCGCAACGCC  56 89
CXD78_RS02645  529245 ..  529257 -  -9.1  -3.33696   GCTGCGCGTAAGCAA                GCGCA TGC TGCGC                CAGGCCGACCGCGCC  59 219
CXD78_RS02630  526848 ..  526862 -  -2.7  -4.21607   TCGAGGGAATATAAA               GTGGG ATGGG CCCGC               GCGGCGTCAGATGCG  63 32
CXD78_RS02625  525666 ..  525680 -  -3.4  -3.78934   CGGCGCGCACAACAA               CGCGGC TGC GCTACG               CGTACGCCTTGAGGG  56 21
CXD78_RS02610  522230 ..  522243 -  -2.3  -3.07935   ATTCTATCCATTGAA               CTACG GGCG CGAAG                AGGCGACATTGTACC  41 184
CXD78_RS02605  522164 ..  522179 -  -4.6  -3.53224   TAGGGCCTTGGGAAA              CTGGCG CGCC CGACAG               GAATCGAACCTGTAT  52 11
CXD78_RS02600  521066 ..  521076 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS02595  519897 ..  519919 -  -5.5  -3.15579   GCAACCGGGGAGCAA          GGCGCACGCC GGCC GACGC-CGCC           ACGGCGCATGGGCAG  49 168
CXD78_RS02590 NONE
CXD78_RS02585 NONE
CXD78_RS02580  516348 ..  516384 - -10.9  -3.15544   TTCGACGCCGACGAA   GCGCGGCGCA-TCG-GC TTCGT GCGCGACTGCGCCGCCC   AGGCGCAGTGGCCCG  64 217
CXD78_RS02560  512948 ..  513000 - -27.1  -3.02144   CCAGGCGCTCGAAGA CGCCGCCTGAAGCGCGGCGGCCGC CAGCCC GCG-CCGCCGTGCTTCAGCCGGCG TTGGGCGCGGCCCAG 100 16
CXD78_RS02545 NONE
CXD78_RS02540  508389 ..  508418 - -11.3  -2.62263   ACGTCGCCGACACCA       GCGCCATCCAGCG CACC CGCTGGCCGGCGT        CGGGAAACAGGTCCG  59 509
CXD78_RS02530  506071 ..  506123 -  -9.2  -3.04501   ATCAATTCCGCAAGA GCCTCATGCAG--GCCGCCGCGCGCG GCGTG CGCGTGCGGCTGCTACTGCA-G-GGC AAGCCCGAATACCGC  55 403
CXD78_RS02475 NONE
CXD78_RS02470 NONE
        lptC NONE
        lptA NONE
        lptB  490642 ..  490657 -  -3.2  -3.66288   TATTGGCCAATACAA              GTTGCG CTAG CGCAAG               ATTGTGTACGTTTGA  53 108
CXD78_RS02445 NONE
CXD78_RS02440  488374 ..  488386 -  -4.7  -2.71144   CAGCTGGGGCAACCA                GGCCG GCG CGGTC                ACGCCGCTGGACGTG  43 127
        rapZ NONE
CXD78_RS02420  484353 ..  484363 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS02415  482899 ..  482933 -   -10  -3.41229   ATAGTTCGAGCAGAA    CCTGGCGCGC-TCGC TCAGCG GCGAGGCGCAGCAGG     ACCCGGCGCAACCGG  65 441
CXD78_RS02355  471913 ..  471934 -  -7.3  -4.61873   GCGCACAAATGAAAA           TGCCCAG TGCAAGGG CTGGGCA            TCGAATTCTTGGTGG  79 35
CXD78_RS02310 NONE
CXD78_RS02305  456397 ..  456452 -  -7.4  -4.18197   AGGCGTGATCGAAAA GCA-GGTGGCCATCGTCGCGCCGGCCA AGG TGGGCAGCACGCTGACGGCCATCGTGG AAATCACGCTGGACG  73 304
        glmS  453896 ..  453934 -  -8.1  -2.56715   ACCTGGACGAATGCA  CCATCGGGCGCGACAAGGC CGT GCAGCG-CGCG-CCGATGG  ATATCGCCCGCCTGC  48 330
CXD78_RS02275 NONE
CXD78_RS02270  447642 ..  447696 - -20.2  -2.50779   ATGACAAGCCAACAG CATGCCGGCG-GC--GCGTCGCGGCAA GGCC TTGCCGCGACGCATGCGCGCCAGCCTG GGCCGCCTACTGTCA  95 38
CXD78_RS02265  446182 ..  446193 -  -7.2  -3.51934   GCCCCTGCAGAAAGA                GCGC TGGA GCGC                 GGCGGTCGATGTGGT  58 449
CXD78_RS02255 NONE
CXD78_RS02250 NONE
CXD78_RS02245 NONE
        argE  441504 ..  441553 -    -2  -3.50133   TAGTTGTAGAAAAAG CGCCACCGTCATGGA--CCGGACC CGAA AGCCCGGCGTTCGTGACGGGGGGG TACATCACCACTACC  48 74
CXD78_RS02235  440419 ..  440443 -   -20   -3.3514   ACCGACACGGCACAA          CGGGCGCCCG GGCCG CGGGCGCCCG          CCGCGATCAGTCGAT 100 32
CXD78_RS02230  439085 ..  439102 -  -5.5  -2.71712   GCCTCTCGCTCAAAG             TCCCAGG ATGG CCTTGGA              AATGATGTTCTTCTG  45 2
CXD78_RS02225  437774 ..  437793 -  -3.4  -3.65812   CCCCGCCGAACACAA            CGTCGGCC ACCT GTACGACG             CCAAGCCCGAACTGA  51 167
CXD78_RS02210  433850 ..  433860 -  -8.2  -3.35813   GGTGATGGGAACGAA                 GCGC TCG GCGC                 CGAAGAAGTTGCCGA  60 176
CXD78_RS02200 NONE
CXD78_RS02195  432120 ..  432154 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS02180  428129 ..  428146 -  -3.3  -3.08464   CTACCACTGAGCTAA             CCACCCC GAAA GAGGCGA              AATTCTAGCACGAAA  44 73
CXD78_RS02175  428017 ..  428051 - -19.5  -3.54489   GGAAGCGGAAATGAA    GAAGGGCCGGT-GCTT TTGC AAGCGACCGGCCCTTC     TGGGATGCTGGTGGG 100 34
CXD78_RS02170  427503 ..  427529 - -11.5  -2.78384   CGTTGTTCGACGATA         GCCCAGGCCTG GCGCA CAGGCCCGGGG         ATGCGCACAGACAGC  62 101
CXD78_RS02165  426053 ..  426098 -  -7.4  -3.86822   GAAGCCTTCGAGAAA CTGGGCGCGCCGCC--CCTGCC CGAG GGCAGGTAGGCGGCTGGCGCCG GGCTAGAAGAAGCTC  66 28
CXD78_RS02140 NONE
CXD78_RS02135 NONE
CXD78_RS02125 NONE
CXD78_RS02120  416966 ..  417003 - -14.7  -3.15699   ACGCATCTATGAAGA   TGCCGTGGCCGACTTCG TACG CGACGCCGGCCGCGGCT    ATGCCGGCCGCCAGG  77 87
CXD78_RS02095  413394 ..  413421 -  -3.9  -2.78996   CATCCTGATCGAAAT        GGGCAGGCCCG TCTGCG CGCGCCGTCCC         GCGAACCGCCGCTGC  41 41
CXD78_RS02090  412315 ..  412353 -   -13  -3.52093   ATATTGGAACCATAA   TCCGCGGCACCCGGCCCA TAT TGCATCCGGCGCCGCGGA   TTGCGGGCGGGCCAT  77 53
CXD78_RS02085 NONE
CXD78_RS02080 NONE
CXD78_RS02075  408608 ..  408618 -  -5.4  -2.94924   CCTGGATGGAGAAAG                 CTCT ACC AGAG                 GCTCATTCCTTGTAC  47 28
CXD78_RS02070 NONE
CXD78_RS02065  405919 ..  405947 - -11.7  -3.81755   ACGCGTGAAACAGAA        GCAGGGTGTTCAC GAT GTGAACACCCAGG        GACGGGCGCCGGCTT  79 59
CXD78_RS02060 NONE
CXD78_RS02055 NONE
CXD78_RS02050  402633 ..  402649 -  -5.1  -3.78034   CATCGACATCAAGAA              GCTGG GACGTAT CCAGC              GCCCTGGCCACCGGG  60 494
CXD78_RS02035  399696 ..  399720 -  -9.2  -3.64822   ACCGGTGTAGCCAAA         GCGGGCCAGCG TCTG CGC-GGCCAGC          CGCGCGCGCGGGTCG  68 347
CXD78_RS02025 NONE
CXD78_RS02020 NONE
CXD78_RS02015  395164 ..  395220 -  -6.6  -3.14051   TTATTTCCAGGAACA CCCG--CATCCCACCGAAGGCACGAT ACGCACG ACCGCGCCGCCGGTCGAATGGTCGGG CACGCCCGGCGGGTA  50 237
CXD78_RS01995  391772 ..  391782 -  -3.2  -2.78816   TCATCGGCCATGACA                 CATC GCT GACG                 GGGTTTGGCGGCGGG  40 151
CXD78_RS01980 NONE
CXD78_RS01975 NONE
CXD78_RS01970 NONE
CXD78_RS01965  387550 ..  387562 -  -3.3   -3.6968   CGAGAACCCCAAGAA                GCTGA AGT TCCGC                GAACTGGAAGCCGCC  55 436
        argB NONE
CXD78_RS01950 NONE
        slmA NONE
CXD78_RS01940 NONE
CXD78_RS01935 NONE
        gatC NONE
        gatA NONE
        gatB  372157 ..  372175 - -10.2  -2.62515   AATCGGTCGAGATCA             TCCGCGCC GCC GGCGCCGA             GCCCGCCGCGGTGCT  55 359
         xth  370496 ..  370507 -  -7.2  -4.25104   TTCGTCGGACGAAAA                GCCG GAAT CGGC                 CGCAAAACCAGTGCT  72 313
CXD78_RS01880  368712 ..  368741 -   -18  -3.93262   CCCAACAAATGGAAA       TGCCGCTGACCA TCGTGC TGGTCAGCGGCA        TGATCACCGGGTGCG 100 313
CXD78_RS01865  366053 ..  366096 - -11.6  -3.15544   GGTCAGGCGCATCAA GACCGGCG-CCGGCGCGCA TGCGTTC CGCGCGCAGGGCGACGGCC GCCATCTGTTCGTCA  64 284
CXD78_RS01825 NONE
CXD78_RS01820  356973 ..  356983 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 73
CXD78_RS01815  355752 ..  355796 -    -4  -2.78463   AGTGGCGCGAGCAGA CGCTGTCCGAAGCGGGCGAC CTGGT GCTGGCCGCGCCGGATACCG GCCTGGACGCCAAAG  40 198
CXD78_RS01790  353458 ..  353492 -    -4   -4.9792   CATTTTAGATAAAAA     CCGCGCGCATGCAACC GGT GCCTGCCGGCGCGCCA     GCGCCGACGGCCCGC  79 115
CXD78_RS01785 NONE
CXD78_RS01780  351838 ..  351851 -  -2.3  -2.64616   TTCCCATCGAGAGCA               GGCAC GAGC GTGCT                TGTGCTGTCGATGAC  38 120
CXD78_RS01775 NONE
CXD78_RS01770 NONE
CXD78_RS01765  347166 ..  347218 - -16.2  -3.05844   TCGGCCAGCGGAATA TGCACCGCGCCGCTGGCGGCGG CGAGAATGC CCACCGCCAGCAGGGCAGCGCC CAGCGCCAGCAGCAG  79 60
CXD78_RS01760 NONE
CXD78_RS01755  345448 ..  345473 - -11.9  -3.57144   TGCGCCACCTCGAAA         CCGGCGC-CTGA GGT TCAGCGCGCCAG         CACCAGCAGGCGGCC  72 14
CXD78_RS01745 NONE
        alkB  343432 ..  343448 -  -9.3  -2.52464   TTGCGGCCGAATTCA              GGCGCCG GCG CGGCGCA              GCGTGAAGTTGATGC  54 6
CXD78_RS01735  342817 ..  342827 -  -8.2  -3.53012   TGCCGGCGTTGCAAA                 CGGC TCA GCCG                 GCCTCGCGCAACAGC  62 19
CXD78_RS01730  341246 ..  341263 - -12.7  -3.06915   AGGGACGCTACGCAA             GCCGGCT GGTC AGCCGGC              CCGAGCATCGCGACG  66 346
CXD78_RS01705 NONE
CXD78_RS01700  337111 ..  337125 -  -8.5  -2.56596   GTCGGGAGCAATCTA               CGCGG GTCGG CCGCG               CGCTGTCTGTTTACT  52 64
CXD78_RS01695 NONE
CXD78_RS01690 NONE
CXD78_RS01685 NONE
CXD78_RS01680 NONE
CXD78_RS01675  332182 ..  332216 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS01665 NONE
        lptG NONE
CXD78_RS01655  327982 ..  327994 -  -4.7  -3.01712   CGTTCGTGGCCAAGA                GCGAG ATC CGCGC                CTGGCCGGTCATCGG  46 510
CXD78_RS01620 NONE
CXD78_RS01615 NONE
CXD78_RS01610  321219 ..  321257 - -10.2  -5.80951   ATCCAAAACAAAAAA   GTGAAGCCCATCGGATCG TAA CAATCCGATGGGCCGGGC   CCTGCCCGTCGCGGC 100 45
CXD78_RS01605  318909 ..  318921 -  -2.7  -2.80074   GTTTTTACAAGAGGA                TCCAT GAC ATGAA                AATTCTGCAACCGCC  39 516
CXD78_RS01540 NONE
CXD78_RS01535  305077 ..  305093 -  -9.3   -2.7185   ATCATGGTGGAATTA              TGCGCCG GGC CGGCGCC              GGCGTGGCCGGCCTG  55 41
CXD78_RS01530  303868 ..  303902 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD78_RS01520  302713 ..  302728 - -11.8   -5.4505   TTGGCCAACAAAAAA              GCCGCC CGGA GGCGGC               TGGAAGGTCGGCTTC 100 42
CXD78_RS01515 NONE
CXD78_RS01510  300766 ..  300789 -  -3.1  -3.51934   CCTGGCTGAGAAACA          TCG-AGCCGA ACTTG CCGGCCCCGA          TCAACGCCACCCGCA  49 219
CXD78_RS01495 NONE
CXD78_RS01480  293180 ..  293210 -  -8.8  -2.66316   GCGGCGAGCAGATCA       CCGCCGTGGCGCTG GAC CTGGGCTACGGCAG       CCCGGGCGCCTTCAC  51 151
CXD78_RS01470 NONE
CXD78_RS01465 NONE
CXD78_RS01460 NONE
CXD78_RS01455  288028 ..  288038 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS01450  286673 ..  286701 -    -6  -3.08679   CCGCGTGATGGAAGA       CATCGTGCGCACGG GCG CCGTGCGG-CG-TG       GCTGGTTCGGCATCG  48 348
CXD78_RS01440  284946 ..  284972 -  -7.9  -3.23853   CCGCCGCAAGGAAGA        GGCCGCGCCGGA AGCG CCCGCCGC-GCC         GCCGGAAGATGTCAC  53 114
        petA NONE
CXD78_RS01425 NONE
CXD78_RS01420  281347 ..  281378 - -18.8  -3.94846   GTATGAAAAGCGAAA      GGCCAGCGCC-GCCA AAT TAGCAGGCGCTGGCC      CCGATTGCCAGGCGG 100 123
CXD78_RS01415 NONE
CXD78_RS01410  280175 ..  280199 - -17.2  -3.16191   CTACACCGGCATGAA          CGCAAGCGGC GCATG GCCGCTTGCG          AGGGACTGCATTGTA  84 73
CXD78_RS01405  280055 ..  280075 - -13.3  -5.07011   TACATAAACGAAAAA            GCCGTCTCC AGA GGAAACGGC            CTAGATCGTTGATTT 100 44
CXD78_RS01390 NONE
CXD78_RS01385  277805 ..  277844 -  -8.6  -3.02144   TCAGCGCCGCCAACA  CCATGCGCCTGG-ACAACA TGG TGCTGTACCAGACGCCCAG  CCTGGATGGTTTCAA  55 372
CXD78_RS01315 NONE
CXD78_RS01310  263692 ..  263742 - -13.4  -2.53876   TCCCAGCGGAATCCA GGGCATCGTGATCGG-GCCGCACGGC CTG GCCG-GCGGCGCCGATC-CG-CGCCG CGAAGGCCTGGCGCT  67 58
CXD78_RS01300  260971 ..  260986 - -11.8  -3.57144   CCGTGCACGCCGAAA              GCGCCC CGCG GGGCGC               TTTTTTCTTGCGCGC  72 46
CXD78_RS01290  258814 ..  258836 - -12.7  -3.24747   GGGCGACATGACCAA          CGCGCGCCGC TAGA GCGGCGC-CG           GGCGCGTCAGTTGGG  71 32
CXD78_RS01280 NONE
CXD78_RS01275  255292 ..  255329 -    -9  -3.35679   CGCGGGCAGTGAGAA   GCGGGCGCCCGTCCCC GTTGGG GAGGAGCGACACCCGC    GGCAAGGGTGCCTGT  63 127
        mutL NONE
        miaA  251702 ..  251731 - -23.7  -2.78816   TCATGGCGTATGACA       GGGTGCCTGTCCC CGCG GGGACAGGCACCC        TTGCTCAGTCGGGCA 100 30
CXD78_RS01250 NONE
CXD78_RS01245 NONE
        pcnB NONE
CXD78_RS01235  246911 ..  246924 -  -4.5  -3.38326   CAGAAGCTGAACGAA               GCGTCG GCG CG-CGC               GCTGAACACGCCGGC  49 189
CXD78_RS01215  241338 ..  241369 - -15.9  -3.76413   TTGCAAAATGGGAAA      GGCATCCGGTGCG TGCGAG CGCACCGGACACC       ATTGGACGGCCTGCG  90 42
CXD78_RS01210  240357 ..  240367 -  -2.4  -3.29144   CGACCTGGCGCACAA                 GGAC CTG GGCC                 TGGCGCTCGAACTGG  44 257
CXD78_RS01190  237375 ..  237385 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS01185  236254 ..  236268 - -11.4  -2.91274   CTCAGCCGAACGACA               GGCTGC CTT GCAGCC               CTTCATTGACCGCTA  61 128
        thiC  230321 ..  230335 -  -8.5  -3.02263   ACACCTCGGTCAAGA               CCGCC TACAC GGCGG               CCTGACCCGCATGGC  55 72
CXD78_RS01140 NONE
CXD78_RS01135  225084 ..  225133 -  -9.8  -2.82015   GCCATAGGCAGCATA TCGGCGACGGCGGCGCC--GCGGA TTTT CCCGCTTGGCGCGGCCGACGCGGC GCCGGTAGGCATCGC  56 396
CXD78_RS01125  223522 ..  223534 -  -2.6  -3.55444   GCGGCATGTGCGAAA                CCGA TTTTT CCGG                GTACCCGGACTGCCG  50 368
CXD78_RS01115  219865 ..  219893 -  -2.3  -4.92756   ATGATCAAAAACAAA        TCATCCTGGGACG CAG CGCCTCAAAATGT        TGGGAGGCTTCCGGG  76 237
CXD78_RS01110  216601 ..  216630 - -23.7  -2.78816   TCATGGCGCATGACA       GAGCGCCTGTCCC CGTG GGGACAGGCGCTC        TTGCCGCTGGTGTCG 100 111
CXD78_RS01105 NONE
CXD78_RS01100  213853 ..  213866 -  -3.7  -3.33696   GGGCTCCGTAAGGAA               GGCGC GGCG GCGTC                AGTGGGTCAGGTAAC  47 24
CXD78_RS01095  213039 ..  213072 - -12.4  -2.82519   CGAGCACATCAACCA    GGCGCTGCGGCGCCGC TGAG GCGGCGC-GC-GCGCG     ATGCGCGAGCAGGCG  66 61
CXD78_RS01085 NONE
CXD78_RS01080  210714 ..  210734 - -19.7  -4.11216   CTTCGATCGGTAAAA            GCCCCGGCC GCC GGCCGGGGC            GCAATGGGCGTTCAG 100 37
        catC NONE
CXD78_RS01070 NONE
        pcaD NONE
CXD78_RS01060  207924 ..  207936 -  -4.7  -3.73068   GGCCGAATGCAACAA                GTCGG CAA CCGGC                AAGACCGGCGACGAG  58 310
CXD78_RS01030  202852 ..  202862 -  -8.2  -3.28712   GGCGCGGGTGGACAA                 CGCC TAT GGCG                 ACCGCAACCTGGTGT  59 217
CXD78_RS00980 NONE
CXD78_RS00975 NONE
CXD78_RS00970  189324 ..  189336 -  -4.8  -3.41051   GCAGTTCGACGAGAA                GTCG TTCGT CGAC                TTCAAGGGCGATGTC  52 372
CXD78_RS00945  181959 ..  181988 - -13.5   -4.2828   GCTCAGGCATGAAAA       CGCGCCGCCA-GGC CGT GCCACGGCGGCGCT       GCAGGGGCCGGCGGG  91 50
CXD78_RS00940  179650 ..  179676 - -20.8  -3.55444   GCCGCAGGCCTGAAA         CGGCCGGCCCGC GTG GCGGGCCGGCGG         CGGCGCGCTCAGCGC 100 34
         bfr  174610 ..  174631 - -17.3  -3.75629   CAGCCGCAATGCAAA           GGGCGCACC GCAT GGTGCGCCC            TTTTTCATGCCATGG  91 63
CXD78_RS00880 NONE
CXD78_RS00875  167978 ..  168033 -  -6.7  -3.15544   CGCTATCCGCACGAA TTCTCCGGCGGCCAGCGCCAGCGC-AT CTGC ATCGCGCGCGCGCTGGCCACCCG-GCC GCGCTTCCTGATCTG  52 330
CXD78_RS00865  165585 ..  165642 -  -2.7  -4.11484   CTGAACTCTTCAAAA CCATGGAAGCGGTGCGCTGGAATAT-GG CGT CCGATATCCCATGGGACGACTTCGACGG CAGCAAGCTGTCGGA  59 327
        phoB NONE
        phoR NONE
CXD78_RS00825 NONE
CXD78_RS00820  156673 ..  156700 -  -2.7  -2.66316   CGGCCGACGATAGCA       GGGCG--GGACTG ACCT CAGTCTGTCGCCC        GGATTACGCGTTTGT  39 12
CXD78_RS00815  156037 ..  156049 -  -7.7  -3.78934   TTGCCTGTACAACAA                GGGTT GAA AACCC                CCCCCCCATTGTGGA  66 96
CXD78_RS00810  154544 ..  154559 -  -3.2  -3.73775   TCGAGCTCGACGAAA              TCGACG CCAT CGCCAA               CCTGGTGCGCCACGG  55 282
CXD78_RS00800 NONE
        pxpB NONE
CXD78_RS00790  151134 ..  151156 -    -9  -3.01712   TCCGGTCGGCGAAGA           CTTCCTGCGC CGC GCGCAGGCCG           ATGGCGCGGGCAGCG  57 495
CXD78_RS00775  148889 ..  148901 -  -5.5  -3.01712   GCGGCGCCGCCAATA                CCGCA TCC TGCGA                TGATGACTCGCATAG  47 111
CXD78_RS00765 NONE
CXD78_RS00760 NONE
CXD78_RS00755  144575 ..  144616 -  -9.2  -3.72027   AGCGCCTACGAACAA TGGGCGGGCGACGC-CGGC GACGA GCCGGGCGACGACCGCCTG CGCGTCGCGTAGGCC  68 125
        ilvA  137211 ..  137221 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 380
CXD78_RS00725 NONE
CXD78_RS00715  133783 ..  133823 -  -8.8  -3.05715   AATGCCGTTACCGAA CGCCAAGTCCGCGCCTGCG TGGA CGCGGGCGCGG-CTACGCT  GGGCGATCTCCAGTT  55 264
CXD78_RS00700  131505 ..  131524 - -16.4  -3.85165   CAGCGCAAATGTAAA            CGGCGCGC CAGG GCGCGCCG             TCAGGCCGGTCCGGG  91 55
        leuA  129069 ..  129097 - -16.7   -3.1372   GACCGCCGAGCAATA        CCTGGCCCACCTG GCG CAGGCGGGGCAGG        CGCGCGCGAAAGTGG  80 355
CXD78_RS00680 NONE
CXD78_RS00675  125744 ..  125788 - -17.8  -3.19653   CCAGAAGGCCAGGAA CAGCGCCGCGGCCGGC-GCAG CGAA CAACAGCCATCCGCGGCGCTG CATATCAATTCACCT  86 30
CXD78_RS00665 NONE
CXD78_RS00660  123176 ..  123186 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD78_RS00655  122098 ..  122126 -  -2.9  -3.30701   TTCCAGGAAATTCAA        TGGGCCGCCAGCA CCA CGCTGACGGACTG        GCCGGTCTGATAGGT  46 71
CXD78_RS00650  121222 ..  121243 - -10.8  -2.84325   GCGGTGCAAACATGA           CGCCGCCA TGTCAG CGGCGGCG            CTTGTTTCACTCGTC  61 32
CXD78_RS00645  120112 ..  120126 - -12.8  -3.48276   CGGTGGTTCACAGAA               CCGCCG CGT CGGCGG               CGAAGAAATGCTGTC  73 3
CXD78_RS00640 NONE
CXD78_RS00635 NONE
CXD78_RS00630  116911 ..  116929 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACAGGTG 100 182
CXD78_RS00610 NONE
CXD78_RS00605  112261 ..  112275 -    -7  -2.90714   TTAAAGCGTTACAGA               CTGCGG ATG CCGCGG               GGAAGTTCCATGGCG  50 43
CXD78_RS00600  111548 ..  111567 - -11.4  -4.08144   CCCATCAACGACAAA            GCCTCCGC ATGG ACGGAGGC             TTTGTGGCGTCGGGG  82 60
CXD78_RS00585 NONE
        rfbB NONE
        rfbD NONE
        rfbC  105870 ..  105905 - -16.1  -3.14878   GGCGTCAACTGAAGA    CGCGCGGGCCGCTAC GCATAG GTATCGGCCCGCGCC     AGCGCCACGCCCTGG  81 1
CXD78_RS00510 NONE
CXD78_RS00505 NONE
CXD78_RS00500   94077 ..   94110 -  -9.3  -2.75481   GTTCAATTTCAAGGA     TGCCGCCCGGGACGC CATT GCGGCGGGGGCGGCG      CTGCGTGCGCCCGAC  52 204
CXD78_RS00485 NONE
CXD78_RS00480 NONE
CXD78_RS00475 NONE
CXD78_RS00470 NONE
CXD78_RS00465   86735 ..   86750 -  -7.5  -2.62515   AATTCTCGCAGATTA              GCGCG AGGCTG CGCGC               CGTGGCGTGACAGAT  50 7
CXD78_RS00460 NONE
CXD78_RS00455   84787 ..   84810 -  -9.4  -3.53012   GCGTTGGTGCGCAAA          GGCGCGACAC TGCC GGGGCGCGCC           ATTGAGTGCGAGTCA  64 107
CXD78_RS00450 NONE
CXD78_RS00445   82754 ..   82775 -  -7.9  -4.62302   GAAGAGCCGGAAAAA           CCCAGTGCG ACGG CGCACAAGG            CCAGTGGCGTGGATA  81 73
CXD78_RS00435   79481 ..   79495 - -11.4  -2.91274   CTCAGCCGAACGACA               GGCTGC CTT GCAGCC               CTTCATTGACCGCTA  61 131
CXD78_RS00425   77326 ..   77352 -  -8.7  -4.07568   CTCGCTGCTGGAAAA         GCTGCCCGC GCAGCTCCA GCAGGCAGC         CGGCCAGCTGCAGGG  72 308
CXD78_RS00415 NONE
CXD78_RS00410 NONE
        ampD NONE
CXD78_RS00400   73382 ..   73413 - -10.1  -3.25823   GGTGCTGGAGATCAA      CCCGGACCACGCGC TGGTC GCGCG-GATCCGCG      ATGCCAGCGATGCGG  63 318
CXD78_RS00390   71199 ..   71221 - -12.6  -2.82742   ACGCTTTTATAACGA           CCGGCGCCCG CAT CAGGCGCTGG           GCATGAAGACTCCGG  66 195
CXD78_RS00365   66991 ..   67001 -  -8.2  -2.54655   AAAAGGCCCAACCCA                 GGGG TAC CCCC                 AAATTGATGATCCAT  52 507
CXD78_RS00355 NONE
CXD78_RS00350   64500 ..   64513 -  -5.3   -3.5323   AACTTCAAACAAAAC               TATCG CACT CGATA                TCAAGCGCATCGATC  54 1
CXD78_RS00345 NONE
CXD78_RS00340   63284 ..   63310 -  -4.3  -2.78384   GCGCGGCCCATGATA        TCCGTGCCC-CC ACCG GGTGGGAACGGT         ACGACCAGTGTAATA  43 189
CXD78_RS00335   62061 ..   62083 -  -8.4  -4.09685   GGTGATGGCGTAAAA           GGGCATAGCG ATC CGCTATATCC           AGCCTGGCAAGCCAA  72 385
CXD78_RS00325   60987 ..   60998 -    -3  -5.30348   ACTTAACAATAAAAA                TTCA AATA TGAA                 TGTTTAATTTAGTTA  89 105
CXD78_RS00320 NONE
CXD78_RS00315   58900 ..   58930 -  -5.3  -3.73068   GGTCGAAGCCAACAA       CCCCACCACCAGC ATCCA GCTGGTCGTGGCC       GGCATAGGGCTGGGT  57 344
CXD78_RS00305 NONE
CXD78_RS00300 NONE
CXD78_RS00295 NONE
CXD78_RS00290 NONE
CXD78_RS00285 NONE
CXD78_RS00280   53379 ..   53401 -  -4.8  -3.76482   CGACACCAGCAAGAA           CCTGGTCG AGGAAGG CGACAAGG           GCAAGCGCTACGCGC  58 247
CXD78_RS00235   45237 ..   45272 -  -2.4  -4.16842   TTCATGCTCAAGAAA    CGCGTGCGGATCCTG TGGCAGG CCGGCTGCGC-CGCG    CTGCTGCTGGCCGCC  61 474
CXD78_RS00215   43266 ..   43306 - -20.6  -3.53012   GTCTTGGCCGTCAAA CCG-CAGTGTGCCTGTCCC AGCG GGGACAGGCACACTGGCCG  CAGTTGGGACAGGCA 100 66
CXD78_RS00175   35576 ..   35594 - -13.1  -2.84298   GACAGTTCACAACTA             GCGCGGC GCCTG GCCGCGC             GGCAGCCAGTGCCAG  69 4
CXD78_RS00155   30988 ..   31001 -  -3.7  -2.70932   TCTCGCCGCGAATCA               TCGCC TGGC GGCGG                ATCCGGCCAGCATGG  41 94
CXD78_RS00150 NONE
CXD78_RS00145 NONE
CXD78_RS00140 NONE
CXD78_RS00135   28287 ..   28297 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 43
CXD78_RS00130   26859 ..   26875 -  -5.8  -3.53012   TGCGCTGCCTGCAAA             GC-GGCG CGGA CGCCTGC              GTGCCCCTGCCGGCC  55 433
CXD78_RS00115   24044 ..   24068 -  -7.7  -2.97021   TCGGCAAAGATGATA          TCCAGGCCCAC TGC GCGGGCCTCGC          CCAGCTTGTCCAGCA  53 310
CXD78_RS00100   20076 ..   20099 - -16.8  -5.50499   CGACAGCCAAAAAAA          GGCCGCTGAT GCAT ATCAGCGGCC           TTTTGCTTGACGCGG 100 53
