locus-tag class description RD03_RS00005 PF13932 GidA associated domain RD03_RS00005 PF01134 Glucose inhibited division protein A RD03_RS00010 PF02527 rRNA small subunit methyltransferase G RD03_RS00015 PF13614 AAA domain RD03_RS00025 PF02195 ParB-like nuclease domain RD03_RS00025 PF17762 HTH domain found in ParB protein RD03_RS00030 PF17763 Glutaminase/Asparaginase C-terminal domain RD03_RS00030 PF00710 Asparaginase, N-terminal RD03_RS00035 PF17763 Glutaminase/Asparaginase C-terminal domain RD03_RS00035 PF00710 Asparaginase, N-terminal RD03_RS00055 PF03144 Elongation factor Tu domain 2 RD03_RS00055 PF03143 Elongation factor Tu C-terminal domain RD03_RS00055 PF00009 Elongation factor Tu GTP binding domain RD03_RS00065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RD03_RS00070 PF02357 Transcription termination factor nusG RD03_RS00070 PF00467 KOW motif RD03_RS00075 PF03946 Ribosomal protein L11, N-terminal domain RD03_RS00075 PF00298 Ribosomal protein L11, RNA binding domain RD03_RS00080 PF00687 Ribosomal protein L1p/L10e family RD03_RS00085 PF00466 Ribosomal protein L10 RD03_RS00090 PF00542 Ribosomal protein L7/L12 C-terminal domain RD03_RS00090 PF16320 Ribosomal protein L7/L12 dimerisation domain RD03_RS00095 PF04560 RNA polymerase Rpb2, domain 7 RD03_RS00095 PF00562 RNA polymerase Rpb2, domain 6 RD03_RS00095 PF10385 RNA polymerase beta subunit external 1 domain RD03_RS00095 PF04565 RNA polymerase Rpb2, domain 3 RD03_RS00095 PF04563 RNA polymerase beta subunit RD03_RS00095 PF04561 RNA polymerase Rpb2, domain 2 RD03_RS00100 PF04997 RNA polymerase Rpb1, domain 1 RD03_RS00100 PF00623 RNA polymerase Rpb1, domain 2 RD03_RS00100 PF04983 RNA polymerase Rpb1, domain 3 RD03_RS00100 PF05000 RNA polymerase Rpb1, domain 4 RD03_RS00100 PF04998 RNA polymerase Rpb1, domain 5 RD03_RS00130 PF00072 Response regulator receiver domain RD03_RS00130 PF00486 Transcriptional regulatory protein, C terminal RD03_RS00140 PF02515 CoA-transferase family III RD03_RS00155 PF01575 MaoC like domain RD03_RS00160 PF03466 LysR substrate binding domain RD03_RS00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS00165 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS00185 PF02091 Glycyl-tRNA synthetase alpha subunit RD03_RS00190 PF05746 DALR anticodon binding domain RD03_RS00190 PF02092 Glycyl-tRNA synthetase beta subunit RD03_RS00200 PF01553 Acyltransferase RD03_RS00210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD03_RS00215 PF01327 Polypeptide deformylase RD03_RS00250 PF02615 Malate/L-lactate dehydrogenase RD03_RS00255 PF00561 alpha/beta hydrolase fold RD03_RS00260 PF00561 alpha/beta hydrolase fold RD03_RS00260 PF07021 Methionine biosynthesis protein MetW RD03_RS00270 PF07690 Major Facilitator Superfamily RD03_RS00280 PF01177 Asp/Glu/Hydantoin racemase RD03_RS00285 PF00005 ABC transporter RD03_RS00290 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS00295 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS00300 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS00330 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS00345 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS00345 PF00970 Oxidoreductase FAD-binding domain RD03_RS00345 PF00175 Oxidoreductase NAD-binding domain RD03_RS00350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD03_RS00360 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS00390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS00390 PF00183 Hsp90 protein RD03_RS00395 PF13417 Glutathione S-transferase, N-terminal domain RD03_RS00395 PF00043 Glutathione S-transferase, C-terminal domain RD03_RS00400 PF01510 N-acetylmuramoyl-L-alanine amidase RD03_RS00410 PF01578 Cytochrome C assembly protein RD03_RS00415 PF02881 SRP54-type protein, helical bundle domain RD03_RS00415 PF02978 Signal peptide binding domain RD03_RS00415 PF00448 SRP54-type protein, GTPase domain RD03_RS00430 PF02719 Polysaccharide biosynthesis protein RD03_RS00440 PF10997 Alternate to MurJ RD03_RS00445 PF00534 Glycosyl transferases group 1 RD03_RS00445 PF00862 Sucrose synthase RD03_RS00450 PF02397 Bacterial sugar transferase RD03_RS00455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD03_RS00465 PF02350 UDP-N-acetylglucosamine 2-epimerase RD03_RS00470 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD03_RS00475 PF00132 Bacterial transferase hexapeptide (six repeats) RD03_RS00480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RD03_RS00480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RD03_RS00485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD03_RS00490 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RD03_RS00490 PF00534 Glycosyl transferases group 1 RD03_RS00500 PF03309 Type III pantothenate kinase RD03_RS00510 PF02405 Permease MlaE RD03_RS00515 PF00005 ABC transporter RD03_RS00540 PF07943 Penicillin-binding protein 5, C-terminal domain RD03_RS00540 PF00768 D-alanyl-D-alanine carboxypeptidase RD03_RS00545 PF01063 Amino-transferase class IV RD03_RS00550 PF04359 Protein of unknown function (DUF493) RD03_RS00555 PF03099 Biotin/lipoate A/B protein ligase family RD03_RS00560 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RD03_RS00560 PF04055 Radical SAM superfamily RD03_RS00565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RD03_RS00570 PF04321 RmlD substrate binding domain RD03_RS00575 PF16363 GDP-mannose 4,6 dehydratase RD03_RS00590 PF01053 Cys/Met metabolism PLP-dependent enzyme RD03_RS00595 PF00085 Thioredoxin RD03_RS00595 PF01323 DSBA-like thioredoxin domain RD03_RS00605 PF03485 Arginyl tRNA synthetase N terminal domain RD03_RS00605 PF05746 DALR anticodon binding domain RD03_RS00605 PF00750 tRNA synthetases class I (R) RD03_RS00625 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS00630 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS00635 PF13416 Bacterial extracellular solute-binding protein RD03_RS00640 PF00005 ABC transporter RD03_RS00640 PF17912 MalK OB fold domain RD03_RS00645 PF00149 Calcineurin-like phosphoesterase RD03_RS00655 PF12857 TOBE-like domain RD03_RS00655 PF00005 ABC transporter RD03_RS00660 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS00675 PF00356 Bacterial regulatory proteins, lacI family RD03_RS00685 PF01425 Amidase RD03_RS00690 PF00682 HMGL-like RD03_RS00690 PF08502 LeuA allosteric (dimerisation) domain RD03_RS00700 PF04552 Sigma-54, DNA binding domain RD03_RS00700 PF04963 Sigma-54 factor, core binding domain RD03_RS00700 PF00309 Sigma-54 factor, Activator interacting domain (AID) RD03_RS00710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS00710 PF03466 LysR substrate binding domain RD03_RS00725 PF13609 Gram-negative porin RD03_RS00730 PF00585 C-terminal regulatory domain of Threonine dehydratase RD03_RS00730 PF00291 Pyridoxal-phosphate dependent enzyme RD03_RS00745 PF07729 FCD domain RD03_RS00745 PF00392 Bacterial regulatory proteins, gntR family RD03_RS00750 PF02515 CoA-transferase family III RD03_RS00760 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS00765 PF01494 FAD binding domain RD03_RS00770 PF01494 FAD binding domain RD03_RS00775 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS00785 PF03746 LamB/YcsF family RD03_RS00790 PF02626 Carboxyltransferase domain, subdomain A and B RD03_RS00795 PF02682 Carboxyltransferase domain, subdomain C and D RD03_RS00805 PF03466 LysR substrate binding domain RD03_RS00805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS00810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD03_RS00810 PF01842 ACT domain RD03_RS00810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD03_RS00820 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS00820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS00820 PF00672 HAMP domain RD03_RS00825 PF00486 Transcriptional regulatory protein, C terminal RD03_RS00825 PF00072 Response regulator receiver domain RD03_RS00830 PF11808 Phosphate regulon sensor protein PhoR RD03_RS00830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS00830 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS00830 PF00989 PAS fold RD03_RS00835 PF00486 Transcriptional regulatory protein, C terminal RD03_RS00835 PF00072 Response regulator receiver domain RD03_RS00840 PF01209 ubiE/COQ5 methyltransferase family RD03_RS00855 PF03109 ABC1 family RD03_RS00870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS00870 PF00005 ABC transporter RD03_RS00875 PF04536 TPM domain RD03_RS00885 PF00270 DEAD/DEAH box helicase RD03_RS00885 PF00271 Helicase conserved C-terminal domain RD03_RS00890 PF01810 LysE type translocator RD03_RS00895 PF00009 Elongation factor Tu GTP binding domain RD03_RS00895 PF16658 Class II release factor RF3, C-terminal domain RD03_RS00895 PF03144 Elongation factor Tu domain 2 RD03_RS00905 PF00210 Ferritin-like domain RD03_RS00930 PF17773 UPF0176 acylphosphatase like domain RD03_RS00930 PF00581 Rhodanese-like domain RD03_RS00935 PF09334 tRNA synthetases class I (M) RD03_RS00935 PF01588 Putative tRNA binding domain RD03_RS00945 PF10609 NUBPL iron-transfer P-loop NTPase RD03_RS00960 PF00692 dUTPase RD03_RS00985 PF01276 Orn/Lys/Arg decarboxylase, major domain RD03_RS00985 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RD03_RS00985 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RD03_RS01000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD03_RS01000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD03_RS01005 PF02535 ZIP Zinc transporter RD03_RS01010 PF01571 Aminomethyltransferase folate-binding domain RD03_RS01010 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD03_RS01015 PF01597 Glycine cleavage H-protein RD03_RS01020 PF02347 Glycine cleavage system P-protein RD03_RS01025 PF07729 FCD domain RD03_RS01025 PF00392 Bacterial regulatory proteins, gntR family RD03_RS01030 PF02515 CoA-transferase family III RD03_RS01040 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS01060 PF12146 Serine aminopeptidase, S33 RD03_RS01070 PF02426 Muconolactone delta-isomerase RD03_RS01075 PF01144 Coenzyme A transferase RD03_RS01080 PF01144 Coenzyme A transferase RD03_RS01085 PF01614 Bacterial transcriptional regulator RD03_RS01085 PF09339 IclR helix-turn-helix domain RD03_RS01095 PF02667 Short chain fatty acid transporter RD03_RS01100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD03_RS01100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD03_RS01105 PF03797 Autotransporter beta-domain RD03_RS01105 PF00082 Subtilase family RD03_RS01110 PF00311 Phosphoenolpyruvate carboxylase RD03_RS01115 PF06508 Queuosine biosynthesis protein QueC RD03_RS01140 PF02913 FAD linked oxidases, C-terminal domain RD03_RS01140 PF01565 FAD binding domain RD03_RS01145 PF00171 Aldehyde dehydrogenase family RD03_RS01150 PF01964 Radical SAM ThiC family RD03_RS01150 PF13667 ThiC-associated domain RD03_RS01155 PF07549 SecD/SecF GG Motif RD03_RS01155 PF02355 Protein export membrane protein RD03_RS01160 PF09518 HindIII restriction endonuclease RD03_RS01190 PF02627 Carboxymuconolactone decarboxylase family RD03_RS01195 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD03_RS01195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD03_RS01200 PF07702 UTRA domain RD03_RS01200 PF00392 Bacterial regulatory proteins, gntR family RD03_RS01205 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS01210 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD03_RS01220 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS01225 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RD03_RS01230 PF12626 Polymerase A arginine-rich C-terminus RD03_RS01230 PF01743 Poly A polymerase head domain RD03_RS01230 PF12627 Probable RNA and SrmB- binding site of polymerase A RD03_RS01240 PF00308 Bacterial dnaA protein RD03_RS01245 PF02769 AIR synthase related protein, C-terminal domain RD03_RS01245 PF00586 AIR synthase related protein, N-terminal domain RD03_RS01255 PF08676 MutL C terminal dimerisation domain RD03_RS01255 PF01119 DNA mismatch repair protein, C-terminal domain RD03_RS01260 PF09335 SNARE associated Golgi protein RD03_RS01265 PF11741 AMIN domain RD03_RS01265 PF01520 N-acetylmuramoyl-L-alanine amidase RD03_RS01270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RD03_RS01275 PF10415 Fumarase C C-terminus RD03_RS01275 PF00206 Lyase RD03_RS01285 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS01290 PF03466 LysR substrate binding domain RD03_RS01300 PF02515 CoA-transferase family III RD03_RS01305 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS01310 PF18158 Adaptive response protein AidB N-terminal domain RD03_RS01310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS01310 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS01330 PF01654 Cytochrome bd terminal oxidase subunit I RD03_RS01335 PF02322 Cytochrome bd terminal oxidase subunit II RD03_RS01340 PF08173 Membrane bound YbgT-like protein RD03_RS01345 PF00005 ABC transporter RD03_RS01345 PF00664 ABC transporter transmembrane region RD03_RS01350 PF00664 ABC transporter transmembrane region RD03_RS01350 PF00005 ABC transporter RD03_RS01355 PF00156 Phosphoribosyl transferase domain RD03_RS01370 PF13609 Gram-negative porin RD03_RS01395 PF04386 Stringent starvation protein B RD03_RS01400 PF02798 Glutathione S-transferase, N-terminal domain RD03_RS01400 PF00043 Glutathione S-transferase, C-terminal domain RD03_RS01405 PF02167 Cytochrome C1 family RD03_RS01410 PF00032 Cytochrome b(C-terminal)/b6/petD RD03_RS01410 PF00033 Cytochrome b/b6/petB RD03_RS01415 PF00355 Rieske [2Fe-2S] domain RD03_RS01415 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RD03_RS01420 PF01741 Large-conductance mechanosensitive channel, MscL RD03_RS01425 PF01784 NIF3 (NGG1p interacting factor 3) RD03_RS01430 PF13180 PDZ domain RD03_RS01440 PF04299 Putative FMN-binding domain RD03_RS01445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD03_RS01450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS01455 PF07859 alpha/beta hydrolase fold RD03_RS01465 PF08502 LeuA allosteric (dimerisation) domain RD03_RS01465 PF00682 HMGL-like RD03_RS01470 PF12833 Helix-turn-helix domain RD03_RS01475 PF00920 Dehydratase family RD03_RS01480 PF07690 Major Facilitator Superfamily RD03_RS01485 PF03466 LysR substrate binding domain RD03_RS01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS01495 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RD03_RS01525 PF07859 alpha/beta hydrolase fold RD03_RS01535 PF02653 Branched-chain amino acid transport system / permease component RD03_RS01540 PF02653 Branched-chain amino acid transport system / permease component RD03_RS01540 PF11862 Domain of unknown function (DUF3382) RD03_RS01545 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD03_RS01545 PF00005 ABC transporter RD03_RS01550 PF00005 ABC transporter RD03_RS01565 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS01570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS01570 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS01570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS01575 PF13193 AMP-binding enzyme C-terminal domain RD03_RS01575 PF00501 AMP-binding enzyme RD03_RS01595 PF00202 Aminotransferase class-III RD03_RS01600 PF02581 Thiamine monophosphate synthase RD03_RS01605 PF08543 Phosphomethylpyrimidine kinase RD03_RS01610 PF00301 Rubredoxin RD03_RS01615 PF02622 Uncharacterized ACR, COG1678 RD03_RS01620 PF03652 Holliday junction resolvase RD03_RS01625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD03_RS01625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD03_RS01630 PF01979 Amidohydrolase family RD03_RS01635 PF01553 Acyltransferase RD03_RS01640 PF00149 Calcineurin-like phosphoesterase RD03_RS01650 PF00912 Transglycosylase RD03_RS01665 PF13193 AMP-binding enzyme C-terminal domain RD03_RS01665 PF00501 AMP-binding enzyme RD03_RS01670 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS01685 PF12706 Beta-lactamase superfamily domain RD03_RS01690 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS01710 PF03707 Bacterial signalling protein N terminal repeat RD03_RS01710 PF00990 Diguanylate cyclase, GGDEF domain RD03_RS01710 PF00563 EAL domain RD03_RS01715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD03_RS01715 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD03_RS01720 PF13532 2OG-Fe(II) oxygenase superfamily RD03_RS01725 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA RD03_RS01730 PF04463 Protein of unknown function (DUF523) RD03_RS01735 PF00005 ABC transporter RD03_RS01740 PF01032 FecCD transport family RD03_RS01745 PF01497 Periplasmic binding protein RD03_RS01750 PF05171 Haemin-degrading HemS.ChuX domain RD03_RS01755 PF00593 TonB dependent receptor RD03_RS01755 PF07715 TonB-dependent Receptor Plug Domain RD03_RS01755 PF04886 PT repeat RD03_RS01760 PF04773 FecR protein RD03_RS01760 PF16220 Domain of unknown function (DUF4880) RD03_RS01765 PF08281 Sigma-70, region 4 RD03_RS01765 PF04542 Sigma-70 region 2 RD03_RS01790 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD03_RS01800 PF07729 FCD domain RD03_RS01800 PF00392 Bacterial regulatory proteins, gntR family RD03_RS01820 PF00171 Aldehyde dehydrogenase family RD03_RS01830 PF00970 Oxidoreductase FAD-binding domain RD03_RS01830 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS01830 PF00175 Oxidoreductase NAD-binding domain RD03_RS01855 PF03458 UPF0126 domain RD03_RS01860 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD03_RS01860 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD03_RS01865 PF03372 Endonuclease/Exonuclease/phosphatase family RD03_RS01870 PF00156 Phosphoribosyl transferase domain RD03_RS01875 PF02934 GatB/GatE catalytic domain RD03_RS01875 PF02637 GatB domain RD03_RS01880 PF01425 Amidase RD03_RS01885 PF02686 Glu-tRNAGln amidotransferase C subunit RD03_RS01895 PF04085 rod shape-determining protein MreC RD03_RS01905 PF00905 Penicillin binding protein transpeptidase domain RD03_RS01905 PF03717 Penicillin-binding Protein dimerisation domain RD03_RS01910 PF01098 Cell cycle protein RD03_RS01915 PF02615 Malate/L-lactate dehydrogenase RD03_RS01920 PF00939 Sodium:sulfate symporter transmembrane region RD03_RS01925 PF00440 Bacterial regulatory proteins, tetR family RD03_RS01935 PF00696 Amino acid kinase family RD03_RS01940 PF03180 NLPA lipoprotein RD03_RS01945 PF00578 AhpC/TSA family RD03_RS01950 PF04972 BON domain RD03_RS01955 PF13580 SIS domain RD03_RS01960 PF02021 Uncharacterised protein family UPF0102 RD03_RS01965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD03_RS01970 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD03_RS01970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD03_RS01990 PF02515 CoA-transferase family III RD03_RS01995 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS02000 PF02515 CoA-transferase family III RD03_RS02020 PF09339 IclR helix-turn-helix domain RD03_RS02025 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS02035 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS02040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD03_RS02040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD03_RS02040 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS02045 PF02515 CoA-transferase family III RD03_RS02050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD03_RS02050 PF00205 Thiamine pyrophosphate enzyme, central domain RD03_RS02050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD03_RS02055 PF03466 LysR substrate binding domain RD03_RS02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS02065 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS02075 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS02090 PF00892 EamA-like transporter family RD03_RS02095 PF01810 LysE type translocator RD03_RS02100 PF12146 Serine aminopeptidase, S33 RD03_RS02115 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RD03_RS02120 PF00535 Glycosyl transferase family 2 RD03_RS02135 PF03616 Sodium/glutamate symporter RD03_RS02145 PF02667 Short chain fatty acid transporter RD03_RS02160 PF00929 Exonuclease RD03_RS02165 PF00873 AcrB/AcrD/AcrF family RD03_RS02175 PF03144 Elongation factor Tu domain 2 RD03_RS02175 PF00009 Elongation factor Tu GTP binding domain RD03_RS02175 PF03764 Elongation factor G, domain IV RD03_RS02175 PF14492 Elongation Factor G, domain II RD03_RS02175 PF00679 Elongation factor G C-terminus RD03_RS02180 PF00582 Universal stress protein family RD03_RS02190 PF00392 Bacterial regulatory proteins, gntR family RD03_RS02190 PF00155 Aminotransferase class I and II RD03_RS02195 PF03144 Elongation factor Tu domain 2 RD03_RS02195 PF00009 Elongation factor Tu GTP binding domain RD03_RS02195 PF03764 Elongation factor G, domain IV RD03_RS02195 PF14492 Elongation Factor G, domain II RD03_RS02195 PF00679 Elongation factor G C-terminus RD03_RS02200 PF02308 MgtC family RD03_RS02205 PF03741 Integral membrane protein TerC family RD03_RS02205 PF03471 Transporter associated domain RD03_RS02210 PF02515 CoA-transferase family III RD03_RS02215 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS02220 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS02225 PF03466 LysR substrate binding domain RD03_RS02225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS02230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS02230 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS02230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS02240 PF00108 Thiolase, N-terminal domain RD03_RS02240 PF02803 Thiolase, C-terminal domain RD03_RS02260 PF03466 LysR substrate binding domain RD03_RS02260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS02265 PF00313 'Cold-shock' DNA-binding domain RD03_RS02275 PF07729 FCD domain RD03_RS02275 PF00392 Bacterial regulatory proteins, gntR family RD03_RS02280 PF00171 Aldehyde dehydrogenase family RD03_RS02285 PF02667 Short chain fatty acid transporter RD03_RS02290 PF00175 Oxidoreductase NAD-binding domain RD03_RS02290 PF00970 Oxidoreductase FAD-binding domain RD03_RS02290 PF00042 Globin RD03_RS02295 PF01042 Endoribonuclease L-PSP RD03_RS02300 PF03466 LysR substrate binding domain RD03_RS02300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS02320 PF02515 CoA-transferase family III RD03_RS02330 PF03466 LysR substrate binding domain RD03_RS02330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS02335 PF02515 CoA-transferase family III RD03_RS02345 PF01794 Ferric reductase like transmembrane component RD03_RS02350 PF00174 Oxidoreductase molybdopterin binding domain RD03_RS02355 PF13419 Haloacid dehalogenase-like hydrolase RD03_RS02360 PF00849 RNA pseudouridylate synthase RD03_RS02360 PF01479 S4 domain RD03_RS02365 PF10150 Ribonuclease E/G family RD03_RS02365 PF12111 Polyribonucleotide phosphorylase C terminal RD03_RS02365 PF00575 S1 RNA binding domain RD03_RS02380 PF09411 Lipid A 3-O-deacylase (PagL) RD03_RS02385 PF01039 Carboxyl transferase domain RD03_RS02385 PF17848 Acetyl-coA carboxylase zinc finger domain RD03_RS02390 PF00290 Tryptophan synthase alpha chain RD03_RS02395 PF00291 Pyridoxal-phosphate dependent enzyme RD03_RS02400 PF07687 Peptidase dimerisation domain RD03_RS02400 PF01546 Peptidase family M20/M25/M40 RD03_RS02405 PF02824 TGS domain RD03_RS02405 PF04607 Region found in RelA / SpoT proteins RD03_RS02405 PF13291 ACT domain RD03_RS02410 PF06167 Glucose-regulated metallo-peptidase M90 RD03_RS02420 PF01042 Endoribonuclease L-PSP RD03_RS02425 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RD03_RS02425 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RD03_RS02430 PF11953 Domain of unknown function (DUF3470) RD03_RS02430 PF00037 4Fe-4S binding domain RD03_RS02435 PF00175 Oxidoreductase NAD-binding domain RD03_RS02435 PF00970 Oxidoreductase FAD-binding domain RD03_RS02445 PF04060 Putative Fe-S cluster RD03_RS02450 PF00730 HhH-GPD superfamily base excision DNA repair protein RD03_RS02450 PF00633 Helix-hairpin-helix motif RD03_RS02450 PF10576 Iron-sulfur binding domain of endonuclease III RD03_RS02455 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD03_RS02455 PF00005 ABC transporter RD03_RS02460 PF00005 ABC transporter RD03_RS02470 PF02653 Branched-chain amino acid transport system / permease component RD03_RS02485 PF01063 Amino-transferase class IV RD03_RS02490 PF00005 ABC transporter RD03_RS02490 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD03_RS02505 PF02632 BioY family RD03_RS02510 PF02361 Cobalt transport protein RD03_RS02515 PF00005 ABC transporter RD03_RS02520 PF01641 SelR domain RD03_RS02525 PF04279 Intracellular septation protein A RD03_RS02540 PF12826 Helix-hairpin-helix motif RD03_RS02540 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RD03_RS02540 PF03120 NAD-dependent DNA ligase OB-fold domain RD03_RS02540 PF01653 NAD-dependent DNA ligase adenylation domain RD03_RS02540 PF00533 BRCA1 C Terminus (BRCT) domain RD03_RS02550 PF06470 SMC proteins Flexible Hinge Domain RD03_RS02550 PF02463 RecF/RecN/SMC N terminal domain RD03_RS02555 PF07690 Major Facilitator Superfamily RD03_RS02560 PF03167 Uracil DNA glycosylase superfamily RD03_RS02565 PF00814 Glycoprotease family RD03_RS02570 PF00072 Response regulator receiver domain RD03_RS02570 PF00486 Transcriptional regulatory protein, C terminal RD03_RS02580 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS02580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS02580 PF00672 HAMP domain RD03_RS02585 PF00578 AhpC/TSA family RD03_RS02590 PF02627 Carboxymuconolactone decarboxylase family RD03_RS02600 PF07690 Major Facilitator Superfamily RD03_RS02610 PF07729 FCD domain RD03_RS02610 PF00392 Bacterial regulatory proteins, gntR family RD03_RS02625 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS02630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD03_RS02630 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD03_RS02640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS02640 PF03466 LysR substrate binding domain RD03_RS02650 PF00202 Aminotransferase class-III RD03_RS02655 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD03_RS02655 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD03_RS02660 PF00764 Arginosuccinate synthase RD03_RS02665 PF02705 K+ potassium transporter RD03_RS02670 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS02670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS02670 PF08521 Two-component sensor kinase N-terminal RD03_RS02675 PF00072 Response regulator receiver domain RD03_RS02675 PF00486 Transcriptional regulatory protein, C terminal RD03_RS02680 PF02472 Biopolymer transport protein ExbD/TolR RD03_RS02685 PF01618 MotA/TolQ/ExbB proton channel family RD03_RS02700 PF00216 Bacterial DNA-binding protein RD03_RS02705 PF18331 PKHD-type hydroxylase C-terminal domain RD03_RS02705 PF13640 2OG-Fe(II) oxygenase superfamily RD03_RS02710 PF01053 Cys/Met metabolism PLP-dependent enzyme RD03_RS02715 PF00588 SpoU rRNA Methylase family RD03_RS02715 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD03_RS02720 PF00773 RNB domain RD03_RS02720 PF08461 Ribonuclease R winged-helix domain RD03_RS02720 PF17876 Cold shock domain RD03_RS02720 PF00575 S1 RNA binding domain RD03_RS02720 PF08206 Ribonuclease B OB domain RD03_RS02740 PF13673 Acetyltransferase (GNAT) domain RD03_RS02745 PF03547 Membrane transport protein RD03_RS02750 PF04143 Sulphur transport RD03_RS02755 PF01645 Conserved region in glutamate synthase RD03_RS02765 PF13396 Phospholipase_D-nuclease N-terminal RD03_RS02765 PF13091 PLD-like domain RD03_RS02775 PF10017 Histidine-specific methyltransferase, SAM-dependent RD03_RS02780 PF12867 DinB superfamily RD03_RS02780 PF03781 Sulfatase-modifying factor enzyme 1 RD03_RS02810 PF00072 Response regulator receiver domain RD03_RS02815 PF00990 Diguanylate cyclase, GGDEF domain RD03_RS02835 PF00890 FAD binding domain RD03_RS02840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS02840 PF03466 LysR substrate binding domain RD03_RS02850 PF00890 FAD binding domain RD03_RS02870 PF00166 Chaperonin 10 Kd subunit RD03_RS02875 PF00118 TCP-1/cpn60 chaperonin family RD03_RS02880 PF03797 Autotransporter beta-domain RD03_RS02880 PF03212 Pertactin RD03_RS02885 PF03631 Virulence factor BrkB RD03_RS02890 PF01219 Prokaryotic diacylglycerol kinase RD03_RS02895 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS02900 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RD03_RS02905 PF02464 Competence-damaged protein RD03_RS02905 PF18146 Damage-inducible protein CinA KH domain RD03_RS02905 PF00994 Probable molybdopterin binding domain RD03_RS02910 PF04608 Phosphatidylglycerophosphatase A RD03_RS02915 PF02769 AIR synthase related protein, C-terminal domain RD03_RS02915 PF00586 AIR synthase related protein, N-terminal domain RD03_RS02920 PF01029 NusB family RD03_RS02925 PF00885 6,7-dimethyl-8-ribityllumazine synthase RD03_RS02930 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD03_RS02930 PF00925 GTP cyclohydrolase II RD03_RS02950 PF00005 ABC transporter RD03_RS02960 PF00005 ABC transporter RD03_RS02965 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS02970 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS02985 PF02881 SRP54-type protein, helical bundle domain RD03_RS02985 PF00448 SRP54-type protein, GTPase domain RD03_RS02995 PF01467 Cytidylyltransferase-like RD03_RS03000 PF00037 4Fe-4S binding domain RD03_RS03005 PF03594 Benzoate membrane transport protein RD03_RS03020 PF01022 Bacterial regulatory protein, arsR family RD03_RS03035 PF03466 LysR substrate binding domain RD03_RS03035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS03050 PF00005 ABC transporter RD03_RS03050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS03055 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS03060 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS03070 PF00390 Malic enzyme, N-terminal domain RD03_RS03070 PF03949 Malic enzyme, NAD binding domain RD03_RS03070 PF01515 Phosphate acetyl/butaryl transferase RD03_RS03075 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD03_RS03080 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS03085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD03_RS03085 PF00205 Thiamine pyrophosphate enzyme, central domain RD03_RS03085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD03_RS03090 PF00392 Bacterial regulatory proteins, gntR family RD03_RS03090 PF07729 FCD domain RD03_RS03130 PF03466 LysR substrate binding domain RD03_RS03130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS03140 PF04376 Arginine-tRNA-protein transferase, N terminus RD03_RS03140 PF04377 Arginine-tRNA-protein transferase, C terminus RD03_RS03145 PF01180 Dihydroorotate dehydrogenase RD03_RS03155 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS03160 PF18807 Tripartite Tc toxins repeat RD03_RS03160 PF05785 Rho-activating domain of cytotoxic necrotizing factor RD03_RS03165 PF09339 IclR helix-turn-helix domain RD03_RS03165 PF01614 Bacterial transcriptional regulator RD03_RS03170 PF02464 Competence-damaged protein RD03_RS03170 PF18146 Damage-inducible protein CinA KH domain RD03_RS03170 PF00994 Probable molybdopterin binding domain RD03_RS03190 PF00270 DEAD/DEAH box helicase RD03_RS03190 PF00271 Helicase conserved C-terminal domain RD03_RS03205 PF01063 Amino-transferase class IV RD03_RS03220 PF00561 alpha/beta hydrolase fold RD03_RS03225 PF13181 Tetratricopeptide repeat RD03_RS03225 PF01435 Peptidase family M48 RD03_RS03230 PF00483 Nucleotidyl transferase RD03_RS03240 PF13609 Gram-negative porin RD03_RS03265 PF00557 Metallopeptidase family M24 RD03_RS03265 PF05195 Aminopeptidase P, N-terminal domain RD03_RS03275 PF01494 FAD binding domain RD03_RS03280 PF01207 Dihydrouridine synthase (Dus) RD03_RS03285 PF02954 Bacterial regulatory protein, Fis family RD03_RS03290 PF01808 AICARFT/IMPCHase bienzyme RD03_RS03290 PF02142 MGS-like domain RD03_RS03295 PF02075 Crossover junction endodeoxyribonuclease RuvC RD03_RS03300 PF01330 RuvA N terminal domain RD03_RS03300 PF07499 RuvA, C-terminal domain RD03_RS03305 PF01370 NAD dependent epimerase/dehydratase family RD03_RS03310 PF00291 Pyridoxal-phosphate dependent enzyme RD03_RS03315 PF17864 RuvB AAA lid domain RD03_RS03315 PF05491 RuvB C-terminal winged helix domain RD03_RS03315 PF05496 Holliday junction DNA helicase RuvB P-loop domain RD03_RS03320 PF16124 RecQ zinc-binding RD03_RS03320 PF00570 HRDC domain RD03_RS03320 PF00271 Helicase conserved C-terminal domain RD03_RS03320 PF00270 DEAD/DEAH box helicase RD03_RS03320 PF09382 RQC domain RD03_RS03335 PF00484 Carbonic anhydrase RD03_RS03340 PF01425 Amidase RD03_RS03345 PF13458 Periplasmic binding protein RD03_RS03350 PF02653 Branched-chain amino acid transport system / permease component RD03_RS03355 PF02653 Branched-chain amino acid transport system / permease component RD03_RS03360 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD03_RS03360 PF00005 ABC transporter RD03_RS03365 PF00005 ABC transporter RD03_RS03370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RD03_RS03370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RD03_RS03380 PF03180 NLPA lipoprotein RD03_RS03520 PF06791 Prophage tail length tape measure protein RD03_RS03585 PF02586 SOS response associated peptidase (SRAP) RD03_RS03595 PF00486 Transcriptional regulatory protein, C terminal RD03_RS03595 PF00072 Response regulator receiver domain RD03_RS03600 PF00293 NUDIX domain RD03_RS03605 PF04073 Aminoacyl-tRNA editing domain RD03_RS03605 PF03129 Anticodon binding domain RD03_RS03605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD03_RS03610 PF03061 Thioesterase superfamily RD03_RS03615 PF01618 MotA/TolQ/ExbB proton channel family RD03_RS03620 PF02472 Biopolymer transport protein ExbD/TolR RD03_RS03630 PF07676 WD40-like Beta Propeller Repeat RD03_RS03630 PF04052 TolB amino-terminal domain RD03_RS03635 PF00691 OmpA family RD03_RS03645 PF01032 FecCD transport family RD03_RS03650 PF00005 ABC transporter RD03_RS03655 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS03660 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS03675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS03675 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS03675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS03675 PF09317 Domain of unknown function (DUF1974) RD03_RS03680 PF07670 Nucleoside recognition RD03_RS03685 PF00224 Pyruvate kinase, barrel domain RD03_RS03685 PF02887 Pyruvate kinase, alpha/beta domain RD03_RS03690 PF02595 Glycerate kinase family RD03_RS03695 PF00398 Ribosomal RNA adenine dimethylase RD03_RS03700 PF09312 SurA N-terminal domain RD03_RS03700 PF00639 PPIC-type PPIASE domain RD03_RS03705 PF04453 LPS transport system D RD03_RS03710 PF01636 Phosphotransferase enzyme family RD03_RS03715 PF00483 Nucleotidyl transferase RD03_RS03725 PF01329 Pterin 4 alpha carbinolamine dehydratase RD03_RS03730 PF00691 OmpA family RD03_RS03730 PF04972 BON domain RD03_RS03750 PF00202 Aminotransferase class-III RD03_RS03755 PF01425 Amidase RD03_RS03760 PF00005 ABC transporter RD03_RS03760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS03765 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS03770 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS03775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS03795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD03_RS03800 PF03435 Saccharopine dehydrogenase NADP binding domain RD03_RS03800 PF16653 Saccharopine dehydrogenase C-terminal domain RD03_RS03815 PF04264 YceI-like domain RD03_RS03820 PF00593 TonB dependent receptor RD03_RS03820 PF07715 TonB-dependent Receptor Plug Domain RD03_RS03825 PF04773 FecR protein RD03_RS03825 PF16220 Domain of unknown function (DUF4880) RD03_RS03865 PF01472 PUA domain RD03_RS03865 PF00696 Amino acid kinase family RD03_RS03870 PF01018 GTP1/OBG RD03_RS03870 PF01926 50S ribosome-binding GTPase RD03_RS03875 PF01016 Ribosomal L27 protein RD03_RS03880 PF00829 Ribosomal prokaryotic L21 protein RD03_RS03890 PF00348 Polyprenyl synthetase RD03_RS03900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS03900 PF03466 LysR substrate binding domain RD03_RS03905 PF05378 Hydantoinase/oxoprolinase N-terminal region RD03_RS03905 PF01968 Hydantoinase/oxoprolinase RD03_RS03910 PF02538 Hydantoinase B/oxoprolinase RD03_RS03915 PF01266 FAD dependent oxidoreductase RD03_RS03925 PF00171 Aldehyde dehydrogenase family RD03_RS03930 PF02794 RTX toxin acyltransferase family RD03_RS03940 PF03497 Anthrax toxin LF subunit RD03_RS03940 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RD03_RS03940 PF02382 N-terminal domain in RTX protein RD03_RS03945 PF03412 Peptidase C39 family RD03_RS03945 PF00005 ABC transporter RD03_RS03945 PF00664 ABC transporter transmembrane region RD03_RS03950 PF13533 Biotin-lipoyl like RD03_RS03955 PF02321 Outer membrane efflux protein RD03_RS03960 PF03466 LysR substrate binding domain RD03_RS03960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS03965 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS03975 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS03980 PF00005 ABC transporter RD03_RS03985 PF01063 Amino-transferase class IV RD03_RS04005 PF00205 Thiamine pyrophosphate enzyme, central domain RD03_RS04005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD03_RS04005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD03_RS04010 PF00392 Bacterial regulatory proteins, gntR family RD03_RS04010 PF07729 FCD domain RD03_RS04020 PF00392 Bacterial regulatory proteins, gntR family RD03_RS04020 PF07729 FCD domain RD03_RS04025 PF08240 Alcohol dehydrogenase GroES-like domain RD03_RS04025 PF00107 Zinc-binding dehydrogenase RD03_RS04030 PF00501 AMP-binding enzyme RD03_RS04030 PF13193 AMP-binding enzyme C-terminal domain RD03_RS04040 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS04045 PF00005 ABC transporter RD03_RS04050 PF09084 NMT1/THI5 like RD03_RS04060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD03_RS04060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD03_RS04060 PF00205 Thiamine pyrophosphate enzyme, central domain RD03_RS04080 PF11940 Domain of unknown function (DUF3458) Ig-like fold RD03_RS04080 PF01433 Peptidase family M1 domain RD03_RS04080 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RD03_RS04085 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RD03_RS04095 PF02542 YgbB family RD03_RS04100 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RD03_RS04105 PF02559 CarD-like/TRCF domain RD03_RS04105 PF00270 DEAD/DEAH box helicase RD03_RS04105 PF17757 UvrB interaction domain RD03_RS04105 PF00271 Helicase conserved C-terminal domain RD03_RS04105 PF03461 TRCF domain RD03_RS04115 PF03466 LysR substrate binding domain RD03_RS04115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS04120 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS04125 PF00205 Thiamine pyrophosphate enzyme, central domain RD03_RS04125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD03_RS04125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD03_RS04140 PF07715 TonB-dependent Receptor Plug Domain RD03_RS04140 PF00593 TonB dependent receptor RD03_RS04145 PF00593 TonB dependent receptor RD03_RS04145 PF07715 TonB-dependent Receptor Plug Domain RD03_RS04155 PF00361 Proton-conducting membrane transporter RD03_RS04160 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus RD03_RS04160 PF00361 Proton-conducting membrane transporter RD03_RS04165 PF00361 Proton-conducting membrane transporter RD03_RS04165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD03_RS04170 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD03_RS04175 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RD03_RS04180 PF12838 4Fe-4S dicluster domain RD03_RS04185 PF00146 NADH dehydrogenase RD03_RS04190 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RD03_RS04190 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RD03_RS04190 PF00384 Molybdopterin oxidoreductase RD03_RS04195 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RD03_RS04195 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RD03_RS04195 PF10531 SLBB domain RD03_RS04205 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RD03_RS04210 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RD03_RS04215 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RD03_RS04220 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RD03_RS04225 PF13609 Gram-negative porin RD03_RS04250 PF01569 PAP2 superfamily RD03_RS04260 PF00781 Diacylglycerol kinase catalytic domain RD03_RS04265 PF03466 LysR substrate binding domain RD03_RS04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS04270 PF02028 BCCT, betaine/carnitine/choline family transporter RD03_RS04280 PF01638 HxlR-like helix-turn-helix RD03_RS04285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD03_RS04290 PF00873 AcrB/AcrD/AcrF family RD03_RS04295 PF02321 Outer membrane efflux protein RD03_RS04305 PF00127 Copper binding proteins, plastocyanin/azurin family RD03_RS04315 PF01968 Hydantoinase/oxoprolinase RD03_RS04315 PF05378 Hydantoinase/oxoprolinase N-terminal region RD03_RS04325 PF01266 FAD dependent oxidoreductase RD03_RS04330 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS04345 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD03_RS04350 PF01053 Cys/Met metabolism PLP-dependent enzyme RD03_RS04355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS04355 PF03466 LysR substrate binding domain RD03_RS04370 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS04375 PF00206 Lyase RD03_RS04375 PF14698 Argininosuccinate lyase C-terminal RD03_RS04390 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS04395 PF07476 Methylaspartate ammonia-lyase C-terminus RD03_RS04395 PF05034 Methylaspartate ammonia-lyase N-terminus RD03_RS04405 PF02028 BCCT, betaine/carnitine/choline family transporter RD03_RS04415 PF03840 Preprotein translocase SecG subunit RD03_RS04420 PF00121 Triosephosphate isomerase RD03_RS04425 PF08240 Alcohol dehydrogenase GroES-like domain RD03_RS04425 PF02801 Beta-ketoacyl synthase, C-terminal domain RD03_RS04425 PF00109 Beta-ketoacyl synthase, N-terminal domain RD03_RS04425 PF08659 KR domain RD03_RS04425 PF00550 Phosphopantetheine attachment site RD03_RS04425 PF14765 Polyketide synthase dehydratase RD03_RS04425 PF08990 Erythronolide synthase docking RD03_RS04425 PF16197 Ketoacyl-synthetase C-terminal extension RD03_RS04425 PF00698 Acyl transferase domain RD03_RS04440 PF00291 Pyridoxal-phosphate dependent enzyme RD03_RS04440 PF13291 ACT domain RD03_RS04455 PF03725 3' exoribonuclease family, domain 2 RD03_RS04455 PF00013 KH domain RD03_RS04455 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RD03_RS04455 PF01138 3' exoribonuclease family, domain 1 RD03_RS04455 PF00575 S1 RNA binding domain RD03_RS04460 PF00312 Ribosomal protein S15 RD03_RS04470 PF01066 CDP-alcohol phosphatidyltransferase RD03_RS04475 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RD03_RS04475 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RD03_RS04480 PF10369 Small subunit of acetolactate synthase RD03_RS04485 PF00205 Thiamine pyrophosphate enzyme, central domain RD03_RS04485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD03_RS04485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD03_RS04500 PF00664 ABC transporter transmembrane region RD03_RS04500 PF00005 ABC transporter RD03_RS04505 PF05724 Thiopurine S-methyltransferase (TPMT) RD03_RS04520 PF07317 Flagellar regulator YcgR RD03_RS04520 PF07238 PilZ domain RD03_RS04540 PF01966 HD domain RD03_RS04550 PF00364 Biotin-requiring enzyme RD03_RS04555 PF00682 HMGL-like RD03_RS04555 PF02436 Conserved carboxylase domain RD03_RS04555 PF00364 Biotin-requiring enzyme RD03_RS04575 PF00392 Bacterial regulatory proteins, gntR family RD03_RS04575 PF07702 UTRA domain RD03_RS04580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD03_RS04580 PF00289 Biotin carboxylase, N-terminal domain RD03_RS04580 PF02785 Biotin carboxylase C-terminal domain RD03_RS04585 PF01039 Carboxyl transferase domain RD03_RS04630 PF00005 ABC transporter RD03_RS04630 PF00664 ABC transporter transmembrane region RD03_RS04635 PF00248 Aldo/keto reductase family RD03_RS04640 PF00248 Aldo/keto reductase family RD03_RS04655 PF00149 Calcineurin-like phosphoesterase RD03_RS04660 PF00912 Transglycosylase RD03_RS04660 PF17092 Penicillin-binding protein OB-like domain RD03_RS04660 PF00905 Penicillin binding protein transpeptidase domain RD03_RS04665 PF00326 Prolyl oligopeptidase family RD03_RS04675 PF11799 impB/mucB/samB family C-terminal domain RD03_RS04675 PF11798 IMS family HHH motif RD03_RS04675 PF00817 impB/mucB/samB family RD03_RS04685 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS04690 PF03466 LysR substrate binding domain RD03_RS04690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS04715 PF07690 Major Facilitator Superfamily RD03_RS04720 PF13419 Haloacid dehalogenase-like hydrolase RD03_RS04730 PF00691 OmpA family RD03_RS04735 PF00521 DNA gyrase/topoisomerase IV, subunit A RD03_RS04735 PF03989 DNA gyrase C-terminal domain, beta-propeller RD03_RS04740 PF00266 Aminotransferase class-V RD03_RS04745 PF01817 Chorismate mutase type II RD03_RS04745 PF00800 Prephenate dehydratase RD03_RS04745 PF01842 ACT domain RD03_RS04750 PF02153 Prephenate dehydrogenase RD03_RS04755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD03_RS04760 PF02224 Cytidylate kinase RD03_RS04765 PF00575 S1 RNA binding domain RD03_RS04770 PF00216 Bacterial DNA-binding protein RD03_RS04780 PF18073 Rubredoxin metal binding domain RD03_RS04785 PF00294 pfkB family carbohydrate kinase RD03_RS04790 PF01370 NAD dependent epimerase/dehydratase family RD03_RS04795 PF10531 SLBB domain RD03_RS04805 PF00291 Pyridoxal-phosphate dependent enzyme RD03_RS04810 PF13406 Transglycosylase SLT domain RD03_RS04815 PF00850 Histone deacetylase domain RD03_RS04820 PF01012 Electron transfer flavoprotein domain RD03_RS04825 PF00766 Electron transfer flavoprotein FAD-binding domain RD03_RS04825 PF01012 Electron transfer flavoprotein domain RD03_RS04830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS04830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS04830 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD03_RS04830 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS04835 PF00578 AhpC/TSA family RD03_RS04835 PF10417 C-terminal domain of 1-Cys peroxiredoxin RD03_RS04850 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS04855 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS04860 PF00005 ABC transporter RD03_RS04860 PF17850 CysA C-terminal regulatory domain RD03_RS04860 PF12857 TOBE-like domain RD03_RS04865 PF01507 Phosphoadenosine phosphosulfate reductase family RD03_RS04870 PF01507 Phosphoadenosine phosphosulfate reductase family RD03_RS04880 PF04055 Radical SAM superfamily RD03_RS04895 PF01245 Ribosomal protein L19 RD03_RS04900 PF00293 NUDIX domain RD03_RS04910 PF00248 Aldo/keto reductase family RD03_RS04920 PF07690 Major Facilitator Superfamily RD03_RS04925 PF04345 Chorismate lyase RD03_RS04930 PF00849 RNA pseudouridylate synthase RD03_RS04930 PF01479 S4 domain RD03_RS04935 PF03466 LysR substrate binding domain RD03_RS04935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS04940 PF00529 HlyD membrane-fusion protein of T1SS RD03_RS04940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD03_RS04945 PF00873 AcrB/AcrD/AcrF family RD03_RS04950 PF02321 Outer membrane efflux protein RD03_RS04960 PF02630 SCO1/SenC RD03_RS04965 PF01432 Peptidase family M3 RD03_RS04970 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD03_RS04970 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD03_RS04975 PF00072 Response regulator receiver domain RD03_RS04975 PF00196 Bacterial regulatory proteins, luxR family RD03_RS04980 PF00989 PAS fold RD03_RS04980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS04980 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS04985 PF00456 Transketolase, thiamine diphosphate binding domain RD03_RS04985 PF17831 Pyruvate dehydrogenase E1 component middle domain RD03_RS04990 PF02817 e3 binding domain RD03_RS04990 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD03_RS04990 PF00364 Biotin-requiring enzyme RD03_RS04995 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS04995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD03_RS05000 PF00669 Bacterial flagellin N-terminal helical region RD03_RS05000 PF00700 Bacterial flagellin C-terminal helical region RD03_RS05010 PF04452 RNA methyltransferase RD03_RS05015 PF00456 Transketolase, thiamine diphosphate binding domain RD03_RS05015 PF02779 Transketolase, pyrimidine binding domain RD03_RS05015 PF02780 Transketolase, C-terminal domain RD03_RS05020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD03_RS05020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RD03_RS05025 PF00162 Phosphoglycerate kinase RD03_RS05035 PF00871 Acetokinase family RD03_RS05040 PF01515 Phosphate acetyl/butaryl transferase RD03_RS05045 PF11339 Protein of unknown function (DUF3141) RD03_RS05050 PF14834 Glutathione S-transferase, C-terminal domain RD03_RS05050 PF02798 Glutathione S-transferase, N-terminal domain RD03_RS05070 PF01556 DnaJ C terminal domain RD03_RS05070 PF00226 DnaJ domain RD03_RS05080 PF03591 AzlC protein RD03_RS05090 PF00994 Probable molybdopterin binding domain RD03_RS05100 PF01551 Peptidase family M23 RD03_RS05100 PF01476 LysM domain RD03_RS05100 PF08525 Opacity-associated protein A N-terminal motif RD03_RS05110 PF01176 Translation initiation factor 1A / IF-1 RD03_RS05120 PF04539 Sigma-70 region 3 RD03_RS05120 PF04545 Sigma-70, region 4 RD03_RS05120 PF04542 Sigma-70 region 2 RD03_RS05125 PF05247 Flagellar transcriptional activator (FlhD) RD03_RS05130 PF05280 Flagellar transcriptional activator (FlhC) RD03_RS05135 PF01618 MotA/TolQ/ExbB proton channel family RD03_RS05140 PF00691 OmpA family RD03_RS05140 PF13677 Membrane MotB of proton-channel complex MotA/MotB RD03_RS05145 PF00072 Response regulator receiver domain RD03_RS05150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS05150 PF01627 Hpt domain RD03_RS05150 PF02895 Signal transducing histidine kinase, homodimeric domain RD03_RS05150 PF01584 CheW-like domain RD03_RS05150 PF09078 CheY binding RD03_RS05155 PF01584 CheW-like domain RD03_RS05160 PF00672 HAMP domain RD03_RS05160 PF02203 Tar ligand binding domain homologue RD03_RS05160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD03_RS05170 PF00072 Response regulator receiver domain RD03_RS05170 PF01339 CheB methylesterase RD03_RS05175 PF00072 Response regulator receiver domain RD03_RS05180 PF04344 Chemotaxis phosphatase, CheZ RD03_RS05205 PF00248 Aldo/keto reductase family RD03_RS05210 PF00795 Carbon-nitrogen hydrolase RD03_RS05215 PF03471 Transporter associated domain RD03_RS05215 PF00571 CBS domain RD03_RS05220 PF02130 Uncharacterized protein family UPF0054 RD03_RS05225 PF02562 PhoH-like protein RD03_RS05230 PF04055 Radical SAM superfamily RD03_RS05230 PF01938 TRAM domain RD03_RS05230 PF00919 Uncharacterized protein family UPF0004 RD03_RS05245 PF02355 Protein export membrane protein RD03_RS05245 PF07549 SecD/SecF GG Motif RD03_RS05250 PF07549 SecD/SecF GG Motif RD03_RS05250 PF02355 Protein export membrane protein RD03_RS05250 PF13721 SecD export protein N-terminal TM region RD03_RS05255 PF02699 Preprotein translocase subunit RD03_RS05260 PF01702 Queuine tRNA-ribosyltransferase RD03_RS05265 PF02547 Queuosine biosynthesis protein RD03_RS05270 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RD03_RS05285 PF03212 Pertactin RD03_RS05285 PF03797 Autotransporter beta-domain RD03_RS05290 PF10414 Sirohaem synthase dimerisation region RD03_RS05290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD03_RS05290 PF14824 Sirohaem biosynthesis protein central RD03_RS05315 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RD03_RS05320 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RD03_RS05320 PF01464 Transglycosylase SLT domain RD03_RS05325 PF00155 Aminotransferase class I and II RD03_RS05335 PF00390 Malic enzyme, N-terminal domain RD03_RS05335 PF01515 Phosphate acetyl/butaryl transferase RD03_RS05335 PF03949 Malic enzyme, NAD binding domain RD03_RS05345 PF01337 Barstar (barnase inhibitor) RD03_RS05365 PF00005 ABC transporter RD03_RS05370 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS05375 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS05380 PF12849 PBP superfamily domain RD03_RS05385 PF13089 Polyphosphate kinase N-terminal domain RD03_RS05385 PF17941 Polyphosphate kinase C-terminal domain 1 RD03_RS05385 PF13090 Polyphosphate kinase C-terminal domain 2 RD03_RS05385 PF02503 Polyphosphate kinase middle domain RD03_RS05390 PF02541 Ppx/GppA phosphatase family RD03_RS05400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD03_RS05400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD03_RS05400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD03_RS05400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD03_RS05405 PF00809 Pterin binding enzyme RD03_RS05410 PF01434 Peptidase family M41 RD03_RS05410 PF06480 FtsH Extracellular RD03_RS05410 PF17862 AAA+ lid domain RD03_RS05410 PF00004 ATPase family associated with various cellular activities (AAA) RD03_RS05415 PF01728 FtsJ-like methyltransferase RD03_RS05420 PF01985 CRS1 / YhbY (CRM) domain RD03_RS05440 PF01636 Phosphotransferase enzyme family RD03_RS05445 PF01207 Dihydrouridine synthase (Dus) RD03_RS05460 PF03631 Virulence factor BrkB RD03_RS05470 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RD03_RS05475 PF00486 Transcriptional regulatory protein, C terminal RD03_RS05475 PF00072 Response regulator receiver domain RD03_RS05480 PF07689 KaiB domain RD03_RS05480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS05480 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS05490 PF00005 ABC transporter RD03_RS05490 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD03_RS05510 PF00005 ABC transporter RD03_RS05515 PF00501 AMP-binding enzyme RD03_RS05520 PF00440 Bacterial regulatory proteins, tetR family RD03_RS05520 PF17932 Tetracyclin repressor-like, C-terminal domain RD03_RS05530 PF00152 tRNA synthetases class II (D, K and N) RD03_RS05530 PF01336 OB-fold nucleic acid binding domain RD03_RS05535 PF00106 short chain dehydrogenase RD03_RS05540 PF00472 RF-1 domain RD03_RS05540 PF03462 PCRF domain RD03_RS05545 PF02272 DHHA1 domain RD03_RS05545 PF17768 RecJ OB domain RD03_RS05545 PF01368 DHH family RD03_RS05555 PF02687 FtsX-like permease family RD03_RS05555 PF12704 MacB-like periplasmic core domain RD03_RS05560 PF00005 ABC transporter RD03_RS05565 PF01026 TatD related DNase RD03_RS05600 PF02811 PHP domain RD03_RS05605 PF03449 Transcription elongation factor, N-terminal RD03_RS05605 PF01272 Transcription elongation factor, GreA/GreB, C-term RD03_RS05615 PF16970 Type-1 fimbrial protein, A RD03_RS05620 PF01515 Phosphate acetyl/butaryl transferase RD03_RS05620 PF03949 Malic enzyme, NAD binding domain RD03_RS05620 PF00390 Malic enzyme, N-terminal domain RD03_RS05625 PF00456 Transketolase, thiamine diphosphate binding domain RD03_RS05625 PF17831 Pyruvate dehydrogenase E1 component middle domain RD03_RS05630 PF01037 Lrp/AsnC ligand binding domain RD03_RS05635 PF03169 OPT oligopeptide transporter protein RD03_RS05640 PF03169 OPT oligopeptide transporter protein RD03_RS05645 PF16078 2-oxoglutarate dehydrogenase N-terminus RD03_RS05645 PF00676 Dehydrogenase E1 component RD03_RS05645 PF16870 2-oxoglutarate dehydrogenase C-terminal RD03_RS05645 PF02779 Transketolase, pyrimidine binding domain RD03_RS05650 PF02817 e3 binding domain RD03_RS05650 PF00364 Biotin-requiring enzyme RD03_RS05650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD03_RS05655 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS05655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD03_RS05660 PF03969 AFG1-like ATPase RD03_RS05670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS05670 PF03466 LysR substrate binding domain RD03_RS05680 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS05700 PF00579 tRNA synthetases class I (W and Y) RD03_RS05705 PF17674 HHH domain RD03_RS05705 PF00575 S1 RNA binding domain RD03_RS05705 PF09371 Tex-like protein N-terminal domain RD03_RS05705 PF16921 Tex protein YqgF-like domain RD03_RS05710 PF04851 Type III restriction enzyme, res subunit RD03_RS05710 PF13307 Helicase C-terminal domain RD03_RS05715 PF13525 Outer membrane lipoprotein RD03_RS05720 PF00849 RNA pseudouridylate synthase RD03_RS05720 PF01479 S4 domain RD03_RS05725 PF02578 Multi-copper polyphenol oxidoreductase laccase RD03_RS05730 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RD03_RS05735 PF00106 short chain dehydrogenase RD03_RS05740 PF07879 PHB/PHA accumulation regulator DNA-binding domain RD03_RS05740 PF05233 PHB accumulation regulatory domain RD03_RS05745 PF10634 Fe2+ transport protein RD03_RS05755 PF03239 Iron permease FTR1 family RD03_RS05765 PF02567 Phenazine biosynthesis-like protein RD03_RS05785 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS05790 PF13378 Enolase C-terminal domain-like RD03_RS05790 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RD03_RS05795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS05795 PF03466 LysR substrate binding domain RD03_RS05805 PF07690 Major Facilitator Superfamily RD03_RS05820 PF17676 LD-carboxypeptidase C-terminal domain RD03_RS05820 PF02016 LD-carboxypeptidase N-terminal domain RD03_RS05830 PF03466 LysR substrate binding domain RD03_RS05830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS05835 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD03_RS05835 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD03_RS05840 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS05865 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD03_RS05890 PF00005 ABC transporter RD03_RS05895 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS05900 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS05905 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS05910 PF00155 Aminotransferase class I and II RD03_RS05940 PF02627 Carboxymuconolactone decarboxylase family RD03_RS05945 PF04542 Sigma-70 region 2 RD03_RS05945 PF12680 SnoaL-like domain RD03_RS05945 PF08281 Sigma-70, region 4 RD03_RS05955 PF12843 Putative quorum-sensing-regulated virulence factor RD03_RS05960 PF00293 NUDIX domain RD03_RS05975 PF13545 Crp-like helix-turn-helix domain RD03_RS05975 PF00027 Cyclic nucleotide-binding domain RD03_RS05980 PF17871 AAA lid domain RD03_RS05980 PF10431 C-terminal, D2-small domain, of ClpB protein RD03_RS05980 PF07724 AAA domain (Cdc48 subfamily) RD03_RS05980 PF00004 ATPase family associated with various cellular activities (AAA) RD03_RS05980 PF02861 Clp amino terminal domain, pathogenicity island component RD03_RS05990 PF03212 Pertactin RD03_RS05990 PF03797 Autotransporter beta-domain RD03_RS05995 PF03797 Autotransporter beta-domain RD03_RS05995 PF03212 Pertactin RD03_RS06010 PF09370 Phosphoenolpyruvate hydrolase-like RD03_RS06020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS06020 PF03466 LysR substrate binding domain RD03_RS06025 PF07969 Amidohydrolase family RD03_RS06035 PF00175 Oxidoreductase NAD-binding domain RD03_RS06035 PF00258 Flavodoxin RD03_RS06035 PF00667 FAD binding domain RD03_RS06040 PF02424 ApbE family RD03_RS06060 PF00005 ABC transporter RD03_RS06065 PF01061 ABC-2 type transporter RD03_RS06075 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD03_RS06080 PF01593 Flavin containing amine oxidoreductase RD03_RS06080 PF01593 Flavin containing amine oxidoreductase RD03_RS06095 PF00842 Alanine racemase, C-terminal domain RD03_RS06095 PF01168 Alanine racemase, N-terminal domain RD03_RS06115 PF04545 Sigma-70, region 4 RD03_RS06115 PF04542 Sigma-70 region 2 RD03_RS06120 PF12450 von Willebrand factor RD03_RS06120 PF12034 Domain of unknown function (DUF3520) RD03_RS06120 PF00092 von Willebrand factor type A domain RD03_RS06125 PF18073 Rubredoxin metal binding domain RD03_RS06140 PF01554 MatE RD03_RS06150 PF01197 Ribosomal protein L31 RD03_RS06155 PF03301 Tryptophan 2,3-dioxygenase RD03_RS06160 PF04199 Putative cyclase RD03_RS06165 PF04002 RadC-like JAB domain RD03_RS06170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD03_RS06175 PF02401 LytB protein RD03_RS06180 PF02798 Glutathione S-transferase, N-terminal domain RD03_RS06180 PF14497 Glutathione S-transferase, C-terminal domain RD03_RS06200 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD03_RS06200 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD03_RS06205 PF00881 Nitroreductase family RD03_RS06210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS06210 PF03466 LysR substrate binding domain RD03_RS06220 PF04079 Segregation and condensation complex subunit ScpB RD03_RS06225 PF00849 RNA pseudouridylate synthase RD03_RS06225 PF01479 S4 domain RD03_RS06230 PF17384 RimP C-terminal SH3 domain RD03_RS06230 PF02576 RimP N-terminal domain RD03_RS06235 PF08529 NusA N-terminal domain RD03_RS06235 PF13184 NusA-like KH domain RD03_RS06240 PF11987 Translation-initiation factor 2 RD03_RS06240 PF00009 Elongation factor Tu GTP binding domain RD03_RS06240 PF08364 Bacterial translation initiation factor IF-2 associated region RD03_RS06240 PF04760 Translation initiation factor IF-2, N-terminal region RD03_RS06245 PF02033 Ribosome-binding factor A RD03_RS06250 PF16198 tRNA pseudouridylate synthase B C-terminal domain RD03_RS06250 PF01509 TruB family pseudouridylate synthase (N terminal domain) RD03_RS06255 PF00679 Elongation factor G C-terminus RD03_RS06255 PF03144 Elongation factor Tu domain 2 RD03_RS06255 PF00009 Elongation factor Tu GTP binding domain RD03_RS06270 PF03641 Possible lysine decarboxylase RD03_RS06275 PF01612 3'-5' exonuclease RD03_RS06275 PF00476 DNA polymerase family A RD03_RS06275 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RD03_RS06275 PF01367 5'-3' exonuclease, C-terminal SAM fold RD03_RS06285 PF01738 Dienelactone hydrolase family RD03_RS06290 PF02690 Na+/Pi-cotransporter RD03_RS06295 PF03315 Serine dehydratase beta chain RD03_RS06295 PF03313 Serine dehydratase alpha chain RD03_RS06300 PF02677 Epoxyqueuosine reductase QueH RD03_RS06305 PF08335 GlnD PII-uridylyltransferase RD03_RS06305 PF03710 Glutamate-ammonia ligase adenylyltransferase RD03_RS06315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD03_RS06315 PF07497 Rho termination factor, RNA-binding domain RD03_RS06315 PF07498 Rho termination factor, N-terminal domain RD03_RS06320 PF00085 Thioredoxin RD03_RS06325 PF01751 Toprim domain RD03_RS06325 PF00204 DNA gyrase B RD03_RS06325 PF00986 DNA gyrase B subunit, carboxyl terminus RD03_RS06325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS06335 PF00521 DNA gyrase/topoisomerase IV, subunit A RD03_RS06340 PF04235 Protein of unknown function (DUF418) RD03_RS06350 PF00892 EamA-like transporter family RD03_RS06365 PF01177 Asp/Glu/Hydantoin racemase RD03_RS06370 PF00005 ABC transporter RD03_RS06375 PF00005 ABC transporter RD03_RS06375 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD03_RS06380 PF02653 Branched-chain amino acid transport system / permease component RD03_RS06380 PF11862 Domain of unknown function (DUF3382) RD03_RS06385 PF02653 Branched-chain amino acid transport system / permease component RD03_RS06390 PF13458 Periplasmic binding protein RD03_RS06400 PF02592 Putative vitamin uptake transporter RD03_RS06405 PF03807 NADP oxidoreductase coenzyme F420-dependent RD03_RS06405 PF14748 Pyrroline-5-carboxylate reductase dimerisation RD03_RS06410 PF13416 Bacterial extracellular solute-binding protein RD03_RS06415 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS06420 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS06425 PF17912 MalK OB fold domain RD03_RS06425 PF00005 ABC transporter RD03_RS06430 PF13458 Periplasmic binding protein RD03_RS06450 PF04241 Protein of unknown function (DUF423) RD03_RS06460 PF08808 RES domain RD03_RS06465 PF03180 NLPA lipoprotein RD03_RS06470 PF01070 FMN-dependent dehydrogenase RD03_RS06475 PF02666 Phosphatidylserine decarboxylase RD03_RS06490 PF10437 Bacterial lipoate protein ligase C-terminus RD03_RS06490 PF03099 Biotin/lipoate A/B protein ligase family RD03_RS06505 PF00043 Glutathione S-transferase, C-terminal domain RD03_RS06505 PF02798 Glutathione S-transferase, N-terminal domain RD03_RS06510 PF00255 Glutathione peroxidase RD03_RS06530 PF02515 CoA-transferase family III RD03_RS06535 PF03960 ArsC family RD03_RS06540 PF00578 AhpC/TSA family RD03_RS06560 PF07681 DoxX RD03_RS06565 PF16485 Protealysin propeptide RD03_RS06565 PF02868 Thermolysin metallopeptidase, alpha-helical domain RD03_RS06565 PF01447 Thermolysin metallopeptidase, catalytic domain RD03_RS06575 PF00248 Aldo/keto reductase family RD03_RS06580 PF00582 Universal stress protein family RD03_RS06595 PF00155 Aminotransferase class I and II RD03_RS06595 PF00392 Bacterial regulatory proteins, gntR family RD03_RS06600 PF01168 Alanine racemase, N-terminal domain RD03_RS06605 PF08543 Phosphomethylpyrimidine kinase RD03_RS06615 PF00128 Alpha amylase, catalytic domain RD03_RS06620 PF02446 4-alpha-glucanotransferase RD03_RS06630 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD03_RS06630 PF11941 Domain of unknown function (DUF3459) RD03_RS06630 PF00128 Alpha amylase, catalytic domain RD03_RS06635 PF00128 Alpha amylase, catalytic domain RD03_RS06635 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD03_RS06640 PF02806 Alpha amylase, C-terminal all-beta domain RD03_RS06640 PF00128 Alpha amylase, catalytic domain RD03_RS06640 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD03_RS06645 PF16657 Maltogenic Amylase, C-terminal domain RD03_RS06645 PF00128 Alpha amylase, catalytic domain RD03_RS06650 PF11896 Domain of unknown function (DUF3416) RD03_RS06650 PF00128 Alpha amylase, catalytic domain RD03_RS06680 PF03706 Lysylphosphatidylglycerol synthase TM region RD03_RS06695 PF13091 PLD-like domain RD03_RS06700 PF03372 Endonuclease/Exonuclease/phosphatase family RD03_RS06705 PF03551 Transcriptional regulator PadR-like family RD03_RS06715 PF12951 Passenger-associated-transport-repeat RD03_RS06725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS06725 PF03466 LysR substrate binding domain RD03_RS06735 PF03328 HpcH/HpaI aldolase/citrate lyase family RD03_RS06740 PF00392 Bacterial regulatory proteins, gntR family RD03_RS06740 PF07729 FCD domain RD03_RS06745 PF13380 CoA binding domain RD03_RS06745 PF13607 Succinyl-CoA ligase like flavodoxin domain RD03_RS06750 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS06760 PF02515 CoA-transferase family III RD03_RS06765 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS06770 PF00356 Bacterial regulatory proteins, lacI family RD03_RS06775 PF00694 Aconitase C-terminal domain RD03_RS06785 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS06790 PF13378 Enolase C-terminal domain-like RD03_RS06795 PF08546 Ketopantoate reductase PanE/ApbA C terminal RD03_RS06795 PF02558 Ketopantoate reductase PanE/ApbA RD03_RS06805 PF00005 ABC transporter RD03_RS06810 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS06815 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS06825 PF01312 FlhB HrpN YscU SpaS Family RD03_RS06835 PF00448 SRP54-type protein, GTPase domain RD03_RS06845 PF04316 Anti-sigma-28 factor, FlgM RD03_RS06855 PF00460 Flagella basal body rod protein RD03_RS06860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD03_RS06860 PF00460 Flagella basal body rod protein RD03_RS06865 PF13861 FlgD Tudor-like domain RD03_RS06865 PF03963 Flagellar hook capping protein - N-terminal region RD03_RS06865 PF13860 FlgD Ig-like domain RD03_RS06870 PF07559 Flagellar basal body protein FlaE RD03_RS06870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD03_RS06870 PF00460 Flagella basal body rod protein RD03_RS06875 PF00460 Flagella basal body rod protein RD03_RS06875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD03_RS06880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD03_RS06880 PF00460 Flagella basal body rod protein RD03_RS06885 PF02107 Flagellar L-ring protein RD03_RS06890 PF02119 Flagellar P-ring protein RD03_RS06895 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RD03_RS06895 PF10135 Rod binding protein RD03_RS06900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD03_RS06900 PF00460 Flagella basal body rod protein RD03_RS06905 PF00669 Bacterial flagellin N-terminal helical region RD03_RS06910 PF00672 HAMP domain RD03_RS06910 PF02203 Tar ligand binding domain homologue RD03_RS06910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD03_RS06915 PF02203 Tar ligand binding domain homologue RD03_RS06915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD03_RS06915 PF00672 HAMP domain RD03_RS06920 PF08447 PAS fold RD03_RS06920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD03_RS06930 PF01311 Bacterial export proteins, family 1 RD03_RS06935 PF01313 Bacterial export proteins, family 3 RD03_RS06940 PF00813 FliP family RD03_RS06945 PF04347 Flagellar biosynthesis protein, FliO RD03_RS06950 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD03_RS06950 PF16973 Flagellar motor switch protein FliN N-terminal RD03_RS06955 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD03_RS06955 PF02154 Flagellar motor switch protein FliM RD03_RS06960 PF03748 Flagellar basal body-associated protein FliL RD03_RS06985 PF18269 T3SS EscN ATPase C-terminal domain RD03_RS06985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD03_RS06995 PF01706 FliG C-terminal domain RD03_RS06995 PF14841 FliG middle domain RD03_RS06995 PF14842 FliG N-terminal domain RD03_RS07000 PF08345 Flagellar M-ring protein C-terminal RD03_RS07000 PF01514 Secretory protein of YscJ/FliF family RD03_RS07005 PF02049 Flagellar hook-basal body complex protein FliE RD03_RS07015 PF01312 FlhB HrpN YscU SpaS Family RD03_RS07035 PF02561 Flagellar protein FliS RD03_RS07040 PF02465 Flagellar hook-associated protein 2 N-terminus RD03_RS07040 PF07196 Flagellin hook IN motif RD03_RS07040 PF07195 Flagellar hook-associated protein 2 C-terminus RD03_RS07050 PF08245 Mur ligase middle domain RD03_RS07050 PF02875 Mur ligase family, glutamate ligase domain RD03_RS07065 PF00156 Phosphoribosyl transferase domain RD03_RS07080 PF08335 GlnD PII-uridylyltransferase RD03_RS07080 PF01966 HD domain RD03_RS07080 PF01909 Nucleotidyltransferase domain RD03_RS07085 PF00557 Metallopeptidase family M24 RD03_RS07090 PF00318 Ribosomal protein S2 RD03_RS07095 PF00889 Elongation factor TS RD03_RS07100 PF00696 Amino acid kinase family RD03_RS07105 PF01765 Ribosome recycling factor RD03_RS07110 PF01255 Putative undecaprenyl diphosphate synthase RD03_RS07120 PF13288 DXP reductoisomerase C-terminal domain RD03_RS07120 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RD03_RS07120 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RD03_RS07125 PF17820 PDZ domain RD03_RS07125 PF02163 Peptidase family M50 RD03_RS07130 PF01103 Surface antigen RD03_RS07130 PF07244 Surface antigen variable number repeat RD03_RS07135 PF03938 Outer membrane protein (OmpH-like) RD03_RS07140 PF00132 Bacterial transferase hexapeptide (six repeats) RD03_RS07140 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RD03_RS07145 PF07977 FabA-like domain RD03_RS07150 PF00132 Bacterial transferase hexapeptide (six repeats) RD03_RS07150 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RD03_RS07155 PF02684 Lipid-A-disaccharide synthetase RD03_RS07160 PF01351 Ribonuclease HII RD03_RS07165 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD03_RS07165 PF00588 SpoU rRNA Methylase family RD03_RS07170 PF03618 Kinase/pyrophosphorylase RD03_RS07175 PF00391 PEP-utilising enzyme, mobile domain RD03_RS07175 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RD03_RS07175 PF02896 PEP-utilising enzyme, TIM barrel domain RD03_RS07180 PF00117 Glutamine amidotransferase class-I RD03_RS07180 PF00958 GMP synthase C terminal domain RD03_RS07195 PF01145 SPFH domain / Band 7 family RD03_RS07195 PF16200 C-terminal region of band_7 RD03_RS07200 PF00990 Diguanylate cyclase, GGDEF domain RD03_RS07200 PF08448 PAS fold RD03_RS07205 PF01668 SmpB protein RD03_RS07215 PF03364 Polyketide cyclase / dehydrase and lipid transport RD03_RS07220 PF03658 RnfH family Ubiquitin RD03_RS07225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS07225 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS07225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS07230 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS07235 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD03_RS07235 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD03_RS07260 PF00923 Transaldolase/Fructose-6-phosphate aldolase RD03_RS07265 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RD03_RS07265 PF00117 Glutamine amidotransferase class-I RD03_RS07270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD03_RS07270 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RD03_RS07270 PF02142 MGS-like domain RD03_RS07280 PF00300 Histidine phosphatase superfamily (branch 1) RD03_RS07285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS07285 PF03466 LysR substrate binding domain RD03_RS07290 PF00005 ABC transporter RD03_RS07290 PF08402 TOBE domain RD03_RS07295 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS07310 PF00563 EAL domain RD03_RS07310 PF00990 Diguanylate cyclase, GGDEF domain RD03_RS07310 PF08448 PAS fold RD03_RS07310 PF08447 PAS fold RD03_RS07315 PF01264 Chorismate synthase RD03_RS07320 PF01435 Peptidase family M48 RD03_RS07325 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RD03_RS07330 PF00994 Probable molybdopterin binding domain RD03_RS07330 PF03453 MoeA N-terminal region (domain I and II) RD03_RS07330 PF03454 MoeA C-terminal region (domain IV) RD03_RS07335 PF12804 MobA-like NTP transferase domain RD03_RS07340 PF10609 NUBPL iron-transfer P-loop NTPase RD03_RS07370 PF01568 Molydopterin dinucleotide binding domain RD03_RS07370 PF00384 Molybdopterin oxidoreductase RD03_RS07370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RD03_RS07375 PF13247 4Fe-4S dicluster domain RD03_RS07400 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS07405 PF00005 ABC transporter RD03_RS07410 PF12849 PBP superfamily domain RD03_RS07415 PF00330 Aconitase family (aconitate hydratase) RD03_RS07420 PF00694 Aconitase C-terminal domain RD03_RS07425 PF00180 Isocitrate/isopropylmalate dehydrogenase RD03_RS07430 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD03_RS07430 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD03_RS07440 PF01416 tRNA pseudouridine synthase RD03_RS07445 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS07455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD03_RS07460 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RD03_RS07475 PF03883 Peroxide stress protein YaaA RD03_RS07495 PF00990 Diguanylate cyclase, GGDEF domain RD03_RS07505 PF06969 HemN C-terminal domain RD03_RS07505 PF04055 Radical SAM superfamily RD03_RS07515 PF00196 Bacterial regulatory proteins, luxR family RD03_RS07520 PF02824 TGS domain RD03_RS07520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD03_RS07520 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD03_RS07520 PF03129 Anticodon binding domain RD03_RS07525 PF00707 Translation initiation factor IF-3, C-terminal domain RD03_RS07525 PF05198 Translation initiation factor IF-3, N-terminal domain RD03_RS07530 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RD03_RS07530 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RD03_RS07540 PF00381 PTS HPr component phosphorylation site RD03_RS07545 PF05524 PEP-utilising enzyme, N-terminal RD03_RS07545 PF00391 PEP-utilising enzyme, mobile domain RD03_RS07545 PF02896 PEP-utilising enzyme, TIM barrel domain RD03_RS07555 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD03_RS07565 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS07570 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS07575 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS07580 PF00005 ABC transporter RD03_RS07595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD03_RS07595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD03_RS07605 PF02293 AmiS/UreI family transporter RD03_RS07610 PF03069 Acetamidase/Formamidase family RD03_RS07625 PF01116 Fructose-bisphosphate aldolase class-II RD03_RS07635 PF01259 SAICAR synthetase RD03_RS07640 PF15723 Motility quorum-sensing regulator, toxin of MqsA RD03_RS07645 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD03_RS07650 PF02600 Disulfide bond formation protein DsbB RD03_RS07655 PF00731 AIR carboxylase RD03_RS07660 PF02222 ATP-grasp domain RD03_RS07660 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RD03_RS07665 PF03481 Putative GTP-binding controlling metal-binding RD03_RS07665 PF01300 Telomere recombination RD03_RS07670 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS07675 PF09339 IclR helix-turn-helix domain RD03_RS07675 PF01614 Bacterial transcriptional regulator RD03_RS07680 PF00491 Arginase family RD03_RS07685 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS07690 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS07695 PF00005 ABC transporter RD03_RS07700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD03_RS07700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD03_RS07710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS07710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS07710 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS07715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD03_RS07715 PF00205 Thiamine pyrophosphate enzyme, central domain RD03_RS07715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD03_RS07720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS07720 PF03466 LysR substrate binding domain RD03_RS07725 PF02899 Phage integrase, N-terminal SAM-like domain RD03_RS07725 PF00589 Phage integrase family RD03_RS07730 PF04073 Aminoacyl-tRNA editing domain RD03_RS07735 PF01174 SNO glutamine amidotransferase family RD03_RS07750 PF00768 D-alanyl-D-alanine carboxypeptidase RD03_RS07760 PF07690 Major Facilitator Superfamily RD03_RS07770 PF00580 UvrD/REP helicase N-terminal domain RD03_RS07770 PF12705 PD-(D/E)XK nuclease superfamily RD03_RS07770 PF13361 UvrD-like helicase C-terminal domain RD03_RS07780 PF12170 DNA polymerase III tau subunit V interacting with alpha RD03_RS07780 PF12169 DNA polymerase III subunits gamma and tau domain III RD03_RS07780 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RD03_RS07785 PF02575 YbaB/EbfC DNA-binding family RD03_RS07790 PF02132 RecR protein RD03_RS07790 PF13662 Toprim domain RD03_RS07810 PF04228 Putative neutral zinc metallopeptidase RD03_RS07815 PF01300 Telomere recombination RD03_RS07850 PF03358 NADPH-dependent FMN reductase RD03_RS07855 PF07311 Dodecin RD03_RS07860 PF00488 MutS domain V RD03_RS07860 PF05190 MutS family domain IV RD03_RS07860 PF05192 MutS domain III RD03_RS07860 PF05188 MutS domain II RD03_RS07860 PF01624 MutS domain I RD03_RS07865 PF08007 Cupin superfamily protein RD03_RS07870 PF16970 Type-1 fimbrial protein, A RD03_RS07875 PF06804 NlpB/DapX lipoprotein RD03_RS07880 PF00701 Dihydrodipicolinate synthetase family RD03_RS07885 PF02163 Peptidase family M50 RD03_RS07895 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS07900 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS07905 PF00005 ABC transporter RD03_RS07910 PF13291 ACT domain RD03_RS07910 PF04607 Region found in RelA / SpoT proteins RD03_RS07910 PF02824 TGS domain RD03_RS07915 PF01192 RNA polymerase Rpb6 RD03_RS07920 PF00625 Guanylate kinase RD03_RS07925 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD03_RS07930 PF00034 Cytochrome c RD03_RS07940 PF00877 NlpC/P60 family RD03_RS07945 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RD03_RS07945 PF01048 Phosphorylase superfamily RD03_RS07965 PF03755 YicC-like family, N-terminal region RD03_RS07965 PF08340 Domain of unknown function (DUF1732) RD03_RS07970 PF01138 3' exoribonuclease family, domain 1 RD03_RS07970 PF03725 3' exoribonuclease family, domain 2 RD03_RS07980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS07980 PF03466 LysR substrate binding domain RD03_RS07985 PF00672 HAMP domain RD03_RS07985 PF00990 Diguanylate cyclase, GGDEF domain RD03_RS07985 PF00563 EAL domain RD03_RS07985 PF17154 Gammaproteobacterial periplasmic sensor domain RD03_RS07990 PF01725 Ham1 family RD03_RS08000 PF04055 Radical SAM superfamily RD03_RS08000 PF06969 HemN C-terminal domain RD03_RS08005 PF03951 Glutamine synthetase, beta-Grasp domain RD03_RS08005 PF00120 Glutamine synthetase, catalytic domain RD03_RS08010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS08010 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS08010 PF00989 PAS fold RD03_RS08015 PF00072 Response regulator receiver domain RD03_RS08015 PF00158 Sigma-54 interaction domain RD03_RS08015 PF02954 Bacterial regulatory protein, Fis family RD03_RS08020 PF03466 LysR substrate binding domain RD03_RS08020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS08025 PF17954 Quercetinase C-terminal cupin domain RD03_RS08025 PF02678 Pirin RD03_RS08030 PF05726 Pirin C-terminal cupin domain RD03_RS08030 PF02678 Pirin RD03_RS08040 PF08402 TOBE domain RD03_RS08040 PF00005 ABC transporter RD03_RS08045 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS08055 PF00970 Oxidoreductase FAD-binding domain RD03_RS08055 PF00175 Oxidoreductase NAD-binding domain RD03_RS08060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS08060 PF03466 LysR substrate binding domain RD03_RS08070 PF00248 Aldo/keto reductase family RD03_RS08090 PF01042 Endoribonuclease L-PSP RD03_RS08095 PF00271 Helicase conserved C-terminal domain RD03_RS08095 PF17191 RecG wedge domain RD03_RS08095 PF00270 DEAD/DEAH box helicase RD03_RS08100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS08100 PF03466 LysR substrate binding domain RD03_RS08105 PF03466 LysR substrate binding domain RD03_RS08105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS08110 PF00171 Aldehyde dehydrogenase family RD03_RS08115 PF00210 Ferritin-like domain RD03_RS08140 PF00005 ABC transporter RD03_RS08150 PF00534 Glycosyl transferases group 1 RD03_RS08160 PF02563 Polysaccharide biosynthesis/export protein RD03_RS08165 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD03_RS08165 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD03_RS08165 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD03_RS08170 PF01370 NAD dependent epimerase/dehydratase family RD03_RS08175 PF05159 Capsule polysaccharide biosynthesis protein RD03_RS08180 PF05159 Capsule polysaccharide biosynthesis protein RD03_RS08190 PF00106 short chain dehydrogenase RD03_RS08205 PF14759 Reductase C-terminal RD03_RS08205 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS08215 PF14759 Reductase C-terminal RD03_RS08215 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS08225 PF00005 ABC transporter RD03_RS08230 PF00005 ABC transporter RD03_RS08230 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD03_RS08235 PF02653 Branched-chain amino acid transport system / permease component RD03_RS08235 PF11862 Domain of unknown function (DUF3382) RD03_RS08245 PF03741 Integral membrane protein TerC family RD03_RS08255 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS08270 PF17863 AAA lid domain RD03_RS08270 PF07726 ATPase family associated with various cellular activities (AAA) RD03_RS08300 PF00884 Sulfatase RD03_RS08325 PF00196 Bacterial regulatory proteins, luxR family RD03_RS08325 PF00072 Response regulator receiver domain RD03_RS08330 PF00082 Subtilase family RD03_RS08330 PF12951 Passenger-associated-transport-repeat RD03_RS08330 PF03797 Autotransporter beta-domain RD03_RS08335 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD03_RS08340 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RD03_RS08345 PF02798 Glutathione S-transferase, N-terminal domain RD03_RS08345 PF00043 Glutathione S-transferase, C-terminal domain RD03_RS08350 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD03_RS08360 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS08370 PF01070 FMN-dependent dehydrogenase RD03_RS08375 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD03_RS08390 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS08395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS08395 PF03466 LysR substrate binding domain RD03_RS08400 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS08425 PF03358 NADPH-dependent FMN reductase RD03_RS08450 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS08460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS08460 PF03466 LysR substrate binding domain RD03_RS08475 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS08480 PF00361 Proton-conducting membrane transporter RD03_RS08480 PF13244 Domain of unknown function (DUF4040) RD03_RS08480 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD03_RS08480 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RD03_RS08485 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD03_RS08490 PF00361 Proton-conducting membrane transporter RD03_RS08495 PF01899 Na+/H+ ion antiporter subunit RD03_RS08500 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RD03_RS08525 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD03_RS08530 PF17676 LD-carboxypeptidase C-terminal domain RD03_RS08530 PF02016 LD-carboxypeptidase N-terminal domain RD03_RS08535 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS08540 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD03_RS08550 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS08555 PF00005 ABC transporter RD03_RS08555 PF12848 ABC transporter RD03_RS08560 PF00005 ABC transporter RD03_RS08590 PF00970 Oxidoreductase FAD-binding domain RD03_RS08590 PF00042 Globin RD03_RS08590 PF00175 Oxidoreductase NAD-binding domain RD03_RS08595 PF02082 Transcriptional regulator RD03_RS08600 PF01266 FAD dependent oxidoreductase RD03_RS08615 PF01571 Aminomethyltransferase folate-binding domain RD03_RS08620 PF02618 YceG-like family RD03_RS08625 PF02223 Thymidylate kinase RD03_RS08630 PF12169 DNA polymerase III subunits gamma and tau domain III RD03_RS08635 PF01026 TatD related DNase RD03_RS08650 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS08660 PF00005 ABC transporter RD03_RS08665 PF00491 Arginase family RD03_RS08670 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD03_RS08670 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD03_RS08675 PF00171 Aldehyde dehydrogenase family RD03_RS08680 PF07687 Peptidase dimerisation domain RD03_RS08680 PF01546 Peptidase family M20/M25/M40 RD03_RS08685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD03_RS08685 PF00205 Thiamine pyrophosphate enzyme, central domain RD03_RS08685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD03_RS08695 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD03_RS08695 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD03_RS08705 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS08705 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD03_RS08710 PF00392 Bacterial regulatory proteins, gntR family RD03_RS08710 PF07729 FCD domain RD03_RS08720 PF04343 Protein of unknown function, DUF488 RD03_RS08740 PF01425 Amidase RD03_RS08745 PF07286 Protein of unknown function (DUF1445) RD03_RS08755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS08755 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS08755 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS08755 PF00072 Response regulator receiver domain RD03_RS08755 PF00989 PAS fold RD03_RS08755 PF01627 Hpt domain RD03_RS08760 PF00072 Response regulator receiver domain RD03_RS08760 PF00196 Bacterial regulatory proteins, luxR family RD03_RS08765 PF13332 Hemagglutinin repeat RD03_RS08765 PF05860 haemagglutination activity domain RD03_RS08765 PF05594 Haemagluttinin repeat RD03_RS08765 PF13018 Extended Signal Peptide of Type V secretion system RD03_RS08770 PF16970 Type-1 fimbrial protein, A RD03_RS08775 PF02753 Pili assembly chaperone PapD, C-terminal domain RD03_RS08775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RD03_RS08780 PF13954 PapC N-terminal domain RD03_RS08780 PF13953 PapC C-terminal domain RD03_RS08780 PF00577 Outer membrane usher protein RD03_RS08785 PF00419 Fimbrial protein RD03_RS08790 PF08479 POTRA domain, ShlB-type RD03_RS08790 PF17287 POTRA domain RD03_RS08790 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD03_RS08805 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS08830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS08830 PF03466 LysR substrate binding domain RD03_RS08840 PF01968 Hydantoinase/oxoprolinase RD03_RS08840 PF05378 Hydantoinase/oxoprolinase N-terminal region RD03_RS08855 PF00924 Mechanosensitive ion channel RD03_RS08855 PF05552 Conserved TM helix RD03_RS08865 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS08870 PF00588 SpoU rRNA Methylase family RD03_RS08875 PF00459 Inositol monophosphatase family RD03_RS08880 PF03471 Transporter associated domain RD03_RS08880 PF03741 Integral membrane protein TerC family RD03_RS08885 PF02673 Bacitracin resistance protein BacA RD03_RS08890 PF00149 Calcineurin-like phosphoesterase RD03_RS08895 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RD03_RS08905 PF09190 DALR domain RD03_RS08905 PF01406 tRNA synthetases class I (C) catalytic domain RD03_RS08910 PF06029 AlkA N-terminal domain RD03_RS08910 PF02805 Metal binding domain of Ada RD03_RS08910 PF12833 Helix-turn-helix domain RD03_RS08910 PF00730 HhH-GPD superfamily base excision DNA repair protein RD03_RS08915 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RD03_RS08925 PF01171 PP-loop family RD03_RS08925 PF09179 TilS substrate binding domain RD03_RS08930 PF13840 ACT domain RD03_RS08930 PF01842 ACT domain RD03_RS08930 PF00696 Amino acid kinase family RD03_RS08955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD03_RS08955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD03_RS08960 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD03_RS08960 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD03_RS08965 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD03_RS08970 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS08975 PF00561 alpha/beta hydrolase fold RD03_RS08980 PF03447 Homoserine dehydrogenase, NAD binding domain RD03_RS08980 PF01958 Domain of unknown function DUF108 RD03_RS08995 PF03466 LysR substrate binding domain RD03_RS08995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS09015 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS09020 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS09025 PF00005 ABC transporter RD03_RS09025 PF08402 TOBE domain RD03_RS09035 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS09035 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD03_RS09040 PF01614 Bacterial transcriptional regulator RD03_RS09040 PF09339 IclR helix-turn-helix domain RD03_RS09045 PF13380 CoA binding domain RD03_RS09050 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS09055 PF01042 Endoribonuclease L-PSP RD03_RS09080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD03_RS09090 PF00535 Glycosyl transferase family 2 RD03_RS09095 PF01522 Polysaccharide deacetylase RD03_RS09095 PF14883 Hypothetical glycosyl hydrolase family 13 RD03_RS09115 PF12802 MarR family RD03_RS09130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD03_RS09130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD03_RS09130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD03_RS09130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD03_RS09135 PF00342 Phosphoglucose isomerase RD03_RS09140 PF00132 Bacterial transferase hexapeptide (six repeats) RD03_RS09150 PF02146 Sir2 family RD03_RS09155 PF00459 Inositol monophosphatase family RD03_RS09160 PF00171 Aldehyde dehydrogenase family RD03_RS09165 PF00202 Aminotransferase class-III RD03_RS09170 PF00392 Bacterial regulatory proteins, gntR family RD03_RS09170 PF00155 Aminotransferase class I and II RD03_RS09180 PF13361 UvrD-like helicase C-terminal domain RD03_RS09180 PF00580 UvrD/REP helicase N-terminal domain RD03_RS09185 PF01544 CorA-like Mg2+ transporter protein RD03_RS09195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS09200 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS09205 PF12911 N-terminal TM domain of oligopeptide transport permease C RD03_RS09205 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS09210 PF00005 ABC transporter RD03_RS09210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS09215 PF01047 MarR family RD03_RS09230 PF08479 POTRA domain, ShlB-type RD03_RS09230 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD03_RS09235 PF00990 Diguanylate cyclase, GGDEF domain RD03_RS09235 PF03707 Bacterial signalling protein N terminal repeat RD03_RS09235 PF00563 EAL domain RD03_RS09265 PF04972 BON domain RD03_RS09265 PF00263 Bacterial type II and III secretion system protein RD03_RS09265 PF13629 Pilus formation protein N terminal region RD03_RS09275 PF00437 Type II/IV secretion system protein RD03_RS09305 PF00072 Response regulator receiver domain RD03_RS09305 PF02954 Bacterial regulatory protein, Fis family RD03_RS09305 PF00158 Sigma-54 interaction domain RD03_RS09320 PF04542 Sigma-70 region 2 RD03_RS09320 PF08281 Sigma-70, region 4 RD03_RS09330 PF00034 Cytochrome c RD03_RS09335 PF08207 Elongation factor P (EF-P) KOW-like domain RD03_RS09335 PF01132 Elongation factor P (EF-P) OB domain RD03_RS09335 PF09285 Elongation factor P, C-terminal RD03_RS09350 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RD03_RS09355 PF00330 Aconitase family (aconitate hydratase) RD03_RS09355 PF00694 Aconitase C-terminal domain RD03_RS09365 PF00593 TonB dependent receptor RD03_RS09365 PF07715 TonB-dependent Receptor Plug Domain RD03_RS09380 PF00691 OmpA family RD03_RS09390 PF00330 Aconitase family (aconitate hydratase) RD03_RS09390 PF06434 Aconitate hydratase 2 N-terminus RD03_RS09390 PF11791 Aconitate B N-terminal domain RD03_RS09415 PF00892 EamA-like transporter family RD03_RS09420 PF01925 Sulfite exporter TauE/SafE RD03_RS09435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS09435 PF03466 LysR substrate binding domain RD03_RS09440 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RD03_RS09440 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RD03_RS09450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS09450 PF03466 LysR substrate binding domain RD03_RS09495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD03_RS09495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD03_RS09500 PF01425 Amidase RD03_RS09510 PF00171 Aldehyde dehydrogenase family RD03_RS09525 PF08264 Anticodon-binding domain of tRNA RD03_RS09525 PF00133 tRNA synthetases class I (I, L, M and V) RD03_RS09525 PF09334 tRNA synthetases class I (M) RD03_RS09525 PF13603 Leucyl-tRNA synthetase, Domain 2 RD03_RS09530 PF07690 Major Facilitator Superfamily RD03_RS09535 PF01047 MarR family RD03_RS09555 PF01740 STAS domain RD03_RS09555 PF00916 Sulfate permease family RD03_RS09560 PF00471 Ribosomal protein L33 RD03_RS09565 PF00830 Ribosomal L28 family RD03_RS09570 PF07690 Major Facilitator Superfamily RD03_RS09590 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS09595 PF00571 CBS domain RD03_RS09595 PF00005 ABC transporter RD03_RS09600 PF01361 Tautomerase enzyme RD03_RS09605 PF00108 Thiolase, N-terminal domain RD03_RS09605 PF02803 Thiolase, C-terminal domain RD03_RS09615 PF00392 Bacterial regulatory proteins, gntR family RD03_RS09615 PF07729 FCD domain RD03_RS09625 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS09635 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS09640 PF00080 Copper/zinc superoxide dismutase (SODC) RD03_RS09655 PF00005 ABC transporter RD03_RS09660 PF03459 TOBE domain RD03_RS09660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS09680 PF00529 HlyD membrane-fusion protein of T1SS RD03_RS09680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD03_RS09685 PF00873 AcrB/AcrD/AcrF family RD03_RS09690 PF02321 Outer membrane efflux protein RD03_RS09690 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RD03_RS09695 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RD03_RS09700 PF01648 4'-phosphopantetheinyl transferase superfamily RD03_RS09705 PF00933 Glycosyl hydrolase family 3 N terminal domain RD03_RS09710 PF08459 UvrC Helix-hairpin-helix N-terminal RD03_RS09710 PF01541 GIY-YIG catalytic domain RD03_RS09710 PF02151 UvrB/uvrC motif RD03_RS09715 PF01066 CDP-alcohol phosphatidyltransferase RD03_RS09730 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RD03_RS09730 PF14489 QueF-like protein RD03_RS09735 PF00463 Isocitrate lyase family RD03_RS09750 PF02653 Branched-chain amino acid transport system / permease component RD03_RS09750 PF11862 Domain of unknown function (DUF3382) RD03_RS09755 PF02653 Branched-chain amino acid transport system / permease component RD03_RS09760 PF13458 Periplasmic binding protein RD03_RS09765 PF00355 Rieske [2Fe-2S] domain RD03_RS09765 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD03_RS09770 PF00866 Ring hydroxylating beta subunit RD03_RS09775 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS09785 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS09790 PF02515 CoA-transferase family III RD03_RS09795 PF07859 alpha/beta hydrolase fold RD03_RS09800 PF14535 AMP-binding enzyme C-terminal domain RD03_RS09800 PF00501 AMP-binding enzyme RD03_RS09805 PF02803 Thiolase, C-terminal domain RD03_RS09805 PF00108 Thiolase, N-terminal domain RD03_RS09815 PF12228 Protein of unknown function (DUF3604) RD03_RS09820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS09820 PF03466 LysR substrate binding domain RD03_RS09825 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS09845 PF01152 Bacterial-like globin RD03_RS09880 PF01425 Amidase RD03_RS09885 PF01425 Amidase RD03_RS09895 PF01522 Polysaccharide deacetylase RD03_RS09900 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS09920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD03_RS09920 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS09945 PF03466 LysR substrate binding domain RD03_RS09945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS09955 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS09955 PF01799 [2Fe-2S] binding domain RD03_RS09960 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD03_RS09970 PF12833 Helix-turn-helix domain RD03_RS09970 PF06719 AraC-type transcriptional regulator N-terminus RD03_RS09990 PF07690 Major Facilitator Superfamily RD03_RS10005 PF00583 Acetyltransferase (GNAT) family RD03_RS10015 PF00664 ABC transporter transmembrane region RD03_RS10015 PF00005 ABC transporter RD03_RS10025 PF02535 ZIP Zinc transporter RD03_RS10040 PF00916 Sulfate permease family RD03_RS10040 PF01740 STAS domain RD03_RS10060 PF03625 Domain of unknown function DUF302 RD03_RS10060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD03_RS10070 PF02805 Metal binding domain of Ada RD03_RS10070 PF12833 Helix-turn-helix domain RD03_RS10075 PF07237 Protein of unknown function (DUF1428) RD03_RS10080 PF02567 Phenazine biosynthesis-like protein RD03_RS10085 PF03466 LysR substrate binding domain RD03_RS10085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS10090 PF04286 Protein of unknown function (DUF445) RD03_RS10105 PF00171 Aldehyde dehydrogenase family RD03_RS10110 PF00158 Sigma-54 interaction domain RD03_RS10110 PF01590 GAF domain RD03_RS10110 PF02954 Bacterial regulatory protein, Fis family RD03_RS10125 PF04172 LrgB-like family RD03_RS10130 PF03788 LrgA family RD03_RS10135 PF13649 Methyltransferase domain RD03_RS10145 PF00155 Aminotransferase class I and II RD03_RS10150 PF00202 Aminotransferase class-III RD03_RS10185 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD03_RS10185 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RD03_RS10190 PF12801 4Fe-4S binding domain RD03_RS10190 PF13746 4Fe-4S dicluster domain RD03_RS10190 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RD03_RS10215 PF00005 ABC transporter RD03_RS10220 PF01061 ABC-2 type transporter RD03_RS10225 PF01594 AI-2E family transporter RD03_RS10255 PF04539 Sigma-70 region 3 RD03_RS10255 PF04542 Sigma-70 region 2 RD03_RS10255 PF00140 Sigma-70 factor, region 1.2 RD03_RS10255 PF03979 Sigma-70 factor, region 1.1 RD03_RS10255 PF04546 Sigma-70, non-essential region RD03_RS10255 PF04545 Sigma-70, region 4 RD03_RS10260 PF10410 DnaB-helicase binding domain of primase RD03_RS10260 PF08278 DNA primase DnaG DnaB-binding RD03_RS10260 PF01807 CHC2 zinc finger RD03_RS10260 PF08275 DNA primase catalytic core, N-terminal domain RD03_RS10265 PF01165 Ribosomal protein S21 RD03_RS10270 PF00156 Phosphoribosyl transferase domain RD03_RS10275 PF00709 Adenylosuccinate synthetase RD03_RS10280 PF13393 Histidyl-tRNA synthetase RD03_RS10285 PF01145 SPFH domain / Band 7 family RD03_RS10290 PF12221 Bacterial membrane protein N terminal RD03_RS10290 PF01145 SPFH domain / Band 7 family RD03_RS10295 PF16360 GTP-binding GTPase Middle Region RD03_RS10295 PF13167 GTP-binding GTPase N-terminal RD03_RS10295 PF01926 50S ribosome-binding GTPase RD03_RS10300 PF17209 Hfq protein RD03_RS10305 PF00155 Aminotransferase class I and II RD03_RS10310 PF01926 50S ribosome-binding GTPase RD03_RS10310 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RD03_RS10315 PF13360 PQQ-like domain RD03_RS10320 PF09976 Tetratricopeptide repeat-like domain RD03_RS10325 PF13393 Histidyl-tRNA synthetase RD03_RS10325 PF03129 Anticodon binding domain RD03_RS10330 PF04551 GcpE protein RD03_RS10340 PF04055 Radical SAM superfamily RD03_RS10345 PF00334 Nucleoside diphosphate kinase RD03_RS10350 PF10458 Valyl tRNA synthetase tRNA binding arm RD03_RS10350 PF00133 tRNA synthetases class I (I, L, M and V) RD03_RS10350 PF08264 Anticodon-binding domain of tRNA RD03_RS10360 PF00072 Response regulator receiver domain RD03_RS10360 PF00486 Transcriptional regulatory protein, C terminal RD03_RS10365 PF08521 Two-component sensor kinase N-terminal RD03_RS10365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS10365 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS10385 PF00266 Aminotransferase class-V RD03_RS10390 PF01746 tRNA (Guanine-1)-methyltransferase RD03_RS10395 PF01782 RimM N-terminal domain RD03_RS10400 PF00886 Ribosomal protein S16 RD03_RS10410 PF01206 Sulfurtransferase TusA RD03_RS10415 PF02272 DHHA1 domain RD03_RS10415 PF01411 tRNA synthetases class II (A) RD03_RS10415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD03_RS10460 PF01425 Amidase RD03_RS10465 PF00005 ABC transporter RD03_RS10465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS10470 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS10475 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS10480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS10495 PF03466 LysR substrate binding domain RD03_RS10495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS10500 PF13416 Bacterial extracellular solute-binding protein RD03_RS10505 PF01266 FAD dependent oxidoreductase RD03_RS10510 PF00970 Oxidoreductase FAD-binding domain RD03_RS10510 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS10510 PF00175 Oxidoreductase NAD-binding domain RD03_RS10515 PF02261 Aspartate decarboxylase RD03_RS10530 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD03_RS10535 PF17042 Nucleotide-binding C-terminal domain RD03_RS10535 PF07005 Sugar-binding N-terminal domain RD03_RS10540 PF03812 2-keto-3-deoxygluconate permease RD03_RS10550 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS10560 PF02142 MGS-like domain RD03_RS10565 PF04384 Iron-sulphur cluster assembly RD03_RS10570 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS10575 PF00012 Hsp70 protein RD03_RS10580 PF07743 HSCB C-terminal oligomerisation domain RD03_RS10585 PF01521 Iron-sulphur cluster biosynthesis RD03_RS10590 PF01592 NifU-like N terminal domain RD03_RS10595 PF00266 Aminotransferase class-V RD03_RS10600 PF02082 Transcriptional regulator RD03_RS10605 PF01451 Low molecular weight phosphotyrosine protein phosphatase RD03_RS10610 PF17757 UvrB interaction domain RD03_RS10610 PF12344 Ultra-violet resistance protein B RD03_RS10610 PF02151 UvrB/uvrC motif RD03_RS10610 PF04851 Type III restriction enzyme, res subunit RD03_RS10610 PF00271 Helicase conserved C-terminal domain RD03_RS10615 PF00155 Aminotransferase class I and II RD03_RS10620 PF01726 LexA DNA binding domain RD03_RS10620 PF00717 Peptidase S24-like RD03_RS10625 PF03797 Autotransporter beta-domain RD03_RS10625 PF03212 Pertactin RD03_RS10645 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS10650 PF01144 Coenzyme A transferase RD03_RS10655 PF01144 Coenzyme A transferase RD03_RS10665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS10665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS10665 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS10675 PF02803 Thiolase, C-terminal domain RD03_RS10675 PF00108 Thiolase, N-terminal domain RD03_RS10685 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS10690 PF01575 MaoC like domain RD03_RS10695 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS10700 PF02515 CoA-transferase family III RD03_RS10705 PF03466 LysR substrate binding domain RD03_RS10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS10710 PF00004 ATPase family associated with various cellular activities (AAA) RD03_RS10710 PF05362 Lon protease (S16) C-terminal proteolytic domain RD03_RS10710 PF02190 ATP-dependent protease La (LON) substrate-binding domain RD03_RS10715 PF07724 AAA domain (Cdc48 subfamily) RD03_RS10715 PF06689 ClpX C4-type zinc finger RD03_RS10715 PF10431 C-terminal, D2-small domain, of ClpB protein RD03_RS10720 PF00574 Clp protease RD03_RS10725 PF05698 Bacterial trigger factor protein (TF) C-terminus RD03_RS10725 PF05697 Bacterial trigger factor protein (TF) RD03_RS10725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD03_RS10730 PF03350 Uncharacterized protein family, UPF0114 RD03_RS10735 PF00313 'Cold-shock' DNA-binding domain RD03_RS10745 PF00313 'Cold-shock' DNA-binding domain RD03_RS10780 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RD03_RS10780 PF14602 Hexapeptide repeat of succinyl-transferase RD03_RS10780 PF00132 Bacterial transferase hexapeptide (six repeats) RD03_RS10785 PF07687 Peptidase dimerisation domain RD03_RS10785 PF01546 Peptidase family M20/M25/M40 RD03_RS10790 PF05175 Methyltransferase small domain RD03_RS10795 PF12848 ABC transporter RD03_RS10795 PF00005 ABC transporter RD03_RS10800 PF07715 TonB-dependent Receptor Plug Domain RD03_RS10805 PF13361 UvrD-like helicase C-terminal domain RD03_RS10805 PF00580 UvrD/REP helicase N-terminal domain RD03_RS10825 PF01029 NusB family RD03_RS10825 PF01189 16S rRNA methyltransferase RsmB/F RD03_RS10830 PF01687 Riboflavin kinase RD03_RS10830 PF06574 FAD synthetase RD03_RS10835 PF06827 Zinc finger found in FPG and IleRS RD03_RS10835 PF00133 tRNA synthetases class I (I, L, M and V) RD03_RS10835 PF08264 Anticodon-binding domain of tRNA RD03_RS10840 PF01252 Signal peptidase (SPase) II RD03_RS10845 PF02441 Flavoprotein RD03_RS10845 PF04127 DNA / pantothenate metabolism flavoprotein RD03_RS10855 PF01037 Lrp/AsnC ligand binding domain RD03_RS10870 PF13406 Transglycosylase SLT domain RD03_RS10875 PF04305 Protein of unknown function (DUF455) RD03_RS10895 PF02875 Mur ligase family, glutamate ligase domain RD03_RS10895 PF08245 Mur ligase middle domain RD03_RS10895 PF08443 RimK-like ATP-grasp domain RD03_RS10900 PF02875 Mur ligase family, glutamate ligase domain RD03_RS10900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD03_RS10900 PF08245 Mur ligase middle domain RD03_RS10905 PF05532 CsbD-like RD03_RS10915 PF04972 BON domain RD03_RS10925 PF00005 ABC transporter RD03_RS10930 PF13472 GDSL-like Lipase/Acylhydrolase family RD03_RS10935 PF13145 PPIC-type PPIASE domain RD03_RS10940 PF03009 Glycerophosphoryl diester phosphodiesterase family RD03_RS10945 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RD03_RS10950 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS10950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD03_RS10955 PF00462 Glutaredoxin RD03_RS10955 PF08534 Redoxin RD03_RS10965 PF00376 MerR family regulatory protein RD03_RS10965 PF09278 MerR, DNA binding RD03_RS10970 PF05958 tRNA (Uracil-5-)-methyltransferase RD03_RS10990 PF01551 Peptidase family M23 RD03_RS10990 PF01476 LysM domain RD03_RS11000 PF01975 Survival protein SurE RD03_RS11005 PF02660 Glycerol-3-phosphate acyltransferase RD03_RS11015 PF00814 Glycoprotease family RD03_RS11020 PF00860 Permease family RD03_RS11030 PF00085 Thioredoxin RD03_RS11035 PF01205 Uncharacterized protein family UPF0029 RD03_RS11045 PF00583 Acetyltransferase (GNAT) family RD03_RS11050 PF12802 MarR family RD03_RS11060 PF00202 Aminotransferase class-III RD03_RS11065 PF16868 NMT1-like family RD03_RS11085 PF03797 Autotransporter beta-domain RD03_RS11095 PF13396 Phospholipase_D-nuclease N-terminal RD03_RS11095 PF13091 PLD-like domain RD03_RS11100 PF01740 STAS domain RD03_RS11105 PF13581 Histidine kinase-like ATPase domain RD03_RS11110 PF01168 Alanine racemase, N-terminal domain RD03_RS11110 PF00842 Alanine racemase, C-terminal domain RD03_RS11120 PF07228 Stage II sporulation protein E (SpoIIE) RD03_RS11120 PF00672 HAMP domain RD03_RS11145 PF08281 Sigma-70, region 4 RD03_RS11145 PF04542 Sigma-70 region 2 RD03_RS11150 PF03958 Bacterial type II/III secretion system short domain RD03_RS11150 PF00263 Bacterial type II and III secretion system protein RD03_RS11160 PF01312 FlhB HrpN YscU SpaS Family RD03_RS11165 PF01311 Bacterial export proteins, family 1 RD03_RS11170 PF01313 Bacterial export proteins, family 3 RD03_RS11175 PF00813 FliP family RD03_RS11180 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD03_RS11195 PF18269 T3SS EscN ATPase C-terminal domain RD03_RS11195 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD03_RS11195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD03_RS11200 PF02108 Flagellar assembly protein FliH RD03_RS11210 PF01514 Secretory protein of YscJ/FliF family RD03_RS11275 PF00771 FHIPEP family RD03_RS11305 PF03449 Transcription elongation factor, N-terminal RD03_RS11305 PF01272 Transcription elongation factor, GreA/GreB, C-term RD03_RS11310 PF00672 HAMP domain RD03_RS11310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD03_RS11310 PF02203 Tar ligand binding domain homologue RD03_RS11315 PF00860 Permease family RD03_RS11335 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS11345 PF13419 Haloacid dehalogenase-like hydrolase RD03_RS11350 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS11355 PF00005 ABC transporter RD03_RS11355 PF08402 TOBE domain RD03_RS11360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS11360 PF03466 LysR substrate binding domain RD03_RS11370 PF00581 Rhodanese-like domain RD03_RS11380 PF01435 Peptidase family M48 RD03_RS11385 PF00107 Zinc-binding dehydrogenase RD03_RS11385 PF08240 Alcohol dehydrogenase GroES-like domain RD03_RS11390 PF00892 EamA-like transporter family RD03_RS11400 PF01047 MarR family RD03_RS11410 PF00529 HlyD membrane-fusion protein of T1SS RD03_RS11410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD03_RS11415 PF07690 Major Facilitator Superfamily RD03_RS11420 PF00180 Isocitrate/isopropylmalate dehydrogenase RD03_RS11425 PF00155 Aminotransferase class I and II RD03_RS11425 PF00392 Bacterial regulatory proteins, gntR family RD03_RS11430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS11435 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS11440 PF12911 N-terminal TM domain of oligopeptide transport permease C RD03_RS11440 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS11445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS11445 PF00005 ABC transporter RD03_RS11455 PF00202 Aminotransferase class-III RD03_RS11460 PF07883 Cupin domain RD03_RS11465 PF00850 Histone deacetylase domain RD03_RS11470 PF01546 Peptidase family M20/M25/M40 RD03_RS11470 PF07687 Peptidase dimerisation domain RD03_RS11480 PF00171 Aldehyde dehydrogenase family RD03_RS11485 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD03_RS11490 PF00202 Aminotransferase class-III RD03_RS11495 PF01235 Sodium:alanine symporter family RD03_RS11500 PF05872 Bacterial protein of unknown function (DUF853) RD03_RS11505 PF01709 Transcriptional regulator RD03_RS11510 PF02843 Phosphoribosylglycinamide synthetase, C domain RD03_RS11510 PF02844 Phosphoribosylglycinamide synthetase, N domain RD03_RS11510 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RD03_RS11515 PF01218 Coproporphyrinogen III oxidase RD03_RS11520 PF01467 Cytidylyltransferase-like RD03_RS11530 PF02590 Predicted SPOUT methyltransferase RD03_RS11535 PF02545 Maf-like protein RD03_RS11540 PF03212 Pertactin RD03_RS11540 PF03797 Autotransporter beta-domain RD03_RS11580 PF10150 Ribonuclease E/G family RD03_RS11580 PF00575 S1 RNA binding domain RD03_RS11585 PF00800 Prephenate dehydratase RD03_RS11585 PF01842 ACT domain RD03_RS11595 PF07690 Major Facilitator Superfamily RD03_RS11600 PF00005 ABC transporter RD03_RS11600 PF00664 ABC transporter transmembrane region RD03_RS11605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD03_RS11615 PF03692 Putative zinc- or iron-chelating domain RD03_RS11630 PF00884 Sulfatase RD03_RS11635 PF00534 Glycosyl transferases group 1 RD03_RS11635 PF13439 Glycosyltransferase Family 4 RD03_RS11640 PF00535 Glycosyl transferase family 2 RD03_RS11645 PF01522 Polysaccharide deacetylase RD03_RS11650 PF00534 Glycosyl transferases group 1 RD03_RS11650 PF13439 Glycosyltransferase Family 4 RD03_RS11655 PF07733 Bacterial DNA polymerase III alpha NTPase domain RD03_RS11655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RD03_RS11655 PF14579 Helix-hairpin-helix motif RD03_RS11655 PF02811 PHP domain RD03_RS11655 PF01336 OB-fold nucleic acid binding domain RD03_RS11665 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RD03_RS11665 PF00271 Helicase conserved C-terminal domain RD03_RS11665 PF04408 Helicase associated domain (HA2) RD03_RS11665 PF11898 Domain of unknown function (DUF3418) RD03_RS11665 PF00270 DEAD/DEAH box helicase RD03_RS11670 PF00696 Amino acid kinase family RD03_RS11670 PF00583 Acetyltransferase (GNAT) family RD03_RS11675 PF04362 Bacterial Fe(2+) trafficking RD03_RS11680 PF05506 Domain of unknown function (DUF756) RD03_RS11680 PF04185 Phosphoesterase family RD03_RS11685 PF01895 PhoU domain RD03_RS11690 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RD03_RS11695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS11695 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS11695 PF18158 Adaptive response protein AidB N-terminal domain RD03_RS11700 PF02646 RmuC family RD03_RS11710 PF02245 Methylpurine-DNA glycosylase (MPG) RD03_RS11720 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS11725 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS11730 PF08402 TOBE domain RD03_RS11730 PF00005 ABC transporter RD03_RS11735 PF13416 Bacterial extracellular solute-binding protein RD03_RS11755 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS11765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD03_RS11765 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD03_RS11785 PF00285 Citrate synthase, C-terminal domain RD03_RS11790 PF03937 Flavinator of succinate dehydrogenase RD03_RS11795 PF13085 2Fe-2S iron-sulfur cluster binding domain RD03_RS11800 PF02910 Fumarate reductase flavoprotein C-term RD03_RS11800 PF00890 FAD binding domain RD03_RS11805 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD03_RS11810 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD03_RS11815 PF07702 UTRA domain RD03_RS11815 PF00392 Bacterial regulatory proteins, gntR family RD03_RS11820 PF00056 lactate/malate dehydrogenase, NAD binding domain RD03_RS11820 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RD03_RS11830 PF00285 Citrate synthase, C-terminal domain RD03_RS11835 PF00330 Aconitase family (aconitate hydratase) RD03_RS11835 PF00694 Aconitase C-terminal domain RD03_RS11840 PF04303 PrpF protein RD03_RS11845 PF03972 MmgE/PrpD family RD03_RS11850 PF03653 Uncharacterised protein family (UPF0093) RD03_RS11855 PF02926 THUMP domain RD03_RS11855 PF01170 Putative RNA methylase family UPF0020 RD03_RS11875 PF16177 Acetyl-coenzyme A synthetase N-terminus RD03_RS11875 PF00501 AMP-binding enzyme RD03_RS11875 PF13193 AMP-binding enzyme C-terminal domain RD03_RS11885 PF01430 Hsp33 protein RD03_RS11910 PF00211 Adenylate and Guanylate cyclase catalytic domain RD03_RS11915 PF04977 Septum formation initiator RD03_RS11920 PF03952 Enolase, N-terminal domain RD03_RS11920 PF00113 Enolase, C-terminal TIM barrel domain RD03_RS11930 PF00793 DAHP synthetase I family RD03_RS11935 PF00117 Glutamine amidotransferase class-I RD03_RS11935 PF06418 CTP synthase N-terminus RD03_RS11945 PF01321 Creatinase/Prolidase N-terminal domain RD03_RS11945 PF00557 Metallopeptidase family M24 RD03_RS11955 PF03576 Peptidase family S58 RD03_RS11960 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS11960 PF12911 N-terminal TM domain of oligopeptide transport permease C RD03_RS11965 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS11970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS11975 PF00005 ABC transporter RD03_RS11975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS11980 PF01112 Asparaginase RD03_RS11990 PF01144 Coenzyme A transferase RD03_RS12010 PF16363 GDP-mannose 4,6 dehydratase RD03_RS12025 PF01212 Beta-eliminating lyase RD03_RS12030 PF00892 EamA-like transporter family RD03_RS12035 PF13193 AMP-binding enzyme C-terminal domain RD03_RS12035 PF16177 Acetyl-coenzyme A synthetase N-terminus RD03_RS12035 PF00501 AMP-binding enzyme RD03_RS12045 PF03928 Haem-degrading RD03_RS12050 PF16177 Acetyl-coenzyme A synthetase N-terminus RD03_RS12050 PF00501 AMP-binding enzyme RD03_RS12050 PF13193 AMP-binding enzyme C-terminal domain RD03_RS12055 PF00877 NlpC/P60 family RD03_RS12070 PF03466 LysR substrate binding domain RD03_RS12070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS12075 PF00171 Aldehyde dehydrogenase family RD03_RS12085 PF03466 LysR substrate binding domain RD03_RS12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS12095 PF02789 Cytosol aminopeptidase family, N-terminal domain RD03_RS12095 PF00883 Cytosol aminopeptidase family, catalytic domain RD03_RS12100 PF04364 DNA polymerase III chi subunit, HolC RD03_RS12110 PF01027 Inhibitor of apoptosis-promoting Bax1 RD03_RS12115 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS12130 PF00291 Pyridoxal-phosphate dependent enzyme RD03_RS12140 PF11967 Recombination protein O N terminal RD03_RS12140 PF02565 Recombination protein O C terminal RD03_RS12145 PF07650 KH domain RD03_RS12145 PF01926 50S ribosome-binding GTPase RD03_RS12150 PF00035 Double-stranded RNA binding motif RD03_RS12150 PF14622 Ribonuclease-III-like RD03_RS12155 PF10502 Signal peptidase, peptidase S26 RD03_RS12160 PF00679 Elongation factor G C-terminus RD03_RS12160 PF00009 Elongation factor Tu GTP binding domain RD03_RS12160 PF03144 Elongation factor Tu domain 2 RD03_RS12160 PF06421 GTP-binding protein LepA C-terminus RD03_RS12165 PF13180 PDZ domain RD03_RS12180 PF04542 Sigma-70 region 2 RD03_RS12180 PF08281 Sigma-70, region 4 RD03_RS12190 PF02801 Beta-ketoacyl synthase, C-terminal domain RD03_RS12190 PF00109 Beta-ketoacyl synthase, N-terminal domain RD03_RS12195 PF00550 Phosphopantetheine attachment site RD03_RS12205 PF00698 Acyl transferase domain RD03_RS12210 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD03_RS12210 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD03_RS12215 PF02504 Fatty acid synthesis protein RD03_RS12220 PF01783 Ribosomal L32p protein family RD03_RS12225 PF02620 Large ribosomal RNA subunit accumulation protein YceD RD03_RS12230 PF02545 Maf-like protein RD03_RS12240 PF01510 N-acetylmuramoyl-L-alanine amidase RD03_RS12255 PF03883 Peroxide stress protein YaaA RD03_RS12265 PF00106 short chain dehydrogenase RD03_RS12270 PF00999 Sodium/hydrogen exchanger family RD03_RS12270 PF02254 TrkA-N domain RD03_RS12280 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RD03_RS12290 PF06276 Ferric iron reductase FhuF-like transporter RD03_RS12290 PF04183 IucA / IucC family RD03_RS12310 PF07690 Major Facilitator Superfamily RD03_RS12315 PF00593 TonB dependent receptor RD03_RS12315 PF07660 Secretin and TonB N terminus short domain RD03_RS12315 PF07715 TonB-dependent Receptor Plug Domain RD03_RS12330 PF00990 Diguanylate cyclase, GGDEF domain RD03_RS12330 PF17151 Periplasmic sensor domain RD03_RS12355 PF02403 Seryl-tRNA synthetase N-terminal domain RD03_RS12355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD03_RS12360 PF16193 AAA C-terminal domain RD03_RS12360 PF12002 MgsA AAA+ ATPase C terminal RD03_RS12360 PF00004 ATPase family associated with various cellular activities (AAA) RD03_RS12365 PF03548 Outer membrane lipoprotein carrier protein LolA RD03_RS12370 PF17854 FtsK alpha domain RD03_RS12370 PF01580 FtsK/SpoIIIE family RD03_RS12370 PF09397 Ftsk gamma domain RD03_RS12370 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RD03_RS12375 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS12380 PF00488 MutS domain V RD03_RS12380 PF01713 Smr domain RD03_RS12385 PF00893 Small Multidrug Resistance protein RD03_RS12400 PF00474 Sodium:solute symporter family RD03_RS12410 PF03814 Potassium-transporting ATPase A subunit RD03_RS12420 PF02669 K+-transporting ATPase, c chain RD03_RS12425 PF13492 GAF domain RD03_RS12425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS12425 PF02702 Osmosensitive K+ channel His kinase sensor domain RD03_RS12425 PF13493 Domain of unknown function (DUF4118) RD03_RS12425 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS12430 PF00072 Response regulator receiver domain RD03_RS12430 PF00486 Transcriptional regulatory protein, C terminal RD03_RS12450 PF00180 Isocitrate/isopropylmalate dehydrogenase RD03_RS12465 PF00034 Cytochrome c RD03_RS12475 PF00004 ATPase family associated with various cellular activities (AAA) RD03_RS12475 PF01434 Peptidase family M41 RD03_RS12475 PF17862 AAA+ lid domain RD03_RS12495 PF05193 Peptidase M16 inactive domain RD03_RS12495 PF00675 Insulinase (Peptidase family M16) RD03_RS12500 PF01556 DnaJ C terminal domain RD03_RS12500 PF00684 DnaJ central domain RD03_RS12500 PF00226 DnaJ domain RD03_RS12505 PF00012 Hsp70 protein RD03_RS12515 PF01025 GrpE RD03_RS12525 PF00762 Ferrochelatase RD03_RS12530 PF01628 HrcA protein C terminal domain RD03_RS12530 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RD03_RS12535 PF01513 ATP-NAD kinase RD03_RS12540 PF02463 RecF/RecN/SMC N terminal domain RD03_RS12545 PF01475 Ferric uptake regulator family RD03_RS12550 PF04355 SmpA / OmlA family RD03_RS12555 PF05173 Dihydrodipicolinate reductase, C-terminus RD03_RS12555 PF01113 Dihydrodipicolinate reductase, N-terminus RD03_RS12560 PF01565 FAD binding domain RD03_RS12560 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RD03_RS12570 PF00561 alpha/beta hydrolase fold RD03_RS12580 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS12585 PF00551 Formyl transferase RD03_RS12595 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS12595 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD03_RS12595 PF01571 Aminomethyltransferase folate-binding domain RD03_RS12595 PF17806 Sarcosine oxidase A3 domain RD03_RS12600 PF04267 Sarcosine oxidase, delta subunit family RD03_RS12605 PF01266 FAD dependent oxidoreductase RD03_RS12615 PF03466 LysR substrate binding domain RD03_RS12615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS12620 PF02615 Malate/L-lactate dehydrogenase RD03_RS12625 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD03_RS12625 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD03_RS12630 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS12650 PF00437 Type II/IV secretion system protein RD03_RS12655 PF13629 Pilus formation protein N terminal region RD03_RS12655 PF04972 BON domain RD03_RS12655 PF00263 Bacterial type II and III secretion system protein RD03_RS12690 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD03_RS12695 PF00719 Inorganic pyrophosphatase RD03_RS12715 PF03900 Porphobilinogen deaminase, C-terminal domain RD03_RS12715 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RD03_RS12720 PF03741 Integral membrane protein TerC family RD03_RS12725 PF03741 Integral membrane protein TerC family RD03_RS12730 PF02629 CoA binding domain RD03_RS12730 PF00549 CoA-ligase RD03_RS12735 PF00549 CoA-ligase RD03_RS12735 PF08442 ATP-grasp domain RD03_RS12745 PF08267 Cobalamin-independent synthase, N-terminal domain RD03_RS12745 PF01717 Cobalamin-independent synthase, Catalytic domain RD03_RS12750 PF03466 LysR substrate binding domain RD03_RS12750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS12755 PF02631 RecX family RD03_RS12760 PF00154 recA bacterial DNA recombination protein RD03_RS12765 PF00072 Response regulator receiver domain RD03_RS12765 PF00486 Transcriptional regulatory protein, C terminal RD03_RS12770 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS12770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS12775 PF00083 Sugar (and other) transporter RD03_RS12775 PF08946 Osmosensory transporter coiled coil RD03_RS12780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD03_RS12780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD03_RS12780 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS12785 PF08402 TOBE domain RD03_RS12785 PF00005 ABC transporter RD03_RS12790 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS12800 PF00106 short chain dehydrogenase RD03_RS12820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS12820 PF03466 LysR substrate binding domain RD03_RS12825 PF02515 CoA-transferase family III RD03_RS12835 PF04381 Putative exonuclease, RdgC RD03_RS12840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD03_RS12840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD03_RS12860 PF04231 Endonuclease I RD03_RS12910 PF00216 Bacterial DNA-binding protein RD03_RS12915 PF03484 tRNA synthetase B5 domain RD03_RS12915 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RD03_RS12915 PF01588 Putative tRNA binding domain RD03_RS12915 PF03147 Ferredoxin-fold anticodon binding domain RD03_RS12915 PF03483 B3/4 domain RD03_RS12920 PF01409 tRNA synthetases class II core domain (F) RD03_RS12920 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RD03_RS12925 PF00453 Ribosomal protein L20 RD03_RS12930 PF01632 Ribosomal protein L35 RD03_RS12940 PF00692 dUTPase RD03_RS12950 PF00155 Aminotransferase class I and II RD03_RS12950 PF00392 Bacterial regulatory proteins, gntR family RD03_RS12965 PF13847 Methyltransferase domain RD03_RS12975 PF09335 SNARE associated Golgi protein RD03_RS13000 PF00356 Bacterial regulatory proteins, lacI family RD03_RS13005 PF00005 ABC transporter RD03_RS13005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS13010 PF12911 N-terminal TM domain of oligopeptide transport permease C RD03_RS13010 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS13015 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS13020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS13025 PF07687 Peptidase dimerisation domain RD03_RS13025 PF01546 Peptidase family M20/M25/M40 RD03_RS13035 PF01810 LysE type translocator RD03_RS13045 PF00392 Bacterial regulatory proteins, gntR family RD03_RS13045 PF00155 Aminotransferase class I and II RD03_RS13050 PF07690 Major Facilitator Superfamily RD03_RS13055 PF08240 Alcohol dehydrogenase GroES-like domain RD03_RS13055 PF00107 Zinc-binding dehydrogenase RD03_RS13070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS13070 PF03466 LysR substrate binding domain RD03_RS13075 PF01965 DJ-1/PfpI family RD03_RS13075 PF12833 Helix-turn-helix domain RD03_RS13080 PF12706 Beta-lactamase superfamily domain RD03_RS13095 PF10996 Beta-Casp domain RD03_RS13095 PF00753 Metallo-beta-lactamase superfamily RD03_RS13095 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RD03_RS13100 PF01740 STAS domain RD03_RS13100 PF00916 Sulfate permease family RD03_RS13130 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS13135 PF00005 ABC transporter RD03_RS13145 PF01979 Amidohydrolase family RD03_RS13160 PF07690 Major Facilitator Superfamily RD03_RS13170 PF07804 HipA-like C-terminal domain RD03_RS13170 PF13657 HipA N-terminal domain RD03_RS13180 PF00117 Glutamine amidotransferase class-I RD03_RS13180 PF02540 NAD synthase RD03_RS13180 PF00958 GMP synthase C terminal domain RD03_RS13185 PF00571 CBS domain RD03_RS13185 PF00478 IMP dehydrogenase / GMP reductase domain RD03_RS13205 PF00196 Bacterial regulatory proteins, luxR family RD03_RS13205 PF00072 Response regulator receiver domain RD03_RS13230 PF00149 Calcineurin-like phosphoesterase RD03_RS13230 PF12320 Type 5 capsule protein repressor C-terminal domain RD03_RS13235 PF01266 FAD dependent oxidoreductase RD03_RS13240 PF01037 Lrp/AsnC ligand binding domain RD03_RS13265 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS13275 PF00005 ABC transporter RD03_RS13275 PF17912 MalK OB fold domain RD03_RS13280 PF00005 ABC transporter RD03_RS13280 PF17912 MalK OB fold domain RD03_RS13285 PF00455 DeoR C terminal sensor domain RD03_RS13285 PF08220 DeoR-like helix-turn-helix domain RD03_RS13290 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RD03_RS13290 PF01266 FAD dependent oxidoreductase RD03_RS13305 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS13310 PF00890 FAD binding domain RD03_RS13310 PF14537 Cytochrome c3 RD03_RS13335 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS13340 PF00701 Dihydrodipicolinate synthetase family RD03_RS13360 PF00472 RF-1 domain RD03_RS13370 PF01242 6-pyruvoyl tetrahydropterin synthase RD03_RS13375 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS13380 PF00596 Class II Aldolase and Adducin N-terminal domain RD03_RS13405 PF05594 Haemagluttinin repeat RD03_RS13405 PF05860 haemagglutination activity domain RD03_RS13405 PF13332 Hemagglutinin repeat RD03_RS13405 PF13018 Extended Signal Peptide of Type V secretion system RD03_RS13410 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RD03_RS13410 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RD03_RS13410 PF02769 AIR synthase related protein, C-terminal domain RD03_RS13415 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD03_RS13420 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD03_RS13420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD03_RS13425 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS13440 PF16970 Type-1 fimbrial protein, A RD03_RS13445 PF00501 AMP-binding enzyme RD03_RS13445 PF14535 AMP-binding enzyme C-terminal domain RD03_RS13450 PF03061 Thioesterase superfamily RD03_RS13455 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS13460 PF00171 Aldehyde dehydrogenase family RD03_RS13470 PF00175 Oxidoreductase NAD-binding domain RD03_RS13470 PF00970 Oxidoreductase FAD-binding domain RD03_RS13470 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS13475 PF01883 Iron-sulfur cluster assembly protein RD03_RS13480 PF05138 Phenylacetic acid catabolic protein RD03_RS13485 PF06243 Phenylacetic acid degradation B RD03_RS13490 PF05138 Phenylacetic acid catabolic protein RD03_RS13495 PF07848 PaaX-like protein RD03_RS13495 PF08223 PaaX-like protein C-terminal domain RD03_RS13500 PF03853 YjeF-related protein N-terminus RD03_RS13505 PF00929 Exonuclease RD03_RS13510 PF01435 Peptidase family M48 RD03_RS13515 PF03193 RsgA GTPase RD03_RS13520 PF12911 N-terminal TM domain of oligopeptide transport permease C RD03_RS13520 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS13525 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS13530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS13540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS13540 PF03466 LysR substrate binding domain RD03_RS13565 PF00543 Nitrogen regulatory protein P-II RD03_RS13570 PF02540 NAD synthase RD03_RS13570 PF00795 Carbon-nitrogen hydrolase RD03_RS13575 PF00924 Mechanosensitive ion channel RD03_RS13580 PF00206 Lyase RD03_RS13580 PF14698 Argininosuccinate lyase C-terminal RD03_RS13600 PF04055 Radical SAM superfamily RD03_RS13600 PF06463 Molybdenum Cofactor Synthesis C RD03_RS13605 PF03453 MoeA N-terminal region (domain I and II) RD03_RS13605 PF00994 Probable molybdopterin binding domain RD03_RS13605 PF03454 MoeA C-terminal region (domain IV) RD03_RS13610 PF00994 Probable molybdopterin binding domain RD03_RS13615 PF02391 MoaE protein RD03_RS13625 PF01967 MoaC family RD03_RS13635 PF01738 Dienelactone hydrolase family RD03_RS13645 PF08534 Redoxin RD03_RS13660 PF04055 Radical SAM superfamily RD03_RS13660 PF06968 Biotin and Thiamin Synthesis associated domain RD03_RS13680 PF00403 Heavy-metal-associated domain RD03_RS13685 PF13411 MerR HTH family regulatory protein RD03_RS13710 PF02104 SURF1 family RD03_RS13715 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD03_RS13720 PF00510 Cytochrome c oxidase subunit III RD03_RS13725 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD03_RS13735 PF00083 Sugar (and other) transporter RD03_RS13735 PF07690 Major Facilitator Superfamily RD03_RS13750 PF04380 Membrane fusogenic activity RD03_RS13755 PF00543 Nitrogen regulatory protein P-II RD03_RS13765 PF03212 Pertactin RD03_RS13765 PF03797 Autotransporter beta-domain RD03_RS13775 PF00440 Bacterial regulatory proteins, tetR family RD03_RS13780 PF07690 Major Facilitator Superfamily RD03_RS13785 PF00005 ABC transporter RD03_RS13790 PF00005 ABC transporter RD03_RS13790 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD03_RS13795 PF11862 Domain of unknown function (DUF3382) RD03_RS13795 PF02653 Branched-chain amino acid transport system / permease component RD03_RS13800 PF02653 Branched-chain amino acid transport system / permease component RD03_RS13805 PF13458 Periplasmic binding protein RD03_RS13815 PF00171 Aldehyde dehydrogenase family RD03_RS13815 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RD03_RS13815 PF14850 DNA-binding domain of Proline dehydrogenase RD03_RS13815 PF01619 Proline dehydrogenase RD03_RS13825 PF02470 MlaD protein RD03_RS13830 PF04403 Paraquat-inducible protein A RD03_RS13835 PF00004 ATPase family associated with various cellular activities (AAA) RD03_RS13835 PF17871 AAA lid domain RD03_RS13835 PF02861 Clp amino terminal domain, pathogenicity island component RD03_RS13835 PF10431 C-terminal, D2-small domain, of ClpB protein RD03_RS13835 PF07724 AAA domain (Cdc48 subfamily) RD03_RS13840 PF06832 Penicillin-Binding Protein C-terminus Family RD03_RS13840 PF00905 Penicillin binding protein transpeptidase domain RD03_RS13840 PF00912 Transglycosylase RD03_RS13845 PF01835 MG2 domain RD03_RS13845 PF17962 Bacterial macroglobulin domain 6 RD03_RS13845 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RD03_RS13845 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RD03_RS13845 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RD03_RS13845 PF00207 Alpha-2-macroglobulin family RD03_RS13845 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RD03_RS13845 PF07703 Alpha-2-macroglobulin bait region domain RD03_RS13850 PF02617 ATP-dependent Clp protease adaptor protein ClpS RD03_RS13855 PF00313 'Cold-shock' DNA-binding domain RD03_RS13865 PF02803 Thiolase, C-terminal domain RD03_RS13865 PF00108 Thiolase, N-terminal domain RD03_RS13870 PF00654 Voltage gated chloride channel RD03_RS13875 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD03_RS13875 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD03_RS13880 PF13742 OB-fold nucleic acid binding domain RD03_RS13880 PF02601 Exonuclease VII, large subunit RD03_RS13890 PF01618 MotA/TolQ/ExbB proton channel family RD03_RS13895 PF02472 Biopolymer transport protein ExbD/TolR RD03_RS13900 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RD03_RS13905 PF03966 Trm112p-like protein RD03_RS13910 PF02348 Cytidylyltransferase RD03_RS13915 PF05191 Adenylate kinase, active site lid RD03_RS13920 PF00106 short chain dehydrogenase RD03_RS13925 PF03023 Lipid II flippase MurJ RD03_RS13935 PF01649 Ribosomal protein S20 RD03_RS13940 PF03328 HpcH/HpaI aldolase/citrate lyase family RD03_RS13955 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS13965 PF02615 Malate/L-lactate dehydrogenase RD03_RS13980 PF00291 Pyridoxal-phosphate dependent enzyme RD03_RS13980 PF14821 Threonine synthase N terminus RD03_RS13985 PF03447 Homoserine dehydrogenase, NAD binding domain RD03_RS13985 PF01842 ACT domain RD03_RS13985 PF00742 Homoserine dehydrogenase RD03_RS13990 PF00155 Aminotransferase class I and II RD03_RS13995 PF04430 Protein of unknown function (DUF498/DUF598) RD03_RS14000 PF00578 AhpC/TSA family RD03_RS14005 PF02562 PhoH-like protein RD03_RS14005 PF13638 PIN domain RD03_RS14010 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD03_RS14015 PF13593 SBF-like CPA transporter family (DUF4137) RD03_RS14020 PF00772 DnaB-like helicase N terminal domain RD03_RS14020 PF03796 DnaB-like helicase C terminal domain RD03_RS14030 PF01281 Ribosomal protein L9, N-terminal domain RD03_RS14030 PF03948 Ribosomal protein L9, C-terminal domain RD03_RS14035 PF01084 Ribosomal protein S18 RD03_RS14045 PF01250 Ribosomal protein S6 RD03_RS14050 PF02649 Type I GTP cyclohydrolase folE2 RD03_RS14055 PF02780 Transketolase, C-terminal domain RD03_RS14055 PF02779 Transketolase, pyrimidine binding domain RD03_RS14055 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RD03_RS14060 PF00348 Polyprenyl synthetase RD03_RS14065 PF02609 Exonuclease VII small subunit RD03_RS14075 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS14095 PF00571 CBS domain RD03_RS14095 PF01769 Divalent cation transporter RD03_RS14095 PF03448 MgtE intracellular N domain RD03_RS14100 PF03061 Thioesterase superfamily RD03_RS14105 PF03601 Conserved hypothetical protein 698 RD03_RS14110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS14110 PF03466 LysR substrate binding domain RD03_RS14115 PF07687 Peptidase dimerisation domain RD03_RS14115 PF01546 Peptidase family M20/M25/M40 RD03_RS14120 PF13193 AMP-binding enzyme C-terminal domain RD03_RS14120 PF00501 AMP-binding enzyme RD03_RS14130 PF00459 Inositol monophosphatase family RD03_RS14140 PF13802 Galactose mutarotase-like RD03_RS14140 PF01055 Glycosyl hydrolases family 31 RD03_RS14145 PF00005 ABC transporter RD03_RS14145 PF09383 NIL domain RD03_RS14150 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS14155 PF03180 NLPA lipoprotein RD03_RS14170 PF00465 Iron-containing alcohol dehydrogenase RD03_RS14195 PF07729 FCD domain RD03_RS14195 PF00392 Bacterial regulatory proteins, gntR family RD03_RS14200 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS14220 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS14220 PF14785 Maltose transport system permease protein MalF P2 domain RD03_RS14225 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS14230 PF08402 TOBE domain RD03_RS14230 PF00005 ABC transporter RD03_RS14235 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS14235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD03_RS14245 PF01547 Bacterial extracellular solute-binding protein RD03_RS14260 PF09278 MerR, DNA binding RD03_RS14260 PF00376 MerR family regulatory protein RD03_RS14265 PF03352 Methyladenine glycosylase RD03_RS14270 PF05170 AsmA family RD03_RS14280 PF00440 Bacterial regulatory proteins, tetR family RD03_RS14325 PF03466 LysR substrate binding domain RD03_RS14325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS14330 PF02548 Ketopantoate hydroxymethyltransferase RD03_RS14335 PF13609 Gram-negative porin RD03_RS14355 PF00083 Sugar (and other) transporter RD03_RS14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS14365 PF03466 LysR substrate binding domain RD03_RS14370 PF00155 Aminotransferase class I and II RD03_RS14375 PF01966 HD domain RD03_RS14380 PF00403 Heavy-metal-associated domain RD03_RS14400 PF08240 Alcohol dehydrogenase GroES-like domain RD03_RS14400 PF00107 Zinc-binding dehydrogenase RD03_RS14415 PF00005 ABC transporter RD03_RS14420 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS14430 PF00501 AMP-binding enzyme RD03_RS14430 PF13193 AMP-binding enzyme C-terminal domain RD03_RS14440 PF13404 AsnC-type helix-turn-helix domain RD03_RS14440 PF01037 Lrp/AsnC ligand binding domain RD03_RS14445 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS14450 PF00677 Lumazine binding domain RD03_RS14455 PF01425 Amidase RD03_RS14470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS14470 PF03466 LysR substrate binding domain RD03_RS14475 PF07690 Major Facilitator Superfamily RD03_RS14480 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD03_RS14490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS14490 PF03466 LysR substrate binding domain RD03_RS14505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD03_RS14510 PF00005 ABC transporter RD03_RS14525 PF02653 Branched-chain amino acid transport system / permease component RD03_RS14530 PF01042 Endoribonuclease L-PSP RD03_RS14535 PF13193 AMP-binding enzyme C-terminal domain RD03_RS14535 PF00501 AMP-binding enzyme RD03_RS14545 PF01614 Bacterial transcriptional regulator RD03_RS14545 PF09339 IclR helix-turn-helix domain RD03_RS14560 PF00005 ABC transporter RD03_RS14565 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS14580 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS14585 PF02515 CoA-transferase family III RD03_RS14590 PF01425 Amidase RD03_RS14600 PF00392 Bacterial regulatory proteins, gntR family RD03_RS14600 PF07729 FCD domain RD03_RS14610 PF01594 AI-2E family transporter RD03_RS14630 PF01322 Cytochrome C' RD03_RS14635 PF08328 Adenylosuccinate lyase C-terminal RD03_RS14635 PF00206 Lyase RD03_RS14640 PF13417 Glutathione S-transferase, N-terminal domain RD03_RS14640 PF00043 Glutathione S-transferase, C-terminal domain RD03_RS14645 PF01925 Sulfite exporter TauE/SafE RD03_RS14655 PF03466 LysR substrate binding domain RD03_RS14655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS14660 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS14670 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RD03_RS14670 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RD03_RS14675 PF02233 NAD(P) transhydrogenase beta subunit RD03_RS14685 PF00593 TonB dependent receptor RD03_RS14685 PF07715 TonB-dependent Receptor Plug Domain RD03_RS14690 PF00756 Putative esterase RD03_RS14695 PF13183 4Fe-4S dicluster domain RD03_RS14695 PF02754 Cysteine-rich domain RD03_RS14700 PF01565 FAD binding domain RD03_RS14705 PF01565 FAD binding domain RD03_RS14705 PF02913 FAD linked oxidases, C-terminal domain RD03_RS14710 PF02913 FAD linked oxidases, C-terminal domain RD03_RS14710 PF01565 FAD binding domain RD03_RS14715 PF13332 Hemagglutinin repeat RD03_RS14715 PF13018 Extended Signal Peptide of Type V secretion system RD03_RS14715 PF05594 Haemagluttinin repeat RD03_RS14715 PF05860 haemagglutination activity domain RD03_RS14715 PF13018 Extended Signal Peptide of Type V secretion system RD03_RS14715 PF13332 Hemagglutinin repeat RD03_RS14715 PF05860 haemagglutination activity domain RD03_RS14715 PF05594 Haemagluttinin repeat RD03_RS14720 PF00793 DAHP synthetase I family RD03_RS14725 PF01523 Putative modulator of DNA gyrase RD03_RS14730 PF00795 Carbon-nitrogen hydrolase RD03_RS14750 PF08281 Sigma-70, region 4 RD03_RS14750 PF04542 Sigma-70 region 2 RD03_RS14760 PF04461 Protein of unknown function (DUF520) RD03_RS14775 PF01476 LysM domain RD03_RS14775 PF01551 Peptidase family M23 RD03_RS14790 PF00593 TonB dependent receptor RD03_RS14790 PF07715 TonB-dependent Receptor Plug Domain RD03_RS14805 PF05114 Protein of unknown function (DUF692) RD03_RS14825 PF01022 Bacterial regulatory protein, arsR family RD03_RS14830 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD03_RS14835 PF00510 Cytochrome c oxidase subunit III RD03_RS14840 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD03_RS14845 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD03_RS14845 PF06481 COX Aromatic Rich Motif RD03_RS14850 PF00072 Response regulator receiver domain RD03_RS14865 PF05726 Pirin C-terminal cupin domain RD03_RS14865 PF02678 Pirin RD03_RS14885 PF02515 CoA-transferase family III RD03_RS14890 PF03466 LysR substrate binding domain RD03_RS14890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS14895 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS14905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS14905 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS14905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS14905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS14905 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS14905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS14920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD03_RS14920 PF01872 RibD C-terminal domain RD03_RS14935 PF03477 ATP cone domain RD03_RS14940 PF00464 Serine hydroxymethyltransferase RD03_RS14950 PF00579 tRNA synthetases class I (W and Y) RD03_RS14950 PF01479 S4 domain RD03_RS14960 PF08460 Bacterial SH3 domain RD03_RS14960 PF01551 Peptidase family M23 RD03_RS14965 PF03702 Anhydro-N-acetylmuramic acid kinase RD03_RS14970 PF01521 Iron-sulphur cluster biosynthesis RD03_RS14980 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD03_RS14980 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD03_RS14985 PF00380 Ribosomal protein S9/S16 RD03_RS14990 PF00572 Ribosomal protein L13 RD03_RS14995 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS15000 PF01523 Putative modulator of DNA gyrase RD03_RS15005 PF04751 Protein of unknown function (DUF615) RD03_RS15010 PF02230 Phospholipase/Carboxylesterase RD03_RS15020 PF00005 ABC transporter RD03_RS15025 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS15030 PF00857 Isochorismatase family RD03_RS15035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD03_RS15040 PF00270 DEAD/DEAH box helicase RD03_RS15040 PF00271 Helicase conserved C-terminal domain RD03_RS15040 PF03880 DbpA RNA binding domain RD03_RS15050 PF00392 Bacterial regulatory proteins, gntR family RD03_RS15050 PF07729 FCD domain RD03_RS15060 PF00583 Acetyltransferase (GNAT) family RD03_RS15060 PF13607 Succinyl-CoA ligase like flavodoxin domain RD03_RS15060 PF13380 CoA binding domain RD03_RS15065 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD03_RS15080 PF01037 Lrp/AsnC ligand binding domain RD03_RS15095 PF03477 ATP cone domain RD03_RS15095 PF00317 Ribonucleotide reductase, all-alpha domain RD03_RS15095 PF02867 Ribonucleotide reductase, barrel domain RD03_RS15100 PF00268 Ribonucleotide reductase, small chain RD03_RS15115 PF00501 AMP-binding enzyme RD03_RS15115 PF13193 AMP-binding enzyme C-terminal domain RD03_RS15120 PF03062 MBOAT, membrane-bound O-acyltransferase family RD03_RS15145 PF00294 pfkB family carbohydrate kinase RD03_RS15160 PF02785 Biotin carboxylase C-terminal domain RD03_RS15160 PF00289 Biotin carboxylase, N-terminal domain RD03_RS15160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD03_RS15165 PF00364 Biotin-requiring enzyme RD03_RS15170 PF01220 Dehydroquinase class II RD03_RS15175 PF08534 Redoxin RD03_RS15180 PF08245 Mur ligase middle domain RD03_RS15180 PF02875 Mur ligase family, glutamate ligase domain RD03_RS15180 PF01225 Mur ligase family, catalytic domain RD03_RS15185 PF05728 Uncharacterised protein family (UPF0227) RD03_RS15190 PF00773 RNB domain RD03_RS15200 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RD03_RS15200 PF01488 Shikimate / quinate 5-dehydrogenase RD03_RS15200 PF08501 Shikimate dehydrogenase substrate binding domain RD03_RS15210 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RD03_RS15220 PF01037 Lrp/AsnC ligand binding domain RD03_RS15225 PF01266 FAD dependent oxidoreductase RD03_RS15230 PF00106 short chain dehydrogenase RD03_RS15240 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS15250 PF07516 SecA Wing and Scaffold domain RD03_RS15250 PF02810 SEC-C motif RD03_RS15250 PF01043 SecA preprotein cross-linking domain RD03_RS15250 PF07517 SecA DEAD-like domain RD03_RS15255 PF01476 LysM domain RD03_RS15255 PF01551 Peptidase family M23 RD03_RS15255 PF08525 Opacity-associated protein A N-terminal motif RD03_RS15265 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RD03_RS15270 PF12327 FtsZ family, C-terminal domain RD03_RS15270 PF00091 Tubulin/FtsZ family, GTPase domain RD03_RS15275 PF02491 SHS2 domain inserted in FTSA RD03_RS15280 PF03799 Cell division protein FtsQ RD03_RS15280 PF08478 POTRA domain, FtsQ-type RD03_RS15285 PF07478 D-ala D-ala ligase C-terminus RD03_RS15285 PF01820 D-ala D-ala ligase N-terminus RD03_RS15290 PF01225 Mur ligase family, catalytic domain RD03_RS15290 PF08245 Mur ligase middle domain RD03_RS15290 PF02875 Mur ligase family, glutamate ligase domain RD03_RS15295 PF04101 Glycosyltransferase family 28 C-terminal domain RD03_RS15295 PF03033 Glycosyltransferase family 28 N-terminal domain RD03_RS15300 PF01098 Cell cycle protein RD03_RS15305 PF08245 Mur ligase middle domain RD03_RS15305 PF02875 Mur ligase family, glutamate ligase domain RD03_RS15310 PF00953 Glycosyl transferase family 4 RD03_RS15315 PF02875 Mur ligase family, glutamate ligase domain RD03_RS15315 PF08245 Mur ligase middle domain RD03_RS15320 PF03717 Penicillin-binding Protein dimerisation domain RD03_RS15320 PF00905 Penicillin binding protein transpeptidase domain RD03_RS15325 PF04999 Cell division protein FtsL RD03_RS15330 PF01795 MraW methylase family RD03_RS15335 PF02381 MraZ protein, putative antitoxin-like RD03_RS15345 PF16326 ABC transporter C-terminal domain RD03_RS15345 PF12848 ABC transporter RD03_RS15345 PF00005 ABC transporter RD03_RS15350 PF01979 Amidohydrolase family RD03_RS15355 PF07687 Peptidase dimerisation domain RD03_RS15355 PF01546 Peptidase family M20/M25/M40 RD03_RS15395 PF01037 Lrp/AsnC ligand binding domain RD03_RS15400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD03_RS15405 PF01625 Peptide methionine sulfoxide reductase RD03_RS15410 PF00034 Cytochrome c RD03_RS15415 PF00920 Dehydratase family RD03_RS15420 PF01790 Prolipoprotein diacylglyceryl transferase RD03_RS15460 PF01970 Tripartite tricarboxylate transporter TctA family RD03_RS15470 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD03_RS15470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD03_RS15475 PF02525 Flavodoxin-like fold RD03_RS15490 PF01923 Cobalamin adenosyltransferase RD03_RS15500 PF00004 ATPase family associated with various cellular activities (AAA) RD03_RS15500 PF07724 AAA domain (Cdc48 subfamily) RD03_RS15500 PF10431 C-terminal, D2-small domain, of ClpB protein RD03_RS15505 PF00227 Proteasome subunit RD03_RS15510 PF01258 Prokaryotic dksA/traR C4-type zinc finger RD03_RS15515 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD03_RS15515 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD03_RS15520 PF01475 Ferric uptake regulator family RD03_RS15530 PF00005 ABC transporter RD03_RS15535 PF00950 ABC 3 transport family RD03_RS15540 PF01297 Zinc-uptake complex component A periplasmic RD03_RS15550 PF03824 High-affinity nickel-transport protein RD03_RS15555 PF07715 TonB-dependent Receptor Plug Domain RD03_RS15555 PF00593 TonB dependent receptor RD03_RS15560 PF00589 Phage integrase family RD03_RS15560 PF02899 Phage integrase, N-terminal SAM-like domain RD03_RS15570 PF01678 Diaminopimelate epimerase RD03_RS15575 PF03279 Bacterial lipid A biosynthesis acyltransferase RD03_RS15585 PF00438 S-adenosylmethionine synthetase, N-terminal domain RD03_RS15585 PF02773 S-adenosylmethionine synthetase, C-terminal domain RD03_RS15585 PF02772 S-adenosylmethionine synthetase, central domain RD03_RS15595 PF00534 Glycosyl transferases group 1 RD03_RS15595 PF13439 Glycosyltransferase Family 4 RD03_RS15600 PF05221 S-adenosyl-L-homocysteine hydrolase RD03_RS15600 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RD03_RS15605 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RD03_RS15610 PF02219 Methylenetetrahydrofolate reductase RD03_RS15620 PF03466 LysR substrate binding domain RD03_RS15620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS15625 PF00850 Histone deacetylase domain RD03_RS15630 PF00083 Sugar (and other) transporter RD03_RS15630 PF07690 Major Facilitator Superfamily RD03_RS15640 PF14718 Soluble lytic murein transglycosylase L domain RD03_RS15640 PF01464 Transglycosylase SLT domain RD03_RS15645 PF12627 Probable RNA and SrmB- binding site of polymerase A RD03_RS15645 PF01743 Poly A polymerase head domain RD03_RS15655 PF00270 DEAD/DEAH box helicase RD03_RS15655 PF00271 Helicase conserved C-terminal domain RD03_RS15660 PF03167 Uracil DNA glycosylase superfamily RD03_RS15670 PF13091 PLD-like domain RD03_RS15675 PF00005 ABC transporter RD03_RS15675 PF03459 TOBE domain RD03_RS15680 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS15690 PF00561 alpha/beta hydrolase fold RD03_RS15735 PF01810 LysE type translocator RD03_RS15745 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS15760 PF01266 FAD dependent oxidoreductase RD03_RS15785 PF00440 Bacterial regulatory proteins, tetR family RD03_RS15785 PF17938 Tetracyclin repressor-like, C-terminal domain RD03_RS15800 PF00486 Transcriptional regulatory protein, C terminal RD03_RS15800 PF00072 Response regulator receiver domain RD03_RS15810 PF12951 Passenger-associated-transport-repeat RD03_RS15820 PF13361 UvrD-like helicase C-terminal domain RD03_RS15820 PF00580 UvrD/REP helicase N-terminal domain RD03_RS15845 PF13175 AAA ATPase domain RD03_RS15850 PF01555 DNA methylase RD03_RS15865 PF13356 Arm DNA-binding domain RD03_RS15865 PF00589 Phage integrase family RD03_RS15870 PF01926 50S ribosome-binding GTPase RD03_RS15870 PF06071 Protein of unknown function (DUF933) RD03_RS15880 PF01195 Peptidyl-tRNA hydrolase RD03_RS15885 PF14693 Ribosomal protein TL5, C-terminal domain RD03_RS15885 PF01386 Ribosomal L25p family RD03_RS15890 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RD03_RS15890 PF14572 Phosphoribosyl synthetase-associated domain RD03_RS15900 PF00288 GHMP kinases N terminal domain RD03_RS15900 PF08544 GHMP kinases C terminal RD03_RS15905 PF03550 Outer membrane lipoprotein LolB RD03_RS15915 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RD03_RS15915 PF06827 Zinc finger found in FPG and IleRS RD03_RS15915 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RD03_RS15925 PF01494 FAD binding domain RD03_RS15935 PF03466 LysR substrate binding domain RD03_RS15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS15940 PF04209 homogentisate 1,2-dioxygenase RD03_RS15950 PF00884 Sulfatase RD03_RS15955 PF08521 Two-component sensor kinase N-terminal RD03_RS15955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS15955 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS15960 PF00072 Response regulator receiver domain RD03_RS15960 PF00486 Transcriptional regulatory protein, C terminal RD03_RS15965 PF02913 FAD linked oxidases, C-terminal domain RD03_RS15965 PF01565 FAD binding domain RD03_RS15975 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD03_RS15975 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD03_RS15975 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD03_RS15975 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD03_RS15980 PF00342 Phosphoglucose isomerase RD03_RS15985 PF13477 Glycosyl transferase 4-like RD03_RS15985 PF00534 Glycosyl transferases group 1 RD03_RS15990 PF13439 Glycosyltransferase Family 4 RD03_RS15990 PF00534 Glycosyl transferases group 1 RD03_RS15995 PF13439 Glycosyltransferase Family 4 RD03_RS15995 PF00534 Glycosyl transferases group 1 RD03_RS16000 PF13537 Glutamine amidotransferase domain RD03_RS16000 PF00733 Asparagine synthase RD03_RS16005 PF13439 Glycosyltransferase Family 4 RD03_RS16005 PF00534 Glycosyl transferases group 1 RD03_RS16010 PF03023 Lipid II flippase MurJ RD03_RS16015 PF01370 NAD dependent epimerase/dehydratase family RD03_RS16020 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD03_RS16020 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD03_RS16020 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD03_RS16025 PF00953 Glycosyl transferase family 4 RD03_RS16030 PF03232 Ubiquinone biosynthesis protein COQ7 RD03_RS16040 PF00303 Thymidylate synthase RD03_RS16045 PF00186 Dihydrofolate reductase RD03_RS16050 PF00392 Bacterial regulatory proteins, gntR family RD03_RS16050 PF00155 Aminotransferase class I and II RD03_RS16055 PF00202 Aminotransferase class-III RD03_RS16060 PF00171 Aldehyde dehydrogenase family RD03_RS16065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS16070 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS16075 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS16085 PF07171 MlrC C-terminus RD03_RS16085 PF07364 Metallopeptidase family M81 RD03_RS16095 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD03_RS16100 PF01730 UreF RD03_RS16105 PF05194 UreE urease accessory protein, C-terminal domain RD03_RS16105 PF02814 UreE urease accessory protein, N-terminal domain RD03_RS16110 PF00449 Urease alpha-subunit, N-terminal domain RD03_RS16110 PF01979 Amidohydrolase family RD03_RS16115 PF00699 Urease beta subunit RD03_RS16120 PF04955 HupE / UreJ protein RD03_RS16125 PF00547 Urease, gamma subunit RD03_RS16130 PF01774 UreD urease accessory protein RD03_RS16135 PF09278 MerR, DNA binding RD03_RS16135 PF00376 MerR family regulatory protein RD03_RS16140 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS16155 PF00392 Bacterial regulatory proteins, gntR family RD03_RS16155 PF07702 UTRA domain RD03_RS16160 PF07476 Methylaspartate ammonia-lyase C-terminus RD03_RS16160 PF05034 Methylaspartate ammonia-lyase N-terminus RD03_RS16165 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS16180 PF04293 SpoVR like protein RD03_RS16185 PF04285 Protein of unknown function (DUF444) RD03_RS16205 PF02515 CoA-transferase family III RD03_RS16210 PF00501 AMP-binding enzyme RD03_RS16210 PF14535 AMP-binding enzyme C-terminal domain RD03_RS16215 PF00440 Bacterial regulatory proteins, tetR family RD03_RS16215 PF08361 MAATS-type transcriptional repressor, C-terminal region RD03_RS16220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS16220 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS16220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS16230 PF02653 Branched-chain amino acid transport system / permease component RD03_RS16235 PF00005 ABC transporter RD03_RS16240 PF00005 ABC transporter RD03_RS16240 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD03_RS16250 PF00106 short chain dehydrogenase RD03_RS16255 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS16265 PF00108 Thiolase, N-terminal domain RD03_RS16265 PF02803 Thiolase, C-terminal domain RD03_RS16270 PF01575 MaoC like domain RD03_RS16315 PF00075 RNase H RD03_RS16320 PF08241 Methyltransferase domain RD03_RS16325 PF00753 Metallo-beta-lactamase superfamily RD03_RS16325 PF16123 Hydroxyacylglutathione hydrolase C-terminus RD03_RS16330 PF01476 LysM domain RD03_RS16330 PF01464 Transglycosylase SLT domain RD03_RS16350 PF04391 Protein of unknown function (DUF533) RD03_RS16355 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS16370 PF00072 Response regulator receiver domain RD03_RS16370 PF00486 Transcriptional regulatory protein, C terminal RD03_RS16375 PF13493 Domain of unknown function (DUF4118) RD03_RS16375 PF02702 Osmosensitive K+ channel His kinase sensor domain RD03_RS16375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS16385 PF01654 Cytochrome bd terminal oxidase subunit I RD03_RS16390 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD03_RS16390 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RD03_RS16395 PF03775 Septum formation inhibitor MinC, C-terminal domain RD03_RS16395 PF05209 Septum formation inhibitor MinC, N-terminal domain RD03_RS16400 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RD03_RS16405 PF03776 Septum formation topological specificity factor MinE RD03_RS16425 PF12848 ABC transporter RD03_RS16425 PF00005 ABC transporter RD03_RS16435 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS16440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS16445 PF00535 Glycosyl transferase family 2 RD03_RS16450 PF03466 LysR substrate binding domain RD03_RS16450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS16460 PF00005 ABC transporter RD03_RS16460 PF17755 UvrA DNA-binding domain RD03_RS16460 PF17760 UvrA interaction domain RD03_RS16465 PF04715 Anthranilate synthase component I, N terminal region RD03_RS16465 PF00425 chorismate binding enzyme RD03_RS16470 PF01063 Amino-transferase class IV RD03_RS16485 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS16490 PF13193 AMP-binding enzyme C-terminal domain RD03_RS16490 PF00501 AMP-binding enzyme RD03_RS16495 PF00392 Bacterial regulatory proteins, gntR family RD03_RS16495 PF07702 UTRA domain RD03_RS16500 PF00899 ThiF family RD03_RS16505 PF07690 Major Facilitator Superfamily RD03_RS16515 PF01243 Pyridoxamine 5'-phosphate oxidase RD03_RS16515 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RD03_RS16520 PF01613 Flavin reductase like domain RD03_RS16530 PF00551 Formyl transferase RD03_RS16535 PF03466 LysR substrate binding domain RD03_RS16535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS16540 PF18158 Adaptive response protein AidB N-terminal domain RD03_RS16540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS16540 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS16565 PF00218 Indole-3-glycerol phosphate synthase RD03_RS16570 PF02885 Glycosyl transferase family, helical bundle domain RD03_RS16570 PF00591 Glycosyl transferase family, a/b domain RD03_RS16575 PF00117 Glutamine amidotransferase class-I RD03_RS16580 PF04715 Anthranilate synthase component I, N terminal region RD03_RS16580 PF00425 chorismate binding enzyme RD03_RS16585 PF13419 Haloacid dehalogenase-like hydrolase RD03_RS16590 PF00834 Ribulose-phosphate 3 epimerase family RD03_RS16595 PF04379 ApaG domain RD03_RS16600 PF06725 3D domain RD03_RS16600 PF03562 MltA specific insert domain RD03_RS16605 PF01494 FAD binding domain RD03_RS16610 PF13098 Thioredoxin-like domain RD03_RS16610 PF10411 Disulfide bond isomerase protein N-terminus RD03_RS16615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD03_RS16615 PF01842 ACT domain RD03_RS16615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD03_RS16625 PF01171 PP-loop family RD03_RS16635 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS16635 PF13192 Thioredoxin domain RD03_RS16640 PF17820 PDZ domain RD03_RS16640 PF13180 PDZ domain RD03_RS16645 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS16670 PF00119 ATP synthase A chain RD03_RS16675 PF00137 ATP synthase subunit C RD03_RS16680 PF00430 ATP synthase B/B' CF(0) RD03_RS16685 PF00213 ATP synthase delta (OSCP) subunit RD03_RS16690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD03_RS16690 PF00306 ATP synthase alpha/beta chain, C terminal domain RD03_RS16690 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD03_RS16695 PF00231 ATP synthase RD03_RS16700 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD03_RS16700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD03_RS16705 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RD03_RS16715 PF01208 Uroporphyrinogen decarboxylase (URO-D) RD03_RS16720 PF00271 Helicase conserved C-terminal domain RD03_RS16720 PF17764 3′ DNA-binding domain (3′BD) RD03_RS16720 PF18074 Primosomal protein N C-terminal domain RD03_RS16720 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RD03_RS16720 PF00270 DEAD/DEAH box helicase RD03_RS16725 PF13361 UvrD-like helicase C-terminal domain RD03_RS16725 PF00580 UvrD/REP helicase N-terminal domain RD03_RS16735 PF07687 Peptidase dimerisation domain RD03_RS16735 PF01546 Peptidase family M20/M25/M40 RD03_RS16745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS16745 PF00005 ABC transporter RD03_RS16750 PF12911 N-terminal TM domain of oligopeptide transport permease C RD03_RS16750 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS16755 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS16775 PF01256 Carbohydrate kinase RD03_RS16780 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS16785 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS16800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS16800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS16800 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS16805 PF02515 CoA-transferase family III RD03_RS16810 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RD03_RS16810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD03_RS16810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD03_RS16840 PF07732 Multicopper oxidase RD03_RS16840 PF07731 Multicopper oxidase RD03_RS16840 PF00394 Multicopper oxidase RD03_RS16845 PF05275 Copper resistance protein B precursor (CopB) RD03_RS16850 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS16850 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD03_RS16850 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD03_RS16865 PF01614 Bacterial transcriptional regulator RD03_RS16865 PF09339 IclR helix-turn-helix domain RD03_RS16870 PF05995 Cysteine dioxygenase type I RD03_RS16875 PF01425 Amidase RD03_RS16880 PF13458 Periplasmic binding protein RD03_RS16905 PF13091 PLD-like domain RD03_RS16910 PF03372 Endonuclease/Exonuclease/phosphatase family RD03_RS16915 PF00152 tRNA synthetases class II (D, K and N) RD03_RS16915 PF01336 OB-fold nucleic acid binding domain RD03_RS16915 PF02938 GAD domain RD03_RS16935 PF00732 GMC oxidoreductase RD03_RS16935 PF05199 GMC oxidoreductase RD03_RS16945 PF00593 TonB dependent receptor RD03_RS16945 PF07715 TonB-dependent Receptor Plug Domain RD03_RS16950 PF01370 NAD dependent epimerase/dehydratase family RD03_RS16950 PF02222 ATP-grasp domain RD03_RS16955 PF00571 CBS domain RD03_RS16955 PF01380 SIS domain RD03_RS16975 PF00005 ABC transporter RD03_RS16980 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RD03_RS16985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RD03_RS16990 PF02603 HPr Serine kinase N terminus RD03_RS16990 PF07475 HPr Serine kinase C-terminal domain RD03_RS16995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD03_RS16995 PF00034 Cytochrome c RD03_RS16995 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD03_RS17005 PF03668 P-loop ATPase protein family RD03_RS17010 PF05036 Sporulation related domain RD03_RS17010 PF03330 Lytic transglycolase RD03_RS17030 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD03_RS17030 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD03_RS17035 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS17035 PF01799 [2Fe-2S] binding domain RD03_RS17040 PF00941 FAD binding domain in molybdopterin dehydrogenase RD03_RS17040 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD03_RS17045 PF09084 NMT1/THI5 like RD03_RS17050 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17055 PF02441 Flavoprotein RD03_RS17060 PF00462 Glutaredoxin RD03_RS17065 PF05175 Methyltransferase small domain RD03_RS17065 PF17827 PrmC N-terminal domain RD03_RS17070 PF03462 PCRF domain RD03_RS17070 PF00472 RF-1 domain RD03_RS17075 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RD03_RS17075 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RD03_RS17075 PF01488 Shikimate / quinate 5-dehydrogenase RD03_RS17095 PF00384 Molybdopterin oxidoreductase RD03_RS17095 PF01568 Molydopterin dinucleotide binding domain RD03_RS17110 PF13607 Succinyl-CoA ligase like flavodoxin domain RD03_RS17110 PF13380 CoA binding domain RD03_RS17110 PF00583 Acetyltransferase (GNAT) family RD03_RS17115 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17120 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD03_RS17120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS17120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS17120 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS17125 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD03_RS17125 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD03_RS17125 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS17130 PF00108 Thiolase, N-terminal domain RD03_RS17130 PF02803 Thiolase, C-terminal domain RD03_RS17135 PF01037 Lrp/AsnC ligand binding domain RD03_RS17140 PF01380 SIS domain RD03_RS17145 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RD03_RS17150 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17160 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS17165 PF13380 CoA binding domain RD03_RS17165 PF13607 Succinyl-CoA ligase like flavodoxin domain RD03_RS17170 PF03466 LysR substrate binding domain RD03_RS17170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS17175 PF08240 Alcohol dehydrogenase GroES-like domain RD03_RS17175 PF00107 Zinc-binding dehydrogenase RD03_RS17185 PF01042 Endoribonuclease L-PSP RD03_RS17195 PF07687 Peptidase dimerisation domain RD03_RS17195 PF01546 Peptidase family M20/M25/M40 RD03_RS17200 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS17205 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS17205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS17210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS17210 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS17210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS17215 PF01565 FAD binding domain RD03_RS17215 PF09330 D-lactate dehydrogenase, membrane binding RD03_RS17220 PF03466 LysR substrate binding domain RD03_RS17220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS17225 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17250 PF00701 Dihydrodipicolinate synthetase family RD03_RS17255 PF03466 LysR substrate binding domain RD03_RS17255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS17260 PF02515 CoA-transferase family III RD03_RS17265 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS17270 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS17270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS17275 PF01575 MaoC like domain RD03_RS17290 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD03_RS17290 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD03_RS17295 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS17300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS17300 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS17300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS17305 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17310 PF13607 Succinyl-CoA ligase like flavodoxin domain RD03_RS17310 PF13380 CoA binding domain RD03_RS17320 PF00676 Dehydrogenase E1 component RD03_RS17325 PF02779 Transketolase, pyrimidine binding domain RD03_RS17325 PF02780 Transketolase, C-terminal domain RD03_RS17330 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS17335 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD03_RS17335 PF00364 Biotin-requiring enzyme RD03_RS17335 PF02817 e3 binding domain RD03_RS17340 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS17340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS17340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS17345 PF13193 AMP-binding enzyme C-terminal domain RD03_RS17345 PF00501 AMP-binding enzyme RD03_RS17355 PF13458 Periplasmic binding protein RD03_RS17360 PF02653 Branched-chain amino acid transport system / permease component RD03_RS17365 PF00005 ABC transporter RD03_RS17365 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD03_RS17370 PF00005 ABC transporter RD03_RS17375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD03_RS17375 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS17390 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17405 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17415 PF00899 ThiF family RD03_RS17420 PF03572 Peptidase family S41 RD03_RS17420 PF13180 PDZ domain RD03_RS17425 PF01551 Peptidase family M23 RD03_RS17430 PF00300 Histidine phosphatase superfamily (branch 1) RD03_RS17435 PF00581 Rhodanese-like domain RD03_RS17435 PF12368 Rhodanase C-terminal RD03_RS17435 PF17773 UPF0176 acylphosphatase like domain RD03_RS17440 PF00462 Glutaredoxin RD03_RS17445 PF02556 Preprotein translocase subunit SecB RD03_RS17450 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RD03_RS17450 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RD03_RS17455 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17460 PF00588 SpoU rRNA Methylase family RD03_RS17470 PF08241 Methyltransferase domain RD03_RS17475 PF04107 Glutamate-cysteine ligase family 2(GCS2) RD03_RS17480 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD03_RS17490 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS17495 PF00005 ABC transporter RD03_RS17505 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS17505 PF01799 [2Fe-2S] binding domain RD03_RS17510 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD03_RS17510 PF00941 FAD binding domain in molybdopterin dehydrogenase RD03_RS17515 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD03_RS17515 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD03_RS17520 PF03480 Bacterial extracellular solute-binding protein, family 7 RD03_RS17525 PF00355 Rieske [2Fe-2S] domain RD03_RS17530 PF14759 Reductase C-terminal RD03_RS17530 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS17535 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD03_RS17535 PF00355 Rieske [2Fe-2S] domain RD03_RS17545 PF00857 Isochorismatase family RD03_RS17555 PF00561 alpha/beta hydrolase fold RD03_RS17560 PF17645 Arylmalonate decarboxylase RD03_RS17570 PF12804 MobA-like NTP transferase domain RD03_RS17580 PF01047 MarR family RD03_RS17585 PF02386 Cation transport protein RD03_RS17590 PF02254 TrkA-N domain RD03_RS17590 PF02080 TrkA-C domain RD03_RS17595 PF00072 Response regulator receiver domain RD03_RS17595 PF00158 Sigma-54 interaction domain RD03_RS17595 PF02954 Bacterial regulatory protein, Fis family RD03_RS17600 PF00989 PAS fold RD03_RS17600 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS17600 PF00672 HAMP domain RD03_RS17600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS17610 PF01189 16S rRNA methyltransferase RsmB/F RD03_RS17610 PF01029 NusB family RD03_RS17620 PF01958 Domain of unknown function DUF108 RD03_RS17620 PF03447 Homoserine dehydrogenase, NAD binding domain RD03_RS17640 PF01810 LysE type translocator RD03_RS17645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS17645 PF03466 LysR substrate binding domain RD03_RS17655 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17660 PF01168 Alanine racemase, N-terminal domain RD03_RS17665 PF00155 Aminotransferase class I and II RD03_RS17670 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS17680 PF00682 HMGL-like RD03_RS17685 PF17782 DprA winged helix domain RD03_RS17685 PF02481 DNA recombination-mediator protein A RD03_RS17690 PF01037 Lrp/AsnC ligand binding domain RD03_RS17695 PF00266 Aminotransferase class-V RD03_RS17700 PF01327 Polypeptide deformylase RD03_RS17710 PF00551 Formyl transferase RD03_RS17710 PF02911 Formyl transferase, C-terminal domain RD03_RS17720 PF13419 Haloacid dehalogenase-like hydrolase RD03_RS17730 PF03641 Possible lysine decarboxylase RD03_RS17740 PF18693 TRAM domain RD03_RS17740 PF04055 Radical SAM superfamily RD03_RS17740 PF00919 Uncharacterized protein family UPF0004 RD03_RS17745 PF01361 Tautomerase enzyme RD03_RS17750 PF01266 FAD dependent oxidoreductase RD03_RS17755 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17760 PF00392 Bacterial regulatory proteins, gntR family RD03_RS17760 PF07729 FCD domain RD03_RS17770 PF00202 Aminotransferase class-III RD03_RS17775 PF00491 Arginase family RD03_RS17785 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17790 PF02627 Carboxymuconolactone decarboxylase family RD03_RS17795 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS17800 PF09339 IclR helix-turn-helix domain RD03_RS17800 PF01614 Bacterial transcriptional regulator RD03_RS17805 PF13193 AMP-binding enzyme C-terminal domain RD03_RS17805 PF00501 AMP-binding enzyme RD03_RS17810 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS17820 PF12951 Passenger-associated-transport-repeat RD03_RS17820 PF12951 Passenger-associated-transport-repeat RD03_RS17840 PF03466 LysR substrate binding domain RD03_RS17840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS17850 PF14031 Putative serine dehydratase domain RD03_RS17850 PF01168 Alanine racemase, N-terminal domain RD03_RS17855 PF07411 Domain of unknown function (DUF1508) RD03_RS17860 PF01145 SPFH domain / Band 7 family RD03_RS17870 PF01042 Endoribonuclease L-PSP RD03_RS17915 PF03837 RecT family RD03_RS17950 PF00589 Phage integrase family RD03_RS17955 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS17955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS17970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS17970 PF03466 LysR substrate binding domain RD03_RS17975 PF02525 Flavodoxin-like fold RD03_RS17985 PF14849 YidC periplasmic domain RD03_RS17985 PF02096 60Kd inner membrane protein RD03_RS17990 PF01809 Putative membrane protein insertion efficiency factor RD03_RS17995 PF00825 Ribonuclease P RD03_RS18000 PF00468 Ribosomal protein L34 RD03_RS18005 PF08299 Bacterial dnaA protein helix-turn-helix RD03_RS18005 PF00308 Bacterial dnaA protein RD03_RS18005 PF11638 DnaA N-terminal domain RD03_RS18010 PF00712 DNA polymerase III beta subunit, N-terminal domain RD03_RS18010 PF02768 DNA polymerase III beta subunit, C-terminal domain RD03_RS18010 PF02767 DNA polymerase III beta subunit, central domain RD03_RS18015 PF00986 DNA gyrase B subunit, carboxyl terminus RD03_RS18015 PF18053 DNA gyrase B subunit insert domain RD03_RS18015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS18015 PF01751 Toprim domain RD03_RS18015 PF00204 DNA gyrase B RD03_RS18020 PF01614 Bacterial transcriptional regulator RD03_RS18020 PF09339 IclR helix-turn-helix domain RD03_RS18025 PF01425 Amidase RD03_RS18030 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS18040 PF01070 FMN-dependent dehydrogenase RD03_RS18065 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS18065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS18065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS18070 PF00376 MerR family regulatory protein RD03_RS18070 PF09278 MerR, DNA binding RD03_RS18085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD03_RS18085 PF02770 Acyl-CoA dehydrogenase, middle domain RD03_RS18085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD03_RS18095 PF02803 Thiolase, C-terminal domain RD03_RS18095 PF00108 Thiolase, N-terminal domain RD03_RS18100 PF01039 Carboxyl transferase domain RD03_RS18105 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD03_RS18105 PF00364 Biotin-requiring enzyme RD03_RS18105 PF00289 Biotin carboxylase, N-terminal domain RD03_RS18105 PF02785 Biotin carboxylase C-terminal domain RD03_RS18115 PF00202 Aminotransferase class-III RD03_RS18120 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS18125 PF01168 Alanine racemase, N-terminal domain RD03_RS18125 PF14031 Putative serine dehydratase domain RD03_RS18130 PF16868 NMT1-like family RD03_RS18140 PF07715 TonB-dependent Receptor Plug Domain RD03_RS18140 PF00593 TonB dependent receptor RD03_RS18145 PF04361 Protein of unknown function (DUF494) RD03_RS18160 PF01131 DNA topoisomerase RD03_RS18160 PF01751 Toprim domain RD03_RS18170 PF00005 ABC transporter RD03_RS18175 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS18185 PF00171 Aldehyde dehydrogenase family RD03_RS18195 PF00205 Thiamine pyrophosphate enzyme, central domain RD03_RS18195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD03_RS18195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD03_RS18200 PF01037 Lrp/AsnC ligand binding domain RD03_RS18205 PF01062 Bestrophin, RFP-TM, chloride channel RD03_RS18215 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD03_RS18230 PF02574 Homocysteine S-methyltransferase RD03_RS18230 PF00809 Pterin binding enzyme RD03_RS18230 PF02965 Vitamin B12 dependent methionine synthase, activation domain RD03_RS18230 PF02607 B12 binding domain RD03_RS18230 PF02310 B12 binding domain RD03_RS18235 PF07715 TonB-dependent Receptor Plug Domain RD03_RS18235 PF00593 TonB dependent receptor RD03_RS18240 PF01497 Periplasmic binding protein RD03_RS18245 PF05690 Thiazole biosynthesis protein ThiG RD03_RS18250 PF08543 Phosphomethylpyrimidine kinase RD03_RS18265 PF02321 Outer membrane efflux protein RD03_RS18270 PF01467 Cytidylyltransferase-like RD03_RS18280 PF01594 AI-2E family transporter RD03_RS18290 PF07885 Ion channel RD03_RS18290 PF02254 TrkA-N domain RD03_RS18300 PF00164 Ribosomal protein S12/S23 RD03_RS18305 PF00177 Ribosomal protein S7p/S5e RD03_RS18310 PF03144 Elongation factor Tu domain 2 RD03_RS18310 PF03764 Elongation factor G, domain IV RD03_RS18310 PF00679 Elongation factor G C-terminus RD03_RS18310 PF00009 Elongation factor Tu GTP binding domain RD03_RS18310 PF14492 Elongation Factor G, domain II RD03_RS18315 PF03144 Elongation factor Tu domain 2 RD03_RS18315 PF00009 Elongation factor Tu GTP binding domain RD03_RS18315 PF03143 Elongation factor Tu C-terminal domain RD03_RS18320 PF00338 Ribosomal protein S10p/S20e RD03_RS18325 PF00297 Ribosomal protein L3 RD03_RS18330 PF00573 Ribosomal protein L4/L1 family RD03_RS18335 PF00276 Ribosomal protein L23 RD03_RS18340 PF03947 Ribosomal Proteins L2, C-terminal domain RD03_RS18340 PF00181 Ribosomal Proteins L2, RNA binding domain RD03_RS18345 PF00203 Ribosomal protein S19 RD03_RS18350 PF00237 Ribosomal protein L22p/L17e RD03_RS18355 PF00189 Ribosomal protein S3, C-terminal domain RD03_RS18355 PF07650 KH domain RD03_RS18360 PF00252 Ribosomal protein L16p/L10e RD03_RS18365 PF00831 Ribosomal L29 protein RD03_RS18370 PF00366 Ribosomal protein S17 RD03_RS18380 PF00171 Aldehyde dehydrogenase family RD03_RS18390 PF00238 Ribosomal protein L14p/L23e RD03_RS18395 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RD03_RS18400 PF00673 ribosomal L5P family C-terminus RD03_RS18400 PF00281 Ribosomal protein L5 RD03_RS18405 PF00253 Ribosomal protein S14p/S29e RD03_RS18410 PF00410 Ribosomal protein S8 RD03_RS18415 PF00347 Ribosomal protein L6 RD03_RS18420 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RD03_RS18425 PF00333 Ribosomal protein S5, N-terminal domain RD03_RS18425 PF03719 Ribosomal protein S5, C-terminal domain RD03_RS18430 PF00327 Ribosomal protein L30p/L7e RD03_RS18435 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RD03_RS18440 PF00344 SecY translocase RD03_RS18445 PF01176 Translation initiation factor 1A / IF-1 RD03_RS18450 PF00444 Ribosomal protein L36 RD03_RS18455 PF00416 Ribosomal protein S13/S18 RD03_RS18460 PF00411 Ribosomal protein S11 RD03_RS18465 PF01479 S4 domain RD03_RS18465 PF00163 Ribosomal protein S4/S9 N-terminal domain RD03_RS18470 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RD03_RS18470 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RD03_RS18470 PF01000 RNA polymerase Rpb3/RpoA insert domain RD03_RS18475 PF01196 Ribosomal protein L17 RD03_RS18485 PF03091 CutA1 divalent ion tolerance protein RD03_RS18490 PF02683 Cytochrome C biogenesis protein transmembrane region RD03_RS18490 PF11412 Disulphide bond corrector protein DsbC RD03_RS18495 PF00892 EamA-like transporter family RD03_RS18500 PF00490 Delta-aminolevulinic acid dehydratase RD03_RS18505 PF01926 50S ribosome-binding GTPase RD03_RS18510 PF00034 Cytochrome c RD03_RS18515 PF05140 ResB-like family RD03_RS18520 PF01578 Cytochrome C assembly protein RD03_RS18525 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RD03_RS18525 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD03_RS18530 PF01491 Frataxin-like domain RD03_RS18535 PF00905 Penicillin binding protein transpeptidase domain RD03_RS18535 PF17092 Penicillin-binding protein OB-like domain RD03_RS18535 PF00912 Transglycosylase RD03_RS18540 PF01202 Shikimate kinase RD03_RS18545 PF01761 3-dehydroquinate synthase RD03_RS18550 PF01966 HD domain RD03_RS18550 PF13286 Phosphohydrolase-associated domain RD03_RS18555 PF00043 Glutathione S-transferase, C-terminal domain RD03_RS18555 PF13417 Glutathione S-transferase, N-terminal domain RD03_RS18560 PF17760 UvrA interaction domain RD03_RS18560 PF17755 UvrA DNA-binding domain RD03_RS18565 PF07690 Major Facilitator Superfamily RD03_RS18570 PF00436 Single-strand binding protein family RD03_RS18575 PF00593 TonB dependent receptor RD03_RS18575 PF07715 TonB-dependent Receptor Plug Domain RD03_RS18585 PF03328 HpcH/HpaI aldolase/citrate lyase family RD03_RS18595 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS18605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS18605 PF03466 LysR substrate binding domain RD03_RS18610 PF01979 Amidohydrolase family RD03_RS18615 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS18620 PF13439 Glycosyltransferase Family 4 RD03_RS18620 PF00534 Glycosyl transferases group 1 RD03_RS18630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS18630 PF03466 LysR substrate binding domain RD03_RS18640 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS18645 PF00005 ABC transporter RD03_RS18665 PF01274 Malate synthase RD03_RS18670 PF00392 Bacterial regulatory proteins, gntR family RD03_RS18670 PF07729 FCD domain RD03_RS18685 PF01040 UbiA prenyltransferase family RD03_RS18690 PF00155 Aminotransferase class I and II RD03_RS18695 PF13185 GAF domain RD03_RS18700 PF00701 Dihydrodipicolinate synthetase family RD03_RS18710 PF04972 BON domain RD03_RS18710 PF01476 LysM domain RD03_RS18715 PF05690 Thiazole biosynthesis protein ThiG RD03_RS18715 PF02597 ThiS family RD03_RS18720 PF00561 alpha/beta hydrolase fold RD03_RS18725 PF02390 Putative methyltransferase RD03_RS18740 PF00682 HMGL-like RD03_RS18745 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS18760 PF07702 UTRA domain RD03_RS18760 PF00392 Bacterial regulatory proteins, gntR family RD03_RS18765 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS18775 PF07702 UTRA domain RD03_RS18775 PF00392 Bacterial regulatory proteins, gntR family RD03_RS18780 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS18790 PF00005 ABC transporter RD03_RS18795 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS18800 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS18805 PF08990 Erythronolide synthase docking RD03_RS18805 PF00109 Beta-ketoacyl synthase, N-terminal domain RD03_RS18805 PF08659 KR domain RD03_RS18805 PF00550 Phosphopantetheine attachment site RD03_RS18805 PF14765 Polyketide synthase dehydratase RD03_RS18805 PF00698 Acyl transferase domain RD03_RS18805 PF08240 Alcohol dehydrogenase GroES-like domain RD03_RS18805 PF02801 Beta-ketoacyl synthase, C-terminal domain RD03_RS18805 PF16197 Ketoacyl-synthetase C-terminal extension RD03_RS18810 PF02515 CoA-transferase family III RD03_RS18815 PF00440 Bacterial regulatory proteins, tetR family RD03_RS18820 PF09297 NADH pyrophosphatase zinc ribbon domain RD03_RS18820 PF00293 NUDIX domain RD03_RS18825 PF00175 Oxidoreductase NAD-binding domain RD03_RS18825 PF00111 2Fe-2S iron-sulfur cluster binding domain RD03_RS18825 PF00970 Oxidoreductase FAD-binding domain RD03_RS18830 PF01425 Amidase RD03_RS18840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD03_RS18840 PF03466 LysR substrate binding domain RD03_RS18845 PF13458 Periplasmic binding protein RD03_RS18855 PF00005 ABC transporter RD03_RS18865 PF02653 Branched-chain amino acid transport system / permease component RD03_RS18875 PF00355 Rieske [2Fe-2S] domain RD03_RS18890 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RD03_RS18890 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RD03_RS18905 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD03_RS18905 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD03_RS18905 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD03_RS18910 PF07690 Major Facilitator Superfamily RD03_RS18915 PF00132 Bacterial transferase hexapeptide (six repeats) RD03_RS18915 PF14602 Hexapeptide repeat of succinyl-transferase RD03_RS18915 PF12804 MobA-like NTP transferase domain RD03_RS18935 PF02630 SCO1/SenC RD03_RS18940 PF01040 UbiA prenyltransferase family RD03_RS18945 PF02628 Cytochrome oxidase assembly protein RD03_RS18965 PF00510 Cytochrome c oxidase subunit III RD03_RS18980 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD03_RS18985 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RD03_RS18985 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD03_RS18995 PF00999 Sodium/hydrogen exchanger family RD03_RS19000 PF00149 Calcineurin-like phosphoesterase RD03_RS19005 PF04542 Sigma-70 region 2 RD03_RS19005 PF00140 Sigma-70 factor, region 1.2 RD03_RS19005 PF04545 Sigma-70, region 4 RD03_RS19015 PF00756 Putative esterase RD03_RS19020 PF08240 Alcohol dehydrogenase GroES-like domain RD03_RS19020 PF00107 Zinc-binding dehydrogenase RD03_RS19030 PF01493 GXGXG motif RD03_RS19030 PF00310 Glutamine amidotransferases class-II RD03_RS19030 PF01645 Conserved region in glutamate synthase RD03_RS19030 PF04898 Glutamate synthase central domain RD03_RS19035 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RD03_RS19035 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD03_RS19040 PF03922 OmpW family RD03_RS19045 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS19050 PF00005 ABC transporter RD03_RS19055 PF02405 Permease MlaE RD03_RS19060 PF02470 MlaD protein RD03_RS19065 PF04333 MlaA lipoprotein RD03_RS19075 PF00005 ABC transporter RD03_RS19080 PF01061 ABC-2 type transporter RD03_RS19090 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD03_RS19095 PF01634 ATP phosphoribosyltransferase RD03_RS19100 PF00815 Histidinol dehydrogenase RD03_RS19105 PF00155 Aminotransferase class I and II RD03_RS19110 PF00475 Imidazoleglycerol-phosphate dehydratase RD03_RS19115 PF00117 Glutamine amidotransferase class-I RD03_RS19120 PF00977 Histidine biosynthesis protein RD03_RS19125 PF00977 Histidine biosynthesis protein RD03_RS19130 PF01502 Phosphoribosyl-AMP cyclohydrolase RD03_RS19135 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RD03_RS19140 PF01230 HIT domain RD03_RS19145 PF02416 mttA/Hcf106 family RD03_RS19150 PF02416 mttA/Hcf106 family RD03_RS19155 PF00902 Sec-independent protein translocase protein (TatC) RD03_RS19165 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS19170 PF02917 Pertussis toxin, subunit 1 RD03_RS19175 PF03440 Aerolysin/Pertussis toxin (APT) domain RD03_RS19175 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD03_RS19180 PF09275 Pertussis toxin S4 subunit RD03_RS19185 PF09276 Pertussis toxin S5 subunit RD03_RS19190 PF03440 Aerolysin/Pertussis toxin (APT) domain RD03_RS19190 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD03_RS19195 PF04956 TrbC/VIRB2 family RD03_RS19200 PF05101 Type IV secretory pathway, VirB3-like protein RD03_RS19205 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RD03_RS19210 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RD03_RS19220 PF04335 VirB8 protein RD03_RS19225 PF03524 Conjugal transfer protein RD03_RS19230 PF03743 Bacterial conjugation TrbI-like protein RD03_RS19235 PF00437 Type II/IV secretion system protein RD03_RS19245 PF00892 EamA-like transporter family RD03_RS19265 PF12631 MnmE helical domain RD03_RS19265 PF10396 GTP-binding protein TrmE N-terminus RD03_RS19265 PF01926 50S ribosome-binding GTPase RD03_RS19270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS19275 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS19280 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS19280 PF12911 N-terminal TM domain of oligopeptide transport permease C RD03_RS19285 PF00005 ABC transporter RD03_RS19285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS19295 PF01960 ArgJ family RD03_RS19305 PF00293 NUDIX domain RD03_RS19325 PF02321 Outer membrane efflux protein RD03_RS19330 PF00873 AcrB/AcrD/AcrF family RD03_RS19335 PF00873 AcrB/AcrD/AcrF family RD03_RS19340 PF13533 Biotin-lipoyl like RD03_RS19345 PF07072 Cell division protein RD03_RS19350 PF01121 Dephospho-CoA kinase RD03_RS19355 PF06750 Bacterial Peptidase A24 N-terminal domain RD03_RS19355 PF01478 Type IV leader peptidase family RD03_RS19370 PF02569 Pantoate-beta-alanine ligase RD03_RS19375 PF02616 Segregation and condensation protein ScpA RD03_RS19385 PF07690 Major Facilitator Superfamily RD03_RS19390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RD03_RS19390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RD03_RS19400 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS19405 PF00005 ABC transporter RD03_RS19410 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS19415 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS19420 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD03_RS19425 PF00005 ABC transporter RD03_RS19430 PF18075 FtsX extracellular domain RD03_RS19435 PF03975 CheD chemotactic sensory transduction RD03_RS19445 PF00730 HhH-GPD superfamily base excision DNA repair protein RD03_RS19445 PF00633 Helix-hairpin-helix motif RD03_RS19445 PF10576 Iron-sulfur binding domain of endonuclease III RD03_RS19445 PF14815 NUDIX domain RD03_RS19455 PF08241 Methyltransferase domain RD03_RS19465 PF02515 CoA-transferase family III RD03_RS19470 PF02515 CoA-transferase family III RD03_RS19480 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS19485 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS19490 PF00881 Nitroreductase family RD03_RS19500 PF00682 HMGL-like RD03_RS19505 PF00378 Enoyl-CoA hydratase/isomerase RD03_RS19510 PF02515 CoA-transferase family III RD03_RS19515 PF03401 Tripartite tricarboxylate transporter family receptor RD03_RS19525 PF06628 Catalase-related immune-responsive RD03_RS19525 PF00199 Catalase RD03_RS19530 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS19535 PF00005 ABC transporter RD03_RS19545 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD03_RS19550 PF07687 Peptidase dimerisation domain RD03_RS19550 PF01546 Peptidase family M20/M25/M40 RD03_RS19555 PF00005 ABC transporter RD03_RS19555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS19560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD03_RS19560 PF00005 ABC transporter RD03_RS19565 PF12911 N-terminal TM domain of oligopeptide transport permease C RD03_RS19565 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS19570 PF00528 Binding-protein-dependent transport system inner membrane component RD03_RS19575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD03_RS19580 PF12631 MnmE helical domain RD03_RS19580 PF10396 GTP-binding protein TrmE N-terminus RD03_RS19580 PF01926 50S ribosome-binding GTPase RD03_RS19590 PF00072 Response regulator receiver domain RD03_RS19590 PF00486 Transcriptional regulatory protein, C terminal RD03_RS19595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD03_RS19595 PF00512 His Kinase A (phospho-acceptor) domain RD03_RS19610 PF01970 Tripartite tricarboxylate transporter TctA family RD03_RS19615 PF00155 Aminotransferase class I and II RD03_RS19620 PF00313 'Cold-shock' DNA-binding domain