locus-tag class description RD04_RS00005 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS00005 IPR020595 MnmG-related, conserved site RD04_RS00005 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related RD04_RS00005 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG RD04_RS00005 IPR026904 GidA associated domain 3 RD04_RS00010 IPR003682 rRNA small subunit methyltransferase G RD04_RS00010 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00015 IPR025669 AAA domain RD04_RS00025 IPR041468 ParB/Spo0J, HTH domain RD04_RS00025 IPR004437 ParB/RepB/Spo0J partition protein RD04_RS00025 IPR003115 ParB/Sulfiredoxin RD04_RS00025 IPR036086 ParB/Sulfiredoxin superfamily RD04_RS00030 IPR004550 L-asparaginase, type II RD04_RS00030 IPR037152 L-asparaginase, N-terminal domain superfamily RD04_RS00030 IPR027474 L-asparaginase, N-terminal RD04_RS00030 IPR027473 L-asparaginase, C-terminal RD04_RS00030 IPR040919 Asparaginase/glutaminase, C-terminal RD04_RS00030 IPR027475 Asparaginase/glutaminase, active site 2 RD04_RS00030 IPR020827 Asparaginase/glutaminase, active site 1 RD04_RS00030 IPR006034 Asparaginase/glutaminase-like RD04_RS00030 IPR036152 Asparaginase/glutaminase-like superfamily RD04_RS00035 IPR006034 Asparaginase/glutaminase-like RD04_RS00035 IPR020827 Asparaginase/glutaminase, active site 1 RD04_RS00035 IPR004550 L-asparaginase, type II RD04_RS00035 IPR036152 Asparaginase/glutaminase-like superfamily RD04_RS00035 IPR027475 Asparaginase/glutaminase, active site 2 RD04_RS00035 IPR027473 L-asparaginase, C-terminal RD04_RS00035 IPR027474 L-asparaginase, N-terminal RD04_RS00035 IPR037152 L-asparaginase, N-terminal domain superfamily RD04_RS00035 IPR040919 Asparaginase/glutaminase, C-terminal RD04_RS00055 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RD04_RS00055 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle RD04_RS00055 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RD04_RS00055 IPR000795 Transcription factor, GTP-binding domain RD04_RS00055 IPR005225 Small GTP-binding protein domain RD04_RS00055 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS00055 IPR031157 Tr-type G domain, conserved site RD04_RS00055 IPR033720 Elongation factor Tu, domain 2 RD04_RS00055 IPR004161 Translation elongation factor EFTu-like, domain 2 RD04_RS00055 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain RD04_RS00055 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00065 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit RD04_RS00065 IPR038379 SecE superfamily RD04_RS00065 IPR005807 SecE subunit of protein translocation complex, bacterial-like RD04_RS00070 IPR005824 KOW RD04_RS00070 IPR006645 NusG, N-terminal RD04_RS00070 IPR008991 Translation protein SH3-like domain superfamily RD04_RS00070 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RD04_RS00070 IPR001062 Transcription antitermination protein, NusG RD04_RS00070 IPR014722 Ribosomal protein L2, domain 2 RD04_RS00070 IPR036735 NusG, N-terminal domain superfamily RD04_RS00075 IPR020784 Ribosomal protein L11, N-terminal RD04_RS00075 IPR020785 Ribosomal protein L11, conserved site RD04_RS00075 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RD04_RS00075 IPR020783 Ribosomal protein L11, C-terminal RD04_RS00075 IPR000911 Ribosomal protein L11/L12 RD04_RS00075 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RD04_RS00075 IPR006519 Ribosomal protein L11, bacterial-type RD04_RS00080 IPR023673 Ribosomal protein L1, conserved site RD04_RS00080 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RD04_RS00080 IPR023674 Ribosomal protein L1-like RD04_RS00080 IPR002143 Ribosomal protein L1 RD04_RS00080 IPR005878 Ribosomal protein L1, bacterial-type RD04_RS00080 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RD04_RS00085 IPR022973 Ribosomal protein L10 RD04_RS00085 IPR002363 Ribosomal protein L10, eubacterial, conserved site RD04_RS00085 IPR001790 Ribosomal protein L10P RD04_RS00090 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily RD04_RS00090 IPR008932 Ribosomal protein L7/L12, oligomerisation RD04_RS00090 IPR013823 Ribosomal protein L7/L12, C-terminal RD04_RS00090 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RD04_RS00090 IPR000206 Ribosomal protein L7/L12 RD04_RS00095 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain RD04_RS00095 IPR015712 DNA-directed RNA polymerase, subunit 2 RD04_RS00095 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain RD04_RS00095 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily RD04_RS00095 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type RD04_RS00095 IPR037034 RNA polymerase Rpb2, domain 2 superfamily RD04_RS00095 IPR007642 RNA polymerase Rpb2, domain 2 RD04_RS00095 IPR007644 RNA polymerase, beta subunit, protrusion RD04_RS00095 IPR014724 RNA polymerase Rpb2, OB-fold RD04_RS00095 IPR007645 RNA polymerase Rpb2, domain 3 RD04_RS00095 IPR007121 RNA polymerase, beta subunit, conserved site RD04_RS00095 IPR007641 RNA polymerase Rpb2, domain 7 RD04_RS00100 IPR006592 RNA polymerase, N-terminal RD04_RS00100 IPR000722 RNA polymerase, alpha subunit RD04_RS00100 IPR038120 RNA polymerase Rpb1, funnel domain superfamily RD04_RS00100 IPR007081 RNA polymerase Rpb1, domain 5 RD04_RS00100 IPR007083 RNA polymerase Rpb1, domain 4 RD04_RS00100 IPR042102 RNA polymerase Rpb1, domain 3 superfamily RD04_RS00100 IPR012754 DNA-directed RNA polymerase, subunit beta-prime RD04_RS00100 IPR007080 RNA polymerase Rpb1, domain 1 RD04_RS00100 IPR007066 RNA polymerase Rpb1, domain 3 RD04_RS00130 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS00130 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS00130 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS00130 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS00130 IPR011006 CheY-like superfamily RD04_RS00130 IPR001789 Signal transduction response regulator, receiver domain RD04_RS00140 IPR023606 CoA-transferase family III domain superfamily RD04_RS00140 IPR003673 CoA-transferase family III RD04_RS00155 IPR029069 HotDog domain superfamily RD04_RS00155 IPR002539 MaoC-like dehydratase domain RD04_RS00155 IPR039375 Nodulation protein N-like RD04_RS00160 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS00160 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS00160 IPR005119 LysR, substrate-binding RD04_RS00160 IPR000847 Transcription regulator HTH, LysR RD04_RS00165 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS00165 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS00165 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS00165 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS00190 IPR002310 Glycine-tRNA ligase, alpha subunit RD04_RS00190 IPR006194 Glycine-tRNA synthetase, heterodimeric RD04_RS00195 IPR008909 DALR anticodon binding RD04_RS00195 IPR015944 Glycine-tRNA ligase, beta subunit RD04_RS00195 IPR006194 Glycine-tRNA synthetase, heterodimeric RD04_RS00200 IPR006549 HAD-superfamily hydrolase,subfamily IIIA RD04_RS00200 IPR023214 HAD superfamily RD04_RS00200 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase RD04_RS00200 IPR006543 Histidinol-phosphate phosphatase RD04_RS00200 IPR036412 HAD-like superfamily RD04_RS00205 IPR002123 Phospholipid/glycerol acyltransferase RD04_RS00205 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase RD04_RS00215 IPR037523 Vicinal oxygen chelate (VOC) domain RD04_RS00215 IPR018146 Glyoxalase I, conserved site RD04_RS00215 IPR004361 Glyoxalase I RD04_RS00215 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD04_RS00215 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RD04_RS00220 IPR036821 Peptide deformylase superfamily RD04_RS00220 IPR023635 Peptide deformylase RD04_RS00235 IPR000639 Epoxide hydrolase-like RD04_RS00235 IPR029058 Alpha/Beta hydrolase fold RD04_RS00235 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS00255 IPR003767 Malate/L-lactate dehydrogenase-like RD04_RS00255 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily RD04_RS00260 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS00260 IPR008220 Homoserine/serine acetyltransferase MetX-like RD04_RS00260 IPR029058 Alpha/Beta hydrolase fold RD04_RS00265 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS00265 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS00265 IPR029058 Alpha/Beta hydrolase fold RD04_RS00265 IPR010743 Methionine biosynthesis MetW RD04_RS00265 IPR008220 Homoserine/serine acetyltransferase MetX-like RD04_RS00275 IPR036259 MFS transporter superfamily RD04_RS00275 IPR020846 Major facilitator superfamily domain RD04_RS00275 IPR011701 Major facilitator superfamily RD04_RS00275 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 RD04_RS00285 IPR001920 Asp/Glu racemase RD04_RS00285 IPR004380 Aspartate racemase RD04_RS00285 IPR033134 Asp/Glu racemase, active site 2 RD04_RS00285 IPR015942 Asp/Glu/hydantoin racemase RD04_RS00285 IPR018187 Asp/Glu racemase, active site 1 RD04_RS00290 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type RD04_RS00290 IPR003439 ABC transporter-like RD04_RS00290 IPR017871 ABC transporter, conserved site RD04_RS00290 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00290 IPR003593 AAA+ ATPase domain RD04_RS00295 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS00295 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM RD04_RS00295 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS00295 IPR035906 MetI-like superfamily RD04_RS00300 IPR035906 MetI-like superfamily RD04_RS00300 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS00300 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ RD04_RS00300 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS00305 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS00335 IPR042100 Bordetella uptake gene, domain 1 RD04_RS00335 IPR005064 Bordetella uptake gene RD04_RS00350 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS00350 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS00350 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS00350 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS00350 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS00350 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS00350 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain RD04_RS00350 IPR012675 Beta-grasp domain superfamily RD04_RS00350 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RD04_RS00355 IPR004681 TRAP transporter large membrane protein DctM RD04_RS00355 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD04_RS00365 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS00365 IPR004682 TRAP transporter solute receptor, DctP family RD04_RS00365 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS00395 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS00395 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS00395 IPR001404 Heat shock protein Hsp90 family RD04_RS00395 IPR037196 HSP90, C-terminal domain RD04_RS00395 IPR020575 Heat shock protein Hsp90, N-terminal RD04_RS00395 IPR019805 Heat shock protein Hsp90, conserved site RD04_RS00395 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS00400 IPR036249 Thioredoxin-like superfamily RD04_RS00400 IPR004046 Glutathione S-transferase, C-terminal RD04_RS00400 IPR004045 Glutathione S-transferase, N-terminal RD04_RS00400 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RD04_RS00400 IPR010987 Glutathione S-transferase, C-terminal-like RD04_RS00405 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily RD04_RS00405 IPR002502 N-acetylmuramoyl-L-alanine amidase domain RD04_RS00415 IPR017562 Cytochrome c-type biogenesis protein CcsA RD04_RS00415 IPR002541 Cytochrome c assembly protein RD04_RS00420 IPR003593 AAA+ ATPase domain RD04_RS00420 IPR013822 Signal recognition particle SRP54, helical bundle RD04_RS00420 IPR004125 Signal recognition particle, SRP54 subunit, M-domain RD04_RS00420 IPR022941 Signal recognition particle, SRP54 subunit RD04_RS00420 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain RD04_RS00420 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily RD04_RS00420 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00420 IPR004780 Signal recognition particle protein RD04_RS00420 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily RD04_RS00435 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS00435 IPR036291 NAD(P)-binding domain superfamily RD04_RS00435 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RD04_RS00445 IPR021260 Lipid II flippase Amj RD04_RS00450 IPR000368 Sucrose synthase RD04_RS00450 IPR001296 Glycosyl transferase, family 1 RD04_RS00455 IPR003362 Bacterial sugar transferase RD04_RS00455 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase RD04_RS00455 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ RD04_RS00460 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS00460 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS00460 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS00460 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RD04_RS00470 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like RD04_RS00470 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain RD04_RS00475 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS00475 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RD04_RS00475 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS00475 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS00480 IPR011004 Trimeric LpxA-like superfamily RD04_RS00480 IPR001451 Hexapeptide repeat RD04_RS00485 IPR036291 NAD(P)-binding domain superfamily RD04_RS00485 IPR004104 Oxidoreductase, C-terminal RD04_RS00485 IPR000683 Oxidoreductase, N-terminal RD04_RS00490 IPR002201 Glycosyl transferase, family 9 RD04_RS00490 IPR011908 Lipopolysaccharide heptosyltransferase I RD04_RS00495 IPR001296 Glycosyl transferase, family 1 RD04_RS00495 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal RD04_RS00495 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily RD04_RS00495 IPR039901 3-deoxy-D-manno-octulosonic acid transferase RD04_RS00505 IPR004619 Type III pantothenate kinase RD04_RS00515 IPR030802 ABC transporter permease MalE RD04_RS00515 IPR003453 ABC transport permease subunit MlaE, Proteobacteria RD04_RS00520 IPR003593 AAA+ ATPase domain RD04_RS00520 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00520 IPR003439 ABC transporter-like RD04_RS00520 IPR017871 ABC transporter, conserved site RD04_RS00520 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl RD04_RS00545 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A RD04_RS00545 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal RD04_RS00545 IPR012338 Beta-lactamase/transpeptidase-like RD04_RS00545 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal RD04_RS00545 IPR015956 Penicillin-binding protein, C-terminal domain superfamily RD04_RS00545 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily RD04_RS00550 IPR005784 D-amino acid aminotransferase RD04_RS00550 IPR036038 Aminotransferase-like, PLP-dependent enzymes RD04_RS00550 IPR018300 Aminotransferase, class IV, conserved site RD04_RS00550 IPR001544 Aminotransferase class IV RD04_RS00555 IPR007454 Uncharacterised protein family UPF0250 RD04_RS00555 IPR027471 YbeD-like domain superfamily RD04_RS00560 IPR020605 Octanoyltransferase, conserved site RD04_RS00560 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain RD04_RS00560 IPR000544 Octanoyltransferase RD04_RS00565 IPR013785 Aldolase-type TIM barrel RD04_RS00565 IPR007197 Radical SAM RD04_RS00565 IPR003698 Lipoyl synthase RD04_RS00565 IPR031691 Lipoyl synthase, N-terminal RD04_RS00565 IPR006638 Elp3/MiaB/NifB RD04_RS00570 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related RD04_RS00570 IPR011051 RmlC-like cupin domain superfamily RD04_RS00570 IPR014710 RmlC-like jelly roll fold RD04_RS00575 IPR029903 RmlD-like substrate binding domain RD04_RS00575 IPR036291 NAD(P)-binding domain superfamily RD04_RS00575 IPR005913 dTDP-4-dehydrorhamnose reductase family RD04_RS00580 IPR036291 NAD(P)-binding domain superfamily RD04_RS00580 IPR005888 dTDP-glucose 4,6-dehydratase RD04_RS00580 IPR016040 NAD(P)-binding domain RD04_RS00590 IPR001123 Amino acid exporter protein, LeuE-type RD04_RS00595 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS00595 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS00595 IPR006233 Cystathionine beta-lyase, bacterial RD04_RS00595 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS00595 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme RD04_RS00600 IPR036249 Thioredoxin-like superfamily RD04_RS00600 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL RD04_RS00600 IPR001853 DSBA-like thioredoxin domain RD04_RS00600 IPR017937 Thioredoxin, conserved site RD04_RS00600 IPR013766 Thioredoxin domain RD04_RS00610 IPR008909 DALR anticodon binding RD04_RS00610 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RD04_RS00610 IPR001278 Arginine-tRNA ligase RD04_RS00610 IPR005148 Arginyl tRNA synthetase N-terminal domain RD04_RS00610 IPR035684 Arginyl-tRNA synthetase, catalytic core domain RD04_RS00610 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS00610 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily RD04_RS00610 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RD04_RS00630 IPR035906 MetI-like superfamily RD04_RS00630 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS00635 IPR035906 MetI-like superfamily RD04_RS00635 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS00640 IPR006061 Solute-binding family 1, conserved site RD04_RS00640 IPR006059 Bacterial extracellular solute-binding protein RD04_RS00645 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS00645 IPR003593 AAA+ ATPase domain RD04_RS00645 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC RD04_RS00645 IPR040582 MalK, OB fold domain RD04_RS00645 IPR017871 ABC transporter, conserved site RD04_RS00645 IPR003439 ABC transporter-like RD04_RS00645 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00650 IPR042283 GpdQ, catalytic alpha/beta sandwich domain RD04_RS00650 IPR042281 GpdQ, beta-strand dimerisation domain RD04_RS00650 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA RD04_RS00650 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type RD04_RS00660 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00660 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS00660 IPR017871 ABC transporter, conserved site RD04_RS00660 IPR005666 Sulphate transport system permease protein 1 RD04_RS00660 IPR024765 TOBE-like domain RD04_RS00660 IPR003439 ABC transporter-like RD04_RS00660 IPR003593 AAA+ ATPase domain RD04_RS00660 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal RD04_RS00665 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS00665 IPR035906 MetI-like superfamily RD04_RS00665 IPR011867 Molybdate ABC transporter, permease protein RD04_RS00680 IPR028082 Periplasmic binding protein-like I RD04_RS00680 IPR023588 Transcription regulator HTH, PurR RD04_RS00680 IPR000843 LacI-type HTH domain RD04_RS00680 IPR010982 Lambda repressor-like, DNA-binding domain superfamily RD04_RS00690 IPR036928 Amidase signature (AS) superfamily RD04_RS00690 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit RD04_RS00690 IPR000120 Amidase RD04_RS00690 IPR023631 Amidase signature domain RD04_RS00690 IPR020556 Amidase, conserved site RD04_RS00695 IPR039371 LeuA, N-terminal catalytic TIM barrel domain RD04_RS00695 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily RD04_RS00695 IPR005668 2-isopropylmalate synthase RD04_RS00695 IPR013785 Aldolase-type TIM barrel RD04_RS00695 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site RD04_RS00695 IPR000891 Pyruvate carboxyltransferase RD04_RS00695 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain RD04_RS00705 IPR007634 RNA polymerase sigma factor 54, DNA-binding RD04_RS00705 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily RD04_RS00705 IPR000394 RNA polymerase sigma factor 54 RD04_RS00705 IPR007046 RNA polymerase sigma factor 54, core-binding domain RD04_RS00715 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS00715 IPR000847 Transcription regulator HTH, LysR RD04_RS00715 IPR005119 LysR, substrate-binding RD04_RS00715 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS00730 IPR002299 Porin, Neisseria sp. type RD04_RS00730 IPR001702 Porin, Gram-negative type RD04_RS00730 IPR023614 Porin domain superfamily RD04_RS00730 IPR033900 Porin domain, Gram-negative type RD04_RS00735 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD04_RS00735 IPR038110 Threonine dehydratase, ACT-like domain superfamily RD04_RS00735 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site RD04_RS00735 IPR001721 Threonine dehydratase, ACT-like domain RD04_RS00735 IPR005787 Threonine dehydratase, biosynthetic RD04_RS00735 IPR001926 Pyridoxal-phosphate dependent enzyme RD04_RS00750 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS00750 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS00750 IPR000524 Transcription regulator HTH, GntR RD04_RS00750 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS00750 IPR011711 GntR, C-terminal RD04_RS00750 IPR000485 AsnC-type HTH domain RD04_RS00755 IPR023606 CoA-transferase family III domain superfamily RD04_RS00755 IPR003673 CoA-transferase family III RD04_RS00765 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS00765 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS00770 IPR002938 FAD-binding domain RD04_RS00770 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS00770 IPR017631 Salicylate 1-monooxygenase RD04_RS00775 IPR002938 FAD-binding domain RD04_RS00775 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS00780 IPR042100 Bordetella uptake gene, domain 1 RD04_RS00780 IPR005064 Bordetella uptake gene RD04_RS00790 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel RD04_RS00790 IPR005501 LamB/YcsF/PxpA-like RD04_RS00795 IPR003778 Carboxyltransferase domain, subdomain A and B RD04_RS00795 IPR029000 Cyclophilin-like domain superfamily RD04_RS00800 IPR003833 Carboxyltransferase domain, subdomain C and D RD04_RS00800 IPR029000 Cyclophilin-like domain superfamily RD04_RS00800 IPR010016 KipI family RD04_RS00810 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS00810 IPR005119 LysR, substrate-binding RD04_RS00810 IPR000847 Transcription regulator HTH, LysR RD04_RS00810 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS00815 IPR036291 NAD(P)-binding domain superfamily RD04_RS00815 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RD04_RS00815 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RD04_RS00815 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RD04_RS00815 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD04_RS00815 IPR002912 ACT domain RD04_RS00825 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS00825 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS00825 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS00825 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS00825 IPR003660 HAMP domain RD04_RS00825 IPR005467 Histidine kinase domain RD04_RS00825 IPR006290 Heavy metal sensor kinase RD04_RS00825 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS00830 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS00830 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS00830 IPR001789 Signal transduction response regulator, receiver domain RD04_RS00830 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response RD04_RS00830 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS00830 IPR011006 CheY-like superfamily RD04_RS00835 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS00835 IPR005467 Histidine kinase domain RD04_RS00835 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR RD04_RS00835 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS00835 IPR013767 PAS fold RD04_RS00835 IPR035965 PAS domain superfamily RD04_RS00835 IPR021766 Phosphate regulon sensor protein PhoR RD04_RS00835 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS00835 IPR000014 PAS domain RD04_RS00835 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS00835 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS00840 IPR001789 Signal transduction response regulator, receiver domain RD04_RS00840 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS00840 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS00840 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS00840 IPR011006 CheY-like superfamily RD04_RS00840 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB RD04_RS00845 IPR023576 UbiE/COQ5 methyltransferase, conserved site RD04_RS00845 IPR004033 UbiE/COQ5 methyltransferase RD04_RS00845 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS00860 IPR004147 UbiB domain RD04_RS00860 IPR010232 Probable protein kinase UbiB RD04_RS00860 IPR011009 Protein kinase-like domain superfamily RD04_RS00860 IPR000719 Protein kinase domain RD04_RS00875 IPR003593 AAA+ ATPase domain RD04_RS00875 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00875 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS00875 IPR017871 ABC transporter, conserved site RD04_RS00875 IPR003439 ABC transporter-like RD04_RS00880 IPR007621 TPM domain RD04_RS00890 IPR011545 DEAD/DEAH box helicase domain RD04_RS00890 IPR028622 ATP-dependent RNA helicase RhlE RD04_RS00890 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS00890 IPR001650 Helicase, C-terminal RD04_RS00890 IPR014014 RNA helicase, DEAD-box type, Q motif RD04_RS00890 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00890 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RD04_RS00895 IPR001123 Amino acid exporter protein, LeuE-type RD04_RS00900 IPR031157 Tr-type G domain, conserved site RD04_RS00900 IPR004161 Translation elongation factor EFTu-like, domain 2 RD04_RS00900 IPR035647 EF-G domain III/V-like RD04_RS00900 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS00900 IPR032090 Peptide chain release factor 3, C-terminal RD04_RS00900 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00900 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily RD04_RS00900 IPR004548 Peptide chain release factor 3 RD04_RS00900 IPR005225 Small GTP-binding protein domain RD04_RS00900 IPR000795 Transcription factor, GTP-binding domain RD04_RS00900 IPR041732 Peptide chain release factor 3, GTP-binding domain RD04_RS00910 IPR008331 Ferritin/DPS protein domain RD04_RS00910 IPR009040 Ferritin-like diiron domain RD04_RS00910 IPR012347 Ferritin-like RD04_RS00910 IPR002024 Bacterioferritin RD04_RS00910 IPR009078 Ferritin-like superfamily RD04_RS00935 IPR040503 UPF0176, acylphosphatase-like domain RD04_RS00935 IPR020936 Uncharacterised protein family UPF0176 RD04_RS00935 IPR036873 Rhodanese-like domain superfamily RD04_RS00935 IPR001763 Rhodanese-like domain RD04_RS00940 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain RD04_RS00940 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal RD04_RS00940 IPR023458 Methionine-tRNA ligase, type 1 RD04_RS00940 IPR014758 Methionyl-tRNA synthetase RD04_RS00940 IPR015413 Methionyl/Leucyl tRNA synthetase RD04_RS00940 IPR033911 Methioninyl-tRNA synthetase core domain RD04_RS00940 IPR029038 Methionyl-tRNA synthetase, Zn-domain RD04_RS00940 IPR012340 Nucleic acid-binding, OB-fold RD04_RS00940 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS00940 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RD04_RS00940 IPR002547 tRNA-binding domain RD04_RS00940 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RD04_RS00950 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS00950 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 RD04_RS00950 IPR000808 Mrp, conserved site RD04_RS00950 IPR019591 Mrp/NBP35 ATP-binding protein RD04_RS00965 IPR033704 dUTPase, trimeric RD04_RS00965 IPR036157 dUTPase-like superfamily RD04_RS00965 IPR029054 dUTPase-like RD04_RS00965 IPR011962 dCTP deaminase RD04_RS00990 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal RD04_RS00990 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS00990 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS00990 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS00990 IPR011193 Ornithine/lysine/arginine decarboxylase RD04_RS00990 IPR000310 Orn/Lys/Arg decarboxylase, major domain RD04_RS00990 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal RD04_RS00990 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily RD04_RS00995 IPR023166 HI0933-like insert domain superfamily RD04_RS00995 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like RD04_RS00995 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS01005 IPR002187 Nitrogen regulatory protein PII RD04_RS01005 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RD04_RS01005 IPR017918 Nitrogen regulatory protein PII, conserved site RD04_RS01005 IPR002332 Nitrogen regulatory protein P-II, urydylation site RD04_RS01005 IPR011322 Nitrogen regulatory PII-like, alpha/beta RD04_RS01010 IPR000132 Nitrilase/cyanide hydratase, conserved site RD04_RS01010 IPR036526 Carbon-nitrogen hydrolase superfamily RD04_RS01010 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS01010 IPR003694 NAD(+) synthetase RD04_RS01010 IPR014445 Glutamine-dependent NAD(+) synthetase RD04_RS01010 IPR022310 NAD/GMP synthase RD04_RS01010 IPR003010 Carbon-nitrogen hydrolase RD04_RS01015 IPR030192 Miniconductance mechanosensitive channel YbdG RD04_RS01015 IPR011066 Mechanosensitive ion channel MscS, C-terminal RD04_RS01015 IPR006685 Mechanosensitive ion channel MscS RD04_RS01015 IPR010920 LSM domain superfamily RD04_RS01020 IPR009049 Argininosuccinate lyase RD04_RS01020 IPR029419 Argininosuccinate lyase, C-terminal RD04_RS01020 IPR024083 Fumarase/histidase, N-terminal RD04_RS01020 IPR020557 Fumarate lyase, conserved site RD04_RS01020 IPR000362 Fumarate lyase family RD04_RS01020 IPR022761 Fumarate lyase, N-terminal RD04_RS01020 IPR008948 L-Aspartase-like RD04_RS01035 IPR001126 UmuC domain RD04_RS01035 IPR024728 DNA polymerase type-Y, HhH motif RD04_RS01035 IPR022880 DNA polymerase IV RD04_RS01035 IPR017961 DNA polymerase, Y-family, little finger domain RD04_RS01035 IPR036775 DNA polymerase, Y-family, little finger domain superfamily RD04_RS01045 IPR029058 Alpha/Beta hydrolase fold RD04_RS01045 IPR011042 Six-bladed beta-propeller, TolB-like RD04_RS01045 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain RD04_RS01050 IPR036950 Penicillin binding protein transglycosylase domain RD04_RS01050 IPR023346 Lysozyme-like domain superfamily RD04_RS01050 IPR001264 Glycosyl transferase, family 51 RD04_RS01050 IPR001460 Penicillin-binding protein, transpeptidase RD04_RS01050 IPR031376 Penicillin-binding protein, OB-like domain RD04_RS01050 IPR012338 Beta-lactamase/transpeptidase-like RD04_RS01055 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase RD04_RS01055 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type RD04_RS01055 IPR029052 Metallo-dependent phosphatase-like RD04_RS01070 IPR023210 NADP-dependent oxidoreductase domain RD04_RS01070 IPR020471 Aldo/keto reductase RD04_RS01070 IPR036812 NADP-dependent oxidoreductase domain superfamily RD04_RS01075 IPR020471 Aldo/keto reductase RD04_RS01075 IPR023210 NADP-dependent oxidoreductase domain RD04_RS01075 IPR018170 Aldo/keto reductase, conserved site RD04_RS01075 IPR036812 NADP-dependent oxidoreductase domain superfamily RD04_RS01080 IPR039421 Type I protein exporter RD04_RS01080 IPR017871 ABC transporter, conserved site RD04_RS01080 IPR003593 AAA+ ATPase domain RD04_RS01080 IPR011527 ABC transporter type 1, transmembrane domain RD04_RS01080 IPR036640 ABC transporter type 1, transmembrane domain superfamily RD04_RS01080 IPR003439 ABC transporter-like RD04_RS01080 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS01125 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal RD04_RS01125 IPR034733 Acetyl-CoA carboxylase RD04_RS01125 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS01125 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal RD04_RS01130 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase RD04_RS01130 IPR011054 Rudiment single hybrid motif RD04_RS01130 IPR011761 ATP-grasp fold RD04_RS01130 IPR011764 Biotin carboxylation domain RD04_RS01130 IPR005481 Biotin carboxylase-like, N-terminal domain RD04_RS01130 IPR016185 Pre-ATP-grasp domain superfamily RD04_RS01130 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain RD04_RS01130 IPR005482 Biotin carboxylase, C-terminal RD04_RS01135 IPR000524 Transcription regulator HTH, GntR RD04_RS01135 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS01135 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RD04_RS01135 IPR011663 UbiC transcription regulator-associated RD04_RS01135 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS01155 IPR013785 Aldolase-type TIM barrel RD04_RS01155 IPR001882 Biotin-binding site RD04_RS01155 IPR003379 Carboxylase, conserved domain RD04_RS01155 IPR005776 Oxaloacetate decarboxylase, alpha subunit RD04_RS01155 IPR000891 Pyruvate carboxyltransferase RD04_RS01155 IPR011053 Single hybrid motif RD04_RS01155 IPR000089 Biotin/lipoyl attachment RD04_RS01160 IPR011053 Single hybrid motif RD04_RS01160 IPR000089 Biotin/lipoyl attachment RD04_RS01160 IPR001882 Biotin-binding site RD04_RS01160 IPR001249 Acetyl-CoA biotin carboxyl carrier RD04_RS01190 IPR023787 Type III secretion system flagellar brake protein YcgR RD04_RS01190 IPR012349 FMN-binding split barrel RD04_RS01190 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal RD04_RS01190 IPR009875 PilZ domain RD04_RS01205 IPR008854 TPMT family RD04_RS01205 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS01205 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification RD04_RS01205 IPR025835 Thiopurine S-methyltransferase RD04_RS01210 IPR011527 ABC transporter type 1, transmembrane domain RD04_RS01210 IPR003593 AAA+ ATPase domain RD04_RS01210 IPR036640 ABC transporter type 1, transmembrane domain superfamily RD04_RS01210 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS01210 IPR017871 ABC transporter, conserved site RD04_RS01210 IPR039421 Type I protein exporter RD04_RS01210 IPR003439 ABC transporter-like RD04_RS01225 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RD04_RS01225 IPR012846 Acetolactate synthase, large subunit, biosynthetic RD04_RS01225 IPR000399 TPP-binding enzyme, conserved site RD04_RS01225 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RD04_RS01225 IPR012000 Thiamine pyrophosphate enzyme, central domain RD04_RS01225 IPR039368 Acetolactate synthase large subunit, TPP binding domain RD04_RS01225 IPR029061 Thiamin diphosphate-binding fold RD04_RS01225 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS01230 IPR039557 AHAS, ACT domain RD04_RS01230 IPR002912 ACT domain RD04_RS01230 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal RD04_RS01230 IPR004789 Acetolactate synthase, small subunit RD04_RS01230 IPR019455 Acetolactate synthase, small subunit, C-terminal RD04_RS01235 IPR014359 Ketol-acid reductoisomerase, prokaryotic RD04_RS01235 IPR036291 NAD(P)-binding domain superfamily RD04_RS01235 IPR000506 Ketol-acid reductoisomerase, C-terminal RD04_RS01235 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS01235 IPR013023 Ketol-acid reductoisomerase RD04_RS01235 IPR013116 Ketol-acid reductoisomerase, N-terminal RD04_RS01240 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase RD04_RS01240 IPR000462 CDP-alcohol phosphatidyltransferase RD04_RS01250 IPR009068 S15/NS1, RNA-binding RD04_RS01250 IPR005290 Ribosomal protein S15, bacterial-type RD04_RS01250 IPR000589 Ribosomal protein S15 RD04_RS01255 IPR012162 Polyribonucleotide nucleotidyltransferase RD04_RS01255 IPR003029 S1 domain RD04_RS01255 IPR001247 Exoribonuclease, phosphorolytic domain 1 RD04_RS01255 IPR015847 Exoribonuclease, phosphorolytic domain 2 RD04_RS01255 IPR036345 Exoribonuclease, PH domain 2 superfamily RD04_RS01255 IPR004088 K Homology domain, type 1 RD04_RS01255 IPR036612 K Homology domain, type 1 superfamily RD04_RS01255 IPR004087 K Homology domain RD04_RS01255 IPR027408 PNPase/RNase PH domain superfamily RD04_RS01255 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain RD04_RS01255 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily RD04_RS01255 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS01255 IPR012340 Nucleic acid-binding, OB-fold RD04_RS01255 IPR022967 RNA-binding domain, S1 RD04_RS01270 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD04_RS01270 IPR005789 Threonine dehydratase, catabolic RD04_RS01270 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site RD04_RS01270 IPR001926 Pyridoxal-phosphate dependent enzyme RD04_RS01270 IPR002912 ACT domain RD04_RS01285 IPR001227 Acyl transferase domain superfamily RD04_RS01285 IPR014043 Acyl transferase RD04_RS01285 IPR013968 Polyketide synthase, ketoreductase domain RD04_RS01285 IPR016039 Thiolase-like RD04_RS01285 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site RD04_RS01285 IPR020807 Polyketide synthase, dehydratase domain RD04_RS01285 IPR011032 GroES-like superfamily RD04_RS01285 IPR042104 Polyketide synthase, dehydratase domain superfamily RD04_RS01285 IPR032821 Ketoacyl-synthetase, C-terminal extension RD04_RS01285 IPR006162 Phosphopantetheine attachment site RD04_RS01285 IPR020843 Polyketide synthase, enoylreductase domain RD04_RS01285 IPR036291 NAD(P)-binding domain superfamily RD04_RS01285 IPR013154 Alcohol dehydrogenase, N-terminal RD04_RS01285 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RD04_RS01285 IPR014030 Beta-ketoacyl synthase, N-terminal RD04_RS01285 IPR014031 Beta-ketoacyl synthase, C-terminal RD04_RS01285 IPR018201 Beta-ketoacyl synthase, active site RD04_RS01285 IPR020806 Polyketide synthase, phosphopantetheine-binding domain RD04_RS01285 IPR015083 Polyketide synthase, docking domain RD04_RS01285 IPR036736 ACP-like superfamily RD04_RS01285 IPR009081 Phosphopantetheine binding ACP domain RD04_RS01285 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RD04_RS01285 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RD04_RS01290 IPR000652 Triosephosphate isomerase RD04_RS01290 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic RD04_RS01290 IPR020861 Triosephosphate isomerase, active site RD04_RS01290 IPR013785 Aldolase-type TIM barrel RD04_RS01290 IPR035990 Triosephosphate isomerase superfamily RD04_RS01295 IPR004692 Preprotein translocase SecG subunit RD04_RS01305 IPR018093 BCCT transporter, conserved site RD04_RS01305 IPR000060 BCCT transporter family RD04_RS01315 IPR022662 Methylaspartate ammonia-lyase, C-terminal RD04_RS01315 IPR029017 Enolase-like, N-terminal RD04_RS01315 IPR036849 Enolase-like, C-terminal domain superfamily RD04_RS01315 IPR022665 Methylaspartate ammonia-lyase, N-terminal RD04_RS01315 IPR006395 Methylaspartate ammonia-lyase RD04_RS01320 IPR042100 Bordetella uptake gene, domain 1 RD04_RS01320 IPR005064 Bordetella uptake gene RD04_RS01335 IPR029419 Argininosuccinate lyase, C-terminal RD04_RS01335 IPR009049 Argininosuccinate lyase RD04_RS01335 IPR020557 Fumarate lyase, conserved site RD04_RS01335 IPR000362 Fumarate lyase family RD04_RS01335 IPR008948 L-Aspartase-like RD04_RS01335 IPR022761 Fumarate lyase, N-terminal RD04_RS01335 IPR024083 Fumarase/histidase, N-terminal RD04_RS01340 IPR042100 Bordetella uptake gene, domain 1 RD04_RS01340 IPR005064 Bordetella uptake gene RD04_RS01350 IPR036291 NAD(P)-binding domain superfamily RD04_RS01350 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS01350 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS01355 IPR000847 Transcription regulator HTH, LysR RD04_RS01355 IPR005119 LysR, substrate-binding RD04_RS01355 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS01355 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS01360 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS01360 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS01360 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme RD04_RS01360 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS01360 IPR006233 Cystathionine beta-lyase, bacterial RD04_RS01365 IPR014336 N-alpha-acetyl diaminobutyrate deacetylase DoeB RD04_RS01365 IPR007036 Succinylglutamate desuccinylase/aspartoacylase RD04_RS01380 IPR042100 Bordetella uptake gene, domain 1 RD04_RS01380 IPR005064 Bordetella uptake gene RD04_RS01385 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS01385 IPR006076 FAD dependent oxidoreductase RD04_RS01395 IPR002821 Hydantoinase A/oxoprolinase RD04_RS01395 IPR008040 Hydantoinaseoxoprolinase, N-terminal RD04_RS01405 IPR014068 Azurin RD04_RS01405 IPR000923 Blue (type 1) copper domain RD04_RS01405 IPR028871 Blue (type 1) copper protein, binding site RD04_RS01405 IPR008972 Cupredoxin RD04_RS01415 IPR010131 RND efflux system, outer membrane lipoprotein, NodT RD04_RS01415 IPR003423 Outer membrane efflux protein RD04_RS01420 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD04_RS01420 IPR001036 Acriflavin resistance protein RD04_RS01425 IPR006143 RND efflux pump, membrane fusion protein RD04_RS01425 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD04_RS01425 IPR022824 Multidrug resistance protein MdtA RD04_RS01430 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS01430 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS01430 IPR002577 Helix-turn-helix, HxlR type RD04_RS01440 IPR000060 BCCT transporter family RD04_RS01440 IPR018093 BCCT transporter, conserved site RD04_RS01445 IPR000847 Transcription regulator HTH, LysR RD04_RS01445 IPR005119 LysR, substrate-binding RD04_RS01445 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS01445 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS01450 IPR005218 Diacylglycerol/lipid kinase RD04_RS01450 IPR001206 Diacylglycerol kinase, catalytic domain RD04_RS01450 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal RD04_RS01450 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RD04_RS01460 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RD04_RS01460 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RD04_RS01485 IPR033900 Porin domain, Gram-negative type RD04_RS01485 IPR023614 Porin domain superfamily RD04_RS01485 IPR001702 Porin, Gram-negative type RD04_RS01485 IPR002299 Porin, Neisseria sp. type RD04_RS01490 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid RD04_RS01490 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 RD04_RS01490 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily RD04_RS01495 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit RD04_RS01495 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit RD04_RS01500 IPR010218 NADH dehydrogenase, subunit C RD04_RS01500 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily RD04_RS01500 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit RD04_RS01500 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site RD04_RS01505 IPR001135 NADH-quinone oxidoreductase, subunit D RD04_RS01505 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily RD04_RS01505 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site RD04_RS01505 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H RD04_RS01505 IPR029014 [NiFe]-hydrogenase, large subunit RD04_RS01510 IPR036249 Thioredoxin-like superfamily RD04_RS01510 IPR002023 NADH-quinone oxidoreductase subunit E-like RD04_RS01510 IPR042128 NuoE domain RD04_RS01510 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal RD04_RS01515 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily RD04_RS01515 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily RD04_RS01515 IPR011537 NADH ubiquinone oxidoreductase, F subunit RD04_RS01515 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site RD04_RS01515 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain RD04_RS01515 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain RD04_RS01515 IPR019554 Soluble ligand binding domain RD04_RS01520 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site RD04_RS01520 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS01520 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS01520 IPR006656 Molybdopterin oxidoreductase RD04_RS01520 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain RD04_RS01520 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding RD04_RS01520 IPR010228 NADH:ubiquinone oxidoreductase, subunit G RD04_RS01520 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal RD04_RS01525 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site RD04_RS01525 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H RD04_RS01530 IPR010226 NADH-quinone oxidoreductase, chain I RD04_RS01530 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD04_RS01530 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD04_RS01535 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 RD04_RS01535 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ RD04_RS01540 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K RD04_RS01540 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like RD04_RS01545 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup RD04_RS01545 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RD04_RS01545 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 RD04_RS01545 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RD04_RS01550 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal RD04_RS01550 IPR010227 NADH-quinone oxidoreductase, chain M/4 RD04_RS01550 IPR003918 NADH:ubiquinone oxidoreductase RD04_RS01550 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RD04_RS01555 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RD04_RS01555 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 RD04_RS01565 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS01565 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS01565 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS01565 IPR039423 TonB-dependent receptor-like RD04_RS01565 IPR030148 Catecholate siderophore receptor Fiu RD04_RS01565 IPR010105 TonB-dependent siderophore receptor RD04_RS01565 IPR012910 TonB-dependent receptor, plug domain RD04_RS01570 IPR039423 TonB-dependent receptor-like RD04_RS01570 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS01570 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS01570 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS01570 IPR012910 TonB-dependent receptor, plug domain RD04_RS01570 IPR030148 Catecholate siderophore receptor Fiu RD04_RS01570 IPR010105 TonB-dependent siderophore receptor RD04_RS01580 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS01580 IPR036291 NAD(P)-binding domain superfamily RD04_RS01580 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RD04_RS01580 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS01585 IPR039368 Acetolactate synthase large subunit, TPP binding domain RD04_RS01585 IPR012846 Acetolactate synthase, large subunit, biosynthetic RD04_RS01585 IPR012000 Thiamine pyrophosphate enzyme, central domain RD04_RS01585 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RD04_RS01585 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RD04_RS01585 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS01585 IPR029061 Thiamin diphosphate-binding fold RD04_RS01590 IPR005064 Bordetella uptake gene RD04_RS01590 IPR042100 Bordetella uptake gene, domain 1 RD04_RS01595 IPR005119 LysR, substrate-binding RD04_RS01595 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS01595 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS01595 IPR000847 Transcription regulator HTH, LysR RD04_RS01600 IPR036412 HAD-like superfamily RD04_RS01600 IPR023214 HAD superfamily RD04_RS01605 IPR041471 UvrB, interaction domain RD04_RS01605 IPR037235 TRCF-like, C-terminal domain RD04_RS01605 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS01605 IPR003711 CarD-like/TRCF domain RD04_RS01605 IPR036101 CarD-like/TRCF domain superfamily RD04_RS01605 IPR004576 Transcription-repair coupling factor RD04_RS01605 IPR001650 Helicase, C-terminal RD04_RS01605 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS01605 IPR011545 DEAD/DEAH box helicase domain RD04_RS01605 IPR005118 Transcription-repair-coupling factor, C-terminal domain RD04_RS01610 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site RD04_RS01610 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RD04_RS01610 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS01610 IPR034683 Cytidylyltransferase IspD/TarI RD04_RS01615 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site RD04_RS01615 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase RD04_RS01615 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily RD04_RS01625 IPR000146 Fructose-1,6-bisphosphatase class 1 RD04_RS01625 IPR028343 Fructose-1,6-bisphosphatase RD04_RS01625 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal RD04_RS01630 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold RD04_RS01630 IPR027268 Peptidase M4/M1, CTD superfamily RD04_RS01630 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal RD04_RS01630 IPR012779 Peptidase M1, alanyl aminopeptidase RD04_RS01630 IPR014782 Peptidase M1, membrane alanine aminopeptidase RD04_RS01630 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase RD04_RS01630 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily RD04_RS01630 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily RD04_RS01630 IPR042097 Aminopeptidase N-like , N-terminal RD04_RS01650 IPR029061 Thiamin diphosphate-binding fold RD04_RS01650 IPR012000 Thiamine pyrophosphate enzyme, central domain RD04_RS01650 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS01650 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RD04_RS01650 IPR039368 Acetolactate synthase large subunit, TPP binding domain RD04_RS01650 IPR012846 Acetolactate synthase, large subunit, biosynthetic RD04_RS01650 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RD04_RS01650 IPR000399 TPP-binding enzyme, conserved site RD04_RS01660 IPR010067 Aliphatic sulfonates-binding protein RD04_RS01660 IPR015168 SsuA/THI5-like RD04_RS01660 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS01665 IPR015859 ABC transporter, taurine import, TauD RD04_RS01665 IPR003593 AAA+ ATPase domain RD04_RS01665 IPR003439 ABC transporter-like RD04_RS01665 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS01665 IPR017871 ABC transporter, conserved site RD04_RS01670 IPR035906 MetI-like superfamily RD04_RS01670 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS01680 IPR000873 AMP-dependent synthetase/ligase RD04_RS01680 IPR020845 AMP-binding, conserved site RD04_RS01680 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS01680 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS01685 IPR013149 Alcohol dehydrogenase, C-terminal RD04_RS01685 IPR013154 Alcohol dehydrogenase, N-terminal RD04_RS01685 IPR011032 GroES-like superfamily RD04_RS01685 IPR036291 NAD(P)-binding domain superfamily RD04_RS01685 IPR020843 Polyketide synthase, enoylreductase domain RD04_RS01685 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site RD04_RS01690 IPR000485 AsnC-type HTH domain RD04_RS01690 IPR011711 GntR, C-terminal RD04_RS01690 IPR000524 Transcription regulator HTH, GntR RD04_RS01690 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS01690 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS01690 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS01700 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS01700 IPR000524 Transcription regulator HTH, GntR RD04_RS01700 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS01700 IPR011711 GntR, C-terminal RD04_RS01700 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS01710 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS01710 IPR036291 NAD(P)-binding domain superfamily RD04_RS01710 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS01710 IPR011283 Acetoacetyl-CoA reductase RD04_RS01725 IPR036038 Aminotransferase-like, PLP-dependent enzymes RD04_RS01725 IPR005784 D-amino acid aminotransferase RD04_RS01725 IPR018300 Aminotransferase, class IV, conserved site RD04_RS01725 IPR001544 Aminotransferase class IV RD04_RS01730 IPR017871 ABC transporter, conserved site RD04_RS01730 IPR003439 ABC transporter-like RD04_RS01730 IPR003593 AAA+ ATPase domain RD04_RS01730 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS01730 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type RD04_RS01735 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS01735 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM RD04_RS01735 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS01735 IPR035906 MetI-like superfamily RD04_RS01745 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS01750 IPR005119 LysR, substrate-binding RD04_RS01750 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS01750 IPR000847 Transcription regulator HTH, LysR RD04_RS01750 IPR017685 HTH-type transcriptional regulator ArgP RD04_RS01750 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS01755 IPR028351 Cyclolysin transport protein CyaE RD04_RS01755 IPR003423 Outer membrane efflux protein RD04_RS01760 IPR006144 Secretion protein HlyD, conserved site RD04_RS01760 IPR010129 Type I secretion membrane fusion protein, HlyD family RD04_RS01760 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RD04_RS01765 IPR017871 ABC transporter, conserved site RD04_RS01765 IPR039421 Type I protein exporter RD04_RS01765 IPR011527 ABC transporter type 1, transmembrane domain RD04_RS01765 IPR003439 ABC transporter-like RD04_RS01765 IPR036640 ABC transporter type 1, transmembrane domain superfamily RD04_RS01765 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS01765 IPR005074 Peptidase C39, bacteriocin processing RD04_RS01765 IPR039395 Peptidase C39-like A RD04_RS01765 IPR010132 ATPase, type I secretion system, HlyB RD04_RS01765 IPR003593 AAA+ ATPase domain RD04_RS01770 IPR003995 RTX toxin determinant A RD04_RS01770 IPR011049 Serralysin-like metalloprotease, C-terminal RD04_RS01770 IPR001343 RTX calcium-binding nonapeptide repeat RD04_RS01770 IPR018511 Hemolysin-type calcium-binding conserved site RD04_RS01770 IPR037017 Anthrax toxin, edema factor, central domain superfamily RD04_RS01770 IPR005165 Anthrax toxin, edema factor, central RD04_RS01770 IPR035099 Anthrax toxin, edema factor, C-terminal RD04_RS01770 IPR018504 RTX N-terminal RD04_RS01780 IPR003996 RTX toxin-activating protein C, bacteria RD04_RS01785 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS01785 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS01785 IPR010102 Succinate semialdehyde dehydrogenase RD04_RS01785 IPR015590 Aldehyde dehydrogenase domain RD04_RS01785 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS01785 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS01785 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS01795 IPR006076 FAD dependent oxidoreductase RD04_RS01795 IPR006278 Sarcosine oxidase subunit beta RD04_RS01795 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS01800 IPR003692 Hydantoinase B/oxoprolinase RD04_RS01805 IPR002821 Hydantoinase A/oxoprolinase RD04_RS01805 IPR008040 Hydantoinaseoxoprolinase, N-terminal RD04_RS01810 IPR000847 Transcription regulator HTH, LysR RD04_RS01810 IPR037414 Transcriptional activator protein LysR, PBP2 domain RD04_RS01810 IPR005119 LysR, substrate-binding RD04_RS01810 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS01810 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS01820 IPR033749 Polyprenyl synthetase, conserved site RD04_RS01820 IPR000092 Polyprenyl synthetase RD04_RS01820 IPR008949 Isoprenoid synthase domain superfamily RD04_RS01830 IPR018258 Ribosomal protein L21, conserved site RD04_RS01830 IPR036164 L21-like superfamily RD04_RS01830 IPR001787 Ribosomal protein L21 RD04_RS01830 IPR028909 Ribosomal protein L21-like RD04_RS01835 IPR001684 Ribosomal protein L27 RD04_RS01835 IPR018261 Ribosomal protein L27, conserved site RD04_RS01840 IPR006169 GTP1/OBG domain RD04_RS01840 IPR036726 GTP1/OBG domain superfamily RD04_RS01840 IPR006073 GTP binding domain RD04_RS01840 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS01840 IPR006074 GTP1/OBG, conserved site RD04_RS01840 IPR014100 GTP-binding protein Obg/CgtA RD04_RS01840 IPR031167 OBG-type guanine nucleotide-binding (G) domain RD04_RS01840 IPR035101 GTP-binding protein, Obg-type RD04_RS01845 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase RD04_RS01845 IPR001048 Aspartate/glutamate/uridylate kinase RD04_RS01845 IPR041739 Glutamate-5-kinase domain RD04_RS01845 IPR001057 Glutamate/acetylglutamate kinase RD04_RS01845 IPR011529 Glutamate 5-kinase RD04_RS01845 IPR019797 Glutamate 5-kinase, conserved site RD04_RS01845 IPR002478 PUA domain RD04_RS01845 IPR015947 PUA-like superfamily RD04_RS01845 IPR036974 PUA domain superfamily RD04_RS01845 IPR036393 Acetylglutamate kinase-like superfamily RD04_RS01885 IPR032623 FecR, N-terminal RD04_RS01885 IPR006860 FecR protein RD04_RS01885 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RD04_RS01890 IPR039423 TonB-dependent receptor-like RD04_RS01890 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS01890 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS01890 IPR010105 TonB-dependent siderophore receptor RD04_RS01890 IPR010917 TonB-dependent receptor, conserved site RD04_RS01890 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS01890 IPR010916 TonB box, conserved site RD04_RS01890 IPR012910 TonB-dependent receptor, plug domain RD04_RS01895 IPR023480 Uncharacterised protein family UPF0312/YceI RD04_RS01895 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily RD04_RS01895 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD04_RS01910 IPR032095 Saccharopine dehydrogenase, C-terminal RD04_RS01910 IPR036291 NAD(P)-binding domain superfamily RD04_RS01910 IPR005097 Saccharopine dehydrogenase, NADP binding domain RD04_RS01915 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal RD04_RS01915 IPR029066 PLP-binding barrel RD04_RS01915 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RD04_RS01915 IPR005730 Carboxynorspermidine decarboxylase RD04_RS01935 IPR039424 Solute-binding protein family 5 RD04_RS01935 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS01935 IPR023765 Solute-binding protein family 5, conserved site RD04_RS01935 IPR000914 Solute-binding protein family 5 domain RD04_RS01935 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS01940 IPR035906 MetI-like superfamily RD04_RS01940 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS01945 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS01945 IPR035906 MetI-like superfamily RD04_RS01950 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS01950 IPR003593 AAA+ ATPase domain RD04_RS01950 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS01950 IPR017871 ABC transporter, conserved site RD04_RS01950 IPR003439 ABC transporter-like RD04_RS01955 IPR023631 Amidase signature domain RD04_RS01955 IPR036928 Amidase signature (AS) superfamily RD04_RS01955 IPR020556 Amidase, conserved site RD04_RS01955 IPR000120 Amidase RD04_RS01960 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS01960 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS01960 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS01960 IPR005814 Aminotransferase class-III RD04_RS01970 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS01970 IPR039556 ICL/PEPM domain RD04_RS01970 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site RD04_RS01970 IPR040442 Pyruvate kinase-like domain superfamily RD04_RS01980 IPR006690 Outer membrane protein, OmpA-like, conserved site RD04_RS01980 IPR036737 OmpA-like domain superfamily RD04_RS01980 IPR006665 OmpA-like domain RD04_RS01980 IPR006664 Outer membrane protein, bacterial RD04_RS01980 IPR007055 BON domain RD04_RS01985 IPR001533 Pterin 4 alpha carbinolamine dehydratase RD04_RS01985 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily RD04_RS01995 IPR005835 Nucleotidyl transferase domain RD04_RS01995 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS02000 IPR011009 Protein kinase-like domain superfamily RD04_RS02000 IPR002575 Aminoglycoside phosphotransferase RD04_RS02005 IPR007543 LptD, C-terminal RD04_RS02005 IPR020889 LPS-assembly protein LptD RD04_RS02010 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type RD04_RS02010 IPR023034 Peptidyl-prolyl isomerase SurA RD04_RS02010 IPR015391 SurA N-terminal RD04_RS02010 IPR027304 Trigger factor/SurA domain superfamily RD04_RS02015 IPR023165 rRNA adenine dimethylase-like RD04_RS02015 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site RD04_RS02015 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS02015 IPR011530 Ribosomal RNA adenine dimethylase RD04_RS02015 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal RD04_RS02015 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RD04_RS02020 IPR018197 Glycerate kinase, restriction-enzyme-like fold RD04_RS02020 IPR036129 Glycerate kinase superfamily RD04_RS02020 IPR018193 Glycerate kinase, flavodoxin-like fold RD04_RS02020 IPR004381 Glycerate kinase RD04_RS02025 IPR040442 Pyruvate kinase-like domain superfamily RD04_RS02025 IPR011037 Pyruvate kinase-like, insert domain superfamily RD04_RS02025 IPR018209 Pyruvate kinase, active site RD04_RS02025 IPR015793 Pyruvate kinase, barrel RD04_RS02025 IPR015795 Pyruvate kinase, C-terminal RD04_RS02025 IPR015806 Pyruvate kinase, insert domain superfamily RD04_RS02025 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS02025 IPR001697 Pyruvate kinase RD04_RS02025 IPR036918 Pyruvate kinase, C-terminal domain superfamily RD04_RS02030 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain RD04_RS02035 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS02035 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS02035 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type RD04_RS02035 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS02035 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS02035 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS02035 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS02050 IPR005064 Bordetella uptake gene RD04_RS02050 IPR042100 Bordetella uptake gene, domain 1 RD04_RS02055 IPR042100 Bordetella uptake gene, domain 1 RD04_RS02055 IPR005064 Bordetella uptake gene RD04_RS02060 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS02060 IPR015863 ABC transporter, hemin import, HmuV RD04_RS02060 IPR017871 ABC transporter, conserved site RD04_RS02060 IPR003439 ABC transporter-like RD04_RS02060 IPR003593 AAA+ ATPase domain RD04_RS02065 IPR000522 ABC transporter, permease protein, BtuC-like RD04_RS02065 IPR037294 ABC transporter, BtuC-like RD04_RS02075 IPR006664 Outer membrane protein, bacterial RD04_RS02075 IPR006665 OmpA-like domain RD04_RS02075 IPR006690 Outer membrane protein, OmpA-like, conserved site RD04_RS02075 IPR036737 OmpA-like domain superfamily RD04_RS02075 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal RD04_RS02075 IPR039001 Peptidoglycan-associated lipoprotein RD04_RS02080 IPR036752 TolB, N-terminal domain superfamily RD04_RS02080 IPR007195 TolB, N-terminal RD04_RS02080 IPR014167 Tol-Pal system protein TolB RD04_RS02080 IPR011042 Six-bladed beta-propeller, TolB-like RD04_RS02080 IPR011659 WD40-like Beta Propeller RD04_RS02090 IPR014168 Tol-Pal system protein TolR RD04_RS02090 IPR003400 Biopolymer transport protein ExbD/TolR RD04_RS02095 IPR002898 MotA/TolQ/ExbB proton channel RD04_RS02095 IPR014163 Tol-Pal system, TolQ RD04_RS02100 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family RD04_RS02100 IPR029069 HotDog domain superfamily RD04_RS02100 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site RD04_RS02100 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase RD04_RS02100 IPR006683 Thioesterase domain RD04_RS02105 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) RD04_RS02105 IPR006195 Aminoacyl-tRNA synthetase, class II RD04_RS02105 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily RD04_RS02105 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain RD04_RS02105 IPR004154 Anticodon-binding RD04_RS02105 IPR002316 Proline-tRNA ligase, class IIa RD04_RS02105 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type RD04_RS02105 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 RD04_RS02105 IPR033730 Prokaryote proline-tRNA ligase core domain RD04_RS02105 IPR036621 Anticodon-binding domain superfamily RD04_RS02110 IPR022927 RNA pyrophosphohydrolase RppH RD04_RS02110 IPR020476 NUDIX hydrolase RD04_RS02110 IPR015797 NUDIX hydrolase-like domain superfamily RD04_RS02110 IPR000086 NUDIX hydrolase domain RD04_RS02110 IPR020084 NUDIX hydrolase, conserved site RD04_RS02115 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS02115 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS02115 IPR001789 Signal transduction response regulator, receiver domain RD04_RS02115 IPR011006 CheY-like superfamily RD04_RS02115 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS02115 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS02125 IPR003738 SOS response associated peptidase (SRAP) RD04_RS02125 IPR036590 SOS response associated peptidase-like RD04_RS02190 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal RD04_RS02335 IPR004872 Lipoprotein NlpA family RD04_RS02345 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain RD04_RS02345 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain RD04_RS02345 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily RD04_RS02345 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site RD04_RS02350 IPR003439 ABC transporter-like RD04_RS02350 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS02350 IPR017871 ABC transporter, conserved site RD04_RS02350 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS02350 IPR003593 AAA+ ATPase domain RD04_RS02355 IPR003593 AAA+ ATPase domain RD04_RS02355 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS02355 IPR017871 ABC transporter, conserved site RD04_RS02355 IPR003439 ABC transporter-like RD04_RS02355 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS02360 IPR001851 ABC transporter, permease RD04_RS02365 IPR030158 Galactoside transport system permease protein MglC RD04_RS02365 IPR001851 ABC transporter, permease RD04_RS02370 IPR028082 Periplasmic binding protein-like I RD04_RS02370 IPR028081 Leucine-binding protein domain RD04_RS02370 IPR000709 Leu/Ile/Val-binding protein RD04_RS02375 IPR020556 Amidase, conserved site RD04_RS02375 IPR023631 Amidase signature domain RD04_RS02375 IPR000120 Amidase RD04_RS02375 IPR036928 Amidase signature (AS) superfamily RD04_RS02375 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit RD04_RS02380 IPR001765 Carbonic anhydrase RD04_RS02380 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site RD04_RS02380 IPR036874 Carbonic anhydrase superfamily RD04_RS02395 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS02395 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial RD04_RS02395 IPR010997 HRDC-like superfamily RD04_RS02395 IPR004589 DNA helicase, ATP-dependent, RecQ type RD04_RS02395 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS02395 IPR018982 RQC domain RD04_RS02395 IPR001650 Helicase, C-terminal RD04_RS02395 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RD04_RS02395 IPR011545 DEAD/DEAH box helicase domain RD04_RS02395 IPR002121 HRDC domain RD04_RS02395 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS02400 IPR041445 RuvB, AAA lid domain RD04_RS02400 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS02400 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS02400 IPR004605 DNA helicase, Holliday junction RuvB-type RD04_RS02400 IPR008823 RuvB C-terminal winged helix domain RD04_RS02400 IPR003593 AAA+ ATPase domain RD04_RS02400 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS02400 IPR008824 RuvB-like P-loop domain RD04_RS02405 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD04_RS02405 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site RD04_RS02405 IPR001926 Pyridoxal-phosphate dependent enzyme RD04_RS02410 IPR001509 NAD-dependent epimerase/dehydratase RD04_RS02410 IPR036291 NAD(P)-binding domain superfamily RD04_RS02415 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 RD04_RS02415 IPR000085 Bacterial DNA recombination protein RuvA RD04_RS02415 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial RD04_RS02415 IPR010994 RuvA domain 2-like RD04_RS02415 IPR012340 Nucleic acid-binding, OB-fold RD04_RS02415 IPR011114 Holliday junction DNA helicase RuvA, C-terminal RD04_RS02415 IPR036267 RuvA, C-terminal domain superfamily RD04_RS02420 IPR002176 Crossover junction endodeoxyribonuclease RuvC RD04_RS02420 IPR012337 Ribonuclease H-like superfamily RD04_RS02420 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site RD04_RS02420 IPR036397 Ribonuclease H superfamily RD04_RS02425 IPR024051 AICAR transformylase, duplicated domain superfamily RD04_RS02425 IPR011607 Methylglyoxal synthase-like domain RD04_RS02425 IPR036914 Methylglyoxal synthase-like domain superfamily RD04_RS02425 IPR002695 Bifunctional purine biosynthesis protein PurH-like RD04_RS02425 IPR016193 Cytidine deaminase-like RD04_RS02430 IPR005412 DNA-binding protein Fis RD04_RS02430 IPR002197 DNA binding HTH domain, Fis-type RD04_RS02430 IPR009057 Homeobox-like domain superfamily RD04_RS02435 IPR001269 tRNA-dihydrouridine synthase RD04_RS02435 IPR013785 Aldolase-type TIM barrel RD04_RS02435 IPR035587 DUS-like, FMN-binding domain RD04_RS02435 IPR032887 tRNA-dihydrouridine synthase B RD04_RS02435 IPR018517 tRNA-dihydrouridine synthase, conserved site RD04_RS02435 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 RD04_RS02435 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal RD04_RS02450 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site RD04_RS02450 IPR001714 Peptidase M24, methionine aminopeptidase RD04_RS02450 IPR000994 Peptidase M24 RD04_RS02450 IPR036005 Creatinase/aminopeptidase-like RD04_RS02450 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RD04_RS02450 IPR007865 Aminopeptidase P, N-terminal RD04_RS02475 IPR002299 Porin, Neisseria sp. type RD04_RS02475 IPR001702 Porin, Gram-negative type RD04_RS02475 IPR023614 Porin domain superfamily RD04_RS02475 IPR033900 Porin domain, Gram-negative type RD04_RS02485 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS02485 IPR005835 Nucleotidyl transferase domain RD04_RS02485 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type RD04_RS02490 IPR019734 Tetratricopeptide repeat RD04_RS02490 IPR011990 Tetratricopeptide-like helical domain superfamily RD04_RS02490 IPR013026 Tetratricopeptide repeat-containing domain RD04_RS02490 IPR001915 Peptidase M48 RD04_RS02490 IPR030873 Beta-barrel assembly-enhancing protease RD04_RS02495 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS02495 IPR000952 AB hydrolase 4, conserved site RD04_RS02495 IPR029058 Alpha/Beta hydrolase fold RD04_RS02495 IPR012020 AB hydrolase 4 family RD04_RS02510 IPR018300 Aminotransferase, class IV, conserved site RD04_RS02510 IPR033939 Branched-chain aminotransferase RD04_RS02510 IPR005785 Branched-chain amino acid aminotransferase I RD04_RS02510 IPR036038 Aminotransferase-like, PLP-dependent enzymes RD04_RS02510 IPR001544 Aminotransferase class IV RD04_RS02525 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS02525 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RD04_RS02525 IPR014014 RNA helicase, DEAD-box type, Q motif RD04_RS02525 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS02525 IPR001650 Helicase, C-terminal RD04_RS02525 IPR011545 DEAD/DEAH box helicase domain RD04_RS02525 IPR028622 ATP-dependent RNA helicase RhlE RD04_RS02545 IPR036653 CinA-like, C-terminal RD04_RS02545 IPR008135 Competence-induced protein CinA RD04_RS02545 IPR041424 CinA, KH domain RD04_RS02545 IPR008136 CinA, C-terminal RD04_RS02545 IPR001453 MoaB/Mog domain RD04_RS02545 IPR036425 MoaB/Mog-like domain superfamily RD04_RS02550 IPR029016 GAF-like domain superfamily RD04_RS02550 IPR014757 Transcription regulator IclR, C-terminal RD04_RS02550 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS02550 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS02550 IPR005471 Transcription regulator IclR, N-terminal RD04_RS02555 IPR008430 Cytotoxic necrotizing factor, Rho-activating domain RD04_RS02555 IPR041508 Toxin complex C-like repeat RD04_RS02555 IPR037040 Cytotoxic necrotizing factor, Rho-activating domain superfamily RD04_RS02555 IPR011324 Cytotoxic necrotizing factor-like, catalytic RD04_RS02555 IPR022385 Rhs repeat-associated core RD04_RS02560 IPR005064 Bordetella uptake gene RD04_RS02560 IPR042100 Bordetella uptake gene, domain 1 RD04_RS02570 IPR013785 Aldolase-type TIM barrel RD04_RS02570 IPR005720 Dihydroorotate dehydrogenase domain RD04_RS02570 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 RD04_RS02570 IPR005719 Dihydroorotate dehydrogenase, class 2 RD04_RS02570 IPR001295 Dihydroorotate dehydrogenase, conserved site RD04_RS02575 IPR007472 N-end rule aminoacyl transferase, C-terminal RD04_RS02575 IPR016181 Acyl-CoA N-acyltransferase RD04_RS02575 IPR017138 Aspartate/glutamate leucyltransferase RD04_RS02575 IPR030700 N-end rule aminoacyl transferase RD04_RS02575 IPR007471 N-end aminoacyl transferase, N-terminal RD04_RS02580 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal RD04_RS02580 IPR016181 Acyl-CoA N-acyltransferase RD04_RS02580 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase RD04_RS02590 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS02590 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS02590 IPR005119 LysR, substrate-binding RD04_RS02590 IPR000847 Transcription regulator HTH, LysR RD04_RS02630 IPR000524 Transcription regulator HTH, GntR RD04_RS02630 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS02630 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS02630 IPR011711 GntR, C-terminal RD04_RS02630 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS02635 IPR012000 Thiamine pyrophosphate enzyme, central domain RD04_RS02635 IPR029061 Thiamin diphosphate-binding fold RD04_RS02635 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RD04_RS02635 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RD04_RS02635 IPR012846 Acetolactate synthase, large subunit, biosynthetic RD04_RS02635 IPR039368 Acetolactate synthase large subunit, TPP binding domain RD04_RS02635 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS02640 IPR042100 Bordetella uptake gene, domain 1 RD04_RS02640 IPR005064 Bordetella uptake gene RD04_RS02645 IPR003819 TauD/TfdA-like domain RD04_RS02645 IPR042098 Taurine dioxygenase TauD-like superfamily RD04_RS02650 IPR015884 Malic enzyme, conserved site RD04_RS02650 IPR042113 Phosphate acetyltransferase, domain 1 RD04_RS02650 IPR012301 Malic enzyme, N-terminal domain RD04_RS02650 IPR037062 Malic enzyme, N-terminal domain superfamily RD04_RS02650 IPR012302 Malic enzyme, NAD-binding RD04_RS02650 IPR002505 Phosphate acetyl/butaryl transferase RD04_RS02650 IPR012188 NAD(P)-dependent malic enzyme RD04_RS02650 IPR036291 NAD(P)-binding domain superfamily RD04_RS02650 IPR042112 Phosphate acetyltransferase, domain 2 RD04_RS02660 IPR035906 MetI-like superfamily RD04_RS02660 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS02665 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS02665 IPR035906 MetI-like superfamily RD04_RS02670 IPR017871 ABC transporter, conserved site RD04_RS02670 IPR003439 ABC transporter-like RD04_RS02670 IPR003593 AAA+ ATPase domain RD04_RS02670 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS02670 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS02685 IPR005119 LysR, substrate-binding RD04_RS02685 IPR000847 Transcription regulator HTH, LysR RD04_RS02685 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS02685 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS02700 IPR011991 ArsR-like helix-turn-helix domain RD04_RS02700 IPR001845 HTH ArsR-type DNA-binding domain RD04_RS02700 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS02700 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS02715 IPR004711 Benzoate transporter RD04_RS02720 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD04_RS02720 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD04_RS02725 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS02725 IPR004821 Cytidyltransferase-like domain RD04_RS02725 IPR001980 Phosphopantetheine adenylyltransferase RD04_RS02730 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS02730 IPR004398 RNA methyltransferase, RsmD RD04_RS02730 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RD04_RS02735 IPR004390 Signal-recognition particle receptor FtsY RD04_RS02735 IPR013822 Signal recognition particle SRP54, helical bundle RD04_RS02735 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS02735 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain RD04_RS02735 IPR003593 AAA+ ATPase domain RD04_RS02735 IPR036225 SRP/SRP receptor, N-terminal RD04_RS02735 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily RD04_RS02750 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS02750 IPR005769 ABC transporter, permease PhnE/PtxC RD04_RS02750 IPR035906 MetI-like superfamily RD04_RS02755 IPR005769 ABC transporter, permease PhnE/PtxC RD04_RS02755 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS02755 IPR035906 MetI-like superfamily RD04_RS02760 IPR017871 ABC transporter, conserved site RD04_RS02760 IPR003439 ABC transporter-like RD04_RS02760 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS02760 IPR012693 ABC transporter, phosphonate import, PhnC RD04_RS02760 IPR003593 AAA+ ATPase domain RD04_RS02770 IPR017871 ABC transporter, conserved site RD04_RS02770 IPR012693 ABC transporter, phosphonate import, PhnC RD04_RS02770 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS02770 IPR003593 AAA+ ATPase domain RD04_RS02770 IPR003439 ABC transporter-like RD04_RS02790 IPR036144 RibA-like superfamily RD04_RS02790 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB RD04_RS02790 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RD04_RS02790 IPR032677 GTP cyclohydrolase II RD04_RS02795 IPR002180 Lumazine/riboflavin synthase RD04_RS02795 IPR034964 Lumazine synthase RD04_RS02795 IPR036467 Lumazine/riboflavin synthase superfamily RD04_RS02800 IPR011605 NusB antitermination factor RD04_RS02800 IPR006027 NusB/RsmB/TIM44 RD04_RS02800 IPR035926 NusB-like superfamily RD04_RS02805 IPR010918 PurM-like, C-terminal domain RD04_RS02805 IPR016188 PurM-like, N-terminal domain RD04_RS02805 IPR036676 PurM-like, C-terminal domain superfamily RD04_RS02805 IPR036921 PurM-like, N-terminal domain superfamily RD04_RS02805 IPR006283 Thiamine-monophosphate kinase RD04_RS02810 IPR036681 PgpA-like superfamily RD04_RS02810 IPR007686 YutG/PgpA domain RD04_RS02810 IPR026037 Phosphatidylglycerophosphatase A RD04_RS02815 IPR001453 MoaB/Mog domain RD04_RS02815 IPR036425 MoaB/Mog-like domain superfamily RD04_RS02815 IPR008135 Competence-induced protein CinA RD04_RS02815 IPR041424 CinA, KH domain RD04_RS02815 IPR008136 CinA, C-terminal RD04_RS02815 IPR036653 CinA-like, C-terminal RD04_RS02820 IPR013785 Aldolase-type TIM barrel RD04_RS02820 IPR018089 Orotidine 5'-phosphate decarboxylase, active site RD04_RS02820 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 RD04_RS02820 IPR001754 Orotidine 5'-phosphate decarboxylase domain RD04_RS02820 IPR011060 Ribulose-phosphate binding barrel RD04_RS02825 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS02825 IPR023753 FAD/NAD(P)-binding domain RD04_RS02830 IPR036945 Diacylglycerol kinase (DAGK) superfamily RD04_RS02830 IPR033718 Diacylglycerol kinase, prokaryotic RD04_RS02830 IPR000829 DAGK family RD04_RS02835 IPR023679 Uncharacterised protein family UPF0761, bacterial RD04_RS02835 IPR017039 Virulence factor BrkB RD04_RS02840 IPR004899 Pertactin, central region RD04_RS02840 IPR005546 Autotransporter beta-domain RD04_RS02840 IPR036709 Autotransporter beta-domain superfamily RD04_RS02840 IPR006315 Outer membrane autotransporter barrel RD04_RS02840 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS02840 IPR003991 Pertactin virulence factor family RD04_RS02840 IPR011050 Pectin lyase fold/virulence factor RD04_RS02845 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RD04_RS02845 IPR018370 Chaperonin Cpn60, conserved site RD04_RS02845 IPR001844 Chaperonin Cpn60 RD04_RS02845 IPR027409 GroEL-like apical domain superfamily RD04_RS02845 IPR027413 GroEL-like equatorial domain superfamily RD04_RS02845 IPR002423 Chaperonin Cpn60/TCP-1 family RD04_RS02850 IPR018369 Chaperonin GroES, conserved site RD04_RS02850 IPR011032 GroES-like superfamily RD04_RS02850 IPR037124 GroES chaperonin superfamily RD04_RS02850 IPR020818 GroES chaperonin family RD04_RS02870 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RD04_RS02870 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily RD04_RS02870 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS02880 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS02880 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS02880 IPR000847 Transcription regulator HTH, LysR RD04_RS02880 IPR005119 LysR, substrate-binding RD04_RS02885 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS02885 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily RD04_RS02885 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RD04_RS02900 IPR000160 GGDEF domain RD04_RS02900 IPR029787 Nucleotide cyclase RD04_RS02900 IPR009050 Globin-like superfamily RD04_RS02900 IPR012292 Globin/Protoglobin RD04_RS02900 IPR039435 Diguanylate cyclase DosC, globin sensor domain RD04_RS02905 IPR037522 HD-GYP domain RD04_RS02905 IPR003607 HD/PDEase domain RD04_RS02905 IPR011006 CheY-like superfamily RD04_RS02905 IPR001789 Signal transduction response regulator, receiver domain RD04_RS02935 IPR024775 DinB-like domain RD04_RS02935 IPR034660 DinB/YfiT-like putative metalloenzymes RD04_RS02935 IPR017806 Ergothioneine biosynthesis protein EgtB RD04_RS02935 IPR032890 Hercynine oxygenase, Actinobacteria RD04_RS02935 IPR005532 Sulfatase-modifying factor enzyme RD04_RS02935 IPR042095 Sulfatase-modifying factor enzyme superfamily RD04_RS02935 IPR016187 C-type lectin fold RD04_RS02940 IPR019257 Histidine-specific methyltransferase, SAM-dependent RD04_RS02940 IPR017804 Methyltransferase EgtD-like RD04_RS02940 IPR032888 Histidine N-alpha-methyltransferase, Actinobacteria-type RD04_RS02940 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS02940 IPR035094 Histidine N-alpha-methyltransferase RD04_RS02950 IPR030874 Cardiolipin synthase, Firmicutes-type RD04_RS02950 IPR022924 Cardiolipin synthase RD04_RS02950 IPR025202 Phospholipase D-like domain RD04_RS02950 IPR001736 Phospholipase D/Transphosphatidylase RD04_RS02950 IPR027379 Cardiolipin synthase N-terminal RD04_RS02960 IPR027283 Glutamate synthase large subunit-like protein, bacteria RD04_RS02960 IPR013785 Aldolase-type TIM barrel RD04_RS02960 IPR024188 Glutamate synthase large subunit-like protein RD04_RS02960 IPR002932 Glutamate synthase domain RD04_RS02965 IPR007272 Sulphur transport domain RD04_RS02970 IPR004776 Membrane transport protein RD04_RS02975 IPR016181 Acyl-CoA N-acyltransferase RD04_RS02975 IPR000182 GNAT domain RD04_RS02975 IPR039143 Glucosamine 6-phosphate N-acetyltransferase RD04_RS02995 IPR001900 Ribonuclease II/R RD04_RS02995 IPR022966 Ribonuclease II/R, conserved site RD04_RS02995 IPR004476 Ribonuclease II/ribonuclease R RD04_RS02995 IPR040476 RNase II/RNase R, cold shock domain RD04_RS02995 IPR012340 Nucleic acid-binding, OB-fold RD04_RS02995 IPR013223 Ribonuclease B, N-terminal OB domain RD04_RS02995 IPR011129 Cold shock domain RD04_RS02995 IPR013668 Ribonuclease R winged-helix domain RD04_RS02995 IPR022967 RNA-binding domain, S1 RD04_RS02995 IPR003029 S1 domain RD04_RS02995 IPR011805 Ribonuclease R RD04_RS03000 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB RD04_RS03000 IPR029028 Alpha/beta knot methyltransferases RD04_RS03000 IPR029064 50S ribosomal protein L30e-like RD04_RS03000 IPR004441 RNA methyltransferase TrmH family RD04_RS03000 IPR001537 tRNA/rRNA methyltransferase, SpoU type RD04_RS03000 IPR013123 RNA 2-O ribose methyltransferase, substrate binding RD04_RS03000 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD04_RS03005 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS03005 IPR006237 L-methionine gamma-lyase RD04_RS03005 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS03005 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme RD04_RS03005 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS03010 IPR005123 Oxoglutarate/iron-dependent dioxygenase RD04_RS03010 IPR006620 Prolyl 4-hydroxylase, alpha subunit RD04_RS03010 IPR041097 PKHD-type hydroxylase C-terminal domain RD04_RS03010 IPR023550 PKHD-type hydroxylase RD04_RS03015 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily RD04_RS03015 IPR000119 Histone-like DNA-binding protein RD04_RS03015 IPR020816 Histone-like DNA-binding protein, conserved site RD04_RS03030 IPR002898 MotA/TolQ/ExbB proton channel RD04_RS03035 IPR003400 Biopolymer transport protein ExbD/TolR RD04_RS03040 IPR001789 Signal transduction response regulator, receiver domain RD04_RS03040 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS03040 IPR011006 CheY-like superfamily RD04_RS03040 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03040 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS03040 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS03045 IPR013727 Two-component sensor kinase, N-terminal RD04_RS03045 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS03045 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS03045 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS03045 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS03045 IPR005467 Histidine kinase domain RD04_RS03045 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS03050 IPR023051 Potassium uptake protein, low affinity, Kup RD04_RS03050 IPR003855 Potassium transporter RD04_RS03055 IPR001518 Argininosuccinate synthase RD04_RS03055 IPR018223 Argininosuccinate synthase, conserved site RD04_RS03055 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body RD04_RS03055 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS03055 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail RD04_RS03055 IPR023437 Argininosuccinate synthase, type 2 subfamily RD04_RS03060 IPR006130 Aspartate/ornithine carbamoyltransferase RD04_RS03060 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding RD04_RS03060 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain RD04_RS03060 IPR002292 Ornithine/putrescine carbamoyltransferase RD04_RS03060 IPR024904 Ornithine carbamoyltransferase RD04_RS03060 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily RD04_RS03065 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS03065 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS03065 IPR005814 Aminotransferase class-III RD04_RS03065 IPR004636 Acetylornithine/Succinylornithine transaminase family RD04_RS03065 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS03075 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03075 IPR000847 Transcription regulator HTH, LysR RD04_RS03075 IPR005119 LysR, substrate-binding RD04_RS03075 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03080 IPR036291 NAD(P)-binding domain superfamily RD04_RS03080 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS03085 IPR036291 NAD(P)-binding domain superfamily RD04_RS03085 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RD04_RS03085 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD04_RS03090 IPR042100 Bordetella uptake gene, domain 1 RD04_RS03090 IPR005064 Bordetella uptake gene RD04_RS03105 IPR000524 Transcription regulator HTH, GntR RD04_RS03105 IPR011711 GntR, C-terminal RD04_RS03105 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03105 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03105 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS03115 IPR036259 MFS transporter superfamily RD04_RS03115 IPR020846 Major facilitator superfamily domain RD04_RS03115 IPR011701 Major facilitator superfamily RD04_RS03125 IPR004674 Alkylhydroperoxidase AhpD RD04_RS03125 IPR004675 Alkylhydroperoxidase AhpD core RD04_RS03125 IPR003779 Carboxymuconolactone decarboxylase-like RD04_RS03125 IPR029032 AhpD-like RD04_RS03130 IPR036249 Thioredoxin-like superfamily RD04_RS03130 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RD04_RS03130 IPR024706 Peroxiredoxin, AhpC-type RD04_RS03130 IPR013766 Thioredoxin domain RD04_RS03135 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS03135 IPR003660 HAMP domain RD04_RS03135 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS03135 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS03135 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS03135 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS03135 IPR005467 Histidine kinase domain RD04_RS03145 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS03145 IPR001789 Signal transduction response regulator, receiver domain RD04_RS03145 IPR011006 CheY-like superfamily RD04_RS03145 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03145 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS03145 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS03150 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB RD04_RS03150 IPR000905 Gcp-like domain RD04_RS03155 IPR036895 Uracil-DNA glycosylase-like domain superfamily RD04_RS03155 IPR005122 Uracil-DNA glycosylase-like RD04_RS03155 IPR005273 Uracil-DNA glycosylase family 4 RD04_RS03160 IPR011701 Major facilitator superfamily RD04_RS03160 IPR023727 Lysophospholipid transporter LplT RD04_RS03160 IPR036259 MFS transporter superfamily RD04_RS03165 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS03165 IPR003395 RecF/RecN/SMC, N-terminal RD04_RS03165 IPR010935 SMCs flexible hinge RD04_RS03165 IPR036277 SMCs flexible hinge superfamily RD04_RS03165 IPR011890 Structural maintenance of chromosomes protein, prokaryotic RD04_RS03165 IPR024704 Structural maintenance of chromosomes protein RD04_RS03175 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type RD04_RS03175 IPR018239 NAD-dependent DNA ligase, active site RD04_RS03175 IPR010994 RuvA domain 2-like RD04_RS03175 IPR001357 BRCT domain RD04_RS03175 IPR033136 NAD-dependent DNA ligase, conserved site RD04_RS03175 IPR036420 BRCT domain superfamily RD04_RS03175 IPR001679 NAD-dependent DNA ligase RD04_RS03175 IPR041663 DisA/LigA, helix-hairpin-helix motif RD04_RS03175 IPR013839 NAD-dependent DNA ligase, adenylation RD04_RS03175 IPR013840 NAD-dependent DNA ligase, N-terminal RD04_RS03175 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 RD04_RS03175 IPR012340 Nucleic acid-binding, OB-fold RD04_RS03175 IPR004150 NAD-dependent DNA ligase, OB-fold RD04_RS03180 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site RD04_RS03180 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type RD04_RS03190 IPR006008 Intracellular septation protein A RD04_RS03195 IPR002579 Peptide methionine sulphoxide reductase MrsB RD04_RS03195 IPR011057 Mss4-like superfamily RD04_RS03195 IPR028427 Peptide methionine sulfoxide reductase RD04_RS03200 IPR017871 ABC transporter, conserved site RD04_RS03200 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS03200 IPR003439 ABC transporter-like RD04_RS03200 IPR003593 AAA+ ATPase domain RD04_RS03205 IPR003339 ABC/ECF transporter, transmembrane component RD04_RS03210 IPR003784 BioY protein RD04_RS03225 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS03225 IPR003439 ABC transporter-like RD04_RS03225 IPR017871 ABC transporter, conserved site RD04_RS03225 IPR003593 AAA+ ATPase domain RD04_RS03225 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS03230 IPR005785 Branched-chain amino acid aminotransferase I RD04_RS03230 IPR033939 Branched-chain aminotransferase RD04_RS03230 IPR036038 Aminotransferase-like, PLP-dependent enzymes RD04_RS03230 IPR018300 Aminotransferase, class IV, conserved site RD04_RS03230 IPR001544 Aminotransferase class IV RD04_RS03245 IPR001851 ABC transporter, permease RD04_RS03255 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS03255 IPR003593 AAA+ ATPase domain RD04_RS03255 IPR003439 ABC transporter-like RD04_RS03255 IPR017871 ABC transporter, conserved site RD04_RS03255 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS03260 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS03260 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS03260 IPR017871 ABC transporter, conserved site RD04_RS03260 IPR003593 AAA+ ATPase domain RD04_RS03260 IPR003439 ABC transporter-like RD04_RS03265 IPR004036 Endonuclease III-like, conserved site-2 RD04_RS03265 IPR011257 DNA glycosylase RD04_RS03265 IPR003265 HhH-GPD domain RD04_RS03265 IPR000445 Helix-hairpin-helix motif RD04_RS03265 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RD04_RS03265 IPR005759 Endonuclease III RD04_RS03265 IPR004035 Endonuclease III, iron-sulphur binding site RD04_RS03265 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif RD04_RS03270 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD04_RS03270 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD04_RS03270 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB RD04_RS03270 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria RD04_RS03270 IPR007202 4Fe-4S domain RD04_RS03280 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS03280 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain RD04_RS03280 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS03280 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS03280 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase RD04_RS03280 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS03280 IPR033892 Ferredoxin--NADP reductase, bacteria RD04_RS03285 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD04_RS03285 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD04_RS03285 IPR000813 7Fe ferredoxin RD04_RS03285 IPR022569 Ferredoxin, C-terminal RD04_RS03290 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal RD04_RS03290 IPR006406 Nicotinate phosphoribosyltransferase RD04_RS03290 IPR007229 Nicotinate phosphoribosyltransferase family RD04_RS03290 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase RD04_RS03290 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain RD04_RS03295 IPR019897 RidA, conserved site RD04_RS03295 IPR035959 RutC-like superfamily RD04_RS03295 IPR006175 YjgF/YER057c/UK114 family RD04_RS03295 IPR035709 RutC family, YoaB-like RD04_RS03305 IPR024079 Metallopeptidase, catalytic domain superfamily RD04_RS03305 IPR010384 MtfA family RD04_RS03305 IPR042252 MtfA, N-terminal RD04_RS03310 IPR007685 RelA/SpoT RD04_RS03310 IPR003607 HD/PDEase domain RD04_RS03310 IPR004811 RelA/SpoT family RD04_RS03310 IPR002912 ACT domain RD04_RS03310 IPR033655 RelA, TGS domain RD04_RS03310 IPR012676 TGS-like RD04_RS03310 IPR012675 Beta-grasp domain superfamily RD04_RS03310 IPR004095 TGS RD04_RS03315 IPR036264 Bacterial exopeptidase dimerisation domain RD04_RS03315 IPR011650 Peptidase M20, dimerisation domain RD04_RS03315 IPR010169 Acetylornithine deacetylase ArgE RD04_RS03315 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site RD04_RS03315 IPR002933 Peptidase M20 RD04_RS03320 IPR001926 Pyridoxal-phosphate dependent enzyme RD04_RS03320 IPR006654 Tryptophan synthase, beta chain RD04_RS03320 IPR023026 Tryptophan synthase beta chain/beta chain-like RD04_RS03320 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD04_RS03320 IPR006653 Tryptophan synthase, beta chain, conserved site RD04_RS03325 IPR013785 Aldolase-type TIM barrel RD04_RS03325 IPR002028 Tryptophan synthase, alpha chain RD04_RS03325 IPR018204 Tryptophan synthase, alpha chain, active site RD04_RS03325 IPR011060 Ribulose-phosphate binding barrel RD04_RS03330 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS03330 IPR041010 Acetyl-coA carboxylase zinc finger domain RD04_RS03330 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit RD04_RS03330 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal RD04_RS03330 IPR034733 Acetyl-CoA carboxylase RD04_RS03335 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RD04_RS03335 IPR018550 Lipid A 3-O-deacylase-related RD04_RS03350 IPR022967 RNA-binding domain, S1 RD04_RS03350 IPR004659 Ribonuclease E/G RD04_RS03350 IPR028878 Ribonuclease E RD04_RS03350 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G RD04_RS03350 IPR012340 Nucleic acid-binding, OB-fold RD04_RS03350 IPR021968 Polyribonucleotide phosphorylase C-terminal RD04_RS03350 IPR003029 S1 domain RD04_RS03355 IPR020103 Pseudouridine synthase, catalytic domain superfamily RD04_RS03355 IPR036986 RNA-binding S4 domain superfamily RD04_RS03355 IPR002942 RNA-binding S4 domain RD04_RS03355 IPR006225 Pseudouridine synthase, RluC/RluD RD04_RS03355 IPR006145 Pseudouridine synthase, RsuA/RluA RD04_RS03355 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site RD04_RS03360 IPR041492 Haloacid dehalogenase-like hydrolase RD04_RS03360 IPR036412 HAD-like superfamily RD04_RS03360 IPR006439 HAD hydrolase, subfamily IA RD04_RS03360 IPR023214 HAD superfamily RD04_RS03360 IPR037512 Phosphoglycolate phosphatase, prokaryotic RD04_RS03360 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic RD04_RS03360 IPR006549 HAD-superfamily hydrolase,subfamily IIIA RD04_RS03360 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RD04_RS03365 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily RD04_RS03365 IPR000572 Oxidoreductase, molybdopterin-binding domain RD04_RS03365 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP RD04_RS03365 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS03370 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ RD04_RS03370 IPR013130 Ferric reductase transmembrane component-like domain RD04_RS03385 IPR023606 CoA-transferase family III domain superfamily RD04_RS03385 IPR003673 CoA-transferase family III RD04_RS03390 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03390 IPR037403 HTH-type transcriptional regulator CynR, PBP2 domain RD04_RS03390 IPR005119 LysR, substrate-binding RD04_RS03390 IPR000847 Transcription regulator HTH, LysR RD04_RS03390 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03400 IPR003673 CoA-transferase family III RD04_RS03400 IPR023606 CoA-transferase family III domain superfamily RD04_RS03400 IPR026347 Mesaconyl-CoA isomerase RD04_RS03420 IPR005119 LysR, substrate-binding RD04_RS03420 IPR000847 Transcription regulator HTH, LysR RD04_RS03420 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03420 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03425 IPR035959 RutC-like superfamily RD04_RS03425 IPR006175 YjgF/YER057c/UK114 family RD04_RS03425 IPR038743 YjgH-like RD04_RS03430 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS03430 IPR000971 Globin RD04_RS03430 IPR012292 Globin/Protoglobin RD04_RS03430 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS03430 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain RD04_RS03430 IPR009050 Globin-like superfamily RD04_RS03430 IPR023950 Flavohemoprotein RD04_RS03430 IPR001834 NADH:cytochrome b5 reductase-like RD04_RS03430 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS03430 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS03435 IPR006160 Short chain fatty acid transporter AtoE RD04_RS03435 IPR006161 Conserved hypothetical protein CHP00336 RD04_RS03440 IPR015590 Aldehyde dehydrogenase domain RD04_RS03440 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS03440 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS03440 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS03440 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS03440 IPR005932 1-pyrroline-5-carboxylate dehydrogenase RD04_RS03440 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS03445 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03445 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS03445 IPR011711 GntR, C-terminal RD04_RS03445 IPR000524 Transcription regulator HTH, GntR RD04_RS03445 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03455 IPR002059 Cold-shock protein, DNA-binding RD04_RS03455 IPR012156 Cold shock, CspA RD04_RS03455 IPR011129 Cold shock domain RD04_RS03455 IPR019844 Cold-shock (CSD) domain RD04_RS03455 IPR012340 Nucleic acid-binding, OB-fold RD04_RS03460 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03460 IPR000847 Transcription regulator HTH, LysR RD04_RS03460 IPR005119 LysR, substrate-binding RD04_RS03460 IPR037403 HTH-type transcriptional regulator CynR, PBP2 domain RD04_RS03460 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03480 IPR020616 Thiolase, N-terminal RD04_RS03480 IPR020617 Thiolase, C-terminal RD04_RS03480 IPR020610 Thiolase, active site RD04_RS03480 IPR002155 Thiolase RD04_RS03480 IPR016039 Thiolase-like RD04_RS03480 IPR020613 Thiolase, conserved site RD04_RS03480 IPR020615 Thiolase, acyl-enzyme intermediate active site RD04_RS03490 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS03490 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS03490 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS03490 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS03490 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS03490 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS03495 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03495 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03495 IPR000847 Transcription regulator HTH, LysR RD04_RS03495 IPR005119 LysR, substrate-binding RD04_RS03495 IPR037412 HTH-type transcriptional regulator IlvR, PBP2 domain RD04_RS03500 IPR042100 Bordetella uptake gene, domain 1 RD04_RS03500 IPR005064 Bordetella uptake gene RD04_RS03505 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS03505 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS03505 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS03505 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS03510 IPR023606 CoA-transferase family III domain superfamily RD04_RS03510 IPR003673 CoA-transferase family III RD04_RS03515 IPR000644 CBS domain RD04_RS03515 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS03515 IPR016169 FAD-binding, type PCMH, subdomain 2 RD04_RS03515 IPR005496 Integral membrane protein TerC RD04_RS03515 IPR005170 Transporter-associated domain RD04_RS03520 IPR003416 MgtC/SapB/SrpB/YhiD family RD04_RS03525 IPR005225 Small GTP-binding protein domain RD04_RS03525 IPR000640 Elongation factor EFG, domain V-like RD04_RS03525 IPR035649 EFG, domain V RD04_RS03525 IPR035647 EF-G domain III/V-like RD04_RS03525 IPR009022 Elongation factor G, domain III RD04_RS03525 IPR041095 Elongation Factor G, domain II RD04_RS03525 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS03525 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS03525 IPR005517 Translation elongation factor EFG/EF2, domain IV RD04_RS03525 IPR004161 Translation elongation factor EFTu-like, domain 2 RD04_RS03525 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS03525 IPR000795 Transcription factor, GTP-binding domain RD04_RS03525 IPR004540 Translation elongation factor EFG/EF2 RD04_RS03525 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS03530 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03530 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS03530 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS03530 IPR000524 Transcription regulator HTH, GntR RD04_RS03530 IPR004839 Aminotransferase, class I/classII RD04_RS03530 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03530 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS03540 IPR006016 UspA RD04_RS03540 IPR006015 Universal stress protein A family RD04_RS03545 IPR035647 EF-G domain III/V-like RD04_RS03545 IPR009022 Elongation factor G, domain III RD04_RS03545 IPR035649 EFG, domain V RD04_RS03545 IPR041095 Elongation Factor G, domain II RD04_RS03545 IPR005517 Translation elongation factor EFG/EF2, domain IV RD04_RS03545 IPR004540 Translation elongation factor EFG/EF2 RD04_RS03545 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS03545 IPR000795 Transcription factor, GTP-binding domain RD04_RS03545 IPR005225 Small GTP-binding protein domain RD04_RS03545 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS03545 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS03545 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS03545 IPR031157 Tr-type G domain, conserved site RD04_RS03545 IPR004161 Translation elongation factor EFTu-like, domain 2 RD04_RS03545 IPR000640 Elongation factor EFG, domain V-like RD04_RS03555 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD04_RS03555 IPR001036 Acriflavin resistance protein RD04_RS03560 IPR013520 Exonuclease, RNase T/DNA polymerase III RD04_RS03560 IPR006309 DNA polymerase 3, epsilon subunit RD04_RS03560 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain RD04_RS03560 IPR012337 Ribonuclease H-like superfamily RD04_RS03560 IPR036397 Ribonuclease H superfamily RD04_RS03575 IPR006161 Conserved hypothetical protein CHP00336 RD04_RS03575 IPR006160 Short chain fatty acid transporter AtoE RD04_RS03585 IPR004445 Sodium/glutamate symport carrier protein GltS RD04_RS03600 IPR001173 Glycosyltransferase 2-like RD04_RS03600 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS03605 IPR038731 Glycosyltransferase RgtA/B/C/D-like RD04_RS03620 IPR022742 Serine aminopeptidase, S33 RD04_RS03620 IPR029058 Alpha/Beta hydrolase fold RD04_RS03625 IPR001123 Amino acid exporter protein, LeuE-type RD04_RS03630 IPR000620 EamA domain RD04_RS03640 IPR042100 Bordetella uptake gene, domain 1 RD04_RS03640 IPR005064 Bordetella uptake gene RD04_RS03650 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS03650 IPR042100 Bordetella uptake gene, domain 1 RD04_RS03650 IPR005064 Bordetella uptake gene RD04_RS03660 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03660 IPR000847 Transcription regulator HTH, LysR RD04_RS03660 IPR037415 Octopine catabolism/uptake operon regulatory protein OccR, PBP2 domain RD04_RS03660 IPR005119 LysR, substrate-binding RD04_RS03660 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03665 IPR039368 Acetolactate synthase large subunit, TPP binding domain RD04_RS03665 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RD04_RS03665 IPR000399 TPP-binding enzyme, conserved site RD04_RS03665 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RD04_RS03665 IPR012000 Thiamine pyrophosphate enzyme, central domain RD04_RS03665 IPR029061 Thiamin diphosphate-binding fold RD04_RS03665 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS03665 IPR012846 Acetolactate synthase, large subunit, biosynthetic RD04_RS03670 IPR003673 CoA-transferase family III RD04_RS03670 IPR023606 CoA-transferase family III domain superfamily RD04_RS03675 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RD04_RS03675 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RD04_RS03675 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site RD04_RS03675 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS03675 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS03675 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS03675 IPR012799 Fatty oxidation complex, alpha subunit FadB RD04_RS03675 IPR036291 NAD(P)-binding domain superfamily RD04_RS03675 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS03680 IPR042100 Bordetella uptake gene, domain 1 RD04_RS03680 IPR005064 Bordetella uptake gene RD04_RS03690 IPR005982 Thioredoxin reductase RD04_RS03690 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site RD04_RS03690 IPR023753 FAD/NAD(P)-binding domain RD04_RS03690 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS03695 IPR014757 Transcription regulator IclR, C-terminal RD04_RS03695 IPR005471 Transcription regulator IclR, N-terminal RD04_RS03695 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03695 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03695 IPR029016 GAF-like domain superfamily RD04_RS03715 IPR023606 CoA-transferase family III domain superfamily RD04_RS03715 IPR003673 CoA-transferase family III RD04_RS03720 IPR042100 Bordetella uptake gene, domain 1 RD04_RS03720 IPR005064 Bordetella uptake gene RD04_RS03725 IPR017659 Formyl-CoA:oxalate CoA-transferase RD04_RS03725 IPR003673 CoA-transferase family III RD04_RS03725 IPR023606 CoA-transferase family III domain superfamily RD04_RS03745 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain RD04_RS03745 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain RD04_RS03745 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03745 IPR023546 Methylated-DNA--protein-cysteine methyltransferase RD04_RS03745 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily RD04_RS03745 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site RD04_RS03745 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding RD04_RS03750 IPR000878 Tetrapyrrole methylase RD04_RS03750 IPR008189 rRNA small subunit methyltransferase I RD04_RS03750 IPR014776 Tetrapyrrole methylase, subdomain 2 RD04_RS03750 IPR014777 Tetrapyrrole methylase, subdomain 1 RD04_RS03750 IPR035996 Tetrapyrrole methylase superfamily RD04_RS03750 IPR018063 SAM-dependent methyltransferase RsmI, conserved site RD04_RS03755 IPR011335 Restriction endonuclease type II-like RD04_RS03755 IPR011856 tRNA endonuclease-like domain superfamily RD04_RS03755 IPR003509 Uncharacterised protein family UPF0102 RD04_RS03760 IPR004515 Phosphoheptose isomerase RD04_RS03760 IPR035461 GmhA/DiaA RD04_RS03760 IPR001347 Sugar isomerase (SIS) RD04_RS03765 IPR014004 Transport-associated and nodulation domain, bacteria RD04_RS03765 IPR007055 BON domain RD04_RS03770 IPR036249 Thioredoxin-like superfamily RD04_RS03770 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RD04_RS03770 IPR013766 Thioredoxin domain RD04_RS03770 IPR023555 Thiol-disulphide oxidoreductase ResA RD04_RS03775 IPR004872 Lipoprotein NlpA family RD04_RS03780 IPR041727 N-Acetyl-L-glutamate kinase, cyclic RD04_RS03780 IPR001057 Glutamate/acetylglutamate kinase RD04_RS03780 IPR001048 Aspartate/glutamate/uridylate kinase RD04_RS03780 IPR037528 Acetylglutamate kinase ArgB RD04_RS03780 IPR004662 Acetylglutamate kinase family RD04_RS03780 IPR036393 Acetylglutamate kinase-like superfamily RD04_RS03790 IPR023769 Nucleoid occlusion factor SlmA RD04_RS03790 IPR009057 Homeobox-like domain superfamily RD04_RS03790 IPR001647 DNA-binding HTH domain, TetR-type RD04_RS03790 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RD04_RS03795 IPR030676 Citrate carrier CitT-related RD04_RS03795 IPR001898 Solute carrier family 13 RD04_RS03800 IPR003767 Malate/L-lactate dehydrogenase-like RD04_RS03800 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily RD04_RS03805 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site RD04_RS03805 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA RD04_RS03805 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB RD04_RS03810 IPR017790 Penicillin-binding protein 2 RD04_RS03810 IPR005311 Penicillin-binding protein, dimerisation domain RD04_RS03810 IPR001460 Penicillin-binding protein, transpeptidase RD04_RS03810 IPR012338 Beta-lactamase/transpeptidase-like RD04_RS03810 IPR036138 Penicillin-binding protein, dimerisation domain superfamily RD04_RS03820 IPR007221 Rod shape-determining protein MreC RD04_RS03820 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 RD04_RS03820 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 RD04_RS03825 IPR004753 Cell shape determining protein MreB RD04_RS03830 IPR003837 Glu-tRNAGln amidotransferase C subunit RD04_RS03830 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C RD04_RS03835 IPR023631 Amidase signature domain RD04_RS03835 IPR020556 Amidase, conserved site RD04_RS03835 IPR000120 Amidase RD04_RS03835 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit RD04_RS03835 IPR036928 Amidase signature (AS) superfamily RD04_RS03840 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E RD04_RS03840 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic RD04_RS03840 IPR018027 Asn/Gln amidotransferase RD04_RS03840 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like RD04_RS03840 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 RD04_RS03840 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit RD04_RS03840 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 RD04_RS03840 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site RD04_RS03840 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain RD04_RS03845 IPR000836 Phosphoribosyltransferase domain RD04_RS03845 IPR004467 Orotate phosphoribosyl transferase domain RD04_RS03845 IPR023031 Orotate phosphoribosyltransferase RD04_RS03845 IPR029057 Phosphoribosyltransferase-like RD04_RS03850 IPR005135 Endonuclease/exonuclease/phosphatase RD04_RS03850 IPR020848 AP endonuclease 1, conserved site RD04_RS03850 IPR020847 AP endonuclease 1, binding site RD04_RS03850 IPR004808 AP endonuclease 1 RD04_RS03850 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RD04_RS03855 IPR033922 NAD(P) binding domain of glutamate dehydrogenase RD04_RS03855 IPR014362 Glutamate dehydrogenase RD04_RS03855 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain RD04_RS03855 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal RD04_RS03855 IPR033524 Leu/Phe/Val dehydrogenases active site RD04_RS03855 IPR036291 NAD(P)-binding domain superfamily RD04_RS03855 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase RD04_RS03860 IPR005115 Uncharacterised domain UPF0126 RD04_RS03885 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain RD04_RS03885 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RD04_RS03885 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS03885 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS03885 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS03885 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS03885 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS03885 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase RD04_RS03885 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS03885 IPR012675 Beta-grasp domain superfamily RD04_RS03895 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS03895 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS03895 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS03895 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS03895 IPR015590 Aldehyde dehydrogenase domain RD04_RS03895 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS03915 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS03915 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03915 IPR000524 Transcription regulator HTH, GntR RD04_RS03915 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS03915 IPR011711 GntR, C-terminal RD04_RS03915 IPR000485 AsnC-type HTH domain RD04_RS03925 IPR023401 Ornithine cyclodeaminase, N-terminal RD04_RS03925 IPR036291 NAD(P)-binding domain superfamily RD04_RS03925 IPR003462 Ornithine cyclodeaminase/mu-crystallin RD04_RS03950 IPR013325 RNA polymerase sigma factor, region 2 RD04_RS03950 IPR007627 RNA polymerase sigma-70 region 2 RD04_RS03950 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 RD04_RS03950 IPR013324 RNA polymerase sigma factor, region 3/4-like RD04_RS03950 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS03950 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site RD04_RS03950 IPR014284 RNA polymerase sigma-70 like domain RD04_RS03950 IPR039425 RNA polymerase sigma-70 like RD04_RS03955 IPR006860 FecR protein RD04_RS03955 IPR032623 FecR, N-terminal RD04_RS03955 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RD04_RS03960 IPR039426 Vitamin B12 transporter BtuB-like RD04_RS03960 IPR006970 PT repeat RD04_RS03960 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS03960 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor RD04_RS03960 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS03960 IPR010917 TonB-dependent receptor, conserved site RD04_RS03960 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS03960 IPR012910 TonB-dependent receptor, plug domain RD04_RS03965 IPR007845 Haemin-degrading HemS/ChuX domain RD04_RS03970 IPR002491 ABC transporter periplasmic binding domain RD04_RS03975 IPR037294 ABC transporter, BtuC-like RD04_RS03975 IPR000522 ABC transporter, permease protein, BtuC-like RD04_RS03980 IPR017871 ABC transporter, conserved site RD04_RS03980 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS03980 IPR015863 ABC transporter, hemin import, HmuV RD04_RS03980 IPR003439 ABC transporter-like RD04_RS03980 IPR003593 AAA+ ATPase domain RD04_RS03985 IPR007553 Domain of unknown function DUF523 RD04_RS03990 IPR018655 Protein of unknown function DUF2086 RD04_RS03995 IPR004574 Alkylated DNA repair protein AlkB RD04_RS03995 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like RD04_RS03995 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily RD04_RS03995 IPR005123 Oxoglutarate/iron-dependent dioxygenase RD04_RS04000 IPR023546 Methylated-DNA--protein-cysteine methyltransferase RD04_RS04000 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily RD04_RS04000 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS04000 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain RD04_RS04000 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain RD04_RS04000 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site RD04_RS04000 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding RD04_RS04005 IPR001633 EAL domain RD04_RS04005 IPR029787 Nucleotide cyclase RD04_RS04005 IPR035919 EAL domain superfamily RD04_RS04005 IPR000160 GGDEF domain RD04_RS04005 IPR005330 MHYT domain RD04_RS04030 IPR005064 Bordetella uptake gene RD04_RS04030 IPR042100 Bordetella uptake gene, domain 1 RD04_RS04035 IPR013471 Ribonuclease Z/BN RD04_RS04035 IPR001279 Metallo-beta-lactamase RD04_RS04035 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RD04_RS04050 IPR042100 Bordetella uptake gene, domain 1 RD04_RS04050 IPR005064 Bordetella uptake gene RD04_RS04055 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS04055 IPR000873 AMP-dependent synthetase/ligase RD04_RS04055 IPR020845 AMP-binding, conserved site RD04_RS04055 IPR023456 Crotonobetaine/carnitine-CoA ligase CaiC RD04_RS04055 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS04070 IPR001264 Glycosyl transferase, family 51 RD04_RS04070 IPR023346 Lysozyme-like domain superfamily RD04_RS04070 IPR036950 Penicillin binding protein transglycosylase domain RD04_RS04070 IPR011812 Biosynthetic peptidoglycan transglycosylase RD04_RS04080 IPR029052 Metallo-dependent phosphatase-like RD04_RS04080 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) RD04_RS04080 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type RD04_RS04085 IPR002123 Phospholipid/glycerol acyltransferase RD04_RS04085 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase RD04_RS04090 IPR004722 Dihydroorotase RD04_RS04090 IPR006680 Amidohydrolase-related RD04_RS04090 IPR011059 Metal-dependent hydrolase, composite domain superfamily RD04_RS04090 IPR032466 Metal-dependent hydrolase RD04_RS04095 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily RD04_RS04095 IPR002082 Aspartate carbamoyltransferase RD04_RS04095 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain RD04_RS04095 IPR006130 Aspartate/ornithine carbamoyltransferase RD04_RS04095 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding RD04_RS04100 IPR006641 YqgF/RNase H-like domain RD04_RS04100 IPR037027 YqgF/RNase H-like domain superfamily RD04_RS04100 IPR012337 Ribonuclease H-like superfamily RD04_RS04100 IPR005227 Putative pre-16S rRNA nuclease RD04_RS04105 IPR003774 Protein of unknown function UPF0301 RD04_RS04110 IPR024935 Rubredoxin domain RD04_RS04110 IPR024922 Rubredoxin RD04_RS04110 IPR024934 Rubredoxin-like domain RD04_RS04110 IPR018527 Rubredoxin, iron-binding site RD04_RS04115 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase RD04_RS04115 IPR029056 Ribokinase-like RD04_RS04115 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase RD04_RS04120 IPR022998 Thiamine phosphate synthase/TenI RD04_RS04120 IPR036206 Thiamin phosphate synthase superfamily RD04_RS04120 IPR013785 Aldolase-type TIM barrel RD04_RS04120 IPR034291 Thiamine phosphate synthase RD04_RS04125 IPR005814 Aminotransferase class-III RD04_RS04125 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase RD04_RS04125 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS04125 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS04125 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS04145 IPR011957 Benzoate-CoA ligase family RD04_RS04145 IPR000873 AMP-dependent synthetase/ligase RD04_RS04145 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS04150 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS04150 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS04150 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS04150 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS04150 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS04150 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS04150 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS04155 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS04155 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS04155 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB RD04_RS04155 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS04170 IPR003593 AAA+ ATPase domain RD04_RS04170 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS04170 IPR003439 ABC transporter-like RD04_RS04170 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS04170 IPR017871 ABC transporter, conserved site RD04_RS04175 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS04175 IPR017871 ABC transporter, conserved site RD04_RS04175 IPR003439 ABC transporter-like RD04_RS04175 IPR003593 AAA+ ATPase domain RD04_RS04175 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS04180 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal RD04_RS04180 IPR001851 ABC transporter, permease RD04_RS04185 IPR001851 ABC transporter, permease RD04_RS04195 IPR029058 Alpha/Beta hydrolase fold RD04_RS04195 IPR013094 Alpha/beta hydrolase fold-3 RD04_RS04225 IPR010708 5'(3')-deoxyribonucleotidase RD04_RS04225 IPR036412 HAD-like superfamily RD04_RS04225 IPR023214 HAD superfamily RD04_RS04235 IPR000847 Transcription regulator HTH, LysR RD04_RS04235 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS04235 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS04235 IPR005119 LysR, substrate-binding RD04_RS04240 IPR036259 MFS transporter superfamily RD04_RS04240 IPR020846 Major facilitator superfamily domain RD04_RS04240 IPR011701 Major facilitator superfamily RD04_RS04245 IPR004404 Dihydroxy-acid dehydratase RD04_RS04245 IPR042096 Dihydroxy-acid dehydratase, C-terminal RD04_RS04245 IPR037237 IlvD/EDD, N-terminal domain RD04_RS04245 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site RD04_RS04245 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase RD04_RS04250 IPR009057 Homeobox-like domain superfamily RD04_RS04250 IPR018060 DNA binding HTH domain, AraC-type RD04_RS04250 IPR018062 HTH domain AraC-type, conserved site RD04_RS04255 IPR013785 Aldolase-type TIM barrel RD04_RS04255 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain RD04_RS04255 IPR039371 LeuA, N-terminal catalytic TIM barrel domain RD04_RS04255 IPR000891 Pyruvate carboxyltransferase RD04_RS04255 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site RD04_RS04255 IPR005668 2-isopropylmalate synthase RD04_RS04255 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily RD04_RS04265 IPR029058 Alpha/Beta hydrolase fold RD04_RS04265 IPR033140 Lipase, GDXG, putative serine active site RD04_RS04265 IPR002168 Lipase, GDXG, putative histidine active site RD04_RS04265 IPR023508 Acetyl esterase RD04_RS04265 IPR013094 Alpha/beta hydrolase fold-3 RD04_RS04270 IPR000914 Solute-binding protein family 5 domain RD04_RS04270 IPR039424 Solute-binding protein family 5 RD04_RS04270 IPR023765 Solute-binding protein family 5, conserved site RD04_RS04270 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS04275 IPR036291 NAD(P)-binding domain superfamily RD04_RS04275 IPR023514 Glyoxylate/hydroxypyruvate reductase A RD04_RS04275 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RD04_RS04275 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RD04_RS04280 IPR012349 FMN-binding split barrel RD04_RS04280 IPR007396 Transcriptional regulator PAI 2-type RD04_RS04290 IPR001478 PDZ domain RD04_RS04290 IPR011782 Peptidase S1C, Do RD04_RS04290 IPR009003 Peptidase S1, PA clan RD04_RS04290 IPR001940 Peptidase S1C RD04_RS04290 IPR036034 PDZ superfamily RD04_RS04295 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily RD04_RS04295 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RD04_RS04300 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L RD04_RS04300 IPR036019 Gated mechanosensitive channel RD04_RS04300 IPR001185 Large-conductance mechanosensitive channel RD04_RS04305 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit RD04_RS04305 IPR017941 Rieske [2Fe-2S] iron-sulphur domain RD04_RS04305 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily RD04_RS04305 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal RD04_RS04305 IPR014349 Rieske iron-sulphur protein RD04_RS04305 IPR005805 Rieske iron-sulphur protein, C-terminal RD04_RS04310 IPR036150 Cytochrome b/b6, C-terminal domain superfamily RD04_RS04310 IPR005797 Cytochrome b/b6, N-terminal RD04_RS04310 IPR027387 Cytochrome b/b6-like domain superfamily RD04_RS04310 IPR016174 Di-haem cytochrome, transmembrane RD04_RS04310 IPR030689 Cytochrome b RD04_RS04310 IPR005798 Cytochrome b/b6, C-terminal RD04_RS04320 IPR002326 Cytochrome c1 RD04_RS04320 IPR009056 Cytochrome c-like domain RD04_RS04320 IPR036909 Cytochrome c-like domain superfamily RD04_RS04325 IPR034341 Stringent starvation protein A, N-terminal RD04_RS04325 IPR040079 Glutathione Transferase family RD04_RS04325 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RD04_RS04325 IPR036249 Thioredoxin-like superfamily RD04_RS04325 IPR010987 Glutathione S-transferase, C-terminal-like RD04_RS04325 IPR004046 Glutathione S-transferase, C-terminal RD04_RS04325 IPR004045 Glutathione S-transferase, N-terminal RD04_RS04330 IPR007481 Stringent starvation protein B RD04_RS04330 IPR036760 SspB-like superfamily RD04_RS04355 IPR033900 Porin domain, Gram-negative type RD04_RS04355 IPR002299 Porin, Neisseria sp. type RD04_RS04355 IPR001702 Porin, Gram-negative type RD04_RS04355 IPR023614 Porin domain superfamily RD04_RS04370 IPR000836 Phosphoribosyltransferase domain RD04_RS04370 IPR005764 Adenine phosphoribosyl transferase RD04_RS04370 IPR029057 Phosphoribosyltransferase-like RD04_RS04380 IPR011527 ABC transporter type 1, transmembrane domain RD04_RS04380 IPR017871 ABC transporter, conserved site RD04_RS04380 IPR003593 AAA+ ATPase domain RD04_RS04380 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC RD04_RS04380 IPR036640 ABC transporter type 1, transmembrane domain superfamily RD04_RS04380 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS04380 IPR003439 ABC transporter-like RD04_RS04385 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS04385 IPR039421 Type I protein exporter RD04_RS04385 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD RD04_RS04385 IPR017871 ABC transporter, conserved site RD04_RS04385 IPR003439 ABC transporter-like RD04_RS04385 IPR003593 AAA+ ATPase domain RD04_RS04385 IPR011527 ABC transporter type 1, transmembrane domain RD04_RS04385 IPR036640 ABC transporter type 1, transmembrane domain superfamily RD04_RS04390 IPR011724 Cyd operon protein YbgT RD04_RS04390 IPR012994 Membrane bound YbgT-like RD04_RS04395 IPR003317 Cytochrome ubiquinol oxidase subunit 2 RD04_RS04400 IPR002585 Cytochrome ubiquinol oxidase subunit 1 RD04_RS04420 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS04420 IPR041504 Adaptive response protein AidB, N-terminal RD04_RS04420 IPR034184 Putative acyl-CoA dehydrogenase AidB RD04_RS04420 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS04420 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS04420 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS04420 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS04425 IPR042100 Bordetella uptake gene, domain 1 RD04_RS04425 IPR005064 Bordetella uptake gene RD04_RS04430 IPR023606 CoA-transferase family III domain superfamily RD04_RS04430 IPR003673 CoA-transferase family III RD04_RS04440 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS04440 IPR000847 Transcription regulator HTH, LysR RD04_RS04440 IPR037405 HTH-type transcriptional regulator GbpR, PBP2 domain RD04_RS04440 IPR005119 LysR, substrate-binding RD04_RS04440 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS04445 IPR005064 Bordetella uptake gene RD04_RS04445 IPR042100 Bordetella uptake gene, domain 1 RD04_RS04455 IPR008948 L-Aspartase-like RD04_RS04455 IPR018951 Fumarase C, C-terminal RD04_RS04455 IPR024083 Fumarase/histidase, N-terminal RD04_RS04455 IPR000362 Fumarate lyase family RD04_RS04455 IPR022761 Fumarate lyase, N-terminal RD04_RS04455 IPR020557 Fumarate lyase, conserved site RD04_RS04455 IPR005677 Fumarate hydratase, class II RD04_RS04460 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE RD04_RS04460 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS04465 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS04465 IPR021731 AMIN domain RD04_RS04465 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain RD04_RS04470 IPR032818 DedA family RD04_RS04470 IPR032816 SNARE associated Golgi protein RD04_RS04475 IPR042121 MutL, C-terminal domain, regulatory subdomain RD04_RS04475 IPR037198 MutL, C-terminal domain superfamily RD04_RS04475 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS04475 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS04475 IPR013507 DNA mismatch repair protein, S5 domain 2-like RD04_RS04475 IPR002099 DNA mismatch repair protein family, N-terminal RD04_RS04475 IPR020667 DNA mismatch repair protein, MutL RD04_RS04475 IPR042120 MutL, C-terminal domain, dimerisation subdomain RD04_RS04475 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS04475 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms RD04_RS04475 IPR014762 DNA mismatch repair, conserved site RD04_RS04475 IPR014790 MutL, C-terminal, dimerisation RD04_RS04480 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS04480 IPR018022 IPP transferase RD04_RS04480 IPR039657 Dimethylallyltransferase RD04_RS04485 IPR036921 PurM-like, N-terminal domain superfamily RD04_RS04485 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase RD04_RS04485 IPR016188 PurM-like, N-terminal domain RD04_RS04485 IPR010918 PurM-like, C-terminal domain RD04_RS04485 IPR036676 PurM-like, C-terminal domain superfamily RD04_RS04490 IPR020591 Chromosomal replication control, initiator DnaA-like RD04_RS04490 IPR013317 Chromosomal replication initiator protein DnaA RD04_RS04490 IPR017788 DnaA regulatory inactivator Hda RD04_RS04490 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae RD04_RS04490 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS04495 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like RD04_RS04495 IPR023214 HAD superfamily RD04_RS04495 IPR036412 HAD-like superfamily RD04_RS04500 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain RD04_RS04500 IPR025866 Polymerase A arginine-rich C-terminal domain RD04_RS04500 IPR010206 Poly(A) polymerase I RD04_RS04500 IPR002646 Poly A polymerase, head domain RD04_RS04505 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK RD04_RS04505 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily RD04_RS04510 IPR005064 Bordetella uptake gene RD04_RS04510 IPR042100 Bordetella uptake gene, domain 1 RD04_RS04520 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD04_RS04520 IPR004681 TRAP transporter large membrane protein DctM RD04_RS04525 IPR041721 Lactate-binding periplasmic protein TTHA0766 RD04_RS04525 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS04525 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS04525 IPR026289 Solute binding protein, TakP-like RD04_RS04525 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS04530 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS04530 IPR000524 Transcription regulator HTH, GntR RD04_RS04530 IPR011663 UbiC transcription regulator-associated RD04_RS04530 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RD04_RS04530 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS04535 IPR015815 3-hydroxyisobutyrate dehydrogenase-related RD04_RS04535 IPR036291 NAD(P)-binding domain superfamily RD04_RS04535 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding RD04_RS04535 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain RD04_RS04535 IPR030876 3-sulfolactaldehyde reductase RD04_RS04535 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site RD04_RS04535 IPR013328 6-phosphogluconate dehydrogenase, domain 2 RD04_RS04535 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS04540 IPR012788 4-carboxymuconolactone decarboxylase RD04_RS04540 IPR029032 AhpD-like RD04_RS04540 IPR003779 Carboxymuconolactone decarboxylase-like RD04_RS04550 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS04550 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS04550 IPR011294 3-hydroxybutyrate dehydrogenase RD04_RS04550 IPR036291 NAD(P)-binding domain superfamily RD04_RS04570 IPR038373 Restriction endonuclease, type II, HindIII superfamily RD04_RS04570 IPR019043 Restriction endonuclease, type II, HindIII RD04_RS04575 IPR005791 Protein translocase subunit SecD RD04_RS04575 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RD04_RS04575 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RD04_RS04575 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RD04_RS04580 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B RD04_RS04580 IPR025747 ThiC-associated domain RD04_RS04580 IPR037509 Phosphomethylpyrimidine synthase RD04_RS04580 IPR038521 ThiC/Bza superfamily RD04_RS04585 IPR015590 Aldehyde dehydrogenase domain RD04_RS04585 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS04585 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS04585 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS04585 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS04585 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS04590 IPR006094 FAD linked oxidase, N-terminal RD04_RS04590 IPR016166 FAD-binding domain, PCMH-type RD04_RS04590 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RD04_RS04590 IPR016164 FAD-linked oxidase-like, C-terminal RD04_RS04590 IPR004113 FAD-linked oxidase, C-terminal RD04_RS04590 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS04605 IPR011217 Streptogramin lyase RD04_RS04605 IPR011042 Six-bladed beta-propeller, TolB-like RD04_RS04605 IPR015943 WD40/YVTN repeat-like-containing domain superfamily RD04_RS04610 IPR000182 GNAT domain RD04_RS04610 IPR016181 Acyl-CoA N-acyltransferase RD04_RS04615 IPR018317 Queuosine biosynthesis protein QueC RD04_RS04615 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS04620 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site RD04_RS04620 IPR033129 Phosphoenolpyruvate carboxylase, His active site RD04_RS04620 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS04620 IPR021135 Phosphoenolpyruvate carboxylase RD04_RS04620 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type RD04_RS04625 IPR036852 Peptidase S8/S53 domain superfamily RD04_RS04625 IPR015500 Peptidase S8, subtilisin-related RD04_RS04625 IPR036709 Autotransporter beta-domain superfamily RD04_RS04625 IPR034061 Autotransporter serine protease peptidase domain RD04_RS04625 IPR000209 Peptidase S8/S53 domain RD04_RS04625 IPR023828 Peptidase S8, subtilisin, Ser-active site RD04_RS04625 IPR005546 Autotransporter beta-domain RD04_RS04630 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RD04_RS04630 IPR013328 6-phosphogluconate dehydrogenase, domain 2 RD04_RS04630 IPR036291 NAD(P)-binding domain superfamily RD04_RS04630 IPR022694 3-hydroxyacyl-CoA dehydrogenase RD04_RS04630 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site RD04_RS04630 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RD04_RS04630 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site RD04_RS04630 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS04635 IPR006161 Conserved hypothetical protein CHP00336 RD04_RS04635 IPR006160 Short chain fatty acid transporter AtoE RD04_RS04640 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS04640 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS04640 IPR011283 Acetoacetyl-CoA reductase RD04_RS04640 IPR036291 NAD(P)-binding domain superfamily RD04_RS04645 IPR029016 GAF-like domain superfamily RD04_RS04645 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS04645 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR RD04_RS04645 IPR005471 Transcription regulator IclR, N-terminal RD04_RS04645 IPR014757 Transcription regulator IclR, C-terminal RD04_RS04645 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS04650 IPR004165 Coenzyme A transferase family I RD04_RS04650 IPR012792 3-oxoacid CoA-transferase, subunit A RD04_RS04650 IPR037171 NagB/RpiA transferase-like RD04_RS04650 IPR004163 Coenzyme A transferase binding site RD04_RS04655 IPR004164 Coenzyme A transferase active site RD04_RS04655 IPR012791 3-oxoacid CoA-transferase, subunit B RD04_RS04655 IPR004165 Coenzyme A transferase family I RD04_RS04655 IPR037171 NagB/RpiA transferase-like RD04_RS04660 IPR003464 Muconolactone delta-isomerase RD04_RS04660 IPR026029 Muconolactone isomerase domain RD04_RS04660 IPR011008 Dimeric alpha-beta barrel RD04_RS04670 IPR026968 3-oxoadipate enol-lactonase 1/2 RD04_RS04670 IPR022742 Serine aminopeptidase, S33 RD04_RS04670 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS04670 IPR029058 Alpha/Beta hydrolase fold RD04_RS04690 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS04690 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS04690 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS04700 IPR003673 CoA-transferase family III RD04_RS04700 IPR023606 CoA-transferase family III domain superfamily RD04_RS04705 IPR000524 Transcription regulator HTH, GntR RD04_RS04705 IPR011711 GntR, C-terminal RD04_RS04705 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS04705 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS04705 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS04710 IPR020581 Glycine cleavage system P protein RD04_RS04710 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS04710 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS04710 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS04710 IPR003437 Glycine dehydrogenase (decarboxylating) RD04_RS04715 IPR011053 Single hybrid motif RD04_RS04715 IPR033753 Glycine cleavage system H-protein/Simiate RD04_RS04715 IPR017453 Glycine cleavage system H-protein, subgroup RD04_RS04715 IPR002930 Glycine cleavage system H-protein RD04_RS04715 IPR000089 Biotin/lipoyl attachment RD04_RS04715 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RD04_RS04720 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RD04_RS04720 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 RD04_RS04720 IPR006223 Glycine cleavage system T protein RD04_RS04720 IPR022903 Glycine cleavage system T protein, bacteria RD04_RS04720 IPR028896 Aminomethyltransferase-like RD04_RS04720 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain RD04_RS04720 IPR006222 Aminomethyltransferase, folate-binding domain RD04_RS04725 IPR003689 Zinc/iron permease RD04_RS04730 IPR019832 Manganese/iron superoxide dismutase, C-terminal RD04_RS04730 IPR019831 Manganese/iron superoxide dismutase, N-terminal RD04_RS04730 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily RD04_RS04730 IPR001189 Manganese/iron superoxide dismutase RD04_RS04730 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily RD04_RS04730 IPR019833 Manganese/iron superoxide dismutase, binding site RD04_RS04760 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS04760 IPR005119 LysR, substrate-binding RD04_RS04760 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS04760 IPR000847 Transcription regulator HTH, LysR RD04_RS04765 IPR029055 Nucleophile aminohydrolases, N-terminal RD04_RS04770 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS04770 IPR039424 Solute-binding protein family 5 RD04_RS04770 IPR000914 Solute-binding protein family 5 domain RD04_RS04770 IPR023765 Solute-binding protein family 5, conserved site RD04_RS04775 IPR035906 MetI-like superfamily RD04_RS04775 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS04780 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS04780 IPR035906 MetI-like superfamily RD04_RS04780 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD04_RS04785 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal RD04_RS04785 IPR010914 RsgA GTPase domain RD04_RS04785 IPR004881 Ribosome biogenesis GTPase RsgA RD04_RS04785 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS04785 IPR012340 Nucleic acid-binding, OB-fold RD04_RS04785 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain RD04_RS04790 IPR001915 Peptidase M48 RD04_RS04790 IPR022919 Peptidase M48, protease HtpX, putative RD04_RS04795 IPR012337 Ribonuclease H-like superfamily RD04_RS04795 IPR013520 Exonuclease, RNase T/DNA polymerase III RD04_RS04795 IPR036397 Ribonuclease H superfamily RD04_RS04795 IPR022894 Oligoribonuclease RD04_RS04800 IPR004443 YjeF N-terminal domain RD04_RS04800 IPR036652 YjeF N-terminal domain superfamily RD04_RS04805 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX RD04_RS04805 IPR013225 PaaX-like, C-terminal RD04_RS04805 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS04805 IPR012906 PaaX-like, N-terminal RD04_RS04810 IPR012347 Ferritin-like RD04_RS04810 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A RD04_RS04810 IPR009078 Ferritin-like superfamily RD04_RS04810 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C RD04_RS04815 IPR038693 Phenylacetyl-CoA epoxidase, subunit B RD04_RS04815 IPR009359 Phenylacetic acid degradation B RD04_RS04820 IPR009078 Ferritin-like superfamily RD04_RS04820 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C RD04_RS04820 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C RD04_RS04820 IPR012347 Ferritin-like RD04_RS04825 IPR034904 Fe-S cluster assembly domain superfamily RD04_RS04825 IPR002744 MIP18 family-like RD04_RS04825 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit RD04_RS04830 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit RD04_RS04830 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS04830 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS04830 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS04830 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS04830 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase RD04_RS04830 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RD04_RS04830 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain RD04_RS04830 IPR012675 Beta-grasp domain superfamily RD04_RS04830 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS04830 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS04840 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS04840 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS04840 IPR015590 Aldehyde dehydrogenase domain RD04_RS04840 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS04840 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS04845 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS04845 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS04845 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB RD04_RS04845 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS04850 IPR029069 HotDog domain superfamily RD04_RS04850 IPR006683 Thioesterase domain RD04_RS04850 IPR003736 Phenylacetic acid degradation-related domain RD04_RS04850 IPR011973 Phenylacetic acid degradation protein PaaD RD04_RS04855 IPR000873 AMP-dependent synthetase/ligase RD04_RS04855 IPR028154 AMP-dependent ligase, C-terminal RD04_RS04855 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS04855 IPR011880 Phenylacetate-CoA ligase RD04_RS04860 IPR039458 FimA-like RD04_RS04860 IPR008966 Adhesion domain superfamily RD04_RS04860 IPR036937 Fimbrial-type adhesion domain superfamily RD04_RS04875 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS04875 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS04875 IPR004682 TRAP transporter solute receptor, DctP family RD04_RS04880 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD04_RS04880 IPR004681 TRAP transporter large membrane protein DctM RD04_RS04880 IPR007387 TRAP transporter, small membrane protein DctQ RD04_RS04885 IPR007387 TRAP transporter, small membrane protein DctQ RD04_RS04890 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal RD04_RS04890 IPR010073 Phosphoribosylformylglycinamidine synthase PurL RD04_RS04890 IPR036676 PurM-like, C-terminal domain superfamily RD04_RS04890 IPR036921 PurM-like, N-terminal domain superfamily RD04_RS04890 IPR010918 PurM-like, C-terminal domain RD04_RS04890 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain RD04_RS04890 IPR017926 Glutamine amidotransferase RD04_RS04890 IPR029062 Class I glutamine amidotransferase-like RD04_RS04890 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily RD04_RS04920 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RD04_RS04920 IPR001303 Class II aldolase/adducin N-terminal RD04_RS04925 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS04925 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS04925 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS04925 IPR026289 Solute binding protein, TakP-like RD04_RS04925 IPR041722 Alpha-keto acid binding periplasmic protein RD04_RS04930 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily RD04_RS04930 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family RD04_RS04935 IPR007197 Radical SAM RD04_RS04935 IPR013785 Aldolase-type TIM barrel RD04_RS04935 IPR030977 7-carboxy-7-deazaguanine synthase, Cx14CxxC-type RD04_RS04935 IPR024924 7-carboxy-7-deazaguanine synthase-like RD04_RS04940 IPR000352 Peptide chain release factor class I RD04_RS04960 IPR020625 Schiff base-forming aldolase, active site RD04_RS04960 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA RD04_RS04960 IPR013785 Aldolase-type TIM barrel RD04_RS04960 IPR002220 DapA-like RD04_RS04965 IPR005064 Bordetella uptake gene RD04_RS04965 IPR042100 Bordetella uptake gene, domain 1 RD04_RS04990 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily RD04_RS04990 IPR010960 Flavocytochrome c RD04_RS04990 IPR012286 Tetrahaem cytochrome domain RD04_RS04990 IPR011031 Multihaem cytochrome RD04_RS04990 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RD04_RS04990 IPR036280 Multiheme cytochrome superfamily RD04_RS04990 IPR013087 Zinc finger C2H2-type RD04_RS04990 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS04995 IPR042100 Bordetella uptake gene, domain 1 RD04_RS04995 IPR005064 Bordetella uptake gene RD04_RS05000 IPR036291 NAD(P)-binding domain superfamily RD04_RS05000 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS05000 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS05010 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase RD04_RS05010 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS05010 IPR006076 FAD dependent oxidoreductase RD04_RS05010 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily RD04_RS05010 IPR031656 Alpha-glycerophosphate oxidase, C-terminal RD04_RS05015 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05015 IPR014036 DeoR C-terminal sensor domain RD04_RS05015 IPR018356 Transcription regulator, HTH DeoR-type, conserved site RD04_RS05015 IPR001034 DeoR-type HTH domain RD04_RS05015 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05015 IPR037171 NagB/RpiA transferase-like RD04_RS05020 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05020 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS05020 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC RD04_RS05020 IPR040582 MalK, OB fold domain RD04_RS05020 IPR017871 ABC transporter, conserved site RD04_RS05020 IPR003439 ABC transporter-like RD04_RS05020 IPR003593 AAA+ ATPase domain RD04_RS05025 IPR003593 AAA+ ATPase domain RD04_RS05025 IPR003439 ABC transporter-like RD04_RS05025 IPR017871 ABC transporter, conserved site RD04_RS05025 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS05025 IPR040582 MalK, OB fold domain RD04_RS05025 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05025 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC RD04_RS05035 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS05035 IPR035906 MetI-like superfamily RD04_RS05060 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05060 IPR019888 Transcription regulator AsnC-type RD04_RS05060 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD04_RS05060 IPR011008 Dimeric alpha-beta barrel RD04_RS05060 IPR000485 AsnC-type HTH domain RD04_RS05060 IPR011991 ArsR-like helix-turn-helix domain RD04_RS05060 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05060 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD04_RS05065 IPR006076 FAD dependent oxidoreductase RD04_RS05065 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS05065 IPR023080 D-amino acid dehydrogenase DadA RD04_RS05070 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type RD04_RS05070 IPR029052 Metallo-dependent phosphatase-like RD04_RS05070 IPR026843 Nuclease SbcCD subunit D, C-terminal domain RD04_RS05070 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain RD04_RS05070 IPR004593 Nuclease SbcCD subunit D RD04_RS05095 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS05095 IPR000792 Transcription regulator LuxR, C-terminal RD04_RS05095 IPR001789 Signal transduction response regulator, receiver domain RD04_RS05095 IPR011006 CheY-like superfamily RD04_RS05115 IPR015875 IMP dehydrogenase / GMP reductase, conserved site RD04_RS05115 IPR001093 IMP dehydrogenase/GMP reductase RD04_RS05115 IPR005990 Inosine-5'-monophosphate dehydrogenase RD04_RS05115 IPR013785 Aldolase-type TIM barrel RD04_RS05115 IPR000644 CBS domain RD04_RS05120 IPR022955 GMP synthase RD04_RS05120 IPR025777 GMP synthetase ATP pyrophosphatase domain RD04_RS05120 IPR022310 NAD/GMP synthase RD04_RS05120 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS05120 IPR017926 Glutamine amidotransferase RD04_RS05120 IPR029062 Class I glutamine amidotransferase-like RD04_RS05120 IPR001674 GMP synthase, C-terminal RD04_RS05120 IPR004739 GMP synthase, glutamine amidotransferase RD04_RS05130 IPR017508 HipA, N-terminal subdomain 1 RD04_RS05130 IPR012893 HipA-like, C-terminal RD04_RS05140 IPR011701 Major facilitator superfamily RD04_RS05140 IPR020846 Major facilitator superfamily domain RD04_RS05140 IPR036259 MFS transporter superfamily RD04_RS05155 IPR006680 Amidohydrolase-related RD04_RS05155 IPR005920 Imidazolonepropionase RD04_RS05155 IPR032466 Metal-dependent hydrolase RD04_RS05155 IPR011059 Metal-dependent hydrolase, composite domain superfamily RD04_RS05165 IPR003593 AAA+ ATPase domain RD04_RS05165 IPR005890 Nitrate transport ATP-binding subunit C/D RD04_RS05165 IPR017871 ABC transporter, conserved site RD04_RS05165 IPR003439 ABC transporter-like RD04_RS05165 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05170 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS05170 IPR035906 MetI-like superfamily RD04_RS05185 IPR002818 DJ-1/PfpI RD04_RS05185 IPR029062 Class I glutamine amidotransferase-like RD04_RS05190 IPR002645 STAS domain RD04_RS05190 IPR001902 SLC26A/SulP transporter RD04_RS05190 IPR011547 SLC26A/SulP transporter domain RD04_RS05190 IPR036513 STAS domain superfamily RD04_RS05195 IPR022712 Beta-Casp domain RD04_RS05195 IPR001279 Metallo-beta-lactamase RD04_RS05195 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RD04_RS05195 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RD04_RS05210 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RD04_RS05210 IPR001279 Metallo-beta-lactamase RD04_RS05215 IPR018062 HTH domain AraC-type, conserved site RD04_RS05215 IPR018060 DNA binding HTH domain, AraC-type RD04_RS05215 IPR002818 DJ-1/PfpI RD04_RS05215 IPR029062 Class I glutamine amidotransferase-like RD04_RS05215 IPR009057 Homeobox-like domain superfamily RD04_RS05220 IPR037420 HTH-type transcriptional activator AmpR, PBP2 RD04_RS05220 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05220 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05220 IPR000847 Transcription regulator HTH, LysR RD04_RS05220 IPR005119 LysR, substrate-binding RD04_RS05235 IPR011032 GroES-like superfamily RD04_RS05235 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site RD04_RS05235 IPR020843 Polyketide synthase, enoylreductase domain RD04_RS05235 IPR013149 Alcohol dehydrogenase, C-terminal RD04_RS05235 IPR036291 NAD(P)-binding domain superfamily RD04_RS05235 IPR013154 Alcohol dehydrogenase, N-terminal RD04_RS05240 IPR011701 Major facilitator superfamily RD04_RS05240 IPR020846 Major facilitator superfamily domain RD04_RS05240 IPR036259 MFS transporter superfamily RD04_RS05245 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05245 IPR000524 Transcription regulator HTH, GntR RD04_RS05245 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS05245 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS05245 IPR004839 Aminotransferase, class I/classII RD04_RS05245 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05255 IPR004778 Homoserine/Threonine efflux protein RD04_RS05255 IPR001123 Amino acid exporter protein, LeuE-type RD04_RS05270 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site RD04_RS05270 IPR036264 Bacterial exopeptidase dimerisation domain RD04_RS05270 IPR002933 Peptidase M20 RD04_RS05270 IPR011650 Peptidase M20, dimerisation domain RD04_RS05270 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria RD04_RS05275 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS05275 IPR023765 Solute-binding protein family 5, conserved site RD04_RS05275 IPR000914 Solute-binding protein family 5 domain RD04_RS05275 IPR039424 Solute-binding protein family 5 RD04_RS05280 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS05280 IPR035906 MetI-like superfamily RD04_RS05285 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD04_RS05285 IPR035906 MetI-like superfamily RD04_RS05285 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS05290 IPR017871 ABC transporter, conserved site RD04_RS05290 IPR003439 ABC transporter-like RD04_RS05290 IPR003593 AAA+ ATPase domain RD04_RS05290 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS05290 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05295 IPR028082 Periplasmic binding protein-like I RD04_RS05295 IPR010982 Lambda repressor-like, DNA-binding domain superfamily RD04_RS05295 IPR000843 LacI-type HTH domain RD04_RS05320 IPR032818 DedA family RD04_RS05320 IPR032816 SNARE associated Golgi protein RD04_RS05330 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS05330 IPR025714 Methyltransferase domain RD04_RS05345 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS05345 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05345 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05345 IPR000524 Transcription regulator HTH, GntR RD04_RS05345 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS05345 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS05345 IPR004839 Aminotransferase, class I/classII RD04_RS05355 IPR033704 dUTPase, trimeric RD04_RS05355 IPR036157 dUTPase-like superfamily RD04_RS05355 IPR029054 dUTPase-like RD04_RS05355 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase RD04_RS05365 IPR018265 Ribosomal protein L35, conserved site RD04_RS05365 IPR037229 Ribosomal protein L35 superfamily RD04_RS05365 IPR001706 Ribosomal protein L35, non-mitochondrial RD04_RS05365 IPR021137 Ribosomal protein L35 RD04_RS05370 IPR035566 Ribosomal protein L20, C-terminal RD04_RS05370 IPR005813 Ribosomal protein L20 RD04_RS05375 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit RD04_RS05375 IPR006195 Aminoacyl-tRNA synthetase, class II RD04_RS05375 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial RD04_RS05375 IPR002319 Phenylalanyl-tRNA synthetase RD04_RS05375 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm RD04_RS05375 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal RD04_RS05380 IPR012340 Nucleic acid-binding, OB-fold RD04_RS05380 IPR005147 tRNA synthetase, B5-domain RD04_RS05380 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily RD04_RS05380 IPR009061 Putative DNA-binding domain superfamily RD04_RS05380 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain RD04_RS05380 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain RD04_RS05380 IPR005121 Ferrodoxin-fold anticodon-binding domain RD04_RS05380 IPR005146 B3/B4 tRNA-binding domain RD04_RS05380 IPR002547 tRNA-binding domain RD04_RS05380 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RD04_RS05380 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit RD04_RS05385 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily RD04_RS05385 IPR020816 Histone-like DNA-binding protein, conserved site RD04_RS05385 IPR000119 Histone-like DNA-binding protein RD04_RS05385 IPR005684 Integration host factor, alpha subunit RD04_RS05435 IPR007346 Endonuclease I RD04_RS05455 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain RD04_RS05455 IPR006130 Aspartate/ornithine carbamoyltransferase RD04_RS05455 IPR002082 Aspartate carbamoyltransferase RD04_RS05455 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding RD04_RS05455 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily RD04_RS05460 IPR007476 Putative exonuclease, RdgC RD04_RS05470 IPR023606 CoA-transferase family III domain superfamily RD04_RS05470 IPR003673 CoA-transferase family III RD04_RS05475 IPR000847 Transcription regulator HTH, LysR RD04_RS05475 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05475 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05475 IPR005119 LysR, substrate-binding RD04_RS05495 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS05495 IPR036291 NAD(P)-binding domain superfamily RD04_RS05495 IPR011283 Acetoacetyl-CoA reductase RD04_RS05495 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS05505 IPR035906 MetI-like superfamily RD04_RS05505 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS05510 IPR013611 Transport-associated OB, type 2 RD04_RS05510 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit RD04_RS05510 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05510 IPR003593 AAA+ ATPase domain RD04_RS05510 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA RD04_RS05510 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS05510 IPR003439 ABC transporter-like RD04_RS05510 IPR017871 ABC transporter, conserved site RD04_RS05515 IPR036291 NAD(P)-binding domain superfamily RD04_RS05515 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS05515 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RD04_RS05515 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RD04_RS05515 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS05515 IPR012802 Fatty oxidation complex, alpha subunit FadJ RD04_RS05515 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS05515 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS05515 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site RD04_RS05520 IPR005829 Sugar transporter, conserved site RD04_RS05520 IPR004736 MFS transporter, metabolite:H symporter RD04_RS05520 IPR020846 Major facilitator superfamily domain RD04_RS05520 IPR005828 Major facilitator, sugar transporter-like RD04_RS05520 IPR036292 Proline/betaine transporter ProP, C-terminal RD04_RS05520 IPR015041 Osmosensory transporter coiled coil RD04_RS05520 IPR036259 MFS transporter superfamily RD04_RS05525 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS05525 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS05525 IPR003660 HAMP domain RD04_RS05525 IPR005467 Histidine kinase domain RD04_RS05525 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS05525 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS05525 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS05530 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05530 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS05530 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS05530 IPR001789 Signal transduction response regulator, receiver domain RD04_RS05530 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS05530 IPR011006 CheY-like superfamily RD04_RS05535 IPR023400 DNA recombination and repair protein RecA, C-terminal RD04_RS05535 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain RD04_RS05535 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05535 IPR020584 DNA recombination/repair protein RecA, conserved site RD04_RS05535 IPR013765 DNA recombination and repair protein RecA RD04_RS05535 IPR003593 AAA+ ATPase domain RD04_RS05535 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface RD04_RS05540 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05540 IPR003783 Regulatory protein RecX RD04_RS05545 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05545 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain RD04_RS05545 IPR000847 Transcription regulator HTH, LysR RD04_RS05545 IPR005119 LysR, substrate-binding RD04_RS05545 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05550 IPR038071 UROD/MetE-like superfamily RD04_RS05550 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal RD04_RS05550 IPR006276 Cobalamin-independent methionine synthase RD04_RS05550 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal RD04_RS05560 IPR016102 Succinyl-CoA synthetase-like RD04_RS05560 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type RD04_RS05560 IPR011761 ATP-grasp fold RD04_RS05560 IPR005809 Succinate--CoA synthetase, beta subunit RD04_RS05560 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site RD04_RS05560 IPR005811 ATP-citrate lyase/succinyl-CoA ligase RD04_RS05560 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS05565 IPR005810 Succinyl-CoA ligase, alpha subunit RD04_RS05565 IPR016102 Succinyl-CoA synthetase-like RD04_RS05565 IPR036291 NAD(P)-binding domain superfamily RD04_RS05565 IPR005811 ATP-citrate lyase/succinyl-CoA ligase RD04_RS05565 IPR003781 CoA-binding RD04_RS05565 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site RD04_RS05565 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RD04_RS05570 IPR022301 Integral membrane protein YjbE RD04_RS05570 IPR005496 Integral membrane protein TerC RD04_RS05575 IPR022301 Integral membrane protein YjbE RD04_RS05575 IPR005496 Integral membrane protein TerC RD04_RS05580 IPR022418 Porphobilinogen deaminase, C-terminal RD04_RS05580 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily RD04_RS05580 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site RD04_RS05580 IPR000860 Porphobilinogen deaminase RD04_RS05580 IPR022417 Porphobilinogen deaminase, N-terminal RD04_RS05600 IPR036649 Inorganic pyrophosphatase superfamily RD04_RS05600 IPR008162 Inorganic pyrophosphatase RD04_RS05605 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily RD04_RS05605 IPR011234 Fumarylacetoacetase-like, C-terminal RD04_RS05640 IPR032789 Pilus formation protein, N-terminal RD04_RS05640 IPR007055 BON domain RD04_RS05640 IPR014004 Transport-associated and nodulation domain, bacteria RD04_RS05640 IPR004846 Type II/III secretion system RD04_RS05640 IPR001775 GspD/PilQ family RD04_RS05645 IPR001482 Type II/IV secretion system protein RD04_RS05645 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05645 IPR022399 Helicase/secretion neighbourhood ATPase RD04_RS05665 IPR005064 Bordetella uptake gene RD04_RS05665 IPR042100 Bordetella uptake gene, domain 1 RD04_RS05670 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD04_RS05670 IPR036291 NAD(P)-binding domain superfamily RD04_RS05670 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase RD04_RS05670 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site RD04_RS05670 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD04_RS05675 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily RD04_RS05675 IPR003767 Malate/L-lactate dehydrogenase-like RD04_RS05680 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05680 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05680 IPR005119 LysR, substrate-binding RD04_RS05680 IPR000847 Transcription regulator HTH, LysR RD04_RS05690 IPR006076 FAD dependent oxidoreductase RD04_RS05690 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS05690 IPR006278 Sarcosine oxidase subunit beta RD04_RS05695 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric RD04_RS05695 IPR038561 Sarcosine oxidase subunit delta superfamily RD04_RS05700 IPR006222 Aminomethyltransferase, folate-binding domain RD04_RS05700 IPR006277 Sarcosine oxidase, alpha subunit RD04_RS05700 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RD04_RS05700 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain RD04_RS05700 IPR023753 FAD/NAD(P)-binding domain RD04_RS05700 IPR042204 2Fe-2S iron-sulfur cluster binding domain, N-terminal RD04_RS05700 IPR041117 SoxA, A3 domain RD04_RS05700 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS05700 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 RD04_RS05700 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily RD04_RS05710 IPR004810 Formyltetrahydrofolate deformylase RD04_RS05710 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain RD04_RS05710 IPR002376 Formyl transferase, N-terminal RD04_RS05710 IPR036477 Formyl transferase, N-terminal domain superfamily RD04_RS05710 IPR002912 ACT domain RD04_RS05715 IPR042100 Bordetella uptake gene, domain 1 RD04_RS05715 IPR005064 Bordetella uptake gene RD04_RS05725 IPR019913 Pyrimidine utilisation protein RutD RD04_RS05725 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS05725 IPR029058 Alpha/Beta hydrolase fold RD04_RS05735 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase RD04_RS05735 IPR006094 FAD linked oxidase, N-terminal RD04_RS05735 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal RD04_RS05735 IPR016169 FAD-binding, type PCMH, subdomain 2 RD04_RS05735 IPR016167 FAD-binding, type PCMH, subdomain 1 RD04_RS05735 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS05735 IPR016166 FAD-binding domain, PCMH-type RD04_RS05735 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily RD04_RS05740 IPR023940 Dihydrodipicolinate reductase RD04_RS05740 IPR036291 NAD(P)-binding domain superfamily RD04_RS05740 IPR022663 Dihydrodipicolinate reductase, C-terminal RD04_RS05740 IPR000846 Dihydrodipicolinate reductase, N-terminal RD04_RS05740 IPR022664 Dihydrodipicolinate reductase, conserved site RD04_RS05745 IPR026592 Outer membrane protein assembly factor BamE RD04_RS05745 IPR007450 Lipoprotein SmpA/OmlA RD04_RS05745 IPR037873 BamE-like RD04_RS05750 IPR002481 Ferric-uptake regulator RD04_RS05750 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05750 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05755 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05755 IPR004604 DNA recombination/repair protein RecN RD04_RS05755 IPR003395 RecF/RecN/SMC, N-terminal RD04_RS05760 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal RD04_RS05760 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RD04_RS05760 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal RD04_RS05760 IPR002504 NAD kinase RD04_RS05765 IPR029016 GAF-like domain superfamily RD04_RS05765 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily RD04_RS05765 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain RD04_RS05765 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05765 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05765 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal RD04_RS05765 IPR002571 Heat-inducible transcription repressor HrcA RD04_RS05770 IPR033659 Ferrochelatase, N-terminal RD04_RS05770 IPR001015 Ferrochelatase RD04_RS05770 IPR019772 Ferrochelatase, active site RD04_RS05770 IPR033644 Ferrochelatase, C-terminal RD04_RS05780 IPR009012 GrpE nucleotide exchange factor, head RD04_RS05780 IPR000740 GrpE nucleotide exchange factor RD04_RS05780 IPR013805 GrpE nucleotide exchange factor, coiled-coil RD04_RS05790 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily RD04_RS05790 IPR013126 Heat shock protein 70 family RD04_RS05790 IPR012725 Chaperone DnaK RD04_RS05790 IPR018181 Heat shock protein 70, conserved site RD04_RS05790 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily RD04_RS05795 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily RD04_RS05795 IPR018253 DnaJ domain, conserved site RD04_RS05795 IPR036869 Chaperone J-domain superfamily RD04_RS05795 IPR001623 DnaJ domain RD04_RS05795 IPR002939 Chaperone DnaJ, C-terminal RD04_RS05795 IPR012724 Chaperone DnaJ RD04_RS05795 IPR001305 Heat shock protein DnaJ, cysteine-rich domain RD04_RS05795 IPR008971 HSP40/DnaJ peptide-binding RD04_RS05800 IPR007863 Peptidase M16, C-terminal RD04_RS05800 IPR001431 Peptidase M16, zinc-binding site RD04_RS05800 IPR011765 Peptidase M16, N-terminal RD04_RS05800 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like RD04_RS05810 IPR000182 GNAT domain RD04_RS05810 IPR016181 Acyl-CoA N-acyltransferase RD04_RS05820 IPR037219 Peptidase M41-like RD04_RS05820 IPR000642 Peptidase M41 RD04_RS05820 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05820 IPR005936 Peptidase, FtsH RD04_RS05820 IPR003960 ATPase, AAA-type, conserved site RD04_RS05820 IPR003593 AAA+ ATPase domain RD04_RS05820 IPR041569 AAA ATPase, AAA+ lid domain RD04_RS05820 IPR003959 ATPase, AAA-type, core RD04_RS05830 IPR009056 Cytochrome c-like domain RD04_RS05830 IPR036909 Cytochrome c-like domain superfamily RD04_RS05830 IPR008168 Cytochrome c, class IC RD04_RS05845 IPR024084 Isopropylmalate dehydrogenase-like domain RD04_RS05845 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site RD04_RS05845 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic RD04_RS05865 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05865 IPR001789 Signal transduction response regulator, receiver domain RD04_RS05865 IPR011006 CheY-like superfamily RD04_RS05865 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS05865 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS05870 IPR003018 GAF domain RD04_RS05870 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal RD04_RS05870 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS05870 IPR005467 Histidine kinase domain RD04_RS05870 IPR029016 GAF-like domain superfamily RD04_RS05870 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS05870 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS05870 IPR025201 Sensor protein KdpD, transmembrane domain RD04_RS05870 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS05870 IPR038318 KdpD, transmembrane domain superfamily RD04_RS05870 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS05875 IPR003820 Potassium-transporting ATPase C chain RD04_RS05880 IPR023298 P-type ATPase, transmembrane domain superfamily RD04_RS05880 IPR001757 P-type ATPase RD04_RS05880 IPR006391 P-type ATPase, B chain, subfamily IA RD04_RS05880 IPR018303 P-type ATPase, phosphorylation site RD04_RS05880 IPR023299 P-type ATPase, cytoplasmic domain N RD04_RS05880 IPR036412 HAD-like superfamily RD04_RS05880 IPR023214 HAD superfamily RD04_RS05880 IPR008250 P-type ATPase, A domain superfamily RD04_RS05885 IPR004623 Potassium-transporting ATPase A chain RD04_RS05895 IPR038377 Sodium/glucose symporter superfamily RD04_RS05895 IPR001734 Sodium/solute symporter RD04_RS05895 IPR019899 Sodium/solute symporter, VC2705 subfamily RD04_RS05905 IPR000390 Small multidrug resistance protein family RD04_RS05915 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS05915 IPR023753 FAD/NAD(P)-binding domain RD04_RS05915 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site RD04_RS05915 IPR005982 Thioredoxin reductase RD04_RS05920 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05920 IPR041027 FtsK alpha domain RD04_RS05920 IPR002543 FtsK domain RD04_RS05920 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS05920 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS05920 IPR018541 FtsK gamma domain RD04_RS05920 IPR025199 DNA translocase FtsK, 4TM region RD04_RS05925 IPR029046 Lipoprotein localisation LolA/LolB/LppX RD04_RS05925 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RD04_RS05925 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria RD04_RS05930 IPR003593 AAA+ ATPase domain RD04_RS05930 IPR021886 MgsA AAA+ ATPase C-terminal RD04_RS05930 IPR032423 AAA C-terminal domain RD04_RS05930 IPR003959 ATPase, AAA-type, core RD04_RS05930 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS05930 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RD04_RS05935 IPR002317 Serine-tRNA ligase, type1 RD04_RS05935 IPR033729 Serine-tRNA ligase catalytic core domain RD04_RS05935 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm RD04_RS05935 IPR006195 Aminoacyl-tRNA synthetase, class II RD04_RS05935 IPR015866 Serine-tRNA synthetase, type1, N-terminal RD04_RS05935 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) RD04_RS05935 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily RD04_RS05960 IPR029787 Nucleotide cyclase RD04_RS05960 IPR000160 GGDEF domain RD04_RS05960 IPR033416 Periplasmic sensor domain CHASE7 RD04_RS05975 IPR012910 TonB-dependent receptor, plug domain RD04_RS05975 IPR011662 Secretin/TonB, short N-terminal domain RD04_RS05975 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS05975 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS05975 IPR010917 TonB-dependent receptor, conserved site RD04_RS05975 IPR010105 TonB-dependent siderophore receptor RD04_RS05975 IPR039423 TonB-dependent receptor-like RD04_RS05975 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS05980 IPR011701 Major facilitator superfamily RD04_RS05980 IPR036259 MFS transporter superfamily RD04_RS05980 IPR020846 Major facilitator superfamily domain RD04_RS06000 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal RD04_RS06000 IPR022770 Ferric iron reductase FhuF domain RD04_RS06000 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like RD04_RS06010 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase RD04_RS06010 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS06020 IPR003148 Regulator of K+ conductance, N-terminal RD04_RS06020 IPR020884 Glutathione-regulated potassium-efflux system protein KefB RD04_RS06020 IPR036291 NAD(P)-binding domain superfamily RD04_RS06020 IPR038770 Sodium/solute symporter superfamily RD04_RS06020 IPR004771 K+/H+ exchanger RD04_RS06020 IPR006153 Cation/H+ exchanger RD04_RS06025 IPR011294 3-hydroxybutyrate dehydrogenase RD04_RS06025 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS06025 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS06025 IPR036291 NAD(P)-binding domain superfamily RD04_RS06035 IPR005583 Peroxide stress protein YaaA RD04_RS06045 IPR032692 Integral membrane protein YccS, N-terminal RD04_RS06055 IPR000160 GGDEF domain RD04_RS06055 IPR029787 Nucleotide cyclase RD04_RS06065 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN RD04_RS06065 IPR034505 Anaerobic coproporphyrinogen-III oxidase RD04_RS06065 IPR006638 Elp3/MiaB/NifB RD04_RS06065 IPR023404 Radical SAM, alpha/beta horseshoe RD04_RS06065 IPR007197 Radical SAM RD04_RS06065 IPR010723 HemN, C-terminal RD04_RS06075 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS06075 IPR000792 Transcription regulator LuxR, C-terminal RD04_RS06075 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS06080 IPR012675 Beta-grasp domain superfamily RD04_RS06080 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) RD04_RS06080 IPR004154 Anticodon-binding RD04_RS06080 IPR012947 Threonyl/alanyl tRNA synthetase, SAD RD04_RS06080 IPR036621 Anticodon-binding domain superfamily RD04_RS06080 IPR033728 Threonine-tRNA ligase catalytic core domain RD04_RS06080 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily RD04_RS06080 IPR002320 Threonine-tRNA ligase, class IIa RD04_RS06080 IPR012676 TGS-like RD04_RS06080 IPR004095 TGS RD04_RS06080 IPR006195 Aminoacyl-tRNA synthetase, class II RD04_RS06085 IPR019815 Translation initiation factor 3, C-terminal RD04_RS06085 IPR019814 Translation initiation factor 3, N-terminal RD04_RS06085 IPR019813 Translation initiation factor 3, conserved site RD04_RS06085 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily RD04_RS06085 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily RD04_RS06085 IPR001288 Translation initiation factor 3 RD04_RS06090 IPR004215 Prokaryotic glutathione synthetase, N-terminal RD04_RS06090 IPR016185 Pre-ATP-grasp domain superfamily RD04_RS06090 IPR011761 ATP-grasp fold RD04_RS06090 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS06090 IPR006284 Glutathione synthetase, prokaryotic RD04_RS06090 IPR004218 Prokaryotic glutathione synthetase, ATP-binding RD04_RS06100 IPR002114 Phosphotransferase system, HPr serine phosphorylation site RD04_RS06100 IPR000032 Phosphocarrier protein HPr-like RD04_RS06100 IPR035895 HPr-like superfamily RD04_RS06100 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RD04_RS06105 IPR008279 PEP-utilising enzyme, mobile domain RD04_RS06105 IPR036637 Phosphohistidine domain superfamily RD04_RS06105 IPR000121 PEP-utilising enzyme, C-terminal RD04_RS06105 IPR024692 Phosphotransferase system, enzyme I RD04_RS06105 IPR036618 PtsI, HPr-binding domain superfamily RD04_RS06105 IPR008731 Phosphotransferase system, enzyme I N-terminal RD04_RS06105 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS06105 IPR023151 PEP-utilising enzyme, conserved site RD04_RS06105 IPR040442 Pyruvate kinase-like domain superfamily RD04_RS06105 IPR006318 Phosphotransferase system, enzyme I-like RD04_RS06105 IPR018274 PEP-utilising enzyme, active site RD04_RS06115 IPR003462 Ornithine cyclodeaminase/mu-crystallin RD04_RS06115 IPR036291 NAD(P)-binding domain superfamily RD04_RS06115 IPR023401 Ornithine cyclodeaminase, N-terminal RD04_RS06125 IPR014337 Ectoine/Hydroxyectoine ABC transporter, substrate-binding protein EhuB RD04_RS06125 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS06130 IPR014342 Ectoine/hydroxyectoine ABC transporter, permease protein EhuC RD04_RS06130 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS06130 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS06130 IPR035906 MetI-like superfamily RD04_RS06135 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS06135 IPR014341 Ectoine/hydroxyectoine ABC transporter, permease protein EhuD RD04_RS06135 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS06135 IPR035906 MetI-like superfamily RD04_RS06140 IPR017871 ABC transporter, conserved site RD04_RS06140 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type RD04_RS06140 IPR014343 Ectoine/hydroxyectoine ABC transporter, ATP-binding protein RD04_RS06140 IPR003593 AAA+ ATPase domain RD04_RS06140 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06140 IPR003439 ABC transporter-like RD04_RS06155 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RD04_RS06155 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RD04_RS06155 IPR033689 NAD-dependent formate dehydrogenase RD04_RS06155 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RD04_RS06155 IPR036291 NAD(P)-binding domain superfamily RD04_RS06155 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD04_RS06165 IPR003211 AmiS/UreI transporter RD04_RS06165 IPR038523 AmiS/UreI transporter superfamily RD04_RS06170 IPR004304 Acetamidase/Formamidase RD04_RS06185 IPR000771 Fructose-bisphosphate aldolase, class-II RD04_RS06185 IPR013785 Aldolase-type TIM barrel RD04_RS06185 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype RD04_RS06195 IPR018236 SAICAR synthetase, conserved site RD04_RS06195 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase RD04_RS06195 IPR028923 SAICAR synthetase/ADE2, N-terminal RD04_RS06200 IPR031451 mRNA interferase toxin MqsR RD04_RS06200 IPR038493 Toxin MqsR superfamily RD04_RS06205 IPR032758 Antitoxin MqsA/HigA-2 RD04_RS06205 IPR022453 Zinc finger, MqsA-type RD04_RS06205 IPR001387 Cro/C1-type helix-turn-helix domain RD04_RS06205 IPR022452 Antitoxin MqsA RD04_RS06205 IPR010982 Lambda repressor-like, DNA-binding domain superfamily RD04_RS06210 IPR022920 Disulphide bond formation protein DsbB RD04_RS06210 IPR003752 Disulphide bond formation protein DsbB/BdbC RD04_RS06210 IPR023380 DsbB-like superfamily RD04_RS06215 IPR000031 PurE domain RD04_RS06215 IPR024694 PurE, prokaryotic type RD04_RS06215 IPR033747 Class I PurE RD04_RS06215 IPR035893 PurE domain superfamily RD04_RS06220 IPR011054 Rudiment single hybrid motif RD04_RS06220 IPR011761 ATP-grasp fold RD04_RS06220 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit RD04_RS06220 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RD04_RS06220 IPR016185 Pre-ATP-grasp domain superfamily RD04_RS06220 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain RD04_RS06220 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS06225 IPR006070 YrdC-like domain RD04_RS06225 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily RD04_RS06225 IPR005145 Putative GTP-binding controlling metal-binding domain RD04_RS06225 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RD04_RS06225 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 RD04_RS06230 IPR018313 Solute-binding protein family 3, conserved site RD04_RS06230 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS06235 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS06235 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS06235 IPR005471 Transcription regulator IclR, N-terminal RD04_RS06235 IPR014757 Transcription regulator IclR, C-terminal RD04_RS06235 IPR029016 GAF-like domain superfamily RD04_RS06240 IPR005925 Agmatinase-related RD04_RS06240 IPR020855 Ureohydrolase, manganese-binding site RD04_RS06240 IPR006035 Ureohydrolase RD04_RS06240 IPR023696 Ureohydrolase domain superfamily RD04_RS06245 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS06245 IPR018313 Solute-binding protein family 3, conserved site RD04_RS06250 IPR035906 MetI-like superfamily RD04_RS06250 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS06250 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS06255 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06255 IPR017871 ABC transporter, conserved site RD04_RS06255 IPR003439 ABC transporter-like RD04_RS06255 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type RD04_RS06255 IPR003593 AAA+ ATPase domain RD04_RS06260 IPR029061 Thiamin diphosphate-binding fold RD04_RS06260 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RD04_RS06260 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RD04_RS06270 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS06270 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS06270 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS06270 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS06270 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS06270 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS06270 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS06275 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS06275 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RD04_RS06275 IPR012846 Acetolactate synthase, large subunit, biosynthetic RD04_RS06275 IPR000399 TPP-binding enzyme, conserved site RD04_RS06275 IPR039368 Acetolactate synthase large subunit, TPP binding domain RD04_RS06275 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RD04_RS06275 IPR012000 Thiamine pyrophosphate enzyme, central domain RD04_RS06275 IPR029061 Thiamin diphosphate-binding fold RD04_RS06280 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS06280 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS06280 IPR000847 Transcription regulator HTH, LysR RD04_RS06280 IPR005119 LysR, substrate-binding RD04_RS06285 IPR004107 Integrase, SAM-like, N-terminal RD04_RS06285 IPR011932 Tyrosine recombinase XerD RD04_RS06285 IPR011010 DNA breaking-rejoining enzyme, catalytic core RD04_RS06285 IPR013762 Integrase-like, catalytic domain superfamily RD04_RS06285 IPR002104 Integrase, catalytic domain RD04_RS06285 IPR023009 Tyrosine recombinase XerC/XerD RD04_RS06285 IPR010998 Integrase/recombinase, N-terminal RD04_RS06290 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain RD04_RS06290 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily RD04_RS06290 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RD04_RS06295 IPR021196 PdxT/SNO family, conserved site RD04_RS06295 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO RD04_RS06295 IPR029062 Class I glutamine amidotransferase-like RD04_RS06310 IPR012338 Beta-lactamase/transpeptidase-like RD04_RS06310 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A RD04_RS06310 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal RD04_RS06320 IPR005829 Sugar transporter, conserved site RD04_RS06320 IPR011701 Major facilitator superfamily RD04_RS06320 IPR020846 Major facilitator superfamily domain RD04_RS06320 IPR036259 MFS transporter superfamily RD04_RS06330 IPR014016 UvrD-like helicase, ATP-binding domain RD04_RS06330 IPR011335 Restriction endonuclease type II-like RD04_RS06330 IPR000212 DNA helicase, UvrD/REP type RD04_RS06330 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06330 IPR014017 UvrD-like DNA helicase, C-terminal RD04_RS06330 IPR011604 Exonuclease, phage-type/RecB, C-terminal RD04_RS06330 IPR014152 DNA helicase subunit AddA RD04_RS06330 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type RD04_RS06330 IPR034739 UvrD/AddA helicase, N-terminal RD04_RS06340 IPR021029 DNA polymerase III, tau subunit, domain V RD04_RS06340 IPR003593 AAA+ ATPase domain RD04_RS06340 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV RD04_RS06340 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily RD04_RS06340 IPR001270 ClpA/B family RD04_RS06340 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RD04_RS06340 IPR012763 DNA polymerase III, subunit gamma/ tau RD04_RS06340 IPR022754 DNA polymerase III, gamma subunit, domain III RD04_RS06340 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06345 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RD04_RS06345 IPR004401 Nucleoid-associated protein YbaB/EbfC family RD04_RS06350 IPR034137 RecR, TOPRIM domain RD04_RS06350 IPR006171 TOPRIM domain RD04_RS06350 IPR023628 Recombination protein RecR, C4-type zinc finger RD04_RS06350 IPR023627 Recombination protein RecR RD04_RS06350 IPR000093 DNA recombination protein RecR RD04_RS06370 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative RD04_RS06375 IPR006070 YrdC-like domain RD04_RS06375 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RD04_RS06410 IPR029039 Flavoprotein-like superfamily RD04_RS06410 IPR005025 NADPH-dependent FMN reductase-like RD04_RS06415 IPR036694 Dodecin-like superfamily RD04_RS06415 IPR025543 Dodecin-like RD04_RS06415 IPR009923 Dodecin RD04_RS06420 IPR036187 DNA mismatch repair protein MutS, core domain superfamily RD04_RS06420 IPR036678 MutS, connector domain superfamily RD04_RS06420 IPR007696 DNA mismatch repair protein MutS, core RD04_RS06420 IPR007695 DNA mismatch repair protein MutS-like, N-terminal RD04_RS06420 IPR005748 DNA mismatch repair protein MutS RD04_RS06420 IPR007860 DNA mismatch repair protein MutS, connector domain RD04_RS06420 IPR007861 DNA mismatch repair protein MutS, clamp RD04_RS06420 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06420 IPR016151 DNA mismatch repair protein MutS, N-terminal RD04_RS06420 IPR017261 DNA mismatch repair protein MutS/MSH RD04_RS06420 IPR000432 DNA mismatch repair protein MutS, C-terminal RD04_RS06425 IPR003347 JmjC domain RD04_RS06425 IPR039994 JmjC domain-containing RD04_RS06435 IPR039458 FimA-like RD04_RS06435 IPR036937 Fimbrial-type adhesion domain superfamily RD04_RS06435 IPR008966 Adhesion domain superfamily RD04_RS06440 IPR010653 NlpB/DapX lipoprotein RD04_RS06440 IPR014524 Outer membrane protein assembly factor BamC RD04_RS06440 IPR042268 Outer membrane protein assembly factor BamC, C-terminal RD04_RS06445 IPR002220 DapA-like RD04_RS06445 IPR020625 Schiff base-forming aldolase, active site RD04_RS06445 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA RD04_RS06445 IPR020624 Schiff base-forming aldolase, conserved site RD04_RS06445 IPR013785 Aldolase-type TIM barrel RD04_RS06450 IPR008915 Peptidase M50 RD04_RS06460 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS06460 IPR001320 Ionotropic glutamate receptor RD04_RS06460 IPR018313 Solute-binding protein family 3, conserved site RD04_RS06465 IPR035906 MetI-like superfamily RD04_RS06465 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS06465 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS06470 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06470 IPR003439 ABC transporter-like RD04_RS06470 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type RD04_RS06470 IPR003593 AAA+ ATPase domain RD04_RS06470 IPR017871 ABC transporter, conserved site RD04_RS06475 IPR007685 RelA/SpoT RD04_RS06475 IPR012675 Beta-grasp domain superfamily RD04_RS06475 IPR004095 TGS RD04_RS06475 IPR004811 RelA/SpoT family RD04_RS06475 IPR003607 HD/PDEase domain RD04_RS06475 IPR033655 RelA, TGS domain RD04_RS06475 IPR002912 ACT domain RD04_RS06475 IPR012676 TGS-like RD04_RS06480 IPR012293 RNA polymerase subunit, RPB6/omega RD04_RS06480 IPR003716 DNA-directed RNA polymerase, omega subunit RD04_RS06480 IPR036161 RPB6/omega subunit-like superfamily RD04_RS06480 IPR006110 RNA polymerase, subunit omega/K/RPB6 RD04_RS06485 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06485 IPR008144 Guanylate kinase-like domain RD04_RS06485 IPR020590 Guanylate kinase, conserved site RD04_RS06485 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RD04_RS06485 IPR017665 Guanylate kinase RD04_RS06490 IPR009056 Cytochrome c-like domain RD04_RS06490 IPR036909 Cytochrome c-like domain superfamily RD04_RS06495 IPR036909 Cytochrome c-like domain superfamily RD04_RS06495 IPR009056 Cytochrome c-like domain RD04_RS06495 IPR024167 Cytochrome c4-like RD04_RS06500 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS06500 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS06500 IPR036291 NAD(P)-binding domain superfamily RD04_RS06505 IPR038765 Papain-like cysteine peptidase superfamily RD04_RS06505 IPR000064 Endopeptidase, NLPC/P60 domain RD04_RS06510 IPR011271 AMP nucleosidase RD04_RS06510 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily RD04_RS06510 IPR018953 AMP nucleoside phosphorylase, N-terminal RD04_RS06510 IPR035994 Nucleoside phosphorylase superfamily RD04_RS06510 IPR000845 Nucleoside phosphorylase domain RD04_RS06530 IPR013551 Domain of unknown function DUF1732 RD04_RS06530 IPR005229 Conserved hypothetical protein CHP00255 RD04_RS06530 IPR013527 YicC-like, N-terminal RD04_RS06535 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS06535 IPR002381 Ribonuclease PH, bacterial-type RD04_RS06535 IPR001247 Exoribonuclease, phosphorolytic domain 1 RD04_RS06535 IPR018336 Ribonuclease PH, conserved site RD04_RS06535 IPR036345 Exoribonuclease, PH domain 2 superfamily RD04_RS06535 IPR027408 PNPase/RNase PH domain superfamily RD04_RS06535 IPR015847 Exoribonuclease, phosphorolytic domain 2 RD04_RS06545 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS06545 IPR005119 LysR, substrate-binding RD04_RS06545 IPR000847 Transcription regulator HTH, LysR RD04_RS06545 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS06550 IPR035919 EAL domain superfamily RD04_RS06550 IPR000160 GGDEF domain RD04_RS06550 IPR003660 HAMP domain RD04_RS06550 IPR029787 Nucleotide cyclase RD04_RS06550 IPR001633 EAL domain RD04_RS06550 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 RD04_RS06555 IPR029001 Inosine triphosphate pyrophosphatase-like RD04_RS06555 IPR020922 dITP/XTP pyrophosphatase RD04_RS06555 IPR002637 Ham1-like protein RD04_RS06565 IPR006638 Elp3/MiaB/NifB RD04_RS06565 IPR034505 Anaerobic coproporphyrinogen-III oxidase RD04_RS06565 IPR010723 HemN, C-terminal RD04_RS06565 IPR004559 Heme chaperone HemW-like RD04_RS06565 IPR023404 Radical SAM, alpha/beta horseshoe RD04_RS06565 IPR007197 Radical SAM RD04_RS06570 IPR027302 Glutamine synthetase, N-terminal conserved site RD04_RS06570 IPR001637 Glutamine synthetase class-I, adenylation site RD04_RS06570 IPR036651 Glutamine synthetase, N-terminal domain superfamily RD04_RS06570 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain RD04_RS06570 IPR008146 Glutamine synthetase, catalytic domain RD04_RS06570 IPR027303 Glutamine synthetase, glycine-rich site RD04_RS06570 IPR004809 Glutamine synthetase type I RD04_RS06570 IPR008147 Glutamine synthetase, beta-Grasp domain RD04_RS06575 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS06575 IPR005467 Histidine kinase domain RD04_RS06575 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS06575 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS06575 IPR000014 PAS domain RD04_RS06575 IPR035965 PAS domain superfamily RD04_RS06575 IPR013767 PAS fold RD04_RS06575 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS06575 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS06580 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RD04_RS06580 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RD04_RS06580 IPR025944 Sigma-54 interaction domain, conserved site RD04_RS06580 IPR002078 RNA polymerase sigma factor 54 interaction domain RD04_RS06580 IPR001789 Signal transduction response regulator, receiver domain RD04_RS06580 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06580 IPR002197 DNA binding HTH domain, Fis-type RD04_RS06580 IPR009057 Homeobox-like domain superfamily RD04_RS06580 IPR011006 CheY-like superfamily RD04_RS06580 IPR003593 AAA+ ATPase domain RD04_RS06580 IPR010114 DNA-binding transcriptional regulator NtrC RD04_RS06585 IPR000847 Transcription regulator HTH, LysR RD04_RS06585 IPR005119 LysR, substrate-binding RD04_RS06585 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS06585 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS06590 IPR014710 RmlC-like jelly roll fold RD04_RS06590 IPR011051 RmlC-like cupin domain superfamily RD04_RS06590 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain RD04_RS06590 IPR003829 Pirin, N-terminal domain RD04_RS06590 IPR012093 Pirin RD04_RS06595 IPR011051 RmlC-like cupin domain superfamily RD04_RS06595 IPR008778 Pirin, C-terminal domain RD04_RS06595 IPR014710 RmlC-like jelly roll fold RD04_RS06595 IPR012093 Pirin RD04_RS06595 IPR003829 Pirin, N-terminal domain RD04_RS06605 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06605 IPR013611 Transport-associated OB, type 2 RD04_RS06605 IPR017871 ABC transporter, conserved site RD04_RS06605 IPR003439 ABC transporter-like RD04_RS06605 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit RD04_RS06605 IPR003593 AAA+ ATPase domain RD04_RS06605 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS06610 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS06610 IPR035906 MetI-like superfamily RD04_RS06615 IPR026045 Ferric binding protein RD04_RS06620 IPR033892 Ferredoxin--NADP reductase, bacteria RD04_RS06620 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS06620 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS06620 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase RD04_RS06620 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS06620 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS06620 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain RD04_RS06625 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS06625 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS06625 IPR000847 Transcription regulator HTH, LysR RD04_RS06625 IPR005119 LysR, substrate-binding RD04_RS06635 IPR018170 Aldo/keto reductase, conserved site RD04_RS06635 IPR020471 Aldo/keto reductase RD04_RS06635 IPR036812 NADP-dependent oxidoreductase domain superfamily RD04_RS06635 IPR023210 NADP-dependent oxidoreductase domain RD04_RS06645 IPR006175 YjgF/YER057c/UK114 family RD04_RS06645 IPR035959 RutC-like superfamily RD04_RS06645 IPR019897 RidA, conserved site RD04_RS06645 IPR006056 RidA family RD04_RS06650 IPR011545 DEAD/DEAH box helicase domain RD04_RS06650 IPR033454 RecG, wedge domain RD04_RS06650 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06650 IPR004609 ATP-dependent DNA helicase RecG RD04_RS06650 IPR012340 Nucleic acid-binding, OB-fold RD04_RS06650 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS06650 IPR001650 Helicase, C-terminal RD04_RS06655 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS06655 IPR005119 LysR, substrate-binding RD04_RS06655 IPR000847 Transcription regulator HTH, LysR RD04_RS06655 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS06660 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS06660 IPR000847 Transcription regulator HTH, LysR RD04_RS06660 IPR005119 LysR, substrate-binding RD04_RS06660 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS06665 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS06665 IPR015590 Aldehyde dehydrogenase domain RD04_RS06665 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS06665 IPR010061 Methylmalonate-semialdehyde dehydrogenase RD04_RS06665 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS06665 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS06670 IPR009078 Ferritin-like superfamily RD04_RS06670 IPR012347 Ferritin-like RD04_RS06670 IPR023188 DNA-binding protein Dps, conserved site RD04_RS06670 IPR002177 DNA-binding protein Dps RD04_RS06670 IPR008331 Ferritin/DPS protein domain RD04_RS06695 IPR003593 AAA+ ATPase domain RD04_RS06695 IPR003439 ABC transporter-like RD04_RS06695 IPR017871 ABC transporter, conserved site RD04_RS06695 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06705 IPR001296 Glycosyl transferase, family 1 RD04_RS06715 IPR003715 Polysaccharide export protein RD04_RS06720 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation RD04_RS06720 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal RD04_RS06720 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase RD04_RS06720 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal RD04_RS06720 IPR017476 UDP-glucose/GDP-mannose dehydrogenase RD04_RS06720 IPR036291 NAD(P)-binding domain superfamily RD04_RS06720 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS06720 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily RD04_RS06725 IPR001509 NAD-dependent epimerase/dehydratase RD04_RS06725 IPR036291 NAD(P)-binding domain superfamily RD04_RS06730 IPR007833 Capsule polysaccharide biosynthesis RD04_RS06735 IPR007833 Capsule polysaccharide biosynthesis RD04_RS06745 IPR036291 NAD(P)-binding domain superfamily RD04_RS06745 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS06745 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS06760 IPR023753 FAD/NAD(P)-binding domain RD04_RS06760 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily RD04_RS06760 IPR028202 Reductase, C-terminal RD04_RS06760 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS06770 IPR017871 ABC transporter, conserved site RD04_RS06770 IPR003439 ABC transporter-like RD04_RS06770 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06770 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS06770 IPR003593 AAA+ ATPase domain RD04_RS06775 IPR017871 ABC transporter, conserved site RD04_RS06775 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06775 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS06775 IPR003593 AAA+ ATPase domain RD04_RS06775 IPR003439 ABC transporter-like RD04_RS06780 IPR001851 ABC transporter, permease RD04_RS06780 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal RD04_RS06790 IPR005496 Integral membrane protein TerC RD04_RS06790 IPR022301 Integral membrane protein YjbE RD04_RS06795 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS06795 IPR036291 NAD(P)-binding domain superfamily RD04_RS06795 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS06800 IPR005064 Bordetella uptake gene RD04_RS06800 IPR042100 Bordetella uptake gene, domain 1 RD04_RS06815 IPR041628 ChlI/MoxR, AAA lid domain RD04_RS06815 IPR011703 ATPase, AAA-3 RD04_RS06815 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS06845 IPR000917 Sulfatase, N-terminal RD04_RS06845 IPR024607 Sulfatase, conserved site RD04_RS06845 IPR017850 Alkaline-phosphatase-like, core domain superfamily RD04_RS06870 IPR011006 CheY-like superfamily RD04_RS06870 IPR001789 Signal transduction response regulator, receiver domain RD04_RS06870 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS06870 IPR000792 Transcription regulator LuxR, C-terminal RD04_RS06875 IPR023828 Peptidase S8, subtilisin, Ser-active site RD04_RS06875 IPR036709 Autotransporter beta-domain superfamily RD04_RS06875 IPR034061 Autotransporter serine protease peptidase domain RD04_RS06875 IPR015500 Peptidase S8, subtilisin-related RD04_RS06875 IPR022398 Peptidase S8, subtilisin, His-active site RD04_RS06875 IPR036852 Peptidase S8/S53 domain superfamily RD04_RS06875 IPR005546 Autotransporter beta-domain RD04_RS06875 IPR000209 Peptidase S8/S53 domain RD04_RS06875 IPR011050 Pectin lyase fold/virulence factor RD04_RS06875 IPR006315 Outer membrane autotransporter barrel RD04_RS06875 IPR013425 Autotransporter-associated beta strand repeat RD04_RS06880 IPR032758 Antitoxin MqsA/HigA-2 RD04_RS06880 IPR001387 Cro/C1-type helix-turn-helix domain RD04_RS06880 IPR010982 Lambda repressor-like, DNA-binding domain superfamily RD04_RS06885 IPR009387 Toxin HigB-2 RD04_RS06890 IPR036249 Thioredoxin-like superfamily RD04_RS06890 IPR004045 Glutathione S-transferase, N-terminal RD04_RS06890 IPR004046 Glutathione S-transferase, C-terminal RD04_RS06890 IPR010987 Glutathione S-transferase, C-terminal-like RD04_RS06890 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RD04_RS06890 IPR040079 Glutathione Transferase family RD04_RS06895 IPR003819 TauD/TfdA-like domain RD04_RS06895 IPR042098 Taurine dioxygenase TauD-like superfamily RD04_RS06905 IPR042100 Bordetella uptake gene, domain 1 RD04_RS06905 IPR005064 Bordetella uptake gene RD04_RS06910 IPR036291 NAD(P)-binding domain superfamily RD04_RS06910 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS06910 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS06910 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RD04_RS06915 IPR000262 FMN-dependent dehydrogenase RD04_RS06915 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent RD04_RS06915 IPR037396 FMN hydroxy acid dehydrogenase domain RD04_RS06915 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site RD04_RS06915 IPR013785 Aldolase-type TIM barrel RD04_RS06920 IPR011234 Fumarylacetoacetase-like, C-terminal RD04_RS06920 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily RD04_RS06925 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS06925 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS06925 IPR036291 NAD(P)-binding domain superfamily RD04_RS06930 IPR036291 NAD(P)-binding domain superfamily RD04_RS06930 IPR011283 Acetoacetyl-CoA reductase RD04_RS06930 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS06930 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS06935 IPR005064 Bordetella uptake gene RD04_RS06935 IPR042100 Bordetella uptake gene, domain 1 RD04_RS06940 IPR037405 HTH-type transcriptional regulator GbpR, PBP2 domain RD04_RS06940 IPR000847 Transcription regulator HTH, LysR RD04_RS06940 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS06940 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS06940 IPR005119 LysR, substrate-binding RD04_RS06945 IPR005064 Bordetella uptake gene RD04_RS06945 IPR042100 Bordetella uptake gene, domain 1 RD04_RS06970 IPR005025 NADPH-dependent FMN reductase-like RD04_RS06970 IPR014063 Arsenate resistance ArsH RD04_RS06970 IPR029039 Flavoprotein-like superfamily RD04_RS06995 IPR042100 Bordetella uptake gene, domain 1 RD04_RS06995 IPR005064 Bordetella uptake gene RD04_RS07000 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS07000 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS07000 IPR036291 NAD(P)-binding domain superfamily RD04_RS07005 IPR000847 Transcription regulator HTH, LysR RD04_RS07005 IPR005119 LysR, substrate-binding RD04_RS07005 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS07005 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS07020 IPR042100 Bordetella uptake gene, domain 1 RD04_RS07020 IPR005064 Bordetella uptake gene RD04_RS07025 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RD04_RS07025 IPR005281 Monovalent cation:proton antiporter, subunit B RD04_RS07025 IPR007182 Na+/H+ antiporter MnhB subunit-related protein RD04_RS07025 IPR025383 Domain of unknown function DUF4040 RD04_RS07025 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RD04_RS07025 IPR005663 Monovalent cation proton antiporter subunit A RD04_RS07030 IPR006673 Mnh complex subunit C1 RD04_RS07030 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like RD04_RS07035 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RD04_RS07035 IPR004775 Na(+)/H(+) antiporter subunit D1 RD04_RS07040 IPR002758 Na+/H+ antiporter subunit E RD04_RS07040 IPR004847 Na(+)/H(+) antiporter subunit E1 RD04_RS07045 IPR007208 Na(+)/H(+) antiporter subunit F-like RD04_RS07065 IPR036412 HAD-like superfamily RD04_RS07065 IPR023214 HAD superfamily RD04_RS07070 IPR002125 Cytidine and deoxycytidylate deaminase domain RD04_RS07070 IPR016193 Cytidine deaminase-like RD04_RS07070 IPR016192 APOBEC/CMP deaminase, zinc-binding RD04_RS07070 IPR028883 tRNA-specific adenosine deaminase RD04_RS07075 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily RD04_RS07075 IPR003507 Peptidase family S66 RD04_RS07075 IPR029062 Class I glutamine amidotransferase-like RD04_RS07075 IPR040921 LD-carboxypeptidase, C-terminal RD04_RS07075 IPR040449 LD-carboxypeptidase, N-terminal RD04_RS07075 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal RD04_RS07080 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS07080 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS07080 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS07080 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS07085 IPR004681 TRAP transporter large membrane protein DctM RD04_RS07085 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD04_RS07095 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS07095 IPR026289 Solute binding protein, TakP-like RD04_RS07095 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS07095 IPR041721 Lactate-binding periplasmic protein TTHA0766 RD04_RS07095 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS07100 IPR003593 AAA+ ATPase domain RD04_RS07100 IPR003439 ABC transporter-like RD04_RS07100 IPR032781 ABC-transporter extension domain RD04_RS07100 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07105 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07105 IPR003593 AAA+ ATPase domain RD04_RS07105 IPR003439 ABC transporter-like RD04_RS07130 IPR001498 Impact, N-terminal RD04_RS07130 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site RD04_RS07130 IPR035647 EF-G domain III/V-like RD04_RS07130 IPR036956 Impact, N-terminal domain superfamily RD04_RS07130 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS07130 IPR023582 Impact family RD04_RS07135 IPR005746 Thioredoxin RD04_RS07135 IPR017937 Thioredoxin, conserved site RD04_RS07135 IPR013766 Thioredoxin domain RD04_RS07135 IPR036249 Thioredoxin-like superfamily RD04_RS07145 IPR006043 Xanthine/uracil/vitamin C permease RD04_RS07145 IPR026033 Azaguanine-like transporters RD04_RS07150 IPR017861 Kae1/TsaD family RD04_RS07150 IPR000905 Gcp-like domain RD04_RS07150 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD RD04_RS07160 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY RD04_RS07165 IPR036523 SurE-like phosphatase/nucleotidase superfamily RD04_RS07165 IPR030048 Survival protein SurE RD04_RS07165 IPR002828 Survival protein SurE-like phosphatase/nucleotidase RD04_RS07170 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS07170 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase RD04_RS07175 IPR016047 Peptidase M23 RD04_RS07175 IPR036779 LysM domain superfamily RD04_RS07175 IPR018392 LysM domain RD04_RS07175 IPR011055 Duplicated hybrid motif RD04_RS07195 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS07195 IPR012340 Nucleic acid-binding, OB-fold RD04_RS07195 IPR030391 RNA methyltransferase TrmA, conserved site RD04_RS07195 IPR010280 (Uracil-5)-methyltransferase family RD04_RS07195 IPR030390 RNA methyltransferase TrmA, active site RD04_RS07195 IPR002792 TRAM domain RD04_RS07195 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD RD04_RS07200 IPR015358 Transcription regulator MerR, DNA binding RD04_RS07200 IPR000551 MerR-type HTH domain RD04_RS07200 IPR009061 Putative DNA-binding domain superfamily RD04_RS07200 IPR011789 Cu(I)-responsive transcriptional regulator RD04_RS07210 IPR011767 Glutaredoxin active site RD04_RS07210 IPR014025 Glutaredoxin subgroup RD04_RS07210 IPR013740 Redoxin RD04_RS07210 IPR011906 Glutaredoxin domain RD04_RS07210 IPR037944 Peroxiredoxin-5-like RD04_RS07210 IPR036249 Thioredoxin-like superfamily RD04_RS07210 IPR002109 Glutaredoxin RD04_RS07215 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily RD04_RS07215 IPR023753 FAD/NAD(P)-binding domain RD04_RS07215 IPR021179 Mercury(II) reductase RD04_RS07215 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I RD04_RS07215 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS07215 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site RD04_RS07215 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD04_RS07220 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS07220 IPR007473 Ribosomal RNA large subunit methyltransferase J RD04_RS07225 IPR030395 Glycerophosphodiester phosphodiesterase domain RD04_RS07225 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily RD04_RS07230 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type RD04_RS07230 IPR027304 Trigger factor/SurA domain superfamily RD04_RS07230 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site RD04_RS07235 IPR013830 SGNH hydrolase-type esterase domain RD04_RS07235 IPR036514 SGNH hydrolase superfamily RD04_RS07240 IPR003439 ABC transporter-like RD04_RS07240 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07240 IPR017871 ABC transporter, conserved site RD04_RS07240 IPR003593 AAA+ ATPase domain RD04_RS07250 IPR007055 BON domain RD04_RS07250 IPR014004 Transport-associated and nodulation domain, bacteria RD04_RS07260 IPR026042 Stress response protein YjbJ RD04_RS07260 IPR008462 CsbD-like domain RD04_RS07260 IPR036629 YjbJ superfamily RD04_RS07265 IPR011810 Cyanophycin synthetase RD04_RS07265 IPR013221 Mur ligase, central RD04_RS07265 IPR011761 ATP-grasp fold RD04_RS07265 IPR036565 Mur-like, catalytic domain superfamily RD04_RS07265 IPR004101 Mur ligase, C-terminal RD04_RS07265 IPR036615 Mur ligase, C-terminal domain superfamily RD04_RS07265 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS07265 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain RD04_RS07270 IPR036565 Mur-like, catalytic domain superfamily RD04_RS07270 IPR013651 ATP-grasp fold, RimK-type RD04_RS07270 IPR036615 Mur ligase, C-terminal domain superfamily RD04_RS07270 IPR011761 ATP-grasp fold RD04_RS07270 IPR013221 Mur ligase, central RD04_RS07270 IPR011810 Cyanophycin synthetase RD04_RS07270 IPR004101 Mur ligase, C-terminal RD04_RS07290 IPR011197 Uncharacterised conserved protein UCP012318 RD04_RS07290 IPR009078 Ferritin-like superfamily RD04_RS07290 IPR007402 Protein of unknown function DUF455 RD04_RS07295 IPR031304 Transglycosylase SLT domain 2 RD04_RS07295 IPR023346 Lysozyme-like domain superfamily RD04_RS07295 IPR011757 Lytic transglycosylase MltB RD04_RS07310 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS07310 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD04_RS07310 IPR011991 ArsR-like helix-turn-helix domain RD04_RS07310 IPR000485 AsnC-type HTH domain RD04_RS07310 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD04_RS07310 IPR019888 Transcription regulator AsnC-type RD04_RS07310 IPR011008 Dimeric alpha-beta barrel RD04_RS07310 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS07320 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC RD04_RS07320 IPR035929 CoaB-like superfamily RD04_RS07320 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal RD04_RS07320 IPR036551 Flavin prenyltransferase-like RD04_RS07320 IPR003382 Flavoprotein RD04_RS07325 IPR001872 Peptidase A8, signal peptidase II RD04_RS07330 IPR010663 Zinc finger, FPG/IleRS-type RD04_RS07330 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RD04_RS07330 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RD04_RS07330 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS07330 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RD04_RS07330 IPR002301 Isoleucine-tRNA ligase RD04_RS07330 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain RD04_RS07330 IPR002300 Aminoacyl-tRNA synthetase, class Ia RD04_RS07330 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RD04_RS07330 IPR023585 Isoleucine-tRNA ligase, type 1 RD04_RS07335 IPR023468 Riboflavin kinase RD04_RS07335 IPR002606 Riboflavin kinase, bacterial RD04_RS07335 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic RD04_RS07335 IPR023465 Riboflavin kinase domain superfamily RD04_RS07335 IPR015864 FAD synthetase RD04_RS07335 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS07340 IPR006027 NusB/RsmB/TIM44 RD04_RS07340 IPR023267 RNA (C5-cytosine) methyltransferase RD04_RS07340 IPR035926 NusB-like superfamily RD04_RS07340 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type RD04_RS07340 IPR004573 rRNA small subunit methyltransferase B RD04_RS07340 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site RD04_RS07340 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS07360 IPR000212 DNA helicase, UvrD/REP type RD04_RS07360 IPR014017 UvrD-like DNA helicase, C-terminal RD04_RS07360 IPR005753 DNA helicase, ATP-dependent, UvrD type RD04_RS07360 IPR013986 DExx box DNA helicase domain superfamily RD04_RS07360 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07360 IPR034739 UvrD/AddA helicase, N-terminal RD04_RS07360 IPR014016 UvrD-like helicase, ATP-binding domain RD04_RS07365 IPR012910 TonB-dependent receptor, plug domain RD04_RS07365 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS07365 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS07370 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07370 IPR017871 ABC transporter, conserved site RD04_RS07370 IPR003593 AAA+ ATPase domain RD04_RS07370 IPR032781 ABC-transporter extension domain RD04_RS07370 IPR003439 ABC transporter-like RD04_RS07375 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase RD04_RS07375 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RD04_RS07375 IPR004556 Methyltransferase HemK-like RD04_RS07375 IPR007848 Methyltransferase small domain RD04_RS07375 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS07380 IPR036264 Bacterial exopeptidase dimerisation domain RD04_RS07380 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria RD04_RS07380 IPR011650 Peptidase M20, dimerisation domain RD04_RS07380 IPR002933 Peptidase M20 RD04_RS07385 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 RD04_RS07385 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily RD04_RS07385 IPR018357 Hexapeptide transferase, conserved site RD04_RS07385 IPR011004 Trimeric LpxA-like superfamily RD04_RS07385 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family RD04_RS07385 IPR001451 Hexapeptide repeat RD04_RS07420 IPR011129 Cold shock domain RD04_RS07420 IPR019844 Cold-shock (CSD) domain RD04_RS07420 IPR002059 Cold-shock protein, DNA-binding RD04_RS07420 IPR012340 Nucleic acid-binding, OB-fold RD04_RS07420 IPR012156 Cold shock, CspA RD04_RS07430 IPR012156 Cold shock, CspA RD04_RS07430 IPR011129 Cold shock domain RD04_RS07430 IPR019844 Cold-shock (CSD) domain RD04_RS07430 IPR002059 Cold-shock protein, DNA-binding RD04_RS07430 IPR012340 Nucleic acid-binding, OB-fold RD04_RS07435 IPR005134 Uncharacterised protein family UPF0114 RD04_RS07435 IPR020761 Uncharacterised protein family UPF0114, bacteria RD04_RS07440 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RD04_RS07440 IPR005215 Trigger factor RD04_RS07440 IPR008880 Trigger factor, C-terminal RD04_RS07440 IPR027304 Trigger factor/SurA domain superfamily RD04_RS07440 IPR008881 Trigger factor, ribosome-binding, bacterial RD04_RS07440 IPR036611 Trigger factor ribosome-binding domain superfamily RD04_RS07440 IPR037041 Trigger factor, C-terminal domain superfamily RD04_RS07445 IPR033135 ClpP, histidine active site RD04_RS07445 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RD04_RS07445 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS07445 IPR001907 ATP-dependent Clp protease proteolytic subunit RD04_RS07450 IPR004487 Clp protease, ATP-binding subunit ClpX RD04_RS07450 IPR038366 Zinc finger, ClpX C4-type superfamily RD04_RS07450 IPR010603 Zinc finger, ClpX C4-type RD04_RS07450 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07450 IPR003593 AAA+ ATPase domain RD04_RS07450 IPR019489 Clp ATPase, C-terminal RD04_RS07450 IPR003959 ATPase, AAA-type, core RD04_RS07455 IPR008269 Peptidase S16, Lon proteolytic domain RD04_RS07455 IPR003593 AAA+ ATPase domain RD04_RS07455 IPR015947 PUA-like superfamily RD04_RS07455 IPR008268 Peptidase S16, active site RD04_RS07455 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS07455 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07455 IPR003111 Lon, substrate-binding domain RD04_RS07455 IPR027065 Lon protease RD04_RS07455 IPR003959 ATPase, AAA-type, core RD04_RS07455 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS07455 IPR004815 Lon protease, bacterial/eukaryotic-type RD04_RS07455 IPR027543 Lon protease, bacterial RD04_RS07460 IPR005119 LysR, substrate-binding RD04_RS07460 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS07460 IPR037409 HTH-type transcriptional regulator XapR, PBP2 domain RD04_RS07460 IPR000847 Transcription regulator HTH, LysR RD04_RS07460 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS07465 IPR003673 CoA-transferase family III RD04_RS07465 IPR023606 CoA-transferase family III domain superfamily RD04_RS07470 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS07470 IPR042100 Bordetella uptake gene, domain 1 RD04_RS07470 IPR005064 Bordetella uptake gene RD04_RS07475 IPR029069 HotDog domain superfamily RD04_RS07475 IPR039375 Nodulation protein N-like RD04_RS07475 IPR002539 MaoC-like dehydratase domain RD04_RS07480 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB RD04_RS07480 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS07480 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS07480 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS07490 IPR020616 Thiolase, N-terminal RD04_RS07490 IPR020613 Thiolase, conserved site RD04_RS07490 IPR020617 Thiolase, C-terminal RD04_RS07490 IPR020610 Thiolase, active site RD04_RS07490 IPR020615 Thiolase, acyl-enzyme intermediate active site RD04_RS07490 IPR016039 Thiolase-like RD04_RS07490 IPR012805 Acetyl-CoA C-acyltransferase FadA RD04_RS07490 IPR002155 Thiolase RD04_RS07495 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS07495 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS07495 IPR036291 NAD(P)-binding domain superfamily RD04_RS07495 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RD04_RS07500 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS07500 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS07500 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS07500 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS07500 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS07500 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS07510 IPR004165 Coenzyme A transferase family I RD04_RS07510 IPR012792 3-oxoacid CoA-transferase, subunit A RD04_RS07510 IPR037171 NagB/RpiA transferase-like RD04_RS07510 IPR004163 Coenzyme A transferase binding site RD04_RS07515 IPR037171 NagB/RpiA transferase-like RD04_RS07515 IPR004164 Coenzyme A transferase active site RD04_RS07515 IPR004165 Coenzyme A transferase family I RD04_RS07515 IPR012791 3-oxoacid CoA-transferase, subunit B RD04_RS07520 IPR005064 Bordetella uptake gene RD04_RS07520 IPR042100 Bordetella uptake gene, domain 1 RD04_RS07540 IPR006315 Outer membrane autotransporter barrel RD04_RS07540 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS07540 IPR011050 Pectin lyase fold/virulence factor RD04_RS07540 IPR003992 Pertactin autotransporter RD04_RS07540 IPR005546 Autotransporter beta-domain RD04_RS07540 IPR003991 Pertactin virulence factor family RD04_RS07540 IPR036709 Autotransporter beta-domain superfamily RD04_RS07540 IPR004899 Pertactin, central region RD04_RS07545 IPR039418 LexA-like RD04_RS07545 IPR036286 LexA/Signal peptidase-like superfamily RD04_RS07545 IPR006200 Transcription regulator LexA RD04_RS07545 IPR006197 Peptidase S24, LexA-like RD04_RS07545 IPR015927 Peptidase S24/S26A/S26B/S26C RD04_RS07545 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS07545 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS07545 IPR006199 LexA repressor, DNA-binding domain RD04_RS07550 IPR004839 Aminotransferase, class I/classII RD04_RS07550 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS07550 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS07550 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS07550 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site RD04_RS07550 IPR000796 Aspartate/other aminotransferase RD04_RS07555 IPR006935 Helicase/UvrB, N-terminal RD04_RS07555 IPR001943 UVR domain RD04_RS07555 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07555 IPR036876 UVR domain superfamily RD04_RS07555 IPR004807 UvrABC system, subunit B RD04_RS07555 IPR041471 UvrB, interaction domain RD04_RS07555 IPR024759 UvrB, YAD/RRR-motif-containing domain RD04_RS07555 IPR001650 Helicase, C-terminal RD04_RS07555 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS07560 IPR017867 Protein-tyrosine phosphatase, low molecular weight RD04_RS07560 IPR023485 Phosphotyrosine protein phosphatase I RD04_RS07560 IPR036196 Phosphotyrosine protein phosphatase I superfamily RD04_RS07565 IPR000944 Transcription regulator Rrf2-type RD04_RS07565 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS07565 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS07565 IPR030489 Transcription regulator Rrf2-type, conserved site RD04_RS07565 IPR010242 Transcription factor HTH, IscR RD04_RS07570 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS07570 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS07570 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RD04_RS07570 IPR010240 Cysteine desulfurase IscS RD04_RS07570 IPR016454 Cysteine desulfurase RD04_RS07570 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS07570 IPR000192 Aminotransferase class V domain RD04_RS07575 IPR011339 ISC system FeS cluster assembly, IscU scaffold RD04_RS07575 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal RD04_RS07580 IPR000361 FeS cluster biogenesis RD04_RS07580 IPR016092 FeS cluster insertion protein RD04_RS07580 IPR011302 Iron-binding protein IscA, proteobacteria RD04_RS07580 IPR017870 FeS cluster insertion, C-terminal, conserved site RD04_RS07580 IPR035903 HesB-like domain superfamily RD04_RS07585 IPR004640 Co-chaperone Hsc20 RD04_RS07585 IPR036869 Chaperone J-domain superfamily RD04_RS07585 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain RD04_RS07585 IPR036386 HscB, C-terminal domain superfamily RD04_RS07585 IPR001623 DnaJ domain RD04_RS07590 IPR010236 ISC system FeS cluster assembly, HscA chaperone RD04_RS07590 IPR018181 Heat shock protein 70, conserved site RD04_RS07590 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily RD04_RS07590 IPR013126 Heat shock protein 70 family RD04_RS07590 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily RD04_RS07595 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria RD04_RS07595 IPR012675 Beta-grasp domain superfamily RD04_RS07595 IPR018298 Adrenodoxin, iron-sulphur binding site RD04_RS07595 IPR001055 Adrenodoxin RD04_RS07595 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS07595 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS07600 IPR036762 IscX-like superfamily RD04_RS07600 IPR007479 ISC system FeS cluster assembly, IscX RD04_RS07605 IPR004363 Methylglyoxal synthase RD04_RS07605 IPR011607 Methylglyoxal synthase-like domain RD04_RS07605 IPR036914 Methylglyoxal synthase-like domain superfamily RD04_RS07615 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS07615 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS07615 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS07615 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS07630 IPR004684 2-keto-3-deoxygluconate permease RD04_RS07635 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily RD04_RS07635 IPR042213 Nucleotide-binding, C-terminal domain superfamily RD04_RS07635 IPR010737 Four-carbon acid sugar kinase, N-terminal domain RD04_RS07635 IPR031475 Nucleotide-binding C-terminal domain RD04_RS07640 IPR005255 PdxA family RD04_RS07655 IPR003190 Aspartate decarboxylase RD04_RS07655 IPR009010 Aspartate decarboxylase-like domain superfamily RD04_RS07660 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS07660 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS07660 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RD04_RS07660 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS07660 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain RD04_RS07660 IPR012675 Beta-grasp domain superfamily RD04_RS07660 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS07660 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS07660 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS07665 IPR006076 FAD dependent oxidoreductase RD04_RS07665 IPR023080 D-amino acid dehydrogenase DadA RD04_RS07665 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS07670 IPR006059 Bacterial extracellular solute-binding protein RD04_RS07670 IPR006061 Solute-binding family 1, conserved site RD04_RS07675 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS07675 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS07675 IPR000847 Transcription regulator HTH, LysR RD04_RS07675 IPR005119 LysR, substrate-binding RD04_RS07690 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS07690 IPR000914 Solute-binding protein family 5 domain RD04_RS07690 IPR023765 Solute-binding protein family 5, conserved site RD04_RS07690 IPR039424 Solute-binding protein family 5 RD04_RS07690 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS07695 IPR035906 MetI-like superfamily RD04_RS07695 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS07700 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS07700 IPR035906 MetI-like superfamily RD04_RS07705 IPR003593 AAA+ ATPase domain RD04_RS07705 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS07705 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07705 IPR003439 ABC transporter-like RD04_RS07705 IPR017871 ABC transporter, conserved site RD04_RS07710 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit RD04_RS07710 IPR036928 Amidase signature (AS) superfamily RD04_RS07710 IPR023631 Amidase signature domain RD04_RS07710 IPR000120 Amidase RD04_RS07710 IPR020556 Amidase, conserved site RD04_RS07755 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily RD04_RS07755 IPR003156 DHHA1 domain RD04_RS07755 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria RD04_RS07755 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS07755 IPR012947 Threonyl/alanyl tRNA synthetase, SAD RD04_RS07755 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal RD04_RS07755 IPR002318 Alanine-tRNA ligase, class IIc RD04_RS07755 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily RD04_RS07755 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain RD04_RS07760 IPR036868 TusA-like domain superfamily RD04_RS07760 IPR001455 TusA-like domain RD04_RS07770 IPR000307 Ribosomal protein S16 RD04_RS07770 IPR023803 Ribosomal protein S16 domain superfamily RD04_RS07775 IPR011033 PRC-barrel-like superfamily RD04_RS07775 IPR036976 RimM, N-terminal domain superfamily RD04_RS07775 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS07775 IPR011961 16S rRNA processing protein RimM RD04_RS07775 IPR002676 RimM, N-terminal RD04_RS07780 IPR029028 Alpha/beta knot methyltransferases RD04_RS07780 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal RD04_RS07780 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD04_RS07780 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain RD04_RS07780 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria RD04_RS07785 IPR000192 Aminotransferase class V domain RD04_RS07785 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS07785 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS07785 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS07785 IPR010970 Cysteine desulfurase, SufS RD04_RS07785 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RD04_RS07800 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS07800 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS07800 IPR005467 Histidine kinase domain RD04_RS07800 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS07800 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS07800 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS07800 IPR003660 HAMP domain RD04_RS07800 IPR013727 Two-component sensor kinase, N-terminal RD04_RS07805 IPR001789 Signal transduction response regulator, receiver domain RD04_RS07805 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS07805 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS07805 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS07805 IPR011006 CheY-like superfamily RD04_RS07805 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS07815 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily RD04_RS07815 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RD04_RS07815 IPR002300 Aminoacyl-tRNA synthetase, class Ia RD04_RS07815 IPR033705 Valyl tRNA synthetase, anticodon-binding domain RD04_RS07815 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RD04_RS07815 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS07815 IPR002303 Valine-tRNA ligase RD04_RS07815 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RD04_RS07815 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm RD04_RS07815 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm RD04_RS07815 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RD04_RS07820 IPR023005 Nucleoside diphosphate kinase, active site RD04_RS07820 IPR036850 Nucleoside diphosphate kinase-like domain superfamily RD04_RS07820 IPR034907 Nucleoside diphosphate kinase-like domain RD04_RS07820 IPR001564 Nucleoside diphosphate kinase RD04_RS07825 IPR027492 Dual-specificity RNA methyltransferase RlmN RD04_RS07825 IPR007197 Radical SAM RD04_RS07825 IPR040072 Methyltransferase (Class A) RD04_RS07825 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr RD04_RS07825 IPR013785 Aldolase-type TIM barrel RD04_RS07835 IPR011005 Dihydropteroate synthase-like RD04_RS07835 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial RD04_RS07835 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type RD04_RS07840 IPR006195 Aminoacyl-tRNA synthetase, class II RD04_RS07840 IPR004154 Anticodon-binding RD04_RS07840 IPR036621 Anticodon-binding domain superfamily RD04_RS07840 IPR015807 Histidine-tRNA ligase RD04_RS07840 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain RD04_RS07840 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit RD04_RS07840 IPR033656 Histidyl-anticodon-binding RD04_RS07845 IPR026039 Uncharacterised protein family UPF0070 RD04_RS07845 IPR011990 Tetratricopeptide-like helical domain superfamily RD04_RS07845 IPR018704 Tetratricopeptide repeat-like domain RD04_RS07850 IPR002372 Pyrrolo-quinoline quinone repeat RD04_RS07850 IPR015943 WD40/YVTN repeat-like-containing domain superfamily RD04_RS07850 IPR017687 Outer membrane protein assembly factor BamB RD04_RS07850 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD04_RS07850 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RD04_RS07855 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07855 IPR015946 K homology domain-like, alpha/beta RD04_RS07855 IPR006073 GTP binding domain RD04_RS07855 IPR016484 GTP-binding protein EngA RD04_RS07855 IPR032859 GTPase Der, C-terminal KH-domain-like RD04_RS07855 IPR003593 AAA+ ATPase domain RD04_RS07855 IPR005225 Small GTP-binding protein domain RD04_RS07855 IPR031166 EngA-type guanine nucleotide-binding (G) domain RD04_RS07860 IPR004839 Aminotransferase, class I/classII RD04_RS07860 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site RD04_RS07860 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS07860 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS07860 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS07860 IPR005861 Histidinol-phosphate aminotransferase family RD04_RS07865 IPR005001 RNA-binding protein Hfq RD04_RS07865 IPR010920 LSM domain superfamily RD04_RS07870 IPR016496 GTPase HflX RD04_RS07870 IPR042108 GTPase HflX, N-terminal domain superfamily RD04_RS07870 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07870 IPR006073 GTP binding domain RD04_RS07870 IPR025121 GTPase HflX, N-terminal RD04_RS07870 IPR032305 GTP-binding protein, middle domain RD04_RS07870 IPR035647 EF-G domain III/V-like RD04_RS07870 IPR030394 HflX-type guanine nucleotide-binding (G) domain RD04_RS07875 IPR001972 Stomatin family RD04_RS07875 IPR020980 Menbrane protein HflK, N-terminal RD04_RS07875 IPR036013 Band 7/SPFH domain superfamily RD04_RS07875 IPR010201 HflK RD04_RS07875 IPR001107 Band 7 domain RD04_RS07880 IPR001107 Band 7 domain RD04_RS07880 IPR036013 Band 7/SPFH domain superfamily RD04_RS07880 IPR010200 HflC RD04_RS07885 IPR004517 ATP phosphoribosyltransferase regulatory subunit RD04_RS07885 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit RD04_RS07885 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain RD04_RS07890 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07890 IPR042109 Adenylosuccinate synthetase, domain 1 RD04_RS07890 IPR033128 Adenylosuccinate synthase, active site RD04_RS07890 IPR018220 Adenylosuccinate synthase, GTP-binding site RD04_RS07890 IPR042111 Adenylosuccinate synthetase, domain 3 RD04_RS07890 IPR001114 Adenylosuccinate synthetase RD04_RS07890 IPR042110 Adenylosuccinate synthetase, domain 2 RD04_RS07895 IPR029057 Phosphoribosyltransferase-like RD04_RS07895 IPR000836 Phosphoribosyltransferase domain RD04_RS07895 IPR005904 Hypoxanthine phosphoribosyl transferase RD04_RS07900 IPR001911 Ribosomal protein S21 RD04_RS07900 IPR018278 Ribosomal protein S21, conserved site RD04_RS07900 IPR038380 Ribosomal protein S21 superfamily RD04_RS07905 IPR030846 DNA primase DnaG, bacteria RD04_RS07905 IPR013264 DNA primase, catalytic core, N-terminal RD04_RS07905 IPR034151 Bacterial DnaG primase, TOPRIM domain RD04_RS07905 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily RD04_RS07905 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RD04_RS07905 IPR006295 DNA primase, DnaG RD04_RS07905 IPR013173 DNA primase DnaG, DnaB-binding domain RD04_RS07905 IPR036977 DNA Primase, CHC2-type zinc finger RD04_RS07905 IPR002694 Zinc finger, CHC2-type RD04_RS07905 IPR019475 DNA primase, DnaB-helicase binding domain RD04_RS07905 IPR006171 TOPRIM domain RD04_RS07910 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS07910 IPR028630 RNA polymerase sigma factor RpoD RD04_RS07910 IPR012760 RNA polymerase sigma factor RpoD, C-terminal RD04_RS07910 IPR013325 RNA polymerase sigma factor, region 2 RD04_RS07910 IPR042189 Sigma-70 factor, region 1.1 superfamily RD04_RS07910 IPR007127 RNA polymerase sigma factor 70, region 1.1 RD04_RS07910 IPR007631 RNA polymerase sigma factor 70, non-essential domain RD04_RS07910 IPR013324 RNA polymerase sigma factor, region 3/4-like RD04_RS07910 IPR007630 RNA polymerase sigma-70 region 4 RD04_RS07910 IPR007624 RNA polymerase sigma-70 region 3 RD04_RS07910 IPR007627 RNA polymerase sigma-70 region 2 RD04_RS07910 IPR009042 RNA polymerase sigma-70 region 1.2 RD04_RS07910 IPR000943 RNA polymerase sigma-70 RD04_RS07910 IPR014284 RNA polymerase sigma-70 like domain RD04_RS07935 IPR002549 Transmembrane protein TqsA-like RD04_RS07940 IPR000412 ABC-2 transporter RD04_RS07940 IPR013525 ABC-2 type transporter RD04_RS07945 IPR017871 ABC transporter, conserved site RD04_RS07945 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS07945 IPR003593 AAA+ ATPase domain RD04_RS07945 IPR003439 ABC transporter-like RD04_RS07970 IPR032879 FixG, C-terminal immunoglobulin-like domain RD04_RS07970 IPR013783 Immunoglobulin-like fold RD04_RS07970 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD04_RS07970 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD04_RS07970 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG RD04_RS07975 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily RD04_RS07975 IPR036909 Cytochrome c-like domain superfamily RD04_RS07975 IPR009056 Cytochrome c-like domain RD04_RS07975 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal RD04_RS07975 IPR004678 Cytochrome c oxidase cbb3-type, subunit III RD04_RS07975 IPR008168 Cytochrome c, class IC RD04_RS08010 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS08010 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS08010 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS08010 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA RD04_RS08010 IPR005814 Aminotransferase class-III RD04_RS08015 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site RD04_RS08015 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS08015 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS08015 IPR004839 Aminotransferase, class I/classII RD04_RS08015 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type RD04_RS08015 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS08025 IPR004472 Dethiobiotin synthase BioD RD04_RS08025 IPR041698 Methyltransferase domain 25 RD04_RS08025 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS08025 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS08030 IPR022957 Uncharacterised protein family UPF0299 RD04_RS08030 IPR005538 LrgA/CidA family RD04_RS08035 IPR007300 CidB/LrgB family RD04_RS08045 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RD04_RS08045 IPR025944 Sigma-54 interaction domain, conserved site RD04_RS08045 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RD04_RS08045 IPR002078 RNA polymerase sigma factor 54 interaction domain RD04_RS08045 IPR003018 GAF domain RD04_RS08045 IPR002197 DNA binding HTH domain, Fis-type RD04_RS08045 IPR009057 Homeobox-like domain superfamily RD04_RS08045 IPR029016 GAF-like domain superfamily RD04_RS08045 IPR003593 AAA+ ATPase domain RD04_RS08045 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS08050 IPR015590 Aldehyde dehydrogenase domain RD04_RS08050 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS08050 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS08050 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS08050 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS08050 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS08065 IPR007383 Protein of unknown function DUF445 RD04_RS08070 IPR005119 LysR, substrate-binding RD04_RS08070 IPR000847 Transcription regulator HTH, LysR RD04_RS08070 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08070 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS08075 IPR003719 Phenazine biosynthesis PhzF protein RD04_RS08080 IPR009874 Protein of unknown function DUF1428 RD04_RS08080 IPR011008 Dimeric alpha-beta barrel RD04_RS08085 IPR009057 Homeobox-like domain superfamily RD04_RS08085 IPR004026 Ada DNA repair, metal-binding RD04_RS08085 IPR035451 Ada-like domain superfamily RD04_RS08085 IPR018062 HTH domain AraC-type, conserved site RD04_RS08085 IPR018060 DNA binding HTH domain, AraC-type RD04_RS08085 IPR016220 Methylphosphotriester-DNA alkyltransferase, AdaA RD04_RS08095 IPR003691 Putative fluoride ion transporter CrcB RD04_RS08095 IPR035923 TT1751-like domain superfamily RD04_RS08095 IPR005180 Domain of unknown function DUF302 RD04_RS08115 IPR011547 SLC26A/SulP transporter domain RD04_RS08115 IPR036513 STAS domain superfamily RD04_RS08115 IPR002645 STAS domain RD04_RS08115 IPR001902 SLC26A/SulP transporter RD04_RS08140 IPR039421 Type I protein exporter RD04_RS08140 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS08140 IPR017871 ABC transporter, conserved site RD04_RS08140 IPR003439 ABC transporter-like RD04_RS08140 IPR036640 ABC transporter type 1, transmembrane domain superfamily RD04_RS08140 IPR011527 ABC transporter type 1, transmembrane domain RD04_RS08140 IPR003593 AAA+ ATPase domain RD04_RS08150 IPR000182 GNAT domain RD04_RS08150 IPR016181 Acyl-CoA N-acyltransferase RD04_RS08165 IPR005829 Sugar transporter, conserved site RD04_RS08165 IPR036259 MFS transporter superfamily RD04_RS08165 IPR020846 Major facilitator superfamily domain RD04_RS08165 IPR011701 Major facilitator superfamily RD04_RS08185 IPR009594 Transcription regulator HTH, AraC, N-terminal RD04_RS08185 IPR009057 Homeobox-like domain superfamily RD04_RS08185 IPR018060 DNA binding HTH domain, AraC-type RD04_RS08195 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding RD04_RS08195 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RD04_RS08195 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD04_RS08195 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related RD04_RS08195 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS08195 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily RD04_RS08200 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RD04_RS08200 IPR002888 [2Fe-2S]-binding RD04_RS08200 IPR036884 [2Fe-2S]-binding domain superfamily RD04_RS08200 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS08200 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS08210 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS08210 IPR005119 LysR, substrate-binding RD04_RS08210 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08210 IPR000847 Transcription regulator HTH, LysR RD04_RS08235 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily RD04_RS08235 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site RD04_RS08235 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD04_RS08235 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I RD04_RS08235 IPR023753 FAD/NAD(P)-binding domain RD04_RS08235 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS08260 IPR042100 Bordetella uptake gene, domain 1 RD04_RS08260 IPR005064 Bordetella uptake gene RD04_RS08265 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel RD04_RS08265 IPR002509 NodB homology domain RD04_RS08265 IPR037950 Peptidoglycan deacetylase PgdA-like RD04_RS08275 IPR023631 Amidase signature domain RD04_RS08275 IPR036928 Amidase signature (AS) superfamily RD04_RS08275 IPR000120 Amidase RD04_RS08275 IPR020556 Amidase, conserved site RD04_RS08280 IPR000120 Amidase RD04_RS08280 IPR020556 Amidase, conserved site RD04_RS08280 IPR023631 Amidase signature domain RD04_RS08280 IPR036928 Amidase signature (AS) superfamily RD04_RS08285 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS08285 IPR036291 NAD(P)-binding domain superfamily RD04_RS08285 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS08315 IPR009050 Globin-like superfamily RD04_RS08315 IPR012292 Globin/Protoglobin RD04_RS08315 IPR001486 Truncated hemoglobin RD04_RS08335 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS08335 IPR042100 Bordetella uptake gene, domain 1 RD04_RS08335 IPR005064 Bordetella uptake gene RD04_RS08340 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS08340 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08340 IPR000847 Transcription regulator HTH, LysR RD04_RS08340 IPR005119 LysR, substrate-binding RD04_RS08345 IPR022028 Protein of unknown function DUF3604 RD04_RS08355 IPR020616 Thiolase, N-terminal RD04_RS08355 IPR002155 Thiolase RD04_RS08355 IPR016039 Thiolase-like RD04_RS08355 IPR020615 Thiolase, acyl-enzyme intermediate active site RD04_RS08355 IPR020610 Thiolase, active site RD04_RS08355 IPR020613 Thiolase, conserved site RD04_RS08355 IPR020617 Thiolase, C-terminal RD04_RS08360 IPR028154 AMP-dependent ligase, C-terminal RD04_RS08360 IPR011880 Phenylacetate-CoA ligase RD04_RS08360 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS08360 IPR000873 AMP-dependent synthetase/ligase RD04_RS08365 IPR029058 Alpha/Beta hydrolase fold RD04_RS08365 IPR013094 Alpha/beta hydrolase fold-3 RD04_RS08365 IPR033140 Lipase, GDXG, putative serine active site RD04_RS08365 IPR002168 Lipase, GDXG, putative histidine active site RD04_RS08370 IPR003673 CoA-transferase family III RD04_RS08370 IPR023606 CoA-transferase family III domain superfamily RD04_RS08375 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS08375 IPR018298 Adrenodoxin, iron-sulphur binding site RD04_RS08375 IPR012675 Beta-grasp domain superfamily RD04_RS08375 IPR001055 Adrenodoxin RD04_RS08375 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS08380 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS08380 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS08380 IPR036291 NAD(P)-binding domain superfamily RD04_RS08380 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RD04_RS08385 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS08385 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS08385 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS08385 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS08390 IPR000391 Ring-hydroxylating dioxygenase beta subunit RD04_RS08390 IPR032710 NTF2-like domain superfamily RD04_RS08390 IPR023712 3-phenylpropionate/cinnamic acid dioxygenase, beta subunit RD04_RS08395 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain RD04_RS08395 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site RD04_RS08395 IPR017639 Benzoate 1,2-dioxygenase, large subunit RD04_RS08395 IPR017941 Rieske [2Fe-2S] iron-sulphur domain RD04_RS08395 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit RD04_RS08395 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily RD04_RS08400 IPR028082 Periplasmic binding protein-like I RD04_RS08400 IPR000709 Leu/Ile/Val-binding protein RD04_RS08400 IPR028081 Leucine-binding protein domain RD04_RS08405 IPR001851 ABC transporter, permease RD04_RS08410 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal RD04_RS08410 IPR001851 ABC transporter, permease RD04_RS08425 IPR039556 ICL/PEPM domain RD04_RS08425 IPR006254 Isocitrate lyase RD04_RS08425 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site RD04_RS08425 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS08425 IPR040442 Pyruvate kinase-like domain superfamily RD04_RS08430 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 RD04_RS08430 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF RD04_RS08430 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal RD04_RS08445 IPR000462 CDP-alcohol phosphatidyltransferase RD04_RS08445 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase RD04_RS08450 IPR004791 UvrABC system, subunit C RD04_RS08450 IPR001162 UvrC family homology region RD04_RS08450 IPR038476 UvrC homology region 2 superfamily RD04_RS08450 IPR036876 UVR domain superfamily RD04_RS08450 IPR001943 UVR domain RD04_RS08450 IPR010994 RuvA domain 2-like RD04_RS08450 IPR000305 GIY-YIG endonuclease RD04_RS08450 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 RD04_RS08450 IPR035901 GIY-YIG endonuclease superfamily RD04_RS08455 IPR017853 Glycoside hydrolase superfamily RD04_RS08455 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily RD04_RS08455 IPR001764 Glycoside hydrolase, family 3, N-terminal RD04_RS08455 IPR019800 Glycoside hydrolase, family 3, active site RD04_RS08455 IPR022956 Beta-hexosaminidase, bacterial RD04_RS08460 IPR008278 4'-phosphopantetheinyl transferase domain RD04_RS08460 IPR037143 4'-phosphopantetheinyl transferase domain superfamily RD04_RS08460 IPR002582 Holo-[acyl carrier protein] synthase RD04_RS08460 IPR004568 Phosphopantetheine-protein transferase domain RD04_RS08465 IPR013785 Aldolase-type TIM barrel RD04_RS08465 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ RD04_RS08465 IPR036130 Pyridoxine 5'-phosphate synthase RD04_RS08470 IPR003423 Outer membrane efflux protein RD04_RS08470 IPR012640 Membrane lipoprotein, lipid attachment site RD04_RS08470 IPR010131 RND efflux system, outer membrane lipoprotein, NodT RD04_RS08475 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 RD04_RS08475 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD04_RS08475 IPR001036 Acriflavin resistance protein RD04_RS08480 IPR006143 RND efflux pump, membrane fusion protein RD04_RS08480 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD04_RS08500 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS08500 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS08500 IPR016462 Molybdate-dependent transcriptional regulator ModE RD04_RS08500 IPR000847 Transcription regulator HTH, LysR RD04_RS08500 IPR004606 Molybdenum-pterin binding RD04_RS08500 IPR005116 Transport-associated OB, type 1 RD04_RS08500 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08500 IPR003725 Molybdenum-binding protein ModE, N-terminal RD04_RS08505 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS08505 IPR003439 ABC transporter-like RD04_RS08505 IPR017871 ABC transporter, conserved site RD04_RS08505 IPR012693 ABC transporter, phosphonate import, PhnC RD04_RS08505 IPR003593 AAA+ ATPase domain RD04_RS08520 IPR001424 Superoxide dismutase, copper/zinc binding domain RD04_RS08520 IPR018152 Superoxide dismutase, copper/zinc, binding site RD04_RS08520 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone RD04_RS08520 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily RD04_RS08525 IPR005064 Bordetella uptake gene RD04_RS08525 IPR042100 Bordetella uptake gene, domain 1 RD04_RS08535 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS08535 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS08535 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS08535 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS08545 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS08545 IPR000485 AsnC-type HTH domain RD04_RS08545 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08545 IPR011711 GntR, C-terminal RD04_RS08545 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS08545 IPR000524 Transcription regulator HTH, GntR RD04_RS08555 IPR020616 Thiolase, N-terminal RD04_RS08555 IPR002155 Thiolase RD04_RS08555 IPR020615 Thiolase, acyl-enzyme intermediate active site RD04_RS08555 IPR020617 Thiolase, C-terminal RD04_RS08555 IPR016039 Thiolase-like RD04_RS08555 IPR020610 Thiolase, active site RD04_RS08560 IPR004370 4-oxalocrotonate tautomerase RD04_RS08560 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type RD04_RS08560 IPR014347 Tautomerase/MIF superfamily RD04_RS08565 IPR017871 ABC transporter, conserved site RD04_RS08565 IPR003439 ABC transporter-like RD04_RS08565 IPR000644 CBS domain RD04_RS08565 IPR005892 Glycine betaine transport ATP-binding subunit RD04_RS08565 IPR003593 AAA+ ATPase domain RD04_RS08565 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS08570 IPR035906 MetI-like superfamily RD04_RS08570 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS08585 IPR003333 Mycolic acid cyclopropane synthase RD04_RS08585 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS08590 IPR004812 Drug resistance transporter Bcr/CmlA subfamily RD04_RS08590 IPR004734 Multidrug resistance protein RD04_RS08590 IPR036259 MFS transporter superfamily RD04_RS08590 IPR020846 Major facilitator superfamily domain RD04_RS08590 IPR011701 Major facilitator superfamily RD04_RS08595 IPR037147 Ribosomal protein L28/L24 superfamily RD04_RS08595 IPR001383 Ribosomal protein L28 RD04_RS08595 IPR026569 Ribosomal protein L28/L24 RD04_RS08595 IPR034704 L28p-like RD04_RS08600 IPR038584 Ribosomal protein L33 superfamily RD04_RS08600 IPR011332 Zinc-binding ribosomal protein RD04_RS08600 IPR001705 Ribosomal protein L33 RD04_RS08605 IPR036513 STAS domain superfamily RD04_RS08605 IPR002645 STAS domain RD04_RS08605 IPR001902 SLC26A/SulP transporter RD04_RS08605 IPR011547 SLC26A/SulP transporter domain RD04_RS08620 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08620 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS08620 IPR023187 Transcriptional regulator MarR-type, conserved site RD04_RS08620 IPR000835 MarR-type HTH domain RD04_RS08625 IPR020846 Major facilitator superfamily domain RD04_RS08625 IPR011701 Major facilitator superfamily RD04_RS08625 IPR036259 MFS transporter superfamily RD04_RS08630 IPR015413 Methionyl/Leucyl tRNA synthetase RD04_RS08630 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RD04_RS08630 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RD04_RS08630 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RD04_RS08630 IPR002300 Aminoacyl-tRNA synthetase, class Ia RD04_RS08630 IPR002302 Leucine-tRNA ligase RD04_RS08630 IPR025709 Leucyl-tRNA synthetase, editing domain RD04_RS08630 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RD04_RS08630 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS08645 IPR015590 Aldehyde dehydrogenase domain RD04_RS08645 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site RD04_RS08645 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS08645 IPR012134 Glutamate-5-semialdehyde dehydrogenase RD04_RS08645 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS08645 IPR000965 GPR domain RD04_RS08645 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS08655 IPR036928 Amidase signature (AS) superfamily RD04_RS08655 IPR020556 Amidase, conserved site RD04_RS08655 IPR000120 Amidase RD04_RS08655 IPR023631 Amidase signature domain RD04_RS08660 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RD04_RS08660 IPR036291 NAD(P)-binding domain superfamily RD04_RS08660 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS08660 IPR026578 L-carnitine dehydrogenase RD04_RS08660 IPR013328 6-phosphogluconate dehydrogenase, domain 2 RD04_RS08660 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RD04_RS08670 IPR032710 NTF2-like domain superfamily RD04_RS08670 IPR023006 Uncharacterised protein family UPF0225 RD04_RS08705 IPR005119 LysR, substrate-binding RD04_RS08705 IPR000847 Transcription regulator HTH, LysR RD04_RS08705 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08705 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS08705 IPR037418 HTH-type transcriptional regulator TrpI, PBP2 RD04_RS08715 IPR003702 Acetyl-CoA hydrolase/transferase RD04_RS08715 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily RD04_RS08715 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain RD04_RS08715 IPR017821 Succinate CoA transferase RD04_RS08715 IPR037171 NagB/RpiA transferase-like RD04_RS08720 IPR000847 Transcription regulator HTH, LysR RD04_RS08720 IPR005119 LysR, substrate-binding RD04_RS08720 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08720 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS08735 IPR002781 Transmembrane protein TauE-like RD04_RS08740 IPR000620 EamA domain RD04_RS08765 IPR015932 Aconitase, domain 2 RD04_RS08765 IPR018136 Aconitase family, 4Fe-4S cluster binding site RD04_RS08765 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD04_RS08765 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain RD04_RS08765 IPR015929 Aconitase B, swivel RD04_RS08765 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 RD04_RS08765 IPR004406 Aconitase B RD04_RS08765 IPR036288 Aconitase B, HEAT-like domain superfamily RD04_RS08765 IPR036008 Aconitase, iron-sulfur domain RD04_RS08765 IPR015933 Aconitase B, HEAT-like domain RD04_RS08775 IPR036737 OmpA-like domain superfamily RD04_RS08775 IPR006665 OmpA-like domain RD04_RS08775 IPR006664 Outer membrane protein, bacterial RD04_RS08790 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS08790 IPR010105 TonB-dependent siderophore receptor RD04_RS08790 IPR010917 TonB-dependent receptor, conserved site RD04_RS08790 IPR010916 TonB box, conserved site RD04_RS08790 IPR030149 TonB-dependent siderophore receptor FcuA/FatA RD04_RS08790 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS08790 IPR012910 TonB-dependent receptor, plug domain RD04_RS08790 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS08790 IPR039423 TonB-dependent receptor-like RD04_RS08800 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD04_RS08800 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain RD04_RS08800 IPR036008 Aconitase, iron-sulfur domain RD04_RS08800 IPR018136 Aconitase family, 4Fe-4S cluster binding site RD04_RS08800 IPR006249 Aconitase/Iron-responsive element-binding protein 2 RD04_RS08800 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain RD04_RS08800 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 RD04_RS08805 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type RD04_RS08805 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B RD04_RS08820 IPR011768 Translation elongation factor P RD04_RS08820 IPR013852 Translation elongation factor P/YeiP, conserved site RD04_RS08820 IPR001059 Translation elongation factor P/YeiP, central RD04_RS08820 IPR013185 Translation elongation factor, KOW-like RD04_RS08820 IPR014722 Ribosomal protein L2, domain 2 RD04_RS08820 IPR020599 Translation elongation factor P/YeiP RD04_RS08820 IPR008991 Translation protein SH3-like domain superfamily RD04_RS08820 IPR012340 Nucleic acid-binding, OB-fold RD04_RS08820 IPR015365 Elongation factor P, C-terminal RD04_RS08825 IPR036909 Cytochrome c-like domain superfamily RD04_RS08825 IPR002327 Cytochrome c, class IA/ IB RD04_RS08825 IPR009056 Cytochrome c-like domain RD04_RS08835 IPR013324 RNA polymerase sigma factor, region 3/4-like RD04_RS08835 IPR013325 RNA polymerase sigma factor, region 2 RD04_RS08835 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 RD04_RS08835 IPR007627 RNA polymerase sigma-70 region 2 RD04_RS08835 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08835 IPR014284 RNA polymerase sigma-70 like domain RD04_RS08835 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site RD04_RS08835 IPR014294 RNA polymerase sigma-W, bacillaceae RD04_RS08835 IPR039425 RNA polymerase sigma-70 like RD04_RS08850 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RD04_RS08850 IPR003593 AAA+ ATPase domain RD04_RS08850 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RD04_RS08850 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS08850 IPR002197 DNA binding HTH domain, Fis-type RD04_RS08850 IPR001789 Signal transduction response regulator, receiver domain RD04_RS08850 IPR025944 Sigma-54 interaction domain, conserved site RD04_RS08850 IPR002078 RNA polymerase sigma factor 54 interaction domain RD04_RS08850 IPR011006 CheY-like superfamily RD04_RS08850 IPR009057 Homeobox-like domain superfamily RD04_RS08880 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS08880 IPR001482 Type II/IV secretion system protein RD04_RS08880 IPR022399 Helicase/secretion neighbourhood ATPase RD04_RS08890 IPR014004 Transport-associated and nodulation domain, bacteria RD04_RS08890 IPR004846 Type II/III secretion system RD04_RS08890 IPR032789 Pilus formation protein, N-terminal RD04_RS08890 IPR001775 GspD/PilQ family RD04_RS08890 IPR007055 BON domain RD04_RS08920 IPR001633 EAL domain RD04_RS08920 IPR035919 EAL domain superfamily RD04_RS08920 IPR000160 GGDEF domain RD04_RS08920 IPR005330 MHYT domain RD04_RS08920 IPR029787 Nucleotide cyclase RD04_RS08925 IPR013686 Polypeptide-transport-associated, ShlB-type RD04_RS08925 IPR005565 Haemolysin activator HlyB, C-terminal RD04_RS08925 IPR034746 POTRA domain RD04_RS08940 IPR000835 MarR-type HTH domain RD04_RS08940 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08940 IPR011991 ArsR-like helix-turn-helix domain RD04_RS08940 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS08945 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS08945 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS08945 IPR017871 ABC transporter, conserved site RD04_RS08945 IPR003439 ABC transporter-like RD04_RS08945 IPR003593 AAA+ ATPase domain RD04_RS08950 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD04_RS08950 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS08950 IPR035906 MetI-like superfamily RD04_RS08955 IPR035906 MetI-like superfamily RD04_RS08955 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS08960 IPR000914 Solute-binding protein family 5 domain RD04_RS08960 IPR023765 Solute-binding protein family 5, conserved site RD04_RS08960 IPR039424 Solute-binding protein family 5 RD04_RS08960 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS08960 IPR011980 Nickel ABC transporter, substrate-binding protein NikA RD04_RS08970 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB RD04_RS08970 IPR004488 Magnesium/cobalt transport protein CorA RD04_RS08975 IPR014016 UvrD-like helicase, ATP-binding domain RD04_RS08975 IPR013986 DExx box DNA helicase domain superfamily RD04_RS08975 IPR005753 DNA helicase, ATP-dependent, UvrD type RD04_RS08975 IPR014017 UvrD-like DNA helicase, C-terminal RD04_RS08975 IPR034739 UvrD/AddA helicase, N-terminal RD04_RS08975 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS08975 IPR000212 DNA helicase, UvrD/REP type RD04_RS08985 IPR000524 Transcription regulator HTH, GntR RD04_RS08985 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS08985 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS08985 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS08985 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS08985 IPR004839 Aminotransferase, class I/classII RD04_RS08990 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS08990 IPR004632 4-aminobutyrate aminotransferase, bacterial RD04_RS08990 IPR005814 Aminotransferase class-III RD04_RS08990 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS08990 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS08995 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS08995 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS08995 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS08995 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS08995 IPR015590 Aldehyde dehydrogenase domain RD04_RS08995 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS08995 IPR010102 Succinate semialdehyde dehydrogenase RD04_RS09000 IPR022337 Inositol monophosphatase, SuhB RD04_RS09000 IPR020583 Inositol monophosphatase, metal-binding site RD04_RS09000 IPR033942 Inositol monophosphatase RD04_RS09000 IPR020550 Inositol monophosphatase, conserved site RD04_RS09000 IPR000760 Inositol monophosphatase-like RD04_RS09005 IPR026591 Sirtuin, catalytic core small domain superfamily RD04_RS09005 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS09005 IPR003000 Sirtuin family RD04_RS09005 IPR026587 Sirtuin, class II RD04_RS09005 IPR026590 Sirtuin family, catalytic core domain RD04_RS09015 IPR011004 Trimeric LpxA-like superfamily RD04_RS09015 IPR042122 Serine acetyltransferase, N-terminal domain superfamily RD04_RS09015 IPR001451 Hexapeptide repeat RD04_RS09020 IPR035482 Phosphoglucose isomerase, SIS domain 2 RD04_RS09020 IPR035476 Phosphoglucose isomerase, SIS domain 1 RD04_RS09020 IPR001672 Phosphoglucose isomerase (PGI) RD04_RS09020 IPR018189 Phosphoglucose isomerase, conserved site RD04_RS09020 IPR023096 Phosphoglucose isomerase, C-terminal RD04_RS09025 IPR005841 Alpha-D-phosphohexomutase superfamily RD04_RS09025 IPR016066 Alpha-D-phosphohexomutase, conserved site RD04_RS09025 IPR005843 Alpha-D-phosphohexomutase, C-terminal RD04_RS09025 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily RD04_RS09025 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II RD04_RS09025 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III RD04_RS09025 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I RD04_RS09025 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III RD04_RS09045 IPR005064 Bordetella uptake gene RD04_RS09045 IPR042100 Bordetella uptake gene, domain 1 RD04_RS09055 IPR010105 TonB-dependent siderophore receptor RD04_RS09055 IPR012910 TonB-dependent receptor, plug domain RD04_RS09055 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS09055 IPR039423 TonB-dependent receptor-like RD04_RS09055 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS09055 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS09060 IPR023950 Flavohemoprotein RD04_RS09060 IPR012292 Globin/Protoglobin RD04_RS09060 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS09060 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS09060 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain RD04_RS09060 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS09060 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS09060 IPR009050 Globin-like superfamily RD04_RS09060 IPR000971 Globin RD04_RS09075 IPR036380 Isochorismatase-like superfamily RD04_RS09075 IPR000868 Isochorismatase-like RD04_RS09085 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS09085 IPR029058 Alpha/Beta hydrolase fold RD04_RS09090 IPR026286 Maleate isomerase/Arylmalonate decarboxylase RD04_RS09090 IPR028615 Maleate isomerase RD04_RS09095 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS09095 IPR002938 FAD-binding domain RD04_RS09100 IPR012675 Beta-grasp domain superfamily RD04_RS09100 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RD04_RS09100 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS09100 IPR036884 [2Fe-2S]-binding domain superfamily RD04_RS09100 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS09100 IPR002888 [2Fe-2S]-binding RD04_RS09105 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily RD04_RS09105 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD04_RS09105 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RD04_RS09105 IPR036909 Cytochrome c-like domain superfamily RD04_RS09105 IPR009056 Cytochrome c-like domain RD04_RS09105 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding RD04_RS09110 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS09110 IPR003593 AAA+ ATPase domain RD04_RS09110 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS09110 IPR003439 ABC transporter-like RD04_RS09110 IPR017871 ABC transporter, conserved site RD04_RS09115 IPR017871 ABC transporter, conserved site RD04_RS09115 IPR003439 ABC transporter-like RD04_RS09115 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS09115 IPR003593 AAA+ ATPase domain RD04_RS09115 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS09125 IPR028082 Periplasmic binding protein-like I RD04_RS09125 IPR000709 Leu/Ile/Val-binding protein RD04_RS09125 IPR028081 Leucine-binding protein domain RD04_RS09135 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS09135 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS09135 IPR000835 MarR-type HTH domain RD04_RS09155 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal RD04_RS09155 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB RD04_RS09155 IPR002509 NodB homology domain RD04_RS09155 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel RD04_RS09160 IPR001173 Glycosyltransferase 2-like RD04_RS09160 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA RD04_RS09160 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS09170 IPR013785 Aldolase-type TIM barrel RD04_RS09170 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal RD04_RS09195 IPR019898 Putative aminoacrylate peracid reductase RutC RD04_RS09195 IPR035959 RutC-like superfamily RD04_RS09195 IPR006175 YjgF/YER057c/UK114 family RD04_RS09200 IPR005064 Bordetella uptake gene RD04_RS09200 IPR042100 Bordetella uptake gene, domain 1 RD04_RS09205 IPR003781 CoA-binding RD04_RS09205 IPR036291 NAD(P)-binding domain superfamily RD04_RS09210 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS09210 IPR005471 Transcription regulator IclR, N-terminal RD04_RS09210 IPR014757 Transcription regulator IclR, C-terminal RD04_RS09210 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR RD04_RS09210 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS09210 IPR029016 GAF-like domain superfamily RD04_RS09215 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal RD04_RS09215 IPR023753 FAD/NAD(P)-binding domain RD04_RS09215 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS09215 IPR013785 Aldolase-type TIM barrel RD04_RS09225 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS09225 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS09225 IPR017871 ABC transporter, conserved site RD04_RS09225 IPR013611 Transport-associated OB, type 2 RD04_RS09225 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit RD04_RS09225 IPR003439 ABC transporter-like RD04_RS09225 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA RD04_RS09225 IPR003593 AAA+ ATPase domain RD04_RS09230 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS09230 IPR035906 MetI-like superfamily RD04_RS09230 IPR006469 NifC-like ABC-type porter RD04_RS09230 IPR011867 Molybdate ABC transporter, permease protein RD04_RS09235 IPR035906 MetI-like superfamily RD04_RS09235 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS09255 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS09255 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS09255 IPR000847 Transcription regulator HTH, LysR RD04_RS09255 IPR005119 LysR, substrate-binding RD04_RS09255 IPR037414 Transcriptional activator protein LysR, PBP2 domain RD04_RS09265 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS09265 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS09265 IPR036291 NAD(P)-binding domain superfamily RD04_RS09270 IPR002811 Aspartate dehydrogenase RD04_RS09270 IPR020626 L-aspartate dehydrogenase, prokaryotic RD04_RS09270 IPR011182 L-aspartate dehydrogenase RD04_RS09270 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding RD04_RS09270 IPR036291 NAD(P)-binding domain superfamily RD04_RS09275 IPR029058 Alpha/Beta hydrolase fold RD04_RS09275 IPR019913 Pyrimidine utilisation protein RutD RD04_RS09275 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS09280 IPR004682 TRAP transporter solute receptor, DctP family RD04_RS09280 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS09280 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS09285 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD04_RS09285 IPR004681 TRAP transporter large membrane protein DctM RD04_RS09290 IPR007387 TRAP transporter, small membrane protein DctQ RD04_RS09290 IPR004681 TRAP transporter large membrane protein DctM RD04_RS09290 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD04_RS09295 IPR013328 6-phosphogluconate dehydrogenase, domain 2 RD04_RS09295 IPR026578 L-carnitine dehydrogenase RD04_RS09295 IPR036291 NAD(P)-binding domain superfamily RD04_RS09295 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RD04_RS09295 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RD04_RS09295 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS09320 IPR005260 Aspartate kinase, monofunctional class RD04_RS09320 IPR018042 Aspartate kinase, conserved site RD04_RS09320 IPR001341 Aspartate kinase RD04_RS09320 IPR036393 Acetylglutamate kinase-like superfamily RD04_RS09320 IPR027795 CASTOR, ACT domain RD04_RS09320 IPR002912 ACT domain RD04_RS09320 IPR001048 Aspartate/glutamate/uridylate kinase RD04_RS09320 IPR041740 Aspartokinase catalytic domain RD04_RS09325 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RD04_RS09325 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS09325 IPR012094 tRNA(Ile)-lysidine synthase RD04_RS09325 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain RD04_RS09325 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal RD04_RS09335 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS09335 IPR001095 Acetyl-CoA carboxylase, alpha subunit RD04_RS09335 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal RD04_RS09340 IPR035451 Ada-like domain superfamily RD04_RS09340 IPR011257 DNA glycosylase RD04_RS09340 IPR003265 HhH-GPD domain RD04_RS09340 IPR009057 Homeobox-like domain superfamily RD04_RS09340 IPR018060 DNA binding HTH domain, AraC-type RD04_RS09340 IPR018062 HTH domain AraC-type, conserved site RD04_RS09340 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RD04_RS09340 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RD04_RS09340 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily RD04_RS09340 IPR004026 Ada DNA repair, metal-binding RD04_RS09345 IPR015803 Cysteine-tRNA ligase RD04_RS09345 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR RD04_RS09345 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase RD04_RS09345 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS09345 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RD04_RS09345 IPR032678 tRNA synthetases class I, catalytic domain RD04_RS09355 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site RD04_RS09355 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase RD04_RS09355 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain RD04_RS09355 IPR029000 Cyclophilin-like domain superfamily RD04_RS09360 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type RD04_RS09360 IPR010138 UDP-2,3-diacylglucosamine hydrolase RD04_RS09365 IPR003824 Undecaprenyl-diphosphatase UppP RD04_RS09370 IPR000644 CBS domain RD04_RS09370 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS09370 IPR016169 FAD-binding, type PCMH, subdomain 2 RD04_RS09370 IPR005496 Integral membrane protein TerC RD04_RS09370 IPR005170 Transporter-associated domain RD04_RS09375 IPR020550 Inositol monophosphatase, conserved site RD04_RS09375 IPR022337 Inositol monophosphatase, SuhB RD04_RS09375 IPR020583 Inositol monophosphatase, metal-binding site RD04_RS09375 IPR000760 Inositol monophosphatase-like RD04_RS09375 IPR033942 Inositol monophosphatase RD04_RS09380 IPR004384 RNA methyltransferase TrmJ/LasT RD04_RS09380 IPR001537 tRNA/rRNA methyltransferase, SpoU type RD04_RS09380 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD04_RS09380 IPR029028 Alpha/beta knot methyltransferases RD04_RS09385 IPR005064 Bordetella uptake gene RD04_RS09385 IPR042100 Bordetella uptake gene, domain 1 RD04_RS09395 IPR008910 Conserved TM helix RD04_RS09395 IPR006686 Mechanosensitive ion channel MscS, conserved site RD04_RS09395 IPR023408 Mechanosensitive ion channel MscS domain superfamily RD04_RS09395 IPR010920 LSM domain superfamily RD04_RS09395 IPR006685 Mechanosensitive ion channel MscS RD04_RS09395 IPR011066 Mechanosensitive ion channel MscS, C-terminal RD04_RS09395 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 RD04_RS09410 IPR002821 Hydantoinase A/oxoprolinase RD04_RS09410 IPR008040 Hydantoinaseoxoprolinase, N-terminal RD04_RS09420 IPR005119 LysR, substrate-binding RD04_RS09420 IPR000847 Transcription regulator HTH, LysR RD04_RS09420 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS09420 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS09445 IPR004682 TRAP transporter solute receptor, DctP family RD04_RS09445 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS09445 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS09460 IPR027282 Two partner secretion pathway transporter RD04_RS09460 IPR035251 ShlB, POTRA domain RD04_RS09460 IPR034746 POTRA domain RD04_RS09460 IPR013686 Polypeptide-transport-associated, ShlB-type RD04_RS09460 IPR005565 Haemolysin activator HlyB, C-terminal RD04_RS09465 IPR000259 Fimbrial-type adhesion domain RD04_RS09465 IPR036937 Fimbrial-type adhesion domain superfamily RD04_RS09465 IPR008966 Adhesion domain superfamily RD04_RS09470 IPR025949 PapC-like, C-terminal domain RD04_RS09470 IPR042186 Outer membrane usher protein FimD, plug domain RD04_RS09470 IPR018030 Fimbrial membrane usher, conserved site RD04_RS09470 IPR025885 PapC, N-terminal domain RD04_RS09470 IPR037224 PapC, N-terminal domain superfamily RD04_RS09470 IPR000015 Outer membrane usher protein RD04_RS09475 IPR013783 Immunoglobulin-like fold RD04_RS09475 IPR008962 PapD-like superfamily RD04_RS09475 IPR001829 Pili assembly chaperone, bacterial RD04_RS09475 IPR016147 Pili assembly chaperone, N-terminal RD04_RS09475 IPR016148 Pili assembly chaperone, C-terminal RD04_RS09475 IPR018046 Pili assembly chaperone, conserved site RD04_RS09475 IPR036316 Pili assembly chaperone, C-terminal domain superfamily RD04_RS09480 IPR036937 Fimbrial-type adhesion domain superfamily RD04_RS09480 IPR008966 Adhesion domain superfamily RD04_RS09480 IPR039458 FimA-like RD04_RS09485 IPR008619 Filamentous haemagglutinin repeat RD04_RS09485 IPR011050 Pectin lyase fold/virulence factor RD04_RS09485 IPR024973 ESPR domain RD04_RS09485 IPR008638 Filamentous haemagglutinin, N-terminal RD04_RS09485 IPR012334 Pectin lyase fold RD04_RS09485 IPR025157 Hemagglutinin repeat RD04_RS09490 IPR000792 Transcription regulator LuxR, C-terminal RD04_RS09490 IPR001789 Signal transduction response regulator, receiver domain RD04_RS09490 IPR011006 CheY-like superfamily RD04_RS09495 IPR000700 PAS-associated, C-terminal RD04_RS09495 IPR035965 PAS domain superfamily RD04_RS09495 IPR000014 PAS domain RD04_RS09495 IPR036641 HPT domain superfamily RD04_RS09495 IPR005467 Histidine kinase domain RD04_RS09495 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS09495 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS09495 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS09495 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS09495 IPR011006 CheY-like superfamily RD04_RS09495 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS09495 IPR013767 PAS fold RD04_RS09495 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS09495 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RD04_RS09495 IPR001789 Signal transduction response regulator, receiver domain RD04_RS09505 IPR038021 Putative hydro-lyase RD04_RS09505 IPR009906 D-glutamate cyclase RD04_RS09505 IPR016938 Uncharacterised protein family UPF0317 RD04_RS09510 IPR036928 Amidase signature (AS) superfamily RD04_RS09510 IPR000120 Amidase RD04_RS09510 IPR023631 Amidase signature domain RD04_RS09530 IPR007438 Protein of unknown function DUF488 RD04_RS09540 IPR000524 Transcription regulator HTH, GntR RD04_RS09540 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS09540 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS09540 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS09540 IPR011711 GntR, C-terminal RD04_RS09545 IPR007387 TRAP transporter, small membrane protein DctQ RD04_RS09545 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS09545 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS09545 IPR004682 TRAP transporter solute receptor, DctP family RD04_RS09545 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS09555 IPR004681 TRAP transporter large membrane protein DctM RD04_RS09555 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD04_RS09555 IPR007387 TRAP transporter, small membrane protein DctQ RD04_RS09565 IPR012846 Acetolactate synthase, large subunit, biosynthetic RD04_RS09565 IPR039368 Acetolactate synthase large subunit, TPP binding domain RD04_RS09565 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS09565 IPR029061 Thiamin diphosphate-binding fold RD04_RS09565 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RD04_RS09565 IPR000399 TPP-binding enzyme, conserved site RD04_RS09565 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RD04_RS09565 IPR012000 Thiamine pyrophosphate enzyme, central domain RD04_RS09570 IPR011650 Peptidase M20, dimerisation domain RD04_RS09570 IPR010158 Amidase, carbamoylase-type RD04_RS09570 IPR036264 Bacterial exopeptidase dimerisation domain RD04_RS09570 IPR002933 Peptidase M20 RD04_RS09575 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS09575 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS09575 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS09575 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS09575 IPR015590 Aldehyde dehydrogenase domain RD04_RS09575 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS09580 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain RD04_RS09580 IPR014362 Glutamate dehydrogenase RD04_RS09580 IPR036291 NAD(P)-binding domain superfamily RD04_RS09580 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase RD04_RS09580 IPR033524 Leu/Phe/Val dehydrogenases active site RD04_RS09580 IPR033922 NAD(P) binding domain of glutamate dehydrogenase RD04_RS09580 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal RD04_RS09585 IPR020855 Ureohydrolase, manganese-binding site RD04_RS09585 IPR023696 Ureohydrolase domain superfamily RD04_RS09585 IPR006035 Ureohydrolase RD04_RS09585 IPR005923 Formiminoglutamase RD04_RS09590 IPR003593 AAA+ ATPase domain RD04_RS09590 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type RD04_RS09590 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS09590 IPR017871 ABC transporter, conserved site RD04_RS09590 IPR003439 ABC transporter-like RD04_RS09600 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter RD04_RS09600 IPR001320 Ionotropic glutamate receptor RD04_RS09600 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS09600 IPR018313 Solute-binding protein family 3, conserved site RD04_RS09615 IPR001130 TatD family RD04_RS09615 IPR032466 Metal-dependent hydrolase RD04_RS09615 IPR015991 Uncharacterised hydrolase TatD-type RD04_RS09615 IPR018228 Deoxyribonuclease, TatD-related, conserved site RD04_RS09620 IPR018228 Deoxyribonuclease, TatD-related, conserved site RD04_RS09620 IPR015991 Uncharacterised hydrolase TatD-type RD04_RS09620 IPR032466 Metal-dependent hydrolase RD04_RS09620 IPR001130 TatD family RD04_RS09625 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS09625 IPR012763 DNA polymerase III, subunit gamma/ tau RD04_RS09625 IPR022754 DNA polymerase III, gamma subunit, domain III RD04_RS09625 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RD04_RS09625 IPR001270 ClpA/B family RD04_RS09625 IPR003593 AAA+ ATPase domain RD04_RS09630 IPR039430 Thymidylate kinase-like domain RD04_RS09630 IPR018094 Thymidylate kinase RD04_RS09630 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS09635 IPR003770 Endolytic murein transglycosylase RD04_RS09640 IPR023758 tRNA-modifying protein YgfZ RD04_RS09640 IPR006222 Aminomethyltransferase, folate-binding domain RD04_RS09640 IPR017703 YgfZ/GcvT conserved site RD04_RS09640 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RD04_RS09655 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS09655 IPR006076 FAD dependent oxidoreductase RD04_RS09655 IPR023080 D-amino acid dehydrogenase DadA RD04_RS09660 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS09660 IPR023761 Transcriptional repressor HTH, NsrR RD04_RS09660 IPR000944 Transcription regulator Rrf2-type RD04_RS09660 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS09665 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS09665 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS09665 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain RD04_RS09665 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS09665 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS09665 IPR023950 Flavohemoprotein RD04_RS09665 IPR012292 Globin/Protoglobin RD04_RS09665 IPR000971 Globin RD04_RS09665 IPR009050 Globin-like superfamily RD04_RS09680 IPR000182 GNAT domain RD04_RS09680 IPR016181 Acyl-CoA N-acyltransferase RD04_RS09680 IPR012772 L-2,4-diaminobutyric acid acetyltransferase RD04_RS09685 IPR023187 Transcriptional regulator MarR-type, conserved site RD04_RS09685 IPR000835 MarR-type HTH domain RD04_RS09685 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS09685 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS09695 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS09695 IPR005814 Aminotransferase class-III RD04_RS09695 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS09695 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS09700 IPR011852 TRAP transporter solute receptor, TAXI family RD04_RS09720 IPR036709 Autotransporter beta-domain superfamily RD04_RS09720 IPR006315 Outer membrane autotransporter barrel RD04_RS09720 IPR005546 Autotransporter beta-domain RD04_RS09720 IPR011050 Pectin lyase fold/virulence factor RD04_RS09720 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS09730 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS09730 IPR027379 Cardiolipin synthase N-terminal RD04_RS09730 IPR025202 Phospholipase D-like domain RD04_RS09730 IPR001736 Phospholipase D/Transphosphatidylase RD04_RS09730 IPR022924 Cardiolipin synthase RD04_RS09730 IPR030874 Cardiolipin synthase, Firmicutes-type RD04_RS09735 IPR003658 Anti-sigma factor antagonist RD04_RS09735 IPR036513 STAS domain superfamily RD04_RS09735 IPR002645 STAS domain RD04_RS09740 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS09740 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS09745 IPR011079 Alanine racemase, C-terminal RD04_RS09745 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site RD04_RS09745 IPR001608 Alanine racemase, N-terminal RD04_RS09745 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RD04_RS09745 IPR000821 Alanine racemase RD04_RS09745 IPR029066 PLP-binding barrel RD04_RS09755 IPR003660 HAMP domain RD04_RS09755 IPR036457 PPM-type phosphatase domain superfamily RD04_RS09755 IPR001932 PPM-type phosphatase domain RD04_RS09780 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS09780 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 RD04_RS09780 IPR013324 RNA polymerase sigma factor, region 3/4-like RD04_RS09780 IPR007627 RNA polymerase sigma-70 region 2 RD04_RS09780 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site RD04_RS09780 IPR039425 RNA polymerase sigma-70 like RD04_RS09780 IPR014286 RNA polymerase sigma-70 RpoE type RD04_RS09780 IPR014284 RNA polymerase sigma-70 like domain RD04_RS09780 IPR013325 RNA polymerase sigma factor, region 2 RD04_RS09785 IPR003522 Type III secretion system outer membrane pore YscC/HrcC RD04_RS09785 IPR004845 Type II secretion system GspD, conserved site RD04_RS09785 IPR004846 Type II/III secretion system RD04_RS09785 IPR038591 NolW-like superfamily RD04_RS09785 IPR005644 NolW-like RD04_RS09795 IPR006135 Type III secretion system substrate exporter RD04_RS09795 IPR029025 Type III secretion system substrate exporter, C-terminal RD04_RS09795 IPR006307 Type III exporter system, secretion apparatus protein BsaZ RD04_RS09800 IPR006304 Type III secretion protein SpaR/YscT RD04_RS09800 IPR002010 Type III secretion system inner membrane R protein RD04_RS09805 IPR006306 Type III secretion protein HrpO RD04_RS09805 IPR002191 Bacterial export protein family 3 RD04_RS09810 IPR005838 Type III secretion system inner membrane P protein RD04_RS09810 IPR005773 Yop virulence translocation protein R RD04_RS09815 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO RD04_RS09815 IPR001543 Surface presentation of antigen (SpoA) RD04_RS09815 IPR036429 SpoA-like superfamily RD04_RS09815 IPR003283 Type III secretion system outer membrane, SpaO RD04_RS09830 IPR005714 ATPase, type III secretion system, FliI/YscN RD04_RS09830 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RD04_RS09830 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain RD04_RS09830 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RD04_RS09830 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS09830 IPR013380 ATPase, type III secretion system, H+-transporting RD04_RS09830 IPR003593 AAA+ ATPase domain RD04_RS09830 IPR040627 T3SS EscN ATPase, C-terminal RD04_RS09835 IPR012842 Type III secretion system HrpE/YscL RD04_RS09835 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RD04_RS09845 IPR006182 Secretory protein YscJ/FliF RD04_RS09845 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ RD04_RS09910 IPR042196 FHIPEP, domain 4 RD04_RS09910 IPR042194 FHIPEP, domain 1 RD04_RS09910 IPR042193 FHIPEP, domain 3 RD04_RS09910 IPR025505 FHIPEP conserved site RD04_RS09910 IPR006302 Type III secretion protein HrcV RD04_RS09910 IPR001712 Type III secretion system FHIPEP RD04_RS09940 IPR018151 Transcription elongation factor, GreA/GreB, conserved site RD04_RS09940 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal RD04_RS09940 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily RD04_RS09940 IPR006359 Transcription elongation factor GreA RD04_RS09940 IPR028624 Transcription elongation factor GreA/GreB RD04_RS09940 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal RD04_RS09940 IPR023459 Transcription elongation factor GreA/GreB family RD04_RS09940 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily RD04_RS09945 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RD04_RS09945 IPR003660 HAMP domain RD04_RS09945 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily RD04_RS09945 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site RD04_RS09945 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding RD04_RS09945 IPR004090 Chemotaxis methyl-accepting receptor RD04_RS09950 IPR006043 Xanthine/uracil/vitamin C permease RD04_RS09950 IPR006042 Xanthine/uracil permease RD04_RS09950 IPR019918 Pyrimidine permease RutG, predicted RD04_RS09970 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS09970 IPR023753 FAD/NAD(P)-binding domain RD04_RS09970 IPR022890 Ferredoxin--NADP reductase, type 2 RD04_RS09975 IPR026045 Ferric binding protein RD04_RS09980 IPR036412 HAD-like superfamily RD04_RS09980 IPR006439 HAD hydrolase, subfamily IA RD04_RS09980 IPR041492 Haloacid dehalogenase-like hydrolase RD04_RS09980 IPR006323 Phosphonoacetaldehyde hydrolase RD04_RS09980 IPR023214 HAD superfamily RD04_RS09980 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RD04_RS09985 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS09985 IPR035906 MetI-like superfamily RD04_RS09990 IPR003593 AAA+ ATPase domain RD04_RS09990 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal RD04_RS09990 IPR013611 Transport-associated OB, type 2 RD04_RS09990 IPR003439 ABC transporter-like RD04_RS09990 IPR017871 ABC transporter, conserved site RD04_RS09990 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 RD04_RS09990 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS09990 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS09995 IPR005119 LysR, substrate-binding RD04_RS09995 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS09995 IPR000847 Transcription regulator HTH, LysR RD04_RS09995 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS10005 IPR001763 Rhodanese-like domain RD04_RS10005 IPR036873 Rhodanese-like domain superfamily RD04_RS10015 IPR022919 Peptidase M48, protease HtpX, putative RD04_RS10015 IPR001915 Peptidase M48 RD04_RS10020 IPR011032 GroES-like superfamily RD04_RS10020 IPR036291 NAD(P)-binding domain superfamily RD04_RS10020 IPR020843 Polyketide synthase, enoylreductase domain RD04_RS10020 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site RD04_RS10020 IPR013149 Alcohol dehydrogenase, C-terminal RD04_RS10020 IPR013154 Alcohol dehydrogenase, N-terminal RD04_RS10025 IPR000620 EamA domain RD04_RS10035 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS10035 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS10035 IPR000835 MarR-type HTH domain RD04_RS10045 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD04_RS10045 IPR005694 Efflux pump membrane protein RD04_RS10050 IPR004638 Drug resistance transporter EmrB-like RD04_RS10050 IPR011701 Major facilitator superfamily RD04_RS10050 IPR036259 MFS transporter superfamily RD04_RS10050 IPR020846 Major facilitator superfamily domain RD04_RS10055 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site RD04_RS10055 IPR011829 Tartrate dehydrogenase RD04_RS10055 IPR024084 Isopropylmalate dehydrogenase-like domain RD04_RS10060 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS10060 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS10060 IPR000524 Transcription regulator HTH, GntR RD04_RS10060 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS10060 IPR004839 Aminotransferase, class I/classII RD04_RS10060 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS10065 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS10065 IPR000914 Solute-binding protein family 5 domain RD04_RS10065 IPR023765 Solute-binding protein family 5, conserved site RD04_RS10065 IPR039424 Solute-binding protein family 5 RD04_RS10070 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS10070 IPR035906 MetI-like superfamily RD04_RS10075 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS10075 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD04_RS10075 IPR035906 MetI-like superfamily RD04_RS10080 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS10080 IPR003593 AAA+ ATPase domain RD04_RS10080 IPR003439 ABC transporter-like RD04_RS10080 IPR017871 ABC transporter, conserved site RD04_RS10080 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS10090 IPR005814 Aminotransferase class-III RD04_RS10090 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS10090 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS10090 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS10090 IPR004632 4-aminobutyrate aminotransferase, bacterial RD04_RS10095 IPR014710 RmlC-like jelly roll fold RD04_RS10095 IPR011051 RmlC-like cupin domain superfamily RD04_RS10095 IPR013096 Cupin 2, conserved barrel RD04_RS10100 IPR023696 Ureohydrolase domain superfamily RD04_RS10100 IPR037138 Histone deacetylase domain superfamily RD04_RS10100 IPR023801 Histone deacetylase domain RD04_RS10100 IPR000286 Histone deacetylase family RD04_RS10105 IPR036264 Bacterial exopeptidase dimerisation domain RD04_RS10105 IPR002933 Peptidase M20 RD04_RS10105 IPR011650 Peptidase M20, dimerisation domain RD04_RS10105 IPR010158 Amidase, carbamoylase-type RD04_RS10115 IPR015590 Aldehyde dehydrogenase domain RD04_RS10115 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS10115 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS10115 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS10115 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS10115 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS10120 IPR023514 Glyoxylate/hydroxypyruvate reductase A RD04_RS10120 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RD04_RS10120 IPR036291 NAD(P)-binding domain superfamily RD04_RS10120 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RD04_RS10125 IPR005814 Aminotransferase class-III RD04_RS10125 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS10125 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS10125 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS10130 IPR001463 Sodium:alanine symporter RD04_RS10135 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS10135 IPR033186 Helicase HerA-like C-terminal RD04_RS10140 IPR017856 Integrase-like, N-terminal RD04_RS10140 IPR026564 Transcriptional regulator TACO1-like, domain 3 RD04_RS10140 IPR029072 YebC-like RD04_RS10140 IPR002876 Transcriptional regulator TACO1-like RD04_RS10145 IPR020560 Phosphoribosylglycinamide synthetase, C-domain RD04_RS10145 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS10145 IPR000115 Phosphoribosylglycinamide synthetase RD04_RS10145 IPR016185 Pre-ATP-grasp domain superfamily RD04_RS10145 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal RD04_RS10145 IPR011054 Rudiment single hybrid motif RD04_RS10145 IPR011761 ATP-grasp fold RD04_RS10145 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RD04_RS10145 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily RD04_RS10150 IPR001260 Coproporphyrinogen III oxidase, aerobic RD04_RS10150 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily RD04_RS10150 IPR018375 Coproporphyrinogen III oxidase, conserved site RD04_RS10155 IPR004821 Cytidyltransferase-like domain RD04_RS10155 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS10155 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase RD04_RS10160 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RD04_RS10165 IPR003742 RNA methyltransferase RlmH RD04_RS10165 IPR029028 Alpha/beta knot methyltransferases RD04_RS10165 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD04_RS10170 IPR029001 Inosine triphosphate pyrophosphatase-like RD04_RS10170 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein RD04_RS10175 IPR011050 Pectin lyase fold/virulence factor RD04_RS10175 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS10175 IPR006315 Outer membrane autotransporter barrel RD04_RS10175 IPR036709 Autotransporter beta-domain superfamily RD04_RS10175 IPR003991 Pertactin virulence factor family RD04_RS10175 IPR004899 Pertactin, central region RD04_RS10175 IPR005546 Autotransporter beta-domain RD04_RS10215 IPR012340 Nucleic acid-binding, OB-fold RD04_RS10215 IPR022967 RNA-binding domain, S1 RD04_RS10215 IPR004659 Ribonuclease E/G RD04_RS10215 IPR003029 S1 domain RD04_RS10215 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G RD04_RS10220 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase RD04_RS10220 IPR002912 ACT domain RD04_RS10220 IPR018528 Prephenate dehydratase, conserved site RD04_RS10220 IPR001086 Prephenate dehydratase RD04_RS10230 IPR020846 Major facilitator superfamily domain RD04_RS10230 IPR036259 MFS transporter superfamily RD04_RS10230 IPR011701 Major facilitator superfamily RD04_RS10235 IPR017871 ABC transporter, conserved site RD04_RS10235 IPR003439 ABC transporter-like RD04_RS10235 IPR036640 ABC transporter type 1, transmembrane domain superfamily RD04_RS10235 IPR003593 AAA+ ATPase domain RD04_RS10235 IPR011527 ABC transporter type 1, transmembrane domain RD04_RS10235 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS10235 IPR011917 ABC transporter, lipid A export, MsbA RD04_RS10240 IPR002201 Glycosyl transferase, family 9 RD04_RS10240 IPR011910 ADP-heptose--LPS heptosyltransferase 2 RD04_RS10250 IPR005358 Putative zinc- or iron-chelating domain containing protein RD04_RS10265 IPR040423 Phosphoethanolamine transferase RD04_RS10265 IPR017850 Alkaline-phosphatase-like, core domain superfamily RD04_RS10265 IPR000917 Sulfatase, N-terminal RD04_RS10270 IPR017814 Mycothiol biosynthesis protein, MshA RD04_RS10270 IPR001296 Glycosyl transferase, family 1 RD04_RS10270 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RD04_RS10275 IPR001173 Glycosyltransferase 2-like RD04_RS10275 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS10280 IPR002509 NodB homology domain RD04_RS10280 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel RD04_RS10285 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA RD04_RS10285 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RD04_RS10285 IPR001296 Glycosyl transferase, family 1 RD04_RS10290 IPR003141 Polymerase/histidinol phosphatase, N-terminal RD04_RS10290 IPR004013 PHP domain RD04_RS10290 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type RD04_RS10290 IPR029460 DNA polymerase, helix-hairpin-helix motif RD04_RS10290 IPR040982 DNA polymerase III alpha subunit finger domain RD04_RS10290 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain RD04_RS10290 IPR004805 DNA polymerase III, alpha subunit RD04_RS10290 IPR016195 Polymerase/histidinol phosphatase-like RD04_RS10290 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain RD04_RS10300 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS10300 IPR011709 Domain of unknown function DUF1605 RD04_RS10300 IPR011545 DEAD/DEAH box helicase domain RD04_RS10300 IPR003593 AAA+ ATPase domain RD04_RS10300 IPR001650 Helicase, C-terminal RD04_RS10300 IPR007502 Helicase-associated domain RD04_RS10300 IPR024590 RNA helicase HrpA, C-terminal RD04_RS10300 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS10300 IPR010222 RNA helicase HrpA RD04_RS10305 IPR036393 Acetylglutamate kinase-like superfamily RD04_RS10305 IPR016181 Acyl-CoA N-acyltransferase RD04_RS10305 IPR001048 Aspartate/glutamate/uridylate kinase RD04_RS10305 IPR000182 GNAT domain RD04_RS10305 IPR033719 N-acetylglutamate synthase, kinase-like domain RD04_RS10305 IPR010167 Amino-acid N-acetyltransferase RD04_RS10310 IPR007457 Fe(II) trafficking protein YggX RD04_RS10310 IPR036766 Fe(II) trafficking protein YggX superfamily RD04_RS10315 IPR008475 Bacterial phospholipase C, C-terminal domain RD04_RS10315 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS10315 IPR007312 Phosphoesterase RD04_RS10315 IPR017767 Bacterial phospholipase C, phosphocholine-specific RD04_RS10315 IPR017850 Alkaline-phosphatase-like, core domain superfamily RD04_RS10320 IPR028366 Phosphate transport system protein PhoU RD04_RS10320 IPR038078 PhoU-like domain superfamily RD04_RS10320 IPR026022 PhoU domain RD04_RS10325 IPR004788 Ribose 5-phosphate isomerase, type A RD04_RS10325 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup RD04_RS10325 IPR037171 NagB/RpiA transferase-like RD04_RS10330 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS10330 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS10330 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS10330 IPR034184 Putative acyl-CoA dehydrogenase AidB RD04_RS10330 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS10330 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS10330 IPR041504 Adaptive response protein AidB, N-terminal RD04_RS10335 IPR003798 DNA recombination RmuC RD04_RS10345 IPR036995 Methylpurine-DNA glycosylase superfamily RD04_RS10345 IPR011034 Formyl transferase-like, C-terminal domain superfamily RD04_RS10345 IPR003180 Methylpurine-DNA glycosylase RD04_RS10355 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS10355 IPR035906 MetI-like superfamily RD04_RS10360 IPR035906 MetI-like superfamily RD04_RS10360 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS10365 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS10365 IPR013611 Transport-associated OB, type 2 RD04_RS10365 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit RD04_RS10365 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS10365 IPR003593 AAA+ ATPase domain RD04_RS10365 IPR003439 ABC transporter-like RD04_RS10365 IPR017871 ABC transporter, conserved site RD04_RS10370 IPR006059 Bacterial extracellular solute-binding protein RD04_RS10370 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein RD04_RS10375 IPR022826 3-deoxy-D-manno-octulosonic acid kinase RD04_RS10375 IPR011009 Protein kinase-like domain superfamily RD04_RS10385 IPR038766 Membrane component of ABC transporter, predicted RD04_RS10390 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS10390 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS10390 IPR004682 TRAP transporter solute receptor, DctP family RD04_RS10400 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD04_RS10400 IPR004681 TRAP transporter large membrane protein DctM RD04_RS10400 IPR007387 TRAP transporter, small membrane protein DctQ RD04_RS10420 IPR016143 Citrate synthase-like, small alpha subdomain RD04_RS10420 IPR019810 Citrate synthase active site RD04_RS10420 IPR016142 Citrate synthase-like, large alpha subdomain RD04_RS10420 IPR024176 Citrate synthase, bacterial-type RD04_RS10420 IPR036969 Citrate synthase superfamily RD04_RS10420 IPR010953 Citrate synthase, type I RD04_RS10420 IPR002020 Citrate synthase RD04_RS10425 IPR036714 Flavinator of succinate dehydrogenase superfamily RD04_RS10425 IPR005631 Flavinator of succinate dehydrogenase RD04_RS10430 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal RD04_RS10430 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein RD04_RS10430 IPR009051 Alpha-helical ferredoxin RD04_RS10430 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS10430 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS10430 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD04_RS10430 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD04_RS10430 IPR012675 Beta-grasp domain superfamily RD04_RS10435 IPR011281 Succinate dehydrogenase, flavoprotein subunit RD04_RS10435 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS10435 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site RD04_RS10435 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily RD04_RS10435 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal RD04_RS10435 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily RD04_RS10435 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit RD04_RS10435 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RD04_RS10440 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit RD04_RS10440 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor RD04_RS10440 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit RD04_RS10445 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit RD04_RS10445 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site RD04_RS10445 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit RD04_RS10445 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit RD04_RS10450 IPR000524 Transcription regulator HTH, GntR RD04_RS10450 IPR011663 UbiC transcription regulator-associated RD04_RS10450 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS10450 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS10450 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RD04_RS10455 IPR036291 NAD(P)-binding domain superfamily RD04_RS10455 IPR022383 Lactate/malate dehydrogenase, C-terminal RD04_RS10455 IPR001557 L-lactate/malate dehydrogenase RD04_RS10455 IPR010945 Malate dehydrogenase, type 2 RD04_RS10455 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal RD04_RS10455 IPR001236 Lactate/malate dehydrogenase, N-terminal RD04_RS10465 IPR002020 Citrate synthase RD04_RS10465 IPR016143 Citrate synthase-like, small alpha subdomain RD04_RS10465 IPR019810 Citrate synthase active site RD04_RS10465 IPR016142 Citrate synthase-like, large alpha subdomain RD04_RS10465 IPR024176 Citrate synthase, bacterial-type RD04_RS10465 IPR036969 Citrate synthase superfamily RD04_RS10465 IPR011278 2-methylcitrate synthase/citrate synthase type I RD04_RS10470 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD04_RS10470 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain RD04_RS10470 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent RD04_RS10470 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 RD04_RS10470 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain RD04_RS10470 IPR036008 Aconitase, iron-sulfur domain RD04_RS10470 IPR006249 Aconitase/Iron-responsive element-binding protein 2 RD04_RS10475 IPR007400 PrpF protein RD04_RS10475 IPR012709 2-methyl-aconitate isomerase PrpF RD04_RS10480 IPR042188 MmgE/PrpD superfamily, domain 2 RD04_RS10480 IPR012705 2-methylcitrate dehydratase PrpD RD04_RS10480 IPR036148 MmgE/PrpD superfamily RD04_RS10480 IPR042183 MmgE/PrpD superfamily, domain 1 RD04_RS10480 IPR005656 MmgE/PrpD RD04_RS10485 IPR005265 Protoporphyrinogen oxidase HemJ-like RD04_RS10490 IPR004114 THUMP domain RD04_RS10490 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS10490 IPR000241 Putative RNA methylase domain RD04_RS10490 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RD04_RS10510 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain RD04_RS10510 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS10510 IPR020845 AMP-binding, conserved site RD04_RS10510 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS10510 IPR011904 Acetate-CoA ligase RD04_RS10510 IPR000873 AMP-dependent synthetase/ligase RD04_RS10520 IPR000397 Heat shock protein Hsp33 RD04_RS10520 IPR016154 Heat shock protein Hsp33, C-terminal RD04_RS10520 IPR016153 Heat shock protein Hsp33, N-terminal RD04_RS10520 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily RD04_RS10545 IPR013026 Tetratricopeptide repeat-containing domain RD04_RS10545 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase RD04_RS10545 IPR029787 Nucleotide cyclase RD04_RS10545 IPR011990 Tetratricopeptide-like helical domain superfamily RD04_RS10545 IPR019734 Tetratricopeptide repeat RD04_RS10550 IPR023081 Cell division protein FtsB RD04_RS10550 IPR007060 Septum formation initiator FtsL/DivIC RD04_RS10555 IPR000941 Enolase RD04_RS10555 IPR020811 Enolase, N-terminal RD04_RS10555 IPR020809 Enolase, conserved site RD04_RS10555 IPR036849 Enolase-like, C-terminal domain superfamily RD04_RS10555 IPR029017 Enolase-like, N-terminal RD04_RS10555 IPR020810 Enolase, C-terminal TIM barrel domain RD04_RS10565 IPR013785 Aldolase-type TIM barrel RD04_RS10565 IPR006218 DAHP synthetase I/KDSA RD04_RS10565 IPR006269 3-deoxy-8-phosphooctulonate synthase RD04_RS10570 IPR017926 Glutamine amidotransferase RD04_RS10570 IPR029062 Class I glutamine amidotransferase-like RD04_RS10570 IPR033828 CTP synthase GATase domain RD04_RS10570 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS10570 IPR017456 CTP synthase, N-terminal RD04_RS10570 IPR004468 CTP synthase RD04_RS10580 IPR000587 Creatinase, N-terminal RD04_RS10580 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site RD04_RS10580 IPR000994 Peptidase M24 RD04_RS10580 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RD04_RS10580 IPR036005 Creatinase/aminopeptidase-like RD04_RS10590 IPR016117 ArgJ-like domain superfamily RD04_RS10590 IPR005321 Peptidase S58, DmpA RD04_RS10595 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD04_RS10595 IPR035906 MetI-like superfamily RD04_RS10595 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS10600 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS10600 IPR035906 MetI-like superfamily RD04_RS10605 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS10605 IPR039424 Solute-binding protein family 5 RD04_RS10605 IPR000914 Solute-binding protein family 5 domain RD04_RS10610 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS10610 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS10610 IPR003439 ABC transporter-like RD04_RS10610 IPR003593 AAA+ ATPase domain RD04_RS10610 IPR017871 ABC transporter, conserved site RD04_RS10615 IPR029055 Nucleophile aminohydrolases, N-terminal RD04_RS10615 IPR000246 Peptidase T2, asparaginase 2 RD04_RS10625 IPR037171 NagB/RpiA transferase-like RD04_RS10625 IPR004164 Coenzyme A transferase active site RD04_RS10625 IPR004165 Coenzyme A transferase family I RD04_RS10625 IPR012791 3-oxoacid CoA-transferase, subunit B RD04_RS10640 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS10640 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD04_RS10640 IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase RD04_RS10645 IPR005886 UDP-glucose 4-epimerase RD04_RS10645 IPR036291 NAD(P)-binding domain superfamily RD04_RS10645 IPR016040 NAD(P)-binding domain RD04_RS10660 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS10660 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase RD04_RS10660 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS10660 IPR023603 Threonine aldolase RD04_RS10660 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS10665 IPR000620 EamA domain RD04_RS10670 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS10670 IPR020845 AMP-binding, conserved site RD04_RS10670 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain RD04_RS10670 IPR000873 AMP-dependent synthetase/ligase RD04_RS10670 IPR011904 Acetate-CoA ligase RD04_RS10670 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS10680 IPR005624 Haem-degrading RD04_RS10680 IPR038084 GlcG-like domain superfamily RD04_RS10685 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain RD04_RS10685 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS10685 IPR000873 AMP-dependent synthetase/ligase RD04_RS10685 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS10685 IPR020845 AMP-binding, conserved site RD04_RS10685 IPR012694 Propionate--CoA ligase RD04_RS10690 IPR038765 Papain-like cysteine peptidase superfamily RD04_RS10690 IPR000064 Endopeptidase, NLPC/P60 domain RD04_RS10705 IPR005119 LysR, substrate-binding RD04_RS10705 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS10705 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS10705 IPR000847 Transcription regulator HTH, LysR RD04_RS10705 IPR037423 HTH-type transcriptional regulator CysB, PBP2 domain RD04_RS10710 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS10710 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS10710 IPR015590 Aldehyde dehydrogenase domain RD04_RS10710 IPR010061 Methylmalonate-semialdehyde dehydrogenase RD04_RS10710 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS10710 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS10720 IPR005119 LysR, substrate-binding RD04_RS10720 IPR000847 Transcription regulator HTH, LysR RD04_RS10720 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS10720 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS10730 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B RD04_RS10730 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal RD04_RS10730 IPR023042 Peptidase M17, leucine aminopeptidase RD04_RS10730 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal RD04_RS10735 IPR036768 DNA polymerase III subunit chi superfamily RD04_RS10735 IPR007459 DNA polymerase III chi subunit, HolC RD04_RS10745 IPR006213 Bax inhibitor 1, conserved site RD04_RS10745 IPR006214 Bax inhibitor 1-related RD04_RS10750 IPR042100 Bordetella uptake gene, domain 1 RD04_RS10750 IPR005064 Bordetella uptake gene RD04_RS10770 IPR022572 DNA replication/recombination mediator RecO, N-terminal RD04_RS10770 IPR012340 Nucleic acid-binding, OB-fold RD04_RS10770 IPR003717 Recombination protein O, RecO RD04_RS10770 IPR037278 ARFGAP/RecO-like zinc finger RD04_RS10775 IPR006073 GTP binding domain RD04_RS10775 IPR005662 GTP-binding protein Era RD04_RS10775 IPR030388 Era-type guanine nucleotide-binding (G) domain RD04_RS10775 IPR005225 Small GTP-binding protein domain RD04_RS10775 IPR004044 K Homology domain, type 2 RD04_RS10775 IPR009019 K homology domain superfamily, prokaryotic type RD04_RS10775 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS10775 IPR015946 K homology domain-like, alpha/beta RD04_RS10780 IPR000999 Ribonuclease III domain RD04_RS10780 IPR014720 Double-stranded RNA-binding domain RD04_RS10780 IPR011907 Ribonuclease III RD04_RS10780 IPR036389 Ribonuclease III, endonuclease domain superfamily RD04_RS10785 IPR000223 Peptidase S26A, signal peptidase I RD04_RS10785 IPR036286 LexA/Signal peptidase-like superfamily RD04_RS10785 IPR019533 Peptidase S26 RD04_RS10785 IPR019756 Peptidase S26A, signal peptidase I, serine active site RD04_RS10785 IPR019757 Peptidase S26A, signal peptidase I, lysine active site RD04_RS10785 IPR019758 Peptidase S26A, signal peptidase I, conserved site RD04_RS10790 IPR035647 EF-G domain III/V-like RD04_RS10790 IPR006297 Elongation factor 4 RD04_RS10790 IPR004161 Translation elongation factor EFTu-like, domain 2 RD04_RS10790 IPR000640 Elongation factor EFG, domain V-like RD04_RS10790 IPR038363 LepA, C-terminal domain superfamily RD04_RS10790 IPR013842 GTP-binding protein LepA, C-terminal RD04_RS10790 IPR035654 Elongation factor 4, domain IV RD04_RS10790 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS10790 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS10790 IPR005225 Small GTP-binding protein domain RD04_RS10790 IPR000795 Transcription factor, GTP-binding domain RD04_RS10790 IPR031157 Tr-type G domain, conserved site RD04_RS10795 IPR001478 PDZ domain RD04_RS10795 IPR036034 PDZ superfamily RD04_RS10795 IPR011782 Peptidase S1C, Do RD04_RS10795 IPR009003 Peptidase S1, PA clan RD04_RS10795 IPR001940 Peptidase S1C RD04_RS10810 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site RD04_RS10810 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS10810 IPR013324 RNA polymerase sigma factor, region 3/4-like RD04_RS10810 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 RD04_RS10810 IPR014286 RNA polymerase sigma-70 RpoE type RD04_RS10810 IPR039425 RNA polymerase sigma-70 like RD04_RS10810 IPR014284 RNA polymerase sigma-70 like domain RD04_RS10810 IPR007627 RNA polymerase sigma-70 region 2 RD04_RS10810 IPR013325 RNA polymerase sigma factor, region 2 RD04_RS10820 IPR014031 Beta-ketoacyl synthase, C-terminal RD04_RS10820 IPR018201 Beta-ketoacyl synthase, active site RD04_RS10820 IPR000794 Beta-ketoacyl synthase RD04_RS10820 IPR014030 Beta-ketoacyl synthase, N-terminal RD04_RS10820 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RD04_RS10820 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 RD04_RS10820 IPR016039 Thiolase-like RD04_RS10825 IPR006162 Phosphopantetheine attachment site RD04_RS10825 IPR036736 ACP-like superfamily RD04_RS10825 IPR003231 Acyl carrier protein (ACP) RD04_RS10825 IPR009081 Phosphopantetheine binding ACP domain RD04_RS10830 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS10830 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS10830 IPR036291 NAD(P)-binding domain superfamily RD04_RS10830 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RD04_RS10835 IPR014043 Acyl transferase RD04_RS10835 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RD04_RS10835 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type RD04_RS10835 IPR024925 Malonyl CoA-acyl carrier protein transacylase RD04_RS10835 IPR001227 Acyl transferase domain superfamily RD04_RS10835 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RD04_RS10840 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD04_RS10840 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal RD04_RS10840 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 RD04_RS10840 IPR016039 Thiolase-like RD04_RS10845 IPR003664 Fatty acid synthesis PlsX protein RD04_RS10845 IPR012281 Phospholipid biosynthesis protein, PlsX-like RD04_RS10850 IPR002677 Ribosomal protein L32p RD04_RS10850 IPR011332 Zinc-binding ribosomal protein RD04_RS10855 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria RD04_RS10855 IPR003772 Large ribosomal RNA subunit accumulation protein YceD RD04_RS10860 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein RD04_RS10860 IPR029001 Inosine triphosphate pyrophosphatase-like RD04_RS10870 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily RD04_RS10870 IPR002502 N-acetylmuramoyl-L-alanine amidase domain RD04_RS10870 IPR036366 PGBD superfamily RD04_RS10870 IPR036365 PGBD-like superfamily RD04_RS10875 IPR032692 Integral membrane protein YccS, N-terminal RD04_RS10885 IPR005583 Peroxide stress protein YaaA RD04_RS10900 IPR013785 Aldolase-type TIM barrel RD04_RS10900 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) RD04_RS10900 IPR011060 Ribulose-phosphate binding barrel RD04_RS10905 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD04_RS10905 IPR004681 TRAP transporter large membrane protein DctM RD04_RS10915 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS10915 IPR041722 Alpha-keto acid binding periplasmic protein RD04_RS10915 IPR026289 Solute binding protein, TakP-like RD04_RS10915 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS10915 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS10920 IPR020103 Pseudouridine synthase, catalytic domain superfamily RD04_RS10920 IPR001406 Pseudouridine synthase I, TruA RD04_RS10920 IPR020095 Pseudouridine synthase I, TruA, C-terminal RD04_RS10920 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain RD04_RS10930 IPR012280 Semialdehyde dehydrogenase, dimerisation domain RD04_RS10930 IPR012080 Aspartate-semialdehyde dehydrogenase RD04_RS10930 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type RD04_RS10930 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site RD04_RS10930 IPR000534 Semialdehyde dehydrogenase, NAD-binding RD04_RS10930 IPR036291 NAD(P)-binding domain superfamily RD04_RS10935 IPR004429 Isopropylmalate dehydrogenase RD04_RS10935 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site RD04_RS10935 IPR024084 Isopropylmalate dehydrogenase-like domain RD04_RS10940 IPR004431 3-isopropylmalate dehydratase, small subunit RD04_RS10940 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD04_RS10940 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain RD04_RS10940 IPR033940 3-isopropylmalate dehydratase, swivel domain RD04_RS10945 IPR018136 Aconitase family, 4Fe-4S cluster binding site RD04_RS10945 IPR004430 3-isopropylmalate dehydratase, large subunit RD04_RS10945 IPR033941 3-Isopropylmalate dehydratase, catalytic domain RD04_RS10945 IPR036008 Aconitase, iron-sulfur domain RD04_RS10945 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 RD04_RS10945 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain RD04_RS10950 IPR024370 PBP domain RD04_RS10955 IPR003439 ABC transporter-like RD04_RS10955 IPR017871 ABC transporter, conserved site RD04_RS10955 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS10955 IPR003593 AAA+ ATPase domain RD04_RS10960 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS10960 IPR035906 MetI-like superfamily RD04_RS10985 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD04_RS10985 IPR000813 7Fe ferredoxin RD04_RS10985 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD04_RS10990 IPR006443 Formate dehydrogenase-N, alpha subunit RD04_RS10990 IPR006656 Molybdopterin oxidoreductase RD04_RS10990 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain RD04_RS10990 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site RD04_RS10990 IPR006657 Molybdopterin dinucleotide-binding domain RD04_RS10990 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site RD04_RS10990 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS10990 IPR009010 Aspartate decarboxylase-like domain superfamily RD04_RS11020 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 RD04_RS11020 IPR019591 Mrp/NBP35 ATP-binding protein RD04_RS11020 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS11020 IPR000808 Mrp, conserved site RD04_RS11025 IPR025877 MobA-like NTP transferase RD04_RS11025 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS11025 IPR013482 Molybdenum cofactor guanylyltransferase RD04_RS11030 IPR036135 MoeA, N-terminal and linker domain superfamily RD04_RS11030 IPR036688 MoeA, C-terminal, domain IV superfamily RD04_RS11030 IPR005110 MoeA, N-terminal and linker domain RD04_RS11030 IPR001453 MoaB/Mog domain RD04_RS11030 IPR008284 Molybdenum cofactor biosynthesis, conserved site RD04_RS11030 IPR038987 Molybdopterin biosynthesis protein MoeA-like RD04_RS11030 IPR005111 MoeA, C-terminal, domain IV RD04_RS11030 IPR036425 MoaB/Mog-like domain superfamily RD04_RS11035 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS11035 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain RD04_RS11040 IPR011990 Tetratricopeptide-like helical domain superfamily RD04_RS11040 IPR030873 Beta-barrel assembly-enhancing protease RD04_RS11040 IPR001915 Peptidase M48 RD04_RS11045 IPR020541 Chorismate synthase, conserved site RD04_RS11045 IPR000453 Chorismate synthase RD04_RS11045 IPR035904 Chorismate synthase AroC superfamily RD04_RS11050 IPR013656 PAS fold-4 RD04_RS11050 IPR035919 EAL domain superfamily RD04_RS11050 IPR000160 GGDEF domain RD04_RS11050 IPR029787 Nucleotide cyclase RD04_RS11050 IPR001610 PAC motif RD04_RS11050 IPR000014 PAS domain RD04_RS11050 IPR000700 PAS-associated, C-terminal RD04_RS11050 IPR035965 PAS domain superfamily RD04_RS11050 IPR001633 EAL domain RD04_RS11050 IPR013655 PAS fold-3 RD04_RS11065 IPR006469 NifC-like ABC-type porter RD04_RS11065 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS11065 IPR035906 MetI-like superfamily RD04_RS11065 IPR011867 Molybdate ABC transporter, permease protein RD04_RS11070 IPR013611 Transport-associated OB, type 2 RD04_RS11070 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS11070 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS11070 IPR015853 ABC transporter, ferric cation import, FbpC RD04_RS11070 IPR017871 ABC transporter, conserved site RD04_RS11070 IPR003439 ABC transporter-like RD04_RS11070 IPR003593 AAA+ ATPase domain RD04_RS11075 IPR005119 LysR, substrate-binding RD04_RS11075 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS11075 IPR000847 Transcription regulator HTH, LysR RD04_RS11075 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS11080 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site RD04_RS11080 IPR029033 Histidine phosphatase superfamily RD04_RS11080 IPR013078 Histidine phosphatase superfamily, clade-1 RD04_RS11080 IPR023086 Phosphoglycerate mutase, GpmB, probable RD04_RS11090 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain RD04_RS11090 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily RD04_RS11090 IPR011761 ATP-grasp fold RD04_RS11090 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain RD04_RS11090 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain RD04_RS11090 IPR011607 Methylglyoxal synthase-like domain RD04_RS11090 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain RD04_RS11090 IPR016185 Pre-ATP-grasp domain superfamily RD04_RS11090 IPR006275 Carbamoyl-phosphate synthase, large subunit RD04_RS11090 IPR036914 Methylglyoxal synthase-like domain superfamily RD04_RS11095 IPR017926 Glutamine amidotransferase RD04_RS11095 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain RD04_RS11095 IPR029062 Class I glutamine amidotransferase-like RD04_RS11095 IPR006274 Carbamoyl-phosphate synthase, small subunit RD04_RS11095 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain RD04_RS11095 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily RD04_RS11100 IPR013785 Aldolase-type TIM barrel RD04_RS11100 IPR018225 Transaldolase, active site RD04_RS11100 IPR004730 Transaldolase type 1 RD04_RS11100 IPR001585 Transaldolase/Fructose-6-phosphate aldolase RD04_RS11120 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding RD04_RS11120 IPR011548 3-hydroxyisobutyrate dehydrogenase RD04_RS11120 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site RD04_RS11120 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS11120 IPR013328 6-phosphogluconate dehydrogenase, domain 2 RD04_RS11120 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain RD04_RS11120 IPR036291 NAD(P)-binding domain superfamily RD04_RS11120 IPR015815 3-hydroxyisobutyrate dehydrogenase-related RD04_RS11125 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB RD04_RS11125 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS11125 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS11125 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS11125 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS11130 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS11130 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS11130 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS11130 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS11130 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS11130 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS11130 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS11135 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RD04_RS11135 IPR005346 RnfH protein RD04_RS11135 IPR037021 RnfH superfamily RD04_RS11135 IPR033655 RelA, TGS domain RD04_RS11140 IPR005031 Coenzyme Q-binding protein COQ10, START domain RD04_RS11140 IPR023393 START-like domain superfamily RD04_RS11150 IPR023620 Small protein B RD04_RS11150 IPR000037 SsrA-binding protein RD04_RS11150 IPR020081 SsrA-binding protein, conserved site RD04_RS11155 IPR013656 PAS fold-4 RD04_RS11155 IPR000160 GGDEF domain RD04_RS11155 IPR000700 PAS-associated, C-terminal RD04_RS11155 IPR000014 PAS domain RD04_RS11155 IPR029787 Nucleotide cyclase RD04_RS11155 IPR035965 PAS domain superfamily RD04_RS11160 IPR001107 Band 7 domain RD04_RS11160 IPR001972 Stomatin family RD04_RS11160 IPR032435 Band 7, C-terminal extension RD04_RS11160 IPR036013 Band 7/SPFH domain superfamily RD04_RS11160 IPR018080 Band 7/stomatin-like, conserved site RD04_RS11175 IPR029062 Class I glutamine amidotransferase-like RD04_RS11175 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS11175 IPR001674 GMP synthase, C-terminal RD04_RS11175 IPR004739 GMP synthase, glutamine amidotransferase RD04_RS11175 IPR022955 GMP synthase RD04_RS11175 IPR017926 Glutamine amidotransferase RD04_RS11175 IPR025777 GMP synthetase ATP pyrophosphatase domain RD04_RS11180 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding RD04_RS11180 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS11180 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS11180 IPR040442 Pyruvate kinase-like domain superfamily RD04_RS11180 IPR023151 PEP-utilising enzyme, conserved site RD04_RS11180 IPR000121 PEP-utilising enzyme, C-terminal RD04_RS11180 IPR018274 PEP-utilising enzyme, active site RD04_RS11180 IPR006319 Phosphoenolpyruvate synthase RD04_RS11180 IPR008279 PEP-utilising enzyme, mobile domain RD04_RS11180 IPR036637 Phosphohistidine domain superfamily RD04_RS11185 IPR026530 Phosphoenolpyruvate synthase regulatory protein RD04_RS11185 IPR005177 Bifunctional kinase-pyrophosphorylase RD04_RS11190 IPR029064 50S ribosomal protein L30e-like RD04_RS11190 IPR001537 tRNA/rRNA methyltransferase, SpoU type RD04_RS11190 IPR013123 RNA 2-O ribose methyltransferase, substrate binding RD04_RS11190 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD04_RS11190 IPR029028 Alpha/beta knot methyltransferases RD04_RS11195 IPR022898 Ribonuclease HII RD04_RS11195 IPR001352 Ribonuclease HII/HIII RD04_RS11195 IPR024567 Ribonuclease HII/HIII domain RD04_RS11195 IPR012337 Ribonuclease H-like superfamily RD04_RS11195 IPR036397 Ribonuclease H superfamily RD04_RS11200 IPR003835 Glycosyl transferase, family 19 RD04_RS11205 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily RD04_RS11205 IPR001451 Hexapeptide repeat RD04_RS11205 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase RD04_RS11205 IPR011004 Trimeric LpxA-like superfamily RD04_RS11205 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal RD04_RS11210 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ RD04_RS11210 IPR029069 HotDog domain superfamily RD04_RS11210 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ RD04_RS11215 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region RD04_RS11215 IPR001451 Hexapeptide repeat RD04_RS11215 IPR011004 Trimeric LpxA-like superfamily RD04_RS11215 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD RD04_RS11215 IPR018357 Hexapeptide transferase, conserved site RD04_RS11220 IPR005632 Chaperone protein Skp RD04_RS11220 IPR024930 Skp domain superfamily RD04_RS11225 IPR034746 POTRA domain RD04_RS11225 IPR010827 POTRA domain, BamA/TamA-like RD04_RS11225 IPR039910 Surface antigen D15-like RD04_RS11225 IPR023707 Outer membrane protein assembly factor BamA RD04_RS11225 IPR000184 Bacterial surface antigen (D15) RD04_RS11230 IPR001478 PDZ domain RD04_RS11230 IPR008915 Peptidase M50 RD04_RS11230 IPR041489 PDZ domain 6 RD04_RS11230 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase RD04_RS11230 IPR036034 PDZ superfamily RD04_RS11235 IPR036291 NAD(P)-binding domain superfamily RD04_RS11235 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal RD04_RS11235 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal RD04_RS11235 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase RD04_RS11235 IPR036169 DXP reductoisomerase, C-terminal domain superfamily RD04_RS11235 IPR026877 DXP reductoisomerase C-terminal domain RD04_RS11240 IPR000374 Phosphatidate cytidylyltransferase RD04_RS11245 IPR001441 Decaprenyl diphosphate synthase-like RD04_RS11245 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site RD04_RS11245 IPR036424 Decaprenyl diphosphate synthase-like superfamily RD04_RS11250 IPR002661 Ribosome recycling factor RD04_RS11250 IPR036191 RRF superfamily RD04_RS11250 IPR023584 Ribosome recycling factor domain RD04_RS11255 IPR036393 Acetylglutamate kinase-like superfamily RD04_RS11255 IPR011817 Uridylate kinase RD04_RS11255 IPR001048 Aspartate/glutamate/uridylate kinase RD04_RS11255 IPR015963 Uridylate kinase, bacteria RD04_RS11260 IPR036402 Elongation factor Ts, dimerisation domain superfamily RD04_RS11260 IPR001816 Translation elongation factor EFTs/EF1B RD04_RS11260 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation RD04_RS11260 IPR009060 UBA-like superfamily RD04_RS11260 IPR018101 Translation elongation factor Ts, conserved site RD04_RS11265 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily RD04_RS11265 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid RD04_RS11265 IPR018130 Ribosomal protein S2, conserved site RD04_RS11265 IPR001865 Ribosomal protein S2 RD04_RS11270 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 RD04_RS11270 IPR001714 Peptidase M24, methionine aminopeptidase RD04_RS11270 IPR000994 Peptidase M24 RD04_RS11270 IPR036005 Creatinase/aminopeptidase-like RD04_RS11275 IPR002912 ACT domain RD04_RS11275 IPR003607 HD/PDEase domain RD04_RS11275 IPR006674 HD domain RD04_RS11275 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase RD04_RS11275 IPR002934 Polymerase, nucleotidyl transferase domain RD04_RS11275 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme RD04_RS11290 IPR029055 Nucleophile aminohydrolases, N-terminal RD04_RS11290 IPR000836 Phosphoribosyltransferase domain RD04_RS11290 IPR017932 Glutamine amidotransferase type 2 domain RD04_RS11290 IPR005854 Amidophosphoribosyltransferase RD04_RS11290 IPR035584 Amidophosphoribosyltransferase, N-terminal RD04_RS11290 IPR029057 Phosphoribosyltransferase-like RD04_RS11305 IPR001645 Folylpolyglutamate synthetase RD04_RS11305 IPR013221 Mur ligase, central RD04_RS11305 IPR018109 Folylpolyglutamate synthetase, conserved site RD04_RS11305 IPR036565 Mur-like, catalytic domain superfamily RD04_RS11305 IPR036615 Mur ligase, C-terminal domain superfamily RD04_RS11305 IPR004101 Mur ligase, C-terminal RD04_RS11315 IPR010809 Flagellar hook-associated protein 2, C-terminal RD04_RS11315 IPR003481 Flagellar hook-associated protein 2, N-terminal RD04_RS11315 IPR040026 Flagellar hook-associated protein 2 RD04_RS11315 IPR010810 Flagellin hook, IN motif RD04_RS11320 IPR036584 Flagellar protein FliS superfamily RD04_RS11320 IPR003713 Flagellar protein FliS RD04_RS11340 IPR006136 Flagellar biosynthetic protein FlhB RD04_RS11340 IPR006135 Type III secretion system substrate exporter RD04_RS11340 IPR029025 Type III secretion system substrate exporter, C-terminal RD04_RS11350 IPR001624 Flagellar hook-basal body complex protein FliE RD04_RS11355 IPR000067 Flagellar M-ring protein FliF RD04_RS11355 IPR006182 Secretory protein YscJ/FliF RD04_RS11355 IPR013556 Flagellar M-ring C-terminal RD04_RS11360 IPR011002 Flagellar motor switch protein FliG, alpha-helical RD04_RS11360 IPR032779 Flagellar motor switch protein FliG, middle domain RD04_RS11360 IPR023087 Flagellar motor switch protein FliG, C-terminal RD04_RS11360 IPR000090 Flagellar motor switch protein FliG RD04_RS11360 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RD04_RS11370 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS11370 IPR040627 T3SS EscN ATPase, C-terminal RD04_RS11370 IPR003593 AAA+ ATPase domain RD04_RS11370 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RD04_RS11370 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RD04_RS11370 IPR005714 ATPase, type III secretion system, FliI/YscN RD04_RS11370 IPR020005 Flagellar export ATPase FliI, clade 1 RD04_RS11370 IPR032463 ATPase, type III secretion system, FliI RD04_RS11395 IPR005503 Flagellar basal body-associated protein FliL RD04_RS11400 IPR028976 CheC-like superfamily RD04_RS11400 IPR001543 Surface presentation of antigen (SpoA) RD04_RS11400 IPR036429 SpoA-like superfamily RD04_RS11400 IPR001689 Flagellar motor switch protein FliM RD04_RS11405 IPR001543 Surface presentation of antigen (SpoA) RD04_RS11405 IPR036429 SpoA-like superfamily RD04_RS11405 IPR012826 Flagellar motor switch FliN RD04_RS11405 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb RD04_RS11405 IPR031576 Flagellar motor switch protein FliN, N-terminal RD04_RS11410 IPR022781 Flagellar biosynthesis protein, FliO RD04_RS11415 IPR005838 Type III secretion system inner membrane P protein RD04_RS11415 IPR005837 Flagellar transport protein FliP RD04_RS11420 IPR006305 Flagellar biosynthesis protein FliQ RD04_RS11420 IPR002191 Bacterial export protein family 3 RD04_RS11425 IPR002010 Type III secretion system inner membrane R protein RD04_RS11425 IPR006303 Flagellar biosynthesis protein FliR RD04_RS11435 IPR004090 Chemotaxis methyl-accepting receptor RD04_RS11435 IPR003660 HAMP domain RD04_RS11435 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RD04_RS11435 IPR001610 PAC motif RD04_RS11435 IPR035965 PAS domain superfamily RD04_RS11435 IPR000014 PAS domain RD04_RS11435 IPR013655 PAS fold-3 RD04_RS11440 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site RD04_RS11440 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding RD04_RS11440 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RD04_RS11440 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily RD04_RS11440 IPR004090 Chemotaxis methyl-accepting receptor RD04_RS11440 IPR003660 HAMP domain RD04_RS11445 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily RD04_RS11445 IPR004090 Chemotaxis methyl-accepting receptor RD04_RS11445 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site RD04_RS11445 IPR003660 HAMP domain RD04_RS11445 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RD04_RS11445 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding RD04_RS11450 IPR001029 Flagellin, D0/D1 domain RD04_RS11450 IPR013384 Flagellar hook-associated protein 3 RD04_RS11455 IPR001444 Flagellar basal body rod protein, N-terminal RD04_RS11455 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RD04_RS11455 IPR002371 Flagellar hook-associated protein 1 RD04_RS11460 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain RD04_RS11460 IPR019301 Flagellar protein FlgJ, N-terminal RD04_RS11460 IPR013377 Peptidoglycan hydrolase FlgJ RD04_RS11465 IPR001782 Flagellar P-ring protein RD04_RS11470 IPR000527 Flagellar L-ring protein RD04_RS11475 IPR019776 Flagellar basal body rod protein, conserved site RD04_RS11475 IPR012834 Flagellar basal-body rod FlgG RD04_RS11475 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RD04_RS11475 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RD04_RS11475 IPR001444 Flagellar basal body rod protein, N-terminal RD04_RS11475 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RD04_RS11480 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RD04_RS11480 IPR001444 Flagellar basal body rod protein, N-terminal RD04_RS11480 IPR019776 Flagellar basal body rod protein, conserved site RD04_RS11480 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RD04_RS11480 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RD04_RS11485 IPR019776 Flagellar basal body rod protein, conserved site RD04_RS11485 IPR037058 Flagellar hook protein FlgE superfamily RD04_RS11485 IPR011491 Flagellar hook protein FlgE RD04_RS11485 IPR001444 Flagellar basal body rod protein, N-terminal RD04_RS11485 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RD04_RS11485 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RD04_RS11485 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RD04_RS11490 IPR025963 FlgD Tudor-like domain RD04_RS11490 IPR025965 FlgD Ig-like domain RD04_RS11490 IPR005648 Flagellar hook capping protein RD04_RS11495 IPR006299 Flagellar basal-body rod protein FlgC RD04_RS11495 IPR001444 Flagellar basal body rod protein, N-terminal RD04_RS11495 IPR019776 Flagellar basal body rod protein, conserved site RD04_RS11495 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RD04_RS11500 IPR006300 Flagellar basal-body rod protein FlgB RD04_RS11500 IPR019776 Flagellar basal body rod protein, conserved site RD04_RS11500 IPR001444 Flagellar basal body rod protein, N-terminal RD04_RS11510 IPR035890 Anti-sigma-28 factor FlgM superfamily RD04_RS11510 IPR007412 Anti-sigma-28 factor, FlgM RD04_RS11510 IPR031316 Anti-sigma-28 factor FlgM, C-terminal RD04_RS11520 IPR003593 AAA+ ATPase domain RD04_RS11520 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS11520 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain RD04_RS11520 IPR020006 Flagellar biosynthesis protein FlhF RD04_RS11530 IPR029025 Type III secretion system substrate exporter, C-terminal RD04_RS11530 IPR006135 Type III secretion system substrate exporter RD04_RS11530 IPR006136 Flagellar biosynthetic protein FlhB RD04_RS11540 IPR018313 Solute-binding protein family 3, conserved site RD04_RS11540 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS11545 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS11545 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS11545 IPR035906 MetI-like superfamily RD04_RS11550 IPR017871 ABC transporter, conserved site RD04_RS11550 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS11550 IPR003593 AAA+ ATPase domain RD04_RS11550 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type RD04_RS11550 IPR003439 ABC transporter-like RD04_RS11560 IPR013332 Ketopantoate reductase, N-terminal domain RD04_RS11560 IPR036291 NAD(P)-binding domain superfamily RD04_RS11560 IPR013752 Ketopantoate reductase, C-terminal domain RD04_RS11560 IPR003710 Ketopantoate reductase ApbA/PanE RD04_RS11560 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS11560 IPR013328 6-phosphogluconate dehydrogenase, domain 2 RD04_RS11565 IPR029017 Enolase-like, N-terminal RD04_RS11565 IPR034611 D-tartrate dehydratase RD04_RS11565 IPR029065 Enolase C-terminal domain-like RD04_RS11565 IPR036849 Enolase-like, C-terminal domain superfamily RD04_RS11565 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RD04_RS11565 IPR034593 Mandelate racemase-like RD04_RS11570 IPR042100 Bordetella uptake gene, domain 1 RD04_RS11570 IPR005064 Bordetella uptake gene RD04_RS11580 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD04_RS11580 IPR004431 3-isopropylmalate dehydratase, small subunit RD04_RS11580 IPR033940 3-isopropylmalate dehydratase, swivel domain RD04_RS11580 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain RD04_RS11585 IPR006377 Catabolite control protein A RD04_RS11585 IPR010982 Lambda repressor-like, DNA-binding domain superfamily RD04_RS11585 IPR028082 Periplasmic binding protein-like I RD04_RS11585 IPR000843 LacI-type HTH domain RD04_RS11590 IPR005064 Bordetella uptake gene RD04_RS11590 IPR042100 Bordetella uptake gene, domain 1 RD04_RS11595 IPR023606 CoA-transferase family III domain superfamily RD04_RS11595 IPR003673 CoA-transferase family III RD04_RS11605 IPR042100 Bordetella uptake gene, domain 1 RD04_RS11605 IPR005064 Bordetella uptake gene RD04_RS11610 IPR011761 ATP-grasp fold RD04_RS11610 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS11610 IPR003781 CoA-binding RD04_RS11610 IPR036291 NAD(P)-binding domain superfamily RD04_RS11610 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RD04_RS11610 IPR016102 Succinyl-CoA synthetase-like RD04_RS11615 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS11615 IPR011711 GntR, C-terminal RD04_RS11615 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS11615 IPR000524 Transcription regulator HTH, GntR RD04_RS11615 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS11620 IPR040442 Pyruvate kinase-like domain superfamily RD04_RS11620 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS11620 IPR011206 Citrate lyase beta subunit-like RD04_RS11620 IPR005000 HpcH/HpaI aldolase/citrate lyase domain RD04_RS11630 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS11630 IPR000847 Transcription regulator HTH, LysR RD04_RS11630 IPR005119 LysR, substrate-binding RD04_RS11630 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS11640 IPR011050 Pectin lyase fold/virulence factor RD04_RS11640 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS11640 IPR013425 Autotransporter-associated beta strand repeat RD04_RS11640 IPR036709 Autotransporter beta-domain superfamily RD04_RS11640 IPR005546 Autotransporter beta-domain RD04_RS11640 IPR006315 Outer membrane autotransporter barrel RD04_RS11650 IPR005149 Transcription regulator PadR, N-terminal RD04_RS11650 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS11650 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS11655 IPR005135 Endonuclease/exonuclease/phosphatase RD04_RS11655 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RD04_RS11660 IPR001736 Phospholipase D/Transphosphatidylase RD04_RS11660 IPR025202 Phospholipase D-like domain RD04_RS11660 IPR030872 Cardiolipin synthase B RD04_RS11675 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RD04_RS11705 IPR017853 Glycoside hydrolase superfamily RD04_RS11705 IPR013780 Glycosyl hydrolase, all-beta RD04_RS11705 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RD04_RS11705 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S RD04_RS11705 IPR013783 Immunoglobulin-like fold RD04_RS11705 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase RD04_RS11710 IPR032091 Maltogenic Amylase, C-terminal RD04_RS11710 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RD04_RS11710 IPR012810 Trehalose synthase/alpha-amylase, N-terminal RD04_RS11710 IPR017853 Glycoside hydrolase superfamily RD04_RS11710 IPR013780 Glycosyl hydrolase, all-beta RD04_RS11715 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RD04_RS11715 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB RD04_RS11715 IPR037439 1,4-alpha-glucan-branching enzyme RD04_RS11715 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta RD04_RS11715 IPR013783 Immunoglobulin-like fold RD04_RS11715 IPR004193 Glycoside hydrolase, family 13, N-terminal RD04_RS11715 IPR013780 Glycosyl hydrolase, all-beta RD04_RS11715 IPR017853 Glycoside hydrolase superfamily RD04_RS11715 IPR014756 Immunoglobulin E-set RD04_RS11720 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RD04_RS11720 IPR017853 Glycoside hydrolase superfamily RD04_RS11720 IPR013783 Immunoglobulin-like fold RD04_RS11720 IPR014756 Immunoglobulin E-set RD04_RS11720 IPR013780 Glycosyl hydrolase, all-beta RD04_RS11720 IPR011837 Glycogen debranching enzyme, GlgX type RD04_RS11720 IPR004193 Glycoside hydrolase, family 13, N-terminal RD04_RS11725 IPR014756 Immunoglobulin E-set RD04_RS11725 IPR012768 Malto-oligosyltrehalose trehalohydrolase RD04_RS11725 IPR013783 Immunoglobulin-like fold RD04_RS11725 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) RD04_RS11725 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RD04_RS11725 IPR017853 Glycoside hydrolase superfamily RD04_RS11725 IPR013780 Glycosyl hydrolase, all-beta RD04_RS11725 IPR004193 Glycoside hydrolase, family 13, N-terminal RD04_RS11735 IPR003385 Glycoside hydrolase, family 77 RD04_RS11735 IPR017853 Glycoside hydrolase superfamily RD04_RS11740 IPR012767 Maltooligosyl trehalose synthase RD04_RS11740 IPR017853 Glycoside hydrolase superfamily RD04_RS11740 IPR006047 Glycosyl hydrolase, family 13, catalytic domain RD04_RS11750 IPR029056 Ribokinase-like RD04_RS11750 IPR004625 Pyridoxine kinase RD04_RS11750 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase RD04_RS11750 IPR023479 Pyridoxine/pyridoxal/pyridoxamine kinase RD04_RS11755 IPR011078 Pyridoxal phosphate homeostasis protein RD04_RS11755 IPR029066 PLP-binding barrel RD04_RS11755 IPR001608 Alanine racemase, N-terminal RD04_RS11760 IPR000524 Transcription regulator HTH, GntR RD04_RS11760 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS11760 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS11760 IPR004839 Aminotransferase, class I/classII RD04_RS11760 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS11760 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS11760 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS11775 IPR006016 UspA RD04_RS11775 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS11775 IPR006015 Universal stress protein A family RD04_RS11780 IPR020471 Aldo/keto reductase RD04_RS11780 IPR023210 NADP-dependent oxidoreductase domain RD04_RS11780 IPR036812 NADP-dependent oxidoreductase domain superfamily RD04_RS11790 IPR027268 Peptidase M4/M1, CTD superfamily RD04_RS11790 IPR001570 Peptidase M4, C-terminal RD04_RS11790 IPR013856 Peptidase M4 domain RD04_RS11790 IPR032475 Protealysin, N-terminal propeptide RD04_RS11790 IPR023612 Peptidase M4 RD04_RS11795 IPR032808 DoxX family RD04_RS11815 IPR036249 Thioredoxin-like superfamily RD04_RS11815 IPR024706 Peroxiredoxin, AhpC-type RD04_RS11815 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RD04_RS11815 IPR013766 Thioredoxin domain RD04_RS11820 IPR006660 Arsenate reductase-like RD04_RS11820 IPR006659 Arsenate reductase RD04_RS11820 IPR036249 Thioredoxin-like superfamily RD04_RS11825 IPR023606 CoA-transferase family III domain superfamily RD04_RS11825 IPR003673 CoA-transferase family III RD04_RS11830 IPR013026 Tetratricopeptide repeat-containing domain RD04_RS11830 IPR011990 Tetratricopeptide-like helical domain superfamily RD04_RS11830 IPR019734 Tetratricopeptide repeat RD04_RS11845 IPR000889 Glutathione peroxidase RD04_RS11845 IPR029759 Glutathione peroxidase active site RD04_RS11845 IPR029760 Glutathione peroxidase conserved site RD04_RS11845 IPR036249 Thioredoxin-like superfamily RD04_RS11850 IPR004046 Glutathione S-transferase, C-terminal RD04_RS11850 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RD04_RS11850 IPR036249 Thioredoxin-like superfamily RD04_RS11850 IPR010987 Glutathione S-transferase, C-terminal-like RD04_RS11850 IPR004045 Glutathione S-transferase, N-terminal RD04_RS11865 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain RD04_RS11865 IPR019491 Lipoate protein ligase, C-terminal RD04_RS11865 IPR004562 Lipoyltransferase/lipoate-protein ligase RD04_RS11880 IPR003817 Phosphatidylserine decarboxylase-related RD04_RS11880 IPR033177 Phosphatidylserine decarboxylase RD04_RS11880 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 RD04_RS11885 IPR013785 Aldolase-type TIM barrel RD04_RS11885 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent RD04_RS11885 IPR037396 FMN hydroxy acid dehydrogenase domain RD04_RS11885 IPR000262 FMN-dependent dehydrogenase RD04_RS11885 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site RD04_RS11890 IPR004872 Lipoprotein NlpA family RD04_RS11895 IPR014914 RES domain RD04_RS11905 IPR006696 Protein of unknown function DUF423 RD04_RS11925 IPR000709 Leu/Ile/Val-binding protein RD04_RS11925 IPR028082 Periplasmic binding protein-like I RD04_RS11925 IPR028081 Leucine-binding protein domain RD04_RS11930 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC RD04_RS11930 IPR003593 AAA+ ATPase domain RD04_RS11930 IPR003439 ABC transporter-like RD04_RS11930 IPR017871 ABC transporter, conserved site RD04_RS11930 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS11930 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS11930 IPR040582 MalK, OB fold domain RD04_RS11935 IPR030165 sn-Glycerol-3-phosphate transport system permease protein UgpE RD04_RS11935 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS11935 IPR035906 MetI-like superfamily RD04_RS11940 IPR035906 MetI-like superfamily RD04_RS11940 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS11945 IPR006059 Bacterial extracellular solute-binding protein RD04_RS11945 IPR006061 Solute-binding family 1, conserved site RD04_RS11950 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS11950 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain RD04_RS11950 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RD04_RS11950 IPR000304 Pyrroline-5-carboxylate reductase RD04_RS11950 IPR036291 NAD(P)-binding domain superfamily RD04_RS11955 IPR003744 Queuosine precursor transporter RD04_RS11965 IPR000709 Leu/Ile/Val-binding protein RD04_RS11965 IPR028082 Periplasmic binding protein-like I RD04_RS11965 IPR028081 Leucine-binding protein domain RD04_RS11970 IPR001851 ABC transporter, permease RD04_RS11975 IPR001851 ABC transporter, permease RD04_RS11975 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal RD04_RS11980 IPR017871 ABC transporter, conserved site RD04_RS11980 IPR003593 AAA+ ATPase domain RD04_RS11980 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS11980 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS11980 IPR003439 ABC transporter-like RD04_RS11985 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS11985 IPR017871 ABC transporter, conserved site RD04_RS11985 IPR003439 ABC transporter-like RD04_RS11985 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS11985 IPR003593 AAA+ ATPase domain RD04_RS11990 IPR001920 Asp/Glu racemase RD04_RS11990 IPR015942 Asp/Glu/hydantoin racemase RD04_RS11990 IPR018187 Asp/Glu racemase, active site 1 RD04_RS11990 IPR004391 Glutamate racemase RD04_RS11990 IPR033134 Asp/Glu racemase, active site 2 RD04_RS12005 IPR000620 EamA domain RD04_RS12015 IPR007349 Domain of unknown function DUF418 RD04_RS12020 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative RD04_RS12020 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily RD04_RS12020 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal RD04_RS12020 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RD04_RS12020 IPR013760 DNA topoisomerase, type IIA-like domain superfamily RD04_RS12020 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta RD04_RS12030 IPR006171 TOPRIM domain RD04_RS12030 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 RD04_RS12030 IPR018522 DNA topoisomerase, type IIA, conserved site RD04_RS12030 IPR001241 DNA topoisomerase, type IIA RD04_RS12030 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative RD04_RS12030 IPR013760 DNA topoisomerase, type IIA-like domain superfamily RD04_RS12030 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal RD04_RS12030 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS12030 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS12030 IPR002288 DNA gyrase B subunit, C-terminal RD04_RS12030 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS12030 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS12035 IPR013766 Thioredoxin domain RD04_RS12035 IPR017937 Thioredoxin, conserved site RD04_RS12035 IPR036249 Thioredoxin-like superfamily RD04_RS12035 IPR005746 Thioredoxin RD04_RS12040 IPR041703 Transcription termination factor Rho, ATP binding domain RD04_RS12040 IPR011112 Rho termination factor, N-terminal RD04_RS12040 IPR036269 Rho termination factor, N-terminal domain superfamily RD04_RS12040 IPR011113 Rho termination factor, RNA-binding domain RD04_RS12040 IPR004665 Transcription termination factor Rho RD04_RS12040 IPR003593 AAA+ ATPase domain RD04_RS12040 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RD04_RS12040 IPR012340 Nucleic acid-binding, OB-fold RD04_RS12040 IPR011129 Cold shock domain RD04_RS12040 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12050 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase RD04_RS12050 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain RD04_RS12050 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme RD04_RS12055 IPR003828 Epoxyqueuosine reductase QueH RD04_RS12060 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form RD04_RS12060 IPR029009 Allosteric substrate binding domain superfamily RD04_RS12060 IPR005131 Serine dehydratase beta chain RD04_RS12060 IPR005130 Serine dehydratase-like, alpha subunit RD04_RS12065 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein RD04_RS12065 IPR003841 Sodium-dependent phosphate transport protein RD04_RS12070 IPR029058 Alpha/Beta hydrolase fold RD04_RS12070 IPR002925 Dienelactone hydrolase RD04_RS12080 IPR002421 5'-3' exonuclease, N-terminal RD04_RS12080 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal RD04_RS12080 IPR002562 3'-5' exonuclease domain RD04_RS12080 IPR029060 PIN-like domain superfamily RD04_RS12080 IPR012337 Ribonuclease H-like superfamily RD04_RS12080 IPR008918 Helix-hairpin-helix motif, class 2 RD04_RS12080 IPR036397 Ribonuclease H superfamily RD04_RS12080 IPR002298 DNA polymerase A RD04_RS12080 IPR018320 DNA polymerase 1 RD04_RS12080 IPR019760 DNA-directed DNA polymerase, family A, conserved site RD04_RS12080 IPR036279 5'-3' exonuclease, C-terminal domain superfamily RD04_RS12080 IPR020045 DNA polymerase I-like, H3TH domain RD04_RS12080 IPR001098 DNA-directed DNA polymerase, family A, palm domain RD04_RS12085 IPR031100 LOG family RD04_RS12085 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RD04_RS12100 IPR035651 BipA, domain V RD04_RS12100 IPR000640 Elongation factor EFG, domain V-like RD04_RS12100 IPR006298 GTP-binding protein TypA RD04_RS12100 IPR000795 Transcription factor, GTP-binding domain RD04_RS12100 IPR005225 Small GTP-binding protein domain RD04_RS12100 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12100 IPR042116 GTP-binding protein TypA/BipA, C-terminal RD04_RS12100 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS12100 IPR035647 EF-G domain III/V-like RD04_RS12100 IPR004161 Translation elongation factor EFTu-like, domain 2 RD04_RS12100 IPR031157 Tr-type G domain, conserved site RD04_RS12105 IPR020103 Pseudouridine synthase, catalytic domain superfamily RD04_RS12105 IPR032819 tRNA pseudouridylate synthase B, C-terminal RD04_RS12105 IPR014780 tRNA pseudouridine synthase II, TruB RD04_RS12105 IPR002501 Pseudouridine synthase II, N-terminal RD04_RS12110 IPR023799 Ribosome-binding factor A domain superfamily RD04_RS12110 IPR000238 Ribosome-binding factor A RD04_RS12110 IPR015946 K homology domain-like, alpha/beta RD04_RS12115 IPR009061 Putative DNA-binding domain superfamily RD04_RS12115 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12115 IPR006847 Translation initiation factor IF-2, N-terminal RD04_RS12115 IPR000178 Translation initiation factor aIF-2, bacterial-like RD04_RS12115 IPR013575 Initiation factor 2 associated domain, bacterial RD04_RS12115 IPR000795 Transcription factor, GTP-binding domain RD04_RS12115 IPR005225 Small GTP-binding protein domain RD04_RS12115 IPR023115 Translation initiation factor IF- 2, domain 3 RD04_RS12115 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS12115 IPR036925 Translation initiation factor IF-2, domain 3 superfamily RD04_RS12115 IPR015760 Translation initiation factor IF- 2 RD04_RS12120 IPR022967 RNA-binding domain, S1 RD04_RS12120 IPR015946 K homology domain-like, alpha/beta RD04_RS12120 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical RD04_RS12120 IPR036555 NusA, N-terminal domain superfamily RD04_RS12120 IPR012340 Nucleic acid-binding, OB-fold RD04_RS12120 IPR013735 Transcription factor NusA, N-terminal RD04_RS12120 IPR009019 K homology domain superfamily, prokaryotic type RD04_RS12120 IPR010214 Transcription termination factor NusA, C-terminal duplication RD04_RS12120 IPR004087 K Homology domain RD04_RS12120 IPR025249 KH domain, NusA-like RD04_RS12120 IPR003029 S1 domain RD04_RS12120 IPR030842 Transcription termination/antitermination protein NusA, bacterial RD04_RS12120 IPR010213 Transcription termination factor NusA RD04_RS12125 IPR003728 Ribosome maturation factor RimP RD04_RS12125 IPR028998 Ribosome maturation factor RimP, C-terminal RD04_RS12125 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily RD04_RS12125 IPR028989 Ribosome maturation factor RimP, N-terminal RD04_RS12125 IPR035956 RimP, N-terminal domain superfamily RD04_RS12130 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site RD04_RS12130 IPR036986 RNA-binding S4 domain superfamily RD04_RS12130 IPR006145 Pseudouridine synthase, RsuA/RluA RD04_RS12130 IPR020103 Pseudouridine synthase, catalytic domain superfamily RD04_RS12130 IPR002942 RNA-binding S4 domain RD04_RS12130 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F RD04_RS12135 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS12135 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS12135 IPR005234 Chromosome segregation/condensation protein ScpB RD04_RS12145 IPR000847 Transcription regulator HTH, LysR RD04_RS12145 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS12145 IPR005119 LysR, substrate-binding RD04_RS12145 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS12150 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE RD04_RS12150 IPR029479 Nitroreductase RD04_RS12150 IPR000415 Nitroreductase-like RD04_RS12155 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RD04_RS12155 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RD04_RS12155 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12155 IPR036627 CobW-like, C-terminal domain superfamily RD04_RS12175 IPR034333 Glutathione S-transferases, class Zeta , N-terminal RD04_RS12175 IPR010987 Glutathione S-transferase, C-terminal-like RD04_RS12175 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RD04_RS12175 IPR040079 Glutathione Transferase family RD04_RS12175 IPR004045 Glutathione S-transferase, N-terminal RD04_RS12175 IPR004046 Glutathione S-transferase, C-terminal RD04_RS12175 IPR005955 Glutathione S-transferases, class Zeta RD04_RS12175 IPR034330 Glutathione S-transferases, class Zeta , C-terminal RD04_RS12175 IPR036249 Thioredoxin-like superfamily RD04_RS12180 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase RD04_RS12185 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RD04_RS12190 IPR010994 RuvA domain 2-like RD04_RS12190 IPR025657 RadC-like JAB domain RD04_RS12190 IPR037518 MPN domain RD04_RS12190 IPR001405 Uncharacterised protein family UPF0758 RD04_RS12195 IPR007325 Kynurenine formamidase/cyclase-like RD04_RS12195 IPR017484 Kynurenine formamidase, bacteria RD04_RS12195 IPR037175 Kynurenine formamidase superfamily RD04_RS12200 IPR004981 Tryptophan 2,3-dioxygenase RD04_RS12200 IPR037217 Tryptophan/Indoleamine 2,3-dioxygenase-like RD04_RS12200 IPR017485 Tryptophan 2,3-dioxygenase, bacterial RD04_RS12205 IPR042105 Ribosomal protein L31 superfamily RD04_RS12205 IPR034704 L28p-like RD04_RS12205 IPR002150 Ribosomal protein L31 RD04_RS12205 IPR027493 Ribosomal protein L31 type B RD04_RS12215 IPR002528 Multi antimicrobial extrusion protein RD04_RS12230 IPR003593 AAA+ ATPase domain RD04_RS12230 IPR004504 DNA repair protein RadA RD04_RS12230 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS12230 IPR041166 LapB, rubredoxin metal binding domain RD04_RS12230 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain RD04_RS12230 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12230 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS12235 IPR036465 von Willebrand factor A-like domain superfamily RD04_RS12235 IPR022156 Uncharacterised protein YfbK, N-terminal RD04_RS12235 IPR002035 von Willebrand factor, type A RD04_RS12235 IPR021908 Protein of unknown function DUF3520 RD04_RS12240 IPR007627 RNA polymerase sigma-70 region 2 RD04_RS12240 IPR013325 RNA polymerase sigma factor, region 2 RD04_RS12240 IPR013324 RNA polymerase sigma factor, region 3/4-like RD04_RS12240 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS12240 IPR039425 RNA polymerase sigma-70 like RD04_RS12240 IPR014284 RNA polymerase sigma-70 like domain RD04_RS12240 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site RD04_RS12240 IPR007630 RNA polymerase sigma-70 region 4 RD04_RS12255 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RD04_RS12255 IPR036291 NAD(P)-binding domain superfamily RD04_RS12255 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS12255 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS12260 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RD04_RS12260 IPR011079 Alanine racemase, C-terminal RD04_RS12260 IPR001608 Alanine racemase, N-terminal RD04_RS12260 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site RD04_RS12260 IPR029066 PLP-binding barrel RD04_RS12260 IPR000821 Alanine racemase RD04_RS12265 IPR017827 Hydroxysqualene synthase HpnC RD04_RS12265 IPR008949 Isoprenoid synthase domain superfamily RD04_RS12265 IPR033904 Trans-Isoprenyl Diphosphate Synthases, head-to-head RD04_RS12270 IPR008949 Isoprenoid synthase domain superfamily RD04_RS12270 IPR019845 Squalene/phytoene synthase, conserved site RD04_RS12270 IPR033904 Trans-Isoprenyl Diphosphate Synthases, head-to-head RD04_RS12275 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS12275 IPR014103 Zeta-carotene desaturase RD04_RS12275 IPR002937 Amine oxidase RD04_RS12275 IPR014103 Zeta-carotene desaturase RD04_RS12275 IPR002937 Amine oxidase RD04_RS12275 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS12280 IPR003691 Putative fluoride ion transporter CrcB RD04_RS12290 IPR000412 ABC-2 transporter RD04_RS12290 IPR005981 ABC-2 type transporter, NodJ RD04_RS12290 IPR013525 ABC-2 type transporter RD04_RS12295 IPR003439 ABC transporter-like RD04_RS12295 IPR005978 Nodulation ABC transporter, NodI RD04_RS12295 IPR017871 ABC transporter, conserved site RD04_RS12295 IPR015851 ABC transporter, NodI RD04_RS12295 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12295 IPR003593 AAA+ ATPase domain RD04_RS12315 IPR003374 ApbE-like superfamily RD04_RS12315 IPR042159 Flavin-trafficking protein ApbE RD04_RS12315 IPR024932 Flavin transferase ApbE RD04_RS12320 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily RD04_RS12320 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS12320 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS12320 IPR029039 Flavoprotein-like superfamily RD04_RS12320 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS12320 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS12320 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding RD04_RS12320 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase RD04_RS12320 IPR001094 Flavodoxin-like RD04_RS12320 IPR008254 Flavodoxin/nitric oxide synthase RD04_RS12330 IPR013108 Amidohydrolase 3 RD04_RS12330 IPR011059 Metal-dependent hydrolase, composite domain superfamily RD04_RS12330 IPR023100 D-aminoacylase, insert domain superfamily RD04_RS12330 IPR032466 Metal-dependent hydrolase RD04_RS12335 IPR005119 LysR, substrate-binding RD04_RS12335 IPR000847 Transcription regulator HTH, LysR RD04_RS12335 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS12335 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS12345 IPR013785 Aldolase-type TIM barrel RD04_RS12345 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS12345 IPR009215 TIM-barrel domain, IGPS-like RD04_RS12350 IPR008322 Uncharacterised protein family UPF0261 RD04_RS12360 IPR036709 Autotransporter beta-domain superfamily RD04_RS12360 IPR006315 Outer membrane autotransporter barrel RD04_RS12360 IPR004899 Pertactin, central region RD04_RS12360 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS12360 IPR011050 Pectin lyase fold/virulence factor RD04_RS12360 IPR003992 Pertactin autotransporter RD04_RS12360 IPR005546 Autotransporter beta-domain RD04_RS12360 IPR003991 Pertactin virulence factor family RD04_RS12365 IPR036709 Autotransporter beta-domain superfamily RD04_RS12365 IPR003992 Pertactin autotransporter RD04_RS12365 IPR005546 Autotransporter beta-domain RD04_RS12365 IPR004899 Pertactin, central region RD04_RS12365 IPR003991 Pertactin virulence factor family RD04_RS12365 IPR006315 Outer membrane autotransporter barrel RD04_RS12365 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS12365 IPR011050 Pectin lyase fold/virulence factor RD04_RS12375 IPR018368 ClpA/B, conserved site 1 RD04_RS12375 IPR041546 ClpA/ClpB, AAA lid domain RD04_RS12375 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12375 IPR003593 AAA+ ATPase domain RD04_RS12375 IPR017730 Chaperonin ClpB RD04_RS12375 IPR001270 ClpA/B family RD04_RS12375 IPR003959 ATPase, AAA-type, core RD04_RS12375 IPR004176 Clp, N-terminal RD04_RS12375 IPR036628 Clp, N-terminal domain superfamily RD04_RS12375 IPR028299 ClpA/B, conserved site 2 RD04_RS12375 IPR019489 Clp ATPase, C-terminal RD04_RS12380 IPR018490 Cyclic nucleotide-binding-like RD04_RS12380 IPR000595 Cyclic nucleotide-binding domain RD04_RS12380 IPR012318 Crp-type HTH domain RD04_RS12380 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS12380 IPR014710 RmlC-like jelly roll fold RD04_RS12380 IPR018335 Transcription regulator HTH, Crp-type, conserved site RD04_RS12380 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS12395 IPR020476 NUDIX hydrolase RD04_RS12395 IPR015797 NUDIX hydrolase-like domain superfamily RD04_RS12395 IPR020084 NUDIX hydrolase, conserved site RD04_RS12395 IPR000086 NUDIX hydrolase domain RD04_RS12400 IPR024530 Putative quorum-sensing-regulated virulence factor RD04_RS12410 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 RD04_RS12410 IPR007627 RNA polymerase sigma-70 region 2 RD04_RS12410 IPR014284 RNA polymerase sigma-70 like domain RD04_RS12410 IPR032710 NTF2-like domain superfamily RD04_RS12410 IPR013325 RNA polymerase sigma factor, region 2 RD04_RS12410 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS12410 IPR013324 RNA polymerase sigma factor, region 3/4-like RD04_RS12410 IPR037401 SnoaL-like domain RD04_RS12415 IPR003779 Carboxymuconolactone decarboxylase-like RD04_RS12415 IPR004675 Alkylhydroperoxidase AhpD core RD04_RS12415 IPR029032 AhpD-like RD04_RS12445 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS12445 IPR004839 Aminotransferase, class I/classII RD04_RS12445 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS12445 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS12445 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site RD04_RS12450 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS12450 IPR018313 Solute-binding protein family 3, conserved site RD04_RS12455 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS12455 IPR035906 MetI-like superfamily RD04_RS12455 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS12460 IPR035906 MetI-like superfamily RD04_RS12460 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS12460 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS12465 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12465 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type RD04_RS12465 IPR017871 ABC transporter, conserved site RD04_RS12465 IPR003439 ABC transporter-like RD04_RS12465 IPR003593 AAA+ ATPase domain RD04_RS12485 IPR003719 Phenazine biosynthesis PhzF protein RD04_RS12495 IPR004923 Iron permease FTR1/Fip1/EfeU RD04_RS12505 IPR038482 Periplasmic metal-binding protein tp34-type superfamily RD04_RS12505 IPR018470 Periplasmic metal-binding protein Tp34-type RD04_RS12510 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR RD04_RS12510 IPR012909 PHA accumulation regulator DNA-binding, N-terminal RD04_RS12510 IPR007897 PHB accumulation regulatory RD04_RS12515 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS12515 IPR036291 NAD(P)-binding domain superfamily RD04_RS12515 IPR011283 Acetoacetyl-CoA reductase RD04_RS12515 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS12520 IPR029058 Alpha/Beta hydrolase fold RD04_RS12520 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I RD04_RS12520 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain RD04_RS12525 IPR003730 Multi-copper polyphenol oxidoreductase RD04_RS12525 IPR011324 Cytotoxic necrotizing factor-like, catalytic RD04_RS12525 IPR038371 Multi-copper polyphenol oxidoreductase superfamily RD04_RS12530 IPR020103 Pseudouridine synthase, catalytic domain superfamily RD04_RS12530 IPR002942 RNA-binding S4 domain RD04_RS12530 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site RD04_RS12530 IPR006225 Pseudouridine synthase, RluC/RluD RD04_RS12530 IPR036986 RNA-binding S4 domain superfamily RD04_RS12530 IPR006145 Pseudouridine synthase, RsuA/RluA RD04_RS12535 IPR017689 Outer membrane protein assembly factor BamD RD04_RS12535 IPR011990 Tetratricopeptide-like helical domain superfamily RD04_RS12535 IPR039565 Outer membrane lipoprotein BamD-like RD04_RS12540 IPR006935 Helicase/UvrB, N-terminal RD04_RS12540 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type RD04_RS12540 IPR006555 ATP-dependent helicase, C-terminal RD04_RS12540 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12540 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS12545 IPR012337 Ribonuclease H-like superfamily RD04_RS12545 IPR012340 Nucleic acid-binding, OB-fold RD04_RS12545 IPR010994 RuvA domain 2-like RD04_RS12545 IPR022967 RNA-binding domain, S1 RD04_RS12545 IPR023323 Tex-like domain superfamily RD04_RS12545 IPR041692 HHH domain 9 RD04_RS12545 IPR037027 YqgF/RNase H-like domain superfamily RD04_RS12545 IPR006641 YqgF/RNase H-like domain RD04_RS12545 IPR023319 Tex-like protein, HTH domain superfamily RD04_RS12545 IPR018974 Tex-like protein, N-terminal RD04_RS12545 IPR032639 Tex protein, YqgF-like domain RD04_RS12545 IPR003029 S1 domain RD04_RS12550 IPR002305 Aminoacyl-tRNA synthetase, class Ic RD04_RS12550 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS12550 IPR002306 Tryptophan-tRNA ligase RD04_RS12550 IPR024109 Tryptophan-tRNA ligase, bacterial-type RD04_RS12550 IPR036913 YegP-like superfamily RD04_RS12565 IPR036291 NAD(P)-binding domain superfamily RD04_RS12565 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RD04_RS12565 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS12565 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS12570 IPR005064 Bordetella uptake gene RD04_RS12570 IPR042100 Bordetella uptake gene, domain 1 RD04_RS12590 IPR005119 LysR, substrate-binding RD04_RS12590 IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain RD04_RS12590 IPR000847 Transcription regulator HTH, LysR RD04_RS12590 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS12590 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS12595 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RD04_RS12595 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS12595 IPR036291 NAD(P)-binding domain superfamily RD04_RS12595 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS12600 IPR030870 Cell division protein ZapE RD04_RS12600 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12600 IPR005654 ATPase, AFG1-like RD04_RS12605 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS12605 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily RD04_RS12605 IPR006258 Dihydrolipoamide dehydrogenase RD04_RS12605 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I RD04_RS12605 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD04_RS12605 IPR023753 FAD/NAD(P)-binding domain RD04_RS12605 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site RD04_RS12610 IPR036625 E3-binding domain superfamily RD04_RS12610 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily RD04_RS12610 IPR000089 Biotin/lipoyl attachment RD04_RS12610 IPR004167 Peripheral subunit-binding domain RD04_RS12610 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RD04_RS12610 IPR006255 Dihydrolipoamide succinyltransferase RD04_RS12610 IPR011053 Single hybrid motif RD04_RS12610 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain RD04_RS12615 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily RD04_RS12615 IPR001017 Dehydrogenase, E1 component RD04_RS12615 IPR029061 Thiamin diphosphate-binding fold RD04_RS12615 IPR005475 Transketolase-like, pyrimidine-binding domain RD04_RS12615 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain RD04_RS12615 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal RD04_RS12615 IPR011603 2-oxoglutarate dehydrogenase E1 component RD04_RS12625 IPR004813 Oligopeptide transporter, OPT superfamily RD04_RS12625 IPR004814 Oligopeptide transporter OPT RD04_RS12630 IPR004814 Oligopeptide transporter OPT RD04_RS12630 IPR004813 Oligopeptide transporter, OPT superfamily RD04_RS12635 IPR011008 Dimeric alpha-beta barrel RD04_RS12635 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS12635 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD04_RS12635 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS12635 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD04_RS12635 IPR000485 AsnC-type HTH domain RD04_RS12635 IPR019888 Transcription regulator AsnC-type RD04_RS12640 IPR041621 Pyruvate dehydrogenase E1 component, middle domain RD04_RS12640 IPR029061 Thiamin diphosphate-binding fold RD04_RS12640 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal RD04_RS12640 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II RD04_RS12640 IPR004660 Pyruvate dehydrogenase E1 component RD04_RS12640 IPR005474 Transketolase, N-terminal RD04_RS12645 IPR012302 Malic enzyme, NAD-binding RD04_RS12645 IPR037062 Malic enzyme, N-terminal domain superfamily RD04_RS12645 IPR036291 NAD(P)-binding domain superfamily RD04_RS12645 IPR012188 NAD(P)-dependent malic enzyme RD04_RS12645 IPR002505 Phosphate acetyl/butaryl transferase RD04_RS12645 IPR042113 Phosphate acetyltransferase, domain 1 RD04_RS12645 IPR042112 Phosphate acetyltransferase, domain 2 RD04_RS12645 IPR012301 Malic enzyme, N-terminal domain RD04_RS12645 IPR015884 Malic enzyme, conserved site RD04_RS12650 IPR008966 Adhesion domain superfamily RD04_RS12650 IPR039458 FimA-like RD04_RS12650 IPR036937 Fimbrial-type adhesion domain superfamily RD04_RS12660 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily RD04_RS12660 IPR018151 Transcription elongation factor, GreA/GreB, conserved site RD04_RS12660 IPR028624 Transcription elongation factor GreA/GreB RD04_RS12660 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal RD04_RS12660 IPR023459 Transcription elongation factor GreA/GreB family RD04_RS12660 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal RD04_RS12660 IPR006358 Transcription elongation factor GreB RD04_RS12660 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily RD04_RS12665 IPR004013 PHP domain RD04_RS12665 IPR003141 Polymerase/histidinol phosphatase, N-terminal RD04_RS12665 IPR016195 Polymerase/histidinol phosphatase-like RD04_RS12700 IPR018228 Deoxyribonuclease, TatD-related, conserved site RD04_RS12700 IPR015991 Uncharacterised hydrolase TatD-type RD04_RS12700 IPR032466 Metal-dependent hydrolase RD04_RS12700 IPR001130 TatD family RD04_RS12705 IPR003593 AAA+ ATPase domain RD04_RS12705 IPR011924 Lipoprotein releasing system, ATP-binding protein RD04_RS12705 IPR015854 ABC transporter, lipoprotein release, LolD RD04_RS12705 IPR003439 ABC transporter-like RD04_RS12705 IPR017871 ABC transporter, conserved site RD04_RS12705 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12710 IPR025857 MacB-like periplasmic core domain RD04_RS12710 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E RD04_RS12710 IPR003838 ABC transporter permease protein domain RD04_RS12720 IPR001667 DDH domain RD04_RS12720 IPR038763 DHH phosphoesterase superfamily RD04_RS12720 IPR041122 RecJ, OB domain RD04_RS12720 IPR003156 DHHA1 domain RD04_RS12720 IPR004610 Bacterial RecJ exonuclease RD04_RS12725 IPR005139 Peptide chain release factor RD04_RS12725 IPR000352 Peptide chain release factor class I RD04_RS12725 IPR004374 Peptide chain release factor 2 RD04_RS12730 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS12730 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS12730 IPR036291 NAD(P)-binding domain superfamily RD04_RS12735 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type RD04_RS12735 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) RD04_RS12735 IPR002313 Lysine-tRNA ligase, class II RD04_RS12735 IPR006195 Aminoacyl-tRNA synthetase, class II RD04_RS12735 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal RD04_RS12735 IPR012340 Nucleic acid-binding, OB-fold RD04_RS12745 IPR009057 Homeobox-like domain superfamily RD04_RS12745 IPR001647 DNA-binding HTH domain, TetR-type RD04_RS12745 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal RD04_RS12745 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RD04_RS12750 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS12750 IPR000873 AMP-dependent synthetase/ligase RD04_RS12750 IPR020845 AMP-binding, conserved site RD04_RS12755 IPR017871 ABC transporter, conserved site RD04_RS12755 IPR003593 AAA+ ATPase domain RD04_RS12755 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12755 IPR003439 ABC transporter-like RD04_RS12755 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS12775 IPR003439 ABC transporter-like RD04_RS12775 IPR003593 AAA+ ATPase domain RD04_RS12775 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12775 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS12775 IPR017871 ABC transporter, conserved site RD04_RS12785 IPR005467 Histidine kinase domain RD04_RS12785 IPR036249 Thioredoxin-like superfamily RD04_RS12785 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS12785 IPR023527 Adaptive-response sensory-kinase SasA RD04_RS12785 IPR011649 KaiB domain RD04_RS12785 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS12785 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS12785 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS12785 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS12790 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS12790 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS12790 IPR001789 Signal transduction response regulator, receiver domain RD04_RS12790 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS12790 IPR011006 CheY-like superfamily RD04_RS12795 IPR003846 Protein adenylyltransferase SelO RD04_RS12805 IPR017039 Virulence factor BrkB RD04_RS12805 IPR023679 Uncharacterised protein family UPF0761, bacterial RD04_RS12820 IPR035587 DUS-like, FMN-binding domain RD04_RS12820 IPR004653 tRNA-dihydrouridine(20/20a) synthase RD04_RS12820 IPR001269 tRNA-dihydrouridine synthase RD04_RS12820 IPR013785 Aldolase-type TIM barrel RD04_RS12820 IPR018517 tRNA-dihydrouridine synthase, conserved site RD04_RS12825 IPR011009 Protein kinase-like domain superfamily RD04_RS12825 IPR005280 Homoserine kinase, type II RD04_RS12825 IPR002575 Aminoglycoside phosphotransferase RD04_RS12845 IPR035920 YhbY-like superfamily RD04_RS12845 IPR017924 RNA-binding protein YhbY RD04_RS12845 IPR001890 RNA-binding, CRM domain RD04_RS12850 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS12850 IPR015507 Ribosomal RNA large subunit methyltransferase E RD04_RS12850 IPR002877 Ribosomal RNA methyltransferase FtsJ domain RD04_RS12855 IPR011546 Peptidase M41, FtsH extracellular RD04_RS12855 IPR037219 Peptidase M41-like RD04_RS12855 IPR003593 AAA+ ATPase domain RD04_RS12855 IPR041569 AAA ATPase, AAA+ lid domain RD04_RS12855 IPR003959 ATPase, AAA-type, core RD04_RS12855 IPR003960 ATPase, AAA-type, conserved site RD04_RS12855 IPR005936 Peptidase, FtsH RD04_RS12855 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12855 IPR000642 Peptidase M41 RD04_RS12860 IPR006390 Dihydropteroate synthase RD04_RS12860 IPR011005 Dihydropteroate synthase-like RD04_RS12860 IPR000489 Pterin-binding domain RD04_RS12865 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I RD04_RS12865 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III RD04_RS12865 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II RD04_RS12865 IPR016066 Alpha-D-phosphohexomutase, conserved site RD04_RS12865 IPR005843 Alpha-D-phosphohexomutase, C-terminal RD04_RS12865 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily RD04_RS12865 IPR005841 Alpha-D-phosphohexomutase superfamily RD04_RS12865 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III RD04_RS12865 IPR006352 Phosphoglucosamine mutase, bacterial type RD04_RS12875 IPR003695 Ppx/GppA phosphatase RD04_RS12875 IPR022371 Exopolyphosphatase RD04_RS12875 IPR030673 Pyrophosphatase, GppA/Ppx-type RD04_RS12880 IPR036832 Polyphosphate kinase N-terminal domain superfamily RD04_RS12880 IPR036830 Polyphosphate kinase middle domain superfamily RD04_RS12880 IPR003414 Polyphosphate kinase RD04_RS12880 IPR041108 Polyphosphate kinase, C-terminal domain 1 RD04_RS12880 IPR024953 Polyphosphate kinase middle domain RD04_RS12880 IPR025200 Polyphosphate kinase C-terminal domain 2 RD04_RS12880 IPR025198 Polyphosphate kinase N-terminal domain RD04_RS12885 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS RD04_RS12885 IPR024370 PBP domain RD04_RS12890 IPR011864 Phosphate ABC transporter, permease protein PstC RD04_RS12890 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS12890 IPR035906 MetI-like superfamily RD04_RS12895 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS12895 IPR035906 MetI-like superfamily RD04_RS12895 IPR005672 Phosphate transport system permease protein PstA RD04_RS12900 IPR017871 ABC transporter, conserved site RD04_RS12900 IPR003593 AAA+ ATPase domain RD04_RS12900 IPR015850 ABC transporter, phosphate import, PstB RD04_RS12900 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS12900 IPR005670 Phosphate transport system permease protein 1 RD04_RS12900 IPR003439 ABC transporter-like RD04_RS12920 IPR000468 Barstar (barnase inhibitor) RD04_RS12920 IPR035905 Barstar-like superfamily RD04_RS12930 IPR042113 Phosphate acetyltransferase, domain 1 RD04_RS12930 IPR036291 NAD(P)-binding domain superfamily RD04_RS12930 IPR042112 Phosphate acetyltransferase, domain 2 RD04_RS12930 IPR015884 Malic enzyme, conserved site RD04_RS12930 IPR012301 Malic enzyme, N-terminal domain RD04_RS12930 IPR037062 Malic enzyme, N-terminal domain superfamily RD04_RS12930 IPR012188 NAD(P)-dependent malic enzyme RD04_RS12930 IPR012302 Malic enzyme, NAD-binding RD04_RS12930 IPR002505 Phosphate acetyl/butaryl transferase RD04_RS12940 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS12940 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site RD04_RS12940 IPR004839 Aminotransferase, class I/classII RD04_RS12940 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS12945 IPR008258 Transglycosylase SLT domain 1 RD04_RS12945 IPR000189 Prokaryotic transglycosylase, active site RD04_RS12945 IPR024570 Murein transglycosylase-C, N-terminal RD04_RS12945 IPR023664 Murein transglycosylase-C RD04_RS12945 IPR023346 Lysozyme-like domain superfamily RD04_RS12950 IPR023677 UbiD decarboxylyase, bacteria RD04_RS12950 IPR002830 UbiD decarboxylyase family RD04_RS12975 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site RD04_RS12975 IPR014777 Tetrapyrrole methylase, subdomain 1 RD04_RS12975 IPR014776 Tetrapyrrole methylase, subdomain 2 RD04_RS12975 IPR006366 Uroporphyrin-III C-methyltransferase RD04_RS12975 IPR036291 NAD(P)-binding domain superfamily RD04_RS12975 IPR012409 Sirohaem synthase RD04_RS12975 IPR028281 Siroheme synthase, central domain RD04_RS12975 IPR019478 Sirohaem synthase, dimerisation domain RD04_RS12975 IPR006367 Sirohaem synthase, N-terminal RD04_RS12975 IPR000878 Tetrapyrrole methylase RD04_RS12975 IPR035996 Tetrapyrrole methylase superfamily RD04_RS12980 IPR011050 Pectin lyase fold/virulence factor RD04_RS12980 IPR003991 Pertactin virulence factor family RD04_RS12980 IPR004899 Pertactin, central region RD04_RS12980 IPR003992 Pertactin autotransporter RD04_RS12980 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS12980 IPR006315 Outer membrane autotransporter barrel RD04_RS12980 IPR036709 Autotransporter beta-domain superfamily RD04_RS12980 IPR005546 Autotransporter beta-domain RD04_RS12990 IPR000836 Phosphoribosyltransferase domain RD04_RS12990 IPR029057 Phosphoribosyltransferase-like RD04_RS12990 IPR034332 Uracil phosphoribosyltransferase, bacterial-type RD04_RS12990 IPR005765 Uracil phosphoribosyl transferase RD04_RS12995 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C RD04_RS12995 IPR012338 Beta-lactamase/transpeptidase-like RD04_RS13000 IPR042118 QueA, domain 1 RD04_RS13000 IPR042119 QueA, domain 2 RD04_RS13000 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily RD04_RS13000 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA RD04_RS13005 IPR002616 tRNA-guanine(15) transglycosylase-like RD04_RS13005 IPR036511 Queuine tRNA-ribosyltransferase-like RD04_RS13005 IPR004803 tRNA-guanine transglycosylase RD04_RS13010 IPR003849 Preprotein translocase YajC RD04_RS13015 IPR027398 SecD export protein N-terminal TM domain RD04_RS13015 IPR005791 Protein translocase subunit SecD RD04_RS13015 IPR001036 Acriflavin resistance protein RD04_RS13015 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RD04_RS13015 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RD04_RS13015 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RD04_RS13020 IPR005665 Protein-export membrane protein SecF, bacterial RD04_RS13020 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RD04_RS13020 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RD04_RS13020 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RD04_RS13035 IPR023404 Radical SAM, alpha/beta horseshoe RD04_RS13035 IPR002792 TRAM domain RD04_RS13035 IPR038135 Methylthiotransferase, N-terminal domain superfamily RD04_RS13035 IPR007197 Radical SAM RD04_RS13035 IPR013848 Methylthiotransferase, N-terminal RD04_RS13035 IPR020612 Methylthiotransferase, conserved site RD04_RS13035 IPR005839 Methylthiotransferase RD04_RS13035 IPR006638 Elp3/MiaB/NifB RD04_RS13035 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB RD04_RS13040 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS13040 IPR003714 PhoH-like protein RD04_RS13045 IPR020549 Endoribonuclease YbeY, conserved site RD04_RS13045 IPR023091 Metalloprotease catalytic domain superfamily, predicted RD04_RS13045 IPR002036 Endoribonuclease YbeY RD04_RS13050 IPR000644 CBS domain RD04_RS13050 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS13050 IPR005170 Transporter-associated domain RD04_RS13050 IPR016169 FAD-binding, type PCMH, subdomain 2 RD04_RS13055 IPR004563 Apolipoprotein N-acyltransferase RD04_RS13055 IPR003010 Carbon-nitrogen hydrolase RD04_RS13055 IPR036526 Carbon-nitrogen hydrolase superfamily RD04_RS13060 IPR020471 Aldo/keto reductase RD04_RS13060 IPR036812 NADP-dependent oxidoreductase domain superfamily RD04_RS13060 IPR023210 NADP-dependent oxidoreductase domain RD04_RS13085 IPR007439 Chemotaxis phosphatase, CheZ RD04_RS13090 IPR001789 Signal transduction response regulator, receiver domain RD04_RS13090 IPR011006 CheY-like superfamily RD04_RS13095 IPR035909 Methylesterase CheB, C-terminal RD04_RS13095 IPR001789 Signal transduction response regulator, receiver domain RD04_RS13095 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type RD04_RS13095 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase RD04_RS13095 IPR011006 CheY-like superfamily RD04_RS13100 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS13100 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily RD04_RS13100 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RD04_RS13100 IPR000780 MCP methyltransferase, CheR-type RD04_RS13100 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RD04_RS13100 IPR026024 Chemotaxis protein methyltransferase CheR RD04_RS13115 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS13115 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily RD04_RS13115 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RD04_RS13115 IPR000780 MCP methyltransferase, CheR-type RD04_RS13115 IPR026024 Chemotaxis protein methyltransferase CheR RD04_RS13115 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RD04_RS13120 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding RD04_RS13120 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily RD04_RS13120 IPR004090 Chemotaxis methyl-accepting receptor RD04_RS13120 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site RD04_RS13120 IPR003660 HAMP domain RD04_RS13120 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain RD04_RS13125 IPR039315 Chemotaxis protein CheW RD04_RS13125 IPR036061 CheW-like domain superfamily RD04_RS13125 IPR002545 CheW-like domain RD04_RS13130 IPR005467 Histidine kinase domain RD04_RS13130 IPR004105 Histidine kinase CheA-like, homodimeric domain RD04_RS13130 IPR036061 CheW-like domain superfamily RD04_RS13130 IPR002545 CheW-like domain RD04_RS13130 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS13130 IPR015162 CheY binding RD04_RS13130 IPR035891 CheY-binding domain of CheA RD04_RS13130 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS13130 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily RD04_RS13130 IPR036641 HPT domain superfamily RD04_RS13130 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS13130 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain RD04_RS13130 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS13135 IPR001789 Signal transduction response regulator, receiver domain RD04_RS13135 IPR011006 CheY-like superfamily RD04_RS13140 IPR036737 OmpA-like domain superfamily RD04_RS13140 IPR006665 OmpA-like domain RD04_RS13140 IPR025713 Motility protein B, N-terminal domain RD04_RS13145 IPR022522 Flagellar motor stator, MotA RD04_RS13145 IPR002898 MotA/TolQ/ExbB proton channel RD04_RS13145 IPR000540 Flagellar motor protein MotA, conserved site RD04_RS13150 IPR007944 Flagellar transcriptional activator FlhC RD04_RS13155 IPR023559 Flagellar transcriptional activator FlhD RD04_RS13155 IPR036194 Flagellar transcriptional activator FlhD superfamily RD04_RS13160 IPR013324 RNA polymerase sigma factor, region 3/4-like RD04_RS13160 IPR012845 RNA polymerase sigma factor, FliA/WhiG RD04_RS13160 IPR028617 RNA polymerase sigma factor FliA RD04_RS13160 IPR000943 RNA polymerase sigma-70 RD04_RS13160 IPR007624 RNA polymerase sigma-70 region 3 RD04_RS13160 IPR007630 RNA polymerase sigma-70 region 4 RD04_RS13160 IPR014284 RNA polymerase sigma-70 like domain RD04_RS13160 IPR013325 RNA polymerase sigma factor, region 2 RD04_RS13160 IPR007627 RNA polymerase sigma-70 region 2 RD04_RS13170 IPR006196 RNA-binding domain, S1, IF1 type RD04_RS13170 IPR004368 Translation initiation factor IF-1 RD04_RS13170 IPR022967 RNA-binding domain, S1 RD04_RS13170 IPR012340 Nucleic acid-binding, OB-fold RD04_RS13180 IPR013731 Opacity-associated protein A, N-terminal RD04_RS13180 IPR018392 LysM domain RD04_RS13180 IPR011055 Duplicated hybrid motif RD04_RS13180 IPR016047 Peptidase M23 RD04_RS13190 IPR008284 Molybdenum cofactor biosynthesis, conserved site RD04_RS13190 IPR001453 MoaB/Mog domain RD04_RS13190 IPR036425 MoaB/Mog-like domain superfamily RD04_RS13195 IPR001204 Phosphate transporter RD04_RS13200 IPR011606 Branched-chain amino acid transport, permease RD04_RS13200 IPR004471 Branched-chain amino acid transport, AzlC RD04_RS13210 IPR001623 DnaJ domain RD04_RS13210 IPR018253 DnaJ domain, conserved site RD04_RS13210 IPR008971 HSP40/DnaJ peptide-binding RD04_RS13210 IPR002939 Chaperone DnaJ, C-terminal RD04_RS13210 IPR023859 DNA-binding protein, curved-DNA RD04_RS13210 IPR036869 Chaperone J-domain superfamily RD04_RS13230 IPR036249 Thioredoxin-like superfamily RD04_RS13230 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal RD04_RS13230 IPR004045 Glutathione S-transferase, N-terminal RD04_RS13230 IPR040079 Glutathione Transferase family RD04_RS13230 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RD04_RS13230 IPR010987 Glutathione S-transferase, C-terminal-like RD04_RS13235 IPR024501 Protein of unknown function DUF3141 RD04_RS13235 IPR029058 Alpha/Beta hydrolase fold RD04_RS13240 IPR002505 Phosphate acetyl/butaryl transferase RD04_RS13240 IPR012147 Phosphate acetyl/butyryltransferase RD04_RS13245 IPR023865 Aliphatic acid kinase, short-chain, conserved site RD04_RS13245 IPR004372 Acetate/propionate kinase RD04_RS13245 IPR000890 Aliphatic acid kinase, short-chain RD04_RS13250 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) RD04_RS13250 IPR036291 NAD(P)-binding domain superfamily RD04_RS13250 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS13255 IPR036043 Phosphoglycerate kinase superfamily RD04_RS13255 IPR015824 Phosphoglycerate kinase, N-terminal RD04_RS13255 IPR001576 Phosphoglycerate kinase RD04_RS13255 IPR015911 Phosphoglycerate kinase, conserved site RD04_RS13260 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain RD04_RS13260 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I RD04_RS13260 IPR036291 NAD(P)-binding domain superfamily RD04_RS13260 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site RD04_RS13260 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family RD04_RS13260 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain RD04_RS13265 IPR029061 Thiamin diphosphate-binding fold RD04_RS13265 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II RD04_RS13265 IPR005478 Transketolase, bacterial-like RD04_RS13265 IPR005475 Transketolase-like, pyrimidine-binding domain RD04_RS13265 IPR033247 Transketolase family RD04_RS13265 IPR033248 Transketolase, C-terminal domain RD04_RS13265 IPR020826 Transketolase binding site RD04_RS13265 IPR005474 Transketolase, N-terminal RD04_RS13270 IPR029028 Alpha/beta knot methyltransferases RD04_RS13270 IPR006700 Ribosomal RNA small subunit methyltransferase E RD04_RS13270 IPR015947 PUA-like superfamily RD04_RS13270 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD04_RS13285 IPR042187 Flagellin, C-terminal domain, subdomain 2 RD04_RS13285 IPR001029 Flagellin, D0/D1 domain RD04_RS13285 IPR001492 Flagellin RD04_RS13290 IPR023753 FAD/NAD(P)-binding domain RD04_RS13290 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD04_RS13290 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I RD04_RS13290 IPR006258 Dihydrolipoamide dehydrogenase RD04_RS13290 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily RD04_RS13290 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site RD04_RS13290 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS13300 IPR004660 Pyruvate dehydrogenase E1 component RD04_RS13300 IPR005474 Transketolase, N-terminal RD04_RS13300 IPR041621 Pyruvate dehydrogenase E1 component, middle domain RD04_RS13300 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal RD04_RS13300 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II RD04_RS13300 IPR029061 Thiamin diphosphate-binding fold RD04_RS13305 IPR005467 Histidine kinase domain RD04_RS13305 IPR035965 PAS domain superfamily RD04_RS13305 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS13305 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS13305 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS13305 IPR001610 PAC motif RD04_RS13305 IPR000014 PAS domain RD04_RS13305 IPR000700 PAS-associated, C-terminal RD04_RS13305 IPR013767 PAS fold RD04_RS13305 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS13305 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS13310 IPR001789 Signal transduction response regulator, receiver domain RD04_RS13310 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS13310 IPR011006 CheY-like superfamily RD04_RS13310 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS13310 IPR000792 Transcription regulator LuxR, C-terminal RD04_RS13315 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase RD04_RS13315 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD04_RS13315 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site RD04_RS13315 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD04_RS13315 IPR036291 NAD(P)-binding domain superfamily RD04_RS13320 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RD04_RS13320 IPR001567 Peptidase M3A/M3B catalytic domain RD04_RS13325 IPR003782 Copper chaperone SCO1/SenC RD04_RS13325 IPR036249 Thioredoxin-like superfamily RD04_RS13335 IPR003423 Outer membrane efflux protein RD04_RS13335 IPR010131 RND efflux system, outer membrane lipoprotein, NodT RD04_RS13345 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD04_RS13345 IPR006143 RND efflux pump, membrane fusion protein RD04_RS13350 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS13350 IPR005119 LysR, substrate-binding RD04_RS13350 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS13350 IPR000847 Transcription regulator HTH, LysR RD04_RS13355 IPR002942 RNA-binding S4 domain RD04_RS13355 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site RD04_RS13355 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F RD04_RS13355 IPR006145 Pseudouridine synthase, RsuA/RluA RD04_RS13355 IPR036986 RNA-binding S4 domain superfamily RD04_RS13355 IPR020103 Pseudouridine synthase, catalytic domain superfamily RD04_RS13355 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain RD04_RS13360 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RD04_RS13360 IPR007440 Chorismate--pyruvate lyase RD04_RS13365 IPR020846 Major facilitator superfamily domain RD04_RS13365 IPR036259 MFS transporter superfamily RD04_RS13365 IPR011701 Major facilitator superfamily RD04_RS13375 IPR020471 Aldo/keto reductase RD04_RS13375 IPR023210 NADP-dependent oxidoreductase domain RD04_RS13375 IPR036812 NADP-dependent oxidoreductase domain superfamily RD04_RS13380 IPR000086 NUDIX hydrolase domain RD04_RS13380 IPR023735 Uncharacterised nudix hydrolase NudL RD04_RS13380 IPR000059 NUDIX hydrolase, NudL, conserved site RD04_RS13380 IPR015797 NUDIX hydrolase-like domain superfamily RD04_RS13385 IPR018257 Ribosomal protein L19, conserved site RD04_RS13385 IPR038657 Ribosomal protein L19 superfamily RD04_RS13385 IPR001857 Ribosomal protein L19 RD04_RS13385 IPR008991 Translation protein SH3-like domain superfamily RD04_RS13400 IPR006638 Elp3/MiaB/NifB RD04_RS13400 IPR013785 Aldolase-type TIM barrel RD04_RS13400 IPR007197 Radical SAM RD04_RS13400 IPR040086 Protein MJ0683-like RD04_RS13410 IPR011784 Sulphate adenylyltransferase, small subunit RD04_RS13410 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS13410 IPR002500 Phosphoadenosine phosphosulphate reductase RD04_RS13415 IPR002500 Phosphoadenosine phosphosulphate reductase RD04_RS13415 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS13415 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase RD04_RS13415 IPR011798 Adenosine 5'-phosphosulphate reductase RD04_RS13420 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS13420 IPR005666 Sulphate transport system permease protein 1 RD04_RS13420 IPR003593 AAA+ ATPase domain RD04_RS13420 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS13420 IPR003439 ABC transporter-like RD04_RS13420 IPR024765 TOBE-like domain RD04_RS13420 IPR041193 CysA, C-terminal regulatory domain RD04_RS13420 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal RD04_RS13420 IPR017871 ABC transporter, conserved site RD04_RS13425 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS13425 IPR011866 Sulphate ABC transporter, permease protein CysW RD04_RS13425 IPR005667 Sulphate ABC transporter permease protein 2 RD04_RS13425 IPR035906 MetI-like superfamily RD04_RS13430 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS13430 IPR035906 MetI-like superfamily RD04_RS13430 IPR005667 Sulphate ABC transporter permease protein 2 RD04_RS13430 IPR011865 Sulphate ABC transporter, permease protein CysT RD04_RS13440 IPR000957 Sulphate/thiosulphate-binding, conserved site RD04_RS13440 IPR005669 Thiosulphate/Sulfate-binding protein RD04_RS13440 IPR034408 Sulphate/thiosulphate-binding site RD04_RS13445 IPR013766 Thioredoxin domain RD04_RS13445 IPR036249 Thioredoxin-like superfamily RD04_RS13445 IPR022915 Peroxiredoxin, TDXH subfamily RD04_RS13445 IPR019479 Peroxiredoxin, C-terminal RD04_RS13445 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RD04_RS13445 IPR024706 Peroxiredoxin, AhpC-type RD04_RS13450 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS13450 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS13450 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS13450 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RD04_RS13450 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS13450 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS13450 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS13455 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal RD04_RS13455 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal RD04_RS13455 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal RD04_RS13455 IPR001308 Electron transfer flavoprotein alpha subunit/FixB RD04_RS13455 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site RD04_RS13455 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS13455 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS13460 IPR012255 Electron transfer flavoprotein, beta subunit RD04_RS13460 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal RD04_RS13460 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS13460 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal RD04_RS13460 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site RD04_RS13465 IPR023696 Ureohydrolase domain superfamily RD04_RS13465 IPR000286 Histone deacetylase family RD04_RS13465 IPR037138 Histone deacetylase domain superfamily RD04_RS13465 IPR023801 Histone deacetylase domain RD04_RS13470 IPR031304 Transglycosylase SLT domain 2 RD04_RS13470 IPR023346 Lysozyme-like domain superfamily RD04_RS13470 IPR011757 Lytic transglycosylase MltB RD04_RS13475 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD04_RS13475 IPR001926 Pyridoxal-phosphate dependent enzyme RD04_RS13475 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site RD04_RS13475 IPR005858 Cysteine synthase CysM RD04_RS13475 IPR005856 Cysteine synthase RD04_RS13485 IPR010994 RuvA domain 2-like RD04_RS13485 IPR004509 Competence protein ComEA, helix-hairpin-helix domain RD04_RS13485 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 RD04_RS13485 IPR019554 Soluble ligand binding domain RD04_RS13485 IPR004787 Competence protein ComEA RD04_RS13490 IPR001509 NAD-dependent epimerase/dehydratase RD04_RS13490 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase RD04_RS13490 IPR036291 NAD(P)-binding domain superfamily RD04_RS13495 IPR029056 Ribokinase-like RD04_RS13495 IPR011913 RfaE bifunctional protein, domain I RD04_RS13495 IPR011611 Carbohydrate kinase PfkB RD04_RS13495 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site RD04_RS13500 IPR011990 Tetratricopeptide-like helical domain superfamily RD04_RS13500 IPR019734 Tetratricopeptide repeat RD04_RS13500 IPR013026 Tetratricopeptide repeat-containing domain RD04_RS13500 IPR041166 LapB, rubredoxin metal binding domain RD04_RS13500 IPR030865 Lipopolysaccharide assembly protein B RD04_RS13510 IPR000119 Histone-like DNA-binding protein RD04_RS13510 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily RD04_RS13510 IPR005685 Integration host factor, beta subunit RD04_RS13515 IPR000110 Ribosomal protein S1 RD04_RS13515 IPR022967 RNA-binding domain, S1 RD04_RS13515 IPR003029 S1 domain RD04_RS13515 IPR012340 Nucleic acid-binding, OB-fold RD04_RS13520 IPR011994 Cytidylate kinase domain RD04_RS13520 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS13520 IPR003136 Cytidylate kinase RD04_RS13525 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RD04_RS13525 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase RD04_RS13525 IPR036968 Enolpyruvate transferase domain superfamily RD04_RS13525 IPR001986 Enolpyruvate transferase domain RD04_RS13525 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site RD04_RS13530 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS13530 IPR002912 ACT domain RD04_RS13530 IPR036291 NAD(P)-binding domain superfamily RD04_RS13530 IPR003099 Prephenate dehydrogenase RD04_RS13535 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase RD04_RS13535 IPR002912 ACT domain RD04_RS13535 IPR036979 Chorismate mutase domain superfamily RD04_RS13535 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain RD04_RS13535 IPR001086 Prephenate dehydratase RD04_RS13535 IPR018528 Prephenate dehydratase, conserved site RD04_RS13535 IPR036263 Chorismate mutase type II superfamily RD04_RS13535 IPR002701 Chorismate mutase II, prokaryotic-type RD04_RS13540 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS13540 IPR022278 Phosphoserine aminotransferase RD04_RS13540 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS13540 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS13540 IPR000192 Aminotransferase class V domain RD04_RS13545 IPR013760 DNA topoisomerase, type IIA-like domain superfamily RD04_RS13545 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal RD04_RS13545 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta RD04_RS13545 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily RD04_RS13545 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat RD04_RS13545 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RD04_RS13545 IPR005743 DNA gyrase, subunit A RD04_RS13550 IPR036737 OmpA-like domain superfamily RD04_RS13550 IPR006665 OmpA-like domain RD04_RS13550 IPR006690 Outer membrane protein, OmpA-like, conserved site RD04_RS13550 IPR006664 Outer membrane protein, bacterial RD04_RS13555 IPR010233 Ubiquinone biosynthesis O-methyltransferase RD04_RS13555 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS13560 IPR036412 HAD-like superfamily RD04_RS13560 IPR006439 HAD hydrolase, subfamily IA RD04_RS13560 IPR037512 Phosphoglycolate phosphatase, prokaryotic RD04_RS13560 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic RD04_RS13560 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RD04_RS13560 IPR041492 Haloacid dehalogenase-like hydrolase RD04_RS13560 IPR023214 HAD superfamily RD04_RS13565 IPR011701 Major facilitator superfamily RD04_RS13565 IPR020846 Major facilitator superfamily domain RD04_RS13565 IPR036259 MFS transporter superfamily RD04_RS13590 IPR005119 LysR, substrate-binding RD04_RS13590 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS13590 IPR000847 Transcription regulator HTH, LysR RD04_RS13590 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS13595 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS13595 IPR042100 Bordetella uptake gene, domain 1 RD04_RS13595 IPR005064 Bordetella uptake gene RD04_RS13610 IPR013483 Molybdenum cofactor biosynthesis protein A RD04_RS13610 IPR013785 Aldolase-type TIM barrel RD04_RS13610 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site RD04_RS13610 IPR010505 Molybdenum cofactor synthesis C-terminal RD04_RS13610 IPR007197 Radical SAM RD04_RS13610 IPR006638 Elp3/MiaB/NifB RD04_RS13615 IPR036135 MoeA, N-terminal and linker domain superfamily RD04_RS13615 IPR005110 MoeA, N-terminal and linker domain RD04_RS13615 IPR008284 Molybdenum cofactor biosynthesis, conserved site RD04_RS13615 IPR005111 MoeA, C-terminal, domain IV RD04_RS13615 IPR036688 MoeA, C-terminal, domain IV superfamily RD04_RS13615 IPR001453 MoaB/Mog domain RD04_RS13615 IPR038987 Molybdopterin biosynthesis protein MoeA-like RD04_RS13615 IPR036425 MoaB/Mog-like domain superfamily RD04_RS13620 IPR001453 MoaB/Mog domain RD04_RS13620 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria RD04_RS13620 IPR008284 Molybdenum cofactor biosynthesis, conserved site RD04_RS13620 IPR012245 Molybdenum cofactor biosynthesis protein MoaB RD04_RS13620 IPR036425 MoaB/Mog-like domain superfamily RD04_RS13625 IPR003448 Molybdopterin biosynthesis MoaE RD04_RS13625 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily RD04_RS13635 IPR023045 Molybdenum cofactor biosynthesis C RD04_RS13635 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain RD04_RS13635 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily RD04_RS13645 IPR029058 Alpha/Beta hydrolase fold RD04_RS13645 IPR002925 Dienelactone hydrolase RD04_RS13655 IPR036249 Thioredoxin-like superfamily RD04_RS13655 IPR013766 Thioredoxin domain RD04_RS13655 IPR037944 Peroxiredoxin-5-like RD04_RS13655 IPR013740 Redoxin RD04_RS13670 IPR006638 Elp3/MiaB/NifB RD04_RS13670 IPR010722 Biotin and thiamin synthesis-associated domain RD04_RS13670 IPR013785 Aldolase-type TIM barrel RD04_RS13670 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB RD04_RS13670 IPR007197 Radical SAM RD04_RS13670 IPR024177 Biotin synthase RD04_RS13690 IPR017969 Heavy-metal-associated, conserved site RD04_RS13690 IPR006121 Heavy metal-associated domain, HMA RD04_RS13690 IPR036163 Heavy metal-associated domain superfamily RD04_RS13690 IPR027256 P-type ATPase, subfamily IB RD04_RS13690 IPR001757 P-type ATPase RD04_RS13690 IPR023299 P-type ATPase, cytoplasmic domain N RD04_RS13690 IPR018303 P-type ATPase, phosphorylation site RD04_RS13690 IPR023298 P-type ATPase, transmembrane domain superfamily RD04_RS13690 IPR008250 P-type ATPase, A domain superfamily RD04_RS13690 IPR036412 HAD-like superfamily RD04_RS13690 IPR023214 HAD superfamily RD04_RS13695 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator RD04_RS13695 IPR009061 Putative DNA-binding domain superfamily RD04_RS13695 IPR000551 MerR-type HTH domain RD04_RS13710 IPR036291 NAD(P)-binding domain superfamily RD04_RS13710 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RD04_RS13710 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS13710 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS13715 IPR002994 Surfeit locus 1/Shy1 RD04_RS13720 IPR014210 Cytochrome o ubiquinol oxidase subunit IV RD04_RS13720 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes RD04_RS13725 IPR000298 Cytochrome c oxidase subunit III-like RD04_RS13725 IPR033946 Ubiquinol oxidase subunit III domain RD04_RS13725 IPR014206 Cytochrome o ubiquinol oxidase, subunit III RD04_RS13725 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle RD04_RS13725 IPR035973 Cytochrome c oxidase subunit III-like superfamily RD04_RS13725 IPR024791 Cytochrome c oxidase subunit III RD04_RS13730 IPR036927 Cytochrome c oxidase-like, subunit I superfamily RD04_RS13730 IPR014207 Cytochrome o ubiquinol oxidase, subunit I RD04_RS13730 IPR023616 Cytochrome c oxidase-like, subunit I domain RD04_RS13730 IPR000883 Cytochrome c oxidase subunit I RD04_RS13730 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site RD04_RS13740 IPR005828 Major facilitator, sugar transporter-like RD04_RS13740 IPR036259 MFS transporter superfamily RD04_RS13740 IPR004736 MFS transporter, metabolite:H symporter RD04_RS13740 IPR005829 Sugar transporter, conserved site RD04_RS13740 IPR020846 Major facilitator superfamily domain RD04_RS13740 IPR011701 Major facilitator superfamily RD04_RS13755 IPR007475 Ubiquinone biosynthesis accessory factor UbiK RD04_RS13760 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RD04_RS13760 IPR017918 Nitrogen regulatory protein PII, conserved site RD04_RS13760 IPR002332 Nitrogen regulatory protein P-II, urydylation site RD04_RS13760 IPR002187 Nitrogen regulatory protein PII RD04_RS13760 IPR011322 Nitrogen regulatory PII-like, alpha/beta RD04_RS13770 IPR004899 Pertactin, central region RD04_RS13770 IPR005546 Autotransporter beta-domain RD04_RS13770 IPR003992 Pertactin autotransporter RD04_RS13770 IPR003991 Pertactin virulence factor family RD04_RS13770 IPR011050 Pectin lyase fold/virulence factor RD04_RS13770 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS13770 IPR006315 Outer membrane autotransporter barrel RD04_RS13770 IPR036709 Autotransporter beta-domain superfamily RD04_RS13780 IPR001647 DNA-binding HTH domain, TetR-type RD04_RS13780 IPR009057 Homeobox-like domain superfamily RD04_RS13780 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RD04_RS13785 IPR011701 Major facilitator superfamily RD04_RS13785 IPR020846 Major facilitator superfamily domain RD04_RS13785 IPR036259 MFS transporter superfamily RD04_RS13790 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS13790 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS13790 IPR017871 ABC transporter, conserved site RD04_RS13790 IPR003593 AAA+ ATPase domain RD04_RS13790 IPR003439 ABC transporter-like RD04_RS13795 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS13795 IPR003593 AAA+ ATPase domain RD04_RS13795 IPR003439 ABC transporter-like RD04_RS13795 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS13795 IPR017871 ABC transporter, conserved site RD04_RS13800 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal RD04_RS13800 IPR001851 ABC transporter, permease RD04_RS13805 IPR001851 ABC transporter, permease RD04_RS13810 IPR000709 Leu/Ile/Val-binding protein RD04_RS13810 IPR028081 Leucine-binding protein domain RD04_RS13810 IPR028082 Periplasmic binding protein-like I RD04_RS13820 IPR010985 Ribbon-helix-helix RD04_RS13820 IPR024089 Proline dehydrogenase PutA, domain I/II RD04_RS13820 IPR024090 Proline dehydrogenase PutA, domain I RD04_RS13820 IPR002872 Proline dehydrogenase domain RD04_RS13820 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain RD04_RS13820 IPR029041 FAD-linked oxidoreductase-like RD04_RS13820 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 RD04_RS13820 IPR025703 Bifunctional protein PutA RD04_RS13820 IPR013321 Arc-type ribbon-helix-helix RD04_RS13820 IPR015590 Aldehyde dehydrogenase domain RD04_RS13820 IPR024082 Proline dehydrogenase PutA, domain II RD04_RS13820 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS13820 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS13820 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS13820 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS13820 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS13830 IPR003399 Mce/MlaD RD04_RS13835 IPR007498 Intermembrane transport protein PqiA-like RD04_RS13835 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type RD04_RS13840 IPR001270 ClpA/B family RD04_RS13840 IPR036628 Clp, N-terminal domain superfamily RD04_RS13840 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS13840 IPR004176 Clp, N-terminal RD04_RS13840 IPR041546 ClpA/ClpB, AAA lid domain RD04_RS13840 IPR028299 ClpA/B, conserved site 2 RD04_RS13840 IPR019489 Clp ATPase, C-terminal RD04_RS13840 IPR018368 ClpA/B, conserved site 1 RD04_RS13840 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA RD04_RS13840 IPR003959 ATPase, AAA-type, core RD04_RS13840 IPR003593 AAA+ ATPase domain RD04_RS13845 IPR001264 Glycosyl transferase, family 51 RD04_RS13845 IPR009647 Penicillin-binding, C-terminal RD04_RS13845 IPR036950 Penicillin binding protein transglycosylase domain RD04_RS13845 IPR001460 Penicillin-binding protein, transpeptidase RD04_RS13845 IPR012338 Beta-lactamase/transpeptidase-like RD04_RS13845 IPR011815 Penicillin-binding protein 1C RD04_RS13845 IPR023346 Lysozyme-like domain superfamily RD04_RS13850 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain RD04_RS13850 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain RD04_RS13850 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain RD04_RS13850 IPR026284 Alpha-2-macroglobulin, bacteria RD04_RS13850 IPR021868 Alpha-2-macroglobulin MG3 domain RD04_RS13850 IPR040639 Alpha-2-macroglobulin, MG1 domain RD04_RS13850 IPR001599 Alpha-2-macroglobulin RD04_RS13850 IPR002890 Macroglobulin domain RD04_RS13850 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RD04_RS13850 IPR011625 Alpha-2-macroglobulin, bait region domain RD04_RS13855 IPR022935 ATP-dependent Clp protease adaptor protein ClpS RD04_RS13855 IPR003769 Adaptor protein ClpS, core RD04_RS13855 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RD04_RS13860 IPR012156 Cold shock, CspA RD04_RS13860 IPR011129 Cold shock domain RD04_RS13860 IPR019844 Cold-shock (CSD) domain RD04_RS13860 IPR002059 Cold-shock protein, DNA-binding RD04_RS13860 IPR012340 Nucleic acid-binding, OB-fold RD04_RS13870 IPR020610 Thiolase, active site RD04_RS13870 IPR020613 Thiolase, conserved site RD04_RS13870 IPR020615 Thiolase, acyl-enzyme intermediate active site RD04_RS13870 IPR016039 Thiolase-like RD04_RS13870 IPR002155 Thiolase RD04_RS13870 IPR020616 Thiolase, N-terminal RD04_RS13870 IPR020617 Thiolase, C-terminal RD04_RS13870 IPR012793 Beta-ketoadipyl CoA thiolase RD04_RS13875 IPR014743 Chloride channel, core RD04_RS13875 IPR001807 Chloride channel, voltage gated RD04_RS13880 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily RD04_RS13880 IPR019832 Manganese/iron superoxide dismutase, C-terminal RD04_RS13880 IPR019831 Manganese/iron superoxide dismutase, N-terminal RD04_RS13880 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily RD04_RS13880 IPR001189 Manganese/iron superoxide dismutase RD04_RS13880 IPR019833 Manganese/iron superoxide dismutase, binding site RD04_RS13885 IPR020579 Exonuclease VII, large subunit, C-terminal RD04_RS13885 IPR003753 Exonuclease VII, large subunit RD04_RS13885 IPR025824 OB-fold nucleic acid binding domain RD04_RS13895 IPR002898 MotA/TolQ/ExbB proton channel RD04_RS13900 IPR003400 Biopolymer transport protein ExbD/TolR RD04_RS13905 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS13905 IPR003758 Tetraacyldisaccharide 4'-kinase RD04_RS13910 IPR005651 Trm112-like RD04_RS13915 IPR003329 Acylneuraminate cytidylyltransferase RD04_RS13915 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase RD04_RS13915 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS13920 IPR033690 Adenylate kinase, conserved site RD04_RS13920 IPR007862 Adenylate kinase, active site lid domain RD04_RS13920 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS13920 IPR006259 Adenylate kinase subfamily RD04_RS13920 IPR000850 Adenylate kinase/UMP-CMP kinase RD04_RS13925 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS13925 IPR036291 NAD(P)-binding domain superfamily RD04_RS13925 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS13930 IPR004268 Peptidoglycan biosynthesis protein MurJ RD04_RS13940 IPR002583 Ribosomal protein S20 RD04_RS13940 IPR036510 Ribosomal protein S20 superfamily RD04_RS13945 IPR005000 HpcH/HpaI aldolase/citrate lyase domain RD04_RS13945 IPR040442 Pyruvate kinase-like domain superfamily RD04_RS13945 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS13945 IPR017648 5-keto-4-deoxy-D-glucarate aldolase RD04_RS13960 IPR003767 Malate/L-lactate dehydrogenase-like RD04_RS13960 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily RD04_RS13975 IPR037158 Threonine synthase, N-terminal domain superfamily RD04_RS13975 IPR029144 Threonine synthase, N-terminal RD04_RS13975 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD04_RS13975 IPR001926 Pyridoxal-phosphate dependent enzyme RD04_RS13975 IPR004450 Threonine synthase-like RD04_RS13975 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site RD04_RS13980 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding RD04_RS13980 IPR002912 ACT domain RD04_RS13980 IPR016204 Homoserine dehydrogenase RD04_RS13980 IPR001342 Homoserine dehydrogenase, catalytic RD04_RS13980 IPR019811 Homoserine dehydrogenase, conserved site RD04_RS13980 IPR036291 NAD(P)-binding domain superfamily RD04_RS13985 IPR004839 Aminotransferase, class I/classII RD04_RS13985 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS13985 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS13985 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS13990 IPR036748 MTH938-like superfamily RD04_RS13990 IPR007523 NDUFAF3/Mth938 domain-containing protein RD04_RS13995 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RD04_RS13995 IPR013766 Thioredoxin domain RD04_RS13995 IPR024706 Peroxiredoxin, AhpC-type RD04_RS13995 IPR036249 Thioredoxin-like superfamily RD04_RS14005 IPR005255 PdxA family RD04_RS14010 IPR016833 Putative sodium bile acid cotransporter RD04_RS14010 IPR038770 Sodium/solute symporter superfamily RD04_RS14015 IPR007694 DNA helicase, DnaB-like, C-terminal RD04_RS14015 IPR007693 DNA helicase, DnaB-like, N-terminal RD04_RS14015 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS14015 IPR003593 AAA+ ATPase domain RD04_RS14015 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RD04_RS14015 IPR007692 DNA helicase, DnaB type RD04_RS14015 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily RD04_RS14025 IPR000244 Ribosomal protein L9 RD04_RS14025 IPR020069 Ribosomal protein L9, C-terminal RD04_RS14025 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RD04_RS14025 IPR020594 Ribosomal protein L9, bacteria/chloroplast RD04_RS14025 IPR036935 Ribosomal protein L9, N-terminal domain superfamily RD04_RS14025 IPR036791 Ribosomal protein L9, C-terminal domain superfamily RD04_RS14025 IPR020070 Ribosomal protein L9, N-terminal RD04_RS14030 IPR018275 Ribosomal protein S18, conserved site RD04_RS14030 IPR001648 Ribosomal protein S18 RD04_RS14030 IPR036870 Ribosomal protein S18 superfamily RD04_RS14035 IPR023646 Primosomal replication protein PriB RD04_RS14035 IPR000424 Primosome PriB/single-strand DNA-binding RD04_RS14035 IPR012340 Nucleic acid-binding, OB-fold RD04_RS14040 IPR020814 Ribosomal protein S6, plastid/chloroplast RD04_RS14040 IPR035980 Ribosomal protein S6 superfamily RD04_RS14040 IPR000529 Ribosomal protein S6 RD04_RS14040 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RD04_RS14045 IPR003801 GTP cyclohydrolase FolE2/MptA RD04_RS14045 IPR022838 GTP cyclohydrolase FolE2 RD04_RS14050 IPR005474 Transketolase, N-terminal RD04_RS14050 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II RD04_RS14050 IPR033248 Transketolase, C-terminal domain RD04_RS14050 IPR029061 Thiamin diphosphate-binding fold RD04_RS14050 IPR005477 Deoxyxylulose-5-phosphate synthase RD04_RS14050 IPR005475 Transketolase-like, pyrimidine-binding domain RD04_RS14050 IPR020826 Transketolase binding site RD04_RS14055 IPR033749 Polyprenyl synthetase, conserved site RD04_RS14055 IPR000092 Polyprenyl synthetase RD04_RS14055 IPR008949 Isoprenoid synthase domain superfamily RD04_RS14060 IPR037004 Exonuclease VII, small subunit superfamily RD04_RS14060 IPR003761 Exonuclease VII, small subunit RD04_RS14070 IPR005064 Bordetella uptake gene RD04_RS14070 IPR042100 Bordetella uptake gene, domain 1 RD04_RS14090 IPR038048 Magnesium transporter MgtE, transmembrane domain RD04_RS14090 IPR038076 MgtE, N-terminal domain superfamily RD04_RS14090 IPR000644 CBS domain RD04_RS14090 IPR006668 Magnesium transporter, MgtE intracellular domain RD04_RS14090 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily RD04_RS14090 IPR006667 SLC41 divalent cation transporters, integral membrane domain RD04_RS14090 IPR006669 Magnesium transporter MgtE RD04_RS14095 IPR029069 HotDog domain superfamily RD04_RS14095 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain RD04_RS14095 IPR006683 Thioesterase domain RD04_RS14095 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase RD04_RS14100 IPR004630 Uncharacterised protein family UPF0324, bacteria RD04_RS14100 IPR018383 Uncharacterised protein family UPF0324, prokaryote RD04_RS14105 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14105 IPR005119 LysR, substrate-binding RD04_RS14105 IPR000847 Transcription regulator HTH, LysR RD04_RS14105 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14110 IPR017439 Amidohydrolase RD04_RS14110 IPR036264 Bacterial exopeptidase dimerisation domain RD04_RS14110 IPR011650 Peptidase M20, dimerisation domain RD04_RS14110 IPR002933 Peptidase M20 RD04_RS14115 IPR020845 AMP-binding, conserved site RD04_RS14115 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS14115 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS14115 IPR000873 AMP-dependent synthetase/ligase RD04_RS14125 IPR020550 Inositol monophosphatase, conserved site RD04_RS14125 IPR000760 Inositol monophosphatase-like RD04_RS14125 IPR022337 Inositol monophosphatase, SuhB RD04_RS14125 IPR020583 Inositol monophosphatase, metal-binding site RD04_RS14125 IPR033942 Inositol monophosphatase RD04_RS14135 IPR025887 Glycoside hydrolase family 31, N-terminal domain RD04_RS14135 IPR011013 Galactose mutarotase-like domain superfamily RD04_RS14135 IPR000322 Glycoside hydrolase family 31 RD04_RS14135 IPR013780 Glycosyl hydrolase, all-beta RD04_RS14135 IPR017853 Glycoside hydrolase superfamily RD04_RS14140 IPR003439 ABC transporter-like RD04_RS14140 IPR017871 ABC transporter, conserved site RD04_RS14140 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS14140 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain RD04_RS14140 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal RD04_RS14140 IPR018449 NIL domain RD04_RS14140 IPR026253 Methionine import ATP-binding protein MetN RD04_RS14140 IPR003593 AAA+ ATPase domain RD04_RS14145 IPR035906 MetI-like superfamily RD04_RS14145 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS14150 IPR004872 Lipoprotein NlpA family RD04_RS14165 IPR039697 Iron-type alcohol dehydrogenase-like RD04_RS14165 IPR018211 Alcohol dehydrogenase, iron-type, conserved site RD04_RS14165 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA RD04_RS14190 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS14190 IPR011711 GntR, C-terminal RD04_RS14190 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14190 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14190 IPR000524 Transcription regulator HTH, GntR RD04_RS14195 IPR042100 Bordetella uptake gene, domain 1 RD04_RS14195 IPR005064 Bordetella uptake gene RD04_RS14215 IPR030156 Maltose/maltodextrin transport system permease protein MalF-like RD04_RS14215 IPR035277 MalF, N-terminal RD04_RS14215 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS14215 IPR035906 MetI-like superfamily RD04_RS14215 IPR029345 Maltose transport system permease protein MalF, P2 domain RD04_RS14220 IPR035906 MetI-like superfamily RD04_RS14220 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS14225 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS14225 IPR003439 ABC transporter-like RD04_RS14225 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS14225 IPR003593 AAA+ ATPase domain RD04_RS14225 IPR013611 Transport-associated OB, type 2 RD04_RS14225 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC RD04_RS14225 IPR017871 ABC transporter, conserved site RD04_RS14230 IPR023753 FAD/NAD(P)-binding domain RD04_RS14230 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD04_RS14230 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS14230 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I RD04_RS14230 IPR022962 Soluble pyridine nucleotide transhydrogenase RD04_RS14230 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily RD04_RS14240 IPR006059 Bacterial extracellular solute-binding protein RD04_RS14255 IPR009061 Putative DNA-binding domain superfamily RD04_RS14255 IPR010211 Redox-sensitive transcriptional activator SoxR RD04_RS14255 IPR015358 Transcription regulator MerR, DNA binding RD04_RS14255 IPR000551 MerR-type HTH domain RD04_RS14260 IPR005019 Methyladenine glycosylase RD04_RS14260 IPR011257 DNA glycosylase RD04_RS14260 IPR004597 DNA-3-methyladenine glycosylase I RD04_RS14265 IPR007844 AsmA RD04_RS14275 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RD04_RS14275 IPR001647 DNA-binding HTH domain, TetR-type RD04_RS14275 IPR009057 Homeobox-like domain superfamily RD04_RS14275 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RD04_RS14280 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS14280 IPR036291 NAD(P)-binding domain superfamily RD04_RS14280 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS14320 IPR037403 HTH-type transcriptional regulator CynR, PBP2 domain RD04_RS14320 IPR005119 LysR, substrate-binding RD04_RS14320 IPR000847 Transcription regulator HTH, LysR RD04_RS14320 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14320 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14325 IPR040442 Pyruvate kinase-like domain superfamily RD04_RS14325 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS14325 IPR003700 Ketopantoate hydroxymethyltransferase RD04_RS14330 IPR002299 Porin, Neisseria sp. type RD04_RS14330 IPR001702 Porin, Gram-negative type RD04_RS14330 IPR023614 Porin domain superfamily RD04_RS14330 IPR033900 Porin domain, Gram-negative type RD04_RS14340 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS14340 IPR036291 NAD(P)-binding domain superfamily RD04_RS14340 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS14345 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS14345 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS14345 IPR036291 NAD(P)-binding domain superfamily RD04_RS14350 IPR005829 Sugar transporter, conserved site RD04_RS14350 IPR005828 Major facilitator, sugar transporter-like RD04_RS14350 IPR036259 MFS transporter superfamily RD04_RS14350 IPR004736 MFS transporter, metabolite:H symporter RD04_RS14350 IPR020846 Major facilitator superfamily domain RD04_RS14360 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14360 IPR000847 Transcription regulator HTH, LysR RD04_RS14360 IPR005119 LysR, substrate-binding RD04_RS14360 IPR037412 HTH-type transcriptional regulator IlvR, PBP2 domain RD04_RS14360 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14365 IPR000796 Aspartate/other aminotransferase RD04_RS14365 IPR004839 Aminotransferase, class I/classII RD04_RS14365 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site RD04_RS14365 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS14365 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS14365 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS14370 IPR006674 HD domain RD04_RS14370 IPR003607 HD/PDEase domain RD04_RS14375 IPR036412 HAD-like superfamily RD04_RS14375 IPR001757 P-type ATPase RD04_RS14375 IPR027256 P-type ATPase, subfamily IB RD04_RS14375 IPR036163 Heavy metal-associated domain superfamily RD04_RS14375 IPR006121 Heavy metal-associated domain, HMA RD04_RS14375 IPR006122 Heavy metal-associated domain, copper ion-binding RD04_RS14375 IPR017969 Heavy-metal-associated, conserved site RD04_RS14375 IPR023214 HAD superfamily RD04_RS14375 IPR008250 P-type ATPase, A domain superfamily RD04_RS14375 IPR023298 P-type ATPase, transmembrane domain superfamily RD04_RS14375 IPR018303 P-type ATPase, phosphorylation site RD04_RS14375 IPR023299 P-type ATPase, cytoplasmic domain N RD04_RS14395 IPR013149 Alcohol dehydrogenase, C-terminal RD04_RS14395 IPR013154 Alcohol dehydrogenase, N-terminal RD04_RS14395 IPR004627 L-threonine 3-dehydrogenase RD04_RS14395 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site RD04_RS14395 IPR011032 GroES-like superfamily RD04_RS14395 IPR036291 NAD(P)-binding domain superfamily RD04_RS14395 IPR020843 Polyketide synthase, enoylreductase domain RD04_RS14410 IPR003593 AAA+ ATPase domain RD04_RS14410 IPR003439 ABC transporter-like RD04_RS14410 IPR017871 ABC transporter, conserved site RD04_RS14410 IPR015859 ABC transporter, taurine import, TauD RD04_RS14410 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS14415 IPR035906 MetI-like superfamily RD04_RS14415 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS14425 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS14425 IPR000873 AMP-dependent synthetase/ligase RD04_RS14425 IPR020845 AMP-binding, conserved site RD04_RS14425 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS14435 IPR019888 Transcription regulator AsnC-type RD04_RS14435 IPR011991 ArsR-like helix-turn-helix domain RD04_RS14435 IPR000485 AsnC-type HTH domain RD04_RS14435 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14435 IPR011008 Dimeric alpha-beta barrel RD04_RS14435 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD04_RS14435 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD04_RS14435 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14440 IPR042100 Bordetella uptake gene, domain 1 RD04_RS14440 IPR005064 Bordetella uptake gene RD04_RS14445 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily RD04_RS14445 IPR001783 Lumazine-binding protein RD04_RS14445 IPR026017 Lumazine-binding domain RD04_RS14445 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS14450 IPR023631 Amidase signature domain RD04_RS14450 IPR036928 Amidase signature (AS) superfamily RD04_RS14450 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit RD04_RS14450 IPR020556 Amidase, conserved site RD04_RS14450 IPR000120 Amidase RD04_RS14465 IPR000847 Transcription regulator HTH, LysR RD04_RS14465 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14465 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14465 IPR005119 LysR, substrate-binding RD04_RS14465 IPR037418 HTH-type transcriptional regulator TrpI, PBP2 RD04_RS14470 IPR036259 MFS transporter superfamily RD04_RS14470 IPR020846 Major facilitator superfamily domain RD04_RS14470 IPR011701 Major facilitator superfamily RD04_RS14470 IPR004747 Cyanate transport system protein RD04_RS14475 IPR016192 APOBEC/CMP deaminase, zinc-binding RD04_RS14475 IPR016193 Cytidine deaminase-like RD04_RS14475 IPR002125 Cytidine and deoxycytidylate deaminase domain RD04_RS14485 IPR005119 LysR, substrate-binding RD04_RS14485 IPR000847 Transcription regulator HTH, LysR RD04_RS14485 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14485 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14500 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal RD04_RS14500 IPR023663 NADPH dehydrogenase RD04_RS14500 IPR013785 Aldolase-type TIM barrel RD04_RS14505 IPR003439 ABC transporter-like RD04_RS14505 IPR017871 ABC transporter, conserved site RD04_RS14505 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS14505 IPR003593 AAA+ ATPase domain RD04_RS14505 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS14520 IPR001851 ABC transporter, permease RD04_RS14525 IPR019898 Putative aminoacrylate peracid reductase RutC RD04_RS14525 IPR006175 YjgF/YER057c/UK114 family RD04_RS14525 IPR035959 RutC-like superfamily RD04_RS14530 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS14530 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS14530 IPR000873 AMP-dependent synthetase/ligase RD04_RS14530 IPR020845 AMP-binding, conserved site RD04_RS14540 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14540 IPR005471 Transcription regulator IclR, N-terminal RD04_RS14540 IPR014757 Transcription regulator IclR, C-terminal RD04_RS14540 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14540 IPR029016 GAF-like domain superfamily RD04_RS14545 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS14545 IPR036291 NAD(P)-binding domain superfamily RD04_RS14545 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS14555 IPR003439 ABC transporter-like RD04_RS14555 IPR003593 AAA+ ATPase domain RD04_RS14555 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS14560 IPR005889 Nitrate transport permease RD04_RS14560 IPR035906 MetI-like superfamily RD04_RS14560 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS14575 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS14575 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS14575 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS14575 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS14580 IPR003673 CoA-transferase family III RD04_RS14580 IPR023606 CoA-transferase family III domain superfamily RD04_RS14585 IPR036928 Amidase signature (AS) superfamily RD04_RS14585 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit RD04_RS14585 IPR000120 Amidase RD04_RS14585 IPR020556 Amidase, conserved site RD04_RS14585 IPR023631 Amidase signature domain RD04_RS14595 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS14595 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14595 IPR011711 GntR, C-terminal RD04_RS14595 IPR000524 Transcription regulator HTH, GntR RD04_RS14595 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14605 IPR002549 Transmembrane protein TqsA-like RD04_RS14625 IPR015984 Cytochrome c prime, subgroup RD04_RS14625 IPR012127 Cytochrome c prime RD04_RS14625 IPR002321 Cytochrome c, class II RD04_RS14625 IPR010980 Cytochrome c/b562 RD04_RS14630 IPR022761 Fumarate lyase, N-terminal RD04_RS14630 IPR013539 Adenylosuccinate lyase PurB, C-terminal RD04_RS14630 IPR004769 Adenylosuccinate lyase RD04_RS14630 IPR020557 Fumarate lyase, conserved site RD04_RS14630 IPR024083 Fumarase/histidase, N-terminal RD04_RS14630 IPR000362 Fumarate lyase family RD04_RS14630 IPR008948 L-Aspartase-like RD04_RS14635 IPR010987 Glutathione S-transferase, C-terminal-like RD04_RS14635 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RD04_RS14635 IPR004045 Glutathione S-transferase, N-terminal RD04_RS14635 IPR034343 Uncharacterized GST-like protein YibF RD04_RS14635 IPR036249 Thioredoxin-like superfamily RD04_RS14635 IPR004046 Glutathione S-transferase, C-terminal RD04_RS14640 IPR002781 Transmembrane protein TauE-like RD04_RS14645 IPR004506 tRNA-specific 2-thiouridylase RD04_RS14645 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS14645 IPR023382 Adenine nucleotide alpha hydrolase-like domains RD04_RS14650 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14650 IPR000847 Transcription regulator HTH, LysR RD04_RS14650 IPR005119 LysR, substrate-binding RD04_RS14650 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14655 IPR042100 Bordetella uptake gene, domain 1 RD04_RS14655 IPR005064 Bordetella uptake gene RD04_RS14665 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 RD04_RS14665 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 RD04_RS14665 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RD04_RS14665 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RD04_RS14665 IPR036291 NAD(P)-binding domain superfamily RD04_RS14670 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS14670 IPR012136 NADP transhydrogenase, beta subunit RD04_RS14670 IPR034300 NADP transhydrogenase beta-like domain RD04_RS14680 IPR039426 Vitamin B12 transporter BtuB-like RD04_RS14680 IPR012910 TonB-dependent receptor, plug domain RD04_RS14680 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS14680 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS14680 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS14680 IPR010917 TonB-dependent receptor, conserved site RD04_RS14680 IPR010105 TonB-dependent siderophore receptor RD04_RS14685 IPR000801 Putative esterase RD04_RS14685 IPR029058 Alpha/Beta hydrolase fold RD04_RS14690 IPR009051 Alpha-helical ferredoxin RD04_RS14690 IPR012257 Glycolate oxidase, iron-sulphur subunit RD04_RS14690 IPR004017 Cysteine-rich domain RD04_RS14690 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD04_RS14690 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD04_RS14695 IPR006094 FAD linked oxidase, N-terminal RD04_RS14695 IPR016164 FAD-linked oxidase-like, C-terminal RD04_RS14695 IPR016169 FAD-binding, type PCMH, subdomain 2 RD04_RS14695 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS14695 IPR016166 FAD-binding domain, PCMH-type RD04_RS14700 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RD04_RS14700 IPR006094 FAD linked oxidase, N-terminal RD04_RS14700 IPR016166 FAD-binding domain, PCMH-type RD04_RS14700 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS14700 IPR016164 FAD-linked oxidase-like, C-terminal RD04_RS14700 IPR004113 FAD-linked oxidase, C-terminal RD04_RS14700 IPR004490 Glycolate oxidase subunit GlcD RD04_RS14705 IPR016164 FAD-linked oxidase-like, C-terminal RD04_RS14705 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS14705 IPR016166 FAD-binding domain, PCMH-type RD04_RS14705 IPR006094 FAD linked oxidase, N-terminal RD04_RS14705 IPR004490 Glycolate oxidase subunit GlcD RD04_RS14705 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RD04_RS14705 IPR004113 FAD-linked oxidase, C-terminal RD04_RS14710 IPR024973 ESPR domain RD04_RS14710 IPR011050 Pectin lyase fold/virulence factor RD04_RS14710 IPR024973 ESPR domain RD04_RS14710 IPR008619 Filamentous haemagglutinin repeat RD04_RS14710 IPR012334 Pectin lyase fold RD04_RS14710 IPR025157 Hemagglutinin repeat RD04_RS14710 IPR012334 Pectin lyase fold RD04_RS14710 IPR025157 Hemagglutinin repeat RD04_RS14710 IPR008638 Filamentous haemagglutinin, N-terminal RD04_RS14710 IPR008619 Filamentous haemagglutinin repeat RD04_RS14710 IPR008638 Filamentous haemagglutinin, N-terminal RD04_RS14710 IPR011050 Pectin lyase fold/virulence factor RD04_RS14715 IPR013785 Aldolase-type TIM barrel RD04_RS14715 IPR006218 DAHP synthetase I/KDSA RD04_RS14715 IPR006219 DHAP synthase, class 1 RD04_RS14720 IPR036059 Metalloprotease TldD/PmbA superfamily RD04_RS14720 IPR035068 Metalloprotease TldD/PmbA, N-terminal RD04_RS14720 IPR025502 TldD RD04_RS14720 IPR002510 Metalloprotease TldD/PmbA RD04_RS14725 IPR001110 Uncharacterised protein family UPF0012, conserved site RD04_RS14725 IPR036526 Carbon-nitrogen hydrolase superfamily RD04_RS14725 IPR003010 Carbon-nitrogen hydrolase RD04_RS14745 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 RD04_RS14745 IPR039425 RNA polymerase sigma-70 like RD04_RS14745 IPR007627 RNA polymerase sigma-70 region 2 RD04_RS14745 IPR013325 RNA polymerase sigma factor, region 2 RD04_RS14745 IPR013324 RNA polymerase sigma factor, region 3/4-like RD04_RS14745 IPR014284 RNA polymerase sigma-70 like domain RD04_RS14745 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site RD04_RS14745 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14755 IPR036183 YajQ-like superfamily RD04_RS14755 IPR035570 UPF0234, N-terminal RD04_RS14755 IPR035571 UPF0234-like, C-terminal RD04_RS14755 IPR007551 Protein of unknown function DUF520 RD04_RS14770 IPR011055 Duplicated hybrid motif RD04_RS14770 IPR036779 LysM domain superfamily RD04_RS14770 IPR018392 LysM domain RD04_RS14770 IPR016047 Peptidase M23 RD04_RS14785 IPR012910 TonB-dependent receptor, plug domain RD04_RS14785 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS14785 IPR039423 TonB-dependent receptor-like RD04_RS14785 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS14785 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS14785 IPR010105 TonB-dependent siderophore receptor RD04_RS14800 IPR007801 Uncharacterised protein family UPF0276 RD04_RS14800 IPR036237 Xylose isomerase-like superfamily RD04_RS14820 IPR011991 ArsR-like helix-turn-helix domain RD04_RS14820 IPR001845 HTH ArsR-type DNA-binding domain RD04_RS14820 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14820 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14825 IPR014210 Cytochrome o ubiquinol oxidase subunit IV RD04_RS14825 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes RD04_RS14830 IPR033946 Ubiquinol oxidase subunit III domain RD04_RS14830 IPR014206 Cytochrome o ubiquinol oxidase, subunit III RD04_RS14830 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle RD04_RS14830 IPR024791 Cytochrome c oxidase subunit III RD04_RS14830 IPR000298 Cytochrome c oxidase subunit III-like RD04_RS14830 IPR035973 Cytochrome c oxidase subunit III-like superfamily RD04_RS14835 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site RD04_RS14835 IPR014207 Cytochrome o ubiquinol oxidase, subunit I RD04_RS14835 IPR000883 Cytochrome c oxidase subunit I RD04_RS14835 IPR036927 Cytochrome c oxidase-like, subunit I superfamily RD04_RS14835 IPR023616 Cytochrome c oxidase-like, subunit I domain RD04_RS14840 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain RD04_RS14840 IPR006333 Cytochrome o ubiquinol oxidase subunit II RD04_RS14840 IPR008972 Cupredoxin RD04_RS14840 IPR010514 COX aromatic rich motif RD04_RS14840 IPR002429 Cytochrome c oxidase subunit II-like C-terminal RD04_RS14840 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain RD04_RS14840 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily RD04_RS14845 IPR011006 CheY-like superfamily RD04_RS14845 IPR001789 Signal transduction response regulator, receiver domain RD04_RS14860 IPR011051 RmlC-like cupin domain superfamily RD04_RS14860 IPR014710 RmlC-like jelly roll fold RD04_RS14860 IPR012093 Pirin RD04_RS14860 IPR008778 Pirin, C-terminal domain RD04_RS14860 IPR003829 Pirin, N-terminal domain RD04_RS14880 IPR023606 CoA-transferase family III domain superfamily RD04_RS14880 IPR003673 CoA-transferase family III RD04_RS14885 IPR000847 Transcription regulator HTH, LysR RD04_RS14885 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS14885 IPR005119 LysR, substrate-binding RD04_RS14885 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS14890 IPR005064 Bordetella uptake gene RD04_RS14890 IPR042100 Bordetella uptake gene, domain 1 RD04_RS14900 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS14900 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS14900 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS14900 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS14900 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS14900 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS14900 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS14900 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS14900 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS14900 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS14900 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS14900 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS14915 IPR024072 Dihydrofolate reductase-like domain superfamily RD04_RS14915 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal RD04_RS14915 IPR011549 Riboflavin-specific deaminase, C-terminal RD04_RS14915 IPR004794 Riboflavin biosynthesis protein RibD RD04_RS14915 IPR016193 Cytidine deaminase-like RD04_RS14915 IPR002125 Cytidine and deoxycytidylate deaminase domain RD04_RS14915 IPR016192 APOBEC/CMP deaminase, zinc-binding RD04_RS14930 IPR003796 Ribonucleotide reductase regulator NrdR-like RD04_RS14930 IPR005144 ATP-cone domain RD04_RS14935 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS14935 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS14935 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS14935 IPR001085 Serine hydroxymethyltransferase RD04_RS14935 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site RD04_RS14935 IPR039429 Serine hydroxymethyltransferase-like domain RD04_RS14945 IPR002942 RNA-binding S4 domain RD04_RS14945 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RD04_RS14945 IPR002305 Aminoacyl-tRNA synthetase, class Ic RD04_RS14945 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 RD04_RS14945 IPR024088 Tyrosine-tRNA ligase, bacterial-type RD04_RS14945 IPR002307 Tyrosine-tRNA ligase RD04_RS14945 IPR036986 RNA-binding S4 domain superfamily RD04_RS14945 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS14955 IPR003646 SH3-like domain, bacterial-type RD04_RS14955 IPR016047 Peptidase M23 RD04_RS14955 IPR011055 Duplicated hybrid motif RD04_RS14960 IPR005338 Anhydro-N-acetylmuramic acid kinase RD04_RS14965 IPR017870 FeS cluster insertion, C-terminal, conserved site RD04_RS14965 IPR023063 FeS cluster insertion protein ErpA RD04_RS14965 IPR035903 HesB-like domain superfamily RD04_RS14965 IPR000361 FeS cluster biogenesis RD04_RS14965 IPR016092 FeS cluster insertion protein RD04_RS14975 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site RD04_RS14975 IPR000534 Semialdehyde dehydrogenase, NAD-binding RD04_RS14975 IPR036291 NAD(P)-binding domain superfamily RD04_RS14975 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 RD04_RS14975 IPR012280 Semialdehyde dehydrogenase, dimerisation domain RD04_RS14980 IPR000754 Ribosomal protein S9 RD04_RS14980 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS14980 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS14980 IPR023035 Ribosomal protein S9, bacterial/plastid RD04_RS14980 IPR020574 Ribosomal protein S9, conserved site RD04_RS14985 IPR005822 Ribosomal protein L13 RD04_RS14985 IPR005823 Ribosomal protein L13, bacterial-type RD04_RS14985 IPR036899 Ribosomal protein L13 superfamily RD04_RS14990 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS14990 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS14990 IPR041722 Alpha-keto acid binding periplasmic protein RD04_RS14990 IPR026289 Solute binding protein, TakP-like RD04_RS14990 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS14995 IPR036059 Metalloprotease TldD/PmbA superfamily RD04_RS14995 IPR035068 Metalloprotease TldD/PmbA, N-terminal RD04_RS14995 IPR002510 Metalloprotease TldD/PmbA RD04_RS15000 IPR023153 PSPTO4464-like domain superfamily RD04_RS15000 IPR006839 Ribosome-associated, YjgA RD04_RS15005 IPR003140 Phospholipase/carboxylesterase/thioesterase RD04_RS15005 IPR029058 Alpha/Beta hydrolase fold RD04_RS15015 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15015 IPR003439 ABC transporter-like RD04_RS15015 IPR003593 AAA+ ATPase domain RD04_RS15015 IPR017871 ABC transporter, conserved site RD04_RS15020 IPR035906 MetI-like superfamily RD04_RS15020 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS15025 IPR019916 Isochorismatase, RutB RD04_RS15025 IPR000868 Isochorismatase-like RD04_RS15025 IPR036380 Isochorismatase-like superfamily RD04_RS15030 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RD04_RS15030 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD04_RS15030 IPR037523 Vicinal oxygen chelate (VOC) domain RD04_RS15035 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15035 IPR014014 RNA helicase, DEAD-box type, Q motif RD04_RS15035 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS15035 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain RD04_RS15035 IPR001650 Helicase, C-terminal RD04_RS15035 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RD04_RS15035 IPR028619 ATP-dependent RNA helicase DbpA RD04_RS15035 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RD04_RS15035 IPR011545 DEAD/DEAH box helicase domain RD04_RS15060 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 RD04_RS15060 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RD04_RS15060 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial RD04_RS15060 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS15060 IPR000924 Glutamyl/glutaminyl-tRNA synthetase RD04_RS15060 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RD04_RS15060 IPR033910 Glutamyl-tRNA synthetase RD04_RS15060 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding RD04_RS15075 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS15075 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS15075 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD04_RS15075 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD04_RS15075 IPR011008 Dimeric alpha-beta barrel RD04_RS15075 IPR000485 AsnC-type HTH domain RD04_RS15075 IPR019888 Transcription regulator AsnC-type RD04_RS15090 IPR013346 Ribonucleotide reductase, class I , alpha subunit RD04_RS15090 IPR005144 ATP-cone domain RD04_RS15090 IPR013509 Ribonucleotide reductase large subunit, N-terminal RD04_RS15090 IPR000788 Ribonucleotide reductase large subunit, C-terminal RD04_RS15090 IPR039718 Ribonucleoside-diphosphate reductase large subunit RD04_RS15090 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal RD04_RS15095 IPR009078 Ferritin-like superfamily RD04_RS15095 IPR012348 Ribonucleotide reductase-like RD04_RS15095 IPR033909 Ribonucleotide reductase small subunit RD04_RS15095 IPR000358 Ribonucleotide reductase small subunit family RD04_RS15110 IPR020845 AMP-binding, conserved site RD04_RS15110 IPR000873 AMP-dependent synthetase/ligase RD04_RS15110 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS15110 IPR010072 D-alanine--D-alanyl carrier protein ligase RD04_RS15110 IPR010071 Amino acid adenylation domain RD04_RS15110 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS15115 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB RD04_RS15115 IPR024024 D-alanyl transfer protein DltB RD04_RS15115 IPR004299 Membrane bound O-acyl transferase, MBOAT RD04_RS15140 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site RD04_RS15140 IPR011611 Carbohydrate kinase PfkB RD04_RS15140 IPR029056 Ribokinase-like RD04_RS15150 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS15150 IPR004498 Ribosomal protein L11 methyltransferase RD04_RS15155 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase RD04_RS15155 IPR011761 ATP-grasp fold RD04_RS15155 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS15155 IPR005481 Biotin carboxylase-like, N-terminal domain RD04_RS15155 IPR011764 Biotin carboxylation domain RD04_RS15155 IPR005482 Biotin carboxylase, C-terminal RD04_RS15155 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain RD04_RS15155 IPR016185 Pre-ATP-grasp domain superfamily RD04_RS15155 IPR011054 Rudiment single hybrid motif RD04_RS15160 IPR001249 Acetyl-CoA biotin carboxyl carrier RD04_RS15160 IPR011053 Single hybrid motif RD04_RS15160 IPR000089 Biotin/lipoyl attachment RD04_RS15160 IPR001882 Biotin-binding site RD04_RS15165 IPR018509 Dehydroquinase, class II, conserved site RD04_RS15165 IPR001874 Dehydroquinase, class II RD04_RS15165 IPR036441 Dehydroquinase, class II superfamily RD04_RS15170 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE RD04_RS15170 IPR013740 Redoxin RD04_RS15170 IPR036249 Thioredoxin-like superfamily RD04_RS15170 IPR013766 Thioredoxin domain RD04_RS15170 IPR017937 Thioredoxin, conserved site RD04_RS15175 IPR005757 Murein peptide ligase RD04_RS15175 IPR000713 Mur ligase, N-terminal catalytic domain RD04_RS15175 IPR004101 Mur ligase, C-terminal RD04_RS15175 IPR036615 Mur ligase, C-terminal domain superfamily RD04_RS15175 IPR013221 Mur ligase, central RD04_RS15175 IPR036565 Mur-like, catalytic domain superfamily RD04_RS15180 IPR029058 Alpha/Beta hydrolase fold RD04_RS15180 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA RD04_RS15185 IPR001900 Ribonuclease II/R RD04_RS15185 IPR012340 Nucleic acid-binding, OB-fold RD04_RS15195 IPR022893 Shikimate dehydrogenase family RD04_RS15195 IPR036291 NAD(P)-binding domain superfamily RD04_RS15195 IPR041121 SDH, C-terminal RD04_RS15195 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal RD04_RS15195 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RD04_RS15195 IPR011342 Shikimate dehydrogenase RD04_RS15210 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RD04_RS15210 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP RD04_RS15220 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS15220 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD04_RS15220 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD04_RS15220 IPR019888 Transcription regulator AsnC-type RD04_RS15220 IPR011008 Dimeric alpha-beta barrel RD04_RS15220 IPR000485 AsnC-type HTH domain RD04_RS15220 IPR011991 ArsR-like helix-turn-helix domain RD04_RS15220 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS15225 IPR023080 D-amino acid dehydrogenase DadA RD04_RS15225 IPR006076 FAD dependent oxidoreductase RD04_RS15225 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS15230 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS15230 IPR036291 NAD(P)-binding domain superfamily RD04_RS15230 IPR011283 Acetoacetyl-CoA reductase RD04_RS15230 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS15240 IPR005064 Bordetella uptake gene RD04_RS15240 IPR042100 Bordetella uptake gene, domain 1 RD04_RS15250 IPR000185 Protein translocase subunit SecA RD04_RS15250 IPR020937 SecA conserved site RD04_RS15250 IPR011115 SecA DEAD-like, N-terminal RD04_RS15250 IPR014018 SecA motor DEAD RD04_RS15250 IPR011130 SecA, preprotein cross-linking domain RD04_RS15250 IPR011116 SecA Wing/Scaffold RD04_RS15250 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15250 IPR004027 SEC-C motif RD04_RS15250 IPR036670 SecA, preprotein cross-linking domain superfamily RD04_RS15250 IPR036266 SecA, Wing/Scaffold superfamily RD04_RS15255 IPR018392 LysM domain RD04_RS15255 IPR016047 Peptidase M23 RD04_RS15255 IPR013731 Opacity-associated protein A, N-terminal RD04_RS15255 IPR011055 Duplicated hybrid motif RD04_RS15265 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS15265 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase RD04_RS15265 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal RD04_RS15265 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal RD04_RS15270 IPR020805 Cell division protein FtsZ, conserved site RD04_RS15270 IPR000158 Cell division protein FtsZ RD04_RS15270 IPR024757 Cell division protein FtsZ, C-terminal RD04_RS15270 IPR003008 Tubulin/FtsZ, GTPase domain RD04_RS15270 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RD04_RS15270 IPR036525 Tubulin/FtsZ, GTPase domain superfamily RD04_RS15270 IPR008280 Tubulin/FtsZ, C-terminal RD04_RS15275 IPR003494 SHS2 domain inserted in FtsA RD04_RS15275 IPR020823 Cell division protein FtsA RD04_RS15280 IPR026579 Cell division protein FtsQ RD04_RS15280 IPR013685 POTRA domain, FtsQ-type RD04_RS15280 IPR034746 POTRA domain RD04_RS15280 IPR005548 Cell division protein FtsQ/DivIB RD04_RS15285 IPR016185 Pre-ATP-grasp domain superfamily RD04_RS15285 IPR011095 D-alanine--D-alanine ligase, C-terminal RD04_RS15285 IPR005905 D-alanine--D-alanine ligase RD04_RS15285 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site RD04_RS15285 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS15285 IPR011761 ATP-grasp fold RD04_RS15285 IPR011127 D-alanine--D-alanine ligase, N-terminal domain RD04_RS15290 IPR036615 Mur ligase, C-terminal domain superfamily RD04_RS15290 IPR036565 Mur-like, catalytic domain superfamily RD04_RS15290 IPR004101 Mur ligase, C-terminal RD04_RS15290 IPR013221 Mur ligase, central RD04_RS15290 IPR005758 UDP-N-acetylmuramate--L-alanine ligase RD04_RS15290 IPR000713 Mur ligase, N-terminal catalytic domain RD04_RS15295 IPR004276 Glycosyltransferase family 28, N-terminal domain RD04_RS15295 IPR007235 Glycosyl transferase, family 28, C-terminal RD04_RS15295 IPR006009 N-acetylglucosaminyltransferase, MurG RD04_RS15300 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA RD04_RS15300 IPR013437 Probable peptidoglycan glycosyltransferase FtsW RD04_RS15305 IPR036615 Mur ligase, C-terminal domain superfamily RD04_RS15305 IPR018109 Folylpolyglutamate synthetase, conserved site RD04_RS15305 IPR013221 Mur ligase, central RD04_RS15305 IPR036565 Mur-like, catalytic domain superfamily RD04_RS15305 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase RD04_RS15305 IPR004101 Mur ligase, C-terminal RD04_RS15310 IPR000715 Glycosyl transferase, family 4 RD04_RS15310 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase RD04_RS15310 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site RD04_RS15315 IPR013221 Mur ligase, central RD04_RS15315 IPR036615 Mur ligase, C-terminal domain superfamily RD04_RS15315 IPR035911 MurE/MurF, N-terminal RD04_RS15315 IPR036565 Mur-like, catalytic domain superfamily RD04_RS15315 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase RD04_RS15315 IPR004101 Mur ligase, C-terminal RD04_RS15320 IPR005311 Penicillin-binding protein, dimerisation domain RD04_RS15320 IPR036138 Penicillin-binding protein, dimerisation domain superfamily RD04_RS15320 IPR001460 Penicillin-binding protein, transpeptidase RD04_RS15320 IPR037532 Peptidoglycan D,D-transpeptidase FtsI RD04_RS15320 IPR012338 Beta-lactamase/transpeptidase-like RD04_RS15325 IPR011922 Cell division protein FtsL RD04_RS15330 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS15330 IPR002903 Ribosomal RNA small subunit methyltransferase H RD04_RS15330 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily RD04_RS15335 IPR003444 Transcriptional regulator MraZ RD04_RS15335 IPR037914 SpoVT-AbrB domain superfamily RD04_RS15335 IPR007159 SpoVT-AbrB domain RD04_RS15335 IPR035644 MraZ, C-terminal RD04_RS15335 IPR020603 MraZ domain RD04_RS15335 IPR035642 MraZ, N-terminal RD04_RS15335 IPR038619 MraZ superfamily RD04_RS15345 IPR032781 ABC-transporter extension domain RD04_RS15345 IPR003439 ABC transporter-like RD04_RS15345 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily RD04_RS15345 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15345 IPR017871 ABC transporter, conserved site RD04_RS15345 IPR032524 ABC transporter Uup, C-terminal RD04_RS15345 IPR003593 AAA+ ATPase domain RD04_RS15350 IPR032466 Metal-dependent hydrolase RD04_RS15350 IPR006680 Amidohydrolase-related RD04_RS15350 IPR004721 Dihydroorotase homodimeric type RD04_RS15350 IPR002195 Dihydroorotase, conserved site RD04_RS15355 IPR017439 Amidohydrolase RD04_RS15355 IPR036264 Bacterial exopeptidase dimerisation domain RD04_RS15355 IPR011650 Peptidase M20, dimerisation domain RD04_RS15355 IPR002933 Peptidase M20 RD04_RS15395 IPR019888 Transcription regulator AsnC-type RD04_RS15395 IPR000485 AsnC-type HTH domain RD04_RS15395 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS15395 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS15395 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD04_RS15395 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD04_RS15395 IPR011008 Dimeric alpha-beta barrel RD04_RS15395 IPR011991 ArsR-like helix-turn-helix domain RD04_RS15400 IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal RD04_RS15400 IPR005956 4-hydroxyphenylpyruvate dioxygenase RD04_RS15400 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RD04_RS15400 IPR037523 Vicinal oxygen chelate (VOC) domain RD04_RS15400 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD04_RS15400 IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal RD04_RS15405 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily RD04_RS15405 IPR002569 Peptide methionine sulphoxide reductase MsrA RD04_RS15410 IPR002324 Cytochrome c, class ID RD04_RS15410 IPR036909 Cytochrome c-like domain superfamily RD04_RS15410 IPR009056 Cytochrome c-like domain RD04_RS15415 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site RD04_RS15415 IPR004404 Dihydroxy-acid dehydratase RD04_RS15415 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase RD04_RS15415 IPR037237 IlvD/EDD, N-terminal domain RD04_RS15415 IPR042096 Dihydroxy-acid dehydratase, C-terminal RD04_RS15420 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt RD04_RS15465 IPR002823 Protein of unknown function DUF112, transmembrane RD04_RS15470 IPR029055 Nucleophile aminohydrolases, N-terminal RD04_RS15475 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain RD04_RS15475 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS15475 IPR013328 6-phosphogluconate dehydrogenase, domain 2 RD04_RS15475 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding RD04_RS15475 IPR015815 3-hydroxyisobutyrate dehydrogenase-related RD04_RS15475 IPR036291 NAD(P)-binding domain superfamily RD04_RS15475 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site RD04_RS15480 IPR003680 Flavodoxin-like fold RD04_RS15480 IPR029039 Flavoprotein-like superfamily RD04_RS15480 IPR023048 NADH-azoreductase, FMN-dependent RD04_RS15490 IPR005122 Uracil-DNA glycosylase-like RD04_RS15490 IPR018085 Uracil-DNA glycosylase, active site RD04_RS15490 IPR002043 Uracil-DNA glycosylase family 1 RD04_RS15490 IPR036895 Uracil-DNA glycosylase-like domain superfamily RD04_RS15495 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RD04_RS15495 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15495 IPR014014 RNA helicase, DEAD-box type, Q motif RD04_RS15495 IPR011545 DEAD/DEAH box helicase domain RD04_RS15495 IPR001650 Helicase, C-terminal RD04_RS15495 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS15495 IPR028622 ATP-dependent RNA helicase RhlE RD04_RS15505 IPR012006 tRNA nucleotidyltransferase, proteobacteria RD04_RS15505 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain RD04_RS15505 IPR002646 Poly A polymerase, head domain RD04_RS15510 IPR012289 Lytic transglycosylase, superhelical linker RD04_RS15510 IPR008258 Transglycosylase SLT domain 1 RD04_RS15510 IPR023346 Lysozyme-like domain superfamily RD04_RS15510 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily RD04_RS15510 IPR008939 Lytic transglycosylase, superhelical U-shaped RD04_RS15510 IPR000189 Prokaryotic transglycosylase, active site RD04_RS15520 IPR005829 Sugar transporter, conserved site RD04_RS15520 IPR020846 Major facilitator superfamily domain RD04_RS15520 IPR011701 Major facilitator superfamily RD04_RS15520 IPR005828 Major facilitator, sugar transporter-like RD04_RS15520 IPR036259 MFS transporter superfamily RD04_RS15520 IPR004736 MFS transporter, metabolite:H symporter RD04_RS15525 IPR000286 Histone deacetylase family RD04_RS15525 IPR023696 Ureohydrolase domain superfamily RD04_RS15525 IPR037138 Histone deacetylase domain superfamily RD04_RS15525 IPR023801 Histone deacetylase domain RD04_RS15530 IPR000847 Transcription regulator HTH, LysR RD04_RS15530 IPR005119 LysR, substrate-binding RD04_RS15530 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS15530 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS15540 IPR004620 5,10-methylenetetrahydrofolate reductase RD04_RS15540 IPR003171 Methylenetetrahydrofolate reductase RD04_RS15540 IPR029041 FAD-linked oxidoreductase-like RD04_RS15545 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV RD04_RS15550 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site RD04_RS15550 IPR000043 Adenosylhomocysteinase-like RD04_RS15550 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RD04_RS15550 IPR042172 Adenosylhomocysteinase-like superfamily RD04_RS15550 IPR036291 NAD(P)-binding domain superfamily RD04_RS15555 IPR001296 Glycosyl transferase, family 1 RD04_RS15555 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RD04_RS15555 IPR017814 Mycothiol biosynthesis protein, MshA RD04_RS15565 IPR022629 S-adenosylmethionine synthetase, central domain RD04_RS15565 IPR022631 S-adenosylmethionine synthetase, conserved site RD04_RS15565 IPR022630 S-adenosylmethionine synthetase, C-terminal RD04_RS15565 IPR002133 S-adenosylmethionine synthetase RD04_RS15565 IPR022628 S-adenosylmethionine synthetase, N-terminal RD04_RS15565 IPR022636 S-adenosylmethionine synthetase superfamily RD04_RS15575 IPR004960 Bacterial lipid A biosynthesis acyltransferase RD04_RS15575 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP RD04_RS15575 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase RD04_RS15580 IPR018510 Diaminopimelate epimerase, active site RD04_RS15580 IPR001653 Diaminopimelate epimerase, DapF RD04_RS15590 IPR011010 DNA breaking-rejoining enzyme, catalytic core RD04_RS15590 IPR010998 Integrase/recombinase, N-terminal RD04_RS15590 IPR004107 Integrase, SAM-like, N-terminal RD04_RS15590 IPR011931 Tyrosine recombinase XerC RD04_RS15590 IPR023009 Tyrosine recombinase XerC/XerD RD04_RS15590 IPR002104 Integrase, catalytic domain RD04_RS15590 IPR013762 Integrase-like, catalytic domain superfamily RD04_RS15595 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS15595 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS15595 IPR039426 Vitamin B12 transporter BtuB-like RD04_RS15595 IPR012910 TonB-dependent receptor, plug domain RD04_RS15600 IPR011541 Nickel/cobalt transporter, high-affinity RD04_RS15610 IPR006127 Periplasmic solute binding protein, ZnuA-like RD04_RS15610 IPR006129 Adhesin B RD04_RS15610 IPR006128 Adhesion lipoprotein RD04_RS15615 IPR001626 ABC transporter, TroCD-like RD04_RS15615 IPR037294 ABC transporter, BtuC-like RD04_RS15620 IPR003593 AAA+ ATPase domain RD04_RS15620 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15620 IPR017871 ABC transporter, conserved site RD04_RS15620 IPR003439 ABC transporter-like RD04_RS15630 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS15630 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS15630 IPR002481 Ferric-uptake regulator RD04_RS15635 IPR036627 CobW-like, C-terminal domain superfamily RD04_RS15635 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RD04_RS15635 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15635 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RD04_RS15640 IPR000962 Zinc finger, DksA/TraR C4-type RD04_RS15640 IPR012784 RNA polymerase-binding transcription factor DksA RD04_RS15640 IPR037187 DksA, N-terminal domain superfamily RD04_RS15640 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RD04_RS15645 IPR022281 ATP-dependent protease, HslV subunit RD04_RS15645 IPR023333 Proteasome B-type subunit RD04_RS15645 IPR001353 Proteasome, subunit alpha/beta RD04_RS15645 IPR029055 Nucleophile aminohydrolases, N-terminal RD04_RS15650 IPR004491 Heat shock protein HslU RD04_RS15650 IPR003959 ATPase, AAA-type, core RD04_RS15650 IPR019489 Clp ATPase, C-terminal RD04_RS15650 IPR003593 AAA+ ATPase domain RD04_RS15650 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15660 IPR016030 Cobalamin adenosyltransferase-like RD04_RS15660 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type RD04_RS15660 IPR036451 Cobalamin adenosyltransferase-like superfamily RD04_RS15670 IPR001736 Phospholipase D/Transphosphatidylase RD04_RS15670 IPR030871 Cardiolipin synthase C RD04_RS15670 IPR025202 Phospholipase D-like domain RD04_RS15675 IPR003593 AAA+ ATPase domain RD04_RS15675 IPR004606 Molybdenum-pterin binding RD04_RS15675 IPR003439 ABC transporter-like RD04_RS15675 IPR017871 ABC transporter, conserved site RD04_RS15675 IPR015852 ABC transporter, molybdenum import, ModC RD04_RS15675 IPR008995 Molybdate/tungstate binding, C-terminal RD04_RS15675 IPR005116 Transport-associated OB, type 1 RD04_RS15675 IPR011868 Molybdate ABC transporter, ATP-binding protein RD04_RS15675 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15680 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS15680 IPR035906 MetI-like superfamily RD04_RS15680 IPR011867 Molybdate ABC transporter, permease protein RD04_RS15685 IPR005950 Molybdate ABC transporter, substrate-binding protein RD04_RS15690 IPR029058 Alpha/Beta hydrolase fold RD04_RS15690 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS15690 IPR023489 Haloalkane dehalogenase, subfamily 1 RD04_RS15690 IPR000639 Epoxide hydrolase-like RD04_RS15735 IPR001123 Amino acid exporter protein, LeuE-type RD04_RS15740 IPR005950 Molybdate ABC transporter, substrate-binding protein RD04_RS15745 IPR005064 Bordetella uptake gene RD04_RS15745 IPR042100 Bordetella uptake gene, domain 1 RD04_RS15750 IPR029055 Nucleophile aminohydrolases, N-terminal RD04_RS15750 IPR000101 Gamma-glutamyltranspeptidase RD04_RS15760 IPR006076 FAD dependent oxidoreductase RD04_RS15760 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS15785 IPR041474 HTH-type transcriptional repressor NicS, C-terminal RD04_RS15785 IPR001647 DNA-binding HTH domain, TetR-type RD04_RS15785 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RD04_RS15785 IPR009057 Homeobox-like domain superfamily RD04_RS15800 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS15800 IPR011006 CheY-like superfamily RD04_RS15800 IPR001789 Signal transduction response regulator, receiver domain RD04_RS15800 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS15800 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS15810 IPR006315 Outer membrane autotransporter barrel RD04_RS15810 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS15810 IPR036709 Autotransporter beta-domain superfamily RD04_RS15810 IPR013425 Autotransporter-associated beta strand repeat RD04_RS15810 IPR005546 Autotransporter beta-domain RD04_RS15810 IPR011050 Pectin lyase fold/virulence factor RD04_RS15820 IPR000212 DNA helicase, UvrD/REP type RD04_RS15820 IPR013986 DExx box DNA helicase domain superfamily RD04_RS15820 IPR014016 UvrD-like helicase, ATP-binding domain RD04_RS15820 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15820 IPR034739 UvrD/AddA helicase, N-terminal RD04_RS15820 IPR014017 UvrD-like DNA helicase, C-terminal RD04_RS15845 IPR001238 DNA-binding, RecF RD04_RS15845 IPR042174 DNA-binding RecF, domain 2 RD04_RS15845 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15845 IPR018078 DNA-binding, RecF, conserved site RD04_RS15845 IPR041685 AAA domain, group 15 RD04_RS15850 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RD04_RS15850 IPR002941 DNA methylase N-4/N-6 RD04_RS15850 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class RD04_RS15850 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS15865 IPR025166 Integrase, DNA-binding domain RD04_RS15865 IPR010998 Integrase/recombinase, N-terminal RD04_RS15865 IPR011010 DNA breaking-rejoining enzyme, catalytic core RD04_RS15865 IPR038488 Integrase, DNA-binding domain superfamily RD04_RS15865 IPR002104 Integrase, catalytic domain RD04_RS15865 IPR013762 Integrase-like, catalytic domain superfamily RD04_RS15870 IPR031167 OBG-type guanine nucleotide-binding (G) domain RD04_RS15870 IPR041706 YchF, N-terminal RD04_RS15870 IPR013029 YchF, C-terminal domain RD04_RS15870 IPR023192 TGS-like domain superfamily RD04_RS15870 IPR012676 TGS-like RD04_RS15870 IPR004095 TGS RD04_RS15870 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS15870 IPR006073 GTP binding domain RD04_RS15870 IPR012675 Beta-grasp domain superfamily RD04_RS15870 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 RD04_RS15880 IPR001328 Peptidyl-tRNA hydrolase RD04_RS15880 IPR036416 Peptidyl-tRNA hydrolase superfamily RD04_RS15880 IPR018171 Peptidyl-tRNA hydrolase, conserved site RD04_RS15885 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal RD04_RS15885 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily RD04_RS15885 IPR020057 Ribosomal protein L25, beta domain RD04_RS15885 IPR037121 Ribosomal protein L25, C-terminal RD04_RS15885 IPR001021 Ribosomal protein L25, long-form RD04_RS15885 IPR020055 Ribosomal protein L25, short-form RD04_RS15885 IPR029751 Ribosomal protein L25 RD04_RS15890 IPR029057 Phosphoribosyltransferase-like RD04_RS15890 IPR000836 Phosphoribosyltransferase domain RD04_RS15890 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain RD04_RS15890 IPR005946 Ribose-phosphate pyrophosphokinase RD04_RS15890 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type RD04_RS15890 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site RD04_RS15900 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase RD04_RS15900 IPR013750 GHMP kinase, C-terminal domain RD04_RS15900 IPR036554 GHMP kinase, C-terminal domain superfamily RD04_RS15900 IPR006204 GHMP kinase N-terminal domain RD04_RS15900 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS15900 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS15905 IPR029046 Lipoprotein localisation LolA/LolB/LppX RD04_RS15905 IPR004565 Outer membrane lipoprotein LolB RD04_RS15910 IPR011990 Tetratricopeptide-like helical domain superfamily RD04_RS15910 IPR019734 Tetratricopeptide repeat RD04_RS15910 IPR013026 Tetratricopeptide repeat-containing domain RD04_RS15915 IPR035937 MutM-like, N-terminal RD04_RS15915 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain RD04_RS15915 IPR010979 Ribosomal protein S13-like, H2TH RD04_RS15915 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding RD04_RS15915 IPR020629 Formamidopyrimidine-DNA glycosylase RD04_RS15915 IPR010663 Zinc finger, FPG/IleRS-type RD04_RS15915 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type RD04_RS15915 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site RD04_RS15925 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS15925 IPR002938 FAD-binding domain RD04_RS15935 IPR005119 LysR, substrate-binding RD04_RS15935 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS15935 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS15935 IPR000847 Transcription regulator HTH, LysR RD04_RS15940 IPR005708 Homogentisate 1,2-dioxygenase RD04_RS15940 IPR022950 Homogentisate 1,2-dioxygenase, bacterial RD04_RS15940 IPR011051 RmlC-like cupin domain superfamily RD04_RS15940 IPR014710 RmlC-like jelly roll fold RD04_RS15950 IPR012160 Lipoteichoic acid synthase-like RD04_RS15950 IPR017850 Alkaline-phosphatase-like, core domain superfamily RD04_RS15950 IPR000917 Sulfatase, N-terminal RD04_RS15955 IPR003660 HAMP domain RD04_RS15955 IPR013727 Two-component sensor kinase, N-terminal RD04_RS15955 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS15955 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS15955 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS15955 IPR005467 Histidine kinase domain RD04_RS15955 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS15955 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS15960 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS15960 IPR001789 Signal transduction response regulator, receiver domain RD04_RS15960 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS15960 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS15960 IPR011006 CheY-like superfamily RD04_RS15965 IPR006094 FAD linked oxidase, N-terminal RD04_RS15965 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS15965 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RD04_RS15965 IPR016166 FAD-binding domain, PCMH-type RD04_RS15965 IPR004113 FAD-linked oxidase, C-terminal RD04_RS15965 IPR004490 Glycolate oxidase subunit GlcD RD04_RS15965 IPR016164 FAD-linked oxidase-like, C-terminal RD04_RS15975 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I RD04_RS15975 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II RD04_RS15975 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III RD04_RS15975 IPR005843 Alpha-D-phosphohexomutase, C-terminal RD04_RS15975 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III RD04_RS15975 IPR016066 Alpha-D-phosphohexomutase, conserved site RD04_RS15975 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily RD04_RS15975 IPR005841 Alpha-D-phosphohexomutase superfamily RD04_RS15980 IPR018189 Phosphoglucose isomerase, conserved site RD04_RS15980 IPR035476 Phosphoglucose isomerase, SIS domain 1 RD04_RS15980 IPR023096 Phosphoglucose isomerase, C-terminal RD04_RS15980 IPR001672 Phosphoglucose isomerase (PGI) RD04_RS15980 IPR035482 Phosphoglucose isomerase, SIS domain 2 RD04_RS15985 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RD04_RS15985 IPR001296 Glycosyl transferase, family 1 RD04_RS15990 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RD04_RS15990 IPR001296 Glycosyl transferase, family 1 RD04_RS15995 IPR001296 Glycosyl transferase, family 1 RD04_RS15995 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RD04_RS16000 IPR001962 Asparagine synthase RD04_RS16000 IPR033738 Asparagine synthase, N-terminal domain RD04_RS16000 IPR017932 Glutamine amidotransferase type 2 domain RD04_RS16000 IPR006426 Asparagine synthase, glutamine-hydrolyzing RD04_RS16000 IPR029055 Nucleophile aminohydrolases, N-terminal RD04_RS16005 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RD04_RS16005 IPR001296 Glycosyl transferase, family 1 RD04_RS16010 IPR004268 Peptidoglycan biosynthesis protein MurJ RD04_RS16015 IPR036291 NAD(P)-binding domain superfamily RD04_RS16015 IPR001509 NAD-dependent epimerase/dehydratase RD04_RS16020 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal RD04_RS16020 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily RD04_RS16020 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation RD04_RS16020 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase RD04_RS16020 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal RD04_RS16020 IPR036291 NAD(P)-binding domain superfamily RD04_RS16020 IPR017476 UDP-glucose/GDP-mannose dehydrogenase RD04_RS16020 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS16025 IPR000715 Glycosyl transferase, family 4 RD04_RS16030 IPR011566 Ubiquinone biosynthesis protein Coq7 RD04_RS16030 IPR009078 Ferritin-like superfamily RD04_RS16030 IPR012347 Ferritin-like RD04_RS16040 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain RD04_RS16040 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily RD04_RS16040 IPR020940 Thymidylate synthase, active site RD04_RS16040 IPR000398 Thymidylate synthase RD04_RS16045 IPR024072 Dihydrofolate reductase-like domain superfamily RD04_RS16045 IPR012259 Dihydrofolate reductase RD04_RS16045 IPR017925 Dihydrofolate reductase conserved site RD04_RS16045 IPR001796 Dihydrofolate reductase domain RD04_RS16050 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS16050 IPR000524 Transcription regulator HTH, GntR RD04_RS16050 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS16050 IPR004839 Aminotransferase, class I/classII RD04_RS16050 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS16050 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS16050 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS16055 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS16055 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS16055 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS16055 IPR005814 Aminotransferase class-III RD04_RS16060 IPR015590 Aldehyde dehydrogenase domain RD04_RS16060 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS16060 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS16060 IPR016160 Aldehyde dehydrogenase, cysteine active site RD04_RS16060 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS16060 IPR010061 Methylmalonate-semialdehyde dehydrogenase RD04_RS16065 IPR023765 Solute-binding protein family 5, conserved site RD04_RS16065 IPR000914 Solute-binding protein family 5 domain RD04_RS16065 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS16065 IPR039424 Solute-binding protein family 5 RD04_RS16065 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS16070 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS16070 IPR035906 MetI-like superfamily RD04_RS16075 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS16075 IPR035906 MetI-like superfamily RD04_RS16085 IPR009197 Microcystin LR degradation protein MlrC RD04_RS16085 IPR010799 Microcystin LR degradation protein MlrC, C-terminal RD04_RS16085 IPR015995 Microcystin LR degradation protein MlrC, N-terminal RD04_RS16095 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RD04_RS16095 IPR004400 Urease accessory protein UreG RD04_RS16095 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16100 IPR038277 UreF domain superfamily RD04_RS16100 IPR002639 Urease accessory protein UreF RD04_RS16105 IPR036118 UreE urease accessory, N-terminal domain superfamily RD04_RS16105 IPR007864 Urease accessory protein UreE, C-terminal domain RD04_RS16105 IPR004029 UreE urease accessory, N-terminal RD04_RS16105 IPR036675 UreE, C-terminal domain superfamily RD04_RS16105 IPR012406 Urease accessory protein UreE RD04_RS16110 IPR011059 Metal-dependent hydrolase, composite domain superfamily RD04_RS16110 IPR006680 Amidohydrolase-related RD04_RS16110 IPR029754 Urease nickel binding site RD04_RS16110 IPR017951 Urease alpha subunit, C-terminal RD04_RS16110 IPR005848 Urease, alpha subunit RD04_RS16110 IPR017950 Urease active site RD04_RS16110 IPR011612 Urease alpha-subunit, N-terminal domain RD04_RS16110 IPR032466 Metal-dependent hydrolase RD04_RS16115 IPR036461 Urease, beta subunit superfamily RD04_RS16115 IPR002019 Urease, beta subunit RD04_RS16120 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein RD04_RS16125 IPR036463 Urease, gamma subunit superfamily RD04_RS16125 IPR002026 Urease, gamma/gamma-beta subunit RD04_RS16125 IPR012010 Urease, gamma subunit RD04_RS16130 IPR002669 Urease accessory protein UreD RD04_RS16135 IPR009061 Putative DNA-binding domain superfamily RD04_RS16135 IPR000551 MerR-type HTH domain RD04_RS16135 IPR011789 Cu(I)-responsive transcriptional regulator RD04_RS16135 IPR015358 Transcription regulator MerR, DNA binding RD04_RS16140 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS16140 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS16140 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria RD04_RS16140 IPR001055 Adrenodoxin RD04_RS16140 IPR018298 Adrenodoxin, iron-sulphur binding site RD04_RS16140 IPR012675 Beta-grasp domain superfamily RD04_RS16155 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RD04_RS16155 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS16155 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS16155 IPR011663 UbiC transcription regulator-associated RD04_RS16155 IPR000524 Transcription regulator HTH, GntR RD04_RS16160 IPR036849 Enolase-like, C-terminal domain superfamily RD04_RS16160 IPR022662 Methylaspartate ammonia-lyase, C-terminal RD04_RS16160 IPR006395 Methylaspartate ammonia-lyase RD04_RS16160 IPR029017 Enolase-like, N-terminal RD04_RS16160 IPR022665 Methylaspartate ammonia-lyase, N-terminal RD04_RS16165 IPR042100 Bordetella uptake gene, domain 1 RD04_RS16165 IPR005064 Bordetella uptake gene RD04_RS16180 IPR007390 Sporulation stage V, protein R RD04_RS16185 IPR036465 von Willebrand factor A-like domain superfamily RD04_RS16185 IPR006698 Uncharacterised protein family UPF0229 RD04_RS16200 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS16200 IPR036291 NAD(P)-binding domain superfamily RD04_RS16205 IPR003673 CoA-transferase family III RD04_RS16205 IPR023606 CoA-transferase family III domain superfamily RD04_RS16210 IPR000873 AMP-dependent synthetase/ligase RD04_RS16210 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS16210 IPR011880 Phenylacetate-CoA ligase RD04_RS16210 IPR028154 AMP-dependent ligase, C-terminal RD04_RS16215 IPR009057 Homeobox-like domain superfamily RD04_RS16215 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RD04_RS16215 IPR013572 Transcription regulator MAATS, C-terminal RD04_RS16215 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RD04_RS16215 IPR001647 DNA-binding HTH domain, TetR-type RD04_RS16220 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS16220 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS16220 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS16220 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS16220 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS16220 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS16220 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS16230 IPR001851 ABC transporter, permease RD04_RS16235 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16235 IPR017871 ABC transporter, conserved site RD04_RS16235 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS16235 IPR003593 AAA+ ATPase domain RD04_RS16235 IPR003439 ABC transporter-like RD04_RS16240 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16240 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS16240 IPR017871 ABC transporter, conserved site RD04_RS16240 IPR003439 ABC transporter-like RD04_RS16240 IPR003593 AAA+ ATPase domain RD04_RS16250 IPR036291 NAD(P)-binding domain superfamily RD04_RS16250 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS16250 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS16255 IPR022852 Carnitinyl-CoA dehydratase RD04_RS16255 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS16255 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS16255 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS16255 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS16265 IPR002155 Thiolase RD04_RS16265 IPR012806 Acetyl-CoA C-acyltransferase FadI RD04_RS16265 IPR016039 Thiolase-like RD04_RS16265 IPR020610 Thiolase, active site RD04_RS16265 IPR020617 Thiolase, C-terminal RD04_RS16265 IPR020613 Thiolase, conserved site RD04_RS16265 IPR020616 Thiolase, N-terminal RD04_RS16270 IPR002539 MaoC-like dehydratase domain RD04_RS16270 IPR029069 HotDog domain superfamily RD04_RS16315 IPR022892 Ribonuclease HI RD04_RS16315 IPR036397 Ribonuclease H superfamily RD04_RS16315 IPR002156 Ribonuclease H domain RD04_RS16315 IPR012337 Ribonuclease H-like superfamily RD04_RS16320 IPR013216 Methyltransferase type 11 RD04_RS16320 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS16320 IPR026669 Arsenite methyltransferase-like RD04_RS16325 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RD04_RS16325 IPR001279 Metallo-beta-lactamase RD04_RS16325 IPR017782 Hydroxyacylglutathione hydrolase RD04_RS16325 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain RD04_RS16325 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain RD04_RS16330 IPR018392 LysM domain RD04_RS16330 IPR008258 Transglycosylase SLT domain 1 RD04_RS16330 IPR036779 LysM domain superfamily RD04_RS16330 IPR023346 Lysozyme-like domain superfamily RD04_RS16330 IPR000189 Prokaryotic transglycosylase, active site RD04_RS16335 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS16335 IPR036291 NAD(P)-binding domain superfamily RD04_RS16335 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) RD04_RS16350 IPR029024 TerB-like RD04_RS16350 IPR007486 Inner membrane protein YebE RD04_RS16355 IPR042100 Bordetella uptake gene, domain 1 RD04_RS16355 IPR005064 Bordetella uptake gene RD04_RS16370 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS16370 IPR011006 CheY-like superfamily RD04_RS16370 IPR001789 Signal transduction response regulator, receiver domain RD04_RS16370 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS16370 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS16370 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS16375 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS16375 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS16375 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal RD04_RS16375 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS16375 IPR025201 Sensor protein KdpD, transmembrane domain RD04_RS16375 IPR005467 Histidine kinase domain RD04_RS16375 IPR038318 KdpD, transmembrane domain superfamily RD04_RS16385 IPR002585 Cytochrome ubiquinol oxidase subunit 1 RD04_RS16390 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RD04_RS16390 IPR000924 Glutamyl/glutaminyl-tRNA synthetase RD04_RS16390 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS16390 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily RD04_RS16390 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal RD04_RS16390 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RD04_RS16390 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily RD04_RS16390 IPR022861 Glutamine-tRNA ligase, bacterial RD04_RS16390 IPR004514 Glutamine-tRNA synthetase RD04_RS16390 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain RD04_RS16395 IPR005526 Septum formation inhibitor MinC, C-terminal RD04_RS16395 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily RD04_RS16395 IPR007874 Septum formation inhibitor MinC, N-terminal RD04_RS16395 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily RD04_RS16395 IPR013033 Septum formation inhibitor MinC RD04_RS16395 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal RD04_RS16400 IPR025501 ATP binding protein MinD RD04_RS16400 IPR010223 ATP binding protein MinD, bacterial-type RD04_RS16400 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RD04_RS16400 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16405 IPR005527 Cell division topological specificity factor MinE RD04_RS16405 IPR036707 Cell division topological specificity factor MinE superfamily RD04_RS16425 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16425 IPR003593 AAA+ ATPase domain RD04_RS16425 IPR032781 ABC-transporter extension domain RD04_RS16425 IPR003439 ABC transporter-like RD04_RS16425 IPR022374 Energy-dependent translational throttle protein EttA RD04_RS16425 IPR017871 ABC transporter, conserved site RD04_RS16435 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS16435 IPR035906 MetI-like superfamily RD04_RS16440 IPR039424 Solute-binding protein family 5 RD04_RS16440 IPR023765 Solute-binding protein family 5, conserved site RD04_RS16440 IPR000914 Solute-binding protein family 5 domain RD04_RS16440 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS16445 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS16445 IPR001173 Glycosyltransferase 2-like RD04_RS16450 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS16450 IPR005119 LysR, substrate-binding RD04_RS16450 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS16450 IPR000847 Transcription regulator HTH, LysR RD04_RS16460 IPR004602 UvrABC system subunit A RD04_RS16460 IPR041102 UvrA, interaction domain RD04_RS16460 IPR041552 UvrA DNA-binding domain RD04_RS16460 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16460 IPR017871 ABC transporter, conserved site RD04_RS16460 IPR003439 ABC transporter-like RD04_RS16460 IPR003593 AAA+ ATPase domain RD04_RS16465 IPR005802 Aminodeoxychorismate synthase, component I RD04_RS16465 IPR005801 ADC synthase RD04_RS16465 IPR019999 Anthranilate synthase component I-like RD04_RS16465 IPR006805 Anthranilate synthase component I, N-terminal RD04_RS16465 IPR015890 Chorismate-utilising enzyme, C-terminal RD04_RS16470 IPR001544 Aminotransferase class IV RD04_RS16470 IPR036038 Aminotransferase-like, PLP-dependent enzymes RD04_RS16480 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS16480 IPR036291 NAD(P)-binding domain superfamily RD04_RS16485 IPR042100 Bordetella uptake gene, domain 1 RD04_RS16485 IPR005064 Bordetella uptake gene RD04_RS16490 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS16490 IPR020845 AMP-binding, conserved site RD04_RS16490 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS16490 IPR010192 2-succinylbenzoate--CoA ligase RD04_RS16490 IPR000873 AMP-dependent synthetase/ligase RD04_RS16495 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RD04_RS16495 IPR011663 UbiC transcription regulator-associated RD04_RS16495 IPR000524 Transcription regulator HTH, GntR RD04_RS16495 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS16495 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS16500 IPR000594 THIF-type NAD/FAD binding fold RD04_RS16500 IPR035985 Ubiquitin-activating enzyme RD04_RS16505 IPR020846 Major facilitator superfamily domain RD04_RS16505 IPR011701 Major facilitator superfamily RD04_RS16505 IPR036259 MFS transporter superfamily RD04_RS16505 IPR005829 Sugar transporter, conserved site RD04_RS16505 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG RD04_RS16505 IPR004734 Multidrug resistance protein RD04_RS16515 IPR012349 FMN-binding split barrel RD04_RS16515 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal RD04_RS16515 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative RD04_RS16515 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site RD04_RS16515 IPR000659 Pyridoxamine 5'-phosphate oxidase RD04_RS16520 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS16520 IPR012349 FMN-binding split barrel RD04_RS16520 IPR002563 Flavin reductase like domain RD04_RS16520 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS16530 IPR002912 ACT domain RD04_RS16530 IPR036477 Formyl transferase, N-terminal domain superfamily RD04_RS16530 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain RD04_RS16530 IPR002376 Formyl transferase, N-terminal RD04_RS16530 IPR004810 Formyltetrahydrofolate deformylase RD04_RS16535 IPR000847 Transcription regulator HTH, LysR RD04_RS16535 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS16535 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS16535 IPR005119 LysR, substrate-binding RD04_RS16535 IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain RD04_RS16540 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS16540 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS16540 IPR041504 Adaptive response protein AidB, N-terminal RD04_RS16540 IPR034184 Putative acyl-CoA dehydrogenase AidB RD04_RS16540 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS16540 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS16540 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS16565 IPR011060 Ribulose-phosphate binding barrel RD04_RS16565 IPR013785 Aldolase-type TIM barrel RD04_RS16565 IPR001468 Indole-3-glycerol phosphate synthase, conserved site RD04_RS16565 IPR013798 Indole-3-glycerol phosphate synthase RD04_RS16570 IPR005940 Anthranilate phosphoribosyl transferase RD04_RS16570 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily RD04_RS16570 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily RD04_RS16570 IPR017459 Glycosyl transferase family 3, N-terminal domain RD04_RS16570 IPR000312 Glycosyl transferase, family 3 RD04_RS16575 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain RD04_RS16575 IPR017926 Glutamine amidotransferase RD04_RS16575 IPR029062 Class I glutamine amidotransferase-like RD04_RS16580 IPR005801 ADC synthase RD04_RS16580 IPR005256 Anthranilate synthase component I, PabB-like RD04_RS16580 IPR006805 Anthranilate synthase component I, N-terminal RD04_RS16580 IPR019999 Anthranilate synthase component I-like RD04_RS16580 IPR015890 Chorismate-utilising enzyme, C-terminal RD04_RS16585 IPR037512 Phosphoglycolate phosphatase, prokaryotic RD04_RS16585 IPR023214 HAD superfamily RD04_RS16585 IPR041492 Haloacid dehalogenase-like hydrolase RD04_RS16585 IPR006439 HAD hydrolase, subfamily IA RD04_RS16585 IPR036412 HAD-like superfamily RD04_RS16585 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RD04_RS16585 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic RD04_RS16590 IPR013785 Aldolase-type TIM barrel RD04_RS16590 IPR026019 Ribulose-phosphate 3-epimerase RD04_RS16590 IPR000056 Ribulose-phosphate 3-epimerase-like RD04_RS16590 IPR011060 Ribulose-phosphate binding barrel RD04_RS16595 IPR036767 ApaG domain superfamily RD04_RS16595 IPR023065 Uncharacterised protein family ApaG RD04_RS16595 IPR007474 ApaG domain RD04_RS16600 IPR005300 Lytic transglycosylase MltA, domain B RD04_RS16600 IPR036908 RlpA-like domain superfamily RD04_RS16600 IPR034654 MltA, 3D domain RD04_RS16600 IPR026044 Membrane-bound lytic murein transglycosylase A RD04_RS16600 IPR010611 3D domain RD04_RS16605 IPR002938 FAD-binding domain RD04_RS16605 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 RD04_RS16605 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site RD04_RS16605 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS16610 IPR033954 Disulphide bond isomerase, DsbC/G RD04_RS16610 IPR036249 Thioredoxin-like superfamily RD04_RS16610 IPR012336 Thioredoxin-like fold RD04_RS16610 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal RD04_RS16610 IPR017937 Thioredoxin, conserved site RD04_RS16615 IPR002912 ACT domain RD04_RS16615 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RD04_RS16615 IPR029009 Allosteric substrate binding domain superfamily RD04_RS16615 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD04_RS16615 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RD04_RS16615 IPR006236 D-3-phosphoglycerate dehydrogenase RD04_RS16615 IPR036291 NAD(P)-binding domain superfamily RD04_RS16615 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain RD04_RS16625 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase RD04_RS16625 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RD04_RS16625 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS16635 IPR036249 Thioredoxin-like superfamily RD04_RS16635 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site RD04_RS16635 IPR012336 Thioredoxin-like fold RD04_RS16635 IPR002109 Glutaredoxin RD04_RS16635 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS16635 IPR012081 Alkyl hydroperoxide reductase subunit F RD04_RS16635 IPR023753 FAD/NAD(P)-binding domain RD04_RS16640 IPR009003 Peptidase S1, PA clan RD04_RS16640 IPR001940 Peptidase S1C RD04_RS16640 IPR036034 PDZ superfamily RD04_RS16640 IPR041489 PDZ domain 6 RD04_RS16640 IPR001478 PDZ domain RD04_RS16640 IPR011782 Peptidase S1C, Do RD04_RS16645 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS16645 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS16645 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS16645 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS16670 IPR023011 ATP synthase, F0 complex, subunit A, active site RD04_RS16670 IPR035908 ATP synthase, F0 complex, subunit A superfamily RD04_RS16670 IPR000568 ATP synthase, F0 complex, subunit A RD04_RS16675 IPR035921 F/V-ATP synthase subunit C superfamily RD04_RS16675 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast RD04_RS16675 IPR000454 ATP synthase, F0 complex, subunit C RD04_RS16675 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site RD04_RS16675 IPR038662 F1F0 ATP synthase subunit C superfamily RD04_RS16675 IPR002379 V-ATPase proteolipid subunit C-like domain RD04_RS16680 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily RD04_RS16680 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast RD04_RS16680 IPR005864 ATP synthase, F0 complex, subunit b, bacterial RD04_RS16685 IPR000711 ATPase, OSCP/delta subunit RD04_RS16685 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily RD04_RS16690 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RD04_RS16690 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16690 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RD04_RS16690 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily RD04_RS16690 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain RD04_RS16690 IPR005294 ATP synthase, F1 complex, alpha subunit RD04_RS16690 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain RD04_RS16690 IPR000793 ATP synthase, alpha subunit, C-terminal RD04_RS16690 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily RD04_RS16690 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily RD04_RS16695 IPR000131 ATP synthase, F1 complex, gamma subunit RD04_RS16695 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site RD04_RS16695 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily RD04_RS16700 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily RD04_RS16700 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RD04_RS16700 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal RD04_RS16700 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16700 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain RD04_RS16700 IPR005722 ATP synthase, F1 complex, beta subunit RD04_RS16700 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RD04_RS16700 IPR003593 AAA+ ATPase domain RD04_RS16705 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal RD04_RS16705 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal RD04_RS16705 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit RD04_RS16705 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily RD04_RS16715 IPR000257 Uroporphyrinogen decarboxylase (URO-D) RD04_RS16715 IPR006361 Uroporphyrinogen decarboxylase HemE RD04_RS16715 IPR038071 UROD/MetE-like superfamily RD04_RS16720 IPR001650 Helicase, C-terminal RD04_RS16720 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain RD04_RS16720 IPR041222 Primosomal protein N', 3' DNA-binding domain RD04_RS16720 IPR005259 Primosomal protein N' RD04_RS16720 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16720 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD04_RS16720 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily RD04_RS16720 IPR011545 DEAD/DEAH box helicase domain RD04_RS16720 IPR041236 Primosomal protein N, C-terminal domain RD04_RS16725 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16725 IPR034739 UvrD/AddA helicase, N-terminal RD04_RS16725 IPR014017 UvrD-like DNA helicase, C-terminal RD04_RS16725 IPR000212 DNA helicase, UvrD/REP type RD04_RS16725 IPR005752 ATP-dependent DNA helicase Rep RD04_RS16725 IPR013986 DExx box DNA helicase domain superfamily RD04_RS16725 IPR014016 UvrD-like helicase, ATP-binding domain RD04_RS16735 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site RD04_RS16735 IPR036264 Bacterial exopeptidase dimerisation domain RD04_RS16735 IPR010162 Peptidase M20B, peptidase T-like RD04_RS16735 IPR011650 Peptidase M20, dimerisation domain RD04_RS16735 IPR008007 Peptidase M42 RD04_RS16735 IPR002933 Peptidase M20 RD04_RS16745 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS16745 IPR003593 AAA+ ATPase domain RD04_RS16745 IPR017871 ABC transporter, conserved site RD04_RS16745 IPR003439 ABC transporter-like RD04_RS16745 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16750 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS16750 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD04_RS16750 IPR035906 MetI-like superfamily RD04_RS16755 IPR014156 Nickel ABC transporter, permease subunit NikB RD04_RS16755 IPR035906 MetI-like superfamily RD04_RS16755 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS16775 IPR029056 Ribokinase-like RD04_RS16775 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase RD04_RS16775 IPR017953 Carbohydrate kinase, predicted, conserved site RD04_RS16780 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS16780 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS16780 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS16785 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS16785 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS16785 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS16785 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS16800 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS16800 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS16800 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS16800 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS16800 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS16800 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS16800 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS16805 IPR003673 CoA-transferase family III RD04_RS16805 IPR023606 CoA-transferase family III domain superfamily RD04_RS16810 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS16810 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site RD04_RS16810 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RD04_RS16810 IPR041040 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RD04_RS16810 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC RD04_RS16810 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RD04_RS16810 IPR036291 NAD(P)-binding domain superfamily RD04_RS16825 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily RD04_RS16825 IPR009056 Cytochrome c-like domain RD04_RS16825 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding RD04_RS16825 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD04_RS16825 IPR036909 Cytochrome c-like domain superfamily RD04_RS16825 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RD04_RS16830 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily RD04_RS16830 IPR003755 HPr(Ser) kinase/phosphorylase RD04_RS16830 IPR011104 HPr kinase/phosphorylase, C-terminal RD04_RS16830 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal RD04_RS16835 IPR016152 Phosphotransferase/anion transporter RD04_RS16835 IPR002178 PTS EIIA type-2 domain RD04_RS16835 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN RD04_RS16840 IPR036567 Ribosome hibernation promotion factor-like RD04_RS16840 IPR003489 Ribosome hibernation promoting factor/RaiA RD04_RS16845 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS16845 IPR003439 ABC transporter-like RD04_RS16845 IPR030921 LPS export ABC transporter, ATP-binding protein LptB RD04_RS16845 IPR017871 ABC transporter, conserved site RD04_RS16845 IPR003593 AAA+ ATPase domain RD04_RS16860 IPR023214 HAD superfamily RD04_RS16860 IPR036412 HAD-like superfamily RD04_RS16860 IPR010023 KdsC family RD04_RS16865 IPR000644 CBS domain RD04_RS16865 IPR001347 Sugar isomerase (SIS) RD04_RS16865 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type RD04_RS16865 IPR035474 KpsF-like, SIS domain RD04_RS16870 IPR001509 NAD-dependent epimerase/dehydratase RD04_RS16870 IPR011761 ATP-grasp fold RD04_RS16870 IPR011054 Rudiment single hybrid motif RD04_RS16870 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase RD04_RS16870 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RD04_RS16870 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS16870 IPR016185 Pre-ATP-grasp domain superfamily RD04_RS16875 IPR012910 TonB-dependent receptor, plug domain RD04_RS16875 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS16875 IPR039423 TonB-dependent receptor-like RD04_RS16875 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS16875 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS16875 IPR010105 TonB-dependent siderophore receptor RD04_RS16885 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal RD04_RS16885 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS16885 IPR027424 Glucose Oxidase, domain 2 RD04_RS16885 IPR012132 Glucose-methanol-choline oxidoreductase RD04_RS16885 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal RD04_RS16885 IPR011533 Oxygen-dependent choline dehydrogenase RD04_RS16905 IPR029351 GAD domain RD04_RS16905 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb RD04_RS16905 IPR004524 Aspartate-tRNA ligase, type 1 RD04_RS16905 IPR006195 Aminoacyl-tRNA synthetase, class II RD04_RS16905 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) RD04_RS16905 IPR004115 GAD-like domain superfamily RD04_RS16905 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type RD04_RS16905 IPR012340 Nucleic acid-binding, OB-fold RD04_RS16910 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RD04_RS16910 IPR005135 Endonuclease/exonuclease/phosphatase RD04_RS16915 IPR025202 Phospholipase D-like domain RD04_RS16915 IPR030872 Cardiolipin synthase B RD04_RS16915 IPR001736 Phospholipase D/Transphosphatidylase RD04_RS16940 IPR028082 Periplasmic binding protein-like I RD04_RS16940 IPR028081 Leucine-binding protein domain RD04_RS16940 IPR000709 Leu/Ile/Val-binding protein RD04_RS16945 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit RD04_RS16945 IPR020556 Amidase, conserved site RD04_RS16945 IPR036928 Amidase signature (AS) superfamily RD04_RS16945 IPR000120 Amidase RD04_RS16945 IPR023631 Amidase signature domain RD04_RS16950 IPR014710 RmlC-like jelly roll fold RD04_RS16950 IPR011051 RmlC-like cupin domain superfamily RD04_RS16950 IPR010300 Cysteine dioxygenase type I RD04_RS16955 IPR029016 GAF-like domain superfamily RD04_RS16955 IPR014757 Transcription regulator IclR, C-terminal RD04_RS16955 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS16955 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS16955 IPR005471 Transcription regulator IclR, N-terminal RD04_RS16970 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RD04_RS16970 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site RD04_RS16970 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RD04_RS16970 IPR036291 NAD(P)-binding domain superfamily RD04_RS16970 IPR012799 Fatty oxidation complex, alpha subunit FadB RD04_RS16970 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS16970 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS16970 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS16975 IPR007939 Copper resistance B precursor RD04_RS17000 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS17000 IPR005337 RapZ-like family RD04_RS17005 IPR007730 Sporulation-like domain RD04_RS17005 IPR036908 RlpA-like domain superfamily RD04_RS17005 IPR012997 Rare lipoprotein A RD04_RS17005 IPR036680 Sporulation-like domain superfamily RD04_RS17005 IPR009009 RlpA-like protein, double-psi beta-barrel domain RD04_RS17005 IPR034718 Endolytic peptidoglycan transglycosylase RlpA RD04_RS17025 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RD04_RS17025 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD04_RS17025 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding RD04_RS17025 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily RD04_RS17030 IPR036884 [2Fe-2S]-binding domain superfamily RD04_RS17030 IPR002888 [2Fe-2S]-binding RD04_RS17030 IPR012675 Beta-grasp domain superfamily RD04_RS17030 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RD04_RS17030 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS17030 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS17035 IPR005107 CO dehydrogenase flavoprotein, C-terminal RD04_RS17035 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RD04_RS17035 IPR016166 FAD-binding domain, PCMH-type RD04_RS17035 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS17035 IPR016167 FAD-binding, type PCMH, subdomain 1 RD04_RS17035 IPR016169 FAD-binding, type PCMH, subdomain 2 RD04_RS17035 IPR002346 Molybdopterin dehydrogenase, FAD-binding RD04_RS17040 IPR015168 SsuA/THI5-like RD04_RS17045 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17045 IPR005064 Bordetella uptake gene RD04_RS17050 IPR036551 Flavin prenyltransferase-like RD04_RS17050 IPR004507 Flavin prenyltransferase UbiX-like RD04_RS17050 IPR003382 Flavoprotein RD04_RS17055 IPR004480 Monothiol glutaredoxin-related RD04_RS17055 IPR002109 Glutaredoxin RD04_RS17055 IPR036249 Thioredoxin-like superfamily RD04_RS17055 IPR014434 Monothiol glutaredoxin RD04_RS17055 IPR033658 Glutaredoxin, PICOT-like RD04_RS17060 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RD04_RS17060 IPR004556 Methyltransferase HemK-like RD04_RS17060 IPR040758 Release factor glutamine methyltransferase, N-terminal domain RD04_RS17060 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific RD04_RS17060 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS17060 IPR007848 Methyltransferase small domain RD04_RS17065 IPR000352 Peptide chain release factor class I RD04_RS17065 IPR004373 Peptide chain release factor 1 RD04_RS17065 IPR005139 Peptide chain release factor RD04_RS17070 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily RD04_RS17070 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily RD04_RS17070 IPR036291 NAD(P)-binding domain superfamily RD04_RS17070 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal RD04_RS17070 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain RD04_RS17070 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase RD04_RS17070 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RD04_RS17070 IPR018214 Glutamyl-tRNA reductase, conserved site RD04_RS17085 IPR009010 Aspartate decarboxylase-like domain superfamily RD04_RS17085 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site RD04_RS17085 IPR006656 Molybdopterin oxidoreductase RD04_RS17085 IPR006657 Molybdopterin dinucleotide-binding domain RD04_RS17085 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase RD04_RS17100 IPR016102 Succinyl-CoA synthetase-like RD04_RS17100 IPR011761 ATP-grasp fold RD04_RS17100 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS17100 IPR003781 CoA-binding RD04_RS17100 IPR000182 GNAT domain RD04_RS17100 IPR016181 Acyl-CoA N-acyltransferase RD04_RS17100 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RD04_RS17100 IPR036291 NAD(P)-binding domain superfamily RD04_RS17105 IPR005064 Bordetella uptake gene RD04_RS17105 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17110 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS17110 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS17110 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS17110 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS17110 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS17110 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS17110 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RD04_RS17115 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RD04_RS17115 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS17115 IPR036291 NAD(P)-binding domain superfamily RD04_RS17115 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RD04_RS17115 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS17115 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS17115 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site RD04_RS17115 IPR012802 Fatty oxidation complex, alpha subunit FadJ RD04_RS17120 IPR020613 Thiolase, conserved site RD04_RS17120 IPR020616 Thiolase, N-terminal RD04_RS17120 IPR002155 Thiolase RD04_RS17120 IPR016039 Thiolase-like RD04_RS17120 IPR020615 Thiolase, acyl-enzyme intermediate active site RD04_RS17120 IPR020610 Thiolase, active site RD04_RS17120 IPR020617 Thiolase, C-terminal RD04_RS17125 IPR000485 AsnC-type HTH domain RD04_RS17125 IPR011008 Dimeric alpha-beta barrel RD04_RS17125 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD04_RS17125 IPR019888 Transcription regulator AsnC-type RD04_RS17125 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17125 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17130 IPR035466 GlmS/AgaS, SIS domain 1 RD04_RS17130 IPR001347 Sugar isomerase (SIS) RD04_RS17130 IPR029055 Nucleophile aminohydrolases, N-terminal RD04_RS17130 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising RD04_RS17130 IPR035490 GlmS/FrlB, SIS domain 2 RD04_RS17130 IPR017932 Glutamine amidotransferase type 2 domain RD04_RS17135 IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase RD04_RS17135 IPR036291 NAD(P)-binding domain superfamily RD04_RS17140 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17140 IPR005064 Bordetella uptake gene RD04_RS17150 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS17150 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS17150 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS17150 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS17155 IPR011761 ATP-grasp fold RD04_RS17155 IPR003781 CoA-binding RD04_RS17155 IPR016102 Succinyl-CoA synthetase-like RD04_RS17155 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RD04_RS17155 IPR036291 NAD(P)-binding domain superfamily RD04_RS17155 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS17160 IPR005119 LysR, substrate-binding RD04_RS17160 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17160 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17160 IPR000847 Transcription regulator HTH, LysR RD04_RS17165 IPR013149 Alcohol dehydrogenase, C-terminal RD04_RS17165 IPR014188 Acrylyl-CoA reductase AcuI RD04_RS17165 IPR011032 GroES-like superfamily RD04_RS17165 IPR036291 NAD(P)-binding domain superfamily RD04_RS17165 IPR020843 Polyketide synthase, enoylreductase domain RD04_RS17165 IPR013154 Alcohol dehydrogenase, N-terminal RD04_RS17170 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS17175 IPR035959 RutC-like superfamily RD04_RS17175 IPR006175 YjgF/YER057c/UK114 family RD04_RS17175 IPR019897 RidA, conserved site RD04_RS17175 IPR006056 RidA family RD04_RS17185 IPR010169 Acetylornithine deacetylase ArgE RD04_RS17185 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site RD04_RS17185 IPR036264 Bacterial exopeptidase dimerisation domain RD04_RS17185 IPR002933 Peptidase M20 RD04_RS17185 IPR011650 Peptidase M20, dimerisation domain RD04_RS17190 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17190 IPR005064 Bordetella uptake gene RD04_RS17195 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS17195 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS17195 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS17195 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS17195 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS17195 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS17200 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS17200 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS17200 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS17200 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS17200 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS17200 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS17205 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal RD04_RS17205 IPR016164 FAD-linked oxidase-like, C-terminal RD04_RS17205 IPR016169 FAD-binding, type PCMH, subdomain 2 RD04_RS17205 IPR006094 FAD linked oxidase, N-terminal RD04_RS17205 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 RD04_RS17205 IPR012256 D-lactate dehydrogenase RD04_RS17205 IPR016166 FAD-binding domain, PCMH-type RD04_RS17205 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS17205 IPR016167 FAD-binding, type PCMH, subdomain 1 RD04_RS17205 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 RD04_RS17210 IPR005119 LysR, substrate-binding RD04_RS17210 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17210 IPR037405 HTH-type transcriptional regulator GbpR, PBP2 domain RD04_RS17210 IPR000847 Transcription regulator HTH, LysR RD04_RS17210 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17215 IPR005064 Bordetella uptake gene RD04_RS17215 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17240 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA RD04_RS17240 IPR020625 Schiff base-forming aldolase, active site RD04_RS17240 IPR002220 DapA-like RD04_RS17240 IPR013785 Aldolase-type TIM barrel RD04_RS17245 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17245 IPR005119 LysR, substrate-binding RD04_RS17245 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17245 IPR037415 Octopine catabolism/uptake operon regulatory protein OccR, PBP2 domain RD04_RS17245 IPR000847 Transcription regulator HTH, LysR RD04_RS17250 IPR023606 CoA-transferase family III domain superfamily RD04_RS17250 IPR003673 CoA-transferase family III RD04_RS17255 IPR005064 Bordetella uptake gene RD04_RS17255 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17260 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS17260 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS17260 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS17260 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS17260 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS17260 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS17260 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS17265 IPR002539 MaoC-like dehydratase domain RD04_RS17265 IPR003965 Fatty acid synthase RD04_RS17265 IPR029069 HotDog domain superfamily RD04_RS17280 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal RD04_RS17280 IPR016039 Thiolase-like RD04_RS17280 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 RD04_RS17280 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD04_RS17285 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS17285 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB RD04_RS17285 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS17285 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS17290 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS17290 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS17290 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS17290 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS17290 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS17290 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS17290 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS17295 IPR005064 Bordetella uptake gene RD04_RS17295 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17300 IPR003781 CoA-binding RD04_RS17300 IPR036291 NAD(P)-binding domain superfamily RD04_RS17300 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RD04_RS17300 IPR011761 ATP-grasp fold RD04_RS17300 IPR016102 Succinyl-CoA synthetase-like RD04_RS17300 IPR013815 ATP-grasp fold, subdomain 1 RD04_RS17310 IPR001017 Dehydrogenase, E1 component RD04_RS17310 IPR029061 Thiamin diphosphate-binding fold RD04_RS17315 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II RD04_RS17315 IPR005475 Transketolase-like, pyrimidine-binding domain RD04_RS17315 IPR029061 Thiamin diphosphate-binding fold RD04_RS17315 IPR033248 Transketolase, C-terminal domain RD04_RS17320 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS17320 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS17320 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS17320 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS17325 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain RD04_RS17325 IPR011053 Single hybrid motif RD04_RS17325 IPR004167 Peripheral subunit-binding domain RD04_RS17325 IPR036625 E3-binding domain superfamily RD04_RS17325 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily RD04_RS17325 IPR000089 Biotin/lipoyl attachment RD04_RS17325 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RD04_RS17325 IPR006255 Dihydrolipoamide succinyltransferase RD04_RS17330 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS17330 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS17330 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS17330 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS17330 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS17330 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS17335 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS17335 IPR020845 AMP-binding, conserved site RD04_RS17335 IPR000873 AMP-dependent synthetase/ligase RD04_RS17335 IPR042099 AMP-dependent synthetase-like superfamily RD04_RS17345 IPR028082 Periplasmic binding protein-like I RD04_RS17345 IPR028081 Leucine-binding protein domain RD04_RS17345 IPR000709 Leu/Ile/Val-binding protein RD04_RS17350 IPR001851 ABC transporter, permease RD04_RS17355 IPR003439 ABC transporter-like RD04_RS17355 IPR003593 AAA+ ATPase domain RD04_RS17355 IPR017871 ABC transporter, conserved site RD04_RS17355 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD04_RS17355 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS17360 IPR003593 AAA+ ATPase domain RD04_RS17360 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS17360 IPR003439 ABC transporter-like RD04_RS17360 IPR017871 ABC transporter, conserved site RD04_RS17360 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS17365 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site RD04_RS17365 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS17365 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily RD04_RS17365 IPR006258 Dihydrolipoamide dehydrogenase RD04_RS17365 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I RD04_RS17365 IPR023753 FAD/NAD(P)-binding domain RD04_RS17365 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD04_RS17380 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17380 IPR005064 Bordetella uptake gene RD04_RS17395 IPR005064 Bordetella uptake gene RD04_RS17395 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17405 IPR035985 Ubiquitin-activating enzyme RD04_RS17405 IPR000594 THIF-type NAD/FAD binding fold RD04_RS17405 IPR012730 Molybdopterin synthase sulfurylase MoeB RD04_RS17410 IPR005151 Tail specific protease RD04_RS17410 IPR004447 C-terminal-processing peptidase S41A RD04_RS17410 IPR036034 PDZ superfamily RD04_RS17410 IPR001478 PDZ domain RD04_RS17410 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS17415 IPR016047 Peptidase M23 RD04_RS17415 IPR011055 Duplicated hybrid motif RD04_RS17420 IPR013078 Histidine phosphatase superfamily, clade-1 RD04_RS17420 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site RD04_RS17420 IPR029033 Histidine phosphatase superfamily RD04_RS17420 IPR005952 Phosphoglycerate mutase 1 RD04_RS17425 IPR020936 Uncharacterised protein family UPF0176 RD04_RS17425 IPR022111 Rhodanase, C-terminal RD04_RS17425 IPR036873 Rhodanese-like domain superfamily RD04_RS17425 IPR001763 Rhodanese-like domain RD04_RS17425 IPR040503 UPF0176, acylphosphatase-like domain RD04_RS17430 IPR011767 Glutaredoxin active site RD04_RS17430 IPR002109 Glutaredoxin RD04_RS17430 IPR011900 Glutaredoxin, GrxC RD04_RS17430 IPR014025 Glutaredoxin subgroup RD04_RS17430 IPR036249 Thioredoxin-like superfamily RD04_RS17435 IPR003708 Bacterial protein export chaperone SecB RD04_RS17435 IPR035958 SecB-like superfamily RD04_RS17440 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal RD04_RS17440 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal RD04_RS17440 IPR036291 NAD(P)-binding domain superfamily RD04_RS17440 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent RD04_RS17440 IPR013328 6-phosphogluconate dehydrogenase, domain 2 RD04_RS17440 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS17445 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17445 IPR005064 Bordetella uptake gene RD04_RS17450 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD04_RS17450 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase RD04_RS17450 IPR001537 tRNA/rRNA methyltransferase, SpoU type RD04_RS17450 IPR029028 Alpha/beta knot methyltransferases RD04_RS17460 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC RD04_RS17460 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS17460 IPR013216 Methyltransferase type 11 RD04_RS17465 IPR011793 Putative glutamate--cysteine ligase YbdK RD04_RS17465 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain RD04_RS17465 IPR006336 Glutamate--cysteine ligase, GCS2 RD04_RS17470 IPR004681 TRAP transporter large membrane protein DctM RD04_RS17470 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD04_RS17480 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS17480 IPR035906 MetI-like superfamily RD04_RS17485 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS17485 IPR003593 AAA+ ATPase domain RD04_RS17485 IPR003439 ABC transporter-like RD04_RS17485 IPR017871 ABC transporter, conserved site RD04_RS17485 IPR015859 ABC transporter, taurine import, TauD RD04_RS17495 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS17495 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS17495 IPR002888 [2Fe-2S]-binding RD04_RS17495 IPR036884 [2Fe-2S]-binding domain superfamily RD04_RS17495 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RD04_RS17495 IPR012675 Beta-grasp domain superfamily RD04_RS17500 IPR005107 CO dehydrogenase flavoprotein, C-terminal RD04_RS17500 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RD04_RS17500 IPR002346 Molybdopterin dehydrogenase, FAD-binding RD04_RS17500 IPR016169 FAD-binding, type PCMH, subdomain 2 RD04_RS17500 IPR016167 FAD-binding, type PCMH, subdomain 1 RD04_RS17500 IPR036318 FAD-binding, type PCMH-like superfamily RD04_RS17500 IPR016166 FAD-binding domain, PCMH-type RD04_RS17505 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding RD04_RS17505 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily RD04_RS17505 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD04_RS17505 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RD04_RS17510 IPR038404 TRAP transporter solute receptor DctP superfamily RD04_RS17510 IPR018389 TRAP transporter solute receptor DctP/TeaA RD04_RS17510 IPR041722 Alpha-keto acid binding periplasmic protein RD04_RS17510 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS17510 IPR026289 Solute binding protein, TakP-like RD04_RS17515 IPR017941 Rieske [2Fe-2S] iron-sulphur domain RD04_RS17515 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily RD04_RS17520 IPR028202 Reductase, C-terminal RD04_RS17520 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily RD04_RS17520 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS17520 IPR023753 FAD/NAD(P)-binding domain RD04_RS17525 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit RD04_RS17525 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain RD04_RS17525 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site RD04_RS17525 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily RD04_RS17525 IPR017941 Rieske [2Fe-2S] iron-sulphur domain RD04_RS17535 IPR036380 Isochorismatase-like superfamily RD04_RS17535 IPR000868 Isochorismatase-like RD04_RS17545 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS17545 IPR029058 Alpha/Beta hydrolase fold RD04_RS17550 IPR028615 Maleate isomerase RD04_RS17550 IPR026286 Maleate isomerase/Arylmalonate decarboxylase RD04_RS17560 IPR017615 Xanthine dehydrogenase, accessory protein PucB RD04_RS17560 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS17560 IPR025877 MobA-like NTP transferase RD04_RS17570 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17570 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17570 IPR023187 Transcriptional regulator MarR-type, conserved site RD04_RS17570 IPR000835 MarR-type HTH domain RD04_RS17575 IPR004772 TrkH potassium transport family RD04_RS17575 IPR003445 Cation transporter RD04_RS17580 IPR036291 NAD(P)-binding domain superfamily RD04_RS17580 IPR006036 Potassium uptake protein TrkA RD04_RS17580 IPR006037 Regulator of K+ conductance, C-terminal RD04_RS17580 IPR003148 Regulator of K+ conductance, N-terminal RD04_RS17580 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily RD04_RS17585 IPR003593 AAA+ ATPase domain RD04_RS17585 IPR011006 CheY-like superfamily RD04_RS17585 IPR009057 Homeobox-like domain superfamily RD04_RS17585 IPR002197 DNA binding HTH domain, Fis-type RD04_RS17585 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS17585 IPR001789 Signal transduction response regulator, receiver domain RD04_RS17585 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RD04_RS17585 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RD04_RS17585 IPR025944 Sigma-54 interaction domain, conserved site RD04_RS17585 IPR002078 RNA polymerase sigma factor 54 interaction domain RD04_RS17590 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS17590 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS17590 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS17590 IPR013767 PAS fold RD04_RS17590 IPR005467 Histidine kinase domain RD04_RS17590 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator RD04_RS17590 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS17590 IPR003660 HAMP domain RD04_RS17590 IPR000014 PAS domain RD04_RS17590 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS17590 IPR035965 PAS domain superfamily RD04_RS17600 IPR035926 NusB-like superfamily RD04_RS17600 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type RD04_RS17600 IPR023267 RNA (C5-cytosine) methyltransferase RD04_RS17600 IPR004573 rRNA small subunit methyltransferase B RD04_RS17600 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS17600 IPR006027 NusB/RsmB/TIM44 RD04_RS17600 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site RD04_RS17610 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding RD04_RS17610 IPR020626 L-aspartate dehydrogenase, prokaryotic RD04_RS17610 IPR011182 L-aspartate dehydrogenase RD04_RS17610 IPR036291 NAD(P)-binding domain superfamily RD04_RS17610 IPR002811 Aspartate dehydrogenase RD04_RS17625 IPR001123 Amino acid exporter protein, LeuE-type RD04_RS17625 IPR004777 L-lysine exporter/arginine exporter RD04_RS17630 IPR017685 HTH-type transcriptional regulator ArgP RD04_RS17630 IPR005119 LysR, substrate-binding RD04_RS17630 IPR000847 Transcription regulator HTH, LysR RD04_RS17630 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17630 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17640 IPR005064 Bordetella uptake gene RD04_RS17640 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17645 IPR011078 Pyridoxal phosphate homeostasis protein RD04_RS17645 IPR029066 PLP-binding barrel RD04_RS17645 IPR001608 Alanine racemase, N-terminal RD04_RS17650 IPR004839 Aminotransferase, class I/classII RD04_RS17650 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS17650 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS17650 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS17655 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter RD04_RS17655 IPR018313 Solute-binding protein family 3, conserved site RD04_RS17655 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS17665 IPR013785 Aldolase-type TIM barrel RD04_RS17665 IPR000891 Pyruvate carboxyltransferase RD04_RS17665 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site RD04_RS17670 IPR003488 DNA recombination-mediator protein A RD04_RS17670 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17670 IPR041614 DprA, winged helix domain RD04_RS17675 IPR019888 Transcription regulator AsnC-type RD04_RS17675 IPR000485 AsnC-type HTH domain RD04_RS17675 IPR011008 Dimeric alpha-beta barrel RD04_RS17675 IPR011991 ArsR-like helix-turn-helix domain RD04_RS17675 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD04_RS17675 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17675 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17675 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD04_RS17680 IPR010111 Kynureninase RD04_RS17680 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS17680 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS17680 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS17680 IPR000192 Aminotransferase class V domain RD04_RS17685 IPR023635 Peptide deformylase RD04_RS17685 IPR036821 Peptide deformylase superfamily RD04_RS17695 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain RD04_RS17695 IPR001555 Phosphoribosylglycinamide formyltransferase, active site RD04_RS17695 IPR011034 Formyl transferase-like, C-terminal domain superfamily RD04_RS17695 IPR036477 Formyl transferase, N-terminal domain superfamily RD04_RS17695 IPR002376 Formyl transferase, N-terminal RD04_RS17695 IPR005794 Methionyl-tRNA formyltransferase RD04_RS17695 IPR005793 Formyl transferase, C-terminal RD04_RS17695 IPR037022 Formyl transferase, C-terminal domain superfamily RD04_RS17705 IPR023214 HAD superfamily RD04_RS17705 IPR036412 HAD-like superfamily RD04_RS17705 IPR006439 HAD hydrolase, subfamily IA RD04_RS17705 IPR041492 Haloacid dehalogenase-like hydrolase RD04_RS17705 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RD04_RS17715 IPR031100 LOG family RD04_RS17715 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RD04_RS17725 IPR005840 Ribosomal protein S12 methylthiotransferase RimO RD04_RS17725 IPR006638 Elp3/MiaB/NifB RD04_RS17725 IPR038135 Methylthiotransferase, N-terminal domain superfamily RD04_RS17725 IPR002792 TRAM domain RD04_RS17725 IPR023404 Radical SAM, alpha/beta horseshoe RD04_RS17725 IPR005839 Methylthiotransferase RD04_RS17725 IPR013848 Methylthiotransferase, N-terminal RD04_RS17725 IPR041582 RimO, TRAM domain RD04_RS17725 IPR020612 Methylthiotransferase, conserved site RD04_RS17725 IPR007197 Radical SAM RD04_RS17730 IPR014347 Tautomerase/MIF superfamily RD04_RS17730 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type RD04_RS17730 IPR004370 4-oxalocrotonate tautomerase RD04_RS17735 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS17735 IPR006076 FAD dependent oxidoreductase RD04_RS17740 IPR005064 Bordetella uptake gene RD04_RS17740 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17745 IPR011711 GntR, C-terminal RD04_RS17745 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS17745 IPR000524 Transcription regulator HTH, GntR RD04_RS17745 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17745 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17755 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS17755 IPR005814 Aminotransferase class-III RD04_RS17755 IPR010164 Ornithine aminotransferase RD04_RS17755 IPR034757 Ornithine aminotransferase, bacterial type RD04_RS17755 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS17755 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS17760 IPR020855 Ureohydrolase, manganese-binding site RD04_RS17760 IPR014033 Arginase RD04_RS17760 IPR006035 Ureohydrolase RD04_RS17760 IPR023696 Ureohydrolase domain superfamily RD04_RS17770 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17770 IPR005064 Bordetella uptake gene RD04_RS17775 IPR029032 AhpD-like RD04_RS17775 IPR003779 Carboxymuconolactone decarboxylase-like RD04_RS17775 IPR004675 Alkylhydroperoxidase AhpD core RD04_RS17780 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS17780 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS17780 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS17785 IPR029016 GAF-like domain superfamily RD04_RS17785 IPR014757 Transcription regulator IclR, C-terminal RD04_RS17785 IPR005471 Transcription regulator IclR, N-terminal RD04_RS17785 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17785 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17790 IPR000873 AMP-dependent synthetase/ligase RD04_RS17790 IPR020845 AMP-binding, conserved site RD04_RS17790 IPR025110 AMP-binding enzyme, C-terminal domain RD04_RS17795 IPR042100 Bordetella uptake gene, domain 1 RD04_RS17795 IPR005064 Bordetella uptake gene RD04_RS17805 IPR013425 Autotransporter-associated beta strand repeat RD04_RS17805 IPR006315 Outer membrane autotransporter barrel RD04_RS17805 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS17805 IPR011050 Pectin lyase fold/virulence factor RD04_RS17805 IPR005546 Autotransporter beta-domain RD04_RS17805 IPR005546 Autotransporter beta-domain RD04_RS17805 IPR036709 Autotransporter beta-domain superfamily RD04_RS17805 IPR013425 Autotransporter-associated beta strand repeat RD04_RS17805 IPR006315 Outer membrane autotransporter barrel RD04_RS17805 IPR012332 P22 tailspike-like, C-terminal domain superfamily RD04_RS17805 IPR011050 Pectin lyase fold/virulence factor RD04_RS17805 IPR036709 Autotransporter beta-domain superfamily RD04_RS17825 IPR000847 Transcription regulator HTH, LysR RD04_RS17825 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17825 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17825 IPR005119 LysR, substrate-binding RD04_RS17835 IPR001608 Alanine racemase, N-terminal RD04_RS17835 IPR026956 D-serine dehydratase-like domain RD04_RS17835 IPR042208 D-serine dehydratase-like domain superfamily RD04_RS17835 IPR029066 PLP-binding barrel RD04_RS17840 IPR036913 YegP-like superfamily RD04_RS17840 IPR010879 Domain of unknown function DUF1508 RD04_RS17845 IPR010200 HflC RD04_RS17845 IPR001107 Band 7 domain RD04_RS17845 IPR036013 Band 7/SPFH domain superfamily RD04_RS17855 IPR006175 YjgF/YER057c/UK114 family RD04_RS17855 IPR035959 RutC-like superfamily RD04_RS17855 IPR019898 Putative aminoacrylate peracid reductase RutC RD04_RS17900 IPR004590 DNA single-strand annealing protein RecT RD04_RS17900 IPR018330 RecT family RD04_RS17935 IPR002104 Integrase, catalytic domain RD04_RS17935 IPR013762 Integrase-like, catalytic domain superfamily RD04_RS17935 IPR011010 DNA breaking-rejoining enzyme, catalytic core RD04_RS17935 IPR010998 Integrase/recombinase, N-terminal RD04_RS17940 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS17940 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS17940 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS17940 IPR005467 Histidine kinase domain RD04_RS17940 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS17940 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS17960 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS17960 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS17960 IPR000847 Transcription regulator HTH, LysR RD04_RS17960 IPR005119 LysR, substrate-binding RD04_RS17965 IPR023048 NADH-azoreductase, FMN-dependent RD04_RS17965 IPR029039 Flavoprotein-like superfamily RD04_RS17965 IPR003680 Flavodoxin-like fold RD04_RS17975 IPR038210 Membrane insertase YidC, periplasmic domain RD04_RS17975 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 RD04_RS17975 IPR028055 Membrane insertase YidC/Oxa1, C-terminal RD04_RS17975 IPR019998 Membrane insertase YidC RD04_RS17975 IPR028053 Membrane insertase YidC, N-terminal RD04_RS17975 IPR038221 YidC, periplasmic domain superfamily RD04_RS17980 IPR002696 Putative membrane protein insertion efficiency factor RD04_RS17985 IPR000100 Ribonuclease P RD04_RS17985 IPR020539 Ribonuclease P, conserved site RD04_RS17985 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS17985 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS17990 IPR020939 Ribosomal protein L34, conserved site RD04_RS17990 IPR000271 Ribosomal protein L34 RD04_RS17995 IPR018312 Chromosomal replication control, initiator DnaA, conserved site RD04_RS17995 IPR013317 Chromosomal replication initiator protein DnaA RD04_RS17995 IPR010921 Trp repressor/replication initiator RD04_RS17995 IPR024633 DnaA N-terminal domain RD04_RS17995 IPR038454 DnaA, N-terminal domain superfamily RD04_RS17995 IPR013159 Chromosomal replication initiator, DnaA C-terminal RD04_RS17995 IPR020591 Chromosomal replication control, initiator DnaA-like RD04_RS17995 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS17995 IPR001957 Chromosomal replication control, initiator DnaA RD04_RS17995 IPR003593 AAA+ ATPase domain RD04_RS18000 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal RD04_RS18000 IPR022637 DNA polymerase III, beta sliding clamp, central RD04_RS18000 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal RD04_RS18000 IPR001001 DNA polymerase III, beta sliding clamp RD04_RS18005 IPR006171 TOPRIM domain RD04_RS18005 IPR001241 DNA topoisomerase, type IIA RD04_RS18005 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS18005 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS18005 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS18005 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS18005 IPR041423 DNA gyrase subunit B insert domain RD04_RS18005 IPR013760 DNA topoisomerase, type IIA-like domain superfamily RD04_RS18005 IPR034160 DNA gyrase subunit B, TOPRIM domain RD04_RS18005 IPR002288 DNA gyrase B subunit, C-terminal RD04_RS18005 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal RD04_RS18005 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 RD04_RS18005 IPR018522 DNA topoisomerase, type IIA, conserved site RD04_RS18005 IPR011557 DNA gyrase, subunit B RD04_RS18010 IPR014757 Transcription regulator IclR, C-terminal RD04_RS18010 IPR005471 Transcription regulator IclR, N-terminal RD04_RS18010 IPR029016 GAF-like domain superfamily RD04_RS18010 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS18010 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS18015 IPR023631 Amidase signature domain RD04_RS18015 IPR020556 Amidase, conserved site RD04_RS18015 IPR036928 Amidase signature (AS) superfamily RD04_RS18015 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit RD04_RS18015 IPR000120 Amidase RD04_RS18020 IPR042100 Bordetella uptake gene, domain 1 RD04_RS18020 IPR005064 Bordetella uptake gene RD04_RS18030 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent RD04_RS18030 IPR013785 Aldolase-type TIM barrel RD04_RS18030 IPR020920 L-lactate dehydrogenase, bacterial RD04_RS18030 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site RD04_RS18030 IPR000262 FMN-dependent dehydrogenase RD04_RS18030 IPR037396 FMN hydroxy acid dehydrogenase domain RD04_RS18050 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS18050 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS18050 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS18050 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS18050 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS18050 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS18050 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS18055 IPR011789 Cu(I)-responsive transcriptional regulator RD04_RS18055 IPR015358 Transcription regulator MerR, DNA binding RD04_RS18055 IPR000551 MerR-type HTH domain RD04_RS18055 IPR009061 Putative DNA-binding domain superfamily RD04_RS18070 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal RD04_RS18070 IPR006089 Acyl-CoA dehydrogenase, conserved site RD04_RS18070 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain RD04_RS18070 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal RD04_RS18070 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily RD04_RS18070 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal RD04_RS18070 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily RD04_RS18080 IPR020616 Thiolase, N-terminal RD04_RS18080 IPR020615 Thiolase, acyl-enzyme intermediate active site RD04_RS18080 IPR016039 Thiolase-like RD04_RS18080 IPR020617 Thiolase, C-terminal RD04_RS18080 IPR020610 Thiolase, active site RD04_RS18080 IPR020613 Thiolase, conserved site RD04_RS18080 IPR002155 Thiolase RD04_RS18085 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal RD04_RS18085 IPR034733 Acetyl-CoA carboxylase RD04_RS18085 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS18085 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal RD04_RS18090 IPR011053 Single hybrid motif RD04_RS18090 IPR016185 Pre-ATP-grasp domain superfamily RD04_RS18090 IPR011054 Rudiment single hybrid motif RD04_RS18090 IPR001882 Biotin-binding site RD04_RS18090 IPR011761 ATP-grasp fold RD04_RS18090 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain RD04_RS18090 IPR005481 Biotin carboxylase-like, N-terminal domain RD04_RS18090 IPR011764 Biotin carboxylation domain RD04_RS18090 IPR005482 Biotin carboxylase, C-terminal RD04_RS18090 IPR000089 Biotin/lipoyl attachment RD04_RS18100 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS18100 IPR004636 Acetylornithine/Succinylornithine transaminase family RD04_RS18100 IPR005814 Aminotransferase class-III RD04_RS18100 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS18100 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS18105 IPR042100 Bordetella uptake gene, domain 1 RD04_RS18105 IPR005064 Bordetella uptake gene RD04_RS18110 IPR029066 PLP-binding barrel RD04_RS18110 IPR001608 Alanine racemase, N-terminal RD04_RS18110 IPR042208 D-serine dehydratase-like domain superfamily RD04_RS18110 IPR026956 D-serine dehydratase-like domain RD04_RS18115 IPR011852 TRAP transporter solute receptor, TAXI family RD04_RS18125 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS18125 IPR039426 Vitamin B12 transporter BtuB-like RD04_RS18125 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS18125 IPR011276 TonB-dependent haem/haemoglobin receptor RD04_RS18125 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor RD04_RS18125 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS18125 IPR010917 TonB-dependent receptor, conserved site RD04_RS18125 IPR012910 TonB-dependent receptor, plug domain RD04_RS18130 IPR007456 Smg RD04_RS18145 IPR023406 DNA topoisomerase, type IA, active site RD04_RS18145 IPR003601 DNA topoisomerase, type IA, domain 2 RD04_RS18145 IPR013497 DNA topoisomerase, type IA, central RD04_RS18145 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RD04_RS18145 IPR000380 DNA topoisomerase, type IA RD04_RS18145 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RD04_RS18145 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 RD04_RS18145 IPR006171 TOPRIM domain RD04_RS18145 IPR023405 DNA topoisomerase, type IA, core domain RD04_RS18145 IPR003602 DNA topoisomerase, type IA, DNA-binding domain RD04_RS18145 IPR005738 DNA topoisomerase III RD04_RS18145 IPR034144 DNA topoisomerase 3-like, TOPRIM domain RD04_RS18155 IPR017871 ABC transporter, conserved site RD04_RS18155 IPR003593 AAA+ ATPase domain RD04_RS18155 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS18155 IPR015859 ABC transporter, taurine import, TauD RD04_RS18155 IPR003439 ABC transporter-like RD04_RS18160 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS18160 IPR035906 MetI-like superfamily RD04_RS18165 IPR036291 NAD(P)-binding domain superfamily RD04_RS18165 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS18165 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS18170 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS18170 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS18170 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent RD04_RS18170 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RD04_RS18170 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS18170 IPR015590 Aldehyde dehydrogenase domain RD04_RS18175 IPR036291 NAD(P)-binding domain superfamily RD04_RS18175 IPR002347 Short-chain dehydrogenase/reductase SDR RD04_RS18175 IPR020904 Short-chain dehydrogenase/reductase, conserved site RD04_RS18180 IPR012846 Acetolactate synthase, large subunit, biosynthetic RD04_RS18180 IPR039368 Acetolactate synthase large subunit, TPP binding domain RD04_RS18180 IPR029035 DHS-like NAD/FAD-binding domain superfamily RD04_RS18180 IPR029061 Thiamin diphosphate-binding fold RD04_RS18180 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain RD04_RS18180 IPR000399 TPP-binding enzyme, conserved site RD04_RS18180 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding RD04_RS18180 IPR012000 Thiamine pyrophosphate enzyme, central domain RD04_RS18185 IPR011008 Dimeric alpha-beta barrel RD04_RS18185 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS18185 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS18185 IPR019888 Transcription regulator AsnC-type RD04_RS18185 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD04_RS18185 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD04_RS18185 IPR000485 AsnC-type HTH domain RD04_RS18190 IPR021134 Bestrophin/UPF0187 RD04_RS18200 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB RD04_RS18200 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RD04_RS18215 IPR000489 Pterin-binding domain RD04_RS18215 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily RD04_RS18215 IPR004223 Vitamin B12-dependent methionine synthase, activation domain RD04_RS18215 IPR011005 Dihydropteroate synthase-like RD04_RS18215 IPR036594 Methionine synthase domain RD04_RS18215 IPR011822 Cobalamin-dependent methionine synthase RD04_RS18215 IPR033706 Methionine synthase, B12-binding domain RD04_RS18215 IPR036589 Homocysteine-binding domain superfamily RD04_RS18215 IPR003726 Homocysteine-binding domain RD04_RS18215 IPR036724 Cobalamin-binding domain superfamily RD04_RS18215 IPR006158 Cobalamin (vitamin B12)-binding domain RD04_RS18215 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RD04_RS18220 IPR012910 TonB-dependent receptor, plug domain RD04_RS18220 IPR010101 TonB-dependent vitamin B12 transporter BtuB RD04_RS18220 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS18220 IPR039426 Vitamin B12 transporter BtuB-like RD04_RS18220 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS18220 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS18225 IPR002491 ABC transporter periplasmic binding domain RD04_RS18225 IPR023544 ABC transporter, vitamin B12-binding protein RD04_RS18230 IPR033983 Thiazole synthase ThiG RD04_RS18230 IPR013785 Aldolase-type TIM barrel RD04_RS18230 IPR008867 Thiazole synthase RD04_RS18235 IPR029056 Ribokinase-like RD04_RS18235 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase RD04_RS18235 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase RD04_RS18240 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase RD04_RS18240 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS18250 IPR010130 Type I secretion outer membrane protein, TolC RD04_RS18250 IPR003423 Outer membrane efflux protein RD04_RS18255 IPR011914 RfaE bifunctional protein, domain II RD04_RS18255 IPR004821 Cytidyltransferase-like domain RD04_RS18255 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS18265 IPR002549 Transmembrane protein TqsA-like RD04_RS18275 IPR013099 Potassium channel domain RD04_RS18275 IPR036291 NAD(P)-binding domain superfamily RD04_RS18275 IPR003148 Regulator of K+ conductance, N-terminal RD04_RS18285 IPR012340 Nucleic acid-binding, OB-fold RD04_RS18285 IPR006032 Ribosomal protein S12/S23 RD04_RS18285 IPR005679 Ribosomal protein S12, bacterial-type RD04_RS18290 IPR005717 Ribosomal protein S7, bacterial/organellar-type RD04_RS18290 IPR000235 Ribosomal protein S5/S7 RD04_RS18290 IPR036823 Ribosomal protein S7 domain superfamily RD04_RS18290 IPR023798 Ribosomal protein S7 domain RD04_RS18290 IPR020606 Ribosomal protein S7, conserved site RD04_RS18295 IPR000640 Elongation factor EFG, domain V-like RD04_RS18295 IPR004540 Translation elongation factor EFG/EF2 RD04_RS18295 IPR041095 Elongation Factor G, domain II RD04_RS18295 IPR005517 Translation elongation factor EFG/EF2, domain IV RD04_RS18295 IPR035647 EF-G domain III/V-like RD04_RS18295 IPR035649 EFG, domain V RD04_RS18295 IPR004161 Translation elongation factor EFTu-like, domain 2 RD04_RS18295 IPR009022 Elongation factor G, domain III RD04_RS18295 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS18295 IPR031157 Tr-type G domain, conserved site RD04_RS18295 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS18295 IPR000795 Transcription factor, GTP-binding domain RD04_RS18295 IPR005225 Small GTP-binding protein domain RD04_RS18295 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS18295 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS18300 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain RD04_RS18300 IPR004161 Translation elongation factor EFTu-like, domain 2 RD04_RS18300 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle RD04_RS18300 IPR031157 Tr-type G domain, conserved site RD04_RS18300 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS18300 IPR005225 Small GTP-binding protein domain RD04_RS18300 IPR000795 Transcription factor, GTP-binding domain RD04_RS18300 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS18300 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RD04_RS18300 IPR033720 Elongation factor Tu, domain 2 RD04_RS18300 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RD04_RS18305 IPR036838 Ribosomal protein S10 domain superfamily RD04_RS18305 IPR027486 Ribosomal protein S10 domain RD04_RS18305 IPR018268 Ribosomal protein S10, conserved site RD04_RS18305 IPR001848 Ribosomal protein S10 RD04_RS18310 IPR019926 Ribosomal protein L3, conserved site RD04_RS18310 IPR019927 Ribosomal protein L3, bacterial/organelle-type RD04_RS18310 IPR000597 Ribosomal protein L3 RD04_RS18310 IPR009000 Translation protein, beta-barrel domain superfamily RD04_RS18315 IPR023574 Ribosomal protein L4 domain superfamily RD04_RS18315 IPR013005 50S ribosomal protein uL4 RD04_RS18315 IPR002136 Ribosomal protein L4/L1e RD04_RS18320 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RD04_RS18320 IPR012678 Ribosomal protein L23/L15e core domain superfamily RD04_RS18320 IPR013025 Ribosomal protein L25/L23 RD04_RS18325 IPR008991 Translation protein SH3-like domain superfamily RD04_RS18325 IPR014726 Ribosomal protein L2, domain 3 RD04_RS18325 IPR022666 Ribosomal Proteins L2, RNA binding domain RD04_RS18325 IPR022671 Ribosomal protein L2, conserved site RD04_RS18325 IPR022669 Ribosomal protein L2, C-terminal RD04_RS18325 IPR005880 Ribosomal protein L2, bacterial/organellar-type RD04_RS18325 IPR002171 Ribosomal protein L2 RD04_RS18325 IPR014722 Ribosomal protein L2, domain 2 RD04_RS18325 IPR012340 Nucleic acid-binding, OB-fold RD04_RS18330 IPR023575 Ribosomal protein S19, superfamily RD04_RS18330 IPR020934 Ribosomal protein S19 conserved site RD04_RS18330 IPR002222 Ribosomal protein S19/S15 RD04_RS18330 IPR005732 Ribosomal protein S19, bacterial-type RD04_RS18335 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type RD04_RS18335 IPR036394 Ribosomal protein L22/L17 superfamily RD04_RS18335 IPR018260 Ribosomal protein L22/L17, conserved site RD04_RS18335 IPR001063 Ribosomal protein L22/L17 RD04_RS18340 IPR036419 Ribosomal protein S3, C-terminal domain superfamily RD04_RS18340 IPR018280 Ribosomal protein S3, conserved site RD04_RS18340 IPR001351 Ribosomal protein S3, C-terminal RD04_RS18340 IPR005704 Ribosomal protein S3, bacterial-type RD04_RS18340 IPR004087 K Homology domain RD04_RS18340 IPR004044 K Homology domain, type 2 RD04_RS18340 IPR015946 K homology domain-like, alpha/beta RD04_RS18340 IPR009019 K homology domain superfamily, prokaryotic type RD04_RS18345 IPR020798 Ribosomal protein L16, conserved site RD04_RS18345 IPR000114 Ribosomal protein L16 RD04_RS18345 IPR036920 Ribosomal protein L10e/L16 superfamily RD04_RS18345 IPR016180 Ribosomal protein L10e/L16 RD04_RS18350 IPR036049 Ribosomal protein L29/L35 superfamily RD04_RS18350 IPR001854 Ribosomal protein L29/L35 RD04_RS18350 IPR018254 Ribosomal protein L29, conserved site RD04_RS18355 IPR019979 Ribosomal protein S17, conserved site RD04_RS18355 IPR000266 Ribosomal protein S17/S11 RD04_RS18355 IPR019984 30S ribosomal protein S17 RD04_RS18355 IPR012340 Nucleic acid-binding, OB-fold RD04_RS18365 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS18365 IPR016163 Aldehyde dehydrogenase, C-terminal RD04_RS18365 IPR016162 Aldehyde dehydrogenase, N-terminal RD04_RS18365 IPR015590 Aldehyde dehydrogenase domain RD04_RS18375 IPR036853 Ribosomal protein L14 superfamily RD04_RS18375 IPR019972 Ribosomal protein L14P, conserved site RD04_RS18375 IPR000218 Ribosomal protein L14P RD04_RS18375 IPR005745 Ribosomal protein L14P, bacterial-type RD04_RS18380 IPR003256 Ribosomal protein L24 RD04_RS18380 IPR041988 Ribosomal Protein L26/L24, KOW domain RD04_RS18380 IPR014722 Ribosomal protein L2, domain 2 RD04_RS18380 IPR008991 Translation protein SH3-like domain superfamily RD04_RS18380 IPR005825 Ribosomal protein L24/L26, conserved site RD04_RS18385 IPR022803 Ribosomal protein L5 domain superfamily RD04_RS18385 IPR020929 Ribosomal protein L5, conserved site RD04_RS18385 IPR031310 Ribosomal protein L5, N-terminal RD04_RS18385 IPR020930 Ribosomal protein L5, bacterial-type RD04_RS18385 IPR002132 Ribosomal protein L5 RD04_RS18385 IPR031309 Ribosomal protein L5, C-terminal RD04_RS18390 IPR001209 Ribosomal protein S14 RD04_RS18390 IPR023036 Ribosomal protein S14, bacterial/plastid RD04_RS18395 IPR000630 Ribosomal protein S8 RD04_RS18395 IPR035987 Ribosomal protein S8 superfamily RD04_RS18400 IPR000702 Ribosomal protein L6 RD04_RS18400 IPR002358 Ribosomal protein L6, conserved site RD04_RS18400 IPR019906 Ribosomal protein L6, bacterial-type RD04_RS18400 IPR020040 Ribosomal protein L6, alpha-beta domain RD04_RS18400 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily RD04_RS18405 IPR005484 Ribosomal protein L18 RD04_RS18405 IPR004389 Ribosomal protein L18, bacterial-type RD04_RS18410 IPR005324 Ribosomal protein S5, C-terminal RD04_RS18410 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS18410 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD04_RS18410 IPR013810 Ribosomal protein S5, N-terminal RD04_RS18410 IPR018192 Ribosomal protein S5, N-terminal, conserved site RD04_RS18410 IPR005712 Ribosomal protein S5, bacterial-type RD04_RS18410 IPR000851 Ribosomal protein S5 RD04_RS18415 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily RD04_RS18415 IPR005996 Ribosomal protein L30, bacterial-type RD04_RS18415 IPR018038 Ribosomal protein L30, conserved site RD04_RS18415 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RD04_RS18420 IPR030878 Ribosomal protein L15 RD04_RS18420 IPR021131 Ribosomal protein L18e/L15P RD04_RS18420 IPR005749 Ribosomal protein L15, bacterial-type RD04_RS18420 IPR036227 Ribosomal L18e/L15P superfamily RD04_RS18425 IPR023201 SecY domain superfamily RD04_RS18425 IPR026593 Protein translocase subunit SecY RD04_RS18425 IPR002208 SecY/SEC61-alpha family RD04_RS18425 IPR030659 SecY conserved site RD04_RS18430 IPR012340 Nucleic acid-binding, OB-fold RD04_RS18430 IPR004368 Translation initiation factor IF-1 RD04_RS18430 IPR006196 RNA-binding domain, S1, IF1 type RD04_RS18435 IPR000473 Ribosomal protein L36 RD04_RS18435 IPR035977 Ribosomal protein L36 superfamily RD04_RS18440 IPR010979 Ribosomal protein S13-like, H2TH RD04_RS18440 IPR018269 Ribosomal protein S13, conserved site RD04_RS18440 IPR027437 30s ribosomal protein S13, C-terminal RD04_RS18440 IPR019980 Ribosomal protein S13, bacterial-type RD04_RS18440 IPR001892 Ribosomal protein S13 RD04_RS18445 IPR036967 Ribosomal protein S11 superfamily RD04_RS18445 IPR018102 Ribosomal S11, conserved site RD04_RS18445 IPR001971 Ribosomal protein S11 RD04_RS18445 IPR019981 Ribosomal protein S11, bacterial-type RD04_RS18450 IPR005709 Ribosomal protein S4, bacterial-type RD04_RS18450 IPR001912 Ribosomal protein S4/S9, N-terminal RD04_RS18450 IPR036986 RNA-binding S4 domain superfamily RD04_RS18450 IPR002942 RNA-binding S4 domain RD04_RS18450 IPR018079 Ribosomal protein S4, conserved site RD04_RS18450 IPR022801 Ribosomal protein S4/S9 RD04_RS18455 IPR011260 RNA polymerase, alpha subunit, C-terminal RD04_RS18455 IPR011262 DNA-directed RNA polymerase, insert domain RD04_RS18455 IPR036603 RNA polymerase, RBP11-like subunit RD04_RS18455 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type RD04_RS18455 IPR011773 DNA-directed RNA polymerase, alpha subunit RD04_RS18455 IPR036643 DNA-directed RNA polymerase, insert domain superfamily RD04_RS18460 IPR036373 Ribosomal protein L17 superfamily RD04_RS18460 IPR000456 Ribosomal protein L17 RD04_RS18470 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RD04_RS18470 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria RD04_RS18470 IPR004323 Divalent ion tolerance protein, CutA RD04_RS18470 IPR011322 Nitrogen regulatory PII-like, alpha/beta RD04_RS18475 IPR003834 Cytochrome C biogenesis protein, transmembrane domain RD04_RS18475 IPR035671 DsbD gamma RD04_RS18475 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain RD04_RS18475 IPR013766 Thioredoxin domain RD04_RS18475 IPR017937 Thioredoxin, conserved site RD04_RS18475 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily RD04_RS18475 IPR022910 Thiol:disulphide interchange protein DsbD RD04_RS18475 IPR036249 Thioredoxin-like superfamily RD04_RS18480 IPR000620 EamA domain RD04_RS18485 IPR001731 Delta-aminolevulinic acid dehydratase RD04_RS18485 IPR030656 Delta-aminolevulinic acid dehydratase, active site RD04_RS18485 IPR013785 Aldolase-type TIM barrel RD04_RS18490 IPR006073 GTP binding domain RD04_RS18490 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS18490 IPR030393 EngB-type guanine nucleotide-binding (G) domain RD04_RS18490 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC RD04_RS18495 IPR024167 Cytochrome c4-like RD04_RS18495 IPR009056 Cytochrome c-like domain RD04_RS18495 IPR036909 Cytochrome c-like domain superfamily RD04_RS18500 IPR023494 Cytochrome c biogenesis protein Ccs1/CcsB RD04_RS18500 IPR007816 ResB-like domain RD04_RS18505 IPR002541 Cytochrome c assembly protein RD04_RS18505 IPR017562 Cytochrome c-type biogenesis protein CcsA RD04_RS18510 IPR000183 Ornithine/DAP/Arg decarboxylase RD04_RS18510 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RD04_RS18510 IPR029066 PLP-binding barrel RD04_RS18510 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal RD04_RS18510 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal RD04_RS18510 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site RD04_RS18510 IPR002986 Diaminopimelate decarboxylase, LysA RD04_RS18515 IPR020895 Frataxin conserved site RD04_RS18515 IPR002908 Frataxin/CyaY RD04_RS18515 IPR036524 Frataxin/CyaY superfamily RD04_RS18520 IPR031376 Penicillin-binding protein, OB-like domain RD04_RS18520 IPR001264 Glycosyl transferase, family 51 RD04_RS18520 IPR023346 Lysozyme-like domain superfamily RD04_RS18520 IPR036950 Penicillin binding protein transglycosylase domain RD04_RS18520 IPR001460 Penicillin-binding protein, transpeptidase RD04_RS18520 IPR012338 Beta-lactamase/transpeptidase-like RD04_RS18525 IPR023000 Shikimate kinase, conserved site RD04_RS18525 IPR000623 Shikimate kinase/Threonine synthase-like 1 RD04_RS18525 IPR031322 Shikimate kinase/gluconokinase RD04_RS18525 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS18530 IPR030960 3-dehydroquinate synthase domain RD04_RS18530 IPR030963 3-dehydroquinate synthase family RD04_RS18530 IPR016037 3-dehydroquinate synthase AroB RD04_RS18535 IPR006261 dNTP triphosphohydrolase RD04_RS18535 IPR026875 Phosphohydrolase-associated domain RD04_RS18535 IPR006674 HD domain RD04_RS18535 IPR003607 HD/PDEase domain RD04_RS18535 IPR023023 dNTP triphosphohydrolase, type 2 RD04_RS18540 IPR040077 Glutathione S-transferase Theta, C-terminal RD04_RS18540 IPR004045 Glutathione S-transferase, N-terminal RD04_RS18540 IPR010987 Glutathione S-transferase, C-terminal-like RD04_RS18540 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RD04_RS18540 IPR040079 Glutathione Transferase family RD04_RS18540 IPR036249 Thioredoxin-like superfamily RD04_RS18540 IPR004046 Glutathione S-transferase, C-terminal RD04_RS18545 IPR004602 UvrABC system subunit A RD04_RS18545 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS18545 IPR003439 ABC transporter-like RD04_RS18545 IPR017871 ABC transporter, conserved site RD04_RS18545 IPR041102 UvrA, interaction domain RD04_RS18545 IPR041552 UvrA DNA-binding domain RD04_RS18550 IPR011701 Major facilitator superfamily RD04_RS18550 IPR020846 Major facilitator superfamily domain RD04_RS18550 IPR036259 MFS transporter superfamily RD04_RS18555 IPR011344 Single-stranded DNA-binding protein RD04_RS18555 IPR000424 Primosome PriB/single-strand DNA-binding RD04_RS18555 IPR012340 Nucleic acid-binding, OB-fold RD04_RS18560 IPR012910 TonB-dependent receptor, plug domain RD04_RS18560 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RD04_RS18560 IPR037066 TonB-dependent receptor, plug domain superfamily RD04_RS18560 IPR000531 TonB-dependent receptor-like, beta-barrel RD04_RS18560 IPR039423 TonB-dependent receptor-like RD04_RS18560 IPR010105 TonB-dependent siderophore receptor RD04_RS18570 IPR040442 Pyruvate kinase-like domain superfamily RD04_RS18570 IPR005000 HpcH/HpaI aldolase/citrate lyase domain RD04_RS18570 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RD04_RS18580 IPR042100 Bordetella uptake gene, domain 1 RD04_RS18580 IPR005064 Bordetella uptake gene RD04_RS18590 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS18590 IPR000847 Transcription regulator HTH, LysR RD04_RS18590 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS18590 IPR037416 Nodulation protein D, PBP2 RD04_RS18590 IPR005119 LysR, substrate-binding RD04_RS18595 IPR023512 Deaminase MtaD/DadD RD04_RS18595 IPR011059 Metal-dependent hydrolase, composite domain superfamily RD04_RS18595 IPR006680 Amidohydrolase-related RD04_RS18595 IPR032466 Metal-dependent hydrolase RD04_RS18600 IPR005064 Bordetella uptake gene RD04_RS18600 IPR042100 Bordetella uptake gene, domain 1 RD04_RS18600 IPR006311 Twin-arginine translocation pathway, signal sequence RD04_RS18605 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RD04_RS18605 IPR001296 Glycosyl transferase, family 1 RD04_RS18615 IPR005119 LysR, substrate-binding RD04_RS18615 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS18615 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS18615 IPR000847 Transcription regulator HTH, LysR RD04_RS18625 IPR035906 MetI-like superfamily RD04_RS18625 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS18630 IPR003439 ABC transporter-like RD04_RS18630 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS18630 IPR003593 AAA+ ATPase domain RD04_RS18650 IPR006253 Malate synthase G RD04_RS18650 IPR023310 Malate synthase G, beta sub-domain RD04_RS18650 IPR001465 Malate synthase RD04_RS18650 IPR011076 Malate synthase-like superfamily RD04_RS18655 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS18655 IPR000524 Transcription regulator HTH, GntR RD04_RS18655 IPR008920 Transcription regulator FadR/GntR, C-terminal RD04_RS18655 IPR011711 GntR, C-terminal RD04_RS18655 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS18670 IPR006370 4-hydroxybenzoate polyprenyltransferase-like RD04_RS18670 IPR039653 Prenyltransferase RD04_RS18670 IPR000537 UbiA prenyltransferase family RD04_RS18670 IPR030470 UbiA prenyltransferase conserved site RD04_RS18675 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS18675 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS18675 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS18675 IPR004839 Aminotransferase, class I/classII RD04_RS18680 IPR000614 Free Met sulfoxide reductase conserved site RD04_RS18680 IPR029016 GAF-like domain superfamily RD04_RS18680 IPR003018 GAF domain RD04_RS18685 IPR020624 Schiff base-forming aldolase, conserved site RD04_RS18685 IPR013785 Aldolase-type TIM barrel RD04_RS18685 IPR002220 DapA-like RD04_RS18685 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA RD04_RS18695 IPR007055 BON domain RD04_RS18695 IPR018392 LysM domain RD04_RS18695 IPR036779 LysM domain superfamily RD04_RS18695 IPR014004 Transport-associated and nodulation domain, bacteria RD04_RS18700 IPR010035 ThiS, thiamine-biosynthesis RD04_RS18700 IPR013785 Aldolase-type TIM barrel RD04_RS18700 IPR033983 Thiazole synthase ThiG RD04_RS18700 IPR008867 Thiazole synthase RD04_RS18700 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RD04_RS18700 IPR003749 Sulfur carrier ThiS/MoaD-like RD04_RS18700 IPR012675 Beta-grasp domain superfamily RD04_RS18705 IPR002410 Peptidase S33 RD04_RS18705 IPR029058 Alpha/Beta hydrolase fold RD04_RS18705 IPR000073 Alpha/beta hydrolase fold-1 RD04_RS18705 IPR005944 Proline iminopeptidase RD04_RS18710 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS18710 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type RD04_RS18725 IPR013785 Aldolase-type TIM barrel RD04_RS18725 IPR000891 Pyruvate carboxyltransferase RD04_RS18730 IPR042100 Bordetella uptake gene, domain 1 RD04_RS18730 IPR005064 Bordetella uptake gene RD04_RS18745 IPR000524 Transcription regulator HTH, GntR RD04_RS18745 IPR011663 UbiC transcription regulator-associated RD04_RS18745 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RD04_RS18745 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS18745 IPR010248 Histidine utilization repressor RD04_RS18745 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS18750 IPR005064 Bordetella uptake gene RD04_RS18750 IPR042100 Bordetella uptake gene, domain 1 RD04_RS18760 IPR011663 UbiC transcription regulator-associated RD04_RS18760 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS18760 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS18760 IPR010248 Histidine utilization repressor RD04_RS18760 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RD04_RS18760 IPR000524 Transcription regulator HTH, GntR RD04_RS18765 IPR035906 MetI-like superfamily RD04_RS18765 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS18775 IPR003593 AAA+ ATPase domain RD04_RS18775 IPR003439 ABC transporter-like RD04_RS18775 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS18780 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS18780 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS18780 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS18780 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS18785 IPR005064 Bordetella uptake gene RD04_RS18785 IPR042100 Bordetella uptake gene, domain 1 RD04_RS18790 IPR011032 GroES-like superfamily RD04_RS18790 IPR013968 Polyketide synthase, ketoreductase domain RD04_RS18790 IPR014030 Beta-ketoacyl synthase, N-terminal RD04_RS18790 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RD04_RS18790 IPR032821 Ketoacyl-synthetase, C-terminal extension RD04_RS18790 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RD04_RS18790 IPR020807 Polyketide synthase, dehydratase domain RD04_RS18790 IPR014031 Beta-ketoacyl synthase, C-terminal RD04_RS18790 IPR036291 NAD(P)-binding domain superfamily RD04_RS18790 IPR042104 Polyketide synthase, dehydratase domain superfamily RD04_RS18790 IPR014043 Acyl transferase RD04_RS18790 IPR016039 Thiolase-like RD04_RS18790 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site RD04_RS18790 IPR006162 Phosphopantetheine attachment site RD04_RS18790 IPR009081 Phosphopantetheine binding ACP domain RD04_RS18790 IPR015083 Polyketide synthase, docking domain RD04_RS18790 IPR013154 Alcohol dehydrogenase, N-terminal RD04_RS18790 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RD04_RS18790 IPR018201 Beta-ketoacyl synthase, active site RD04_RS18790 IPR036736 ACP-like superfamily RD04_RS18790 IPR020806 Polyketide synthase, phosphopantetheine-binding domain RD04_RS18790 IPR020843 Polyketide synthase, enoylreductase domain RD04_RS18790 IPR001227 Acyl transferase domain superfamily RD04_RS18795 IPR003673 CoA-transferase family III RD04_RS18795 IPR023606 CoA-transferase family III domain superfamily RD04_RS18800 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RD04_RS18800 IPR001647 DNA-binding HTH domain, TetR-type RD04_RS18800 IPR009057 Homeobox-like domain superfamily RD04_RS18805 IPR020084 NUDIX hydrolase, conserved site RD04_RS18805 IPR000086 NUDIX hydrolase domain RD04_RS18805 IPR015797 NUDIX hydrolase-like domain superfamily RD04_RS18805 IPR022925 NADH pyrophosphatase NudC RD04_RS18805 IPR015376 Zinc ribbon, NADH pyrophosphatase RD04_RS18810 IPR012675 Beta-grasp domain superfamily RD04_RS18810 IPR036010 2Fe-2S ferredoxin-like superfamily RD04_RS18810 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RD04_RS18810 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RD04_RS18810 IPR039003 Carnitine monooxygenase reductase subunit RD04_RS18810 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain RD04_RS18810 IPR017927 FAD-binding domain, ferredoxin reductase-type RD04_RS18810 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RD04_RS18810 IPR001433 Oxidoreductase FAD/NAD(P)-binding RD04_RS18810 IPR000951 Phthalate dioxygenase reductase RD04_RS18810 IPR017938 Riboflavin synthase-like beta-barrel RD04_RS18815 IPR036928 Amidase signature (AS) superfamily RD04_RS18815 IPR000120 Amidase RD04_RS18815 IPR020556 Amidase, conserved site RD04_RS18815 IPR023631 Amidase signature domain RD04_RS18815 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit RD04_RS18825 IPR036390 Winged helix DNA-binding domain superfamily RD04_RS18825 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS18825 IPR000847 Transcription regulator HTH, LysR RD04_RS18825 IPR005119 LysR, substrate-binding RD04_RS18830 IPR000709 Leu/Ile/Val-binding protein RD04_RS18830 IPR028082 Periplasmic binding protein-like I RD04_RS18830 IPR028081 Leucine-binding protein domain RD04_RS18840 IPR003593 AAA+ ATPase domain RD04_RS18840 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein RD04_RS18840 IPR017871 ABC transporter, conserved site RD04_RS18840 IPR003439 ABC transporter-like RD04_RS18840 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS18850 IPR001851 ABC transporter, permease RD04_RS18860 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site RD04_RS18860 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily RD04_RS18860 IPR017941 Rieske [2Fe-2S] iron-sulphur domain RD04_RS18875 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD RD04_RS18875 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal RD04_RS18875 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily RD04_RS18875 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal RD04_RS18875 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal RD04_RS18875 IPR013785 Aldolase-type TIM barrel RD04_RS18875 IPR004393 Nicotinate-nucleotide pyrophosphorylase RD04_RS18890 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RD04_RS18890 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation RD04_RS18890 IPR036291 NAD(P)-binding domain superfamily RD04_RS18890 IPR017476 UDP-glucose/GDP-mannose dehydrogenase RD04_RS18890 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal RD04_RS18890 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type RD04_RS18890 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal RD04_RS18890 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily RD04_RS18895 IPR020846 Major facilitator superfamily domain RD04_RS18895 IPR036259 MFS transporter superfamily RD04_RS18895 IPR011701 Major facilitator superfamily RD04_RS18900 IPR029044 Nucleotide-diphospho-sugar transferases RD04_RS18900 IPR025877 MobA-like NTP transferase RD04_RS18900 IPR018357 Hexapeptide transferase, conserved site RD04_RS18900 IPR001451 Hexapeptide repeat RD04_RS18900 IPR038009 GlmU, C-terminal LbH domain RD04_RS18900 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase RD04_RS18900 IPR011004 Trimeric LpxA-like superfamily RD04_RS18920 IPR036249 Thioredoxin-like superfamily RD04_RS18920 IPR003782 Copper chaperone SCO1/SenC RD04_RS18925 IPR000537 UbiA prenyltransferase family RD04_RS18925 IPR006369 Protohaem IX farnesyltransferase RD04_RS18930 IPR003780 COX15/CtaA family RD04_RS18930 IPR023755 Heme A synthase, type 1 RD04_RS18950 IPR024791 Cytochrome c oxidase subunit III RD04_RS18950 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle RD04_RS18950 IPR033945 Cytochrome c oxidase subunit III domain RD04_RS18950 IPR035973 Cytochrome c oxidase subunit III-like superfamily RD04_RS18950 IPR000298 Cytochrome c oxidase subunit III-like RD04_RS18965 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site RD04_RS18965 IPR023616 Cytochrome c oxidase-like, subunit I domain RD04_RS18965 IPR036927 Cytochrome c oxidase-like, subunit I superfamily RD04_RS18965 IPR000883 Cytochrome c oxidase subunit I RD04_RS18965 IPR033944 Cytochrome c oxidase subunit I domain RD04_RS18965 IPR014241 Cytochrome c oxidase, subunit I bacterial type RD04_RS18970 IPR002429 Cytochrome c oxidase subunit II-like C-terminal RD04_RS18970 IPR001505 Copper centre Cu(A) RD04_RS18970 IPR008972 Cupredoxin RD04_RS18970 IPR014222 Cytochrome c oxidase, subunit II RD04_RS18970 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily RD04_RS18970 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain RD04_RS18980 IPR006153 Cation/H+ exchanger RD04_RS18980 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria RD04_RS18980 IPR038770 Sodium/solute symporter superfamily RD04_RS18980 IPR018422 Cation/H+ exchanger, CPA1 family RD04_RS18985 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA RD04_RS18985 IPR029052 Metallo-dependent phosphatase-like RD04_RS18985 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type RD04_RS18990 IPR013324 RNA polymerase sigma factor, region 3/4-like RD04_RS18990 IPR014284 RNA polymerase sigma-70 like domain RD04_RS18990 IPR009042 RNA polymerase sigma-70 region 1.2 RD04_RS18990 IPR013325 RNA polymerase sigma factor, region 2 RD04_RS18990 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria RD04_RS18990 IPR000943 RNA polymerase sigma-70 RD04_RS18990 IPR007630 RNA polymerase sigma-70 region 4 RD04_RS18990 IPR007627 RNA polymerase sigma-70 region 2 RD04_RS19000 IPR014186 S-formylglutathione hydrolase RD04_RS19000 IPR029058 Alpha/Beta hydrolase fold RD04_RS19000 IPR000801 Putative esterase RD04_RS19005 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site RD04_RS19005 IPR011032 GroES-like superfamily RD04_RS19005 IPR013154 Alcohol dehydrogenase, N-terminal RD04_RS19005 IPR014183 Alcohol dehydrogenase class III RD04_RS19005 IPR013149 Alcohol dehydrogenase, C-terminal RD04_RS19005 IPR036291 NAD(P)-binding domain superfamily RD04_RS19015 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily RD04_RS19015 IPR002932 Glutamate synthase domain RD04_RS19015 IPR002489 Glutamate synthase, alpha subunit, C-terminal RD04_RS19015 IPR006982 Glutamate synthase, central-N RD04_RS19015 IPR029055 Nucleophile aminohydrolases, N-terminal RD04_RS19015 IPR013785 Aldolase-type TIM barrel RD04_RS19015 IPR017932 Glutamine amidotransferase type 2 domain RD04_RS19020 IPR009051 Alpha-helical ferredoxin RD04_RS19020 IPR023753 FAD/NAD(P)-binding domain RD04_RS19020 IPR028261 Dihydroprymidine dehydrogenase domain II RD04_RS19020 IPR036188 FAD/NAD(P)-binding domain superfamily RD04_RS19020 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 RD04_RS19025 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RD04_RS19025 IPR005618 Outer membrane protein, OmpW RD04_RS19030 IPR042100 Bordetella uptake gene, domain 1 RD04_RS19030 IPR005064 Bordetella uptake gene RD04_RS19035 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl RD04_RS19035 IPR017871 ABC transporter, conserved site RD04_RS19035 IPR003439 ABC transporter-like RD04_RS19035 IPR003593 AAA+ ATPase domain RD04_RS19035 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19040 IPR003453 ABC transport permease subunit MlaE, Proteobacteria RD04_RS19040 IPR030802 ABC transporter permease MalE RD04_RS19045 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD RD04_RS19045 IPR003399 Mce/MlaD RD04_RS19050 IPR007428 MlaA lipoprotein RD04_RS19060 IPR003593 AAA+ ATPase domain RD04_RS19060 IPR003439 ABC transporter-like RD04_RS19060 IPR017871 ABC transporter, conserved site RD04_RS19060 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19065 IPR000412 ABC-2 transporter RD04_RS19065 IPR013525 ABC-2 type transporter RD04_RS19080 IPR001986 Enolpyruvate transferase domain RD04_RS19080 IPR036968 Enolpyruvate transferase domain superfamily RD04_RS19080 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase RD04_RS19080 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RD04_RS19085 IPR024893 ATP phosphoribosyltransferase HisG, short form RD04_RS19085 IPR001348 ATP phosphoribosyltransferase HisG RD04_RS19085 IPR018198 ATP phosphoribosyltransferase, conserved site RD04_RS19085 IPR013820 ATP phosphoribosyltransferase, catalytic domain RD04_RS19090 IPR022695 Histidinol dehydrogenase, monofunctional RD04_RS19090 IPR016161 Aldehyde/histidinol dehydrogenase RD04_RS19090 IPR001692 Histidinol dehydrogenase, conserved site RD04_RS19090 IPR012131 Histidinol dehydrogenase RD04_RS19095 IPR004839 Aminotransferase, class I/classII RD04_RS19095 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS19095 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS19095 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS19095 IPR005861 Histidinol-phosphate aminotransferase family RD04_RS19100 IPR000807 Imidazoleglycerol-phosphate dehydratase RD04_RS19100 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site RD04_RS19100 IPR020568 Ribosomal protein S5 domain 2-type fold RD04_RS19100 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily RD04_RS19110 IPR013785 Aldolase-type TIM barrel RD04_RS19110 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA RD04_RS19110 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase RD04_RS19110 IPR006062 Histidine biosynthesis RD04_RS19110 IPR011060 Ribulose-phosphate binding barrel RD04_RS19115 IPR004651 Histidine biosynthesis, HisF RD04_RS19115 IPR006062 Histidine biosynthesis RD04_RS19115 IPR013785 Aldolase-type TIM barrel RD04_RS19115 IPR011060 Ribulose-phosphate binding barrel RD04_RS19120 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily RD04_RS19120 IPR026660 Phosphoribosyl-AMP cyclohydrolase RD04_RS19120 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain RD04_RS19125 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase RD04_RS19125 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like RD04_RS19130 IPR001310 Histidine triad (HIT) protein RD04_RS19130 IPR019808 Histidine triad, conserved site RD04_RS19130 IPR036265 HIT-like superfamily RD04_RS19130 IPR011146 HIT-like domain RD04_RS19135 IPR006312 Sec-independent protein translocase protein TatA/E RD04_RS19135 IPR003369 Sec-independent protein translocase protein TatA/B/E RD04_RS19140 IPR003369 Sec-independent protein translocase protein TatA/B/E RD04_RS19140 IPR018448 Twin-arginine translocation protein TatB RD04_RS19145 IPR002033 Sec-independent periplasmic protein translocase TatC RD04_RS19145 IPR019820 Sec-independent periplasmic protein translocase, conserved site RD04_RS19155 IPR005064 Bordetella uptake gene RD04_RS19155 IPR042100 Bordetella uptake gene, domain 1 RD04_RS19160 IPR003898 Bordetella pertussis toxin A RD04_RS19165 IPR008992 Enterotoxin RD04_RS19165 IPR016187 C-type lectin fold RD04_RS19165 IPR020063 Bordetella pertussis toxin B, subunit 2/3, C-terminal RD04_RS19165 IPR037015 Aerolysin/Pertussis toxin (APT), N-terminal domain superfamily RD04_RS19165 IPR003899 Bordetella pertussis toxin B RD04_RS19165 IPR005138 Aerolysin/Pertussis toxin domain RD04_RS19170 IPR015355 Pertussis toxin, subunit S4 RD04_RS19170 IPR008992 Enterotoxin RD04_RS19175 IPR015356 Pertussis toxin, subunit S5 RD04_RS19175 IPR008992 Enterotoxin RD04_RS19180 IPR037015 Aerolysin/Pertussis toxin (APT), N-terminal domain superfamily RD04_RS19180 IPR020063 Bordetella pertussis toxin B, subunit 2/3, C-terminal RD04_RS19180 IPR003899 Bordetella pertussis toxin B RD04_RS19180 IPR008992 Enterotoxin RD04_RS19180 IPR016187 C-type lectin fold RD04_RS19180 IPR005138 Aerolysin/Pertussis toxin domain RD04_RS19185 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RD04_RS19190 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB RD04_RS19195 IPR004346 CagE, TrbE, VirB component of type IV transporter system RD04_RS19195 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain RD04_RS19195 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19200 IPR007688 Plasmid conjugal transfer TrbL/VirB6 RD04_RS19210 IPR007430 Bacterial virulence protein VirB8 RD04_RS19210 IPR032710 NTF2-like domain superfamily RD04_RS19210 IPR026264 Type IV secretion system protein VirB8/PtlE RD04_RS19215 IPR010258 Conjugal transfer, TrbG/VirB9/CagX RD04_RS19215 IPR033645 VirB9/CagX/TrbG, C-terminal RD04_RS19215 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily RD04_RS19215 IPR014148 P-type conjugative transfer protein VirB9 RD04_RS19220 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI RD04_RS19220 IPR042217 Type IV secretion system, VirB10/TrbI RD04_RS19225 IPR014155 Type IV secretion system protein VirB11 RD04_RS19225 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19225 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RD04_RS19225 IPR001482 Type II/IV secretion system protein RD04_RS19235 IPR000620 EamA domain RD04_RS19255 IPR025867 MnmE, helical domain RD04_RS19255 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19255 IPR027368 tRNA modification GTPase MnmE domain 2 RD04_RS19255 IPR004520 tRNA modification GTPase MnmE RD04_RS19255 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 RD04_RS19255 IPR005225 Small GTP-binding protein domain RD04_RS19255 IPR006073 GTP binding domain RD04_RS19255 IPR018948 GTP-binding protein TrmE, N-terminal RD04_RS19255 IPR031168 TrmE-type guanine nucleotide-binding domain RD04_RS19260 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS19260 IPR039424 Solute-binding protein family 5 RD04_RS19260 IPR023765 Solute-binding protein family 5, conserved site RD04_RS19260 IPR000914 Solute-binding protein family 5 domain RD04_RS19265 IPR035906 MetI-like superfamily RD04_RS19265 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS19270 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD04_RS19270 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS19270 IPR035906 MetI-like superfamily RD04_RS19275 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19275 IPR003593 AAA+ ATPase domain RD04_RS19275 IPR003439 ABC transporter-like RD04_RS19275 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS19275 IPR017871 ABC transporter, conserved site RD04_RS19285 IPR016117 ArgJ-like domain superfamily RD04_RS19285 IPR002813 Arginine biosynthesis protein ArgJ RD04_RS19285 IPR042195 ArgJ beta chain, C-terminal domain RD04_RS19295 IPR000086 NUDIX hydrolase domain RD04_RS19295 IPR020084 NUDIX hydrolase, conserved site RD04_RS19295 IPR015797 NUDIX hydrolase-like domain superfamily RD04_RS19295 IPR020476 NUDIX hydrolase RD04_RS19310 IPR010131 RND efflux system, outer membrane lipoprotein, NodT RD04_RS19310 IPR003423 Outer membrane efflux protein RD04_RS19315 IPR001036 Acriflavin resistance protein RD04_RS19315 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD04_RS19315 IPR023931 Multidrug resistance protein MdtC RD04_RS19320 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD04_RS19320 IPR001036 Acriflavin resistance protein RD04_RS19320 IPR022831 Multidrug resistance protein MdtB RD04_RS19325 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RD04_RS19325 IPR006143 RND efflux pump, membrane fusion protein RD04_RS19325 IPR022824 Multidrug resistance protein MdtA RD04_RS19330 IPR009777 Cell division protein ZapD RD04_RS19330 IPR036268 ZapD domain superfamily RD04_RS19330 IPR027462 Z ring-associated protein D, C-terminal RD04_RS19335 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19335 IPR001977 Dephospho-CoA kinase RD04_RS19340 IPR000045 Prepilin type IV endopeptidase, peptidase domain RD04_RS19340 IPR014032 Peptidase A24A, prepilin type IV, bacterial RD04_RS19340 IPR010627 Peptidase A24A, N-terminal RD04_RS19355 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD04_RS19355 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain RD04_RS19355 IPR003721 Pantoate-beta-alanine ligase RD04_RS19355 IPR004821 Cytidyltransferase-like domain RD04_RS19360 IPR003768 Segregation and condensation protein A RD04_RS19370 IPR036259 MFS transporter superfamily RD04_RS19370 IPR020846 Major facilitator superfamily domain RD04_RS19370 IPR011701 Major facilitator superfamily RD04_RS19370 IPR004638 Drug resistance transporter EmrB-like RD04_RS19375 IPR018485 Carbohydrate kinase, FGGY, C-terminal RD04_RS19375 IPR018483 Carbohydrate kinase, FGGY, conserved site RD04_RS19375 IPR018484 Carbohydrate kinase, FGGY, N-terminal RD04_RS19375 IPR005999 Glycerol kinase RD04_RS19375 IPR000577 Carbohydrate kinase, FGGY RD04_RS19385 IPR005064 Bordetella uptake gene RD04_RS19385 IPR042100 Bordetella uptake gene, domain 1 RD04_RS19390 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type RD04_RS19390 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19390 IPR017871 ABC transporter, conserved site RD04_RS19390 IPR003439 ABC transporter-like RD04_RS19390 IPR003593 AAA+ ATPase domain RD04_RS19395 IPR035906 MetI-like superfamily RD04_RS19395 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS19395 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS19400 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS19400 IPR035906 MetI-like superfamily RD04_RS19400 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RD04_RS19405 IPR018313 Solute-binding protein family 3, conserved site RD04_RS19405 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD04_RS19405 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter RD04_RS19410 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19410 IPR005286 Cell division protein FtsE, ATP-binding RD04_RS19410 IPR017871 ABC transporter, conserved site RD04_RS19410 IPR003439 ABC transporter-like RD04_RS19410 IPR003593 AAA+ ATPase domain RD04_RS19415 IPR040690 FtsX, extracellular domain RD04_RS19415 IPR004513 Cell division protein FtsX RD04_RS19420 IPR011324 Cytotoxic necrotizing factor-like, catalytic RD04_RS19420 IPR038592 CheD-like superfamily RD04_RS19420 IPR005659 Chemoreceptor glutamine deamidase CheD RD04_RS19430 IPR003265 HhH-GPD domain RD04_RS19430 IPR000445 Helix-hairpin-helix motif RD04_RS19430 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RD04_RS19430 IPR004036 Endonuclease III-like, conserved site-2 RD04_RS19430 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif RD04_RS19430 IPR015797 NUDIX hydrolase-like domain superfamily RD04_RS19430 IPR004035 Endonuclease III, iron-sulphur binding site RD04_RS19430 IPR011257 DNA glycosylase RD04_RS19430 IPR005760 A/G-specific adenine glycosylase MutY RD04_RS19430 IPR029119 MutY, C-terminal RD04_RS19440 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD04_RS19440 IPR013216 Methyltransferase type 11 RD04_RS19455 IPR003673 CoA-transferase family III RD04_RS19455 IPR023606 CoA-transferase family III domain superfamily RD04_RS19460 IPR023606 CoA-transferase family III domain superfamily RD04_RS19460 IPR003673 CoA-transferase family III RD04_RS19470 IPR042100 Bordetella uptake gene, domain 1 RD04_RS19470 IPR005064 Bordetella uptake gene RD04_RS19475 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS19475 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS19475 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS19475 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS19480 IPR000415 Nitroreductase-like RD04_RS19480 IPR029479 Nitroreductase RD04_RS19490 IPR000891 Pyruvate carboxyltransferase RD04_RS19490 IPR013785 Aldolase-type TIM barrel RD04_RS19490 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site RD04_RS19495 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site RD04_RS19495 IPR014748 Enoyl-CoA hydratase, C-terminal RD04_RS19495 IPR001753 Enoyl-CoA hydratase/isomerase RD04_RS19495 IPR029045 ClpP/crotonase-like domain superfamily RD04_RS19500 IPR003673 CoA-transferase family III RD04_RS19500 IPR023606 CoA-transferase family III domain superfamily RD04_RS19505 IPR042100 Bordetella uptake gene, domain 1 RD04_RS19505 IPR005064 Bordetella uptake gene RD04_RS19515 IPR002226 Catalase haem-binding site RD04_RS19515 IPR024708 Catalase active site RD04_RS19515 IPR040333 Catalase, clade 3 RD04_RS19515 IPR018028 Catalase, mono-functional, haem-containing RD04_RS19515 IPR037060 Catalase core domain superfamily RD04_RS19515 IPR011614 Catalase core domain RD04_RS19515 IPR010582 Catalase immune-responsive domain RD04_RS19515 IPR020835 Catalase superfamily RD04_RS19515 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 RD04_RS19520 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS19520 IPR035906 MetI-like superfamily RD04_RS19525 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19525 IPR015859 ABC transporter, taurine import, TauD RD04_RS19525 IPR017871 ABC transporter, conserved site RD04_RS19525 IPR003439 ABC transporter-like RD04_RS19525 IPR003593 AAA+ ATPase domain RD04_RS19535 IPR003819 TauD/TfdA-like domain RD04_RS19535 IPR042098 Taurine dioxygenase TauD-like superfamily RD04_RS19535 IPR006189 CHASE domain RD04_RS19540 IPR036264 Bacterial exopeptidase dimerisation domain RD04_RS19540 IPR002933 Peptidase M20 RD04_RS19540 IPR011650 Peptidase M20, dimerisation domain RD04_RS19540 IPR017439 Amidohydrolase RD04_RS19545 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19545 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS19545 IPR017871 ABC transporter, conserved site RD04_RS19545 IPR003439 ABC transporter-like RD04_RS19545 IPR003593 AAA+ ATPase domain RD04_RS19550 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19550 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal RD04_RS19550 IPR017871 ABC transporter, conserved site RD04_RS19550 IPR003593 AAA+ ATPase domain RD04_RS19550 IPR003439 ABC transporter-like RD04_RS19555 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD04_RS19555 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS19555 IPR035906 MetI-like superfamily RD04_RS19560 IPR035906 MetI-like superfamily RD04_RS19560 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RD04_RS19565 IPR030678 Peptide/nickel binding protein, MppA-type RD04_RS19565 IPR039424 Solute-binding protein family 5 RD04_RS19565 IPR000914 Solute-binding protein family 5 domain RD04_RS19565 IPR023765 Solute-binding protein family 5, conserved site RD04_RS19570 IPR018948 GTP-binding protein TrmE, N-terminal RD04_RS19570 IPR006073 GTP binding domain RD04_RS19570 IPR004520 tRNA modification GTPase MnmE RD04_RS19570 IPR027368 tRNA modification GTPase MnmE domain 2 RD04_RS19570 IPR025867 MnmE, helical domain RD04_RS19570 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD04_RS19570 IPR005225 Small GTP-binding protein domain RD04_RS19570 IPR031168 TrmE-type guanine nucleotide-binding domain RD04_RS19570 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 RD04_RS19580 IPR001789 Signal transduction response regulator, receiver domain RD04_RS19580 IPR001867 OmpR/PhoB-type DNA-binding domain RD04_RS19580 IPR011006 CheY-like superfamily RD04_RS19580 IPR016032 Signal transduction response regulator, C-terminal effector RD04_RS19580 IPR036388 Winged helix-like DNA-binding domain superfamily RD04_RS19580 IPR039420 Transcriptional regulatory protein WalR-like RD04_RS19585 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RD04_RS19585 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RD04_RS19585 IPR003660 HAMP domain RD04_RS19585 IPR003594 Histidine kinase/HSP90-like ATPase RD04_RS19585 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RD04_RS19585 IPR005467 Histidine kinase domain RD04_RS19585 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RD04_RS19600 IPR002823 Protein of unknown function DUF112, transmembrane RD04_RS19605 IPR015424 Pyridoxal phosphate-dependent transferase RD04_RS19605 IPR004839 Aminotransferase, class I/classII RD04_RS19605 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RD04_RS19605 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RD04_RS19610 IPR012156 Cold shock, CspA RD04_RS19610 IPR019844 Cold-shock (CSD) domain RD04_RS19610 IPR012340 Nucleic acid-binding, OB-fold RD04_RS19610 IPR011129 Cold shock domain RD04_RS19610 IPR002059 Cold-shock protein, DNA-binding