##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM160513v1 #!genome-build-accession NCBI_Assembly:GCF_001605135.1 ##sequence-region NZ_CP010961.1 1 4111050 ##species http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=520 NZ_CP010961.1 RefSeq region 1 4111050 . + . ID=id0;Dbxref=taxon:520;Is_circular=true;Name=ANONYMOUS;collection-date=2010;country=USA:CA;gbkey=Src;genome=chromosome;isolate=H375;mol_type=genomic DNA;nat-host=Homo sapiens NZ_CP010961.1 RefSeq gene 1 1920 . + . ID=gene0;Name=gidA;gbkey=Gene;gene=gidA;gene_biotype=protein_coding;locus_tag=RD04_RS00005;old_locus_tag=RD04_00005 NZ_CP010961.1 Protein Homology CDS 1 1920 . + 0 ID=cds0;Parent=gene0;Dbxref=Genbank:WP_010929569.1;Name=WP_010929569.1;Note=GidA%3B glucose-inhibited cell division protein A%3B involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs;gbkey=CDS;gene=gidA;product=tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG;protein_id=WP_010929569.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1917 2609 . + . ID=gene1;Name=RD04_RS00010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00010;old_locus_tag=RD04_00010 NZ_CP010961.1 Protein Homology CDS 1917 2609 . + 0 ID=cds1;Parent=gene1;Dbxref=Genbank:WP_003806878.1;Name=WP_003806878.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase G;protein_id=WP_003806878.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2606 3403 . + . ID=gene2;Name=RD04_RS00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00015;old_locus_tag=RD04_00015 NZ_CP010961.1 Protein Homology CDS 2606 3403 . + 0 ID=cds2;Parent=gene2;Dbxref=Genbank:WP_003806879.1;Name=WP_003806879.1;gbkey=CDS;product=cobyric acid synthase CobQ;protein_id=WP_003806879.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3410 4171 . + . ID=gene3;Name=RD04_RS00020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00020;old_locus_tag=RD04_00020 NZ_CP010961.1 Protein Homology CDS 3410 4171 . + 0 ID=cds3;Parent=gene3;Dbxref=Genbank:WP_010929570.1;Name=WP_010929570.1;gbkey=CDS;product=GNAT family acetyltransferase;protein_id=WP_010929570.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4215 5132 . + . ID=gene4;Name=RD04_RS00025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00025;old_locus_tag=RD04_00025 NZ_CP010961.1 Protein Homology CDS 4215 5132 . + 0 ID=cds4;Parent=gene4;Dbxref=Genbank:WP_010929571.1;Name=WP_010929571.1;gbkey=CDS;product=chromosome partitioning protein ParB;protein_id=WP_010929571.1;transl_table=11 NZ_CP010961.1 RefSeq gene 5125 5910 . + . ID=gene5;Name=RD04_RS00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00030;old_locus_tag=RD04_00030 NZ_CP010961.1 Protein Homology CDS 5125 5910 . + 0 ID=cds5;Parent=gene5;Dbxref=Genbank:WP_019247667.1;Name=WP_019247667.1;gbkey=CDS;product=L-asparaginase;protein_id=WP_019247667.1;transl_table=11 NZ_CP010961.1 RefSeq gene 5944 6126 . + . ID=gene6;Name=RD04_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00035;old_locus_tag=RD04_00035 NZ_CP010961.1 Protein Homology CDS 5944 6126 . + 0 ID=cds6;Parent=gene6;Dbxref=Genbank:WP_019247666.1;Name=WP_019247666.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247666.1;transl_table=11 NZ_CP010961.1 RefSeq gene 6236 6322 . + . ID=gene7;Name=RD04_RS00040;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS00040;old_locus_tag=RD04_00040 NZ_CP010961.1 tRNAscan-SE tRNA 6236 6322 . + . ID=rna0;Parent=gene7;anticodon=(pos:6270..6272);gbkey=tRNA;product=tRNA-Tyr NZ_CP010961.1 tRNAscan-SE exon 6236 6322 . + . ID=id1;Parent=rna0;anticodon=(pos:6270..6272);gbkey=tRNA;product=tRNA-Tyr NZ_CP010961.1 RefSeq gene 6511 6584 . + . ID=gene8;Name=RD04_RS00045;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS00045;old_locus_tag=RD04_00045 NZ_CP010961.1 tRNAscan-SE tRNA 6511 6584 . + . ID=rna1;Parent=gene8;anticodon=(pos:6543..6545);gbkey=tRNA;product=tRNA-Gly NZ_CP010961.1 tRNAscan-SE exon 6511 6584 . + . ID=id2;Parent=rna1;anticodon=(pos:6543..6545);gbkey=tRNA;product=tRNA-Gly NZ_CP010961.1 RefSeq gene 6591 6665 . + . ID=gene9;Name=RD04_RS00050;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS00050;old_locus_tag=RD04_00050 NZ_CP010961.1 tRNAscan-SE tRNA 6591 6665 . + . ID=rna2;Parent=gene9;anticodon=(pos:6623..6625);gbkey=tRNA;product=tRNA-Thr NZ_CP010961.1 tRNAscan-SE exon 6591 6665 . + . ID=id3;Parent=rna2;anticodon=(pos:6623..6625);gbkey=tRNA;product=tRNA-Thr NZ_CP010961.1 RefSeq gene 6722 7912 . + . ID=gene10;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=RD04_RS00055;old_locus_tag=RD04_00055 NZ_CP010961.1 Protein Homology CDS 6722 7912 . + 0 ID=cds7;Parent=gene10;Dbxref=Genbank:WP_003806883.1;Name=WP_003806883.1;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;gbkey=CDS;gene=tuf;product=elongation factor Tu;protein_id=WP_003806883.1;transl_table=11 NZ_CP010961.1 RefSeq gene 8023 8098 . + . ID=gene11;Name=RD04_RS00060;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS00060;old_locus_tag=RD04_00060 NZ_CP010961.1 tRNAscan-SE tRNA 8023 8098 . + . ID=rna3;Parent=gene11;anticodon=(pos:8056..8058);gbkey=tRNA;product=tRNA-Trp NZ_CP010961.1 tRNAscan-SE exon 8023 8098 . + . ID=id4;Parent=rna3;anticodon=(pos:8056..8058);gbkey=tRNA;product=tRNA-Trp NZ_CP010961.1 RefSeq gene 8151 8531 . + . ID=gene12;Name=RD04_RS00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00065;old_locus_tag=RD04_00065 NZ_CP010961.1 Protein Homology CDS 8151 8531 . + 0 ID=cds8;Parent=gene12;Dbxref=Genbank:WP_003806884.1;Name=WP_003806884.1;gbkey=CDS;product=preprotein translocase subunit SecE;protein_id=WP_003806884.1;transl_table=11 NZ_CP010961.1 RefSeq gene 8541 9074 . + . ID=gene13;Name=RD04_RS00070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00070;old_locus_tag=RD04_00070 NZ_CP010961.1 Protein Homology CDS 8541 9074 . + 0 ID=cds9;Parent=gene13;Dbxref=Genbank:WP_003806885.1;Name=WP_003806885.1;gbkey=CDS;product=transcription termination/antitermination protein NusG;protein_id=WP_003806885.1;transl_table=11 NZ_CP010961.1 RefSeq gene 9138 9569 . + . ID=gene14;Name=RD04_RS00075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00075;old_locus_tag=RD04_00075 NZ_CP010961.1 Protein Homology CDS 9138 9569 . + 0 ID=cds10;Parent=gene14;Dbxref=Genbank:WP_010929572.1;Name=WP_010929572.1;gbkey=CDS;product=50S ribosomal protein L11;protein_id=WP_010929572.1;transl_table=11 NZ_CP010961.1 RefSeq gene 9572 10270 . + . ID=gene15;Name=RD04_RS00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00080;old_locus_tag=RD04_00080 NZ_CP010961.1 Protein Homology CDS 9572 10270 . + 0 ID=cds11;Parent=gene15;Dbxref=Genbank:WP_003806887.1;Name=WP_003806887.1;gbkey=CDS;product=50S ribosomal protein L1;protein_id=WP_003806887.1;transl_table=11 NZ_CP010961.1 RefSeq gene 10513 11037 . + . ID=gene16;Name=RD04_RS00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00085;old_locus_tag=RD04_00085 NZ_CP010961.1 Protein Homology CDS 10513 11037 . + 0 ID=cds12;Parent=gene16;Dbxref=Genbank:WP_003806888.1;Name=WP_003806888.1;gbkey=CDS;product=50S ribosomal protein L10;protein_id=WP_003806888.1;transl_table=11 NZ_CP010961.1 RefSeq gene 11119 11502 . + . ID=gene17;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=RD04_RS00090;old_locus_tag=RD04_00090 NZ_CP010961.1 Protein Homology CDS 11119 11502 . + 0 ID=cds13;Parent=gene17;Dbxref=Genbank:WP_003806889.1;Name=WP_003806889.1;Note=present in two forms%3B L12 is normal%2C while L7 is aminoacylated at the N-terminal serine%3B the only multicopy ribosomal protein%3B 4:1 ratio of L7/L12 per ribosome%3B two L12 dimers bind L10%3B critically important for translation efficiency and fidelity%3B stimulates GTPase activity of translation factors;gbkey=CDS;gene=rplL;product=50S ribosomal protein L7/L12;protein_id=WP_003806889.1;transl_table=11 NZ_CP010961.1 RefSeq gene 11662 15774 . + . ID=gene18;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=RD04_RS00095;old_locus_tag=RD04_00095 NZ_CP010961.1 Protein Homology CDS 11662 15774 . + 0 ID=cds14;Parent=gene18;Dbxref=Genbank:WP_010929573.1;Name=WP_010929573.1;Note=DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme;gbkey=CDS;gene=rpoB;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_010929573.1;transl_table=11 NZ_CP010961.1 RefSeq gene 15774 20018 . + . ID=gene19;Name=RD04_RS00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00100;old_locus_tag=RD04_00100 NZ_CP010961.1 Protein Homology CDS 15774 20018 . + 0 ID=cds15;Parent=gene19;Dbxref=Genbank:WP_003818292.1;Name=WP_003818292.1;Note=DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter;gbkey=CDS;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_003818292.1;transl_table=11 NZ_CP010961.1 RefSeq gene 20127 20531 . - . ID=gene20;Name=RD04_RS00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00105;old_locus_tag=RD04_00105 NZ_CP010961.1 Protein Homology CDS 20127 20531 . - 0 ID=cds16;Parent=gene20;Dbxref=Genbank:WP_010929574.1;Name=WP_010929574.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010929574.1;transl_table=11 NZ_CP010961.1 RefSeq gene 20772 21947 . + . ID=gene21;Name=RD04_RS00110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00110;old_locus_tag=RD04_00110 NZ_CP010961.1 Protein Homology CDS 20772 21947 . + 0 ID=cds17;Parent=gene21;Dbxref=Genbank:WP_010929575.1;Name=WP_010929575.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929575.1;transl_table=11 NZ_CP010961.1 RefSeq gene 22008 24351 . - . ID=gene22;Name=RD04_RS00115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00115;old_locus_tag=RD04_00115;pseudo=true NZ_CP010961.1 Protein Homology CDS 22008 24351 . - 0 ID=cds18;Parent=gene22;Note=frameshifted;gbkey=CDS;product=histidine kinase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 24353 25459 . - . ID=gene23;Name=RD04_RS00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00120;old_locus_tag=RD04_00120 NZ_CP010961.1 Protein Homology CDS 24353 25459 . - 0 ID=cds19;Parent=gene23;Dbxref=Genbank:WP_010929576.1;Name=WP_010929576.1;gbkey=CDS;product=peptidoglycan-binding protein;protein_id=WP_010929576.1;transl_table=11 NZ_CP010961.1 RefSeq gene 25477 26201 . - . ID=gene24;Name=RD04_RS00125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00125;old_locus_tag=RD04_00125;pseudo=true NZ_CP010961.1 Protein Homology CDS 25477 26201 . - 0 ID=cds20;Parent=gene24;Note=frameshifted;gbkey=CDS;product=DNA-binding response regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 26576 27286 . + . ID=gene25;Name=RD04_RS00130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00130;old_locus_tag=RD04_00130 NZ_CP010961.1 Protein Homology CDS 26576 27286 . + 0 ID=cds21;Parent=gene25;Dbxref=Genbank:WP_023852856.1;Name=WP_023852856.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_023852856.1;transl_table=11 NZ_CP010961.1 RefSeq gene 27283 28185 . - . ID=gene26;Name=RD04_RS00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00135;old_locus_tag=RD04_00135 NZ_CP010961.1 GeneMarkS+ CDS 27283 28185 . - 0 ID=cds22;Parent=gene26;Dbxref=Genbank:WP_041337063.1;Name=WP_041337063.1;gbkey=CDS;product=integrase;protein_id=WP_041337063.1;transl_table=11 NZ_CP010961.1 RefSeq gene 28315 28614 . - . ID=gene27;Name=RD04_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00140;old_locus_tag=RD04_00140 NZ_CP010961.1 GeneMarkS+ CDS 28315 28614 . - 0 ID=cds23;Parent=gene27;Dbxref=Genbank:WP_019248499.1;Name=WP_019248499.1;gbkey=CDS;product=CoA transferase;protein_id=WP_019248499.1;transl_table=11 NZ_CP010961.1 RefSeq gene 28675 29109 . - . ID=gene28;Name=RD04_RS00145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00145;old_locus_tag=RD04_00145 NZ_CP010961.1 Protein Homology CDS 28675 29109 . - 0 ID=cds24;Parent=gene28;Dbxref=Genbank:WP_010929578.1;Name=WP_010929578.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929578.1;transl_table=11 NZ_CP010961.1 RefSeq gene 29142 30359 . - . ID=gene29;Name=RD04_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00150;old_locus_tag=RD04_00150 NZ_CP010961.1 Protein Homology CDS 29142 30359 . - 0 ID=cds25;Parent=gene29;Dbxref=Genbank:WP_019247164.1;Name=WP_019247164.1;gbkey=CDS;product=thiolase;protein_id=WP_019247164.1;transl_table=11 NZ_CP010961.1 RefSeq gene 30365 30862 . - . ID=gene30;Name=RD04_RS00155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00155;old_locus_tag=RD04_00155 NZ_CP010961.1 Protein Homology CDS 30365 30862 . - 0 ID=cds26;Parent=gene30;Dbxref=Genbank:WP_010929580.1;Name=WP_010929580.1;gbkey=CDS;product=MaoC family dehydratase;protein_id=WP_010929580.1;transl_table=11 NZ_CP010961.1 RefSeq gene 31070 32005 . - . ID=gene31;Name=RD04_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00160;old_locus_tag=RD04_00160 NZ_CP010961.1 Protein Homology CDS 31070 32005 . - 0 ID=cds27;Parent=gene31;Dbxref=Genbank:WP_019247165.1;Name=WP_019247165.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_019247165.1;transl_table=11 NZ_CP010961.1 RefSeq gene 32215 33006 . + . ID=gene32;Name=RD04_RS00165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00165;old_locus_tag=RD04_00165 NZ_CP010961.1 Protein Homology CDS 32215 33006 . + 0 ID=cds28;Parent=gene32;Dbxref=Genbank:WP_010929582.1;Name=WP_010929582.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010929582.1;transl_table=11 NZ_CP010961.1 RefSeq gene 33049 34470 . + . ID=gene33;Name=RD04_RS00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00170;old_locus_tag=RD04_00170 NZ_CP010961.1 Protein Homology CDS 33049 34470 . + 0 ID=cds29;Parent=gene33;Dbxref=Genbank:WP_010929583.1;Name=WP_010929583.1;gbkey=CDS;product=2-methylcitrate dehydratase;protein_id=WP_010929583.1;transl_table=11 NZ_CP010961.1 RefSeq gene 34674 35576 . + . ID=gene34;Name=RD04_RS00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00175;old_locus_tag=RD04_00175 NZ_CP010961.1 GeneMarkS+ CDS 34674 35576 . + 0 ID=cds30;Parent=gene34;Dbxref=Genbank:WP_039250369.1;Name=WP_039250369.1;gbkey=CDS;product=integrase;protein_id=WP_039250369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 35675 36625 . + . ID=gene35;Name=RD04_RS00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00180;old_locus_tag=RD04_00180 NZ_CP010961.1 Protein Homology CDS 35675 36625 . + 0 ID=cds31;Parent=gene35;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 36622 37812 . - . ID=gene36;Name=RD04_RS00185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00185;old_locus_tag=RD04_00185 NZ_CP010961.1 Protein Homology CDS 36622 37812 . - 0 ID=cds32;Parent=gene36;Dbxref=Genbank:WP_003814398.1;Name=WP_003814398.1;gbkey=CDS;product=transporter;protein_id=WP_003814398.1;transl_table=11 NZ_CP010961.1 RefSeq gene 38062 38973 . + . ID=gene37;Name=RD04_RS00190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00190;old_locus_tag=RD04_00190 NZ_CP010961.1 Protein Homology CDS 38062 38973 . + 0 ID=cds33;Parent=gene37;Dbxref=Genbank:WP_010929585.1;Name=WP_010929585.1;gbkey=CDS;product=glycine--tRNA ligase subunit alpha;protein_id=WP_010929585.1;transl_table=11 NZ_CP010961.1 RefSeq gene 38975 41113 . + . ID=gene38;Name=RD04_RS00195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00195;old_locus_tag=RD04_00195 NZ_CP010961.1 Protein Homology CDS 38975 41113 . + 0 ID=cds34;Parent=gene38;Dbxref=Genbank:WP_010929586.1;Name=WP_010929586.1;gbkey=CDS;product=glycine--tRNA ligase subunit beta;protein_id=WP_010929586.1;transl_table=11 NZ_CP010961.1 RefSeq gene 41110 41649 . + . ID=gene39;Name=RD04_RS00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00200;old_locus_tag=RD04_00200 NZ_CP010961.1 Protein Homology CDS 41110 41649 . + 0 ID=cds35;Parent=gene39;Dbxref=Genbank:WP_003814404.1;Name=WP_003814404.1;gbkey=CDS;product=D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate 7-phosphatase;protein_id=WP_003814404.1;transl_table=11 NZ_CP010961.1 RefSeq gene 41653 42381 . + . ID=gene40;Name=RD04_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00205;old_locus_tag=RD04_00205 NZ_CP010961.1 Protein Homology CDS 41653 42381 . + 0 ID=cds36;Parent=gene40;Dbxref=Genbank:WP_003814405.1;Name=WP_003814405.1;gbkey=CDS;product=acyltransferase;protein_id=WP_003814405.1;transl_table=11 NZ_CP010961.1 RefSeq gene 42368 43261 . + . ID=gene41;Name=RD04_RS00210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00210;old_locus_tag=RD04_00210 NZ_CP010961.1 Protein Homology CDS 42368 43261 . + 0 ID=cds37;Parent=gene41;Dbxref=Genbank:WP_010929587.1;Name=WP_010929587.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929587.1;transl_table=11 NZ_CP010961.1 RefSeq gene 43332 43727 . + . ID=gene42;Name=RD04_RS00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00215;old_locus_tag=RD04_00215 NZ_CP010961.1 Protein Homology CDS 43332 43727 . + 0 ID=cds38;Parent=gene42;Dbxref=Genbank:WP_019247766.1;Name=WP_019247766.1;Note=Ni-dependent%3B catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione;gbkey=CDS;product=lactoylglutathione lyase;protein_id=WP_019247766.1;transl_table=11 NZ_CP010961.1 RefSeq gene 43737 44267 . + . ID=gene43;Name=RD04_RS00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00220;old_locus_tag=RD04_00220 NZ_CP010961.1 Protein Homology CDS 43737 44267 . + 0 ID=cds39;Parent=gene43;Dbxref=Genbank:WP_003814412.1;Name=WP_003814412.1;Note=cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins%3B binds iron(2+);gbkey=CDS;product=peptide deformylase;protein_id=WP_003814412.1;transl_table=11 NZ_CP010961.1 RefSeq gene 44396 44575 . - . ID=gene44;Name=RD04_RS00225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00225;old_locus_tag=RD04_00225 NZ_CP010961.1 GeneMarkS+ CDS 44396 44575 . - 0 ID=cds40;Parent=gene44;Dbxref=Genbank:WP_023995069.1;Name=WP_023995069.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023995069.1;transl_table=11 NZ_CP010961.1 RefSeq gene 44713 45663 . + . ID=gene45;Name=RD04_RS00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00230;old_locus_tag=RD04_00230 NZ_CP010961.1 Protein Homology CDS 44713 45663 . + 0 ID=cds41;Parent=gene45;Dbxref=Genbank:WP_010929588.1;Name=WP_010929588.1;gbkey=CDS;product=transposase;protein_id=WP_010929588.1;transl_table=11 NZ_CP010961.1 RefSeq gene 45660 46211 . - . ID=gene46;Name=RD04_RS00235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00235;old_locus_tag=RD04_00235;partial=true;pseudo=true;start_range=.,45660 NZ_CP010961.1 Protein Homology CDS 45660 46211 . - 0 ID=cds42;Parent=gene46;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,45660;transl_table=11 NZ_CP010961.1 RefSeq gene 46273 46797 . + . ID=gene47;Name=RD04_RS00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00240;old_locus_tag=RD04_00240 NZ_CP010961.1 Protein Homology CDS 46273 46797 . + 0 ID=cds43;Parent=gene47;Dbxref=Genbank:WP_047122798.1;Name=WP_047122798.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_047122798.1;transl_table=11 NZ_CP010961.1 RefSeq gene 46769 47005 . - . ID=gene48;Name=RD04_RS00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00245;old_locus_tag=RD04_00245 NZ_CP010961.1 Protein Homology CDS 46769 47005 . - 0 ID=cds44;Parent=gene48;Dbxref=Genbank:WP_003815265.1;Name=WP_003815265.1;gbkey=CDS;product=helix-turn-helix transcriptional regulator;protein_id=WP_003815265.1;transl_table=11 NZ_CP010961.1 RefSeq gene 47133 48026 . + . ID=gene49;Name=RD04_RS00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00250;old_locus_tag=RD04_00250 NZ_CP010961.1 Protein Homology CDS 47133 48026 . + 0 ID=cds45;Parent=gene49;Dbxref=Genbank:WP_003815255.1;Name=WP_003815255.1;gbkey=CDS;product=membrane protein;protein_id=WP_003815255.1;transl_table=11 NZ_CP010961.1 RefSeq gene 48030 49032 . - . ID=gene50;Name=RD04_RS00255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00255;old_locus_tag=RD04_00255;pseudo=true NZ_CP010961.1 Protein Homology CDS 48030 49032 . - 0 ID=cds46;Parent=gene50;Note=frameshifted;gbkey=CDS;product=lactate dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 cmsearch binding_site 49126 49206 . + . ID=id5;Dbxref=RFAM:RF00521;Note=SAM riboswitch;gbkey=misc_binding NZ_CP010961.1 RefSeq gene 49196 50443 . + . ID=gene51;Name=metX;gbkey=Gene;gene=metX;gene_biotype=protein_coding;locus_tag=RD04_RS00260;old_locus_tag=RD04_00260 NZ_CP010961.1 Protein Homology CDS 49196 50443 . + 0 ID=cds47;Parent=gene51;Dbxref=Genbank:WP_010929590.1;Name=WP_010929590.1;Note=Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine;gbkey=CDS;gene=metX;product=homoserine O-acetyltransferase;protein_id=WP_010929590.1;transl_table=11 NZ_CP010961.1 RefSeq gene 50440 51054 . + . ID=gene52;Name=RD04_RS00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00265;old_locus_tag=RD04_00265 NZ_CP010961.1 Protein Homology CDS 50440 51054 . + 0 ID=cds48;Parent=gene52;Dbxref=Genbank:WP_003817748.1;Name=WP_003817748.1;gbkey=CDS;product=methionine biosynthesis protein MetW;protein_id=WP_003817748.1;transl_table=11 NZ_CP010961.1 RefSeq gene 51238 52140 . + . ID=gene53;Name=RD04_RS00270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00270;old_locus_tag=RD04_00270 NZ_CP010961.1 GeneMarkS+ CDS 51238 52140 . + 0 ID=cds49;Parent=gene53;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 52183 53439 . + . ID=gene54;Name=ampG;gbkey=Gene;gene=ampG;gene_biotype=protein_coding;locus_tag=RD04_RS00275;old_locus_tag=RD04_00275 NZ_CP010961.1 Protein Homology CDS 52183 53439 . + 0 ID=cds50;Parent=gene54;Dbxref=Genbank:WP_029443813.1;Name=WP_029443813.1;Note=in Escherichia coli this protein is a permease involved in peptidoglycan recycling%3B member of major facilitator superfamily%3B MFS%3B inner membrane protein;gbkey=CDS;gene=ampG;product=muropeptide transporter;protein_id=WP_029443813.1;transl_table=11 NZ_CP010961.1 RefSeq gene 53551 54613 . + . ID=gene55;Name=RD04_RS00280;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00280;old_locus_tag=RD04_00280;pseudo=true NZ_CP010961.1 Protein Homology CDS 53551 54613 . + 0 ID=cds51;Parent=gene55;Note=frameshifted;gbkey=CDS;product=porin;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 54671 55405 . - . ID=gene56;Name=RD04_RS00285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00285;old_locus_tag=RD04_00285 NZ_CP010961.1 Protein Homology CDS 54671 55405 . - 0 ID=cds52;Parent=gene56;Dbxref=Genbank:WP_010929592.1;Name=WP_010929592.1;gbkey=CDS;product=glutamate racemase;protein_id=WP_010929592.1;transl_table=11 NZ_CP010961.1 RefSeq gene 55411 56001 . - . ID=gene57;Name=artP;gbkey=Gene;gene=artP;gene_biotype=protein_coding;locus_tag=RD04_RS00290;old_locus_tag=RD04_00290 NZ_CP010961.1 Protein Homology CDS 55411 56001 . - 0 ID=cds53;Parent=gene57;Dbxref=Genbank:WP_019247224.1;Name=WP_019247224.1;Note=With ArtMQJI transports arginine across the inner membrane;gbkey=CDS;gene=artP;product=glutamate/aspartate ABC transporter ATP-binding protein;protein_id=WP_019247224.1;transl_table=11 NZ_CP010961.1 RefSeq gene 56026 56715 . - . ID=gene58;Name=RD04_RS00295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00295;old_locus_tag=RD04_00295 NZ_CP010961.1 Protein Homology CDS 56026 56715 . - 0 ID=cds54;Parent=gene58;Dbxref=Genbank:WP_003817737.1;Name=WP_003817737.1;Note=with GltJLPS and GadC for glutamate and GltJLP%2C DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate;gbkey=CDS;product=glutamate/aspartate transporter permease GltK;protein_id=WP_003817737.1;transl_table=11 NZ_CP010961.1 RefSeq gene 56712 57473 . - . ID=gene59;Name=RD04_RS00300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00300;old_locus_tag=RD04_00300 NZ_CP010961.1 Protein Homology CDS 56712 57473 . - 0 ID=cds55;Parent=gene59;Dbxref=Genbank:WP_023852650.1;Name=WP_023852650.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_023852650.1;transl_table=11 NZ_CP010961.1 RefSeq gene 57553 58452 . - . ID=gene60;Name=RD04_RS00305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00305;old_locus_tag=RD04_00305 NZ_CP010961.1 Protein Homology CDS 57553 58452 . - 0 ID=cds56;Parent=gene60;Dbxref=Genbank:WP_010929594.1;Name=WP_010929594.1;gbkey=CDS;product=glutamate/aspartate ABC transporter substrate-binding protein;protein_id=WP_010929594.1;transl_table=11 NZ_CP010961.1 RefSeq gene 58546 59448 . - . ID=gene61;Name=RD04_RS00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00310;old_locus_tag=RD04_00310 NZ_CP010961.1 GeneMarkS+ CDS 58546 59448 . - 0 ID=cds57;Parent=gene61;Dbxref=Genbank:WP_039250369.1;Name=WP_039250369.1;gbkey=CDS;product=integrase;protein_id=WP_039250369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 59571 60150 . + . ID=gene62;Name=RD04_RS00315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00315;old_locus_tag=RD04_00315;partial=true;pseudo=true;start_range=.,59571 NZ_CP010961.1 Protein Homology CDS 59571 60150 . + 0 ID=cds58;Parent=gene62;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=LysR family transcriptional regulator;pseudo=true;start_range=.,59571;transl_table=11 NZ_CP010961.1 RefSeq gene 60297 61523 . - . ID=gene63;Name=RD04_RS00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00320;old_locus_tag=RD04_00320 NZ_CP010961.1 Protein Homology CDS 60297 61523 . - 0 ID=cds59;Parent=gene63;Dbxref=Genbank:WP_010929595.1;Name=WP_010929595.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929595.1;transl_table=11 NZ_CP010961.1 RefSeq gene 61523 61936 . - . ID=gene64;Name=RD04_RS00325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00325;old_locus_tag=RD04_00325 NZ_CP010961.1 Protein Homology CDS 61523 61936 . - 0 ID=cds60;Parent=gene64;Dbxref=Genbank:WP_047122776.1;Name=WP_047122776.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_047122776.1;transl_table=11 NZ_CP010961.1 RefSeq gene 62126 63067 . - . ID=gene65;Name=RD04_RS00330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00330;old_locus_tag=RD04_00330 NZ_CP010961.1 Protein Homology CDS 62126 63067 . - 0 ID=cds61;Parent=gene65;Dbxref=Genbank:WP_010929597.1;Name=WP_010929597.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929597.1;transl_table=11 NZ_CP010961.1 RefSeq gene 63491 64465 . - . ID=gene66;Name=RD04_RS00335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00335 NZ_CP010961.1 Protein Homology CDS 63491 64465 . - 0 ID=cds62;Parent=gene66;Dbxref=Genbank:WP_019248755.1;Name=WP_019248755.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248755.1;transl_table=11 NZ_CP010961.1 RefSeq gene 64522 65103 . - . ID=gene67;Name=RD04_RS00340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00340;old_locus_tag=RD04_00335 NZ_CP010961.1 Protein Homology CDS 64522 65103 . - 0 ID=cds63;Parent=gene67;Dbxref=Genbank:WP_010929599.1;Name=WP_010929599.1;gbkey=CDS;product=protease;protein_id=WP_010929599.1;transl_table=11 NZ_CP010961.1 RefSeq gene 65116 65418 . - . ID=gene68;Name=RD04_RS00345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00345;old_locus_tag=RD04_00340 NZ_CP010961.1 Protein Homology CDS 65116 65418 . - 0 ID=cds64;Parent=gene68;Dbxref=Genbank:WP_010929600.1;Name=WP_010929600.1;gbkey=CDS;product=ferredoxin;protein_id=WP_010929600.1;transl_table=11 NZ_CP010961.1 RefSeq gene 65537 66595 . - . ID=gene69;Name=RD04_RS00350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00350;old_locus_tag=RD04_00345 NZ_CP010961.1 Protein Homology CDS 65537 66595 . - 0 ID=cds65;Parent=gene69;Dbxref=Genbank:WP_029443770.1;Name=WP_029443770.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_029443770.1;transl_table=11 NZ_CP010961.1 RefSeq gene 66630 67901 . - . ID=gene70;Name=RD04_RS00355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00355;old_locus_tag=RD04_00350 NZ_CP010961.1 Protein Homology CDS 66630 67901 . - 0 ID=cds66;Parent=gene70;Dbxref=Genbank:WP_019247832.1;Name=WP_019247832.1;gbkey=CDS;product=membrane protein;protein_id=WP_019247832.1;transl_table=11 NZ_CP010961.1 RefSeq gene 67932 68186 . - . ID=gene71;Name=RD04_RS00360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00360;old_locus_tag=RD04_00355 NZ_CP010961.1 Protein Homology CDS 67932 68186 . - 0 ID=cds67;Parent=gene71;Dbxref=Genbank:WP_019247831.1;Name=WP_019247831.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247831.1;transl_table=11 NZ_CP010961.1 RefSeq gene 68531 69712 . - . ID=gene72;Name=RD04_RS00365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00365;old_locus_tag=RD04_00360 NZ_CP010961.1 Protein Homology CDS 68531 69712 . - 0 ID=cds68;Parent=gene72;Dbxref=Genbank:WP_010929603.1;Name=WP_010929603.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929603.1;transl_table=11 NZ_CP010961.1 RefSeq gene 69733 70035 . - . ID=gene73;Name=RD04_RS00370;end_range=70035,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00370;old_locus_tag=RD04_00365;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 69733 70035 . - 0 ID=cds69;Parent=gene73;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=70035,.;gbkey=CDS;partial=true;product=hydroxylase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 70134 71084 . + . ID=gene74;Name=RD04_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00375;old_locus_tag=RD04_00370 NZ_CP010961.1 Protein Homology CDS 70134 71084 . + 0 ID=cds70;Parent=gene74;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 71178 71492 . + . ID=gene75;Name=RD04_RS00380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00380;old_locus_tag=RD04_00375 NZ_CP010961.1 Protein Homology CDS 71178 71492 . + 0 ID=cds71;Parent=gene75;Dbxref=Genbank:WP_003816713.1;Name=WP_003816713.1;gbkey=CDS;product=transposase;protein_id=WP_003816713.1;transl_table=11 NZ_CP010961.1 RefSeq gene 71489 72304 . + . ID=gene76;Name=RD04_RS00385;end_range=72304,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00385;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 71489 72304 . + 0 ID=cds72;Parent=gene76;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=72304,.;gbkey=CDS;partial=true;product=integrase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 72439 72523 . - . ID=gene77;Name=RD04_RS00390;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS00390;old_locus_tag=RD04_00380 NZ_CP010961.1 tRNAscan-SE tRNA 72439 72523 . - . ID=rna4;Parent=gene77;anticodon=(pos:complement(72487..72489));gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 tRNAscan-SE exon 72439 72523 . - . ID=id6;Parent=rna4;anticodon=(pos:complement(72487..72489));gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 RefSeq gene 72685 74592 . + . ID=gene78;Name=RD04_RS00395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00395;old_locus_tag=RD04_00385 NZ_CP010961.1 Protein Homology CDS 72685 74592 . + 0 ID=cds73;Parent=gene78;Dbxref=Genbank:WP_010929604.1;Name=WP_010929604.1;Note=molecular chaperone;gbkey=CDS;product=molecular chaperone HtpG;protein_id=WP_010929604.1;transl_table=11 NZ_CP010961.1 RefSeq gene 74754 75374 . - . ID=gene79;Name=RD04_RS00400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00400;old_locus_tag=RD04_00390 NZ_CP010961.1 Protein Homology CDS 74754 75374 . - 0 ID=cds74;Parent=gene79;Dbxref=Genbank:WP_010929605.1;Name=WP_010929605.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_010929605.1;transl_table=11 NZ_CP010961.1 RefSeq gene 75406 75987 . - . ID=gene80;Name=RD04_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00405;old_locus_tag=RD04_00395 NZ_CP010961.1 Protein Homology CDS 75406 75987 . - 0 ID=cds75;Parent=gene80;Dbxref=Genbank:WP_003807804.1;Name=WP_003807804.1;gbkey=CDS;product=N-acetyl-anhydromuranmyl-L-alanine amidase;protein_id=WP_003807804.1;transl_table=11 NZ_CP010961.1 RefSeq gene 76076 76327 . - . ID=gene81;Name=RD04_RS00410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00410;old_locus_tag=RD04_00400 NZ_CP010961.1 Protein Homology CDS 76076 76327 . - 0 ID=cds76;Parent=gene81;Dbxref=Genbank:WP_003807805.1;Name=WP_003807805.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003807805.1;transl_table=11 NZ_CP010961.1 RefSeq gene 76329 77171 . - . ID=gene82;Name=RD04_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00415;old_locus_tag=RD04_00405 NZ_CP010961.1 Protein Homology CDS 76329 77171 . - 0 ID=cds77;Parent=gene82;Dbxref=Genbank:WP_010929606.1;Name=WP_010929606.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929606.1;transl_table=11 NZ_CP010961.1 RefSeq gene 77277 78686 . + . ID=gene83;Name=RD04_RS00420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00420;old_locus_tag=RD04_00410 NZ_CP010961.1 Protein Homology CDS 77277 78686 . + 0 ID=cds78;Parent=gene83;Dbxref=Genbank:WP_010929607.1;Name=WP_010929607.1;gbkey=CDS;product=signal recognition particle protein;protein_id=WP_010929607.1;transl_table=11 NZ_CP010961.1 RefSeq gene 78683 79633 . - . ID=gene84;Name=RD04_RS00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00425;old_locus_tag=RD04_00415 NZ_CP010961.1 Protein Homology CDS 78683 79633 . - 0 ID=cds79;Parent=gene84;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 79708 80652 . + . ID=gene85;Name=RD04_RS00430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00430;old_locus_tag=RD04_00420 NZ_CP010961.1 Protein Homology CDS 79708 80652 . + 0 ID=cds80;Parent=gene85;Dbxref=Genbank:WP_041166334.1;Name=WP_041166334.1;gbkey=CDS;product=integrase;protein_id=WP_041166334.1;transl_table=11 NZ_CP010961.1 RefSeq gene 80649 82523 . - . ID=gene86;Name=RD04_RS00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00435;old_locus_tag=RD04_00425 NZ_CP010961.1 Protein Homology CDS 80649 82523 . - 0 ID=cds81;Parent=gene86;Dbxref=Genbank:WP_010929608.1;Name=WP_010929608.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_010929608.1;transl_table=11 NZ_CP010961.1 RefSeq gene 82572 83821 . - . ID=gene87;Name=RD04_RS00440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00440;old_locus_tag=RD04_00430;pseudo=true NZ_CP010961.1 Protein Homology CDS 82572 83821 . - 0 ID=cds82;Parent=gene87;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 83871 84575 . - . ID=gene88;Name=RD04_RS00445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00445;old_locus_tag=RD04_00435 NZ_CP010961.1 Protein Homology CDS 83871 84575 . - 0 ID=cds83;Parent=gene88;Dbxref=Genbank:WP_003807102.1;Name=WP_003807102.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_003807102.1;transl_table=11 NZ_CP010961.1 RefSeq gene 84572 85678 . - . ID=gene89;Name=RD04_RS00450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00450;old_locus_tag=RD04_00440 NZ_CP010961.1 Protein Homology CDS 84572 85678 . - 0 ID=cds84;Parent=gene89;Dbxref=Genbank:WP_003807104.1;Name=WP_003807104.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_003807104.1;transl_table=11 NZ_CP010961.1 RefSeq gene 85940 86533 . - . ID=gene90;Name=RD04_RS00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00455;old_locus_tag=RD04_00445 NZ_CP010961.1 Protein Homology CDS 85940 86533 . - 0 ID=cds85;Parent=gene90;Dbxref=Genbank:WP_010929610.1;Name=WP_010929610.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_010929610.1;transl_table=11 NZ_CP010961.1 RefSeq gene 86530 87717 . - . ID=gene91;Name=RD04_RS00460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00460;old_locus_tag=RD04_00450 NZ_CP010961.1 Protein Homology CDS 86530 87717 . - 0 ID=cds86;Parent=gene91;Dbxref=Genbank:WP_023853419.1;Name=WP_023853419.1;gbkey=CDS;product=spore coat polysaccharide biosynthesis protein SpsC;protein_id=WP_023853419.1;transl_table=11 NZ_CP010961.1 RefSeq gene 87780 89039 . - . ID=gene92;Name=RD04_RS00465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00465;old_locus_tag=RD04_00455 NZ_CP010961.1 Protein Homology CDS 87780 89039 . - 0 ID=cds87;Parent=gene92;Dbxref=Genbank:WP_010929612.1;Name=WP_010929612.1;gbkey=CDS;product=glycosyltransferase WbuB;protein_id=WP_010929612.1;transl_table=11 NZ_CP010961.1 RefSeq gene 89063 90151 . - . ID=gene93;Name=RD04_RS00470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00470;old_locus_tag=RD04_00460 NZ_CP010961.1 Protein Homology CDS 89063 90151 . - 0 ID=cds88;Parent=gene93;Dbxref=Genbank:WP_010929613.1;Name=WP_010929613.1;gbkey=CDS;product=UDP-N-acetyl glucosamine 2-epimerase;protein_id=WP_010929613.1;transl_table=11 NZ_CP010961.1 RefSeq gene 90159 91259 . - . ID=gene94;Name=RD04_RS00475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00475;old_locus_tag=RD04_00465 NZ_CP010961.1 Protein Homology CDS 90159 91259 . - 0 ID=cds89;Parent=gene94;Dbxref=Genbank:WP_010929614.1;Name=WP_010929614.1;gbkey=CDS;product=aminotransferase DegT;protein_id=WP_010929614.1;transl_table=11 NZ_CP010961.1 RefSeq gene 91263 91838 . - . ID=gene95;Name=RD04_RS00480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00480;old_locus_tag=RD04_00470 NZ_CP010961.1 Protein Homology CDS 91263 91838 . - 0 ID=cds90;Parent=gene95;Dbxref=Genbank:WP_003807114.1;Name=WP_003807114.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_003807114.1;transl_table=11 NZ_CP010961.1 RefSeq gene 91842 92894 . - . ID=gene96;Name=RD04_RS00485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00485;old_locus_tag=RD04_00475 NZ_CP010961.1 Protein Homology CDS 91842 92894 . - 0 ID=cds91;Parent=gene96;Dbxref=Genbank:WP_003807115.1;Name=WP_003807115.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_003807115.1;transl_table=11 NZ_CP010961.1 RefSeq gene 93025 94032 . + . ID=gene97;Name=RD04_RS00490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00490;old_locus_tag=RD04_00480 NZ_CP010961.1 Protein Homology CDS 93025 94032 . + 0 ID=cds92;Parent=gene97;Dbxref=Genbank:WP_010929615.1;Name=WP_010929615.1;gbkey=CDS;product=lipopolysaccharide heptosyltransferase I;protein_id=WP_010929615.1;transl_table=11 NZ_CP010961.1 RefSeq gene 94034 95320 . + . ID=gene98;Name=RD04_RS00495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00495;old_locus_tag=RD04_00485 NZ_CP010961.1 Protein Homology CDS 94034 95320 . + 0 ID=cds93;Parent=gene98;Dbxref=Genbank:WP_010929616.1;Name=WP_010929616.1;gbkey=CDS;product=3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_010929616.1;transl_table=11 NZ_CP010961.1 RefSeq gene 95337 95492 . - . ID=gene99;Name=RD04_RS00500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00500;old_locus_tag=RD04_00490 NZ_CP010961.1 Protein Homology CDS 95337 95492 . - 0 ID=cds94;Parent=gene99;Dbxref=Genbank:WP_003807124.1;Name=WP_003807124.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003807124.1;transl_table=11 NZ_CP010961.1 RefSeq gene 95517 96320 . - . ID=gene100;Name=RD04_RS00505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00505;old_locus_tag=RD04_00495 NZ_CP010961.1 Protein Homology CDS 95517 96320 . - 0 ID=cds95;Parent=gene100;Dbxref=Genbank:WP_010929617.1;Name=WP_010929617.1;gbkey=CDS;product=type III pantothenate kinase;protein_id=WP_010929617.1;transl_table=11 NZ_CP010961.1 RefSeq gene 96317 97183 . - . ID=gene101;Name=RD04_RS00510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00510;old_locus_tag=RD04_00500 NZ_CP010961.1 Protein Homology CDS 96317 97183 . - 0 ID=cds96;Parent=gene101;Dbxref=Genbank:WP_010929618.1;Name=WP_010929618.1;gbkey=CDS;product=biotin--[acetyl-CoA-carboxylase] ligase;protein_id=WP_010929618.1;transl_table=11 NZ_CP010961.1 RefSeq gene 97258 98388 . + . ID=gene102;Name=RD04_RS00515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00515;old_locus_tag=RD04_00505 NZ_CP010961.1 Protein Homology CDS 97258 98388 . + 0 ID=cds97;Parent=gene102;Dbxref=Genbank:WP_010929619.1;Name=WP_010929619.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010929619.1;transl_table=11 NZ_CP010961.1 RefSeq gene 98388 99227 . + . ID=gene103;Name=RD04_RS00520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00520;old_locus_tag=RD04_00510 NZ_CP010961.1 Protein Homology CDS 98388 99227 . + 0 ID=cds98;Parent=gene103;Dbxref=Genbank:WP_003807131.1;Name=WP_003807131.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003807131.1;transl_table=11 NZ_CP010961.1 RefSeq gene 99381 99848 . - . ID=gene104;Name=RD04_RS00525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00525;old_locus_tag=RD04_00515 NZ_CP010961.1 Protein Homology CDS 99381 99848 . - 0 ID=cds99;Parent=gene104;Dbxref=Genbank:WP_019247569.1;Name=WP_019247569.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247569.1;transl_table=11 NZ_CP010961.1 RefSeq gene 99938 100159 . + . ID=gene105;Name=RD04_RS00530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00530;old_locus_tag=RD04_00520 NZ_CP010961.1 Protein Homology CDS 99938 100159 . + 0 ID=cds100;Parent=gene105;Dbxref=Genbank:WP_019247568.1;Name=WP_019247568.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247568.1;transl_table=11 NZ_CP010961.1 RefSeq gene 100160 100762 . + . ID=gene106;Name=RD04_RS00535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00535;old_locus_tag=RD04_00525 NZ_CP010961.1 Protein Homology CDS 100160 100762 . + 0 ID=cds101;Parent=gene106;Dbxref=Genbank:WP_010929620.1;Name=WP_010929620.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929620.1;transl_table=11 NZ_CP010961.1 RefSeq gene 100792 101445 . + . ID=gene107;Name=RD04_RS00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00540;old_locus_tag=RD04_00530 NZ_CP010961.1 Protein Homology CDS 100792 101445 . + 0 ID=cds102;Parent=gene107;Dbxref=Genbank:WP_010929621.1;Name=WP_010929621.1;gbkey=CDS;product=alpha/beta hydrolase;protein_id=WP_010929621.1;transl_table=11 NZ_CP010961.1 RefSeq gene 101656 102834 . + . ID=gene108;Name=RD04_RS00545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00545;old_locus_tag=RD04_00535 NZ_CP010961.1 Protein Homology CDS 101656 102834 . + 0 ID=cds103;Parent=gene108;Dbxref=Genbank:WP_033447901.1;Name=WP_033447901.1;gbkey=CDS;product=cytochrome c550;protein_id=WP_033447901.1;transl_table=11 NZ_CP010961.1 RefSeq gene 102915 103781 . + . ID=gene109;Name=RD04_RS00550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00550;old_locus_tag=RD04_00540 NZ_CP010961.1 Protein Homology CDS 102915 103781 . + 0 ID=cds104;Parent=gene109;Dbxref=Genbank:WP_023853421.1;Name=WP_023853421.1;gbkey=CDS;product=D-amino acid aminotransferase;protein_id=WP_023853421.1;transl_table=11 NZ_CP010961.1 RefSeq gene 103857 104132 . + . ID=gene110;Name=RD04_RS00555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00555;old_locus_tag=RD04_00545 NZ_CP010961.1 Protein Homology CDS 103857 104132 . + 0 ID=cds105;Parent=gene110;Dbxref=Genbank:WP_003818417.1;Name=WP_003818417.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003818417.1;transl_table=11 NZ_CP010961.1 RefSeq gene 104140 104802 . + . ID=gene111;Name=RD04_RS00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00560;old_locus_tag=RD04_00550 NZ_CP010961.1 Protein Homology CDS 104140 104802 . + 0 ID=cds106;Parent=gene111;Dbxref=Genbank:WP_010929623.1;Name=WP_010929623.1;Note=lipoyl/octanoyltransferase%3B catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein;gbkey=CDS;product=octanoyltransferase;protein_id=WP_010929623.1;transl_table=11 NZ_CP010961.1 RefSeq gene 104864 105865 . + . ID=gene112;Name=RD04_RS00565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00565;old_locus_tag=RD04_00555 NZ_CP010961.1 Protein Homology CDS 104864 105865 . + 0 ID=cds107;Parent=gene112;Dbxref=Genbank:WP_003807146.1;Name=WP_003807146.1;Note=catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group;gbkey=CDS;product=lipoyl synthase;protein_id=WP_003807146.1;transl_table=11 NZ_CP010961.1 RefSeq gene 105880 106428 . - . ID=gene113;Name=RD04_RS00570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00570;old_locus_tag=RD04_00560 NZ_CP010961.1 Protein Homology CDS 105880 106428 . - 0 ID=cds108;Parent=gene113;Dbxref=Genbank:WP_003807148.1;Name=WP_003807148.1;gbkey=CDS;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=WP_003807148.1;transl_table=11 NZ_CP010961.1 RefSeq gene 106486 107382 . - . ID=gene114;Name=RD04_RS00575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00575;old_locus_tag=RD04_00565 NZ_CP010961.1 Protein Homology CDS 106486 107382 . - 0 ID=cds109;Parent=gene114;Dbxref=Genbank:WP_010929624.1;Name=WP_010929624.1;gbkey=CDS;product=NAD(P)-dependent oxidoreductase;protein_id=WP_010929624.1;transl_table=11 NZ_CP010961.1 RefSeq gene 107379 108440 . - . ID=gene115;Name=RD04_RS00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00580;old_locus_tag=RD04_00570 NZ_CP010961.1 Protein Homology CDS 107379 108440 . - 0 ID=cds110;Parent=gene115;Dbxref=Genbank:WP_010929625.1;Name=WP_010929625.1;gbkey=CDS;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_010929625.1;transl_table=11 NZ_CP010961.1 RefSeq gene 108476 109426 . - . ID=gene116;Name=RD04_RS00585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00585;old_locus_tag=RD04_00575 NZ_CP010961.1 Protein Homology CDS 108476 109426 . - 0 ID=cds111;Parent=gene116;Dbxref=Genbank:WP_010929626.1;Name=WP_010929626.1;gbkey=CDS;product=transposase;protein_id=WP_010929626.1;transl_table=11 NZ_CP010961.1 RefSeq gene 109525 110151 . - . ID=gene117;Name=RD04_RS00590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00590;old_locus_tag=RD04_00580;pseudo=true NZ_CP010961.1 Protein Homology CDS 109525 110151 . - 0 ID=cds112;Parent=gene117;Note=frameshifted;gbkey=CDS;product=threonine transporter RhtB;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 110325 111518 . + . ID=gene118;Name=RD04_RS00595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00595;old_locus_tag=RD04_00585 NZ_CP010961.1 Protein Homology CDS 110325 111518 . + 0 ID=cds113;Parent=gene118;Dbxref=Genbank:WP_010929627.1;Name=WP_010929627.1;gbkey=CDS;product=cystathionine beta-lyase;protein_id=WP_010929627.1;transl_table=11 NZ_CP010961.1 RefSeq gene 111600 112229 . - . ID=gene119;Name=RD04_RS00600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00600;old_locus_tag=RD04_00590 NZ_CP010961.1 Protein Homology CDS 111600 112229 . - 0 ID=cds114;Parent=gene119;Dbxref=Genbank:WP_010929628.1;Name=WP_010929628.1;gbkey=CDS;product=thiol:disulfide interchange protein DsbA;protein_id=WP_010929628.1;transl_table=11 NZ_CP010961.1 RefSeq gene 112291 112974 . - . ID=gene120;Name=RD04_RS00605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00605;old_locus_tag=RD04_00595 NZ_CP010961.1 Protein Homology CDS 112291 112974 . - 0 ID=cds115;Parent=gene120;Dbxref=Genbank:WP_010927242.1;Name=WP_010927242.1;gbkey=CDS;product=cell division protein;protein_id=WP_010927242.1;transl_table=11 NZ_CP010961.1 RefSeq gene 112984 114666 . - . ID=gene121;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=RD04_RS00610;old_locus_tag=RD04_00600 NZ_CP010961.1 Protein Homology CDS 112984 114666 . - 0 ID=cds116;Parent=gene121;Dbxref=Genbank:WP_023853376.1;Name=WP_023853376.1;Note=catalyzes a two-step reaction%2C first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class-I aminoacyl-tRNA synthetase;gbkey=CDS;gene=argS;product=arginine--tRNA ligase;protein_id=WP_023853376.1;transl_table=11 NZ_CP010961.1 RefSeq gene 114954 115301 . + . ID=gene122;Name=RD04_RS00615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00615;old_locus_tag=RD04_00605 NZ_CP010961.1 Protein Homology CDS 114954 115301 . + 0 ID=cds117;Parent=gene122;Dbxref=Genbank:WP_003815933.1;Name=WP_003815933.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815933.1;transl_table=11 NZ_CP010961.1 RefSeq gene 115392 115709 . + . ID=gene123;Name=RD04_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00620;old_locus_tag=RD04_00610 NZ_CP010961.1 Protein Homology CDS 115392 115709 . + 0 ID=cds118;Parent=gene123;Dbxref=Genbank:WP_003815930.1;Name=WP_003815930.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815930.1;transl_table=11 NZ_CP010961.1 RefSeq gene 115992 117008 . + . ID=gene124;Name=RD04_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00625;old_locus_tag=RD04_00615 NZ_CP010961.1 Protein Homology CDS 115992 117008 . + 0 ID=cds119;Parent=gene124;Dbxref=Genbank:WP_010931363.1;Name=WP_010931363.1;gbkey=CDS;product=transposase;protein_id=WP_010931363.1;transl_table=11 NZ_CP010961.1 RefSeq gene 117083 117883 . - . ID=gene125;Name=RD04_RS00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00630;old_locus_tag=RD04_00620 NZ_CP010961.1 Protein Homology CDS 117083 117883 . - 0 ID=cds120;Parent=gene125;Dbxref=Genbank:WP_003815929.1;Name=WP_003815929.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003815929.1;transl_table=11 NZ_CP010961.1 RefSeq gene 117880 118755 . - . ID=gene126;Name=RD04_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00635;old_locus_tag=RD04_00625 NZ_CP010961.1 Protein Homology CDS 117880 118755 . - 0 ID=cds121;Parent=gene126;Dbxref=Genbank:WP_003815927.1;Name=WP_003815927.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003815927.1;transl_table=11 NZ_CP010961.1 RefSeq gene 118766 120058 . - . ID=gene127;Name=RD04_RS00640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00640;old_locus_tag=RD04_00630 NZ_CP010961.1 Protein Homology CDS 118766 120058 . - 0 ID=cds122;Parent=gene127;Dbxref=Genbank:WP_010929633.1;Name=WP_010929633.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010929633.1;transl_table=11 NZ_CP010961.1 RefSeq gene 120101 121141 . - . ID=gene128;Name=RD04_RS00645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00645;old_locus_tag=RD04_00635 NZ_CP010961.1 Protein Homology CDS 120101 121141 . - 0 ID=cds123;Parent=gene128;Dbxref=Genbank:WP_010929634.1;Name=WP_010929634.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_010929634.1;transl_table=11 NZ_CP010961.1 RefSeq gene 121247 122068 . - . ID=gene129;Name=RD04_RS00650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00650;old_locus_tag=RD04_00640 NZ_CP010961.1 Protein Homology CDS 121247 122068 . - 0 ID=cds124;Parent=gene129;Dbxref=Genbank:WP_010929635.1;Name=WP_010929635.1;gbkey=CDS;product=phosphodiesterase;protein_id=WP_010929635.1;transl_table=11 NZ_CP010961.1 RefSeq gene 122169 123119 . - . ID=gene130;Name=RD04_RS00655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00655;old_locus_tag=RD04_00645 NZ_CP010961.1 Protein Homology CDS 122169 123119 . - 0 ID=cds125;Parent=gene130;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 123218 124123 . - . ID=gene131;Name=RD04_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00660;old_locus_tag=RD04_00650 NZ_CP010961.1 Protein Homology CDS 123218 124123 . - 0 ID=cds126;Parent=gene131;Dbxref=Genbank:WP_014905488.1;Name=WP_014905488.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_014905488.1;transl_table=11 NZ_CP010961.1 RefSeq gene 124120 124944 . - . ID=gene132;Name=RD04_RS00665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00665;old_locus_tag=RD04_00655 NZ_CP010961.1 Protein Homology CDS 124120 124944 . - 0 ID=cds127;Parent=gene132;Dbxref=Genbank:WP_042145426.1;Name=WP_042145426.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_042145426.1;transl_table=11 NZ_CP010961.1 RefSeq gene 124965 125788 . - . ID=gene133;Name=RD04_RS00670;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00670;old_locus_tag=RD04_00660;pseudo=true NZ_CP010961.1 Protein Homology CDS 124965 125788 . - 0 ID=cds128;Parent=gene133;Note=frameshifted;gbkey=CDS;product=ABC transporter permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 125790 126800 . - . ID=gene134;Name=RD04_RS00675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00675;old_locus_tag=RD04_00665 NZ_CP010961.1 Protein Homology CDS 125790 126800 . - 0 ID=cds129;Parent=gene134;Dbxref=Genbank:WP_010929637.1;Name=WP_010929637.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010929637.1;transl_table=11 NZ_CP010961.1 RefSeq gene 126797 127186 . - . ID=gene135;Name=RD04_RS00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00680;old_locus_tag=RD04_00670 NZ_CP010961.1 Protein Homology CDS 126797 127186 . - 0 ID=cds130;Parent=gene135;Dbxref=Genbank:WP_019247800.1;Name=WP_019247800.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247800.1;transl_table=11 NZ_CP010961.1 RefSeq gene 127170 127781 . + . ID=gene136;Name=RD04_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00685;old_locus_tag=RD04_00675 NZ_CP010961.1 Protein Homology CDS 127170 127781 . + 0 ID=cds131;Parent=gene136;Dbxref=Genbank:WP_019247801.1;Name=WP_019247801.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247801.1;transl_table=11 NZ_CP010961.1 RefSeq gene 128068 129333 . + . ID=gene137;Name=RD04_RS00690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00690;old_locus_tag=RD04_00680 NZ_CP010961.1 Protein Homology CDS 128068 129333 . + 0 ID=cds132;Parent=gene137;Dbxref=Genbank:WP_033446324.1;Name=WP_033446324.1;gbkey=CDS;product=amidase;protein_id=WP_033446324.1;transl_table=11 NZ_CP010961.1 RefSeq gene 129424 131124 . - . ID=gene138;Name=RD04_RS00695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00695;old_locus_tag=RD04_00685 NZ_CP010961.1 Protein Homology CDS 129424 131124 . - 0 ID=cds133;Parent=gene138;Dbxref=Genbank:WP_010929639.1;Name=WP_010929639.1;gbkey=CDS;product=2-isopropylmalate synthase;protein_id=WP_010929639.1;transl_table=11 NZ_CP010961.1 RefSeq gene 131551 132198 . - . ID=gene139;Name=RD04_RS00700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00700;old_locus_tag=RD04_00690 NZ_CP010961.1 Protein Homology CDS 131551 132198 . - 0 ID=cds134;Parent=gene139;Dbxref=Genbank:WP_010929640.1;Name=WP_010929640.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929640.1;transl_table=11 NZ_CP010961.1 RefSeq gene 132197 133636 . + . ID=gene140;Name=RD04_RS00705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00705;old_locus_tag=RD04_00695 NZ_CP010961.1 Protein Homology CDS 132197 133636 . + 0 ID=cds135;Parent=gene140;Dbxref=Genbank:WP_023853393.1;Name=WP_023853393.1;gbkey=CDS;product=RNA polymerase sigma-54 factor;protein_id=WP_023853393.1;transl_table=11 NZ_CP010961.1 RefSeq gene 133747 134031 . + . ID=gene141;Name=RD04_RS00710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00710;old_locus_tag=RD04_00700 NZ_CP010961.1 Protein Homology CDS 133747 134031 . + 0 ID=cds136;Parent=gene141;Dbxref=Genbank:WP_023853394.1;Name=WP_023853394.1;gbkey=CDS;product=(2Fe-2S)-binding protein;protein_id=WP_023853394.1;transl_table=11 NZ_CP010961.1 RefSeq gene 134059 134937 . - . ID=gene142;Name=RD04_RS00715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00715;old_locus_tag=RD04_00705 NZ_CP010961.1 Protein Homology CDS 134059 134937 . - 0 ID=cds137;Parent=gene142;Dbxref=Genbank:WP_010929512.1;Name=WP_010929512.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010929512.1;transl_table=11 NZ_CP010961.1 RefSeq gene 135045 135973 . + . ID=gene143;Name=RD04_RS00720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00720;old_locus_tag=RD04_00710;pseudo=true NZ_CP010961.1 Protein Homology CDS 135045 135973 . + 0 ID=cds138;Parent=gene143;Note=frameshifted;gbkey=CDS;product=multidrug DMT transporter permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 136204 137154 . - . ID=gene144;Name=RD04_RS00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00725;old_locus_tag=RD04_00715 NZ_CP010961.1 Protein Homology CDS 136204 137154 . - 0 ID=cds139;Parent=gene144;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 137283 137525 . + . ID=gene145;Name=RD04_RS00730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00730;old_locus_tag=RD04_00720 NZ_CP010961.1 GeneMarkS+ CDS 137283 137525 . + 0 ID=cds140;Parent=gene145;Dbxref=Genbank:WP_024000096.1;Name=WP_024000096.1;gbkey=CDS;product=porin;protein_id=WP_024000096.1;transl_table=11 NZ_CP010961.1 RefSeq gene 137573 139081 . - . ID=gene146;Name=RD04_RS00735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00735;old_locus_tag=RD04_00725 NZ_CP010961.1 Protein Homology CDS 137573 139081 . - 0 ID=cds141;Parent=gene146;Dbxref=Genbank:WP_003815155.1;Name=WP_003815155.1;Note=threonine deaminase%3B threonine dehydratase%3B in Escherichia coli%2C IlvA is part of the isoleucine biosynthetic pathway;gbkey=CDS;product=PLP-dependent threonine dehydratase;protein_id=WP_003815155.1;transl_table=11 NZ_CP010961.1 RefSeq gene 139168 139704 . + . ID=gene147;Name=RD04_RS00740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00740;old_locus_tag=RD04_00730;pseudo=true NZ_CP010961.1 Protein Homology CDS 139168 139704 . + 0 ID=cds142;Parent=gene147;Note=internal stop;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 139828 143790 . + . ID=gene148;Name=RD04_RS00745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00745;old_locus_tag=RD04_00735 NZ_CP010961.1 Protein Homology CDS 139828 143790 . + 0 ID=cds143;Parent=gene148;Dbxref=Genbank:WP_019247146.1;Name=WP_019247146.1;gbkey=CDS;product=FAD-linked oxidase;protein_id=WP_019247146.1;transl_table=11 NZ_CP010961.1 RefSeq gene 143843 144625 . + . ID=gene149;Name=RD04_RS00750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00750;old_locus_tag=RD04_00740 NZ_CP010961.1 Protein Homology CDS 143843 144625 . + 0 ID=cds144;Parent=gene149;Dbxref=Genbank:WP_010929644.1;Name=WP_010929644.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010929644.1;transl_table=11 NZ_CP010961.1 RefSeq gene 144713 145936 . - . ID=gene150;Name=RD04_RS00755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00755;old_locus_tag=RD04_00745 NZ_CP010961.1 Protein Homology CDS 144713 145936 . - 0 ID=cds145;Parent=gene150;Dbxref=Genbank:WP_010929645.1;Name=WP_010929645.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010929645.1;transl_table=11 NZ_CP010961.1 RefSeq gene 145920 146852 . - . ID=gene151;Name=RD04_RS00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00760;old_locus_tag=RD04_00750 NZ_CP010961.1 Protein Homology CDS 145920 146852 . - 0 ID=cds146;Parent=gene151;Dbxref=Genbank:WP_010929646.1;Name=WP_010929646.1;gbkey=CDS;product=lipase;protein_id=WP_010929646.1;transl_table=11 NZ_CP010961.1 RefSeq gene 146858 147670 . - . ID=gene152;Name=RD04_RS00765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00765;old_locus_tag=RD04_00755 NZ_CP010961.1 Protein Homology CDS 146858 147670 . - 0 ID=cds147;Parent=gene152;Dbxref=Genbank:WP_003817676.1;Name=WP_003817676.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=3-hydroxypropionyl-CoA dehydratase;protein_id=WP_003817676.1;transl_table=11 NZ_CP010961.1 RefSeq gene 147691 148134 . - . ID=gene153;Name=RD04_RS00770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00770;old_locus_tag=RD04_00760 NZ_CP010961.1 Protein Homology CDS 147691 148134 . - 0 ID=cds148;Parent=gene153;Dbxref=Genbank:WP_019247546.1;Name=WP_019247546.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247546.1;transl_table=11 NZ_CP010961.1 RefSeq gene 148153 148911 . - . ID=gene154;Name=RD04_RS00775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00775;old_locus_tag=RD04_00765 NZ_CP010961.1 Protein Homology CDS 148153 148911 . - 0 ID=cds149;Parent=gene154;Dbxref=Genbank:WP_019247545.1;Name=WP_019247545.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247545.1;transl_table=11 NZ_CP010961.1 RefSeq gene 148981 149952 . - . ID=gene155;Name=RD04_RS00780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00780;old_locus_tag=RD04_00770 NZ_CP010961.1 Protein Homology CDS 148981 149952 . - 0 ID=cds150;Parent=gene155;Dbxref=Genbank:WP_010929647.1;Name=WP_010929647.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929647.1;transl_table=11 NZ_CP010961.1 RefSeq gene 150071 150853 . + . ID=gene156;Name=RD04_RS00785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00785;old_locus_tag=RD04_00775 NZ_CP010961.1 Protein Homology CDS 150071 150853 . + 0 ID=cds151;Parent=gene156;Dbxref=Genbank:WP_003815135.1;Name=WP_003815135.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003815135.1;transl_table=11 NZ_CP010961.1 RefSeq gene 150864 151623 . - . ID=gene157;Name=RD04_RS00790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00790;old_locus_tag=RD04_00780;pseudo=true NZ_CP010961.1 Protein Homology CDS 150864 151623 . - 0 ID=cds152;Parent=gene157;Note=frameshifted;gbkey=CDS;product=lactam utilization protein LamB;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 151620 152600 . - . ID=gene158;Name=RD04_RS00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00795;old_locus_tag=RD04_00785 NZ_CP010961.1 Protein Homology CDS 151620 152600 . - 0 ID=cds153;Parent=gene158;Dbxref=Genbank:WP_010929648.1;Name=WP_010929648.1;gbkey=CDS;product=carboxylase;protein_id=WP_010929648.1;transl_table=11 NZ_CP010961.1 RefSeq gene 152597 153325 . - . ID=gene159;Name=RD04_RS00800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00800;old_locus_tag=RD04_00790 NZ_CP010961.1 Protein Homology CDS 152597 153325 . - 0 ID=cds154;Parent=gene159;Dbxref=Genbank:WP_010929649.1;Name=WP_010929649.1;gbkey=CDS;product=allophanate hydrolase;protein_id=WP_010929649.1;transl_table=11 NZ_CP010961.1 RefSeq gene 153350 153781 . - . ID=gene160;Name=RD04_RS00805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00805;old_locus_tag=RD04_00795 NZ_CP010961.1 Protein Homology CDS 153350 153781 . - 0 ID=cds155;Parent=gene160;Dbxref=Genbank:WP_003815126.1;Name=WP_003815126.1;gbkey=CDS;product=glyoxalase;protein_id=WP_003815126.1;transl_table=11 NZ_CP010961.1 RefSeq gene 153883 154758 . + . ID=gene161;Name=RD04_RS00810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00810;old_locus_tag=RD04_00800 NZ_CP010961.1 Protein Homology CDS 153883 154758 . + 0 ID=cds156;Parent=gene161;Dbxref=Genbank:WP_010929650.1;Name=WP_010929650.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010929650.1;transl_table=11 NZ_CP010961.1 RefSeq gene 154810 156009 . - . ID=gene162;Name=RD04_RS00815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00815;old_locus_tag=RD04_00805 NZ_CP010961.1 Protein Homology CDS 154810 156009 . - 0 ID=cds157;Parent=gene162;Dbxref=Genbank:WP_023853237.1;Name=WP_023853237.1;Note=catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis%3B can also reduce alpha ketoglutarate to form 2-hydroxyglutarate;gbkey=CDS;product=D-3-phosphoglycerate dehydrogenase;protein_id=WP_023853237.1;transl_table=11 NZ_CP010961.1 RefSeq gene 156113 156574 . - . ID=gene163;Name=RD04_RS00820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00820;old_locus_tag=RD04_00810 NZ_CP010961.1 Protein Homology CDS 156113 156574 . - 0 ID=cds158;Parent=gene163;Dbxref=Genbank:WP_010929652.1;Name=WP_010929652.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929652.1;transl_table=11 NZ_CP010961.1 RefSeq gene 156680 158077 . - . ID=gene164;Name=RD04_RS00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00825;old_locus_tag=RD04_00815 NZ_CP010961.1 Protein Homology CDS 156680 158077 . - 0 ID=cds159;Parent=gene164;Dbxref=Genbank:WP_010929653.1;Name=WP_010929653.1;gbkey=CDS;product=two-component sensor histidine kinase;protein_id=WP_010929653.1;transl_table=11 NZ_CP010961.1 RefSeq gene 158074 158751 . - . ID=gene165;Name=RD04_RS00830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00830;old_locus_tag=RD04_00820 NZ_CP010961.1 Protein Homology CDS 158074 158751 . - 0 ID=cds160;Parent=gene165;Dbxref=Genbank:WP_010929654.1;Name=WP_010929654.1;Note=response regulator in two-component regulatory system with CusS%3B regulates the copper efflux system;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_010929654.1;transl_table=11 NZ_CP010961.1 RefSeq gene 158807 160117 . - . ID=gene166;Name=RD04_RS00835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00835;old_locus_tag=RD04_00825 NZ_CP010961.1 Protein Homology CDS 158807 160117 . - 0 ID=cds161;Parent=gene166;Dbxref=Genbank:WP_010929655.1;Name=WP_010929655.1;gbkey=CDS;product=histidine kinase;protein_id=WP_010929655.1;transl_table=11 NZ_CP010961.1 RefSeq gene 160129 160827 . - . ID=gene167;Name=RD04_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00840;old_locus_tag=RD04_00830 NZ_CP010961.1 Protein Homology CDS 160129 160827 . - 0 ID=cds162;Parent=gene167;Dbxref=Genbank:WP_003815113.1;Name=WP_003815113.1;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_003815113.1;transl_table=11 NZ_CP010961.1 RefSeq gene 160991 161767 . + . ID=gene168;Name=RD04_RS00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00845;old_locus_tag=RD04_00835 NZ_CP010961.1 Protein Homology CDS 160991 161767 . + 0 ID=cds163;Parent=gene168;Dbxref=Genbank:WP_003815111.1;Name=WP_003815111.1;gbkey=CDS;product=ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE;protein_id=WP_003815111.1;transl_table=11 NZ_CP010961.1 RefSeq gene 161933 162955 . + . ID=gene169;Name=RD04_RS00850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00850;old_locus_tag=RD04_00840 NZ_CP010961.1 Protein Homology CDS 161933 162955 . + 0 ID=cds164;Parent=gene169;Dbxref=Genbank:WP_010929656.1;Name=WP_010929656.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929656.1;transl_table=11 NZ_CP010961.1 RefSeq gene 163184 163819 . + . ID=gene170;Name=RD04_RS00855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00855;old_locus_tag=RD04_00845 NZ_CP010961.1 Protein Homology CDS 163184 163819 . + 0 ID=cds165;Parent=gene170;Dbxref=Genbank:WP_023853232.1;Name=WP_023853232.1;gbkey=CDS;product=SCP-2 sterol transfer family protein;protein_id=WP_023853232.1;transl_table=11 NZ_CP010961.1 RefSeq gene 163825 165378 . + . ID=gene171;Name=RD04_RS00860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00860;old_locus_tag=RD04_00850 NZ_CP010961.1 Protein Homology CDS 163825 165378 . + 0 ID=cds166;Parent=gene171;Dbxref=Genbank:WP_023995348.1;Name=WP_023995348.1;gbkey=CDS;product=ubiquinone biosynthesis protein UbiB;protein_id=WP_023995348.1;transl_table=11 NZ_CP010961.1 RefSeq gene 165553 165942 . + . ID=gene172;Name=RD04_RS00865;end_range=165942,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00865;old_locus_tag=RD04_00855;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 165553 165942 . + 0 ID=cds167;Parent=gene172;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=165942,.;gbkey=CDS;partial=true;product=ferritin;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 165937 166887 . - . ID=gene173;Name=RD04_RS00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00870;old_locus_tag=RD04_00860 NZ_CP010961.1 Protein Homology CDS 165937 166887 . - 0 ID=cds168;Parent=gene173;Dbxref=Genbank:WP_005015810.1;Name=WP_005015810.1;gbkey=CDS;product=transposase;protein_id=WP_005015810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 166990 168324 . + . ID=gene174;Name=RD04_RS00875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00875;old_locus_tag=RD04_00865;partial=true;pseudo=true;start_range=.,166990 NZ_CP010961.1 Protein Homology CDS 166990 168324 . + 0 ID=cds169;Parent=gene174;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=ABC transporter ATP-binding protein;pseudo=true;start_range=.,166990;transl_table=11 NZ_CP010961.1 RefSeq gene 168331 169232 . - . ID=gene175;Name=RD04_RS00880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00880;old_locus_tag=RD04_00870;pseudo=true NZ_CP010961.1 Protein Homology CDS 168331 169232 . - 0 ID=cds170;Parent=gene175;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 169210 169839 . - . ID=gene176;Name=RD04_RS00885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00885;old_locus_tag=RD04_00875 NZ_CP010961.1 Protein Homology CDS 169210 169839 . - 0 ID=cds171;Parent=gene176;Dbxref=Genbank:WP_003815889.1;Name=WP_003815889.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815889.1;transl_table=11 NZ_CP010961.1 RefSeq gene 170122 171552 . + . ID=gene177;Name=RD04_RS00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00890;old_locus_tag=RD04_00880 NZ_CP010961.1 Protein Homology CDS 170122 171552 . + 0 ID=cds172;Parent=gene177;Dbxref=Genbank:WP_010929660.1;Name=WP_010929660.1;gbkey=CDS;product=RNA helicase;protein_id=WP_010929660.1;transl_table=11 NZ_CP010961.1 RefSeq gene 171586 172215 . + . ID=gene178;Name=RD04_RS00895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00895;old_locus_tag=RD04_00885 NZ_CP010961.1 Protein Homology CDS 171586 172215 . + 0 ID=cds173;Parent=gene178;Dbxref=Genbank:WP_010929661.1;Name=WP_010929661.1;gbkey=CDS;product=threonine transporter RhtB;protein_id=WP_010929661.1;transl_table=11 NZ_CP010961.1 RefSeq gene 172264 173871 . + . ID=gene179;Name=prfC;gbkey=Gene;gene=prfC;gene_biotype=protein_coding;locus_tag=RD04_RS00900;old_locus_tag=RD04_00890 NZ_CP010961.1 Protein Homology CDS 172264 173871 . + 0 ID=cds174;Parent=gene179;Dbxref=Genbank:WP_003815895.1;Name=WP_003815895.1;Note=stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred%3B GDP/GTP-binding protein;gbkey=CDS;gene=prfC;product=peptide chain release factor 3;protein_id=WP_003815895.1;transl_table=11 NZ_CP010961.1 RefSeq gene 173908 174579 . + . ID=gene180;Name=RD04_RS00905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00905;old_locus_tag=RD04_00895 NZ_CP010961.1 Protein Homology CDS 173908 174579 . + 0 ID=cds175;Parent=gene180;Dbxref=Genbank:WP_023997012.1;Name=WP_023997012.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023997012.1;transl_table=11 NZ_CP010961.1 RefSeq gene 174661 175137 . - . ID=gene181;Name=RD04_RS00910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00910;old_locus_tag=RD04_00900 NZ_CP010961.1 Protein Homology CDS 174661 175137 . - 0 ID=cds176;Parent=gene181;Dbxref=Genbank:WP_003815898.1;Name=WP_003815898.1;gbkey=CDS;product=bacterioferritin;protein_id=WP_003815898.1;transl_table=11 NZ_CP010961.1 RefSeq gene 175392 176294 . + . ID=gene182;Name=RD04_RS00915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00915;old_locus_tag=RD04_00905 NZ_CP010961.1 GeneMarkS+ CDS 175392 176294 . + 0 ID=cds177;Parent=gene182;Dbxref=Genbank:WP_041337068.1;Name=WP_041337068.1;gbkey=CDS;product=integrase;protein_id=WP_041337068.1;transl_table=11 NZ_CP010961.1 RefSeq gene 176291 177098 . - . ID=gene183;Name=RD04_RS00920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00920;old_locus_tag=RD04_00910;pseudo=true NZ_CP010961.1 Protein Homology CDS 176291 177098 . - 0 ID=cds178;Parent=gene183;Note=frameshifted;gbkey=CDS;product=transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 177410 177937 . + . ID=gene184;Name=RD04_RS00925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00925;old_locus_tag=RD04_00915 NZ_CP010961.1 Protein Homology CDS 177410 177937 . + 0 ID=cds179;Parent=gene184;Dbxref=Genbank:WP_010929664.1;Name=WP_010929664.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010929664.1;transl_table=11 NZ_CP010961.1 RefSeq gene 178029 178844 . + . ID=gene185;Name=RD04_RS00930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00930;old_locus_tag=RD04_00920 NZ_CP010961.1 Protein Homology CDS 178029 178844 . + 0 ID=cds180;Parent=gene185;Dbxref=Genbank:WP_010929665.1;Name=WP_010929665.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010929665.1;transl_table=11 NZ_CP010961.1 RefSeq gene 178905 179639 . + . ID=gene186;Name=RD04_RS00935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00935;old_locus_tag=RD04_00925 NZ_CP010961.1 Protein Homology CDS 178905 179639 . + 0 ID=cds181;Parent=gene186;Dbxref=Genbank:WP_003808370.1;Name=WP_003808370.1;gbkey=CDS;product=sulfurtransferase;protein_id=WP_003808370.1;transl_table=11 NZ_CP010961.1 RefSeq gene 179677 181755 . - . ID=gene187;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=RD04_RS00940;old_locus_tag=RD04_00930 NZ_CP010961.1 Protein Homology CDS 179677 181755 . - 0 ID=cds182;Parent=gene187;Dbxref=Genbank:WP_010929666.1;Name=WP_010929666.1;Note=methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content;gbkey=CDS;gene=metG;product=methionine--tRNA ligase;protein_id=WP_010929666.1;transl_table=11 NZ_CP010961.1 RefSeq gene 182005 182277 . - . ID=gene188;Name=RD04_RS00945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00945;old_locus_tag=RD04_00935 NZ_CP010961.1 Protein Homology CDS 182005 182277 . - 0 ID=cds183;Parent=gene188;Dbxref=Genbank:WP_003808374.1;Name=WP_003808374.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003808374.1;transl_table=11 NZ_CP010961.1 RefSeq gene 182379 183464 . + . ID=gene189;Name=RD04_RS00950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00950;old_locus_tag=RD04_00940 NZ_CP010961.1 Protein Homology CDS 182379 183464 . + 0 ID=cds184;Parent=gene189;Dbxref=Genbank:WP_033446322.1;Name=WP_033446322.1;gbkey=CDS;product=ATP-binding protein;protein_id=WP_033446322.1;transl_table=11 NZ_CP010961.1 RefSeq gene 183468 185372 . + . ID=gene190;Name=RD04_RS00955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00955;old_locus_tag=RD04_00945 NZ_CP010961.1 Protein Homology CDS 183468 185372 . + 0 ID=cds185;Parent=gene190;Dbxref=Genbank:WP_010929668.1;Name=WP_010929668.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929668.1;transl_table=11 NZ_CP010961.1 RefSeq gene 185369 189006 . + . ID=gene191;Name=RD04_RS00960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS00960;old_locus_tag=RD04_00950;pseudo=true NZ_CP010961.1 Protein Homology CDS 185369 189006 . + 0 ID=cds186;Parent=gene191;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 189067 189630 . + . ID=gene192;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=RD04_RS00965;old_locus_tag=RD04_00955 NZ_CP010961.1 Protein Homology CDS 189067 189630 . + 0 ID=cds187;Parent=gene192;Dbxref=Genbank:WP_010929670.1;Name=WP_010929670.1;Note=Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis;gbkey=CDS;gene=dcd;product=deoxycytidine triphosphate deaminase;protein_id=WP_010929670.1;transl_table=11 NZ_CP010961.1 RefSeq gene 189638 190060 . - . ID=gene193;Name=RD04_RS00970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00970;old_locus_tag=RD04_00960 NZ_CP010961.1 Protein Homology CDS 189638 190060 . - 0 ID=cds188;Parent=gene193;Dbxref=Genbank:WP_003808385.1;Name=WP_003808385.1;gbkey=CDS;product=glyoxalase;protein_id=WP_003808385.1;transl_table=11 NZ_CP010961.1 RefSeq gene 190088 190507 . - . ID=gene194;Name=RD04_RS00975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00975;old_locus_tag=RD04_00965 NZ_CP010961.1 Protein Homology CDS 190088 190507 . - 0 ID=cds189;Parent=gene194;Dbxref=Genbank:WP_010929671.1;Name=WP_010929671.1;gbkey=CDS;product=glyoxalase;protein_id=WP_010929671.1;transl_table=11 NZ_CP010961.1 RefSeq gene 190536 190883 . - . ID=gene195;Name=RD04_RS00980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00980;old_locus_tag=RD04_00970 NZ_CP010961.1 Protein Homology CDS 190536 190883 . - 0 ID=cds190;Parent=gene195;Dbxref=Genbank:WP_019247490.1;Name=WP_019247490.1;gbkey=CDS;product=GNAT family N-acetyltransferase;protein_id=WP_019247490.1;transl_table=11 NZ_CP010961.1 RefSeq gene 191157 191606 . + . ID=gene196;Name=RD04_RS00985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00985;old_locus_tag=RD04_00975 NZ_CP010961.1 Protein Homology CDS 191157 191606 . + 0 ID=cds191;Parent=gene196;Dbxref=Genbank:WP_023853366.1;Name=WP_023853366.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853366.1;transl_table=11 NZ_CP010961.1 RefSeq gene 191761 194031 . + . ID=gene197;Name=RD04_RS00990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00990;old_locus_tag=RD04_00980 NZ_CP010961.1 Protein Homology CDS 191761 194031 . + 0 ID=cds192;Parent=gene197;Dbxref=Genbank:WP_003808393.1;Name=WP_003808393.1;gbkey=CDS;product=lysine decarboxylase;protein_id=WP_003808393.1;transl_table=11 NZ_CP010961.1 RefSeq gene 194107 195312 . + . ID=gene198;Name=RD04_RS00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS00995;old_locus_tag=RD04_00985 NZ_CP010961.1 Protein Homology CDS 194107 195312 . + 0 ID=cds193;Parent=gene198;Dbxref=Genbank:WP_019249381.1;Name=WP_019249381.1;gbkey=CDS;product=membrane protein;protein_id=WP_019249381.1;transl_table=11 NZ_CP010961.1 RefSeq gene 195411 196361 . + . ID=gene199;Name=RD04_RS01000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01000;old_locus_tag=RD04_00990 NZ_CP010961.1 Protein Homology CDS 195411 196361 . + 0 ID=cds194;Parent=gene199;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 196386 196724 . - . ID=gene200;Name=RD04_RS01005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01005;old_locus_tag=RD04_00995 NZ_CP010961.1 Protein Homology CDS 196386 196724 . - 0 ID=cds195;Parent=gene200;Dbxref=Genbank:WP_003812004.1;Name=WP_003812004.1;Note=indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA;gbkey=CDS;product=nitrogen regulatory protein P-II 1;protein_id=WP_003812004.1;transl_table=11 NZ_CP010961.1 RefSeq gene 196768 198411 . - . ID=gene201;Name=RD04_RS01010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01010;old_locus_tag=RD04_01000 NZ_CP010961.1 Protein Homology CDS 196768 198411 . - 0 ID=cds196;Parent=gene201;Dbxref=Genbank:WP_050818159.1;Name=WP_050818159.1;Note=NH(3)-dependent%3B catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers;gbkey=CDS;product=NAD+ synthase;protein_id=WP_050818159.1;transl_table=11 NZ_CP010961.1 RefSeq gene 198450 199796 . - . ID=gene202;Name=RD04_RS01015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01015;old_locus_tag=RD04_01005 NZ_CP010961.1 Protein Homology CDS 198450 199796 . - 0 ID=cds197;Parent=gene202;Dbxref=Genbank:WP_010931083.1;Name=WP_010931083.1;gbkey=CDS;product=mechanosensitive ion channel protein MscS;protein_id=WP_010931083.1;transl_table=11 NZ_CP010961.1 RefSeq gene 199904 201325 . + . ID=gene203;Name=RD04_RS01020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01020;old_locus_tag=RD04_01010 NZ_CP010961.1 Protein Homology CDS 199904 201325 . + 0 ID=cds198;Parent=gene203;Dbxref=Genbank:WP_003812010.1;Name=WP_003812010.1;Note=catalyzes the formation of arginine from (N-L-arginino)succinate;gbkey=CDS;product=argininosuccinate lyase;protein_id=WP_003812010.1;transl_table=11 NZ_CP010961.1 RefSeq gene 201395 201979 . - . ID=gene204;Name=RD04_RS01025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01025;old_locus_tag=RD04_01015 NZ_CP010961.1 Protein Homology CDS 201395 201979 . - 0 ID=cds199;Parent=gene204;Dbxref=Genbank:WP_010931084.1;Name=WP_010931084.1;gbkey=CDS;product=nitroreductase;protein_id=WP_010931084.1;transl_table=11 NZ_CP010961.1 RefSeq gene 202082 203032 . - . ID=gene205;Name=RD04_RS01030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01030;old_locus_tag=RD04_01020 NZ_CP010961.1 Protein Homology CDS 202082 203032 . - 0 ID=cds200;Parent=gene205;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 203131 204216 . - . ID=gene206;Name=RD04_RS01035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01035;old_locus_tag=RD04_01025 NZ_CP010961.1 Protein Homology CDS 203131 204216 . - 0 ID=cds201;Parent=gene206;Dbxref=Genbank:WP_003810865.1;Name=WP_003810865.1;gbkey=CDS;product=DNA polymerase IV;protein_id=WP_003810865.1;transl_table=11 NZ_CP010961.1 RefSeq gene 204314 204724 . + . ID=gene207;Name=RD04_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01040;old_locus_tag=RD04_01030 NZ_CP010961.1 Protein Homology CDS 204314 204724 . + 0 ID=cds202;Parent=gene207;Dbxref=Genbank:WP_010930072.1;Name=WP_010930072.1;gbkey=CDS;product=phenylacetic acid degradation protein;protein_id=WP_010930072.1;transl_table=11 NZ_CP010961.1 RefSeq gene 205340 207253 . + . ID=gene208;Name=RD04_RS01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01045;old_locus_tag=RD04_01035 NZ_CP010961.1 Protein Homology CDS 205340 207253 . + 0 ID=cds203;Parent=gene208;Dbxref=Genbank:WP_003810859.1;Name=WP_003810859.1;gbkey=CDS;product=peptidase;protein_id=WP_003810859.1;transl_table=11 NZ_CP010961.1 RefSeq gene 207389 210001 . + . ID=gene209;Name=RD04_RS01050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01050;old_locus_tag=RD04_01040 NZ_CP010961.1 Protein Homology CDS 207389 210001 . + 0 ID=cds204;Parent=gene209;Dbxref=Genbank:WP_010930071.1;Name=WP_010930071.1;gbkey=CDS;product=penicillin-binding protein 1A;protein_id=WP_010930071.1;transl_table=11 NZ_CP010961.1 RefSeq gene 210003 210737 . - . ID=gene210;Name=RD04_RS01055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01055;old_locus_tag=RD04_01045 NZ_CP010961.1 Protein Homology CDS 210003 210737 . - 0 ID=cds205;Parent=gene210;Dbxref=Genbank:WP_010930070.1;Name=WP_010930070.1;gbkey=CDS;product=serine/threonine protein phosphatase;protein_id=WP_010930070.1;transl_table=11 NZ_CP010961.1 RefSeq gene 210901 212082 . + . ID=gene211;Name=RD04_RS01060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01060;old_locus_tag=RD04_01050 NZ_CP010961.1 Protein Homology CDS 210901 212082 . + 0 ID=cds206;Parent=gene211;Dbxref=Genbank:WP_003810851.1;Name=WP_003810851.1;gbkey=CDS;product=membrane protein;protein_id=WP_003810851.1;transl_table=11 NZ_CP010961.1 RefSeq gene 212079 212291 . + . ID=gene212;Name=RD04_RS01065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01065;old_locus_tag=RD04_01055 NZ_CP010961.1 Protein Homology CDS 212079 212291 . + 0 ID=cds207;Parent=gene212;Dbxref=Genbank:WP_003810850.1;Name=WP_003810850.1;gbkey=CDS;product=membrane protein;protein_id=WP_003810850.1;transl_table=11 NZ_CP010961.1 RefSeq gene 212288 213268 . - . ID=gene213;Name=RD04_RS01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01070;old_locus_tag=RD04_01060 NZ_CP010961.1 Protein Homology CDS 212288 213268 . - 0 ID=cds208;Parent=gene213;Dbxref=Genbank:WP_010930069.1;Name=WP_010930069.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010930069.1;transl_table=11 NZ_CP010961.1 RefSeq gene 213314 214141 . - . ID=gene214;Name=RD04_RS01075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01075;old_locus_tag=RD04_01065 NZ_CP010961.1 Protein Homology CDS 213314 214141 . - 0 ID=cds209;Parent=gene214;Dbxref=Genbank:WP_010930068.1;Name=WP_010930068.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010930068.1;transl_table=11 NZ_CP010961.1 RefSeq gene 214291 216105 . + . ID=gene215;Name=RD04_RS01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01080;old_locus_tag=RD04_01070 NZ_CP010961.1 Protein Homology CDS 214291 216105 . + 0 ID=cds210;Parent=gene215;Dbxref=Genbank:WP_023852913.1;Name=WP_023852913.1;gbkey=CDS;product=ABC transporter region;protein_id=WP_023852913.1;transl_table=11 NZ_CP010961.1 RefSeq gene 216160 216543 . + . ID=gene216;Name=RD04_RS01085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01085;old_locus_tag=RD04_01075 NZ_CP010961.1 Protein Homology CDS 216160 216543 . + 0 ID=cds211;Parent=gene216;Dbxref=Genbank:WP_003810840.1;Name=WP_003810840.1;gbkey=CDS;product=ferredoxin;protein_id=WP_003810840.1;transl_table=11 NZ_CP010961.1 RefSeq gene 216540 217442 . - . ID=gene217;Name=RD04_RS01090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01090;old_locus_tag=RD04_01080 NZ_CP010961.1 GeneMarkS+ CDS 216540 217442 . - 0 ID=cds212;Parent=gene217;Dbxref=Genbank:WP_041166320.1;Name=WP_041166320.1;gbkey=CDS;product=integrase;protein_id=WP_041166320.1;transl_table=11 NZ_CP010961.1 RefSeq gene 217602 217853 . - . ID=gene218;Name=RD04_RS01095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01095;old_locus_tag=RD04_01085 NZ_CP010961.1 Protein Homology CDS 217602 217853 . - 0 ID=cds213;Parent=gene218;Dbxref=Genbank:WP_003810839.1;Name=WP_003810839.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003810839.1;transl_table=11 NZ_CP010961.1 RefSeq gene 218047 218262 . - . ID=gene219;Name=RD04_RS01100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01100;old_locus_tag=RD04_01090 NZ_CP010961.1 Protein Homology CDS 218047 218262 . - 0 ID=cds214;Parent=gene219;Dbxref=Genbank:WP_003810837.1;Name=WP_003810837.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003810837.1;transl_table=11 NZ_CP010961.1 RefSeq gene 218359 219477 . - . ID=gene220;Name=RD04_RS01105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01105;old_locus_tag=RD04_01095 NZ_CP010961.1 Protein Homology CDS 218359 219477 . - 0 ID=cds215;Parent=gene220;Dbxref=Genbank:WP_003810835.1;Name=WP_003810835.1;gbkey=CDS;product=mannose-6-phosphate isomerase;protein_id=WP_003810835.1;transl_table=11 NZ_CP010961.1 RefSeq gene 219597 219809 . - . ID=gene221;Name=RD04_RS01110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01110;old_locus_tag=RD04_01100 NZ_CP010961.1 Protein Homology CDS 219597 219809 . - 0 ID=cds216;Parent=gene221;Dbxref=Genbank:WP_003810832.1;Name=WP_003810832.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003810832.1;transl_table=11 NZ_CP010961.1 RefSeq gene 219969 220178 . - . ID=gene222;Name=RD04_RS01115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01115;old_locus_tag=RD04_01105 NZ_CP010961.1 Protein Homology CDS 219969 220178 . - 0 ID=cds217;Parent=gene222;Dbxref=Genbank:WP_047122791.1;Name=WP_047122791.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_047122791.1;transl_table=11 NZ_CP010961.1 RefSeq gene 220243 221193 . - . ID=gene223;Name=RD04_RS01120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01120;old_locus_tag=RD04_01110 NZ_CP010961.1 Protein Homology CDS 220243 221193 . - 0 ID=cds218;Parent=gene223;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 221290 222354 . - . ID=gene224;Name=RD04_RS01125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS01125;old_locus_tag=RD04_01115;partial=true;pseudo=true;start_range=.,221290 NZ_CP010961.1 Protein Homology CDS 221290 222354 . - 0 ID=cds219;Parent=gene224;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=methylmalonyl-CoA carboxyltransferase;pseudo=true;start_range=.,221290;transl_table=11 NZ_CP010961.1 RefSeq gene 222370 223740 . - . ID=gene225;Name=RD04_RS01130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01130;old_locus_tag=RD04_01120 NZ_CP010961.1 Protein Homology CDS 222370 223740 . - 0 ID=cds220;Parent=gene225;Dbxref=Genbank:WP_010930062.1;Name=WP_010930062.1;Note=an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase%2C an enzyme that catalyzes the formation of malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism;gbkey=CDS;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_010930062.1;transl_table=11 NZ_CP010961.1 RefSeq gene 223773 224564 . - . ID=gene226;Name=RD04_RS01135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01135;old_locus_tag=RD04_01125 NZ_CP010961.1 Protein Homology CDS 223773 224564 . - 0 ID=cds221;Parent=gene226;Dbxref=Genbank:WP_010930061.1;Name=WP_010930061.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010930061.1;transl_table=11 NZ_CP010961.1 RefSeq gene 224577 225632 . - . ID=gene227;Name=RD04_RS01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01140;old_locus_tag=RD04_01130 NZ_CP010961.1 Protein Homology CDS 224577 225632 . - 0 ID=cds222;Parent=gene227;Dbxref=Genbank:WP_010930060.1;Name=WP_010930060.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930060.1;transl_table=11 NZ_CP010961.1 RefSeq gene 225658 226533 . - . ID=gene228;Name=RD04_RS01145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01145;old_locus_tag=RD04_01135 NZ_CP010961.1 Protein Homology CDS 225658 226533 . - 0 ID=cds223;Parent=gene228;Dbxref=Genbank:WP_019247557.1;Name=WP_019247557.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247557.1;transl_table=11 NZ_CP010961.1 RefSeq gene 226639 226887 . - . ID=gene229;Name=RD04_RS01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01150;old_locus_tag=RD04_01140 NZ_CP010961.1 Protein Homology CDS 226639 226887 . - 0 ID=cds224;Parent=gene229;Dbxref=Genbank:WP_023852826.1;Name=WP_023852826.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023852826.1;transl_table=11 NZ_CP010961.1 RefSeq gene 226922 228376 . - . ID=gene230;Name=RD04_RS01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01155;old_locus_tag=RD04_01145 NZ_CP010961.1 Protein Homology CDS 226922 228376 . - 0 ID=cds225;Parent=gene230;Dbxref=Genbank:WP_003819989.1;Name=WP_003819989.1;gbkey=CDS;product=carboxylase;protein_id=WP_003819989.1;transl_table=11 NZ_CP010961.1 RefSeq gene 228373 228894 . - . ID=gene231;Name=RD04_RS01160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01160;old_locus_tag=RD04_01150 NZ_CP010961.1 Protein Homology CDS 228373 228894 . - 0 ID=cds226;Parent=gene231;Dbxref=Genbank:WP_004568140.1;Name=WP_004568140.1;gbkey=CDS;product=acetyl-CoA carboxylase biotin carboxyl carrier protein subunit;protein_id=WP_004568140.1;transl_table=11 NZ_CP010961.1 RefSeq gene 228923 230275 . - . ID=gene232;Name=RD04_RS01165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01165;old_locus_tag=RD04_01155 NZ_CP010961.1 Protein Homology CDS 228923 230275 . - 0 ID=cds227;Parent=gene232;Dbxref=Genbank:WP_010930057.1;Name=WP_010930057.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930057.1;transl_table=11 NZ_CP010961.1 RefSeq gene 230499 233395 . - . ID=gene233;Name=RD04_RS01170;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS01170;old_locus_tag=RD04_01160;pseudo=true NZ_CP010961.1 Protein Homology CDS 230499 233395 . - 0 ID=cds228;Parent=gene233;Note=frameshifted;gbkey=CDS;product=metal-dependent phosphohydrolase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 233655 233731 . - . ID=gene234;Name=RD04_RS01175;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS01175;old_locus_tag=RD04_01165 NZ_CP010961.1 tRNAscan-SE tRNA 233655 233731 . - . ID=rna5;Parent=gene234;anticodon=(pos:complement(233695..233697));gbkey=tRNA;product=tRNA-Arg NZ_CP010961.1 tRNAscan-SE exon 233655 233731 . - . ID=id7;Parent=rna5;anticodon=(pos:complement(233695..233697));gbkey=tRNA;product=tRNA-Arg NZ_CP010961.1 RefSeq gene 233913 235405 . + . ID=gene235;Name=RD04_RS01180;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS01180;old_locus_tag=RD04_01170;pseudo=true NZ_CP010961.1 Protein Homology CDS 233913 235405 . + 0 ID=cds229;Parent=gene235;Note=frameshifted%3B internal stop;gbkey=CDS;product=aldehyde dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 235540 236841 . + . ID=gene236;Name=RD04_RS01185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01185;old_locus_tag=RD04_01175 NZ_CP010961.1 Protein Homology CDS 235540 236841 . + 0 ID=cds230;Parent=gene236;Dbxref=Genbank:WP_010930056.1;Name=WP_010930056.1;gbkey=CDS;product=phospholipase;protein_id=WP_010930056.1;transl_table=11 NZ_CP010961.1 RefSeq gene 236856 237572 . - . ID=gene237;Name=RD04_RS01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01190;old_locus_tag=RD04_01180 NZ_CP010961.1 Protein Homology CDS 236856 237572 . - 0 ID=cds231;Parent=gene237;Dbxref=Genbank:WP_010930055.1;Name=WP_010930055.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930055.1;transl_table=11 NZ_CP010961.1 RefSeq gene 237854 238534 . + . ID=gene238;Name=RD04_RS01195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01195;old_locus_tag=RD04_01185 NZ_CP010961.1 Protein Homology CDS 237854 238534 . + 0 ID=cds232;Parent=gene238;Dbxref=Genbank:WP_010930054.1;Name=WP_010930054.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010930054.1;transl_table=11 NZ_CP010961.1 RefSeq gene 238546 238713 . - . ID=gene239;Name=RD04_RS01200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01200;old_locus_tag=RD04_01190 NZ_CP010961.1 Protein Homology CDS 238546 238713 . - 0 ID=cds233;Parent=gene239;Dbxref=Genbank:WP_003809770.1;Name=WP_003809770.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003809770.1;transl_table=11 NZ_CP010961.1 RefSeq gene 239062 239721 . - . ID=gene240;Name=RD04_RS01205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01205;old_locus_tag=RD04_01195 NZ_CP010961.1 Protein Homology CDS 239062 239721 . - 0 ID=cds234;Parent=gene240;Dbxref=Genbank:WP_010930052.1;Name=WP_010930052.1;Note=catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds%3B may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide;gbkey=CDS;product=thiopurine S-methyltransferase;protein_id=WP_010930052.1;transl_table=11 NZ_CP010961.1 RefSeq gene 240120 241952 . + . ID=gene241;Name=RD04_RS01210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01210;old_locus_tag=RD04_01200 NZ_CP010961.1 Protein Homology CDS 240120 241952 . + 0 ID=cds235;Parent=gene241;Dbxref=Genbank:WP_010930051.1;Name=WP_010930051.1;gbkey=CDS;product=multidrug ABC transporter ATP-binding protein;protein_id=WP_010930051.1;transl_table=11 NZ_CP010961.1 RefSeq gene 241949 242899 . - . ID=gene242;Name=RD04_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01215;old_locus_tag=RD04_01205 NZ_CP010961.1 Protein Homology CDS 241949 242899 . - 0 ID=cds236;Parent=gene242;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 242981 243592 . - . ID=gene243;Name=RD04_RS01220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01220;old_locus_tag=RD04_01210 NZ_CP010961.1 GeneMarkS+ CDS 242981 243592 . - 0 ID=cds237;Parent=gene243;Dbxref=Genbank:WP_023853154.1;Name=WP_023853154.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853154.1;transl_table=11 NZ_CP010961.1 RefSeq gene 244063 245778 . + . ID=gene244;Name=RD04_RS01225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01225;old_locus_tag=RD04_01215 NZ_CP010961.1 Protein Homology CDS 244063 245778 . + 0 ID=cds238;Parent=gene244;Dbxref=Genbank:WP_003814007.1;Name=WP_003814007.1;Note=catalyzes the formation of 2-acetolactate from pyruvate%2C leucine sensitive;gbkey=CDS;product=acetolactate synthase%2C large subunit%2C biosynthetic type;protein_id=WP_003814007.1;transl_table=11 NZ_CP010961.1 RefSeq gene 245789 246280 . + . ID=gene245;Name=RD04_RS01230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01230;old_locus_tag=RD04_01220 NZ_CP010961.1 Protein Homology CDS 245789 246280 . + 0 ID=cds239;Parent=gene245;Dbxref=Genbank:WP_003814006.1;Name=WP_003814006.1;gbkey=CDS;product=acetolactate synthase small subunit;protein_id=WP_003814006.1;transl_table=11 NZ_CP010961.1 RefSeq gene 246353 247369 . + . ID=gene246;Name=RD04_RS01235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01235;old_locus_tag=RD04_01225 NZ_CP010961.1 Protein Homology CDS 246353 247369 . + 0 ID=cds240;Parent=gene246;Dbxref=Genbank:WP_010930015.1;Name=WP_010930015.1;Note=catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis;gbkey=CDS;product=ketol-acid reductoisomerase;protein_id=WP_010930015.1;transl_table=11 NZ_CP010961.1 RefSeq gene 247537 248316 . + . ID=gene247;Name=RD04_RS01240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01240;old_locus_tag=RD04_01230 NZ_CP010961.1 Protein Homology CDS 247537 248316 . + 0 ID=cds241;Parent=gene247;Dbxref=Genbank:WP_003814004.1;Name=WP_003814004.1;gbkey=CDS;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=WP_003814004.1;transl_table=11 NZ_CP010961.1 RefSeq gene 248335 248862 . - . ID=gene248;Name=RD04_RS01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01245;old_locus_tag=RD04_01235 NZ_CP010961.1 Protein Homology CDS 248335 248862 . - 0 ID=cds242;Parent=gene248;Dbxref=Genbank:WP_003814003.1;Name=WP_003814003.1;gbkey=CDS;product=lipoprotein;protein_id=WP_003814003.1;transl_table=11 NZ_CP010961.1 RefSeq gene 249156 249425 . + . ID=gene249;Name=RD04_RS01250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01250;old_locus_tag=RD04_01240 NZ_CP010961.1 Protein Homology CDS 249156 249425 . + 0 ID=cds243;Parent=gene249;Dbxref=Genbank:WP_003814002.1;Name=WP_003814002.1;gbkey=CDS;product=30S ribosomal protein S15;protein_id=WP_003814002.1;transl_table=11 NZ_CP010961.1 RefSeq gene 249516 251675 . + . ID=gene250;Name=RD04_RS01255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01255;old_locus_tag=RD04_01245 NZ_CP010961.1 Protein Homology CDS 249516 251675 . + 0 ID=cds244;Parent=gene250;Dbxref=Genbank:WP_003821234.1;Name=WP_003821234.1;gbkey=CDS;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_003821234.1;transl_table=11 NZ_CP010961.1 RefSeq gene 251796 252515 . + . ID=gene251;Name=RD04_RS01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01260;old_locus_tag=RD04_01250 NZ_CP010961.1 Protein Homology CDS 251796 252515 . + 0 ID=cds245;Parent=gene251;Dbxref=Genbank:WP_003814000.1;Name=WP_003814000.1;gbkey=CDS;product=lipoprotein;protein_id=WP_003814000.1;transl_table=11 NZ_CP010961.1 RefSeq gene 252512 253462 . - . ID=gene252;Name=RD04_RS01265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01265;old_locus_tag=RD04_01255 NZ_CP010961.1 Protein Homology CDS 252512 253462 . - 0 ID=cds246;Parent=gene252;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 253603 254820 . + . ID=gene253;Name=RD04_RS01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01270;old_locus_tag=RD04_01260 NZ_CP010961.1 Protein Homology CDS 253603 254820 . + 0 ID=cds247;Parent=gene253;Dbxref=Genbank:WP_003813999.1;Name=WP_003813999.1;gbkey=CDS;product=threonine ammonia-lyase;protein_id=WP_003813999.1;transl_table=11 NZ_CP010961.1 RefSeq gene 254814 255425 . - . ID=gene254;Name=RD04_RS01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01275;old_locus_tag=RD04_01265 NZ_CP010961.1 Protein Homology CDS 254814 255425 . - 0 ID=cds248;Parent=gene254;Dbxref=Genbank:WP_010930016.1;Name=WP_010930016.1;gbkey=CDS;product=PIN domain-containing protein;protein_id=WP_010930016.1;transl_table=11 NZ_CP010961.1 RefSeq gene 255485 255569 . - . ID=gene255;Name=RD04_RS01280;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS01280;old_locus_tag=RD04_01270 NZ_CP010961.1 tRNAscan-SE tRNA 255485 255569 . - . ID=rna6;Parent=gene255;anticodon=(pos:complement(255533..255535));gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 tRNAscan-SE exon 255485 255569 . - . ID=id8;Parent=rna6;anticodon=(pos:complement(255533..255535));gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 RefSeq gene 256059 257036 . + . ID=gene256;Name=RD04_RS01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01285;old_locus_tag=RD04_01275 NZ_CP010961.1 Protein Homology CDS 256059 257036 . + 0 ID=cds249;Parent=gene256;Dbxref=Genbank:WP_003813997.1;Name=WP_003813997.1;gbkey=CDS;product=NAD(P)H quinone oxidoreductase;protein_id=WP_003813997.1;transl_table=11 NZ_CP010961.1 RefSeq gene 257180 257926 . + . ID=gene257;Name=RD04_RS01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01290;old_locus_tag=RD04_01280 NZ_CP010961.1 Protein Homology CDS 257180 257926 . + 0 ID=cds250;Parent=gene257;Dbxref=Genbank:WP_003813996.1;Name=WP_003813996.1;gbkey=CDS;product=triose-phosphate isomerase;protein_id=WP_003813996.1;transl_table=11 NZ_CP010961.1 RefSeq gene 257948 258394 . + . ID=gene258;Name=RD04_RS01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01295;old_locus_tag=RD04_01285 NZ_CP010961.1 Protein Homology CDS 257948 258394 . + 0 ID=cds251;Parent=gene258;Dbxref=Genbank:WP_010930017.1;Name=WP_010930017.1;gbkey=CDS;product=preprotein translocase subunit SecG;protein_id=WP_010930017.1;transl_table=11 NZ_CP010961.1 RefSeq gene 258445 258529 . + . ID=gene259;Name=RD04_RS01300;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS01300;old_locus_tag=RD04_01290 NZ_CP010961.1 tRNAscan-SE tRNA 258445 258529 . + . ID=rna7;Parent=gene259;anticodon=(pos:258479..258481);gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 tRNAscan-SE exon 258445 258529 . + . ID=id9;Parent=rna7;anticodon=(pos:258479..258481);gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 RefSeq gene 259182 261413 . + . ID=gene260;Name=RD04_RS01305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01305;old_locus_tag=RD04_01295 NZ_CP010961.1 Protein Homology CDS 259182 261413 . + 0 ID=cds252;Parent=gene260;Dbxref=Genbank:WP_010930018.1;Name=WP_010930018.1;Note=proton-motive-force-driven choline transporter;gbkey=CDS;product=choline transporter BetT;protein_id=WP_010930018.1;transl_table=11 NZ_CP010961.1 RefSeq gene 261436 262236 . - . ID=gene261;Name=RD04_RS01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01310;old_locus_tag=RD04_01300 NZ_CP010961.1 Protein Homology CDS 261436 262236 . - 0 ID=cds253;Parent=gene261;Dbxref=Genbank:WP_003813993.1;Name=WP_003813993.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003813993.1;transl_table=11 NZ_CP010961.1 RefSeq gene 262518 263750 . + . ID=gene262;Name=RD04_RS01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01315;old_locus_tag=RD04_01305 NZ_CP010961.1 Protein Homology CDS 262518 263750 . + 0 ID=cds254;Parent=gene262;Dbxref=Genbank:WP_003813992.1;Name=WP_003813992.1;gbkey=CDS;product=methylaspartate ammonia-lyase;protein_id=WP_003813992.1;transl_table=11 NZ_CP010961.1 RefSeq gene 263861 264850 . + . ID=gene263;Name=RD04_RS01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01320;old_locus_tag=RD04_01310 NZ_CP010961.1 Protein Homology CDS 263861 264850 . + 0 ID=cds255;Parent=gene263;Dbxref=Genbank:WP_003813991.1;Name=WP_003813991.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813991.1;transl_table=11 NZ_CP010961.1 RefSeq gene 264881 266269 . + . ID=gene264;Name=RD04_RS01325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01325;old_locus_tag=RD04_01315 NZ_CP010961.1 Protein Homology CDS 264881 266269 . + 0 ID=cds256;Parent=gene264;Dbxref=Genbank:WP_010930019.1;Name=WP_010930019.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930019.1;transl_table=11 NZ_CP010961.1 RefSeq gene 266317 266691 . + . ID=gene265;Name=RD04_RS01330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01330;old_locus_tag=RD04_01320 NZ_CP010961.1 Protein Homology CDS 266317 266691 . + 0 ID=cds257;Parent=gene265;Dbxref=Genbank:WP_019247355.1;Name=WP_019247355.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247355.1;transl_table=11 NZ_CP010961.1 RefSeq gene 266682 267809 . + . ID=gene266;Name=RD04_RS01335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01335;old_locus_tag=RD04_01325 NZ_CP010961.1 Protein Homology CDS 266682 267809 . + 0 ID=cds258;Parent=gene266;Dbxref=Genbank:WP_019247356.1;Name=WP_019247356.1;gbkey=CDS;product=argininosuccinate lyase;protein_id=WP_019247356.1;transl_table=11 NZ_CP010961.1 RefSeq gene 267868 268851 . + . ID=gene267;Name=RD04_RS01340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01340;old_locus_tag=RD04_01330 NZ_CP010961.1 Protein Homology CDS 267868 268851 . + 0 ID=cds259;Parent=gene267;Dbxref=Genbank:WP_003813988.1;Name=WP_003813988.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003813988.1;transl_table=11 NZ_CP010961.1 RefSeq gene 269048 270064 . + . ID=gene268;Name=RD04_RS01345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01345;old_locus_tag=RD04_01335 NZ_CP010961.1 Protein Homology CDS 269048 270064 . + 0 ID=cds260;Parent=gene268;Dbxref=Genbank:WP_010931561.1;Name=WP_010931561.1;gbkey=CDS;product=transposase;protein_id=WP_010931561.1;transl_table=11 NZ_CP010961.1 RefSeq gene 270261 271085 . - . ID=gene269;Name=RD04_RS01350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01350;old_locus_tag=RD04_01340 NZ_CP010961.1 Protein Homology CDS 270261 271085 . - 0 ID=cds261;Parent=gene269;Dbxref=Genbank:WP_003813987.1;Name=WP_003813987.1;gbkey=CDS;product=3-oxoacyl-ACP reductase;protein_id=WP_003813987.1;transl_table=11 NZ_CP010961.1 RefSeq gene 271163 272053 . - . ID=gene270;Name=RD04_RS01355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01355;old_locus_tag=RD04_01345 NZ_CP010961.1 Protein Homology CDS 271163 272053 . - 0 ID=cds262;Parent=gene270;Dbxref=Genbank:WP_010930020.1;Name=WP_010930020.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930020.1;transl_table=11 NZ_CP010961.1 RefSeq gene 272257 273408 . + . ID=gene271;Name=RD04_RS01360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01360;old_locus_tag=RD04_01350 NZ_CP010961.1 Protein Homology CDS 272257 273408 . + 0 ID=cds263;Parent=gene271;Dbxref=Genbank:WP_010930021.1;Name=WP_010930021.1;Note=catalyzes the formation of L-homocysteine from cystathionine;gbkey=CDS;product=cystathionine beta-lyase;protein_id=WP_010930021.1;transl_table=11 NZ_CP010961.1 RefSeq gene 273412 274443 . + . ID=gene272;Name=RD04_RS01365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01365;old_locus_tag=RD04_01355 NZ_CP010961.1 Protein Homology CDS 273412 274443 . + 0 ID=cds264;Parent=gene272;Dbxref=Genbank:WP_010930022.1;Name=WP_010930022.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930022.1;transl_table=11 NZ_CP010961.1 RefSeq gene 274572 275543 . + . ID=gene273;Name=RD04_RS01370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01370;old_locus_tag=RD04_01360 NZ_CP010961.1 Protein Homology CDS 274572 275543 . + 0 ID=cds265;Parent=gene273;Dbxref=Genbank:WP_010930023.1;Name=WP_010930023.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930023.1;transl_table=11 NZ_CP010961.1 RefSeq gene 275568 277652 . + . ID=gene274;Name=RD04_RS01375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01375;old_locus_tag=RD04_01365 NZ_CP010961.1 Protein Homology CDS 275568 277652 . + 0 ID=cds266;Parent=gene274;Dbxref=Genbank:WP_003813982.1;Name=WP_003813982.1;gbkey=CDS;product=rhodanese-like domain-containing protein;protein_id=WP_003813982.1;transl_table=11 NZ_CP010961.1 RefSeq gene 277719 278711 . - . ID=gene275;Name=RD04_RS01380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01380;old_locus_tag=RD04_01370 NZ_CP010961.1 Protein Homology CDS 277719 278711 . - 0 ID=cds267;Parent=gene275;Dbxref=Genbank:WP_003813981.1;Name=WP_003813981.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813981.1;transl_table=11 NZ_CP010961.1 RefSeq gene 278820 280154 . - . ID=gene276;Name=RD04_RS01385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01385;old_locus_tag=RD04_01375 NZ_CP010961.1 Protein Homology CDS 278820 280154 . - 0 ID=cds268;Parent=gene276;Dbxref=Genbank:WP_010930024.1;Name=WP_010930024.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930024.1;transl_table=11 NZ_CP010961.1 RefSeq gene 280180 282192 . - . ID=gene277;Name=RD04_RS01390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01390;old_locus_tag=RD04_01380 NZ_CP010961.1 Protein Homology CDS 280180 282192 . - 0 ID=cds269;Parent=gene277;Dbxref=Genbank:WP_010930025.1;Name=WP_010930025.1;gbkey=CDS;product=hydantoin utilization protein B;protein_id=WP_010930025.1;transl_table=11 NZ_CP010961.1 RefSeq gene 282189 284237 . - . ID=gene278;Name=RD04_RS01395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01395;old_locus_tag=RD04_01385 NZ_CP010961.1 Protein Homology CDS 282189 284237 . - 0 ID=cds270;Parent=gene278;Dbxref=Genbank:WP_023853163.1;Name=WP_023853163.1;gbkey=CDS;product=hydantoinase/oxoprolinase;protein_id=WP_023853163.1;transl_table=11 NZ_CP010961.1 RefSeq gene 284341 284988 . + . ID=gene279;Name=RD04_RS01400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01400;old_locus_tag=RD04_01390 NZ_CP010961.1 Protein Homology CDS 284341 284988 . + 0 ID=cds271;Parent=gene279;Dbxref=Genbank:WP_010930027.1;Name=WP_010930027.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010930027.1;transl_table=11 NZ_CP010961.1 RefSeq gene 285171 285623 . + . ID=gene280;Name=RD04_RS01405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01405;old_locus_tag=RD04_01395 NZ_CP010961.1 Protein Homology CDS 285171 285623 . + 0 ID=cds272;Parent=gene280;Dbxref=Genbank:WP_010930028.1;Name=WP_010930028.1;gbkey=CDS;product=azurin;protein_id=WP_010930028.1;transl_table=11 NZ_CP010961.1 RefSeq gene 285667 286338 . - . ID=gene281;Name=RD04_RS01410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01410;old_locus_tag=RD04_01400 NZ_CP010961.1 Protein Homology CDS 285667 286338 . - 0 ID=cds273;Parent=gene281;Dbxref=Genbank:WP_010926969.1;Name=WP_010926969.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010926969.1;transl_table=11 NZ_CP010961.1 RefSeq gene 286353 287846 . - . ID=gene282;Name=RD04_RS01415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01415;old_locus_tag=RD04_01405 NZ_CP010961.1 Protein Homology CDS 286353 287846 . - 0 ID=cds274;Parent=gene282;Dbxref=Genbank:WP_010930029.1;Name=WP_010930029.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_010930029.1;transl_table=11 NZ_CP010961.1 RefSeq gene 287843 290956 . - . ID=gene283;Name=RD04_RS01420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01420;old_locus_tag=RD04_01410 NZ_CP010961.1 Protein Homology CDS 287843 290956 . - 0 ID=cds275;Parent=gene283;Dbxref=Genbank:WP_010930030.1;Name=WP_010930030.1;gbkey=CDS;product=acriflavine resistance protein B;protein_id=WP_010930030.1;transl_table=11 NZ_CP010961.1 RefSeq gene 290969 292075 . - . ID=gene284;Name=RD04_RS01425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01425;old_locus_tag=RD04_01415 NZ_CP010961.1 Protein Homology CDS 290969 292075 . - 0 ID=cds276;Parent=gene284;Dbxref=Genbank:WP_010930031.1;Name=WP_010930031.1;gbkey=CDS;product=MexH family multidrug efflux RND transporter periplasmic adaptor subunit;protein_id=WP_010930031.1;transl_table=11 NZ_CP010961.1 RefSeq gene 292199 292867 . - . ID=gene285;Name=RD04_RS01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01430;old_locus_tag=RD04_01420 NZ_CP010961.1 Protein Homology CDS 292199 292867 . - 0 ID=cds277;Parent=gene285;Dbxref=Genbank:WP_010930032.1;Name=WP_010930032.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010930032.1;transl_table=11 NZ_CP010961.1 RefSeq gene 293088 294038 . + . ID=gene286;Name=RD04_RS01435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01435;old_locus_tag=RD04_01425 NZ_CP010961.1 Protein Homology CDS 293088 294038 . + 0 ID=cds278;Parent=gene286;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 294121 296079 . + . ID=gene287;Name=RD04_RS01440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01440;old_locus_tag=RD04_01430 NZ_CP010961.1 Protein Homology CDS 294121 296079 . + 0 ID=cds279;Parent=gene287;Dbxref=Genbank:WP_003813960.1;Name=WP_003813960.1;gbkey=CDS;product=choline transporter;protein_id=WP_003813960.1;transl_table=11 NZ_CP010961.1 RefSeq gene 296107 296808 . + . ID=gene288;Name=RD04_RS01445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01445;old_locus_tag=RD04_01435 NZ_CP010961.1 Protein Homology CDS 296107 296808 . + 0 ID=cds280;Parent=gene288;Dbxref=Genbank:WP_010930033.1;Name=WP_010930033.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930033.1;transl_table=11 NZ_CP010961.1 RefSeq gene 296955 297770 . + . ID=gene289;Name=RD04_RS01450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01450;old_locus_tag=RD04_01440 NZ_CP010961.1 Protein Homology CDS 296955 297770 . + 0 ID=cds281;Parent=gene289;Dbxref=Genbank:WP_020699608.1;Name=WP_020699608.1;gbkey=CDS;product=diacylglycerol kinase;protein_id=WP_020699608.1;transl_table=11 NZ_CP010961.1 RefSeq gene 297767 298582 . + . ID=gene290;Name=RD04_RS01455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01455;old_locus_tag=RD04_01445 NZ_CP010961.1 Protein Homology CDS 297767 298582 . + 0 ID=cds282;Parent=gene290;Dbxref=Genbank:WP_003813954.1;Name=WP_003813954.1;gbkey=CDS;product=DNA repair exonuclease;protein_id=WP_003813954.1;transl_table=11 NZ_CP010961.1 RefSeq gene 298647 299402 . + . ID=gene291;Name=RD04_RS01460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01460;old_locus_tag=RD04_01450 NZ_CP010961.1 Protein Homology CDS 298647 299402 . + 0 ID=cds283;Parent=gene291;Dbxref=Genbank:WP_023994630.1;Name=WP_023994630.1;gbkey=CDS;product=PAP2 family protein;protein_id=WP_023994630.1;transl_table=11 NZ_CP010961.1 RefSeq gene 299386 299820 . - . ID=gene292;Name=RD04_RS01465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01465;old_locus_tag=RD04_01455 NZ_CP010961.1 Protein Homology CDS 299386 299820 . - 0 ID=cds284;Parent=gene292;Dbxref=Genbank:WP_003813951.1;Name=WP_003813951.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813951.1;transl_table=11 NZ_CP010961.1 RefSeq gene 299817 300251 . - . ID=gene293;Name=RD04_RS01470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01470;old_locus_tag=RD04_01460 NZ_CP010961.1 Protein Homology CDS 299817 300251 . - 0 ID=cds285;Parent=gene293;Dbxref=Genbank:WP_003813949.1;Name=WP_003813949.1;gbkey=CDS;product=thioesterase;protein_id=WP_003813949.1;transl_table=11 NZ_CP010961.1 RefSeq gene 300253 300852 . - . ID=gene294;Name=RD04_RS01475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01475;old_locus_tag=RD04_01465 NZ_CP010961.1 Protein Homology CDS 300253 300852 . - 0 ID=cds286;Parent=gene294;Dbxref=Genbank:WP_033446246.1;Name=WP_033446246.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_033446246.1;transl_table=11 NZ_CP010961.1 RefSeq gene 300825 301775 . - . ID=gene295;Name=RD04_RS01480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01480;old_locus_tag=RD04_01470 NZ_CP010961.1 Protein Homology CDS 300825 301775 . - 0 ID=cds287;Parent=gene295;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 302088 303245 . + . ID=gene296;Name=RD04_RS01485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01485;old_locus_tag=RD04_01475 NZ_CP010961.1 Protein Homology CDS 302088 303245 . + 0 ID=cds288;Parent=gene296;Dbxref=Genbank:WP_010930034.1;Name=WP_010930034.1;gbkey=CDS;product=porin;protein_id=WP_010930034.1;transl_table=11 NZ_CP010961.1 RefSeq gene 303434 303793 . + . ID=gene297;Name=RD04_RS01490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01490;old_locus_tag=RD04_01480 NZ_CP010961.1 Protein Homology CDS 303434 303793 . + 0 ID=cds289;Parent=gene297;Dbxref=Genbank:WP_003813943.1;Name=WP_003813943.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit A;protein_id=WP_003813943.1;transl_table=11 NZ_CP010961.1 RefSeq gene 303830 304306 . + . ID=gene298;Name=RD04_RS01495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01495;old_locus_tag=RD04_01485 NZ_CP010961.1 Protein Homology CDS 303830 304306 . + 0 ID=cds290;Parent=gene298;Dbxref=Genbank:WP_003813941.1;Name=WP_003813941.1;Note=The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen;gbkey=CDS;product=NADH-quinone oxidoreductase subunit B;protein_id=WP_003813941.1;transl_table=11 NZ_CP010961.1 RefSeq gene 304384 305004 . + . ID=gene299;Name=RD04_RS01500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01500;old_locus_tag=RD04_01490 NZ_CP010961.1 Protein Homology CDS 304384 305004 . + 0 ID=cds291;Parent=gene299;Dbxref=Genbank:WP_023997298.1;Name=WP_023997298.1;gbkey=CDS;product=NADH dehydrogenase C subunit;protein_id=WP_023997298.1;transl_table=11 NZ_CP010961.1 RefSeq gene 305007 306263 . + . ID=gene300;Name=RD04_RS01505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01505;old_locus_tag=RD04_01495 NZ_CP010961.1 Protein Homology CDS 305007 306263 . + 0 ID=cds292;Parent=gene300;Dbxref=Genbank:WP_024000900.1;Name=WP_024000900.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH dehydrogenase subunit D;protein_id=WP_024000900.1;transl_table=11 NZ_CP010961.1 RefSeq gene 306309 306803 . + . ID=gene301;Name=RD04_RS01510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01510;old_locus_tag=RD04_01500 NZ_CP010961.1 Protein Homology CDS 306309 306803 . + 0 ID=cds293;Parent=gene301;Dbxref=Genbank:WP_003813932.1;Name=WP_003813932.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit E;protein_id=WP_003813932.1;transl_table=11 NZ_CP010961.1 RefSeq gene 306800 308167 . + . ID=gene302;Name=RD04_RS01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01515;old_locus_tag=RD04_01505 NZ_CP010961.1 Protein Homology CDS 306800 308167 . + 0 ID=cds294;Parent=gene302;Dbxref=Genbank:WP_003813930.1;Name=WP_003813930.1;Note=part of NADH-ubiquinone oxidoreductase complex I%3B shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase;gbkey=CDS;product=NADH-quinone oxidoreductase subunit F;protein_id=WP_003813930.1;transl_table=11 NZ_CP010961.1 RefSeq gene 308183 310510 . + . ID=gene303;Name=RD04_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01520;old_locus_tag=RD04_01510 NZ_CP010961.1 Protein Homology CDS 308183 310510 . + 0 ID=cds295;Parent=gene303;Dbxref=Genbank:WP_010930036.1;Name=WP_010930036.1;Note=Catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit G;protein_id=WP_010930036.1;transl_table=11 NZ_CP010961.1 RefSeq gene 310510 311583 . + . ID=gene304;Name=RD04_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01525;old_locus_tag=RD04_01515 NZ_CP010961.1 Protein Homology CDS 310510 311583 . + 0 ID=cds296;Parent=gene304;Dbxref=Genbank:WP_003813926.1;Name=WP_003813926.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit H;protein_id=WP_003813926.1;transl_table=11 NZ_CP010961.1 RefSeq gene 311605 312093 . + . ID=gene305;Name=RD04_RS01530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01530;old_locus_tag=RD04_01520 NZ_CP010961.1 Protein Homology CDS 311605 312093 . + 0 ID=cds297;Parent=gene305;Dbxref=Genbank:WP_003813924.1;Name=WP_003813924.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit I;protein_id=WP_003813924.1;transl_table=11 NZ_CP010961.1 RefSeq gene 312111 312758 . + . ID=gene306;Name=RD04_RS01535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01535;old_locus_tag=RD04_01525 NZ_CP010961.1 Protein Homology CDS 312111 312758 . + 0 ID=cds298;Parent=gene306;Dbxref=Genbank:WP_003813921.1;Name=WP_003813921.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_003813921.1;transl_table=11 NZ_CP010961.1 RefSeq gene 312755 313063 . + . ID=gene307;Name=RD04_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01540;old_locus_tag=RD04_01530 NZ_CP010961.1 Protein Homology CDS 312755 313063 . + 0 ID=cds299;Parent=gene307;Dbxref=Genbank:WP_003813920.1;Name=WP_003813920.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit K;protein_id=WP_003813920.1;transl_table=11 NZ_CP010961.1 RefSeq gene 313081 315093 . + . ID=gene308;Name=RD04_RS01545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01545;old_locus_tag=RD04_01535 NZ_CP010961.1 Protein Homology CDS 313081 315093 . + 0 ID=cds300;Parent=gene308;Dbxref=Genbank:WP_010930037.1;Name=WP_010930037.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit L;protein_id=WP_010930037.1;transl_table=11 NZ_CP010961.1 RefSeq gene 315090 316592 . + . ID=gene309;Name=RD04_RS01550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01550;old_locus_tag=RD04_01540 NZ_CP010961.1 Protein Homology CDS 315090 316592 . + 0 ID=cds301;Parent=gene309;Dbxref=Genbank:WP_019247436.1;Name=WP_019247436.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit M;protein_id=WP_019247436.1;transl_table=11 NZ_CP010961.1 RefSeq gene 316603 318087 . + . ID=gene310;Name=RD04_RS01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01555;old_locus_tag=RD04_01545 NZ_CP010961.1 Protein Homology CDS 316603 318087 . + 0 ID=cds302;Parent=gene310;Dbxref=Genbank:WP_003813916.1;Name=WP_003813916.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit N;protein_id=WP_003813916.1;transl_table=11 NZ_CP010961.1 RefSeq gene 318104 318433 . + . ID=gene311;Name=RD04_RS01560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01560;old_locus_tag=RD04_01550 NZ_CP010961.1 Protein Homology CDS 318104 318433 . + 0 ID=cds303;Parent=gene311;Dbxref=Genbank:WP_003813915.1;Name=WP_003813915.1;gbkey=CDS;product=membrane protein;protein_id=WP_003813915.1;transl_table=11 NZ_CP010961.1 RefSeq gene 318734 320965 . + . ID=gene312;Name=RD04_RS01565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01565;old_locus_tag=RD04_01555 NZ_CP010961.1 Protein Homology CDS 318734 320965 . + 0 ID=cds304;Parent=gene312;Dbxref=Genbank:WP_010930039.1;Name=WP_010930039.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_010930039.1;transl_table=11 NZ_CP010961.1 RefSeq gene 321177 323447 . + . ID=gene313;Name=RD04_RS01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01570;old_locus_tag=RD04_01560 NZ_CP010961.1 Protein Homology CDS 321177 323447 . + 0 ID=cds305;Parent=gene313;Dbxref=Genbank:WP_003813909.1;Name=WP_003813909.1;gbkey=CDS;product=ligand-gated channel;protein_id=WP_003813909.1;transl_table=11 NZ_CP010961.1 RefSeq gene 323560 324078 . + . ID=gene314;Name=RD04_RS01575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01575;old_locus_tag=RD04_01565 NZ_CP010961.1 Protein Homology CDS 323560 324078 . + 0 ID=cds306;Parent=gene314;Dbxref=Genbank:WP_010930041.1;Name=WP_010930041.1;gbkey=CDS;product=GNAT family acetyltransferase;protein_id=WP_010930041.1;transl_table=11 NZ_CP010961.1 RefSeq gene 324088 324864 . - . ID=gene315;Name=RD04_RS01580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01580;old_locus_tag=RD04_01570 NZ_CP010961.1 Protein Homology CDS 324088 324864 . - 0 ID=cds307;Parent=gene315;Dbxref=Genbank:WP_010930042.1;Name=WP_010930042.1;gbkey=CDS;product=3-ketoacyl-ACP reductase;protein_id=WP_010930042.1;transl_table=11 NZ_CP010961.1 RefSeq gene 324861 326585 . - . ID=gene316;Name=RD04_RS01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01585;old_locus_tag=RD04_01575 NZ_CP010961.1 Protein Homology CDS 324861 326585 . - 0 ID=cds308;Parent=gene316;Dbxref=Genbank:WP_033446247.1;Name=WP_033446247.1;Note=catalyzes the formation of 2-acetolactate from pyruvate%2C leucine sensitive%3B catalytic;gbkey=CDS;product=acetolactate synthase catalytic subunit;protein_id=WP_033446247.1;transl_table=11 NZ_CP010961.1 RefSeq gene 326711 327691 . - . ID=gene317;Name=RD04_RS01590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01590;old_locus_tag=RD04_01580 NZ_CP010961.1 Protein Homology CDS 326711 327691 . - 0 ID=cds309;Parent=gene317;Dbxref=Genbank:WP_010930044.1;Name=WP_010930044.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010930044.1;transl_table=11 NZ_CP010961.1 RefSeq gene 327829 328746 . + . ID=gene318;Name=RD04_RS01595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01595;old_locus_tag=RD04_01585 NZ_CP010961.1 Protein Homology CDS 327829 328746 . + 0 ID=cds310;Parent=gene318;Dbxref=Genbank:WP_010930045.1;Name=WP_010930045.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930045.1;transl_table=11 NZ_CP010961.1 RefSeq gene 328875 329735 . - . ID=gene319;Name=RD04_RS01600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01600;old_locus_tag=RD04_01590 NZ_CP010961.1 Protein Homology CDS 328875 329735 . - 0 ID=cds311;Parent=gene319;Dbxref=Genbank:WP_010930046.1;Name=WP_010930046.1;gbkey=CDS;product=phosphoserine phosphatase;protein_id=WP_010930046.1;transl_table=11 NZ_CP010961.1 RefSeq gene 329771 333226 . - . ID=gene320;Name=RD04_RS01605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01605;old_locus_tag=RD04_01595 NZ_CP010961.1 Protein Homology CDS 329771 333226 . - 0 ID=cds312;Parent=gene320;Dbxref=Genbank:WP_010926959.1;Name=WP_010926959.1;gbkey=CDS;product=transcription-repair coupling factor;protein_id=WP_010926959.1;transl_table=11 NZ_CP010961.1 RefSeq gene 333256 333939 . + . ID=gene321;Name=RD04_RS01610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01610;old_locus_tag=RD04_01600 NZ_CP010961.1 Protein Homology CDS 333256 333939 . + 0 ID=cds313;Parent=gene321;Dbxref=Genbank:WP_003813895.1;Name=WP_003813895.1;gbkey=CDS;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_003813895.1;transl_table=11 NZ_CP010961.1 RefSeq gene 333936 334424 . + . ID=gene322;Name=RD04_RS01615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01615;old_locus_tag=RD04_01605 NZ_CP010961.1 Protein Homology CDS 333936 334424 . + 0 ID=cds314;Parent=gene322;Dbxref=Genbank:WP_003813893.1;Name=WP_003813893.1;gbkey=CDS;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_003813893.1;transl_table=11 NZ_CP010961.1 RefSeq gene 334523 335473 . + . ID=gene323;Name=RD04_RS01620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01620;old_locus_tag=RD04_01610 NZ_CP010961.1 Protein Homology CDS 334523 335473 . + 0 ID=cds315;Parent=gene323;Dbxref=Genbank:WP_010930048.1;Name=WP_010930048.1;gbkey=CDS;product=transposase;protein_id=WP_010930048.1;transl_table=11 NZ_CP010961.1 RefSeq gene 335470 336489 . - . ID=gene324;Name=RD04_RS01625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01625;old_locus_tag=RD04_01615 NZ_CP010961.1 Protein Homology CDS 335470 336489 . - 0 ID=cds316;Parent=gene324;Dbxref=Genbank:WP_003813068.1;Name=WP_003813068.1;gbkey=CDS;product=fructose 1%2C6-bisphosphatase;protein_id=WP_003813068.1;transl_table=11 NZ_CP010961.1 RefSeq gene 336499 339207 . - . ID=gene325;Name=RD04_RS01630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01630;old_locus_tag=RD04_01620 NZ_CP010961.1 Protein Homology CDS 336499 339207 . - 0 ID=cds317;Parent=gene325;Dbxref=Genbank:WP_010930049.1;Name=WP_010930049.1;gbkey=CDS;product=aminopeptidase N;protein_id=WP_010930049.1;transl_table=11 NZ_CP010961.1 RefSeq gene 339355 340011 . + . ID=gene326;Name=RD04_RS01635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01635;old_locus_tag=RD04_01625 NZ_CP010961.1 Protein Homology CDS 339355 340011 . + 0 ID=cds318;Parent=gene326;Dbxref=Genbank:WP_010930050.1;Name=WP_010930050.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930050.1;transl_table=11 NZ_CP010961.1 RefSeq gene 340110 341060 . + . ID=gene327;Name=RD04_RS01640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01640;old_locus_tag=RD04_01630 NZ_CP010961.1 Protein Homology CDS 340110 341060 . + 0 ID=cds319;Parent=gene327;Dbxref=Genbank:WP_014486111.1;Name=WP_014486111.1;gbkey=CDS;product=integrase;protein_id=WP_014486111.1;transl_table=11 NZ_CP010961.1 RefSeq gene 341208 342101 . + . ID=gene328;Name=RD04_RS01645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01645;old_locus_tag=RD04_01635 NZ_CP010961.1 Protein Homology CDS 341208 342101 . + 0 ID=cds320;Parent=gene328;Dbxref=Genbank:WP_023998705.1;Name=WP_023998705.1;gbkey=CDS;product=mechanosensitive ion channel protein MscS;protein_id=WP_023998705.1;transl_table=11 NZ_CP010961.1 RefSeq gene 342301 343995 . + . ID=gene329;Name=RD04_RS01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01650;old_locus_tag=RD04_01640 NZ_CP010961.1 Protein Homology CDS 342301 343995 . + 0 ID=cds321;Parent=gene329;Dbxref=Genbank:WP_010930013.1;Name=WP_010930013.1;gbkey=CDS;product=acetolactate synthase;protein_id=WP_010930013.1;transl_table=11 NZ_CP010961.1 RefSeq gene 344030 344956 . + . ID=gene330;Name=RD04_RS01655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01655;old_locus_tag=RD04_01645 NZ_CP010961.1 Protein Homology CDS 344030 344956 . + 0 ID=cds322;Parent=gene330;Dbxref=Genbank:WP_010930012.1;Name=WP_010930012.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930012.1;transl_table=11 NZ_CP010961.1 RefSeq gene 345025 346122 . + . ID=gene331;Name=RD04_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01660;old_locus_tag=RD04_01650 NZ_CP010961.1 Protein Homology CDS 345025 346122 . + 0 ID=cds323;Parent=gene331;Dbxref=Genbank:WP_010930011.1;Name=WP_010930011.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930011.1;transl_table=11 NZ_CP010961.1 RefSeq gene 346141 347004 . + . ID=gene332;Name=RD04_RS01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01665;old_locus_tag=RD04_01655 NZ_CP010961.1 Protein Homology CDS 346141 347004 . + 0 ID=cds324;Parent=gene332;Dbxref=Genbank:WP_003818996.1;Name=WP_003818996.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003818996.1;transl_table=11 NZ_CP010961.1 RefSeq gene 347016 347798 . + . ID=gene333;Name=RD04_RS01670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01670;old_locus_tag=RD04_01660 NZ_CP010961.1 Protein Homology CDS 347016 347798 . + 0 ID=cds325;Parent=gene333;Dbxref=Genbank:WP_010930010.1;Name=WP_010930010.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930010.1;transl_table=11 NZ_CP010961.1 RefSeq gene 347795 348913 . + . ID=gene334;Name=RD04_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01675;old_locus_tag=RD04_01665 NZ_CP010961.1 Protein Homology CDS 347795 348913 . + 0 ID=cds326;Parent=gene334;Dbxref=Genbank:WP_004566042.1;Name=WP_004566042.1;gbkey=CDS;product=deacylase;protein_id=WP_004566042.1;transl_table=11 NZ_CP010961.1 RefSeq gene 348910 350442 . + . ID=gene335;Name=RD04_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01680;old_locus_tag=RD04_01670 NZ_CP010961.1 Protein Homology CDS 348910 350442 . + 0 ID=cds327;Parent=gene335;Dbxref=Genbank:WP_010930009.1;Name=WP_010930009.1;gbkey=CDS;product=acetyl-CoA synthetase;protein_id=WP_010930009.1;transl_table=11 NZ_CP010961.1 RefSeq gene 350483 351490 . + . ID=gene336;Name=RD04_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01685;old_locus_tag=RD04_01675 NZ_CP010961.1 Protein Homology CDS 350483 351490 . + 0 ID=cds328;Parent=gene336;Dbxref=Genbank:WP_003818991.1;Name=WP_003818991.1;gbkey=CDS;product=zinc-binding dehydrogenase;protein_id=WP_003818991.1;transl_table=11 NZ_CP010961.1 RefSeq gene 351722 352357 . + . ID=gene337;Name=RD04_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01690;old_locus_tag=RD04_01680 NZ_CP010961.1 Protein Homology CDS 351722 352357 . + 0 ID=cds329;Parent=gene337;Dbxref=Genbank:WP_047122816.1;Name=WP_047122816.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_047122816.1;transl_table=11 NZ_CP010961.1 RefSeq gene 352373 353395 . - . ID=gene338;Name=RD04_RS01695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01695;old_locus_tag=RD04_01685 NZ_CP010961.1 Protein Homology CDS 352373 353395 . - 0 ID=cds330;Parent=gene338;Dbxref=Genbank:WP_010930007.1;Name=WP_010930007.1;gbkey=CDS;product=autotransporter;protein_id=WP_010930007.1;transl_table=11 NZ_CP010961.1 RefSeq gene 353712 354446 . - . ID=gene339;Name=RD04_RS01700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01700;old_locus_tag=RD04_01690 NZ_CP010961.1 Protein Homology CDS 353712 354446 . - 0 ID=cds331;Parent=gene339;Dbxref=Genbank:WP_010930006.1;Name=WP_010930006.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010930006.1;transl_table=11 NZ_CP010961.1 RefSeq gene 354531 356275 . + . ID=gene340;Name=RD04_RS01705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS01705;old_locus_tag=RD04_01695;pseudo=true NZ_CP010961.1 Protein Homology CDS 354531 356275 . + 0 ID=cds332;Parent=gene340;Note=catalyzes the formation of 2-acetolactate from pyruvate%2C leucine sensitive%3B catalytic%3B frameshifted;gbkey=CDS;product=acetolactate synthase catalytic subunit;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 356272 357024 . + . ID=gene341;Name=RD04_RS01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01710;old_locus_tag=RD04_01700 NZ_CP010961.1 Protein Homology CDS 356272 357024 . + 0 ID=cds333;Parent=gene341;Dbxref=Genbank:WP_010930004.1;Name=WP_010930004.1;gbkey=CDS;product=acetoacetyl-CoA reductase;protein_id=WP_010930004.1;transl_table=11 NZ_CP010961.1 RefSeq gene 357069 358025 . + . ID=gene342;Name=RD04_RS01715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01715;old_locus_tag=RD04_01705 NZ_CP010961.1 Protein Homology CDS 357069 358025 . + 0 ID=cds334;Parent=gene342;Dbxref=Genbank:WP_010930003.1;Name=WP_010930003.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930003.1;transl_table=11 NZ_CP010961.1 RefSeq gene 358114 358680 . + . ID=gene343;Name=RD04_RS01720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01720;old_locus_tag=RD04_01710 NZ_CP010961.1 Protein Homology CDS 358114 358680 . + 0 ID=cds335;Parent=gene343;Dbxref=Genbank:WP_003818983.1;Name=WP_003818983.1;gbkey=CDS;product=membrane protein;protein_id=WP_003818983.1;transl_table=11 NZ_CP010961.1 RefSeq gene 358688 359548 . - . ID=gene344;Name=RD04_RS01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01725;old_locus_tag=RD04_01715 NZ_CP010961.1 Protein Homology CDS 358688 359548 . - 0 ID=cds336;Parent=gene344;Dbxref=Genbank:WP_010930002.1;Name=WP_010930002.1;gbkey=CDS;product=aminotransferase;protein_id=WP_010930002.1;transl_table=11 NZ_CP010961.1 RefSeq gene 359578 360306 . - . ID=gene345;Name=artP;gbkey=Gene;gene=artP;gene_biotype=protein_coding;locus_tag=RD04_RS01730;old_locus_tag=RD04_01720 NZ_CP010961.1 Protein Homology CDS 359578 360306 . - 0 ID=cds337;Parent=gene345;Dbxref=Genbank:WP_020699739.1;Name=WP_020699739.1;Note=With ArtMQJI transports arginine across the inner membrane;gbkey=CDS;gene=artP;product=methionine ABC transporter ATP-binding protein;protein_id=WP_020699739.1;transl_table=11 NZ_CP010961.1 RefSeq gene 360338 361021 . - . ID=gene346;Name=RD04_RS01735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01735;old_locus_tag=RD04_01725 NZ_CP010961.1 Protein Homology CDS 360338 361021 . - 0 ID=cds338;Parent=gene346;Dbxref=Genbank:WP_003807497.1;Name=WP_003807497.1;Note=with GltJLPS and GadC for glutamate and GltJLP%2C DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate;gbkey=CDS;product=glutamate/aspartate transporter permease GltK;protein_id=WP_003807497.1;transl_table=11 NZ_CP010961.1 RefSeq gene 361219 361452 . + . ID=gene347;Name=RD04_RS01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01740;old_locus_tag=RD04_01730 NZ_CP010961.1 GeneMarkS+ CDS 361219 361452 . + 0 ID=cds339;Parent=gene347;Dbxref=Genbank:WP_033446235.1;Name=WP_033446235.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 361859 362773 . - . ID=gene348;Name=RD04_RS01745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01745;old_locus_tag=RD04_01735 NZ_CP010961.1 Protein Homology CDS 361859 362773 . - 0 ID=cds340;Parent=gene348;Dbxref=Genbank:WP_010930000.1;Name=WP_010930000.1;gbkey=CDS;product=ABC transporter;protein_id=WP_010930000.1;transl_table=11 NZ_CP010961.1 RefSeq gene 362838 363746 . - . ID=gene349;Name=RD04_RS01750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01750;old_locus_tag=RD04_01740 NZ_CP010961.1 Protein Homology CDS 362838 363746 . - 0 ID=cds341;Parent=gene349;Dbxref=Genbank:WP_010929999.1;Name=WP_010929999.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010929999.1;transl_table=11 NZ_CP010961.1 RefSeq gene 363837 365261 . - . ID=gene350;Name=RD04_RS01755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01755;old_locus_tag=RD04_01745 NZ_CP010961.1 Protein Homology CDS 363837 365261 . - 0 ID=cds342;Parent=gene350;Dbxref=Genbank:WP_010929998.1;Name=WP_010929998.1;gbkey=CDS;product=protein CyaE;protein_id=WP_010929998.1;transl_table=11 NZ_CP010961.1 RefSeq gene 365263 366585 . - . ID=gene351;Name=RD04_RS01760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01760;old_locus_tag=RD04_01750 NZ_CP010961.1 Protein Homology CDS 365263 366585 . - 0 ID=cds343;Parent=gene351;Dbxref=Genbank:WP_010929997.1;Name=WP_010929997.1;gbkey=CDS;product=protein CyaD;protein_id=WP_010929997.1;transl_table=11 NZ_CP010961.1 RefSeq gene 366582 368720 . - . ID=gene352;Name=RD04_RS01765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01765;old_locus_tag=RD04_01755 NZ_CP010961.1 Protein Homology CDS 366582 368720 . - 0 ID=cds344;Parent=gene352;Dbxref=Genbank:WP_010929996.1;Name=WP_010929996.1;gbkey=CDS;product=cyclolysin secretion/processing ATP-binding protein CyaB;protein_id=WP_010929996.1;transl_table=11 NZ_CP010961.1 RefSeq gene 368798 374020 . - . ID=gene353;Name=RD04_RS01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01770;old_locus_tag=RD04_01760 NZ_CP010961.1 Protein Homology CDS 368798 374020 . - 0 ID=cds345;Parent=gene353;Dbxref=Genbank:WP_014905479.1;Name=WP_014905479.1;gbkey=CDS;product=hemolysin;protein_id=WP_014905479.1;transl_table=11 NZ_CP010961.1 RefSeq gene 374105 374284 . - . ID=gene354;Name=RD04_RS01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01775;old_locus_tag=RD04_01765 NZ_CP010961.1 Protein Homology CDS 374105 374284 . - 0 ID=cds346;Parent=gene354;Dbxref=Genbank:WP_019248053.1;Name=WP_019248053.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248053.1;transl_table=11 NZ_CP010961.1 RefSeq gene 374397 374954 . + . ID=gene355;Name=RD04_RS01780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01780;old_locus_tag=RD04_01770 NZ_CP010961.1 Protein Homology CDS 374397 374954 . + 0 ID=cds347;Parent=gene355;Dbxref=Genbank:WP_010929994.1;Name=WP_010929994.1;gbkey=CDS;product=cyclolysin-activating lysine-acyltransferase CyaC;protein_id=WP_010929994.1;transl_table=11 NZ_CP010961.1 RefSeq gene 374970 376451 . - . ID=gene356;Name=gabD;gbkey=Gene;gene=gabD;gene_biotype=protein_coding;locus_tag=RD04_RS01785;old_locus_tag=RD04_01775 NZ_CP010961.1 Protein Homology CDS 374970 376451 . - 0 ID=cds348;Parent=gene356;Dbxref=Genbank:WP_010929993.1;Name=WP_010929993.1;Note=catalyzes the formation of succinate from succinate semialdehyde%3B NADP dependent;gbkey=CDS;gene=gabD;product=NAD-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_010929993.1;transl_table=11 NZ_CP010961.1 RefSeq gene 377412 378359 . - . ID=gene357;Name=RD04_RS01790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS01790;old_locus_tag=RD04_01780;partial=true;pseudo=true;start_range=.,377412 NZ_CP010961.1 Protein Homology CDS 377412 378359 . - 0 ID=cds349;Parent=gene357;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=integrase;pseudo=true;start_range=.,377412;transl_table=11 NZ_CP010961.1 RefSeq gene 378622 379959 . - . ID=gene358;Name=RD04_RS01795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01795;old_locus_tag=RD04_01785 NZ_CP010961.1 Protein Homology CDS 378622 379959 . - 0 ID=cds350;Parent=gene358;Dbxref=Genbank:WP_010929992.1;Name=WP_010929992.1;gbkey=CDS;product=amino acid deaminase;protein_id=WP_010929992.1;transl_table=11 NZ_CP010961.1 RefSeq gene 379994 381991 . - . ID=gene359;Name=RD04_RS01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01800;old_locus_tag=RD04_01790 NZ_CP010961.1 Protein Homology CDS 379994 381991 . - 0 ID=cds351;Parent=gene359;Dbxref=Genbank:WP_010929991.1;Name=WP_010929991.1;gbkey=CDS;product=hydantoin utilization protein B;protein_id=WP_010929991.1;transl_table=11 NZ_CP010961.1 RefSeq gene 382009 384057 . - . ID=gene360;Name=RD04_RS01805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01805;old_locus_tag=RD04_01795 NZ_CP010961.1 Protein Homology CDS 382009 384057 . - 0 ID=cds352;Parent=gene360;Dbxref=Genbank:WP_010929990.1;Name=WP_010929990.1;gbkey=CDS;product=hydantoinase;protein_id=WP_010929990.1;transl_table=11 NZ_CP010961.1 RefSeq gene 384188 385054 . + . ID=gene361;Name=RD04_RS01810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01810;old_locus_tag=RD04_01800 NZ_CP010961.1 Protein Homology CDS 384188 385054 . + 0 ID=cds353;Parent=gene361;Dbxref=Genbank:WP_010929989.1;Name=WP_010929989.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010929989.1;transl_table=11 NZ_CP010961.1 RefSeq gene 385200 385276 . - . ID=gene362;Name=RD04_RS01815;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS01815;old_locus_tag=RD04_01805 NZ_CP010961.1 tRNAscan-SE tRNA 385200 385276 . - . ID=rna8;Parent=gene362;anticodon=(pos:complement(385240..385242));gbkey=tRNA;product=tRNA-Pro NZ_CP010961.1 tRNAscan-SE exon 385200 385276 . - . ID=id10;Parent=rna8;anticodon=(pos:complement(385240..385242));gbkey=tRNA;product=tRNA-Pro NZ_CP010961.1 RefSeq gene 385323 386288 . - . ID=gene363;Name=RD04_RS01820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01820;old_locus_tag=RD04_01810 NZ_CP010961.1 Protein Homology CDS 385323 386288 . - 0 ID=cds354;Parent=gene363;Dbxref=Genbank:WP_010929988.1;Name=WP_010929988.1;gbkey=CDS;product=octaprenyl diphosphate synthase;protein_id=WP_010929988.1;transl_table=11 NZ_CP010961.1 RefSeq gene 386403 387551 . - . ID=gene364;Name=RD04_RS01825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01825;old_locus_tag=RD04_01815 NZ_CP010961.1 Protein Homology CDS 386403 387551 . - 0 ID=cds355;Parent=gene364;Dbxref=Genbank:WP_010929987.1;Name=WP_010929987.1;gbkey=CDS;product=fumarylacetoacetate hydrolase;protein_id=WP_010929987.1;transl_table=11 NZ_CP010961.1 RefSeq gene 387976 388287 . + . ID=gene365;Name=RD04_RS01830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01830;old_locus_tag=RD04_01820 NZ_CP010961.1 Protein Homology CDS 387976 388287 . + 0 ID=cds356;Parent=gene365;Dbxref=Genbank:WP_003807462.1;Name=WP_003807462.1;gbkey=CDS;product=50S ribosomal protein L21;protein_id=WP_003807462.1;transl_table=11 NZ_CP010961.1 RefSeq gene 388321 388581 . + . ID=gene366;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=RD04_RS01835;old_locus_tag=RD04_01825 NZ_CP010961.1 Protein Homology CDS 388321 388581 . + 0 ID=cds357;Parent=gene366;Dbxref=Genbank:WP_003807460.1;Name=WP_003807460.1;Note=involved in the peptidyltransferase reaction during translation;gbkey=CDS;gene=rpmA;product=50S ribosomal protein L27;protein_id=WP_003807460.1;transl_table=11 NZ_CP010961.1 RefSeq gene 388731 389864 . + . ID=gene367;Name=RD04_RS01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01840;old_locus_tag=RD04_01830 NZ_CP010961.1 Protein Homology CDS 388731 389864 . + 0 ID=cds358;Parent=gene367;Dbxref=Genbank:WP_003807459.1;Name=WP_003807459.1;gbkey=CDS;product=GTPase ObgE;protein_id=WP_003807459.1;transl_table=11 NZ_CP010961.1 RefSeq gene 389935 391071 . + . ID=gene368;Name=RD04_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01845;old_locus_tag=RD04_01835 NZ_CP010961.1 Protein Homology CDS 389935 391071 . + 0 ID=cds359;Parent=gene368;Dbxref=Genbank:WP_003807457.1;Name=WP_003807457.1;Note=catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis;gbkey=CDS;product=glutamate 5-kinase;protein_id=WP_003807457.1;transl_table=11 NZ_CP010961.1 RefSeq gene 391237 392031 . - . ID=gene369;Name=RD04_RS01850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01850;old_locus_tag=RD04_01840 NZ_CP010961.1 Protein Homology CDS 391237 392031 . - 0 ID=cds360;Parent=gene369;Dbxref=Genbank:WP_010925762.1;Name=WP_010925762.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010925762.1;transl_table=11 NZ_CP010961.1 RefSeq gene 392094 392537 . + . ID=gene370;Name=RD04_RS01855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01855;old_locus_tag=RD04_01845 NZ_CP010961.1 Protein Homology CDS 392094 392537 . + 0 ID=cds361;Parent=gene370;Dbxref=Genbank:WP_003807452.1;Name=WP_003807452.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003807452.1;transl_table=11 NZ_CP010961.1 RefSeq gene 392653 393603 . - . ID=gene371;Name=RD04_RS01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01860;old_locus_tag=RD04_01850 NZ_CP010961.1 Protein Homology CDS 392653 393603 . - 0 ID=cds362;Parent=gene371;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 393786 394133 . + . ID=gene372;Name=RD04_RS01865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01865;old_locus_tag=RD04_01855 NZ_CP010961.1 Protein Homology CDS 393786 394133 . + 0 ID=cds363;Parent=gene372;Dbxref=Genbank:WP_033446244.1;Name=WP_033446244.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_033446244.1;transl_table=11 NZ_CP010961.1 RefSeq gene 394206 396401 . + . ID=gene373;Name=RD04_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01870;old_locus_tag=RD04_01860 NZ_CP010961.1 Protein Homology CDS 394206 396401 . + 0 ID=cds364;Parent=gene373;Dbxref=Genbank:WP_010929984.1;Name=WP_010929984.1;gbkey=CDS;product=DNA methylase;protein_id=WP_010929984.1;transl_table=11 NZ_CP010961.1 RefSeq gene 396623 397573 . + . ID=gene374;Name=RD04_RS01875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01875;old_locus_tag=RD04_01865 NZ_CP010961.1 Protein Homology CDS 396623 397573 . + 0 ID=cds365;Parent=gene374;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 397641 398111 . + . ID=gene375;Name=RD04_RS01880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01880;old_locus_tag=RD04_01870 NZ_CP010961.1 GeneMarkS+ CDS 397641 398111 . + 0 ID=cds366;Parent=gene375;Dbxref=Genbank:WP_033446394.1;Name=WP_033446394.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446394.1;transl_table=11 NZ_CP010961.1 RefSeq gene 398189 399160 . + . ID=gene376;Name=RD04_RS01885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01885;old_locus_tag=RD04_01875 NZ_CP010961.1 Protein Homology CDS 398189 399160 . + 0 ID=cds367;Parent=gene376;Dbxref=Genbank:WP_003814467.1;Name=WP_003814467.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814467.1;transl_table=11 NZ_CP010961.1 RefSeq gene 399280 401724 . + . ID=gene377;Name=RD04_RS01890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01890;old_locus_tag=RD04_01880 NZ_CP010961.1 Protein Homology CDS 399280 401724 . + 0 ID=cds368;Parent=gene377;Dbxref=Genbank:WP_010929983.1;Name=WP_010929983.1;gbkey=CDS;product=ligand-gated channel;protein_id=WP_010929983.1;transl_table=11 NZ_CP010961.1 RefSeq gene 401740 402330 . - . ID=gene378;Name=RD04_RS01895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01895;old_locus_tag=RD04_01885 NZ_CP010961.1 Protein Homology CDS 401740 402330 . - 0 ID=cds369;Parent=gene378;Dbxref=Genbank:WP_010929982.1;Name=WP_010929982.1;gbkey=CDS;product=polyisoprenoid-binding protein;protein_id=WP_010929982.1;transl_table=11 NZ_CP010961.1 RefSeq gene 402377 402532 . - . ID=gene379;Name=RD04_RS01900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01900;old_locus_tag=RD04_01890 NZ_CP010961.1 Protein Homology CDS 402377 402532 . - 0 ID=cds370;Parent=gene379;Dbxref=Genbank:WP_010929981.1;Name=WP_010929981.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929981.1;transl_table=11 NZ_CP010961.1 RefSeq gene 402574 403476 . - . ID=gene380;Name=RD04_RS01905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01905;old_locus_tag=RD04_01895 NZ_CP010961.1 GeneMarkS+ CDS 402574 403476 . - 0 ID=cds371;Parent=gene380;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 403682 404947 . - . ID=gene381;Name=RD04_RS01910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01910;old_locus_tag=RD04_01900 NZ_CP010961.1 Protein Homology CDS 403682 404947 . - 0 ID=cds372;Parent=gene381;Dbxref=Genbank:WP_003814462.1;Name=WP_003814462.1;gbkey=CDS;product=saccharopine dehydrogenase;protein_id=WP_003814462.1;transl_table=11 NZ_CP010961.1 RefSeq gene 404981 406078 . - . ID=gene382;Name=RD04_RS01915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01915;old_locus_tag=RD04_01905 NZ_CP010961.1 Protein Homology CDS 404981 406078 . - 0 ID=cds373;Parent=gene382;Dbxref=Genbank:WP_003814461.1;Name=WP_003814461.1;gbkey=CDS;product=carboxynorspermidine decarboxylase;protein_id=WP_003814461.1;transl_table=11 NZ_CP010961.1 RefSeq gene 406733 407683 . + . ID=gene383;Name=RD04_RS01920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01920;old_locus_tag=RD04_01910 NZ_CP010961.1 Protein Homology CDS 406733 407683 . + 0 ID=cds374;Parent=gene383;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 407684 408253 . + . ID=gene384;Name=RD04_RS01925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01925;old_locus_tag=RD04_01915 NZ_CP010961.1 Protein Homology CDS 407684 408253 . + 0 ID=cds375;Parent=gene384;Dbxref=Genbank:WP_003814459.1;Name=WP_003814459.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003814459.1;transl_table=11 NZ_CP010961.1 RefSeq gene 408321 409136 . - . ID=gene385;Name=RD04_RS01930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01930;old_locus_tag=RD04_01920 NZ_CP010961.1 Protein Homology CDS 408321 409136 . - 0 ID=cds376;Parent=gene385;Dbxref=Genbank:WP_010929980.1;Name=WP_010929980.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010929980.1;transl_table=11 NZ_CP010961.1 RefSeq gene 409303 410922 . + . ID=gene386;Name=RD04_RS01935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01935;old_locus_tag=RD04_01925 NZ_CP010961.1 Protein Homology CDS 409303 410922 . + 0 ID=cds377;Parent=gene386;Dbxref=Genbank:WP_010929979.1;Name=WP_010929979.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010929979.1;transl_table=11 NZ_CP010961.1 RefSeq gene 411001 411942 . + . ID=gene387;Name=RD04_RS01940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01940;old_locus_tag=RD04_01930 NZ_CP010961.1 Protein Homology CDS 411001 411942 . + 0 ID=cds378;Parent=gene387;Dbxref=Genbank:WP_010929978.1;Name=WP_010929978.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010929978.1;transl_table=11 NZ_CP010961.1 RefSeq gene 411942 412826 . + . ID=gene388;Name=RD04_RS01945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01945;old_locus_tag=RD04_01935 NZ_CP010961.1 Protein Homology CDS 411942 412826 . + 0 ID=cds379;Parent=gene388;Dbxref=Genbank:WP_010929977.1;Name=WP_010929977.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010929977.1;transl_table=11 NZ_CP010961.1 RefSeq gene 412830 414482 . + . ID=gene389;Name=RD04_RS01950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01950;old_locus_tag=RD04_01940 NZ_CP010961.1 Protein Homology CDS 412830 414482 . + 0 ID=cds380;Parent=gene389;Dbxref=Genbank:WP_010927038.1;Name=WP_010927038.1;Note=with YejAEF is involved in resistance to microcin C;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010927038.1;transl_table=11 NZ_CP010961.1 RefSeq gene 414522 415919 . + . ID=gene390;Name=RD04_RS01955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01955;old_locus_tag=RD04_01945 NZ_CP010961.1 Protein Homology CDS 414522 415919 . + 0 ID=cds381;Parent=gene390;Dbxref=Genbank:WP_010929976.1;Name=WP_010929976.1;Note=catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia;gbkey=CDS;product=amidase;protein_id=WP_010929976.1;transl_table=11 NZ_CP010961.1 RefSeq gene 415961 417340 . + . ID=gene391;Name=RD04_RS01960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01960;old_locus_tag=RD04_01950 NZ_CP010961.1 Protein Homology CDS 415961 417340 . + 0 ID=cds382;Parent=gene391;Dbxref=Genbank:WP_019247242.1;Name=WP_019247242.1;gbkey=CDS;product=taurine--pyruvate aminotransferase;protein_id=WP_019247242.1;transl_table=11 NZ_CP010961.1 RefSeq gene 417380 417598 . - . ID=gene392;Name=RD04_RS01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01965;old_locus_tag=RD04_01955 NZ_CP010961.1 Protein Homology CDS 417380 417598 . - 0 ID=cds383;Parent=gene392;Dbxref=Genbank:WP_003814443.1;Name=WP_003814443.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814443.1;transl_table=11 NZ_CP010961.1 RefSeq gene 417939 418811 . + . ID=gene393;Name=RD04_RS01970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01970;old_locus_tag=RD04_01960 NZ_CP010961.1 Protein Homology CDS 417939 418811 . + 0 ID=cds384;Parent=gene393;Dbxref=Genbank:WP_003814441.1;Name=WP_003814441.1;gbkey=CDS;product=carboxyvinyl-carboxyphosphonate phosphorylmutase;protein_id=WP_003814441.1;transl_table=11 NZ_CP010961.1 RefSeq gene 418971 419921 . + . ID=gene394;Name=RD04_RS01975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01975;old_locus_tag=RD04_01965 NZ_CP010961.1 Protein Homology CDS 418971 419921 . + 0 ID=cds385;Parent=gene394;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 420168 420629 . + . ID=gene395;Name=RD04_RS01980;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS01980;old_locus_tag=RD04_01970;partial=true;pseudo=true;start_range=.,420168 NZ_CP010961.1 Protein Homology CDS 420168 420629 . + 0 ID=cds386;Parent=gene395;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,420168;transl_table=11 NZ_CP010961.1 RefSeq gene 420653 421030 . + . ID=gene396;Name=RD04_RS01985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01985;old_locus_tag=RD04_01975 NZ_CP010961.1 Protein Homology CDS 420653 421030 . + 0 ID=cds387;Parent=gene396;Dbxref=Genbank:WP_003814437.1;Name=WP_003814437.1;gbkey=CDS;product=4a-hydroxytetrahydrobiopterin dehydratase;protein_id=WP_003814437.1;transl_table=11 NZ_CP010961.1 RefSeq gene 421015 421716 . - . ID=gene397;Name=RD04_RS01990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01990;old_locus_tag=RD04_01980 NZ_CP010961.1 Protein Homology CDS 421015 421716 . - 0 ID=cds388;Parent=gene397;Dbxref=Genbank:WP_003814436.1;Name=WP_003814436.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814436.1;transl_table=11 NZ_CP010961.1 RefSeq gene 421860 422552 . - . ID=gene398;Name=RD04_RS01995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS01995;old_locus_tag=RD04_01985 NZ_CP010961.1 Protein Homology CDS 421860 422552 . - 0 ID=cds389;Parent=gene398;Dbxref=Genbank:WP_010931409.1;Name=WP_010931409.1;gbkey=CDS;product=mannose-1-phosphate guanylyltransferase;protein_id=WP_010931409.1;transl_table=11 NZ_CP010961.1 RefSeq gene 422552 423592 . - . ID=gene399;Name=RD04_RS02000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02000;old_locus_tag=RD04_01990 NZ_CP010961.1 Protein Homology CDS 422552 423592 . - 0 ID=cds390;Parent=gene399;Dbxref=Genbank:WP_023852735.1;Name=WP_023852735.1;gbkey=CDS;product=phosphotransferase enzyme family protein;protein_id=WP_023852735.1;transl_table=11 NZ_CP010961.1 RefSeq gene 423771 426137 . + . ID=gene400;Name=RD04_RS02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02005;old_locus_tag=RD04_01995 NZ_CP010961.1 Protein Homology CDS 423771 426137 . + 0 ID=cds391;Parent=gene400;Dbxref=Genbank:WP_033446130.1;Name=WP_033446130.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_033446130.1;transl_table=11 NZ_CP010961.1 RefSeq gene 426134 427693 . + . ID=gene401;Name=RD04_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02010;old_locus_tag=RD04_02000 NZ_CP010961.1 Protein Homology CDS 426134 427693 . + 0 ID=cds392;Parent=gene401;Dbxref=Genbank:WP_010931412.1;Name=WP_010931412.1;gbkey=CDS;product=chaperone SurA;protein_id=WP_010931412.1;transl_table=11 NZ_CP010961.1 RefSeq gene 427718 428515 . + . ID=gene402;Name=RD04_RS02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02015;old_locus_tag=RD04_02005 NZ_CP010961.1 Protein Homology CDS 427718 428515 . + 0 ID=cds393;Parent=gene402;Dbxref=Genbank:WP_010931413.1;Name=WP_010931413.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase A;protein_id=WP_010931413.1;transl_table=11 NZ_CP010961.1 RefSeq gene 428547 429692 . - . ID=gene403;Name=RD04_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02020;old_locus_tag=RD04_02010 NZ_CP010961.1 Protein Homology CDS 428547 429692 . - 0 ID=cds394;Parent=gene403;Dbxref=Genbank:WP_010931414.1;Name=WP_010931414.1;gbkey=CDS;product=glycerate kinase;protein_id=WP_010931414.1;transl_table=11 NZ_CP010961.1 RefSeq gene 429797 431239 . + . ID=gene404;Name=RD04_RS02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02025;old_locus_tag=RD04_02015 NZ_CP010961.1 Protein Homology CDS 429797 431239 . + 0 ID=cds395;Parent=gene404;Dbxref=Genbank:WP_003814419.1;Name=WP_003814419.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=pyruvate kinase;protein_id=WP_003814419.1;transl_table=11 NZ_CP010961.1 RefSeq gene 431242 432471 . - . ID=gene405;Name=RD04_RS02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02030;old_locus_tag=RD04_02020 NZ_CP010961.1 Protein Homology CDS 431242 432471 . - 0 ID=cds396;Parent=gene405;Dbxref=Genbank:WP_010929184.1;Name=WP_010929184.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929184.1;transl_table=11 NZ_CP010961.1 RefSeq gene 432680 434611 . + . ID=gene406;Name=fadE;end_range=434611,.;gbkey=Gene;gene=fadE;gene_biotype=pseudogene;locus_tag=RD04_RS02035;old_locus_tag=RD04_02025;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 432680 434611 . + 0 ID=cds397;Parent=gene406;Note=functions in fatty acid oxidation%3B converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA%3B incomplete%3B partial in the middle of a contig%3B missing stop;end_range=434611,.;gbkey=CDS;gene=fadE;partial=true;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 434609 435511 . - . ID=gene407;Name=RD04_RS02040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02040;old_locus_tag=RD04_02030 NZ_CP010961.1 GeneMarkS+ CDS 434609 435511 . - 0 ID=cds398;Parent=gene407;Dbxref=Genbank:WP_039250369.1;Name=WP_039250369.1;gbkey=CDS;product=integrase;protein_id=WP_039250369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 435658 436684 . - . ID=gene408;Name=RD04_RS02045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS02045;old_locus_tag=RD04_02035;partial=true;pseudo=true;start_range=.,435658 NZ_CP010961.1 Protein Homology CDS 435658 436684 . - 0 ID=cds399;Parent=gene408;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=gamma-glutamyltransferase;pseudo=true;start_range=.,435658;transl_table=11 NZ_CP010961.1 RefSeq gene 436689 437246 . - . ID=gene409;Name=RD04_RS02050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02050;old_locus_tag=RD04_02040 NZ_CP010961.1 Protein Homology CDS 436689 437246 . - 0 ID=cds400;Parent=gene409;Dbxref=Genbank:WP_019247922.1;Name=WP_019247922.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247922.1;transl_table=11 NZ_CP010961.1 RefSeq gene 437222 437572 . - . ID=gene410;Name=RD04_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02055;old_locus_tag=RD04_02045 NZ_CP010961.1 Protein Homology CDS 437222 437572 . - 0 ID=cds401;Parent=gene410;Dbxref=Genbank:WP_019247923.1;Name=WP_019247923.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247923.1;transl_table=11 NZ_CP010961.1 RefSeq gene 437741 438535 . - . ID=gene411;Name=RD04_RS02060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02060;old_locus_tag=RD04_02050 NZ_CP010961.1 Protein Homology CDS 437741 438535 . - 0 ID=cds402;Parent=gene411;Dbxref=Genbank:WP_003814657.1;Name=WP_003814657.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003814657.1;transl_table=11 NZ_CP010961.1 RefSeq gene 438532 439581 . - . ID=gene412;Name=RD04_RS02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02065;old_locus_tag=RD04_02055 NZ_CP010961.1 Protein Homology CDS 438532 439581 . - 0 ID=cds403;Parent=gene412;Dbxref=Genbank:WP_010931416.1;Name=WP_010931416.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931416.1;transl_table=11 NZ_CP010961.1 RefSeq gene 439581 440270 . - . ID=gene413;Name=RD04_RS02070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02070;old_locus_tag=RD04_02060 NZ_CP010961.1 Protein Homology CDS 439581 440270 . - 0 ID=cds404;Parent=gene413;Dbxref=Genbank:WP_003814652.1;Name=WP_003814652.1;gbkey=CDS;product=tol-pal system protein YbgF;protein_id=WP_003814652.1;transl_table=11 NZ_CP010961.1 RefSeq gene 440357 440854 . - . ID=gene414;Name=RD04_RS02075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02075;old_locus_tag=RD04_02065 NZ_CP010961.1 Protein Homology CDS 440357 440854 . - 0 ID=cds405;Parent=gene414;Dbxref=Genbank:WP_003814650.1;Name=WP_003814650.1;gbkey=CDS;product=peptidoglycan-associated lipoprotein;protein_id=WP_003814650.1;transl_table=11 NZ_CP010961.1 RefSeq gene 440886 442202 . - . ID=gene415;Name=RD04_RS02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02080;old_locus_tag=RD04_02070 NZ_CP010961.1 Protein Homology CDS 440886 442202 . - 0 ID=cds406;Parent=gene415;Dbxref=Genbank:WP_010931417.1;Name=WP_010931417.1;gbkey=CDS;product=protein TolB;protein_id=WP_010931417.1;transl_table=11 NZ_CP010961.1 RefSeq gene 442219 443193 . - . ID=gene416;Name=RD04_RS02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02085;old_locus_tag=RD04_02075 NZ_CP010961.1 Protein Homology CDS 442219 443193 . - 0 ID=cds407;Parent=gene416;Dbxref=Genbank:WP_010931418.1;Name=WP_010931418.1;gbkey=CDS;product=protein TolA;protein_id=WP_010931418.1;transl_table=11 NZ_CP010961.1 RefSeq gene 443230 443688 . - . ID=gene417;Name=RD04_RS02090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02090;old_locus_tag=RD04_02080 NZ_CP010961.1 Protein Homology CDS 443230 443688 . - 0 ID=cds408;Parent=gene417;Dbxref=Genbank:WP_003814643.1;Name=WP_003814643.1;gbkey=CDS;product=protein TolR;protein_id=WP_003814643.1;transl_table=11 NZ_CP010961.1 RefSeq gene 443688 444368 . - . ID=gene418;Name=RD04_RS02095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02095;old_locus_tag=RD04_02085 NZ_CP010961.1 Protein Homology CDS 443688 444368 . - 0 ID=cds409;Parent=gene418;Dbxref=Genbank:WP_003814641.1;Name=WP_003814641.1;gbkey=CDS;product=protein TolQ;protein_id=WP_003814641.1;transl_table=11 NZ_CP010961.1 RefSeq gene 444371 444799 . - . ID=gene419;Name=RD04_RS02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02100;old_locus_tag=RD04_02090 NZ_CP010961.1 Protein Homology CDS 444371 444799 . - 0 ID=cds410;Parent=gene419;Dbxref=Genbank:WP_010931419.1;Name=WP_010931419.1;gbkey=CDS;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_010931419.1;transl_table=11 NZ_CP010961.1 RefSeq gene 444852 446582 . - . ID=gene420;Name=RD04_RS02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02105;old_locus_tag=RD04_02095 NZ_CP010961.1 Protein Homology CDS 444852 446582 . - 0 ID=cds411;Parent=gene420;Dbxref=Genbank:WP_003814636.1;Name=WP_003814636.1;Note=catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro);gbkey=CDS;product=proline--tRNA ligase;protein_id=WP_003814636.1;transl_table=11 NZ_CP010961.1 RefSeq gene 446648 447220 . + . ID=gene421;Name=RD04_RS02110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02110;old_locus_tag=RD04_02100 NZ_CP010961.1 Protein Homology CDS 446648 447220 . + 0 ID=cds412;Parent=gene421;Dbxref=Genbank:WP_003814635.1;Name=WP_003814635.1;gbkey=CDS;product=RNA pyrophosphohydrolase;protein_id=WP_003814635.1;transl_table=11 NZ_CP010961.1 RefSeq gene 447201 447887 . + . ID=gene422;Name=RD04_RS02115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02115;old_locus_tag=RD04_02105 NZ_CP010961.1 Protein Homology CDS 447201 447887 . + 0 ID=cds413;Parent=gene422;Dbxref=Genbank:WP_010931420.1;Name=WP_010931420.1;Note=transcriptional activator of tricarboxylate transport system genes;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_010931420.1;transl_table=11 NZ_CP010961.1 RefSeq gene 447947 448315 . + . ID=gene423;Name=RD04_RS02120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02120;old_locus_tag=RD04_02110 NZ_CP010961.1 GeneMarkS+ CDS 447947 448315 . + 0 ID=cds414;Parent=gene423;Dbxref=Genbank:WP_019248563.1;Name=WP_019248563.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248563.1;transl_table=11 NZ_CP010961.1 RefSeq gene 448243 448914 . + . ID=gene424;Name=RD04_RS02125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02125;old_locus_tag=RD04_02115 NZ_CP010961.1 Protein Homology CDS 448243 448914 . + 0 ID=cds415;Parent=gene424;Dbxref=Genbank:WP_010931421.1;Name=WP_010931421.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931421.1;transl_table=11 NZ_CP010961.1 RefSeq gene 449243 449464 . + . ID=gene425;Name=RD04_RS02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02130;old_locus_tag=RD04_02120 NZ_CP010961.1 Protein Homology CDS 449243 449464 . + 0 ID=cds416;Parent=gene425;Dbxref=Genbank:WP_010931422.1;Name=WP_010931422.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931422.1;transl_table=11 NZ_CP010961.1 RefSeq gene 449464 449745 . + . ID=gene426;Name=RD04_RS02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02135;old_locus_tag=RD04_02125 NZ_CP010961.1 Protein Homology CDS 449464 449745 . + 0 ID=cds417;Parent=gene426;Dbxref=Genbank:WP_010926433.1;Name=WP_010926433.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010926433.1;transl_table=11 NZ_CP010961.1 RefSeq gene 449742 450257 . - . ID=gene427;Name=RD04_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02140;old_locus_tag=RD04_02130 NZ_CP010961.1 Protein Homology CDS 449742 450257 . - 0 ID=cds418;Parent=gene427;Dbxref=Genbank:WP_010931423.1;Name=WP_010931423.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931423.1;transl_table=11 NZ_CP010961.1 RefSeq gene 450257 450808 . - . ID=gene428;Name=RD04_RS02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02145;old_locus_tag=RD04_02135 NZ_CP010961.1 Protein Homology CDS 450257 450808 . - 0 ID=cds419;Parent=gene428;Dbxref=Genbank:WP_010931424.1;Name=WP_010931424.1;gbkey=CDS;product=lysozyme;protein_id=WP_010931424.1;transl_table=11 NZ_CP010961.1 RefSeq gene 450787 451029 . - . ID=gene429;Name=RD04_RS02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02150;old_locus_tag=RD04_02140 NZ_CP010961.1 Protein Homology CDS 450787 451029 . - 0 ID=cds420;Parent=gene429;Dbxref=Genbank:WP_010931425.1;Name=WP_010931425.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931425.1;transl_table=11 NZ_CP010961.1 RefSeq gene 451034 451846 . - . ID=gene430;Name=RD04_RS02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02155;old_locus_tag=RD04_02145 NZ_CP010961.1 Protein Homology CDS 451034 451846 . - 0 ID=cds421;Parent=gene430;Dbxref=Genbank:WP_010931426.1;Name=WP_010931426.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931426.1;transl_table=11 NZ_CP010961.1 RefSeq gene 451846 452109 . - . ID=gene431;Name=RD04_RS02160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02160;old_locus_tag=RD04_02150 NZ_CP010961.1 Protein Homology CDS 451846 452109 . - 0 ID=cds422;Parent=gene431;Dbxref=Genbank:WP_010926428.1;Name=WP_010926428.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010926428.1;transl_table=11 NZ_CP010961.1 RefSeq gene 452328 452744 . - . ID=gene432;Name=RD04_RS02165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02165;old_locus_tag=RD04_02155 NZ_CP010961.1 Protein Homology CDS 452328 452744 . - 0 ID=cds423;Parent=gene432;Dbxref=Genbank:WP_010931428.1;Name=WP_010931428.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931428.1;transl_table=11 NZ_CP010961.1 RefSeq gene 452749 456705 . - . ID=gene433;Name=RD04_RS02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02170;old_locus_tag=RD04_02160 NZ_CP010961.1 Protein Homology CDS 452749 456705 . - 0 ID=cds424;Parent=gene433;Dbxref=Genbank:WP_010931429.1;Name=WP_010931429.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931429.1;transl_table=11 NZ_CP010961.1 RefSeq gene 456698 457087 . - . ID=gene434;Name=RD04_RS02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02175;old_locus_tag=RD04_02165 NZ_CP010961.1 Protein Homology CDS 456698 457087 . - 0 ID=cds425;Parent=gene434;Dbxref=Genbank:WP_010931430.1;Name=WP_010931430.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931430.1;transl_table=11 NZ_CP010961.1 RefSeq gene 457084 457617 . - . ID=gene435;Name=RD04_RS02180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02180;old_locus_tag=RD04_02170 NZ_CP010961.1 Protein Homology CDS 457084 457617 . - 0 ID=cds426;Parent=gene435;Dbxref=Genbank:WP_010931431.1;Name=WP_010931431.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931431.1;transl_table=11 NZ_CP010961.1 RefSeq gene 457685 458044 . - . ID=gene436;Name=RD04_RS02185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02185;old_locus_tag=RD04_02175 NZ_CP010961.1 Protein Homology CDS 457685 458044 . - 0 ID=cds427;Parent=gene436;Dbxref=Genbank:WP_010931432.1;Name=WP_010931432.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931432.1;transl_table=11 NZ_CP010961.1 RefSeq gene 458054 460666 . - . ID=gene437;Name=RD04_RS02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02190;old_locus_tag=RD04_02180 NZ_CP010961.1 Protein Homology CDS 458054 460666 . - 0 ID=cds428;Parent=gene437;Dbxref=Genbank:WP_010931433.1;Name=WP_010931433.1;gbkey=CDS;product=tail protein;protein_id=WP_010931433.1;transl_table=11 NZ_CP010961.1 RefSeq gene 460692 460982 . - . ID=gene438;Name=RD04_RS02195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02195;old_locus_tag=RD04_02185 NZ_CP010961.1 Protein Homology CDS 460692 460982 . - 0 ID=cds429;Parent=gene438;Dbxref=Genbank:WP_010931434.1;Name=WP_010931434.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931434.1;transl_table=11 NZ_CP010961.1 RefSeq gene 461000 461329 . - . ID=gene439;Name=RD04_RS02200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02200;old_locus_tag=RD04_02190 NZ_CP010961.1 Protein Homology CDS 461000 461329 . - 0 ID=cds430;Parent=gene439;Dbxref=Genbank:WP_003813412.1;Name=WP_003813412.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813412.1;transl_table=11 NZ_CP010961.1 RefSeq gene 461339 461857 . - . ID=gene440;Name=RD04_RS02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02205;old_locus_tag=RD04_02195 NZ_CP010961.1 Protein Homology CDS 461339 461857 . - 0 ID=cds431;Parent=gene440;Dbxref=Genbank:WP_010931435.1;Name=WP_010931435.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931435.1;transl_table=11 NZ_CP010961.1 RefSeq gene 462112 462612 . - . ID=gene441;Name=RD04_RS02210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02210;old_locus_tag=RD04_02200 NZ_CP010961.1 Protein Homology CDS 462112 462612 . - 0 ID=cds432;Parent=gene441;Dbxref=Genbank:WP_010931436.1;Name=WP_010931436.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931436.1;transl_table=11 NZ_CP010961.1 RefSeq gene 462620 463042 . - . ID=gene442;Name=RD04_RS02215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02215;old_locus_tag=RD04_02205 NZ_CP010961.1 Protein Homology CDS 462620 463042 . - 0 ID=cds433;Parent=gene442;Dbxref=Genbank:WP_010931437.1;Name=WP_010931437.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931437.1;transl_table=11 NZ_CP010961.1 RefSeq gene 463039 463437 . - . ID=gene443;Name=RD04_RS02220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02220;old_locus_tag=RD04_02210 NZ_CP010961.1 Protein Homology CDS 463039 463437 . - 0 ID=cds434;Parent=gene443;Dbxref=Genbank:WP_010931438.1;Name=WP_010931438.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931438.1;transl_table=11 NZ_CP010961.1 RefSeq gene 463434 463829 . - . ID=gene444;Name=RD04_RS02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02225;old_locus_tag=RD04_02215 NZ_CP010961.1 Protein Homology CDS 463434 463829 . - 0 ID=cds435;Parent=gene444;Dbxref=Genbank:WP_010931439.1;Name=WP_010931439.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931439.1;transl_table=11 NZ_CP010961.1 RefSeq gene 463829 464029 . - . ID=gene445;Name=RD04_RS02230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02230;old_locus_tag=RD04_02220 NZ_CP010961.1 Protein Homology CDS 463829 464029 . - 0 ID=cds436;Parent=gene445;Dbxref=Genbank:WP_010931440.1;Name=WP_010931440.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931440.1;transl_table=11 NZ_CP010961.1 RefSeq gene 464031 464513 . - . ID=gene446;Name=RD04_RS02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02235;old_locus_tag=RD04_02225 NZ_CP010961.1 Protein Homology CDS 464031 464513 . - 0 ID=cds437;Parent=gene446;Dbxref=Genbank:WP_019247789.1;Name=WP_019247789.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247789.1;transl_table=11 NZ_CP010961.1 RefSeq gene 464576 464827 . - . ID=gene447;Name=RD04_RS02240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02240;old_locus_tag=RD04_02230 NZ_CP010961.1 Protein Homology CDS 464576 464827 . - 0 ID=cds438;Parent=gene447;Dbxref=Genbank:WP_010931442.1;Name=WP_010931442.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931442.1;transl_table=11 NZ_CP010961.1 RefSeq gene 464837 465403 . - . ID=gene448;Name=RD04_RS02245;end_range=465403,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS02245;old_locus_tag=RD04_02235;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 464837 465403 . - 0 ID=cds439;Parent=gene448;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=465403,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 465502 466452 . + . ID=gene449;Name=RD04_RS02250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02250;old_locus_tag=RD04_02240 NZ_CP010961.1 Protein Homology CDS 465502 466452 . + 0 ID=cds440;Parent=gene449;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 466551 467360 . + . ID=gene450;Name=RD04_RS02255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02255;old_locus_tag=RD04_02245 NZ_CP010961.1 Protein Homology CDS 466551 467360 . + 0 ID=cds441;Parent=gene450;Dbxref=Genbank:WP_049787753.1;Name=WP_049787753.1;gbkey=CDS;product=integrase;protein_id=WP_049787753.1;transl_table=11 NZ_CP010961.1 RefSeq gene 467496 467903 . - . ID=gene451;Name=RD04_RS02260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS02260;old_locus_tag=RD04_02250;partial=true;pseudo=true;start_range=.,467496 NZ_CP010961.1 Protein Homology CDS 467496 467903 . - 0 ID=cds442;Parent=gene451;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,467496;transl_table=11 NZ_CP010961.1 RefSeq gene 467930 468532 . - . ID=gene452;Name=RD04_RS02265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02265;old_locus_tag=RD04_02255 NZ_CP010961.1 Protein Homology CDS 467930 468532 . - 0 ID=cds443;Parent=gene452;Dbxref=Genbank:WP_010931443.1;Name=WP_010931443.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931443.1;transl_table=11 NZ_CP010961.1 RefSeq gene 468655 468897 . - . ID=gene453;Name=RD04_RS02270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02270;old_locus_tag=RD04_02260 NZ_CP010961.1 Protein Homology CDS 468655 468897 . - 0 ID=cds444;Parent=gene453;Dbxref=Genbank:WP_010931444.1;Name=WP_010931444.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931444.1;transl_table=11 NZ_CP010961.1 RefSeq gene 468903 470015 . - . ID=gene454;Name=RD04_RS02275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02275;old_locus_tag=RD04_02265 NZ_CP010961.1 Protein Homology CDS 468903 470015 . - 0 ID=cds445;Parent=gene454;Dbxref=Genbank:WP_019247943.1;Name=WP_019247943.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247943.1;transl_table=11 NZ_CP010961.1 RefSeq gene 469987 471405 . - . ID=gene455;Name=RD04_RS02280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02280;old_locus_tag=RD04_02270 NZ_CP010961.1 Protein Homology CDS 469987 471405 . - 0 ID=cds446;Parent=gene455;Dbxref=Genbank:WP_010931446.1;Name=WP_010931446.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931446.1;transl_table=11 NZ_CP010961.1 RefSeq gene 471408 472685 . - . ID=gene456;Name=RD04_RS02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02285;old_locus_tag=RD04_02275 NZ_CP010961.1 Protein Homology CDS 471408 472685 . - 0 ID=cds447;Parent=gene456;Dbxref=Genbank:WP_010931447.1;Name=WP_010931447.1;gbkey=CDS;product=terminase;protein_id=WP_010931447.1;transl_table=11 NZ_CP010961.1 RefSeq gene 472672 473157 . - . ID=gene457;Name=RD04_RS02290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02290;old_locus_tag=RD04_02280 NZ_CP010961.1 Protein Homology CDS 472672 473157 . - 0 ID=cds448;Parent=gene457;Dbxref=Genbank:WP_033469562.1;Name=WP_033469562.1;gbkey=CDS;product=terminase;protein_id=WP_033469562.1;transl_table=11 NZ_CP010961.1 RefSeq gene 473797 474747 . - . ID=gene458;Name=RD04_RS02295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02295;old_locus_tag=RD04_02285 NZ_CP010961.1 Protein Homology CDS 473797 474747 . - 0 ID=cds449;Parent=gene458;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 474765 474986 . + . ID=gene459;Name=RD04_RS02300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02300;old_locus_tag=RD04_02290 NZ_CP010961.1 Protein Homology CDS 474765 474986 . + 0 ID=cds450;Parent=gene459;Dbxref=Genbank:WP_023853183.1;Name=WP_023853183.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853183.1;transl_table=11 NZ_CP010961.1 RefSeq gene 475001 475699 . + . ID=gene460;Name=RD04_RS02305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02305;old_locus_tag=RD04_02295 NZ_CP010961.1 Protein Homology CDS 475001 475699 . + 0 ID=cds451;Parent=gene460;Dbxref=Genbank:WP_010931449.1;Name=WP_010931449.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931449.1;transl_table=11 NZ_CP010961.1 RefSeq gene 475692 476012 . + . ID=gene461;Name=RD04_RS02310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02310;old_locus_tag=RD04_02300 NZ_CP010961.1 Protein Homology CDS 475692 476012 . + 0 ID=cds452;Parent=gene461;Dbxref=Genbank:WP_010931450.1;Name=WP_010931450.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931450.1;transl_table=11 NZ_CP010961.1 RefSeq gene 476492 477103 . + . ID=gene462;Name=RD04_RS02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02315;old_locus_tag=RD04_02305 NZ_CP010961.1 Protein Homology CDS 476492 477103 . + 0 ID=cds453;Parent=gene462;Dbxref=Genbank:WP_010931451.1;Name=WP_010931451.1;gbkey=CDS;product=repressor;protein_id=WP_010931451.1;transl_table=11 NZ_CP010961.1 RefSeq gene 477175 477381 . + . ID=gene463;Name=RD04_RS02320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02320;old_locus_tag=RD04_02310 NZ_CP010961.1 Protein Homology CDS 477175 477381 . + 0 ID=cds454;Parent=gene463;Dbxref=Genbank:WP_019247378.1;Name=WP_019247378.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247378.1;transl_table=11 NZ_CP010961.1 RefSeq gene 477633 478583 . - . ID=gene464;Name=RD04_RS02325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02325;old_locus_tag=RD04_02315 NZ_CP010961.1 Protein Homology CDS 477633 478583 . - 0 ID=cds455;Parent=gene464;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 478682 479755 . - . ID=gene465;Name=RD04_RS02330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02330;old_locus_tag=RD04_02320 NZ_CP010961.1 Protein Homology CDS 478682 479755 . - 0 ID=cds456;Parent=gene465;Dbxref=Genbank:WP_019248926.1;Name=WP_019248926.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248926.1;transl_table=11 NZ_CP010961.1 RefSeq gene 479923 480717 . + . ID=gene466;Name=RD04_RS02335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02335;old_locus_tag=RD04_02325 NZ_CP010961.1 Protein Homology CDS 479923 480717 . + 0 ID=cds457;Parent=gene466;Dbxref=Genbank:WP_050818153.1;Name=WP_050818153.1;gbkey=CDS;product=dioxygenase;protein_id=WP_050818153.1;transl_table=11 NZ_CP010961.1 RefSeq gene 480757 481281 . - . ID=gene467;Name=RD04_RS02340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02340;old_locus_tag=RD04_02330 NZ_CP010961.1 Protein Homology CDS 480757 481281 . - 0 ID=cds458;Parent=gene467;Dbxref=Genbank:WP_010925795.1;Name=WP_010925795.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010925795.1;transl_table=11 NZ_CP010961.1 RefSeq gene 481274 483016 . - . ID=gene468;Name=RD04_RS02345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02345;old_locus_tag=RD04_02335 NZ_CP010961.1 Protein Homology CDS 481274 483016 . - 0 ID=cds459;Parent=gene468;Dbxref=Genbank:WP_010931474.1;Name=WP_010931474.1;gbkey=CDS;product=sulfite reductase;protein_id=WP_010931474.1;transl_table=11 NZ_CP010961.1 RefSeq gene 483226 483984 . - . ID=gene469;Name=RD04_RS02350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02350;old_locus_tag=RD04_02340 NZ_CP010961.1 Protein Homology CDS 483226 483984 . - 0 ID=cds460;Parent=gene469;Dbxref=Genbank:WP_010931473.1;Name=WP_010931473.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931473.1;transl_table=11 NZ_CP010961.1 RefSeq gene 483987 484694 . - . ID=gene470;Name=RD04_RS02355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02355;old_locus_tag=RD04_02345 NZ_CP010961.1 Protein Homology CDS 483987 484694 . - 0 ID=cds461;Parent=gene470;Dbxref=Genbank:WP_010931472.1;Name=WP_010931472.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931472.1;transl_table=11 NZ_CP010961.1 RefSeq gene 484711 485592 . - . ID=gene471;Name=RD04_RS02360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02360;old_locus_tag=RD04_02350 NZ_CP010961.1 Protein Homology CDS 484711 485592 . - 0 ID=cds462;Parent=gene471;Dbxref=Genbank:WP_010931471.1;Name=WP_010931471.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_010931471.1;transl_table=11 NZ_CP010961.1 RefSeq gene 485603 486361 . - . ID=gene472;Name=RD04_RS02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02365;old_locus_tag=RD04_02355 NZ_CP010961.1 Protein Homology CDS 485603 486361 . - 0 ID=cds463;Parent=gene472;Dbxref=Genbank:WP_019247734.1;Name=WP_019247734.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_019247734.1;transl_table=11 NZ_CP010961.1 RefSeq gene 486330 487085 . + . ID=gene473;Name=RD04_RS02370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02370;old_locus_tag=RD04_02360 NZ_CP010961.1 Protein Homology CDS 486330 487085 . + 0 ID=cds464;Parent=gene473;Dbxref=Genbank:WP_019248554.1;Name=WP_019248554.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248554.1;transl_table=11 NZ_CP010961.1 RefSeq gene 487155 488573 . + . ID=gene474;Name=RD04_RS02375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02375;old_locus_tag=RD04_02365 NZ_CP010961.1 Protein Homology CDS 487155 488573 . + 0 ID=cds465;Parent=gene474;Dbxref=Genbank:WP_010931468.1;Name=WP_010931468.1;gbkey=CDS;product=amidase;protein_id=WP_010931468.1;transl_table=11 NZ_CP010961.1 RefSeq gene 488595 489245 . - . ID=gene475;Name=RD04_RS02380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02380;old_locus_tag=RD04_02370 NZ_CP010961.1 Protein Homology CDS 488595 489245 . - 0 ID=cds466;Parent=gene475;Dbxref=Genbank:WP_003819076.1;Name=WP_003819076.1;gbkey=CDS;product=carbonic anhydrase;protein_id=WP_003819076.1;transl_table=11 NZ_CP010961.1 RefSeq gene 489379 489714 . - . ID=gene476;Name=RD04_RS02385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02385;old_locus_tag=RD04_02375 NZ_CP010961.1 Protein Homology CDS 489379 489714 . - 0 ID=cds467;Parent=gene476;Dbxref=Genbank:WP_033446132.1;Name=WP_033446132.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446132.1;transl_table=11 NZ_CP010961.1 RefSeq gene 489803 490753 . + . ID=gene477;Name=RD04_RS02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02390;old_locus_tag=RD04_02380 NZ_CP010961.1 Protein Homology CDS 489803 490753 . + 0 ID=cds468;Parent=gene477;Dbxref=Genbank:WP_005015810.1;Name=WP_005015810.1;gbkey=CDS;product=transposase;protein_id=WP_005015810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 490830 492650 . + . ID=gene478;Name=RD04_RS02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02395;old_locus_tag=RD04_02385 NZ_CP010961.1 Protein Homology CDS 490830 492650 . + 0 ID=cds469;Parent=gene478;Dbxref=Genbank:WP_010931467.1;Name=WP_010931467.1;gbkey=CDS;product=ATP-dependent DNA helicase RecQ;protein_id=WP_010931467.1;transl_table=11 NZ_CP010961.1 RefSeq gene 492655 493728 . - . ID=gene479;Name=RD04_RS02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02400;old_locus_tag=RD04_02390 NZ_CP010961.1 Protein Homology CDS 492655 493728 . - 0 ID=cds470;Parent=gene479;Dbxref=Genbank:WP_010931466.1;Name=WP_010931466.1;gbkey=CDS;product=Holliday junction DNA helicase RuvB;protein_id=WP_010931466.1;transl_table=11 NZ_CP010961.1 RefSeq gene 493851 494819 . + . ID=gene480;Name=RD04_RS02405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02405;old_locus_tag=RD04_02395 NZ_CP010961.1 Protein Homology CDS 493851 494819 . + 0 ID=cds471;Parent=gene480;Dbxref=Genbank:WP_003814230.1;Name=WP_003814230.1;Note=catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine;gbkey=CDS;product=serine/threonine dehydratase;protein_id=WP_003814230.1;transl_table=11 NZ_CP010961.1 RefSeq gene 494893 495804 . + . ID=gene481;Name=RD04_RS02410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02410;old_locus_tag=RD04_02400 NZ_CP010961.1 Protein Homology CDS 494893 495804 . + 0 ID=cds472;Parent=gene481;Dbxref=Genbank:WP_010927008.1;Name=WP_010927008.1;gbkey=CDS;product=NAD-dependent dehydratase;protein_id=WP_010927008.1;transl_table=11 NZ_CP010961.1 RefSeq gene 495823 496395 . - . ID=gene482;Name=RD04_RS02415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02415;old_locus_tag=RD04_02405 NZ_CP010961.1 Protein Homology CDS 495823 496395 . - 0 ID=cds473;Parent=gene482;Dbxref=Genbank:WP_003814226.1;Name=WP_003814226.1;gbkey=CDS;product=Holliday junction ATP-dependent DNA helicase RuvA;protein_id=WP_003814226.1;transl_table=11 NZ_CP010961.1 RefSeq gene 496476 497024 . - . ID=gene483;Name=RD04_RS02420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02420;old_locus_tag=RD04_02410 NZ_CP010961.1 Protein Homology CDS 496476 497024 . - 0 ID=cds474;Parent=gene483;Dbxref=Genbank:WP_010931465.1;Name=WP_010931465.1;gbkey=CDS;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_010931465.1;transl_table=11 NZ_CP010961.1 RefSeq gene 497024 498613 . - . ID=gene484;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=RD04_RS02425;old_locus_tag=RD04_02415 NZ_CP010961.1 Protein Homology CDS 497024 498613 . - 0 ID=cds475;Parent=gene484;Dbxref=Genbank:WP_010931464.1;Name=WP_010931464.1;Note=involved in de novo purine biosynthesis;gbkey=CDS;gene=purH;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase;protein_id=WP_010931464.1;transl_table=11 NZ_CP010961.1 RefSeq gene 498683 498922 . - . ID=gene485;Name=RD04_RS02430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02430;old_locus_tag=RD04_02420 NZ_CP010961.1 Protein Homology CDS 498683 498922 . - 0 ID=cds476;Parent=gene485;Dbxref=Genbank:WP_003814221.1;Name=WP_003814221.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_003814221.1;transl_table=11 NZ_CP010961.1 RefSeq gene 498963 499988 . - . ID=gene486;Name=RD04_RS02435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02435;old_locus_tag=RD04_02425 NZ_CP010961.1 Protein Homology CDS 498963 499988 . - 0 ID=cds477;Parent=gene486;Dbxref=Genbank:WP_023995141.1;Name=WP_023995141.1;gbkey=CDS;product=TIM-barrel protein%2C NifR3 family;protein_id=WP_023995141.1;transl_table=11 NZ_CP010961.1 RefSeq gene 500054 501225 . - . ID=gene487;Name=RD04_RS02440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS02440;old_locus_tag=RD04_02430;pseudo=true NZ_CP010961.1 Protein Homology CDS 500054 501225 . - 0 ID=cds478;Parent=gene487;Note=frameshifted;gbkey=CDS;product=monooxygenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 501331 501783 . + . ID=gene488;Name=RD04_RS02445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02445;old_locus_tag=RD04_02435 NZ_CP010961.1 Protein Homology CDS 501331 501783 . + 0 ID=cds479;Parent=gene488;Dbxref=Genbank:WP_010931463.1;Name=WP_010931463.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931463.1;transl_table=11 NZ_CP010961.1 RefSeq gene 501793 503133 . - . ID=gene489;Name=RD04_RS02450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02450;old_locus_tag=RD04_02440 NZ_CP010961.1 Protein Homology CDS 501793 503133 . - 0 ID=cds480;Parent=gene489;Dbxref=Genbank:WP_010931462.1;Name=WP_010931462.1;gbkey=CDS;product=Xaa-Pro aminopeptidase;protein_id=WP_010931462.1;transl_table=11 NZ_CP010961.1 RefSeq gene 503450 504487 . + . ID=gene490;Name=RD04_RS02455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02455;old_locus_tag=RD04_02445 NZ_CP010961.1 Protein Homology CDS 503450 504487 . + 0 ID=cds481;Parent=gene490;Dbxref=Genbank:WP_050818144.1;Name=WP_050818144.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_050818144.1;transl_table=11 NZ_CP010961.1 RefSeq gene 504869 505228 . + . ID=gene491;Name=RD04_RS02460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02460;old_locus_tag=RD04_02450 NZ_CP010961.1 Protein Homology CDS 504869 505228 . + 0 ID=cds482;Parent=gene491;Dbxref=Genbank:WP_003814209.1;Name=WP_003814209.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814209.1;transl_table=11 NZ_CP010961.1 RefSeq gene 505312 506253 . - . ID=gene492;Name=RD04_RS02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02465;old_locus_tag=RD04_02455 NZ_CP010961.1 Protein Homology CDS 505312 506253 . - 0 ID=cds483;Parent=gene492;Dbxref=Genbank:WP_041166340.1;Name=WP_041166340.1;gbkey=CDS;product=integrase;protein_id=WP_041166340.1;transl_table=11 NZ_CP010961.1 RefSeq gene 506376 507278 . + . ID=gene493;Name=RD04_RS02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02470;old_locus_tag=RD04_02460 NZ_CP010961.1 GeneMarkS+ CDS 506376 507278 . + 0 ID=cds484;Parent=gene493;Dbxref=Genbank:WP_041337088.1;Name=WP_041337088.1;gbkey=CDS;product=integrase;protein_id=WP_041337088.1;transl_table=11 NZ_CP010961.1 RefSeq gene 507572 508666 . + . ID=gene494;Name=RD04_RS02475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02475;old_locus_tag=RD04_02465 NZ_CP010961.1 Protein Homology CDS 507572 508666 . + 0 ID=cds485;Parent=gene494;Dbxref=Genbank:WP_003814206.1;Name=WP_003814206.1;gbkey=CDS;product=porin;protein_id=WP_003814206.1;transl_table=11 NZ_CP010961.1 RefSeq gene 508757 509629 . + . ID=gene495;Name=RD04_RS02480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02480;old_locus_tag=RD04_02470 NZ_CP010961.1 Protein Homology CDS 508757 509629 . + 0 ID=cds486;Parent=gene495;Dbxref=Genbank:WP_033446149.1;Name=WP_033446149.1;gbkey=CDS;product=membrane protein;protein_id=WP_033446149.1;transl_table=11 NZ_CP010961.1 RefSeq gene 509651 510490 . - . ID=gene496;Name=RD04_RS02485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02485;old_locus_tag=RD04_02475 NZ_CP010961.1 Protein Homology CDS 509651 510490 . - 0 ID=cds487;Parent=gene496;Dbxref=Genbank:WP_003814203.1;Name=WP_003814203.1;gbkey=CDS;product=UTP--glucose-1-phosphate uridylyltransferase;protein_id=WP_003814203.1;transl_table=11 NZ_CP010961.1 RefSeq gene 510566 512083 . + . ID=gene497;Name=RD04_RS02490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02490;old_locus_tag=RD04_02480 NZ_CP010961.1 Protein Homology CDS 510566 512083 . + 0 ID=cds488;Parent=gene497;Dbxref=Genbank:WP_010931459.1;Name=WP_010931459.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931459.1;transl_table=11 NZ_CP010961.1 RefSeq gene 512180 513280 . - . ID=gene498;Name=RD04_RS02495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02495;old_locus_tag=RD04_02485 NZ_CP010961.1 Protein Homology CDS 512180 513280 . - 0 ID=cds489;Parent=gene498;Dbxref=Genbank:WP_010931458.1;Name=WP_010931458.1;gbkey=CDS;product=alpha/beta hydrolase;protein_id=WP_010931458.1;transl_table=11 NZ_CP010961.1 RefSeq gene 513297 513719 . - . ID=gene499;Name=RD04_RS02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02500;old_locus_tag=RD04_02490 NZ_CP010961.1 Protein Homology CDS 513297 513719 . - 0 ID=cds490;Parent=gene499;Dbxref=Genbank:WP_010931457.1;Name=WP_010931457.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931457.1;transl_table=11 NZ_CP010961.1 RefSeq gene 513742 513954 . - . ID=gene500;Name=RD04_RS02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02505;old_locus_tag=RD04_02495 NZ_CP010961.1 Protein Homology CDS 513742 513954 . - 0 ID=cds491;Parent=gene500;Dbxref=Genbank:WP_003814195.1;Name=WP_003814195.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814195.1;transl_table=11 NZ_CP010961.1 RefSeq gene 514001 514921 . - . ID=gene501;Name=RD04_RS02510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02510;old_locus_tag=RD04_02500 NZ_CP010961.1 Protein Homology CDS 514001 514921 . - 0 ID=cds492;Parent=gene501;Dbxref=Genbank:WP_010931456.1;Name=WP_010931456.1;Note=catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids;gbkey=CDS;product=branched chain amino acid aminotransferase;protein_id=WP_010931456.1;transl_table=11 NZ_CP010961.1 RefSeq gene 515104 515853 . + . ID=gene502;Name=RD04_RS02515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02515;old_locus_tag=RD04_02505 NZ_CP010961.1 Protein Homology CDS 515104 515853 . + 0 ID=cds493;Parent=gene502;Dbxref=Genbank:WP_010931455.1;Name=WP_010931455.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931455.1;transl_table=11 NZ_CP010961.1 RefSeq gene 515856 516185 . + . ID=gene503;Name=RD04_RS02520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02520;old_locus_tag=RD04_02510 NZ_CP010961.1 Protein Homology CDS 515856 516185 . + 0 ID=cds494;Parent=gene503;Dbxref=Genbank:WP_003814188.1;Name=WP_003814188.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814188.1;transl_table=11 NZ_CP010961.1 RefSeq gene 516392 517825 . + . ID=gene504;Name=RD04_RS02525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02525;old_locus_tag=RD04_02515 NZ_CP010961.1 Protein Homology CDS 516392 517825 . + 0 ID=cds495;Parent=gene504;Dbxref=Genbank:WP_010931454.1;Name=WP_010931454.1;gbkey=CDS;product=DEAD/DEAH box helicase;protein_id=WP_010931454.1;transl_table=11 NZ_CP010961.1 RefSeq gene 517837 518220 . - . ID=gene505;Name=RD04_RS02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02530;old_locus_tag=RD04_02520 NZ_CP010961.1 Protein Homology CDS 517837 518220 . - 0 ID=cds496;Parent=gene505;Dbxref=Genbank:WP_003814185.1;Name=WP_003814185.1;gbkey=CDS;product=thiol reductase thioredoxin;protein_id=WP_003814185.1;transl_table=11 NZ_CP010961.1 RefSeq gene 518282 519082 . + . ID=gene506;Name=RD04_RS02535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02535;old_locus_tag=RD04_02525 NZ_CP010961.1 Protein Homology CDS 518282 519082 . + 0 ID=cds497;Parent=gene506;Dbxref=Genbank:WP_010931453.1;Name=WP_010931453.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931453.1;transl_table=11 NZ_CP010961.1 RefSeq gene 519181 520131 . + . ID=gene507;Name=RD04_RS02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02540;old_locus_tag=RD04_02530 NZ_CP010961.1 Protein Homology CDS 519181 520131 . + 0 ID=cds498;Parent=gene507;Dbxref=Genbank:WP_005015810.1;Name=WP_005015810.1;gbkey=CDS;product=transposase;protein_id=WP_005015810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 520187 520999 . + . ID=gene508;Name=RD04_RS02545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02545;old_locus_tag=RD04_02535 NZ_CP010961.1 Protein Homology CDS 520187 520999 . + 0 ID=cds499;Parent=gene508;Dbxref=Genbank:WP_010931477.1;Name=WP_010931477.1;gbkey=CDS;product=damage-inducible protein;protein_id=WP_010931477.1;transl_table=11 NZ_CP010961.1 RefSeq gene 521158 522006 . + . ID=gene509;Name=RD04_RS02550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02550;old_locus_tag=RD04_02540 NZ_CP010961.1 Protein Homology CDS 521158 522006 . + 0 ID=cds500;Parent=gene509;Dbxref=Genbank:WP_003814178.1;Name=WP_003814178.1;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_003814178.1;transl_table=11 NZ_CP010961.1 RefSeq gene 522207 526601 . + . ID=gene510;Name=RD04_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02555;old_locus_tag=RD04_02545 NZ_CP010961.1 Protein Homology CDS 522207 526601 . + 0 ID=cds501;Parent=gene510;Dbxref=Genbank:WP_010931478.1;Name=WP_010931478.1;gbkey=CDS;product=dermonecrotic toxin;protein_id=WP_010931478.1;transl_table=11 NZ_CP010961.1 RefSeq gene 526695 527672 . - . ID=gene511;Name=RD04_RS02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02560;old_locus_tag=RD04_02550 NZ_CP010961.1 Protein Homology CDS 526695 527672 . - 0 ID=cds502;Parent=gene511;Dbxref=Genbank:WP_010931479.1;Name=WP_010931479.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931479.1;transl_table=11 NZ_CP010961.1 RefSeq gene 528059 528637 . + . ID=gene512;Name=RD04_RS02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02565;old_locus_tag=RD04_02555 NZ_CP010961.1 Protein Homology CDS 528059 528637 . + 0 ID=cds503;Parent=gene512;Dbxref=Genbank:WP_003814172.1;Name=WP_003814172.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814172.1;transl_table=11 NZ_CP010961.1 RefSeq gene 528785 529834 . - . ID=gene513;Name=RD04_RS02570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02570;old_locus_tag=RD04_02560 NZ_CP010961.1 Protein Homology CDS 528785 529834 . - 0 ID=cds504;Parent=gene513;Dbxref=Genbank:WP_010931480.1;Name=WP_010931480.1;gbkey=CDS;product=dihydroorotate dehydrogenase 2;protein_id=WP_010931480.1;transl_table=11 NZ_CP010961.1 RefSeq gene 529875 530600 . - . ID=gene514;Name=RD04_RS02575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02575;old_locus_tag=RD04_02565 NZ_CP010961.1 Protein Homology CDS 529875 530600 . - 0 ID=cds505;Parent=gene514;Dbxref=Genbank:WP_033446151.1;Name=WP_033446151.1;gbkey=CDS;product=arginyltransferase;protein_id=WP_033446151.1;transl_table=11 NZ_CP010961.1 RefSeq gene 530637 531399 . - . ID=gene515;Name=RD04_RS02580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS02580;old_locus_tag=RD04_02570;pseudo=true NZ_CP010961.1 Protein Homology CDS 530637 531399 . - 0 ID=cds506;Parent=gene515;Note=frameshifted;gbkey=CDS;product=leucyl/phenylalanyl-tRNA--protein transferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 531404 531985 . - . ID=gene516;Name=RD04_RS02585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02585;old_locus_tag=RD04_02575 NZ_CP010961.1 Protein Homology CDS 531404 531985 . - 0 ID=cds507;Parent=gene516;Dbxref=Genbank:WP_010931481.1;Name=WP_010931481.1;gbkey=CDS;product=NUDIX hydrolase;protein_id=WP_010931481.1;transl_table=11 NZ_CP010961.1 RefSeq gene 531982 532893 . - . ID=gene517;Name=RD04_RS02590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02590;old_locus_tag=RD04_02580 NZ_CP010961.1 Protein Homology CDS 531982 532893 . - 0 ID=cds508;Parent=gene517;Dbxref=Genbank:WP_010931482.1;Name=WP_010931482.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931482.1;transl_table=11 NZ_CP010961.1 RefSeq gene 533009 533410 . + . ID=gene518;Name=RD04_RS02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02595;old_locus_tag=RD04_02585 NZ_CP010961.1 Protein Homology CDS 533009 533410 . + 0 ID=cds509;Parent=gene518;Dbxref=Genbank:WP_003820995.1;Name=WP_003820995.1;gbkey=CDS;product=membrane protein;protein_id=WP_003820995.1;transl_table=11 NZ_CP010961.1 RefSeq gene 533428 534030 . - . ID=gene519;Name=RD04_RS02600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02600;old_locus_tag=RD04_02590 NZ_CP010961.1 Protein Homology CDS 533428 534030 . - 0 ID=cds510;Parent=gene519;Dbxref=Genbank:WP_010927005.1;Name=WP_010927005.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010927005.1;transl_table=11 NZ_CP010961.1 RefSeq gene 534088 534471 . - . ID=gene520;Name=RD04_RS02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02605;old_locus_tag=RD04_02595 NZ_CP010961.1 Protein Homology CDS 534088 534471 . - 0 ID=cds511;Parent=gene520;Dbxref=Genbank:WP_003814152.1;Name=WP_003814152.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814152.1;transl_table=11 NZ_CP010961.1 RefSeq gene 534584 534657 . - . ID=gene521;Name=RD04_RS02610;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS02610;old_locus_tag=RD04_02600 NZ_CP010961.1 tRNAscan-SE tRNA 534584 534657 . - . ID=rna9;Parent=gene521;anticodon=(pos:complement(534623..534625));gbkey=tRNA;product=tRNA-Cys NZ_CP010961.1 tRNAscan-SE exon 534584 534657 . - . ID=id11;Parent=rna9;anticodon=(pos:complement(534623..534625));gbkey=tRNA;product=tRNA-Cys NZ_CP010961.1 RefSeq gene 534718 534793 . - . ID=gene522;Name=RD04_RS02615;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS02615;old_locus_tag=RD04_02605 NZ_CP010961.1 tRNAscan-SE tRNA 534718 534793 . - . ID=rna10;Parent=gene522;anticodon=(pos:complement(534758..534760));gbkey=tRNA;product=tRNA-Gly NZ_CP010961.1 tRNAscan-SE exon 534718 534793 . - . ID=id12;Parent=rna10;anticodon=(pos:complement(534758..534760));gbkey=tRNA;product=tRNA-Gly NZ_CP010961.1 RefSeq gene 534916 535173 . - . ID=gene523;Name=RD04_RS02620;end_range=535173,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS02620;old_locus_tag=RD04_02610;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 534916 535173 . - 0 ID=cds512;Parent=gene523;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=535173,.;gbkey=CDS;partial=true;product=lysine transporter LysE;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 535170 536120 . - . ID=gene524;Name=RD04_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02625;old_locus_tag=RD04_02615 NZ_CP010961.1 Protein Homology CDS 535170 536120 . - 0 ID=cds513;Parent=gene524;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 536269 536979 . - . ID=gene525;Name=RD04_RS02630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02630;old_locus_tag=RD04_02620 NZ_CP010961.1 Protein Homology CDS 536269 536979 . - 0 ID=cds514;Parent=gene525;Dbxref=Genbank:WP_010931483.1;Name=WP_010931483.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010931483.1;transl_table=11 NZ_CP010961.1 RefSeq gene 537051 538712 . - . ID=gene526;Name=RD04_RS02635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02635;old_locus_tag=RD04_02625 NZ_CP010961.1 Protein Homology CDS 537051 538712 . - 0 ID=cds515;Parent=gene526;Dbxref=Genbank:WP_010931484.1;Name=WP_010931484.1;gbkey=CDS;product=thiamine pyrophosphate protein;protein_id=WP_010931484.1;transl_table=11 NZ_CP010961.1 RefSeq gene 538787 539752 . - . ID=gene527;Name=RD04_RS02640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02640;old_locus_tag=RD04_02630 NZ_CP010961.1 Protein Homology CDS 538787 539752 . - 0 ID=cds516;Parent=gene527;Dbxref=Genbank:WP_010931485.1;Name=WP_010931485.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010931485.1;transl_table=11 NZ_CP010961.1 RefSeq gene 539807 540715 . - . ID=gene528;Name=RD04_RS02645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02645;old_locus_tag=RD04_02635 NZ_CP010961.1 Protein Homology CDS 539807 540715 . - 0 ID=cds517;Parent=gene528;Dbxref=Genbank:WP_003808542.1;Name=WP_003808542.1;gbkey=CDS;product=taurine dioxygenase;protein_id=WP_003808542.1;transl_table=11 NZ_CP010961.1 RefSeq gene 541022 543310 . - . ID=gene529;Name=RD04_RS02650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02650;old_locus_tag=RD04_02640 NZ_CP010961.1 Protein Homology CDS 541022 543310 . - 0 ID=cds518;Parent=gene529;Dbxref=Genbank:WP_010931486.1;Name=WP_010931486.1;gbkey=CDS;product=malic enzyme;protein_id=WP_010931486.1;transl_table=11 NZ_CP010961.1 RefSeq gene 543428 544423 . + . ID=gene530;Name=RD04_RS02655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02655;old_locus_tag=RD04_02645 NZ_CP010961.1 Protein Homology CDS 543428 544423 . + 0 ID=cds519;Parent=gene530;Dbxref=Genbank:WP_003808546.1;Name=WP_003808546.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003808546.1;transl_table=11 NZ_CP010961.1 RefSeq gene 544675 545616 . + . ID=gene531;Name=RD04_RS02660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02660;old_locus_tag=RD04_02650 NZ_CP010961.1 Protein Homology CDS 544675 545616 . + 0 ID=cds520;Parent=gene531;Dbxref=Genbank:WP_010931488.1;Name=WP_010931488.1;gbkey=CDS;product=peptide ABC transporter;protein_id=WP_010931488.1;transl_table=11 NZ_CP010961.1 RefSeq gene 545616 546449 . + . ID=gene532;Name=RD04_RS02665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02665;old_locus_tag=RD04_02655 NZ_CP010961.1 Protein Homology CDS 545616 546449 . + 0 ID=cds521;Parent=gene532;Dbxref=Genbank:WP_003808549.1;Name=WP_003808549.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_003808549.1;transl_table=11 NZ_CP010961.1 RefSeq gene 546453 548303 . + . ID=gene533;Name=RD04_RS02670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02670;old_locus_tag=RD04_02660 NZ_CP010961.1 Protein Homology CDS 546453 548303 . + 0 ID=cds522;Parent=gene533;Dbxref=Genbank:WP_010931489.1;Name=WP_010931489.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931489.1;transl_table=11 NZ_CP010961.1 RefSeq gene 548372 549964 . + . ID=gene534;Name=RD04_RS02675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS02675;old_locus_tag=RD04_02665;pseudo=true NZ_CP010961.1 Protein Homology CDS 548372 549964 . + 0 ID=cds523;Parent=gene534;Note=frameshifted;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 549983 551518 . + . ID=gene535;Name=RD04_RS02680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02680;old_locus_tag=RD04_02670 NZ_CP010961.1 Protein Homology CDS 549983 551518 . + 0 ID=cds524;Parent=gene535;Dbxref=Genbank:WP_010931490.1;Name=WP_010931490.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931490.1;transl_table=11 NZ_CP010961.1 RefSeq gene 551612 552553 . - . ID=gene536;Name=RD04_RS02685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02685;old_locus_tag=RD04_02675 NZ_CP010961.1 Protein Homology CDS 551612 552553 . - 0 ID=cds525;Parent=gene536;Dbxref=Genbank:WP_010931491.1;Name=WP_010931491.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931491.1;transl_table=11 NZ_CP010961.1 RefSeq gene 552664 553464 . + . ID=gene537;Name=RD04_RS02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02690;old_locus_tag=RD04_02680 NZ_CP010961.1 Protein Homology CDS 552664 553464 . + 0 ID=cds526;Parent=gene537;Dbxref=Genbank:WP_010931492.1;Name=WP_010931492.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931492.1;transl_table=11 NZ_CP010961.1 RefSeq gene 553526 554032 . - . ID=gene538;Name=RD04_RS02695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02695;old_locus_tag=RD04_02685 NZ_CP010961.1 Protein Homology CDS 553526 554032 . - 0 ID=cds527;Parent=gene538;Dbxref=Genbank:WP_003808562.1;Name=WP_003808562.1;gbkey=CDS;product=activator of HSP90 ATPase;protein_id=WP_003808562.1;transl_table=11 NZ_CP010961.1 RefSeq gene 554029 554367 . - . ID=gene539;Name=RD04_RS02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02700;old_locus_tag=RD04_02690 NZ_CP010961.1 Protein Homology CDS 554029 554367 . - 0 ID=cds528;Parent=gene539;Dbxref=Genbank:WP_003808563.1;Name=WP_003808563.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003808563.1;transl_table=11 NZ_CP010961.1 RefSeq gene 554796 557315 . + . ID=gene540;Name=RD04_RS02705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02705;old_locus_tag=RD04_02695 NZ_CP010961.1 Protein Homology CDS 554796 557315 . + 0 ID=cds529;Parent=gene540;Dbxref=Genbank:WP_010931493.1;Name=WP_010931493.1;gbkey=CDS;product=cell envelope biogenesis protein AsmA;protein_id=WP_010931493.1;transl_table=11 NZ_CP010961.1 RefSeq gene 557312 557698 . + . ID=gene541;Name=RD04_RS02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02710;old_locus_tag=RD04_02700 NZ_CP010961.1 Protein Homology CDS 557312 557698 . + 0 ID=cds530;Parent=gene541;Dbxref=Genbank:WP_003808567.1;Name=WP_003808567.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003808567.1;transl_table=11 NZ_CP010961.1 RefSeq gene 557706 558839 . - . ID=gene542;Name=RD04_RS02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02715;old_locus_tag=RD04_02705 NZ_CP010961.1 Protein Homology CDS 557706 558839 . - 0 ID=cds531;Parent=gene542;Dbxref=Genbank:WP_010931494.1;Name=WP_010931494.1;gbkey=CDS;product=transporter;protein_id=WP_010931494.1;transl_table=11 NZ_CP010961.1 RefSeq gene 558903 559154 . - . ID=gene543;Name=RD04_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02720;old_locus_tag=RD04_02710 NZ_CP010961.1 Protein Homology CDS 558903 559154 . - 0 ID=cds532;Parent=gene543;Dbxref=Genbank:WP_003808570.1;Name=WP_003808570.1;gbkey=CDS;product=ferredoxin;protein_id=WP_003808570.1;transl_table=11 NZ_CP010961.1 RefSeq gene 559209 559718 . - . ID=gene544;Name=RD04_RS02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02725;old_locus_tag=RD04_02715 NZ_CP010961.1 Protein Homology CDS 559209 559718 . - 0 ID=cds533;Parent=gene544;Dbxref=Genbank:WP_003808574.1;Name=WP_003808574.1;gbkey=CDS;product=phosphopantetheine adenylyltransferase;protein_id=WP_003808574.1;transl_table=11 NZ_CP010961.1 RefSeq gene 559739 560383 . - . ID=gene545;Name=RD04_RS02730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02730;old_locus_tag=RD04_02720 NZ_CP010961.1 Protein Homology CDS 559739 560383 . - 0 ID=cds534;Parent=gene545;Dbxref=Genbank:WP_042143310.1;Name=WP_042143310.1;gbkey=CDS;product=methyltransferase;protein_id=WP_042143310.1;transl_table=11 NZ_CP010961.1 RefSeq gene 560435 561538 . + . ID=gene546;Name=RD04_RS02735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02735;old_locus_tag=RD04_02725 NZ_CP010961.1 Protein Homology CDS 560435 561538 . + 0 ID=cds535;Parent=gene546;Dbxref=Genbank:WP_023853086.1;Name=WP_023853086.1;gbkey=CDS;product=signal recognition particle-docking protein FtsY;protein_id=WP_023853086.1;transl_table=11 NZ_CP010961.1 RefSeq gene 561585 562658 . - . ID=gene547;Name=RD04_RS02740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02740;old_locus_tag=RD04_02730 NZ_CP010961.1 Protein Homology CDS 561585 562658 . - 0 ID=cds536;Parent=gene547;Dbxref=Genbank:WP_019247236.1;Name=WP_019247236.1;gbkey=CDS;product=CHAD domain-containing protein;protein_id=WP_019247236.1;transl_table=11 NZ_CP010961.1 RefSeq gene 562677 563168 . - . ID=gene548;Name=RD04_RS02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02745;old_locus_tag=RD04_02735 NZ_CP010961.1 Protein Homology CDS 562677 563168 . - 0 ID=cds537;Parent=gene548;Dbxref=Genbank:WP_019247235.1;Name=WP_019247235.1;gbkey=CDS;product=CYTH domain-containing protein;protein_id=WP_019247235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 563365 564186 . - . ID=gene549;Name=RD04_RS02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02750;old_locus_tag=RD04_02740 NZ_CP010961.1 Protein Homology CDS 563365 564186 . - 0 ID=cds538;Parent=gene549;Dbxref=Genbank:WP_010931496.1;Name=WP_010931496.1;gbkey=CDS;product=phosphonate ABC transporter%2C permease protein PhnE;protein_id=WP_010931496.1;transl_table=11 NZ_CP010961.1 RefSeq gene 564183 565073 . - . ID=gene550;Name=RD04_RS02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02755;old_locus_tag=RD04_02745 NZ_CP010961.1 Protein Homology CDS 564183 565073 . - 0 ID=cds539;Parent=gene550;Dbxref=Genbank:WP_033446133.1;Name=WP_033446133.1;gbkey=CDS;product=phosphonate ABC transporter%2C permease protein PhnE;protein_id=WP_033446133.1;transl_table=11 NZ_CP010961.1 RefSeq gene 565070 565555 . - . ID=gene551;Name=RD04_RS02760;end_range=565555,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS02760;old_locus_tag=RD04_02750;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 565070 565555 . - 0 ID=cds540;Parent=gene551;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=565555,.;gbkey=CDS;partial=true;product=phosphonate ABC transporter ATP-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 565549 566499 . - . ID=gene552;Name=RD04_RS02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02765;old_locus_tag=RD04_02755 NZ_CP010961.1 Protein Homology CDS 565549 566499 . - 0 ID=cds541;Parent=gene552;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 566587 566889 . - . ID=gene553;Name=RD04_RS02770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS02770;old_locus_tag=RD04_02760;partial=true;pseudo=true;start_range=.,566587 NZ_CP010961.1 Protein Homology CDS 566587 566889 . - 0 ID=cds542;Parent=gene553;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=phosphonate ABC transporter ATP-binding protein;pseudo=true;start_range=.,566587;transl_table=11 NZ_CP010961.1 RefSeq gene 566892 567899 . - . ID=gene554;Name=RD04_RS02775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02775;old_locus_tag=RD04_02765 NZ_CP010961.1 Protein Homology CDS 566892 567899 . - 0 ID=cds543;Parent=gene554;Dbxref=Genbank:WP_010931499.1;Name=WP_010931499.1;gbkey=CDS;product=phosphonate ABC transporter substrate-binding protein;protein_id=WP_010931499.1;transl_table=11 NZ_CP010961.1 RefSeq gene 568048 568875 . - . ID=gene555;Name=RD04_RS02780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02780;old_locus_tag=RD04_02770 NZ_CP010961.1 Protein Homology CDS 568048 568875 . - 0 ID=cds544;Parent=gene555;Dbxref=Genbank:WP_003808594.1;Name=WP_003808594.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003808594.1;transl_table=11 NZ_CP010961.1 RefSeq gene 568881 569678 . - . ID=gene556;Name=RD04_RS02785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02785;old_locus_tag=RD04_02775 NZ_CP010961.1 Protein Homology CDS 568881 569678 . - 0 ID=cds545;Parent=gene556;Dbxref=Genbank:WP_010931500.1;Name=WP_010931500.1;gbkey=CDS;product=haloacid dehalogenase;protein_id=WP_010931500.1;transl_table=11 NZ_CP010961.1 RefSeq gene 569824 570999 . + . ID=gene557;Name=RD04_RS02790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02790;old_locus_tag=RD04_02780 NZ_CP010961.1 Protein Homology CDS 569824 570999 . + 0 ID=cds546;Parent=gene557;Dbxref=Genbank:WP_010931501.1;Name=WP_010931501.1;Note=bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein%3B functions in riboflavin synthesis;gbkey=CDS;product=3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=WP_010931501.1;transl_table=11 NZ_CP010961.1 RefSeq gene 571013 571534 . + . ID=gene558;Name=RD04_RS02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02795;old_locus_tag=RD04_02785 NZ_CP010961.1 Protein Homology CDS 571013 571534 . + 0 ID=cds547;Parent=gene558;Dbxref=Genbank:WP_010931502.1;Name=WP_010931502.1;gbkey=CDS;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_010931502.1;transl_table=11 NZ_CP010961.1 RefSeq gene 571506 572006 . + . ID=gene559;Name=RD04_RS02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02800;old_locus_tag=RD04_02790 NZ_CP010961.1 Protein Homology CDS 571506 572006 . + 0 ID=cds548;Parent=gene559;Dbxref=Genbank:WP_033446134.1;Name=WP_033446134.1;gbkey=CDS;product=N utilization substance protein B;protein_id=WP_033446134.1;transl_table=11 NZ_CP010961.1 RefSeq gene 572064 573062 . + . ID=gene560;Name=RD04_RS02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02805;old_locus_tag=RD04_02795 NZ_CP010961.1 Protein Homology CDS 572064 573062 . + 0 ID=cds549;Parent=gene560;Dbxref=Genbank:WP_023853077.1;Name=WP_023853077.1;gbkey=CDS;product=thiamine-monophosphate kinase;protein_id=WP_023853077.1;transl_table=11 NZ_CP010961.1 RefSeq gene 573095 573601 . + . ID=gene561;Name=RD04_RS02810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02810;old_locus_tag=RD04_02800 NZ_CP010961.1 Protein Homology CDS 573095 573601 . + 0 ID=cds550;Parent=gene561;Dbxref=Genbank:WP_010931504.1;Name=WP_010931504.1;gbkey=CDS;product=phosphatidylglycerophosphatase A;protein_id=WP_010931504.1;transl_table=11 NZ_CP010961.1 RefSeq gene 573598 574164 . + . ID=gene562;Name=RD04_RS02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02815;old_locus_tag=RD04_02805 NZ_CP010961.1 Protein Homology CDS 573598 574164 . + 0 ID=cds551;Parent=gene562;Dbxref=Genbank:WP_003808604.1;Name=WP_003808604.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003808604.1;transl_table=11 NZ_CP010961.1 RefSeq gene 574302 575123 . - . ID=gene563;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=RD04_RS02820;old_locus_tag=RD04_02810 NZ_CP010961.1 Protein Homology CDS 574302 575123 . - 0 ID=cds552;Parent=gene563;Dbxref=Genbank:WP_003808606.1;Name=WP_003808606.1;Note=type 2 subfamily%3B involved in last step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate to UMP and carbon dioxide%3B OMP decarboxylase%3B OMPDCase%3B OMPdecase;gbkey=CDS;gene=pyrF;product=orotidine 5'-phosphate decarboxylase;protein_id=WP_003808606.1;transl_table=11 NZ_CP010961.1 RefSeq gene 575131 576450 . - . ID=gene564;Name=RD04_RS02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02825;old_locus_tag=RD04_02815 NZ_CP010961.1 Protein Homology CDS 575131 576450 . - 0 ID=cds553;Parent=gene564;Dbxref=Genbank:WP_010931505.1;Name=WP_010931505.1;gbkey=CDS;product=NADH dehydrogenase;protein_id=WP_010931505.1;transl_table=11 NZ_CP010961.1 RefSeq gene 576501 576899 . - . ID=gene565;Name=RD04_RS02830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02830;old_locus_tag=RD04_02820 NZ_CP010961.1 Protein Homology CDS 576501 576899 . - 0 ID=cds554;Parent=gene565;Dbxref=Genbank:WP_003808610.1;Name=WP_003808610.1;gbkey=CDS;product=diacylglycerol kinase;protein_id=WP_003808610.1;transl_table=11 NZ_CP010961.1 RefSeq gene 576988 577878 . - . ID=gene566;Name=RD04_RS02835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02835;old_locus_tag=RD04_02825 NZ_CP010961.1 Protein Homology CDS 576988 577878 . - 0 ID=cds555;Parent=gene566;Dbxref=Genbank:WP_003808614.1;Name=WP_003808614.1;gbkey=CDS;product=membrane protein;protein_id=WP_003808614.1;transl_table=11 NZ_CP010961.1 RefSeq gene 578180 581212 . + . ID=gene567;Name=RD04_RS02840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02840;old_locus_tag=RD04_02830 NZ_CP010961.1 Protein Homology CDS 578180 581212 . + 0 ID=cds556;Parent=gene567;Dbxref=Genbank:WP_010931506.1;Name=WP_010931506.1;gbkey=CDS;product=BrkA autotransporter;protein_id=WP_010931506.1;transl_table=11 NZ_CP010961.1 RefSeq gene 581316 582959 . - . ID=gene568;Name=groEL;gbkey=Gene;gene=groEL;gene_biotype=protein_coding;locus_tag=RD04_RS02845;old_locus_tag=RD04_02835 NZ_CP010961.1 Protein Homology CDS 581316 582959 . - 0 ID=cds557;Parent=gene568;Dbxref=Genbank:WP_010931507.1;Name=WP_010931507.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth;gbkey=CDS;gene=groEL;product=molecular chaperone GroEL;protein_id=WP_010931507.1;transl_table=11 NZ_CP010961.1 RefSeq gene 582992 583279 . - . ID=gene569;Name=RD04_RS02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02850;old_locus_tag=RD04_02840 NZ_CP010961.1 Protein Homology CDS 582992 583279 . - 0 ID=cds558;Parent=gene569;Dbxref=Genbank:WP_003808621.1;Name=WP_003808621.1;gbkey=CDS;product=molecular chaperone GroES;protein_id=WP_003808621.1;transl_table=11 NZ_CP010961.1 RefSeq gene 583613 584242 . - . ID=gene570;Name=RD04_RS02855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02855;old_locus_tag=RD04_02845 NZ_CP010961.1 Protein Homology CDS 583613 584242 . - 0 ID=cds559;Parent=gene570;Dbxref=Genbank:WP_010926000.1;Name=WP_010926000.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010926000.1;transl_table=11 NZ_CP010961.1 RefSeq gene 584239 584940 . - . ID=gene571;Name=RD04_RS02860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02860;old_locus_tag=RD04_02850 NZ_CP010961.1 Protein Homology CDS 584239 584940 . - 0 ID=cds560;Parent=gene571;Dbxref=Genbank:WP_003808629.1;Name=WP_003808629.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003808629.1;transl_table=11 NZ_CP010961.1 RefSeq gene 584989 585624 . - . ID=gene572;Name=RD04_RS02865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02865;old_locus_tag=RD04_02855 NZ_CP010961.1 Protein Homology CDS 584989 585624 . - 0 ID=cds561;Parent=gene572;Dbxref=Genbank:WP_010931508.1;Name=WP_010931508.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931508.1;transl_table=11 NZ_CP010961.1 RefSeq gene 585668 587377 . - . ID=gene573;Name=RD04_RS02870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02870;old_locus_tag=RD04_02860 NZ_CP010961.1 Protein Homology CDS 585668 587377 . - 0 ID=cds562;Parent=gene573;Dbxref=Genbank:WP_010931509.1;Name=WP_010931509.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_010931509.1;transl_table=11 NZ_CP010961.1 RefSeq gene 587439 588389 . - . ID=gene574;Name=RD04_RS02875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02875;old_locus_tag=RD04_02865 NZ_CP010961.1 Protein Homology CDS 587439 588389 . - 0 ID=cds563;Parent=gene574;Dbxref=Genbank:WP_010931510.1;Name=WP_010931510.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931510.1;transl_table=11 NZ_CP010961.1 RefSeq gene 588995 590008 . - . ID=gene575;Name=RD04_RS02880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02880;old_locus_tag=RD04_02870 NZ_CP010961.1 Protein Homology CDS 588995 590008 . - 0 ID=cds564;Parent=gene575;Dbxref=Genbank:WP_010931511.1;Name=WP_010931511.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931511.1;transl_table=11 NZ_CP010961.1 RefSeq gene 590056 591801 . + . ID=gene576;Name=RD04_RS02885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02885;old_locus_tag=RD04_02875 NZ_CP010961.1 Protein Homology CDS 590056 591801 . + 0 ID=cds565;Parent=gene576;Dbxref=Genbank:WP_010931512.1;Name=WP_010931512.1;gbkey=CDS;product=FAD-binding dehydrogenase;protein_id=WP_010931512.1;transl_table=11 NZ_CP010961.1 RefSeq gene 592080 592982 . + . ID=gene577;Name=RD04_RS02890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02890;old_locus_tag=RD04_02880 NZ_CP010961.1 GeneMarkS+ CDS 592080 592982 . + 0 ID=cds566;Parent=gene577;Dbxref=Genbank:WP_041337089.1;Name=WP_041337089.1;gbkey=CDS;product=integrase;protein_id=WP_041337089.1;transl_table=11 NZ_CP010961.1 RefSeq gene 593064 593711 . + . ID=gene578;Name=RD04_RS02895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02895;old_locus_tag=RD04_02885 NZ_CP010961.1 Protein Homology CDS 593064 593711 . + 0 ID=cds567;Parent=gene578;Dbxref=Genbank:WP_003813004.1;Name=WP_003813004.1;gbkey=CDS;product=amidase;protein_id=WP_003813004.1;transl_table=11 NZ_CP010961.1 RefSeq gene 593726 595153 . - . ID=gene579;Name=RD04_RS02900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02900;old_locus_tag=RD04_02890 NZ_CP010961.1 Protein Homology CDS 593726 595153 . - 0 ID=cds568;Parent=gene579;Dbxref=Genbank:WP_010931513.1;Name=WP_010931513.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_010931513.1;transl_table=11 NZ_CP010961.1 RefSeq gene 595319 595924 . - . ID=gene580;Name=RD04_RS02905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02905;old_locus_tag=RD04_02895 NZ_CP010961.1 Protein Homology CDS 595319 595924 . - 0 ID=cds569;Parent=gene580;Dbxref=Genbank:WP_003813001.1;Name=WP_003813001.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813001.1;transl_table=11 NZ_CP010961.1 RefSeq gene 595960 596283 . + . ID=gene581;Name=RD04_RS02910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02910;old_locus_tag=RD04_02900 NZ_CP010961.1 Protein Homology CDS 595960 596283 . + 0 ID=cds570;Parent=gene581;Dbxref=Genbank:WP_014486106.1;Name=WP_014486106.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014486106.1;transl_table=11 NZ_CP010961.1 RefSeq gene 596305 596571 . - . ID=gene582;Name=RD04_RS02915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02915;old_locus_tag=RD04_02905 NZ_CP010961.1 Protein Homology CDS 596305 596571 . - 0 ID=cds571;Parent=gene582;Dbxref=Genbank:WP_003812997.1;Name=WP_003812997.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812997.1;transl_table=11 NZ_CP010961.1 RefSeq gene 596901 597137 . + . ID=gene583;Name=RD04_RS02920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02920;old_locus_tag=RD04_02910 NZ_CP010961.1 Protein Homology CDS 596901 597137 . + 0 ID=cds572;Parent=gene583;Dbxref=Genbank:WP_003812995.1;Name=WP_003812995.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812995.1;transl_table=11 NZ_CP010961.1 RefSeq gene 597154 597411 . + . ID=gene584;Name=RD04_RS02925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02925;old_locus_tag=RD04_02915 NZ_CP010961.1 Protein Homology CDS 597154 597411 . + 0 ID=cds573;Parent=gene584;Dbxref=Genbank:WP_003812993.1;Name=WP_003812993.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812993.1;transl_table=11 NZ_CP010961.1 RefSeq gene 597516 597592 . - . ID=gene585;Name=RD04_RS02930;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS02930;old_locus_tag=RD04_02920 NZ_CP010961.1 tRNAscan-SE tRNA 597516 597592 . - . ID=rna11;Parent=gene585;anticodon=(pos:complement(597556..597558));gbkey=tRNA;product=tRNA-Met NZ_CP010961.1 tRNAscan-SE exon 597516 597592 . - . ID=id13;Parent=rna11;anticodon=(pos:complement(597556..597558));gbkey=tRNA;product=tRNA-Met NZ_CP010961.1 RefSeq gene 597683 598985 . - . ID=gene586;Name=RD04_RS02935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS02935;old_locus_tag=RD04_02925;pseudo=true NZ_CP010961.1 Protein Homology CDS 597683 598985 . - 0 ID=cds574;Parent=gene586;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 599025 599999 . - . ID=gene587;Name=RD04_RS02940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02940;old_locus_tag=RD04_02930 NZ_CP010961.1 Protein Homology CDS 599025 599999 . - 0 ID=cds575;Parent=gene587;Dbxref=Genbank:WP_010931515.1;Name=WP_010931515.1;gbkey=CDS;product=dimethylhistidine N-methyltransferase;protein_id=WP_010931515.1;transl_table=11 NZ_CP010961.1 RefSeq gene 600331 600930 . + . ID=gene588;Name=RD04_RS02945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02945;old_locus_tag=RD04_02935 NZ_CP010961.1 Protein Homology CDS 600331 600930 . + 0 ID=cds576;Parent=gene588;Dbxref=Genbank:WP_010931516.1;Name=WP_010931516.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931516.1;transl_table=11 NZ_CP010961.1 RefSeq gene 600918 602348 . + . ID=gene589;Name=RD04_RS02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02950;old_locus_tag=RD04_02940 NZ_CP010961.1 Protein Homology CDS 600918 602348 . + 0 ID=cds577;Parent=gene589;Dbxref=Genbank:WP_010928587.1;Name=WP_010928587.1;gbkey=CDS;product=cardiolipin synthase B;protein_id=WP_010928587.1;transl_table=11 NZ_CP010961.1 RefSeq gene 602358 603308 . - . ID=gene590;Name=RD04_RS02955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02955;old_locus_tag=RD04_02945 NZ_CP010961.1 Protein Homology CDS 602358 603308 . - 0 ID=cds578;Parent=gene590;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 603407 605068 . - . ID=gene591;Name=RD04_RS02960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02960;old_locus_tag=RD04_02950 NZ_CP010961.1 Protein Homology CDS 603407 605068 . - 0 ID=cds579;Parent=gene591;Dbxref=Genbank:WP_010931517.1;Name=WP_010931517.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931517.1;transl_table=11 NZ_CP010961.1 RefSeq gene 605144 606370 . - . ID=gene592;Name=RD04_RS02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02965;old_locus_tag=RD04_02955 NZ_CP010961.1 Protein Homology CDS 605144 606370 . - 0 ID=cds580;Parent=gene592;Dbxref=Genbank:WP_023853348.1;Name=WP_023853348.1;gbkey=CDS;product=sulfur transport;protein_id=WP_023853348.1;transl_table=11 NZ_CP010961.1 RefSeq gene 606512 607459 . - . ID=gene593;Name=RD04_RS02970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02970;old_locus_tag=RD04_02960 NZ_CP010961.1 Protein Homology CDS 606512 607459 . - 0 ID=cds581;Parent=gene593;Dbxref=Genbank:WP_010931519.1;Name=WP_010931519.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931519.1;transl_table=11 NZ_CP010961.1 RefSeq gene 607584 608027 . + . ID=gene594;Name=RD04_RS02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02975;old_locus_tag=RD04_02965 NZ_CP010961.1 Protein Homology CDS 607584 608027 . + 0 ID=cds582;Parent=gene594;Dbxref=Genbank:WP_010931520.1;Name=WP_010931520.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_010931520.1;transl_table=11 NZ_CP010961.1 RefSeq gene 608121 608205 . - . ID=gene595;Name=RD04_RS02980;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS02980;old_locus_tag=RD04_02970 NZ_CP010961.1 tRNAscan-SE tRNA 608121 608205 . - . ID=rna12;Parent=gene595;anticodon=(pos:complement(608169..608171));gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 tRNAscan-SE exon 608121 608205 . - . ID=id14;Parent=rna12;anticodon=(pos:complement(608169..608171));gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 RefSeq gene 608367 608978 . + . ID=gene596;Name=RD04_RS02985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02985;old_locus_tag=RD04_02975 NZ_CP010961.1 Protein Homology CDS 608367 608978 . + 0 ID=cds583;Parent=gene596;Dbxref=Genbank:WP_010931521.1;Name=WP_010931521.1;gbkey=CDS;product=DTW domain-containing protein;protein_id=WP_010931521.1;transl_table=11 NZ_CP010961.1 RefSeq gene 609066 609150 . - . ID=gene597;Name=RD04_RS02990;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS02990;old_locus_tag=RD04_02980 NZ_CP010961.1 tRNAscan-SE tRNA 609066 609150 . - . ID=rna13;Parent=gene597;anticodon=(pos:complement(609114..609116));gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 tRNAscan-SE exon 609066 609150 . - . ID=id15;Parent=rna13;anticodon=(pos:complement(609114..609116));gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 RefSeq gene 609531 611960 . + . ID=gene598;Name=RD04_RS02995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS02995;old_locus_tag=RD04_02985 NZ_CP010961.1 Protein Homology CDS 609531 611960 . + 0 ID=cds584;Parent=gene598;Dbxref=Genbank:WP_024000927.1;Name=WP_024000927.1;gbkey=CDS;product=ribonuclease R;protein_id=WP_024000927.1;transl_table=11 NZ_CP010961.1 RefSeq gene 612085 612822 . + . ID=gene599;Name=RD04_RS03000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03000;old_locus_tag=RD04_02990 NZ_CP010961.1 Protein Homology CDS 612085 612822 . + 0 ID=cds585;Parent=gene599;Dbxref=Genbank:WP_003812973.1;Name=WP_003812973.1;gbkey=CDS;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=WP_003812973.1;transl_table=11 NZ_CP010961.1 RefSeq gene 612876 614120 . + . ID=gene600;Name=RD04_RS03005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03005;old_locus_tag=RD04_02995 NZ_CP010961.1 Protein Homology CDS 612876 614120 . + 0 ID=cds586;Parent=gene600;Dbxref=Genbank:WP_010931523.1;Name=WP_010931523.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931523.1;transl_table=11 NZ_CP010961.1 RefSeq gene 614161 614841 . + . ID=gene601;Name=RD04_RS03010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03010;old_locus_tag=RD04_03000 NZ_CP010961.1 Protein Homology CDS 614161 614841 . + 0 ID=cds587;Parent=gene601;Dbxref=Genbank:WP_003812970.1;Name=WP_003812970.1;gbkey=CDS;product=PKHD-type hydroxylase;protein_id=WP_003812970.1;transl_table=11 NZ_CP010961.1 RefSeq gene 615162 615434 . + . ID=gene602;Name=RD04_RS03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03015;old_locus_tag=RD04_03005 NZ_CP010961.1 Protein Homology CDS 615162 615434 . + 0 ID=cds588;Parent=gene602;Dbxref=Genbank:WP_003812968.1;Name=WP_003812968.1;Note=histone-like DNA-binding protein;gbkey=CDS;product=DNA-binding protein HU-beta;protein_id=WP_003812968.1;transl_table=11 NZ_CP010961.1 RefSeq gene 615543 615618 . + . ID=gene603;Name=RD04_RS03020;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS03020;old_locus_tag=RD04_03010 NZ_CP010961.1 tRNAscan-SE tRNA 615543 615618 . + . ID=rna14;Parent=gene603;anticodon=(pos:615576..615578);gbkey=tRNA;product=tRNA-Val NZ_CP010961.1 tRNAscan-SE exon 615543 615618 . + . ID=id16;Parent=rna14;anticodon=(pos:615576..615578);gbkey=tRNA;product=tRNA-Val NZ_CP010961.1 RefSeq gene 615931 616731 . + . ID=gene604;Name=RD04_RS03025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03025;old_locus_tag=RD04_03015 NZ_CP010961.1 Protein Homology CDS 615931 616731 . + 0 ID=cds589;Parent=gene604;Dbxref=Genbank:WP_010931524.1;Name=WP_010931524.1;gbkey=CDS;product=cell envelope biogenesis protein TonB;protein_id=WP_010931524.1;transl_table=11 NZ_CP010961.1 RefSeq gene 616733 617710 . + . ID=gene605;Name=RD04_RS03030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03030;old_locus_tag=RD04_03020 NZ_CP010961.1 Protein Homology CDS 616733 617710 . + 0 ID=cds590;Parent=gene605;Dbxref=Genbank:WP_010931525.1;Name=WP_010931525.1;gbkey=CDS;product=flagellar motor protein MotA;protein_id=WP_010931525.1;transl_table=11 NZ_CP010961.1 RefSeq gene 617710 618177 . + . ID=gene606;Name=RD04_RS03035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03035;old_locus_tag=RD04_03025 NZ_CP010961.1 Protein Homology CDS 617710 618177 . + 0 ID=cds591;Parent=gene606;Dbxref=Genbank:WP_003812950.1;Name=WP_003812950.1;gbkey=CDS;product=biopolymer transporter ExbD;protein_id=WP_003812950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 618260 618931 . + . ID=gene607;Name=RD04_RS03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03040;old_locus_tag=RD04_03030 NZ_CP010961.1 Protein Homology CDS 618260 618931 . + 0 ID=cds592;Parent=gene607;Dbxref=Genbank:WP_003812947.1;Name=WP_003812947.1;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_003812947.1;transl_table=11 NZ_CP010961.1 RefSeq gene 618990 620108 . + . ID=gene608;Name=RD04_RS03045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03045;old_locus_tag=RD04_03035 NZ_CP010961.1 Protein Homology CDS 618990 620108 . + 0 ID=cds593;Parent=gene608;Dbxref=Genbank:WP_003812944.1;Name=WP_003812944.1;gbkey=CDS;product=two-component sensor histidine kinase;protein_id=WP_003812944.1;transl_table=11 NZ_CP010961.1 RefSeq gene 620105 622015 . + . ID=gene609;Name=trkD;gbkey=Gene;gene=trkD;gene_biotype=protein_coding;locus_tag=RD04_RS03050;old_locus_tag=RD04_03040 NZ_CP010961.1 Protein Homology CDS 620105 622015 . + 0 ID=cds594;Parent=gene609;Dbxref=Genbank:WP_003820366.1;Name=WP_003820366.1;Note=Responsible for the low-affinity transport of potassium into the cell%3B involved in potassium ion uptake under hyper-osmotic stress at a low pH;gbkey=CDS;gene=trkD;product=potassium transporter Kup;protein_id=WP_003820366.1;transl_table=11 NZ_CP010961.1 RefSeq gene 622100 623437 . - . ID=gene610;Name=RD04_RS03055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03055;old_locus_tag=RD04_03045 NZ_CP010961.1 Protein Homology CDS 622100 623437 . - 0 ID=cds595;Parent=gene610;Dbxref=Genbank:WP_003820367.1;Name=WP_003820367.1;Note=catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis;gbkey=CDS;product=argininosuccinate synthase;protein_id=WP_003820367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 623588 624529 . - . ID=gene611;Name=RD04_RS03060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03060;old_locus_tag=RD04_03050 NZ_CP010961.1 Protein Homology CDS 623588 624529 . - 0 ID=cds596;Parent=gene611;Dbxref=Genbank:WP_003812938.1;Name=WP_003812938.1;gbkey=CDS;product=ornithine carbamoyltransferase;protein_id=WP_003812938.1;transl_table=11 NZ_CP010961.1 RefSeq gene 624581 625762 . - . ID=gene612;Name=RD04_RS03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03065;old_locus_tag=RD04_03055 NZ_CP010961.1 Protein Homology CDS 624581 625762 . - 0 ID=cds597;Parent=gene612;Dbxref=Genbank:WP_050818141.1;Name=WP_050818141.1;gbkey=CDS;product=acetylornithine aminotransferase;protein_id=WP_050818141.1;transl_table=11 NZ_CP010961.1 RefSeq gene 625972 626262 . + . ID=gene613;Name=RD04_RS03070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03070;old_locus_tag=RD04_03060 NZ_CP010961.1 Protein Homology CDS 625972 626262 . + 0 ID=cds598;Parent=gene613;Dbxref=Genbank:WP_003812933.1;Name=WP_003812933.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812933.1;transl_table=11 NZ_CP010961.1 RefSeq gene 626267 627175 . - . ID=gene614;Name=RD04_RS03075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03075;old_locus_tag=RD04_03065 NZ_CP010961.1 Protein Homology CDS 626267 627175 . - 0 ID=cds599;Parent=gene614;Dbxref=Genbank:WP_010931527.1;Name=WP_010931527.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931527.1;transl_table=11 NZ_CP010961.1 RefSeq gene 627287 628012 . - . ID=gene615;Name=RD04_RS03080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03080;old_locus_tag=RD04_03070 NZ_CP010961.1 Protein Homology CDS 627287 628012 . - 0 ID=cds600;Parent=gene615;Dbxref=Genbank:WP_010931528.1;Name=WP_010931528.1;gbkey=CDS;product=short chain dehydrogenase;protein_id=WP_010931528.1;transl_table=11 NZ_CP010961.1 RefSeq gene 628159 629112 . - . ID=gene616;Name=RD04_RS03085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03085;old_locus_tag=RD04_03075 NZ_CP010961.1 Protein Homology CDS 628159 629112 . - 0 ID=cds601;Parent=gene616;Dbxref=Genbank:WP_010931529.1;Name=WP_010931529.1;gbkey=CDS;product=hydroxyacid dehydrogenase;protein_id=WP_010931529.1;transl_table=11 NZ_CP010961.1 RefSeq gene 629215 630186 . - . ID=gene617;Name=RD04_RS03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03090;old_locus_tag=RD04_03080 NZ_CP010961.1 Protein Homology CDS 629215 630186 . - 0 ID=cds602;Parent=gene617;Dbxref=Genbank:WP_003812927.1;Name=WP_003812927.1;gbkey=CDS;product=lipoprotein;protein_id=WP_003812927.1;transl_table=11 NZ_CP010961.1 RefSeq gene 630267 630458 . - . ID=gene618;Name=RD04_RS03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03095;old_locus_tag=RD04_03085 NZ_CP010961.1 Protein Homology CDS 630267 630458 . - 0 ID=cds603;Parent=gene618;Dbxref=Genbank:WP_003812923.1;Name=WP_003812923.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812923.1;transl_table=11 NZ_CP010961.1 RefSeq gene 630666 631583 . + . ID=gene619;Name=RD04_RS03100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03100;old_locus_tag=RD04_03090 NZ_CP010961.1 Protein Homology CDS 630666 631583 . + 0 ID=cds604;Parent=gene619;Dbxref=Genbank:WP_019247473.1;Name=WP_019247473.1;gbkey=CDS;product=dihydrodipicolinate synthase family protein;protein_id=WP_019247473.1;transl_table=11 NZ_CP010961.1 RefSeq gene 631652 632416 . + . ID=gene620;Name=RD04_RS03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03105;old_locus_tag=RD04_03095 NZ_CP010961.1 Protein Homology CDS 631652 632416 . + 0 ID=cds605;Parent=gene620;Dbxref=Genbank:WP_023853346.1;Name=WP_023853346.1;gbkey=CDS;product=FCD domain protein;protein_id=WP_023853346.1;transl_table=11 NZ_CP010961.1 RefSeq gene 632515 633465 . + . ID=gene621;Name=RD04_RS03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03110;old_locus_tag=RD04_03100 NZ_CP010961.1 Protein Homology CDS 632515 633465 . + 0 ID=cds606;Parent=gene621;Dbxref=Genbank:WP_010931532.1;Name=WP_010931532.1;gbkey=CDS;product=transposase;protein_id=WP_010931532.1;transl_table=11 NZ_CP010961.1 RefSeq gene 633425 634684 . - . ID=gene622;Name=RD04_RS03115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03115;old_locus_tag=RD04_03105 NZ_CP010961.1 Protein Homology CDS 633425 634684 . - 0 ID=cds607;Parent=gene622;Dbxref=Genbank:WP_047122817.1;Name=WP_047122817.1;gbkey=CDS;product=transporter;protein_id=WP_047122817.1;transl_table=11 NZ_CP010961.1 RefSeq gene 634706 635599 . + . ID=gene623;Name=RD04_RS03120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03120;old_locus_tag=RD04_03110 NZ_CP010961.1 Protein Homology CDS 634706 635599 . + 0 ID=cds608;Parent=gene623;Dbxref=Genbank:WP_033446137.1;Name=WP_033446137.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_033446137.1;transl_table=11 NZ_CP010961.1 RefSeq gene 635666 636184 . - . ID=gene624;Name=RD04_RS03125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03125;old_locus_tag=RD04_03115 NZ_CP010961.1 Protein Homology CDS 635666 636184 . - 0 ID=cds609;Parent=gene624;Dbxref=Genbank:WP_003813887.1;Name=WP_003813887.1;gbkey=CDS;product=carboxymuconolactone decarboxylase;protein_id=WP_003813887.1;transl_table=11 NZ_CP010961.1 RefSeq gene 636240 636788 . - . ID=gene625;Name=RD04_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03130;old_locus_tag=RD04_03120 NZ_CP010961.1 Protein Homology CDS 636240 636788 . - 0 ID=cds610;Parent=gene625;Dbxref=Genbank:WP_003813886.1;Name=WP_003813886.1;gbkey=CDS;product=peroxiredoxin;protein_id=WP_003813886.1;transl_table=11 NZ_CP010961.1 RefSeq gene 636851 637564 . - . ID=gene626;Name=RD04_RS03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03135;old_locus_tag=RD04_03125 NZ_CP010961.1 Protein Homology CDS 636851 637564 . - 0 ID=cds611;Parent=gene626;Dbxref=Genbank:WP_019247227.1;Name=WP_019247227.1;gbkey=CDS;product=two-component sensor histidine kinase;protein_id=WP_019247227.1;transl_table=11 NZ_CP010961.1 RefSeq gene 637563 638279 . + . ID=gene627;Name=RD04_RS03140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03140;old_locus_tag=RD04_03130 NZ_CP010961.1 Protein Homology CDS 637563 638279 . + 0 ID=cds612;Parent=gene627;Dbxref=Genbank:WP_019248733.1;Name=WP_019248733.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248733.1;transl_table=11 NZ_CP010961.1 RefSeq gene 638281 639015 . - . ID=gene628;Name=RD04_RS03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03145;old_locus_tag=RD04_03135 NZ_CP010961.1 Protein Homology CDS 638281 639015 . - 0 ID=cds613;Parent=gene628;Dbxref=Genbank:WP_003813882.1;Name=WP_003813882.1;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_003813882.1;transl_table=11 NZ_CP010961.1 RefSeq gene 639145 640392 . + . ID=gene629;Name=RD04_RS03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03150;old_locus_tag=RD04_03140 NZ_CP010961.1 Protein Homology CDS 639145 640392 . + 0 ID=cds614;Parent=gene629;Dbxref=Genbank:WP_010931534.1;Name=WP_010931534.1;gbkey=CDS;product=tRNA threonylcarbamoyladenosine biosynthesis protein TsaB;protein_id=WP_010931534.1;transl_table=11 NZ_CP010961.1 RefSeq gene 640379 641275 . + . ID=gene630;Name=RD04_RS03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03155;old_locus_tag=RD04_03145 NZ_CP010961.1 Protein Homology CDS 640379 641275 . + 0 ID=cds615;Parent=gene630;Dbxref=Genbank:WP_010931535.1;Name=WP_010931535.1;gbkey=CDS;product=uracil-DNA glycosylase;protein_id=WP_010931535.1;transl_table=11 NZ_CP010961.1 RefSeq gene 641294 642604 . - . ID=gene631;Name=RD04_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03160;old_locus_tag=RD04_03150 NZ_CP010961.1 Protein Homology CDS 641294 642604 . - 0 ID=cds616;Parent=gene631;Dbxref=Genbank:WP_010931536.1;Name=WP_010931536.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010931536.1;transl_table=11 NZ_CP010961.1 RefSeq gene 642867 646394 . + . ID=gene632;Name=RD04_RS03165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03165;old_locus_tag=RD04_03155 NZ_CP010961.1 Protein Homology CDS 642867 646394 . + 0 ID=cds617;Parent=gene632;Dbxref=Genbank:WP_010931537.1;Name=WP_010931537.1;gbkey=CDS;product=chromosome segregation protein SMC;protein_id=WP_010931537.1;transl_table=11 NZ_CP010961.1 RefSeq gene 646439 647497 . + . ID=gene633;Name=RD04_RS03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03170;old_locus_tag=RD04_03160 NZ_CP010961.1 Protein Homology CDS 646439 647497 . + 0 ID=cds618;Parent=gene633;Dbxref=Genbank:WP_003821312.1;Name=WP_003821312.1;gbkey=CDS;product=membrane protein;protein_id=WP_003821312.1;transl_table=11 NZ_CP010961.1 RefSeq gene 647497 649587 . + . ID=gene634;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=RD04_RS03175;old_locus_tag=RD04_03165 NZ_CP010961.1 Protein Homology CDS 647497 649587 . + 0 ID=cds619;Parent=gene634;Dbxref=Genbank:WP_010931538.1;Name=WP_010931538.1;Note=this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction%3B essential for DNA replication and repair of damaged DNA%3B similar to ligase LigB;gbkey=CDS;gene=ligA;product=DNA ligase (NAD(+)) LigA;protein_id=WP_010931538.1;transl_table=11 NZ_CP010961.1 RefSeq gene 649672 650448 . - . ID=gene635;Name=RD04_RS03180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03180;old_locus_tag=RD04_03170 NZ_CP010961.1 Protein Homology CDS 649672 650448 . - 0 ID=cds620;Parent=gene635;Dbxref=Genbank:WP_003821314.1;Name=WP_003821314.1;gbkey=CDS;product=peptidylprolyl isomerase;protein_id=WP_003821314.1;transl_table=11 NZ_CP010961.1 RefSeq gene 650474 650758 . - . ID=gene636;Name=RD04_RS03185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03185;old_locus_tag=RD04_03175 NZ_CP010961.1 Protein Homology CDS 650474 650758 . - 0 ID=cds621;Parent=gene636;Dbxref=Genbank:WP_010931539.1;Name=WP_010931539.1;gbkey=CDS;product=BolA family transcriptional regulator;protein_id=WP_010931539.1;transl_table=11 NZ_CP010961.1 RefSeq gene 650780 651349 . - . ID=gene637;Name=RD04_RS03190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03190;old_locus_tag=RD04_03180 NZ_CP010961.1 Protein Homology CDS 650780 651349 . - 0 ID=cds622;Parent=gene637;Dbxref=Genbank:WP_003813872.1;Name=WP_003813872.1;gbkey=CDS;product=intracellular septation protein A;protein_id=WP_003813872.1;transl_table=11 NZ_CP010961.1 RefSeq gene 651346 651747 . - . ID=gene638;Name=RD04_RS03195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03195;old_locus_tag=RD04_03185 NZ_CP010961.1 Protein Homology CDS 651346 651747 . - 0 ID=cds623;Parent=gene638;Dbxref=Genbank:WP_010931540.1;Name=WP_010931540.1;gbkey=CDS;product=peptide-methionine (R)-S-oxide reductase;protein_id=WP_010931540.1;transl_table=11 NZ_CP010961.1 RefSeq gene 651799 652476 . + . ID=gene639;Name=RD04_RS03200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03200;old_locus_tag=RD04_03190 NZ_CP010961.1 Protein Homology CDS 651799 652476 . + 0 ID=cds624;Parent=gene639;Dbxref=Genbank:WP_003813870.1;Name=WP_003813870.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003813870.1;transl_table=11 NZ_CP010961.1 RefSeq gene 652473 653072 . + . ID=gene640;Name=RD04_RS03205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03205;old_locus_tag=RD04_03195 NZ_CP010961.1 Protein Homology CDS 652473 653072 . + 0 ID=cds625;Parent=gene640;Dbxref=Genbank:WP_010931541.1;Name=WP_010931541.1;gbkey=CDS;product=cobalt ABC transporter;protein_id=WP_010931541.1;transl_table=11 NZ_CP010961.1 RefSeq gene 653116 653673 . + . ID=gene641;Name=RD04_RS03210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03210;old_locus_tag=RD04_03200 NZ_CP010961.1 Protein Homology CDS 653116 653673 . + 0 ID=cds626;Parent=gene641;Dbxref=Genbank:WP_010931542.1;Name=WP_010931542.1;gbkey=CDS;product=biotin transporter BioY;protein_id=WP_010931542.1;transl_table=11 NZ_CP010961.1 RefSeq gene 653906 655069 . + . ID=gene642;Name=RD04_RS03215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03215;old_locus_tag=RD04_03205 NZ_CP010961.1 Protein Homology CDS 653906 655069 . + 0 ID=cds627;Parent=gene642;Dbxref=Genbank:WP_010931543.1;Name=WP_010931543.1;gbkey=CDS;product=branched-chain amino acid ABC transporter substrate-binding protein;protein_id=WP_010931543.1;transl_table=11 NZ_CP010961.1 RefSeq gene 655231 656256 . + . ID=gene643;Name=RD04_RS03220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03220;old_locus_tag=RD04_03210 NZ_CP010961.1 Protein Homology CDS 655231 656256 . + 0 ID=cds628;Parent=gene643;Dbxref=Genbank:WP_010931544.1;Name=WP_010931544.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_010931544.1;transl_table=11 NZ_CP010961.1 RefSeq gene 656262 658058 . + . ID=gene644;Name=RD04_RS03225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03225;old_locus_tag=RD04_03215 NZ_CP010961.1 GeneMarkS+ CDS 656262 658058 . + 0 ID=cds629;Parent=gene644;Dbxref=Genbank:WP_010931545.1;Name=WP_010931545.1;gbkey=CDS;product=metal-dependent hydrolase;protein_id=WP_010931545.1;transl_table=11 NZ_CP010961.1 RefSeq gene 658105 658944 . - . ID=gene645;Name=RD04_RS03230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03230;old_locus_tag=RD04_03220 NZ_CP010961.1 Protein Homology CDS 658105 658944 . - 0 ID=cds630;Parent=gene645;Dbxref=Genbank:WP_003813863.1;Name=WP_003813863.1;gbkey=CDS;product=branched chain amino acid aminotransferase;protein_id=WP_003813863.1;transl_table=11 NZ_CP010961.1 RefSeq gene 658976 659974 . - . ID=gene646;Name=RD04_RS03235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03235;old_locus_tag=RD04_03225 NZ_CP010961.1 Protein Homology CDS 658976 659974 . - 0 ID=cds631;Parent=gene646;Dbxref=Genbank:WP_003821320.1;Name=WP_003821320.1;gbkey=CDS;product=glycine/betaine ABC transporter substrate-binding protein;protein_id=WP_003821320.1;transl_table=11 NZ_CP010961.1 RefSeq gene 660070 661047 . - . ID=gene647;Name=RD04_RS03240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03240;old_locus_tag=RD04_03230 NZ_CP010961.1 Protein Homology CDS 660070 661047 . - 0 ID=cds632;Parent=gene647;Dbxref=Genbank:WP_010931546.1;Name=WP_010931546.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_010931546.1;transl_table=11 NZ_CP010961.1 RefSeq gene 661044 661931 . - . ID=gene648;Name=RD04_RS03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03245;old_locus_tag=RD04_03235 NZ_CP010961.1 Protein Homology CDS 661044 661931 . - 0 ID=cds633;Parent=gene648;Dbxref=Genbank:WP_010931547.1;Name=WP_010931547.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_010931547.1;transl_table=11 NZ_CP010961.1 RefSeq gene 662023 663237 . - . ID=gene649;Name=RD04_RS03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03250;old_locus_tag=RD04_03240 NZ_CP010961.1 Protein Homology CDS 662023 663237 . - 0 ID=cds634;Parent=gene649;Dbxref=Genbank:WP_010931548.1;Name=WP_010931548.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931548.1;transl_table=11 NZ_CP010961.1 RefSeq gene 663296 664006 . - . ID=gene650;Name=RD04_RS03255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03255;old_locus_tag=RD04_03245 NZ_CP010961.1 Protein Homology CDS 663296 664006 . - 0 ID=cds635;Parent=gene650;Dbxref=Genbank:WP_003813858.1;Name=WP_003813858.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003813858.1;transl_table=11 NZ_CP010961.1 RefSeq gene 664003 664776 . - . ID=gene651;Name=RD04_RS03260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03260;old_locus_tag=RD04_03250 NZ_CP010961.1 Protein Homology CDS 664003 664776 . - 0 ID=cds636;Parent=gene651;Dbxref=Genbank:WP_003821323.1;Name=WP_003821323.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003821323.1;transl_table=11 NZ_CP010961.1 RefSeq gene 665035 665670 . - . ID=gene652;Name=RD04_RS03265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03265;old_locus_tag=RD04_03255 NZ_CP010961.1 Protein Homology CDS 665035 665670 . - 0 ID=cds637;Parent=gene652;Dbxref=Genbank:WP_003813856.1;Name=WP_003813856.1;gbkey=CDS;product=endonuclease III;protein_id=WP_003813856.1;transl_table=11 NZ_CP010961.1 RefSeq gene 665667 666308 . - . ID=gene653;Name=RD04_RS03270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03270;old_locus_tag=RD04_03260 NZ_CP010961.1 Protein Homology CDS 665667 666308 . - 0 ID=cds638;Parent=gene653;Dbxref=Genbank:WP_010929011.1;Name=WP_010929011.1;gbkey=CDS;product=ferredoxin;protein_id=WP_010929011.1;transl_table=11 NZ_CP010961.1 RefSeq gene 666364 667590 . - . ID=gene654;Name=RD04_RS03275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03275;old_locus_tag=RD04_03265 NZ_CP010961.1 Protein Homology CDS 666364 667590 . - 0 ID=cds639;Parent=gene654;Dbxref=Genbank:WP_003821325.1;Name=WP_003821325.1;gbkey=CDS;product=intracellular PHB depolymerase;protein_id=WP_003821325.1;transl_table=11 NZ_CP010961.1 RefSeq gene 667736 668533 . - . ID=gene655;Name=RD04_RS03280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03280;old_locus_tag=RD04_03270 NZ_CP010961.1 Protein Homology CDS 667736 668533 . - 0 ID=cds640;Parent=gene655;Dbxref=Genbank:WP_010931550.1;Name=WP_010931550.1;gbkey=CDS;product=ferredoxin--NADP(+) reductase;protein_id=WP_010931550.1;transl_table=11 NZ_CP010961.1 RefSeq gene 668579 668902 . - . ID=gene656;Name=RD04_RS03285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03285;old_locus_tag=RD04_03275 NZ_CP010961.1 Protein Homology CDS 668579 668902 . - 0 ID=cds641;Parent=gene656;Dbxref=Genbank:WP_010931551.1;Name=WP_010931551.1;gbkey=CDS;product=ferredoxin;protein_id=WP_010931551.1;transl_table=11 NZ_CP010961.1 RefSeq gene 669069 670244 . + . ID=gene657;Name=RD04_RS03290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03290;old_locus_tag=RD04_03280 NZ_CP010961.1 Protein Homology CDS 669069 670244 . + 0 ID=cds642;Parent=gene657;Dbxref=Genbank:WP_023995174.1;Name=WP_023995174.1;gbkey=CDS;product=nicotinate phosphoribosyltransferase;protein_id=WP_023995174.1;transl_table=11 NZ_CP010961.1 RefSeq gene 670296 670646 . + . ID=gene658;Name=RD04_RS03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03295;old_locus_tag=RD04_03285 NZ_CP010961.1 Protein Homology CDS 670296 670646 . + 0 ID=cds643;Parent=gene658;Dbxref=Genbank:WP_003813850.1;Name=WP_003813850.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813850.1;transl_table=11 NZ_CP010961.1 RefSeq gene 670805 671314 . - . ID=gene659;Name=RD04_RS03300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03300;old_locus_tag=RD04_03290 NZ_CP010961.1 Protein Homology CDS 670805 671314 . - 0 ID=cds644;Parent=gene659;Dbxref=Genbank:WP_003821327.1;Name=WP_003821327.1;gbkey=CDS;product=flavodoxin;protein_id=WP_003821327.1;transl_table=11 NZ_CP010961.1 RefSeq gene 671311 672144 . - . ID=gene660;Name=RD04_RS03305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03305;old_locus_tag=RD04_03295 NZ_CP010961.1 Protein Homology CDS 671311 672144 . - 0 ID=cds645;Parent=gene660;Dbxref=Genbank:WP_003821329.1;Name=WP_003821329.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003821329.1;transl_table=11 NZ_CP010961.1 RefSeq gene 672228 674441 . + . ID=gene661;Name=RD04_RS03310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03310;old_locus_tag=RD04_03300 NZ_CP010961.1 Protein Homology CDS 672228 674441 . + 0 ID=cds646;Parent=gene661;Dbxref=Genbank:WP_010931553.1;Name=WP_010931553.1;gbkey=CDS;product=GTP pyrophosphokinase;protein_id=WP_010931553.1;transl_table=11 NZ_CP010961.1 RefSeq gene 674518 675669 . + . ID=gene662;Name=RD04_RS03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03315;old_locus_tag=RD04_03305 NZ_CP010961.1 Protein Homology CDS 674518 675669 . + 0 ID=cds647;Parent=gene662;Dbxref=Genbank:WP_019247175.1;Name=WP_019247175.1;Note=catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine;gbkey=CDS;product=acetylornithine deacetylase;protein_id=WP_019247175.1;transl_table=11 NZ_CP010961.1 RefSeq gene 675779 676978 . + . ID=gene663;Name=RD04_RS03320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03320;old_locus_tag=RD04_03310 NZ_CP010961.1 Protein Homology CDS 675779 676978 . + 0 ID=cds648;Parent=gene663;Dbxref=Genbank:WP_010931555.1;Name=WP_010931555.1;gbkey=CDS;product=tryptophan synthase subunit beta;protein_id=WP_010931555.1;transl_table=11 NZ_CP010961.1 RefSeq gene 676982 677839 . + . ID=gene664;Name=RD04_RS03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03325;old_locus_tag=RD04_03315 NZ_CP010961.1 Protein Homology CDS 676982 677839 . + 0 ID=cds649;Parent=gene664;Dbxref=Genbank:WP_003821334.1;Name=WP_003821334.1;gbkey=CDS;product=tryptophan synthase subunit alpha;protein_id=WP_003821334.1;transl_table=11 NZ_CP010961.1 RefSeq gene 677876 678754 . + . ID=gene665;Name=RD04_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03330;old_locus_tag=RD04_03320 NZ_CP010961.1 Protein Homology CDS 677876 678754 . + 0 ID=cds650;Parent=gene665;Dbxref=Genbank:WP_003813843.1;Name=WP_003813843.1;Note=catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer of AccA2D2 subunits;gbkey=CDS;product=acetyl-CoA carboxylase subunit beta;protein_id=WP_003813843.1;transl_table=11 NZ_CP010961.1 RefSeq gene 678964 679498 . + . ID=gene666;Name=RD04_RS03335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS03335;old_locus_tag=RD04_03325;pseudo=true NZ_CP010961.1 Protein Homology CDS 678964 679498 . + 0 ID=cds651;Parent=gene666;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 679748 680698 . + . ID=gene667;Name=RD04_RS03340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03340;old_locus_tag=RD04_03330 NZ_CP010961.1 Protein Homology CDS 679748 680698 . + 0 ID=cds652;Parent=gene667;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 680815 681882 . + . ID=gene668;Name=RD04_RS03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03345;old_locus_tag=RD04_03335 NZ_CP010961.1 Protein Homology CDS 680815 681882 . + 0 ID=cds653;Parent=gene668;Dbxref=Genbank:WP_010929827.1;Name=WP_010929827.1;gbkey=CDS;product=choloylglycine hydrolase;protein_id=WP_010929827.1;transl_table=11 NZ_CP010961.1 RefSeq gene 681958 685086 . - . ID=gene669;Name=RD04_RS03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03350;old_locus_tag=RD04_03340 NZ_CP010961.1 Protein Homology CDS 681958 685086 . - 0 ID=cds654;Parent=gene669;Dbxref=Genbank:WP_050818157.1;Name=WP_050818157.1;gbkey=CDS;product=ribonuclease E;protein_id=WP_050818157.1;transl_table=11 NZ_CP010961.1 RefSeq gene 685654 686559 . + . ID=gene670;Name=RD04_RS03355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03355;old_locus_tag=RD04_03345 NZ_CP010961.1 Protein Homology CDS 685654 686559 . + 0 ID=cds655;Parent=gene670;Dbxref=Genbank:WP_033446197.1;Name=WP_033446197.1;gbkey=CDS;product=pseudouridine synthase;protein_id=WP_033446197.1;transl_table=11 NZ_CP010961.1 RefSeq gene 686562 687233 . + . ID=gene671;Name=RD04_RS03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03360;old_locus_tag=RD04_03350 NZ_CP010961.1 Protein Homology CDS 686562 687233 . + 0 ID=cds656;Parent=gene671;Dbxref=Genbank:WP_010929830.1;Name=WP_010929830.1;gbkey=CDS;product=hydrolase;protein_id=WP_010929830.1;transl_table=11 NZ_CP010961.1 RefSeq gene 687390 688349 . + . ID=gene672;Name=RD04_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03365;old_locus_tag=RD04_03355 NZ_CP010961.1 Protein Homology CDS 687390 688349 . + 0 ID=cds657;Parent=gene672;Dbxref=Genbank:WP_010929831.1;Name=WP_010929831.1;gbkey=CDS;product=mononuclear molybdenum enzyme YedY;protein_id=WP_010929831.1;transl_table=11 NZ_CP010961.1 RefSeq gene 688357 689019 . + . ID=gene673;Name=RD04_RS03370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03370;old_locus_tag=RD04_03360 NZ_CP010961.1 Protein Homology CDS 688357 689019 . + 0 ID=cds658;Parent=gene673;Dbxref=Genbank:WP_003821340.1;Name=WP_003821340.1;gbkey=CDS;product=sulfoxide reductase heme-binding subunit YedZ;protein_id=WP_003821340.1;transl_table=11 NZ_CP010961.1 RefSeq gene 689016 689966 . - . ID=gene674;Name=RD04_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03375;old_locus_tag=RD04_03365 NZ_CP010961.1 Protein Homology CDS 689016 689966 . - 0 ID=cds659;Parent=gene674;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 690065 690967 . - . ID=gene675;Name=RD04_RS03380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03380;old_locus_tag=RD04_03370 NZ_CP010961.1 GeneMarkS+ CDS 690065 690967 . - 0 ID=cds660;Parent=gene675;Dbxref=Genbank:WP_039250534.1;Name=WP_039250534.1;gbkey=CDS;product=integrase;protein_id=WP_039250534.1;transl_table=11 NZ_CP010961.1 RefSeq gene 691137 692390 . + . ID=gene676;Name=RD04_RS03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03385;old_locus_tag=RD04_03375 NZ_CP010961.1 Protein Homology CDS 691137 692390 . + 0 ID=cds661;Parent=gene676;Dbxref=Genbank:WP_010929806.1;Name=WP_010929806.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010929806.1;transl_table=11 NZ_CP010961.1 RefSeq gene 692368 693330 . - . ID=gene677;Name=RD04_RS03390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03390;old_locus_tag=RD04_03380 NZ_CP010961.1 Protein Homology CDS 692368 693330 . - 0 ID=cds662;Parent=gene677;Dbxref=Genbank:WP_010929805.1;Name=WP_010929805.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010929805.1;transl_table=11 NZ_CP010961.1 RefSeq gene 693462 693956 . + . ID=gene678;Name=RD04_RS03395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03395;old_locus_tag=RD04_03385 NZ_CP010961.1 Protein Homology CDS 693462 693956 . + 0 ID=cds663;Parent=gene678;Dbxref=Genbank:WP_010929804.1;Name=WP_010929804.1;gbkey=CDS;product=MaoC family dehydratase;protein_id=WP_010929804.1;transl_table=11 NZ_CP010961.1 RefSeq gene 693956 695188 . + . ID=gene679;Name=RD04_RS03400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03400;old_locus_tag=RD04_03390 NZ_CP010961.1 Protein Homology CDS 693956 695188 . + 0 ID=cds664;Parent=gene679;Dbxref=Genbank:WP_010929803.1;Name=WP_010929803.1;gbkey=CDS;product=dehydratase;protein_id=WP_010929803.1;transl_table=11 NZ_CP010961.1 RefSeq gene 695323 695547 . - . ID=gene680;Name=RD04_RS03405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03405;old_locus_tag=RD04_03395 NZ_CP010961.1 Protein Homology CDS 695323 695547 . - 0 ID=cds665;Parent=gene680;Dbxref=Genbank:WP_019247318.1;Name=WP_019247318.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247318.1;transl_table=11 NZ_CP010961.1 RefSeq gene 695617 695847 . - . ID=gene681;Name=RD04_RS03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03410;old_locus_tag=RD04_03400 NZ_CP010961.1 Protein Homology CDS 695617 695847 . - 0 ID=cds666;Parent=gene681;Dbxref=Genbank:WP_019247317.1;Name=WP_019247317.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247317.1;transl_table=11 NZ_CP010961.1 RefSeq gene 695934 696215 . + . ID=gene682;Name=RD04_RS03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03415;old_locus_tag=RD04_03405 NZ_CP010961.1 Protein Homology CDS 695934 696215 . + 0 ID=cds667;Parent=gene682;Dbxref=Genbank:WP_019247316.1;Name=WP_019247316.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247316.1;transl_table=11 NZ_CP010961.1 RefSeq gene 696202 697188 . - . ID=gene683;Name=RD04_RS03420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03420;old_locus_tag=RD04_03410 NZ_CP010961.1 Protein Homology CDS 696202 697188 . - 0 ID=cds668;Parent=gene683;Dbxref=Genbank:WP_010929802.1;Name=WP_010929802.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010929802.1;transl_table=11 NZ_CP010961.1 RefSeq gene 697332 697736 . + . ID=gene684;Name=RD04_RS03425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03425;old_locus_tag=RD04_03415 NZ_CP010961.1 Protein Homology CDS 697332 697736 . + 0 ID=cds669;Parent=gene684;Dbxref=Genbank:WP_010929801.1;Name=WP_010929801.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929801.1;transl_table=11 NZ_CP010961.1 RefSeq gene 697878 701264 . + . ID=gene685;Name=RD04_RS03430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03430;old_locus_tag=RD04_03420 NZ_CP010961.1 Protein Homology CDS 697878 701264 . + 0 ID=cds670;Parent=gene685;Dbxref=Genbank:WP_010929800.1;Name=WP_010929800.1;gbkey=CDS;product=molybdopterin oxidoreductase;protein_id=WP_010929800.1;transl_table=11 NZ_CP010961.1 RefSeq gene 701295 702758 . + . ID=gene686;Name=RD04_RS03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03435;old_locus_tag=RD04_03425 NZ_CP010961.1 Protein Homology CDS 701295 702758 . + 0 ID=cds671;Parent=gene686;Dbxref=Genbank:WP_010929799.1;Name=WP_010929799.1;gbkey=CDS;product=short-chain fatty acids transporter;protein_id=WP_010929799.1;transl_table=11 NZ_CP010961.1 RefSeq gene 702779 704395 . + . ID=gene687;Name=RD04_RS03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03440;old_locus_tag=RD04_03430 NZ_CP010961.1 Protein Homology CDS 702779 704395 . + 0 ID=cds672;Parent=gene687;Dbxref=Genbank:WP_019248869.1;Name=WP_019248869.1;gbkey=CDS;product=1-pyrroline-5-carboxylate dehydrogenase;protein_id=WP_019248869.1;transl_table=11 NZ_CP010961.1 RefSeq gene 704481 705140 . + . ID=gene688;Name=RD04_RS03445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03445;old_locus_tag=RD04_03435 NZ_CP010961.1 Protein Homology CDS 704481 705140 . + 0 ID=cds673;Parent=gene688;Dbxref=Genbank:WP_010929797.1;Name=WP_010929797.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010929797.1;transl_table=11 NZ_CP010961.1 RefSeq gene 705170 705610 . - . ID=gene689;Name=RD04_RS03450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03450;old_locus_tag=RD04_03440 NZ_CP010961.1 Protein Homology CDS 705170 705610 . - 0 ID=cds674;Parent=gene689;Dbxref=Genbank:WP_010929796.1;Name=WP_010929796.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929796.1;transl_table=11 NZ_CP010961.1 RefSeq gene 706121 706324 . + . ID=gene690;Name=RD04_RS03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03455;old_locus_tag=RD04_03445 NZ_CP010961.1 Protein Homology CDS 706121 706324 . + 0 ID=cds675;Parent=gene690;Dbxref=Genbank:WP_010929795.1;Name=WP_010929795.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_010929795.1;transl_table=11 NZ_CP010961.1 RefSeq gene 706500 707405 . + . ID=gene691;Name=RD04_RS03460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03460;old_locus_tag=RD04_03450 NZ_CP010961.1 Protein Homology CDS 706500 707405 . + 0 ID=cds676;Parent=gene691;Dbxref=Genbank:WP_010929794.1;Name=WP_010929794.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010929794.1;transl_table=11 NZ_CP010961.1 RefSeq gene 707552 708454 . + . ID=gene692;Name=RD04_RS03465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03465;old_locus_tag=RD04_03455 NZ_CP010961.1 GeneMarkS+ CDS 707552 708454 . + 0 ID=cds677;Parent=gene692;Dbxref=Genbank:WP_023994703.1;Name=WP_023994703.1;gbkey=CDS;product=transposase;protein_id=WP_023994703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 708553 709503 . + . ID=gene693;Name=RD04_RS03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03470;old_locus_tag=RD04_03460 NZ_CP010961.1 Protein Homology CDS 708553 709503 . + 0 ID=cds678;Parent=gene693;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 709604 711236 . + . ID=gene694;Name=RD04_RS03475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS03475;old_locus_tag=RD04_03465;pseudo=true NZ_CP010961.1 Protein Homology CDS 709604 711236 . + 0 ID=cds679;Parent=gene694;Note=frameshifted;gbkey=CDS;product=ATP-dependent acyl-CoA ligase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 711285 712478 . - . ID=gene695;Name=RD04_RS03480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03480;old_locus_tag=RD04_03470 NZ_CP010961.1 Protein Homology CDS 711285 712478 . - 0 ID=cds680;Parent=gene695;Dbxref=Genbank:WP_003814674.1;Name=WP_003814674.1;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation;gbkey=CDS;product=acetyl-CoA acetyltransferase;protein_id=WP_003814674.1;transl_table=11 NZ_CP010961.1 RefSeq gene 712544 713572 . - . ID=gene696;Name=RD04_RS03485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03485;old_locus_tag=RD04_03475 NZ_CP010961.1 Protein Homology CDS 712544 713572 . - 0 ID=cds681;Parent=gene696;Dbxref=Genbank:WP_010929793.1;Name=WP_010929793.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_010929793.1;transl_table=11 NZ_CP010961.1 RefSeq gene 713599 714771 . - . ID=gene697;Name=RD04_RS03490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03490;old_locus_tag=RD04_03480 NZ_CP010961.1 Protein Homology CDS 713599 714771 . - 0 ID=cds682;Parent=gene697;Dbxref=Genbank:WP_019247419.1;Name=WP_019247419.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_019247419.1;transl_table=11 NZ_CP010961.1 RefSeq gene 714897 715874 . + . ID=gene698;Name=RD04_RS03495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03495;old_locus_tag=RD04_03485 NZ_CP010961.1 Protein Homology CDS 714897 715874 . + 0 ID=cds683;Parent=gene698;Dbxref=Genbank:WP_003814681.1;Name=WP_003814681.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003814681.1;transl_table=11 NZ_CP010961.1 RefSeq gene 715885 716856 . - . ID=gene699;Name=RD04_RS03500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03500;old_locus_tag=RD04_03490 NZ_CP010961.1 Protein Homology CDS 715885 716856 . - 0 ID=cds684;Parent=gene699;Dbxref=Genbank:WP_003814685.1;Name=WP_003814685.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003814685.1;transl_table=11 NZ_CP010961.1 RefSeq gene 716923 717708 . - . ID=gene700;Name=RD04_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03505;old_locus_tag=RD04_03495 NZ_CP010961.1 Protein Homology CDS 716923 717708 . - 0 ID=cds685;Parent=gene700;Dbxref=Genbank:WP_010929791.1;Name=WP_010929791.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010929791.1;transl_table=11 NZ_CP010961.1 RefSeq gene 717701 718933 . - . ID=gene701;Name=RD04_RS03510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03510;old_locus_tag=RD04_03500 NZ_CP010961.1 Protein Homology CDS 717701 718933 . - 0 ID=cds686;Parent=gene701;Dbxref=Genbank:WP_003814691.1;Name=WP_003814691.1;gbkey=CDS;product=CoA transferase;protein_id=WP_003814691.1;transl_table=11 NZ_CP010961.1 RefSeq gene 719129 719884 . - . ID=gene702;Name=RD04_RS03515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03515;old_locus_tag=RD04_03505 NZ_CP010961.1 Protein Homology CDS 719129 719884 . - 0 ID=cds687;Parent=gene702;Dbxref=Genbank:WP_003814694.1;Name=WP_003814694.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814694.1;transl_table=11 NZ_CP010961.1 RefSeq gene 719995 720513 . + . ID=gene703;Name=RD04_RS03520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03520;old_locus_tag=RD04_03510 NZ_CP010961.1 Protein Homology CDS 719995 720513 . + 0 ID=cds688;Parent=gene703;Dbxref=Genbank:WP_010929789.1;Name=WP_010929789.1;gbkey=CDS;product=methyltransferase;protein_id=WP_010929789.1;transl_table=11 NZ_CP010961.1 RefSeq gene 720510 722270 . - . ID=gene704;Name=fusA;end_range=722270,.;gbkey=Gene;gene=fusA;gene_biotype=pseudogene;locus_tag=RD04_RS03525;old_locus_tag=RD04_03515;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 720510 722270 . - 0 ID=cds689;Parent=gene704;Note=EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene%3B incomplete%3B partial in the middle of a contig%3B missing start;end_range=722270,.;gbkey=CDS;gene=fusA;partial=true;product=elongation factor G;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 722302 723702 . + . ID=gene705;Name=RD04_RS03530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03530;old_locus_tag=RD04_03520 NZ_CP010961.1 Protein Homology CDS 722302 723702 . + 0 ID=cds690;Parent=gene705;Dbxref=Genbank:WP_010929788.1;Name=WP_010929788.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010929788.1;transl_table=11 NZ_CP010961.1 RefSeq gene 723802 724146 . + . ID=gene706;Name=RD04_RS03535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03535;old_locus_tag=RD04_03525 NZ_CP010961.1 Protein Homology CDS 723802 724146 . + 0 ID=cds691;Parent=gene706;Dbxref=Genbank:WP_003820700.1;Name=WP_003820700.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820700.1;transl_table=11 NZ_CP010961.1 RefSeq gene 724235 724705 . + . ID=gene707;Name=RD04_RS03540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03540;old_locus_tag=RD04_03530 NZ_CP010961.1 Protein Homology CDS 724235 724705 . + 0 ID=cds692;Parent=gene707;Dbxref=Genbank:WP_003814701.1;Name=WP_003814701.1;gbkey=CDS;product=universal stress protein;protein_id=WP_003814701.1;transl_table=11 NZ_CP010961.1 RefSeq gene 725116 725514 . + . ID=gene708;Name=RD04_RS03545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03545;old_locus_tag=RD04_03535 NZ_CP010961.1 Protein Homology CDS 725116 725514 . + 0 ID=cds693;Parent=gene708;Dbxref=Genbank:WP_019247421.1;Name=WP_019247421.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247421.1;transl_table=11 NZ_CP010961.1 RefSeq gene 725646 726548 . - . ID=gene709;Name=RD04_RS03550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03550;old_locus_tag=RD04_03540 NZ_CP010961.1 GeneMarkS+ CDS 725646 726548 . - 0 ID=cds694;Parent=gene709;Dbxref=Genbank:WP_023994703.1;Name=WP_023994703.1;gbkey=CDS;product=transposase;protein_id=WP_023994703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 726678 729032 . + . ID=gene710;Name=RD04_RS03555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS03555;old_locus_tag=RD04_03545;partial=true;pseudo=true;start_range=.,726678 NZ_CP010961.1 Protein Homology CDS 726678 729032 . + 0 ID=cds695;Parent=gene710;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=multidrug transporter AcrB;pseudo=true;start_range=.,726678;transl_table=11 NZ_CP010961.1 RefSeq gene 729041 729775 . + . ID=gene711;Name=RD04_RS03560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03560;old_locus_tag=RD04_03550 NZ_CP010961.1 Protein Homology CDS 729041 729775 . + 0 ID=cds696;Parent=gene711;Dbxref=Genbank:WP_003814730.1;Name=WP_003814730.1;gbkey=CDS;product=DNA polymerase III subunit epsilon;protein_id=WP_003814730.1;transl_table=11 NZ_CP010961.1 RefSeq gene 729835 729909 . + . ID=gene712;Name=RD04_RS03565;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS03565;old_locus_tag=RD04_03555 NZ_CP010961.1 tRNAscan-SE tRNA 729835 729909 . + . ID=rna15;Parent=gene712;anticodon=(pos:729867..729869);gbkey=tRNA;product=tRNA-Val NZ_CP010961.1 tRNAscan-SE exon 729835 729909 . + . ID=id17;Parent=rna15;anticodon=(pos:729867..729869);gbkey=tRNA;product=tRNA-Val NZ_CP010961.1 RefSeq gene 730185 730364 . + . ID=gene713;Name=RD04_RS03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03570;old_locus_tag=RD04_03560 NZ_CP010961.1 Protein Homology CDS 730185 730364 . + 0 ID=cds697;Parent=gene713;Dbxref=Genbank:WP_003814728.1;Name=WP_003814728.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814728.1;transl_table=11 NZ_CP010961.1 RefSeq gene 730555 731868 . + . ID=gene714;Name=RD04_RS03575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03575;old_locus_tag=RD04_03565 NZ_CP010961.1 Protein Homology CDS 730555 731868 . + 0 ID=cds698;Parent=gene714;Dbxref=Genbank:WP_003814726.1;Name=WP_003814726.1;gbkey=CDS;product=short-chain fatty acids transporter;protein_id=WP_003814726.1;transl_table=11 NZ_CP010961.1 RefSeq gene 731884 733395 . - . ID=gene715;Name=RD04_RS03580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03580;old_locus_tag=RD04_03570 NZ_CP010961.1 Protein Homology CDS 731884 733395 . - 0 ID=cds699;Parent=gene715;Dbxref=Genbank:WP_010929786.1;Name=WP_010929786.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929786.1;transl_table=11 NZ_CP010961.1 RefSeq gene 733392 734597 . - . ID=gene716;Name=RD04_RS03585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03585;old_locus_tag=RD04_03575 NZ_CP010961.1 Protein Homology CDS 733392 734597 . - 0 ID=cds700;Parent=gene716;Dbxref=Genbank:WP_010929785.1;Name=WP_010929785.1;gbkey=CDS;product=sodium/glutamate symporter;protein_id=WP_010929785.1;transl_table=11 NZ_CP010961.1 RefSeq gene 734793 735770 . - . ID=gene717;Name=RD04_RS03590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03590;old_locus_tag=RD04_03580 NZ_CP010961.1 Protein Homology CDS 734793 735770 . - 0 ID=cds701;Parent=gene717;Dbxref=Genbank:WP_022997984.1;Name=WP_022997984.1;gbkey=CDS;product=integrase;protein_id=WP_022997984.1;transl_table=11 NZ_CP010961.1 RefSeq gene 735863 736357 . - . ID=gene718;Name=RD04_RS03595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03595;old_locus_tag=RD04_03585 NZ_CP010961.1 Protein Homology CDS 735863 736357 . - 0 ID=cds702;Parent=gene718;Dbxref=Genbank:WP_033446199.1;Name=WP_033446199.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_033446199.1;transl_table=11 NZ_CP010961.1 RefSeq gene 736487 737545 . + . ID=gene719;Name=RD04_RS03600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03600;old_locus_tag=RD04_03590 NZ_CP010961.1 Protein Homology CDS 736487 737545 . + 0 ID=cds703;Parent=gene719;Dbxref=Genbank:WP_003814720.1;Name=WP_003814720.1;gbkey=CDS;product=glycosyl transferase family 2;protein_id=WP_003814720.1;transl_table=11 NZ_CP010961.1 RefSeq gene 737542 739161 . + . ID=gene720;Name=RD04_RS03605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03605;old_locus_tag=RD04_03595 NZ_CP010961.1 Protein Homology CDS 737542 739161 . + 0 ID=cds704;Parent=gene720;Dbxref=Genbank:WP_010927086.1;Name=WP_010927086.1;gbkey=CDS;product=membrane protein;protein_id=WP_010927086.1;transl_table=11 NZ_CP010961.1 RefSeq gene 739349 740452 . + . ID=gene721;Name=RD04_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03610;old_locus_tag=RD04_03600 NZ_CP010961.1 Protein Homology CDS 739349 740452 . + 0 ID=cds705;Parent=gene721;Dbxref=Genbank:WP_010929784.1;Name=WP_010929784.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929784.1;transl_table=11 NZ_CP010961.1 RefSeq gene 740449 740904 . + . ID=gene722;Name=RD04_RS03615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03615;old_locus_tag=RD04_03605 NZ_CP010961.1 Protein Homology CDS 740449 740904 . + 0 ID=cds706;Parent=gene722;Dbxref=Genbank:WP_010929783.1;Name=WP_010929783.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929783.1;transl_table=11 NZ_CP010961.1 RefSeq gene 740910 741833 . - . ID=gene723;Name=RD04_RS03620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03620;old_locus_tag=RD04_03610 NZ_CP010961.1 Protein Homology CDS 740910 741833 . - 0 ID=cds707;Parent=gene723;Dbxref=Genbank:WP_003814709.1;Name=WP_003814709.1;gbkey=CDS;product=peptidase;protein_id=WP_003814709.1;transl_table=11 NZ_CP010961.1 RefSeq gene 741923 742582 . - . ID=gene724;Name=RD04_RS03625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03625;old_locus_tag=RD04_03615 NZ_CP010961.1 Protein Homology CDS 741923 742582 . - 0 ID=cds708;Parent=gene724;Dbxref=Genbank:WP_010929782.1;Name=WP_010929782.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929782.1;transl_table=11 NZ_CP010961.1 RefSeq gene 742579 743493 . - . ID=gene725;Name=RD04_RS03630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03630;old_locus_tag=RD04_03620 NZ_CP010961.1 Protein Homology CDS 742579 743493 . - 0 ID=cds709;Parent=gene725;Dbxref=Genbank:WP_047122777.1;Name=WP_047122777.1;gbkey=CDS;product=transporter;protein_id=WP_047122777.1;transl_table=11 NZ_CP010961.1 RefSeq gene 743630 744532 . + . ID=gene726;Name=RD04_RS03635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03635;old_locus_tag=RD04_03625 NZ_CP010961.1 GeneMarkS+ CDS 743630 744532 . + 0 ID=cds710;Parent=gene726;Dbxref=Genbank:WP_023994703.1;Name=WP_023994703.1;gbkey=CDS;product=transposase;protein_id=WP_023994703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 744608 745588 . + . ID=gene727;Name=RD04_RS03640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03640;old_locus_tag=RD04_03630 NZ_CP010961.1 Protein Homology CDS 744608 745588 . + 0 ID=cds711;Parent=gene727;Dbxref=Genbank:WP_014486055.1;Name=WP_014486055.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014486055.1;transl_table=11 NZ_CP010961.1 RefSeq gene 746049 746648 . + . ID=gene728;Name=RD04_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03645;old_locus_tag=RD04_03635 NZ_CP010961.1 Protein Homology CDS 746049 746648 . + 0 ID=cds712;Parent=gene728;Dbxref=Genbank:WP_003807865.1;Name=WP_003807865.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003807865.1;transl_table=11 NZ_CP010961.1 RefSeq gene 746717 747709 . + . ID=gene729;Name=RD04_RS03650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03650;old_locus_tag=RD04_03640 NZ_CP010961.1 Protein Homology CDS 746717 747709 . + 0 ID=cds713;Parent=gene729;Dbxref=Genbank:WP_003807867.1;Name=WP_003807867.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003807867.1;transl_table=11 NZ_CP010961.1 RefSeq gene 747759 749348 . + . ID=gene730;Name=RD04_RS03655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03655;old_locus_tag=RD04_03645 NZ_CP010961.1 Protein Homology CDS 747759 749348 . + 0 ID=cds714;Parent=gene730;Dbxref=Genbank:WP_014486054.1;Name=WP_014486054.1;gbkey=CDS;product=sulfurtransferase;protein_id=WP_014486054.1;transl_table=11 NZ_CP010961.1 RefSeq gene 749389 750285 . + . ID=gene731;Name=RD04_RS03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03660;old_locus_tag=RD04_03650 NZ_CP010961.1 Protein Homology CDS 749389 750285 . + 0 ID=cds715;Parent=gene731;Dbxref=Genbank:WP_014486053.1;Name=WP_014486053.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_014486053.1;transl_table=11 NZ_CP010961.1 RefSeq gene 750282 751988 . + . ID=gene732;Name=RD04_RS03665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03665;old_locus_tag=RD04_03655 NZ_CP010961.1 Protein Homology CDS 750282 751988 . + 0 ID=cds716;Parent=gene732;Dbxref=Genbank:WP_014486052.1;Name=WP_014486052.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014486052.1;transl_table=11 NZ_CP010961.1 RefSeq gene 752156 753334 . + . ID=gene733;Name=RD04_RS03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03670;old_locus_tag=RD04_03660 NZ_CP010961.1 Protein Homology CDS 752156 753334 . + 0 ID=cds717;Parent=gene733;Dbxref=Genbank:WP_019247259.1;Name=WP_019247259.1;gbkey=CDS;product=CoA transferase;protein_id=WP_019247259.1;transl_table=11 NZ_CP010961.1 RefSeq gene 753331 754101 . + . ID=gene734;Name=RD04_RS03675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03675;old_locus_tag=RD04_03665 NZ_CP010961.1 Protein Homology CDS 753331 754101 . + 0 ID=cds718;Parent=gene734;Dbxref=Genbank:WP_014486051.1;Name=WP_014486051.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_014486051.1;transl_table=11 NZ_CP010961.1 RefSeq gene 754261 754815 . + . ID=gene735;Name=RD04_RS03680;end_range=754815,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS03680;old_locus_tag=RD04_03670;partial=true;pseudo=true;start_range=.,754261 NZ_CP010961.1 Protein Homology CDS 754261 754815 . + 0 ID=cds719;Parent=gene735;Note=incomplete%3B partial in the middle of a contig%3B missing start and stop;end_range=754815,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,754261;transl_table=11 NZ_CP010961.1 RefSeq gene 754778 755761 . - . ID=gene736;Name=RD04_RS03685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03685;old_locus_tag=RD04_03675 NZ_CP010961.1 Protein Homology CDS 754778 755761 . - 0 ID=cds720;Parent=gene736;Dbxref=Genbank:WP_014486049.1;Name=WP_014486049.1;gbkey=CDS;product=integrase;protein_id=WP_014486049.1;transl_table=11 NZ_CP010961.1 RefSeq gene 755860 756813 . - . ID=gene737;Name=RD04_RS03690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03690;old_locus_tag=RD04_03680 NZ_CP010961.1 Protein Homology CDS 755860 756813 . - 0 ID=cds721;Parent=gene737;Dbxref=Genbank:WP_014486048.1;Name=WP_014486048.1;Note=catalyzes the transfer of electrons from NADPH to thioredoxin%3B FAD/NAD(P) binding;gbkey=CDS;product=thioredoxin-disulfide reductase;protein_id=WP_014486048.1;transl_table=11 NZ_CP010961.1 RefSeq gene 757118 757927 . + . ID=gene738;Name=RD04_RS03695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03695;old_locus_tag=RD04_03685 NZ_CP010961.1 Protein Homology CDS 757118 757927 . + 0 ID=cds722;Parent=gene738;Dbxref=Genbank:WP_010929483.1;Name=WP_010929483.1;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_010929483.1;transl_table=11 NZ_CP010961.1 RefSeq gene 758061 759380 . + . ID=gene739;Name=RD04_RS03700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03700;old_locus_tag=RD04_03690 NZ_CP010961.1 GeneMarkS+ CDS 758061 759380 . + 0 ID=cds723;Parent=gene739;Dbxref=Genbank:WP_050543468.1;Name=WP_050543468.1;gbkey=CDS;product=rhodanese-like domain-containing protein;protein_id=WP_050543468.1;transl_table=11 NZ_CP010961.1 RefSeq gene 759269 759661 . + . ID=gene740;Name=RD04_RS03705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03705;old_locus_tag=RD04_03695 NZ_CP010961.1 Protein Homology CDS 759269 759661 . + 0 ID=cds724;Parent=gene740;Dbxref=Genbank:WP_019247940.1;Name=WP_019247940.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247940.1;transl_table=11 NZ_CP010961.1 RefSeq gene 759658 760302 . + . ID=gene741;Name=RD04_RS03710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03710;old_locus_tag=RD04_03700 NZ_CP010961.1 Protein Homology CDS 759658 760302 . + 0 ID=cds725;Parent=gene741;Dbxref=Genbank:WP_014486047.1;Name=WP_014486047.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014486047.1;transl_table=11 NZ_CP010961.1 RefSeq gene 760299 761519 . + . ID=gene742;Name=RD04_RS03715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03715;old_locus_tag=RD04_03705 NZ_CP010961.1 Protein Homology CDS 760299 761519 . + 0 ID=cds726;Parent=gene742;Dbxref=Genbank:WP_014486046.1;Name=WP_014486046.1;gbkey=CDS;product=CoA transferase;protein_id=WP_014486046.1;transl_table=11 NZ_CP010961.1 RefSeq gene 761542 762537 . + . ID=gene743;Name=RD04_RS03720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03720;old_locus_tag=RD04_03710 NZ_CP010961.1 Protein Homology CDS 761542 762537 . + 0 ID=cds727;Parent=gene743;Dbxref=Genbank:WP_014486045.1;Name=WP_014486045.1;gbkey=CDS;product=membrane protein;protein_id=WP_014486045.1;transl_table=11 NZ_CP010961.1 RefSeq gene 762610 763815 . - . ID=gene744;Name=RD04_RS03725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03725;old_locus_tag=RD04_03715 NZ_CP010961.1 Protein Homology CDS 762610 763815 . - 0 ID=cds728;Parent=gene744;Dbxref=Genbank:WP_003815840.1;Name=WP_003815840.1;gbkey=CDS;product=CoA transferase;protein_id=WP_003815840.1;transl_table=11 NZ_CP010961.1 RefSeq gene 763812 764060 . - . ID=gene745;Name=RD04_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03730;old_locus_tag=RD04_03720 NZ_CP010961.1 Protein Homology CDS 763812 764060 . - 0 ID=cds729;Parent=gene745;Dbxref=Genbank:WP_003815842.1;Name=WP_003815842.1;gbkey=CDS;product=NrdH-redoxin;protein_id=WP_003815842.1;transl_table=11 NZ_CP010961.1 RefSeq gene 764057 764974 . - . ID=gene746;Name=RD04_RS03735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03735;old_locus_tag=RD04_03725 NZ_CP010961.1 Protein Homology CDS 764057 764974 . - 0 ID=cds730;Parent=gene746;Dbxref=Genbank:WP_010927231.1;Name=WP_010927231.1;gbkey=CDS;product=reductase;protein_id=WP_010927231.1;transl_table=11 NZ_CP010961.1 RefSeq gene 765111 766061 . + . ID=gene747;Name=RD04_RS03740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03740;old_locus_tag=RD04_03730 NZ_CP010961.1 Protein Homology CDS 765111 766061 . + 0 ID=cds731;Parent=gene747;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 766058 766630 . - . ID=gene748;Name=RD04_RS03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03745;old_locus_tag=RD04_03735 NZ_CP010961.1 Protein Homology CDS 766058 766630 . - 0 ID=cds732;Parent=gene748;Dbxref=Genbank:WP_010929781.1;Name=WP_010929781.1;gbkey=CDS;product=methylated-DNA--protein-cysteine methyltransferase;protein_id=WP_010929781.1;transl_table=11 NZ_CP010961.1 RefSeq gene 766627 767565 . - . ID=gene749;Name=RD04_RS03750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03750;old_locus_tag=RD04_03740 NZ_CP010961.1 Protein Homology CDS 766627 767565 . - 0 ID=cds733;Parent=gene749;Dbxref=Genbank:WP_010929780.1;Name=WP_010929780.1;gbkey=CDS;product=rRNA (cytidine-2'-O-)-methyltransferase;protein_id=WP_010929780.1;transl_table=11 NZ_CP010961.1 RefSeq gene 767867 768166 . + . ID=gene750;Name=RD04_RS03755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03755;old_locus_tag=RD04_03745 NZ_CP010961.1 Protein Homology CDS 767867 768166 . + 0 ID=cds734;Parent=gene750;Dbxref=Genbank:WP_019248384.1;Name=WP_019248384.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248384.1;transl_table=11 NZ_CP010961.1 RefSeq gene 768175 768768 . + . ID=gene751;Name=RD04_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03760;old_locus_tag=RD04_03750 NZ_CP010961.1 Protein Homology CDS 768175 768768 . + 0 ID=cds735;Parent=gene751;Dbxref=Genbank:WP_033446211.1;Name=WP_033446211.1;gbkey=CDS;product=phosphoheptose isomerase;protein_id=WP_033446211.1;transl_table=11 NZ_CP010961.1 RefSeq gene 768765 769508 . + . ID=gene752;Name=RD04_RS03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03765;old_locus_tag=RD04_03755 NZ_CP010961.1 Protein Homology CDS 768765 769508 . + 0 ID=cds736;Parent=gene752;Dbxref=Genbank:WP_003815190.1;Name=WP_003815190.1;gbkey=CDS;product=phospholipid-binding protein;protein_id=WP_003815190.1;transl_table=11 NZ_CP010961.1 RefSeq gene 769505 769996 . + . ID=gene753;Name=RD04_RS03770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03770;old_locus_tag=RD04_03760 NZ_CP010961.1 Protein Homology CDS 769505 769996 . + 0 ID=cds737;Parent=gene753;Dbxref=Genbank:WP_003815191.1;Name=WP_003815191.1;gbkey=CDS;product=thioredoxin;protein_id=WP_003815191.1;transl_table=11 NZ_CP010961.1 RefSeq gene 770137 770925 . - . ID=gene754;Name=RD04_RS03775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03775;old_locus_tag=RD04_03765 NZ_CP010961.1 Protein Homology CDS 770137 770925 . - 0 ID=cds738;Parent=gene754;Dbxref=Genbank:WP_010929779.1;Name=WP_010929779.1;gbkey=CDS;product=methionine ABC transporter substrate-binding protein;protein_id=WP_010929779.1;transl_table=11 NZ_CP010961.1 RefSeq gene 771187 772089 . + . ID=gene755;Name=RD04_RS03780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03780;old_locus_tag=RD04_03770 NZ_CP010961.1 Protein Homology CDS 771187 772089 . + 0 ID=cds739;Parent=gene755;Dbxref=Genbank:WP_010929778.1;Name=WP_010929778.1;gbkey=CDS;product=acetylglutamate kinase;protein_id=WP_010929778.1;transl_table=11 NZ_CP010961.1 RefSeq gene 772089 772835 . + . ID=gene756;Name=RD04_RS03785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03785;old_locus_tag=RD04_03775 NZ_CP010961.1 Protein Homology CDS 772089 772835 . + 0 ID=cds740;Parent=gene756;Dbxref=Genbank:WP_010929777.1;Name=WP_010929777.1;gbkey=CDS;product=pyrimidine 5'-nucleotidase;protein_id=WP_010929777.1;transl_table=11 NZ_CP010961.1 RefSeq gene 772885 773460 . + . ID=gene757;Name=RD04_RS03790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03790;old_locus_tag=RD04_03780 NZ_CP010961.1 Protein Homology CDS 772885 773460 . + 0 ID=cds741;Parent=gene757;Dbxref=Genbank:WP_010927138.1;Name=WP_010927138.1;gbkey=CDS;product=nucleoid occlusion factor SlmA;protein_id=WP_010927138.1;transl_table=11 NZ_CP010961.1 RefSeq gene 773673 775166 . + . ID=gene758;Name=RD04_RS03795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03795;old_locus_tag=RD04_03785 NZ_CP010961.1 Protein Homology CDS 773673 775166 . + 0 ID=cds742;Parent=gene758;Dbxref=Genbank:WP_010929776.1;Name=WP_010929776.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929776.1;transl_table=11 NZ_CP010961.1 RefSeq gene 775177 776232 . + . ID=gene759;Name=RD04_RS03800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03800;old_locus_tag=RD04_03790 NZ_CP010961.1 Protein Homology CDS 775177 776232 . + 0 ID=cds743;Parent=gene759;Dbxref=Genbank:WP_010929775.1;Name=WP_010929775.1;gbkey=CDS;product=lactate dehydrogenase;protein_id=WP_010929775.1;transl_table=11 NZ_CP010961.1 RefSeq gene 776258 777394 . - . ID=gene760;Name=RD04_RS03805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03805;old_locus_tag=RD04_03795 NZ_CP010961.1 Protein Homology CDS 776258 777394 . - 0 ID=cds744;Parent=gene760;Dbxref=Genbank:WP_003815198.1;Name=WP_003815198.1;gbkey=CDS;product=rod shape-determining protein RodA;protein_id=WP_003815198.1;transl_table=11 NZ_CP010961.1 RefSeq gene 777391 779343 . - . ID=gene761;Name=RD04_RS03810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03810;old_locus_tag=RD04_03800 NZ_CP010961.1 Protein Homology CDS 777391 779343 . - 0 ID=cds745;Parent=gene761;Dbxref=Genbank:WP_003815201.1;Name=WP_003815201.1;gbkey=CDS;product=penicillin-binding protein 2;protein_id=WP_003815201.1;transl_table=11 NZ_CP010961.1 RefSeq gene 779357 779920 . - . ID=gene762;Name=RD04_RS03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03815;old_locus_tag=RD04_03805 NZ_CP010961.1 Protein Homology CDS 779357 779920 . - 0 ID=cds746;Parent=gene762;Dbxref=Genbank:WP_003815202.1;Name=WP_003815202.1;gbkey=CDS;product=rod shape-determining protein MreD;protein_id=WP_003815202.1;transl_table=11 NZ_CP010961.1 RefSeq gene 779907 780791 . - . ID=gene763;Name=RD04_RS03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03820;old_locus_tag=RD04_03810 NZ_CP010961.1 Protein Homology CDS 779907 780791 . - 0 ID=cds747;Parent=gene763;Dbxref=Genbank:WP_010929773.1;Name=WP_010929773.1;gbkey=CDS;product=rod shape-determining protein MreC;protein_id=WP_010929773.1;transl_table=11 NZ_CP010961.1 RefSeq gene 780880 781923 . - . ID=gene764;Name=RD04_RS03825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03825;old_locus_tag=RD04_03815 NZ_CP010961.1 Protein Homology CDS 780880 781923 . - 0 ID=cds748;Parent=gene764;Dbxref=Genbank:WP_003815204.1;Name=WP_003815204.1;gbkey=CDS;product=rod shape-determining protein;protein_id=WP_003815204.1;transl_table=11 NZ_CP010961.1 RefSeq gene 782154 782462 . + . ID=gene765;Name=RD04_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03830;old_locus_tag=RD04_03820 NZ_CP010961.1 Protein Homology CDS 782154 782462 . + 0 ID=cds749;Parent=gene765;Dbxref=Genbank:WP_010929772.1;Name=WP_010929772.1;gbkey=CDS;product=aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C;protein_id=WP_010929772.1;transl_table=11 NZ_CP010961.1 RefSeq gene 782465 784003 . + . ID=gene766;Name=RD04_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03835;old_locus_tag=RD04_03825 NZ_CP010961.1 Protein Homology CDS 782465 784003 . + 0 ID=cds750;Parent=gene766;Dbxref=Genbank:WP_010929771.1;Name=WP_010929771.1;gbkey=CDS;product=glutamyl-tRNA(Gln) amidotransferase subunit A;protein_id=WP_010929771.1;transl_table=11 NZ_CP010961.1 RefSeq gene 784006 785460 . + . ID=gene767;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;locus_tag=RD04_RS03840;old_locus_tag=RD04_03830 NZ_CP010961.1 Protein Homology CDS 784006 785460 . + 0 ID=cds751;Parent=gene767;Dbxref=Genbank:WP_010929770.1;Name=WP_010929770.1;Note=allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases%3B reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA;gbkey=CDS;gene=gatB;product=aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B;protein_id=WP_010929770.1;transl_table=11 NZ_CP010961.1 RefSeq gene 785574 786248 . - . ID=gene768;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=RD04_RS03845;old_locus_tag=RD04_03835 NZ_CP010961.1 Protein Homology CDS 785574 786248 . - 0 ID=cds752;Parent=gene768;Dbxref=Genbank:WP_010929769.1;Name=WP_010929769.1;Note=involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate;gbkey=CDS;gene=pyrE;product=orotate phosphoribosyltransferase;protein_id=WP_010929769.1;transl_table=11 NZ_CP010961.1 RefSeq gene 786386 787174 . + . ID=gene769;Name=RD04_RS03850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03850;old_locus_tag=RD04_03840 NZ_CP010961.1 Protein Homology CDS 786386 787174 . + 0 ID=cds753;Parent=gene769;Dbxref=Genbank:WP_010929768.1;Name=WP_010929768.1;gbkey=CDS;product=endonuclease;protein_id=WP_010929768.1;transl_table=11 NZ_CP010961.1 RefSeq gene 787597 788940 . + . ID=gene770;Name=RD04_RS03855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03855;old_locus_tag=RD04_03845 NZ_CP010961.1 Protein Homology CDS 787597 788940 . + 0 ID=cds754;Parent=gene770;Dbxref=Genbank:WP_010929767.1;Name=WP_010929767.1;Note=converts 2-oxoglutarate to glutamate%3B in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction%3B uses NADPH%3B forms a homohexamer;gbkey=CDS;product=glutamate dehydrogenase;protein_id=WP_010929767.1;transl_table=11 NZ_CP010961.1 RefSeq gene 788977 789615 . - . ID=gene771;Name=RD04_RS03860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03860;old_locus_tag=RD04_03850 NZ_CP010961.1 Protein Homology CDS 788977 789615 . - 0 ID=cds755;Parent=gene771;Dbxref=Genbank:WP_010929766.1;Name=WP_010929766.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929766.1;transl_table=11 NZ_CP010961.1 RefSeq gene 789803 790567 . + . ID=gene772;Name=RD04_RS03865;end_range=790567,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS03865;old_locus_tag=RD04_03855;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 789803 790567 . + 0 ID=cds756;Parent=gene772;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=790567,.;gbkey=CDS;partial=true;product=universal stress protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 790712 791614 . + . ID=gene773;Name=RD04_RS03870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03870;old_locus_tag=RD04_03860 NZ_CP010961.1 GeneMarkS+ CDS 790712 791614 . + 0 ID=cds757;Parent=gene773;Dbxref=Genbank:WP_041337068.1;Name=WP_041337068.1;gbkey=CDS;product=integrase;protein_id=WP_041337068.1;transl_table=11 NZ_CP010961.1 RefSeq gene 791611 792585 . - . ID=gene774;Name=RD04_RS03875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03875;old_locus_tag=RD04_03865 NZ_CP010961.1 Protein Homology CDS 791611 792585 . - 0 ID=cds758;Parent=gene774;Dbxref=Genbank:WP_010929764.1;Name=WP_010929764.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929764.1;transl_table=11 NZ_CP010961.1 RefSeq gene 792792 793532 . - . ID=gene775;Name=RD04_RS03880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03880;old_locus_tag=RD04_03870 NZ_CP010961.1 Protein Homology CDS 792792 793532 . - 0 ID=cds759;Parent=gene775;Dbxref=Genbank:WP_010929763.1;Name=WP_010929763.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010929763.1;transl_table=11 NZ_CP010961.1 RefSeq gene 793747 794757 . - . ID=gene776;Name=RD04_RS03885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03885;old_locus_tag=RD04_03875 NZ_CP010961.1 Protein Homology CDS 793747 794757 . - 0 ID=cds760;Parent=gene776;Dbxref=Genbank:WP_003817846.1;Name=WP_003817846.1;gbkey=CDS;product=CDP-6-deoxy-delta-3%2C4-glucoseen reductase;protein_id=WP_003817846.1;transl_table=11 NZ_CP010961.1 RefSeq gene 794776 795255 . - . ID=gene777;Name=RD04_RS03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03890;old_locus_tag=RD04_03880 NZ_CP010961.1 Protein Homology CDS 794776 795255 . - 0 ID=cds761;Parent=gene777;Dbxref=Genbank:WP_010929762.1;Name=WP_010929762.1;gbkey=CDS;product=CDP-alcohol phosphatidyltransferase;protein_id=WP_010929762.1;transl_table=11 NZ_CP010961.1 RefSeq gene 795280 796740 . - . ID=gene778;Name=RD04_RS03895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03895;old_locus_tag=RD04_03885 NZ_CP010961.1 Protein Homology CDS 795280 796740 . - 0 ID=cds762;Parent=gene778;Dbxref=Genbank:WP_010929761.1;Name=WP_010929761.1;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_010929761.1;transl_table=11 NZ_CP010961.1 RefSeq gene 796785 797516 . - . ID=gene779;Name=RD04_RS03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03900;old_locus_tag=RD04_03890 NZ_CP010961.1 Protein Homology CDS 796785 797516 . - 0 ID=cds763;Parent=gene779;Dbxref=Genbank:WP_003815418.1;Name=WP_003815418.1;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_003815418.1;transl_table=11 NZ_CP010961.1 RefSeq gene 797636 799144 . - . ID=gene780;Name=RD04_RS03905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03905;old_locus_tag=RD04_03895 NZ_CP010961.1 Protein Homology CDS 797636 799144 . - 0 ID=cds764;Parent=gene780;Dbxref=Genbank:WP_010929760.1;Name=WP_010929760.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929760.1;transl_table=11 NZ_CP010961.1 RefSeq gene 799375 800118 . + . ID=gene781;Name=RD04_RS03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03910;old_locus_tag=RD04_03900 NZ_CP010961.1 Protein Homology CDS 799375 800118 . + 0 ID=cds765;Parent=gene781;Dbxref=Genbank:WP_003815420.1;Name=WP_003815420.1;gbkey=CDS;product=membrane protein;protein_id=WP_003815420.1;transl_table=11 NZ_CP010961.1 RefSeq gene 800217 800939 . + . ID=gene782;Name=RD04_RS03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03915;old_locus_tag=RD04_03905 NZ_CP010961.1 Protein Homology CDS 800217 800939 . + 0 ID=cds766;Parent=gene782;Dbxref=Genbank:WP_010929759.1;Name=WP_010929759.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010929759.1;transl_table=11 NZ_CP010961.1 RefSeq gene 801051 802001 . + . ID=gene783;Name=RD04_RS03920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03920;old_locus_tag=RD04_03910 NZ_CP010961.1 Protein Homology CDS 801051 802001 . + 0 ID=cds767;Parent=gene783;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 801998 802930 . - . ID=gene784;Name=RD04_RS03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03925;old_locus_tag=RD04_03915 NZ_CP010961.1 Protein Homology CDS 801998 802930 . - 0 ID=cds768;Parent=gene784;Dbxref=Genbank:WP_010929758.1;Name=WP_010929758.1;gbkey=CDS;product=ornithine cyclodeaminase;protein_id=WP_010929758.1;transl_table=11 NZ_CP010961.1 RefSeq gene 802941 803246 . - . ID=gene785;Name=RD04_RS03930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03930;old_locus_tag=RD04_03920 NZ_CP010961.1 Protein Homology CDS 802941 803246 . - 0 ID=cds769;Parent=gene785;Dbxref=Genbank:WP_003815425.1;Name=WP_003815425.1;gbkey=CDS;product=ferredoxin;protein_id=WP_003815425.1;transl_table=11 NZ_CP010961.1 RefSeq gene 803265 803564 . - . ID=gene786;Name=RD04_RS03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03935;old_locus_tag=RD04_03925 NZ_CP010961.1 Protein Homology CDS 803265 803564 . - 0 ID=cds770;Parent=gene786;Dbxref=Genbank:WP_004567880.1;Name=WP_004567880.1;gbkey=CDS;product=ferredoxin;protein_id=WP_004567880.1;transl_table=11 NZ_CP010961.1 RefSeq gene 803566 803883 . - . ID=gene787;Name=RD04_RS03940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03940;old_locus_tag=RD04_03930 NZ_CP010961.1 Protein Homology CDS 803566 803883 . - 0 ID=cds771;Parent=gene787;Dbxref=Genbank:WP_003815429.1;Name=WP_003815429.1;gbkey=CDS;product=ferredoxin;protein_id=WP_003815429.1;transl_table=11 NZ_CP010961.1 RefSeq gene 804197 804388 . + . ID=gene788;Name=RD04_RS03945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03945;old_locus_tag=RD04_03935 NZ_CP010961.1 Protein Homology CDS 804197 804388 . + 0 ID=cds772;Parent=gene788;Dbxref=Genbank:WP_023852637.1;Name=WP_023852637.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023852637.1;transl_table=11 NZ_CP010961.1 RefSeq gene 804562 805071 . + . ID=gene789;Name=RD04_RS03950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03950;old_locus_tag=RD04_03940 NZ_CP010961.1 Protein Homology CDS 804562 805071 . + 0 ID=cds773;Parent=gene789;Dbxref=Genbank:WP_003815434.1;Name=WP_003815434.1;gbkey=CDS;product=RNA polymerase sigma factor;protein_id=WP_003815434.1;transl_table=11 NZ_CP010961.1 RefSeq gene 805050 806024 . + . ID=gene790;Name=RD04_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03955;old_locus_tag=RD04_03945 NZ_CP010961.1 Protein Homology CDS 805050 806024 . + 0 ID=cds774;Parent=gene790;Dbxref=Genbank:WP_019247195.1;Name=WP_019247195.1;gbkey=CDS;product=iron dicitrate transporter FecR;protein_id=WP_019247195.1;transl_table=11 NZ_CP010961.1 RefSeq gene 806157 808769 . + . ID=gene791;Name=RD04_RS03960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03960;old_locus_tag=RD04_03950 NZ_CP010961.1 Protein Homology CDS 806157 808769 . + 0 ID=cds775;Parent=gene791;Dbxref=Genbank:WP_029443809.1;Name=WP_029443809.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_029443809.1;transl_table=11 NZ_CP010961.1 RefSeq gene 808805 809851 . + . ID=gene792;Name=RD04_RS03965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03965;old_locus_tag=RD04_03955 NZ_CP010961.1 Protein Homology CDS 808805 809851 . + 0 ID=cds776;Parent=gene792;Dbxref=Genbank:WP_010929754.1;Name=WP_010929754.1;gbkey=CDS;product=hemin transporter;protein_id=WP_010929754.1;transl_table=11 NZ_CP010961.1 RefSeq gene 809860 810717 . + . ID=gene793;Name=RD04_RS03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03970;old_locus_tag=RD04_03960 NZ_CP010961.1 Protein Homology CDS 809860 810717 . + 0 ID=cds777;Parent=gene793;Dbxref=Genbank:WP_023852621.1;Name=WP_023852621.1;gbkey=CDS;product=hemin-binding periplasmic protein HmuT;protein_id=WP_023852621.1;transl_table=11 NZ_CP010961.1 RefSeq gene 810761 811705 . + . ID=gene794;Name=RD04_RS03975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03975;old_locus_tag=RD04_03965 NZ_CP010961.1 Protein Homology CDS 810761 811705 . + 0 ID=cds778;Parent=gene794;Dbxref=Genbank:WP_003817862.1;Name=WP_003817862.1;gbkey=CDS;product=hemin permease;protein_id=WP_003817862.1;transl_table=11 NZ_CP010961.1 RefSeq gene 811720 812508 . + . ID=gene795;Name=RD04_RS03980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03980;old_locus_tag=RD04_03970 NZ_CP010961.1 Protein Homology CDS 811720 812508 . + 0 ID=cds779;Parent=gene795;Dbxref=Genbank:WP_010929751.1;Name=WP_010929751.1;gbkey=CDS;product=hemin import ATP-binding protein HmuV;protein_id=WP_010929751.1;transl_table=11 NZ_CP010961.1 RefSeq gene 812512 813012 . - . ID=gene796;Name=RD04_RS03985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03985;old_locus_tag=RD04_03975 NZ_CP010961.1 Protein Homology CDS 812512 813012 . - 0 ID=cds780;Parent=gene796;Dbxref=Genbank:WP_003817864.1;Name=WP_003817864.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003817864.1;transl_table=11 NZ_CP010961.1 RefSeq gene 813157 813879 . + . ID=gene797;Name=RD04_RS03990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03990;old_locus_tag=RD04_03980 NZ_CP010961.1 Protein Homology CDS 813157 813879 . + 0 ID=cds781;Parent=gene797;Dbxref=Genbank:WP_010929750.1;Name=WP_010929750.1;gbkey=CDS;product=prolyl 4-hydroxylase;protein_id=WP_010929750.1;transl_table=11 NZ_CP010961.1 RefSeq gene 813891 814541 . + . ID=gene798;Name=RD04_RS03995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS03995;old_locus_tag=RD04_03985 NZ_CP010961.1 Protein Homology CDS 813891 814541 . + 0 ID=cds782;Parent=gene798;Dbxref=Genbank:WP_003815451.1;Name=WP_003815451.1;Note=oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions;gbkey=CDS;product=alpha-ketoglutarate-dependent dioxygenase AlkB;protein_id=WP_003815451.1;transl_table=11 NZ_CP010961.1 RefSeq gene 814562 815149 . + . ID=gene799;Name=RD04_RS04000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04000;old_locus_tag=RD04_03990 NZ_CP010961.1 Protein Homology CDS 814562 815149 . + 0 ID=cds783;Parent=gene799;Dbxref=Genbank:WP_010929749.1;Name=WP_010929749.1;gbkey=CDS;product=methylated-DNA--protein-cysteine methyltransferase;protein_id=WP_010929749.1;transl_table=11 NZ_CP010961.1 RefSeq gene 815244 816386 . + . ID=gene800;Name=RD04_RS04005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04005;old_locus_tag=RD04_03995 NZ_CP010961.1 Protein Homology CDS 815244 816386 . + 0 ID=cds784;Parent=gene800;Dbxref=Genbank:WP_010929748.1;Name=WP_010929748.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929748.1;transl_table=11 NZ_CP010961.1 RefSeq gene 816396 817226 . - . ID=gene801;Name=RD04_RS04010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04010;old_locus_tag=RD04_04000 NZ_CP010961.1 Protein Homology CDS 816396 817226 . - 0 ID=cds785;Parent=gene801;Dbxref=Genbank:WP_010929747.1;Name=WP_010929747.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 817223 818149 . - . ID=gene802;Name=RD04_RS04015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04015;old_locus_tag=RD04_04005 NZ_CP010961.1 Protein Homology CDS 817223 818149 . - 0 ID=cds786;Parent=gene802;Dbxref=Genbank:WP_019248607.1;Name=WP_019248607.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248607.1;transl_table=11 NZ_CP010961.1 RefSeq gene 818107 818589 . - . ID=gene803;Name=RD04_RS04020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04020;old_locus_tag=RD04_04010 NZ_CP010961.1 Protein Homology CDS 818107 818589 . - 0 ID=cds787;Parent=gene803;Dbxref=Genbank:WP_019247672.1;Name=WP_019247672.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247672.1;transl_table=11 NZ_CP010961.1 RefSeq gene 818576 818818 . + . ID=gene804;Name=RD04_RS04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04025;old_locus_tag=RD04_04015 NZ_CP010961.1 Protein Homology CDS 818576 818818 . + 0 ID=cds788;Parent=gene804;Dbxref=Genbank:WP_019248608.1;Name=WP_019248608.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248608.1;transl_table=11 NZ_CP010961.1 RefSeq gene 818914 819909 . + . ID=gene805;Name=RD04_RS04030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04030;old_locus_tag=RD04_04020 NZ_CP010961.1 Protein Homology CDS 818914 819909 . + 0 ID=cds789;Parent=gene805;Dbxref=Genbank:WP_010929746.1;Name=WP_010929746.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929746.1;transl_table=11 NZ_CP010961.1 RefSeq gene 819922 820806 . + . ID=gene806;Name=RD04_RS04035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04035;old_locus_tag=RD04_04025 NZ_CP010961.1 Protein Homology CDS 819922 820806 . + 0 ID=cds790;Parent=gene806;Dbxref=Genbank:WP_010929745.1;Name=WP_010929745.1;gbkey=CDS;product=MBL fold metallo-hydrolase;protein_id=WP_010929745.1;transl_table=11 NZ_CP010961.1 RefSeq gene 820893 822089 . + . ID=gene807;Name=RD04_RS04040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04040;old_locus_tag=RD04_04030 NZ_CP010961.1 Protein Homology CDS 820893 822089 . + 0 ID=cds791;Parent=gene807;Dbxref=Genbank:WP_010929744.1;Name=WP_010929744.1;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation;gbkey=CDS;product=acetyl-CoA acetyltransferase;protein_id=WP_010929744.1;transl_table=11 NZ_CP010961.1 RefSeq gene 822086 822499 . + . ID=gene808;Name=RD04_RS04045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04045;old_locus_tag=RD04_04035 NZ_CP010961.1 Protein Homology CDS 822086 822499 . + 0 ID=cds792;Parent=gene808;Dbxref=Genbank:WP_010929743.1;Name=WP_010929743.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929743.1;transl_table=11 NZ_CP010961.1 RefSeq gene 822512 823528 . + . ID=gene809;Name=RD04_RS04050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04050;old_locus_tag=RD04_04040 NZ_CP010961.1 Protein Homology CDS 822512 823528 . + 0 ID=cds793;Parent=gene809;Dbxref=Genbank:WP_010929742.1;Name=WP_010929742.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010929742.1;transl_table=11 NZ_CP010961.1 RefSeq gene 823538 825217 . + . ID=gene810;Name=RD04_RS04055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04055;old_locus_tag=RD04_04045 NZ_CP010961.1 Protein Homology CDS 823538 825217 . + 0 ID=cds794;Parent=gene810;Dbxref=Genbank:WP_010929741.1;Name=WP_010929741.1;gbkey=CDS;product=ATP-dependent acyl-CoA ligase;protein_id=WP_010929741.1;transl_table=11 NZ_CP010961.1 RefSeq gene 825214 825588 . + . ID=gene811;Name=RD04_RS04060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04060;old_locus_tag=RD04_04050 NZ_CP010961.1 Protein Homology CDS 825214 825588 . + 0 ID=cds795;Parent=gene811;Dbxref=Genbank:WP_004567893.1;Name=WP_004567893.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004567893.1;transl_table=11 NZ_CP010961.1 RefSeq gene 825585 826535 . - . ID=gene812;Name=RD04_RS04065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04065;old_locus_tag=RD04_04055 NZ_CP010961.1 Protein Homology CDS 825585 826535 . - 0 ID=cds796;Parent=gene812;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 826658 827386 . + . ID=gene813;Name=RD04_RS04070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04070;old_locus_tag=RD04_04060 NZ_CP010961.1 Protein Homology CDS 826658 827386 . + 0 ID=cds797;Parent=gene813;Dbxref=Genbank:WP_003814960.1;Name=WP_003814960.1;gbkey=CDS;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=WP_003814960.1;transl_table=11 NZ_CP010961.1 RefSeq gene 827483 828661 . + . ID=gene814;Name=RD04_RS04075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04075;old_locus_tag=RD04_04065 NZ_CP010961.1 Protein Homology CDS 827483 828661 . + 0 ID=cds798;Parent=gene814;Dbxref=Genbank:WP_010929739.1;Name=WP_010929739.1;gbkey=CDS;product=LPS export ABC transporter permease LptG;protein_id=WP_010929739.1;transl_table=11 NZ_CP010961.1 RefSeq gene 828658 829491 . + . ID=gene815;Name=RD04_RS04080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04080;old_locus_tag=RD04_04070 NZ_CP010961.1 Protein Homology CDS 828658 829491 . + 0 ID=cds799;Parent=gene815;Dbxref=Genbank:WP_010929738.1;Name=WP_010929738.1;gbkey=CDS;product=bis(5'-nucleosyl)-tetraphosphatase (symmetrical);protein_id=WP_010929738.1;transl_table=11 NZ_CP010961.1 RefSeq gene 829528 830268 . - . ID=gene816;Name=RD04_RS04085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04085;old_locus_tag=RD04_04075 NZ_CP010961.1 Protein Homology CDS 829528 830268 . - 0 ID=cds800;Parent=gene816;Dbxref=Genbank:WP_010929737.1;Name=WP_010929737.1;gbkey=CDS;product=acyltransferase;protein_id=WP_010929737.1;transl_table=11 NZ_CP010961.1 RefSeq gene 830388 831563 . - . ID=gene817;Name=RD04_RS04090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04090;old_locus_tag=RD04_04080 NZ_CP010961.1 Protein Homology CDS 830388 831563 . - 0 ID=cds801;Parent=gene817;Dbxref=Genbank:WP_010929736.1;Name=WP_010929736.1;Note=Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides;gbkey=CDS;product=dihydroorotase;protein_id=WP_010929736.1;transl_table=11 NZ_CP010961.1 RefSeq gene 831560 832513 . - . ID=gene818;Name=pyrB;gbkey=Gene;gene=pyrB;gene_biotype=protein_coding;locus_tag=RD04_RS04095;old_locus_tag=RD04_04085 NZ_CP010961.1 Protein Homology CDS 831560 832513 . - 0 ID=cds802;Parent=gene818;Dbxref=Genbank:WP_003820560.1;Name=WP_003820560.1;Note=catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis;gbkey=CDS;gene=pyrB;product=aspartate carbamoyltransferase;protein_id=WP_003820560.1;transl_table=11 NZ_CP010961.1 RefSeq gene 832527 832928 . - . ID=gene819;Name=RD04_RS04100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04100;old_locus_tag=RD04_04090 NZ_CP010961.1 Protein Homology CDS 832527 832928 . - 0 ID=cds803;Parent=gene819;Dbxref=Genbank:WP_010929735.1;Name=WP_010929735.1;gbkey=CDS;product=crossover junction endodeoxyribonuclease RuvA;protein_id=WP_010929735.1;transl_table=11 NZ_CP010961.1 RefSeq gene 832921 833526 . - . ID=gene820;Name=RD04_RS04105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04105;old_locus_tag=RD04_04095 NZ_CP010961.1 Protein Homology CDS 832921 833526 . - 0 ID=cds804;Parent=gene820;Dbxref=Genbank:WP_010927118.1;Name=WP_010927118.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010927118.1;transl_table=11 NZ_CP010961.1 RefSeq gene 833614 833778 . - . ID=gene821;Name=RD04_RS04110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04110;old_locus_tag=RD04_04100 NZ_CP010961.1 Protein Homology CDS 833614 833778 . - 0 ID=cds805;Parent=gene821;Dbxref=Genbank:WP_003814980.1;Name=WP_003814980.1;gbkey=CDS;product=rubredoxin;protein_id=WP_003814980.1;transl_table=11 NZ_CP010961.1 RefSeq gene 833895 834743 . + . ID=gene822;Name=RD04_RS04115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04115;old_locus_tag=RD04_04105 NZ_CP010961.1 Protein Homology CDS 833895 834743 . + 0 ID=cds806;Parent=gene822;Dbxref=Genbank:WP_010929734.1;Name=WP_010929734.1;gbkey=CDS;product=hydroxymethylpyrimidine/phosphomethylpyrimidine kinase;protein_id=WP_010929734.1;transl_table=11 NZ_CP010961.1 RefSeq gene 834740 835393 . + . ID=gene823;Name=RD04_RS04120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04120;old_locus_tag=RD04_04110 NZ_CP010961.1 Protein Homology CDS 834740 835393 . + 0 ID=cds807;Parent=gene823;Dbxref=Genbank:WP_003814984.1;Name=WP_003814984.1;gbkey=CDS;product=thiamine phosphate synthase;protein_id=WP_003814984.1;transl_table=11 NZ_CP010961.1 RefSeq gene 835410 836693 . + . ID=gene824;Name=RD04_RS04125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04125;old_locus_tag=RD04_04115 NZ_CP010961.1 Protein Homology CDS 835410 836693 . + 0 ID=cds808;Parent=gene824;Dbxref=Genbank:WP_010929733.1;Name=WP_010929733.1;Note=Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway;gbkey=CDS;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_010929733.1;transl_table=11 NZ_CP010961.1 RefSeq gene 836933 838558 . + . ID=gene825;Name=RD04_RS04130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04130;old_locus_tag=RD04_04120 NZ_CP010961.1 Protein Homology CDS 836933 838558 . + 0 ID=cds809;Parent=gene825;Dbxref=Genbank:WP_010929732.1;Name=WP_010929732.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929732.1;transl_table=11 NZ_CP010961.1 RefSeq gene 838652 839053 . - . ID=gene826;Name=RD04_RS04135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04135;old_locus_tag=RD04_04125 NZ_CP010961.1 Protein Homology CDS 838652 839053 . - 0 ID=cds810;Parent=gene826;Dbxref=Genbank:WP_003814990.1;Name=WP_003814990.1;gbkey=CDS;product=enamine deaminase RidA;protein_id=WP_003814990.1;transl_table=11 NZ_CP010961.1 RefSeq gene 839078 839512 . - . ID=gene827;Name=RD04_RS04140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04140;old_locus_tag=RD04_04130 NZ_CP010961.1 Protein Homology CDS 839078 839512 . - 0 ID=cds811;Parent=gene827;Dbxref=Genbank:WP_003814993.1;Name=WP_003814993.1;gbkey=CDS;product=4-hydroxybenzoyl-CoA thioesterase;protein_id=WP_003814993.1;transl_table=11 NZ_CP010961.1 RefSeq gene 839514 841163 . - . ID=gene828;Name=RD04_RS04145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04145;old_locus_tag=RD04_04135 NZ_CP010961.1 Protein Homology CDS 839514 841163 . - 0 ID=cds812;Parent=gene828;Dbxref=Genbank:WP_003814996.1;Name=WP_003814996.1;gbkey=CDS;product=2-aminobenzoate-CoA ligase;protein_id=WP_003814996.1;transl_table=11 NZ_CP010961.1 RefSeq gene 841204 842362 . - . ID=gene829;Name=RD04_RS04150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04150;old_locus_tag=RD04_04140;pseudo=true NZ_CP010961.1 Protein Homology CDS 841204 842362 . - 0 ID=cds813;Parent=gene829;Note=frameshifted;gbkey=CDS;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 842365 843228 . - . ID=gene830;Name=RD04_RS04155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04155;old_locus_tag=RD04_04145 NZ_CP010961.1 Protein Homology CDS 842365 843228 . - 0 ID=cds814;Parent=gene830;Dbxref=Genbank:WP_010929730.1;Name=WP_010929730.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010929730.1;transl_table=11 NZ_CP010961.1 RefSeq gene 843250 844043 . - . ID=gene831;Name=RD04_RS04160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04160;old_locus_tag=RD04_04150;pseudo=true NZ_CP010961.1 Protein Homology CDS 843250 844043 . - 0 ID=cds815;Parent=gene831;Note=frameshifted;gbkey=CDS;product=3-hydroxyacyl-CoA dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 844040 846386 . - . ID=gene832;Name=RD04_RS04165;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04165;old_locus_tag=RD04_04155;pseudo=true NZ_CP010961.1 Protein Homology CDS 844040 846386 . - 0 ID=cds816;Parent=gene832;Note=catalyzes the conversion of salicylyl-CoA to gentisyl-CoA%3B frameshifted;gbkey=CDS;product=salicylyl-CoA 5-hydroxylase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 846592 847296 . - . ID=gene833;Name=RD04_RS04170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04170;old_locus_tag=RD04_04160 NZ_CP010961.1 Protein Homology CDS 846592 847296 . - 0 ID=cds817;Parent=gene833;Dbxref=Genbank:WP_010929729.1;Name=WP_010929729.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010929729.1;transl_table=11 NZ_CP010961.1 RefSeq gene 847290 848084 . - . ID=gene834;Name=RD04_RS04175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04175;old_locus_tag=RD04_04165 NZ_CP010961.1 Protein Homology CDS 847290 848084 . - 0 ID=cds818;Parent=gene834;Dbxref=Genbank:WP_003815010.1;Name=WP_003815010.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003815010.1;transl_table=11 NZ_CP010961.1 RefSeq gene 848081 849046 . - . ID=gene835;Name=RD04_RS04180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04180;old_locus_tag=RD04_04170 NZ_CP010961.1 Protein Homology CDS 848081 849046 . - 0 ID=cds819;Parent=gene835;Dbxref=Genbank:WP_003815011.1;Name=WP_003815011.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_003815011.1;transl_table=11 NZ_CP010961.1 RefSeq gene 849050 849970 . - . ID=gene836;Name=RD04_RS04185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04185;old_locus_tag=RD04_04175 NZ_CP010961.1 Protein Homology CDS 849050 849970 . - 0 ID=cds820;Parent=gene836;Dbxref=Genbank:WP_003815013.1;Name=WP_003815013.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_003815013.1;transl_table=11 NZ_CP010961.1 RefSeq gene 850067 851230 . - . ID=gene837;Name=RD04_RS04190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04190;old_locus_tag=RD04_04180 NZ_CP010961.1 Protein Homology CDS 850067 851230 . - 0 ID=cds821;Parent=gene837;Dbxref=Genbank:WP_003815015.1;Name=WP_003815015.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003815015.1;transl_table=11 NZ_CP010961.1 RefSeq gene 851453 852343 . + . ID=gene838;Name=RD04_RS04195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04195;old_locus_tag=RD04_04185 NZ_CP010961.1 Protein Homology CDS 851453 852343 . + 0 ID=cds822;Parent=gene838;Dbxref=Genbank:WP_010929728.1;Name=WP_010929728.1;gbkey=CDS;product=esterase;protein_id=WP_010929728.1;transl_table=11 NZ_CP010961.1 RefSeq gene 852347 852850 . + . ID=gene839;Name=RD04_RS04200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04200;old_locus_tag=RD04_04190 NZ_CP010961.1 Protein Homology CDS 852347 852850 . + 0 ID=cds823;Parent=gene839;Dbxref=Genbank:WP_003815019.1;Name=WP_003815019.1;gbkey=CDS;product=MarR family transcriptional regulator;protein_id=WP_003815019.1;transl_table=11 NZ_CP010961.1 RefSeq gene 852893 853891 . + . ID=gene840;Name=RD04_RS04205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04205;old_locus_tag=RD04_04195 NZ_CP010961.1 Protein Homology CDS 852893 853891 . + 0 ID=cds824;Parent=gene840;Dbxref=Genbank:WP_010929727.1;Name=WP_010929727.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929727.1;transl_table=11 NZ_CP010961.1 RefSeq gene 853888 854838 . - . ID=gene841;Name=RD04_RS04210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04210;old_locus_tag=RD04_04200 NZ_CP010961.1 Protein Homology CDS 853888 854838 . - 0 ID=cds825;Parent=gene841;Dbxref=Genbank:WP_010930048.1;Name=WP_010930048.1;gbkey=CDS;product=transposase;protein_id=WP_010930048.1;transl_table=11 NZ_CP010961.1 RefSeq gene 854954 855214 . + . ID=gene842;Name=RD04_RS04215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04215;old_locus_tag=RD04_04205 NZ_CP010961.1 Protein Homology CDS 854954 855214 . + 0 ID=cds826;Parent=gene842;Dbxref=Genbank:WP_010929726.1;Name=WP_010929726.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929726.1;transl_table=11 NZ_CP010961.1 RefSeq gene 855406 856356 . + . ID=gene843;Name=RD04_RS04220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04220;old_locus_tag=RD04_04210 NZ_CP010961.1 Protein Homology CDS 855406 856356 . + 0 ID=cds827;Parent=gene843;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 856416 856976 . + . ID=gene844;Name=RD04_RS04225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04225;old_locus_tag=RD04_04215 NZ_CP010961.1 Protein Homology CDS 856416 856976 . + 0 ID=cds828;Parent=gene844;Dbxref=Genbank:WP_004566083.1;Name=WP_004566083.1;gbkey=CDS;product=5'-3'-deoxyribonucleotidase;protein_id=WP_004566083.1;transl_table=11 NZ_CP010961.1 RefSeq gene 857106 858445 . + . ID=gene845;Name=RD04_RS04230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04230;old_locus_tag=RD04_04220;pseudo=true NZ_CP010961.1 Protein Homology CDS 857106 858445 . + 0 ID=cds829;Parent=gene845;Note=frameshifted;gbkey=CDS;product=flagellar biosynthesis protein FlgA;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 858479 859360 . - . ID=gene846;Name=RD04_RS04235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04235;old_locus_tag=RD04_04225 NZ_CP010961.1 Protein Homology CDS 858479 859360 . - 0 ID=cds830;Parent=gene846;Dbxref=Genbank:WP_004566082.1;Name=WP_004566082.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_004566082.1;transl_table=11 NZ_CP010961.1 RefSeq gene 859474 860676 . + . ID=gene847;Name=RD04_RS04240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04240;old_locus_tag=RD04_04230 NZ_CP010961.1 Protein Homology CDS 859474 860676 . + 0 ID=cds831;Parent=gene847;Dbxref=Genbank:WP_010929725.1;Name=WP_010929725.1;gbkey=CDS;product=transporter;protein_id=WP_010929725.1;transl_table=11 NZ_CP010961.1 RefSeq gene 860805 862664 . - . ID=gene848;Name=RD04_RS04245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04245;old_locus_tag=RD04_04235 NZ_CP010961.1 Protein Homology CDS 860805 862664 . - 0 ID=cds832;Parent=gene848;Dbxref=Genbank:WP_003819105.1;Name=WP_003819105.1;Note=catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis;gbkey=CDS;product=dihydroxy-acid dehydratase;protein_id=WP_003819105.1;transl_table=11 NZ_CP010961.1 RefSeq gene 862742 863551 . - . ID=gene849;Name=RD04_RS04250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04250;old_locus_tag=RD04_04240 NZ_CP010961.1 Protein Homology CDS 862742 863551 . - 0 ID=cds833;Parent=gene849;Dbxref=Genbank:WP_003819104.1;Name=WP_003819104.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003819104.1;transl_table=11 NZ_CP010961.1 RefSeq gene 863622 864623 . + . ID=gene850;Name=RD04_RS04255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04255;old_locus_tag=RD04_04245 NZ_CP010961.1 Protein Homology CDS 863622 864623 . + 0 ID=cds834;Parent=gene850;Dbxref=Genbank:WP_010929724.1;Name=WP_010929724.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929724.1;transl_table=11 NZ_CP010961.1 RefSeq gene 864655 865515 . - . ID=gene851;Name=RD04_RS04260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04260;old_locus_tag=RD04_04250 NZ_CP010961.1 Protein Homology CDS 864655 865515 . - 0 ID=cds835;Parent=gene851;Dbxref=Genbank:WP_003807710.1;Name=WP_003807710.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003807710.1;transl_table=11 NZ_CP010961.1 RefSeq gene 865715 866719 . + . ID=gene852;Name=RD04_RS04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04265;old_locus_tag=RD04_04255 NZ_CP010961.1 Protein Homology CDS 865715 866719 . + 0 ID=cds836;Parent=gene852;Dbxref=Genbank:WP_010929723.1;Name=WP_010929723.1;gbkey=CDS;product=acetylesterase;protein_id=WP_010929723.1;transl_table=11 NZ_CP010961.1 RefSeq gene 866716 868302 . + . ID=gene853;Name=RD04_RS04270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04270;old_locus_tag=RD04_04260 NZ_CP010961.1 Protein Homology CDS 866716 868302 . + 0 ID=cds837;Parent=gene853;Dbxref=Genbank:WP_003819100.1;Name=WP_003819100.1;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_003819100.1;transl_table=11 NZ_CP010961.1 RefSeq gene 868311 869237 . + . ID=gene854;Name=RD04_RS04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04275;old_locus_tag=RD04_04265 NZ_CP010961.1 Protein Homology CDS 868311 869237 . + 0 ID=cds838;Parent=gene854;Dbxref=Genbank:WP_003807706.1;Name=WP_003807706.1;gbkey=CDS;product=glyoxylate/hydroxypyruvate reductase A;protein_id=WP_003807706.1;transl_table=11 NZ_CP010961.1 RefSeq gene 869260 869886 . + . ID=gene855;Name=RD04_RS04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04280;old_locus_tag=RD04_04270 NZ_CP010961.1 Protein Homology CDS 869260 869886 . + 0 ID=cds839;Parent=gene855;Dbxref=Genbank:WP_003807705.1;Name=WP_003807705.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003807705.1;transl_table=11 NZ_CP010961.1 RefSeq gene 869985 870935 . + . ID=gene856;Name=RD04_RS04285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04285;old_locus_tag=RD04_04275 NZ_CP010961.1 Protein Homology CDS 869985 870935 . + 0 ID=cds840;Parent=gene856;Dbxref=Genbank:WP_005015810.1;Name=WP_005015810.1;gbkey=CDS;product=transposase;protein_id=WP_005015810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 870932 872068 . - . ID=gene857;Name=RD04_RS04290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04290;old_locus_tag=RD04_04280 NZ_CP010961.1 Protein Homology CDS 870932 872068 . - 0 ID=cds841;Parent=gene857;Dbxref=Genbank:WP_014906092.1;Name=WP_014906092.1;gbkey=CDS;product=2-alkenal reductase;protein_id=WP_014906092.1;transl_table=11 NZ_CP010961.1 RefSeq gene 872122 872898 . + . ID=gene858;Name=RD04_RS04295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04295;old_locus_tag=RD04_04285 NZ_CP010961.1 Protein Homology CDS 872122 872898 . + 0 ID=cds842;Parent=gene858;Dbxref=Genbank:WP_010927226.1;Name=WP_010927226.1;gbkey=CDS;product=Nif3-like dinuclear metal center hexameric protein;protein_id=WP_010927226.1;transl_table=11 NZ_CP010961.1 RefSeq gene 872923 873381 . - . ID=gene859;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=RD04_RS04300;old_locus_tag=RD04_04290 NZ_CP010961.1 Protein Homology CDS 872923 873381 . - 0 ID=cds843;Parent=gene859;Dbxref=Genbank:WP_010929721.1;Name=WP_010929721.1;Note=homopentamer%3B channel that opens in response to pressure or hypoosmotic shock;gbkey=CDS;gene=mscL;product=large-conductance mechanosensitive channel;protein_id=WP_010929721.1;transl_table=11 NZ_CP010961.1 RefSeq gene 873521 874162 . + . ID=gene860;Name=RD04_RS04305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04305;old_locus_tag=RD04_04295 NZ_CP010961.1 Protein Homology CDS 873521 874162 . + 0 ID=cds844;Parent=gene860;Dbxref=Genbank:WP_003815815.1;Name=WP_003815815.1;gbkey=CDS;product=ubiquinol-cytochrome c reductase iron-sulfur subunit;protein_id=WP_003815815.1;transl_table=11 NZ_CP010961.1 RefSeq gene 874227 875480 . + . ID=gene861;Name=RD04_RS04310;end_range=875480,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04310;old_locus_tag=RD04_04300;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 874227 875480 . + 0 ID=cds845;Parent=gene861;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=875480,.;gbkey=CDS;partial=true;product=cytochrome B;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 875578 876528 . + . ID=gene862;Name=RD04_RS04315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04315;old_locus_tag=RD04_04305 NZ_CP010961.1 Protein Homology CDS 875578 876528 . + 0 ID=cds846;Parent=gene862;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 876684 877532 . + . ID=gene863;Name=RD04_RS04320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04320;old_locus_tag=RD04_04310 NZ_CP010961.1 Protein Homology CDS 876684 877532 . + 0 ID=cds847;Parent=gene863;Dbxref=Genbank:WP_010929720.1;Name=WP_010929720.1;gbkey=CDS;product=cytochrome c;protein_id=WP_010929720.1;transl_table=11 NZ_CP010961.1 RefSeq gene 877691 878302 . + . ID=gene864;Name=RD04_RS04325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04325;old_locus_tag=RD04_04315 NZ_CP010961.1 Protein Homology CDS 877691 878302 . + 0 ID=cds848;Parent=gene864;Dbxref=Genbank:WP_003815819.1;Name=WP_003815819.1;gbkey=CDS;product=stringent starvation protein A;protein_id=WP_003815819.1;transl_table=11 NZ_CP010961.1 RefSeq gene 878312 878761 . + . ID=gene865;Name=RD04_RS04330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04330;old_locus_tag=RD04_04320 NZ_CP010961.1 Protein Homology CDS 878312 878761 . + 0 ID=cds849;Parent=gene865;Dbxref=Genbank:WP_003815821.1;Name=WP_003815821.1;gbkey=CDS;product=stringent starvation protein B;protein_id=WP_003815821.1;transl_table=11 NZ_CP010961.1 RefSeq gene 878839 878914 . + . ID=gene866;Name=RD04_RS04335;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS04335;old_locus_tag=RD04_04325 NZ_CP010961.1 tRNAscan-SE tRNA 878839 878914 . + . ID=rna16;Parent=gene866;anticodon=(pos:878872..878874);gbkey=tRNA;product=tRNA-Thr NZ_CP010961.1 tRNAscan-SE exon 878839 878914 . + . ID=id18;Parent=rna16;anticodon=(pos:878872..878874);gbkey=tRNA;product=tRNA-Thr NZ_CP010961.1 RefSeq gene 879280 879420 . - . ID=gene867;Name=RD04_RS04340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04340;old_locus_tag=RD04_04330 NZ_CP010961.1 Protein Homology CDS 879280 879420 . - 0 ID=cds850;Parent=gene867;Dbxref=Genbank:WP_010929719.1;Name=WP_010929719.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929719.1;transl_table=11 NZ_CP010961.1 RefSeq gene 879428 879589 . - . ID=gene868;Name=RD04_RS04345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04345;old_locus_tag=RD04_04335 NZ_CP010961.1 Protein Homology CDS 879428 879589 . - 0 ID=cds851;Parent=gene868;Dbxref=Genbank:WP_010929718.1;Name=WP_010929718.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929718.1;transl_table=11 NZ_CP010961.1 RefSeq gene 879867 880817 . + . ID=gene869;Name=RD04_RS04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04350;old_locus_tag=RD04_04340 NZ_CP010961.1 Protein Homology CDS 879867 880817 . + 0 ID=cds852;Parent=gene869;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 880812 881651 . - . ID=gene870;Name=RD04_RS04355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04355;old_locus_tag=RD04_04345;partial=true;pseudo=true;start_range=.,880812 NZ_CP010961.1 Protein Homology CDS 880812 881651 . - 0 ID=cds853;Parent=gene870;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=porin;pseudo=true;start_range=.,880812;transl_table=11 NZ_CP010961.1 RefSeq gene 881861 882139 . - . ID=gene871;Name=RD04_RS04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04360;old_locus_tag=RD04_04350 NZ_CP010961.1 Protein Homology CDS 881861 882139 . - 0 ID=cds854;Parent=gene871;Dbxref=Genbank:WP_010929717.1;Name=WP_010929717.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929717.1;transl_table=11 NZ_CP010961.1 RefSeq gene 882383 883269 . + . ID=gene872;Name=RD04_RS04365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04365;old_locus_tag=RD04_04355;pseudo=true NZ_CP010961.1 Protein Homology CDS 882383 883269 . + 0 ID=cds855;Parent=gene872;Note=frameshifted;gbkey=CDS;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 883282 883830 . - . ID=gene873;Name=RD04_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04370;old_locus_tag=RD04_04360 NZ_CP010961.1 Protein Homology CDS 883282 883830 . - 0 ID=cds856;Parent=gene873;Dbxref=Genbank:WP_010929716.1;Name=WP_010929716.1;gbkey=CDS;product=adenine phosphoribosyltransferase;protein_id=WP_010929716.1;transl_table=11 NZ_CP010961.1 RefSeq gene 883884 884834 . - . ID=gene874;Name=RD04_RS04375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04375;old_locus_tag=RD04_04365 NZ_CP010961.1 Protein Homology CDS 883884 884834 . - 0 ID=cds857;Parent=gene874;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 884942 886621 . - . ID=gene875;Name=RD04_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04380;old_locus_tag=RD04_04370 NZ_CP010961.1 Protein Homology CDS 884942 886621 . - 0 ID=cds858;Parent=gene875;Dbxref=Genbank:WP_010929715.1;Name=WP_010929715.1;gbkey=CDS;product=thiol reductant ABC exporter subunit CydC;protein_id=WP_010929715.1;transl_table=11 NZ_CP010961.1 RefSeq gene 886618 888369 . - . ID=gene876;Name=RD04_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04385;old_locus_tag=RD04_04375 NZ_CP010961.1 Protein Homology CDS 886618 888369 . - 0 ID=cds859;Parent=gene876;Dbxref=Genbank:WP_010929714.1;Name=WP_010929714.1;gbkey=CDS;product=thiol reductant ABC exporter subunit CydD;protein_id=WP_010929714.1;transl_table=11 NZ_CP010961.1 RefSeq gene 888366 888491 . - . ID=gene877;Name=RD04_RS04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04390;old_locus_tag=RD04_04380 NZ_CP010961.1 Protein Homology CDS 888366 888491 . - 0 ID=cds860;Parent=gene877;Dbxref=Genbank:WP_003817696.1;Name=WP_003817696.1;gbkey=CDS;product=cyd operon protein YbgT;protein_id=WP_003817696.1;transl_table=11 NZ_CP010961.1 RefSeq gene 888505 889659 . - . ID=gene878;Name=RD04_RS04395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04395;old_locus_tag=RD04_04385 NZ_CP010961.1 Protein Homology CDS 888505 889659 . - 0 ID=cds861;Parent=gene878;Dbxref=Genbank:WP_004567834.1;Name=WP_004567834.1;gbkey=CDS;product=cytochrome D ubiquinol oxidase subunit II;protein_id=WP_004567834.1;transl_table=11 NZ_CP010961.1 RefSeq gene 889675 891252 . - . ID=gene879;Name=RD04_RS04400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04400;old_locus_tag=RD04_04390 NZ_CP010961.1 Protein Homology CDS 889675 891252 . - 0 ID=cds862;Parent=gene879;Dbxref=Genbank:WP_023852659.1;Name=WP_023852659.1;Note=part of the aerobic respiratory chain%3B catalyzes the ubiquinol to ubiquinone;gbkey=CDS;product=cytochrome d ubiquinol oxidase subunit I;protein_id=WP_023852659.1;transl_table=11 NZ_CP010961.1 RefSeq gene 891378 891923 . - . ID=gene880;Name=RD04_RS04405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04405;old_locus_tag=RD04_04395 NZ_CP010961.1 Protein Homology CDS 891378 891923 . - 0 ID=cds863;Parent=gene880;Dbxref=Genbank:WP_010929712.1;Name=WP_010929712.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010929712.1;transl_table=11 NZ_CP010961.1 RefSeq gene 892097 892468 . - . ID=gene881;Name=RD04_RS04410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04410;old_locus_tag=RD04_04400 NZ_CP010961.1 GeneMarkS+ CDS 892097 892468 . - 0 ID=cds864;Parent=gene881;Dbxref=Genbank:WP_023852652.1;Name=WP_023852652.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_023852652.1;transl_table=11 NZ_CP010961.1 RefSeq gene 892483 893433 . - . ID=gene882;Name=RD04_RS04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04415;old_locus_tag=RD04_04405 NZ_CP010961.1 Protein Homology CDS 892483 893433 . - 0 ID=cds865;Parent=gene882;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 893523 894128 . + . ID=gene883;Name=RD04_RS04420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04420;old_locus_tag=RD04_04410;partial=true;pseudo=true;start_range=.,893523 NZ_CP010961.1 Protein Homology CDS 893523 894128 . + 0 ID=cds866;Parent=gene883;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=DNA alkylation response protein;pseudo=true;start_range=.,893523;transl_table=11 NZ_CP010961.1 RefSeq gene 894164 895141 . + . ID=gene884;Name=RD04_RS04425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04425;old_locus_tag=RD04_04415 NZ_CP010961.1 Protein Homology CDS 894164 895141 . + 0 ID=cds867;Parent=gene884;Dbxref=Genbank:WP_050818140.1;Name=WP_050818140.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_050818140.1;transl_table=11 NZ_CP010961.1 RefSeq gene 895155 896279 . + . ID=gene885;Name=RD04_RS04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04430;old_locus_tag=RD04_04420 NZ_CP010961.1 Protein Homology CDS 895155 896279 . + 0 ID=cds868;Parent=gene885;Dbxref=Genbank:WP_010929710.1;Name=WP_010929710.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010929710.1;transl_table=11 NZ_CP010961.1 RefSeq gene 896287 898040 . - . ID=gene886;Name=RD04_RS04435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04435;old_locus_tag=RD04_04425;pseudo=true NZ_CP010961.1 Protein Homology CDS 896287 898040 . - 0 ID=cds869;Parent=gene886;Note=frameshifted;gbkey=CDS;product=gamma-glutamyltransferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 898147 899046 . + . ID=gene887;Name=RD04_RS04440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04440;old_locus_tag=RD04_04430 NZ_CP010961.1 Protein Homology CDS 898147 899046 . + 0 ID=cds870;Parent=gene887;Dbxref=Genbank:WP_010929709.1;Name=WP_010929709.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010929709.1;transl_table=11 NZ_CP010961.1 RefSeq gene 899111 900094 . - . ID=gene888;Name=RD04_RS04445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04445;old_locus_tag=RD04_04435 NZ_CP010961.1 Protein Homology CDS 899111 900094 . - 0 ID=cds871;Parent=gene888;Dbxref=Genbank:WP_003814324.1;Name=WP_003814324.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003814324.1;transl_table=11 NZ_CP010961.1 RefSeq gene 900230 901210 . + . ID=gene889;Name=RD04_RS04450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04450;old_locus_tag=RD04_04440 NZ_CP010961.1 Protein Homology CDS 900230 901210 . + 0 ID=cds872;Parent=gene889;Dbxref=Genbank:WP_010929708.1;Name=WP_010929708.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929708.1;transl_table=11 NZ_CP010961.1 RefSeq gene 901227 902618 . - . ID=gene890;Name=RD04_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04455;old_locus_tag=RD04_04445 NZ_CP010961.1 Protein Homology CDS 901227 902618 . - 0 ID=cds873;Parent=gene890;Dbxref=Genbank:WP_010929707.1;Name=WP_010929707.1;gbkey=CDS;product=class II fumarate hydratase;protein_id=WP_010929707.1;transl_table=11 NZ_CP010961.1 RefSeq gene 902770 903306 . + . ID=gene891;Name=RD04_RS04460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04460;old_locus_tag=RD04_04450 NZ_CP010961.1 Protein Homology CDS 902770 903306 . + 0 ID=cds874;Parent=gene891;Dbxref=Genbank:WP_010929706.1;Name=WP_010929706.1;gbkey=CDS;product=tRNA threonylcarbamoyladenosine biosynthesis protein TsaE;protein_id=WP_010929706.1;transl_table=11 NZ_CP010961.1 RefSeq gene 903237 904622 . + . ID=gene892;Name=RD04_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04465;old_locus_tag=RD04_04455 NZ_CP010961.1 Protein Homology CDS 903237 904622 . + 0 ID=cds875;Parent=gene892;Dbxref=Genbank:WP_019247543.1;Name=WP_019247543.1;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_019247543.1;transl_table=11 NZ_CP010961.1 RefSeq gene 904765 905385 . - . ID=gene893;Name=RD04_RS04470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04470;old_locus_tag=RD04_04460 NZ_CP010961.1 Protein Homology CDS 904765 905385 . - 0 ID=cds876;Parent=gene893;Dbxref=Genbank:WP_033446171.1;Name=WP_033446171.1;gbkey=CDS;product=membrane protein;protein_id=WP_033446171.1;transl_table=11 NZ_CP010961.1 RefSeq gene 905490 907379 . + . ID=gene894;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=RD04_RS04475;old_locus_tag=RD04_04465 NZ_CP010961.1 Protein Homology CDS 905490 907379 . + 0 ID=cds877;Parent=gene894;Dbxref=Genbank:WP_023997118.1;Name=WP_023997118.1;Note=This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex;gbkey=CDS;gene=mutL;product=DNA mismatch repair protein MutL;protein_id=WP_023997118.1;transl_table=11 NZ_CP010961.1 RefSeq gene 907376 908317 . + . ID=gene895;Name=RD04_RS04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04480;old_locus_tag=RD04_04470 NZ_CP010961.1 Protein Homology CDS 907376 908317 . + 0 ID=cds878;Parent=gene895;Dbxref=Genbank:WP_003814337.1;Name=WP_003814337.1;gbkey=CDS;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_003814337.1;transl_table=11 NZ_CP010961.1 RefSeq gene 908423 909472 . - . ID=gene896;Name=RD04_RS04485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04485;old_locus_tag=RD04_04475 NZ_CP010961.1 Protein Homology CDS 908423 909472 . - 0 ID=cds879;Parent=gene896;Dbxref=Genbank:WP_003814339.1;Name=WP_003814339.1;Note=catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis;gbkey=CDS;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_003814339.1;transl_table=11 NZ_CP010961.1 RefSeq gene 909725 910426 . + . ID=gene897;Name=RD04_RS04490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04490;old_locus_tag=RD04_04480 NZ_CP010961.1 Protein Homology CDS 909725 910426 . + 0 ID=cds880;Parent=gene897;Dbxref=Genbank:WP_010929704.1;Name=WP_010929704.1;gbkey=CDS;product=DnaA regulatory inactivator Hda;protein_id=WP_010929704.1;transl_table=11 NZ_CP010961.1 RefSeq gene 910423 911121 . + . ID=gene898;Name=RD04_RS04495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04495;old_locus_tag=RD04_04485 NZ_CP010961.1 Protein Homology CDS 910423 911121 . + 0 ID=cds881;Parent=gene898;Dbxref=Genbank:WP_010929703.1;Name=WP_010929703.1;gbkey=CDS;product=phosphoserine phosphatase;protein_id=WP_010929703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 911122 912477 . + . ID=gene899;Name=RD04_RS04500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04500;old_locus_tag=RD04_04490 NZ_CP010961.1 Protein Homology CDS 911122 912477 . + 0 ID=cds882;Parent=gene899;Dbxref=Genbank:WP_010929702.1;Name=WP_010929702.1;gbkey=CDS;product=polynucleotide adenylyltransferase PcnB;protein_id=WP_010929702.1;transl_table=11 NZ_CP010961.1 RefSeq gene 912474 912965 . + . ID=gene900;Name=RD04_RS04505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04505;old_locus_tag=RD04_04495 NZ_CP010961.1 Protein Homology CDS 912474 912965 . + 0 ID=cds883;Parent=gene900;Dbxref=Genbank:WP_010929701.1;Name=WP_010929701.1;gbkey=CDS;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase;protein_id=WP_010929701.1;transl_table=11 NZ_CP010961.1 RefSeq gene 912984 913940 . - . ID=gene901;Name=RD04_RS04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04510;old_locus_tag=RD04_04500 NZ_CP010961.1 Protein Homology CDS 912984 913940 . - 0 ID=cds884;Parent=gene901;Dbxref=Genbank:WP_003814351.1;Name=WP_003814351.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814351.1;transl_table=11 NZ_CP010961.1 RefSeq gene 913967 915354 . - . ID=gene902;Name=RD04_RS04515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04515;old_locus_tag=RD04_04505;pseudo=true NZ_CP010961.1 Protein Homology CDS 913967 915354 . - 0 ID=cds885;Parent=gene902;Note=frameshifted;gbkey=CDS;product=MmgE/PrpD family protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 915351 917453 . - . ID=gene903;Name=RD04_RS04520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04520;old_locus_tag=RD04_04510 NZ_CP010961.1 Protein Homology CDS 915351 917453 . - 0 ID=cds886;Parent=gene903;Dbxref=Genbank:WP_003814355.1;Name=WP_003814355.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814355.1;transl_table=11 NZ_CP010961.1 RefSeq gene 917624 918667 . + . ID=gene904;Name=RD04_RS04525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04525;old_locus_tag=RD04_04515 NZ_CP010961.1 Protein Homology CDS 917624 918667 . + 0 ID=cds887;Parent=gene904;Dbxref=Genbank:WP_003814356.1;Name=WP_003814356.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter substrate-binding protein;protein_id=WP_003814356.1;transl_table=11 NZ_CP010961.1 RefSeq gene 918711 919454 . + . ID=gene905;Name=RD04_RS04530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04530;old_locus_tag=RD04_04520 NZ_CP010961.1 Protein Homology CDS 918711 919454 . + 0 ID=cds888;Parent=gene905;Dbxref=Genbank:WP_003814358.1;Name=WP_003814358.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_003814358.1;transl_table=11 NZ_CP010961.1 RefSeq gene 919471 920226 . - . ID=gene906;Name=RD04_RS04535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04535;old_locus_tag=RD04_04525 NZ_CP010961.1 Protein Homology CDS 919471 920226 . - 0 ID=cds889;Parent=gene906;Dbxref=Genbank:WP_019247627.1;Name=WP_019247627.1;Note=catalyzes the formation of gamma hydroxybutyrate from succinate semialdehyde;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247627.1;transl_table=11 NZ_CP010961.1 RefSeq gene 920476 920886 . - . ID=gene907;Name=RD04_RS04540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04540;old_locus_tag=RD04_04530 NZ_CP010961.1 Protein Homology CDS 920476 920886 . - 0 ID=cds890;Parent=gene907;Dbxref=Genbank:WP_003814363.1;Name=WP_003814363.1;gbkey=CDS;product=4-carboxymuconolactone decarboxylase;protein_id=WP_003814363.1;transl_table=11 NZ_CP010961.1 RefSeq gene 921014 921839 . + . ID=gene908;Name=RD04_RS04545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04545;old_locus_tag=RD04_04535;pseudo=true NZ_CP010961.1 Protein Homology CDS 921014 921839 . + 0 ID=cds891;Parent=gene908;Note=frameshifted;gbkey=CDS;product=MBL fold hydrolase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 921836 922633 . + . ID=gene909;Name=RD04_RS04550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04550;old_locus_tag=RD04_04540 NZ_CP010961.1 Protein Homology CDS 921836 922633 . + 0 ID=cds892;Parent=gene909;Dbxref=Genbank:WP_010929700.1;Name=WP_010929700.1;gbkey=CDS;product=beta-D-hydroxybutyrate dehydrogenase;protein_id=WP_010929700.1;transl_table=11 NZ_CP010961.1 RefSeq gene 922732 923682 . + . ID=gene910;Name=RD04_RS04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04555;old_locus_tag=RD04_04545 NZ_CP010961.1 Protein Homology CDS 922732 923682 . + 0 ID=cds893;Parent=gene910;Dbxref=Genbank:WP_010930742.1;Name=WP_010930742.1;gbkey=CDS;product=transposase;protein_id=WP_010930742.1;transl_table=11 NZ_CP010961.1 RefSeq gene 923679 924629 . - . ID=gene911;Name=RD04_RS04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04560;old_locus_tag=RD04_04550 NZ_CP010961.1 Protein Homology CDS 923679 924629 . - 0 ID=cds894;Parent=gene911;Dbxref=Genbank:WP_010927663.1;Name=WP_010927663.1;gbkey=CDS;product=transposase;protein_id=WP_010927663.1;transl_table=11 NZ_CP010961.1 RefSeq gene 924716 925666 . - . ID=gene912;Name=RD04_RS04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04565;old_locus_tag=RD04_04555 NZ_CP010961.1 Protein Homology CDS 924716 925666 . - 0 ID=cds895;Parent=gene912;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 925781 926782 . - . ID=gene913;Name=RD04_RS04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04570;old_locus_tag=RD04_04560 NZ_CP010961.1 Protein Homology CDS 925781 926782 . - 0 ID=cds896;Parent=gene913;Dbxref=Genbank:WP_010929681.1;Name=WP_010929681.1;gbkey=CDS;product=restriction endonuclease;protein_id=WP_010929681.1;transl_table=11 NZ_CP010961.1 RefSeq gene 926873 927439 . - . ID=gene914;Name=RD04_RS04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04575;old_locus_tag=RD04_04565 NZ_CP010961.1 Protein Homology CDS 926873 927439 . - 0 ID=cds897;Parent=gene914;Dbxref=Genbank:WP_010929682.1;Name=WP_010929682.1;gbkey=CDS;product=preprotein translocase subunit SecD;protein_id=WP_010929682.1;transl_table=11 NZ_CP010961.1 cmsearch binding_site 927583 927694 . + . ID=id19;Dbxref=RFAM:RF00059;Note=TPP riboswitch;gbkey=misc_binding NZ_CP010961.1 RefSeq gene 927758 929671 . + . ID=gene915;Name=RD04_RS04580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04580;old_locus_tag=RD04_04570 NZ_CP010961.1 Protein Homology CDS 927758 929671 . + 0 ID=cds898;Parent=gene915;Dbxref=Genbank:WP_010929683.1;Name=WP_010929683.1;Note=catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis;gbkey=CDS;product=phosphomethylpyrimidine synthase;protein_id=WP_010929683.1;transl_table=11 NZ_CP010961.1 RefSeq gene 929713 931143 . - . ID=gene916;Name=RD04_RS04585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04585;old_locus_tag=RD04_04575 NZ_CP010961.1 Protein Homology CDS 929713 931143 . - 0 ID=cds899;Parent=gene916;Dbxref=Genbank:WP_010929684.1;Name=WP_010929684.1;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_010929684.1;transl_table=11 NZ_CP010961.1 RefSeq gene 931256 932668 . - . ID=gene917;Name=RD04_RS04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04590;old_locus_tag=RD04_04580 NZ_CP010961.1 Protein Homology CDS 931256 932668 . - 0 ID=cds900;Parent=gene917;Dbxref=Genbank:WP_019247308.1;Name=WP_019247308.1;gbkey=CDS;product=D-2-hydroxyacid dehydrogenase;protein_id=WP_019247308.1;transl_table=11 NZ_CP010961.1 RefSeq gene 932685 933380 . - . ID=gene918;Name=RD04_RS04595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04595;old_locus_tag=RD04_04585 NZ_CP010961.1 Protein Homology CDS 932685 933380 . - 0 ID=cds901;Parent=gene918;Dbxref=Genbank:WP_003818947.1;Name=WP_003818947.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_003818947.1;transl_table=11 NZ_CP010961.1 RefSeq gene 933599 934548 . + . ID=gene919;Name=RD04_RS04600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04600;old_locus_tag=RD04_04590;pseudo=true NZ_CP010961.1 Protein Homology CDS 933599 934548 . + 0 ID=cds902;Parent=gene919;Note=frameshifted;gbkey=CDS;product=integrase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 934573 935472 . - . ID=gene920;Name=RD04_RS04605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04605;old_locus_tag=RD04_04595 NZ_CP010961.1 Protein Homology CDS 934573 935472 . - 0 ID=cds903;Parent=gene920;Dbxref=Genbank:WP_010929687.1;Name=WP_010929687.1;gbkey=CDS;product=virginiamycin B lyase;protein_id=WP_010929687.1;transl_table=11 NZ_CP010961.1 RefSeq gene 935627 936175 . + . ID=gene921;Name=RD04_RS04610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04610;old_locus_tag=RD04_04600 NZ_CP010961.1 Protein Homology CDS 935627 936175 . + 0 ID=cds904;Parent=gene921;Dbxref=Genbank:WP_010929688.1;Name=WP_010929688.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_010929688.1;transl_table=11 NZ_CP010961.1 RefSeq gene 936214 936933 . - . ID=gene922;Name=RD04_RS04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04615;old_locus_tag=RD04_04605 NZ_CP010961.1 Protein Homology CDS 936214 936933 . - 0 ID=cds905;Parent=gene922;Dbxref=Genbank:WP_010929689.1;Name=WP_010929689.1;gbkey=CDS;product=7-cyano-7-deazaguanine synthase;protein_id=WP_010929689.1;transl_table=11 NZ_CP010961.1 RefSeq gene 937104 939947 . + . ID=gene923;Name=RD04_RS04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04620;old_locus_tag=RD04_04610 NZ_CP010961.1 Protein Homology CDS 937104 939947 . + 0 ID=cds906;Parent=gene923;Dbxref=Genbank:WP_023994893.1;Name=WP_023994893.1;gbkey=CDS;product=phosphoenolpyruvate carboxylase;protein_id=WP_023994893.1;transl_table=11 NZ_CP010961.1 RefSeq gene 940541 943336 . + . ID=gene924;Name=RD04_RS04625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04625;old_locus_tag=RD04_04615 NZ_CP010961.1 Protein Homology CDS 940541 943336 . + 0 ID=cds907;Parent=gene924;Dbxref=Genbank:WP_033446404.1;Name=WP_033446404.1;gbkey=CDS;product=peptidase S8;protein_id=WP_033446404.1;transl_table=11 NZ_CP010961.1 RefSeq gene 943794 944726 . + . ID=gene925;Name=RD04_RS04630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04630;old_locus_tag=RD04_04620 NZ_CP010961.1 Protein Homology CDS 943794 944726 . + 0 ID=cds908;Parent=gene925;Dbxref=Genbank:WP_010929692.1;Name=WP_010929692.1;Note=converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA;gbkey=CDS;product=3-hydroxybutyryl-CoA dehydrogenase;protein_id=WP_010929692.1;transl_table=11 NZ_CP010961.1 RefSeq gene 944838 946187 . + . ID=gene926;Name=RD04_RS04635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04635;old_locus_tag=RD04_04625 NZ_CP010961.1 Protein Homology CDS 944838 946187 . + 0 ID=cds909;Parent=gene926;Dbxref=Genbank:WP_010929693.1;Name=WP_010929693.1;gbkey=CDS;product=short-chain fatty acids transporter;protein_id=WP_010929693.1;transl_table=11 NZ_CP010961.1 RefSeq gene 946219 946944 . + . ID=gene927;Name=RD04_RS04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04640;old_locus_tag=RD04_04630 NZ_CP010961.1 Protein Homology CDS 946219 946944 . + 0 ID=cds910;Parent=gene927;Dbxref=Genbank:WP_010929694.1;Name=WP_010929694.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_010929694.1;transl_table=11 NZ_CP010961.1 RefSeq gene 946995 947777 . - . ID=gene928;Name=RD04_RS04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04645;old_locus_tag=RD04_04635 NZ_CP010961.1 Protein Homology CDS 946995 947777 . - 0 ID=cds911;Parent=gene928;Dbxref=Genbank:WP_033446325.1;Name=WP_033446325.1;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_033446325.1;transl_table=11 NZ_CP010961.1 RefSeq gene 947976 948662 . + . ID=gene929;Name=RD04_RS04650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04650;old_locus_tag=RD04_04640 NZ_CP010961.1 Protein Homology CDS 947976 948662 . + 0 ID=cds912;Parent=gene929;Dbxref=Genbank:WP_010929696.1;Name=WP_010929696.1;gbkey=CDS;product=3-oxoadipate CoA-transferase subunit A;protein_id=WP_010929696.1;transl_table=11 NZ_CP010961.1 RefSeq gene 948662 949306 . + . ID=gene930;Name=RD04_RS04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04655;old_locus_tag=RD04_04645 NZ_CP010961.1 Protein Homology CDS 948662 949306 . + 0 ID=cds913;Parent=gene930;Dbxref=Genbank:WP_003819086.1;Name=WP_003819086.1;gbkey=CDS;product=3-oxoadipate CoA-transferase subunit B;protein_id=WP_003819086.1;transl_table=11 NZ_CP010961.1 RefSeq gene 949363 949638 . + . ID=gene931;Name=RD04_RS04660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04660;old_locus_tag=RD04_04650 NZ_CP010961.1 Protein Homology CDS 949363 949638 . + 0 ID=cds914;Parent=gene931;Dbxref=Genbank:WP_003807674.1;Name=WP_003807674.1;gbkey=CDS;product=muconolactone delta-isomerase;protein_id=WP_003807674.1;transl_table=11 NZ_CP010961.1 RefSeq gene 949664 949960 . + . ID=gene932;Name=RD04_RS04665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04665;old_locus_tag=RD04_04655 NZ_CP010961.1 Protein Homology CDS 949664 949960 . + 0 ID=cds915;Parent=gene932;Dbxref=Genbank:WP_003807672.1;Name=WP_003807672.1;Note=unknown function%3B YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase%2C but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity;gbkey=CDS;product=hypothetical protein;protein_id=WP_003807672.1;transl_table=11 NZ_CP010961.1 RefSeq gene 950006 950785 . + . ID=gene933;Name=RD04_RS04670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04670;old_locus_tag=RD04_04660 NZ_CP010961.1 Protein Homology CDS 950006 950785 . + 0 ID=cds916;Parent=gene933;Dbxref=Genbank:WP_010929697.1;Name=WP_010929697.1;gbkey=CDS;product=3-oxoadipate enol-lactonase;protein_id=WP_010929697.1;transl_table=11 NZ_CP010961.1 RefSeq gene 950791 951831 . + . ID=gene934;Name=RD04_RS04675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04675;old_locus_tag=RD04_04665 NZ_CP010961.1 Protein Homology CDS 950791 951831 . + 0 ID=cds917;Parent=gene934;Dbxref=Genbank:WP_023853200.1;Name=WP_023853200.1;gbkey=CDS;product=cyclase;protein_id=WP_023853200.1;transl_table=11 NZ_CP010961.1 RefSeq gene 951936 952259 . - . ID=gene935;Name=RD04_RS04680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04680;old_locus_tag=RD04_04670 NZ_CP010961.1 Protein Homology CDS 951936 952259 . - 0 ID=cds918;Parent=gene935;Dbxref=Genbank:WP_010929699.1;Name=WP_010929699.1;gbkey=CDS;product=phosphate starvation-inducible protein;protein_id=WP_010929699.1;transl_table=11 NZ_CP010961.1 RefSeq gene 952416 953366 . - . ID=gene936;Name=RD04_RS04685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04685;old_locus_tag=RD04_04675 NZ_CP010961.1 Protein Homology CDS 952416 953366 . - 0 ID=cds919;Parent=gene936;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 953468 953983 . - . ID=gene937;Name=RD04_RS04690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04690;old_locus_tag=RD04_04680;partial=true;pseudo=true;start_range=.,953468 NZ_CP010961.1 Protein Homology CDS 953468 953983 . - 0 ID=cds920;Parent=gene937;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=enoyl-CoA hydratase;pseudo=true;start_range=.,953468;transl_table=11 NZ_CP010961.1 RefSeq gene 953980 954948 . - . ID=gene938;Name=RD04_RS04695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04695;old_locus_tag=RD04_04685 NZ_CP010961.1 Protein Homology CDS 953980 954948 . - 0 ID=cds921;Parent=gene938;Dbxref=Genbank:WP_010929680.1;Name=WP_010929680.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929680.1;transl_table=11 NZ_CP010961.1 RefSeq gene 954977 956188 . - . ID=gene939;Name=RD04_RS04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04700;old_locus_tag=RD04_04690 NZ_CP010961.1 Protein Homology CDS 954977 956188 . - 0 ID=cds922;Parent=gene939;Dbxref=Genbank:WP_010929679.1;Name=WP_010929679.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010929679.1;transl_table=11 NZ_CP010961.1 RefSeq gene 956258 956998 . + . ID=gene940;Name=RD04_RS04705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04705;old_locus_tag=RD04_04695 NZ_CP010961.1 Protein Homology CDS 956258 956998 . + 0 ID=cds923;Parent=gene940;Dbxref=Genbank:WP_010929678.1;Name=WP_010929678.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010929678.1;transl_table=11 NZ_CP010961.1 RefSeq gene 957143 960007 . - . ID=gene941;Name=RD04_RS04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04710;old_locus_tag=RD04_04700 NZ_CP010961.1 Protein Homology CDS 957143 960007 . - 0 ID=cds924;Parent=gene941;Dbxref=Genbank:WP_010929677.1;Name=WP_010929677.1;Note=acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine;gbkey=CDS;product=glycine dehydrogenase;protein_id=WP_010929677.1;transl_table=11 NZ_CP010961.1 RefSeq gene 960067 960441 . - . ID=gene942;Name=RD04_RS04715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04715;old_locus_tag=RD04_04705 NZ_CP010961.1 Protein Homology CDS 960067 960441 . - 0 ID=cds925;Parent=gene942;Dbxref=Genbank:WP_010929676.1;Name=WP_010929676.1;gbkey=CDS;product=glycine cleavage system protein H;protein_id=WP_010929676.1;transl_table=11 NZ_CP010961.1 RefSeq gene 960523 961623 . - . ID=gene943;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=RD04_RS04720;old_locus_tag=RD04_04710 NZ_CP010961.1 Protein Homology CDS 960523 961623 . - 0 ID=cds926;Parent=gene943;Dbxref=Genbank:WP_010929675.1;Name=WP_010929675.1;Note=catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate%2C causing the release of ammonia and the generation of reduced GcvH protein;gbkey=CDS;gene=gcvT;product=aminomethyltransferase;protein_id=WP_010929675.1;transl_table=11 NZ_CP010961.1 cmsearch binding_site 961704 961823 . - . ID=id20;Dbxref=RFAM:RF00504;Note=glycine riboswitch;gbkey=misc_binding NZ_CP010961.1 cmsearch binding_site 961845 961937 . - . ID=id21;Dbxref=RFAM:RF00504;Note=glycine riboswitch;gbkey=misc_binding NZ_CP010961.1 RefSeq gene 962018 962911 . - . ID=gene944;Name=RD04_RS04725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04725;old_locus_tag=RD04_04715 NZ_CP010961.1 Protein Homology CDS 962018 962911 . - 0 ID=cds927;Parent=gene944;Dbxref=Genbank:WP_010929674.1;Name=WP_010929674.1;gbkey=CDS;product=ZIP family metal transporter;protein_id=WP_010929674.1;transl_table=11 NZ_CP010961.1 RefSeq gene 962908 963543 . - . ID=gene945;Name=RD04_RS04730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04730;old_locus_tag=RD04_04720 NZ_CP010961.1 Protein Homology CDS 962908 963543 . - 0 ID=cds928;Parent=gene945;Dbxref=Genbank:WP_010929673.1;Name=WP_010929673.1;Note=SodA%3B manganese binding%3B only present under aerobic conditions%3B destroys free radicals;gbkey=CDS;product=superoxide dismutase [Mn];protein_id=WP_010929673.1;transl_table=11 NZ_CP010961.1 RefSeq gene 963650 964597 . - . ID=gene946;Name=RD04_RS04735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04735;old_locus_tag=RD04_04725;partial=true;pseudo=true;start_range=.,963650 NZ_CP010961.1 Protein Homology CDS 963650 964597 . - 0 ID=cds929;Parent=gene946;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=integrase;pseudo=true;start_range=.,963650;transl_table=11 NZ_CP010961.1 RefSeq gene 964696 965070 . - . ID=gene947;Name=RD04_RS04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04740;old_locus_tag=RD04_04730 NZ_CP010961.1 Protein Homology CDS 964696 965070 . - 0 ID=cds930;Parent=gene947;Dbxref=Genbank:WP_010931081.1;Name=WP_010931081.1;gbkey=CDS;product=endonuclease;protein_id=WP_010931081.1;transl_table=11 NZ_CP010961.1 RefSeq gene 965156 965529 . + . ID=gene948;Name=RD04_RS04745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04745;old_locus_tag=RD04_04735;pseudo=true NZ_CP010961.1 Protein Homology CDS 965156 965529 . + 0 ID=cds931;Parent=gene948;Note=frameshifted;gbkey=CDS;product=RNA-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 965646 967582 . + . ID=gene949;Name=RD04_RS04750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04750;old_locus_tag=RD04_04740;pseudo=true NZ_CP010961.1 Protein Homology CDS 965646 967582 . + 0 ID=cds932;Parent=gene949;Note=frameshifted;gbkey=CDS;product=alkaline phosphatase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 967695 967922 . - . ID=gene950;Name=RD04_RS04755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04755;old_locus_tag=RD04_04745 NZ_CP010961.1 Protein Homology CDS 967695 967922 . - 0 ID=cds933;Parent=gene950;Dbxref=Genbank:WP_019247680.1;Name=WP_019247680.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247680.1;transl_table=11 NZ_CP010961.1 RefSeq gene 968183 969064 . - . ID=gene951;Name=RD04_RS04760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04760;old_locus_tag=RD04_04750 NZ_CP010961.1 Protein Homology CDS 968183 969064 . - 0 ID=cds934;Parent=gene951;Dbxref=Genbank:WP_003811986.1;Name=WP_003811986.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003811986.1;transl_table=11 NZ_CP010961.1 RefSeq gene 969172 970800 . + . ID=gene952;Name=RD04_RS04765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04765;old_locus_tag=RD04_04755 NZ_CP010961.1 Protein Homology CDS 969172 970800 . + 0 ID=cds935;Parent=gene952;Dbxref=Genbank:WP_010931080.1;Name=WP_010931080.1;gbkey=CDS;product=gamma-glutamyltranspeptidase;protein_id=WP_010931080.1;transl_table=11 NZ_CP010961.1 RefSeq gene 970842 972359 . + . ID=gene953;Name=RD04_RS04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04770;old_locus_tag=RD04_04760 NZ_CP010961.1 Protein Homology CDS 970842 972359 . + 0 ID=cds936;Parent=gene953;Dbxref=Genbank:WP_010931079.1;Name=WP_010931079.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931079.1;transl_table=11 NZ_CP010961.1 RefSeq gene 972454 973398 . + . ID=gene954;Name=RD04_RS04775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04775;old_locus_tag=RD04_04765 NZ_CP010961.1 Protein Homology CDS 972454 973398 . + 0 ID=cds937;Parent=gene954;Dbxref=Genbank:WP_019247679.1;Name=WP_019247679.1;gbkey=CDS;product=glutathione ABC transporter permease;protein_id=WP_019247679.1;transl_table=11 NZ_CP010961.1 RefSeq gene 973395 974090 . + . ID=gene955;Name=RD04_RS04780;end_range=974090,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04780;old_locus_tag=RD04_04770;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 973395 974090 . + 0 ID=cds938;Parent=gene955;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=974090,.;gbkey=CDS;partial=true;product=diguanylate cyclase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 974580 975482 . - . ID=gene956;Name=RD04_RS04785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04785;old_locus_tag=RD04_04775 NZ_CP010961.1 Protein Homology CDS 974580 975482 . - 0 ID=cds939;Parent=gene956;Dbxref=Genbank:WP_003813309.1;Name=WP_003813309.1;gbkey=CDS;product=ribosome biogenesis GTPase;protein_id=WP_003813309.1;transl_table=11 NZ_CP010961.1 RefSeq gene 975479 976744 . - . ID=gene957;Name=RD04_RS04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04790;old_locus_tag=RD04_04780 NZ_CP010961.1 Protein Homology CDS 975479 976744 . - 0 ID=cds940;Parent=gene957;Dbxref=Genbank:WP_003813306.1;Name=WP_003813306.1;gbkey=CDS;product=peptidase M48;protein_id=WP_003813306.1;transl_table=11 NZ_CP010961.1 RefSeq gene 976789 977334 . + . ID=gene958;Name=RD04_RS04795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04795;old_locus_tag=RD04_04785 NZ_CP010961.1 Protein Homology CDS 976789 977334 . + 0 ID=cds941;Parent=gene958;Dbxref=Genbank:WP_003813303.1;Name=WP_003813303.1;gbkey=CDS;product=oligoribonuclease;protein_id=WP_003813303.1;transl_table=11 NZ_CP010961.1 RefSeq gene 977368 978054 . + . ID=gene959;Name=RD04_RS04800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04800;old_locus_tag=RD04_04790 NZ_CP010961.1 Protein Homology CDS 977368 978054 . + 0 ID=cds942;Parent=gene959;Dbxref=Genbank:WP_003813302.1;Name=WP_003813302.1;gbkey=CDS;product=NAD(P)H-hydrate epimerase;protein_id=WP_003813302.1;transl_table=11 NZ_CP010961.1 RefSeq gene 978026 978955 . - . ID=gene960;Name=RD04_RS04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04805;old_locus_tag=RD04_04795 NZ_CP010961.1 Protein Homology CDS 978026 978955 . - 0 ID=cds943;Parent=gene960;Dbxref=Genbank:WP_010931077.1;Name=WP_010931077.1;gbkey=CDS;product=phenylacetic acid degradation operon negative regulatory protein;protein_id=WP_010931077.1;transl_table=11 NZ_CP010961.1 RefSeq gene 979127 980116 . + . ID=gene961;Name=RD04_RS04810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04810;old_locus_tag=RD04_04800 NZ_CP010961.1 Protein Homology CDS 979127 980116 . + 0 ID=cds944;Parent=gene961;Dbxref=Genbank:WP_003813298.1;Name=WP_003813298.1;gbkey=CDS;product=phenylacetic acid degradation protein;protein_id=WP_003813298.1;transl_table=11 NZ_CP010961.1 RefSeq gene 980181 980465 . + . ID=gene962;Name=paaB;gbkey=Gene;gene=paaB;gene_biotype=protein_coding;locus_tag=RD04_RS04815;old_locus_tag=RD04_04805 NZ_CP010961.1 Protein Homology CDS 980181 980465 . + 0 ID=cds945;Parent=gene962;Dbxref=Genbank:WP_010931076.1;Name=WP_010931076.1;Note=with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA%3B involved in phenylacetate degradation;gbkey=CDS;gene=paaB;product=phenylacetate-CoA oxygenase subunit PaaB;protein_id=WP_010931076.1;transl_table=11 NZ_CP010961.1 RefSeq gene 980481 981245 . + . ID=gene963;Name=RD04_RS04820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04820;old_locus_tag=RD04_04810 NZ_CP010961.1 Protein Homology CDS 980481 981245 . + 0 ID=cds946;Parent=gene963;Dbxref=Genbank:WP_003813293.1;Name=WP_003813293.1;gbkey=CDS;product=phenylacetic acid degradation protein;protein_id=WP_003813293.1;transl_table=11 NZ_CP010961.1 RefSeq gene 981242 981748 . + . ID=gene964;Name=RD04_RS04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04825;old_locus_tag=RD04_04815 NZ_CP010961.1 Protein Homology CDS 981242 981748 . + 0 ID=cds947;Parent=gene964;Dbxref=Genbank:WP_010931075.1;Name=WP_010931075.1;gbkey=CDS;product=phenylacetate-CoA oxygenase subunit PaaJ;protein_id=WP_010931075.1;transl_table=11 NZ_CP010961.1 RefSeq gene 981760 982812 . + . ID=gene965;Name=RD04_RS04830;end_range=982812,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04830;old_locus_tag=RD04_04820;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 981760 982812 . + 0 ID=cds948;Parent=gene965;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=982812,.;gbkey=CDS;partial=true;product=phenylacetic acid degradation protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 982958 983860 . + . ID=gene966;Name=RD04_RS04835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04835;old_locus_tag=RD04_04825 NZ_CP010961.1 GeneMarkS+ CDS 982958 983860 . + 0 ID=cds949;Parent=gene966;Dbxref=Genbank:WP_039250121.1;Name=WP_039250121.1;gbkey=CDS;product=integrase;protein_id=WP_039250121.1;transl_table=11 NZ_CP010961.1 RefSeq gene 983948 985600 . + . ID=gene967;Name=RD04_RS04840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04840;old_locus_tag=RD04_04830 NZ_CP010961.1 Protein Homology CDS 983948 985600 . + 0 ID=cds950;Parent=gene967;Dbxref=Genbank:WP_010931074.1;Name=WP_010931074.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010931074.1;transl_table=11 NZ_CP010961.1 RefSeq gene 985611 986399 . + . ID=gene968;Name=RD04_RS04845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04845;old_locus_tag=RD04_04835 NZ_CP010961.1 Protein Homology CDS 985611 986399 . + 0 ID=cds951;Parent=gene968;Dbxref=Genbank:WP_010931073.1;Name=WP_010931073.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=2-(1%2C2-epoxy-1%2C2-dihydrophenyl)acetyl-CoA isomerase;protein_id=WP_010931073.1;transl_table=11 NZ_CP010961.1 RefSeq gene 986399 986869 . + . ID=gene969;Name=RD04_RS04850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04850;old_locus_tag=RD04_04840 NZ_CP010961.1 Protein Homology CDS 986399 986869 . + 0 ID=cds952;Parent=gene969;Dbxref=Genbank:WP_003813284.1;Name=WP_003813284.1;gbkey=CDS;product=phenylacetic acid degradation protein PaaD;protein_id=WP_003813284.1;transl_table=11 NZ_CP010961.1 RefSeq gene 986944 988257 . + . ID=gene970;Name=RD04_RS04855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04855;old_locus_tag=RD04_04845 NZ_CP010961.1 Protein Homology CDS 986944 988257 . + 0 ID=cds953;Parent=gene970;Dbxref=Genbank:WP_010931072.1;Name=WP_010931072.1;gbkey=CDS;product=phenylacetate-CoA ligase;protein_id=WP_010931072.1;transl_table=11 NZ_CP010961.1 RefSeq gene 988311 988916 . - . ID=gene971;Name=RD04_RS04860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04860;old_locus_tag=RD04_04850 NZ_CP010961.1 Protein Homology CDS 988311 988916 . - 0 ID=cds954;Parent=gene971;Dbxref=Genbank:WP_010931071.1;Name=WP_010931071.1;gbkey=CDS;product=fimbrial protein FimX;protein_id=WP_010931071.1;transl_table=11 NZ_CP010961.1 RefSeq gene 989233 990183 . + . ID=gene972;Name=RD04_RS04865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04865;old_locus_tag=RD04_04855 NZ_CP010961.1 Protein Homology CDS 989233 990183 . + 0 ID=cds955;Parent=gene972;Dbxref=Genbank:WP_010927663.1;Name=WP_010927663.1;gbkey=CDS;product=transposase;protein_id=WP_010927663.1;transl_table=11 NZ_CP010961.1 RefSeq gene 990180 991082 . - . ID=gene973;Name=RD04_RS04870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04870;old_locus_tag=RD04_04860 NZ_CP010961.1 GeneMarkS+ CDS 990180 991082 . - 0 ID=cds956;Parent=gene973;Dbxref=Genbank:WP_039250367.1;Name=WP_039250367.1;gbkey=CDS;product=integrase;protein_id=WP_039250367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 991391 992419 . - . ID=gene974;Name=RD04_RS04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04875;old_locus_tag=RD04_04865 NZ_CP010961.1 Protein Homology CDS 991391 992419 . - 0 ID=cds957;Parent=gene974;Dbxref=Genbank:WP_010931069.1;Name=WP_010931069.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_010931069.1;transl_table=11 NZ_CP010961.1 RefSeq gene 992499 993797 . - . ID=gene975;Name=RD04_RS04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04880;old_locus_tag=RD04_04870 NZ_CP010961.1 Protein Homology CDS 992499 993797 . - 0 ID=cds958;Parent=gene975;Dbxref=Genbank:WP_010931068.1;Name=WP_010931068.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_010931068.1;transl_table=11 NZ_CP010961.1 RefSeq gene 993794 994330 . - . ID=gene976;Name=RD04_RS04885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04885;old_locus_tag=RD04_04875 NZ_CP010961.1 Protein Homology CDS 993794 994330 . - 0 ID=cds959;Parent=gene976;Dbxref=Genbank:WP_023853219.1;Name=WP_023853219.1;gbkey=CDS;product=TRAP ABC transporter substrate-binding protein;protein_id=WP_023853219.1;transl_table=11 NZ_CP010961.1 RefSeq gene 994688 998734 . + . ID=gene977;Name=RD04_RS04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04890;old_locus_tag=RD04_04880 NZ_CP010961.1 Protein Homology CDS 994688 998734 . + 0 ID=cds960;Parent=gene977;Dbxref=Genbank:WP_010931067.1;Name=WP_010931067.1;gbkey=CDS;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_010931067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 998975 1006635 . + . ID=gene978;Name=RD04_RS04895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04895;old_locus_tag=RD04_04885;pseudo=true NZ_CP010961.1 Protein Homology CDS 998975 1006635 . + 0 ID=cds961;Parent=gene978;Note=frameshifted;gbkey=CDS;product=adhesin;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1006632 1007582 . - . ID=gene979;Name=RD04_RS04900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04900;old_locus_tag=RD04_04890 NZ_CP010961.1 Protein Homology CDS 1006632 1007582 . - 0 ID=cds962;Parent=gene979;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1007688 1008725 . - . ID=gene980;Name=RD04_RS04905;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04905;old_locus_tag=RD04_04895;partial=true;pseudo=true;start_range=.,1007688 NZ_CP010961.1 Protein Homology CDS 1007688 1008725 . - 0 ID=cds963;Parent=gene980;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=fusaric acid resistance protein;pseudo=true;start_range=.,1007688;transl_table=11 NZ_CP010961.1 RefSeq gene 1008722 1009195 . - . ID=gene981;Name=RD04_RS04910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04910;old_locus_tag=RD04_04900 NZ_CP010961.1 Protein Homology CDS 1008722 1009195 . - 0 ID=cds964;Parent=gene981;Dbxref=Genbank:WP_010931065.1;Name=WP_010931065.1;gbkey=CDS;product=MarR family transcriptional regulator;protein_id=WP_010931065.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1009335 1009955 . - . ID=gene982;Name=RD04_RS04915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04915;old_locus_tag=RD04_04905 NZ_CP010961.1 Protein Homology CDS 1009335 1009955 . - 0 ID=cds965;Parent=gene982;Dbxref=Genbank:WP_010931064.1;Name=WP_010931064.1;gbkey=CDS;product=XRE family transcriptional regulator;protein_id=WP_010931064.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1010103 1010891 . + . ID=gene983;Name=RD04_RS04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04920;old_locus_tag=RD04_04910 NZ_CP010961.1 Protein Homology CDS 1010103 1010891 . + 0 ID=cds966;Parent=gene983;Dbxref=Genbank:WP_033446294.1;Name=WP_033446294.1;gbkey=CDS;product=class II aldolase;protein_id=WP_033446294.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1010946 1012037 . + . ID=gene984;Name=RD04_RS04925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04925;old_locus_tag=RD04_04915 NZ_CP010961.1 Protein Homology CDS 1010946 1012037 . + 0 ID=cds967;Parent=gene984;Dbxref=Genbank:WP_003810897.1;Name=WP_003810897.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003810897.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1012059 1012502 . - . ID=gene985;Name=RD04_RS04930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04930;old_locus_tag=RD04_04920 NZ_CP010961.1 Protein Homology CDS 1012059 1012502 . - 0 ID=cds968;Parent=gene985;Dbxref=Genbank:WP_010931062.1;Name=WP_010931062.1;gbkey=CDS;product=6-carboxy-5%2C6%2C7%2C8-tetrahydropterin synthase;protein_id=WP_010931062.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1012531 1013163 . - . ID=gene986;Name=RD04_RS04935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04935;old_locus_tag=RD04_04925 NZ_CP010961.1 Protein Homology CDS 1012531 1013163 . - 0 ID=cds969;Parent=gene986;Dbxref=Genbank:WP_010931061.1;Name=WP_010931061.1;gbkey=CDS;product=7-carboxy-7-deazaguanine synthase;protein_id=WP_010931061.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1013274 1013690 . + . ID=gene987;Name=RD04_RS04940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04940;old_locus_tag=RD04_04930 NZ_CP010961.1 Protein Homology CDS 1013274 1013690 . + 0 ID=cds970;Parent=gene987;Dbxref=Genbank:WP_003810909.1;Name=WP_003810909.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003810909.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1013683 1014375 . + . ID=gene988;Name=RD04_RS04945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04945;old_locus_tag=RD04_04935 NZ_CP010961.1 Protein Homology CDS 1013683 1014375 . + 0 ID=cds971;Parent=gene988;Dbxref=Genbank:WP_010931060.1;Name=WP_010931060.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931060.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1014482 1014856 . + . ID=gene989;Name=RD04_RS04950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04950;old_locus_tag=RD04_04940 NZ_CP010961.1 Protein Homology CDS 1014482 1014856 . + 0 ID=cds972;Parent=gene989;Dbxref=Genbank:WP_010931059.1;Name=WP_010931059.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931059.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1014933 1015619 . - . ID=gene990;Name=RD04_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04955;old_locus_tag=RD04_04945 NZ_CP010961.1 Protein Homology CDS 1014933 1015619 . - 0 ID=cds973;Parent=gene990;Dbxref=Genbank:WP_033446276.1;Name=WP_033446276.1;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_033446276.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1015838 1016782 . + . ID=gene991;Name=RD04_RS04960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04960;old_locus_tag=RD04_04950 NZ_CP010961.1 Protein Homology CDS 1015838 1016782 . + 0 ID=cds974;Parent=gene991;Dbxref=Genbank:WP_010931057.1;Name=WP_010931057.1;gbkey=CDS;product=dihydrodipicolinate synthase family protein;protein_id=WP_010931057.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1016830 1017792 . + . ID=gene992;Name=RD04_RS04965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04965;old_locus_tag=RD04_04955 NZ_CP010961.1 Protein Homology CDS 1016830 1017792 . + 0 ID=cds975;Parent=gene992;Dbxref=Genbank:WP_020699611.1;Name=WP_020699611.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_020699611.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1017883 1018320 . - . ID=gene993;Name=RD04_RS04970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04970;old_locus_tag=RD04_04960 NZ_CP010961.1 Protein Homology CDS 1017883 1018320 . - 0 ID=cds976;Parent=gene993;Dbxref=Genbank:WP_003810921.1;Name=WP_003810921.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003810921.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1018379 1019182 . - . ID=gene994;Name=RD04_RS04975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04975;old_locus_tag=RD04_04965 NZ_CP010961.1 Protein Homology CDS 1018379 1019182 . - 0 ID=cds977;Parent=gene994;Dbxref=Genbank:WP_010931055.1;Name=WP_010931055.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931055.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1019342 1020014 . + . ID=gene995;Name=RD04_RS04980;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS04980;old_locus_tag=RD04_04970;pseudo=true NZ_CP010961.1 Protein Homology CDS 1019342 1020014 . + 0 ID=cds978;Parent=gene995;Note=frameshifted;gbkey=CDS;product=dimethylallyltransferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1020264 1021124 . + . ID=gene996;Name=RD04_RS04985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04985;old_locus_tag=RD04_04975 NZ_CP010961.1 Protein Homology CDS 1020264 1021124 . + 0 ID=cds979;Parent=gene996;Dbxref=Genbank:WP_010931054.1;Name=WP_010931054.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931054.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1021157 1022539 . + . ID=gene997;Name=RD04_RS04990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04990;old_locus_tag=RD04_04980 NZ_CP010961.1 Protein Homology CDS 1021157 1022539 . + 0 ID=cds980;Parent=gene997;Dbxref=Genbank:WP_010931053.1;Name=WP_010931053.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931053.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1022536 1023555 . + . ID=gene998;Name=RD04_RS04995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS04995;old_locus_tag=RD04_04985 NZ_CP010961.1 Protein Homology CDS 1022536 1023555 . + 0 ID=cds981;Parent=gene998;Dbxref=Genbank:WP_010931052.1;Name=WP_010931052.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931052.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1023928 1024422 . + . ID=gene999;Name=RD04_RS05000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05000;old_locus_tag=RD04_04990 NZ_CP010961.1 Protein Homology CDS 1023928 1024422 . + 0 ID=cds982;Parent=gene999;Dbxref=Genbank:WP_019247407.1;Name=WP_019247407.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247407.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1024430 1025170 . - . ID=gene1000;Name=RD04_RS05005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05005;old_locus_tag=RD04_04995 NZ_CP010961.1 Protein Homology CDS 1024430 1025170 . - 0 ID=cds983;Parent=gene1000;Dbxref=Genbank:WP_010931051.1;Name=WP_010931051.1;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_010931051.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1025251 1026855 . - . ID=gene1001;Name=RD04_RS05010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05010;old_locus_tag=RD04_05000 NZ_CP010961.1 Protein Homology CDS 1025251 1026855 . - 0 ID=cds984;Parent=gene1001;Dbxref=Genbank:WP_010931050.1;Name=WP_010931050.1;gbkey=CDS;product=glycerol-3-phosphate dehydrogenase;protein_id=WP_010931050.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1026895 1027683 . - . ID=gene1002;Name=RD04_RS05015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05015;old_locus_tag=RD04_05005 NZ_CP010961.1 Protein Homology CDS 1026895 1027683 . - 0 ID=cds985;Parent=gene1002;Dbxref=Genbank:WP_010931049.1;Name=WP_010931049.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_010931049.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1027809 1028879 . + . ID=gene1003;Name=RD04_RS05020;end_range=1028879,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05020;old_locus_tag=RD04_05010;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 1027809 1028879 . + 0 ID=cds986;Parent=gene1003;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=1028879,.;gbkey=CDS;partial=true;product=ABC transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1028886 1029974 . + . ID=gene1004;Name=RD04_RS05025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05025;old_locus_tag=RD04_05015 NZ_CP010961.1 Protein Homology CDS 1028886 1029974 . + 0 ID=cds987;Parent=gene1004;Dbxref=Genbank:WP_010931048.1;Name=WP_010931048.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931048.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1029971 1030862 . + . ID=gene1005;Name=RD04_RS05030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05030;old_locus_tag=RD04_05020;pseudo=true NZ_CP010961.1 Protein Homology CDS 1029971 1030862 . + 0 ID=cds988;Parent=gene1005;Note=frameshifted;gbkey=CDS;product=ABC transporter permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1030855 1031667 . + . ID=gene1006;Name=RD04_RS05035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05035;old_locus_tag=RD04_05025 NZ_CP010961.1 Protein Homology CDS 1030855 1031667 . + 0 ID=cds989;Parent=gene1006;Dbxref=Genbank:WP_010931047.1;Name=WP_010931047.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931047.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1031680 1031988 . + . ID=gene1007;Name=RD04_RS05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05040;old_locus_tag=RD04_05030 NZ_CP010961.1 Protein Homology CDS 1031680 1031988 . + 0 ID=cds990;Parent=gene1007;Dbxref=Genbank:WP_004568502.1;Name=WP_004568502.1;gbkey=CDS;product=membrane protein;protein_id=WP_004568502.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1032106 1033836 . + . ID=gene1008;Name=RD04_RS05045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05045;old_locus_tag=RD04_05035 NZ_CP010961.1 Protein Homology CDS 1032106 1033836 . + 0 ID=cds991;Parent=gene1008;Dbxref=Genbank:WP_010931046.1;Name=WP_010931046.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931046.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1033838 1034983 . - . ID=gene1009;Name=RD04_RS05050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05050;old_locus_tag=RD04_05040 NZ_CP010961.1 Protein Homology CDS 1033838 1034983 . - 0 ID=cds992;Parent=gene1009;Dbxref=Genbank:WP_019249399.1;Name=WP_019249399.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019249399.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1035144 1035779 . - . ID=gene1010;Name=RD04_RS05055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05055;old_locus_tag=RD04_05045;partial=true;pseudo=true;start_range=.,1035144 NZ_CP010961.1 Protein Homology CDS 1035144 1035779 . - 0 ID=cds993;Parent=gene1010;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1035144;transl_table=11 NZ_CP010961.1 RefSeq gene 1035901 1036368 . - . ID=gene1011;Name=RD04_RS05060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05060;old_locus_tag=RD04_05050 NZ_CP010961.1 Protein Homology CDS 1035901 1036368 . - 0 ID=cds994;Parent=gene1011;Dbxref=Genbank:WP_003810957.1;Name=WP_003810957.1;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_003810957.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1036504 1037886 . + . ID=gene1012;Name=RD04_RS05065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05065;old_locus_tag=RD04_05055 NZ_CP010961.1 Protein Homology CDS 1036504 1037886 . + 0 ID=cds995;Parent=gene1012;Dbxref=Genbank:WP_024001253.1;Name=WP_024001253.1;Note=catalyzes the oxidative deamination of D-amino acids;gbkey=CDS;product=D-amino acid dehydrogenase small subunit;protein_id=WP_024001253.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1037883 1039007 . + . ID=gene1013;Name=RD04_RS05070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05070;old_locus_tag=RD04_05060 NZ_CP010961.1 Protein Homology CDS 1037883 1039007 . + 0 ID=cds996;Parent=gene1013;Dbxref=Genbank:WP_014486086.1;Name=WP_014486086.1;gbkey=CDS;product=metallophosphatase;protein_id=WP_014486086.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1039004 1041640 . + . ID=gene1014;Name=RD04_RS05075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05075;old_locus_tag=RD04_05065 NZ_CP010961.1 Protein Homology CDS 1039004 1041640 . + 0 ID=cds997;Parent=gene1014;Dbxref=Genbank:WP_010931042.1;Name=WP_010931042.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_010931042.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1041711 1041947 . - . ID=gene1015;Name=RD04_RS05080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05080;old_locus_tag=RD04_05070 NZ_CP010961.1 GeneMarkS+ CDS 1041711 1041947 . - 0 ID=cds998;Parent=gene1015;Dbxref=Genbank:WP_023998486.1;Name=WP_023998486.1;gbkey=CDS;product=tripartite tricarboxylate transporter family receptor domain protein;protein_id=WP_023998486.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1042104 1043006 . + . ID=gene1016;Name=RD04_RS05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05085;old_locus_tag=RD04_05075 NZ_CP010961.1 GeneMarkS+ CDS 1042104 1043006 . + 0 ID=cds999;Parent=gene1016;Dbxref=Genbank:WP_039250367.1;Name=WP_039250367.1;gbkey=CDS;product=integrase;protein_id=WP_039250367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1043192 1043461 . - . ID=gene1017;Name=RD04_RS05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05090;old_locus_tag=RD04_05080 NZ_CP010961.1 Protein Homology CDS 1043192 1043461 . - 0 ID=cds1000;Parent=gene1017;Dbxref=Genbank:WP_019247969.1;Name=WP_019247969.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247969.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1043700 1044338 . + . ID=gene1018;Name=RD04_RS05095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05095;old_locus_tag=RD04_05085 NZ_CP010961.1 Protein Homology CDS 1043700 1044338 . + 0 ID=cds1001;Parent=gene1018;Dbxref=Genbank:WP_019247971.1;Name=WP_019247971.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247971.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1044588 1045124 . + . ID=gene1019;Name=RD04_RS05100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05100;old_locus_tag=RD04_05090 NZ_CP010961.1 Protein Homology CDS 1044588 1045124 . + 0 ID=cds1002;Parent=gene1019;Dbxref=Genbank:WP_019247972.1;Name=WP_019247972.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247972.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1045143 1046756 . + . ID=gene1020;Name=RD04_RS05105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05105;old_locus_tag=RD04_05095 NZ_CP010961.1 Protein Homology CDS 1045143 1046756 . + 0 ID=cds1003;Parent=gene1020;Dbxref=Genbank:WP_019247973.1;Name=WP_019247973.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247973.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1046753 1047364 . - . ID=gene1021;Name=RD04_RS05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05110;old_locus_tag=RD04_05100 NZ_CP010961.1 Protein Homology CDS 1046753 1047364 . - 0 ID=cds1004;Parent=gene1021;Dbxref=Genbank:WP_010931041.1;Name=WP_010931041.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931041.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1047587 1049047 . + . ID=gene1022;Name=RD04_RS05115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05115;old_locus_tag=RD04_05105 NZ_CP010961.1 Protein Homology CDS 1047587 1049047 . + 0 ID=cds1005;Parent=gene1022;Dbxref=Genbank:WP_003812368.1;Name=WP_003812368.1;gbkey=CDS;product=IMP dehydrogenase;protein_id=WP_003812368.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1049144 1050736 . + . ID=gene1023;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=RD04_RS05120;old_locus_tag=RD04_05110 NZ_CP010961.1 Protein Homology CDS 1049144 1050736 . + 0 ID=cds1006;Parent=gene1023;Dbxref=Genbank:WP_010931040.1;Name=WP_010931040.1;Note=contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway;gbkey=CDS;gene=guaA;product=GMP synthetase;protein_id=WP_010931040.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1051090 1051347 . + . ID=gene1024;Name=RD04_RS05125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05125;old_locus_tag=RD04_05115 NZ_CP010961.1 Protein Homology CDS 1051090 1051347 . + 0 ID=cds1007;Parent=gene1024;Dbxref=Genbank:WP_019247974.1;Name=WP_019247974.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_019247974.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1051349 1052689 . + . ID=gene1025;Name=RD04_RS05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05130;old_locus_tag=RD04_05120 NZ_CP010961.1 Protein Homology CDS 1051349 1052689 . + 0 ID=cds1008;Parent=gene1025;Dbxref=Genbank:WP_003816876.1;Name=WP_003816876.1;gbkey=CDS;product=toxin HipA;protein_id=WP_003816876.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1052785 1053474 . - . ID=gene1026;Name=RD04_RS05135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05135;old_locus_tag=RD04_05125 NZ_CP010961.1 Protein Homology CDS 1052785 1053474 . - 0 ID=cds1009;Parent=gene1026;Dbxref=Genbank:WP_010931038.1;Name=WP_010931038.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_010931038.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1053487 1054917 . + . ID=gene1027;Name=RD04_RS05140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05140;old_locus_tag=RD04_05130 NZ_CP010961.1 Protein Homology CDS 1053487 1054917 . + 0 ID=cds1010;Parent=gene1027;Dbxref=Genbank:WP_019247976.1;Name=WP_019247976.1;gbkey=CDS;product=MFS transporter;protein_id=WP_019247976.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1055149 1056227 . + . ID=gene1028;Name=RD04_RS05145;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05145;old_locus_tag=RD04_05135;pseudo=true NZ_CP010961.1 Protein Homology CDS 1055149 1056227 . + 0 ID=cds1011;Parent=gene1028;Note=frameshifted;gbkey=CDS;product=C4-dicarboxylate ABC transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1056642 1057463 . + . ID=gene1029;Name=RD04_RS05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05150;old_locus_tag=RD04_05140 NZ_CP010961.1 Protein Homology CDS 1056642 1057463 . + 0 ID=cds1012;Parent=gene1029;Dbxref=Genbank:WP_014905903.1;Name=WP_014905903.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_014905903.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1057474 1059045 . + . ID=gene1030;Name=RD04_RS05155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05155;old_locus_tag=RD04_05145 NZ_CP010961.1 Protein Homology CDS 1057474 1059045 . + 0 ID=cds1013;Parent=gene1030;Dbxref=Genbank:WP_010931036.1;Name=WP_010931036.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931036.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1059074 1060051 . + . ID=gene1031;Name=RD04_RS05160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05160;old_locus_tag=RD04_05150 NZ_CP010961.1 Protein Homology CDS 1059074 1060051 . + 0 ID=cds1014;Parent=gene1031;Dbxref=Genbank:WP_010931035.1;Name=WP_010931035.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931035.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1060078 1060881 . + . ID=gene1032;Name=RD04_RS05165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05165;old_locus_tag=RD04_05155 NZ_CP010961.1 Protein Homology CDS 1060078 1060881 . + 0 ID=cds1015;Parent=gene1032;Dbxref=Genbank:WP_010931034.1;Name=WP_010931034.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931034.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1060878 1061672 . + . ID=gene1033;Name=RD04_RS05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05170;old_locus_tag=RD04_05160 NZ_CP010961.1 Protein Homology CDS 1060878 1061672 . + 0 ID=cds1016;Parent=gene1033;Dbxref=Genbank:WP_024001108.1;Name=WP_024001108.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_024001108.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1061680 1062915 . + . ID=gene1034;Name=RD04_RS05175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05175;old_locus_tag=RD04_05165 NZ_CP010961.1 Protein Homology CDS 1061680 1062915 . + 0 ID=cds1017;Parent=gene1034;Dbxref=Genbank:WP_003816890.1;Name=WP_003816890.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003816890.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1062929 1063342 . + . ID=gene1035;Name=RD04_RS05180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05180;old_locus_tag=RD04_05170 NZ_CP010961.1 Protein Homology CDS 1062929 1063342 . + 0 ID=cds1018;Parent=gene1035;Dbxref=Genbank:WP_019247978.1;Name=WP_019247978.1;gbkey=CDS;product=aconitase subunit 2;protein_id=WP_019247978.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1063400 1064554 . - . ID=gene1036;Name=RD04_RS05185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05185;old_locus_tag=RD04_05175;partial=true;pseudo=true;start_range=.,1063400 NZ_CP010961.1 Protein Homology CDS 1063400 1064554 . - 0 ID=cds1019;Parent=gene1036;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=transcriptional regulator;pseudo=true;start_range=.,1063400;transl_table=11 NZ_CP010961.1 RefSeq gene 1064615 1066342 . - . ID=gene1037;Name=RD04_RS05190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05190;old_locus_tag=RD04_05180 NZ_CP010961.1 Protein Homology CDS 1064615 1066342 . - 0 ID=cds1020;Parent=gene1037;Dbxref=Genbank:WP_010931031.1;Name=WP_010931031.1;gbkey=CDS;product=transporter;protein_id=WP_010931031.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1066454 1067812 . + . ID=gene1038;Name=RD04_RS05195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05195;old_locus_tag=RD04_05185 NZ_CP010961.1 Protein Homology CDS 1066454 1067812 . + 0 ID=cds1021;Parent=gene1038;Dbxref=Genbank:WP_010931030.1;Name=WP_010931030.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931030.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1068105 1069055 . + . ID=gene1039;Name=RD04_RS05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05200;old_locus_tag=RD04_05190 NZ_CP010961.1 Protein Homology CDS 1068105 1069055 . + 0 ID=cds1022;Parent=gene1039;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1069096 1070166 . + . ID=gene1040;Name=RD04_RS05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05205;old_locus_tag=RD04_05195 NZ_CP010961.1 Protein Homology CDS 1069096 1070166 . + 0 ID=cds1023;Parent=gene1040;Dbxref=Genbank:WP_010931029.1;Name=WP_010931029.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931029.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1070189 1071067 . - . ID=gene1041;Name=RD04_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05210;old_locus_tag=RD04_05200 NZ_CP010961.1 Protein Homology CDS 1070189 1071067 . - 0 ID=cds1024;Parent=gene1041;Dbxref=Genbank:WP_010931028.1;Name=WP_010931028.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931028.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1071239 1072210 . + . ID=gene1042;Name=RD04_RS05215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05215;old_locus_tag=RD04_05205 NZ_CP010961.1 Protein Homology CDS 1071239 1072210 . + 0 ID=cds1025;Parent=gene1042;Dbxref=Genbank:WP_010931027.1;Name=WP_010931027.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_010931027.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1072373 1073215 . - . ID=gene1043;Name=RD04_RS05220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05220;old_locus_tag=RD04_05210 NZ_CP010961.1 Protein Homology CDS 1072373 1073215 . - 0 ID=cds1026;Parent=gene1043;Dbxref=Genbank:WP_010931026.1;Name=WP_010931026.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931026.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1073377 1074057 . + . ID=gene1044;Name=RD04_RS05225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05225;old_locus_tag=RD04_05215 NZ_CP010961.1 Protein Homology CDS 1073377 1074057 . + 0 ID=cds1027;Parent=gene1044;Dbxref=Genbank:WP_010931025.1;Name=WP_010931025.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931025.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1074051 1075220 . + . ID=gene1045;Name=RD04_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05230;old_locus_tag=RD04_05220 NZ_CP010961.1 Protein Homology CDS 1074051 1075220 . + 0 ID=cds1028;Parent=gene1045;Dbxref=Genbank:WP_010931024.1;Name=WP_010931024.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931024.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1075217 1076248 . + . ID=gene1046;Name=RD04_RS05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05235;old_locus_tag=RD04_05225 NZ_CP010961.1 Protein Homology CDS 1075217 1076248 . + 0 ID=cds1029;Parent=gene1046;Dbxref=Genbank:WP_010931023.1;Name=WP_010931023.1;gbkey=CDS;product=alcohol dehydrogenase;protein_id=WP_010931023.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1076316 1077533 . + . ID=gene1047;Name=RD04_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05240;old_locus_tag=RD04_05230 NZ_CP010961.1 Protein Homology CDS 1076316 1077533 . + 0 ID=cds1030;Parent=gene1047;Dbxref=Genbank:WP_023853282.1;Name=WP_023853282.1;gbkey=CDS;product=transporter%2C major facilitator domain protein;protein_id=WP_023853282.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1077568 1079100 . - . ID=gene1048;Name=RD04_RS05245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05245;old_locus_tag=RD04_05235 NZ_CP010961.1 Protein Homology CDS 1077568 1079100 . - 0 ID=cds1031;Parent=gene1048;Dbxref=Genbank:WP_010931021.1;Name=WP_010931021.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010931021.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1079181 1079804 . + . ID=gene1049;Name=RD04_RS05250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05250;old_locus_tag=RD04_05240 NZ_CP010961.1 Protein Homology CDS 1079181 1079804 . + 0 ID=cds1032;Parent=gene1049;Dbxref=Genbank:WP_010931020.1;Name=WP_010931020.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010931020.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1079835 1080446 . + . ID=gene1050;Name=RD04_RS05255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05255;old_locus_tag=RD04_05245 NZ_CP010961.1 Protein Homology CDS 1079835 1080446 . + 0 ID=cds1033;Parent=gene1050;Dbxref=Genbank:WP_010931019.1;Name=WP_010931019.1;gbkey=CDS;product=transporter;protein_id=WP_010931019.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1080482 1080952 . + . ID=gene1051;Name=RD04_RS05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05260;old_locus_tag=RD04_05250 NZ_CP010961.1 Protein Homology CDS 1080482 1080952 . + 0 ID=cds1034;Parent=gene1051;Dbxref=Genbank:WP_010931018.1;Name=WP_010931018.1;gbkey=CDS;product=histidine kinase;protein_id=WP_010931018.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1081127 1081375 . + . ID=gene1052;Name=RD04_RS05265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05265;old_locus_tag=RD04_05255 NZ_CP010961.1 GeneMarkS+ CDS 1081127 1081375 . + 0 ID=cds1035;Parent=gene1052;Dbxref=Genbank:WP_019248146.1;Name=WP_019248146.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248146.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1081383 1082387 . + . ID=gene1053;Name=RD04_RS05270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05270;old_locus_tag=RD04_05260 NZ_CP010961.1 Protein Homology CDS 1081383 1082387 . + 0 ID=cds1036;Parent=gene1053;Dbxref=Genbank:WP_019248147.1;Name=WP_019248147.1;gbkey=CDS;product=peptidase M20;protein_id=WP_019248147.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1082424 1083938 . + . ID=gene1054;Name=RD04_RS05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05275;old_locus_tag=RD04_05265 NZ_CP010961.1 Protein Homology CDS 1082424 1083938 . + 0 ID=cds1037;Parent=gene1054;Dbxref=Genbank:WP_010931017.1;Name=WP_010931017.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931017.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1083942 1084901 . + . ID=gene1055;Name=RD04_RS05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05280;old_locus_tag=RD04_05270 NZ_CP010961.1 Protein Homology CDS 1083942 1084901 . + 0 ID=cds1038;Parent=gene1055;Dbxref=Genbank:WP_010931016.1;Name=WP_010931016.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931016.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1084930 1085733 . + . ID=gene1056;Name=RD04_RS05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05285;old_locus_tag=RD04_05275 NZ_CP010961.1 Protein Homology CDS 1084930 1085733 . + 0 ID=cds1039;Parent=gene1056;Dbxref=Genbank:WP_010931015.1;Name=WP_010931015.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931015.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1085735 1087369 . + . ID=gene1057;Name=RD04_RS05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05290;old_locus_tag=RD04_05280 NZ_CP010961.1 Protein Homology CDS 1085735 1087369 . + 0 ID=cds1040;Parent=gene1057;Dbxref=Genbank:WP_010931014.1;Name=WP_010931014.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931014.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1087453 1088514 . + . ID=gene1058;Name=RD04_RS05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05295;old_locus_tag=RD04_05285 NZ_CP010961.1 Protein Homology CDS 1087453 1088514 . + 0 ID=cds1041;Parent=gene1058;Dbxref=Genbank:WP_010931013.1;Name=WP_010931013.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_010931013.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1088986 1089510 . + . ID=gene1059;Name=RD04_RS05300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05300;old_locus_tag=RD04_05290 NZ_CP010961.1 Protein Homology CDS 1088986 1089510 . + 0 ID=cds1042;Parent=gene1059;Dbxref=Genbank:WP_010931012.1;Name=WP_010931012.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_010931012.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1089519 1089827 . - . ID=gene1060;Name=RD04_RS05305;end_range=1089827,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05305;old_locus_tag=RD04_05295;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 1089519 1089827 . - 0 ID=cds1043;Parent=gene1060;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=1089827,.;gbkey=CDS;partial=true;product=MerR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1089974 1090876 . + . ID=gene1061;Name=RD04_RS05310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05310;old_locus_tag=RD04_05300 NZ_CP010961.1 GeneMarkS+ CDS 1089974 1090876 . + 0 ID=cds1044;Parent=gene1061;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1090873 1091907 . - . ID=gene1062;Name=RD04_RS05315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05315;old_locus_tag=RD04_05305 NZ_CP010961.1 Protein Homology CDS 1090873 1091907 . - 0 ID=cds1045;Parent=gene1062;Dbxref=Genbank:WP_010931011.1;Name=WP_010931011.1;gbkey=CDS;product=hydrolase;protein_id=WP_010931011.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1092016 1092654 . + . ID=gene1063;Name=RD04_RS05320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05320;old_locus_tag=RD04_05310 NZ_CP010961.1 Protein Homology CDS 1092016 1092654 . + 0 ID=cds1046;Parent=gene1063;Dbxref=Genbank:WP_003816758.1;Name=WP_003816758.1;gbkey=CDS;product=membrane protein;protein_id=WP_003816758.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1092949 1093176 . + . ID=gene1064;Name=RD04_RS05325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05325;old_locus_tag=RD04_05315 NZ_CP010961.1 Protein Homology CDS 1092949 1093176 . + 0 ID=cds1047;Parent=gene1064;Dbxref=Genbank:WP_019247724.1;Name=WP_019247724.1;gbkey=CDS;product=GNAT family N-acetyltransferase;protein_id=WP_019247724.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1093299 1094012 . + . ID=gene1065;Name=RD04_RS05330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05330;old_locus_tag=RD04_05320 NZ_CP010961.1 Protein Homology CDS 1093299 1094012 . + 0 ID=cds1048;Parent=gene1065;Dbxref=Genbank:WP_003820420.1;Name=WP_003820420.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820420.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1094257 1095207 . - . ID=gene1066;Name=RD04_RS05335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05335;old_locus_tag=RD04_05325 NZ_CP010961.1 Protein Homology CDS 1094257 1095207 . - 0 ID=cds1049;Parent=gene1066;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1095347 1095592 . + . ID=gene1067;Name=RD04_RS05340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05340;old_locus_tag=RD04_05330 NZ_CP010961.1 Protein Homology CDS 1095347 1095592 . + 0 ID=cds1050;Parent=gene1067;Dbxref=Genbank:WP_023853496.1;Name=WP_023853496.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853496.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1095707 1097155 . - . ID=gene1068;Name=RD04_RS05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05345;old_locus_tag=RD04_05335 NZ_CP010961.1 Protein Homology CDS 1095707 1097155 . - 0 ID=cds1051;Parent=gene1068;Dbxref=Genbank:WP_010931008.1;Name=WP_010931008.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010931008.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1097314 1098216 . + . ID=gene1069;Name=RD04_RS05350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05350;old_locus_tag=RD04_05340 NZ_CP010961.1 GeneMarkS+ CDS 1097314 1098216 . + 0 ID=cds1052;Parent=gene1069;Dbxref=Genbank:WP_039250369.1;Name=WP_039250369.1;gbkey=CDS;product=integrase;protein_id=WP_039250369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1098213 1098662 . - . ID=gene1070;Name=RD04_RS05355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05355;old_locus_tag=RD04_05345 NZ_CP010961.1 Protein Homology CDS 1098213 1098662 . - 0 ID=cds1053;Parent=gene1070;Dbxref=Genbank:WP_003816756.1;Name=WP_003816756.1;Note=catalyzes the formation of dUMP from dUTP;gbkey=CDS;product=deoxyuridine 5'-triphosphate nucleotidohydrolase;protein_id=WP_003816756.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1098905 1099807 . + . ID=gene1071;Name=RD04_RS05360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05360;old_locus_tag=RD04_05350 NZ_CP010961.1 GeneMarkS+ CDS 1098905 1099807 . + 0 ID=cds1054;Parent=gene1071;Dbxref=Genbank:WP_039250369.1;Name=WP_039250369.1;gbkey=CDS;product=integrase;protein_id=WP_039250369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1100143 1100340 . + . ID=gene1072;Name=RD04_RS05365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05365;old_locus_tag=RD04_05355 NZ_CP010961.1 Protein Homology CDS 1100143 1100340 . + 0 ID=cds1055;Parent=gene1072;Dbxref=Genbank:WP_003812834.1;Name=WP_003812834.1;gbkey=CDS;product=50S ribosomal protein L35;protein_id=WP_003812834.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1100356 1100715 . + . ID=gene1073;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=RD04_RS05370;old_locus_tag=RD04_05360 NZ_CP010961.1 Protein Homology CDS 1100356 1100715 . + 0 ID=cds1056;Parent=gene1073;Dbxref=Genbank:WP_003812832.1;Name=WP_003812832.1;Note=binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit;gbkey=CDS;gene=rplT;product=50S ribosomal protein L20;protein_id=WP_003812832.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1100790 1101812 . + . ID=gene1074;Name=RD04_RS05375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05375;old_locus_tag=RD04_05365 NZ_CP010961.1 Protein Homology CDS 1100790 1101812 . + 0 ID=cds1057;Parent=gene1074;Dbxref=Genbank:WP_010926359.1;Name=WP_010926359.1;gbkey=CDS;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_010926359.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1101825 1104242 . + . ID=gene1075;Name=RD04_RS05380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05380;old_locus_tag=RD04_05370 NZ_CP010961.1 Protein Homology CDS 1101825 1104242 . + 0 ID=cds1058;Parent=gene1075;Dbxref=Genbank:WP_010931007.1;Name=WP_010931007.1;gbkey=CDS;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_010931007.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1104260 1104589 . + . ID=gene1076;Name=RD04_RS05385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05385;old_locus_tag=RD04_05375 NZ_CP010961.1 Protein Homology CDS 1104260 1104589 . + 0 ID=cds1059;Parent=gene1076;Dbxref=Genbank:WP_023852697.1;Name=WP_023852697.1;gbkey=CDS;product=integration host factor subunit alpha;protein_id=WP_023852697.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1104648 1105058 . + . ID=gene1077;Name=RD04_RS05390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05390;old_locus_tag=RD04_05380 NZ_CP010961.1 Protein Homology CDS 1104648 1105058 . + 0 ID=cds1060;Parent=gene1077;Dbxref=Genbank:WP_003812822.1;Name=WP_003812822.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003812822.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1105231 1105307 . + . ID=gene1078;Name=RD04_RS05395;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS05395;old_locus_tag=RD04_05385 NZ_CP010961.1 tRNAscan-SE tRNA 1105231 1105307 . + . ID=rna17;Parent=gene1078;anticodon=(pos:1105265..1105267);gbkey=tRNA;product=tRNA-Pro NZ_CP010961.1 tRNAscan-SE exon 1105231 1105307 . + . ID=id22;Parent=rna17;anticodon=(pos:1105265..1105267);gbkey=tRNA;product=tRNA-Pro NZ_CP010961.1 RefSeq gene 1105558 1106649 . - . ID=gene1079;Name=RD04_RS05400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05400;old_locus_tag=RD04_05390 NZ_CP010961.1 Protein Homology CDS 1105558 1106649 . - 0 ID=cds1061;Parent=gene1079;Dbxref=Genbank:WP_010931005.1;Name=WP_010931005.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931005.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1106836 1107429 . + . ID=gene1080;Name=RD04_RS05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05405;old_locus_tag=RD04_05395 NZ_CP010961.1 Protein Homology CDS 1106836 1107429 . + 0 ID=cds1062;Parent=gene1080;Dbxref=Genbank:WP_033446296.1;Name=WP_033446296.1;gbkey=CDS;product=twin-arginine translocation pathway signal;protein_id=WP_033446296.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1107529 1107711 . - . ID=gene1081;Name=RD04_RS05410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05410;old_locus_tag=RD04_05400 NZ_CP010961.1 Protein Homology CDS 1107529 1107711 . - 0 ID=cds1063;Parent=gene1081;Dbxref=Genbank:WP_004567479.1;Name=WP_004567479.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004567479.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1107870 1108772 . + . ID=gene1082;Name=RD04_RS05415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05415;old_locus_tag=RD04_05405 NZ_CP010961.1 GeneMarkS+ CDS 1107870 1108772 . + 0 ID=cds1064;Parent=gene1082;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1108900 1109247 . - . ID=gene1083;Name=RD04_RS05420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05420;old_locus_tag=RD04_05410 NZ_CP010961.1 GeneMarkS+ CDS 1108900 1109247 . - 0 ID=cds1065;Parent=gene1083;Dbxref=Genbank:WP_029443748.1;Name=WP_029443748.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_029443748.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1109284 1109360 . + . ID=gene1084;Name=RD04_RS05425;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS05425;old_locus_tag=RD04_05415 NZ_CP010961.1 tRNAscan-SE tRNA 1109284 1109360 . + . ID=rna18;Parent=gene1084;anticodon=(pos:1109318..1109320);gbkey=tRNA;product=tRNA-Met NZ_CP010961.1 tRNAscan-SE exon 1109284 1109360 . + . ID=id23;Parent=rna18;anticodon=(pos:1109318..1109320);gbkey=tRNA;product=tRNA-Met NZ_CP010961.1 RefSeq gene 1109510 1109842 . + . ID=gene1085;Name=RD04_RS05430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05430;old_locus_tag=RD04_05420 NZ_CP010961.1 Protein Homology CDS 1109510 1109842 . + 0 ID=cds1066;Parent=gene1085;Dbxref=Genbank:WP_023853503.1;Name=WP_023853503.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853503.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1109984 1110757 . - . ID=gene1086;Name=RD04_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05435;old_locus_tag=RD04_05425 NZ_CP010961.1 Protein Homology CDS 1109984 1110757 . - 0 ID=cds1067;Parent=gene1086;Dbxref=Genbank:WP_010931002.1;Name=WP_010931002.1;gbkey=CDS;product=endonuclease;protein_id=WP_010931002.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1110900 1111031 . + . ID=gene1087;Name=RD04_RS05440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05440;old_locus_tag=RD04_05430 NZ_CP010961.1 Protein Homology CDS 1110900 1111031 . + 0 ID=cds1068;Parent=gene1087;Dbxref=Genbank:WP_003812797.1;Name=WP_003812797.1;gbkey=CDS;product=entericidin;protein_id=WP_003812797.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1111157 1111591 . + . ID=gene1088;Name=RD04_RS05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05445;old_locus_tag=RD04_05435 NZ_CP010961.1 Protein Homology CDS 1111157 1111591 . + 0 ID=cds1069;Parent=gene1088;Dbxref=Genbank:WP_010931001.1;Name=WP_010931001.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010931001.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1111593 1112006 . + . ID=gene1089;Name=RD04_RS05450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05450;old_locus_tag=RD04_05440 NZ_CP010961.1 Protein Homology CDS 1111593 1112006 . + 0 ID=cds1070;Parent=gene1089;Dbxref=Genbank:WP_003820436.1;Name=WP_003820436.1;gbkey=CDS;product=membrane protein;protein_id=WP_003820436.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1112113 1113408 . + . ID=gene1090;Name=RD04_RS05455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05455;old_locus_tag=RD04_05445 NZ_CP010961.1 Protein Homology CDS 1112113 1113408 . + 0 ID=cds1071;Parent=gene1090;Dbxref=Genbank:WP_010926366.1;Name=WP_010926366.1;Note=catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate;gbkey=CDS;product=aspartate carbamoyltransferase;protein_id=WP_010926366.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1113448 1114347 . - . ID=gene1091;Name=RD04_RS05460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05460;old_locus_tag=RD04_05450 NZ_CP010961.1 Protein Homology CDS 1113448 1114347 . - 0 ID=cds1072;Parent=gene1091;Dbxref=Genbank:WP_003812788.1;Name=WP_003812788.1;gbkey=CDS;product=recombination-associated protein RdgC;protein_id=WP_003812788.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1114501 1114917 . + . ID=gene1092;Name=RD04_RS05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05465;old_locus_tag=RD04_05455 NZ_CP010961.1 Protein Homology CDS 1114501 1114917 . + 0 ID=cds1073;Parent=gene1092;Dbxref=Genbank:WP_010931000.1;Name=WP_010931000.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931000.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1114969 1116276 . - . ID=gene1093;Name=RD04_RS05470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05470;old_locus_tag=RD04_05460 NZ_CP010961.1 Protein Homology CDS 1114969 1116276 . - 0 ID=cds1074;Parent=gene1093;Dbxref=Genbank:WP_023994674.1;Name=WP_023994674.1;gbkey=CDS;product=CoA transferase;protein_id=WP_023994674.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1116293 1117180 . - . ID=gene1094;Name=RD04_RS05475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05475;old_locus_tag=RD04_05465 NZ_CP010961.1 Protein Homology CDS 1116293 1117180 . - 0 ID=cds1075;Parent=gene1094;Dbxref=Genbank:WP_010930998.1;Name=WP_010930998.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930998.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1117402 1118559 . + . ID=gene1095;Name=RD04_RS05480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05480;old_locus_tag=RD04_05470 NZ_CP010961.1 Protein Homology CDS 1117402 1118559 . + 0 ID=cds1076;Parent=gene1095;Dbxref=Genbank:WP_049787779.1;Name=WP_049787779.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049787779.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1118567 1118959 . + . ID=gene1096;Name=RD04_RS05485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05485;old_locus_tag=RD04_05475 NZ_CP010961.1 Protein Homology CDS 1118567 1118959 . + 0 ID=cds1077;Parent=gene1096;Dbxref=Genbank:WP_010930996.1;Name=WP_010930996.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930996.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1118960 1119403 . + . ID=gene1097;Name=RD04_RS05490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05490;old_locus_tag=RD04_05480 NZ_CP010961.1 Protein Homology CDS 1118960 1119403 . + 0 ID=cds1078;Parent=gene1097;Dbxref=Genbank:WP_003820449.1;Name=WP_003820449.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820449.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1119404 1120150 . + . ID=gene1098;Name=RD04_RS05495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05495;old_locus_tag=RD04_05485 NZ_CP010961.1 Protein Homology CDS 1119404 1120150 . + 0 ID=cds1079;Parent=gene1098;Dbxref=Genbank:WP_010930995.1;Name=WP_010930995.1;gbkey=CDS;product=3-oxoacyl-ACP reductase;protein_id=WP_010930995.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1120188 1121225 . + . ID=gene1099;Name=RD04_RS05500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05500;old_locus_tag=RD04_05490 NZ_CP010961.1 Protein Homology CDS 1120188 1121225 . + 0 ID=cds1080;Parent=gene1099;Dbxref=Genbank:WP_004567469.1;Name=WP_004567469.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_004567469.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1121254 1123005 . + . ID=gene1100;Name=RD04_RS05505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05505;old_locus_tag=RD04_05495 NZ_CP010961.1 Protein Homology CDS 1121254 1123005 . + 0 ID=cds1081;Parent=gene1100;Dbxref=Genbank:WP_010930994.1;Name=WP_010930994.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930994.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1123002 1124066 . + . ID=gene1101;Name=RD04_RS05510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05510;old_locus_tag=RD04_05500 NZ_CP010961.1 Protein Homology CDS 1123002 1124066 . + 0 ID=cds1082;Parent=gene1101;Dbxref=Genbank:WP_010930993.1;Name=WP_010930993.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930993.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1124094 1124870 . + . ID=gene1102;Name=RD04_RS05515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05515;old_locus_tag=RD04_05505 NZ_CP010961.1 Protein Homology CDS 1124094 1124870 . + 0 ID=cds1083;Parent=gene1102;Dbxref=Genbank:WP_015041674.1;Name=WP_015041674.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_015041674.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1125122 1126798 . - . ID=gene1103;Name=RD04_RS05520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05520;old_locus_tag=RD04_05510 NZ_CP010961.1 Protein Homology CDS 1125122 1126798 . - 0 ID=cds1084;Parent=gene1103;Dbxref=Genbank:WP_003820458.1;Name=WP_003820458.1;gbkey=CDS;product=MFS transporter;protein_id=WP_003820458.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1126993 1128489 . - . ID=gene1104;Name=RD04_RS05525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05525;old_locus_tag=RD04_05515 NZ_CP010961.1 Protein Homology CDS 1126993 1128489 . - 0 ID=cds1085;Parent=gene1104;Dbxref=Genbank:WP_019247281.1;Name=WP_019247281.1;gbkey=CDS;product=histidine kinase;protein_id=WP_019247281.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1128467 1129156 . - . ID=gene1105;Name=RD04_RS05530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05530;old_locus_tag=RD04_05520 NZ_CP010961.1 Protein Homology CDS 1128467 1129156 . - 0 ID=cds1086;Parent=gene1105;Dbxref=Genbank:WP_003812762.1;Name=WP_003812762.1;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_003812762.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1129396 1130457 . + . ID=gene1106;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=RD04_RS05535;old_locus_tag=RD04_05525 NZ_CP010961.1 Protein Homology CDS 1129396 1130457 . + 0 ID=cds1087;Parent=gene1106;Dbxref=Genbank:WP_003812760.1;Name=WP_003812760.1;Note=catalyzes the hydrolysis of ATP in the presence of single-stranded DNA%2C the ATP-dependent uptake of single-stranded DNA by duplex DNA%2C and the ATP-dependent hybridization of homologous single-stranded DNAs;gbkey=CDS;gene=recA;product=DNA recombination/repair protein RecA;protein_id=WP_003812760.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1130490 1131056 . + . ID=gene1107;Name=RD04_RS05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05540;old_locus_tag=RD04_05530 NZ_CP010961.1 Protein Homology CDS 1130490 1131056 . + 0 ID=cds1088;Parent=gene1107;Dbxref=Genbank:WP_010930990.1;Name=WP_010930990.1;gbkey=CDS;product=recombination regulator RecX;protein_id=WP_010930990.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1131131 1132060 . - . ID=gene1108;Name=RD04_RS05545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05545;old_locus_tag=RD04_05535 NZ_CP010961.1 Protein Homology CDS 1131131 1132060 . - 0 ID=cds1089;Parent=gene1108;Dbxref=Genbank:WP_003812755.1;Name=WP_003812755.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003812755.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1132222 1134516 . + . ID=gene1109;Name=RD04_RS05550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05550;old_locus_tag=RD04_05540 NZ_CP010961.1 Protein Homology CDS 1132222 1134516 . + 0 ID=cds1090;Parent=gene1109;Dbxref=Genbank:WP_010930989.1;Name=WP_010930989.1;gbkey=CDS;product=5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase;protein_id=WP_010930989.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1134721 1135323 . + . ID=gene1110;Name=RD04_RS05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05555;old_locus_tag=RD04_05545 NZ_CP010961.1 Protein Homology CDS 1134721 1135323 . + 0 ID=cds1091;Parent=gene1110;Dbxref=Genbank:WP_010930988.1;Name=WP_010930988.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930988.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1135334 1136494 . + . ID=gene1111;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=RD04_RS05560;old_locus_tag=RD04_05550 NZ_CP010961.1 Protein Homology CDS 1135334 1136494 . + 0 ID=cds1092;Parent=gene1111;Dbxref=Genbank:WP_003812749.1;Name=WP_003812749.1;Note=catalyzes the interconversion of succinyl-CoA and succinate;gbkey=CDS;gene=sucC;product=succinyl-CoA ligase subunit beta;protein_id=WP_003812749.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1136514 1137395 . + . ID=gene1112;Name=RD04_RS05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05565;old_locus_tag=RD04_05555 NZ_CP010961.1 Protein Homology CDS 1136514 1137395 . + 0 ID=cds1093;Parent=gene1112;Dbxref=Genbank:WP_003812748.1;Name=WP_003812748.1;gbkey=CDS;product=succinyl-CoA synthetase subunit alpha;protein_id=WP_003812748.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1137671 1138366 . + . ID=gene1113;Name=RD04_RS05570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05570;old_locus_tag=RD04_05560 NZ_CP010961.1 Protein Homology CDS 1137671 1138366 . + 0 ID=cds1094;Parent=gene1113;Dbxref=Genbank:WP_010930987.1;Name=WP_010930987.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930987.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1138525 1139244 . + . ID=gene1114;Name=RD04_RS05575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05575;old_locus_tag=RD04_05565 NZ_CP010961.1 Protein Homology CDS 1138525 1139244 . + 0 ID=cds1095;Parent=gene1114;Dbxref=Genbank:WP_010930986.1;Name=WP_010930986.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930986.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1139363 1140307 . + . ID=gene1115;Name=RD04_RS05580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05580;old_locus_tag=RD04_05570 NZ_CP010961.1 Protein Homology CDS 1139363 1140307 . + 0 ID=cds1096;Parent=gene1115;Dbxref=Genbank:WP_003820470.1;Name=WP_003820470.1;gbkey=CDS;product=hydroxymethylbilane synthase;protein_id=WP_003820470.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1140340 1141128 . + . ID=gene1116;Name=RD04_RS05585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05585;old_locus_tag=RD04_05575 NZ_CP010961.1 Protein Homology CDS 1140340 1141128 . + 0 ID=cds1097;Parent=gene1116;Dbxref=Genbank:WP_010930985.1;Name=WP_010930985.1;gbkey=CDS;product=uroporphyrinogen III methyltransferase;protein_id=WP_010930985.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1141166 1142350 . + . ID=gene1117;Name=RD04_RS05590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05590;old_locus_tag=RD04_05580 NZ_CP010961.1 Protein Homology CDS 1141166 1142350 . + 0 ID=cds1098;Parent=gene1117;Dbxref=Genbank:WP_010930984.1;Name=WP_010930984.1;gbkey=CDS;product=heme biosynthesis operon protein HemX;protein_id=WP_010930984.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1142354 1143949 . + . ID=gene1118;Name=RD04_RS05595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05595;old_locus_tag=RD04_05585 NZ_CP010961.1 Protein Homology CDS 1142354 1143949 . + 0 ID=cds1099;Parent=gene1118;Dbxref=Genbank:WP_010930983.1;Name=WP_010930983.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930983.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1143978 1144514 . + . ID=gene1119;Name=RD04_RS05600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05600;old_locus_tag=RD04_05590 NZ_CP010961.1 Protein Homology CDS 1143978 1144514 . + 0 ID=cds1100;Parent=gene1119;Dbxref=Genbank:WP_010930982.1;Name=WP_010930982.1;gbkey=CDS;product=inorganic pyrophosphatase;protein_id=WP_010930982.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1144709 1145404 . + . ID=gene1120;Name=RD04_RS05605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05605;old_locus_tag=RD04_05595 NZ_CP010961.1 Protein Homology CDS 1144709 1145404 . + 0 ID=cds1101;Parent=gene1120;Dbxref=Genbank:WP_010930981.1;Name=WP_010930981.1;gbkey=CDS;product=5-carboxymethyl-2-hydroxymuconate isomerase;protein_id=WP_010930981.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1145431 1145562 . + . ID=gene1121;Name=RD04_RS05610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05610;old_locus_tag=RD04_05600 NZ_CP010961.1 Protein Homology CDS 1145431 1145562 . + 0 ID=cds1102;Parent=gene1121;Dbxref=Genbank:WP_003812730.1;Name=WP_003812730.1;gbkey=CDS;product=entericidin;protein_id=WP_003812730.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1145756 1146019 . + . ID=gene1122;Name=RD04_RS05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05615;old_locus_tag=RD04_05605 NZ_CP010961.1 Protein Homology CDS 1145756 1146019 . + 0 ID=cds1103;Parent=gene1122;Dbxref=Genbank:WP_003812728.1;Name=WP_003812728.1;gbkey=CDS;product=membrane protein;protein_id=WP_003812728.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1146016 1147332 . + . ID=gene1123;Name=RD04_RS05620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05620;old_locus_tag=RD04_05610 NZ_CP010961.1 Protein Homology CDS 1146016 1147332 . + 0 ID=cds1104;Parent=gene1123;Dbxref=Genbank:WP_010930980.1;Name=WP_010930980.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930980.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1147329 1147926 . + . ID=gene1124;Name=RD04_RS05625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05625;old_locus_tag=RD04_05615;pseudo=true NZ_CP010961.1 Protein Homology CDS 1147329 1147926 . + 0 ID=cds1105;Parent=gene1124;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1147923 1148579 . + . ID=gene1125;Name=RD04_RS05630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05630;old_locus_tag=RD04_05620 NZ_CP010961.1 Protein Homology CDS 1147923 1148579 . + 0 ID=cds1106;Parent=gene1125;Dbxref=Genbank:WP_010930979.1;Name=WP_010930979.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930979.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1148576 1149421 . + . ID=gene1126;Name=RD04_RS05635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05635;old_locus_tag=RD04_05625 NZ_CP010961.1 Protein Homology CDS 1148576 1149421 . + 0 ID=cds1107;Parent=gene1126;Dbxref=Genbank:WP_010930978.1;Name=WP_010930978.1;gbkey=CDS;product=Flp pilus assembly protein CpaB;protein_id=WP_010930978.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1149418 1150830 . + . ID=gene1127;Name=RD04_RS05640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05640;old_locus_tag=RD04_05630 NZ_CP010961.1 Protein Homology CDS 1149418 1150830 . + 0 ID=cds1108;Parent=gene1127;Dbxref=Genbank:WP_010930977.1;Name=WP_010930977.1;gbkey=CDS;product=secretion protein;protein_id=WP_010930977.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1150827 1152444 . + . ID=gene1128;Name=RD04_RS05645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05645;old_locus_tag=RD04_05635;pseudo=true NZ_CP010961.1 Protein Homology CDS 1150827 1152444 . + 0 ID=cds1109;Parent=gene1128;Note=frameshifted;gbkey=CDS;product=secretion protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1152441 1153286 . + . ID=gene1129;Name=RD04_RS05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05650;old_locus_tag=RD04_05640 NZ_CP010961.1 Protein Homology CDS 1152441 1153286 . + 0 ID=cds1110;Parent=gene1129;Dbxref=Genbank:WP_010930976.1;Name=WP_010930976.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930976.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1153297 1153611 . + . ID=gene1130;Name=RD04_RS05655;end_range=1153611,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05655;old_locus_tag=RD04_05645;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 1153297 1153611 . + 0 ID=cds1111;Parent=gene1130;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=1153611,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1153759 1154661 . + . ID=gene1131;Name=RD04_RS05660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05660;old_locus_tag=RD04_05650 NZ_CP010961.1 GeneMarkS+ CDS 1153759 1154661 . + 0 ID=cds1112;Parent=gene1131;Dbxref=Genbank:WP_041166317.1;Name=WP_041166317.1;gbkey=CDS;product=integrase;protein_id=WP_041166317.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1154664 1155617 . + . ID=gene1132;Name=RD04_RS05665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05665;old_locus_tag=RD04_05655 NZ_CP010961.1 Protein Homology CDS 1154664 1155617 . + 0 ID=cds1113;Parent=gene1132;Dbxref=Genbank:WP_010930975.1;Name=WP_010930975.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930975.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1155645 1156496 . + . ID=gene1133;Name=RD04_RS05670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05670;old_locus_tag=RD04_05660 NZ_CP010961.1 Protein Homology CDS 1155645 1156496 . + 0 ID=cds1114;Parent=gene1133;Dbxref=Genbank:WP_019247213.1;Name=WP_019247213.1;gbkey=CDS;product=bifunctional 5%2C10-methylene-tetrahydrofolate dehydrogenase/5%2C10-methylene-tetrahydrofolate cyclohydrolase;protein_id=WP_019247213.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1156502 1157530 . - . ID=gene1134;Name=RD04_RS05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05675;old_locus_tag=RD04_05665 NZ_CP010961.1 Protein Homology CDS 1156502 1157530 . - 0 ID=cds1115;Parent=gene1134;Dbxref=Genbank:WP_010929099.1;Name=WP_010929099.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_010929099.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1157527 1158570 . - . ID=gene1135;Name=RD04_RS05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05680;old_locus_tag=RD04_05670 NZ_CP010961.1 Protein Homology CDS 1157527 1158570 . - 0 ID=cds1116;Parent=gene1135;Dbxref=Genbank:WP_010930973.1;Name=WP_010930973.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930973.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1158638 1159663 . - . ID=gene1136;Name=RD04_RS05685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05685;old_locus_tag=RD04_05675 NZ_CP010961.1 Protein Homology CDS 1158638 1159663 . - 0 ID=cds1117;Parent=gene1136;Dbxref=Genbank:WP_010930972.1;Name=WP_010930972.1;gbkey=CDS;product=dipeptidase;protein_id=WP_010930972.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1159945 1161198 . + . ID=gene1137;Name=RD04_RS05690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05690;old_locus_tag=RD04_05680 NZ_CP010961.1 Protein Homology CDS 1159945 1161198 . + 0 ID=cds1118;Parent=gene1137;Dbxref=Genbank:WP_010930971.1;Name=WP_010930971.1;gbkey=CDS;product=sarcosine oxidase subunit beta;protein_id=WP_010930971.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1161209 1161481 . + . ID=gene1138;Name=RD04_RS05695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05695;old_locus_tag=RD04_05685 NZ_CP010961.1 Protein Homology CDS 1161209 1161481 . + 0 ID=cds1119;Parent=gene1138;Dbxref=Genbank:WP_003821030.1;Name=WP_003821030.1;gbkey=CDS;product=sarcosine oxidase subunit delta;protein_id=WP_003821030.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1161478 1164417 . + . ID=gene1139;Name=RD04_RS05700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05700;old_locus_tag=RD04_05690 NZ_CP010961.1 Protein Homology CDS 1161478 1164417 . + 0 ID=cds1120;Parent=gene1139;Dbxref=Genbank:WP_010930970.1;Name=WP_010930970.1;gbkey=CDS;product=sarcosine oxidase subunit alpha;protein_id=WP_010930970.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1164425 1165024 . + . ID=gene1140;Name=RD04_RS05705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05705;old_locus_tag=RD04_05695 NZ_CP010961.1 Protein Homology CDS 1164425 1165024 . + 0 ID=cds1121;Parent=gene1140;Dbxref=Genbank:WP_010930969.1;Name=WP_010930969.1;gbkey=CDS;product=sarcosine oxidase subunit gamma;protein_id=WP_010930969.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1165025 1165873 . + . ID=gene1141;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=RD04_RS05710;old_locus_tag=RD04_05700 NZ_CP010961.1 Protein Homology CDS 1165025 1165873 . + 0 ID=cds1122;Parent=gene1141;Dbxref=Genbank:WP_010929093.1;Name=WP_010929093.1;Note=produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis%3B has a role in one-carbon metabolism%3B forms a homohexamer%3B activated by methionine and inhibited by glycine;gbkey=CDS;gene=purU;product=formyltetrahydrofolate deformylase;protein_id=WP_010929093.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1165911 1166897 . + . ID=gene1142;Name=RD04_RS05715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05715;old_locus_tag=RD04_05705 NZ_CP010961.1 Protein Homology CDS 1165911 1166897 . + 0 ID=cds1123;Parent=gene1142;Dbxref=Genbank:WP_019248827.1;Name=WP_019248827.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248827.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1166913 1168349 . + . ID=gene1143;Name=RD04_RS05720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05720;old_locus_tag=RD04_05710 NZ_CP010961.1 Protein Homology CDS 1166913 1168349 . + 0 ID=cds1124;Parent=gene1143;Dbxref=Genbank:WP_010930967.1;Name=WP_010930967.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930967.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1168362 1169153 . + . ID=gene1144;Name=RD04_RS05725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05725;old_locus_tag=RD04_05715 NZ_CP010961.1 Protein Homology CDS 1168362 1169153 . + 0 ID=cds1125;Parent=gene1144;Dbxref=Genbank:WP_010930966.1;Name=WP_010930966.1;gbkey=CDS;product=hydrolase;protein_id=WP_010930966.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1169214 1169289 . - . ID=gene1145;Name=RD04_RS05730;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS05730;old_locus_tag=RD04_05720 NZ_CP010961.1 tRNAscan-SE tRNA 1169214 1169289 . - . ID=rna19;Parent=gene1145;anticodon=(pos:complement(1169254..1169256));gbkey=tRNA;product=tRNA-Gly NZ_CP010961.1 tRNAscan-SE exon 1169214 1169289 . - . ID=id24;Parent=rna19;anticodon=(pos:complement(1169254..1169256));gbkey=tRNA;product=tRNA-Gly NZ_CP010961.1 RefSeq gene 1169472 1170527 . + . ID=gene1146;Name=RD04_RS05735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05735;old_locus_tag=RD04_05725 NZ_CP010961.1 Protein Homology CDS 1169472 1170527 . + 0 ID=cds1126;Parent=gene1146;Dbxref=Genbank:WP_010930965.1;Name=WP_010930965.1;gbkey=CDS;product=UDP-N-acetylenolpyruvoylglucosamine reductase;protein_id=WP_010930965.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1170564 1171373 . - . ID=gene1147;Name=RD04_RS05740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05740;old_locus_tag=RD04_05730 NZ_CP010961.1 Protein Homology CDS 1170564 1171373 . - 0 ID=cds1127;Parent=gene1147;Dbxref=Genbank:WP_010930964.1;Name=WP_010930964.1;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_010930964.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1171374 1171922 . - . ID=gene1148;Name=RD04_RS05745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05745;old_locus_tag=RD04_05735 NZ_CP010961.1 Protein Homology CDS 1171374 1171922 . - 0 ID=cds1128;Parent=gene1148;Dbxref=Genbank:WP_010930963.1;Name=WP_010930963.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930963.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1172073 1172492 . + . ID=gene1149;Name=RD04_RS05750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05750;old_locus_tag=RD04_05740 NZ_CP010961.1 Protein Homology CDS 1172073 1172492 . + 0 ID=cds1129;Parent=gene1149;Dbxref=Genbank:WP_003814098.1;Name=WP_003814098.1;gbkey=CDS;product=transcriptional repressor;protein_id=WP_003814098.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1172567 1174228 . - . ID=gene1150;Name=RD04_RS05755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05755;old_locus_tag=RD04_05745 NZ_CP010961.1 Protein Homology CDS 1172567 1174228 . - 0 ID=cds1130;Parent=gene1150;Dbxref=Genbank:WP_010930962.1;Name=WP_010930962.1;gbkey=CDS;product=DNA repair protein RecN;protein_id=WP_010930962.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1174244 1175143 . - . ID=gene1151;Name=ppnK;gbkey=Gene;gene=ppnK;gene_biotype=protein_coding;locus_tag=RD04_RS05760;old_locus_tag=RD04_05750 NZ_CP010961.1 Protein Homology CDS 1174244 1175143 . - 0 ID=cds1131;Parent=gene1151;Dbxref=Genbank:WP_010930961.1;Name=WP_010930961.1;Note=catalyzes the phosphorylation of NAD to NADP;gbkey=CDS;gene=ppnK;product=NAD(+) kinase;protein_id=WP_010930961.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1175258 1176262 . + . ID=gene1152;Name=RD04_RS05765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05765;old_locus_tag=RD04_05755 NZ_CP010961.1 Protein Homology CDS 1175258 1176262 . + 0 ID=cds1132;Parent=gene1152;Dbxref=Genbank:WP_003814090.1;Name=WP_003814090.1;gbkey=CDS;product=HrcA family transcriptional regulator;protein_id=WP_003814090.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1176320 1177408 . + . ID=gene1153;Name=RD04_RS05770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05770;old_locus_tag=RD04_05760 NZ_CP010961.1 Protein Homology CDS 1176320 1177408 . + 0 ID=cds1133;Parent=gene1153;Dbxref=Genbank:WP_023853055.1;Name=WP_023853055.1;gbkey=CDS;product=ferrochelatase;protein_id=WP_023853055.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1177490 1177732 . + . ID=gene1154;Name=RD04_RS05775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05775;old_locus_tag=RD04_05765 NZ_CP010961.1 Protein Homology CDS 1177490 1177732 . + 0 ID=cds1134;Parent=gene1154;Dbxref=Genbank:WP_003814085.1;Name=WP_003814085.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814085.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1177874 1178428 . + . ID=gene1155;Name=RD04_RS05780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05780;old_locus_tag=RD04_05770 NZ_CP010961.1 Protein Homology CDS 1177874 1178428 . + 0 ID=cds1135;Parent=gene1155;Dbxref=Genbank:WP_003814083.1;Name=WP_003814083.1;gbkey=CDS;product=nucleotide exchange factor GrpE;protein_id=WP_003814083.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1178436 1178816 . + . ID=gene1156;Name=RD04_RS05785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05785;old_locus_tag=RD04_05775 NZ_CP010961.1 Protein Homology CDS 1178436 1178816 . + 0 ID=cds1136;Parent=gene1156;Dbxref=Genbank:WP_010926991.1;Name=WP_010926991.1;gbkey=CDS;product=thiol reductase thioredoxin;protein_id=WP_010926991.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1178907 1180832 . + . ID=gene1157;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=RD04_RS05790;old_locus_tag=RD04_05780 NZ_CP010961.1 Protein Homology CDS 1178907 1180832 . + 0 ID=cds1137;Parent=gene1157;Dbxref=Genbank:WP_010930959.1;Name=WP_010930959.1;Note=heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria;gbkey=CDS;gene=dnaK;product=molecular chaperone DnaK;protein_id=WP_010930959.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1180933 1182066 . + . ID=gene1158;Name=RD04_RS05795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05795;old_locus_tag=RD04_05785 NZ_CP010961.1 Protein Homology CDS 1180933 1182066 . + 0 ID=cds1138;Parent=gene1158;Dbxref=Genbank:WP_010929084.1;Name=WP_010929084.1;Note=chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion;gbkey=CDS;product=molecular chaperone DnaJ;protein_id=WP_010929084.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1182235 1184985 . - . ID=gene1159;Name=RD04_RS05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05800;old_locus_tag=RD04_05790 NZ_CP010961.1 Protein Homology CDS 1182235 1184985 . - 0 ID=cds1139;Parent=gene1159;Dbxref=Genbank:WP_010930957.1;Name=WP_010930957.1;gbkey=CDS;product=zinc protease;protein_id=WP_010930957.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1185318 1185692 . + . ID=gene1160;Name=RD04_RS05805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05805;old_locus_tag=RD04_05795 NZ_CP010961.1 Protein Homology CDS 1185318 1185692 . + 0 ID=cds1140;Parent=gene1160;Dbxref=Genbank:WP_003814072.1;Name=WP_003814072.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814072.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1185730 1186272 . + . ID=gene1161;Name=RD04_RS05810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05810;old_locus_tag=RD04_05800 NZ_CP010961.1 Protein Homology CDS 1185730 1186272 . + 0 ID=cds1141;Parent=gene1161;Dbxref=Genbank:WP_010930956.1;Name=WP_010930956.1;gbkey=CDS;product=N-acetyltransferase;protein_id=WP_010930956.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1186276 1187448 . - . ID=gene1162;Name=RD04_RS05815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05815;old_locus_tag=RD04_05805 NZ_CP010961.1 Protein Homology CDS 1186276 1187448 . - 0 ID=cds1142;Parent=gene1162;Dbxref=Genbank:WP_010930955.1;Name=WP_010930955.1;gbkey=CDS;product=VWA domain-containing protein;protein_id=WP_010930955.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1187470 1188357 . - . ID=gene1163;Name=RD04_RS05820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05820;old_locus_tag=RD04_05810 NZ_CP010961.1 Protein Homology CDS 1187470 1188357 . - 0 ID=cds1143;Parent=gene1163;Dbxref=Genbank:WP_003814066.1;Name=WP_003814066.1;gbkey=CDS;product=ATP-binding protein;protein_id=WP_003814066.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1188450 1189400 . - . ID=gene1164;Name=RD04_RS05825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05825;old_locus_tag=RD04_05815 NZ_CP010961.1 Protein Homology CDS 1188450 1189400 . - 0 ID=cds1144;Parent=gene1164;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1189567 1189920 . + . ID=gene1165;Name=RD04_RS05830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05830;old_locus_tag=RD04_05820 NZ_CP010961.1 Protein Homology CDS 1189567 1189920 . + 0 ID=cds1145;Parent=gene1165;Dbxref=Genbank:WP_003814065.1;Name=WP_003814065.1;gbkey=CDS;product=cytochrome c;protein_id=WP_003814065.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1189933 1190295 . + . ID=gene1166;Name=RD04_RS05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05835;old_locus_tag=RD04_05825 NZ_CP010961.1 Protein Homology CDS 1189933 1190295 . + 0 ID=cds1146;Parent=gene1166;Dbxref=Genbank:WP_003814063.1;Name=WP_003814063.1;gbkey=CDS;product=cytochrome;protein_id=WP_003814063.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1190337 1190762 . - . ID=gene1167;Name=RD04_RS05840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05840;old_locus_tag=RD04_05830 NZ_CP010961.1 Protein Homology CDS 1190337 1190762 . - 0 ID=cds1147;Parent=gene1167;Dbxref=Genbank:WP_003814061.1;Name=WP_003814061.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814061.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1190965 1192221 . + . ID=gene1168;Name=RD04_RS05845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05845;old_locus_tag=RD04_05835 NZ_CP010961.1 Protein Homology CDS 1190965 1192221 . + 0 ID=cds1148;Parent=gene1168;Dbxref=Genbank:WP_003814059.1;Name=WP_003814059.1;Note=Converts isocitrate to alpha ketoglutarate;gbkey=CDS;product=isocitrate dehydrogenase (NADP(+));protein_id=WP_003814059.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1192420 1193400 . + . ID=gene1169;Name=RD04_RS05850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05850;old_locus_tag=RD04_05840 NZ_CP010961.1 Protein Homology CDS 1192420 1193400 . + 0 ID=cds1149;Parent=gene1169;Dbxref=Genbank:WP_003814057.1;Name=WP_003814057.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814057.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1193550 1194791 . + . ID=gene1170;Name=RD04_RS05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05855;old_locus_tag=RD04_05845 NZ_CP010961.1 Protein Homology CDS 1193550 1194791 . + 0 ID=cds1150;Parent=gene1170;Dbxref=Genbank:WP_005015028.1;Name=WP_005015028.1;gbkey=CDS;product=membrane protein;protein_id=WP_005015028.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1194890 1195840 . + . ID=gene1171;Name=RD04_RS05860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05860;old_locus_tag=RD04_05850 NZ_CP010961.1 Protein Homology CDS 1194890 1195840 . + 0 ID=cds1151;Parent=gene1171;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1195849 1196544 . - . ID=gene1172;Name=RD04_RS05865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05865;old_locus_tag=RD04_05855 NZ_CP010961.1 Protein Homology CDS 1195849 1196544 . - 0 ID=cds1152;Parent=gene1172;Dbxref=Genbank:WP_003814052.1;Name=WP_003814052.1;Note=response regulator in two-component regulatory system with KdpD%3B regulates the kdp operon involved in potassium transport;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_003814052.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1196551 1199347 . - . ID=gene1173;Name=RD04_RS05870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05870;old_locus_tag=RD04_05860;pseudo=true NZ_CP010961.1 Protein Homology CDS 1196551 1199347 . - 0 ID=cds1153;Parent=gene1173;Note=frameshifted;gbkey=CDS;product=two-component sensor histidine kinase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1199365 1199964 . - . ID=gene1174;Name=RD04_RS05875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05875;old_locus_tag=RD04_05865 NZ_CP010961.1 Protein Homology CDS 1199365 1199964 . - 0 ID=cds1154;Parent=gene1174;Dbxref=Genbank:WP_003814050.1;Name=WP_003814050.1;Note=One of the components of the high-affinity ATP-driven potassium transport (or KDP)system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex;gbkey=CDS;product=potassium-transporting ATPase subunit C;protein_id=WP_003814050.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1199975 1202140 . - . ID=gene1175;Name=RD04_RS05880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05880;old_locus_tag=RD04_05870 NZ_CP010961.1 Protein Homology CDS 1199975 1202140 . - 0 ID=cds1155;Parent=gene1175;Dbxref=Genbank:WP_010930950.1;Name=WP_010930950.1;gbkey=CDS;product=potassium-transporting ATPase subunit B;protein_id=WP_010930950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1202164 1203948 . - . ID=gene1176;Name=RD04_RS05885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05885;old_locus_tag=RD04_05875 NZ_CP010961.1 Protein Homology CDS 1202164 1203948 . - 0 ID=cds1156;Parent=gene1176;Dbxref=Genbank:WP_010930949.1;Name=WP_010930949.1;gbkey=CDS;product=potassium-transporting ATPase A chain;protein_id=WP_010930949.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1204732 1205004 . + . ID=gene1177;Name=RD04_RS05890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05890;old_locus_tag=RD04_05880 NZ_CP010961.1 Protein Homology CDS 1204732 1205004 . + 0 ID=cds1157;Parent=gene1177;Dbxref=Genbank:WP_003814042.1;Name=WP_003814042.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814042.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1205004 1207070 . + . ID=gene1178;Name=RD04_RS05895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05895;old_locus_tag=RD04_05885 NZ_CP010961.1 Protein Homology CDS 1205004 1207070 . + 0 ID=cds1158;Parent=gene1178;Dbxref=Genbank:WP_003814040.1;Name=WP_003814040.1;gbkey=CDS;product=cation acetate symporter;protein_id=WP_003814040.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1207067 1207969 . - . ID=gene1179;Name=RD04_RS05900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05900;old_locus_tag=RD04_05890 NZ_CP010961.1 GeneMarkS+ CDS 1207067 1207969 . - 0 ID=cds1159;Parent=gene1179;Dbxref=Genbank:WP_023994703.1;Name=WP_023994703.1;gbkey=CDS;product=transposase;protein_id=WP_023994703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1208133 1208465 . - . ID=gene1180;Name=RD04_RS05905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05905;old_locus_tag=RD04_05895 NZ_CP010961.1 Protein Homology CDS 1208133 1208465 . - 0 ID=cds1160;Parent=gene1180;Dbxref=Genbank:WP_005015014.1;Name=WP_005015014.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_005015014.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1208462 1209147 . - . ID=gene1181;Name=RD04_RS05910;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS05910;old_locus_tag=RD04_05900;pseudo=true NZ_CP010961.1 Protein Homology CDS 1208462 1209147 . - 0 ID=cds1161;Parent=gene1181;Note=frameshifted;gbkey=CDS;product=DNA mismatch repair protein MutS;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1209134 1210093 . - . ID=gene1182;Name=RD04_RS05915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05915;old_locus_tag=RD04_05905 NZ_CP010961.1 Protein Homology CDS 1209134 1210093 . - 0 ID=cds1162;Parent=gene1182;Dbxref=Genbank:WP_010930948.1;Name=WP_010930948.1;Note=catalyzes the transfer of electrons from NADPH to thioredoxin%3B FAD/NAD(P) binding;gbkey=CDS;product=thioredoxin-disulfide reductase;protein_id=WP_010930948.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1210126 1212495 . + . ID=gene1183;Name=RD04_RS05920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05920;old_locus_tag=RD04_05910 NZ_CP010961.1 Protein Homology CDS 1210126 1212495 . + 0 ID=cds1163;Parent=gene1183;Dbxref=Genbank:WP_010930947.1;Name=WP_010930947.1;gbkey=CDS;product=cell division protein FtsK;protein_id=WP_010930947.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1212495 1213127 . + . ID=gene1184;Name=RD04_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05925;old_locus_tag=RD04_05915 NZ_CP010961.1 Protein Homology CDS 1212495 1213127 . + 0 ID=cds1164;Parent=gene1184;Dbxref=Genbank:WP_010930946.1;Name=WP_010930946.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930946.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1213229 1214569 . + . ID=gene1185;Name=RD04_RS05930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05930;old_locus_tag=RD04_05920 NZ_CP010961.1 Protein Homology CDS 1213229 1214569 . + 0 ID=cds1165;Parent=gene1185;Dbxref=Genbank:WP_010930945.1;Name=WP_010930945.1;gbkey=CDS;product=ATPase AAA;protein_id=WP_010930945.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1214616 1215971 . + . ID=gene1186;Name=RD04_RS05935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05935;old_locus_tag=RD04_05925 NZ_CP010961.1 Protein Homology CDS 1214616 1215971 . + 0 ID=cds1166;Parent=gene1186;Dbxref=Genbank:WP_010930944.1;Name=WP_010930944.1;gbkey=CDS;product=serine--tRNA ligase;protein_id=WP_010930944.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1216262 1216498 . + . ID=gene1187;Name=RD04_RS05940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05940;old_locus_tag=RD04_05930 NZ_CP010961.1 Protein Homology CDS 1216262 1216498 . + 0 ID=cds1167;Parent=gene1187;Dbxref=Genbank:WP_005014990.1;Name=WP_005014990.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005014990.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1216686 1217003 . - . ID=gene1188;Name=RD04_RS05945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05945;old_locus_tag=RD04_05935 NZ_CP010961.1 Protein Homology CDS 1216686 1217003 . - 0 ID=cds1168;Parent=gene1188;Dbxref=Genbank:WP_003814024.1;Name=WP_003814024.1;gbkey=CDS;product=virulence factor;protein_id=WP_003814024.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1217276 1217791 . - . ID=gene1189;Name=RD04_RS05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05950;old_locus_tag=RD04_05940 NZ_CP010961.1 Protein Homology CDS 1217276 1217791 . - 0 ID=cds1169;Parent=gene1189;Dbxref=Genbank:WP_003814023.1;Name=WP_003814023.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814023.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1217885 1218046 . + . ID=gene1190;Name=RD04_RS05955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05955;old_locus_tag=RD04_05945 NZ_CP010961.1 Protein Homology CDS 1217885 1218046 . + 0 ID=cds1170;Parent=gene1190;Dbxref=Genbank:WP_003814022.1;Name=WP_003814022.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814022.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1218062 1218817 . - . ID=gene1191;Name=RD04_RS05960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05960;old_locus_tag=RD04_05950 NZ_CP010961.1 Protein Homology CDS 1218062 1218817 . - 0 ID=cds1171;Parent=gene1191;Dbxref=Genbank:WP_003814021.1;Name=WP_003814021.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814021.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1219156 1219362 . + . ID=gene1192;Name=RD04_RS05965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05965;old_locus_tag=RD04_05955 NZ_CP010961.1 Protein Homology CDS 1219156 1219362 . + 0 ID=cds1172;Parent=gene1192;Dbxref=Genbank:WP_019247690.1;Name=WP_019247690.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247690.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1219370 1220029 . - . ID=gene1193;Name=RD04_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05970;old_locus_tag=RD04_05960 NZ_CP010961.1 Protein Homology CDS 1219370 1220029 . - 0 ID=cds1173;Parent=gene1193;Dbxref=Genbank:WP_003814020.1;Name=WP_003814020.1;gbkey=CDS;product=antibiotic resistance protein;protein_id=WP_003814020.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1220324 1222528 . - . ID=gene1194;Name=RD04_RS05975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05975;old_locus_tag=RD04_05965 NZ_CP010961.1 Protein Homology CDS 1220324 1222528 . - 0 ID=cds1174;Parent=gene1194;Dbxref=Genbank:WP_010930941.1;Name=WP_010930941.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_010930941.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1222639 1223862 . - . ID=gene1195;Name=RD04_RS05980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05980;old_locus_tag=RD04_05970 NZ_CP010961.1 Protein Homology CDS 1222639 1223862 . - 0 ID=cds1175;Parent=gene1195;Dbxref=Genbank:WP_010930940.1;Name=WP_010930940.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_010930940.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1223985 1224959 . - . ID=gene1196;Name=RD04_RS05985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05985;old_locus_tag=RD04_05975 NZ_CP010961.1 Protein Homology CDS 1223985 1224959 . - 0 ID=cds1176;Parent=gene1196;Dbxref=Genbank:WP_003814017.1;Name=WP_003814017.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003814017.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1225027 1226220 . - . ID=gene1197;Name=RD04_RS05990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05990;old_locus_tag=RD04_05980 NZ_CP010961.1 Protein Homology CDS 1225027 1226220 . - 0 ID=cds1177;Parent=gene1197;Dbxref=Genbank:WP_005013753.1;Name=WP_005013753.1;gbkey=CDS;product=iron-sulfur protein;protein_id=WP_005013753.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1226235 1227035 . - . ID=gene1198;Name=RD04_RS05995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS05995;old_locus_tag=RD04_05985 NZ_CP010961.1 Protein Homology CDS 1226235 1227035 . - 0 ID=cds1178;Parent=gene1198;Dbxref=Genbank:WP_003814016.1;Name=WP_003814016.1;gbkey=CDS;product=siderophore ferric iron reductase;protein_id=WP_003814016.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1227032 1228888 . - . ID=gene1199;Name=RD04_RS06000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06000;old_locus_tag=RD04_05990 NZ_CP010961.1 Protein Homology CDS 1227032 1228888 . - 0 ID=cds1179;Parent=gene1199;Dbxref=Genbank:WP_010930939.1;Name=WP_010930939.1;gbkey=CDS;product=alcaligin biosynthesis protein;protein_id=WP_010930939.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1228885 1229490 . - . ID=gene1200;Name=RD04_RS06005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06005;old_locus_tag=RD04_05995 NZ_CP010961.1 Protein Homology CDS 1228885 1229490 . - 0 ID=cds1180;Parent=gene1200;Dbxref=Genbank:WP_003814014.1;Name=WP_003814014.1;gbkey=CDS;product=alcaligin biosynthesis protein;protein_id=WP_003814014.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1229509 1230894 . - . ID=gene1201;Name=RD04_RS06010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06010;old_locus_tag=RD04_06000 NZ_CP010961.1 Protein Homology CDS 1229509 1230894 . - 0 ID=cds1181;Parent=gene1201;Dbxref=Genbank:WP_003814013.1;Name=WP_003814013.1;gbkey=CDS;product=alcaligin biosynthesis enzyme;protein_id=WP_003814013.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1231291 1231380 . - . ID=gene1202;Name=RD04_RS06015;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS06015;old_locus_tag=RD04_06005 NZ_CP010961.1 tRNAscan-SE tRNA 1231291 1231380 . - . ID=rna20;Parent=gene1202;anticodon=(pos:complement(1231344..1231346));gbkey=tRNA;product=tRNA-Ser NZ_CP010961.1 tRNAscan-SE exon 1231291 1231380 . - . ID=id25;Parent=rna20;anticodon=(pos:complement(1231344..1231346));gbkey=tRNA;product=tRNA-Ser NZ_CP010961.1 RefSeq gene 1231620 1232846 . + . ID=gene1203;Name=RD04_RS06020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06020;old_locus_tag=RD04_06010 NZ_CP010961.1 Protein Homology CDS 1231620 1232846 . + 0 ID=cds1182;Parent=gene1203;Dbxref=Genbank:WP_003814012.1;Name=WP_003814012.1;gbkey=CDS;product=transporter;protein_id=WP_003814012.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1232935 1233717 . + . ID=gene1204;Name=RD04_RS06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06025;old_locus_tag=RD04_06015 NZ_CP010961.1 Protein Homology CDS 1232935 1233717 . + 0 ID=cds1183;Parent=gene1204;Dbxref=Genbank:WP_003814011.1;Name=WP_003814011.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_003814011.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1233864 1234766 . + . ID=gene1205;Name=RD04_RS06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06030;old_locus_tag=RD04_06020 NZ_CP010961.1 GeneMarkS+ CDS 1233864 1234766 . + 0 ID=cds1184;Parent=gene1205;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1234793 1235566 . + . ID=gene1206;Name=RD04_RS06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06035;old_locus_tag=RD04_06025 NZ_CP010961.1 Protein Homology CDS 1234793 1235566 . + 0 ID=cds1185;Parent=gene1206;Dbxref=Genbank:WP_003814010.1;Name=WP_003814010.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814010.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1235578 1236819 . + . ID=gene1207;Name=RD04_RS06040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06040;old_locus_tag=RD04_06030 NZ_CP010961.1 Protein Homology CDS 1235578 1236819 . + 0 ID=cds1186;Parent=gene1207;Dbxref=Genbank:WP_003814009.1;Name=WP_003814009.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814009.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1236826 1238514 . - . ID=gene1208;Name=RD04_RS06045;end_range=1238514,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06045;old_locus_tag=RD04_06035;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 1236826 1238514 . - 0 ID=cds1187;Parent=gene1208;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=1238514,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1238649 1239551 . + . ID=gene1209;Name=RD04_RS06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06050;old_locus_tag=RD04_06040 NZ_CP010961.1 GeneMarkS+ CDS 1238649 1239551 . + 0 ID=cds1188;Parent=gene1209;Dbxref=Genbank:WP_039250196.1;Name=WP_039250196.1;gbkey=CDS;product=integrase;protein_id=WP_039250196.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1239583 1240680 . + . ID=gene1210;Name=RD04_RS06055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06055;old_locus_tag=RD04_06045 NZ_CP010961.1 Protein Homology CDS 1239583 1240680 . + 0 ID=cds1189;Parent=gene1210;Dbxref=Genbank:WP_010930389.1;Name=WP_010930389.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930389.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1240677 1241627 . - . ID=gene1211;Name=RD04_RS06060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06060;old_locus_tag=RD04_06050 NZ_CP010961.1 Protein Homology CDS 1240677 1241627 . - 0 ID=cds1190;Parent=gene1211;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1241645 1242052 . + . ID=gene1212;Name=RD04_RS06065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06065;old_locus_tag=RD04_06055 NZ_CP010961.1 GeneMarkS+ CDS 1241645 1242052 . + 0 ID=cds1191;Parent=gene1212;Dbxref=Genbank:WP_023853404.1;Name=WP_023853404.1;gbkey=CDS;product=HemN protein;protein_id=WP_023853404.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1242049 1242441 . - . ID=gene1213;Name=RD04_RS06070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06070;old_locus_tag=RD04_06060 NZ_CP010961.1 Protein Homology CDS 1242049 1242441 . - 0 ID=cds1192;Parent=gene1213;Dbxref=Genbank:WP_003812612.1;Name=WP_003812612.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812612.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1242447 1243223 . - . ID=gene1214;Name=RD04_RS06075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06075;old_locus_tag=RD04_06065 NZ_CP010961.1 Protein Homology CDS 1242447 1243223 . - 0 ID=cds1193;Parent=gene1214;Dbxref=Genbank:WP_019248759.1;Name=WP_019248759.1;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_019248759.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1243611 1245560 . + . ID=gene1215;Name=RD04_RS06080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06080;old_locus_tag=RD04_06070 NZ_CP010961.1 Protein Homology CDS 1243611 1245560 . + 0 ID=cds1194;Parent=gene1215;Dbxref=Genbank:WP_003812608.1;Name=WP_003812608.1;gbkey=CDS;product=threonine--tRNA ligase;protein_id=WP_003812608.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1245581 1246126 . + . ID=gene1216;Name=RD04_RS06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06085;old_locus_tag=RD04_06075 NZ_CP010961.1 Protein Homology CDS 1245581 1246126 . + 0 ID=cds1195;Parent=gene1216;Dbxref=Genbank:WP_033446215.1;Name=WP_033446215.1;gbkey=CDS;product=translation initiation factor IF-3;protein_id=WP_033446215.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1246263 1247219 . + . ID=gene1217;Name=RD04_RS06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06090;old_locus_tag=RD04_06080 NZ_CP010961.1 Protein Homology CDS 1246263 1247219 . + 0 ID=cds1196;Parent=gene1217;Dbxref=Genbank:WP_010930391.1;Name=WP_010930391.1;gbkey=CDS;product=glutathione synthetase;protein_id=WP_010930391.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1247230 1247628 . + . ID=gene1218;Name=RD04_RS06095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06095;old_locus_tag=RD04_06085 NZ_CP010961.1 Protein Homology CDS 1247230 1247628 . + 0 ID=cds1197;Parent=gene1218;Dbxref=Genbank:WP_003812601.1;Name=WP_003812601.1;gbkey=CDS;product=PTS mannose transporter subunit IIA;protein_id=WP_003812601.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1247744 1248013 . + . ID=gene1219;Name=RD04_RS06100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06100;old_locus_tag=RD04_06090 NZ_CP010961.1 Protein Homology CDS 1247744 1248013 . + 0 ID=cds1198;Parent=gene1219;Dbxref=Genbank:WP_003812598.1;Name=WP_003812598.1;gbkey=CDS;product=phosphocarrier protein HPr;protein_id=WP_003812598.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1248135 1249829 . + . ID=gene1220;Name=RD04_RS06105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06105;old_locus_tag=RD04_06095 NZ_CP010961.1 Protein Homology CDS 1248135 1249829 . + 0 ID=cds1199;Parent=gene1220;Dbxref=Genbank:WP_010930392.1;Name=WP_010930392.1;gbkey=CDS;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_010930392.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1249994 1250218 . - . ID=gene1221;Name=RD04_RS06110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06110;old_locus_tag=RD04_06100 NZ_CP010961.1 Protein Homology CDS 1249994 1250218 . - 0 ID=cds1200;Parent=gene1221;Dbxref=Genbank:WP_010930393.1;Name=WP_010930393.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930393.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1250817 1251767 . + . ID=gene1222;Name=RD04_RS06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06115;old_locus_tag=RD04_06105 NZ_CP010961.1 Protein Homology CDS 1250817 1251767 . + 0 ID=cds1201;Parent=gene1222;Dbxref=Genbank:WP_010930394.1;Name=WP_010930394.1;Note=catalyzes the formation of L-proline from L-ornithine;gbkey=CDS;product=ornithine cyclodeaminase;protein_id=WP_010930394.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1251809 1252969 . + . ID=gene1223;Name=RD04_RS06120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06120;old_locus_tag=RD04_06110 NZ_CP010961.1 Protein Homology CDS 1251809 1252969 . + 0 ID=cds1202;Parent=gene1223;Dbxref=Genbank:WP_010930395.1;Name=WP_010930395.1;gbkey=CDS;product=branched-chain amino acid ABC transporter substrate-binding protein;protein_id=WP_010930395.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1253130 1254050 . + . ID=gene1224;Name=RD04_RS06125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06125;old_locus_tag=RD04_06115 NZ_CP010961.1 Protein Homology CDS 1253130 1254050 . + 0 ID=cds1203;Parent=gene1224;Dbxref=Genbank:WP_010930396.1;Name=WP_010930396.1;gbkey=CDS;product=ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB;protein_id=WP_010930396.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1254063 1254704 . + . ID=gene1225;Name=RD04_RS06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06130;old_locus_tag=RD04_06120 NZ_CP010961.1 Protein Homology CDS 1254063 1254704 . + 0 ID=cds1204;Parent=gene1225;Dbxref=Genbank:WP_003812581.1;Name=WP_003812581.1;gbkey=CDS;product=ectoine/hydroxyectoine ABC transporter permease subunit EhuC;protein_id=WP_003812581.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1254701 1255372 . + . ID=gene1226;Name=RD04_RS06135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06135;old_locus_tag=RD04_06125 NZ_CP010961.1 Protein Homology CDS 1254701 1255372 . + 0 ID=cds1205;Parent=gene1226;Dbxref=Genbank:WP_010930397.1;Name=WP_010930397.1;gbkey=CDS;product=ectoine/hydroxyectoine ABC transporter permease subunit EhuD;protein_id=WP_010930397.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1255369 1256139 . + . ID=gene1227;Name=RD04_RS06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06140;old_locus_tag=RD04_06130 NZ_CP010961.1 Protein Homology CDS 1255369 1256139 . + 0 ID=cds1206;Parent=gene1227;Dbxref=Genbank:WP_003812577.1;Name=WP_003812577.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003812577.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1256238 1257188 . + . ID=gene1228;Name=RD04_RS06145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06145;old_locus_tag=RD04_06135 NZ_CP010961.1 Protein Homology CDS 1256238 1257188 . + 0 ID=cds1207;Parent=gene1228;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1257405 1257809 . - . ID=gene1229;Name=RD04_RS06150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06150;old_locus_tag=RD04_06140 NZ_CP010961.1 Protein Homology CDS 1257405 1257809 . - 0 ID=cds1208;Parent=gene1229;Dbxref=Genbank:WP_003819820.1;Name=WP_003819820.1;gbkey=CDS;product=aldehyde-activating protein;protein_id=WP_003819820.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1257883 1259073 . - . ID=gene1230;Name=RD04_RS06155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06155;old_locus_tag=RD04_06145 NZ_CP010961.1 Protein Homology CDS 1257883 1259073 . - 0 ID=cds1209;Parent=gene1230;Dbxref=Genbank:WP_010930398.1;Name=WP_010930398.1;Note=Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen%2C nitrate%2C sulphate or fumarate;gbkey=CDS;product=formate dehydrogenase;protein_id=WP_010930398.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1259107 1259433 . - . ID=gene1231;Name=RD04_RS06160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06160;old_locus_tag=RD04_06150 NZ_CP010961.1 Protein Homology CDS 1259107 1259433 . - 0 ID=cds1210;Parent=gene1231;Dbxref=Genbank:WP_010930399.1;Name=WP_010930399.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930399.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1259456 1259971 . - . ID=gene1232;Name=RD04_RS06165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06165;old_locus_tag=RD04_06155 NZ_CP010961.1 Protein Homology CDS 1259456 1259971 . - 0 ID=cds1211;Parent=gene1232;Dbxref=Genbank:WP_003809503.1;Name=WP_003809503.1;gbkey=CDS;product=transporter;protein_id=WP_003809503.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1260030 1261256 . - . ID=gene1233;Name=RD04_RS06170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06170;old_locus_tag=RD04_06160 NZ_CP010961.1 Protein Homology CDS 1260030 1261256 . - 0 ID=cds1212;Parent=gene1233;Dbxref=Genbank:WP_010930400.1;Name=WP_010930400.1;gbkey=CDS;product=formamidase;protein_id=WP_010930400.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1261434 1262564 . - . ID=gene1234;Name=RD04_RS06175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06175;old_locus_tag=RD04_06165 NZ_CP010961.1 Protein Homology CDS 1261434 1262564 . - 0 ID=cds1213;Parent=gene1234;Dbxref=Genbank:WP_010930401.1;Name=WP_010930401.1;gbkey=CDS;product=helix-turn-helix transcriptional regulator;protein_id=WP_010930401.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1262799 1263380 . + . ID=gene1235;Name=RD04_RS06180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06180;old_locus_tag=RD04_06170 NZ_CP010961.1 Protein Homology CDS 1262799 1263380 . + 0 ID=cds1214;Parent=gene1235;Dbxref=Genbank:WP_019247931.1;Name=WP_019247931.1;gbkey=CDS;product=molybdenum cofactor biosysynthesis protein;protein_id=WP_019247931.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1263517 1264581 . + . ID=gene1236;Name=RD04_RS06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06185;old_locus_tag=RD04_06175 NZ_CP010961.1 Protein Homology CDS 1263517 1264581 . + 0 ID=cds1215;Parent=gene1236;Dbxref=Genbank:WP_003809510.1;Name=WP_003809510.1;Note=class II aldolase%3B catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle%2C glycolysis and gluconeogenesis;gbkey=CDS;product=fructose-1%2C6-bisphosphate aldolase;protein_id=WP_003809510.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1264666 1265112 . - . ID=gene1237;Name=RD04_RS06190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06190;old_locus_tag=RD04_06180 NZ_CP010961.1 Protein Homology CDS 1264666 1265112 . - 0 ID=cds1216;Parent=gene1237;Dbxref=Genbank:WP_003819827.1;Name=WP_003819827.1;gbkey=CDS;product=aldehyde-activating protein;protein_id=WP_003819827.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1265337 1266218 . + . ID=gene1238;Name=RD04_RS06195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06195;old_locus_tag=RD04_06185 NZ_CP010961.1 Protein Homology CDS 1265337 1266218 . + 0 ID=cds1217;Parent=gene1238;Dbxref=Genbank:WP_003809513.1;Name=WP_003809513.1;Note=catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase;gbkey=CDS;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_003809513.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1266273 1266524 . + . ID=gene1239;Name=RD04_RS06200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06200;old_locus_tag=RD04_06190 NZ_CP010961.1 Protein Homology CDS 1266273 1266524 . + 0 ID=cds1218;Parent=gene1239;Dbxref=Genbank:WP_047122780.1;Name=WP_047122780.1;gbkey=CDS;product=mRNA interferase MqsR;protein_id=WP_047122780.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1266527 1266928 . + . ID=gene1240;Name=RD04_RS06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06205;old_locus_tag=RD04_06195 NZ_CP010961.1 Protein Homology CDS 1266527 1266928 . + 0 ID=cds1219;Parent=gene1240;Dbxref=Genbank:WP_003809516.1;Name=WP_003809516.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_003809516.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1267192 1267671 . + . ID=gene1241;Name=RD04_RS06210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06210;old_locus_tag=RD04_06200 NZ_CP010961.1 Protein Homology CDS 1267192 1267671 . + 0 ID=cds1220;Parent=gene1241;Dbxref=Genbank:WP_010930405.1;Name=WP_010930405.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930405.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1267821 1268336 . + . ID=gene1242;Name=RD04_RS06215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06215;old_locus_tag=RD04_06205 NZ_CP010961.1 Protein Homology CDS 1267821 1268336 . + 0 ID=cds1221;Parent=gene1242;Dbxref=Genbank:WP_019247930.1;Name=WP_019247930.1;gbkey=CDS;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=WP_019247930.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1268339 1269529 . + . ID=gene1243;Name=RD04_RS06220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06220;old_locus_tag=RD04_06210 NZ_CP010961.1 Protein Homology CDS 1268339 1269529 . + 0 ID=cds1222;Parent=gene1243;Dbxref=Genbank:WP_010930406.1;Name=WP_010930406.1;gbkey=CDS;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=WP_010930406.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1269549 1270586 . + . ID=gene1244;Name=RD04_RS06225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06225;old_locus_tag=RD04_06215 NZ_CP010961.1 Protein Homology CDS 1269549 1270586 . + 0 ID=cds1223;Parent=gene1244;Dbxref=Genbank:WP_023853543.1;Name=WP_023853543.1;gbkey=CDS;product=tRNA threonylcarbamoyl adenosine modification protein%2C Sua5/YciO/YrdC/YwlC family;protein_id=WP_023853543.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1270723 1271745 . + . ID=gene1245;Name=RD04_RS06230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06230;old_locus_tag=RD04_06220 NZ_CP010961.1 Protein Homology CDS 1270723 1271745 . + 0 ID=cds1224;Parent=gene1245;Dbxref=Genbank:WP_003809532.1;Name=WP_003809532.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_003809532.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1271837 1272673 . + . ID=gene1246;Name=RD04_RS06235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06235;old_locus_tag=RD04_06225 NZ_CP010961.1 Protein Homology CDS 1271837 1272673 . + 0 ID=cds1225;Parent=gene1246;Dbxref=Genbank:WP_003819839.1;Name=WP_003819839.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003819839.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1272866 1273771 . + . ID=gene1247;Name=RD04_RS06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06240;old_locus_tag=RD04_06230 NZ_CP010961.1 Protein Homology CDS 1272866 1273771 . + 0 ID=cds1226;Parent=gene1247;Dbxref=Genbank:WP_003809536.1;Name=WP_003809536.1;gbkey=CDS;product=arginase;protein_id=WP_003809536.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1273798 1274589 . + . ID=gene1248;Name=RD04_RS06245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06245;old_locus_tag=RD04_06235 NZ_CP010961.1 Protein Homology CDS 1273798 1274589 . + 0 ID=cds1227;Parent=gene1248;Dbxref=Genbank:WP_010930408.1;Name=WP_010930408.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_010930408.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1274612 1275304 . + . ID=gene1249;Name=RD04_RS06250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06250;old_locus_tag=RD04_06240 NZ_CP010961.1 Protein Homology CDS 1274612 1275304 . + 0 ID=cds1228;Parent=gene1249;Dbxref=Genbank:WP_010930409.1;Name=WP_010930409.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_010930409.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1275326 1276078 . + . ID=gene1250;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=RD04_RS06255;old_locus_tag=RD04_06245 NZ_CP010961.1 Protein Homology CDS 1275326 1276078 . + 0 ID=cds1229;Parent=gene1250;Dbxref=Genbank:WP_010930410.1;Name=WP_010930410.1;Note=similar to ATP-binding component of ABC transporters;gbkey=CDS;gene=glnQ;product=ABC transporter ATP-binding protein;protein_id=WP_010930410.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1276207 1277766 . + . ID=gene1251;Name=RD04_RS06260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06260;old_locus_tag=RD04_06250 NZ_CP010961.1 Protein Homology CDS 1276207 1277766 . + 0 ID=cds1230;Parent=gene1251;Dbxref=Genbank:WP_010930411.1;Name=WP_010930411.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930411.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1277900 1278343 . + . ID=gene1252;Name=RD04_RS06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06265;old_locus_tag=RD04_06255 NZ_CP010961.1 Protein Homology CDS 1277900 1278343 . + 0 ID=cds1231;Parent=gene1252;Dbxref=Genbank:WP_010930412.1;Name=WP_010930412.1;gbkey=CDS;product=acyl dehydratase;protein_id=WP_010930412.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1278481 1279674 . - . ID=gene1253;Name=RD04_RS06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06270;old_locus_tag=RD04_06260 NZ_CP010961.1 Protein Homology CDS 1278481 1279674 . - 0 ID=cds1232;Parent=gene1253;Dbxref=Genbank:WP_010930413.1;Name=WP_010930413.1;gbkey=CDS;product=glutaryl-CoA dehydrogenase;protein_id=WP_010930413.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1279754 1281448 . - . ID=gene1254;Name=RD04_RS06275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06275;old_locus_tag=RD04_06265 NZ_CP010961.1 Protein Homology CDS 1279754 1281448 . - 0 ID=cds1233;Parent=gene1254;Dbxref=Genbank:WP_003819848.1;Name=WP_003819848.1;gbkey=CDS;product=acetolactate synthase large subunit;protein_id=WP_003819848.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1281606 1282493 . + . ID=gene1255;Name=RD04_RS06280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06280;old_locus_tag=RD04_06270 NZ_CP010961.1 Protein Homology CDS 1281606 1282493 . + 0 ID=cds1234;Parent=gene1255;Dbxref=Genbank:WP_019247927.1;Name=WP_019247927.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_019247927.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1282531 1283463 . + . ID=gene1256;Name=RD04_RS06285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06285;old_locus_tag=RD04_06275 NZ_CP010961.1 Protein Homology CDS 1282531 1283463 . + 0 ID=cds1235;Parent=gene1256;Dbxref=Genbank:WP_010930415.1;Name=WP_010930415.1;gbkey=CDS;product=site-specific tyrosine recombinase XerD;protein_id=WP_010930415.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1283477 1283965 . + . ID=gene1257;Name=RD04_RS06290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06290;old_locus_tag=RD04_06280 NZ_CP010961.1 Protein Homology CDS 1283477 1283965 . + 0 ID=cds1236;Parent=gene1257;Dbxref=Genbank:WP_010930416.1;Name=WP_010930416.1;gbkey=CDS;product=aminoacyl-tRNA deacylase;protein_id=WP_010930416.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1284083 1284661 . + . ID=gene1258;Name=RD04_RS06295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06295;old_locus_tag=RD04_06285 NZ_CP010961.1 Protein Homology CDS 1284083 1284661 . + 0 ID=cds1237;Parent=gene1258;Dbxref=Genbank:WP_019248504.1;Name=WP_019248504.1;gbkey=CDS;product=protease;protein_id=WP_019248504.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1284767 1285135 . + . ID=gene1259;Name=RD04_RS06300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06300;old_locus_tag=RD04_06290 NZ_CP010961.1 Protein Homology CDS 1284767 1285135 . + 0 ID=cds1238;Parent=gene1259;Dbxref=Genbank:WP_010930418.1;Name=WP_010930418.1;gbkey=CDS;product=aryl-sulfate sulfotransferase;protein_id=WP_010930418.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1285234 1286184 . + . ID=gene1260;Name=RD04_RS06305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06305;old_locus_tag=RD04_06295 NZ_CP010961.1 Protein Homology CDS 1285234 1286184 . + 0 ID=cds1239;Parent=gene1260;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1286191 1287303 . - . ID=gene1261;Name=RD04_RS06310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06310;old_locus_tag=RD04_06300 NZ_CP010961.1 Protein Homology CDS 1286191 1287303 . - 0 ID=cds1240;Parent=gene1261;Dbxref=Genbank:WP_023994932.1;Name=WP_023994932.1;gbkey=CDS;product=class A beta-lactamase;protein_id=WP_023994932.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1287669 1287743 . - . ID=gene1262;Name=RD04_RS06315;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS06315;old_locus_tag=RD04_06305 NZ_CP010961.1 tRNAscan-SE tRNA 1287669 1287743 . - . ID=rna21;Parent=gene1262;anticodon=(pos:complement(1287708..1287710));gbkey=tRNA;product=tRNA-Arg NZ_CP010961.1 tRNAscan-SE exon 1287669 1287743 . - . ID=id26;Parent=rna21;anticodon=(pos:complement(1287708..1287710));gbkey=tRNA;product=tRNA-Arg NZ_CP010961.1 RefSeq gene 1287990 1289192 . + . ID=gene1263;Name=RD04_RS06320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06320;old_locus_tag=RD04_06310 NZ_CP010961.1 Protein Homology CDS 1287990 1289192 . + 0 ID=cds1241;Parent=gene1263;Dbxref=Genbank:WP_010930419.1;Name=WP_010930419.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930419.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1289396 1292056 . + . ID=gene1264;Name=RD04_RS06325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06325;old_locus_tag=RD04_06315 NZ_CP010961.1 Protein Homology CDS 1289396 1292056 . + 0 ID=cds1242;Parent=gene1264;Dbxref=Genbank:WP_010930420.1;Name=WP_010930420.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930420.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1292069 1295473 . + . ID=gene1265;Name=RD04_RS06330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06330;old_locus_tag=RD04_06320 NZ_CP010961.1 Protein Homology CDS 1292069 1295473 . + 0 ID=cds1243;Parent=gene1265;Dbxref=Genbank:WP_010930421.1;Name=WP_010930421.1;gbkey=CDS;product=nuclease;protein_id=WP_010930421.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1296012 1296109 . + . ID=gene1266;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=RD04_RS06335 NZ_CP010961.1 cmsearch ncRNA 1296012 1296109 . + . ID=rna22;Parent=gene1266;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;ncrna_class=SRP_RNA;product=signal recognition particle sRNA small type NZ_CP010961.1 cmsearch exon 1296012 1296109 . + . ID=id27;Parent=rna22;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;ncrna_class=SRP_RNA;product=signal recognition particle sRNA small type NZ_CP010961.1 RefSeq gene 1296276 1298366 . + . ID=gene1267;Name=RD04_RS06340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06340;old_locus_tag=RD04_06325 NZ_CP010961.1 Protein Homology CDS 1296276 1298366 . + 0 ID=cds1244;Parent=gene1267;Dbxref=Genbank:WP_010930422.1;Name=WP_010930422.1;gbkey=CDS;product=DNA polymerase III subunit gamma/tau;protein_id=WP_010930422.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1298413 1298739 . + . ID=gene1268;Name=RD04_RS06345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06345;old_locus_tag=RD04_06330 NZ_CP010961.1 Protein Homology CDS 1298413 1298739 . + 0 ID=cds1245;Parent=gene1268;Dbxref=Genbank:WP_010930423.1;Name=WP_010930423.1;gbkey=CDS;product=nucleoid-associated protein;protein_id=WP_010930423.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1298790 1299398 . + . ID=gene1269;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=RD04_RS06350;old_locus_tag=RD04_06335 NZ_CP010961.1 Protein Homology CDS 1298790 1299398 . + 0 ID=cds1246;Parent=gene1269;Dbxref=Genbank:WP_010930424.1;Name=WP_010930424.1;Note=involved in a recombinational process of DNA repair%2C independent of the recBC complex;gbkey=CDS;gene=recR;product=recombination protein RecR;protein_id=WP_010930424.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1299497 1300447 . + . ID=gene1270;Name=RD04_RS06355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06355;old_locus_tag=RD04_06340 NZ_CP010961.1 Protein Homology CDS 1299497 1300447 . + 0 ID=cds1247;Parent=gene1270;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1300517 1301281 . - . ID=gene1271;Name=RD04_RS06360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06360;old_locus_tag=RD04_06345 NZ_CP010961.1 Protein Homology CDS 1300517 1301281 . - 0 ID=cds1248;Parent=gene1271;Dbxref=Genbank:WP_010930425.1;Name=WP_010930425.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930425.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1301278 1301814 . - . ID=gene1272;Name=RD04_RS06365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06365;old_locus_tag=RD04_06350 NZ_CP010961.1 Protein Homology CDS 1301278 1301814 . - 0 ID=cds1249;Parent=gene1272;Dbxref=Genbank:WP_033446226.1;Name=WP_033446226.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446226.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1301981 1302832 . - . ID=gene1273;Name=RD04_RS06370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06370;old_locus_tag=RD04_06355 NZ_CP010961.1 Protein Homology CDS 1301981 1302832 . - 0 ID=cds1250;Parent=gene1273;Dbxref=Genbank:WP_010930427.1;Name=WP_010930427.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930427.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1302892 1303518 . + . ID=gene1274;Name=RD04_RS06375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06375;old_locus_tag=RD04_06360 NZ_CP010961.1 Protein Homology CDS 1302892 1303518 . + 0 ID=cds1251;Parent=gene1274;Dbxref=Genbank:WP_010928449.1;Name=WP_010928449.1;gbkey=CDS;product=threonylcarbamoyl-AMP synthase;protein_id=WP_010928449.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1303515 1304417 . - . ID=gene1275;Name=RD04_RS06380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06380;old_locus_tag=RD04_06365 NZ_CP010961.1 GeneMarkS+ CDS 1303515 1304417 . - 0 ID=cds1252;Parent=gene1275;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1304564 1305676 . - . ID=gene1276;Name=RD04_RS06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06385;old_locus_tag=RD04_06370 NZ_CP010961.1 Protein Homology CDS 1304564 1305676 . - 0 ID=cds1253;Parent=gene1276;Dbxref=Genbank:WP_019249265.1;Name=WP_019249265.1;gbkey=CDS;product=Tat pathway signal protein;protein_id=WP_019249265.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1305666 1306667 . - . ID=gene1277;Name=RD04_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06390;old_locus_tag=RD04_06375 NZ_CP010961.1 Protein Homology CDS 1305666 1306667 . - 0 ID=cds1254;Parent=gene1277;Dbxref=Genbank:WP_024000672.1;Name=WP_024000672.1;gbkey=CDS;product=imelysin;protein_id=WP_024000672.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1306773 1308284 . - . ID=gene1278;Name=RD04_RS06395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06395;old_locus_tag=RD04_06380 NZ_CP010961.1 Protein Homology CDS 1306773 1308284 . - 0 ID=cds1255;Parent=gene1278;Dbxref=Genbank:WP_019247498.1;Name=WP_019247498.1;gbkey=CDS;product=thiol oxidoreductase;protein_id=WP_019247498.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1308281 1309585 . - . ID=gene1279;Name=RD04_RS06400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06400;old_locus_tag=RD04_06385 NZ_CP010961.1 Protein Homology CDS 1308281 1309585 . - 0 ID=cds1256;Parent=gene1279;Dbxref=Genbank:WP_023853587.1;Name=WP_023853587.1;gbkey=CDS;product=imelysin;protein_id=WP_023853587.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1309697 1310254 . - . ID=gene1280;Name=RD04_RS06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06405;old_locus_tag=RD04_06390 NZ_CP010961.1 Protein Homology CDS 1309697 1310254 . - 0 ID=cds1257;Parent=gene1280;Dbxref=Genbank:WP_033446227.1;Name=WP_033446227.1;gbkey=CDS;product=antibiotic biosynthesis monooxygenase;protein_id=WP_033446227.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1310525 1311079 . + . ID=gene1281;Name=RD04_RS06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06410;old_locus_tag=RD04_06395 NZ_CP010961.1 Protein Homology CDS 1310525 1311079 . + 0 ID=cds1258;Parent=gene1281;Dbxref=Genbank:WP_010930432.1;Name=WP_010930432.1;gbkey=CDS;product=FMN reductase;protein_id=WP_010930432.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1311535 1311750 . - . ID=gene1282;Name=RD04_RS06415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06415;old_locus_tag=RD04_06400 NZ_CP010961.1 Protein Homology CDS 1311535 1311750 . - 0 ID=cds1259;Parent=gene1282;Dbxref=Genbank:WP_010930433.1;Name=WP_010930433.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930433.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1312005 1314602 . + . ID=gene1283;Name=RD04_RS06420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06420;old_locus_tag=RD04_06405 NZ_CP010961.1 Protein Homology CDS 1312005 1314602 . + 0 ID=cds1260;Parent=gene1283;Dbxref=Genbank:WP_033446228.1;Name=WP_033446228.1;Note=This protein performs the mismatch recognition step during the DNA repair process;gbkey=CDS;product=DNA mismatch repair protein MutS;protein_id=WP_033446228.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1314599 1315786 . + . ID=gene1284;Name=RD04_RS06425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06425;old_locus_tag=RD04_06410 NZ_CP010961.1 Protein Homology CDS 1314599 1315786 . + 0 ID=cds1261;Parent=gene1284;Dbxref=Genbank:WP_010930435.1;Name=WP_010930435.1;gbkey=CDS;product=cupin;protein_id=WP_010930435.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1316046 1316279 . + . ID=gene1285;Name=RD04_RS06430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06430 NZ_CP010961.1 GeneMarkS+ CDS 1316046 1316279 . + 0 ID=cds1262;Parent=gene1285;Dbxref=Genbank:WP_062826643.1;Name=WP_062826643.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_062826643.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1316444 1317058 . + . ID=gene1286;Name=RD04_RS06435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06435;old_locus_tag=RD04_06415 NZ_CP010961.1 Protein Homology CDS 1316444 1317058 . + 0 ID=cds1263;Parent=gene1286;Dbxref=Genbank:WP_010930436.1;Name=WP_010930436.1;gbkey=CDS;product=serotype 3 fimbrial subunit;protein_id=WP_010930436.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1317147 1318268 . - . ID=gene1287;Name=RD04_RS06440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06440;old_locus_tag=RD04_06420 NZ_CP010961.1 Protein Homology CDS 1317147 1318268 . - 0 ID=cds1264;Parent=gene1287;Dbxref=Genbank:WP_023994740.1;Name=WP_023994740.1;gbkey=CDS;product=NlpB/DapX lipoprotein;protein_id=WP_023994740.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1318286 1319191 . - . ID=gene1288;Name=RD04_RS06445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06445;old_locus_tag=RD04_06425 NZ_CP010961.1 Protein Homology CDS 1318286 1319191 . - 0 ID=cds1265;Parent=gene1288;Dbxref=Genbank:WP_033446216.1;Name=WP_033446216.1;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_033446216.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1319277 1319925 . - . ID=gene1289;Name=RD04_RS06450;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06450;old_locus_tag=RD04_06430;pseudo=true NZ_CP010961.1 Protein Homology CDS 1319277 1319925 . - 0 ID=cds1266;Parent=gene1289;Note=frameshifted;gbkey=CDS;product=peptidase M50;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1320084 1321034 . + . ID=gene1290;Name=RD04_RS06455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06455;old_locus_tag=RD04_06435 NZ_CP010961.1 Protein Homology CDS 1320084 1321034 . + 0 ID=cds1267;Parent=gene1290;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1321216 1321968 . + . ID=gene1291;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=RD04_RS06460;old_locus_tag=RD04_06440 NZ_CP010961.1 Protein Homology CDS 1321216 1321968 . + 0 ID=cds1268;Parent=gene1291;Dbxref=Genbank:WP_010930439.1;Name=WP_010930439.1;Note=similar to periplasmic-binding component of ABC transporters;gbkey=CDS;gene=glnH;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_010930439.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1322037 1322696 . + . ID=gene1292;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=RD04_RS06465;old_locus_tag=RD04_06445 NZ_CP010961.1 Protein Homology CDS 1322037 1322696 . + 0 ID=cds1269;Parent=gene1292;Dbxref=Genbank:WP_003811112.1;Name=WP_003811112.1;Note=similar to permease component of ABC transporters%3B mutations impair ability of Escherichia coli to transport and utilize glutamine;gbkey=CDS;gene=glnP;product=glutamine ABC transporter permease;protein_id=WP_003811112.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1322693 1323421 . + . ID=gene1293;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=RD04_RS06470;old_locus_tag=RD04_06450 NZ_CP010961.1 Protein Homology CDS 1322693 1323421 . + 0 ID=cds1270;Parent=gene1293;Dbxref=Genbank:WP_003811113.1;Name=WP_003811113.1;Note=similar to ATP-binding component of ABC transporters;gbkey=CDS;gene=glnQ;product=glutamine ABC transporter ATP-binding protein;protein_id=WP_003811113.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1323434 1325713 . - . ID=gene1294;Name=RD04_RS06475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06475;old_locus_tag=RD04_06455 NZ_CP010961.1 Protein Homology CDS 1323434 1325713 . - 0 ID=cds1271;Parent=gene1294;Dbxref=Genbank:WP_010930440.1;Name=WP_010930440.1;gbkey=CDS;product=guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_010930440.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1325738 1325941 . - . ID=gene1295;Name=RD04_RS06480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06480;old_locus_tag=RD04_06460 NZ_CP010961.1 Protein Homology CDS 1325738 1325941 . - 0 ID=cds1272;Parent=gene1295;Dbxref=Genbank:WP_010930441.1;Name=WP_010930441.1;gbkey=CDS;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_010930441.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1325983 1326588 . - . ID=gene1296;Name=RD04_RS06485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06485;old_locus_tag=RD04_06465 NZ_CP010961.1 Protein Homology CDS 1325983 1326588 . - 0 ID=cds1273;Parent=gene1296;Dbxref=Genbank:WP_033446217.1;Name=WP_033446217.1;gbkey=CDS;product=guanylate kinase;protein_id=WP_033446217.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1326751 1327668 . - . ID=gene1297;Name=RD04_RS06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06490;old_locus_tag=RD04_06470 NZ_CP010961.1 Protein Homology CDS 1326751 1327668 . - 0 ID=cds1274;Parent=gene1297;Dbxref=Genbank:WP_010930443.1;Name=WP_010930443.1;gbkey=CDS;product=cytochrome c;protein_id=WP_010930443.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1327665 1328378 . - . ID=gene1298;Name=RD04_RS06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06495;old_locus_tag=RD04_06475 NZ_CP010961.1 Protein Homology CDS 1327665 1328378 . - 0 ID=cds1275;Parent=gene1298;Dbxref=Genbank:WP_010930444.1;Name=WP_010930444.1;gbkey=CDS;product=cytochrome c;protein_id=WP_010930444.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1328616 1329386 . + . ID=gene1299;Name=RD04_RS06500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06500;old_locus_tag=RD04_06480 NZ_CP010961.1 Protein Homology CDS 1328616 1329386 . + 0 ID=cds1276;Parent=gene1299;Dbxref=Genbank:WP_003811135.1;Name=WP_003811135.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_003811135.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1329391 1329990 . - . ID=gene1300;Name=RD04_RS06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06505;old_locus_tag=RD04_06485 NZ_CP010961.1 Protein Homology CDS 1329391 1329990 . - 0 ID=cds1277;Parent=gene1300;Dbxref=Genbank:WP_003811137.1;Name=WP_003811137.1;gbkey=CDS;product=exported protein;protein_id=WP_003811137.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1330235 1331725 . + . ID=gene1301;Name=RD04_RS06510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06510;old_locus_tag=RD04_06490 NZ_CP010961.1 Protein Homology CDS 1330235 1331725 . + 0 ID=cds1278;Parent=gene1301;Dbxref=Genbank:WP_003811138.1;Name=WP_003811138.1;gbkey=CDS;product=AMP nucleosidase;protein_id=WP_003811138.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1331784 1332068 . - . ID=gene1302;Name=RD04_RS06515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06515;old_locus_tag=RD04_06495 NZ_CP010961.1 Protein Homology CDS 1331784 1332068 . - 0 ID=cds1279;Parent=gene1302;Dbxref=Genbank:WP_010926696.1;Name=WP_010926696.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010926696.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1332065 1332193 . - . ID=gene1303;Name=RD04_RS06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06520;old_locus_tag=RD04_06500 NZ_CP010961.1 Protein Homology CDS 1332065 1332193 . - 0 ID=cds1280;Parent=gene1303;Dbxref=Genbank:WP_010928840.1;Name=WP_010928840.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010928840.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1332206 1332361 . - . ID=gene1304;Name=RD04_RS06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06525;old_locus_tag=RD04_06505 NZ_CP010961.1 Protein Homology CDS 1332206 1332361 . - 0 ID=cds1281;Parent=gene1304;Dbxref=Genbank:WP_010930445.1;Name=WP_010930445.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930445.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1332634 1333560 . - . ID=gene1305;Name=RD04_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06530;old_locus_tag=RD04_06510 NZ_CP010961.1 Protein Homology CDS 1332634 1333560 . - 0 ID=cds1282;Parent=gene1305;Dbxref=Genbank:WP_003811148.1;Name=WP_003811148.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003811148.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1333697 1334437 . + . ID=gene1306;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=RD04_RS06535;old_locus_tag=RD04_06515 NZ_CP010961.1 Protein Homology CDS 1333697 1334437 . + 0 ID=cds1283;Parent=gene1306;Dbxref=Genbank:WP_003811149.1;Name=WP_003811149.1;Note=RNase PH%3B tRNA nucleotidyltransferase%3B forms hexamers in Bacillus subtilis%3B phosphoroltic 3'-5' exoribonuclease%3B involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs;gbkey=CDS;gene=rph;product=ribonuclease PH;protein_id=WP_003811149.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1334604 1335980 . - . ID=gene1307;Name=RD04_RS06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06540;old_locus_tag=RD04_06520 NZ_CP010961.1 Protein Homology CDS 1334604 1335980 . - 0 ID=cds1284;Parent=gene1307;Dbxref=Genbank:WP_010930446.1;Name=WP_010930446.1;gbkey=CDS;product=2-methylcitrate dehydratase;protein_id=WP_010930446.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1336162 1337067 . + . ID=gene1308;Name=RD04_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06545;old_locus_tag=RD04_06525 NZ_CP010961.1 Protein Homology CDS 1336162 1337067 . + 0 ID=cds1285;Parent=gene1308;Dbxref=Genbank:WP_003811152.1;Name=WP_003811152.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003811152.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1338719 1340521 . - . ID=gene1309;Name=RD04_RS06550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06550;old_locus_tag=RD04_06530 NZ_CP010961.1 Protein Homology CDS 1338719 1340521 . - 0 ID=cds1286;Parent=gene1309;Dbxref=Genbank:WP_010930448.1;Name=WP_010930448.1;gbkey=CDS;product=diguanylate phosphodiesterase;protein_id=WP_010930448.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1340648 1341289 . + . ID=gene1310;Name=RD04_RS06555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06555;old_locus_tag=RD04_06535 NZ_CP010961.1 Protein Homology CDS 1340648 1341289 . + 0 ID=cds1287;Parent=gene1310;Dbxref=Genbank:WP_010930449.1;Name=WP_010930449.1;gbkey=CDS;product=non-canonical purine NTP pyrophosphatase;protein_id=WP_010930449.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1341388 1342338 . + . ID=gene1311;Name=RD04_RS06560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06560;old_locus_tag=RD04_06540 NZ_CP010961.1 Protein Homology CDS 1341388 1342338 . + 0 ID=cds1288;Parent=gene1311;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1342360 1343580 . + . ID=gene1312;Name=RD04_RS06565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06565;old_locus_tag=RD04_06545 NZ_CP010961.1 Protein Homology CDS 1342360 1343580 . + 0 ID=cds1289;Parent=gene1312;Dbxref=Genbank:WP_010930450.1;Name=WP_010930450.1;Note=catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_010930450.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1343766 1345178 . + . ID=gene1313;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=RD04_RS06570;old_locus_tag=RD04_06550 NZ_CP010961.1 Protein Homology CDS 1343766 1345178 . + 0 ID=cds1290;Parent=gene1313;Dbxref=Genbank:WP_003811164.1;Name=WP_003811164.1;Note=forms a homododecamer%3B forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate%3B also functions in the assimilation of ammonia%3B highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues%3B addition of adenylyl groups results in inactivation of the enzyme;gbkey=CDS;gene=glnA;product=type I glutamate--ammonia ligase;protein_id=WP_003811164.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1345242 1346309 . + . ID=gene1314;Name=RD04_RS06575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06575;old_locus_tag=RD04_06555 NZ_CP010961.1 Protein Homology CDS 1345242 1346309 . + 0 ID=cds1291;Parent=gene1314;Dbxref=Genbank:WP_003811167.1;Name=WP_003811167.1;gbkey=CDS;product=PAS domain-containing sensor histidine kinase;protein_id=WP_003811167.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1346309 1347796 . + . ID=gene1315;Name=RD04_RS06580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06580;old_locus_tag=RD04_06560 NZ_CP010961.1 Protein Homology CDS 1346309 1347796 . + 0 ID=cds1292;Parent=gene1315;Dbxref=Genbank:WP_010930451.1;Name=WP_010930451.1;gbkey=CDS;product=nitrogen regulation protein NR(I);protein_id=WP_010930451.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1347806 1348750 . - . ID=gene1316;Name=RD04_RS06585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06585;old_locus_tag=RD04_06565 NZ_CP010961.1 Protein Homology CDS 1347806 1348750 . - 0 ID=cds1293;Parent=gene1316;Dbxref=Genbank:WP_010930452.1;Name=WP_010930452.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930452.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1348910 1349608 . + . ID=gene1317;Name=RD04_RS06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06590;old_locus_tag=RD04_06570 NZ_CP010961.1 Protein Homology CDS 1348910 1349608 . + 0 ID=cds1294;Parent=gene1317;Dbxref=Genbank:WP_003811176.1;Name=WP_003811176.1;gbkey=CDS;product=quercetin 2%2C3-dioxygenase;protein_id=WP_003811176.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1349686 1350591 . + . ID=gene1318;Name=RD04_RS06595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06595;old_locus_tag=RD04_06575 NZ_CP010961.1 Protein Homology CDS 1349686 1350591 . + 0 ID=cds1295;Parent=gene1318;Dbxref=Genbank:WP_010930453.1;Name=WP_010930453.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930453.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1350611 1351513 . - . ID=gene1319;Name=RD04_RS06600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06600;old_locus_tag=RD04_06580 NZ_CP010961.1 GeneMarkS+ CDS 1350611 1351513 . - 0 ID=cds1296;Parent=gene1319;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1351660 1352454 . - . ID=gene1320;Name=RD04_RS06605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06605;old_locus_tag=RD04_06585 NZ_CP010961.1 Protein Homology CDS 1351660 1352454 . - 0 ID=cds1297;Parent=gene1320;Dbxref=Genbank:WP_019248220.1;Name=WP_019248220.1;gbkey=CDS;product=sulfate ABC transporter;protein_id=WP_019248220.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1352459 1354129 . - . ID=gene1321;Name=RD04_RS06610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06610;old_locus_tag=RD04_06590 NZ_CP010961.1 Protein Homology CDS 1352459 1354129 . - 0 ID=cds1298;Parent=gene1321;Dbxref=Genbank:WP_010930454.1;Name=WP_010930454.1;gbkey=CDS;product=iron ABC transporter permease;protein_id=WP_010930454.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1354253 1355302 . - . ID=gene1322;Name=RD04_RS06615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06615;old_locus_tag=RD04_06595 NZ_CP010961.1 Protein Homology CDS 1354253 1355302 . - 0 ID=cds1299;Parent=gene1322;Dbxref=Genbank:WP_010930455.1;Name=WP_010930455.1;gbkey=CDS;product=iron ABC transporter substrate-binding protein;protein_id=WP_010930455.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1355624 1356400 . + . ID=gene1323;Name=RD04_RS06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06620;old_locus_tag=RD04_06600 NZ_CP010961.1 Protein Homology CDS 1355624 1356400 . + 0 ID=cds1300;Parent=gene1323;Dbxref=Genbank:WP_003811187.1;Name=WP_003811187.1;gbkey=CDS;product=ferredoxin--NADP(+) reductase;protein_id=WP_003811187.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1356465 1357367 . - . ID=gene1324;Name=RD04_RS06625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06625;old_locus_tag=RD04_06605 NZ_CP010961.1 Protein Homology CDS 1356465 1357367 . - 0 ID=cds1301;Parent=gene1324;Dbxref=Genbank:WP_010930456.1;Name=WP_010930456.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930456.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1357469 1358589 . + . ID=gene1325;Name=RD04_RS06630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06630;old_locus_tag=RD04_06610;pseudo=true NZ_CP010961.1 Protein Homology CDS 1357469 1358589 . + 0 ID=cds1302;Parent=gene1325;Note=frameshifted;gbkey=CDS;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1358661 1359464 . + . ID=gene1326;Name=dkgB;gbkey=Gene;gene=dkgB;gene_biotype=protein_coding;locus_tag=RD04_RS06635;old_locus_tag=RD04_06615 NZ_CP010961.1 Protein Homology CDS 1358661 1359464 . + 0 ID=cds1303;Parent=gene1326;Dbxref=Genbank:WP_010930457.1;Name=WP_010930457.1;Note=catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid;gbkey=CDS;gene=dkgB;product=2%2C5-diketo-D-gluconate reductase B;protein_id=WP_010930457.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1359628 1361981 . + . ID=gene1327;Name=RD04_RS06640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06640;old_locus_tag=RD04_06620;pseudo=true NZ_CP010961.1 Protein Homology CDS 1359628 1361981 . + 0 ID=cds1304;Parent=gene1327;Note=frameshifted%3B internal stop;gbkey=CDS;product=autotransporter outer membrane beta-barrel domain-containing protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1362158 1362544 . + . ID=gene1328;Name=RD04_RS06645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06645;old_locus_tag=RD04_06625 NZ_CP010961.1 Protein Homology CDS 1362158 1362544 . + 0 ID=cds1305;Parent=gene1328;Dbxref=Genbank:WP_010930458.1;Name=WP_010930458.1;gbkey=CDS;product=reactive intermediate/imine deaminase;protein_id=WP_010930458.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1362560 1364650 . + . ID=gene1329;Name=RD04_RS06650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06650;old_locus_tag=RD04_06630 NZ_CP010961.1 Protein Homology CDS 1362560 1364650 . + 0 ID=cds1306;Parent=gene1329;Dbxref=Genbank:WP_033446218.1;Name=WP_033446218.1;gbkey=CDS;product=ATP-dependent DNA helicase RecG;protein_id=WP_033446218.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1364702 1365655 . + . ID=gene1330;Name=RD04_RS06655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06655;old_locus_tag=RD04_06635 NZ_CP010961.1 Protein Homology CDS 1364702 1365655 . + 0 ID=cds1307;Parent=gene1330;Dbxref=Genbank:WP_003811203.1;Name=WP_003811203.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003811203.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1365670 1366557 . - . ID=gene1331;Name=RD04_RS06660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06660;old_locus_tag=RD04_06640 NZ_CP010961.1 Protein Homology CDS 1365670 1366557 . - 0 ID=cds1308;Parent=gene1331;Dbxref=Genbank:WP_010930460.1;Name=WP_010930460.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930460.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1366695 1368221 . + . ID=gene1332;Name=RD04_RS06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06665;old_locus_tag=RD04_06645 NZ_CP010961.1 Protein Homology CDS 1366695 1368221 . + 0 ID=cds1309;Parent=gene1332;Dbxref=Genbank:WP_010930461.1;Name=WP_010930461.1;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_010930461.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1368320 1368820 . + . ID=gene1333;Name=RD04_RS06670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06670;old_locus_tag=RD04_06650 NZ_CP010961.1 Protein Homology CDS 1368320 1368820 . + 0 ID=cds1310;Parent=gene1333;Dbxref=Genbank:WP_003811209.1;Name=WP_003811209.1;gbkey=CDS;product=DNA starvation/stationary phase protection protein;protein_id=WP_003811209.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1369144 1371099 . - . ID=gene1334;Name=RD04_RS06675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06675;old_locus_tag=RD04_06655 NZ_CP010961.1 Protein Homology CDS 1369144 1371099 . - 0 ID=cds1311;Parent=gene1334;Dbxref=Genbank:WP_019247170.1;Name=WP_019247170.1;gbkey=CDS;product=capsular polysaccharide biosynthesis protein;protein_id=WP_019247170.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1371267 1373351 . - . ID=gene1335;Name=RD04_RS06680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06680;old_locus_tag=RD04_06660 NZ_CP010961.1 Protein Homology CDS 1371267 1373351 . - 0 ID=cds1312;Parent=gene1335;Dbxref=Genbank:WP_050818139.1;Name=WP_050818139.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_050818139.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1373378 1373803 . - . ID=gene1336;Name=RD04_RS06685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06685;old_locus_tag=RD04_06665 NZ_CP010961.1 Protein Homology CDS 1373378 1373803 . - 0 ID=cds1313;Parent=gene1336;Dbxref=Genbank:WP_033446230.1;Name=WP_033446230.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446230.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1375019 1375789 . + . ID=gene1337;Name=RD04_RS06690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06690;old_locus_tag=RD04_06670 NZ_CP010961.1 Protein Homology CDS 1375019 1375789 . + 0 ID=cds1314;Parent=gene1337;Dbxref=Genbank:WP_010930466.1;Name=WP_010930466.1;gbkey=CDS;product=polyhydroxyalkanoate synthesis repressor PhaR;protein_id=WP_010930466.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1375789 1376529 . + . ID=gene1338;Name=RD04_RS06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06695;old_locus_tag=RD04_06675 NZ_CP010961.1 Protein Homology CDS 1375789 1376529 . + 0 ID=cds1315;Parent=gene1338;Dbxref=Genbank:WP_014486073.1;Name=WP_014486073.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_014486073.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1376571 1377740 . + . ID=gene1339;Name=RD04_RS06700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06700;old_locus_tag=RD04_06680 NZ_CP010961.1 Protein Homology CDS 1376571 1377740 . + 0 ID=cds1316;Parent=gene1339;Dbxref=Genbank:WP_010930468.1;Name=WP_010930468.1;gbkey=CDS;product=capsule polysaccharide transporter;protein_id=WP_010930468.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1377772 1379856 . + . ID=gene1340;Name=tviE;gbkey=Gene;gene=tviE;gene_biotype=protein_coding;locus_tag=RD04_RS06705;old_locus_tag=RD04_06685 NZ_CP010961.1 Protein Homology CDS 1377772 1379856 . + 0 ID=cds1317;Parent=gene1340;Dbxref=Genbank:WP_010930469.1;Name=WP_010930469.1;Note=with TviD may be involved in polymerization of the Vi capsular poysaccharide;gbkey=CDS;gene=tviE;product=capsular polysaccharide biosynthesis protein;protein_id=WP_010930469.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1379853 1380743 . + . ID=gene1341;Name=RD04_RS06710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06710;old_locus_tag=RD04_06690 NZ_CP010961.1 Protein Homology CDS 1379853 1380743 . + 0 ID=cds1318;Parent=gene1341;Dbxref=Genbank:WP_003811224.1;Name=WP_003811224.1;gbkey=CDS;product=capsular polysaccharide biosynthesis protein;protein_id=WP_003811224.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1380740 1381837 . + . ID=gene1342;Name=RD04_RS06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06715;old_locus_tag=RD04_06695 NZ_CP010961.1 Protein Homology CDS 1380740 1381837 . + 0 ID=cds1319;Parent=gene1342;Dbxref=Genbank:WP_010930470.1;Name=WP_010930470.1;gbkey=CDS;product=capsular polysaccharide export protein;protein_id=WP_010930470.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1381860 1383149 . + . ID=gene1343;Name=RD04_RS06720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06720;old_locus_tag=RD04_06700 NZ_CP010961.1 Protein Homology CDS 1381860 1383149 . + 0 ID=cds1320;Parent=gene1343;Dbxref=Genbank:WP_010930471.1;Name=WP_010930471.1;gbkey=CDS;product=nucleotide sugar dehydrogenase;protein_id=WP_010930471.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1383161 1384186 . + . ID=gene1344;Name=RD04_RS06725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06725;old_locus_tag=RD04_06705 NZ_CP010961.1 Protein Homology CDS 1383161 1384186 . + 0 ID=cds1321;Parent=gene1344;Dbxref=Genbank:WP_010930472.1;Name=WP_010930472.1;gbkey=CDS;product=capsular polysaccharide biosynthesis protein;protein_id=WP_010930472.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1384183 1386240 . + . ID=gene1345;Name=RD04_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06730;old_locus_tag=RD04_06710 NZ_CP010961.1 Protein Homology CDS 1384183 1386240 . + 0 ID=cds1322;Parent=gene1345;Dbxref=Genbank:WP_010930473.1;Name=WP_010930473.1;gbkey=CDS;product=capsular polysaccharide export protein;protein_id=WP_010930473.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1386254 1387429 . + . ID=gene1346;Name=RD04_RS06735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06735;old_locus_tag=RD04_06715 NZ_CP010961.1 Protein Homology CDS 1386254 1387429 . + 0 ID=cds1323;Parent=gene1346;Dbxref=Genbank:WP_023852812.1;Name=WP_023852812.1;gbkey=CDS;product=capsule polysaccharide biosynthesis protein;protein_id=WP_023852812.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1387559 1388461 . + . ID=gene1347;Name=RD04_RS06740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06740;old_locus_tag=RD04_06720 NZ_CP010961.1 GeneMarkS+ CDS 1387559 1388461 . + 0 ID=cds1324;Parent=gene1347;Dbxref=Genbank:WP_039250367.1;Name=WP_039250367.1;gbkey=CDS;product=integrase;protein_id=WP_039250367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1388520 1389293 . + . ID=gene1348;Name=RD04_RS06745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06745;old_locus_tag=RD04_06725 NZ_CP010961.1 Protein Homology CDS 1388520 1389293 . + 0 ID=cds1325;Parent=gene1348;Dbxref=Genbank:WP_010930486.1;Name=WP_010930486.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010930486.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1389286 1390842 . + . ID=gene1349;Name=RD04_RS06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06750;old_locus_tag=RD04_06730 NZ_CP010961.1 Protein Homology CDS 1389286 1390842 . + 0 ID=cds1326;Parent=gene1349;Dbxref=Genbank:WP_014486074.1;Name=WP_014486074.1;gbkey=CDS;product=capsular polysaccharide biosynthesis protein;protein_id=WP_014486074.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1390839 1391789 . - . ID=gene1350;Name=RD04_RS06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06755;old_locus_tag=RD04_06735 NZ_CP010961.1 Protein Homology CDS 1390839 1391789 . - 0 ID=cds1327;Parent=gene1350;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1392130 1393140 . + . ID=gene1351;Name=RD04_RS06760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06760;old_locus_tag=RD04_06740;partial=true;pseudo=true;start_range=.,1392130 NZ_CP010961.1 Protein Homology CDS 1392130 1393140 . + 0 ID=cds1328;Parent=gene1351;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=pyridine nucleotide-disulfide oxidoreductase;pseudo=true;start_range=.,1392130;transl_table=11 NZ_CP010961.1 RefSeq gene 1393116 1393718 . - . ID=gene1352;Name=RD04_RS06765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06765;old_locus_tag=RD04_06745 NZ_CP010961.1 Protein Homology CDS 1393116 1393718 . - 0 ID=cds1329;Parent=gene1352;Dbxref=Genbank:WP_003810741.1;Name=WP_003810741.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_003810741.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1393958 1394659 . - . ID=gene1353;Name=RD04_RS06770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06770;old_locus_tag=RD04_06750 NZ_CP010961.1 Protein Homology CDS 1393958 1394659 . - 0 ID=cds1330;Parent=gene1353;Dbxref=Genbank:WP_003810743.1;Name=WP_003810743.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003810743.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1394653 1395435 . - . ID=gene1354;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=RD04_RS06775;old_locus_tag=RD04_06755 NZ_CP010961.1 Protein Homology CDS 1394653 1395435 . - 0 ID=cds1331;Parent=gene1354;Dbxref=Genbank:WP_003816696.1;Name=WP_003816696.1;Note=Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livG;product=ABC transporter ATP-binding protein;protein_id=WP_003816696.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1395432 1395629 . - . ID=gene1355;Name=RD04_RS06780;end_range=1395629,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06780;old_locus_tag=RD04_06760;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 1395432 1395629 . - 0 ID=cds1332;Parent=gene1355;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=1395629,.;gbkey=CDS;partial=true;product=branched-chain amino acid ABC transporter permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1395620 1396570 . - . ID=gene1356;Name=RD04_RS06785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06785;old_locus_tag=RD04_06765 NZ_CP010961.1 Protein Homology CDS 1395620 1396570 . - 0 ID=cds1333;Parent=gene1356;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1396669 1397406 . - . ID=gene1357;Name=RD04_RS06790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06790;old_locus_tag=RD04_06770 NZ_CP010961.1 Protein Homology CDS 1396669 1397406 . - 0 ID=cds1334;Parent=gene1357;Dbxref=Genbank:WP_010930483.1;Name=WP_010930483.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930483.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1397596 1398354 . - . ID=gene1358;Name=RD04_RS06795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06795;old_locus_tag=RD04_06775 NZ_CP010961.1 Protein Homology CDS 1397596 1398354 . - 0 ID=cds1335;Parent=gene1358;Dbxref=Genbank:WP_010926609.1;Name=WP_010926609.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_010926609.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1398401 1399390 . - . ID=gene1359;Name=RD04_RS06800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06800;old_locus_tag=RD04_06780 NZ_CP010961.1 Protein Homology CDS 1398401 1399390 . - 0 ID=cds1336;Parent=gene1359;Dbxref=Genbank:WP_010930482.1;Name=WP_010930482.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010930482.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1399568 1400536 . - . ID=gene1360;Name=RD04_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06805;old_locus_tag=RD04_06785 NZ_CP010961.1 Protein Homology CDS 1399568 1400536 . - 0 ID=cds1337;Parent=gene1360;Dbxref=Genbank:WP_010930481.1;Name=WP_010930481.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930481.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1401023 1402020 . + . ID=gene1361;Name=RD04_RS06810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06810;old_locus_tag=RD04_06790;pseudo=true NZ_CP010961.1 Protein Homology CDS 1401023 1402020 . + 0 ID=cds1338;Parent=gene1361;Note=frameshifted;gbkey=CDS;product=sulfatase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1402076 1403044 . + . ID=gene1362;Name=RD04_RS06815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06815;old_locus_tag=RD04_06795 NZ_CP010961.1 Protein Homology CDS 1402076 1403044 . + 0 ID=cds1339;Parent=gene1362;Dbxref=Genbank:WP_010930480.1;Name=WP_010930480.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930480.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1403053 1403994 . + . ID=gene1363;Name=RD04_RS06820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06820;old_locus_tag=RD04_06800 NZ_CP010961.1 Protein Homology CDS 1403053 1403994 . + 0 ID=cds1340;Parent=gene1363;Dbxref=Genbank:WP_010930479.1;Name=WP_010930479.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930479.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1404468 1405478 . + . ID=gene1364;Name=RD04_RS06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06825;old_locus_tag=RD04_06805 NZ_CP010961.1 Protein Homology CDS 1404468 1405478 . + 0 ID=cds1341;Parent=gene1364;Dbxref=Genbank:WP_010930478.1;Name=WP_010930478.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930478.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1405469 1406983 . + . ID=gene1365;Name=RD04_RS06830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06830;old_locus_tag=RD04_06810 NZ_CP010961.1 Protein Homology CDS 1405469 1406983 . + 0 ID=cds1342;Parent=gene1365;Dbxref=Genbank:WP_010930477.1;Name=WP_010930477.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930477.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1406980 1408326 . + . ID=gene1366;Name=RD04_RS06835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06835;old_locus_tag=RD04_06815 NZ_CP010961.1 Protein Homology CDS 1406980 1408326 . + 0 ID=cds1343;Parent=gene1366;Dbxref=Genbank:WP_010930476.1;Name=WP_010930476.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930476.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1408329 1409363 . + . ID=gene1367;Name=RD04_RS06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06840;old_locus_tag=RD04_06820 NZ_CP010961.1 Protein Homology CDS 1408329 1409363 . + 0 ID=cds1344;Parent=gene1367;Dbxref=Genbank:WP_010930475.1;Name=WP_010930475.1;gbkey=CDS;product=haloacid dehalogenase;protein_id=WP_010930475.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1409413 1411038 . + . ID=gene1368;Name=RD04_RS06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06845;old_locus_tag=RD04_06825 NZ_CP010961.1 Protein Homology CDS 1409413 1411038 . + 0 ID=cds1345;Parent=gene1368;Dbxref=Genbank:WP_023852967.1;Name=WP_023852967.1;gbkey=CDS;product=type I phosphodiesterase/nucleotide pyrophosphatase;protein_id=WP_023852967.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1411132 1411611 . + . ID=gene1369;Name=RD04_RS06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06850;old_locus_tag=RD04_06830 NZ_CP010961.1 GeneMarkS+ CDS 1411132 1411611 . + 0 ID=cds1346;Parent=gene1369;Dbxref=Genbank:WP_023994759.1;Name=WP_023994759.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023994759.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1411591 1412493 . - . ID=gene1370;Name=RD04_RS06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06855;old_locus_tag=RD04_06835 NZ_CP010961.1 GeneMarkS+ CDS 1411591 1412493 . - 0 ID=cds1347;Parent=gene1370;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1412646 1413593 . + . ID=gene1371;Name=RD04_RS06860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06860;old_locus_tag=RD04_06840 NZ_CP010961.1 Protein Homology CDS 1412646 1413593 . + 0 ID=cds1348;Parent=gene1371;Dbxref=Genbank:WP_010930487.1;Name=WP_010930487.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930487.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1413647 1415461 . - . ID=gene1372;Name=RD04_RS06865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06865;old_locus_tag=RD04_06845 NZ_CP010961.1 Protein Homology CDS 1413647 1415461 . - 0 ID=cds1349;Parent=gene1372;Dbxref=Genbank:WP_019247865.1;Name=WP_019247865.1;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_019247865.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1415454 1416128 . - . ID=gene1373;Name=RD04_RS06870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06870;old_locus_tag=RD04_06850 NZ_CP010961.1 Protein Homology CDS 1415454 1416128 . - 0 ID=cds1350;Parent=gene1373;Dbxref=Genbank:WP_010930489.1;Name=WP_010930489.1;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_010930489.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1416258 1419332 . + . ID=gene1374;Name=RD04_RS06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06875;old_locus_tag=RD04_06855 NZ_CP010961.1 Protein Homology CDS 1416258 1419332 . + 0 ID=cds1351;Parent=gene1374;Dbxref=Genbank:WP_023995112.1;Name=WP_023995112.1;gbkey=CDS;product=outer membrane autotransporter barrel domain protein;protein_id=WP_023995112.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1419346 1419645 . - . ID=gene1375;Name=RD04_RS06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06880;old_locus_tag=RD04_06860 NZ_CP010961.1 Protein Homology CDS 1419346 1419645 . - 0 ID=cds1352;Parent=gene1375;Dbxref=Genbank:WP_019247905.1;Name=WP_019247905.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_019247905.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1419648 1419845 . - . ID=gene1376;Name=RD04_RS06885;end_range=1419845,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06885;old_locus_tag=RD04_06865;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 1419648 1419845 . - 0 ID=cds1353;Parent=gene1376;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=1419845,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1419960 1420583 . - . ID=gene1377;Name=RD04_RS06890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06890;old_locus_tag=RD04_06870 NZ_CP010961.1 Protein Homology CDS 1419960 1420583 . - 0 ID=cds1354;Parent=gene1377;Dbxref=Genbank:WP_010930492.1;Name=WP_010930492.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_010930492.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1420827 1421696 . + . ID=gene1378;Name=RD04_RS06895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06895;old_locus_tag=RD04_06875 NZ_CP010961.1 Protein Homology CDS 1420827 1421696 . + 0 ID=cds1355;Parent=gene1378;Dbxref=Genbank:WP_010930493.1;Name=WP_010930493.1;gbkey=CDS;product=alpha-ketoglutarate-dependent 2%2C4-dichlorophenoxyacetate dioxygenase;protein_id=WP_010930493.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1421674 1422486 . - . ID=gene1379;Name=RD04_RS06900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06900;old_locus_tag=RD04_06880 NZ_CP010961.1 Protein Homology CDS 1421674 1422486 . - 0 ID=cds1356;Parent=gene1379;Dbxref=Genbank:WP_019247908.1;Name=WP_019247908.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_019247908.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1422704 1423630 . - . ID=gene1380;Name=RD04_RS06905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06905;old_locus_tag=RD04_06885 NZ_CP010961.1 Protein Homology CDS 1422704 1423630 . - 0 ID=cds1357;Parent=gene1380;Dbxref=Genbank:WP_019247909.1;Name=WP_019247909.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247909.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1423743 1424522 . - . ID=gene1381;Name=RD04_RS06910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06910;old_locus_tag=RD04_06890 NZ_CP010961.1 Protein Homology CDS 1423743 1424522 . - 0 ID=cds1358;Parent=gene1381;Dbxref=Genbank:WP_019247910.1;Name=WP_019247910.1;gbkey=CDS;product=3-oxoacyl-ACP reductase;protein_id=WP_019247910.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1424513 1425709 . - . ID=gene1382;Name=RD04_RS06915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06915;old_locus_tag=RD04_06895 NZ_CP010961.1 Protein Homology CDS 1424513 1425709 . - 0 ID=cds1359;Parent=gene1382;Dbxref=Genbank:WP_010930497.1;Name=WP_010930497.1;gbkey=CDS;product=alpha-hydroxy-acid oxidizing enzyme;protein_id=WP_010930497.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1425740 1426690 . - . ID=gene1383;Name=RD04_RS06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06920;old_locus_tag=RD04_06900 NZ_CP010961.1 Protein Homology CDS 1425740 1426690 . - 0 ID=cds1360;Parent=gene1383;Dbxref=Genbank:WP_010930498.1;Name=WP_010930498.1;gbkey=CDS;product=hydrolase;protein_id=WP_010930498.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1426912 1427601 . + . ID=gene1384;Name=RD04_RS06925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06925;old_locus_tag=RD04_06905 NZ_CP010961.1 Protein Homology CDS 1426912 1427601 . + 0 ID=cds1361;Parent=gene1384;Dbxref=Genbank:WP_010930499.1;Name=WP_010930499.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_010930499.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1427666 1428421 . + . ID=gene1385;Name=RD04_RS06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06930;old_locus_tag=RD04_06910 NZ_CP010961.1 Protein Homology CDS 1427666 1428421 . + 0 ID=cds1362;Parent=gene1385;Dbxref=Genbank:WP_010930500.1;Name=WP_010930500.1;gbkey=CDS;product=3-oxoacyl-ACP reductase;protein_id=WP_010930500.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1428473 1429465 . + . ID=gene1386;Name=RD04_RS06935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06935;old_locus_tag=RD04_06915 NZ_CP010961.1 Protein Homology CDS 1428473 1429465 . + 0 ID=cds1363;Parent=gene1386;Dbxref=Genbank:WP_010930501.1;Name=WP_010930501.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930501.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1429475 1430428 . - . ID=gene1387;Name=RD04_RS06940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06940;old_locus_tag=RD04_06920 NZ_CP010961.1 Protein Homology CDS 1429475 1430428 . - 0 ID=cds1364;Parent=gene1387;Dbxref=Genbank:WP_010930502.1;Name=WP_010930502.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930502.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1430544 1431506 . + . ID=gene1388;Name=RD04_RS06945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06945;old_locus_tag=RD04_06925 NZ_CP010961.1 Protein Homology CDS 1430544 1431506 . + 0 ID=cds1365;Parent=gene1388;Dbxref=Genbank:WP_003811538.1;Name=WP_003811538.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003811538.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1431521 1432911 . + . ID=gene1389;Name=RD04_RS06950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06950;old_locus_tag=RD04_06930;pseudo=true NZ_CP010961.1 Protein Homology CDS 1431521 1432911 . + 0 ID=cds1366;Parent=gene1389;Note=frameshifted;gbkey=CDS;product=arylsulfatase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1432908 1433336 . + . ID=gene1390;Name=RD04_RS06955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06955;old_locus_tag=RD04_06935 NZ_CP010961.1 Protein Homology CDS 1432908 1433336 . + 0 ID=cds1367;Parent=gene1390;Dbxref=Genbank:WP_019249376.1;Name=WP_019249376.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019249376.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1433333 1434283 . - . ID=gene1391;Name=RD04_RS06960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06960;old_locus_tag=RD04_06940 NZ_CP010961.1 Protein Homology CDS 1433333 1434283 . - 0 ID=cds1368;Parent=gene1391;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1434392 1434580 . + . ID=gene1392;Name=RD04_RS06965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06965;old_locus_tag=RD04_06945 NZ_CP010961.1 GeneMarkS+ CDS 1434392 1434580 . + 0 ID=cds1369;Parent=gene1392;Dbxref=Genbank:WP_033455115.1;Name=WP_033455115.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033455115.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1434577 1435299 . - . ID=gene1393;Name=RD04_RS06970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06970;old_locus_tag=RD04_06950 NZ_CP010961.1 Protein Homology CDS 1434577 1435299 . - 0 ID=cds1370;Parent=gene1393;Dbxref=Genbank:WP_010930503.1;Name=WP_010930503.1;gbkey=CDS;product=arsenical resistance protein ArsH;protein_id=WP_010930503.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1435292 1435714 . - . ID=gene1394;Name=RD04_RS06975;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06975;old_locus_tag=RD04_06955;pseudo=true NZ_CP010961.1 Protein Homology CDS 1435292 1435714 . - 0 ID=cds1371;Parent=gene1394;Note=internal stop;gbkey=CDS;product=arsenate reductase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1435738 1436924 . - . ID=gene1395;Name=RD04_RS06980;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS06980;old_locus_tag=RD04_06960;pseudo=true NZ_CP010961.1 Protein Homology CDS 1435738 1436924 . - 0 ID=cds1372;Parent=gene1395;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1436928 1437278 . - . ID=gene1396;Name=RD04_RS06985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06985;old_locus_tag=RD04_06965 NZ_CP010961.1 Protein Homology CDS 1436928 1437278 . - 0 ID=cds1373;Parent=gene1396;Dbxref=Genbank:WP_010930505.1;Name=WP_010930505.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010930505.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1437512 1438924 . - . ID=gene1397;Name=RD04_RS06990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06990;old_locus_tag=RD04_06970 NZ_CP010961.1 Protein Homology CDS 1437512 1438924 . - 0 ID=cds1374;Parent=gene1397;Dbxref=Genbank:WP_019247199.1;Name=WP_019247199.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247199.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1439028 1439999 . + . ID=gene1398;Name=RD04_RS06995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS06995;old_locus_tag=RD04_06975 NZ_CP010961.1 Protein Homology CDS 1439028 1439999 . + 0 ID=cds1375;Parent=gene1398;Dbxref=Genbank:WP_010930506.1;Name=WP_010930506.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930506.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1440013 1440726 . + . ID=gene1399;Name=RD04_RS07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07000;old_locus_tag=RD04_06980 NZ_CP010961.1 Protein Homology CDS 1440013 1440726 . + 0 ID=cds1376;Parent=gene1399;Dbxref=Genbank:WP_010930507.1;Name=WP_010930507.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_010930507.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1440731 1441648 . - . ID=gene1400;Name=RD04_RS07005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07005;old_locus_tag=RD04_06985 NZ_CP010961.1 Protein Homology CDS 1440731 1441648 . - 0 ID=cds1377;Parent=gene1400;Dbxref=Genbank:WP_010930508.1;Name=WP_010930508.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930508.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1441755 1442051 . + . ID=gene1401;Name=RD04_RS07010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07010;old_locus_tag=RD04_06990 NZ_CP010961.1 Protein Homology CDS 1441755 1442051 . + 0 ID=cds1378;Parent=gene1401;Dbxref=Genbank:WP_003811452.1;Name=WP_003811452.1;gbkey=CDS;product=membrane protein;protein_id=WP_003811452.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1442198 1443100 . + . ID=gene1402;Name=RD04_RS07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07015;old_locus_tag=RD04_06995 NZ_CP010961.1 GeneMarkS+ CDS 1442198 1443100 . + 0 ID=cds1379;Parent=gene1402;Dbxref=Genbank:WP_041166317.1;Name=WP_041166317.1;gbkey=CDS;product=integrase;protein_id=WP_041166317.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1443100 1443837 . - . ID=gene1403;Name=RD04_RS07020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07020;old_locus_tag=RD04_07000;partial=true;pseudo=true;start_range=.,1443100 NZ_CP010961.1 Protein Homology CDS 1443100 1443837 . - 0 ID=cds1380;Parent=gene1403;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=ABC transporter substrate-binding protein;pseudo=true;start_range=.,1443100;transl_table=11 NZ_CP010961.1 RefSeq gene 1444259 1447192 . + . ID=gene1404;Name=RD04_RS07025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07025;old_locus_tag=RD04_07005 NZ_CP010961.1 Protein Homology CDS 1444259 1447192 . + 0 ID=cds1381;Parent=gene1404;Dbxref=Genbank:WP_010930509.1;Name=WP_010930509.1;Note=subunit A of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali%3B in S. meliloti it is known to be involved with K+;gbkey=CDS;product=monovalent cation/H+ antiporter subunit A;protein_id=WP_010930509.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1447192 1447536 . + . ID=gene1405;Name=RD04_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07030;old_locus_tag=RD04_07010 NZ_CP010961.1 Protein Homology CDS 1447192 1447536 . + 0 ID=cds1382;Parent=gene1405;Dbxref=Genbank:WP_003810969.1;Name=WP_003810969.1;Note=subunit C of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali;gbkey=CDS;product=Na+/H+ antiporter subunit C;protein_id=WP_003810969.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1447533 1449161 . + . ID=gene1406;Name=RD04_RS07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07035;old_locus_tag=RD04_07015 NZ_CP010961.1 Protein Homology CDS 1447533 1449161 . + 0 ID=cds1383;Parent=gene1406;Dbxref=Genbank:WP_004568496.1;Name=WP_004568496.1;Note=subunit D of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali%3B contains an oxidoreductase domain%3B catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=monovalent cation/H+ antiporter subunit D;protein_id=WP_004568496.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1449161 1449637 . + . ID=gene1407;Name=RD04_RS07040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07040;old_locus_tag=RD04_07020 NZ_CP010961.1 Protein Homology CDS 1449161 1449637 . + 0 ID=cds1384;Parent=gene1407;Dbxref=Genbank:WP_023852885.1;Name=WP_023852885.1;gbkey=CDS;product=Na+/H+ antiporter subunit E;protein_id=WP_023852885.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1449637 1449918 . + . ID=gene1408;Name=RD04_RS07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07045;old_locus_tag=RD04_07025 NZ_CP010961.1 Protein Homology CDS 1449637 1449918 . + 0 ID=cds1385;Parent=gene1408;Dbxref=Genbank:WP_033446177.1;Name=WP_033446177.1;gbkey=CDS;product=K+/H+ antiporter subunit F;protein_id=WP_033446177.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1449915 1450241 . + . ID=gene1409;Name=RD04_RS07050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07050;old_locus_tag=RD04_07030 NZ_CP010961.1 Protein Homology CDS 1449915 1450241 . + 0 ID=cds1386;Parent=gene1409;Dbxref=Genbank:WP_010930511.1;Name=WP_010930511.1;gbkey=CDS;product=cation:proton antiporter;protein_id=WP_010930511.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1450397 1451347 . + . ID=gene1410;Name=RD04_RS07055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07055;old_locus_tag=RD04_07035 NZ_CP010961.1 Protein Homology CDS 1450397 1451347 . + 0 ID=cds1387;Parent=gene1410;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1451391 1451933 . + . ID=gene1411;Name=RD04_RS07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07060;old_locus_tag=RD04_07040 NZ_CP010961.1 Protein Homology CDS 1451391 1451933 . + 0 ID=cds1388;Parent=gene1411;Dbxref=Genbank:WP_019247780.1;Name=WP_019247780.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247780.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1452031 1452879 . + . ID=gene1412;Name=RD04_RS07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07065;old_locus_tag=RD04_07045 NZ_CP010961.1 Protein Homology CDS 1452031 1452879 . + 0 ID=cds1389;Parent=gene1412;Dbxref=Genbank:WP_010930513.1;Name=WP_010930513.1;gbkey=CDS;product=hydrolase;protein_id=WP_010930513.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1452929 1453378 . + . ID=gene1413;Name=RD04_RS07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07070;old_locus_tag=RD04_07050 NZ_CP010961.1 Protein Homology CDS 1452929 1453378 . + 0 ID=cds1390;Parent=gene1413;Dbxref=Genbank:WP_010930514.1;Name=WP_010930514.1;gbkey=CDS;product=tRNA-specific adenosine deaminase;protein_id=WP_010930514.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1453375 1454376 . + . ID=gene1414;Name=RD04_RS07075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07075;old_locus_tag=RD04_07055 NZ_CP010961.1 Protein Homology CDS 1453375 1454376 . + 0 ID=cds1391;Parent=gene1414;Dbxref=Genbank:WP_010930515.1;Name=WP_010930515.1;gbkey=CDS;product=muramoyltetrapeptide carboxypeptidase;protein_id=WP_010930515.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1454389 1455183 . - . ID=gene1415;Name=RD04_RS07080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07080;old_locus_tag=RD04_07060 NZ_CP010961.1 Protein Homology CDS 1454389 1455183 . - 0 ID=cds1392;Parent=gene1415;Dbxref=Genbank:WP_010930516.1;Name=WP_010930516.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010930516.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1455232 1457133 . - . ID=gene1416;Name=RD04_RS07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07085;old_locus_tag=RD04_07065 NZ_CP010961.1 Protein Homology CDS 1455232 1457133 . - 0 ID=cds1393;Parent=gene1416;Dbxref=Genbank:WP_010930517.1;Name=WP_010930517.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930517.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1457130 1457753 . - . ID=gene1417;Name=RD04_RS07090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07090;old_locus_tag=RD04_07070 NZ_CP010961.1 Protein Homology CDS 1457130 1457753 . - 0 ID=cds1394;Parent=gene1417;Dbxref=Genbank:WP_003810992.1;Name=WP_003810992.1;gbkey=CDS;product=membrane protein;protein_id=WP_003810992.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1457880 1459004 . - . ID=gene1418;Name=RD04_RS07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07095;old_locus_tag=RD04_07075 NZ_CP010961.1 Protein Homology CDS 1457880 1459004 . - 0 ID=cds1395;Parent=gene1418;Dbxref=Genbank:WP_003816541.1;Name=WP_003816541.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003816541.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1459385 1460989 . + . ID=gene1419;Name=RD04_RS07100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07100;old_locus_tag=RD04_07080 NZ_CP010961.1 Protein Homology CDS 1459385 1460989 . + 0 ID=cds1396;Parent=gene1419;Dbxref=Genbank:WP_010930518.1;Name=WP_010930518.1;gbkey=CDS;product=ABC-F family ATPase;protein_id=WP_010930518.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1461145 1461921 . + . ID=gene1420;Name=RD04_RS07105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07105;old_locus_tag=RD04_07085 NZ_CP010961.1 Protein Homology CDS 1461145 1461921 . + 0 ID=cds1397;Parent=gene1420;Dbxref=Genbank:WP_010930519.1;Name=WP_010930519.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930519.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1462006 1463004 . + . ID=gene1421;Name=RD04_RS07110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07110;old_locus_tag=RD04_07090 NZ_CP010961.1 Protein Homology CDS 1462006 1463004 . + 0 ID=cds1398;Parent=gene1421;Dbxref=Genbank:WP_010930520.1;Name=WP_010930520.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930520.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1463001 1463774 . + . ID=gene1422;Name=RD04_RS07115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07115;old_locus_tag=RD04_07095 NZ_CP010961.1 Protein Homology CDS 1463001 1463774 . + 0 ID=cds1399;Parent=gene1422;Dbxref=Genbank:WP_010930521.1;Name=WP_010930521.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010930521.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1463811 1464660 . + . ID=gene1423;Name=RD04_RS07120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07120;old_locus_tag=RD04_07100;pseudo=true NZ_CP010961.1 Protein Homology CDS 1463811 1464660 . + 0 ID=cds1400;Parent=gene1423;Note=frameshifted;gbkey=CDS;product=ABC transporter substrate-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1464807 1465709 . + . ID=gene1424;Name=RD04_RS07125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07125;old_locus_tag=RD04_07105 NZ_CP010961.1 GeneMarkS+ CDS 1464807 1465709 . + 0 ID=cds1401;Parent=gene1424;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1465747 1466334 . + . ID=gene1425;Name=RD04_RS07130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07130;old_locus_tag=RD04_07110 NZ_CP010961.1 Protein Homology CDS 1465747 1466334 . + 0 ID=cds1402;Parent=gene1425;Dbxref=Genbank:WP_010930523.1;Name=WP_010930523.1;gbkey=CDS;product=thymidylate synthase;protein_id=WP_010930523.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1466352 1466735 . - . ID=gene1426;Name=RD04_RS07135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07135;old_locus_tag=RD04_07115 NZ_CP010961.1 Protein Homology CDS 1466352 1466735 . - 0 ID=cds1403;Parent=gene1426;Dbxref=Genbank:WP_003811007.1;Name=WP_003811007.1;gbkey=CDS;product=thiol reductase thioredoxin;protein_id=WP_003811007.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1466871 1467889 . - . ID=gene1427;Name=RD04_RS07140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07140;old_locus_tag=RD04_07120;pseudo=true NZ_CP010961.1 Protein Homology CDS 1466871 1467889 . - 0 ID=cds1404;Parent=gene1427;Note=frameshifted;gbkey=CDS;product=luciferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1468095 1469387 . - . ID=gene1428;Name=RD04_RS07145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07145;old_locus_tag=RD04_07125 NZ_CP010961.1 Protein Homology CDS 1468095 1469387 . - 0 ID=cds1405;Parent=gene1428;Dbxref=Genbank:WP_003811011.1;Name=WP_003811011.1;gbkey=CDS;product=permease;protein_id=WP_003811011.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1469522 1470562 . + . ID=gene1429;Name=RD04_RS07150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07150;old_locus_tag=RD04_07130 NZ_CP010961.1 Protein Homology CDS 1469522 1470562 . + 0 ID=cds1406;Parent=gene1429;Dbxref=Genbank:WP_010930524.1;Name=WP_010930524.1;Note=universal genome maintenance protein%3B Kae1/Qri7/OSGEP/YgjD family protein%3B in Archaea%2C some Kae1 are found as fusion proteins similar to two distinct proteins in yeast that are involved in the KEOPS complex%3B kinase associated endopeptidase 1 (Kae1) and a serine/threonine protein kinase (Bud32)%3B in Pyrococcus Kae1 has atypical AP endonuclease activity and inhibits the kinase activity of Bud32%3B the protein is essential in Escherichia coli and Bacillus subtilis;gbkey=CDS;product=tRNA N6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=WP_010930524.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1470660 1471676 . - . ID=gene1430;Name=RD04_RS07155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07155;old_locus_tag=RD04_07135 NZ_CP010961.1 Protein Homology CDS 1470660 1471676 . - 0 ID=cds1407;Parent=gene1430;Dbxref=Genbank:WP_010929632.1;Name=WP_010929632.1;gbkey=CDS;product=transposase;protein_id=WP_010929632.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1471944 1472579 . - . ID=gene1431;Name=RD04_RS07160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07160;old_locus_tag=RD04_07140 NZ_CP010961.1 Protein Homology CDS 1471944 1472579 . - 0 ID=cds1408;Parent=gene1431;Dbxref=Genbank:WP_023852762.1;Name=WP_023852762.1;gbkey=CDS;product=glycerol-3-phosphate acyltransferase;protein_id=WP_023852762.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1472717 1473475 . + . ID=gene1432;Name=RD04_RS07165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07165;old_locus_tag=RD04_07145 NZ_CP010961.1 Protein Homology CDS 1472717 1473475 . + 0 ID=cds1409;Parent=gene1432;Dbxref=Genbank:WP_010930526.1;Name=WP_010930526.1;gbkey=CDS;product=5'-nucleotidase SurE;protein_id=WP_010930526.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1473460 1474239 . + . ID=gene1433;Name=RD04_RS07170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07170;old_locus_tag=RD04_07150 NZ_CP010961.1 Protein Homology CDS 1473460 1474239 . + 0 ID=cds1410;Parent=gene1433;Dbxref=Genbank:WP_019247478.1;Name=WP_019247478.1;gbkey=CDS;product=protein-L-isoaspartate O-methyltransferase;protein_id=WP_019247478.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1474257 1475141 . + . ID=gene1434;Name=RD04_RS07175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07175;old_locus_tag=RD04_07155 NZ_CP010961.1 Protein Homology CDS 1474257 1475141 . + 0 ID=cds1411;Parent=gene1434;Dbxref=Genbank:WP_003811022.1;Name=WP_003811022.1;gbkey=CDS;product=peptidase;protein_id=WP_003811022.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1475138 1475917 . + . ID=gene1435;Name=RD04_RS07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07180;old_locus_tag=RD04_07160 NZ_CP010961.1 Protein Homology CDS 1475138 1475917 . + 0 ID=cds1412;Parent=gene1435;Dbxref=Genbank:WP_004568488.1;Name=WP_004568488.1;gbkey=CDS;product=3'-5' exonuclease;protein_id=WP_004568488.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1476022 1476621 . + . ID=gene1436;Name=RD04_RS07185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07185;old_locus_tag=RD04_07165 NZ_CP010961.1 Protein Homology CDS 1476022 1476621 . + 0 ID=cds1413;Parent=gene1436;Dbxref=Genbank:WP_010930528.1;Name=WP_010930528.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930528.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1476910 1477662 . + . ID=gene1437;Name=RD04_RS07190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07190;old_locus_tag=RD04_07170 NZ_CP010961.1 Protein Homology CDS 1476910 1477662 . + 0 ID=cds1414;Parent=gene1437;Dbxref=Genbank:WP_010930529.1;Name=WP_010930529.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930529.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1477781 1479181 . + . ID=gene1438;Name=RD04_RS07195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07195;old_locus_tag=RD04_07175 NZ_CP010961.1 Protein Homology CDS 1477781 1479181 . + 0 ID=cds1415;Parent=gene1438;Dbxref=Genbank:WP_003816525.1;Name=WP_003816525.1;gbkey=CDS;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_003816525.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1479205 1479603 . - . ID=gene1439;Name=RD04_RS07200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07200;old_locus_tag=RD04_07180 NZ_CP010961.1 Protein Homology CDS 1479205 1479603 . - 0 ID=cds1416;Parent=gene1439;Dbxref=Genbank:WP_003816523.1;Name=WP_003816523.1;gbkey=CDS;product=Cu(I)-responsive transcriptional regulator;protein_id=WP_003816523.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1479779 1479979 . + . ID=gene1440;Name=RD04_RS07205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07205;old_locus_tag=RD04_07185 NZ_CP010961.1 Protein Homology CDS 1479779 1479979 . + 0 ID=cds1417;Parent=gene1440;Dbxref=Genbank:WP_003811035.1;Name=WP_003811035.1;gbkey=CDS;product=heavy metal transporter;protein_id=WP_003811035.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1480118 1480846 . + . ID=gene1441;Name=RD04_RS07210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07210;old_locus_tag=RD04_07190 NZ_CP010961.1 Protein Homology CDS 1480118 1480846 . + 0 ID=cds1418;Parent=gene1441;Dbxref=Genbank:WP_010930530.1;Name=WP_010930530.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_010930530.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1480980 1482395 . + . ID=gene1442;Name=RD04_RS07215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07215;old_locus_tag=RD04_07195 NZ_CP010961.1 Protein Homology CDS 1480980 1482395 . + 0 ID=cds1419;Parent=gene1442;Dbxref=Genbank:WP_003816520.1;Name=WP_003816520.1;Note=Catalyzes the oxidation of dihydrolipoamide to lipoamide;gbkey=CDS;product=dihydrolipoyl dehydrogenase;protein_id=WP_003816520.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1482399 1483262 . - . ID=gene1443;Name=RD04_RS07220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07220;old_locus_tag=RD04_07200 NZ_CP010961.1 Protein Homology CDS 1482399 1483262 . - 0 ID=cds1420;Parent=gene1443;Dbxref=Genbank:WP_003816518.1;Name=WP_003816518.1;gbkey=CDS;product=competence protein ComJ;protein_id=WP_003816518.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1483275 1484024 . - . ID=gene1444;Name=RD04_RS07225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07225;old_locus_tag=RD04_07205 NZ_CP010961.1 Protein Homology CDS 1483275 1484024 . - 0 ID=cds1421;Parent=gene1444;Dbxref=Genbank:WP_004568486.1;Name=WP_004568486.1;gbkey=CDS;product=glycerophosphoryl diester phosphodiesterase;protein_id=WP_004568486.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1484267 1486222 . + . ID=gene1445;Name=RD04_RS07230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07230;old_locus_tag=RD04_07210 NZ_CP010961.1 Protein Homology CDS 1484267 1486222 . + 0 ID=cds1422;Parent=gene1445;Dbxref=Genbank:WP_010930531.1;Name=WP_010930531.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_010930531.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1486204 1486872 . - . ID=gene1446;Name=RD04_RS07235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07235;old_locus_tag=RD04_07215 NZ_CP010961.1 Protein Homology CDS 1486204 1486872 . - 0 ID=cds1423;Parent=gene1446;Dbxref=Genbank:WP_019247882.1;Name=WP_019247882.1;gbkey=CDS;product=arylesterase;protein_id=WP_019247882.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1486871 1487377 . + . ID=gene1447;Name=RD04_RS07240;end_range=1487377,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07240;old_locus_tag=RD04_07220;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 1486871 1487377 . + 0 ID=cds1424;Parent=gene1447;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=1487377,.;gbkey=CDS;partial=true;product=ABC transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1487695 1488597 . + . ID=gene1448;Name=RD04_RS07245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07245;old_locus_tag=RD04_07225 NZ_CP010961.1 GeneMarkS+ CDS 1487695 1488597 . + 0 ID=cds1425;Parent=gene1448;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1488746 1489084 . - . ID=gene1449;Name=RD04_RS07250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07250;old_locus_tag=RD04_07230 NZ_CP010961.1 Protein Homology CDS 1488746 1489084 . - 0 ID=cds1426;Parent=gene1449;Dbxref=Genbank:WP_003813572.1;Name=WP_003813572.1;gbkey=CDS;product=phospholipid-binding protein;protein_id=WP_003813572.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1489142 1489303 . - . ID=gene1450;Name=RD04_RS07255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07255;old_locus_tag=RD04_07235 NZ_CP010961.1 Protein Homology CDS 1489142 1489303 . - 0 ID=cds1427;Parent=gene1450;Dbxref=Genbank:WP_003813570.1;Name=WP_003813570.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813570.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1489335 1489535 . - . ID=gene1451;Name=RD04_RS07260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07260;old_locus_tag=RD04_07240 NZ_CP010961.1 Protein Homology CDS 1489335 1489535 . - 0 ID=cds1428;Parent=gene1451;Dbxref=Genbank:WP_003813568.1;Name=WP_003813568.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813568.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1489801 1492374 . - . ID=gene1452;Name=RD04_RS07265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07265;old_locus_tag=RD04_07245 NZ_CP010961.1 Protein Homology CDS 1489801 1492374 . - 0 ID=cds1429;Parent=gene1452;Dbxref=Genbank:WP_010930533.1;Name=WP_010930533.1;Note=catalyze the formation of cyanophycin which may act to store excess nitrogen;gbkey=CDS;product=cyanophycin synthetase;protein_id=WP_010930533.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1492445 1494994 . - . ID=gene1453;Name=RD04_RS07270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07270;old_locus_tag=RD04_07250 NZ_CP010961.1 Protein Homology CDS 1492445 1494994 . - 0 ID=cds1430;Parent=gene1453;Dbxref=Genbank:WP_019247811.1;Name=WP_019247811.1;gbkey=CDS;product=cyanophycin synthetase;protein_id=WP_019247811.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1495259 1497548 . + . ID=gene1454;Name=RD04_RS07275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07275;old_locus_tag=RD04_07255;pseudo=true NZ_CP010961.1 Protein Homology CDS 1495259 1497548 . + 0 ID=cds1431;Parent=gene1454;Note=frameshifted%3B internal stop;gbkey=CDS;product=ABC transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1497563 1498033 . + . ID=gene1455;Name=RD04_RS07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07280;old_locus_tag=RD04_07260 NZ_CP010961.1 Protein Homology CDS 1497563 1498033 . + 0 ID=cds1432;Parent=gene1455;Dbxref=Genbank:WP_023852690.1;Name=WP_023852690.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023852690.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1498125 1499276 . - . ID=gene1456;Name=RD04_RS07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07285;old_locus_tag=RD04_07265 NZ_CP010961.1 Protein Homology CDS 1498125 1499276 . - 0 ID=cds1433;Parent=gene1456;Dbxref=Genbank:WP_029443743.1;Name=WP_029443743.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_029443743.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1499330 1500151 . + . ID=gene1457;Name=RD04_RS07290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07290;old_locus_tag=RD04_07270 NZ_CP010961.1 Protein Homology CDS 1499330 1500151 . + 0 ID=cds1434;Parent=gene1457;Dbxref=Genbank:WP_004566336.1;Name=WP_004566336.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004566336.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1500190 1501419 . + . ID=gene1458;Name=RD04_RS07295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07295;old_locus_tag=RD04_07275 NZ_CP010961.1 Protein Homology CDS 1500190 1501419 . + 0 ID=cds1435;Parent=gene1458;Dbxref=Genbank:WP_010930537.1;Name=WP_010930537.1;gbkey=CDS;product=lytic transglycosylase;protein_id=WP_010930537.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1501548 1501988 . + . ID=gene1459;Name=RD04_RS07300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07300;old_locus_tag=RD04_07280 NZ_CP010961.1 Protein Homology CDS 1501548 1501988 . + 0 ID=cds1436;Parent=gene1459;Dbxref=Genbank:WP_004566334.1;Name=WP_004566334.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004566334.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1502099 1503049 . + . ID=gene1460;Name=RD04_RS07305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07305;old_locus_tag=RD04_07285 NZ_CP010961.1 Protein Homology CDS 1502099 1503049 . + 0 ID=cds1437;Parent=gene1460;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1503046 1503519 . - . ID=gene1461;Name=RD04_RS07310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07310;old_locus_tag=RD04_07290 NZ_CP010961.1 Protein Homology CDS 1503046 1503519 . - 0 ID=cds1438;Parent=gene1461;Dbxref=Genbank:WP_010930538.1;Name=WP_010930538.1;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_010930538.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1503681 1504619 . + . ID=gene1462;Name=RD04_RS07315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07315;old_locus_tag=RD04_07295 NZ_CP010961.1 Protein Homology CDS 1503681 1504619 . + 0 ID=cds1439;Parent=gene1462;Dbxref=Genbank:WP_033446178.1;Name=WP_033446178.1;gbkey=CDS;product=membrane protein;protein_id=WP_033446178.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1504621 1505829 . - . ID=gene1463;Name=RD04_RS07320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07320;old_locus_tag=RD04_07300 NZ_CP010961.1 Protein Homology CDS 1504621 1505829 . - 0 ID=cds1440;Parent=gene1463;Dbxref=Genbank:WP_010930540.1;Name=WP_010930540.1;gbkey=CDS;product=phosphopantothenate synthase;protein_id=WP_010930540.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1505934 1506440 . - . ID=gene1464;Name=RD04_RS07325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07325;old_locus_tag=RD04_07305 NZ_CP010961.1 Protein Homology CDS 1505934 1506440 . - 0 ID=cds1441;Parent=gene1464;Dbxref=Genbank:WP_010930541.1;Name=WP_010930541.1;gbkey=CDS;product=signal peptidase II;protein_id=WP_010930541.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1506443 1509304 . - . ID=gene1465;Name=RD04_RS07330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07330;old_locus_tag=RD04_07310 NZ_CP010961.1 Protein Homology CDS 1506443 1509304 . - 0 ID=cds1442;Parent=gene1465;Dbxref=Genbank:WP_010930542.1;Name=WP_010930542.1;gbkey=CDS;product=isoleucine--tRNA ligase;protein_id=WP_010930542.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1509294 1510259 . - . ID=gene1466;Name=RD04_RS07335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07335;old_locus_tag=RD04_07315 NZ_CP010961.1 Protein Homology CDS 1509294 1510259 . - 0 ID=cds1443;Parent=gene1466;Dbxref=Genbank:WP_010930543.1;Name=WP_010930543.1;gbkey=CDS;product=bifunctional riboflavin kinase/FMN adenylyltransferase;protein_id=WP_010930543.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1510916 1512313 . + . ID=gene1467;Name=RD04_RS07340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07340;old_locus_tag=RD04_07320 NZ_CP010961.1 Protein Homology CDS 1510916 1512313 . + 0 ID=cds1444;Parent=gene1467;Dbxref=Genbank:WP_047122809.1;Name=WP_047122809.1;gbkey=CDS;product=rRNA methyltransferase;protein_id=WP_047122809.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1512460 1513362 . + . ID=gene1468;Name=RD04_RS07345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07345;old_locus_tag=RD04_07325 NZ_CP010961.1 GeneMarkS+ CDS 1512460 1513362 . + 0 ID=cds1445;Parent=gene1468;Dbxref=Genbank:WP_023998220.1;Name=WP_023998220.1;gbkey=CDS;product=transposase;protein_id=WP_023998220.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1513359 1513733 . - . ID=gene1469;Name=RD04_RS07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07350;old_locus_tag=RD04_07330 NZ_CP010961.1 Protein Homology CDS 1513359 1513733 . - 0 ID=cds1446;Parent=gene1469;Dbxref=Genbank:WP_010930545.1;Name=WP_010930545.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930545.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1513995 1515203 . + . ID=gene1470;Name=RD04_RS07355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07355;old_locus_tag=RD04_07335 NZ_CP010961.1 Protein Homology CDS 1513995 1515203 . + 0 ID=cds1447;Parent=gene1470;Dbxref=Genbank:WP_003812548.1;Name=WP_003812548.1;gbkey=CDS;product=aminotransferase;protein_id=WP_003812548.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1515200 1517500 . + . ID=gene1471;Name=RD04_RS07360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07360;old_locus_tag=RD04_07340 NZ_CP010961.1 Protein Homology CDS 1515200 1517500 . + 0 ID=cds1448;Parent=gene1471;Dbxref=Genbank:WP_003812546.1;Name=WP_003812546.1;gbkey=CDS;product=DNA-dependent helicase;protein_id=WP_003812546.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1517553 1520165 . - . ID=gene1472;Name=RD04_RS07365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07365;old_locus_tag=RD04_07345 NZ_CP010961.1 Protein Homology CDS 1517553 1520165 . - 0 ID=cds1449;Parent=gene1472;Dbxref=Genbank:WP_010926400.1;Name=WP_010926400.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_010926400.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1520525 1522432 . - . ID=gene1473;Name=RD04_RS07370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07370;old_locus_tag=RD04_07350 NZ_CP010961.1 Protein Homology CDS 1520525 1522432 . - 0 ID=cds1450;Parent=gene1473;Dbxref=Genbank:WP_033446179.1;Name=WP_033446179.1;gbkey=CDS;product=ABC transporter;protein_id=WP_033446179.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1522447 1523343 . - . ID=gene1474;Name=RD04_RS07375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07375;old_locus_tag=RD04_07355 NZ_CP010961.1 Protein Homology CDS 1522447 1523343 . - 0 ID=cds1451;Parent=gene1474;Dbxref=Genbank:WP_019247938.1;Name=WP_019247938.1;gbkey=CDS;product=ribosomal protein L3 N(5)-glutamine methyltransferase;protein_id=WP_019247938.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1523350 1524489 . - . ID=gene1475;Name=RD04_RS07380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07380;old_locus_tag=RD04_07360 NZ_CP010961.1 Protein Homology CDS 1523350 1524489 . - 0 ID=cds1452;Parent=gene1475;Dbxref=Genbank:WP_010930548.1;Name=WP_010930548.1;Note=dapE-encoded N-succinyl-L%2CL-diaminopimelic acid desuccinylase (DapE)%2C catalyzes the hydrolysis of N-succinyl-L%2CLdiaminopimelate L%2CL-SDAP to L%2CL-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.;gbkey=CDS;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_010930548.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1524489 1525310 . - . ID=gene1476;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=RD04_RS07385;old_locus_tag=RD04_07365 NZ_CP010961.1 Protein Homology CDS 1524489 1525310 . - 0 ID=cds1453;Parent=gene1476;Dbxref=Genbank:WP_003812536.1;Name=WP_003812536.1;Note=catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway;gbkey=CDS;gene=dapD;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_003812536.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1525336 1526530 . - . ID=gene1477;Name=RD04_RS07390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07390;old_locus_tag=RD04_07370;pseudo=true NZ_CP010961.1 Protein Homology CDS 1525336 1526530 . - 0 ID=cds1454;Parent=gene1477;Note=frameshifted;gbkey=CDS;product=succinyldiaminopimelate transaminase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1526576 1526662 . + . ID=gene1478;Name=RD04_RS07395;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS07395;old_locus_tag=RD04_07375 NZ_CP010961.1 tRNAscan-SE tRNA 1526576 1526662 . + . ID=rna23;Parent=gene1478;anticodon=(pos:1526610..1526612);gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 tRNAscan-SE exon 1526576 1526662 . + . ID=id28;Parent=rna23;anticodon=(pos:1526610..1526612);gbkey=tRNA;product=tRNA-Leu NZ_CP010961.1 RefSeq gene 1526881 1527210 . - . ID=gene1479;Name=RD04_RS07400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07400;old_locus_tag=RD04_07380 NZ_CP010961.1 Protein Homology CDS 1526881 1527210 . - 0 ID=cds1455;Parent=gene1479;Dbxref=Genbank:WP_010930549.1;Name=WP_010930549.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930549.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1527593 1528849 . + . ID=gene1480;Name=RD04_RS07405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07405;old_locus_tag=RD04_07385 NZ_CP010961.1 Protein Homology CDS 1527593 1528849 . + 0 ID=cds1456;Parent=gene1480;Dbxref=Genbank:WP_010930550.1;Name=WP_010930550.1;gbkey=CDS;product=autotransporter;protein_id=WP_010930550.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1528924 1529205 . + . ID=gene1481;Name=RD04_RS07410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07410;old_locus_tag=RD04_07390 NZ_CP010961.1 Protein Homology CDS 1528924 1529205 . + 0 ID=cds1457;Parent=gene1481;Dbxref=Genbank:WP_003812526.1;Name=WP_003812526.1;gbkey=CDS;product=membrane protein;protein_id=WP_003812526.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1529247 1529567 . + . ID=gene1482;Name=RD04_RS07415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07415;old_locus_tag=RD04_07395 NZ_CP010961.1 Protein Homology CDS 1529247 1529567 . + 0 ID=cds1458;Parent=gene1482;Dbxref=Genbank:WP_003812524.1;Name=WP_003812524.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812524.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1529874 1530077 . + . ID=gene1483;Name=RD04_RS07420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07420;old_locus_tag=RD04_07400 NZ_CP010961.1 Protein Homology CDS 1529874 1530077 . + 0 ID=cds1459;Parent=gene1483;Dbxref=Genbank:WP_010930551.1;Name=WP_010930551.1;gbkey=CDS;product=cold-shock protein CspA;protein_id=WP_010930551.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1530161 1530727 . + . ID=gene1484;Name=RD04_RS07425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07425;old_locus_tag=RD04_07405 NZ_CP010961.1 Protein Homology CDS 1530161 1530727 . + 0 ID=cds1460;Parent=gene1484;Dbxref=Genbank:WP_003812519.1;Name=WP_003812519.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812519.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1531073 1531273 . + . ID=gene1485;Name=RD04_RS07430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07430;old_locus_tag=RD04_07410 NZ_CP010961.1 Protein Homology CDS 1531073 1531273 . + 0 ID=cds1461;Parent=gene1485;Dbxref=Genbank:WP_010930553.1;Name=WP_010930553.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_010930553.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1531385 1531945 . - . ID=gene1486;Name=RD04_RS07435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07435;old_locus_tag=RD04_07415 NZ_CP010961.1 Protein Homology CDS 1531385 1531945 . - 0 ID=cds1462;Parent=gene1486;Dbxref=Genbank:WP_010930554.1;Name=WP_010930554.1;gbkey=CDS;product=TIGR00645 family protein;protein_id=WP_010930554.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1532142 1533452 . + . ID=gene1487;Name=RD04_RS07440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07440;old_locus_tag=RD04_07420 NZ_CP010961.1 Protein Homology CDS 1532142 1533452 . + 0 ID=cds1463;Parent=gene1487;Dbxref=Genbank:WP_010930555.1;Name=WP_010930555.1;gbkey=CDS;product=trigger factor;protein_id=WP_010930555.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1533455 1534108 . + . ID=gene1488;Name=RD04_RS07445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07445;old_locus_tag=RD04_07425 NZ_CP010961.1 Protein Homology CDS 1533455 1534108 . + 0 ID=cds1464;Parent=gene1488;Dbxref=Genbank:WP_003812508.1;Name=WP_003812508.1;gbkey=CDS;product=ATP-dependent Clp protease proteolytic subunit;protein_id=WP_003812508.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1534213 1535517 . + . ID=gene1489;Name=RD04_RS07450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07450;old_locus_tag=RD04_07430 NZ_CP010961.1 Protein Homology CDS 1534213 1535517 . + 0 ID=cds1465;Parent=gene1489;Dbxref=Genbank:WP_010930556.1;Name=WP_010930556.1;gbkey=CDS;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=WP_010930556.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1535706 1538159 . + . ID=gene1490;Name=RD04_RS07455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07455;old_locus_tag=RD04_07435 NZ_CP010961.1 Protein Homology CDS 1535706 1538159 . + 0 ID=cds1466;Parent=gene1490;Dbxref=Genbank:WP_010930557.1;Name=WP_010930557.1;gbkey=CDS;product=endopeptidase La;protein_id=WP_010930557.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1538283 1539233 . - . ID=gene1491;Name=RD04_RS07460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07460;old_locus_tag=RD04_07440 NZ_CP010961.1 Protein Homology CDS 1538283 1539233 . - 0 ID=cds1467;Parent=gene1491;Dbxref=Genbank:WP_019247936.1;Name=WP_019247936.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_019247936.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1539461 1540684 . + . ID=gene1492;Name=RD04_RS07465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07465;old_locus_tag=RD04_07445 NZ_CP010961.1 Protein Homology CDS 1539461 1540684 . + 0 ID=cds1468;Parent=gene1492;Dbxref=Genbank:WP_010930559.1;Name=WP_010930559.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010930559.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1540750 1541721 . + . ID=gene1493;Name=RD04_RS07470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07470;old_locus_tag=RD04_07450 NZ_CP010961.1 Protein Homology CDS 1540750 1541721 . + 0 ID=cds1469;Parent=gene1493;Dbxref=Genbank:WP_010930560.1;Name=WP_010930560.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930560.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1541734 1542189 . + . ID=gene1494;Name=RD04_RS07475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07475;old_locus_tag=RD04_07455 NZ_CP010961.1 Protein Homology CDS 1541734 1542189 . + 0 ID=cds1470;Parent=gene1494;Dbxref=Genbank:WP_029443773.1;Name=WP_029443773.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_029443773.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1542209 1543006 . + . ID=gene1495;Name=RD04_RS07480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07480;old_locus_tag=RD04_07460 NZ_CP010961.1 Protein Homology CDS 1542209 1543006 . + 0 ID=cds1471;Parent=gene1495;Dbxref=Genbank:WP_010930562.1;Name=WP_010930562.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010930562.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1543003 1543434 . + . ID=gene1496;Name=RD04_RS07485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07485;old_locus_tag=RD04_07465 NZ_CP010961.1 Protein Homology CDS 1543003 1543434 . + 0 ID=cds1472;Parent=gene1496;Dbxref=Genbank:WP_003812491.1;Name=WP_003812491.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812491.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1543431 1544588 . + . ID=gene1497;Name=RD04_RS07490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07490;old_locus_tag=RD04_07470 NZ_CP010961.1 Protein Homology CDS 1543431 1544588 . + 0 ID=cds1473;Parent=gene1497;Dbxref=Genbank:WP_010930563.1;Name=WP_010930563.1;gbkey=CDS;product=thiolase;protein_id=WP_010930563.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1544610 1545386 . + . ID=gene1498;Name=RD04_RS07495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07495;old_locus_tag=RD04_07475 NZ_CP010961.1 Protein Homology CDS 1544610 1545386 . + 0 ID=cds1474;Parent=gene1498;Dbxref=Genbank:WP_010930564.1;Name=WP_010930564.1;gbkey=CDS;product=3-oxoacyl-ACP reductase;protein_id=WP_010930564.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1545389 1546538 . + . ID=gene1499;Name=RD04_RS07500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07500;old_locus_tag=RD04_07480;pseudo=true NZ_CP010961.1 Protein Homology CDS 1545389 1546538 . + 0 ID=cds1475;Parent=gene1499;Note=frameshifted;gbkey=CDS;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1546560 1547554 . + . ID=gene1500;Name=RD04_RS07505;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07505;old_locus_tag=RD04_07485;pseudo=true NZ_CP010961.1 Protein Homology CDS 1546560 1547554 . + 0 ID=cds1476;Parent=gene1500;Note=frameshifted;gbkey=CDS;product=acyl-CoA dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1547599 1548267 . + . ID=gene1501;Name=RD04_RS07510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07510;old_locus_tag=RD04_07490 NZ_CP010961.1 Protein Homology CDS 1547599 1548267 . + 0 ID=cds1477;Parent=gene1501;Dbxref=Genbank:WP_010930565.1;Name=WP_010930565.1;gbkey=CDS;product=3-oxoadipate CoA-transferase subunit A;protein_id=WP_010930565.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1548260 1548901 . + . ID=gene1502;Name=RD04_RS07515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07515;old_locus_tag=RD04_07495 NZ_CP010961.1 Protein Homology CDS 1548260 1548901 . + 0 ID=cds1478;Parent=gene1502;Dbxref=Genbank:WP_003812478.1;Name=WP_003812478.1;gbkey=CDS;product=3-oxoadipate CoA-transferase subunit B;protein_id=WP_003812478.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1548936 1549667 . + . ID=gene1503;Name=RD04_RS07520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07520;old_locus_tag=RD04_07500 NZ_CP010961.1 Protein Homology CDS 1548936 1549667 . + 0 ID=cds1479;Parent=gene1503;Dbxref=Genbank:WP_019247935.1;Name=WP_019247935.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247935.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1549685 1549897 . + . ID=gene1504;Name=RD04_RS07525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07525;old_locus_tag=RD04_07505 NZ_CP010961.1 Protein Homology CDS 1549685 1549897 . + 0 ID=cds1480;Parent=gene1504;Dbxref=Genbank:WP_019247934.1;Name=WP_019247934.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247934.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1550468 1551418 . + . ID=gene1505;Name=RD04_RS07530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07530;old_locus_tag=RD04_07510 NZ_CP010961.1 Protein Homology CDS 1550468 1551418 . + 0 ID=cds1481;Parent=gene1505;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1551415 1551774 . - . ID=gene1506;Name=RD04_RS07535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07535;old_locus_tag=RD04_07515 NZ_CP010961.1 Protein Homology CDS 1551415 1551774 . - 0 ID=cds1482;Parent=gene1506;Dbxref=Genbank:WP_019248082.1;Name=WP_019248082.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248082.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1551820 1552749 . + . ID=gene1507;Name=RD04_RS07540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07540;old_locus_tag=RD04_07520 NZ_CP010961.1 Protein Homology CDS 1551820 1552749 . + 0 ID=cds1483;Parent=gene1507;Dbxref=Genbank:WP_019247243.1;Name=WP_019247243.1;gbkey=CDS;product=conjugal transfer protein TraC;protein_id=WP_019247243.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1552976 1553626 . - . ID=gene1508;Name=RD04_RS07545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07545;old_locus_tag=RD04_07525 NZ_CP010961.1 Protein Homology CDS 1552976 1553626 . - 0 ID=cds1484;Parent=gene1508;Dbxref=Genbank:WP_010930566.1;Name=WP_010930566.1;gbkey=CDS;product=LexA repressor;protein_id=WP_010930566.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1553755 1554957 . - . ID=gene1509;Name=RD04_RS07550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07550;old_locus_tag=RD04_07530 NZ_CP010961.1 Protein Homology CDS 1553755 1554957 . - 0 ID=cds1485;Parent=gene1509;Dbxref=Genbank:WP_019247244.1;Name=WP_019247244.1;gbkey=CDS;product=aspartate aminotransferase;protein_id=WP_019247244.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1555035 1557071 . + . ID=gene1510;Name=RD04_RS07555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07555;old_locus_tag=RD04_07535 NZ_CP010961.1 Protein Homology CDS 1555035 1557071 . + 0 ID=cds1486;Parent=gene1510;Dbxref=Genbank:WP_010930568.1;Name=WP_010930568.1;gbkey=CDS;product=UvrABC system protein B;protein_id=WP_010930568.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1557324 1557815 . + . ID=gene1511;Name=RD04_RS07560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07560;old_locus_tag=RD04_07540 NZ_CP010961.1 Protein Homology CDS 1557324 1557815 . + 0 ID=cds1487;Parent=gene1511;Dbxref=Genbank:WP_010930569.1;Name=WP_010930569.1;gbkey=CDS;product=phosphotyrosine protein phosphatase;protein_id=WP_010930569.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1558031 1558543 . + . ID=gene1512;Name=RD04_RS07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07565;old_locus_tag=RD04_07545 NZ_CP010961.1 Protein Homology CDS 1558031 1558543 . + 0 ID=cds1488;Parent=gene1512;Dbxref=Genbank:WP_003812463.1;Name=WP_003812463.1;gbkey=CDS;product=Fe-S cluster assembly transcriptional regulator IscR;protein_id=WP_003812463.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1558561 1559772 . + . ID=gene1513;Name=RD04_RS07570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07570;old_locus_tag=RD04_07550 NZ_CP010961.1 Protein Homology CDS 1558561 1559772 . + 0 ID=cds1489;Parent=gene1513;Dbxref=Genbank:WP_010930570.1;Name=WP_010930570.1;Note=catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis;gbkey=CDS;product=cysteine desulfurase IscS;protein_id=WP_010930570.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1559810 1560220 . + . ID=gene1514;Name=RD04_RS07575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07575;old_locus_tag=RD04_07555 NZ_CP010961.1 Protein Homology CDS 1559810 1560220 . + 0 ID=cds1490;Parent=gene1514;Dbxref=Genbank:WP_003812460.1;Name=WP_003812460.1;gbkey=CDS;product=iron-sulfur cluster scaffold-like protein;protein_id=WP_003812460.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1560222 1560545 . + . ID=gene1515;Name=iscA;gbkey=Gene;gene=iscA;gene_biotype=protein_coding;locus_tag=RD04_RS07580;old_locus_tag=RD04_07560 NZ_CP010961.1 Protein Homology CDS 1560222 1560545 . + 0 ID=cds1491;Parent=gene1515;Dbxref=Genbank:WP_003812458.1;Name=WP_003812458.1;Note=forms iron-sulfur clusters of ferredoxin [2FE-2S]%3B binds iron in the presence of the thioredoxin reductase system%3B forms homodimers and tetramers%3B similar to SufA protein;gbkey=CDS;gene=iscA;product=iron-sulfur cluster assembly protein IscA;protein_id=WP_003812458.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1560548 1561060 . + . ID=gene1516;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=RD04_RS07585;old_locus_tag=RD04_07565 NZ_CP010961.1 Protein Homology CDS 1560548 1561060 . + 0 ID=cds1492;Parent=gene1516;Dbxref=Genbank:WP_003812456.1;Name=WP_003812456.1;Note=J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone%3B may function in biogenesis of iron-sulfur proteins;gbkey=CDS;gene=hscB;product=Co-chaperone protein HscB homolog;protein_id=WP_003812456.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1561190 1563052 . + . ID=gene1517;Name=RD04_RS07590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07590;old_locus_tag=RD04_07570 NZ_CP010961.1 Protein Homology CDS 1561190 1563052 . + 0 ID=cds1493;Parent=gene1517;Dbxref=Genbank:WP_010930571.1;Name=WP_010930571.1;gbkey=CDS;product=Chaperone protein HscA homolog;protein_id=WP_010930571.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1563062 1563403 . + . ID=gene1518;Name=RD04_RS07595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07595;old_locus_tag=RD04_07575 NZ_CP010961.1 Protein Homology CDS 1563062 1563403 . + 0 ID=cds1494;Parent=gene1518;Dbxref=Genbank:WP_003812453.1;Name=WP_003812453.1;gbkey=CDS;product=ferredoxin%2C 2Fe-2S type%2C ISC system;protein_id=WP_003812453.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1563403 1563597 . + . ID=gene1519;Name=RD04_RS07600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07600;old_locus_tag=RD04_07580 NZ_CP010961.1 Protein Homology CDS 1563403 1563597 . + 0 ID=cds1495;Parent=gene1519;Dbxref=Genbank:WP_003812452.1;Name=WP_003812452.1;gbkey=CDS;product=Fe-S assembly protein IscX;protein_id=WP_003812452.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1563722 1564615 . + . ID=gene1520;Name=RD04_RS07605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07605;old_locus_tag=RD04_07585 NZ_CP010961.1 Protein Homology CDS 1563722 1564615 . + 0 ID=cds1496;Parent=gene1520;Dbxref=Genbank:WP_010930572.1;Name=WP_010930572.1;gbkey=CDS;product=methylglyoxal synthase;protein_id=WP_010930572.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1564612 1565562 . - . ID=gene1521;Name=RD04_RS07610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07610;old_locus_tag=RD04_07590 NZ_CP010961.1 Protein Homology CDS 1564612 1565562 . - 0 ID=cds1497;Parent=gene1521;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1565687 1566496 . - . ID=gene1522;Name=RD04_RS07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07615;old_locus_tag=RD04_07595 NZ_CP010961.1 Protein Homology CDS 1565687 1566496 . - 0 ID=cds1498;Parent=gene1522;Dbxref=Genbank:WP_010930573.1;Name=WP_010930573.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010930573.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1566745 1567647 . + . ID=gene1523;Name=RD04_RS07620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07620;old_locus_tag=RD04_07600 NZ_CP010961.1 GeneMarkS+ CDS 1566745 1567647 . + 0 ID=cds1499;Parent=gene1523;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1567794 1568696 . + . ID=gene1524;Name=RD04_RS07625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07625;old_locus_tag=RD04_07605 NZ_CP010961.1 GeneMarkS+ CDS 1567794 1568696 . + 0 ID=cds1500;Parent=gene1524;Dbxref=Genbank:WP_023994703.1;Name=WP_023994703.1;gbkey=CDS;product=transposase;protein_id=WP_023994703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1568946 1569969 . + . ID=gene1525;Name=RD04_RS07630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07630;old_locus_tag=RD04_07610;pseudo=true NZ_CP010961.1 Protein Homology CDS 1568946 1569969 . + 0 ID=cds1501;Parent=gene1525;Note=frameshifted;gbkey=CDS;product=2-keto-3-deoxygluconate permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1569970 1571187 . + . ID=gene1526;Name=RD04_RS07635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07635;old_locus_tag=RD04_07615 NZ_CP010961.1 Protein Homology CDS 1569970 1571187 . + 0 ID=cds1502;Parent=gene1526;Dbxref=Genbank:WP_010930574.1;Name=WP_010930574.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930574.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1571184 1572239 . + . ID=gene1527;Name=RD04_RS07640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07640;old_locus_tag=RD04_07620 NZ_CP010961.1 Protein Homology CDS 1571184 1572239 . + 0 ID=cds1503;Parent=gene1527;Dbxref=Genbank:WP_010930575.1;Name=WP_010930575.1;gbkey=CDS;product=4-hydroxythreonine-4-phosphate dehydrogenase;protein_id=WP_010930575.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1572244 1573146 . + . ID=gene1528;Name=RD04_RS07645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07645;old_locus_tag=RD04_07625 NZ_CP010961.1 Protein Homology CDS 1572244 1573146 . + 0 ID=cds1504;Parent=gene1528;Dbxref=Genbank:WP_003818670.1;Name=WP_003818670.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_003818670.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1573223 1574095 . + . ID=gene1529;Name=RD04_RS07650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07650;old_locus_tag=RD04_07630 NZ_CP010961.1 Protein Homology CDS 1573223 1574095 . + 0 ID=cds1505;Parent=gene1529;Dbxref=Genbank:WP_010930576.1;Name=WP_010930576.1;gbkey=CDS;product=molybdenum cofactor biosysynthesis protein;protein_id=WP_010930576.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1574226 1574594 . + . ID=gene1530;Name=RD04_RS07655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07655;old_locus_tag=RD04_07635 NZ_CP010961.1 Protein Homology CDS 1574226 1574594 . + 0 ID=cds1506;Parent=gene1530;Dbxref=Genbank:WP_003818672.1;Name=WP_003818672.1;gbkey=CDS;product=aspartate 1-decarboxylase;protein_id=WP_003818672.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1574652 1575698 . + . ID=gene1531;Name=RD04_RS07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07660;old_locus_tag=RD04_07640 NZ_CP010961.1 Protein Homology CDS 1574652 1575698 . + 0 ID=cds1507;Parent=gene1531;Dbxref=Genbank:WP_010930577.1;Name=WP_010930577.1;Note=catalyzes the formation of 3%2C6-dideoxy-D-glycero-D-glycero-4-hexulose;gbkey=CDS;product=CDP-6-deoxy-delta-3%2C4-glucoseen reductase;protein_id=WP_010930577.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1575894 1577150 . + . ID=gene1532;Name=RD04_RS07665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07665;old_locus_tag=RD04_07645 NZ_CP010961.1 Protein Homology CDS 1575894 1577150 . + 0 ID=cds1508;Parent=gene1532;Dbxref=Genbank:WP_010930578.1;Name=WP_010930578.1;gbkey=CDS;product=D-amino-acid dehydrogenase;protein_id=WP_010930578.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1577155 1578492 . + . ID=gene1533;Name=RD04_RS07670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07670;old_locus_tag=RD04_07650 NZ_CP010961.1 Protein Homology CDS 1577155 1578492 . + 0 ID=cds1509;Parent=gene1533;Dbxref=Genbank:WP_003810623.1;Name=WP_003810623.1;gbkey=CDS;product=glycerol-3-phosphate ABC transporter substrate-binding protein;protein_id=WP_003810623.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1578642 1579598 . - . ID=gene1534;Name=RD04_RS07675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07675;old_locus_tag=RD04_07655 NZ_CP010961.1 Protein Homology CDS 1578642 1579598 . - 0 ID=cds1510;Parent=gene1534;Dbxref=Genbank:WP_050818134.1;Name=WP_050818134.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_050818134.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1579695 1581069 . + . ID=gene1535;Name=RD04_RS07680;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07680;pseudo=true NZ_CP010961.1 Protein Homology CDS 1579695 1581069 . + 0 ID=cds1511;Parent=gene1535;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1581056 1581421 . + . ID=gene1536;Name=RD04_RS07685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07685;old_locus_tag=RD04_07670 NZ_CP010961.1 Protein Homology CDS 1581056 1581421 . + 0 ID=cds1512;Parent=gene1536;Dbxref=Genbank:WP_033446181.1;Name=WP_033446181.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446181.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1581469 1583043 . + . ID=gene1537;Name=RD04_RS07690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07690;old_locus_tag=RD04_07675 NZ_CP010961.1 Protein Homology CDS 1581469 1583043 . + 0 ID=cds1513;Parent=gene1537;Dbxref=Genbank:WP_010930581.1;Name=WP_010930581.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930581.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1583096 1584040 . + . ID=gene1538;Name=RD04_RS07695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07695;old_locus_tag=RD04_07680 NZ_CP010961.1 Protein Homology CDS 1583096 1584040 . + 0 ID=cds1514;Parent=gene1538;Dbxref=Genbank:WP_003810637.1;Name=WP_003810637.1;gbkey=CDS;product=peptide ABC transporter;protein_id=WP_003810637.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1583968 1584888 . + . ID=gene1539;Name=RD04_RS07700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07700;old_locus_tag=RD04_07685 NZ_CP010961.1 Protein Homology CDS 1583968 1584888 . + 0 ID=cds1515;Parent=gene1539;Dbxref=Genbank:WP_061363657.1;Name=WP_061363657.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_061363657.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1584881 1586515 . + . ID=gene1540;Name=RD04_RS07705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07705;old_locus_tag=RD04_07690 NZ_CP010961.1 Protein Homology CDS 1584881 1586515 . + 0 ID=cds1516;Parent=gene1540;Dbxref=Genbank:WP_010930583.1;Name=WP_010930583.1;Note=with YejAEF is involved in resistance to microcin C;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930583.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1586512 1587867 . + . ID=gene1541;Name=RD04_RS07710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07710;old_locus_tag=RD04_07695 NZ_CP010961.1 Protein Homology CDS 1586512 1587867 . + 0 ID=cds1517;Parent=gene1541;Dbxref=Genbank:WP_010930584.1;Name=WP_010930584.1;gbkey=CDS;product=amidase;protein_id=WP_010930584.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1588204 1588777 . + . ID=gene1542;Name=RD04_RS07715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07715;old_locus_tag=RD04_07700;pseudo=true NZ_CP010961.1 Protein Homology CDS 1588204 1588777 . + 0 ID=cds1518;Parent=gene1542;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1588774 1590351 . + . ID=gene1543;Name=RD04_RS07720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07720;old_locus_tag=RD04_07705 NZ_CP010961.1 Protein Homology CDS 1588774 1590351 . + 0 ID=cds1519;Parent=gene1543;Dbxref=Genbank:WP_010930585.1;Name=WP_010930585.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010930585.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1590355 1591629 . + . ID=gene1544;Name=RD04_RS07725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07725;old_locus_tag=RD04_07710 NZ_CP010961.1 Protein Homology CDS 1590355 1591629 . + 0 ID=cds1520;Parent=gene1544;Dbxref=Genbank:WP_010930586.1;Name=WP_010930586.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930586.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1591727 1592101 . + . ID=gene1545;Name=RD04_RS07730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07730;old_locus_tag=RD04_07715 NZ_CP010961.1 Protein Homology CDS 1591727 1592101 . + 0 ID=cds1521;Parent=gene1545;Dbxref=Genbank:WP_010930587.1;Name=WP_010930587.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930587.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1592098 1593824 . + . ID=gene1546;Name=RD04_RS07735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07735;old_locus_tag=RD04_07720;pseudo=true NZ_CP010961.1 Protein Homology CDS 1592098 1593824 . + 0 ID=cds1522;Parent=gene1546;Note=frameshifted;gbkey=CDS;product=general secretion pathway protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1593817 1594950 . + . ID=gene1547;Name=RD04_RS07740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07740;old_locus_tag=RD04_07725 NZ_CP010961.1 Protein Homology CDS 1593817 1594950 . + 0 ID=cds1523;Parent=gene1547;Dbxref=Genbank:WP_010930588.1;Name=WP_010930588.1;gbkey=CDS;product=general secretion pathway protein;protein_id=WP_010930588.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1594988 1595593 . + . ID=gene1548;Name=RD04_RS07745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07745;old_locus_tag=RD04_07730 NZ_CP010961.1 Protein Homology CDS 1594988 1595593 . + 0 ID=cds1524;Parent=gene1548;Dbxref=Genbank:WP_003810661.1;Name=WP_003810661.1;gbkey=CDS;product=prepilin-type N-terminal cleavage/methylation domain-containing protein;protein_id=WP_003810661.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1595590 1596408 . + . ID=gene1549;Name=RD04_RS07750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07750;old_locus_tag=RD04_07735 NZ_CP010961.1 Protein Homology CDS 1595590 1596408 . + 0 ID=cds1525;Parent=gene1549;Dbxref=Genbank:WP_010930589.1;Name=WP_010930589.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930589.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1596480 1599104 . + . ID=gene1550;Name=RD04_RS07755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07755;old_locus_tag=RD04_07740 NZ_CP010961.1 Protein Homology CDS 1596480 1599104 . + 0 ID=cds1526;Parent=gene1550;Dbxref=Genbank:WP_010930590.1;Name=WP_010930590.1;gbkey=CDS;product=alanine--tRNA ligase;protein_id=WP_010930590.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1599091 1599345 . + . ID=gene1551;Name=RD04_RS07760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07760;old_locus_tag=RD04_07745 NZ_CP010961.1 Protein Homology CDS 1599091 1599345 . + 0 ID=cds1527;Parent=gene1551;Dbxref=Genbank:WP_004568544.1;Name=WP_004568544.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004568544.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1599412 1599993 . - . ID=gene1552;Name=RD04_RS07765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07765;old_locus_tag=RD04_07750 NZ_CP010961.1 Protein Homology CDS 1599412 1599993 . - 0 ID=cds1528;Parent=gene1552;Dbxref=Genbank:WP_010930591.1;Name=WP_010930591.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930591.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1600297 1600557 . + . ID=gene1553;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=RD04_RS07770;old_locus_tag=RD04_07755 NZ_CP010961.1 Protein Homology CDS 1600297 1600557 . + 0 ID=cds1529;Parent=gene1553;Dbxref=Genbank:WP_010926757.1;Name=WP_010926757.1;Note=binds to lower part of 30S body where it stabilizes two domains%3B required for efficient assembly of 30S%3B in Escherichia coli this protein has nuclease activity;gbkey=CDS;gene=rpsP;product=30S ribosomal protein S16;protein_id=WP_010926757.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1600723 1601346 . + . ID=gene1554;Name=RD04_RS07775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07775;old_locus_tag=RD04_07760 NZ_CP010961.1 Protein Homology CDS 1600723 1601346 . + 0 ID=cds1530;Parent=gene1554;Dbxref=Genbank:WP_014905757.1;Name=WP_014905757.1;gbkey=CDS;product=ribosome maturation factor RimM;protein_id=WP_014905757.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1601346 1602119 . + . ID=gene1555;Name=RD04_RS07780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07780;old_locus_tag=RD04_07765 NZ_CP010961.1 Protein Homology CDS 1601346 1602119 . + 0 ID=cds1531;Parent=gene1555;Dbxref=Genbank:WP_003816734.1;Name=WP_003816734.1;gbkey=CDS;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=WP_003816734.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1602116 1603324 . - . ID=gene1556;Name=RD04_RS07785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07785;old_locus_tag=RD04_07770 NZ_CP010961.1 Protein Homology CDS 1602116 1603324 . - 0 ID=cds1532;Parent=gene1556;Dbxref=Genbank:WP_010930593.1;Name=WP_010930593.1;gbkey=CDS;product=class V aminotransferase;protein_id=WP_010930593.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1603350 1603823 . - . ID=gene1557;Name=RD04_RS07790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07790;old_locus_tag=RD04_07775 NZ_CP010961.1 Protein Homology CDS 1603350 1603823 . - 0 ID=cds1533;Parent=gene1557;Dbxref=Genbank:WP_010930594.1;Name=WP_010930594.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930594.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1603897 1604847 . - . ID=gene1558;Name=RD04_RS07795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07795;old_locus_tag=RD04_07780 NZ_CP010961.1 Protein Homology CDS 1603897 1604847 . - 0 ID=cds1534;Parent=gene1558;Dbxref=Genbank:WP_010930048.1;Name=WP_010930048.1;gbkey=CDS;product=transposase;protein_id=WP_010930048.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1604946 1606295 . - . ID=gene1559;Name=RD04_RS07800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07800;old_locus_tag=RD04_07785 NZ_CP010961.1 Protein Homology CDS 1604946 1606295 . - 0 ID=cds1535;Parent=gene1559;Dbxref=Genbank:WP_010930796.1;Name=WP_010930796.1;gbkey=CDS;product=two-component sensor histidine kinase;protein_id=WP_010930796.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1606292 1606931 . - . ID=gene1560;Name=RD04_RS07805;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07805;old_locus_tag=RD04_07790;pseudo=true NZ_CP010961.1 Protein Homology CDS 1606292 1606931 . - 0 ID=cds1536;Parent=gene1560;Note=frameshifted;gbkey=CDS;product=DNA-binding response regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1607061 1607816 . + . ID=gene1561;Name=RD04_RS07810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07810;old_locus_tag=RD04_07795 NZ_CP010961.1 Protein Homology CDS 1607061 1607816 . + 0 ID=cds1537;Parent=gene1561;Dbxref=Genbank:WP_023852900.1;Name=WP_023852900.1;gbkey=CDS;product=MltA-interacting protein MipA;protein_id=WP_023852900.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1607909 1610791 . - . ID=gene1562;Name=RD04_RS07815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07815;old_locus_tag=RD04_07800 NZ_CP010961.1 Protein Homology CDS 1607909 1610791 . - 0 ID=cds1538;Parent=gene1562;Dbxref=Genbank:WP_010930794.1;Name=WP_010930794.1;gbkey=CDS;product=valine--tRNA ligase;protein_id=WP_010930794.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1611114 1611539 . + . ID=gene1563;Name=RD04_RS07820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07820;old_locus_tag=RD04_07805 NZ_CP010961.1 Protein Homology CDS 1611114 1611539 . + 0 ID=cds1539;Parent=gene1563;Dbxref=Genbank:WP_003810689.1;Name=WP_003810689.1;Note=catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate;gbkey=CDS;product=nucleoside-diphosphate kinase;protein_id=WP_003810689.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1611567 1612715 . + . ID=gene1564;Name=RD04_RS07825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07825;old_locus_tag=RD04_07810 NZ_CP010961.1 Protein Homology CDS 1611567 1612715 . + 0 ID=cds1540;Parent=gene1564;Dbxref=Genbank:WP_004568542.1;Name=WP_004568542.1;gbkey=CDS;product=23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN;protein_id=WP_004568542.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1612712 1613218 . + . ID=gene1565;Name=RD04_RS07830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07830;old_locus_tag=RD04_07815 NZ_CP010961.1 Protein Homology CDS 1612712 1613218 . + 0 ID=cds1541;Parent=gene1565;Dbxref=Genbank:WP_003810693.1;Name=WP_003810693.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003810693.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1613234 1614520 . + . ID=gene1566;Name=ispG;gbkey=Gene;gene=ispG;gene_biotype=protein_coding;locus_tag=RD04_RS07835;old_locus_tag=RD04_07820 NZ_CP010961.1 Protein Homology CDS 1613234 1614520 . + 0 ID=cds1542;Parent=gene1566;Dbxref=Genbank:WP_033446257.1;Name=WP_033446257.1;Note=catalyzes the conversion of 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate%3B involved in isoprenoid synthesis;gbkey=CDS;gene=ispG;product=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;protein_id=WP_033446257.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1614570 1615865 . + . ID=gene1567;Name=RD04_RS07840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07840;old_locus_tag=RD04_07825 NZ_CP010961.1 Protein Homology CDS 1614570 1615865 . + 0 ID=cds1543;Parent=gene1567;Dbxref=Genbank:WP_033446258.1;Name=WP_033446258.1;gbkey=CDS;product=histidine--tRNA ligase;protein_id=WP_033446258.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1615867 1616505 . + . ID=gene1568;Name=RD04_RS07845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07845;old_locus_tag=RD04_07830 NZ_CP010961.1 Protein Homology CDS 1615867 1616505 . + 0 ID=cds1544;Parent=gene1568;Dbxref=Genbank:WP_010930791.1;Name=WP_010930791.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930791.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1616511 1617668 . + . ID=gene1569;Name=RD04_RS07850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07850;old_locus_tag=RD04_07835 NZ_CP010961.1 Protein Homology CDS 1616511 1617668 . + 0 ID=cds1545;Parent=gene1569;Dbxref=Genbank:WP_023852925.1;Name=WP_023852925.1;gbkey=CDS;product=outer membrane protein assembly factor BamB;protein_id=WP_023852925.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1617695 1619050 . + . ID=gene1570;Name=RD04_RS07855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07855;old_locus_tag=RD04_07840 NZ_CP010961.1 Protein Homology CDS 1617695 1619050 . + 0 ID=cds1546;Parent=gene1570;Dbxref=Genbank:WP_003810703.1;Name=WP_003810703.1;gbkey=CDS;product=ribosome biogenesis GTPase Der;protein_id=WP_003810703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1619054 1620124 . + . ID=gene1571;Name=RD04_RS07860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07860;old_locus_tag=RD04_07845 NZ_CP010961.1 Protein Homology CDS 1619054 1620124 . + 0 ID=cds1547;Parent=gene1571;Dbxref=Genbank:WP_010930790.1;Name=WP_010930790.1;Note=catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis;gbkey=CDS;product=histidinol-phosphate aminotransferase 1;protein_id=WP_010930790.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1620263 1620499 . + . ID=gene1572;Name=RD04_RS07865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07865;old_locus_tag=RD04_07850 NZ_CP010961.1 Protein Homology CDS 1620263 1620499 . + 0 ID=cds1548;Parent=gene1572;Dbxref=Genbank:WP_003810707.1;Name=WP_003810707.1;gbkey=CDS;product=RNA-binding protein Hfq;protein_id=WP_003810707.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1620587 1621693 . + . ID=gene1573;Name=RD04_RS07870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07870;old_locus_tag=RD04_07855 NZ_CP010961.1 Protein Homology CDS 1620587 1621693 . + 0 ID=cds1549;Parent=gene1573;Dbxref=Genbank:WP_010930789.1;Name=WP_010930789.1;gbkey=CDS;product=GTPase HflX;protein_id=WP_010930789.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1621659 1622963 . + . ID=gene1574;Name=RD04_RS07875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07875;old_locus_tag=RD04_07860 NZ_CP010961.1 Protein Homology CDS 1621659 1622963 . + 0 ID=cds1550;Parent=gene1574;Dbxref=Genbank:WP_010930788.1;Name=WP_010930788.1;gbkey=CDS;product=protease modulator HflK;protein_id=WP_010930788.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1622982 1623881 . + . ID=gene1575;Name=RD04_RS07880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07880;old_locus_tag=RD04_07865 NZ_CP010961.1 Protein Homology CDS 1622982 1623881 . + 0 ID=cds1551;Parent=gene1575;Dbxref=Genbank:WP_010930787.1;Name=WP_010930787.1;gbkey=CDS;product=protease modulator HflC;protein_id=WP_010930787.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1624065 1625222 . + . ID=gene1576;Name=hisZ;gbkey=Gene;gene=hisZ;gene_biotype=protein_coding;locus_tag=RD04_RS07885;old_locus_tag=RD04_07870 NZ_CP010961.1 Protein Homology CDS 1624065 1625222 . + 0 ID=cds1552;Parent=gene1576;Dbxref=Genbank:WP_010930786.1;Name=WP_010930786.1;Note=May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine;gbkey=CDS;gene=hisZ;product=ATP phosphoribosyltransferase regulatory subunit;protein_id=WP_010930786.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1625299 1626594 . + . ID=gene1577;Name=RD04_RS07890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07890;old_locus_tag=RD04_07875 NZ_CP010961.1 Protein Homology CDS 1625299 1626594 . + 0 ID=cds1553;Parent=gene1577;Dbxref=Genbank:WP_023852902.1;Name=WP_023852902.1;Note=catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis;gbkey=CDS;product=adenylosuccinate synthetase;protein_id=WP_023852902.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1626708 1627247 . + . ID=gene1578;Name=RD04_RS07895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07895;old_locus_tag=RD04_07880 NZ_CP010961.1 Protein Homology CDS 1626708 1627247 . + 0 ID=cds1554;Parent=gene1578;Dbxref=Genbank:WP_003810720.1;Name=WP_003810720.1;gbkey=CDS;product=nicotinate phosphoribosyltransferase;protein_id=WP_003810720.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1627525 1627737 . + . ID=gene1579;Name=RD04_RS07900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07900;old_locus_tag=RD04_07885 NZ_CP010961.1 Protein Homology CDS 1627525 1627737 . + 0 ID=cds1555;Parent=gene1579;Dbxref=Genbank:WP_006218592.1;Name=WP_006218592.1;gbkey=CDS;product=30S ribosomal protein S21;protein_id=WP_006218592.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1627757 1629787 . + . ID=gene1580;Name=RD04_RS07905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07905;old_locus_tag=RD04_07890 NZ_CP010961.1 Protein Homology CDS 1627757 1629787 . + 0 ID=cds1556;Parent=gene1580;Dbxref=Genbank:WP_010930784.1;Name=WP_010930784.1;gbkey=CDS;product=DNA primase;protein_id=WP_010930784.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1630473 1632755 . + . ID=gene1581;Name=RD04_RS07910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07910;old_locus_tag=RD04_07895 NZ_CP010961.1 Protein Homology CDS 1630473 1632755 . + 0 ID=cds1557;Parent=gene1581;Dbxref=Genbank:WP_010930783.1;Name=WP_010930783.1;gbkey=CDS;product=RNA polymerase sigma factor RpoD;protein_id=WP_010930783.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1632765 1632843 . + . ID=gene1582;Name=RD04_RS07915;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS07915;old_locus_tag=RD04_07900 NZ_CP010961.1 tRNAscan-SE tRNA 1632765 1632843 . + . ID=rna24;Parent=gene1582;anticodon=(pos:1632801..1632803);gbkey=tRNA;product=tRNA-Met NZ_CP010961.1 tRNAscan-SE exon 1632765 1632843 . + . ID=id29;Parent=rna24;anticodon=(pos:1632801..1632803);gbkey=tRNA;product=tRNA-Met NZ_CP010961.1 RefSeq gene 1633165 1633464 . - . ID=gene1583;Name=RD04_RS07920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07920;old_locus_tag=RD04_07905 NZ_CP010961.1 Protein Homology CDS 1633165 1633464 . - 0 ID=cds1558;Parent=gene1583;Dbxref=Genbank:WP_003816708.1;Name=WP_003816708.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003816708.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1633749 1634162 . + . ID=gene1584;Name=RD04_RS07925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07925;old_locus_tag=RD04_07910 NZ_CP010961.1 Protein Homology CDS 1633749 1634162 . + 0 ID=cds1559;Parent=gene1584;Dbxref=Genbank:WP_047122784.1;Name=WP_047122784.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_047122784.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1634122 1635072 . - . ID=gene1585;Name=RD04_RS07930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07930;old_locus_tag=RD04_07915 NZ_CP010961.1 Protein Homology CDS 1634122 1635072 . - 0 ID=cds1560;Parent=gene1585;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1635275 1636357 . + . ID=gene1586;Name=RD04_RS07935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07935;old_locus_tag=RD04_07920 NZ_CP010961.1 Protein Homology CDS 1635275 1636357 . + 0 ID=cds1561;Parent=gene1586;Dbxref=Genbank:WP_003818566.1;Name=WP_003818566.1;gbkey=CDS;product=AI-2E family transporter;protein_id=WP_003818566.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1636373 1637134 . - . ID=gene1587;Name=RD04_RS07940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07940;old_locus_tag=RD04_07925 NZ_CP010961.1 Protein Homology CDS 1636373 1637134 . - 0 ID=cds1562;Parent=gene1587;Dbxref=Genbank:WP_003810400.1;Name=WP_003810400.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003810400.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1637131 1638054 . - . ID=gene1588;Name=RD04_RS07945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07945;old_locus_tag=RD04_07930 NZ_CP010961.1 Protein Homology CDS 1637131 1638054 . - 0 ID=cds1563;Parent=gene1588;Dbxref=Genbank:WP_010930781.1;Name=WP_010930781.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930781.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1638153 1638653 . - . ID=gene1589;Name=RD04_RS07950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07950;old_locus_tag=RD04_07935 NZ_CP010961.1 Protein Homology CDS 1638153 1638653 . - 0 ID=cds1564;Parent=gene1589;Dbxref=Genbank:WP_010930780.1;Name=WP_010930780.1;gbkey=CDS;product=GCN5 family N-acetyltransferase;protein_id=WP_010930780.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1638686 1639429 . - . ID=gene1590;Name=RD04_RS07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07955;old_locus_tag=RD04_07940 NZ_CP010961.1 Protein Homology CDS 1638686 1639429 . - 0 ID=cds1565;Parent=gene1590;Dbxref=Genbank:WP_010930779.1;Name=WP_010930779.1;gbkey=CDS;product=permease;protein_id=WP_010930779.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1639525 1639764 . - . ID=gene1591;Name=RD04_RS07960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07960;old_locus_tag=RD04_07945 NZ_CP010961.1 Protein Homology CDS 1639525 1639764 . - 0 ID=cds1566;Parent=gene1591;Dbxref=Genbank:WP_010930778.1;Name=WP_010930778.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930778.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1639778 1639930 . - . ID=gene1592;Name=RD04_RS07965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07965;old_locus_tag=RD04_07950 NZ_CP010961.1 Protein Homology CDS 1639778 1639930 . - 0 ID=cds1567;Parent=gene1592;Dbxref=Genbank:WP_010930777.1;Name=WP_010930777.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010930777.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1640016 1641506 . - . ID=gene1593;Name=RD04_RS07970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07970;old_locus_tag=RD04_07955 NZ_CP010961.1 Protein Homology CDS 1640016 1641506 . - 0 ID=cds1568;Parent=gene1593;Dbxref=Genbank:WP_010930776.1;Name=WP_010930776.1;gbkey=CDS;product=ferredoxin;protein_id=WP_010930776.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1641598 1642536 . - . ID=gene1594;Name=RD04_RS07975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07975;old_locus_tag=RD04_07960 NZ_CP010961.1 Protein Homology CDS 1641598 1642536 . - 0 ID=cds1569;Parent=gene1594;Dbxref=Genbank:WP_010930775.1;Name=WP_010930775.1;gbkey=CDS;product=cytochrome c oxidase subunit III;protein_id=WP_010930775.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1642533 1642709 . - . ID=gene1595;Name=RD04_RS07980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07980;old_locus_tag=RD04_07965 NZ_CP010961.1 Protein Homology CDS 1642533 1642709 . - 0 ID=cds1570;Parent=gene1595;Dbxref=Genbank:WP_003818560.1;Name=WP_003818560.1;gbkey=CDS;product=cytochrome oxidase;protein_id=WP_003818560.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1642712 1643374 . - . ID=gene1596;Name=RD04_RS07985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07985;old_locus_tag=RD04_07970 NZ_CP010961.1 Protein Homology CDS 1642712 1643374 . - 0 ID=cds1571;Parent=gene1596;Dbxref=Genbank:WP_003810383.1;Name=WP_003810383.1;gbkey=CDS;product=peptidase S41;protein_id=WP_003810383.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1643385 1644871 . - . ID=gene1597;Name=RD04_RS07990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS07990;old_locus_tag=RD04_07975;pseudo=true NZ_CP010961.1 Protein Homology CDS 1643385 1644871 . - 0 ID=cds1572;Parent=gene1597;Note=CcoN%3B FixN%3B frameshifted;gbkey=CDS;product=cytochrome C oxidase Cbb3;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1644996 1645139 . - . ID=gene1598;Name=RD04_RS07995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS07995;old_locus_tag=RD04_07980 NZ_CP010961.1 Protein Homology CDS 1644996 1645139 . - 0 ID=cds1573;Parent=gene1598;Dbxref=Genbank:WP_003810379.1;Name=WP_003810379.1;gbkey=CDS;product=outer membrane protein;protein_id=WP_003810379.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1645136 1646110 . - . ID=gene1599;Name=RD04_RS08000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08000;old_locus_tag=RD04_07985 NZ_CP010961.1 Protein Homology CDS 1645136 1646110 . - 0 ID=cds1574;Parent=gene1599;Dbxref=Genbank:WP_010930774.1;Name=WP_010930774.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930774.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1646325 1647227 . + . ID=gene1600;Name=RD04_RS08005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08005;old_locus_tag=RD04_07990 NZ_CP010961.1 GeneMarkS+ CDS 1646325 1647227 . + 0 ID=cds1575;Parent=gene1600;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1647224 1648498 . - . ID=gene1601;Name=RD04_RS08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08010;old_locus_tag=RD04_07995 NZ_CP010961.1 Protein Homology CDS 1647224 1648498 . - 0 ID=cds1576;Parent=gene1601;Dbxref=Genbank:WP_010930773.1;Name=WP_010930773.1;gbkey=CDS;product=adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA;protein_id=WP_010930773.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1648602 1649795 . + . ID=gene1602;Name=RD04_RS08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08015;old_locus_tag=RD04_08000 NZ_CP010961.1 Protein Homology CDS 1648602 1649795 . + 0 ID=cds1577;Parent=gene1602;Dbxref=Genbank:WP_010930772.1;Name=WP_010930772.1;gbkey=CDS;product=8-amino-7-oxononanoate synthase;protein_id=WP_010930772.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1649792 1650445 . + . ID=gene1603;Name=RD04_RS08020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08020;old_locus_tag=RD04_08005 NZ_CP010961.1 Protein Homology CDS 1649792 1650445 . + 0 ID=cds1578;Parent=gene1603;Dbxref=Genbank:WP_010930771.1;Name=WP_010930771.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930771.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1650442 1651878 . + . ID=gene1604;Name=RD04_RS08025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08025;old_locus_tag=RD04_08010 NZ_CP010961.1 Protein Homology CDS 1650442 1651878 . + 0 ID=cds1579;Parent=gene1604;Dbxref=Genbank:WP_010930770.1;Name=WP_010930770.1;gbkey=CDS;product=ATP-dependent dethiobiotin synthetase BioD;protein_id=WP_010930770.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1651866 1652225 . + . ID=gene1605;Name=RD04_RS08030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08030;old_locus_tag=RD04_08015 NZ_CP010961.1 Protein Homology CDS 1651866 1652225 . + 0 ID=cds1580;Parent=gene1605;Dbxref=Genbank:WP_010930769.1;Name=WP_010930769.1;gbkey=CDS;product=murein hydrolase transporter LrgA;protein_id=WP_010930769.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1652311 1652961 . + . ID=gene1606;Name=RD04_RS08035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08035;old_locus_tag=RD04_08020 NZ_CP010961.1 Protein Homology CDS 1652311 1652961 . + 0 ID=cds1581;Parent=gene1606;Dbxref=Genbank:WP_019247717.1;Name=WP_019247717.1;gbkey=CDS;product=membrane protein;protein_id=WP_019247717.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1653197 1654060 . + . ID=gene1607;Name=RD04_RS08040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08040;old_locus_tag=RD04_08025 NZ_CP010961.1 Protein Homology CDS 1653197 1654060 . + 0 ID=cds1582;Parent=gene1607;Dbxref=Genbank:WP_039250668.1;Name=WP_039250668.1;gbkey=CDS;product=integrase;protein_id=WP_039250668.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1654144 1656009 . - . ID=gene1608;Name=RD04_RS08045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08045;old_locus_tag=RD04_08030 NZ_CP010961.1 Protein Homology CDS 1654144 1656009 . - 0 ID=cds1583;Parent=gene1608;Dbxref=Genbank:WP_010930768.1;Name=WP_010930768.1;gbkey=CDS;product=sigma-54-dependent Fis family transcriptional regulator;protein_id=WP_010930768.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1656267 1657787 . + . ID=gene1609;Name=RD04_RS08050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08050;old_locus_tag=RD04_08035 NZ_CP010961.1 Protein Homology CDS 1656267 1657787 . + 0 ID=cds1584;Parent=gene1609;Dbxref=Genbank:WP_010930767.1;Name=WP_010930767.1;Note=catalyzes the oxidation of acetaldehyde%2C benzaldehyde%2C propionaldehyde and other aldehydes;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_010930767.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1657875 1658525 . - . ID=gene1610;Name=RD04_RS08055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08055;old_locus_tag=RD04_08040 NZ_CP010961.1 Protein Homology CDS 1657875 1658525 . - 0 ID=cds1585;Parent=gene1610;Dbxref=Genbank:WP_003816959.1;Name=WP_003816959.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003816959.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1658657 1659477 . + . ID=gene1611;Name=RD04_RS08060;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08060;old_locus_tag=RD04_08045;pseudo=true NZ_CP010961.1 Protein Homology CDS 1658657 1659477 . + 0 ID=cds1586;Parent=gene1611;Note=frameshifted;gbkey=CDS;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1659474 1660769 . + . ID=gene1612;Name=RD04_RS08065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08065;old_locus_tag=RD04_08050 NZ_CP010961.1 Protein Homology CDS 1659474 1660769 . + 0 ID=cds1587;Parent=gene1612;Dbxref=Genbank:WP_010930766.1;Name=WP_010930766.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930766.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1660791 1661675 . - . ID=gene1613;Name=RD04_RS08070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08070;old_locus_tag=RD04_08055 NZ_CP010961.1 Protein Homology CDS 1660791 1661675 . - 0 ID=cds1588;Parent=gene1613;Dbxref=Genbank:WP_010930765.1;Name=WP_010930765.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930765.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1661774 1662649 . + . ID=gene1614;Name=RD04_RS08075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08075;old_locus_tag=RD04_08060 NZ_CP010961.1 Protein Homology CDS 1661774 1662649 . + 0 ID=cds1589;Parent=gene1614;Dbxref=Genbank:WP_010930764.1;Name=WP_010930764.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010930764.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1662639 1662995 . - . ID=gene1615;Name=RD04_RS08080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08080;old_locus_tag=RD04_08065 NZ_CP010961.1 Protein Homology CDS 1662639 1662995 . - 0 ID=cds1590;Parent=gene1615;Dbxref=Genbank:WP_003816964.1;Name=WP_003816964.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003816964.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1663126 1664100 . + . ID=gene1616;Name=RD04_RS08085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08085;old_locus_tag=RD04_08070 NZ_CP010961.1 Protein Homology CDS 1663126 1664100 . + 0 ID=cds1591;Parent=gene1616;Dbxref=Genbank:WP_010930763.1;Name=WP_010930763.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_010930763.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1664230 1664409 . - . ID=gene1617;Name=RD04_RS08090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08090;old_locus_tag=RD04_08075 NZ_CP010961.1 Protein Homology CDS 1664230 1664409 . - 0 ID=cds1592;Parent=gene1617;Dbxref=Genbank:WP_003812228.1;Name=WP_003812228.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812228.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1664552 1665031 . + . ID=gene1618;Name=RD04_RS08095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08095;old_locus_tag=RD04_08080 NZ_CP010961.1 Protein Homology CDS 1664552 1665031 . + 0 ID=cds1593;Parent=gene1618;Dbxref=Genbank:WP_010930762.1;Name=WP_010930762.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930762.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1665042 1665878 . - . ID=gene1619;Name=RD04_RS08100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08100;old_locus_tag=RD04_08085 NZ_CP010961.1 Protein Homology CDS 1665042 1665878 . - 0 ID=cds1594;Parent=gene1619;Dbxref=Genbank:WP_010930761.1;Name=WP_010930761.1;gbkey=CDS;product=alpha/beta hydrolase;protein_id=WP_010930761.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1665991 1666362 . + . ID=gene1620;Name=RD04_RS08105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08105;old_locus_tag=RD04_08090 NZ_CP010961.1 Protein Homology CDS 1665991 1666362 . + 0 ID=cds1595;Parent=gene1620;Dbxref=Genbank:WP_003816971.1;Name=WP_003816971.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003816971.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1666359 1666910 . + . ID=gene1621;Name=RD04_RS08110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08110;old_locus_tag=RD04_08095 NZ_CP010961.1 Protein Homology CDS 1666359 1666910 . + 0 ID=cds1596;Parent=gene1621;Dbxref=Genbank:WP_010930760.1;Name=WP_010930760.1;gbkey=CDS;product=ATPase;protein_id=WP_010930760.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1666926 1668617 . - . ID=gene1622;Name=RD04_RS08115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08115;old_locus_tag=RD04_08100 NZ_CP010961.1 Protein Homology CDS 1666926 1668617 . - 0 ID=cds1597;Parent=gene1622;Dbxref=Genbank:WP_003816975.1;Name=WP_003816975.1;gbkey=CDS;product=sodium-independent anion transporter;protein_id=WP_003816975.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1668666 1669346 . - . ID=gene1623;Name=RD04_RS08120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08120;old_locus_tag=RD04_08105 NZ_CP010961.1 Protein Homology CDS 1668666 1669346 . - 0 ID=cds1598;Parent=gene1623;Dbxref=Genbank:WP_003816977.1;Name=WP_003816977.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_003816977.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1669594 1670058 . - . ID=gene1624;Name=RD04_RS08125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08125;old_locus_tag=RD04_08110 NZ_CP010961.1 Protein Homology CDS 1669594 1670058 . - 0 ID=cds1599;Parent=gene1624;Dbxref=Genbank:WP_014905663.1;Name=WP_014905663.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014905663.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1670228 1671156 . + . ID=gene1625;Name=RD04_RS08130;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08130;old_locus_tag=RD04_08115;pseudo=true NZ_CP010961.1 Protein Homology CDS 1670228 1671156 . + 0 ID=cds1600;Parent=gene1625;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1671169 1671816 . - . ID=gene1626;Name=RD04_RS08135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08135;old_locus_tag=RD04_08120 NZ_CP010961.1 Protein Homology CDS 1671169 1671816 . - 0 ID=cds1601;Parent=gene1626;Dbxref=Genbank:WP_019247659.1;Name=WP_019247659.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247659.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1671890 1673707 . - . ID=gene1627;Name=RD04_RS08140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08140;old_locus_tag=RD04_08125 NZ_CP010961.1 Protein Homology CDS 1671890 1673707 . - 0 ID=cds1602;Parent=gene1627;Dbxref=Genbank:WP_023997035.1;Name=WP_023997035.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_023997035.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1673791 1674741 . - . ID=gene1628;Name=RD04_RS08145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08145;old_locus_tag=RD04_08130 NZ_CP010961.1 Protein Homology CDS 1673791 1674741 . - 0 ID=cds1603;Parent=gene1628;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1674840 1675376 . - . ID=gene1629;Name=RD04_RS08150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08150;old_locus_tag=RD04_08135 NZ_CP010961.1 Protein Homology CDS 1674840 1675376 . - 0 ID=cds1604;Parent=gene1629;Dbxref=Genbank:WP_024000127.1;Name=WP_024000127.1;gbkey=CDS;product=acetyltransferase (GNAT) domain protein;protein_id=WP_024000127.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1675442 1676344 . + . ID=gene1630;Name=RD04_RS08155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08155;old_locus_tag=RD04_08140 NZ_CP010961.1 GeneMarkS+ CDS 1675442 1676344 . + 0 ID=cds1605;Parent=gene1630;Dbxref=Genbank:WP_023994703.1;Name=WP_023994703.1;gbkey=CDS;product=transposase;protein_id=WP_023994703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1676363 1676710 . - . ID=gene1631;Name=RD04_RS08160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08160;old_locus_tag=RD04_08145 NZ_CP010961.1 Protein Homology CDS 1676363 1676710 . - 0 ID=cds1606;Parent=gene1631;Dbxref=Genbank:WP_003812199.1;Name=WP_003812199.1;gbkey=CDS;product=aldehyde-activating protein;protein_id=WP_003812199.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1676739 1678178 . - . ID=gene1632;Name=RD04_RS08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08165;old_locus_tag=RD04_08150 NZ_CP010961.1 Protein Homology CDS 1676739 1678178 . - 0 ID=cds1607;Parent=gene1632;Dbxref=Genbank:WP_010930755.1;Name=WP_010930755.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010930755.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1678197 1678592 . - . ID=gene1633;Name=RD04_RS08170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08170;old_locus_tag=RD04_08155 NZ_CP010961.1 Protein Homology CDS 1678197 1678592 . - 0 ID=cds1608;Parent=gene1633;Dbxref=Genbank:WP_010930754.1;Name=WP_010930754.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930754.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1678767 1679375 . + . ID=gene1634;Name=RD04_RS08175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08175;old_locus_tag=RD04_08160 NZ_CP010961.1 Protein Homology CDS 1678767 1679375 . + 0 ID=cds1609;Parent=gene1634;Dbxref=Genbank:WP_003812191.1;Name=WP_003812191.1;gbkey=CDS;product=peptidase S16;protein_id=WP_003812191.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1679388 1680206 . + . ID=gene1635;Name=RD04_RS08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08180;old_locus_tag=RD04_08165 NZ_CP010961.1 Protein Homology CDS 1679388 1680206 . + 0 ID=cds1610;Parent=gene1635;Dbxref=Genbank:WP_010930753.1;Name=WP_010930753.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930753.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1680158 1681132 . - . ID=gene1636;Name=RD04_RS08185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08185;old_locus_tag=RD04_08170 NZ_CP010961.1 Protein Homology CDS 1680158 1681132 . - 0 ID=cds1611;Parent=gene1636;Dbxref=Genbank:WP_010930752.1;Name=WP_010930752.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_010930752.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1681161 1682222 . - . ID=gene1637;Name=RD04_RS08190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08190;old_locus_tag=RD04_08175 NZ_CP010961.1 Protein Homology CDS 1681161 1682222 . - 0 ID=cds1612;Parent=gene1637;Dbxref=Genbank:WP_003812183.1;Name=WP_003812183.1;gbkey=CDS;product=cytochrome oxidase I;protein_id=WP_003812183.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1682219 1684435 . - . ID=gene1638;Name=RD04_RS08195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08195;old_locus_tag=RD04_08180 NZ_CP010961.1 Protein Homology CDS 1682219 1684435 . - 0 ID=cds1613;Parent=gene1638;Dbxref=Genbank:WP_010930751.1;Name=WP_010930751.1;gbkey=CDS;product=aldehyde oxidase;protein_id=WP_010930751.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1684449 1684907 . - . ID=gene1639;Name=RD04_RS08200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08200;old_locus_tag=RD04_08185 NZ_CP010961.1 Protein Homology CDS 1684449 1684907 . - 0 ID=cds1614;Parent=gene1639;Dbxref=Genbank:WP_010930750.1;Name=WP_010930750.1;gbkey=CDS;product=(2Fe-2S)-binding protein;protein_id=WP_010930750.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1685065 1685409 . - . ID=gene1640;Name=RD04_RS08205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08205;old_locus_tag=RD04_08190 NZ_CP010961.1 Protein Homology CDS 1685065 1685409 . - 0 ID=cds1615;Parent=gene1640;Dbxref=Genbank:WP_003812179.1;Name=WP_003812179.1;gbkey=CDS;product=exported protein;protein_id=WP_003812179.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1685566 1686471 . + . ID=gene1641;Name=RD04_RS08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08210;old_locus_tag=RD04_08195 NZ_CP010961.1 Protein Homology CDS 1685566 1686471 . + 0 ID=cds1616;Parent=gene1641;Dbxref=Genbank:WP_010930749.1;Name=WP_010930749.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930749.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1686558 1687571 . + . ID=gene1642;Name=RD04_RS08215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08215;old_locus_tag=RD04_08200 NZ_CP010961.1 Protein Homology CDS 1686558 1687571 . + 0 ID=cds1617;Parent=gene1642;Dbxref=Genbank:WP_010930748.1;Name=WP_010930748.1;gbkey=CDS;product=pyridoxamine 5'-phosphate oxidase;protein_id=WP_010930748.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1687579 1688701 . - . ID=gene1643;Name=RD04_RS08220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08220;old_locus_tag=RD04_08205;pseudo=true NZ_CP010961.1 Protein Homology CDS 1687579 1688701 . - 0 ID=cds1618;Parent=gene1643;Note=frameshifted;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1688787 1689285 . - . ID=gene1644;Name=RD04_RS08225;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08225;old_locus_tag=RD04_08210;pseudo=true NZ_CP010961.1 Protein Homology CDS 1688787 1689285 . - 0 ID=cds1619;Parent=gene1644;Note=frameshifted;gbkey=CDS;product=lysine transporter LysE;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1689551 1690567 . + . ID=gene1645;Name=RD04_RS08230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08230;old_locus_tag=RD04_08215 NZ_CP010961.1 Protein Homology CDS 1689551 1690567 . + 0 ID=cds1620;Parent=gene1645;Dbxref=Genbank:WP_010930153.1;Name=WP_010930153.1;gbkey=CDS;product=transposase;protein_id=WP_010930153.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1690710 1692062 . - . ID=gene1646;Name=RD04_RS08235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08235;old_locus_tag=RD04_08220 NZ_CP010961.1 Protein Homology CDS 1690710 1692062 . - 0 ID=cds1621;Parent=gene1646;Dbxref=Genbank:WP_019247707.1;Name=WP_019247707.1;gbkey=CDS;product=glutathione-disulfide reductase;protein_id=WP_019247707.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1692237 1692533 . + . ID=gene1647;Name=RD04_RS08240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08240;old_locus_tag=RD04_08225 NZ_CP010961.1 Protein Homology CDS 1692237 1692533 . + 0 ID=cds1622;Parent=gene1647;Dbxref=Genbank:WP_003812172.1;Name=WP_003812172.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812172.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1692680 1693684 . + . ID=gene1648;Name=RD04_RS08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08245;old_locus_tag=RD04_08230 NZ_CP010961.1 GeneMarkS+ CDS 1692680 1693684 . + 0 ID=cds1623;Parent=gene1648;Dbxref=Genbank:WP_041337078.1;Name=WP_041337078.1;gbkey=CDS;product=integrase;protein_id=WP_041337078.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1693671 1694621 . + . ID=gene1649;Name=RD04_RS08250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08250;old_locus_tag=RD04_08235 NZ_CP010961.1 Protein Homology CDS 1693671 1694621 . + 0 ID=cds1624;Parent=gene1649;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1695255 1695893 . + . ID=gene1650;Name=RD04_RS08255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08255;old_locus_tag=RD04_08240 NZ_CP010961.1 Protein Homology CDS 1695255 1695893 . + 0 ID=cds1625;Parent=gene1650;Dbxref=Genbank:WP_033469787.1;Name=WP_033469787.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033469787.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1695968 1696939 . + . ID=gene1651;Name=RD04_RS08260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08260;old_locus_tag=RD04_08245 NZ_CP010961.1 Protein Homology CDS 1695968 1696939 . + 0 ID=cds1626;Parent=gene1651;Dbxref=Genbank:WP_003812044.1;Name=WP_003812044.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812044.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1696943 1697797 . + . ID=gene1652;Name=RD04_RS08265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08265;old_locus_tag=RD04_08250 NZ_CP010961.1 Protein Homology CDS 1696943 1697797 . + 0 ID=cds1627;Parent=gene1652;Dbxref=Genbank:WP_010930746.1;Name=WP_010930746.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930746.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1697816 1698637 . + . ID=gene1653;Name=RD04_RS08270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08270;old_locus_tag=RD04_08255 NZ_CP010961.1 Protein Homology CDS 1697816 1698637 . + 0 ID=cds1628;Parent=gene1653;Dbxref=Genbank:WP_010930745.1;Name=WP_010930745.1;gbkey=CDS;product=hydrolase;protein_id=WP_010930745.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1698669 1699463 . + . ID=gene1654;Name=RD04_RS08275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08275;old_locus_tag=RD04_08260 NZ_CP010961.1 GeneMarkS+ CDS 1698669 1699463 . + 0 ID=cds1629;Parent=gene1654;Dbxref=Genbank:WP_019247853.1;Name=WP_019247853.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247853.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1699542 1700117 . + . ID=gene1655;Name=RD04_RS08280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08280;old_locus_tag=RD04_08265 NZ_CP010961.1 Protein Homology CDS 1699542 1700117 . + 0 ID=cds1630;Parent=gene1655;Dbxref=Genbank:WP_019247852.1;Name=WP_019247852.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247852.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1700075 1700908 . + . ID=gene1656;Name=RD04_RS08285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08285;old_locus_tag=RD04_08270 NZ_CP010961.1 Protein Homology CDS 1700075 1700908 . + 0 ID=cds1631;Parent=gene1656;Dbxref=Genbank:WP_019247851.1;Name=WP_019247851.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_019247851.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1701031 1701106 . - . ID=gene1657;Name=RD04_RS08290;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS08290;old_locus_tag=RD04_08275 NZ_CP010961.1 tRNAscan-SE tRNA 1701031 1701106 . - . ID=rna25;Parent=gene1657;anticodon=(pos:complement(1701071..1701073));gbkey=tRNA;product=tRNA-Ala NZ_CP010961.1 tRNAscan-SE exon 1701031 1701106 . - . ID=id30;Parent=rna25;anticodon=(pos:complement(1701071..1701073));gbkey=tRNA;product=tRNA-Ala NZ_CP010961.1 RefSeq gene 1701194 1702699 . - . ID=gene1658;Name=RD04_RS08295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08295;old_locus_tag=RD04_08280 NZ_CP010961.1 Protein Homology CDS 1701194 1702699 . - 0 ID=cds1632;Parent=gene1658;Dbxref=Genbank:WP_010930744.1;Name=WP_010930744.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930744.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1702741 1703523 . - . ID=gene1659;Name=RD04_RS08300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08300;old_locus_tag=RD04_08285 NZ_CP010961.1 Protein Homology CDS 1702741 1703523 . - 0 ID=cds1633;Parent=gene1659;Dbxref=Genbank:WP_003812032.1;Name=WP_003812032.1;gbkey=CDS;product=exodeoxyribonuclease III;protein_id=WP_003812032.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1703593 1704039 . - . ID=gene1660;Name=RD04_RS08305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08305;old_locus_tag=RD04_08290 NZ_CP010961.1 Protein Homology CDS 1703593 1704039 . - 0 ID=cds1634;Parent=gene1660;Dbxref=Genbank:WP_003812030.1;Name=WP_003812030.1;gbkey=CDS;product=membrane protein;protein_id=WP_003812030.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1704036 1705262 . - . ID=gene1661;Name=RD04_RS08310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08310;old_locus_tag=RD04_08295 NZ_CP010961.1 Protein Homology CDS 1704036 1705262 . - 0 ID=cds1635;Parent=gene1661;Dbxref=Genbank:WP_010930743.1;Name=WP_010930743.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930743.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1705255 1705659 . - . ID=gene1662;Name=RD04_RS08315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08315;old_locus_tag=RD04_08300 NZ_CP010961.1 Protein Homology CDS 1705255 1705659 . - 0 ID=cds1636;Parent=gene1662;Dbxref=Genbank:WP_003812026.1;Name=WP_003812026.1;gbkey=CDS;product=preprotein translocase subunit TatC;protein_id=WP_003812026.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1705819 1706121 . + . ID=gene1663;Name=RD04_RS08320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08320;old_locus_tag=RD04_08305 NZ_CP010961.1 Protein Homology CDS 1705819 1706121 . + 0 ID=cds1637;Parent=gene1663;Dbxref=Genbank:WP_003812024.1;Name=WP_003812024.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812024.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1706118 1707068 . - . ID=gene1664;Name=RD04_RS08325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08325;old_locus_tag=RD04_08310 NZ_CP010961.1 Protein Homology CDS 1706118 1707068 . - 0 ID=cds1638;Parent=gene1664;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1707290 1708192 . - . ID=gene1665;Name=RD04_RS08330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08330;old_locus_tag=RD04_08315 NZ_CP010961.1 GeneMarkS+ CDS 1707290 1708192 . - 0 ID=cds1639;Parent=gene1665;Dbxref=Genbank:WP_041337072.1;Name=WP_041337072.1;gbkey=CDS;product=integrase;protein_id=WP_041337072.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1708339 1709304 . - . ID=gene1666;Name=RD04_RS08335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08335;old_locus_tag=RD04_08320 NZ_CP010961.1 Protein Homology CDS 1708339 1709304 . - 0 ID=cds1640;Parent=gene1666;Dbxref=Genbank:WP_023852887.1;Name=WP_023852887.1;gbkey=CDS;product=tripartite tricarboxylate transporter family receptor;protein_id=WP_023852887.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1709442 1710341 . - . ID=gene1667;Name=RD04_RS08340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08340;old_locus_tag=RD04_08325 NZ_CP010961.1 Protein Homology CDS 1709442 1710341 . - 0 ID=cds1641;Parent=gene1667;Dbxref=Genbank:WP_010930740.1;Name=WP_010930740.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930740.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1710869 1712695 . + . ID=gene1668;Name=RD04_RS08345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08345;old_locus_tag=RD04_08330 NZ_CP010961.1 Protein Homology CDS 1710869 1712695 . + 0 ID=cds1642;Parent=gene1668;Dbxref=Genbank:WP_019247464.1;Name=WP_019247464.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247464.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1712936 1714423 . + . ID=gene1669;Name=RD04_RS08350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08350;old_locus_tag=RD04_08335 NZ_CP010961.1 Protein Homology CDS 1712936 1714423 . + 0 ID=cds1643;Parent=gene1669;Dbxref=Genbank:WP_010930739.1;Name=WP_010930739.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930739.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1714434 1715630 . + . ID=gene1670;Name=RD04_RS08355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08355;old_locus_tag=RD04_08340 NZ_CP010961.1 Protein Homology CDS 1714434 1715630 . + 0 ID=cds1644;Parent=gene1670;Dbxref=Genbank:WP_014486081.1;Name=WP_014486081.1;gbkey=CDS;product=acetyl-CoA acetyltransferase;protein_id=WP_014486081.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1715703 1717022 . + . ID=gene1671;Name=RD04_RS08360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08360;old_locus_tag=RD04_08345 NZ_CP010961.1 Protein Homology CDS 1715703 1717022 . + 0 ID=cds1645;Parent=gene1671;Dbxref=Genbank:WP_003816680.1;Name=WP_003816680.1;gbkey=CDS;product=acyl--CoA ligase;protein_id=WP_003816680.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1717019 1717894 . + . ID=gene1672;Name=RD04_RS08365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08365;old_locus_tag=RD04_08350 NZ_CP010961.1 Protein Homology CDS 1717019 1717894 . + 0 ID=cds1646;Parent=gene1672;Dbxref=Genbank:WP_010930737.1;Name=WP_010930737.1;gbkey=CDS;product=esterase;protein_id=WP_010930737.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1717925 1719073 . - . ID=gene1673;Name=RD04_RS08370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08370;old_locus_tag=RD04_08355 NZ_CP010961.1 Protein Homology CDS 1717925 1719073 . - 0 ID=cds1647;Parent=gene1673;Dbxref=Genbank:WP_010930736.1;Name=WP_010930736.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010930736.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1719091 1719405 . - . ID=gene1674;Name=RD04_RS08375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08375;old_locus_tag=RD04_08360 NZ_CP010961.1 Protein Homology CDS 1719091 1719405 . - 0 ID=cds1648;Parent=gene1674;Dbxref=Genbank:WP_010930735.1;Name=WP_010930735.1;gbkey=CDS;product=ferredoxin;protein_id=WP_010930735.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1719427 1720149 . - . ID=gene1675;Name=RD04_RS08380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08380;old_locus_tag=RD04_08365 NZ_CP010961.1 Protein Homology CDS 1719427 1720149 . - 0 ID=cds1649;Parent=gene1675;Dbxref=Genbank:WP_003816687.1;Name=WP_003816687.1;gbkey=CDS;product=3-oxoacyl-ACP reductase;protein_id=WP_003816687.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1720149 1720967 . - . ID=gene1676;Name=RD04_RS08385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08385;old_locus_tag=RD04_08370 NZ_CP010961.1 Protein Homology CDS 1720149 1720967 . - 0 ID=cds1650;Parent=gene1676;Dbxref=Genbank:WP_003816690.1;Name=WP_003816690.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_003816690.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1720972 1721499 . - . ID=gene1677;Name=RD04_RS08390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08390;old_locus_tag=RD04_08375 NZ_CP010961.1 Protein Homology CDS 1720972 1721499 . - 0 ID=cds1651;Parent=gene1677;Dbxref=Genbank:WP_003816691.1;Name=WP_003816691.1;gbkey=CDS;product=ring-hydroxylating dioxygenase subunit beta;protein_id=WP_003816691.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1721505 1722761 . - . ID=gene1678;Name=RD04_RS08395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08395;old_locus_tag=RD04_08380 NZ_CP010961.1 Protein Homology CDS 1721505 1722761 . - 0 ID=cds1652;Parent=gene1678;Dbxref=Genbank:WP_010930733.1;Name=WP_010930733.1;gbkey=CDS;product=ring-hydroxylating oxygenase subunit alpha;protein_id=WP_010930733.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1723120 1724259 . + . ID=gene1679;Name=RD04_RS08400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08400;old_locus_tag=RD04_08385 NZ_CP010961.1 Protein Homology CDS 1723120 1724259 . + 0 ID=cds1653;Parent=gene1679;Dbxref=Genbank:WP_010930732.1;Name=WP_010930732.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930732.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1724337 1725209 . + . ID=gene1680;Name=RD04_RS08405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08405;old_locus_tag=RD04_08390 NZ_CP010961.1 Protein Homology CDS 1724337 1725209 . + 0 ID=cds1654;Parent=gene1680;Dbxref=Genbank:WP_010930731.1;Name=WP_010930731.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010930731.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1725213 1725983 . + . ID=gene1681;Name=RD04_RS08410;end_range=1725983,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08410;old_locus_tag=RD04_08395;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 1725213 1725983 . + 0 ID=cds1655;Parent=gene1681;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=1725983,.;gbkey=CDS;partial=true;product=branched-chain amino acid ABC transporter permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1726128 1727030 . + . ID=gene1682;Name=RD04_RS08415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08415;old_locus_tag=RD04_08400 NZ_CP010961.1 GeneMarkS+ CDS 1726128 1727030 . + 0 ID=cds1656;Parent=gene1682;Dbxref=Genbank:WP_054604376.1;Name=WP_054604376.1;gbkey=CDS;product=integrase;protein_id=WP_054604376.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1726990 1727625 . - . ID=gene1683;Name=RD04_RS08420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08420;old_locus_tag=RD04_08405 NZ_CP010961.1 Protein Homology CDS 1726990 1727625 . - 0 ID=cds1657;Parent=gene1683;Dbxref=Genbank:WP_010930729.1;Name=WP_010930729.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930729.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1727985 1729307 . - . ID=gene1684;Name=RD04_RS08425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08425;old_locus_tag=RD04_08410 NZ_CP010961.1 Protein Homology CDS 1727985 1729307 . - 0 ID=cds1658;Parent=gene1684;Dbxref=Genbank:WP_010930728.1;Name=WP_010930728.1;Note=catalyzes the reversible formation of glyoxylate and succinate from isocitrate%3B glyoxylate bypass pathway;gbkey=CDS;product=isocitrate lyase;protein_id=WP_010930728.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1729626 1730447 . + . ID=gene1685;Name=RD04_RS08430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08430;old_locus_tag=RD04_08415 NZ_CP010961.1 Protein Homology CDS 1729626 1730447 . + 0 ID=cds1659;Parent=gene1685;Dbxref=Genbank:WP_010930727.1;Name=WP_010930727.1;gbkey=CDS;product=NADPH-dependent 7-cyano-7-deazaguanine reductase QueF;protein_id=WP_010930727.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1730383 1730724 . - . ID=gene1686;Name=RD04_RS08435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08435;old_locus_tag=RD04_08420 NZ_CP010961.1 Protein Homology CDS 1730383 1730724 . - 0 ID=cds1660;Parent=gene1686;Dbxref=Genbank:WP_019247649.1;Name=WP_019247649.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247649.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1730734 1731702 . - . ID=gene1687;Name=RD04_RS08440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08440;old_locus_tag=RD04_08425 NZ_CP010961.1 Protein Homology CDS 1730734 1731702 . - 0 ID=cds1661;Parent=gene1687;Dbxref=Genbank:WP_019247650.1;Name=WP_019247650.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247650.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1731872 1732444 . - . ID=gene1688;Name=RD04_RS08445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08445;old_locus_tag=RD04_08430 NZ_CP010961.1 Protein Homology CDS 1731872 1732444 . - 0 ID=cds1662;Parent=gene1688;Dbxref=Genbank:WP_003810356.1;Name=WP_003810356.1;gbkey=CDS;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_003810356.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1732484 1734313 . - . ID=gene1689;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=RD04_RS08450;old_locus_tag=RD04_08435 NZ_CP010961.1 Protein Homology CDS 1732484 1734313 . - 0 ID=cds1663;Parent=gene1689;Dbxref=Genbank:WP_010930726.1;Name=WP_010930726.1;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision;gbkey=CDS;gene=uvrC;product=UvrABC system protein C;protein_id=WP_010930726.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1734276 1735334 . - . ID=gene1690;Name=RD04_RS08455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08455;old_locus_tag=RD04_08440 NZ_CP010961.1 Protein Homology CDS 1734276 1735334 . - 0 ID=cds1664;Parent=gene1690;Dbxref=Genbank:WP_010930725.1;Name=WP_010930725.1;gbkey=CDS;product=beta-hexosaminidase;protein_id=WP_010930725.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1735372 1735833 . - . ID=gene1691;Name=RD04_RS08460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08460;old_locus_tag=RD04_08445 NZ_CP010961.1 Protein Homology CDS 1735372 1735833 . - 0 ID=cds1665;Parent=gene1691;Dbxref=Genbank:WP_010930724.1;Name=WP_010930724.1;gbkey=CDS;product=holo-ACP synthase;protein_id=WP_010930724.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1735918 1736664 . - . ID=gene1692;Name=RD04_RS08465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08465;old_locus_tag=RD04_08450 NZ_CP010961.1 Protein Homology CDS 1735918 1736664 . - 0 ID=cds1666;Parent=gene1692;Dbxref=Genbank:WP_003810344.1;Name=WP_003810344.1;Note=involved in the de novo synthesis of pyridoxine (Vitamin B6);gbkey=CDS;product=pyridoxine 5'-phosphate synthase;protein_id=WP_003810344.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1736661 1738158 . - . ID=gene1693;Name=RD04_RS08470;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08470;old_locus_tag=RD04_08455;pseudo=true NZ_CP010961.1 Protein Homology CDS 1736661 1738158 . - 0 ID=cds1667;Parent=gene1693;Note=frameshifted;gbkey=CDS;product=multidrug transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1738155 1741385 . - . ID=gene1694;Name=RD04_RS08475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08475;old_locus_tag=RD04_08460 NZ_CP010961.1 Protein Homology CDS 1738155 1741385 . - 0 ID=cds1668;Parent=gene1694;Dbxref=Genbank:WP_019247651.1;Name=WP_019247651.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_019247651.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1741452 1742768 . - . ID=gene1695;Name=RD04_RS08480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08480;old_locus_tag=RD04_08465 NZ_CP010961.1 Protein Homology CDS 1741452 1742768 . - 0 ID=cds1669;Parent=gene1695;Dbxref=Genbank:WP_019247652.1;Name=WP_019247652.1;gbkey=CDS;product=membrane protein;protein_id=WP_019247652.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1743021 1743395 . - . ID=gene1696;Name=RD04_RS08485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08485;old_locus_tag=RD04_08470 NZ_CP010961.1 Protein Homology CDS 1743021 1743395 . - 0 ID=cds1670;Parent=gene1696;Dbxref=Genbank:WP_010930721.1;Name=WP_010930721.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_010930721.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1743498 1744676 . - . ID=gene1697;Name=RD04_RS08490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08490;old_locus_tag=RD04_08475 NZ_CP010961.1 Protein Homology CDS 1743498 1744676 . - 0 ID=cds1671;Parent=gene1697;Dbxref=Genbank:WP_010930720.1;Name=WP_010930720.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930720.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1744687 1745277 . - . ID=gene1698;Name=RD04_RS08495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08495;old_locus_tag=RD04_08480 NZ_CP010961.1 Protein Homology CDS 1744687 1745277 . - 0 ID=cds1672;Parent=gene1698;Dbxref=Genbank:WP_003810329.1;Name=WP_003810329.1;gbkey=CDS;product=lipoprotein;protein_id=WP_003810329.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1745388 1746194 . + . ID=gene1699;Name=RD04_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08500;old_locus_tag=RD04_08485 NZ_CP010961.1 Protein Homology CDS 1745388 1746194 . + 0 ID=cds1673;Parent=gene1699;Dbxref=Genbank:WP_003818535.1;Name=WP_003818535.1;gbkey=CDS;product=ModE family transcriptional regulator;protein_id=WP_003818535.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1746220 1747014 . - . ID=gene1700;Name=RD04_RS08505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08505;old_locus_tag=RD04_08490 NZ_CP010961.1 Protein Homology CDS 1746220 1747014 . - 0 ID=cds1674;Parent=gene1700;Dbxref=Genbank:WP_010930719.1;Name=WP_010930719.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930719.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1747016 1747905 . - . ID=gene1701;Name=RD04_RS08510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08510;old_locus_tag=RD04_08495;pseudo=true NZ_CP010961.1 Protein Homology CDS 1747016 1747905 . - 0 ID=cds1675;Parent=gene1701;Note=frameshifted;gbkey=CDS;product=ABC transporter permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1748015 1748989 . - . ID=gene1702;Name=RD04_RS08515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08515;old_locus_tag=RD04_08500 NZ_CP010961.1 Protein Homology CDS 1748015 1748989 . - 0 ID=cds1676;Parent=gene1702;Dbxref=Genbank:WP_010930718.1;Name=WP_010930718.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930718.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1749148 1749660 . - . ID=gene1703;Name=RD04_RS08520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08520;old_locus_tag=RD04_08505 NZ_CP010961.1 Protein Homology CDS 1749148 1749660 . - 0 ID=cds1677;Parent=gene1703;Dbxref=Genbank:WP_003818533.1;Name=WP_003818533.1;gbkey=CDS;product=superoxide dismutase;protein_id=WP_003818533.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1749817 1750788 . - . ID=gene1704;Name=RD04_RS08525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08525;old_locus_tag=RD04_08510 NZ_CP010961.1 Protein Homology CDS 1749817 1750788 . - 0 ID=cds1678;Parent=gene1704;Dbxref=Genbank:WP_003818532.1;Name=WP_003818532.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003818532.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1750986 1752527 . - . ID=gene1705;Name=RD04_RS08530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08530;old_locus_tag=RD04_08515;pseudo=true NZ_CP010961.1 Protein Homology CDS 1750986 1752527 . - 0 ID=cds1679;Parent=gene1705;Note=catalyzes the formation of malonyl-CoA from malonate and CoA%3B internal stop;gbkey=CDS;product=malonyl-CoA synthase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1752533 1753339 . - . ID=gene1706;Name=RD04_RS08535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08535;old_locus_tag=RD04_08520 NZ_CP010961.1 Protein Homology CDS 1752533 1753339 . - 0 ID=cds1680;Parent=gene1706;Dbxref=Genbank:WP_010930717.1;Name=WP_010930717.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010930717.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1753336 1754637 . - . ID=gene1707;Name=RD04_RS08540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08540;old_locus_tag=RD04_08525 NZ_CP010961.1 Protein Homology CDS 1753336 1754637 . - 0 ID=cds1681;Parent=gene1707;Dbxref=Genbank:WP_010930716.1;Name=WP_010930716.1;gbkey=CDS;product=malonyl-CoA decarboxylase;protein_id=WP_010930716.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1754588 1755352 . - . ID=gene1708;Name=RD04_RS08545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08545;old_locus_tag=RD04_08530 NZ_CP010961.1 Protein Homology CDS 1754588 1755352 . - 0 ID=cds1682;Parent=gene1708;Dbxref=Genbank:WP_010930715.1;Name=WP_010930715.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010930715.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1755466 1756236 . - . ID=gene1709;Name=RD04_RS08550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08550;old_locus_tag=RD04_08535 NZ_CP010961.1 Protein Homology CDS 1755466 1756236 . - 0 ID=cds1683;Parent=gene1709;Dbxref=Genbank:WP_010930714.1;Name=WP_010930714.1;gbkey=CDS;product=spermidine synthase;protein_id=WP_010930714.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1756321 1757508 . - . ID=gene1710;Name=RD04_RS08555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08555;old_locus_tag=RD04_08540 NZ_CP010961.1 Protein Homology CDS 1756321 1757508 . - 0 ID=cds1684;Parent=gene1710;Dbxref=Genbank:WP_010930713.1;Name=WP_010930713.1;gbkey=CDS;product=3-ketoacyl-CoA thiolase;protein_id=WP_010930713.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1757581 1757955 . - . ID=gene1711;Name=RD04_RS08560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08560;old_locus_tag=RD04_08545 NZ_CP010961.1 Protein Homology CDS 1757581 1757955 . - 0 ID=cds1685;Parent=gene1711;Dbxref=Genbank:WP_003818524.1;Name=WP_003818524.1;gbkey=CDS;product=4-oxalocrotonate tautomerase;protein_id=WP_003818524.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1758056 1759318 . - . ID=gene1712;Name=RD04_RS08565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08565;old_locus_tag=RD04_08550 NZ_CP010961.1 Protein Homology CDS 1758056 1759318 . - 0 ID=cds1686;Parent=gene1712;Dbxref=Genbank:WP_003810308.1;Name=WP_003810308.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003810308.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1759315 1760172 . - . ID=gene1713;Name=RD04_RS08570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08570;old_locus_tag=RD04_08555 NZ_CP010961.1 Protein Homology CDS 1759315 1760172 . - 0 ID=cds1687;Parent=gene1713;Dbxref=Genbank:WP_003810306.1;Name=WP_003810306.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003810306.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1760345 1761346 . - . ID=gene1714;Name=RD04_RS08575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08575;old_locus_tag=RD04_08560 NZ_CP010961.1 Protein Homology CDS 1760345 1761346 . - 0 ID=cds1688;Parent=gene1714;Dbxref=Genbank:WP_003818523.1;Name=WP_003818523.1;gbkey=CDS;product=glycine/betaine ABC transporter substrate-binding protein;protein_id=WP_003818523.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1761798 1762700 . - . ID=gene1715;Name=RD04_RS08580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08580;old_locus_tag=RD04_08565 NZ_CP010961.1 GeneMarkS+ CDS 1761798 1762700 . - 0 ID=cds1689;Parent=gene1715;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1762847 1764095 . - . ID=gene1716;Name=RD04_RS08585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08585;old_locus_tag=RD04_08570;pseudo=true NZ_CP010961.1 Protein Homology CDS 1762847 1764095 . - 0 ID=cds1690;Parent=gene1716;Note=frameshifted;gbkey=CDS;product=cyclopropane-fatty-acyl-phospholipid synthase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1764312 1765463 . + . ID=gene1717;Name=RD04_RS08590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08590;old_locus_tag=RD04_08575 NZ_CP010961.1 Protein Homology CDS 1764312 1765463 . + 0 ID=cds1691;Parent=gene1717;Dbxref=Genbank:WP_033446265.1;Name=WP_033446265.1;gbkey=CDS;product=Bcr/CflA family drug resistance efflux transporter;protein_id=WP_033446265.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1765832 1766068 . + . ID=gene1718;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=RD04_RS08595;old_locus_tag=RD04_08580 NZ_CP010961.1 Protein Homology CDS 1765832 1766068 . + 0 ID=cds1692;Parent=gene1718;Dbxref=Genbank:WP_003810297.1;Name=WP_003810297.1;Note=required for 70S ribosome assembly;gbkey=CDS;gene=rpmB;product=50S ribosomal protein L28;protein_id=WP_003810297.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1766132 1766299 . + . ID=gene1719;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=RD04_RS08600;old_locus_tag=RD04_08585 NZ_CP010961.1 Protein Homology CDS 1766132 1766299 . + 0 ID=cds1693;Parent=gene1719;Dbxref=Genbank:WP_010930711.1;Name=WP_010930711.1;Note=in Escherichia coli BM108%2C a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function%3B there are paralogous genes in several bacterial genomes%2C and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31%3B the proteins in this group lack the CXXC motif;gbkey=CDS;gene=rpmG;product=50S ribosomal protein L33;protein_id=WP_010930711.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1766413 1768218 . - . ID=gene1720;Name=RD04_RS08605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08605;old_locus_tag=RD04_08590 NZ_CP010961.1 Protein Homology CDS 1766413 1768218 . - 0 ID=cds1694;Parent=gene1720;Dbxref=Genbank:WP_010930710.1;Name=WP_010930710.1;gbkey=CDS;product=sulfate transporter;protein_id=WP_010930710.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1768472 1769374 . - . ID=gene1721;Name=RD04_RS08610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08610;old_locus_tag=RD04_08595 NZ_CP010961.1 GeneMarkS+ CDS 1768472 1769374 . - 0 ID=cds1695;Parent=gene1721;Dbxref=Genbank:WP_039250367.1;Name=WP_039250367.1;gbkey=CDS;product=integrase;protein_id=WP_039250367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1769699 1770136 . + . ID=gene1722;Name=RD04_RS08615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08615;old_locus_tag=RD04_08600 NZ_CP010961.1 Protein Homology CDS 1769699 1770136 . + 0 ID=cds1696;Parent=gene1722;Dbxref=Genbank:WP_019247822.1;Name=WP_019247822.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_019247822.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1770259 1770771 . + . ID=gene1723;Name=RD04_RS08620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08620;old_locus_tag=RD04_08605 NZ_CP010961.1 Protein Homology CDS 1770259 1770771 . + 0 ID=cds1697;Parent=gene1723;Dbxref=Genbank:WP_003810260.1;Name=WP_003810260.1;gbkey=CDS;product=MarR family transcriptional regulator;protein_id=WP_003810260.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1770813 1771970 . + . ID=gene1724;Name=RD04_RS08625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08625;old_locus_tag=RD04_08610 NZ_CP010961.1 Protein Homology CDS 1770813 1771970 . + 0 ID=cds1698;Parent=gene1724;Dbxref=Genbank:WP_010928175.1;Name=WP_010928175.1;gbkey=CDS;product=transporter;protein_id=WP_010928175.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1772048 1774705 . + . ID=gene1725;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=RD04_RS08630;old_locus_tag=RD04_08615 NZ_CP010961.1 Protein Homology CDS 1772048 1774705 . + 0 ID=cds1699;Parent=gene1725;Dbxref=Genbank:WP_003818515.1;Name=WP_003818515.1;Note=leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase;gbkey=CDS;gene=leuS;product=leucine--tRNA ligase;protein_id=WP_003818515.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1774721 1775380 . + . ID=gene1726;Name=RD04_RS08635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08635;old_locus_tag=RD04_08620 NZ_CP010961.1 Protein Homology CDS 1774721 1775380 . + 0 ID=cds1700;Parent=gene1726;Dbxref=Genbank:WP_003810254.1;Name=WP_003810254.1;gbkey=CDS;product=lipoprotein;protein_id=WP_003810254.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1775383 1776438 . + . ID=gene1727;Name=RD04_RS08640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08640;old_locus_tag=RD04_08625 NZ_CP010961.1 Protein Homology CDS 1775383 1776438 . + 0 ID=cds1701;Parent=gene1727;Dbxref=Genbank:WP_003818514.1;Name=WP_003818514.1;gbkey=CDS;product=DNA polymerase III subunit delta;protein_id=WP_003818514.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1776560 1777819 . + . ID=gene1728;Name=RD04_RS08645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08645;old_locus_tag=RD04_08630 NZ_CP010961.1 Protein Homology CDS 1776560 1777819 . + 0 ID=cds1702;Parent=gene1728;Dbxref=Genbank:WP_010930708.1;Name=WP_010930708.1;gbkey=CDS;product=gamma-glutamyl-phosphate reductase;protein_id=WP_010930708.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1777816 1778211 . + . ID=gene1729;Name=RD04_RS08650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08650;old_locus_tag=RD04_08635 NZ_CP010961.1 Protein Homology CDS 1777816 1778211 . + 0 ID=cds1703;Parent=gene1729;Dbxref=Genbank:WP_003810249.1;Name=WP_003810249.1;gbkey=CDS;product=membrane protein;protein_id=WP_003810249.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1778234 1779628 . - . ID=gene1730;Name=RD04_RS08655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08655;old_locus_tag=RD04_08640 NZ_CP010961.1 Protein Homology CDS 1778234 1779628 . - 0 ID=cds1704;Parent=gene1730;Dbxref=Genbank:WP_010930707.1;Name=WP_010930707.1;Note=catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia;gbkey=CDS;product=amidase;protein_id=WP_010930707.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1779810 1780757 . + . ID=gene1731;Name=RD04_RS08660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08660;old_locus_tag=RD04_08645 NZ_CP010961.1 Protein Homology CDS 1779810 1780757 . + 0 ID=cds1705;Parent=gene1731;Dbxref=Genbank:WP_010930706.1;Name=WP_010930706.1;gbkey=CDS;product=3-hydroxybutyryl-CoA dehydrogenase;protein_id=WP_010930706.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1780754 1781026 . + . ID=gene1732;Name=RD04_RS08665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08665;old_locus_tag=RD04_08650 NZ_CP010961.1 Protein Homology CDS 1780754 1781026 . + 0 ID=cds1706;Parent=gene1732;Dbxref=Genbank:WP_003810239.1;Name=WP_003810239.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_003810239.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1781091 1781534 . + . ID=gene1733;Name=RD04_RS08670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08670;old_locus_tag=RD04_08655 NZ_CP010961.1 Protein Homology CDS 1781091 1781534 . + 0 ID=cds1707;Parent=gene1733;Dbxref=Genbank:WP_047122782.1;Name=WP_047122782.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_047122782.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1781904 1782016 . - . ID=gene1734;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=RD04_RS08675;old_locus_tag=RD04_08660 NZ_CP010961.1 cmsearch rRNA 1781904 1782016 . - . ID=rna26;Parent=gene1734;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;product=5S ribosomal RNA NZ_CP010961.1 cmsearch exon 1781904 1782016 . - . ID=id31;Parent=rna26;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;product=5S ribosomal RNA NZ_CP010961.1 RefSeq gene 1782180 1785080 . - . ID=gene1735;Name=RD04_RS08680;gbkey=Gene;gene_biotype=rRNA;locus_tag=RD04_RS08680;old_locus_tag=RD04_08665 NZ_CP010961.1 RefSeq rRNA 1782180 1785080 . - . ID=rna27;Parent=gene1735;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010961.1 RefSeq exon 1782180 1785080 . - . ID=id32;Parent=rna27;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010961.1 RefSeq gene 1785388 1785463 . - . ID=gene1736;Name=RD04_RS08685;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS08685;old_locus_tag=RD04_08670 NZ_CP010961.1 tRNAscan-SE tRNA 1785388 1785463 . - . ID=rna28;Parent=gene1736;anticodon=(pos:complement(1785428..1785430));gbkey=tRNA;product=tRNA-Ala NZ_CP010961.1 tRNAscan-SE exon 1785388 1785463 . - . ID=id33;Parent=rna28;anticodon=(pos:complement(1785428..1785430));gbkey=tRNA;product=tRNA-Ala NZ_CP010961.1 RefSeq gene 1785484 1785560 . - . ID=gene1737;Name=RD04_RS08690;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS08690;old_locus_tag=RD04_08675 NZ_CP010961.1 tRNAscan-SE tRNA 1785484 1785560 . - . ID=rna29;Parent=gene1737;anticodon=(pos:complement(1785524..1785526));gbkey=tRNA;product=tRNA-Ile NZ_CP010961.1 tRNAscan-SE exon 1785484 1785560 . - . ID=id34;Parent=rna29;anticodon=(pos:complement(1785524..1785526));gbkey=tRNA;product=tRNA-Ile NZ_CP010961.1 RefSeq gene 1785654 1787195 . - . ID=gene1738;Name=RD04_RS08695;gbkey=Gene;gene_biotype=rRNA;locus_tag=RD04_RS08695;old_locus_tag=RD04_08680 NZ_CP010961.1 RefSeq rRNA 1785654 1787195 . - . ID=rna30;Parent=gene1738;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010961.1 RefSeq exon 1785654 1787195 . - . ID=id35;Parent=rna30;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010961.1 RefSeq gene 1788092 1788340 . - . ID=gene1739;Name=RD04_RS08700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08700;old_locus_tag=RD04_08685 NZ_CP010961.1 Protein Homology CDS 1788092 1788340 . - 0 ID=cds1708;Parent=gene1739;Dbxref=Genbank:WP_019248843.1;Name=WP_019248843.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248843.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1788429 1789391 . + . ID=gene1740;Name=RD04_RS08705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08705;old_locus_tag=RD04_08690 NZ_CP010961.1 Protein Homology CDS 1788429 1789391 . + 0 ID=cds1709;Parent=gene1740;Dbxref=Genbank:WP_010930705.1;Name=WP_010930705.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930705.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1789597 1790573 . + . ID=gene1741;Name=RD04_RS08710;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08710;old_locus_tag=RD04_08695;pseudo=true NZ_CP010961.1 Protein Homology CDS 1789597 1790573 . + 0 ID=cds1710;Parent=gene1741;Note=frameshifted;gbkey=CDS;product=sodium transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1790623 1792140 . - . ID=gene1742;Name=RD04_RS08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08715;old_locus_tag=RD04_08700 NZ_CP010961.1 Protein Homology CDS 1790623 1792140 . - 0 ID=cds1711;Parent=gene1742;Dbxref=Genbank:WP_023853568.1;Name=WP_023853568.1;gbkey=CDS;product=succinate CoA transferase;protein_id=WP_023853568.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1792366 1793277 . + . ID=gene1743;Name=RD04_RS08720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08720;old_locus_tag=RD04_08705 NZ_CP010961.1 Protein Homology CDS 1792366 1793277 . + 0 ID=cds1712;Parent=gene1743;Dbxref=Genbank:WP_010926318.1;Name=WP_010926318.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010926318.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1793687 1794589 . + . ID=gene1744;Name=RD04_RS08725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08725;old_locus_tag=RD04_08710 NZ_CP010961.1 GeneMarkS+ CDS 1793687 1794589 . + 0 ID=cds1713;Parent=gene1744;Dbxref=Genbank:WP_039250369.1;Name=WP_039250369.1;gbkey=CDS;product=integrase;protein_id=WP_039250369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1794657 1795106 . - . ID=gene1745;Name=RD04_RS08730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08730;old_locus_tag=RD04_08715 NZ_CP010961.1 Protein Homology CDS 1794657 1795106 . - 0 ID=cds1714;Parent=gene1745;Dbxref=Genbank:WP_019248436.1;Name=WP_019248436.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248436.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1795492 1796262 . - . ID=gene1746;Name=RD04_RS08735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08735;old_locus_tag=RD04_08720 NZ_CP010961.1 Protein Homology CDS 1795492 1796262 . - 0 ID=cds1715;Parent=gene1746;Dbxref=Genbank:WP_010930703.1;Name=WP_010930703.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1796266 1797168 . - . ID=gene1747;Name=RD04_RS08740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08740;old_locus_tag=RD04_08725 NZ_CP010961.1 Protein Homology CDS 1796266 1797168 . - 0 ID=cds1716;Parent=gene1747;Dbxref=Genbank:WP_010930702.1;Name=WP_010930702.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930702.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1797237 1797536 . - . ID=gene1748;Name=RD04_RS08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08745;old_locus_tag=RD04_08730 NZ_CP010961.1 Protein Homology CDS 1797237 1797536 . - 0 ID=cds1717;Parent=gene1748;Dbxref=Genbank:WP_010930701.1;Name=WP_010930701.1;Note=unknown function%3B YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase%2C but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930701.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1797672 1797962 . + . ID=gene1749;Name=RD04_RS08750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08750;old_locus_tag=RD04_08735 NZ_CP010961.1 Protein Homology CDS 1797672 1797962 . + 0 ID=cds1718;Parent=gene1749;Dbxref=Genbank:WP_003810207.1;Name=WP_003810207.1;gbkey=CDS;product=antibiotic biosynthesis monooxygenase;protein_id=WP_003810207.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1797969 1798355 . - . ID=gene1750;Name=RD04_RS08755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08755;old_locus_tag=RD04_08740 NZ_CP010961.1 Protein Homology CDS 1797969 1798355 . - 0 ID=cds1719;Parent=gene1750;Dbxref=Genbank:WP_003810206.1;Name=WP_003810206.1;gbkey=CDS;product=nucleotide pyrophosphohydrolase;protein_id=WP_003810206.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1798368 1798895 . - . ID=gene1751;Name=RD04_RS08760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08760;old_locus_tag=RD04_08745 NZ_CP010961.1 Protein Homology CDS 1798368 1798895 . - 0 ID=cds1720;Parent=gene1751;Dbxref=Genbank:WP_033446353.1;Name=WP_033446353.1;gbkey=CDS;product=DNA polymerase III subunit epsilon;protein_id=WP_033446353.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1799178 1801769 . + . ID=gene1752;Name=RD04_RS08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08765;old_locus_tag=RD04_08750 NZ_CP010961.1 Protein Homology CDS 1799178 1801769 . + 0 ID=cds1721;Parent=gene1752;Dbxref=Genbank:WP_010930699.1;Name=WP_010930699.1;Note=catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate;gbkey=CDS;product=aconitate hydratase B;protein_id=WP_010930699.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1802165 1802503 . + . ID=gene1753;Name=RD04_RS08770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08770;old_locus_tag=RD04_08755 NZ_CP010961.1 Protein Homology CDS 1802165 1802503 . + 0 ID=cds1722;Parent=gene1753;Dbxref=Genbank:WP_010930698.1;Name=WP_010930698.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930698.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1802506 1803054 . + . ID=gene1754;Name=RD04_RS08775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08775;old_locus_tag=RD04_08760 NZ_CP010961.1 Protein Homology CDS 1802506 1803054 . + 0 ID=cds1723;Parent=gene1754;Dbxref=Genbank:WP_010930697.1;Name=WP_010930697.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010930697.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1803136 1804086 . + . ID=gene1755;Name=RD04_RS08780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08780;old_locus_tag=RD04_08765 NZ_CP010961.1 Protein Homology CDS 1803136 1804086 . + 0 ID=cds1724;Parent=gene1755;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1804163 1804897 . - . ID=gene1756;Name=RD04_RS08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08785;old_locus_tag=RD04_08770 NZ_CP010961.1 Protein Homology CDS 1804163 1804897 . - 0 ID=cds1725;Parent=gene1756;Dbxref=Genbank:WP_010930696.1;Name=WP_010930696.1;gbkey=CDS;product=haloacid dehalogenase;protein_id=WP_010930696.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1805060 1807264 . - . ID=gene1757;Name=RD04_RS08790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08790;old_locus_tag=RD04_08775 NZ_CP010961.1 Protein Homology CDS 1805060 1807264 . - 0 ID=cds1726;Parent=gene1757;Dbxref=Genbank:WP_010930695.1;Name=WP_010930695.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_010930695.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1807541 1808143 . + . ID=gene1758;Name=RD04_RS08795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08795;old_locus_tag=RD04_08780 NZ_CP010961.1 Protein Homology CDS 1807541 1808143 . + 0 ID=cds1727;Parent=gene1758;Dbxref=Genbank:WP_010930694.1;Name=WP_010930694.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010930694.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1808381 1811086 . + . ID=gene1759;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=RD04_RS08800;old_locus_tag=RD04_08785 NZ_CP010961.1 Protein Homology CDS 1808381 1811086 . + 0 ID=cds1728;Parent=gene1759;Dbxref=Genbank:WP_003820240.1;Name=WP_003820240.1;Note=catalyzes the conversion of citrate to isocitrate;gbkey=CDS;gene=acnA;product=aconitate hydratase;protein_id=WP_003820240.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1811195 1811932 . - . ID=gene1760;Name=RD04_RS08805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08805;old_locus_tag=RD04_08790 NZ_CP010961.1 Protein Homology CDS 1811195 1811932 . - 0 ID=cds1729;Parent=gene1760;Dbxref=Genbank:WP_033446348.1;Name=WP_033446348.1;gbkey=CDS;product=dioxygenase;protein_id=WP_033446348.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1812141 1813343 . + . ID=gene1761;Name=RD04_RS08810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08810;old_locus_tag=RD04_08795 NZ_CP010961.1 Protein Homology CDS 1812141 1813343 . + 0 ID=cds1730;Parent=gene1761;Dbxref=Genbank:WP_010930692.1;Name=WP_010930692.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930692.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1813359 1814471 . + . ID=gene1762;Name=RD04_RS08815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08815;old_locus_tag=RD04_08800 NZ_CP010961.1 Protein Homology CDS 1813359 1814471 . + 0 ID=cds1731;Parent=gene1762;Dbxref=Genbank:WP_010930691.1;Name=WP_010930691.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930691.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1814614 1815171 . + . ID=gene1763;Name=RD04_RS08820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08820;old_locus_tag=RD04_08805 NZ_CP010961.1 Protein Homology CDS 1814614 1815171 . + 0 ID=cds1732;Parent=gene1763;Dbxref=Genbank:WP_003810194.1;Name=WP_003810194.1;gbkey=CDS;product=elongation factor P;protein_id=WP_003810194.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1815291 1815701 . - . ID=gene1764;Name=RD04_RS08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08825;old_locus_tag=RD04_08810 NZ_CP010961.1 Protein Homology CDS 1815291 1815701 . - 0 ID=cds1733;Parent=gene1764;Dbxref=Genbank:WP_010930690.1;Name=WP_010930690.1;gbkey=CDS;product=cytochrome c;protein_id=WP_010930690.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1815698 1816267 . - . ID=gene1765;Name=RD04_RS08830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08830;old_locus_tag=RD04_08815 NZ_CP010961.1 Protein Homology CDS 1815698 1816267 . - 0 ID=cds1734;Parent=gene1765;Dbxref=Genbank:WP_010930689.1;Name=WP_010930689.1;gbkey=CDS;product=ferritin;protein_id=WP_010930689.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1816414 1817118 . - . ID=gene1766;Name=RD04_RS08835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08835;old_locus_tag=RD04_08820 NZ_CP010961.1 Protein Homology CDS 1816414 1817118 . - 0 ID=cds1735;Parent=gene1766;Dbxref=Genbank:WP_010930688.1;Name=WP_010930688.1;gbkey=CDS;product=RNA polymerase sigma factor;protein_id=WP_010930688.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1817176 1817643 . - . ID=gene1767;Name=RD04_RS08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08840;old_locus_tag=RD04_08825 NZ_CP010961.1 Protein Homology CDS 1817176 1817643 . - 0 ID=cds1736;Parent=gene1767;Dbxref=Genbank:WP_010930687.1;Name=WP_010930687.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930687.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1817743 1818438 . - . ID=gene1768;Name=RD04_RS08845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08845;old_locus_tag=RD04_08830 NZ_CP010961.1 Protein Homology CDS 1817743 1818438 . - 0 ID=cds1737;Parent=gene1768;Dbxref=Genbank:WP_003810189.1;Name=WP_003810189.1;gbkey=CDS;product=lipoprotein;protein_id=WP_003810189.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1818518 1819909 . - . ID=gene1769;Name=RD04_RS08850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08850;old_locus_tag=RD04_08835 NZ_CP010961.1 Protein Homology CDS 1818518 1819909 . - 0 ID=cds1738;Parent=gene1769;Dbxref=Genbank:WP_003820229.1;Name=WP_003820229.1;gbkey=CDS;product=sigma-54-dependent Fis family transcriptional regulator;protein_id=WP_003820229.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1819931 1822174 . - . ID=gene1770;Name=RD04_RS08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08855;old_locus_tag=RD04_08840 NZ_CP010961.1 Protein Homology CDS 1819931 1822174 . - 0 ID=cds1739;Parent=gene1770;Dbxref=Genbank:WP_010930686.1;Name=WP_010930686.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930686.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1822188 1822579 . - . ID=gene1771;Name=RD04_RS08860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08860;pseudo=true NZ_CP010961.1 Protein Homology CDS 1822188 1822579 . - 0 ID=cds1740;Parent=gene1771;Note=frameshifted;gbkey=CDS;product=TapA domain-containing protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1822598 1823440 . - . ID=gene1772;Name=RD04_RS08865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08865;old_locus_tag=RD04_08850 NZ_CP010961.1 Protein Homology CDS 1822598 1823440 . - 0 ID=cds1741;Parent=gene1772;Dbxref=Genbank:WP_010930685.1;Name=WP_010930685.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010930685.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1823440 1824426 . - . ID=gene1773;Name=RD04_RS08870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08870;old_locus_tag=RD04_08855 NZ_CP010961.1 Protein Homology CDS 1823440 1824426 . - 0 ID=cds1742;Parent=gene1773;Dbxref=Genbank:WP_014486078.1;Name=WP_014486078.1;gbkey=CDS;product=type II secretion protein F;protein_id=WP_014486078.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1824435 1825355 . - . ID=gene1774;Name=RD04_RS08875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08875;old_locus_tag=RD04_08860 NZ_CP010961.1 Protein Homology CDS 1824435 1825355 . - 0 ID=cds1743;Parent=gene1774;Dbxref=Genbank:WP_010930684.1;Name=WP_010930684.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930684.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1825352 1826705 . - . ID=gene1775;Name=RD04_RS08880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08880;old_locus_tag=RD04_08865;pseudo=true NZ_CP010961.1 Protein Homology CDS 1825352 1826705 . - 0 ID=cds1744;Parent=gene1775;Note=frameshifted;gbkey=CDS;product=pilus assembly protein CpaF;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1826714 1828063 . - . ID=gene1776;Name=RD04_RS08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08885;old_locus_tag=RD04_08870 NZ_CP010961.1 Protein Homology CDS 1826714 1828063 . - 0 ID=cds1745;Parent=gene1776;Dbxref=Genbank:WP_010930683.1;Name=WP_010930683.1;gbkey=CDS;product=pilus assembly protein CpaE;protein_id=WP_010930683.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1828060 1829367 . - . ID=gene1777;Name=RD04_RS08890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08890;old_locus_tag=RD04_08875 NZ_CP010961.1 Protein Homology CDS 1828060 1829367 . - 0 ID=cds1746;Parent=gene1777;Dbxref=Genbank:WP_023853558.1;Name=WP_023853558.1;gbkey=CDS;product=type II and III secretion system protein;protein_id=WP_023853558.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1829465 1830406 . - . ID=gene1778;Name=RD04_RS08895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08895;old_locus_tag=RD04_08880 NZ_CP010961.1 Protein Homology CDS 1829465 1830406 . - 0 ID=cds1747;Parent=gene1778;Dbxref=Genbank:WP_010930681.1;Name=WP_010930681.1;gbkey=CDS;product=Flp pilus assembly protein CpaB;protein_id=WP_010930681.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1830403 1830879 . - . ID=gene1779;Name=RD04_RS08900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08900;old_locus_tag=RD04_08885 NZ_CP010961.1 Protein Homology CDS 1830403 1830879 . - 0 ID=cds1748;Parent=gene1779;Dbxref=Genbank:WP_010930680.1;Name=WP_010930680.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930680.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1830881 1831315 . - . ID=gene1780;Name=RD04_RS08905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08905;old_locus_tag=RD04_08890 NZ_CP010961.1 Protein Homology CDS 1830881 1831315 . - 0 ID=cds1749;Parent=gene1780;Dbxref=Genbank:WP_033446351.1;Name=WP_033446351.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446351.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1831285 1831809 . - . ID=gene1781;Name=RD04_RS08910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08910;old_locus_tag=RD04_08895 NZ_CP010961.1 Protein Homology CDS 1831285 1831809 . - 0 ID=cds1750;Parent=gene1781;Dbxref=Genbank:WP_003820213.1;Name=WP_003820213.1;gbkey=CDS;product=membrane protein;protein_id=WP_003820213.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1831879 1832055 . - . ID=gene1782;Name=RD04_RS08915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08915;old_locus_tag=RD04_08900 NZ_CP010961.1 Protein Homology CDS 1831879 1832055 . - 0 ID=cds1751;Parent=gene1782;Dbxref=Genbank:WP_003820212.1;Name=WP_003820212.1;gbkey=CDS;product=membrane protein;protein_id=WP_003820212.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1832153 1832971 . - . ID=gene1783;Name=RD04_RS08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08920;old_locus_tag=RD04_08905 NZ_CP010961.1 Protein Homology CDS 1832153 1832971 . - 0 ID=cds1752;Parent=gene1783;Dbxref=Genbank:WP_010930678.1;Name=WP_010930678.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930678.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1833428 1835140 . + . ID=gene1784;Name=RD04_RS08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08925;old_locus_tag=RD04_08910 NZ_CP010961.1 Protein Homology CDS 1833428 1835140 . + 0 ID=cds1753;Parent=gene1784;Dbxref=Genbank:WP_010930677.1;Name=WP_010930677.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930677.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1835445 1836939 . + . ID=gene1785;Name=RD04_RS08930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08930;old_locus_tag=RD04_08915;pseudo=true NZ_CP010961.1 Protein Homology CDS 1835445 1836939 . + 0 ID=cds1754;Parent=gene1785;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1837030 1837932 . - . ID=gene1786;Name=RD04_RS08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08935;old_locus_tag=RD04_08920 NZ_CP010961.1 GeneMarkS+ CDS 1837030 1837932 . - 0 ID=cds1755;Parent=gene1786;Dbxref=Genbank:WP_039250367.1;Name=WP_039250367.1;gbkey=CDS;product=integrase;protein_id=WP_039250367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1838055 1838573 . + . ID=gene1787;Name=RD04_RS08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08940;old_locus_tag=RD04_08925 NZ_CP010961.1 Protein Homology CDS 1838055 1838573 . + 0 ID=cds1756;Parent=gene1787;Dbxref=Genbank:WP_033446363.1;Name=WP_033446363.1;gbkey=CDS;product=MarR family transcriptional regulator;protein_id=WP_033446363.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1838622 1840298 . - . ID=gene1788;Name=RD04_RS08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08945;old_locus_tag=RD04_08930 NZ_CP010961.1 Protein Homology CDS 1838622 1840298 . - 0 ID=cds1757;Parent=gene1788;Dbxref=Genbank:WP_004568003.1;Name=WP_004568003.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_004568003.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1840295 1841746 . - . ID=gene1789;Name=RD04_RS08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08950;old_locus_tag=RD04_08935 NZ_CP010961.1 Protein Homology CDS 1840295 1841746 . - 0 ID=cds1758;Parent=gene1789;Dbxref=Genbank:WP_010930676.1;Name=WP_010930676.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_010930676.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1841752 1842729 . - . ID=gene1790;Name=RD04_RS08955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08955;old_locus_tag=RD04_08940 NZ_CP010961.1 Protein Homology CDS 1841752 1842729 . - 0 ID=cds1759;Parent=gene1790;Dbxref=Genbank:WP_010930675.1;Name=WP_010930675.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_010930675.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1842726 1844975 . - . ID=gene1791;Name=RD04_RS08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08960;old_locus_tag=RD04_08945 NZ_CP010961.1 Protein Homology CDS 1842726 1844975 . - 0 ID=cds1760;Parent=gene1791;Dbxref=Genbank:WP_010930674.1;Name=WP_010930674.1;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_010930674.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1845072 1845710 . - . ID=gene1792;Name=RD04_RS08965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08965;old_locus_tag=RD04_08950 NZ_CP010961.1 Protein Homology CDS 1845072 1845710 . - 0 ID=cds1761;Parent=gene1792;Dbxref=Genbank:WP_010930673.1;Name=WP_010930673.1;gbkey=CDS;product=nuclease;protein_id=WP_010930673.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1845773 1846462 . - . ID=gene1793;Name=RD04_RS08970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08970;old_locus_tag=RD04_08955 NZ_CP010961.1 Protein Homology CDS 1845773 1846462 . - 0 ID=cds1762;Parent=gene1793;Dbxref=Genbank:WP_019247640.1;Name=WP_019247640.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247640.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1846632 1848725 . - . ID=gene1794;Name=RD04_RS08975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08975;old_locus_tag=RD04_08960 NZ_CP010961.1 Protein Homology CDS 1846632 1848725 . - 0 ID=cds1763;Parent=gene1794;Dbxref=Genbank:WP_010930672.1;Name=WP_010930672.1;gbkey=CDS;product=ATP-dependent DNA helicase;protein_id=WP_010930672.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1848805 1849704 . + . ID=gene1795;Name=RD04_RS08980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08980;old_locus_tag=RD04_08965 NZ_CP010961.1 Protein Homology CDS 1848805 1849704 . + 0 ID=cds1764;Parent=gene1795;Dbxref=Genbank:WP_010930671.1;Name=WP_010930671.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930671.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1849705 1851142 . - . ID=gene1796;Name=RD04_RS08985;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS08985;old_locus_tag=RD04_08970;pseudo=true NZ_CP010961.1 Protein Homology CDS 1849705 1851142 . - 0 ID=cds1765;Parent=gene1796;Note=frameshifted;gbkey=CDS;product=DNA-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1851339 1852604 . + . ID=gene1797;Name=RD04_RS08990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS08990;old_locus_tag=RD04_08975 NZ_CP010961.1 Protein Homology CDS 1851339 1852604 . + 0 ID=cds1766;Parent=gene1797;Dbxref=Genbank:WP_010930670.1;Name=WP_010930670.1;Note=catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate;gbkey=CDS;product=4-aminobutyrate transaminase;protein_id=WP_010930670.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1852684 1854153 . + . ID=gene1798;Name=gabD;gbkey=Gene;gene=gabD;gene_biotype=protein_coding;locus_tag=RD04_RS08995;old_locus_tag=RD04_08980 NZ_CP010961.1 Protein Homology CDS 1852684 1854153 . + 0 ID=cds1767;Parent=gene1798;Dbxref=Genbank:WP_010930669.1;Name=WP_010930669.1;Note=catalyzes the formation of succinate from succinate semialdehyde%3B NADP dependent;gbkey=CDS;gene=gabD;product=NAD-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_010930669.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1854331 1855182 . + . ID=gene1799;Name=RD04_RS09000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09000;old_locus_tag=RD04_08985 NZ_CP010961.1 Protein Homology CDS 1854331 1855182 . + 0 ID=cds1768;Parent=gene1799;Dbxref=Genbank:WP_010930668.1;Name=WP_010930668.1;gbkey=CDS;product=inositol monophosphatase;protein_id=WP_010930668.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1855251 1856075 . - . ID=gene1800;Name=RD04_RS09005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09005;old_locus_tag=RD04_08990 NZ_CP010961.1 Protein Homology CDS 1855251 1856075 . - 0 ID=cds1769;Parent=gene1800;Dbxref=Genbank:WP_010930667.1;Name=WP_010930667.1;Note=Modulates the activities of several enzymes which are inactive in their acetylated form;gbkey=CDS;product=NAD-dependent protein deacetylase;protein_id=WP_010930667.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1856088 1857314 . - . ID=gene1801;Name=RD04_RS09010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09010;old_locus_tag=RD04_08995 NZ_CP010961.1 Protein Homology CDS 1856088 1857314 . - 0 ID=cds1770;Parent=gene1801;Dbxref=Genbank:WP_010930666.1;Name=WP_010930666.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930666.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1857376 1858329 . - . ID=gene1802;Name=RD04_RS09015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09015;old_locus_tag=RD04_09000 NZ_CP010961.1 Protein Homology CDS 1857376 1858329 . - 0 ID=cds1771;Parent=gene1802;Dbxref=Genbank:WP_010930665.1;Name=WP_010930665.1;gbkey=CDS;product=serine O-acetyltransferase;protein_id=WP_010930665.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1858512 1860083 . - . ID=gene1803;Name=RD04_RS09020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09020;old_locus_tag=RD04_09005 NZ_CP010961.1 Protein Homology CDS 1858512 1860083 . - 0 ID=cds1772;Parent=gene1803;Dbxref=Genbank:WP_010930664.1;Name=WP_010930664.1;gbkey=CDS;product=glucose-6-phosphate isomerase;protein_id=WP_010930664.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1860093 1861505 . - . ID=gene1804;Name=RD04_RS09025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09025;old_locus_tag=RD04_09010 NZ_CP010961.1 Protein Homology CDS 1860093 1861505 . - 0 ID=cds1773;Parent=gene1804;Dbxref=Genbank:WP_023853559.1;Name=WP_023853559.1;Note=catalyzes the interconversion of alpha-D-mannose 1-phosphate to alpha-D-mannose 6-phosphate and alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate;gbkey=CDS;product=phosphomannomutase/phosphoglucomutase;protein_id=WP_023853559.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1861622 1862278 . - . ID=gene1805;Name=RD04_RS09030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09030;old_locus_tag=RD04_09015 NZ_CP010961.1 Protein Homology CDS 1861622 1862278 . - 0 ID=cds1774;Parent=gene1805;Dbxref=Genbank:WP_023853578.1;Name=WP_023853578.1;gbkey=CDS;product=helix-turn-helix transcriptional regulator;protein_id=WP_023853578.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1862906 1863856 . - . ID=gene1806;Name=RD04_RS09035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09035;old_locus_tag=RD04_09020;partial=true;pseudo=true;start_range=.,1862906 NZ_CP010961.1 Protein Homology CDS 1862906 1863856 . - 0 ID=cds1775;Parent=gene1806;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=integrase;pseudo=true;start_range=.,1862906;transl_table=11 NZ_CP010961.1 RefSeq gene 1863980 1865545 . - . ID=gene1807;Name=RD04_RS09040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09040;old_locus_tag=RD04_09025;pseudo=true NZ_CP010961.1 Protein Homology CDS 1863980 1865545 . - 0 ID=cds1776;Parent=gene1807;Note=internal stop;gbkey=CDS;product=phosphonate monoester hydrolase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1865562 1866527 . - . ID=gene1808;Name=RD04_RS09045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09045;old_locus_tag=RD04_09030 NZ_CP010961.1 Protein Homology CDS 1865562 1866527 . - 0 ID=cds1777;Parent=gene1808;Dbxref=Genbank:WP_010930661.1;Name=WP_010930661.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930661.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1866621 1867148 . + . ID=gene1809;Name=RD04_RS09050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09050;old_locus_tag=RD04_09035;pseudo=true NZ_CP010961.1 Protein Homology CDS 1866621 1867148 . + 0 ID=cds1778;Parent=gene1809;Note=internal stop;gbkey=CDS;product=DNA-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1867282 1869390 . + . ID=gene1810;Name=RD04_RS09055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09055;old_locus_tag=RD04_09040 NZ_CP010961.1 Protein Homology CDS 1867282 1869390 . + 0 ID=cds1779;Parent=gene1810;Dbxref=Genbank:WP_010930660.1;Name=WP_010930660.1;gbkey=CDS;product=ferrisiderophore receptor;protein_id=WP_010930660.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1869401 1870807 . - . ID=gene1811;Name=RD04_RS09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09060;old_locus_tag=RD04_09045 NZ_CP010961.1 Protein Homology CDS 1869401 1870807 . - 0 ID=cds1780;Parent=gene1811;Dbxref=Genbank:WP_061363663.1;Name=WP_061363663.1;gbkey=CDS;product=ferric reductase;protein_id=WP_061363663.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1870863 1872754 . - . ID=gene1812;Name=RD04_RS09065;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09065;old_locus_tag=RD04_09050;pseudo=true NZ_CP010961.1 Protein Homology CDS 1870863 1872754 . - 0 ID=cds1781;Parent=gene1812;Note=frameshifted;gbkey=CDS;product=aldehyde dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1872880 1873896 . - . ID=gene1813;Name=RD04_RS09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09070;old_locus_tag=RD04_09055 NZ_CP010961.1 Protein Homology CDS 1872880 1873896 . - 0 ID=cds1782;Parent=gene1813;Dbxref=Genbank:WP_010930525.1;Name=WP_010930525.1;gbkey=CDS;product=transposase;protein_id=WP_010930525.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1874088 1874705 . - . ID=gene1814;Name=RD04_RS09075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09075;old_locus_tag=RD04_09060 NZ_CP010961.1 Protein Homology CDS 1874088 1874705 . - 0 ID=cds1783;Parent=gene1814;Dbxref=Genbank:WP_010929893.1;Name=WP_010929893.1;gbkey=CDS;product=N-carbamoylsarcosine amidase;protein_id=WP_010929893.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1874721 1875752 . - . ID=gene1815;Name=RD04_RS09080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09080;old_locus_tag=RD04_09065 NZ_CP010961.1 Protein Homology CDS 1874721 1875752 . - 0 ID=cds1784;Parent=gene1815;Dbxref=Genbank:WP_010929892.1;Name=WP_010929892.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929892.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1875780 1876599 . - . ID=gene1816;Name=RD04_RS09085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09085;old_locus_tag=RD04_09070;pseudo=true NZ_CP010961.1 Protein Homology CDS 1875780 1876599 . - 0 ID=cds1785;Parent=gene1816;Note=frameshifted;gbkey=CDS;product=alpha/beta hydrolase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1876619 1877371 . - . ID=gene1817;Name=RD04_RS09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09090;old_locus_tag=RD04_09075 NZ_CP010961.1 Protein Homology CDS 1876619 1877371 . - 0 ID=cds1786;Parent=gene1817;Dbxref=Genbank:WP_010929891.1;Name=WP_010929891.1;gbkey=CDS;product=maleate isomerase;protein_id=WP_010929891.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1877672 1878823 . + . ID=gene1818;Name=RD04_RS09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09095;old_locus_tag=RD04_09080 NZ_CP010961.1 Protein Homology CDS 1877672 1878823 . + 0 ID=cds1787;Parent=gene1818;Dbxref=Genbank:WP_010930658.1;Name=WP_010930658.1;gbkey=CDS;product=monooxygenase;protein_id=WP_010930658.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1878933 1879421 . + . ID=gene1819;Name=RD04_RS09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09100;old_locus_tag=RD04_09085 NZ_CP010961.1 Protein Homology CDS 1878933 1879421 . + 0 ID=cds1788;Parent=gene1819;Dbxref=Genbank:WP_029443796.1;Name=WP_029443796.1;gbkey=CDS;product=(2Fe-2S)-binding protein;protein_id=WP_029443796.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1879451 1881880 . + . ID=gene1820;Name=RD04_RS09105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09105;old_locus_tag=RD04_09090 NZ_CP010961.1 GeneMarkS+ CDS 1879451 1881880 . + 0 ID=cds1789;Parent=gene1820;Dbxref=Genbank:WP_023997128.1;Name=WP_023997128.1;gbkey=CDS;product=molybdopterin-binding domain of aldehyde dehydrogenase;protein_id=WP_023997128.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1881865 1882635 . - . ID=gene1821;Name=RD04_RS09110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09110;old_locus_tag=RD04_09095 NZ_CP010961.1 Protein Homology CDS 1881865 1882635 . - 0 ID=cds1790;Parent=gene1821;Dbxref=Genbank:WP_010930656.1;Name=WP_010930656.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930656.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1882632 1883408 . - . ID=gene1822;Name=RD04_RS09115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09115;old_locus_tag=RD04_09100 NZ_CP010961.1 Protein Homology CDS 1882632 1883408 . - 0 ID=cds1791;Parent=gene1822;Dbxref=Genbank:WP_010930655.1;Name=WP_010930655.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930655.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1883405 1885354 . - . ID=gene1823;Name=RD04_RS09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09120;old_locus_tag=RD04_09105 NZ_CP010961.1 Protein Homology CDS 1883405 1885354 . - 0 ID=cds1792;Parent=gene1823;Dbxref=Genbank:WP_024001432.1;Name=WP_024001432.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_024001432.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1885446 1886654 . - . ID=gene1824;Name=RD04_RS09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09125;old_locus_tag=RD04_09110 NZ_CP010961.1 Protein Homology CDS 1885446 1886654 . - 0 ID=cds1793;Parent=gene1824;Dbxref=Genbank:WP_010930653.1;Name=WP_010930653.1;gbkey=CDS;product=branched-chain amino acid ABC transporter substrate-binding protein;protein_id=WP_010930653.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1886701 1887603 . - . ID=gene1825;Name=RD04_RS09130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09130;old_locus_tag=RD04_09115 NZ_CP010961.1 GeneMarkS+ CDS 1886701 1887603 . - 0 ID=cds1794;Parent=gene1825;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1888019 1888504 . - . ID=gene1826;Name=RD04_RS09135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09135;old_locus_tag=RD04_09120 NZ_CP010961.1 Protein Homology CDS 1888019 1888504 . - 0 ID=cds1795;Parent=gene1826;Dbxref=Genbank:WP_003820159.1;Name=WP_003820159.1;gbkey=CDS;product=MarR family transcriptional regulator;protein_id=WP_003820159.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1888721 1888797 . - . ID=gene1827;Name=RD04_RS09140;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS09140;old_locus_tag=RD04_09125 NZ_CP010961.1 tRNAscan-SE tRNA 1888721 1888797 . - . ID=rna31;Parent=gene1827;anticodon=(pos:complement(1888761..1888763));gbkey=tRNA;product=tRNA-Arg NZ_CP010961.1 tRNAscan-SE exon 1888721 1888797 . - . ID=id36;Parent=rna31;anticodon=(pos:complement(1888761..1888763));gbkey=tRNA;product=tRNA-Arg NZ_CP010961.1 RefSeq gene 1888849 1889085 . - . ID=gene1828;Name=RD04_RS09145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09145;old_locus_tag=RD04_09130 NZ_CP010961.1 Protein Homology CDS 1888849 1889085 . - 0 ID=cds1796;Parent=gene1828;Dbxref=Genbank:WP_010930652.1;Name=WP_010930652.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930652.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1889294 1891279 . + . ID=gene1829;Name=RD04_RS09150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09150;old_locus_tag=RD04_09135 NZ_CP010961.1 Protein Homology CDS 1889294 1891279 . + 0 ID=cds1797;Parent=gene1829;Dbxref=Genbank:WP_010930651.1;Name=WP_010930651.1;gbkey=CDS;product=poly-beta-1%2C6 N-acetyl-D-glucosamine export porin PgaA;protein_id=WP_010930651.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1891285 1893390 . + . ID=gene1830;Name=RD04_RS09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09155;old_locus_tag=RD04_09140 NZ_CP010961.1 Protein Homology CDS 1891285 1893390 . + 0 ID=cds1798;Parent=gene1830;Dbxref=Genbank:WP_010930650.1;Name=WP_010930650.1;gbkey=CDS;product=poly-beta-1%2C6-N-acetyl-D-glucosamine N-deacetylase PgaB;protein_id=WP_010930650.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1893394 1894653 . + . ID=gene1831;Name=RD04_RS09160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09160;old_locus_tag=RD04_09145 NZ_CP010961.1 Protein Homology CDS 1893394 1894653 . + 0 ID=cds1799;Parent=gene1831;Dbxref=Genbank:WP_003820153.1;Name=WP_003820153.1;Note=predicted polysaccharide polymerase involved in biofilm formation%3B required for the synthesis of the beta-1%2C6-N-acetylglucosamine polysaccharide%3B PgaC%3B in Yersinia the HmsR protein is an inner membrane protein;gbkey=CDS;product=poly-beta-1%2C6 N-acetyl-D-glucosamine synthase;protein_id=WP_003820153.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1894634 1895272 . + . ID=gene1832;Name=RD04_RS09165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09165;old_locus_tag=RD04_09150 NZ_CP010961.1 Protein Homology CDS 1894634 1895272 . + 0 ID=cds1800;Parent=gene1832;Dbxref=Genbank:WP_015041299.1;Name=WP_015041299.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_015041299.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1895277 1896389 . - . ID=gene1833;Name=RD04_RS09170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09170;old_locus_tag=RD04_09155 NZ_CP010961.1 Protein Homology CDS 1895277 1896389 . - 0 ID=cds1801;Parent=gene1833;Dbxref=Genbank:WP_010930648.1;Name=WP_010930648.1;gbkey=CDS;product=alkene reductase;protein_id=WP_010930648.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1896442 1896735 . - . ID=gene1834;Name=RD04_RS09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09175;old_locus_tag=RD04_09160 NZ_CP010961.1 Protein Homology CDS 1896442 1896735 . - 0 ID=cds1802;Parent=gene1834;Dbxref=Genbank:WP_033446196.1;Name=WP_033446196.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_033446196.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1896949 1897398 . + . ID=gene1835;Name=RD04_RS09180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09180;old_locus_tag=RD04_09165 NZ_CP010961.1 Protein Homology CDS 1896949 1897398 . + 0 ID=cds1803;Parent=gene1835;Dbxref=Genbank:WP_010930647.1;Name=WP_010930647.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930647.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1897405 1897740 . + . ID=gene1836;Name=RD04_RS09185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09185;old_locus_tag=RD04_09170 NZ_CP010961.1 Protein Homology CDS 1897405 1897740 . + 0 ID=cds1804;Parent=gene1836;Dbxref=Genbank:WP_003820150.1;Name=WP_003820150.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820150.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1897754 1898230 . + . ID=gene1837;Name=RD04_RS09190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09190;old_locus_tag=RD04_09175 NZ_CP010961.1 Protein Homology CDS 1897754 1898230 . + 0 ID=cds1805;Parent=gene1837;Dbxref=Genbank:WP_010930646.1;Name=WP_010930646.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930646.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1898234 1898626 . + . ID=gene1838;Name=RD04_RS09195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09195;old_locus_tag=RD04_09180 NZ_CP010961.1 Protein Homology CDS 1898234 1898626 . + 0 ID=cds1806;Parent=gene1838;Dbxref=Genbank:WP_003820147.1;Name=WP_003820147.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820147.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1898695 1899651 . + . ID=gene1839;Name=RD04_RS09200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09200;old_locus_tag=RD04_09185 NZ_CP010961.1 Protein Homology CDS 1898695 1899651 . + 0 ID=cds1807;Parent=gene1839;Dbxref=Genbank:WP_010930645.1;Name=WP_010930645.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010930645.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1899652 1901772 . + . ID=gene1840;Name=RD04_RS09205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09205;old_locus_tag=RD04_09190 NZ_CP010961.1 Protein Homology CDS 1899652 1901772 . + 0 ID=cds1808;Parent=gene1840;Dbxref=Genbank:WP_010930644.1;Name=WP_010930644.1;gbkey=CDS;product=pimeloyl-CoA synthetase;protein_id=WP_010930644.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1901781 1902485 . + . ID=gene1841;Name=RD04_RS09210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09210;old_locus_tag=RD04_09195 NZ_CP010961.1 Protein Homology CDS 1901781 1902485 . + 0 ID=cds1809;Parent=gene1841;Dbxref=Genbank:WP_019247348.1;Name=WP_019247348.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_019247348.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1902644 1903672 . + . ID=gene1842;Name=RD04_RS09215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09215;old_locus_tag=RD04_09200 NZ_CP010961.1 Protein Homology CDS 1902644 1903672 . + 0 ID=cds1810;Parent=gene1842;Dbxref=Genbank:WP_010930643.1;Name=WP_010930643.1;gbkey=CDS;product=NADH-dependent flavin oxidoreductase;protein_id=WP_010930643.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1903921 1903997 . - . ID=gene1843;Name=RD04_RS09220;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS09220;old_locus_tag=RD04_09205 NZ_CP010961.1 tRNAscan-SE tRNA 1903921 1903997 . - . ID=rna32;Parent=gene1843;anticodon=(pos:complement(1903961..1903963));gbkey=tRNA;product=tRNA-Arg NZ_CP010961.1 tRNAscan-SE exon 1903921 1903997 . - . ID=id37;Parent=rna32;anticodon=(pos:complement(1903961..1903963));gbkey=tRNA;product=tRNA-Arg NZ_CP010961.1 RefSeq gene 1904079 1905170 . - . ID=gene1844;Name=RD04_RS09225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09225;old_locus_tag=RD04_09210 NZ_CP010961.1 Protein Homology CDS 1904079 1905170 . - 0 ID=cds1811;Parent=gene1844;Dbxref=Genbank:WP_010930642.1;Name=WP_010930642.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930642.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1905167 1905970 . - . ID=gene1845;Name=RD04_RS09230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09230;old_locus_tag=RD04_09215 NZ_CP010961.1 Protein Homology CDS 1905167 1905970 . - 0 ID=cds1812;Parent=gene1845;Dbxref=Genbank:WP_010930641.1;Name=WP_010930641.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010930641.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1905967 1906794 . - . ID=gene1846;Name=RD04_RS09235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09235;old_locus_tag=RD04_09220 NZ_CP010961.1 Protein Homology CDS 1905967 1906794 . - 0 ID=cds1813;Parent=gene1846;Dbxref=Genbank:WP_003810039.1;Name=WP_003810039.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003810039.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1906797 1907096 . - . ID=gene1847;Name=RD04_RS09240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09240;old_locus_tag=RD04_09225 NZ_CP010961.1 Protein Homology CDS 1906797 1907096 . - 0 ID=cds1814;Parent=gene1847;Dbxref=Genbank:WP_019247347.1;Name=WP_019247347.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247347.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1907090 1908415 . - . ID=gene1848;Name=RD04_RS09245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09245;old_locus_tag=RD04_09230 NZ_CP010961.1 GeneMarkS+ CDS 1907090 1908415 . - 0 ID=cds1815;Parent=gene1848;Dbxref=Genbank:WP_029443918.1;Name=WP_029443918.1;gbkey=CDS;product=amidohydrolase;protein_id=WP_029443918.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1908432 1909556 . - . ID=gene1849;Name=RD04_RS09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09250;old_locus_tag=RD04_09235 NZ_CP010961.1 Protein Homology CDS 1908432 1909556 . - 0 ID=cds1816;Parent=gene1849;Dbxref=Genbank:WP_010930640.1;Name=WP_010930640.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930640.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1909668 1910621 . + . ID=gene1850;Name=RD04_RS09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09255;old_locus_tag=RD04_09240 NZ_CP010961.1 Protein Homology CDS 1909668 1910621 . + 0 ID=cds1817;Parent=gene1850;Dbxref=Genbank:WP_010930639.1;Name=WP_010930639.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930639.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1910626 1911264 . - . ID=gene1851;Name=RD04_RS09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09260;old_locus_tag=RD04_09245 NZ_CP010961.1 Protein Homology CDS 1910626 1911264 . - 0 ID=cds1818;Parent=gene1851;Dbxref=Genbank:WP_003820136.1;Name=WP_003820136.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_003820136.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1911352 1912119 . - . ID=gene1852;Name=RD04_RS09265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09265;old_locus_tag=RD04_09250 NZ_CP010961.1 Protein Homology CDS 1911352 1912119 . - 0 ID=cds1819;Parent=gene1852;Dbxref=Genbank:WP_010930638.1;Name=WP_010930638.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_010930638.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1912134 1912937 . - . ID=gene1853;Name=RD04_RS09270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09270;old_locus_tag=RD04_09255 NZ_CP010961.1 Protein Homology CDS 1912134 1912937 . - 0 ID=cds1820;Parent=gene1853;Dbxref=Genbank:WP_003820133.1;Name=WP_003820133.1;Note=catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis;gbkey=CDS;product=aspartate dehydrogenase;protein_id=WP_003820133.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1912934 1913743 . - . ID=gene1854;Name=RD04_RS09275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09275;old_locus_tag=RD04_09260 NZ_CP010961.1 Protein Homology CDS 1912934 1913743 . - 0 ID=cds1821;Parent=gene1854;Dbxref=Genbank:WP_010930636.1;Name=WP_010930636.1;gbkey=CDS;product=hydrolase;protein_id=WP_010930636.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1913740 1914723 . - . ID=gene1855;Name=RD04_RS09280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09280;old_locus_tag=RD04_09265 NZ_CP010961.1 Protein Homology CDS 1913740 1914723 . - 0 ID=cds1822;Parent=gene1855;Dbxref=Genbank:WP_004568037.1;Name=WP_004568037.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter substrate-binding protein;protein_id=WP_004568037.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1914752 1916020 . - . ID=gene1856;Name=RD04_RS09285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09285;old_locus_tag=RD04_09270 NZ_CP010961.1 Protein Homology CDS 1914752 1916020 . - 0 ID=cds1823;Parent=gene1856;Dbxref=Genbank:WP_003820128.1;Name=WP_003820128.1;gbkey=CDS;product=membrane protein;protein_id=WP_003820128.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1916023 1916547 . - . ID=gene1857;Name=RD04_RS09290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09290;old_locus_tag=RD04_09275 NZ_CP010961.1 Protein Homology CDS 1916023 1916547 . - 0 ID=cds1824;Parent=gene1857;Dbxref=Genbank:WP_003810020.1;Name=WP_003810020.1;gbkey=CDS;product=membrane protein;protein_id=WP_003810020.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1916544 1917485 . - . ID=gene1858;Name=RD04_RS09295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09295;old_locus_tag=RD04_09280 NZ_CP010961.1 Protein Homology CDS 1916544 1917485 . - 0 ID=cds1825;Parent=gene1858;Dbxref=Genbank:WP_010930635.1;Name=WP_010930635.1;gbkey=CDS;product=3-hydroxyacyl-CoA dehydrogenase;protein_id=WP_010930635.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1917495 1917809 . - . ID=gene1859;Name=RD04_RS09300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09300;old_locus_tag=RD04_09285 NZ_CP010961.1 Protein Homology CDS 1917495 1917809 . - 0 ID=cds1826;Parent=gene1859;Dbxref=Genbank:WP_003810016.1;Name=WP_003810016.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003810016.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1917851 1918351 . - . ID=gene1860;Name=RD04_RS09305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09305;old_locus_tag=RD04_09290 NZ_CP010961.1 Protein Homology CDS 1917851 1918351 . - 0 ID=cds1827;Parent=gene1860;Dbxref=Genbank:WP_010930634.1;Name=WP_010930634.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930634.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1918695 1919711 . + . ID=gene1861;Name=RD04_RS09310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09310;old_locus_tag=RD04_09295 NZ_CP010961.1 Protein Homology CDS 1918695 1919711 . + 0 ID=cds1828;Parent=gene1861;Dbxref=Genbank:WP_010929632.1;Name=WP_010929632.1;gbkey=CDS;product=transposase;protein_id=WP_010929632.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1919928 1920020 . - . ID=gene1862;Name=RD04_RS09315;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS09315;old_locus_tag=RD04_09300 NZ_CP010961.1 tRNAscan-SE tRNA 1919928 1920020 . - . ID=rna33;Parent=gene1862;anticodon=(pos:complement(1919984..1919986));gbkey=tRNA;product=tRNA-Ser NZ_CP010961.1 tRNAscan-SE exon 1919928 1920020 . - . ID=id38;Parent=rna33;anticodon=(pos:complement(1919984..1919986));gbkey=tRNA;product=tRNA-Ser NZ_CP010961.1 RefSeq gene 1920105 1921370 . - . ID=gene1863;Name=RD04_RS09320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09320;old_locus_tag=RD04_09305 NZ_CP010961.1 Protein Homology CDS 1920105 1921370 . - 0 ID=cds1829;Parent=gene1863;Dbxref=Genbank:WP_010930633.1;Name=WP_010930633.1;Note=catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP%2C in Bacillus%2C lysine sensitive%3B regulated by response to starvation.;gbkey=CDS;product=aspartate kinase;protein_id=WP_010930633.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1921470 1922504 . - . ID=gene1864;Name=RD04_RS09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09325;old_locus_tag=RD04_09310 NZ_CP010961.1 Protein Homology CDS 1921470 1922504 . - 0 ID=cds1830;Parent=gene1864;Dbxref=Genbank:WP_029443761.1;Name=WP_029443761.1;gbkey=CDS;product=tRNA(Ile)-lysidine synthetase;protein_id=WP_029443761.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1922565 1923391 . - . ID=gene1865;Name=RD04_RS09330;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09330;old_locus_tag=RD04_09315;pseudo=true NZ_CP010961.1 Protein Homology CDS 1922565 1923391 . - 0 ID=cds1831;Parent=gene1865;Note=frameshifted;gbkey=CDS;product=integrase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1923613 1924578 . - . ID=gene1866;Name=RD04_RS09335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09335;old_locus_tag=RD04_09320 NZ_CP010961.1 Protein Homology CDS 1923613 1924578 . - 0 ID=cds1832;Parent=gene1866;Dbxref=Genbank:WP_003810007.1;Name=WP_003810007.1;gbkey=CDS;product=acetyl-CoA carboxylase carboxyl transferase subunit alpha;protein_id=WP_003810007.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1924615 1925259 . - . ID=gene1867;Name=RD04_RS09340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09340;old_locus_tag=RD04_09325 NZ_CP010961.1 Protein Homology CDS 1924615 1925259 . - 0 ID=cds1833;Parent=gene1867;Dbxref=Genbank:WP_003820119.1;Name=WP_003820119.1;gbkey=CDS;product=DNA-3-methyladenine glycosylase;protein_id=WP_003820119.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1925279 1926739 . - . ID=gene1868;Name=RD04_RS09345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09345;old_locus_tag=RD04_09330 NZ_CP010961.1 Protein Homology CDS 1925279 1926739 . - 0 ID=cds1834;Parent=gene1868;Dbxref=Genbank:WP_010930630.1;Name=WP_010930630.1;gbkey=CDS;product=cysteine--tRNA ligase;protein_id=WP_010930630.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1926979 1927662 . + . ID=gene1869;Name=RD04_RS09350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09350;old_locus_tag=RD04_09335 NZ_CP010961.1 Protein Homology CDS 1926979 1927662 . + 0 ID=cds1835;Parent=gene1869;Dbxref=Genbank:WP_010930629.1;Name=WP_010930629.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930629.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1927791 1928300 . + . ID=gene1870;Name=RD04_RS09355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09355;old_locus_tag=RD04_09340 NZ_CP010961.1 Protein Homology CDS 1927791 1928300 . + 0 ID=cds1836;Parent=gene1870;Dbxref=Genbank:WP_003809999.1;Name=WP_003809999.1;gbkey=CDS;product=cyclophilin;protein_id=WP_003809999.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1928293 1929069 . + . ID=gene1871;Name=RD04_RS09360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09360;old_locus_tag=RD04_09345 NZ_CP010961.1 Protein Homology CDS 1928293 1929069 . + 0 ID=cds1837;Parent=gene1871;Dbxref=Genbank:WP_019247344.1;Name=WP_019247344.1;gbkey=CDS;product=UDP-2%2C3-diacylglucosamine hydrolase;protein_id=WP_019247344.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1929277 1930140 . - . ID=gene1872;Name=RD04_RS09365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09365;old_locus_tag=RD04_09350 NZ_CP010961.1 Protein Homology CDS 1929277 1930140 . - 0 ID=cds1838;Parent=gene1872;Dbxref=Genbank:WP_010930627.1;Name=WP_010930627.1;gbkey=CDS;product=undecaprenyl-diphosphatase;protein_id=WP_010930627.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1930165 1931751 . - . ID=gene1873;Name=RD04_RS09370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09370;old_locus_tag=RD04_09355 NZ_CP010961.1 Protein Homology CDS 1930165 1931751 . - 0 ID=cds1839;Parent=gene1873;Dbxref=Genbank:WP_003809992.1;Name=WP_003809992.1;gbkey=CDS;product=membrane protein;protein_id=WP_003809992.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1931878 1932660 . - . ID=gene1874;Name=RD04_RS09375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09375;old_locus_tag=RD04_09360 NZ_CP010961.1 Protein Homology CDS 1931878 1932660 . - 0 ID=cds1840;Parent=gene1874;Dbxref=Genbank:WP_010930626.1;Name=WP_010930626.1;gbkey=CDS;product=inositol monophosphatase;protein_id=WP_010930626.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1932801 1933544 . + . ID=gene1875;Name=RD04_RS09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09380;old_locus_tag=RD04_09365 NZ_CP010961.1 Protein Homology CDS 1932801 1933544 . + 0 ID=cds1841;Parent=gene1875;Dbxref=Genbank:WP_033446182.1;Name=WP_033446182.1;gbkey=CDS;product=RNA methyltransferase;protein_id=WP_033446182.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1933762 1934754 . - . ID=gene1876;Name=RD04_RS09385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09385;old_locus_tag=RD04_09370 NZ_CP010961.1 Protein Homology CDS 1933762 1934754 . - 0 ID=cds1842;Parent=gene1876;Dbxref=Genbank:WP_010930624.1;Name=WP_010930624.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010930624.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1934916 1935674 . + . ID=gene1877;Name=RD04_RS09390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09390;old_locus_tag=RD04_09375 NZ_CP010961.1 Protein Homology CDS 1934916 1935674 . + 0 ID=cds1843;Parent=gene1877;Dbxref=Genbank:WP_010930623.1;Name=WP_010930623.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010930623.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1935688 1936521 . - . ID=gene1878;Name=RD04_RS09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09395;old_locus_tag=RD04_09380 NZ_CP010961.1 Protein Homology CDS 1935688 1936521 . - 0 ID=cds1844;Parent=gene1878;Dbxref=Genbank:WP_003809983.1;Name=WP_003809983.1;gbkey=CDS;product=membrane protein;protein_id=WP_003809983.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1936627 1937576 . - . ID=gene1879;Name=RD04_RS09400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09400;old_locus_tag=RD04_09385;pseudo=true NZ_CP010961.1 Protein Homology CDS 1936627 1937576 . - 0 ID=cds1845;Parent=gene1879;Note=frameshifted;gbkey=CDS;product=integrase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1937681 1938712 . + . ID=gene1880;Name=RD04_RS09405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09405;old_locus_tag=RD04_09390 NZ_CP010961.1 Protein Homology CDS 1937681 1938712 . + 0 ID=cds1846;Parent=gene1880;Dbxref=Genbank:WP_010930622.1;Name=WP_010930622.1;gbkey=CDS;product=peptidase C45;protein_id=WP_010930622.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1938726 1942349 . - . ID=gene1881;Name=RD04_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09410;old_locus_tag=RD04_09395 NZ_CP010961.1 Protein Homology CDS 1938726 1942349 . - 0 ID=cds1847;Parent=gene1881;Dbxref=Genbank:WP_010930621.1;Name=WP_010930621.1;gbkey=CDS;product=5-oxoprolinase;protein_id=WP_010930621.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1942428 1942940 . - . ID=gene1882;Name=RD04_RS09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09415;old_locus_tag=RD04_09400 NZ_CP010961.1 Protein Homology CDS 1942428 1942940 . - 0 ID=cds1848;Parent=gene1882;Dbxref=Genbank:WP_010930620.1;Name=WP_010930620.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010930620.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1943084 1943951 . + . ID=gene1883;Name=RD04_RS09420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09420;old_locus_tag=RD04_09405;pseudo=true NZ_CP010961.1 Protein Homology CDS 1943084 1943951 . + 0 ID=cds1849;Parent=gene1883;Note=frameshifted;gbkey=CDS;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1944115 1944816 . + . ID=gene1884;Name=RD04_RS09425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09425;old_locus_tag=RD04_09410 NZ_CP010961.1 Protein Homology CDS 1944115 1944816 . + 0 ID=cds1850;Parent=gene1884;Dbxref=Genbank:WP_019247163.1;Name=WP_019247163.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247163.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1944837 1945802 . + . ID=gene1885;Name=RD04_RS09430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09430;old_locus_tag=RD04_09415 NZ_CP010961.1 Protein Homology CDS 1944837 1945802 . + 0 ID=cds1851;Parent=gene1885;Dbxref=Genbank:WP_010930618.1;Name=WP_010930618.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter substrate-binding protein;protein_id=WP_010930618.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1945816 1946307 . + . ID=gene1886;Name=RD04_RS09435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09435;old_locus_tag=RD04_09420 NZ_CP010961.1 Protein Homology CDS 1945816 1946307 . + 0 ID=cds1852;Parent=gene1886;Dbxref=Genbank:WP_010930617.1;Name=WP_010930617.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930617.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1946300 1947600 . + . ID=gene1887;Name=RD04_RS09440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09440;old_locus_tag=RD04_09425;pseudo=true NZ_CP010961.1 Protein Homology CDS 1946300 1947600 . + 0 ID=cds1853;Parent=gene1887;Note=frameshifted;gbkey=CDS;product=C4-dicarboxylate ABC transporter permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1947864 1948838 . + . ID=gene1888;Name=RD04_RS09445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09445;old_locus_tag=RD04_09430 NZ_CP010961.1 Protein Homology CDS 1947864 1948838 . + 0 ID=cds1854;Parent=gene1888;Dbxref=Genbank:WP_010930616.1;Name=WP_010930616.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter substrate-binding protein;protein_id=WP_010930616.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1948845 1949345 . + . ID=gene1889;Name=RD04_RS09450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09450;old_locus_tag=RD04_09435 NZ_CP010961.1 Protein Homology CDS 1948845 1949345 . + 0 ID=cds1855;Parent=gene1889;Dbxref=Genbank:WP_010930615.1;Name=WP_010930615.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930615.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1949338 1950637 . + . ID=gene1890;Name=RD04_RS09455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09455;old_locus_tag=RD04_09440;pseudo=true NZ_CP010961.1 Protein Homology CDS 1949338 1950637 . + 0 ID=cds1856;Parent=gene1890;Note=frameshifted;gbkey=CDS;product=C4-dicarboxylate ABC transporter permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1950663 1952417 . - . ID=gene1891;Name=RD04_RS09460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09460;old_locus_tag=RD04_09445 NZ_CP010961.1 Protein Homology CDS 1950663 1952417 . - 0 ID=cds1857;Parent=gene1891;Dbxref=Genbank:WP_010930614.1;Name=WP_010930614.1;gbkey=CDS;product=filamentous hemagglutinin transporter protein FhaC;protein_id=WP_010930614.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1952410 1953540 . - . ID=gene1892;Name=RD04_RS09465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09465;old_locus_tag=RD04_09450 NZ_CP010961.1 Protein Homology CDS 1952410 1953540 . - 0 ID=cds1858;Parent=gene1892;Dbxref=Genbank:WP_019247160.1;Name=WP_019247160.1;gbkey=CDS;product=protein fhaE;protein_id=WP_019247160.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1953521 1956142 . - . ID=gene1893;Name=RD04_RS09470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09470;old_locus_tag=RD04_09455 NZ_CP010961.1 Protein Homology CDS 1953521 1956142 . - 0 ID=cds1859;Parent=gene1893;Dbxref=Genbank:WP_010930612.1;Name=WP_010930612.1;gbkey=CDS;product=outer membrane usher protein FimC;protein_id=WP_010930612.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1956205 1957029 . - . ID=gene1894;Name=RD04_RS09475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09475;old_locus_tag=RD04_09460 NZ_CP010961.1 Protein Homology CDS 1956205 1957029 . - 0 ID=cds1860;Parent=gene1894;Dbxref=Genbank:WP_014905775.1;Name=WP_014905775.1;gbkey=CDS;product=molecular chaperone;protein_id=WP_014905775.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1957189 1957626 . - . ID=gene1895;Name=RD04_RS09480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09480;old_locus_tag=RD04_09465 NZ_CP010961.1 Protein Homology CDS 1957189 1957626 . - 0 ID=cds1861;Parent=gene1895;Dbxref=Genbank:WP_019247159.1;Name=WP_019247159.1;gbkey=CDS;product=protein FimA;protein_id=WP_019247159.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1957702 1968474 . - . ID=gene1896;Name=RD04_RS09485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09485;old_locus_tag=RD04_09470 NZ_CP010961.1 Protein Homology CDS 1957702 1968474 . - 0 ID=cds1862;Parent=gene1896;Dbxref=Genbank:WP_010930610.1;Name=WP_010930610.1;gbkey=CDS;product=filamentous hemagglutinin;protein_id=WP_010930610.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1968901 1969530 . + . ID=gene1897;Name=RD04_RS09490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09490;old_locus_tag=RD04_09475 NZ_CP010961.1 Protein Homology CDS 1968901 1969530 . + 0 ID=cds1863;Parent=gene1897;Dbxref=Genbank:WP_010930609.1;Name=WP_010930609.1;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_010930609.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1969539 1973255 . + . ID=gene1898;Name=RD04_RS09495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09495;old_locus_tag=RD04_09480 NZ_CP010961.1 Protein Homology CDS 1969539 1973255 . + 0 ID=cds1864;Parent=gene1898;Dbxref=Genbank:WP_014486076.1;Name=WP_014486076.1;gbkey=CDS;product=hybrid sensor histidine kinase/response regulator;protein_id=WP_014486076.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1973299 1974174 . - . ID=gene1899;Name=RD04_RS09500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09500;old_locus_tag=RD04_09485 NZ_CP010961.1 Protein Homology CDS 1973299 1974174 . - 0 ID=cds1865;Parent=gene1899;Dbxref=Genbank:WP_003816497.1;Name=WP_003816497.1;gbkey=CDS;product=diguanylate phosphodiesterase;protein_id=WP_003816497.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1974308 1975102 . - . ID=gene1900;Name=RD04_RS09505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09505;old_locus_tag=RD04_09490 NZ_CP010961.1 Protein Homology CDS 1974308 1975102 . - 0 ID=cds1866;Parent=gene1900;Dbxref=Genbank:WP_010930607.1;Name=WP_010930607.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930607.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1975160 1976509 . - . ID=gene1901;Name=RD04_RS09510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09510;old_locus_tag=RD04_09495 NZ_CP010961.1 Protein Homology CDS 1975160 1976509 . - 0 ID=cds1867;Parent=gene1901;Dbxref=Genbank:WP_010930606.1;Name=WP_010930606.1;Note=catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia;gbkey=CDS;product=amidase;protein_id=WP_010930606.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1976570 1977256 . - . ID=gene1902;Name=RD04_RS09515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09515;old_locus_tag=RD04_09500;pseudo=true NZ_CP010961.1 Protein Homology CDS 1976570 1977256 . - 0 ID=cds1868;Parent=gene1902;Note=internal stop;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1977312 1978553 . - . ID=gene1903;Name=RD04_RS09520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09520;old_locus_tag=RD04_09505;pseudo=true NZ_CP010961.1 Protein Homology CDS 1977312 1978553 . - 0 ID=cds1869;Parent=gene1903;Note=internal stop;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1978526 1978924 . - . ID=gene1904;Name=RD04_RS09525;end_range=1978924,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09525;old_locus_tag=RD04_09510;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 1978526 1978924 . - 0 ID=cds1870;Parent=gene1904;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=1978924,.;gbkey=CDS;partial=true;product=integrase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1979208 1979588 . + . ID=gene1905;Name=RD04_RS09530;end_range=1979588,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09530;old_locus_tag=RD04_09515;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 1979208 1979588 . + 0 ID=cds1871;Parent=gene1905;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=1979588,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1979695 1980645 . + . ID=gene1906;Name=RD04_RS09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09535;old_locus_tag=RD04_09520 NZ_CP010961.1 Protein Homology CDS 1979695 1980645 . + 0 ID=cds1872;Parent=gene1906;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1980762 1981481 . + . ID=gene1907;Name=RD04_RS09540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09540;old_locus_tag=RD04_09525 NZ_CP010961.1 Protein Homology CDS 1980762 1981481 . + 0 ID=cds1873;Parent=gene1907;Dbxref=Genbank:WP_003811701.1;Name=WP_003811701.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_003811701.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1981654 1982640 . + . ID=gene1908;Name=RD04_RS09545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09545;old_locus_tag=RD04_09530 NZ_CP010961.1 Protein Homology CDS 1981654 1982640 . + 0 ID=cds1874;Parent=gene1908;Dbxref=Genbank:WP_010930605.1;Name=WP_010930605.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter substrate-binding protein;protein_id=WP_010930605.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1982641 1983123 . + . ID=gene1909;Name=RD04_RS09550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09550;old_locus_tag=RD04_09535 NZ_CP010961.1 Protein Homology CDS 1982641 1983123 . + 0 ID=cds1875;Parent=gene1909;Dbxref=Genbank:WP_010930604.1;Name=WP_010930604.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930604.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1983127 1984410 . + . ID=gene1910;Name=RD04_RS09555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09555;old_locus_tag=RD04_09540 NZ_CP010961.1 Protein Homology CDS 1983127 1984410 . + 0 ID=cds1876;Parent=gene1910;Dbxref=Genbank:WP_003811706.1;Name=WP_003811706.1;gbkey=CDS;product=membrane protein;protein_id=WP_003811706.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1984407 1985345 . + . ID=gene1911;Name=RD04_RS09560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09560;old_locus_tag=RD04_09545 NZ_CP010961.1 Protein Homology CDS 1984407 1985345 . + 0 ID=cds1877;Parent=gene1911;Dbxref=Genbank:WP_003811709.1;Name=WP_003811709.1;gbkey=CDS;product=citrate lyase subunit beta;protein_id=WP_003811709.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1985342 1987051 . + . ID=gene1912;Name=RD04_RS09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09565;old_locus_tag=RD04_09550 NZ_CP010961.1 Protein Homology CDS 1985342 1987051 . + 0 ID=cds1878;Parent=gene1912;Dbxref=Genbank:WP_010930603.1;Name=WP_010930603.1;gbkey=CDS;product=thiamine pyrophosphate protein;protein_id=WP_010930603.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1987061 1988308 . + . ID=gene1913;Name=RD04_RS09570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09570;old_locus_tag=RD04_09555 NZ_CP010961.1 Protein Homology CDS 1987061 1988308 . + 0 ID=cds1879;Parent=gene1913;Dbxref=Genbank:WP_010930602.1;Name=WP_010930602.1;gbkey=CDS;product=Zn-dependent hydrolase;protein_id=WP_010930602.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1988358 1989843 . + . ID=gene1914;Name=RD04_RS09575;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09575;old_locus_tag=RD04_09560;pseudo=true NZ_CP010961.1 Protein Homology CDS 1988358 1989843 . + 0 ID=cds1880;Parent=gene1914;Note=frameshifted;gbkey=CDS;product=aldehyde dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1989919 1991208 . - . ID=gene1915;Name=RD04_RS09580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09580;old_locus_tag=RD04_09565 NZ_CP010961.1 Protein Homology CDS 1989919 1991208 . - 0 ID=cds1881;Parent=gene1915;Dbxref=Genbank:WP_003811716.1;Name=WP_003811716.1;gbkey=CDS;product=glutamate dehydrogenase;protein_id=WP_003811716.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1991401 1992349 . - . ID=gene1916;Name=RD04_RS09585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09585;old_locus_tag=RD04_09570;pseudo=true NZ_CP010961.1 Protein Homology CDS 1991401 1992349 . - 0 ID=cds1882;Parent=gene1916;Note=frameshifted;gbkey=CDS;product=formimidoylglutamase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1992346 1993119 . - . ID=gene1917;Name=RD04_RS09590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09590;old_locus_tag=RD04_09575 NZ_CP010961.1 Protein Homology CDS 1992346 1993119 . - 0 ID=cds1883;Parent=gene1917;Dbxref=Genbank:WP_003811719.1;Name=WP_003811719.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003811719.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1993116 1993784 . - . ID=gene1918;Name=RD04_RS09595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09595;old_locus_tag=RD04_09580;pseudo=true NZ_CP010961.1 Protein Homology CDS 1993116 1993784 . - 0 ID=cds1884;Parent=gene1918;Note=internal stop;gbkey=CDS;product=ABC transporter permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 1993781 1994524 . - . ID=gene1919;Name=RD04_RS09600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09600;old_locus_tag=RD04_09585 NZ_CP010961.1 Protein Homology CDS 1993781 1994524 . - 0 ID=cds1885;Parent=gene1919;Dbxref=Genbank:WP_010930601.1;Name=WP_010930601.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_010930601.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1994599 1995339 . - . ID=gene1920;Name=RD04_RS09605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09605;old_locus_tag=RD04_09590 NZ_CP010961.1 Protein Homology CDS 1994599 1995339 . - 0 ID=cds1886;Parent=gene1920;Dbxref=Genbank:WP_010930600.1;Name=WP_010930600.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010930600.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1995535 1996371 . - . ID=gene1921;Name=RD04_RS09610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09610;old_locus_tag=RD04_09595 NZ_CP010961.1 Protein Homology CDS 1995535 1996371 . - 0 ID=cds1887;Parent=gene1921;Dbxref=Genbank:WP_010930599.1;Name=WP_010930599.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930599.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1996422 1997219 . - . ID=gene1922;Name=RD04_RS09615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09615;old_locus_tag=RD04_09600 NZ_CP010961.1 Protein Homology CDS 1996422 1997219 . - 0 ID=cds1888;Parent=gene1922;Dbxref=Genbank:WP_062826644.1;Name=WP_062826644.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_062826644.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1997270 1998040 . - . ID=gene1923;Name=RD04_RS09620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09620;old_locus_tag=RD04_09605 NZ_CP010961.1 Protein Homology CDS 1997270 1998040 . - 0 ID=cds1889;Parent=gene1923;Dbxref=Genbank:WP_050818146.1;Name=WP_050818146.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_050818146.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1998090 1999142 . - . ID=gene1924;Name=RD04_RS09625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09625;old_locus_tag=RD04_09610 NZ_CP010961.1 Protein Homology CDS 1998090 1999142 . - 0 ID=cds1890;Parent=gene1924;Dbxref=Genbank:WP_010930597.1;Name=WP_010930597.1;gbkey=CDS;product=DNA polymerase III subunit delta';protein_id=WP_010930597.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1999139 1999765 . - . ID=gene1925;Name=RD04_RS09630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09630;old_locus_tag=RD04_09615 NZ_CP010961.1 Protein Homology CDS 1999139 1999765 . - 0 ID=cds1891;Parent=gene1925;Dbxref=Genbank:WP_003811733.1;Name=WP_003811733.1;gbkey=CDS;product=thymidylate kinase;protein_id=WP_003811733.1;transl_table=11 NZ_CP010961.1 RefSeq gene 1999762 2000796 . - . ID=gene1926;Name=RD04_RS09635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09635;old_locus_tag=RD04_09620 NZ_CP010961.1 Protein Homology CDS 1999762 2000796 . - 0 ID=cds1892;Parent=gene1926;Dbxref=Genbank:WP_010930596.1;Name=WP_010930596.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930596.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2000975 2001991 . + . ID=gene1927;Name=RD04_RS09640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09640;old_locus_tag=RD04_09625 NZ_CP010961.1 Protein Homology CDS 2000975 2001991 . + 0 ID=cds1893;Parent=gene1927;Dbxref=Genbank:WP_010930595.1;Name=WP_010930595.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930595.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2002384 2002785 . - . ID=gene1928;Name=RD04_RS09645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09645;old_locus_tag=RD04_09630 NZ_CP010961.1 GeneMarkS+ CDS 2002384 2002785 . - 0 ID=cds1894;Parent=gene1928;Dbxref=Genbank:WP_033446143.1;Name=WP_033446143.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446143.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2003037 2005715 . + . ID=gene1929;Name=RD04_RS09650;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09650;old_locus_tag=RD04_09635;partial=true;pseudo=true;start_range=.,2003037 NZ_CP010961.1 Protein Homology CDS 2003037 2005715 . + 0 ID=cds1895;Parent=gene1929;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=error-prone DNA polymerase;pseudo=true;start_range=.,2003037;transl_table=11 NZ_CP010961.1 RefSeq gene 2005781 2007070 . - . ID=gene1930;Name=RD04_RS09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09655;old_locus_tag=RD04_09640 NZ_CP010961.1 Protein Homology CDS 2005781 2007070 . - 0 ID=cds1896;Parent=gene1930;Dbxref=Genbank:WP_010930797.1;Name=WP_010930797.1;gbkey=CDS;product=D-amino acid dehydrogenase small subunit;protein_id=WP_010930797.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2007189 2007626 . - . ID=gene1931;Name=RD04_RS09660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09660;old_locus_tag=RD04_09645 NZ_CP010961.1 Protein Homology CDS 2007189 2007626 . - 0 ID=cds1897;Parent=gene1931;Dbxref=Genbank:WP_010930798.1;Name=WP_010930798.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_010930798.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2007670 2008878 . - . ID=gene1932;Name=RD04_RS09665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09665;old_locus_tag=RD04_09650 NZ_CP010961.1 Protein Homology CDS 2007670 2008878 . - 0 ID=cds1898;Parent=gene1932;Dbxref=Genbank:WP_010930799.1;Name=WP_010930799.1;gbkey=CDS;product=flavohemoprotein;protein_id=WP_010930799.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2009025 2009489 . + . ID=gene1933;Name=RD04_RS09670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09670;old_locus_tag=RD04_09655 NZ_CP010961.1 Protein Homology CDS 2009025 2009489 . + 0 ID=cds1899;Parent=gene1933;Dbxref=Genbank:WP_003810867.1;Name=WP_003810867.1;gbkey=CDS;product=aspartyl-tRNA amidotransferase subunit B;protein_id=WP_003810867.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2009513 2010463 . - . ID=gene1934;Name=RD04_RS09675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09675;old_locus_tag=RD04_09660 NZ_CP010961.1 Protein Homology CDS 2009513 2010463 . - 0 ID=cds1900;Parent=gene1934;Dbxref=Genbank:WP_014905945.1;Name=WP_014905945.1;gbkey=CDS;product=integrase;protein_id=WP_014905945.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2010562 2011122 . - . ID=gene1935;Name=RD04_RS09680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09680;old_locus_tag=RD04_09665 NZ_CP010961.1 Protein Homology CDS 2010562 2011122 . - 0 ID=cds1901;Parent=gene1935;Dbxref=Genbank:WP_010930801.1;Name=WP_010930801.1;gbkey=CDS;product=diaminobutyrate acetyltransferase;protein_id=WP_010930801.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2011119 2011664 . - . ID=gene1936;Name=RD04_RS09685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09685;old_locus_tag=RD04_09670 NZ_CP010961.1 Protein Homology CDS 2011119 2011664 . - 0 ID=cds1902;Parent=gene1936;Dbxref=Genbank:WP_010930802.1;Name=WP_010930802.1;gbkey=CDS;product=MarR family transcriptional regulator;protein_id=WP_010930802.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2011860 2012888 . + . ID=gene1937;Name=RD04_RS09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09690;old_locus_tag=RD04_09675 NZ_CP010961.1 Protein Homology CDS 2011860 2012888 . + 0 ID=cds1903;Parent=gene1937;Dbxref=Genbank:WP_003818661.1;Name=WP_003818661.1;gbkey=CDS;product=silent information regulator protein Sir2;protein_id=WP_003818661.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2012929 2014269 . + . ID=gene1938;Name=RD04_RS09695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09695;old_locus_tag=RD04_09680 NZ_CP010961.1 Protein Homology CDS 2012929 2014269 . + 0 ID=cds1904;Parent=gene1938;Dbxref=Genbank:WP_010930803.1;Name=WP_010930803.1;gbkey=CDS;product=aminotransferase;protein_id=WP_010930803.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2014378 2015382 . + . ID=gene1939;Name=RD04_RS09700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09700;old_locus_tag=RD04_09685 NZ_CP010961.1 Protein Homology CDS 2014378 2015382 . + 0 ID=cds1905;Parent=gene1939;Dbxref=Genbank:WP_003818658.1;Name=WP_003818658.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter substrate-binding protein;protein_id=WP_003818658.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2015489 2018089 . + . ID=gene1940;Name=RD04_RS09705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09705;old_locus_tag=RD04_09690 NZ_CP010961.1 Protein Homology CDS 2015489 2018089 . + 0 ID=cds1906;Parent=gene1940;Dbxref=Genbank:WP_010930804.1;Name=WP_010930804.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_010930804.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2018236 2019138 . + . ID=gene1941;Name=RD04_RS09710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09710;old_locus_tag=RD04_09695 NZ_CP010961.1 GeneMarkS+ CDS 2018236 2019138 . + 0 ID=cds1907;Parent=gene1941;Dbxref=Genbank:WP_039250313.1;Name=WP_039250313.1;gbkey=CDS;product=integrase;protein_id=WP_039250313.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2019135 2019407 . - . ID=gene1942;Name=RD04_RS09715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09715;old_locus_tag=RD04_09700 NZ_CP010961.1 Protein Homology CDS 2019135 2019407 . - 0 ID=cds1908;Parent=gene1942;Dbxref=Genbank:WP_003809939.1;Name=WP_003809939.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003809939.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2019666 2022377 . - . ID=gene1943;Name=RD04_RS09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09720;old_locus_tag=RD04_09705 NZ_CP010961.1 Protein Homology CDS 2019666 2022377 . - 0 ID=cds1909;Parent=gene1943;Dbxref=Genbank:WP_010930805.1;Name=WP_010930805.1;gbkey=CDS;product=autotransporter;protein_id=WP_010930805.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2022798 2022873 . - . ID=gene1944;Name=RD04_RS09725;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS09725;old_locus_tag=RD04_09710 NZ_CP010961.1 tRNAscan-SE tRNA 2022798 2022873 . - . ID=rna34;Parent=gene1944;anticodon=(pos:complement(2022838..2022840));gbkey=tRNA;product=tRNA-His NZ_CP010961.1 tRNAscan-SE exon 2022798 2022873 . - . ID=id39;Parent=rna34;anticodon=(pos:complement(2022838..2022840));gbkey=tRNA;product=tRNA-His NZ_CP010961.1 RefSeq gene 2023032 2024489 . + . ID=gene1945;Name=RD04_RS09730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09730;old_locus_tag=RD04_09715 NZ_CP010961.1 Protein Homology CDS 2023032 2024489 . + 0 ID=cds1910;Parent=gene1945;Dbxref=Genbank:WP_010930806.1;Name=WP_010930806.1;gbkey=CDS;product=cardiolipin synthetase;protein_id=WP_010930806.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2024486 2024836 . - . ID=gene1946;Name=RD04_RS09735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09735;old_locus_tag=RD04_09720 NZ_CP010961.1 Protein Homology CDS 2024486 2024836 . - 0 ID=cds1911;Parent=gene1946;Dbxref=Genbank:WP_003820087.1;Name=WP_003820087.1;gbkey=CDS;product=anti-sigma factor antagonist;protein_id=WP_003820087.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2024980 2025408 . + . ID=gene1947;Name=RD04_RS09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09740;old_locus_tag=RD04_09725 NZ_CP010961.1 Protein Homology CDS 2024980 2025408 . + 0 ID=cds1912;Parent=gene1947;Dbxref=Genbank:WP_003809933.1;Name=WP_003809933.1;gbkey=CDS;product=serine/threonine protein kinase;protein_id=WP_003809933.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2025492 2026655 . + . ID=gene1948;Name=RD04_RS09745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09745;old_locus_tag=RD04_09730 NZ_CP010961.1 Protein Homology CDS 2025492 2026655 . + 0 ID=cds1913;Parent=gene1948;Dbxref=Genbank:WP_010930807.1;Name=WP_010930807.1;gbkey=CDS;product=alanine racemase;protein_id=WP_010930807.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2026652 2029093 . - . ID=gene1949;Name=RD04_RS09750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09750;old_locus_tag=RD04_09735 NZ_CP010961.1 Protein Homology CDS 2026652 2029093 . - 0 ID=cds1914;Parent=gene1949;Dbxref=Genbank:WP_023995091.1;Name=WP_023995091.1;gbkey=CDS;product=MFS transporter;protein_id=WP_023995091.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2029178 2031199 . + . ID=gene1950;Name=RD04_RS09755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09755;old_locus_tag=RD04_09740 NZ_CP010961.1 Protein Homology CDS 2029178 2031199 . + 0 ID=cds1915;Parent=gene1950;Dbxref=Genbank:WP_010930809.1;Name=WP_010930809.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930809.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2031196 2032383 . + . ID=gene1951;Name=RD04_RS09760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09760;old_locus_tag=RD04_09745 NZ_CP010961.1 Protein Homology CDS 2031196 2032383 . + 0 ID=cds1916;Parent=gene1951;Dbxref=Genbank:WP_014905553.1;Name=WP_014905553.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014905553.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2032425 2033731 . - . ID=gene1952;Name=RD04_RS09765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS09765;old_locus_tag=RD04_09750;pseudo=true NZ_CP010961.1 Protein Homology CDS 2032425 2033731 . - 0 ID=cds1917;Parent=gene1952;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2033710 2033910 . - . ID=gene1953;Name=RD04_RS09770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09770;old_locus_tag=RD04_09755 NZ_CP010961.1 GeneMarkS+ CDS 2033710 2033910 . - 0 ID=cds1918;Parent=gene1953;Dbxref=Genbank:WP_023995090.1;Name=WP_023995090.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023995090.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2033947 2034645 . + . ID=gene1954;Name=RD04_RS09775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09775;old_locus_tag=RD04_09760 NZ_CP010961.1 Protein Homology CDS 2033947 2034645 . + 0 ID=cds1919;Parent=gene1954;Dbxref=Genbank:WP_010930812.1;Name=WP_010930812.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930812.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2034820 2035422 . + . ID=gene1955;Name=RD04_RS09780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09780;old_locus_tag=RD04_09765 NZ_CP010961.1 Protein Homology CDS 2034820 2035422 . + 0 ID=cds1920;Parent=gene1955;Dbxref=Genbank:WP_003809919.1;Name=WP_003809919.1;gbkey=CDS;product=RNA polymerase sigma factor;protein_id=WP_003809919.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2035443 2037245 . - . ID=gene1956;Name=RD04_RS09785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09785;old_locus_tag=RD04_09770 NZ_CP010961.1 Protein Homology CDS 2035443 2037245 . - 0 ID=cds1921;Parent=gene1956;Dbxref=Genbank:WP_010930813.1;Name=WP_010930813.1;gbkey=CDS;product=EscC/YscC/HrcC family type III secretion system outer membrane ring protein;protein_id=WP_010930813.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2037236 2037634 . - . ID=gene1957;Name=RD04_RS09790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09790;old_locus_tag=RD04_09775 NZ_CP010961.1 Protein Homology CDS 2037236 2037634 . - 0 ID=cds1922;Parent=gene1957;Dbxref=Genbank:WP_010930814.1;Name=WP_010930814.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930814.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2037631 2038680 . - . ID=gene1958;Name=RD04_RS09795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09795;old_locus_tag=RD04_09780 NZ_CP010961.1 Protein Homology CDS 2037631 2038680 . - 0 ID=cds1923;Parent=gene1958;Dbxref=Genbank:WP_010930815.1;Name=WP_010930815.1;gbkey=CDS;product=EscU/YscU/HrcU family type III secretion system export apparatus switch protein;protein_id=WP_010930815.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2038677 2039477 . - . ID=gene1959;Name=RD04_RS09800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09800;old_locus_tag=RD04_09785 NZ_CP010961.1 Protein Homology CDS 2038677 2039477 . - 0 ID=cds1924;Parent=gene1959;Dbxref=Genbank:WP_010930816.1;Name=WP_010930816.1;gbkey=CDS;product=EscT/YscT/HrcT family type III secretion system export apparatus protein;protein_id=WP_010930816.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2039489 2039755 . - . ID=gene1960;Name=RD04_RS09805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09805;old_locus_tag=RD04_09790 NZ_CP010961.1 Protein Homology CDS 2039489 2039755 . - 0 ID=cds1925;Parent=gene1960;Dbxref=Genbank:WP_010930817.1;Name=WP_010930817.1;gbkey=CDS;product=EscS/YscS/HrcS family type III secretion system export apparatus protein;protein_id=WP_010930817.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2039761 2040432 . - . ID=gene1961;Name=ssaR;gbkey=Gene;gene=ssaR;gene_biotype=protein_coding;locus_tag=RD04_RS09810;old_locus_tag=RD04_09795 NZ_CP010961.1 Protein Homology CDS 2039761 2040432 . - 0 ID=cds1926;Parent=gene1961;Dbxref=Genbank:WP_004568087.1;Name=WP_004568087.1;Note=part of a set of proteins involved in the infection of eukaryotic cells%3B in plant pathogens involved in the hypersensitivity response;gbkey=CDS;gene=ssaR;product=EscR/YscR/HrcR family type III secretion system export apparatus protein;protein_id=WP_004568087.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2040429 2041508 . - . ID=gene1962;Name=RD04_RS09815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09815;old_locus_tag=RD04_09800 NZ_CP010961.1 Protein Homology CDS 2040429 2041508 . - 0 ID=cds1927;Parent=gene1962;Dbxref=Genbank:WP_010930818.1;Name=WP_010930818.1;gbkey=CDS;product=type III secretion system protein;protein_id=WP_010930818.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2041505 2042053 . - . ID=gene1963;Name=RD04_RS09820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09820;old_locus_tag=RD04_09805 NZ_CP010961.1 Protein Homology CDS 2041505 2042053 . - 0 ID=cds1928;Parent=gene1963;Dbxref=Genbank:WP_010930819.1;Name=WP_010930819.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930819.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2042050 2042559 . - . ID=gene1964;Name=RD04_RS09825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09825;old_locus_tag=RD04_09810 NZ_CP010961.1 Protein Homology CDS 2042050 2042559 . - 0 ID=cds1929;Parent=gene1964;Dbxref=Genbank:WP_003820063.1;Name=WP_003820063.1;gbkey=CDS;product=type III secretion protein;protein_id=WP_003820063.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2042559 2043893 . - . ID=gene1965;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=RD04_RS09830;old_locus_tag=RD04_09815 NZ_CP010961.1 Protein Homology CDS 2042559 2043893 . - 0 ID=cds1930;Parent=gene1965;Dbxref=Genbank:WP_003820061.1;Name=WP_003820061.1;Note=involved in type III protein export during flagellum assembly;gbkey=CDS;gene=fliI;product=EscN/YscN/HrcN family type III secretion system ATPase;protein_id=WP_003820061.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2043898 2044461 . - . ID=gene1966;Name=RD04_RS09835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09835;old_locus_tag=RD04_09820 NZ_CP010961.1 Protein Homology CDS 2043898 2044461 . - 0 ID=cds1931;Parent=gene1966;Dbxref=Genbank:WP_023995095.1;Name=WP_023995095.1;gbkey=CDS;product=type III secretion apparatus protein%2C HrpE/YscL family;protein_id=WP_023995095.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2044506 2045168 . - . ID=gene1967;Name=RD04_RS09840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09840;old_locus_tag=RD04_09825 NZ_CP010961.1 Protein Homology CDS 2044506 2045168 . - 0 ID=cds1932;Parent=gene1967;Dbxref=Genbank:WP_003820059.1;Name=WP_003820059.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820059.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2045161 2045985 . - . ID=gene1968;Name=RD04_RS09845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09845;old_locus_tag=RD04_09830 NZ_CP010961.1 Protein Homology CDS 2045161 2045985 . - 0 ID=cds1933;Parent=gene1968;Dbxref=Genbank:WP_010930821.1;Name=WP_010930821.1;gbkey=CDS;product=EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein;protein_id=WP_010930821.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2045982 2046389 . - . ID=gene1969;Name=RD04_RS09850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09850;old_locus_tag=RD04_09835 NZ_CP010961.1 Protein Homology CDS 2045982 2046389 . - 0 ID=cds1934;Parent=gene1969;Dbxref=Genbank:WP_010930822.1;Name=WP_010930822.1;gbkey=CDS;product=EscI/YscI/HrpB family type III secretion system inner rod protein;protein_id=WP_010930822.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2046386 2046907 . - . ID=gene1970;Name=RD04_RS09855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09855;old_locus_tag=RD04_09840 NZ_CP010961.1 Protein Homology CDS 2046386 2046907 . - 0 ID=cds1935;Parent=gene1970;Dbxref=Genbank:WP_010930823.1;Name=WP_010930823.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930823.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2046912 2047373 . - . ID=gene1971;Name=RD04_RS09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09860;old_locus_tag=RD04_09845 NZ_CP010961.1 Protein Homology CDS 2046912 2047373 . - 0 ID=cds1936;Parent=gene1971;Dbxref=Genbank:WP_003809889.1;Name=WP_003809889.1;gbkey=CDS;product=CesD/SycD/LcrH family type III secretion system chaperone;protein_id=WP_003809889.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2047397 2048599 . - . ID=gene1972;Name=RD04_RS09865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09865;old_locus_tag=RD04_09850 NZ_CP010961.1 Protein Homology CDS 2047397 2048599 . - 0 ID=cds1937;Parent=gene1972;Dbxref=Genbank:WP_033446256.1;Name=WP_033446256.1;gbkey=CDS;product=membrane protein;protein_id=WP_033446256.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2048629 2049570 . - . ID=gene1973;Name=RD04_RS09870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09870;old_locus_tag=RD04_09855 NZ_CP010961.1 Protein Homology CDS 2048629 2049570 . - 0 ID=cds1938;Parent=gene1973;Dbxref=Genbank:WP_010930825.1;Name=WP_010930825.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930825.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2049618 2050103 . - . ID=gene1974;Name=RD04_RS09875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09875;old_locus_tag=RD04_09860 NZ_CP010961.1 Protein Homology CDS 2049618 2050103 . - 0 ID=cds1939;Parent=gene1974;Dbxref=Genbank:WP_004568102.1;Name=WP_004568102.1;gbkey=CDS;product=CesD/SycD/LcrH family type III secretion system chaperone;protein_id=WP_004568102.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2050119 2050394 . - . ID=gene1975;Name=RD04_RS09880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09880;old_locus_tag=RD04_09865 NZ_CP010961.1 Protein Homology CDS 2050119 2050394 . - 0 ID=cds1940;Parent=gene1975;Dbxref=Genbank:WP_010930826.1;Name=WP_010930826.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930826.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2050416 2051033 . - . ID=gene1976;Name=RD04_RS09885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09885;old_locus_tag=RD04_09870 NZ_CP010961.1 Protein Homology CDS 2050416 2051033 . - 0 ID=cds1941;Parent=gene1976;Dbxref=Genbank:WP_003820049.1;Name=WP_003820049.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820049.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2051197 2052294 . + . ID=gene1977;Name=RD04_RS09890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09890;old_locus_tag=RD04_09875 NZ_CP010961.1 Protein Homology CDS 2051197 2052294 . + 0 ID=cds1942;Parent=gene1977;Dbxref=Genbank:WP_010930827.1;Name=WP_010930827.1;gbkey=CDS;product=SepL/TyeA/HrpJ family type III secretion system gatekeeper;protein_id=WP_010930827.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2052291 2052668 . + . ID=gene1978;Name=RD04_RS09895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09895;old_locus_tag=RD04_09880 NZ_CP010961.1 Protein Homology CDS 2052291 2052668 . + 0 ID=cds1943;Parent=gene1978;Dbxref=Genbank:WP_010930828.1;Name=WP_010930828.1;gbkey=CDS;product=type III secretion chaperone SycN;protein_id=WP_010930828.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2052673 2053083 . + . ID=gene1979;Name=RD04_RS09900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09900;old_locus_tag=RD04_09885 NZ_CP010961.1 Protein Homology CDS 2052673 2053083 . + 0 ID=cds1944;Parent=gene1979;Dbxref=Genbank:WP_010930829.1;Name=WP_010930829.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930829.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2053080 2053448 . + . ID=gene1980;Name=RD04_RS09905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09905;old_locus_tag=RD04_09890 NZ_CP010961.1 Protein Homology CDS 2053080 2053448 . + 0 ID=cds1945;Parent=gene1980;Dbxref=Genbank:WP_010930830.1;Name=WP_010930830.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930830.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2053445 2055544 . + . ID=gene1981;Name=RD04_RS09910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09910;old_locus_tag=RD04_09895 NZ_CP010961.1 Protein Homology CDS 2053445 2055544 . + 0 ID=cds1946;Parent=gene1981;Dbxref=Genbank:WP_010930831.1;Name=WP_010930831.1;gbkey=CDS;product=EscV/YscV/HrcV family type III secretion system export apparatus protein;protein_id=WP_010930831.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2055541 2056821 . + . ID=gene1982;Name=RD04_RS09915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09915;old_locus_tag=RD04_09900 NZ_CP010961.1 Protein Homology CDS 2055541 2056821 . + 0 ID=cds1947;Parent=gene1982;Dbxref=Genbank:WP_010930832.1;Name=WP_010930832.1;gbkey=CDS;product=EscD/YscD/HrpQ family type III secretion system inner membrane ring protein;protein_id=WP_010930832.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2056862 2057161 . + . ID=gene1983;Name=RD04_RS09920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09920;old_locus_tag=RD04_09905 NZ_CP010961.1 Protein Homology CDS 2056862 2057161 . + 0 ID=cds1948;Parent=gene1983;Dbxref=Genbank:WP_003820040.1;Name=WP_003820040.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820040.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2057151 2057417 . + . ID=gene1984;Name=RD04_RS09925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09925;old_locus_tag=RD04_09910 NZ_CP010961.1 Protein Homology CDS 2057151 2057417 . + 0 ID=cds1949;Parent=gene1984;Dbxref=Genbank:WP_003809869.1;Name=WP_003809869.1;gbkey=CDS;product=type III secretion protein;protein_id=WP_003809869.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2057453 2057908 . - . ID=gene1985;Name=RD04_RS09930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09930;old_locus_tag=RD04_09915 NZ_CP010961.1 Protein Homology CDS 2057453 2057908 . - 0 ID=cds1950;Parent=gene1985;Dbxref=Genbank:WP_010930833.1;Name=WP_010930833.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930833.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2058252 2059202 . + . ID=gene1986;Name=RD04_RS09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09935;old_locus_tag=RD04_09920 NZ_CP010961.1 Protein Homology CDS 2058252 2059202 . + 0 ID=cds1951;Parent=gene1986;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2059504 2059980 . - . ID=gene1987;Name=RD04_RS09940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09940;old_locus_tag=RD04_09925 NZ_CP010961.1 Protein Homology CDS 2059504 2059980 . - 0 ID=cds1952;Parent=gene1987;Dbxref=Genbank:WP_003809615.1;Name=WP_003809615.1;gbkey=CDS;product=transcription elongation factor;protein_id=WP_003809615.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2060604 2062241 . + . ID=gene1988;Name=RD04_RS09945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09945;old_locus_tag=RD04_09930 NZ_CP010961.1 Protein Homology CDS 2060604 2062241 . + 0 ID=cds1953;Parent=gene1988;Dbxref=Genbank:WP_019247142.1;Name=WP_019247142.1;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_019247142.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2062272 2063585 . - . ID=gene1989;Name=RD04_RS09950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09950;old_locus_tag=RD04_09935 NZ_CP010961.1 Protein Homology CDS 2062272 2063585 . - 0 ID=cds1954;Parent=gene1989;Dbxref=Genbank:WP_003809610.1;Name=WP_003809610.1;gbkey=CDS;product=pyrimidine permease;protein_id=WP_003809610.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2063746 2064036 . + . ID=gene1990;Name=RD04_RS09955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09955;old_locus_tag=RD04_09940 NZ_CP010961.1 Protein Homology CDS 2063746 2064036 . + 0 ID=cds1955;Parent=gene1990;Dbxref=Genbank:WP_042145563.1;Name=WP_042145563.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_042145563.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2064137 2065459 . + . ID=gene1991;Name=RD04_RS09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09960;old_locus_tag=RD04_09945 NZ_CP010961.1 Protein Homology CDS 2064137 2065459 . + 0 ID=cds1956;Parent=gene1991;Dbxref=Genbank:WP_010930835.1;Name=WP_010930835.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930835.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2065456 2066358 . - . ID=gene1992;Name=RD04_RS09965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09965;old_locus_tag=RD04_09950 NZ_CP010961.1 GeneMarkS+ CDS 2065456 2066358 . - 0 ID=cds1957;Parent=gene1992;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2066488 2066871 . - . ID=gene1993;Name=RD04_RS09970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09970;old_locus_tag=RD04_09955 NZ_CP010961.1 GeneMarkS+ CDS 2066488 2066871 . - 0 ID=cds1958;Parent=gene1993;Dbxref=Genbank:WP_023853663.1;Name=WP_023853663.1;gbkey=CDS;product=tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA domain protein;protein_id=WP_023853663.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2066936 2067958 . - . ID=gene1994;Name=RD04_RS09975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09975;old_locus_tag=RD04_09960 NZ_CP010961.1 Protein Homology CDS 2066936 2067958 . - 0 ID=cds1959;Parent=gene1994;Dbxref=Genbank:WP_023997153.1;Name=WP_023997153.1;gbkey=CDS;product=putative 2-aminoethylphosphonate ABC transporter substrate-binding protein;protein_id=WP_023997153.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2067987 2068817 . - . ID=gene1995;Name=RD04_RS09980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09980;old_locus_tag=RD04_09965 NZ_CP010961.1 Protein Homology CDS 2067987 2068817 . - 0 ID=cds1960;Parent=gene1995;Dbxref=Genbank:WP_003820286.1;Name=WP_003820286.1;Note=catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate;gbkey=CDS;product=phosphonoacetaldehyde hydrolase;protein_id=WP_003820286.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2068834 2070531 . - . ID=gene1996;Name=RD04_RS09985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09985;old_locus_tag=RD04_09970 NZ_CP010961.1 Protein Homology CDS 2068834 2070531 . - 0 ID=cds1961;Parent=gene1996;Dbxref=Genbank:WP_029443740.1;Name=WP_029443740.1;gbkey=CDS;product=phosphonate ABC transporter permease;protein_id=WP_029443740.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2070596 2071672 . - . ID=gene1997;Name=RD04_RS09990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09990;old_locus_tag=RD04_09975 NZ_CP010961.1 Protein Homology CDS 2070596 2071672 . - 0 ID=cds1962;Parent=gene1997;Dbxref=Genbank:WP_010930838.1;Name=WP_010930838.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930838.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2071832 2072695 . + . ID=gene1998;Name=RD04_RS09995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS09995;old_locus_tag=RD04_09980 NZ_CP010961.1 Protein Homology CDS 2071832 2072695 . + 0 ID=cds1963;Parent=gene1998;Dbxref=Genbank:WP_010930839.1;Name=WP_010930839.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010930839.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2072726 2073295 . + . ID=gene1999;Name=RD04_RS10000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10000;old_locus_tag=RD04_09985 NZ_CP010961.1 Protein Homology CDS 2072726 2073295 . + 0 ID=cds1964;Parent=gene1999;Dbxref=Genbank:WP_010930840.1;Name=WP_010930840.1;gbkey=CDS;product=phosphohydrolase;protein_id=WP_010930840.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2073312 2074163 . - . ID=gene2000;Name=RD04_RS10005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10005;old_locus_tag=RD04_09990 NZ_CP010961.1 Protein Homology CDS 2073312 2074163 . - 0 ID=cds1965;Parent=gene2000;Dbxref=Genbank:WP_010930841.1;Name=WP_010930841.1;gbkey=CDS;product=3-mercaptopyruvate sulfurtransferase;protein_id=WP_010930841.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2074216 2075067 . - . ID=gene2001;Name=RD04_RS10010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS10010;old_locus_tag=RD04_09995;pseudo=true NZ_CP010961.1 Protein Homology CDS 2074216 2075067 . - 0 ID=cds1966;Parent=gene2001;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2075221 2076102 . + . ID=gene2002;Name=RD04_RS10015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10015;old_locus_tag=RD04_10000 NZ_CP010961.1 Protein Homology CDS 2075221 2076102 . + 0 ID=cds1967;Parent=gene2002;Dbxref=Genbank:WP_003813142.1;Name=WP_003813142.1;gbkey=CDS;product=protease HtpX homolog;protein_id=WP_003813142.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2076177 2077166 . - . ID=gene2003;Name=RD04_RS10020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10020;old_locus_tag=RD04_10005 NZ_CP010961.1 Protein Homology CDS 2076177 2077166 . - 0 ID=cds1968;Parent=gene2003;Dbxref=Genbank:WP_010930842.1;Name=WP_010930842.1;gbkey=CDS;product=quinone oxidoreductase;protein_id=WP_010930842.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2077229 2078179 . - . ID=gene2004;Name=RD04_RS10025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10025;old_locus_tag=RD04_10010 NZ_CP010961.1 Protein Homology CDS 2077229 2078179 . - 0 ID=cds1969;Parent=gene2004;Dbxref=Genbank:WP_010930843.1;Name=WP_010930843.1;gbkey=CDS;product=multidrug DMT transporter permease;protein_id=WP_010930843.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2078242 2079099 . + . ID=gene2005;Name=RD04_RS10030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10030;old_locus_tag=RD04_10015 NZ_CP010961.1 Protein Homology CDS 2078242 2079099 . + 0 ID=cds1970;Parent=gene2005;Dbxref=Genbank:WP_003813147.1;Name=WP_003813147.1;gbkey=CDS;product=membrane protein;protein_id=WP_003813147.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2079159 2079647 . + . ID=gene2006;Name=RD04_RS10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10035;old_locus_tag=RD04_10020 NZ_CP010961.1 Protein Homology CDS 2079159 2079647 . + 0 ID=cds1971;Parent=gene2006;Dbxref=Genbank:WP_003813149.1;Name=WP_003813149.1;gbkey=CDS;product=MarR family transcriptional regulator;protein_id=WP_003813149.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2079771 2081199 . + . ID=gene2007;Name=RD04_RS10040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS10040;old_locus_tag=RD04_10025;pseudo=true NZ_CP010961.1 Protein Homology CDS 2079771 2081199 . + 0 ID=cds1972;Parent=gene2007;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2081220 2082410 . + . ID=gene2008;Name=RD04_RS10045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10045;old_locus_tag=RD04_10030 NZ_CP010961.1 Protein Homology CDS 2081220 2082410 . + 0 ID=cds1973;Parent=gene2008;Dbxref=Genbank:WP_010930844.1;Name=WP_010930844.1;gbkey=CDS;product=multidrug resistance protein;protein_id=WP_010930844.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2082407 2083993 . + . ID=gene2009;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=RD04_RS10050;old_locus_tag=RD04_10035 NZ_CP010961.1 Protein Homology CDS 2082407 2083993 . + 0 ID=cds1974;Parent=gene2009;Dbxref=Genbank:WP_010930845.1;Name=WP_010930845.1;Note=multidrug MFS transporte%3B with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid;gbkey=CDS;gene=emrB;product=multidrug resistance protein;protein_id=WP_010930845.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2084012 2085079 . - . ID=gene2010;Name=RD04_RS10055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10055;old_locus_tag=RD04_10040 NZ_CP010961.1 Protein Homology CDS 2084012 2085079 . - 0 ID=cds1975;Parent=gene2010;Dbxref=Genbank:WP_010930846.1;Name=WP_010930846.1;gbkey=CDS;product=tartrate dehydrogenase;protein_id=WP_010930846.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2085184 2086713 . - . ID=gene2011;Name=RD04_RS10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10060;old_locus_tag=RD04_10045 NZ_CP010961.1 Protein Homology CDS 2085184 2086713 . - 0 ID=cds1976;Parent=gene2011;Dbxref=Genbank:WP_033446174.1;Name=WP_033446174.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_033446174.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2087148 2088722 . + . ID=gene2012;Name=RD04_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10065;old_locus_tag=RD04_10050 NZ_CP010961.1 Protein Homology CDS 2087148 2088722 . + 0 ID=cds1977;Parent=gene2012;Dbxref=Genbank:WP_010930848.1;Name=WP_010930848.1;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_010930848.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2088830 2089846 . + . ID=gene2013;Name=RD04_RS10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10070;old_locus_tag=RD04_10055 NZ_CP010961.1 Protein Homology CDS 2088830 2089846 . + 0 ID=cds1978;Parent=gene2013;Dbxref=Genbank:WP_010930849.1;Name=WP_010930849.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010930849.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2089843 2090682 . + . ID=gene2014;Name=RD04_RS10075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10075;old_locus_tag=RD04_10060 NZ_CP010961.1 Protein Homology CDS 2089843 2090682 . + 0 ID=cds1979;Parent=gene2014;Dbxref=Genbank:WP_003813165.1;Name=WP_003813165.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003813165.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2090693 2092324 . + . ID=gene2015;Name=RD04_RS10080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10080;old_locus_tag=RD04_10065 NZ_CP010961.1 Protein Homology CDS 2090693 2092324 . + 0 ID=cds1980;Parent=gene2015;Dbxref=Genbank:WP_033446173.1;Name=WP_033446173.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_033446173.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2092321 2093223 . - . ID=gene2016;Name=RD04_RS10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10085;old_locus_tag=RD04_10070 NZ_CP010961.1 GeneMarkS+ CDS 2092321 2093223 . - 0 ID=cds1981;Parent=gene2016;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2093414 2094688 . + . ID=gene2017;Name=RD04_RS10090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10090;old_locus_tag=RD04_10075 NZ_CP010961.1 Protein Homology CDS 2093414 2094688 . + 0 ID=cds1982;Parent=gene2017;Dbxref=Genbank:WP_010930851.1;Name=WP_010930851.1;Note=catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate;gbkey=CDS;product=4-aminobutyrate transaminase;protein_id=WP_010930851.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2094718 2095008 . + . ID=gene2018;Name=RD04_RS10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10095;old_locus_tag=RD04_10080 NZ_CP010961.1 Protein Homology CDS 2094718 2095008 . + 0 ID=cds1983;Parent=gene2018;Dbxref=Genbank:WP_010930852.1;Name=WP_010930852.1;gbkey=CDS;product=cupin;protein_id=WP_010930852.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2095081 2096094 . + . ID=gene2019;Name=RD04_RS10100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10100;old_locus_tag=RD04_10085 NZ_CP010961.1 Protein Homology CDS 2095081 2096094 . + 0 ID=cds1984;Parent=gene2019;Dbxref=Genbank:WP_047122810.1;Name=WP_047122810.1;gbkey=CDS;product=acetylpolyamine aminohydrolase;protein_id=WP_047122810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2096114 2097376 . + . ID=gene2020;Name=RD04_RS10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10105;old_locus_tag=RD04_10090 NZ_CP010961.1 Protein Homology CDS 2096114 2097376 . + 0 ID=cds1985;Parent=gene2020;Dbxref=Genbank:WP_010930854.1;Name=WP_010930854.1;gbkey=CDS;product=Zn-dependent hydrolase;protein_id=WP_010930854.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2097379 2098302 . + . ID=gene2021;Name=RD04_RS10110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10110;old_locus_tag=RD04_10095 NZ_CP010961.1 Protein Homology CDS 2097379 2098302 . + 0 ID=cds1986;Parent=gene2021;Dbxref=Genbank:WP_010930855.1;Name=WP_010930855.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930855.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2098299 2099792 . + . ID=gene2022;Name=RD04_RS10115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10115;old_locus_tag=RD04_10100 NZ_CP010961.1 Protein Homology CDS 2098299 2099792 . + 0 ID=cds1987;Parent=gene2022;Dbxref=Genbank:WP_010930856.1;Name=WP_010930856.1;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_010930856.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2099803 2100735 . - . ID=gene2023;Name=RD04_RS10120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10120;old_locus_tag=RD04_10105 NZ_CP010961.1 Protein Homology CDS 2099803 2100735 . - 0 ID=cds1988;Parent=gene2023;Dbxref=Genbank:WP_010930857.1;Name=WP_010930857.1;gbkey=CDS;product=glyoxylate/hydroxypyruvate reductase A;protein_id=WP_010930857.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2100953 2102242 . + . ID=gene2024;Name=RD04_RS10125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10125;old_locus_tag=RD04_10110 NZ_CP010961.1 Protein Homology CDS 2100953 2102242 . + 0 ID=cds1989;Parent=gene2024;Dbxref=Genbank:WP_010930858.1;Name=WP_010930858.1;gbkey=CDS;product=aminotransferase;protein_id=WP_010930858.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2102277 2103620 . - . ID=gene2025;Name=RD04_RS10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10130;old_locus_tag=RD04_10115 NZ_CP010961.1 Protein Homology CDS 2102277 2103620 . - 0 ID=cds1990;Parent=gene2025;Dbxref=Genbank:WP_023853659.1;Name=WP_023853659.1;gbkey=CDS;product=amino acid carrier protein;protein_id=WP_023853659.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2103693 2105213 . - . ID=gene2026;Name=RD04_RS10135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10135;old_locus_tag=RD04_10120 NZ_CP010961.1 Protein Homology CDS 2103693 2105213 . - 0 ID=cds1991;Parent=gene2026;Dbxref=Genbank:WP_023853666.1;Name=WP_023853666.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853666.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2105368 2106099 . + . ID=gene2027;Name=RD04_RS10140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10140;old_locus_tag=RD04_10125 NZ_CP010961.1 Protein Homology CDS 2105368 2106099 . + 0 ID=cds1992;Parent=gene2027;Dbxref=Genbank:WP_010930861.1;Name=WP_010930861.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010930861.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2106197 2107507 . + . ID=gene2028;Name=RD04_RS10145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10145;old_locus_tag=RD04_10130 NZ_CP010961.1 Protein Homology CDS 2106197 2107507 . + 0 ID=cds1993;Parent=gene2028;Dbxref=Genbank:WP_023853662.1;Name=WP_023853662.1;Note=catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis;gbkey=CDS;product=phosphoribosylamine--glycine ligase;protein_id=WP_023853662.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2107523 2108434 . + . ID=gene2029;Name=RD04_RS10150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10150;old_locus_tag=RD04_10135 NZ_CP010961.1 Protein Homology CDS 2107523 2108434 . + 0 ID=cds1994;Parent=gene2029;Dbxref=Genbank:WP_010930863.1;Name=WP_010930863.1;Note=catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_010930863.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2108431 2109018 . + . ID=gene2030;Name=RD04_RS10155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10155;old_locus_tag=RD04_10140 NZ_CP010961.1 Protein Homology CDS 2108431 2109018 . + 0 ID=cds1995;Parent=gene2030;Dbxref=Genbank:WP_003820260.1;Name=WP_003820260.1;gbkey=CDS;product=nicotinate-nicotinamide nucleotide adenylyltransferase;protein_id=WP_003820260.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2109080 2109466 . + . ID=gene2031;Name=RD04_RS10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10160;old_locus_tag=RD04_10145 NZ_CP010961.1 Protein Homology CDS 2109080 2109466 . + 0 ID=cds1996;Parent=gene2031;Dbxref=Genbank:WP_003813196.1;Name=WP_003813196.1;gbkey=CDS;product=ribosome silencing factor RsfS;protein_id=WP_003813196.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2109478 2109948 . + . ID=gene2032;Name=RD04_RS10165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10165;old_locus_tag=RD04_10150 NZ_CP010961.1 Protein Homology CDS 2109478 2109948 . + 0 ID=cds1997;Parent=gene2032;Dbxref=Genbank:WP_003813199.1;Name=WP_003813199.1;gbkey=CDS;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=WP_003813199.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2109960 2110583 . + . ID=gene2033;Name=RD04_RS10170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10170;old_locus_tag=RD04_10155 NZ_CP010961.1 Protein Homology CDS 2109960 2110583 . + 0 ID=cds1998;Parent=gene2033;Dbxref=Genbank:WP_010930865.1;Name=WP_010930865.1;Note=Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell;gbkey=CDS;product=septum formation inhibitor Maf;protein_id=WP_010930865.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2110604 2113351 . - . ID=gene2034;Name=RD04_RS10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10175;old_locus_tag=RD04_10160 NZ_CP010961.1 Protein Homology CDS 2110604 2113351 . - 0 ID=cds1999;Parent=gene2034;Dbxref=Genbank:WP_010930866.1;Name=WP_010930866.1;gbkey=CDS;product=autotransporter;protein_id=WP_010930866.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2113742 2113854 . - . ID=gene2035;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=RD04_RS10180;old_locus_tag=RD04_10165 NZ_CP010961.1 cmsearch rRNA 2113742 2113854 . - . ID=rna35;Parent=gene2035;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;product=5S ribosomal RNA NZ_CP010961.1 cmsearch exon 2113742 2113854 . - . ID=id40;Parent=rna35;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;product=5S ribosomal RNA NZ_CP010961.1 RefSeq gene 2114018 2116918 . - . ID=gene2036;Name=RD04_RS10185;gbkey=Gene;gene_biotype=rRNA;locus_tag=RD04_RS10185;old_locus_tag=RD04_10170 NZ_CP010961.1 RefSeq rRNA 2114018 2116918 . - . ID=rna36;Parent=gene2036;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010961.1 RefSeq exon 2114018 2116918 . - . ID=id41;Parent=rna36;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010961.1 RefSeq gene 2117226 2117301 . - . ID=gene2037;Name=RD04_RS10190;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS10190;old_locus_tag=RD04_10175 NZ_CP010961.1 tRNAscan-SE tRNA 2117226 2117301 . - . ID=rna37;Parent=gene2037;anticodon=(pos:complement(2117266..2117268));gbkey=tRNA;product=tRNA-Ala NZ_CP010961.1 tRNAscan-SE exon 2117226 2117301 . - . ID=id42;Parent=rna37;anticodon=(pos:complement(2117266..2117268));gbkey=tRNA;product=tRNA-Ala NZ_CP010961.1 RefSeq gene 2117322 2117398 . - . ID=gene2038;Name=RD04_RS10195;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS10195;old_locus_tag=RD04_10180 NZ_CP010961.1 tRNAscan-SE tRNA 2117322 2117398 . - . ID=rna38;Parent=gene2038;anticodon=(pos:complement(2117362..2117364));gbkey=tRNA;product=tRNA-Ile NZ_CP010961.1 tRNAscan-SE exon 2117322 2117398 . - . ID=id43;Parent=rna38;anticodon=(pos:complement(2117362..2117364));gbkey=tRNA;product=tRNA-Ile NZ_CP010961.1 RefSeq gene 2117492 2119033 . - . ID=gene2039;Name=RD04_RS10200;gbkey=Gene;gene_biotype=rRNA;locus_tag=RD04_RS10200;old_locus_tag=RD04_10185 NZ_CP010961.1 RefSeq rRNA 2117492 2119033 . - . ID=rna39;Parent=gene2039;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010961.1 RefSeq exon 2117492 2119033 . - . ID=id44;Parent=rna39;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010961.1 RefSeq gene 2119628 2119843 . + . ID=gene2040;Name=RD04_RS10205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10205 NZ_CP010961.1 Protein Homology CDS 2119628 2119843 . + 0 ID=cds2000;Parent=gene2040;Dbxref=Genbank:WP_062826645.1;Name=WP_062826645.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_062826645.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2119830 2120780 . + . ID=gene2041;Name=RD04_RS10210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10210;old_locus_tag=RD04_10190 NZ_CP010961.1 Protein Homology CDS 2119830 2120780 . + 0 ID=cds2001;Parent=gene2041;Dbxref=Genbank:WP_062826646.1;Name=WP_062826646.1;gbkey=CDS;product=integrase;protein_id=WP_062826646.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2120824 2122287 . + . ID=gene2042;Name=RD04_RS10215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10215;old_locus_tag=RD04_10195 NZ_CP010961.1 Protein Homology CDS 2120824 2122287 . + 0 ID=cds2002;Parent=gene2042;Dbxref=Genbank:WP_010930867.1;Name=WP_010930867.1;gbkey=CDS;product=ribonuclease;protein_id=WP_010930867.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2122321 2123223 . - . ID=gene2043;Name=RD04_RS10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10220;old_locus_tag=RD04_10200 NZ_CP010961.1 Protein Homology CDS 2122321 2123223 . - 0 ID=cds2003;Parent=gene2043;Dbxref=Genbank:WP_010930868.1;Name=WP_010930868.1;gbkey=CDS;product=prephenate dehydratase;protein_id=WP_010930868.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2123220 2123765 . - . ID=gene2044;Name=RD04_RS10225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10225;old_locus_tag=RD04_10205 NZ_CP010961.1 Protein Homology CDS 2123220 2123765 . - 0 ID=cds2004;Parent=gene2044;Dbxref=Genbank:WP_003813206.1;Name=WP_003813206.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003813206.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2123849 2125348 . + . ID=gene2045;Name=RD04_RS10230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10230;old_locus_tag=RD04_10210 NZ_CP010961.1 Protein Homology CDS 2123849 2125348 . + 0 ID=cds2005;Parent=gene2045;Dbxref=Genbank:WP_010930869.1;Name=WP_010930869.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010930869.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2125321 2127096 . - . ID=gene2046;Name=RD04_RS10235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10235;old_locus_tag=RD04_10215 NZ_CP010961.1 Protein Homology CDS 2125321 2127096 . - 0 ID=cds2006;Parent=gene2046;Dbxref=Genbank:WP_003813209.1;Name=WP_003813209.1;Note=involved in the transport of lipid A across the inner membrane;gbkey=CDS;product=lipid A export permease/ATP-binding protein MsbA;protein_id=WP_003813209.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2127208 2128173 . + . ID=gene2047;Name=RD04_RS10240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10240;old_locus_tag=RD04_10220 NZ_CP010961.1 Protein Homology CDS 2127208 2128173 . + 0 ID=cds2007;Parent=gene2047;Dbxref=Genbank:WP_010926806.1;Name=WP_010926806.1;gbkey=CDS;product=heptosyltransferase II;protein_id=WP_010926806.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2128186 2128950 . + . ID=gene2048;Name=RD04_RS10245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10245;old_locus_tag=RD04_10225 NZ_CP010961.1 Protein Homology CDS 2128186 2128950 . + 0 ID=cds2008;Parent=gene2048;Dbxref=Genbank:WP_010930871.1;Name=WP_010930871.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930871.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2128955 2129227 . + . ID=gene2049;Name=RD04_RS10250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10250;old_locus_tag=RD04_10230 NZ_CP010961.1 Protein Homology CDS 2128955 2129227 . + 0 ID=cds2009;Parent=gene2049;Dbxref=Genbank:WP_003813217.1;Name=WP_003813217.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813217.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2129352 2130506 . - . ID=gene2050;Name=RD04_RS10255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10255;old_locus_tag=RD04_10235 NZ_CP010961.1 Protein Homology CDS 2129352 2130506 . - 0 ID=cds2010;Parent=gene2050;Dbxref=Genbank:WP_019247284.1;Name=WP_019247284.1;gbkey=CDS;product=transferase;protein_id=WP_019247284.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2130481 2131188 . - . ID=gene2051;Name=RD04_RS10260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10260;old_locus_tag=RD04_10240 NZ_CP010961.1 Protein Homology CDS 2130481 2131188 . - 0 ID=cds2011;Parent=gene2051;Dbxref=Genbank:WP_033446280.1;Name=WP_033446280.1;gbkey=CDS;product=polysaccharide deacetylase;protein_id=WP_033446280.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2131568 2133184 . + . ID=gene2052;Name=RD04_RS10265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10265;old_locus_tag=RD04_10245 NZ_CP010961.1 Protein Homology CDS 2131568 2133184 . + 0 ID=cds2012;Parent=gene2052;Dbxref=Genbank:WP_023997150.1;Name=WP_023997150.1;gbkey=CDS;product=arylsulfatase;protein_id=WP_023997150.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2133163 2134275 . - . ID=gene2053;Name=RD04_RS10270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10270;old_locus_tag=RD04_10250 NZ_CP010961.1 Protein Homology CDS 2133163 2134275 . - 0 ID=cds2013;Parent=gene2053;Dbxref=Genbank:WP_010930874.1;Name=WP_010930874.1;gbkey=CDS;product=transferase;protein_id=WP_010930874.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2134272 2135024 . - . ID=gene2054;Name=RD04_RS10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10275;old_locus_tag=RD04_10255 NZ_CP010961.1 Protein Homology CDS 2134272 2135024 . - 0 ID=cds2014;Parent=gene2054;Dbxref=Genbank:WP_003813226.1;Name=WP_003813226.1;gbkey=CDS;product=glycosyl transferase family 2;protein_id=WP_003813226.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2135021 2135872 . - . ID=gene2055;Name=RD04_RS10280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10280;old_locus_tag=RD04_10260 NZ_CP010961.1 Protein Homology CDS 2135021 2135872 . - 0 ID=cds2015;Parent=gene2055;Dbxref=Genbank:WP_010930875.1;Name=WP_010930875.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930875.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2135865 2136968 . - . ID=gene2056;Name=RD04_RS10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10285;old_locus_tag=RD04_10265 NZ_CP010961.1 Protein Homology CDS 2135865 2136968 . - 0 ID=cds2016;Parent=gene2056;Dbxref=Genbank:WP_010930876.1;Name=WP_010930876.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_010930876.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2136968 2140459 . - . ID=gene2057;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=RD04_RS10290;old_locus_tag=RD04_10270 NZ_CP010961.1 Protein Homology CDS 2136968 2140459 . - 0 ID=cds2017;Parent=gene2057;Dbxref=Genbank:WP_010930877.1;Name=WP_010930877.1;Note=catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time%3B main replicative polymerase;gbkey=CDS;gene=dnaE;product=DNA polymerase III subunit alpha;protein_id=WP_010930877.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2140597 2141496 . + . ID=gene2058;Name=RD04_RS10295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10295;old_locus_tag=RD04_10275 NZ_CP010961.1 Protein Homology CDS 2140597 2141496 . + 0 ID=cds2018;Parent=gene2058;Dbxref=Genbank:WP_023995005.1;Name=WP_023995005.1;gbkey=CDS;product=beta-hydroxylase aspartyl/asparaginyl family;protein_id=WP_023995005.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2141628 2145512 . - . ID=gene2059;Name=RD04_RS10300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10300;old_locus_tag=RD04_10280 NZ_CP010961.1 Protein Homology CDS 2141628 2145512 . - 0 ID=cds2019;Parent=gene2059;Dbxref=Genbank:WP_019247285.1;Name=WP_019247285.1;gbkey=CDS;product=ATP-dependent helicase;protein_id=WP_019247285.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2145693 2147048 . + . ID=gene2060;Name=RD04_RS10305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10305;old_locus_tag=RD04_10285 NZ_CP010961.1 Protein Homology CDS 2145693 2147048 . + 0 ID=cds2020;Parent=gene2060;Dbxref=Genbank:WP_023853448.1;Name=WP_023853448.1;gbkey=CDS;product=N-acetylglutamate synthase;protein_id=WP_023853448.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2147122 2147394 . + . ID=gene2061;Name=RD04_RS10310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10310;old_locus_tag=RD04_10290 NZ_CP010961.1 Protein Homology CDS 2147122 2147394 . + 0 ID=cds2021;Parent=gene2061;Dbxref=Genbank:WP_003813239.1;Name=WP_003813239.1;gbkey=CDS;product=Fe(2+)-trafficking protein;protein_id=WP_003813239.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2147448 2149328 . + . ID=gene2062;Name=RD04_RS10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10315;old_locus_tag=RD04_10295 NZ_CP010961.1 Protein Homology CDS 2147448 2149328 . + 0 ID=cds2022;Parent=gene2062;Dbxref=Genbank:WP_010930880.1;Name=WP_010930880.1;gbkey=CDS;product=phospholipase;protein_id=WP_010930880.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2149342 2150121 . - . ID=gene2063;Name=RD04_RS10320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10320;old_locus_tag=RD04_10300 NZ_CP010961.1 Protein Homology CDS 2149342 2150121 . - 0 ID=cds2023;Parent=gene2063;Dbxref=Genbank:WP_023853444.1;Name=WP_023853444.1;Note=regulates several genes involved in high affinity phosphate uptake%3B under conditions of high phosphate concentrations downregulates the PHO regulon;gbkey=CDS;product=phosphate transport system regulatory protein PhoU;protein_id=WP_023853444.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2150276 2150956 . - . ID=gene2064;Name=RD04_RS10325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10325;old_locus_tag=RD04_10305 NZ_CP010961.1 Protein Homology CDS 2150276 2150956 . - 0 ID=cds2024;Parent=gene2064;Dbxref=Genbank:WP_010930882.1;Name=WP_010930882.1;gbkey=CDS;product=ribose-5-phosphate isomerase;protein_id=WP_010930882.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2151010 2152668 . - . ID=gene2065;Name=RD04_RS10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10330;old_locus_tag=RD04_10310 NZ_CP010961.1 Protein Homology CDS 2151010 2152668 . - 0 ID=cds2025;Parent=gene2065;Dbxref=Genbank:WP_010930883.1;Name=WP_010930883.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_010930883.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2152748 2154163 . - . ID=gene2066;Name=RD04_RS10335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10335;old_locus_tag=RD04_10315 NZ_CP010961.1 Protein Homology CDS 2152748 2154163 . - 0 ID=cds2026;Parent=gene2066;Dbxref=Genbank:WP_003813247.1;Name=WP_003813247.1;gbkey=CDS;product=DNA recombination protein RmuC;protein_id=WP_003813247.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2154289 2154948 . + . ID=gene2067;Name=RD04_RS10340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10340;old_locus_tag=RD04_10320 NZ_CP010961.1 Protein Homology CDS 2154289 2154948 . + 0 ID=cds2027;Parent=gene2067;Dbxref=Genbank:WP_010930885.1;Name=WP_010930885.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930885.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2154956 2155672 . - . ID=gene2068;Name=RD04_RS10345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10345;old_locus_tag=RD04_10325 NZ_CP010961.1 Protein Homology CDS 2154956 2155672 . - 0 ID=cds2028;Parent=gene2068;Dbxref=Genbank:WP_010930886.1;Name=WP_010930886.1;gbkey=CDS;product=3-methyladenine DNA glycosylase;protein_id=WP_010930886.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2155677 2156033 . - . ID=gene2069;Name=RD04_RS10350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10350;old_locus_tag=RD04_10330 NZ_CP010961.1 Protein Homology CDS 2155677 2156033 . - 0 ID=cds2029;Parent=gene2069;Dbxref=Genbank:WP_003813253.1;Name=WP_003813253.1;gbkey=CDS;product=arsenate reductase;protein_id=WP_003813253.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2156030 2156839 . - . ID=gene2070;Name=RD04_RS10355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10355;old_locus_tag=RD04_10335 NZ_CP010961.1 Protein Homology CDS 2156030 2156839 . - 0 ID=cds2030;Parent=gene2070;Dbxref=Genbank:WP_003813256.1;Name=WP_003813256.1;gbkey=CDS;product=putrescine/spermidine ABC transporter permease;protein_id=WP_003813256.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2156836 2157750 . - . ID=gene2071;Name=RD04_RS10360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10360;old_locus_tag=RD04_10340 NZ_CP010961.1 Protein Homology CDS 2156836 2157750 . - 0 ID=cds2031;Parent=gene2071;Dbxref=Genbank:WP_003813258.1;Name=WP_003813258.1;gbkey=CDS;product=putrescine/spermidine ABC transporter permease;protein_id=WP_003813258.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2157747 2158874 . - . ID=gene2072;Name=RD04_RS10365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10365;old_locus_tag=RD04_10345 NZ_CP010961.1 Protein Homology CDS 2157747 2158874 . - 0 ID=cds2032;Parent=gene2072;Dbxref=Genbank:WP_003813260.1;Name=WP_003813260.1;gbkey=CDS;product=putrescine/spermidine ABC transporter ATP-binding protein;protein_id=WP_003813260.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2158881 2159984 . - . ID=gene2073;Name=RD04_RS10370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10370;old_locus_tag=RD04_10350 NZ_CP010961.1 Protein Homology CDS 2158881 2159984 . - 0 ID=cds2033;Parent=gene2073;Dbxref=Genbank:WP_010930887.1;Name=WP_010930887.1;gbkey=CDS;product=putrescine ABC transporter substrate-binding protein;protein_id=WP_010930887.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2160116 2160850 . - . ID=gene2074;Name=RD04_RS10375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10375;old_locus_tag=RD04_10355 NZ_CP010961.1 Protein Homology CDS 2160116 2160850 . - 0 ID=cds2034;Parent=gene2074;Dbxref=Genbank:WP_010930888.1;Name=WP_010930888.1;gbkey=CDS;product=3-deoxy-D-manno-octulosonic acid kinase;protein_id=WP_010930888.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2160840 2161265 . - . ID=gene2075;Name=RD04_RS10380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10380;old_locus_tag=RD04_10360 NZ_CP010961.1 Protein Homology CDS 2160840 2161265 . - 0 ID=cds2035;Parent=gene2075;Dbxref=Genbank:WP_003813267.1;Name=WP_003813267.1;gbkey=CDS;product=globin-like protein;protein_id=WP_003813267.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2161265 2163736 . - . ID=gene2076;Name=RD04_RS10385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10385;old_locus_tag=RD04_10365 NZ_CP010961.1 Protein Homology CDS 2161265 2163736 . - 0 ID=cds2036;Parent=gene2076;Dbxref=Genbank:WP_047122811.1;Name=WP_047122811.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_047122811.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2163923 2164897 . + . ID=gene2077;Name=RD04_RS10390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10390;old_locus_tag=RD04_10370 NZ_CP010961.1 Protein Homology CDS 2163923 2164897 . + 0 ID=cds2037;Parent=gene2077;Dbxref=Genbank:WP_010930890.1;Name=WP_010930890.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter substrate-binding protein;protein_id=WP_010930890.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2164983 2165483 . + . ID=gene2078;Name=RD04_RS10395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10395;old_locus_tag=RD04_10375 NZ_CP010961.1 Protein Homology CDS 2164983 2165483 . + 0 ID=cds2038;Parent=gene2078;Dbxref=Genbank:WP_010930891.1;Name=WP_010930891.1;gbkey=CDS;product=transporter;protein_id=WP_010930891.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2165524 2166801 . + . ID=gene2079;Name=RD04_RS10400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10400;old_locus_tag=RD04_10380 NZ_CP010961.1 Protein Homology CDS 2165524 2166801 . + 0 ID=cds2039;Parent=gene2079;Dbxref=Genbank:WP_010926811.1;Name=WP_010926811.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter permease;protein_id=WP_010926811.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2166900 2167850 . + . ID=gene2080;Name=RD04_RS10405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10405;old_locus_tag=RD04_10385 NZ_CP010961.1 Protein Homology CDS 2166900 2167850 . + 0 ID=cds2040;Parent=gene2080;Dbxref=Genbank:WP_005015810.1;Name=WP_005015810.1;gbkey=CDS;product=transposase;protein_id=WP_005015810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2167866 2168504 . - . ID=gene2081;Name=RD04_RS10410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10410;old_locus_tag=RD04_10390 NZ_CP010961.1 Protein Homology CDS 2167866 2168504 . - 0 ID=cds2041;Parent=gene2081;Dbxref=Genbank:WP_019247718.1;Name=WP_019247718.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247718.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2168482 2169018 . - . ID=gene2082;Name=RD04_RS10415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10415;old_locus_tag=RD04_10395 NZ_CP010961.1 Protein Homology CDS 2168482 2169018 . - 0 ID=cds2042;Parent=gene2082;Dbxref=Genbank:WP_019247719.1;Name=WP_019247719.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247719.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2169068 2170378 . - . ID=gene2083;Name=gltA;gbkey=Gene;gene=gltA;gene_biotype=protein_coding;locus_tag=RD04_RS10420;old_locus_tag=RD04_10400 NZ_CP010961.1 Protein Homology CDS 2169068 2170378 . - 0 ID=cds2043;Parent=gene2083;Dbxref=Genbank:WP_003813645.1;Name=WP_003813645.1;Note=type II enzyme%3B in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate%3B allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation%3B forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A%3B functions in TCA cycle%2C glyoxylate cycle and respiration%3B enzyme from Helicobacter pylori is not inhibited by NADH;gbkey=CDS;gene=gltA;product=type II citrate synthase;protein_id=WP_003813645.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2170399 2170659 . - . ID=gene2084;Name=RD04_RS10425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10425;old_locus_tag=RD04_10405 NZ_CP010961.1 Protein Homology CDS 2170399 2170659 . - 0 ID=cds2044;Parent=gene2084;Dbxref=Genbank:WP_003813647.1;Name=WP_003813647.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813647.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2170685 2171401 . - . ID=gene2085;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=RD04_RS10430;old_locus_tag=RD04_10410 NZ_CP010961.1 Protein Homology CDS 2170685 2171401 . - 0 ID=cds2045;Parent=gene2085;Dbxref=Genbank:WP_003813649.1;Name=WP_003813649.1;Note=part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol%3B the catalytic subunits are similar to fumarate reductase;gbkey=CDS;gene=sdhB;product=succinate dehydrogenase iron-sulfur subunit;protein_id=WP_003813649.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2171414 2173192 . - . ID=gene2086;Name=RD04_RS10435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10435;old_locus_tag=RD04_10415 NZ_CP010961.1 Protein Homology CDS 2171414 2173192 . - 0 ID=cds2046;Parent=gene2086;Dbxref=Genbank:WP_003813651.1;Name=WP_003813651.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_003813651.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2173196 2173579 . - . ID=gene2087;Name=RD04_RS10440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10440;old_locus_tag=RD04_10420 NZ_CP010961.1 Protein Homology CDS 2173196 2173579 . - 0 ID=cds2047;Parent=gene2087;Dbxref=Genbank:WP_003813653.1;Name=WP_003813653.1;gbkey=CDS;product=succinate dehydrogenase%2C hydrophobic membrane anchor protein;protein_id=WP_003813653.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2173579 2173992 . - . ID=gene2088;Name=RD04_RS10445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10445;old_locus_tag=RD04_10425 NZ_CP010961.1 Protein Homology CDS 2173579 2173992 . - 0 ID=cds2048;Parent=gene2088;Dbxref=Genbank:WP_003813654.1;Name=WP_003813654.1;gbkey=CDS;product=succinate dehydrogenase%2C cytochrome b556 subunit;protein_id=WP_003813654.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2174117 2174896 . - . ID=gene2089;Name=RD04_RS10450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10450;old_locus_tag=RD04_10430 NZ_CP010961.1 Protein Homology CDS 2174117 2174896 . - 0 ID=cds2049;Parent=gene2089;Dbxref=Genbank:WP_003813656.1;Name=WP_003813656.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_003813656.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2175185 2176174 . + . ID=gene2090;Name=RD04_RS10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10455;old_locus_tag=RD04_10435 NZ_CP010961.1 Protein Homology CDS 2175185 2176174 . + 0 ID=cds2050;Parent=gene2090;Dbxref=Genbank:WP_003813657.1;Name=WP_003813657.1;Note=catalyzes the oxidation of malate to oxaloacetate;gbkey=CDS;product=malate dehydrogenase;protein_id=WP_003813657.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2176436 2177331 . + . ID=gene2091;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=pseudogene;locus_tag=RD04_RS10460;old_locus_tag=RD04_10440;pseudo=true NZ_CP010961.1 Protein Homology CDS 2176436 2177331 . + 0 ID=cds2051;Parent=gene2091;Note=catalyzes the formation of pyruvate and succinate from 2-methylisocitrate%3B frameshifted;gbkey=CDS;gene=prpB;product=methylisocitrate lyase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2177405 2178607 . + . ID=gene2092;Name=RD04_RS10465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10465;old_locus_tag=RD04_10445 NZ_CP010961.1 Protein Homology CDS 2177405 2178607 . + 0 ID=cds2052;Parent=gene2092;Dbxref=Genbank:WP_003821414.1;Name=WP_003821414.1;Note=catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate%3B also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity;gbkey=CDS;product=2-methylcitrate synthase;protein_id=WP_003821414.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2178725 2181319 . + . ID=gene2093;Name=RD04_RS10470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10470;old_locus_tag=RD04_10450 NZ_CP010961.1 Protein Homology CDS 2178725 2181319 . + 0 ID=cds2053;Parent=gene2093;Dbxref=Genbank:WP_010930895.1;Name=WP_010930895.1;gbkey=CDS;product=Fe/S-dependent 2-methylisocitrate dehydratase AcnD;protein_id=WP_010930895.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2181376 2182566 . + . ID=gene2094;Name=RD04_RS10475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10475;old_locus_tag=RD04_10455 NZ_CP010961.1 Protein Homology CDS 2181376 2182566 . + 0 ID=cds2054;Parent=gene2094;Dbxref=Genbank:WP_010930896.1;Name=WP_010930896.1;gbkey=CDS;product=probable AcnD-accessory protein PrpF;protein_id=WP_010930896.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2182584 2184041 . + . ID=gene2095;Name=prpD;gbkey=Gene;gene=prpD;gene_biotype=protein_coding;locus_tag=RD04_RS10480;old_locus_tag=RD04_10460 NZ_CP010961.1 Protein Homology CDS 2182584 2184041 . + 0 ID=cds2055;Parent=gene2095;Dbxref=Genbank:WP_010930897.1;Name=WP_010930897.1;Note=functions in propionate metabolism%3B involved in isomerization of (2S%2C3S)-methylcitrate to (2R%2C3S)-methylisocitrate%3B also encodes minor aconitase or dehydratase activity%3B aconitase C;gbkey=CDS;gene=prpD;product=2-methylcitrate dehydratase;protein_id=WP_010930897.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2184111 2184533 . + . ID=gene2096;Name=RD04_RS10485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10485;old_locus_tag=RD04_10465 NZ_CP010961.1 Protein Homology CDS 2184111 2184533 . + 0 ID=cds2056;Parent=gene2096;Dbxref=Genbank:WP_010930898.1;Name=WP_010930898.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930898.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2184563 2185954 . + . ID=gene2097;Name=RD04_RS10490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10490;old_locus_tag=RD04_10470 NZ_CP010961.1 Protein Homology CDS 2184563 2185954 . + 0 ID=cds2057;Parent=gene2097;Dbxref=Genbank:WP_010930899.1;Name=WP_010930899.1;gbkey=CDS;product=DNA methyltransferase;protein_id=WP_010930899.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2186168 2186350 . + . ID=gene2098;Name=RD04_RS10495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10495;old_locus_tag=RD04_10475 NZ_CP010961.1 Protein Homology CDS 2186168 2186350 . + 0 ID=cds2058;Parent=gene2098;Dbxref=Genbank:WP_003813674.1;Name=WP_003813674.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813674.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2186483 2186986 . + . ID=gene2099;Name=RD04_RS10500;end_range=2186986,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS10500;old_locus_tag=RD04_10480;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2186483 2186986 . + 0 ID=cds2059;Parent=gene2099;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=2186986,.;gbkey=CDS;partial=true;product=RDD family protein 2;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2187078 2187950 . + . ID=gene2100;Name=RD04_RS10505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10505;old_locus_tag=RD04_10485 NZ_CP010961.1 Protein Homology CDS 2187078 2187950 . + 0 ID=cds2060;Parent=gene2100;Dbxref=Genbank:WP_003813679.1;Name=WP_003813679.1;gbkey=CDS;product=UDP-2%2C3-diacylglucosamine hydrolase;protein_id=WP_003813679.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2188088 2189752 . + . ID=gene2101;Name=RD04_RS10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10510;old_locus_tag=RD04_10490 NZ_CP010961.1 Protein Homology CDS 2188088 2189752 . + 0 ID=cds2061;Parent=gene2101;Dbxref=Genbank:WP_003813682.1;Name=WP_003813682.1;gbkey=CDS;product=AMP-binding protein;protein_id=WP_003813682.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2189764 2190285 . + . ID=gene2102;Name=RD04_RS10515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10515;old_locus_tag=RD04_10495 NZ_CP010961.1 Protein Homology CDS 2189764 2190285 . + 0 ID=cds2062;Parent=gene2102;Dbxref=Genbank:WP_003813683.1;Name=WP_003813683.1;gbkey=CDS;product=gamma carbonic anhydrase family protein;protein_id=WP_003813683.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2190335 2191249 . + . ID=gene2103;Name=RD04_RS10520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10520;old_locus_tag=RD04_10500 NZ_CP010961.1 Protein Homology CDS 2190335 2191249 . + 0 ID=cds2063;Parent=gene2103;Dbxref=Genbank:WP_010930902.1;Name=WP_010930902.1;gbkey=CDS;product=molecular chaperone Hsp33;protein_id=WP_010930902.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2191326 2192078 . + . ID=gene2104;Name=RD04_RS10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10525;old_locus_tag=RD04_10505 NZ_CP010961.1 Protein Homology CDS 2191326 2192078 . + 0 ID=cds2064;Parent=gene2104;Dbxref=Genbank:WP_010930903.1;Name=WP_010930903.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930903.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2192056 2192457 . - . ID=gene2105;Name=RD04_RS10530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10530;old_locus_tag=RD04_10510 NZ_CP010961.1 Protein Homology CDS 2192056 2192457 . - 0 ID=cds2065;Parent=gene2105;Dbxref=Genbank:WP_010930904.1;Name=WP_010930904.1;gbkey=CDS;product=cupin;protein_id=WP_010930904.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2192482 2192961 . - . ID=gene2106;Name=RD04_RS10535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10535;old_locus_tag=RD04_10515 NZ_CP010961.1 Protein Homology CDS 2192482 2192961 . - 0 ID=cds2066;Parent=gene2106;Dbxref=Genbank:WP_010926932.1;Name=WP_010926932.1;gbkey=CDS;product=alkylhydroperoxidase;protein_id=WP_010926932.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2193011 2193766 . - . ID=gene2107;Name=RD04_RS10540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10540;old_locus_tag=RD04_10520 NZ_CP010961.1 Protein Homology CDS 2193011 2193766 . - 0 ID=cds2067;Parent=gene2107;Dbxref=Genbank:WP_003813694.1;Name=WP_003813694.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003813694.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2193965 2195530 . + . ID=gene2108;Name=RD04_RS10545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10545;old_locus_tag=RD04_10525 NZ_CP010961.1 Protein Homology CDS 2193965 2195530 . + 0 ID=cds2068;Parent=gene2108;Dbxref=Genbank:WP_010930905.1;Name=WP_010930905.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010930905.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2195598 2195954 . - . ID=gene2109;Name=RD04_RS10550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10550;old_locus_tag=RD04_10530 NZ_CP010961.1 Protein Homology CDS 2195598 2195954 . - 0 ID=cds2069;Parent=gene2109;Dbxref=Genbank:WP_003813698.1;Name=WP_003813698.1;gbkey=CDS;product=cell division protein FtsB;protein_id=WP_003813698.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2196036 2197322 . - . ID=gene2110;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=RD04_RS10555;old_locus_tag=RD04_10535 NZ_CP010961.1 Protein Homology CDS 2196036 2197322 . - 0 ID=cds2070;Parent=gene2110;Dbxref=Genbank:WP_003813700.1;Name=WP_003813700.1;Note=catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis;gbkey=CDS;gene=eno;product=enolase;protein_id=WP_003813700.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2197328 2197612 . - . ID=gene2111;Name=RD04_RS10560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10560;old_locus_tag=RD04_10540 NZ_CP010961.1 Protein Homology CDS 2197328 2197612 . - 0 ID=cds2071;Parent=gene2111;Dbxref=Genbank:WP_003813702.1;Name=WP_003813702.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813702.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2197622 2198476 . - . ID=gene2112;Name=RD04_RS10565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10565;old_locus_tag=RD04_10545 NZ_CP010961.1 Protein Homology CDS 2197622 2198476 . - 0 ID=cds2072;Parent=gene2112;Dbxref=Genbank:WP_023853262.1;Name=WP_023853262.1;gbkey=CDS;product=3-deoxy-8-phosphooctulonate synthase;protein_id=WP_023853262.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2198476 2200128 . - . ID=gene2113;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=RD04_RS10570;old_locus_tag=RD04_10550 NZ_CP010961.1 Protein Homology CDS 2198476 2200128 . - 0 ID=cds2073;Parent=gene2113;Dbxref=Genbank:WP_003813705.1;Name=WP_003813705.1;Note=CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer;gbkey=CDS;gene=pyrG;product=CTP synthetase;protein_id=WP_003813705.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2200210 2201112 . - . ID=gene2114;Name=RD04_RS10575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10575;old_locus_tag=RD04_10555 NZ_CP010961.1 GeneMarkS+ CDS 2200210 2201112 . - 0 ID=cds2074;Parent=gene2114;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2201393 2203192 . - . ID=gene2115;Name=RD04_RS10580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10580;old_locus_tag=RD04_10560 NZ_CP010961.1 Protein Homology CDS 2201393 2203192 . - 0 ID=cds2075;Parent=gene2115;Dbxref=Genbank:WP_010930907.1;Name=WP_010930907.1;gbkey=CDS;product=aminopeptidase;protein_id=WP_010930907.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2203201 2204005 . - . ID=gene2116;Name=RD04_RS10585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS10585;old_locus_tag=RD04_10565;pseudo=true NZ_CP010961.1 Protein Homology CDS 2203201 2204005 . - 0 ID=cds2076;Parent=gene2116;Note=frameshifted;gbkey=CDS;product=aminopeptidase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2204032 2205180 . - . ID=gene2117;Name=RD04_RS10590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10590;old_locus_tag=RD04_10570 NZ_CP010961.1 Protein Homology CDS 2204032 2205180 . - 0 ID=cds2077;Parent=gene2117;Dbxref=Genbank:WP_003813710.1;Name=WP_003813710.1;gbkey=CDS;product=D-aminopeptidase;protein_id=WP_003813710.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2205198 2206097 . - . ID=gene2118;Name=RD04_RS10595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10595;old_locus_tag=RD04_10575 NZ_CP010961.1 Protein Homology CDS 2205198 2206097 . - 0 ID=cds2078;Parent=gene2118;Dbxref=Genbank:WP_010930908.1;Name=WP_010930908.1;Note=with GsiABD is involved in the transport of glutathione into the cell;gbkey=CDS;product=glutathione ABC transporter permease GsiD;protein_id=WP_010930908.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2206105 2207025 . - . ID=gene2119;Name=RD04_RS10600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10600;old_locus_tag=RD04_10580 NZ_CP010961.1 Protein Homology CDS 2206105 2207025 . - 0 ID=cds2079;Parent=gene2119;Dbxref=Genbank:WP_003813715.1;Name=WP_003813715.1;Note=with GsiABD is involved in the transport of glutathione into the cell;gbkey=CDS;product=glutathione ABC transporter permease GsiC;protein_id=WP_003813715.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2207087 2208640 . - . ID=gene2120;Name=RD04_RS10605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10605;old_locus_tag=RD04_10585 NZ_CP010961.1 Protein Homology CDS 2207087 2208640 . - 0 ID=cds2080;Parent=gene2120;Dbxref=Genbank:WP_010930909.1;Name=WP_010930909.1;Note=with GsiACD is involved in the transport of glutathione into the cell;gbkey=CDS;product=glutathione ABC transporter substrate-binding protein GsiB;protein_id=WP_010930909.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2208711 2210612 . - . ID=gene2121;Name=RD04_RS10610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10610;old_locus_tag=RD04_10590 NZ_CP010961.1 Protein Homology CDS 2208711 2210612 . - 0 ID=cds2081;Parent=gene2121;Dbxref=Genbank:WP_010930910.1;Name=WP_010930910.1;Note=with GsiBCD is involved in glutathione import%3B GsiA contains 2 ATP-binding domains;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930910.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2210657 2211637 . - . ID=gene2122;Name=RD04_RS10615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10615;old_locus_tag=RD04_10595 NZ_CP010961.1 Protein Homology CDS 2210657 2211637 . - 0 ID=cds2082;Parent=gene2122;Dbxref=Genbank:WP_010930911.1;Name=WP_010930911.1;gbkey=CDS;product=L-asparaginase;protein_id=WP_010930911.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2211634 2212497 . - . ID=gene2123;Name=RD04_RS10620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10620;old_locus_tag=RD04_10600 NZ_CP010961.1 Protein Homology CDS 2211634 2212497 . - 0 ID=cds2083;Parent=gene2123;Dbxref=Genbank:WP_050818142.1;Name=WP_050818142.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_050818142.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2212741 2213394 . - . ID=gene2124;Name=RD04_RS10625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10625;old_locus_tag=RD04_10605 NZ_CP010961.1 Protein Homology CDS 2212741 2213394 . - 0 ID=cds2084;Parent=gene2124;Dbxref=Genbank:WP_003813726.1;Name=WP_003813726.1;gbkey=CDS;product=succinyl-CoA--3-ketoacid-CoA transferase;protein_id=WP_003813726.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2213407 2214104 . - . ID=gene2125;Name=RD04_RS10630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS10630;old_locus_tag=RD04_10610;pseudo=true NZ_CP010961.1 Protein Homology CDS 2213407 2214104 . - 0 ID=cds2085;Parent=gene2125;Note=frameshifted;gbkey=CDS;product=succinyl-CoA--3-ketoacid-CoA transferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2214208 2214657 . - . ID=gene2126;Name=RD04_RS10635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10635;old_locus_tag=RD04_10615 NZ_CP010961.1 Protein Homology CDS 2214208 2214657 . - 0 ID=cds2086;Parent=gene2126;Dbxref=Genbank:WP_003813730.1;Name=WP_003813730.1;gbkey=CDS;product=thioesterase;protein_id=WP_003813730.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2214767 2216413 . + . ID=gene2127;Name=RD04_RS10640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10640;old_locus_tag=RD04_10620 NZ_CP010961.1 Protein Homology CDS 2214767 2216413 . + 0 ID=cds2087;Parent=gene2127;Dbxref=Genbank:WP_023995177.1;Name=WP_023995177.1;gbkey=CDS;product=electron-transferring-flavoprotein dehydrogenase;protein_id=WP_023995177.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2216511 2217395 . + . ID=gene2128;Name=RD04_RS10645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10645;old_locus_tag=RD04_10625 NZ_CP010961.1 Protein Homology CDS 2216511 2217395 . + 0 ID=cds2088;Parent=gene2128;Dbxref=Genbank:WP_010930914.1;Name=WP_010930914.1;gbkey=CDS;product=epimerase;protein_id=WP_010930914.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2217392 2218540 . + . ID=gene2129;Name=RD04_RS10650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10650;old_locus_tag=RD04_10630 NZ_CP010961.1 Protein Homology CDS 2217392 2218540 . + 0 ID=cds2089;Parent=gene2129;Dbxref=Genbank:WP_010930915.1;Name=WP_010930915.1;gbkey=CDS;product=cytochrome P450;protein_id=WP_010930915.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2218537 2218899 . + . ID=gene2130;Name=RD04_RS10655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10655;old_locus_tag=RD04_10635 NZ_CP010961.1 Protein Homology CDS 2218537 2218899 . + 0 ID=cds2090;Parent=gene2130;Dbxref=Genbank:WP_010930916.1;Name=WP_010930916.1;gbkey=CDS;product=antibiotic biosynthesis monooxygenase;protein_id=WP_010930916.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2218913 2219932 . - . ID=gene2131;Name=RD04_RS10660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10660;old_locus_tag=RD04_10640 NZ_CP010961.1 Protein Homology CDS 2218913 2219932 . - 0 ID=cds2091;Parent=gene2131;Dbxref=Genbank:WP_003813743.1;Name=WP_003813743.1;gbkey=CDS;product=threonine aldolase;protein_id=WP_003813743.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2219954 2220811 . - . ID=gene2132;Name=RD04_RS10665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10665;old_locus_tag=RD04_10645 NZ_CP010961.1 Protein Homology CDS 2219954 2220811 . - 0 ID=cds2092;Parent=gene2132;Dbxref=Genbank:WP_033446301.1;Name=WP_033446301.1;gbkey=CDS;product=permease;protein_id=WP_033446301.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2220990 2222969 . - . ID=gene2133;Name=RD04_RS10670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10670;old_locus_tag=RD04_10650 NZ_CP010961.1 Protein Homology CDS 2220990 2222969 . - 0 ID=cds2093;Parent=gene2133;Dbxref=Genbank:WP_010930918.1;Name=WP_010930918.1;gbkey=CDS;product=acetyl-coenzyme A synthetase;protein_id=WP_010930918.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2223181 2224402 . - . ID=gene2134;Name=RD04_RS10675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS10675;old_locus_tag=RD04_10655;pseudo=true NZ_CP010961.1 Protein Homology CDS 2223181 2224402 . - 0 ID=cds2094;Parent=gene2134;Note=frameshifted;gbkey=CDS;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2224515 2224922 . - . ID=gene2135;Name=RD04_RS10680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10680;old_locus_tag=RD04_10660 NZ_CP010961.1 Protein Homology CDS 2224515 2224922 . - 0 ID=cds2095;Parent=gene2135;Dbxref=Genbank:WP_003821377.1;Name=WP_003821377.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003821377.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2224919 2226457 . - . ID=gene2136;Name=prpE;gbkey=Gene;gene=prpE;gene_biotype=protein_coding;locus_tag=RD04_RS10685;old_locus_tag=RD04_10665 NZ_CP010961.1 Protein Homology CDS 2224919 2226457 . - 0 ID=cds2096;Parent=gene2136;Dbxref=Genbank:WP_019247814.1;Name=WP_019247814.1;Note=catalyzes the formation of propionyl-CoA using propionate as a substrate%3B PrpE from Ralstonia solanacearum can produce acetyl-%2C propionyl-%2C butyryl- and acrylyl-coenzyme A%2C and Salmonella enterica produces propionyl- and butyryl-coenzyme A%3B not expressed in Escherichia coli when grown on propionate/minimal media%3B ATP-dependent;gbkey=CDS;gene=prpE;product=propionate--CoA ligase;protein_id=WP_019247814.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2227043 2227702 . + . ID=gene2137;Name=RD04_RS10690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10690;old_locus_tag=RD04_10670 NZ_CP010961.1 Protein Homology CDS 2227043 2227702 . + 0 ID=cds2097;Parent=gene2137;Dbxref=Genbank:WP_010930919.1;Name=WP_010930919.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010930919.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2227807 2228148 . - . ID=gene2138;Name=RD04_RS10695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10695;old_locus_tag=RD04_10675 NZ_CP010961.1 Protein Homology CDS 2227807 2228148 . - 0 ID=cds2098;Parent=gene2138;Dbxref=Genbank:WP_010930920.1;Name=WP_010930920.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930920.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2228505 2229407 . + . ID=gene2139;Name=RD04_RS10700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10700;old_locus_tag=RD04_10680 NZ_CP010961.1 GeneMarkS+ CDS 2228505 2229407 . + 0 ID=cds2099;Parent=gene2139;Dbxref=Genbank:WP_023998241.1;Name=WP_023998241.1;gbkey=CDS;product=transposase;protein_id=WP_023998241.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2229404 2230357 . - . ID=gene2140;Name=RD04_RS10705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10705;old_locus_tag=RD04_10685 NZ_CP010961.1 Protein Homology CDS 2229404 2230357 . - 0 ID=cds2100;Parent=gene2140;Dbxref=Genbank:WP_014486084.1;Name=WP_014486084.1;gbkey=CDS;product=CysB family transcriptional regulator;protein_id=WP_014486084.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2230457 2231923 . - . ID=gene2141;Name=RD04_RS10710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10710;old_locus_tag=RD04_10690 NZ_CP010961.1 Protein Homology CDS 2230457 2231923 . - 0 ID=cds2101;Parent=gene2141;Dbxref=Genbank:WP_010930923.1;Name=WP_010930923.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010930923.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2232036 2233253 . - . ID=gene2142;Name=RD04_RS10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10715;old_locus_tag=RD04_10695 NZ_CP010961.1 Protein Homology CDS 2232036 2233253 . - 0 ID=cds2102;Parent=gene2142;Dbxref=Genbank:WP_003821372.1;Name=WP_003821372.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003821372.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2233393 2234313 . + . ID=gene2143;Name=RD04_RS10720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10720;old_locus_tag=RD04_10700 NZ_CP010961.1 Protein Homology CDS 2233393 2234313 . + 0 ID=cds2103;Parent=gene2143;Dbxref=Genbank:WP_003821371.1;Name=WP_003821371.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003821371.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2234310 2235422 . - . ID=gene2144;Name=RD04_RS10725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10725;old_locus_tag=RD04_10705 NZ_CP010961.1 Protein Homology CDS 2234310 2235422 . - 0 ID=cds2104;Parent=gene2144;Dbxref=Genbank:WP_010930924.1;Name=WP_010930924.1;gbkey=CDS;product=LPS export ABC transporter permease LptF;protein_id=WP_010930924.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2235476 2236975 . + . ID=gene2145;Name=RD04_RS10730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10730;old_locus_tag=RD04_10710 NZ_CP010961.1 Protein Homology CDS 2235476 2236975 . + 0 ID=cds2105;Parent=gene2145;Dbxref=Genbank:WP_003821370.1;Name=WP_003821370.1;gbkey=CDS;product=cytosol aminopeptidase;protein_id=WP_003821370.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2236993 2237448 . + . ID=gene2146;Name=RD04_RS10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10735;old_locus_tag=RD04_10715 NZ_CP010961.1 Protein Homology CDS 2236993 2237448 . + 0 ID=cds2106;Parent=gene2146;Dbxref=Genbank:WP_003813769.1;Name=WP_003813769.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813769.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2237479 2237805 . + . ID=gene2147;Name=RD04_RS10740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10740;old_locus_tag=RD04_10720 NZ_CP010961.1 Protein Homology CDS 2237479 2237805 . + 0 ID=cds2107;Parent=gene2147;Dbxref=Genbank:WP_003821368.1;Name=WP_003821368.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003821368.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2237904 2238614 . + . ID=gene2148;Name=RD04_RS10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10745;old_locus_tag=RD04_10725 NZ_CP010961.1 Protein Homology CDS 2237904 2238614 . + 0 ID=cds2108;Parent=gene2148;Dbxref=Genbank:WP_003813772.1;Name=WP_003813772.1;gbkey=CDS;product=BAX inhibitor protein;protein_id=WP_003813772.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2238814 2239749 . + . ID=gene2149;Name=RD04_RS10750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10750;old_locus_tag=RD04_10730 NZ_CP010961.1 Protein Homology CDS 2238814 2239749 . + 0 ID=cds2109;Parent=gene2149;Dbxref=Genbank:WP_047122812.1;Name=WP_047122812.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_047122812.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2239846 2240715 . + . ID=gene2150;Name=RD04_RS10755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10755;old_locus_tag=RD04_10735 NZ_CP010961.1 Protein Homology CDS 2239846 2240715 . + 0 ID=cds2110;Parent=gene2150;Dbxref=Genbank:WP_010930926.1;Name=WP_010930926.1;gbkey=CDS;product=succinylglutamate desuccinylase;protein_id=WP_010930926.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2241825 2242867 . + . ID=gene2151;Name=RD04_RS10760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS10760;old_locus_tag=RD04_10740;pseudo=true NZ_CP010961.1 Protein Homology CDS 2241825 2242867 . + 0 ID=cds2111;Parent=gene2151;Note=frameshifted;gbkey=CDS;product=threonine synthase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2242864 2243784 . - . ID=gene2152;Name=RD04_RS10765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10765;old_locus_tag=RD04_10745 NZ_CP010961.1 Protein Homology CDS 2242864 2243784 . - 0 ID=cds2112;Parent=gene2152;Dbxref=Genbank:WP_004566380.1;Name=WP_004566380.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_004566380.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2243804 2244391 . - . ID=gene2153;Name=RD04_RS10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10770;old_locus_tag=RD04_10750 NZ_CP010961.1 Protein Homology CDS 2243804 2244391 . - 0 ID=cds2113;Parent=gene2153;Dbxref=Genbank:WP_010930928.1;Name=WP_010930928.1;gbkey=CDS;product=DNA repair protein RecO;protein_id=WP_010930928.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2244384 2245274 . - . ID=gene2154;Name=RD04_RS10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10775;old_locus_tag=RD04_10755 NZ_CP010961.1 Protein Homology CDS 2244384 2245274 . - 0 ID=cds2114;Parent=gene2154;Dbxref=Genbank:WP_003813784.1;Name=WP_003813784.1;gbkey=CDS;product=GTPase Era;protein_id=WP_003813784.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2245271 2246032 . - . ID=gene2155;Name=RD04_RS10780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10780;old_locus_tag=RD04_10760 NZ_CP010961.1 Protein Homology CDS 2245271 2246032 . - 0 ID=cds2115;Parent=gene2155;Dbxref=Genbank:WP_023853248.1;Name=WP_023853248.1;gbkey=CDS;product=ribonuclease III;protein_id=WP_023853248.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2246038 2246922 . - . ID=gene2156;Name=RD04_RS10785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10785;old_locus_tag=RD04_10765 NZ_CP010961.1 Protein Homology CDS 2246038 2246922 . - 0 ID=cds2116;Parent=gene2156;Dbxref=Genbank:WP_010930929.1;Name=WP_010930929.1;gbkey=CDS;product=signal peptidase I;protein_id=WP_010930929.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2246945 2248738 . - . ID=gene2157;Name=RD04_RS10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10790;old_locus_tag=RD04_10770 NZ_CP010961.1 Protein Homology CDS 2246945 2248738 . - 0 ID=cds2117;Parent=gene2157;Dbxref=Genbank:WP_010930930.1;Name=WP_010930930.1;gbkey=CDS;product=elongation factor 4;protein_id=WP_010930930.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2248869 2250356 . - . ID=gene2158;Name=RD04_RS10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10795;old_locus_tag=RD04_10775 NZ_CP010961.1 Protein Homology CDS 2248869 2250356 . - 0 ID=cds2118;Parent=gene2158;Dbxref=Genbank:WP_004566381.1;Name=WP_004566381.1;gbkey=CDS;product=serine protease;protein_id=WP_004566381.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2250394 2251452 . - . ID=gene2159;Name=RD04_RS10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10800;old_locus_tag=RD04_10780 NZ_CP010961.1 Protein Homology CDS 2250394 2251452 . - 0 ID=cds2119;Parent=gene2159;Dbxref=Genbank:WP_010930931.1;Name=WP_010930931.1;gbkey=CDS;product=siderophore-interacting protein;protein_id=WP_010930931.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2251452 2251952 . - . ID=gene2160;Name=RD04_RS10805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10805;old_locus_tag=RD04_10785 NZ_CP010961.1 Protein Homology CDS 2251452 2251952 . - 0 ID=cds2120;Parent=gene2160;Dbxref=Genbank:WP_023853242.1;Name=WP_023853242.1;gbkey=CDS;product=anti sigma-E protein RseA;protein_id=WP_023853242.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2251965 2252564 . - . ID=gene2161;Name=RD04_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10810;old_locus_tag=RD04_10790 NZ_CP010961.1 Protein Homology CDS 2251965 2252564 . - 0 ID=cds2121;Parent=gene2161;Dbxref=Genbank:WP_003813797.1;Name=WP_003813797.1;gbkey=CDS;product=RNA polymerase sigma factor;protein_id=WP_003813797.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2252561 2253061 . - . ID=gene2162;Name=RD04_RS10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10815;old_locus_tag=RD04_10795 NZ_CP010961.1 Protein Homology CDS 2252561 2253061 . - 0 ID=cds2122;Parent=gene2162;Dbxref=Genbank:WP_010930933.1;Name=WP_010930933.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930933.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2253063 2254292 . - . ID=gene2163;Name=RD04_RS10820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10820;old_locus_tag=RD04_10800 NZ_CP010961.1 Protein Homology CDS 2253063 2254292 . - 0 ID=cds2123;Parent=gene2163;Dbxref=Genbank:WP_003813802.1;Name=WP_003813802.1;Note=FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;gbkey=CDS;product=beta-ketoacyl-[acyl-carrier-protein] synthase II;protein_id=WP_003813802.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2254482 2254721 . - . ID=gene2164;Name=RD04_RS10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10825;old_locus_tag=RD04_10805 NZ_CP010961.1 Protein Homology CDS 2254482 2254721 . - 0 ID=cds2124;Parent=gene2164;Dbxref=Genbank:WP_003813816.1;Name=WP_003813816.1;Note=carries the fatty acid chain in fatty acid biosynthesis;gbkey=CDS;product=acyl carrier protein;protein_id=WP_003813816.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2254904 2255656 . - . ID=gene2165;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=RD04_RS10830;old_locus_tag=RD04_10810 NZ_CP010961.1 Protein Homology CDS 2254904 2255656 . - 0 ID=cds2125;Parent=gene2165;Dbxref=Genbank:WP_003813819.1;Name=WP_003813819.1;Note=catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis;gbkey=CDS;gene=fabG;product=beta-ketoacyl-ACP reductase;protein_id=WP_003813819.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2255658 2256593 . - . ID=gene2166;Name=RD04_RS10835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10835;old_locus_tag=RD04_10815 NZ_CP010961.1 Protein Homology CDS 2255658 2256593 . - 0 ID=cds2126;Parent=gene2166;Dbxref=Genbank:WP_010930934.1;Name=WP_010930934.1;gbkey=CDS;product=malonyl CoA-acyl carrier protein transacylase;protein_id=WP_010930934.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2256675 2257661 . - . ID=gene2167;Name=RD04_RS10840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10840;old_locus_tag=RD04_10820 NZ_CP010961.1 Protein Homology CDS 2256675 2257661 . - 0 ID=cds2127;Parent=gene2167;Dbxref=Genbank:WP_010930935.1;Name=WP_010930935.1;Note=FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs;gbkey=CDS;product=3-oxoacyl-ACP synthase III;protein_id=WP_010930935.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2257661 2258719 . - . ID=gene2168;Name=RD04_RS10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10845;old_locus_tag=RD04_10825 NZ_CP010961.1 Protein Homology CDS 2257661 2258719 . - 0 ID=cds2128;Parent=gene2168;Dbxref=Genbank:WP_003821347.1;Name=WP_003821347.1;gbkey=CDS;product=phosphate acyltransferase;protein_id=WP_003821347.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2258776 2258958 . - . ID=gene2169;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=RD04_RS10850;old_locus_tag=RD04_10830 NZ_CP010961.1 Protein Homology CDS 2258776 2258958 . - 0 ID=cds2129;Parent=gene2169;Dbxref=Genbank:WP_003813827.1;Name=WP_003813827.1;Note=some L32 proteins have zinc finger motifs consisting of CXXC while others do not;gbkey=CDS;gene=rpmF;product=50S ribosomal protein L32;protein_id=WP_003813827.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2259010 2259603 . - . ID=gene2170;Name=RD04_RS10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10855;old_locus_tag=RD04_10835 NZ_CP010961.1 Protein Homology CDS 2259010 2259603 . - 0 ID=cds2130;Parent=gene2170;Dbxref=Genbank:WP_010930936.1;Name=WP_010930936.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930936.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2259712 2260311 . + . ID=gene2171;Name=RD04_RS10860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10860;old_locus_tag=RD04_10840 NZ_CP010961.1 Protein Homology CDS 2259712 2260311 . + 0 ID=cds2131;Parent=gene2171;Dbxref=Genbank:WP_003821345.1;Name=WP_003821345.1;gbkey=CDS;product=septum formation inhibitor Maf;protein_id=WP_003821345.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2260308 2261018 . + . ID=gene2172;Name=RD04_RS10865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10865;old_locus_tag=RD04_10845 NZ_CP010961.1 Protein Homology CDS 2260308 2261018 . + 0 ID=cds2132;Parent=gene2172;Dbxref=Genbank:WP_010930937.1;Name=WP_010930937.1;gbkey=CDS;product=S-adenosylmethionine-dependent methyltransferase;protein_id=WP_010930937.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2261020 2261847 . + . ID=gene2173;Name=RD04_RS10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10870;old_locus_tag=RD04_10850 NZ_CP010961.1 Protein Homology CDS 2261020 2261847 . + 0 ID=cds2133;Parent=gene2173;Dbxref=Genbank:WP_010930938.1;Name=WP_010930938.1;gbkey=CDS;product=hydrolase;protein_id=WP_010930938.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2261969 2263657 . + . ID=gene2174;Name=RD04_RS10875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS10875;old_locus_tag=RD04_10855;partial=true;pseudo=true;start_range=.,2261969 NZ_CP010961.1 Protein Homology CDS 2261969 2263657 . + 0 ID=cds2134;Parent=gene2174;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2261969;transl_table=11 NZ_CP010961.1 RefSeq gene 2263664 2264905 . - . ID=gene2175;Name=RD04_RS10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10880;old_locus_tag=RD04_10860 NZ_CP010961.1 Protein Homology CDS 2263664 2264905 . - 0 ID=cds2135;Parent=gene2175;Dbxref=Genbank:WP_003814009.1;Name=WP_003814009.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814009.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2264917 2265690 . - . ID=gene2176;Name=RD04_RS10885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10885;old_locus_tag=RD04_10865 NZ_CP010961.1 Protein Homology CDS 2264917 2265690 . - 0 ID=cds2136;Parent=gene2176;Dbxref=Genbank:WP_003814010.1;Name=WP_003814010.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814010.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2265717 2266619 . - . ID=gene2177;Name=RD04_RS10890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10890;old_locus_tag=RD04_10870 NZ_CP010961.1 GeneMarkS+ CDS 2265717 2266619 . - 0 ID=cds2137;Parent=gene2177;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2267036 2267112 . - . ID=gene2178;Name=RD04_RS10895;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS10895;old_locus_tag=RD04_10875 NZ_CP010961.1 tRNAscan-SE tRNA 2267036 2267112 . - . ID=rna40;Parent=gene2178;anticodon=(pos:complement(2267076..2267078));gbkey=tRNA;product=tRNA-Val NZ_CP010961.1 tRNAscan-SE exon 2267036 2267112 . - . ID=id45;Parent=rna40;anticodon=(pos:complement(2267076..2267078));gbkey=tRNA;product=tRNA-Val NZ_CP010961.1 RefSeq gene 2267147 2267803 . - . ID=gene2179;Name=RD04_RS10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10900;old_locus_tag=RD04_10880 NZ_CP010961.1 Protein Homology CDS 2267147 2267803 . - 0 ID=cds2138;Parent=gene2179;Dbxref=Genbank:WP_010930388.1;Name=WP_010930388.1;gbkey=CDS;product=N-(5'-phosphoribosyl)anthranilate isomerase;protein_id=WP_010930388.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2267818 2269485 . - . ID=gene2180;Name=RD04_RS10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10905;old_locus_tag=RD04_10885 NZ_CP010961.1 Protein Homology CDS 2267818 2269485 . - 0 ID=cds2139;Parent=gene2180;Dbxref=Genbank:WP_010930387.1;Name=WP_010930387.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930387.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2269488 2270117 . - . ID=gene2181;Name=RD04_RS10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10910;old_locus_tag=RD04_10890 NZ_CP010961.1 Protein Homology CDS 2269488 2270117 . - 0 ID=cds2140;Parent=gene2181;Dbxref=Genbank:WP_010930386.1;Name=WP_010930386.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930386.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2270329 2271423 . - . ID=gene2182;Name=RD04_RS10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10915;old_locus_tag=RD04_10895 NZ_CP010961.1 Protein Homology CDS 2270329 2271423 . - 0 ID=cds2141;Parent=gene2182;Dbxref=Genbank:WP_014486072.1;Name=WP_014486072.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_014486072.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2271568 2272380 . - . ID=gene2183;Name=RD04_RS10920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10920;old_locus_tag=RD04_10900 NZ_CP010961.1 Protein Homology CDS 2271568 2272380 . - 0 ID=cds2142;Parent=gene2183;Dbxref=Genbank:WP_010930384.1;Name=WP_010930384.1;gbkey=CDS;product=tRNA pseudouridine(38%2C39%2C40) synthase TruA;protein_id=WP_010930384.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2272384 2273967 . - . ID=gene2184;Name=RD04_RS10925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10925;old_locus_tag=RD04_10905 NZ_CP010961.1 Protein Homology CDS 2272384 2273967 . - 0 ID=cds2143;Parent=gene2184;Dbxref=Genbank:WP_010930383.1;Name=WP_010930383.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930383.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2274138 2275268 . - . ID=gene2185;Name=RD04_RS10930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10930;old_locus_tag=RD04_10910 NZ_CP010961.1 Protein Homology CDS 2274138 2275268 . - 0 ID=cds2144;Parent=gene2185;Dbxref=Genbank:WP_010930382.1;Name=WP_010930382.1;Note=catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde;gbkey=CDS;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_010930382.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2275455 2276531 . - . ID=gene2186;Name=RD04_RS10935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10935;old_locus_tag=RD04_10915 NZ_CP010961.1 Protein Homology CDS 2275455 2276531 . - 0 ID=cds2145;Parent=gene2186;Dbxref=Genbank:WP_010930381.1;Name=WP_010930381.1;Note=catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis;gbkey=CDS;product=3-isopropylmalate dehydrogenase;protein_id=WP_010930381.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2276613 2277263 . - . ID=gene2187;Name=RD04_RS10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10940;old_locus_tag=RD04_10920 NZ_CP010961.1 Protein Homology CDS 2276613 2277263 . - 0 ID=cds2146;Parent=gene2187;Dbxref=Genbank:WP_010930380.1;Name=WP_010930380.1;gbkey=CDS;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_010930380.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2277278 2278681 . - . ID=gene2188;Name=RD04_RS10945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10945;old_locus_tag=RD04_10925 NZ_CP010961.1 Protein Homology CDS 2277278 2278681 . - 0 ID=cds2147;Parent=gene2188;Dbxref=Genbank:WP_010930379.1;Name=WP_010930379.1;Note=dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate;gbkey=CDS;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_010930379.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2278965 2279783 . - . ID=gene2189;Name=RD04_RS10950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10950;old_locus_tag=RD04_10930 NZ_CP010961.1 Protein Homology CDS 2278965 2279783 . - 0 ID=cds2148;Parent=gene2189;Dbxref=Genbank:WP_004567445.1;Name=WP_004567445.1;gbkey=CDS;product=tungsten ABC transporter substrate-binding protein;protein_id=WP_004567445.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2279780 2280484 . - . ID=gene2190;Name=RD04_RS10955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10955;old_locus_tag=RD04_10935 NZ_CP010961.1 Protein Homology CDS 2279780 2280484 . - 0 ID=cds2149;Parent=gene2190;Dbxref=Genbank:WP_010930378.1;Name=WP_010930378.1;gbkey=CDS;product=phosphate ABC transporter ATP-binding protein;protein_id=WP_010930378.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2280481 2281220 . - . ID=gene2191;Name=RD04_RS10960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS10960;old_locus_tag=RD04_10940;pseudo=true NZ_CP010961.1 Protein Homology CDS 2280481 2281220 . - 0 ID=cds2150;Parent=gene2191;Note=frameshifted;gbkey=CDS;product=ABC transporter permease;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2281384 2282499 . + . ID=gene2192;Name=RD04_RS10965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10965;old_locus_tag=RD04_10945 NZ_CP010961.1 Protein Homology CDS 2281384 2282499 . + 0 ID=cds2151;Parent=gene2192;Dbxref=Genbank:WP_010930377.1;Name=WP_010930377.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930377.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2282533 2282907 . - . ID=gene2193;Name=RD04_RS10970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10970;old_locus_tag=RD04_10950 NZ_CP010961.1 Protein Homology CDS 2282533 2282907 . - 0 ID=cds2152;Parent=gene2193;Dbxref=Genbank:WP_004567447.1;Name=WP_004567447.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004567447.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2282930 2284087 . - . ID=gene2194;Name=RD04_RS10975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10975;old_locus_tag=RD04_10955 NZ_CP010961.1 Protein Homology CDS 2282930 2284087 . - 0 ID=cds2153;Parent=gene2194;Dbxref=Genbank:WP_010930376.1;Name=WP_010930376.1;gbkey=CDS;product=formate dehydrogenase subunit gamma;protein_id=WP_010930376.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2284100 2284333 . - . ID=gene2195;Name=RD04_RS10980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10980;old_locus_tag=RD04_10960 NZ_CP010961.1 Protein Homology CDS 2284100 2284333 . - 0 ID=cds2154;Parent=gene2195;Dbxref=Genbank:WP_003812666.1;Name=WP_003812666.1;gbkey=CDS;product=lipoprotein;protein_id=WP_003812666.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2284330 2284957 . - . ID=gene2196;Name=RD04_RS10985;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS10985;old_locus_tag=RD04_10965;pseudo=true NZ_CP010961.1 Protein Homology CDS 2284330 2284957 . - 0 ID=cds2155;Parent=gene2196;Note=frameshifted;gbkey=CDS;product=formate dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2284968 2287937 . - . ID=gene2197;Name=RD04_RS10990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10990;old_locus_tag=RD04_10970 NZ_CP010961.1 Protein Homology CDS 2284968 2287937 . - 0 ID=cds2156;Parent=gene2197;Dbxref=Genbank:WP_019247523.1;Name=WP_019247523.1;gbkey=CDS;product=formate dehydrogenase;protein_id=WP_019247523.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2287952 2288161 . - . ID=gene2198;Name=RD04_RS10995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS10995;old_locus_tag=RD04_10975 NZ_CP010961.1 Protein Homology CDS 2287952 2288161 . - 0 ID=cds2157;Parent=gene2198;Dbxref=Genbank:WP_023853518.1;Name=WP_023853518.1;gbkey=CDS;product=formate dehydrogenase region TAT target;protein_id=WP_023853518.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2288313 2288942 . - . ID=gene2199;Name=RD04_RS11000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11000;old_locus_tag=RD04_10980 NZ_CP010961.1 Protein Homology CDS 2288313 2288942 . - 0 ID=cds2158;Parent=gene2199;Dbxref=Genbank:WP_010930374.1;Name=WP_010930374.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930374.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2288939 2290996 . - . ID=gene2200;Name=RD04_RS11005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11005;old_locus_tag=RD04_10985 NZ_CP010961.1 Protein Homology CDS 2288939 2290996 . - 0 ID=cds2159;Parent=gene2200;Dbxref=Genbank:WP_023994978.1;Name=WP_023994978.1;gbkey=CDS;product=4Fe-4S dicluster domain protein;protein_id=WP_023994978.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2291053 2291733 . - . ID=gene2201;Name=RD04_RS11010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11010;old_locus_tag=RD04_10990 NZ_CP010961.1 Protein Homology CDS 2291053 2291733 . - 0 ID=cds2160;Parent=gene2201;Dbxref=Genbank:WP_010930372.1;Name=WP_010930372.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930372.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2291730 2292290 . - . ID=gene2202;Name=RD04_RS11015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11015;old_locus_tag=RD04_10995 NZ_CP010961.1 Protein Homology CDS 2291730 2292290 . - 0 ID=cds2161;Parent=gene2202;Dbxref=Genbank:WP_003820494.1;Name=WP_003820494.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820494.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2292297 2293394 . - . ID=gene2203;Name=RD04_RS11020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11020;old_locus_tag=RD04_11000 NZ_CP010961.1 Protein Homology CDS 2292297 2293394 . - 0 ID=cds2162;Parent=gene2203;Dbxref=Genbank:WP_004567450.1;Name=WP_004567450.1;gbkey=CDS;product=ATP-binding protein;protein_id=WP_004567450.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2293547 2294140 . + . ID=gene2204;Name=RD04_RS11025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11025;old_locus_tag=RD04_11005 NZ_CP010961.1 Protein Homology CDS 2293547 2294140 . + 0 ID=cds2163;Parent=gene2204;Dbxref=Genbank:WP_010930371.1;Name=WP_010930371.1;gbkey=CDS;product=molybdenum cofactor guanylyltransferase;protein_id=WP_010930371.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2294137 2295429 . + . ID=gene2205;Name=RD04_RS11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11030;old_locus_tag=RD04_11010 NZ_CP010961.1 Protein Homology CDS 2294137 2295429 . + 0 ID=cds2164;Parent=gene2205;Dbxref=Genbank:WP_010930370.1;Name=WP_010930370.1;gbkey=CDS;product=molybdopterin molybdenumtransferase MoeA;protein_id=WP_010930370.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2295443 2295985 . + . ID=gene2206;Name=RD04_RS11035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11035;old_locus_tag=RD04_11015 NZ_CP010961.1 Protein Homology CDS 2295443 2295985 . + 0 ID=cds2165;Parent=gene2206;Dbxref=Genbank:WP_003812685.1;Name=WP_003812685.1;gbkey=CDS;product=molybdopterin-guanine dinucleotide biosynthesis protein MobB;protein_id=WP_003812685.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2295995 2296831 . - . ID=gene2207;Name=RD04_RS11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11040;old_locus_tag=RD04_11020 NZ_CP010961.1 Protein Homology CDS 2295995 2296831 . - 0 ID=cds2166;Parent=gene2207;Dbxref=Genbank:WP_010930369.1;Name=WP_010930369.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010930369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2296865 2297926 . - . ID=gene2208;Name=RD04_RS11045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11045;old_locus_tag=RD04_11025 NZ_CP010961.1 Protein Homology CDS 2296865 2297926 . - 0 ID=cds2167;Parent=gene2208;Dbxref=Genbank:WP_003820487.1;Name=WP_003820487.1;Note=catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis;gbkey=CDS;product=chorismate synthase;protein_id=WP_003820487.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2297968 2299020 . - . ID=gene2209;Name=RD04_RS11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11050;old_locus_tag=RD04_11030 NZ_CP010961.1 Protein Homology CDS 2297968 2299020 . - 0 ID=cds2168;Parent=gene2209;Dbxref=Genbank:WP_019247210.1;Name=WP_019247210.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_019247210.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2299036 2299338 . - . ID=gene2210;Name=RD04_RS11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11055;old_locus_tag=RD04_11035 NZ_CP010961.1 Protein Homology CDS 2299036 2299338 . - 0 ID=cds2169;Parent=gene2210;Dbxref=Genbank:WP_019247209.1;Name=WP_019247209.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247209.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2299480 2300430 . - . ID=gene2211;Name=RD04_RS11060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11060;old_locus_tag=RD04_11040 NZ_CP010961.1 Protein Homology CDS 2299480 2300430 . - 0 ID=cds2170;Parent=gene2211;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2300609 2302303 . + . ID=gene2212;Name=RD04_RS11065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11065;old_locus_tag=RD04_11045 NZ_CP010961.1 Protein Homology CDS 2300609 2302303 . + 0 ID=cds2171;Parent=gene2212;Dbxref=Genbank:WP_010930368.1;Name=WP_010930368.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010930368.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2302300 2303385 . + . ID=gene2213;Name=RD04_RS11070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11070;old_locus_tag=RD04_11050 NZ_CP010961.1 Protein Homology CDS 2302300 2303385 . + 0 ID=cds2172;Parent=gene2213;Dbxref=Genbank:WP_003809599.1;Name=WP_003809599.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003809599.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2303433 2304332 . + . ID=gene2214;Name=RD04_RS11075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11075;old_locus_tag=RD04_11055 NZ_CP010961.1 Protein Homology CDS 2303433 2304332 . + 0 ID=cds2173;Parent=gene2214;Dbxref=Genbank:WP_010930367.1;Name=WP_010930367.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2304343 2304987 . + . ID=gene2215;Name=RD04_RS11080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11080;old_locus_tag=RD04_11060 NZ_CP010961.1 Protein Homology CDS 2304343 2304987 . + 0 ID=cds2174;Parent=gene2215;Dbxref=Genbank:WP_003809593.1;Name=WP_003809593.1;gbkey=CDS;product=phosphoglycerate mutase;protein_id=WP_003809593.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2305106 2305859 . - . ID=gene2216;Name=RD04_RS11085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11085;old_locus_tag=RD04_11065;pseudo=true NZ_CP010961.1 Protein Homology CDS 2305106 2305859 . - 0 ID=cds2175;Parent=gene2216;Note=frameshifted;gbkey=CDS;product=short-chain dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2306009 2309251 . - . ID=gene2217;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=RD04_RS11090;old_locus_tag=RD04_11070 NZ_CP010961.1 Protein Homology CDS 2306009 2309251 . - 0 ID=cds2176;Parent=gene2217;Dbxref=Genbank:WP_050818152.1;Name=WP_050818152.1;Note=four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity;gbkey=CDS;gene=carB;product=carbamoyl phosphate synthase large subunit;protein_id=WP_050818152.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2309262 2310416 . - . ID=gene2218;Name=RD04_RS11095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11095;old_locus_tag=RD04_11075 NZ_CP010961.1 Protein Homology CDS 2309262 2310416 . - 0 ID=cds2177;Parent=gene2218;Dbxref=Genbank:WP_023852833.1;Name=WP_023852833.1;Note=catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers;gbkey=CDS;product=carbamoyl phosphate synthase small subunit;protein_id=WP_023852833.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2310643 2311605 . + . ID=gene2219;Name=RD04_RS11100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11100;old_locus_tag=RD04_11080 NZ_CP010961.1 Protein Homology CDS 2310643 2311605 . + 0 ID=cds2178;Parent=gene2219;Dbxref=Genbank:WP_010930364.1;Name=WP_010930364.1;Note=maintains the balance of metabolites in the pentose-phosphate pathway;gbkey=CDS;product=transaldolase;protein_id=WP_010930364.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2311752 2312654 . + . ID=gene2220;Name=RD04_RS11105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11105;old_locus_tag=RD04_11085 NZ_CP010961.1 GeneMarkS+ CDS 2311752 2312654 . + 0 ID=cds2179;Parent=gene2220;Dbxref=Genbank:WP_023994703.1;Name=WP_023994703.1;gbkey=CDS;product=transposase;protein_id=WP_023994703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2312664 2313353 . - . ID=gene2221;Name=RD04_RS11110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11110;old_locus_tag=RD04_11090 NZ_CP010961.1 Protein Homology CDS 2312664 2313353 . - 0 ID=cds2180;Parent=gene2221;Dbxref=Genbank:WP_010930362.1;Name=WP_010930362.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930362.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2313413 2313850 . - . ID=gene2222;Name=RD04_RS11115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11115;old_locus_tag=RD04_11095 NZ_CP010961.1 Protein Homology CDS 2313413 2313850 . - 0 ID=cds2181;Parent=gene2222;Dbxref=Genbank:WP_003811741.1;Name=WP_003811741.1;gbkey=CDS;product=thioesterase;protein_id=WP_003811741.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2313896 2314789 . - . ID=gene2223;Name=RD04_RS11120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11120;old_locus_tag=RD04_11100 NZ_CP010961.1 Protein Homology CDS 2313896 2314789 . - 0 ID=cds2182;Parent=gene2223;Dbxref=Genbank:WP_003811743.1;Name=WP_003811743.1;gbkey=CDS;product=3-hydroxyisobutyrate dehydrogenase;protein_id=WP_003811743.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2314837 2316009 . - . ID=gene2224;Name=RD04_RS11125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11125;old_locus_tag=RD04_11105 NZ_CP010961.1 Protein Homology CDS 2314837 2316009 . - 0 ID=cds2183;Parent=gene2224;Dbxref=Genbank:WP_003811746.1;Name=WP_003811746.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_003811746.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2316006 2317160 . - . ID=gene2225;Name=RD04_RS11130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11130;old_locus_tag=RD04_11110 NZ_CP010961.1 Protein Homology CDS 2316006 2317160 . - 0 ID=cds2184;Parent=gene2225;Dbxref=Genbank:WP_003811748.1;Name=WP_003811748.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_003811748.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2317357 2317707 . - . ID=gene2226;Name=RD04_RS11135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11135;old_locus_tag=RD04_11115 NZ_CP010961.1 Protein Homology CDS 2317357 2317707 . - 0 ID=cds2185;Parent=gene2226;Dbxref=Genbank:WP_003811750.1;Name=WP_003811750.1;gbkey=CDS;product=electron transporter;protein_id=WP_003811750.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2317697 2318131 . - . ID=gene2227;Name=RD04_RS11140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11140;old_locus_tag=RD04_11120 NZ_CP010961.1 Protein Homology CDS 2317697 2318131 . - 0 ID=cds2186;Parent=gene2227;Dbxref=Genbank:WP_003811752.1;Name=WP_003811752.1;gbkey=CDS;product=ubiquinone-binding protein;protein_id=WP_003811752.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2318148 2319098 . - . ID=gene2228;Name=RD04_RS11145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11145;old_locus_tag=RD04_11125 NZ_CP010961.1 Protein Homology CDS 2318148 2319098 . - 0 ID=cds2187;Parent=gene2228;Dbxref=Genbank:WP_005015810.1;Name=WP_005015810.1;gbkey=CDS;product=transposase;protein_id=WP_005015810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2319246 2319713 . + . ID=gene2229;Name=RD04_RS11150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11150;old_locus_tag=RD04_11130 NZ_CP010961.1 Protein Homology CDS 2319246 2319713 . + 0 ID=cds2188;Parent=gene2229;Dbxref=Genbank:WP_003811754.1;Name=WP_003811754.1;gbkey=CDS;product=SsrA-binding protein;protein_id=WP_003811754.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2319694 2320851 . - . ID=gene2230;Name=RD04_RS11155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11155;old_locus_tag=RD04_11135 NZ_CP010961.1 Protein Homology CDS 2319694 2320851 . - 0 ID=cds2189;Parent=gene2230;Dbxref=Genbank:WP_010930360.1;Name=WP_010930360.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930360.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2320917 2321843 . - . ID=gene2231;Name=RD04_RS11160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11160;old_locus_tag=RD04_11140 NZ_CP010961.1 Protein Homology CDS 2320917 2321843 . - 0 ID=cds2190;Parent=gene2231;Dbxref=Genbank:WP_003811759.1;Name=WP_003811759.1;gbkey=CDS;product=paraslipin;protein_id=WP_003811759.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2322009 2322911 . + . ID=gene2232;Name=RD04_RS11165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11165;old_locus_tag=RD04_11145 NZ_CP010961.1 GeneMarkS+ CDS 2322009 2322911 . + 0 ID=cds2191;Parent=gene2232;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2322946 2323371 . - . ID=gene2233;Name=RD04_RS11170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11170;old_locus_tag=RD04_11150 NZ_CP010961.1 Protein Homology CDS 2322946 2323371 . - 0 ID=cds2192;Parent=gene2233;Dbxref=Genbank:WP_003811761.1;Name=WP_003811761.1;gbkey=CDS;product=membrane protein;protein_id=WP_003811761.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2323495 2324214 . + . ID=gene2234;Name=RD04_RS11175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11175;old_locus_tag=RD04_11155 NZ_CP010961.1 Protein Homology CDS 2323495 2324214 . + 0 ID=cds2193;Parent=gene2234;Dbxref=Genbank:WP_010930359.1;Name=WP_010930359.1;Note=Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group;gbkey=CDS;product=GMP synthase;protein_id=WP_010930359.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2324282 2326645 . - . ID=gene2235;Name=RD04_RS11180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11180;old_locus_tag=RD04_11160 NZ_CP010961.1 Protein Homology CDS 2324282 2326645 . - 0 ID=cds2194;Parent=gene2235;Dbxref=Genbank:WP_010930358.1;Name=WP_010930358.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=phosphoenolpyruvate synthase;protein_id=WP_010930358.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2326807 2327634 . + . ID=gene2236;Name=RD04_RS11185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11185;old_locus_tag=RD04_11165 NZ_CP010961.1 Protein Homology CDS 2326807 2327634 . + 0 ID=cds2195;Parent=gene2236;Dbxref=Genbank:WP_010930357.1;Name=WP_010930357.1;Note=mediates the activation of PEP synthetase by an inorganic phosphate pyrophosphorylation and inactivates PEP synthetase by ADP-dependent phosphorylation;gbkey=CDS;product=phosphoenolpyruvate synthase regulatory protein;protein_id=WP_010930357.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2327646 2328419 . - . ID=gene2237;Name=RD04_RS11190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11190;old_locus_tag=RD04_11170 NZ_CP010961.1 Protein Homology CDS 2327646 2328419 . - 0 ID=cds2196;Parent=gene2237;Dbxref=Genbank:WP_003811768.1;Name=WP_003811768.1;gbkey=CDS;product=RNA methyltransferase;protein_id=WP_003811768.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2328416 2329021 . - . ID=gene2238;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=RD04_RS11195;old_locus_tag=RD04_11175 NZ_CP010961.1 Protein Homology CDS 2328416 2329021 . - 0 ID=cds2197;Parent=gene2238;Dbxref=Genbank:WP_003811770.1;Name=WP_003811770.1;Note=RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids;gbkey=CDS;gene=rnhB;product=ribonuclease HII;protein_id=WP_003811770.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2329008 2330189 . - . ID=gene2239;Name=RD04_RS11200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11200;old_locus_tag=RD04_11180 NZ_CP010961.1 Protein Homology CDS 2329008 2330189 . - 0 ID=cds2198;Parent=gene2239;Dbxref=Genbank:WP_010930356.1;Name=WP_010930356.1;gbkey=CDS;product=lipid-A-disaccharide synthase;protein_id=WP_010930356.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2330186 2330980 . - . ID=gene2240;Name=RD04_RS11205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11205;old_locus_tag=RD04_11185 NZ_CP010961.1 Protein Homology CDS 2330186 2330980 . - 0 ID=cds2199;Parent=gene2240;Dbxref=Genbank:WP_010930355.1;Name=WP_010930355.1;gbkey=CDS;product=acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_010930355.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2330981 2331436 . - . ID=gene2241;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=RD04_RS11210;old_locus_tag=RD04_11190 NZ_CP010961.1 Protein Homology CDS 2330981 2331436 . - 0 ID=cds2200;Parent=gene2241;Dbxref=Genbank:WP_003811776.1;Name=WP_003811776.1;Note=in Pseudomonas aeruginosa this enzyme is a trimer of dimers%3B essential for membrane formation%3B performs third step of type II fatty acid biosynthesis%3B catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP;gbkey=CDS;gene=fabZ;product=beta-hydroxyacyl-ACP dehydratase;protein_id=WP_003811776.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2331508 2332599 . - . ID=gene2242;Name=RD04_RS11215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11215;old_locus_tag=RD04_11195 NZ_CP010961.1 Protein Homology CDS 2331508 2332599 . - 0 ID=cds2201;Parent=gene2242;Dbxref=Genbank:WP_010930354.1;Name=WP_010930354.1;gbkey=CDS;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_010930354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2332608 2333171 . - . ID=gene2243;Name=RD04_RS11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11220;old_locus_tag=RD04_11200 NZ_CP010961.1 Protein Homology CDS 2332608 2333171 . - 0 ID=cds2202;Parent=gene2243;Dbxref=Genbank:WP_003811782.1;Name=WP_003811782.1;gbkey=CDS;product=outer membrane protein chaperone;protein_id=WP_003811782.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2333297 2335633 . - . ID=gene2244;Name=RD04_RS11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11225;old_locus_tag=RD04_11205 NZ_CP010961.1 Protein Homology CDS 2333297 2335633 . - 0 ID=cds2203;Parent=gene2244;Dbxref=Genbank:WP_010930353.1;Name=WP_010930353.1;gbkey=CDS;product=outer membrane protein assembly factor BamA;protein_id=WP_010930353.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2335686 2337020 . - . ID=gene2245;Name=RD04_RS11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11230;old_locus_tag=RD04_11210 NZ_CP010961.1 Protein Homology CDS 2335686 2337020 . - 0 ID=cds2204;Parent=gene2245;Dbxref=Genbank:WP_010930352.1;Name=WP_010930352.1;gbkey=CDS;product=RIP metalloprotease RseP;protein_id=WP_010930352.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2337060 2338259 . - . ID=gene2246;Name=RD04_RS11235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11235;old_locus_tag=RD04_11215 NZ_CP010961.1 Protein Homology CDS 2337060 2338259 . - 0 ID=cds2205;Parent=gene2246;Dbxref=Genbank:WP_003811788.1;Name=WP_003811788.1;gbkey=CDS;product=1-deoxy-D-xylulose-5-phosphate reductoisomerase;protein_id=WP_003811788.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2338256 2339113 . - . ID=gene2247;Name=RD04_RS11240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11240;old_locus_tag=RD04_11220 NZ_CP010961.1 Protein Homology CDS 2338256 2339113 . - 0 ID=cds2206;Parent=gene2247;Dbxref=Genbank:WP_010930351.1;Name=WP_010930351.1;gbkey=CDS;product=phosphatidate cytidylyltransferase;protein_id=WP_010930351.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2339133 2339897 . - . ID=gene2248;Name=RD04_RS11245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11245;old_locus_tag=RD04_11225 NZ_CP010961.1 Protein Homology CDS 2339133 2339897 . - 0 ID=cds2207;Parent=gene2248;Dbxref=Genbank:WP_010930350.1;Name=WP_010930350.1;gbkey=CDS;product=isoprenyl transferase;protein_id=WP_010930350.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2340064 2340624 . - . ID=gene2249;Name=RD04_RS11250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11250;old_locus_tag=RD04_11230 NZ_CP010961.1 Protein Homology CDS 2340064 2340624 . - 0 ID=cds2208;Parent=gene2249;Dbxref=Genbank:WP_003811796.1;Name=WP_003811796.1;gbkey=CDS;product=ribosome recycling factor;protein_id=WP_003811796.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2340639 2341355 . - . ID=gene2250;Name=RD04_RS11255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11255;old_locus_tag=RD04_11235 NZ_CP010961.1 Protein Homology CDS 2340639 2341355 . - 0 ID=cds2209;Parent=gene2250;Dbxref=Genbank:WP_010930349.1;Name=WP_010930349.1;gbkey=CDS;product=UMP kinase;protein_id=WP_010930349.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2341453 2342331 . - . ID=gene2251;Name=RD04_RS11260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11260;old_locus_tag=RD04_11240 NZ_CP010961.1 Protein Homology CDS 2341453 2342331 . - 0 ID=cds2210;Parent=gene2251;Dbxref=Genbank:WP_010926570.1;Name=WP_010926570.1;gbkey=CDS;product=elongation factor Ts;protein_id=WP_010926570.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2342515 2343264 . - . ID=gene2252;Name=RD04_RS11265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11265;old_locus_tag=RD04_11245 NZ_CP010961.1 Protein Homology CDS 2342515 2343264 . - 0 ID=cds2211;Parent=gene2252;Dbxref=Genbank:WP_003811803.1;Name=WP_003811803.1;gbkey=CDS;product=30S ribosomal protein S2;protein_id=WP_003811803.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2343991 2344812 . + . ID=gene2253;Name=RD04_RS11270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11270;old_locus_tag=RD04_11250 NZ_CP010961.1 Protein Homology CDS 2343991 2344812 . + 0 ID=cds2212;Parent=gene2253;Dbxref=Genbank:WP_003811806.1;Name=WP_003811806.1;gbkey=CDS;product=type I methionyl aminopeptidase;protein_id=WP_003811806.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2344842 2347439 . + . ID=gene2254;Name=RD04_RS11275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11275;old_locus_tag=RD04_11255 NZ_CP010961.1 Protein Homology CDS 2344842 2347439 . + 0 ID=cds2213;Parent=gene2254;Dbxref=Genbank:WP_010930348.1;Name=WP_010930348.1;Note=catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein;gbkey=CDS;product=bifunctional uridylyltransferase/uridylyl-removing protein;protein_id=WP_010930348.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2347478 2348158 . + . ID=gene2255;Name=RD04_RS11280;end_range=2348158,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11280;old_locus_tag=RD04_11260;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2347478 2348158 . + 0 ID=cds2214;Parent=gene2255;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=2348158,.;gbkey=CDS;partial=true;product=antibiotic resistance protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2348243 2348719 . + . ID=gene2256;Name=RD04_RS11285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11285;old_locus_tag=RD04_11265 NZ_CP010961.1 Protein Homology CDS 2348243 2348719 . + 0 ID=cds2215;Parent=gene2256;Dbxref=Genbank:WP_003811812.1;Name=WP_003811812.1;gbkey=CDS;product=disulfide bond formation protein DsbB;protein_id=WP_003811812.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2348763 2350283 . - . ID=gene2257;Name=RD04_RS11290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11290;old_locus_tag=RD04_11270 NZ_CP010961.1 Protein Homology CDS 2348763 2350283 . - 0 ID=cds2216;Parent=gene2257;Dbxref=Genbank:WP_003811814.1;Name=WP_003811814.1;gbkey=CDS;product=amidophosphoribosyltransferase;protein_id=WP_003811814.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2350325 2350813 . - . ID=gene2258;Name=RD04_RS11295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11295;old_locus_tag=RD04_11275 NZ_CP010961.1 Protein Homology CDS 2350325 2350813 . - 0 ID=cds2217;Parent=gene2258;Dbxref=Genbank:WP_003811815.1;Name=WP_003811815.1;gbkey=CDS;product=colicin V biosynthesis protein;protein_id=WP_003811815.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2350810 2351640 . - . ID=gene2259;Name=RD04_RS11300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11300;old_locus_tag=RD04_11280 NZ_CP010961.1 Protein Homology CDS 2350810 2351640 . - 0 ID=cds2218;Parent=gene2259;Dbxref=Genbank:WP_023852965.1;Name=WP_023852965.1;gbkey=CDS;product=sporulation and cell division repeat protein;protein_id=WP_023852965.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2351701 2353008 . - . ID=gene2260;Name=RD04_RS11305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11305;old_locus_tag=RD04_11285 NZ_CP010961.1 Protein Homology CDS 2351701 2353008 . - 0 ID=cds2219;Parent=gene2260;Dbxref=Genbank:WP_010930346.1;Name=WP_010930346.1;gbkey=CDS;product=bifunctional folylpolyglutamate synthase/dihydrofolate synthase;protein_id=WP_010930346.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2353271 2353648 . + . ID=gene2261;Name=RD04_RS11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11310;old_locus_tag=RD04_11290 NZ_CP010961.1 Protein Homology CDS 2353271 2353648 . + 0 ID=cds2220;Parent=gene2261;Dbxref=Genbank:WP_003817216.1;Name=WP_003817216.1;gbkey=CDS;product=flagellar protein;protein_id=WP_003817216.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2353789 2355162 . + . ID=gene2262;Name=RD04_RS11315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11315;old_locus_tag=RD04_11295 NZ_CP010961.1 Protein Homology CDS 2353789 2355162 . + 0 ID=cds2221;Parent=gene2262;Dbxref=Genbank:WP_010930345.1;Name=WP_010930345.1;gbkey=CDS;product=flagellar hook protein FliD;protein_id=WP_010930345.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2355170 2355598 . + . ID=gene2263;Name=RD04_RS11320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11320;old_locus_tag=RD04_11300 NZ_CP010961.1 Protein Homology CDS 2355170 2355598 . + 0 ID=cds2222;Parent=gene2263;Dbxref=Genbank:WP_010930344.1;Name=WP_010930344.1;gbkey=CDS;product=flagellar export chaperone FliS;protein_id=WP_010930344.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2355646 2355996 . + . ID=gene2264;Name=RD04_RS11325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11325;old_locus_tag=RD04_11305 NZ_CP010961.1 Protein Homology CDS 2355646 2355996 . + 0 ID=cds2223;Parent=gene2264;Dbxref=Genbank:WP_010930343.1;Name=WP_010930343.1;gbkey=CDS;product=flagellar protein FliT;protein_id=WP_010930343.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2355993 2356262 . + . ID=gene2265;Name=RD04_RS11330;end_range=2356262,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11330;old_locus_tag=RD04_11310;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2355993 2356262 . + 0 ID=cds2224;Parent=gene2265;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=2356262,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2356942 2357268 . + . ID=gene2266;Name=RD04_RS11335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11335;old_locus_tag=RD04_11315 NZ_CP010961.1 Protein Homology CDS 2356942 2357268 . + 0 ID=cds2225;Parent=gene2266;Dbxref=Genbank:WP_019247563.1;Name=WP_019247563.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247563.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2357265 2357591 . + . ID=gene2267;Name=RD04_RS11340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11340;old_locus_tag=RD04_11320 NZ_CP010961.1 Protein Homology CDS 2357265 2357591 . + 0 ID=cds2226;Parent=gene2267;Dbxref=Genbank:WP_010930342.1;Name=WP_010930342.1;gbkey=CDS;product=flagellar biosynthesis protein FlhB;protein_id=WP_010930342.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2357601 2357996 . + . ID=gene2268;Name=RD04_RS11345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11345;old_locus_tag=RD04_11325 NZ_CP010961.1 Protein Homology CDS 2357601 2357996 . + 0 ID=cds2227;Parent=gene2268;Dbxref=Genbank:WP_010930341.1;Name=WP_010930341.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930341.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2358010 2358342 . - . ID=gene2269;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=RD04_RS11350;old_locus_tag=RD04_11330 NZ_CP010961.1 Protein Homology CDS 2358010 2358342 . - 0 ID=cds2228;Parent=gene2269;Dbxref=Genbank:WP_010930340.1;Name=WP_010930340.1;Note=forms a junction between the M-ring and FlgB during flagella biosynthesis;gbkey=CDS;gene=fliE;product=flagellar hook-basal body complex protein FliE;protein_id=WP_010930340.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2358655 2360331 . + . ID=gene2270;Name=RD04_RS11355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11355;old_locus_tag=RD04_11335 NZ_CP010961.1 Protein Homology CDS 2358655 2360331 . + 0 ID=cds2229;Parent=gene2270;Dbxref=Genbank:WP_010930339.1;Name=WP_010930339.1;gbkey=CDS;product=flagellar M-ring protein FliF;protein_id=WP_010930339.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2360321 2361331 . + . ID=gene2271;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=RD04_RS11360;old_locus_tag=RD04_11340 NZ_CP010961.1 Protein Homology CDS 2360321 2361331 . + 0 ID=cds2230;Parent=gene2271;Dbxref=Genbank:WP_003817203.1;Name=WP_003817203.1;Note=One of three proteins involved in switching the direction of the flagellar rotation;gbkey=CDS;gene=fliG;product=flagellar motor switch protein FliG;protein_id=WP_003817203.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2361324 2362079 . + . ID=gene2272;Name=RD04_RS11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11365;old_locus_tag=RD04_11345 NZ_CP010961.1 Protein Homology CDS 2361324 2362079 . + 0 ID=cds2231;Parent=gene2272;Dbxref=Genbank:WP_010930338.1;Name=WP_010930338.1;gbkey=CDS;product=flagellar assembly protein FliH;protein_id=WP_010930338.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2362076 2363551 . + . ID=gene2273;Name=RD04_RS11370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11370;old_locus_tag=RD04_11350 NZ_CP010961.1 Protein Homology CDS 2362076 2363551 . + 0 ID=cds2232;Parent=gene2273;Dbxref=Genbank:WP_019247562.1;Name=WP_019247562.1;gbkey=CDS;product=flagellar protein export ATPase FliI;protein_id=WP_019247562.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2363544 2363990 . + . ID=gene2274;Name=RD04_RS11375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11375;old_locus_tag=RD04_11355 NZ_CP010961.1 Protein Homology CDS 2363544 2363990 . + 0 ID=cds2233;Parent=gene2274;Dbxref=Genbank:WP_003811846.1;Name=WP_003811846.1;gbkey=CDS;product=flagellar protein FliJ;protein_id=WP_003811846.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2363996 2365090 . + . ID=gene2275;Name=RD04_RS11380;end_range=2365090,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11380;old_locus_tag=RD04_11360;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2363996 2365090 . + 0 ID=cds2234;Parent=gene2275;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=2365090,.;gbkey=CDS;partial=true;product=flagellar hook-length control protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2365240 2366142 . + . ID=gene2276;Name=RD04_RS11385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11385;old_locus_tag=RD04_11365 NZ_CP010961.1 GeneMarkS+ CDS 2365240 2366142 . + 0 ID=cds2235;Parent=gene2276;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2366158 2366370 . + . ID=gene2277;Name=RD04_RS11390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11390;old_locus_tag=RD04_11370 NZ_CP010961.1 GeneMarkS+ CDS 2366158 2366370 . + 0 ID=cds2236;Parent=gene2277;Dbxref=Genbank:WP_024001249.1;Name=WP_024001249.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024001249.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2366512 2367084 . + . ID=gene2278;Name=RD04_RS11395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11395;old_locus_tag=RD04_11375 NZ_CP010961.1 Protein Homology CDS 2366512 2367084 . + 0 ID=cds2237;Parent=gene2278;Dbxref=Genbank:WP_003811850.1;Name=WP_003811850.1;gbkey=CDS;product=flagellar basal body protein FliL;protein_id=WP_003811850.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2367087 2368097 . + . ID=gene2279;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=RD04_RS11400;old_locus_tag=RD04_11380 NZ_CP010961.1 Protein Homology CDS 2367087 2368097 . + 0 ID=cds2238;Parent=gene2279;Dbxref=Genbank:WP_003811852.1;Name=WP_003811852.1;Note=with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation;gbkey=CDS;gene=fliM;product=flagellar motor switch protein FliM;protein_id=WP_003811852.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2368090 2368590 . + . ID=gene2280;Name=RD04_RS11405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11405;old_locus_tag=RD04_11385 NZ_CP010961.1 Protein Homology CDS 2368090 2368590 . + 0 ID=cds2239;Parent=gene2280;Dbxref=Genbank:WP_010930335.1;Name=WP_010930335.1;gbkey=CDS;product=flagellar motor switch protein FliN;protein_id=WP_010930335.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2368601 2368942 . + . ID=gene2281;Name=RD04_RS11410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11410;old_locus_tag=RD04_11390 NZ_CP010961.1 Protein Homology CDS 2368601 2368942 . + 0 ID=cds2240;Parent=gene2281;Dbxref=Genbank:WP_003811855.1;Name=WP_003811855.1;gbkey=CDS;product=flagellar assembly protein FliO;protein_id=WP_003811855.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2369011 2369745 . + . ID=gene2282;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=RD04_RS11415;old_locus_tag=RD04_11395 NZ_CP010961.1 Protein Homology CDS 2369011 2369745 . + 0 ID=cds2241;Parent=gene2282;Dbxref=Genbank:WP_010930334.1;Name=WP_010930334.1;Note=FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus;gbkey=CDS;gene=fliP;product=flagellar biosynthetic protein FliP;protein_id=WP_010930334.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2369762 2370031 . + . ID=gene2283;Name=RD04_RS11420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11420;old_locus_tag=RD04_11400 NZ_CP010961.1 Protein Homology CDS 2369762 2370031 . + 0 ID=cds2242;Parent=gene2283;Dbxref=Genbank:WP_003811859.1;Name=WP_003811859.1;gbkey=CDS;product=flagellar biosynthetic protein FliQ;protein_id=WP_003811859.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2370054 2370842 . + . ID=gene2284;Name=RD04_RS11425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11425;old_locus_tag=RD04_11405 NZ_CP010961.1 Protein Homology CDS 2370054 2370842 . + 0 ID=cds2243;Parent=gene2284;Dbxref=Genbank:WP_010930333.1;Name=WP_010930333.1;gbkey=CDS;product=flagellar biosynthesis protein FliR;protein_id=WP_010930333.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2370889 2371905 . - . ID=gene2285;Name=RD04_RS11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11430;old_locus_tag=RD04_11410 NZ_CP010961.1 Protein Homology CDS 2370889 2371905 . - 0 ID=cds2244;Parent=gene2285;Dbxref=Genbank:WP_010929632.1;Name=WP_010929632.1;gbkey=CDS;product=transposase;protein_id=WP_010929632.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2372122 2373564 . - . ID=gene2286;Name=RD04_RS11435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11435;old_locus_tag=RD04_11415 NZ_CP010961.1 Protein Homology CDS 2372122 2373564 . - 0 ID=cds2245;Parent=gene2286;Dbxref=Genbank:WP_014486070.1;Name=WP_014486070.1;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_014486070.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2373743 2375362 . - . ID=gene2287;Name=RD04_RS11440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11440;old_locus_tag=RD04_11420 NZ_CP010961.1 Protein Homology CDS 2373743 2375362 . - 0 ID=cds2246;Parent=gene2287;Dbxref=Genbank:WP_010930332.1;Name=WP_010930332.1;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_010930332.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2375483 2377303 . - . ID=gene2288;Name=RD04_RS11445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11445;old_locus_tag=RD04_11425 NZ_CP010961.1 Protein Homology CDS 2375483 2377303 . - 0 ID=cds2247;Parent=gene2288;Dbxref=Genbank:WP_010930331.1;Name=WP_010930331.1;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_010930331.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2377382 2378914 . - . ID=gene2289;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=RD04_RS11450;old_locus_tag=RD04_11430 NZ_CP010961.1 Protein Homology CDS 2377382 2378914 . - 0 ID=cds2248;Parent=gene2289;Dbxref=Genbank:WP_010930330.1;Name=WP_010930330.1;Note=With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook;gbkey=CDS;gene=flgL;product=flagellar hook-associated protein FlgL;protein_id=WP_010930330.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2378948 2380594 . - . ID=gene2290;Name=RD04_RS11455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11455;old_locus_tag=RD04_11435 NZ_CP010961.1 Protein Homology CDS 2378948 2380594 . - 0 ID=cds2249;Parent=gene2290;Dbxref=Genbank:WP_010930329.1;Name=WP_010930329.1;gbkey=CDS;product=flagellar hook-associated protein FlgK;protein_id=WP_010930329.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2380664 2381686 . - . ID=gene2291;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=RD04_RS11460;old_locus_tag=RD04_11440 NZ_CP010961.1 Protein Homology CDS 2380664 2381686 . - 0 ID=cds2250;Parent=gene2291;Dbxref=Genbank:WP_010930328.1;Name=WP_010930328.1;Note=Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space;gbkey=CDS;gene=flgJ;product=flagellar rod assembly protein FlgJ;protein_id=WP_010930328.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2381704 2382837 . - . ID=gene2292;Name=RD04_RS11465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11465;old_locus_tag=RD04_11445 NZ_CP010961.1 Protein Homology CDS 2381704 2382837 . - 0 ID=cds2251;Parent=gene2292;Dbxref=Genbank:WP_010930327.1;Name=WP_010930327.1;gbkey=CDS;product=flagellar basal body P-ring protein;protein_id=WP_010930327.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2382840 2383529 . - . ID=gene2293;Name=RD04_RS11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11470;old_locus_tag=RD04_11450 NZ_CP010961.1 Protein Homology CDS 2382840 2383529 . - 0 ID=cds2252;Parent=gene2293;Dbxref=Genbank:WP_010930326.1;Name=WP_010930326.1;gbkey=CDS;product=flagellar L-ring protein;protein_id=WP_010930326.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2383529 2384314 . - . ID=gene2294;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=RD04_RS11475;old_locus_tag=RD04_11455 NZ_CP010961.1 Protein Homology CDS 2383529 2384314 . - 0 ID=cds2253;Parent=gene2294;Dbxref=Genbank:WP_010930325.1;Name=WP_010930325.1;Note=makes up the distal portion of the flagellar basal body rod;gbkey=CDS;gene=flgG;product=flagellar basal body rod protein FlgG;protein_id=WP_010930325.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2384358 2385122 . - . ID=gene2295;Name=flgF;gbkey=Gene;gene=flgF;gene_biotype=protein_coding;locus_tag=RD04_RS11480;old_locus_tag=RD04_11460 NZ_CP010961.1 Protein Homology CDS 2384358 2385122 . - 0 ID=cds2254;Parent=gene2295;Dbxref=Genbank:WP_003817181.1;Name=WP_003817181.1;Note=FlgF%2C with FlgB and C%2C makes up the proximal portion of the flagellar basal body rod;gbkey=CDS;gene=flgF;product=flagellar basal body rod protein FlgF;protein_id=WP_003817181.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2385161 2386582 . - . ID=gene2296;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=RD04_RS11485;old_locus_tag=RD04_11465 NZ_CP010961.1 Protein Homology CDS 2385161 2386582 . - 0 ID=cds2255;Parent=gene2296;Dbxref=Genbank:WP_003817180.1;Name=WP_003817180.1;Note=the hook connects flagellar basal body to the flagellar filament;gbkey=CDS;gene=flgE;product=flagellar hook protein FlgE;protein_id=WP_003817180.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2386648 2387352 . - . ID=gene2297;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=RD04_RS11490;old_locus_tag=RD04_11470 NZ_CP010961.1 Protein Homology CDS 2386648 2387352 . - 0 ID=cds2256;Parent=gene2297;Dbxref=Genbank:WP_010930324.1;Name=WP_010930324.1;Note=acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod;gbkey=CDS;gene=flgD;product=flagellar basal body rod modification protein FlgD;protein_id=WP_010930324.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2387400 2387819 . - . ID=gene2298;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=RD04_RS11495;old_locus_tag=RD04_11475 NZ_CP010961.1 Protein Homology CDS 2387400 2387819 . - 0 ID=cds2257;Parent=gene2298;Dbxref=Genbank:WP_003817176.1;Name=WP_003817176.1;Note=with FlgF and B makes up the proximal portion of the flagellar basal body rod;gbkey=CDS;gene=flgC;product=flagellar basal body rod protein FlgC;protein_id=WP_003817176.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2387832 2388239 . - . ID=gene2299;Name=RD04_RS11500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11500;old_locus_tag=RD04_11480 NZ_CP010961.1 Protein Homology CDS 2387832 2388239 . - 0 ID=cds2258;Parent=gene2299;Dbxref=Genbank:WP_010930323.1;Name=WP_010930323.1;gbkey=CDS;product=flagellar biosynthesis protein FlgB;protein_id=WP_010930323.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2388423 2389133 . + . ID=gene2300;Name=RD04_RS11505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11505;old_locus_tag=RD04_11485 NZ_CP010961.1 Protein Homology CDS 2388423 2389133 . + 0 ID=cds2259;Parent=gene2300;Dbxref=Genbank:WP_010930322.1;Name=WP_010930322.1;gbkey=CDS;product=flagellar basal body P-ring biosynthesis protein FlgA;protein_id=WP_010930322.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2389260 2389550 . + . ID=gene2301;Name=RD04_RS11510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11510;old_locus_tag=RD04_11490 NZ_CP010961.1 Protein Homology CDS 2389260 2389550 . + 0 ID=cds2260;Parent=gene2301;Dbxref=Genbank:WP_003817172.1;Name=WP_003817172.1;gbkey=CDS;product=flagellar biosynthesis anti-sigma factor FlgM;protein_id=WP_003817172.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2389568 2390050 . + . ID=gene2302;Name=RD04_RS11515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11515;old_locus_tag=RD04_11495 NZ_CP010961.1 Protein Homology CDS 2389568 2390050 . + 0 ID=cds2261;Parent=gene2302;Dbxref=Genbank:WP_003817170.1;Name=WP_003817170.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003817170.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2390068 2392438 . - . ID=gene2303;Name=RD04_RS11520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11520;old_locus_tag=RD04_11500;pseudo=true NZ_CP010961.1 Protein Homology CDS 2390068 2392438 . - 0 ID=cds2262;Parent=gene2303;Note=frameshifted;gbkey=CDS;product=flagellar biosynthesis protein FlhF;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2392435 2394552 . - . ID=gene2304;Name=RD04_RS11525;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11525;old_locus_tag=RD04_11505;pseudo=true NZ_CP010961.1 Protein Homology CDS 2392435 2394552 . - 0 ID=cds2263;Parent=gene2304;Note=internal stop;gbkey=CDS;product=flagellar biosynthesis protein FlhA;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2394556 2395710 . - . ID=gene2305;Name=RD04_RS11530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11530;old_locus_tag=RD04_11510 NZ_CP010961.1 Protein Homology CDS 2394556 2395710 . - 0 ID=cds2264;Parent=gene2305;Dbxref=Genbank:WP_010930321.1;Name=WP_010930321.1;gbkey=CDS;product=flagellar biosynthesis protein FlhB;protein_id=WP_010930321.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2396016 2397032 . + . ID=gene2306;Name=RD04_RS11535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11535;old_locus_tag=RD04_11515 NZ_CP010961.1 Protein Homology CDS 2396016 2397032 . + 0 ID=cds2265;Parent=gene2306;Dbxref=Genbank:WP_010931363.1;Name=WP_010931363.1;gbkey=CDS;product=transposase;protein_id=WP_010931363.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2397279 2398067 . + . ID=gene2307;Name=RD04_RS11540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11540;old_locus_tag=RD04_11520 NZ_CP010961.1 Protein Homology CDS 2397279 2398067 . + 0 ID=cds2266;Parent=gene2307;Dbxref=Genbank:WP_010930319.1;Name=WP_010930319.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_010930319.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2398134 2398814 . + . ID=gene2308;Name=RD04_RS11545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11545;old_locus_tag=RD04_11525 NZ_CP010961.1 Protein Homology CDS 2398134 2398814 . + 0 ID=cds2267;Parent=gene2308;Dbxref=Genbank:WP_003812020.1;Name=WP_003812020.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_003812020.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2398811 2399581 . + . ID=gene2309;Name=RD04_RS11550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11550;old_locus_tag=RD04_11530 NZ_CP010961.1 Protein Homology CDS 2398811 2399581 . + 0 ID=cds2268;Parent=gene2309;Dbxref=Genbank:WP_003812022.1;Name=WP_003812022.1;gbkey=CDS;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_003812022.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2399680 2400630 . + . ID=gene2310;Name=RD04_RS11555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11555;old_locus_tag=RD04_11535 NZ_CP010961.1 Protein Homology CDS 2399680 2400630 . + 0 ID=cds2269;Parent=gene2310;Dbxref=Genbank:WP_010930208.1;Name=WP_010930208.1;gbkey=CDS;product=transposase;protein_id=WP_010930208.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2400686 2401603 . - . ID=gene2311;Name=RD04_RS11560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11560;old_locus_tag=RD04_11540 NZ_CP010961.1 Protein Homology CDS 2400686 2401603 . - 0 ID=cds2270;Parent=gene2311;Dbxref=Genbank:WP_003811401.1;Name=WP_003811401.1;gbkey=CDS;product=2-dehydropantoate 2-reductase;protein_id=WP_003811401.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2401614 2402792 . - . ID=gene2312;Name=RD04_RS11565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11565;old_locus_tag=RD04_11545 NZ_CP010961.1 Protein Homology CDS 2401614 2402792 . - 0 ID=cds2271;Parent=gene2312;Dbxref=Genbank:WP_003811400.1;Name=WP_003811400.1;gbkey=CDS;product=mandelate racemase;protein_id=WP_003811400.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2402812 2403807 . - . ID=gene2313;Name=RD04_RS11570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11570;old_locus_tag=RD04_11550 NZ_CP010961.1 Protein Homology CDS 2402812 2403807 . - 0 ID=cds2272;Parent=gene2313;Dbxref=Genbank:WP_010930318.1;Name=WP_010930318.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930318.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2403977 2405394 . + . ID=gene2314;Name=RD04_RS11575;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11575;old_locus_tag=RD04_11555;pseudo=true NZ_CP010961.1 Protein Homology CDS 2403977 2405394 . + 0 ID=cds2273;Parent=gene2314;Note=frameshifted;gbkey=CDS;product=3-isopropylmalate dehydratase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2405396 2406004 . + . ID=gene2315;Name=RD04_RS11580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11580;old_locus_tag=RD04_11560 NZ_CP010961.1 Protein Homology CDS 2405396 2406004 . + 0 ID=cds2274;Parent=gene2315;Dbxref=Genbank:WP_003811396.1;Name=WP_003811396.1;gbkey=CDS;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_003811396.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2405992 2407032 . + . ID=gene2316;Name=RD04_RS11585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11585;old_locus_tag=RD04_11565 NZ_CP010961.1 Protein Homology CDS 2405992 2407032 . + 0 ID=cds2275;Parent=gene2316;Dbxref=Genbank:WP_003811393.1;Name=WP_003811393.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_003811393.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2407050 2408012 . - . ID=gene2317;Name=RD04_RS11590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11590;old_locus_tag=RD04_11570 NZ_CP010961.1 Protein Homology CDS 2407050 2408012 . - 0 ID=cds2276;Parent=gene2317;Dbxref=Genbank:WP_003811391.1;Name=WP_003811391.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003811391.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2408009 2409202 . - . ID=gene2318;Name=RD04_RS11595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11595;old_locus_tag=RD04_11575 NZ_CP010961.1 Protein Homology CDS 2408009 2409202 . - 0 ID=cds2277;Parent=gene2318;Dbxref=Genbank:WP_003811389.1;Name=WP_003811389.1;gbkey=CDS;product=CoA transferase;protein_id=WP_003811389.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2409199 2409996 . - . ID=gene2319;Name=RD04_RS11600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11600;old_locus_tag=RD04_11580 NZ_CP010961.1 Protein Homology CDS 2409199 2409996 . - 0 ID=cds2278;Parent=gene2319;Dbxref=Genbank:WP_010930317.1;Name=WP_010930317.1;gbkey=CDS;product=citryl-CoA lyase;protein_id=WP_010930317.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2410022 2411008 . - . ID=gene2320;Name=RD04_RS11605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11605;old_locus_tag=RD04_11585 NZ_CP010961.1 Protein Homology CDS 2410022 2411008 . - 0 ID=cds2279;Parent=gene2320;Dbxref=Genbank:WP_014486069.1;Name=WP_014486069.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014486069.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2411027 2413066 . - . ID=gene2321;Name=RD04_RS11610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11610;old_locus_tag=RD04_11590 NZ_CP010961.1 Protein Homology CDS 2411027 2413066 . - 0 ID=cds2280;Parent=gene2321;Dbxref=Genbank:WP_010930316.1;Name=WP_010930316.1;gbkey=CDS;product=acetyl-CoA synthetase;protein_id=WP_010930316.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2413268 2413948 . + . ID=gene2322;Name=RD04_RS11615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11615;old_locus_tag=RD04_11595 NZ_CP010961.1 Protein Homology CDS 2413268 2413948 . + 0 ID=cds2281;Parent=gene2322;Dbxref=Genbank:WP_010930315.1;Name=WP_010930315.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010930315.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2413962 2414873 . - . ID=gene2323;Name=RD04_RS11620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11620;old_locus_tag=RD04_11600 NZ_CP010961.1 Protein Homology CDS 2413962 2414873 . - 0 ID=cds2282;Parent=gene2323;Dbxref=Genbank:WP_010930314.1;Name=WP_010930314.1;gbkey=CDS;product=citrate lyase subunit beta;protein_id=WP_010930314.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2414870 2415448 . - . ID=gene2324;Name=RD04_RS11625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11625;old_locus_tag=RD04_11605 NZ_CP010961.1 Protein Homology CDS 2414870 2415448 . - 0 ID=cds2283;Parent=gene2324;Dbxref=Genbank:WP_003811381.1;Name=WP_003811381.1;gbkey=CDS;product=FMN reductase;protein_id=WP_003811381.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2415587 2416492 . + . ID=gene2325;Name=RD04_RS11630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11630;old_locus_tag=RD04_11610 NZ_CP010961.1 Protein Homology CDS 2415587 2416492 . + 0 ID=cds2284;Parent=gene2325;Dbxref=Genbank:WP_010930313.1;Name=WP_010930313.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930313.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2416500 2419919 . + . ID=gene2326;Name=RD04_RS11635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11635;old_locus_tag=RD04_11615 NZ_CP010961.1 Protein Homology CDS 2416500 2419919 . + 0 ID=cds2285;Parent=gene2326;Dbxref=Genbank:WP_010930312.1;Name=WP_010930312.1;gbkey=CDS;product=nuclease;protein_id=WP_010930312.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2419907 2422507 . - . ID=gene2327;Name=RD04_RS11640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11640;old_locus_tag=RD04_11620 NZ_CP010961.1 Protein Homology CDS 2419907 2422507 . - 0 ID=cds2286;Parent=gene2327;Dbxref=Genbank:WP_010930311.1;Name=WP_010930311.1;gbkey=CDS;product=autotransporter;protein_id=WP_010930311.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2422669 2423437 . - . ID=gene2328;Name=RD04_RS11645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11645;old_locus_tag=RD04_11625;pseudo=true NZ_CP010961.1 Protein Homology CDS 2422669 2423437 . - 0 ID=cds2287;Parent=gene2328;Note=frameshifted;gbkey=CDS;product=NADPH-dependent ferric siderophore reductase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2423463 2424095 . - . ID=gene2329;Name=RD04_RS11650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11650;old_locus_tag=RD04_11630 NZ_CP010961.1 Protein Homology CDS 2423463 2424095 . - 0 ID=cds2288;Parent=gene2329;Dbxref=Genbank:WP_003811375.1;Name=WP_003811375.1;gbkey=CDS;product=PadR family transcriptional regulator;protein_id=WP_003811375.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2424489 2425247 . + . ID=gene2330;Name=RD04_RS11655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11655;old_locus_tag=RD04_11635 NZ_CP010961.1 Protein Homology CDS 2424489 2425247 . + 0 ID=cds2289;Parent=gene2330;Dbxref=Genbank:WP_003811372.1;Name=WP_003811372.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003811372.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2425244 2426446 . + . ID=gene2331;Name=RD04_RS11660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11660;old_locus_tag=RD04_11640 NZ_CP010961.1 Protein Homology CDS 2425244 2426446 . + 0 ID=cds2290;Parent=gene2331;Dbxref=Genbank:WP_003811370.1;Name=WP_003811370.1;gbkey=CDS;product=cardiolipin synthase B;protein_id=WP_003811370.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2426443 2426643 . + . ID=gene2332;Name=RD04_RS11665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11665;old_locus_tag=RD04_11645 NZ_CP010961.1 GeneMarkS+ CDS 2426443 2426643 . + 0 ID=cds2291;Parent=gene2332;Dbxref=Genbank:WP_019249235.1;Name=WP_019249235.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019249235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2426634 2427584 . - . ID=gene2333;Name=RD04_RS11670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11670;old_locus_tag=RD04_11650 NZ_CP010961.1 Protein Homology CDS 2426634 2427584 . - 0 ID=cds2292;Parent=gene2333;Dbxref=Genbank:WP_010930208.1;Name=WP_010930208.1;gbkey=CDS;product=transposase;protein_id=WP_010930208.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2427677 2428438 . + . ID=gene2334;Name=RD04_RS11675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11675;old_locus_tag=RD04_11655;partial=true;pseudo=true;start_range=.,2427677 NZ_CP010961.1 Protein Homology CDS 2427677 2428438 . + 0 ID=cds2293;Parent=gene2334;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2427677;transl_table=11 NZ_CP010961.1 RefSeq gene 2428492 2429637 . + . ID=gene2335;Name=RD04_RS11680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11680;old_locus_tag=RD04_11660 NZ_CP010961.1 Protein Homology CDS 2428492 2429637 . + 0 ID=cds2294;Parent=gene2335;Dbxref=Genbank:WP_010930310.1;Name=WP_010930310.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930310.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2429624 2430379 . + . ID=gene2336;Name=RD04_RS11685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11685;old_locus_tag=RD04_11665 NZ_CP010961.1 Protein Homology CDS 2429624 2430379 . + 0 ID=cds2295;Parent=gene2336;Dbxref=Genbank:WP_019247449.1;Name=WP_019247449.1;gbkey=CDS;product=permease;protein_id=WP_019247449.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2430496 2430675 . + . ID=gene2337;Name=RD04_RS11690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11690;old_locus_tag=RD04_11670 NZ_CP010961.1 Protein Homology CDS 2430496 2430675 . + 0 ID=cds2296;Parent=gene2337;Dbxref=Genbank:WP_003811361.1;Name=WP_003811361.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003811361.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2430741 2431643 . - . ID=gene2338;Name=RD04_RS11695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11695;old_locus_tag=RD04_11675 NZ_CP010961.1 GeneMarkS+ CDS 2430741 2431643 . - 0 ID=cds2297;Parent=gene2338;Dbxref=Genbank:WP_041166317.1;Name=WP_041166317.1;gbkey=CDS;product=integrase;protein_id=WP_041166317.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2431814 2432956 . + . ID=gene2339;Name=RD04_RS11700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11700;old_locus_tag=RD04_11680 NZ_CP010961.1 GeneMarkS+ CDS 2431814 2432956 . + 0 ID=cds2298;Parent=gene2339;Dbxref=Genbank:WP_024000147.1;Name=WP_024000147.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024000147.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2432950 2434482 . + . ID=gene2340;Name=RD04_RS11705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11705;old_locus_tag=RD04_11685 NZ_CP010961.1 Protein Homology CDS 2432950 2434482 . + 0 ID=cds2299;Parent=gene2340;Dbxref=Genbank:WP_019248239.1;Name=WP_019248239.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248239.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2434494 2437835 . + . ID=gene2341;Name=RD04_RS11710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11710;old_locus_tag=RD04_11690 NZ_CP010961.1 Protein Homology CDS 2434494 2437835 . + 0 ID=cds2300;Parent=gene2341;Dbxref=Genbank:WP_010930308.1;Name=WP_010930308.1;gbkey=CDS;product=alpha-amylase;protein_id=WP_010930308.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2437832 2440027 . + . ID=gene2342;Name=RD04_RS11715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11715;old_locus_tag=RD04_11695 NZ_CP010961.1 Protein Homology CDS 2437832 2440027 . + 0 ID=cds2301;Parent=gene2342;Dbxref=Genbank:WP_010930307.1;Name=WP_010930307.1;Note=catalyzes the transfer of a segment of a 1%2C4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain;gbkey=CDS;product=1%2C4-alpha-glucan-branching protein;protein_id=WP_010930307.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2440032 2442152 . + . ID=gene2343;Name=RD04_RS11720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11720;old_locus_tag=RD04_11700 NZ_CP010961.1 Protein Homology CDS 2440032 2442152 . + 0 ID=cds2302;Parent=gene2343;Dbxref=Genbank:WP_010930306.1;Name=WP_010930306.1;gbkey=CDS;product=glycogen debranching enzyme;protein_id=WP_010930306.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2442149 2443903 . + . ID=gene2344;Name=RD04_RS11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11725;old_locus_tag=RD04_11705 NZ_CP010961.1 Protein Homology CDS 2442149 2443903 . + 0 ID=cds2303;Parent=gene2344;Dbxref=Genbank:WP_010930305.1;Name=WP_010930305.1;gbkey=CDS;product=malto-oligosyltrehalose trehalohydrolase;protein_id=WP_010930305.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2443964 2444347 . + . ID=gene2345;Name=RD04_RS11730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11730;old_locus_tag=RD04_11710 NZ_CP010961.1 Protein Homology CDS 2443964 2444347 . + 0 ID=cds2304;Parent=gene2345;Dbxref=Genbank:WP_033469558.1;Name=WP_033469558.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033469558.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2444332 2445273 . + . ID=gene2346;Name=RD04_RS11735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11735;old_locus_tag=RD04_11715 NZ_CP010961.1 GeneMarkS+ CDS 2444332 2445273 . + 0 ID=cds2305;Parent=gene2346;Dbxref=Genbank:WP_019249167.1;Name=WP_019249167.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019249167.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2445270 2447813 . + . ID=gene2347;Name=RD04_RS11740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11740;old_locus_tag=RD04_11720 NZ_CP010961.1 Protein Homology CDS 2445270 2447813 . + 0 ID=cds2306;Parent=gene2347;Dbxref=Genbank:WP_010930304.1;Name=WP_010930304.1;gbkey=CDS;product=malto-oligosyltrehalose synthase;protein_id=WP_010930304.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2447804 2450775 . - . ID=gene2348;Name=RD04_RS11745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11745;old_locus_tag=RD04_11725;pseudo=true NZ_CP010961.1 Protein Homology CDS 2447804 2450775 . - 0 ID=cds2307;Parent=gene2348;Note=frameshifted;gbkey=CDS;product=ATPase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2450876 2451730 . - . ID=gene2349;Name=pdxK;gbkey=Gene;gene=pdxK;gene_biotype=protein_coding;locus_tag=RD04_RS11750;old_locus_tag=RD04_11730 NZ_CP010961.1 Protein Homology CDS 2450876 2451730 . - 0 ID=cds2308;Parent=gene2349;Dbxref=Genbank:WP_010930303.1;Name=WP_010930303.1;Note=catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal;gbkey=CDS;gene=pdxK;product=pyridoxine kinase;protein_id=WP_010930303.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2451727 2452542 . - . ID=gene2350;Name=RD04_RS11755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11755;old_locus_tag=RD04_11735 NZ_CP010961.1 Protein Homology CDS 2451727 2452542 . - 0 ID=cds2309;Parent=gene2350;Dbxref=Genbank:WP_003811326.1;Name=WP_003811326.1;gbkey=CDS;product=YggS family pyridoxal phosphate enzyme;protein_id=WP_003811326.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2452602 2453933 . + . ID=gene2351;Name=RD04_RS11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11760;old_locus_tag=RD04_11740 NZ_CP010961.1 Protein Homology CDS 2452602 2453933 . + 0 ID=cds2310;Parent=gene2351;Dbxref=Genbank:WP_010930302.1;Name=WP_010930302.1;Note=regulator of the ptsHI/crr operon;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010930302.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2453972 2454478 . + . ID=gene2352;Name=RD04_RS11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11765;old_locus_tag=RD04_11745 NZ_CP010961.1 Protein Homology CDS 2453972 2454478 . + 0 ID=cds2311;Parent=gene2352;Dbxref=Genbank:WP_003811324.1;Name=WP_003811324.1;gbkey=CDS;product=membrane protein;protein_id=WP_003811324.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2454718 2455071 . + . ID=gene2353;Name=RD04_RS11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11770;old_locus_tag=RD04_11750 NZ_CP010961.1 Protein Homology CDS 2454718 2455071 . + 0 ID=cds2312;Parent=gene2353;Dbxref=Genbank:WP_019247534.1;Name=WP_019247534.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247534.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2455143 2455568 . + . ID=gene2354;Name=RD04_RS11775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11775;old_locus_tag=RD04_11755 NZ_CP010961.1 Protein Homology CDS 2455143 2455568 . + 0 ID=cds2313;Parent=gene2354;Dbxref=Genbank:WP_003811322.1;Name=WP_003811322.1;gbkey=CDS;product=universal stress protein;protein_id=WP_003811322.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2455601 2456488 . + . ID=gene2355;Name=RD04_RS11780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11780;old_locus_tag=RD04_11760 NZ_CP010961.1 Protein Homology CDS 2455601 2456488 . + 0 ID=cds2314;Parent=gene2355;Dbxref=Genbank:WP_019247533.1;Name=WP_019247533.1;gbkey=CDS;product=aldo/keto reductase;protein_id=WP_019247533.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2456491 2456814 . - . ID=gene2356;Name=RD04_RS11785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11785;old_locus_tag=RD04_11765 NZ_CP010961.1 Protein Homology CDS 2456491 2456814 . - 0 ID=cds2315;Parent=gene2356;Dbxref=Genbank:WP_010930301.1;Name=WP_010930301.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930301.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2456811 2457846 . - . ID=gene2357;Name=RD04_RS11790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11790;old_locus_tag=RD04_11770;pseudo=true NZ_CP010961.1 Protein Homology CDS 2456811 2457846 . - 0 ID=cds2316;Parent=gene2357;Note=frameshifted;gbkey=CDS;product=peptidase M4;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2458051 2458455 . + . ID=gene2358;Name=RD04_RS11795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11795;old_locus_tag=RD04_11775 NZ_CP010961.1 Protein Homology CDS 2458051 2458455 . + 0 ID=cds2317;Parent=gene2358;Dbxref=Genbank:WP_010930300.1;Name=WP_010930300.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930300.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2458637 2459068 . + . ID=gene2359;Name=RD04_RS11800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11800;old_locus_tag=RD04_11780 NZ_CP010961.1 Protein Homology CDS 2458637 2459068 . + 0 ID=cds2318;Parent=gene2359;Dbxref=Genbank:WP_019247530.1;Name=WP_019247530.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247530.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2459301 2459708 . + . ID=gene2360;Name=RD04_RS11805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11805;old_locus_tag=RD04_11785 NZ_CP010961.1 GeneMarkS+ CDS 2459301 2459708 . + 0 ID=cds2319;Parent=gene2360;Dbxref=Genbank:WP_023852768.1;Name=WP_023852768.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023852768.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2459807 2460757 . + . ID=gene2361;Name=RD04_RS11810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11810;old_locus_tag=RD04_11790 NZ_CP010961.1 Protein Homology CDS 2459807 2460757 . + 0 ID=cds2320;Parent=gene2361;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2460850 2461389 . + . ID=gene2362;Name=RD04_RS11815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11815;old_locus_tag=RD04_11795 NZ_CP010961.1 Protein Homology CDS 2460850 2461389 . + 0 ID=cds2321;Parent=gene2362;Dbxref=Genbank:WP_003811316.1;Name=WP_003811316.1;gbkey=CDS;product=peroxiredoxin;protein_id=WP_003811316.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2461496 2461840 . - . ID=gene2363;Name=RD04_RS11820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11820;old_locus_tag=RD04_11800 NZ_CP010961.1 Protein Homology CDS 2461496 2461840 . - 0 ID=cds2322;Parent=gene2363;Dbxref=Genbank:WP_023852799.1;Name=WP_023852799.1;gbkey=CDS;product=arsenate reductase (glutaredoxin);protein_id=WP_023852799.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2461898 2463346 . - . ID=gene2364;Name=RD04_RS11825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11825;old_locus_tag=RD04_11805 NZ_CP010961.1 Protein Homology CDS 2461898 2463346 . - 0 ID=cds2323;Parent=gene2364;Dbxref=Genbank:WP_010930298.1;Name=WP_010930298.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010930298.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2463534 2463860 . - . ID=gene2365;Name=RD04_RS11830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11830;old_locus_tag=RD04_11810 NZ_CP010961.1 Protein Homology CDS 2463534 2463860 . - 0 ID=cds2324;Parent=gene2365;Dbxref=Genbank:WP_029443804.1;Name=WP_029443804.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_029443804.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2464045 2465473 . + . ID=gene2366;Name=RD04_RS11835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11835;old_locus_tag=RD04_11815;pseudo=true NZ_CP010961.1 Protein Homology CDS 2464045 2465473 . + 0 ID=cds2325;Parent=gene2366;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2465497 2466675 . + . ID=gene2367;Name=RD04_RS11840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11840;old_locus_tag=RD04_11820 NZ_CP010961.1 Protein Homology CDS 2465497 2466675 . + 0 ID=cds2326;Parent=gene2367;Dbxref=Genbank:WP_010930297.1;Name=WP_010930297.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930297.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2466758 2467258 . + . ID=gene2368;Name=RD04_RS11845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11845;old_locus_tag=RD04_11825 NZ_CP010961.1 Protein Homology CDS 2466758 2467258 . + 0 ID=cds2327;Parent=gene2368;Dbxref=Genbank:WP_003811310.1;Name=WP_003811310.1;gbkey=CDS;product=glutathione peroxidase;protein_id=WP_003811310.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2467368 2468069 . + . ID=gene2369;Name=RD04_RS11850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11850;old_locus_tag=RD04_11830 NZ_CP010961.1 Protein Homology CDS 2467368 2468069 . + 0 ID=cds2328;Parent=gene2369;Dbxref=Genbank:WP_010930296.1;Name=WP_010930296.1;gbkey=CDS;product=thiol:disulfide oxidoreductase;protein_id=WP_010930296.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2468081 2468545 . + . ID=gene2370;Name=RD04_RS11855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11855;old_locus_tag=RD04_11835 NZ_CP010961.1 Protein Homology CDS 2468081 2468545 . + 0 ID=cds2329;Parent=gene2370;Dbxref=Genbank:WP_010930295.1;Name=WP_010930295.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_010930295.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2468560 2468835 . + . ID=gene2371;Name=RD04_RS11860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11860;old_locus_tag=RD04_11840 NZ_CP010961.1 Protein Homology CDS 2468560 2468835 . + 0 ID=cds2330;Parent=gene2371;Dbxref=Genbank:WP_023852802.1;Name=WP_023852802.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023852802.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2468832 2469608 . + . ID=gene2372;Name=RD04_RS11865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11865;old_locus_tag=RD04_11845 NZ_CP010961.1 Protein Homology CDS 2468832 2469608 . + 0 ID=cds2331;Parent=gene2372;Dbxref=Genbank:WP_003811306.1;Name=WP_003811306.1;gbkey=CDS;product=lipoate--protein ligase A;protein_id=WP_003811306.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2469637 2470464 . + . ID=gene2373;Name=RD04_RS11870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11870;old_locus_tag=RD04_11850 NZ_CP010961.1 Protein Homology CDS 2469637 2470464 . + 0 ID=cds2332;Parent=gene2373;Dbxref=Genbank:WP_010930294.1;Name=WP_010930294.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010930294.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2470590 2471060 . + . ID=gene2374;Name=RD04_RS11875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11875;old_locus_tag=RD04_11855 NZ_CP010961.1 Protein Homology CDS 2470590 2471060 . + 0 ID=cds2333;Parent=gene2374;Dbxref=Genbank:WP_010930293.1;Name=WP_010930293.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930293.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2471187 2472080 . + . ID=gene2375;Name=RD04_RS11880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11880;old_locus_tag=RD04_11860 NZ_CP010961.1 Protein Homology CDS 2471187 2472080 . + 0 ID=cds2334;Parent=gene2375;Dbxref=Genbank:WP_003811301.1;Name=WP_003811301.1;gbkey=CDS;product=phosphatidylserine decarboxylase proenzyme;protein_id=WP_003811301.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2472128 2473309 . + . ID=gene2376;Name=RD04_RS11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11885;old_locus_tag=RD04_11865 NZ_CP010961.1 Protein Homology CDS 2472128 2473309 . + 0 ID=cds2335;Parent=gene2376;Dbxref=Genbank:WP_010930292.1;Name=WP_010930292.1;gbkey=CDS;product=alpha-hydroxy-acid oxidizing enzyme;protein_id=WP_010930292.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2473322 2474137 . - . ID=gene2377;Name=RD04_RS11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11890;old_locus_tag=RD04_11870 NZ_CP010961.1 Protein Homology CDS 2473322 2474137 . - 0 ID=cds2336;Parent=gene2377;Dbxref=Genbank:WP_003811298.1;Name=WP_003811298.1;gbkey=CDS;product=exported protein;protein_id=WP_003811298.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2474271 2474798 . - . ID=gene2378;Name=RD04_RS11895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11895;old_locus_tag=RD04_11875 NZ_CP010961.1 Protein Homology CDS 2474271 2474798 . - 0 ID=cds2337;Parent=gene2378;Dbxref=Genbank:WP_010930291.1;Name=WP_010930291.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930291.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2474795 2475292 . - . ID=gene2379;Name=RD04_RS11900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11900;old_locus_tag=RD04_11880 NZ_CP010961.1 Protein Homology CDS 2474795 2475292 . - 0 ID=cds2338;Parent=gene2379;Dbxref=Genbank:WP_003811295.1;Name=WP_003811295.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003811295.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2475440 2475817 . + . ID=gene2380;Name=RD04_RS11905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11905;old_locus_tag=RD04_11885 NZ_CP010961.1 Protein Homology CDS 2475440 2475817 . + 0 ID=cds2339;Parent=gene2380;Dbxref=Genbank:WP_003811293.1;Name=WP_003811293.1;gbkey=CDS;product=membrane protein;protein_id=WP_003811293.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2475775 2476059 . + . ID=gene2381;Name=RD04_RS11910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11910;old_locus_tag=RD04_11890 NZ_CP010961.1 GeneMarkS+ CDS 2475775 2476059 . + 0 ID=cds2340;Parent=gene2381;Dbxref=Genbank:WP_023995013.1;Name=WP_023995013.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023995013.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2476039 2476941 . - . ID=gene2382;Name=RD04_RS11915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11915;old_locus_tag=RD04_11895 NZ_CP010961.1 GeneMarkS+ CDS 2476039 2476941 . - 0 ID=cds2341;Parent=gene2382;Dbxref=Genbank:WP_039250369.1;Name=WP_039250369.1;gbkey=CDS;product=integrase;protein_id=WP_039250369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2477088 2477699 . - . ID=gene2383;Name=RD04_RS11920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11920;old_locus_tag=RD04_11900 NZ_CP010961.1 Protein Homology CDS 2477088 2477699 . - 0 ID=cds2342;Parent=gene2383;Dbxref=Genbank:WP_003811244.1;Name=WP_003811244.1;gbkey=CDS;product=alpha/beta hydrolase;protein_id=WP_003811244.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2477934 2479061 . + . ID=gene2384;Name=RD04_RS11925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11925;old_locus_tag=RD04_11905 NZ_CP010961.1 Protein Homology CDS 2477934 2479061 . + 0 ID=cds2343;Parent=gene2384;Dbxref=Genbank:WP_010930290.1;Name=WP_010930290.1;Note=with LivFGHM is involved in the high affinity leucine transport;gbkey=CDS;product=branched chain amino acid ABC transporter substrate-binding protein;protein_id=WP_010930290.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2479172 2480260 . - . ID=gene2385;Name=ugpC;gbkey=Gene;gene=ugpC;gene_biotype=protein_coding;locus_tag=RD04_RS11930;old_locus_tag=RD04_11910 NZ_CP010961.1 Protein Homology CDS 2479172 2480260 . - 0 ID=cds2344;Parent=gene2385;Dbxref=Genbank:WP_010930289.1;Name=WP_010930289.1;Note=part of the UgpABCE glycerol-3-phosphate uptake system;gbkey=CDS;gene=ugpC;product=sn-glycerol-3-phosphate import ATP-binding protein UgpC;protein_id=WP_010930289.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2480313 2481164 . - . ID=gene2386;Name=RD04_RS11935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11935;old_locus_tag=RD04_11915 NZ_CP010961.1 Protein Homology CDS 2480313 2481164 . - 0 ID=cds2345;Parent=gene2386;Dbxref=Genbank:WP_003811259.1;Name=WP_003811259.1;Note=with UgpABC is involved in uptake of glycerol-3-phosphate;gbkey=CDS;product=glycerol-3-phosphate transporter membrane protein;protein_id=WP_003811259.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2481184 2482065 . - . ID=gene2387;Name=RD04_RS11940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11940;old_locus_tag=RD04_11920 NZ_CP010961.1 Protein Homology CDS 2481184 2482065 . - 0 ID=cds2346;Parent=gene2387;Dbxref=Genbank:WP_003811262.1;Name=WP_003811262.1;Note=with UgpEC is involved in the uptake of glycerol-3-phosphate;gbkey=CDS;product=glycerol-3-phosphate transporter permease;protein_id=WP_003811262.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2482242 2483555 . - . ID=gene2388;Name=RD04_RS11945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11945;old_locus_tag=RD04_11925 NZ_CP010961.1 Protein Homology CDS 2482242 2483555 . - 0 ID=cds2347;Parent=gene2388;Dbxref=Genbank:WP_010930288.1;Name=WP_010930288.1;Note=with UgpACE is involved in the uptake of glycerol-3-phosphate;gbkey=CDS;product=glycerol-3-phosphate ABC transporter substrate-binding protein;protein_id=WP_010930288.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2483766 2484599 . + . ID=gene2389;Name=RD04_RS11950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11950;old_locus_tag=RD04_11930 NZ_CP010961.1 Protein Homology CDS 2483766 2484599 . + 0 ID=cds2348;Parent=gene2389;Dbxref=Genbank:WP_003811267.1;Name=WP_003811267.1;gbkey=CDS;product=pyrroline-5-carboxylate reductase;protein_id=WP_003811267.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2484596 2485177 . + . ID=gene2390;Name=RD04_RS11955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11955;old_locus_tag=RD04_11935 NZ_CP010961.1 Protein Homology CDS 2484596 2485177 . + 0 ID=cds2349;Parent=gene2390;Dbxref=Genbank:WP_010930287.1;Name=WP_010930287.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930287.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2485531 2486481 . + . ID=gene2391;Name=RD04_RS11960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11960;old_locus_tag=RD04_11940 NZ_CP010961.1 Protein Homology CDS 2485531 2486481 . + 0 ID=cds2350;Parent=gene2391;Dbxref=Genbank:WP_005015810.1;Name=WP_005015810.1;gbkey=CDS;product=transposase;protein_id=WP_005015810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2486497 2487612 . + . ID=gene2392;Name=RD04_RS11965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11965;old_locus_tag=RD04_11945 NZ_CP010961.1 Protein Homology CDS 2486497 2487612 . + 0 ID=cds2351;Parent=gene2392;Dbxref=Genbank:WP_010930286.1;Name=WP_010930286.1;Note=with LivFGHM is involved in the high affinity leucine transport;gbkey=CDS;product=branched chain amino acid ABC transporter substrate-binding protein;protein_id=WP_010930286.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2487715 2488641 . + . ID=gene2393;Name=RD04_RS11970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11970;old_locus_tag=RD04_11950 NZ_CP010961.1 Protein Homology CDS 2487715 2488641 . + 0 ID=cds2352;Parent=gene2393;Dbxref=Genbank:WP_003811272.1;Name=WP_003811272.1;Note=LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter;gbkey=CDS;product=branched-chain amino acid transporter permease subunit LivH;protein_id=WP_003811272.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2488641 2489879 . + . ID=gene2394;Name=livM;gbkey=Gene;gene=livM;gene_biotype=protein_coding;locus_tag=RD04_RS11975;old_locus_tag=RD04_11955 NZ_CP010961.1 Protein Homology CDS 2488641 2489879 . + 0 ID=cds2353;Parent=gene2394;Dbxref=Genbank:WP_010930285.1;Name=WP_010930285.1;Note=Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livM;product=branched-chain amino acid ABC transporter permease;protein_id=WP_010930285.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2489876 2490643 . + . ID=gene2395;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=RD04_RS11980;old_locus_tag=RD04_11960 NZ_CP010961.1 Protein Homology CDS 2489876 2490643 . + 0 ID=cds2354;Parent=gene2395;Dbxref=Genbank:WP_003811277.1;Name=WP_003811277.1;Note=Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livG;product=ABC transporter ATP-binding protein;protein_id=WP_003811277.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2490644 2491345 . + . ID=gene2396;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=RD04_RS11985;old_locus_tag=RD04_11965 NZ_CP010961.1 Protein Homology CDS 2490644 2491345 . + 0 ID=cds2355;Parent=gene2396;Dbxref=Genbank:WP_010930284.1;Name=WP_010930284.1;Note=with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livF;product=ABC transporter ATP-binding protein;protein_id=WP_010930284.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2491427 2491873 . - . ID=gene2397;Name=RD04_RS11990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS11990;old_locus_tag=RD04_11970 NZ_CP010961.1 Protein Homology CDS 2491427 2491873 . - 0 ID=cds2356;Parent=gene2397;Dbxref=Genbank:WP_019247793.1;Name=WP_019247793.1;gbkey=CDS;product=glutamate racemase;protein_id=WP_019247793.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2491764 2492766 . + . ID=gene2398;Name=RD04_RS11995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS11995;old_locus_tag=RD04_11975;partial=true;pseudo=true;start_range=.,2491764 NZ_CP010961.1 Protein Homology CDS 2491764 2492766 . + 0 ID=cds2357;Parent=gene2398;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=oxidoreductase;pseudo=true;start_range=.,2491764;transl_table=11 NZ_CP010961.1 RefSeq gene 2492763 2493401 . + . ID=gene2399;Name=RD04_RS12000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12000;old_locus_tag=RD04_11980 NZ_CP010961.1 Protein Homology CDS 2492763 2493401 . + 0 ID=cds2358;Parent=gene2399;Dbxref=Genbank:WP_010930283.1;Name=WP_010930283.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_010930283.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2493412 2494068 . - . ID=gene2400;Name=RD04_RS12005;end_range=2494068,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12005;old_locus_tag=RD04_11985;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2493412 2494068 . - 0 ID=cds2359;Parent=gene2400;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=2494068,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2494170 2495120 . + . ID=gene2401;Name=RD04_RS12010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12010;old_locus_tag=RD04_11990 NZ_CP010961.1 Protein Homology CDS 2494170 2495120 . + 0 ID=cds2360;Parent=gene2401;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2495117 2496331 . - . ID=gene2402;Name=RD04_RS12015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12015;old_locus_tag=RD04_11995 NZ_CP010961.1 Protein Homology CDS 2495117 2496331 . - 0 ID=cds2361;Parent=gene2402;Dbxref=Genbank:WP_010930282.1;Name=WP_010930282.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930282.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2496334 2498649 . - . ID=gene2403;Name=RD04_RS12020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12020;old_locus_tag=RD04_12000 NZ_CP010961.1 Protein Homology CDS 2496334 2498649 . - 0 ID=cds2362;Parent=gene2403;Dbxref=Genbank:WP_010930281.1;Name=WP_010930281.1;gbkey=CDS;product=DNA topoisomerase IV subunit A;protein_id=WP_010930281.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2498667 2499275 . - . ID=gene2404;Name=RD04_RS12025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12025;old_locus_tag=RD04_12005 NZ_CP010961.1 Protein Homology CDS 2498667 2499275 . - 0 ID=cds2363;Parent=gene2404;Dbxref=Genbank:WP_010930280.1;Name=WP_010930280.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930280.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2499275 2501287 . - . ID=gene2405;Name=RD04_RS12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12030;old_locus_tag=RD04_12010 NZ_CP010961.1 Protein Homology CDS 2499275 2501287 . - 0 ID=cds2364;Parent=gene2405;Dbxref=Genbank:WP_047122788.1;Name=WP_047122788.1;gbkey=CDS;product=DNA topoisomerase IV subunit B;protein_id=WP_047122788.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2501529 2501855 . + . ID=gene2406;Name=RD04_RS12035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12035;old_locus_tag=RD04_12015 NZ_CP010961.1 Protein Homology CDS 2501529 2501855 . + 0 ID=cds2365;Parent=gene2406;Dbxref=Genbank:WP_023852918.1;Name=WP_023852918.1;gbkey=CDS;product=thiol reductase thioredoxin;protein_id=WP_023852918.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2501968 2503224 . + . ID=gene2407;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=RD04_RS12040;old_locus_tag=RD04_12020 NZ_CP010961.1 Protein Homology CDS 2501968 2503224 . + 0 ID=cds2366;Parent=gene2407;Dbxref=Genbank:WP_003810577.1;Name=WP_003810577.1;Note=An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes;gbkey=CDS;gene=rho;product=transcription termination factor Rho;protein_id=WP_003810577.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2503291 2506964 . - . ID=gene2408;Name=RD04_RS12045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12045;old_locus_tag=RD04_12025;pseudo=true NZ_CP010961.1 Protein Homology CDS 2503291 2506964 . - 0 ID=cds2367;Parent=gene2408;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2506998 2509823 . + . ID=gene2409;Name=RD04_RS12050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12050;old_locus_tag=RD04_12030 NZ_CP010961.1 Protein Homology CDS 2506998 2509823 . + 0 ID=cds2368;Parent=gene2409;Dbxref=Genbank:WP_023852880.1;Name=WP_023852880.1;gbkey=CDS;product=bifunctional glutamine synthetase adenylyltransferase/deadenyltransferase;protein_id=WP_023852880.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2509859 2510518 . + . ID=gene2410;Name=RD04_RS12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12055;old_locus_tag=RD04_12035 NZ_CP010961.1 Protein Homology CDS 2509859 2510518 . + 0 ID=cds2369;Parent=gene2410;Dbxref=Genbank:WP_003810571.1;Name=WP_003810571.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003810571.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2510656 2512047 . - . ID=gene2411;Name=RD04_RS12060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12060;old_locus_tag=RD04_12040 NZ_CP010961.1 Protein Homology CDS 2510656 2512047 . - 0 ID=cds2370;Parent=gene2411;Dbxref=Genbank:WP_010930277.1;Name=WP_010930277.1;gbkey=CDS;product=L-serine ammonia-lyase;protein_id=WP_010930277.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2512215 2513876 . + . ID=gene2412;Name=RD04_RS12065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12065;old_locus_tag=RD04_12045 NZ_CP010961.1 Protein Homology CDS 2512215 2513876 . + 0 ID=cds2371;Parent=gene2412;Dbxref=Genbank:WP_010930276.1;Name=WP_010930276.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930276.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2513910 2514698 . - . ID=gene2413;Name=RD04_RS12070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12070;old_locus_tag=RD04_12050 NZ_CP010961.1 Protein Homology CDS 2513910 2514698 . - 0 ID=cds2372;Parent=gene2413;Dbxref=Genbank:WP_010930275.1;Name=WP_010930275.1;gbkey=CDS;product=carboxymethylenebutenolidase;protein_id=WP_010930275.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2514753 2515589 . - . ID=gene2414;Name=RD04_RS12075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12075;old_locus_tag=RD04_12055 NZ_CP010961.1 Protein Homology CDS 2514753 2515589 . - 0 ID=cds2373;Parent=gene2414;Dbxref=Genbank:WP_010930274.1;Name=WP_010930274.1;gbkey=CDS;product=ZIP family metal transporter;protein_id=WP_010930274.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2515700 2518414 . - . ID=gene2415;Name=RD04_RS12080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12080;old_locus_tag=RD04_12060 NZ_CP010961.1 Protein Homology CDS 2515700 2518414 . - 0 ID=cds2374;Parent=gene2415;Dbxref=Genbank:WP_010930273.1;Name=WP_010930273.1;gbkey=CDS;product=DNA polymerase I;protein_id=WP_010930273.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2518467 2519096 . + . ID=gene2416;Name=RD04_RS12085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12085;old_locus_tag=RD04_12065 NZ_CP010961.1 Protein Homology CDS 2518467 2519096 . + 0 ID=cds2375;Parent=gene2416;Dbxref=Genbank:WP_010930272.1;Name=WP_010930272.1;gbkey=CDS;product=Rossman fold protein%2C TIGR00730 family;protein_id=WP_010930272.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2519248 2519652 . + . ID=gene2417;Name=RD04_RS12090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12090;old_locus_tag=RD04_12070 NZ_CP010961.1 Protein Homology CDS 2519248 2519652 . + 0 ID=cds2376;Parent=gene2417;Dbxref=Genbank:WP_003818640.1;Name=WP_003818640.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003818640.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2519649 2520374 . + . ID=gene2418;Name=RD04_RS12095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12095;old_locus_tag=RD04_12075 NZ_CP010961.1 Protein Homology CDS 2519649 2520374 . + 0 ID=cds2377;Parent=gene2418;Dbxref=Genbank:WP_010928248.1;Name=WP_010928248.1;gbkey=CDS;product=toxin;protein_id=WP_010928248.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2520445 2522265 . - . ID=gene2419;Name=RD04_RS12100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12100;old_locus_tag=RD04_12080 NZ_CP010961.1 Protein Homology CDS 2520445 2522265 . - 0 ID=cds2378;Parent=gene2419;Dbxref=Genbank:WP_003818637.1;Name=WP_003818637.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_003818637.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2522282 2523016 . - . ID=gene2420;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=RD04_RS12105;old_locus_tag=RD04_12085 NZ_CP010961.1 Protein Homology CDS 2522282 2523016 . - 0 ID=cds2379;Parent=gene2420;Dbxref=Genbank:WP_003810552.1;Name=WP_003810552.1;Note=catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs;gbkey=CDS;gene=truB;product=tRNA pseudouridine(55) synthase TruB;protein_id=WP_003810552.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2523061 2523462 . - . ID=gene2421;Name=RD04_RS12110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12110;old_locus_tag=RD04_12090 NZ_CP010961.1 Protein Homology CDS 2523061 2523462 . - 0 ID=cds2380;Parent=gene2421;Dbxref=Genbank:WP_003818636.1;Name=WP_003818636.1;gbkey=CDS;product=ribosome-binding factor A;protein_id=WP_003818636.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2523490 2526483 . - . ID=gene2422;Name=RD04_RS12115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12115;old_locus_tag=RD04_12095 NZ_CP010961.1 Protein Homology CDS 2523490 2526483 . - 0 ID=cds2381;Parent=gene2422;Dbxref=Genbank:WP_010930271.1;Name=WP_010930271.1;gbkey=CDS;product=translation initiation factor IF-2;protein_id=WP_010930271.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2526560 2528038 . - . ID=gene2423;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=RD04_RS12120;old_locus_tag=RD04_12100 NZ_CP010961.1 Protein Homology CDS 2526560 2528038 . - 0 ID=cds2382;Parent=gene2423;Dbxref=Genbank:WP_003810546.1;Name=WP_003810546.1;Note=modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination;gbkey=CDS;gene=nusA;product=N utilization substance protein A;protein_id=WP_003810546.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2528035 2528541 . - . ID=gene2424;Name=RD04_RS12125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12125;old_locus_tag=RD04_12105 NZ_CP010961.1 Protein Homology CDS 2528035 2528541 . - 0 ID=cds2383;Parent=gene2424;Dbxref=Genbank:WP_003810544.1;Name=WP_003810544.1;gbkey=CDS;product=ribosome maturation factor;protein_id=WP_003810544.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2529004 2530752 . - . ID=gene2425;Name=RD04_RS12130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12130;old_locus_tag=RD04_12110 NZ_CP010961.1 Protein Homology CDS 2529004 2530752 . - 0 ID=cds2384;Parent=gene2425;Dbxref=Genbank:WP_023852916.1;Name=WP_023852916.1;gbkey=CDS;product=23S rRNA pseudouridylate synthase B;protein_id=WP_023852916.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2530788 2531876 . - . ID=gene2426;Name=RD04_RS12135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12135;old_locus_tag=RD04_12115 NZ_CP010961.1 Protein Homology CDS 2530788 2531876 . - 0 ID=cds2385;Parent=gene2426;Dbxref=Genbank:WP_010930269.1;Name=WP_010930269.1;gbkey=CDS;product=SMC-Scp complex subunit ScpB;protein_id=WP_010930269.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2531946 2532022 . + . ID=gene2427;Name=RD04_RS12140;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS12140;old_locus_tag=RD04_12120 NZ_CP010961.1 tRNAscan-SE tRNA 2531946 2532022 . + . ID=rna41;Parent=gene2427;anticodon=(pos:2531980..2531982);gbkey=tRNA;product=tRNA-Met NZ_CP010961.1 tRNAscan-SE exon 2531946 2532022 . + . ID=id46;Parent=rna41;anticodon=(pos:2531980..2531982);gbkey=tRNA;product=tRNA-Met NZ_CP010961.1 RefSeq gene 2532828 2533721 . - . ID=gene2428;Name=RD04_RS12145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12145;old_locus_tag=RD04_12125 NZ_CP010961.1 Protein Homology CDS 2532828 2533721 . - 0 ID=cds2386;Parent=gene2428;Dbxref=Genbank:WP_033446249.1;Name=WP_033446249.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_033446249.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2533844 2534449 . + . ID=gene2429;Name=RD04_RS12150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12150;old_locus_tag=RD04_12130 NZ_CP010961.1 Protein Homology CDS 2533844 2534449 . + 0 ID=cds2387;Parent=gene2429;Dbxref=Genbank:WP_010930267.1;Name=WP_010930267.1;gbkey=CDS;product=nitroreductase family protein;protein_id=WP_010930267.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2534486 2535490 . - . ID=gene2430;Name=RD04_RS12155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12155;old_locus_tag=RD04_12135 NZ_CP010961.1 Protein Homology CDS 2534486 2535490 . - 0 ID=cds2388;Parent=gene2430;Dbxref=Genbank:WP_010930266.1;Name=WP_010930266.1;gbkey=CDS;product=cobalamin biosynthesis protein CobW;protein_id=WP_010930266.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2535699 2536034 . + . ID=gene2431;Name=RD04_RS12160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12160;old_locus_tag=RD04_12140 NZ_CP010961.1 Protein Homology CDS 2535699 2536034 . + 0 ID=cds2389;Parent=gene2431;Dbxref=Genbank:WP_003810529.1;Name=WP_003810529.1;gbkey=CDS;product=cupin;protein_id=WP_003810529.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2536151 2536226 . - . ID=gene2432;Name=RD04_RS12165;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS12165;old_locus_tag=RD04_12145 NZ_CP010961.1 tRNAscan-SE tRNA 2536151 2536226 . - . ID=rna42;Parent=gene2432;anticodon=(pos:complement(2536191..2536193));gbkey=tRNA;product=tRNA-Asn NZ_CP010961.1 tRNAscan-SE exon 2536151 2536226 . - . ID=id47;Parent=rna42;anticodon=(pos:complement(2536191..2536193));gbkey=tRNA;product=tRNA-Asn NZ_CP010961.1 RefSeq gene 2536399 2536474 . + . ID=gene2433;Name=RD04_RS12170;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS12170;old_locus_tag=RD04_12150 NZ_CP010961.1 tRNAscan-SE tRNA 2536399 2536474 . + . ID=rna43;Parent=gene2433;anticodon=(pos:2536432..2536434);gbkey=tRNA;product=tRNA-Thr NZ_CP010961.1 tRNAscan-SE exon 2536399 2536474 . + . ID=id48;Parent=rna43;anticodon=(pos:2536432..2536434);gbkey=tRNA;product=tRNA-Thr NZ_CP010961.1 RefSeq gene 2536524 2537168 . - . ID=gene2434;Name=RD04_RS12175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12175;old_locus_tag=RD04_12155 NZ_CP010961.1 Protein Homology CDS 2536524 2537168 . - 0 ID=cds2390;Parent=gene2434;Dbxref=Genbank:WP_010930265.1;Name=WP_010930265.1;gbkey=CDS;product=maleylacetoacetate isomerase;protein_id=WP_010930265.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2537207 2538184 . - . ID=gene2435;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;locus_tag=RD04_RS12180;old_locus_tag=RD04_12160 NZ_CP010961.1 Protein Homology CDS 2537207 2538184 . - 0 ID=cds2391;Parent=gene2435;Dbxref=Genbank:WP_010930264.1;Name=WP_010930264.1;Note=catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)%3B functions in the nonmevalonate isoprenoid biosynthesis pathway;gbkey=CDS;gene=ispH;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_010930264.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2538184 2538639 . - . ID=gene2436;Name=RD04_RS12185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12185;old_locus_tag=RD04_12165 NZ_CP010961.1 Protein Homology CDS 2538184 2538639 . - 0 ID=cds2392;Parent=gene2436;Dbxref=Genbank:WP_010930263.1;Name=WP_010930263.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_010930263.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2538713 2539390 . + . ID=gene2437;Name=RD04_RS12190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12190;old_locus_tag=RD04_12170 NZ_CP010961.1 Protein Homology CDS 2538713 2539390 . + 0 ID=cds2393;Parent=gene2437;Dbxref=Genbank:WP_010930262.1;Name=WP_010930262.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930262.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2539477 2540106 . + . ID=gene2438;Name=RD04_RS12195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12195;old_locus_tag=RD04_12175 NZ_CP010961.1 Protein Homology CDS 2539477 2540106 . + 0 ID=cds2394;Parent=gene2438;Dbxref=Genbank:WP_003810518.1;Name=WP_003810518.1;gbkey=CDS;product=kynurenine formamidase;protein_id=WP_003810518.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2540134 2540988 . + . ID=gene2439;Name=RD04_RS12200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12200;old_locus_tag=RD04_12180 NZ_CP010961.1 Protein Homology CDS 2540134 2540988 . + 0 ID=cds2395;Parent=gene2439;Dbxref=Genbank:WP_003810516.1;Name=WP_003810516.1;gbkey=CDS;product=tryptophan 2%2C3-dioxygenase;protein_id=WP_003810516.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2541157 2541423 . + . ID=gene2440;Name=rpmE2;gbkey=Gene;gene=rpmE2;gene_biotype=protein_coding;locus_tag=RD04_RS12205;old_locus_tag=RD04_12185 NZ_CP010961.1 Protein Homology CDS 2541157 2541423 . + 0 ID=cds2396;Parent=gene2440;Dbxref=Genbank:WP_003818624.1;Name=WP_003818624.1;Note=RpmE2%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster do not have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome;gbkey=CDS;gene=rpmE2;product=50S ribosomal protein L31 type B;protein_id=WP_003818624.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2541539 2543275 . + . ID=gene2441;Name=RD04_RS12210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12210;old_locus_tag=RD04_12190 NZ_CP010961.1 Protein Homology CDS 2541539 2543275 . + 0 ID=cds2397;Parent=gene2441;Dbxref=Genbank:WP_010930261.1;Name=WP_010930261.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930261.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2543272 2544678 . + . ID=gene2442;Name=RD04_RS12215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12215;old_locus_tag=RD04_12195 NZ_CP010961.1 Protein Homology CDS 2543272 2544678 . + 0 ID=cds2398;Parent=gene2442;Dbxref=Genbank:WP_010930260.1;Name=WP_010930260.1;gbkey=CDS;product=MATE family efflux transporter;protein_id=WP_010930260.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2544752 2544979 . - . ID=gene2443;Name=RD04_RS12220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12220;old_locus_tag=RD04_12200 NZ_CP010961.1 Protein Homology CDS 2544752 2544979 . - 0 ID=cds2399;Parent=gene2443;Dbxref=Genbank:WP_010930259.1;Name=WP_010930259.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930259.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2545138 2545911 . - . ID=gene2444;Name=RD04_RS12225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12225;old_locus_tag=RD04_12205 NZ_CP010961.1 Protein Homology CDS 2545138 2545911 . - 0 ID=cds2400;Parent=gene2444;Dbxref=Genbank:WP_003818618.1;Name=WP_003818618.1;gbkey=CDS;product=membrane protein;protein_id=WP_003818618.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2545934 2547295 . - . ID=gene2445;Name=RD04_RS12230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12230;old_locus_tag=RD04_12210 NZ_CP010961.1 Protein Homology CDS 2545934 2547295 . - 0 ID=cds2401;Parent=gene2445;Dbxref=Genbank:WP_010930258.1;Name=WP_010930258.1;Note=Sms%3B stabilizes the strand-invasion intermediate during the DNA repair%3B involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents;gbkey=CDS;product=DNA repair protein RadA;protein_id=WP_010930258.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2547475 2549136 . + . ID=gene2446;Name=RD04_RS12235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12235;old_locus_tag=RD04_12215 NZ_CP010961.1 Protein Homology CDS 2547475 2549136 . + 0 ID=cds2402;Parent=gene2446;Dbxref=Genbank:WP_047122815.1;Name=WP_047122815.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_047122815.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2549214 2549792 . + . ID=gene2447;Name=RD04_RS12240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12240;old_locus_tag=RD04_12220 NZ_CP010961.1 Protein Homology CDS 2549214 2549792 . + 0 ID=cds2403;Parent=gene2447;Dbxref=Genbank:WP_010926777.1;Name=WP_010926777.1;gbkey=CDS;product=RNA polymerase sigma factor;protein_id=WP_010926777.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2549789 2550691 . - . ID=gene2448;Name=RD04_RS12245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12245;old_locus_tag=RD04_12225 NZ_CP010961.1 GeneMarkS+ CDS 2549789 2550691 . - 0 ID=cds2404;Parent=gene2448;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2550845 2551537 . + . ID=gene2449;Name=RD04_RS12250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12250;old_locus_tag=RD04_12230 NZ_CP010961.1 Protein Homology CDS 2550845 2551537 . + 0 ID=cds2405;Parent=gene2449;Dbxref=Genbank:WP_010930257.1;Name=WP_010930257.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930257.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2551551 2552267 . - . ID=gene2450;Name=RD04_RS12255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12255;old_locus_tag=RD04_12235 NZ_CP010961.1 Protein Homology CDS 2551551 2552267 . - 0 ID=cds2406;Parent=gene2450;Dbxref=Genbank:WP_003810494.1;Name=WP_003810494.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_003810494.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2552419 2553546 . - . ID=gene2451;Name=RD04_RS12260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12260;old_locus_tag=RD04_12240 NZ_CP010961.1 Protein Homology CDS 2552419 2553546 . - 0 ID=cds2407;Parent=gene2451;Dbxref=Genbank:WP_003810492.1;Name=WP_003810492.1;Note=converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer;gbkey=CDS;product=alanine racemase;protein_id=WP_003810492.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2553675 2554505 . + . ID=gene2452;Name=RD04_RS12265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12265;old_locus_tag=RD04_12245 NZ_CP010961.1 Protein Homology CDS 2553675 2554505 . + 0 ID=cds2408;Parent=gene2452;Dbxref=Genbank:WP_003810490.1;Name=WP_003810490.1;gbkey=CDS;product=squalene synthase HpnC;protein_id=WP_003810490.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2554507 2555370 . + . ID=gene2453;Name=RD04_RS12270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12270;old_locus_tag=RD04_12250 NZ_CP010961.1 Protein Homology CDS 2554507 2555370 . + 0 ID=cds2409;Parent=gene2453;Dbxref=Genbank:WP_010930256.1;Name=WP_010930256.1;gbkey=CDS;product=squalene synthase HpnD;protein_id=WP_010930256.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2555367 2556698 . + . ID=gene2454;Name=RD04_RS12275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12275;old_locus_tag=RD04_12255 NZ_CP010961.1 Protein Homology CDS 2555367 2556698 . + 0 ID=cds2410;Parent=gene2454;Dbxref=Genbank:WP_010930255.1;Name=WP_010930255.1;gbkey=CDS;product=amine oxidoreductase;protein_id=WP_010930255.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2556721 2557107 . - . ID=gene2455;Name=RD04_RS12280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12280;old_locus_tag=RD04_12260 NZ_CP010961.1 Protein Homology CDS 2556721 2557107 . - 0 ID=cds2411;Parent=gene2455;Dbxref=Genbank:WP_003818609.1;Name=WP_003818609.1;gbkey=CDS;product=camphor resistance protein CrcB;protein_id=WP_003818609.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2557117 2557677 . - . ID=gene2456;Name=RD04_RS12285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12285;old_locus_tag=RD04_12265 NZ_CP010961.1 Protein Homology CDS 2557117 2557677 . - 0 ID=cds2412;Parent=gene2456;Dbxref=Genbank:WP_003818608.1;Name=WP_003818608.1;gbkey=CDS;product=membrane protein;protein_id=WP_003818608.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2557766 2558551 . - . ID=gene2457;Name=RD04_RS12290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12290;old_locus_tag=RD04_12270 NZ_CP010961.1 Protein Homology CDS 2557766 2558551 . - 0 ID=cds2413;Parent=gene2457;Dbxref=Genbank:WP_003818606.1;Name=WP_003818606.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003818606.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2558548 2559495 . - . ID=gene2458;Name=RD04_RS12295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12295;old_locus_tag=RD04_12275 NZ_CP010961.1 Protein Homology CDS 2558548 2559495 . - 0 ID=cds2414;Parent=gene2458;Dbxref=Genbank:WP_004568579.1;Name=WP_004568579.1;Note=involved in the export of lipooligosaccharides during nodulation;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_004568579.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2559642 2560271 . + . ID=gene2459;Name=RD04_RS12300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12300;old_locus_tag=RD04_12280 NZ_CP010961.1 Protein Homology CDS 2559642 2560271 . + 0 ID=cds2415;Parent=gene2459;Dbxref=Genbank:WP_003810476.1;Name=WP_003810476.1;gbkey=CDS;product=membrane protein;protein_id=WP_003810476.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2560294 2560809 . + . ID=gene2460;Name=RD04_RS12305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12305;old_locus_tag=RD04_12285 NZ_CP010961.1 Protein Homology CDS 2560294 2560809 . + 0 ID=cds2416;Parent=gene2460;Dbxref=Genbank:WP_010930254.1;Name=WP_010930254.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930254.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2560839 2561639 . + . ID=gene2461;Name=RD04_RS12310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12310;old_locus_tag=RD04_12290 NZ_CP010961.1 Protein Homology CDS 2560839 2561639 . + 0 ID=cds2417;Parent=gene2461;Dbxref=Genbank:WP_014905623.1;Name=WP_014905623.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_014905623.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2561644 2562660 . + . ID=gene2462;Name=RD04_RS12315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12315;old_locus_tag=RD04_12295 NZ_CP010961.1 Protein Homology CDS 2561644 2562660 . + 0 ID=cds2418;Parent=gene2462;Dbxref=Genbank:WP_010930252.1;Name=WP_010930252.1;gbkey=CDS;product=thiamine biosynthesis lipoprotein;protein_id=WP_010930252.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2562660 2564039 . + . ID=gene2463;Name=RD04_RS12320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12320;old_locus_tag=RD04_12300 NZ_CP010961.1 Protein Homology CDS 2562660 2564039 . + 0 ID=cds2419;Parent=gene2463;Dbxref=Genbank:WP_010930251.1;Name=WP_010930251.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010930251.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2564055 2565011 . - . ID=gene2464;Name=RD04_RS12325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12325;old_locus_tag=RD04_12305 NZ_CP010961.1 Protein Homology CDS 2564055 2565011 . - 0 ID=cds2420;Parent=gene2464;Dbxref=Genbank:WP_010930250.1;Name=WP_010930250.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010930250.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2565062 2566504 . - . ID=gene2465;Name=RD04_RS12330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12330;old_locus_tag=RD04_12310 NZ_CP010961.1 Protein Homology CDS 2565062 2566504 . - 0 ID=cds2421;Parent=gene2465;Dbxref=Genbank:WP_010930249.1;Name=WP_010930249.1;gbkey=CDS;product=N-acyl-D-glutamate deacylase;protein_id=WP_010930249.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2566609 2567571 . + . ID=gene2466;Name=RD04_RS12335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12335;old_locus_tag=RD04_12315 NZ_CP010961.1 Protein Homology CDS 2566609 2567571 . + 0 ID=cds2422;Parent=gene2466;Dbxref=Genbank:WP_010930248.1;Name=WP_010930248.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010930248.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2567579 2568031 . - . ID=gene2467;Name=RD04_RS12340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12340;old_locus_tag=RD04_12320 NZ_CP010961.1 Protein Homology CDS 2567579 2568031 . - 0 ID=cds2423;Parent=gene2467;Dbxref=Genbank:WP_010930247.1;Name=WP_010930247.1;gbkey=CDS;product=polyketide cyclase;protein_id=WP_010930247.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2568099 2568929 . - . ID=gene2468;Name=RD04_RS12345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12345;old_locus_tag=RD04_12325 NZ_CP010961.1 Protein Homology CDS 2568099 2568929 . - 0 ID=cds2424;Parent=gene2468;Dbxref=Genbank:WP_010930246.1;Name=WP_010930246.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930246.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2568939 2570147 . - . ID=gene2469;Name=RD04_RS12350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12350;old_locus_tag=RD04_12330 NZ_CP010961.1 Protein Homology CDS 2568939 2570147 . - 0 ID=cds2425;Parent=gene2469;Dbxref=Genbank:WP_010930245.1;Name=WP_010930245.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930245.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2570305 2571000 . + . ID=gene2470;Name=RD04_RS12355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12355;old_locus_tag=RD04_12335 NZ_CP010961.1 Protein Homology CDS 2570305 2571000 . + 0 ID=cds2426;Parent=gene2470;Dbxref=Genbank:WP_010930244.1;Name=WP_010930244.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_010930244.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2571097 2573040 . - . ID=gene2471;Name=RD04_RS12360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12360;old_locus_tag=RD04_12340 NZ_CP010961.1 Protein Homology CDS 2571097 2573040 . - 0 ID=cds2427;Parent=gene2471;Dbxref=Genbank:WP_010930243.1;Name=WP_010930243.1;gbkey=CDS;product=conjugal transfer protein TraC;protein_id=WP_010930243.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2573424 2574953 . - . ID=gene2472;Name=RD04_RS12365;end_range=2574953,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12365;old_locus_tag=RD04_12345;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2573424 2574953 . - 0 ID=cds2428;Parent=gene2472;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=2574953,.;gbkey=CDS;partial=true;product=autotransporter outer membrane beta-barrel domain-containing protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2574911 2575739 . - . ID=gene2473;Name=RD04_RS12370;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12370;old_locus_tag=RD04_12350;pseudo=true NZ_CP010961.1 Protein Homology CDS 2574911 2575739 . - 0 ID=cds2429;Parent=gene2473;Note=frameshifted;gbkey=CDS;product=integrase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2576619 2579216 . - . ID=gene2474;Name=RD04_RS12375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12375;old_locus_tag=RD04_12355 NZ_CP010961.1 Protein Homology CDS 2576619 2579216 . - 0 ID=cds2430;Parent=gene2474;Dbxref=Genbank:WP_010930242.1;Name=WP_010930242.1;gbkey=CDS;product=chaperone protein ClpB;protein_id=WP_010930242.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2579554 2580282 . + . ID=gene2475;Name=RD04_RS12380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12380;old_locus_tag=RD04_12360 NZ_CP010961.1 Protein Homology CDS 2579554 2580282 . + 0 ID=cds2431;Parent=gene2475;Dbxref=Genbank:WP_010930241.1;Name=WP_010930241.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010930241.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2580279 2581433 . + . ID=gene2476;Name=RD04_RS12385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12385;old_locus_tag=RD04_12365 NZ_CP010961.1 Protein Homology CDS 2580279 2581433 . + 0 ID=cds2432;Parent=gene2476;Dbxref=Genbank:WP_010930240.1;Name=WP_010930240.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930240.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2581467 2581808 . - . ID=gene2477;Name=RD04_RS12390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12390;old_locus_tag=RD04_12370 NZ_CP010961.1 Protein Homology CDS 2581467 2581808 . - 0 ID=cds2433;Parent=gene2477;Dbxref=Genbank:WP_003818584.1;Name=WP_003818584.1;gbkey=CDS;product=ferredoxin;protein_id=WP_003818584.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2581805 2582407 . - . ID=gene2478;Name=RD04_RS12395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12395;old_locus_tag=RD04_12375 NZ_CP010961.1 Protein Homology CDS 2581805 2582407 . - 0 ID=cds2434;Parent=gene2478;Dbxref=Genbank:WP_033446250.1;Name=WP_033446250.1;gbkey=CDS;product=ADP-ribose pyrophosphatase;protein_id=WP_033446250.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2582472 2582690 . - . ID=gene2479;Name=RD04_RS12400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12400;old_locus_tag=RD04_12380 NZ_CP010961.1 Protein Homology CDS 2582472 2582690 . - 0 ID=cds2435;Parent=gene2479;Dbxref=Genbank:WP_003810443.1;Name=WP_003810443.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003810443.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2582715 2583041 . - . ID=gene2480;Name=RD04_RS12405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12405;old_locus_tag=RD04_12385 NZ_CP010961.1 Protein Homology CDS 2582715 2583041 . - 0 ID=cds2436;Parent=gene2480;Dbxref=Genbank:WP_003818581.1;Name=WP_003818581.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003818581.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2583186 2584091 . - . ID=gene2481;Name=RD04_RS12410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12410;old_locus_tag=RD04_12390 NZ_CP010961.1 Protein Homology CDS 2583186 2584091 . - 0 ID=cds2437;Parent=gene2481;Dbxref=Genbank:WP_003818580.1;Name=WP_003818580.1;Note=Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription;gbkey=CDS;product=RNA polymerase sigma factor SigJ;protein_id=WP_003818580.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2584084 2584530 . - . ID=gene2482;Name=RD04_RS12415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12415;old_locus_tag=RD04_12395 NZ_CP010961.1 Protein Homology CDS 2584084 2584530 . - 0 ID=cds2438;Parent=gene2482;Dbxref=Genbank:WP_003810437.1;Name=WP_003810437.1;gbkey=CDS;product=alkylhydroperoxidase;protein_id=WP_003810437.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2584755 2585186 . + . ID=gene2483;Name=RD04_RS12420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12420;old_locus_tag=RD04_12400 NZ_CP010961.1 Protein Homology CDS 2584755 2585186 . + 0 ID=cds2439;Parent=gene2483;Dbxref=Genbank:WP_033446254.1;Name=WP_033446254.1;gbkey=CDS;product=lipoprotein;protein_id=WP_033446254.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2585194 2585412 . - . ID=gene2484;Name=RD04_RS12425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12425;old_locus_tag=RD04_12405 NZ_CP010961.1 Protein Homology CDS 2585194 2585412 . - 0 ID=cds2440;Parent=gene2484;Dbxref=Genbank:WP_010930238.1;Name=WP_010930238.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930238.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2585424 2586308 . - . ID=gene2485;Name=RD04_RS12430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12430;old_locus_tag=RD04_12410 NZ_CP010961.1 Protein Homology CDS 2585424 2586308 . - 0 ID=cds2441;Parent=gene2485;Dbxref=Genbank:WP_010930237.1;Name=WP_010930237.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930237.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2586465 2586659 . - . ID=gene2486;Name=RD04_RS12435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12435;old_locus_tag=RD04_12415 NZ_CP010961.1 Protein Homology CDS 2586465 2586659 . - 0 ID=cds2442;Parent=gene2486;Dbxref=Genbank:WP_019247642.1;Name=WP_019247642.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247642.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2586945 2587625 . + . ID=gene2487;Name=RD04_RS12440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12440;old_locus_tag=RD04_12420 NZ_CP010961.1 Protein Homology CDS 2586945 2587625 . + 0 ID=cds2443;Parent=gene2487;Dbxref=Genbank:WP_010930236.1;Name=WP_010930236.1;gbkey=CDS;product=methyltransferase;protein_id=WP_010930236.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2587622 2588824 . + . ID=gene2488;Name=RD04_RS12445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12445;old_locus_tag=RD04_12425 NZ_CP010961.1 Protein Homology CDS 2587622 2588824 . + 0 ID=cds2444;Parent=gene2488;Dbxref=Genbank:WP_010930235.1;Name=WP_010930235.1;Note=catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate;gbkey=CDS;product=aspartate aminotransferase;protein_id=WP_010930235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2588987 2589703 . + . ID=gene2489;Name=RD04_RS12450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12450;old_locus_tag=RD04_12430 NZ_CP010961.1 Protein Homology CDS 2588987 2589703 . + 0 ID=cds2445;Parent=gene2489;Dbxref=Genbank:WP_010928212.1;Name=WP_010928212.1;gbkey=CDS;product=cysteine ABC transporter substrate-binding protein;protein_id=WP_010928212.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2589807 2590496 . + . ID=gene2490;Name=RD04_RS12455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12455;old_locus_tag=RD04_12435 NZ_CP010961.1 Protein Homology CDS 2589807 2590496 . + 0 ID=cds2446;Parent=gene2490;Dbxref=Genbank:WP_003810422.1;Name=WP_003810422.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_003810422.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2590489 2591178 . + . ID=gene2491;Name=RD04_RS12460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12460;old_locus_tag=RD04_12440 NZ_CP010961.1 Protein Homology CDS 2590489 2591178 . + 0 ID=cds2447;Parent=gene2491;Dbxref=Genbank:WP_003810420.1;Name=WP_003810420.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_003810420.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2591198 2591935 . + . ID=gene2492;Name=RD04_RS12465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12465;old_locus_tag=RD04_12445 NZ_CP010961.1 Protein Homology CDS 2591198 2591935 . + 0 ID=cds2448;Parent=gene2492;Dbxref=Genbank:WP_010930234.1;Name=WP_010930234.1;gbkey=CDS;product=arginine ABC transporter ATP-binding protein;protein_id=WP_010930234.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2592009 2592983 . + . ID=gene2493;Name=RD04_RS12470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12470;old_locus_tag=RD04_12450 NZ_CP010961.1 Protein Homology CDS 2592009 2592983 . + 0 ID=cds2449;Parent=gene2493;Dbxref=Genbank:WP_029443824.1;Name=WP_029443824.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_029443824.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2593329 2594192 . + . ID=gene2494;Name=RD04_RS12475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12475;old_locus_tag=RD04_12455 NZ_CP010961.1 Protein Homology CDS 2593329 2594192 . + 0 ID=cds2450;Parent=gene2494;Dbxref=Genbank:WP_010930232.1;Name=WP_010930232.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930232.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2594258 2595208 . - . ID=gene2495;Name=RD04_RS12480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12480;old_locus_tag=RD04_12460 NZ_CP010961.1 Protein Homology CDS 2594258 2595208 . - 0 ID=cds2451;Parent=gene2495;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2595307 2596188 . - . ID=gene2496;Name=RD04_RS12485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12485;old_locus_tag=RD04_12465 NZ_CP010961.1 Protein Homology CDS 2595307 2596188 . - 0 ID=cds2452;Parent=gene2496;Dbxref=Genbank:WP_003813574.1;Name=WP_003813574.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813574.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2596266 2597645 . - . ID=gene2497;Name=RD04_RS12490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12490;old_locus_tag=RD04_12470 NZ_CP010961.1 Protein Homology CDS 2596266 2597645 . - 0 ID=cds2453;Parent=gene2497;Dbxref=Genbank:WP_003821443.1;Name=WP_003821443.1;gbkey=CDS;product=4Fe-4S binding domain-containing protein;protein_id=WP_003821443.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2597684 2598529 . - . ID=gene2498;Name=RD04_RS12495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12495;old_locus_tag=RD04_12475 NZ_CP010961.1 Protein Homology CDS 2597684 2598529 . - 0 ID=cds2454;Parent=gene2498;Dbxref=Genbank:WP_010930218.1;Name=WP_010930218.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930218.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2598545 2598859 . - . ID=gene2499;Name=RD04_RS12500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12500;old_locus_tag=RD04_12480 NZ_CP010961.1 Protein Homology CDS 2598545 2598859 . - 0 ID=cds2455;Parent=gene2499;Dbxref=Genbank:WP_033451623.1;Name=WP_033451623.1;gbkey=CDS;product=periplasmic lipoprotein involved in iron transport;protein_id=WP_033451623.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2598892 2599428 . - . ID=gene2500;Name=RD04_RS12505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12505;old_locus_tag=RD04_12485 NZ_CP010961.1 Protein Homology CDS 2598892 2599428 . - 0 ID=cds2456;Parent=gene2500;Dbxref=Genbank:WP_010930217.1;Name=WP_010930217.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930217.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2599601 2600176 . - . ID=gene2501;Name=RD04_RS12510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12510;old_locus_tag=RD04_12490 NZ_CP010961.1 Protein Homology CDS 2599601 2600176 . - 0 ID=cds2457;Parent=gene2501;Dbxref=Genbank:WP_003813585.1;Name=WP_003813585.1;gbkey=CDS;product=polyhydroxyalkanoate synthesis repressor PhaR;protein_id=WP_003813585.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2600279 2601016 . - . ID=gene2502;Name=RD04_RS12515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12515;old_locus_tag=RD04_12495 NZ_CP010961.1 Protein Homology CDS 2600279 2601016 . - 0 ID=cds2458;Parent=gene2502;Dbxref=Genbank:WP_003813586.1;Name=WP_003813586.1;Note=catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis;gbkey=CDS;product=beta-ketoacyl-ACP reductase;protein_id=WP_003813586.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2601084 2602721 . - . ID=gene2503;Name=RD04_RS12520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12520;old_locus_tag=RD04_12500 NZ_CP010961.1 Protein Homology CDS 2601084 2602721 . - 0 ID=cds2459;Parent=gene2503;Dbxref=Genbank:WP_010930216.1;Name=WP_010930216.1;gbkey=CDS;product=class I poly(R)-hydroxyalkanoic acid synthase;protein_id=WP_010930216.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2602829 2603584 . - . ID=gene2504;Name=RD04_RS12525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12525;old_locus_tag=RD04_12505 NZ_CP010961.1 Protein Homology CDS 2602829 2603584 . - 0 ID=cds2460;Parent=gene2504;Dbxref=Genbank:WP_019247742.1;Name=WP_019247742.1;gbkey=CDS;product=laccase;protein_id=WP_019247742.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2603572 2604534 . - . ID=gene2505;Name=RD04_RS12530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12530;old_locus_tag=RD04_12510 NZ_CP010961.1 Protein Homology CDS 2603572 2604534 . - 0 ID=cds2461;Parent=gene2505;Dbxref=Genbank:WP_010930214.1;Name=WP_010930214.1;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase D;protein_id=WP_010930214.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2604642 2605436 . + . ID=gene2506;Name=RD04_RS12535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12535;old_locus_tag=RD04_12515 NZ_CP010961.1 Protein Homology CDS 2604642 2605436 . + 0 ID=cds2462;Parent=gene2506;Dbxref=Genbank:WP_033446255.1;Name=WP_033446255.1;gbkey=CDS;product=competence protein ComL;protein_id=WP_033446255.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2605498 2607573 . - . ID=gene2507;Name=RD04_RS12540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12540;old_locus_tag=RD04_12520 NZ_CP010961.1 Protein Homology CDS 2605498 2607573 . - 0 ID=cds2463;Parent=gene2507;Dbxref=Genbank:WP_010930213.1;Name=WP_010930213.1;gbkey=CDS;product=helicase;protein_id=WP_010930213.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2607738 2610113 . + . ID=gene2508;Name=RD04_RS12545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12545;old_locus_tag=RD04_12525 NZ_CP010961.1 Protein Homology CDS 2607738 2610113 . + 0 ID=cds2464;Parent=gene2508;Dbxref=Genbank:WP_010930212.1;Name=WP_010930212.1;gbkey=CDS;product=protein tex;protein_id=WP_010930212.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2610194 2611549 . - . ID=gene2509;Name=RD04_RS12550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12550;old_locus_tag=RD04_12530 NZ_CP010961.1 Protein Homology CDS 2610194 2611549 . - 0 ID=cds2465;Parent=gene2509;Dbxref=Genbank:WP_010930211.1;Name=WP_010930211.1;Note=catalyzes a two-step reaction%2C first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA;gbkey=CDS;product=tryptophan--tRNA ligase;protein_id=WP_010930211.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2611940 2612560 . - . ID=gene2510;Name=RD04_RS12555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12555;partial=true;pseudo=true;start_range=.,2611940 NZ_CP010961.1 Protein Homology CDS 2611940 2612560 . - 0 ID=cds2466;Parent=gene2510;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=integrase;pseudo=true;start_range=.,2611940;transl_table=11 NZ_CP010961.1 RefSeq gene 2612654 2613031 . + . ID=gene2511;Name=RD04_RS12560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12560;old_locus_tag=RD04_12540;partial=true;pseudo=true;start_range=.,2612654 NZ_CP010961.1 Protein Homology CDS 2612654 2613031 . + 0 ID=cds2467;Parent=gene2511;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=taurine dioxygenase;pseudo=true;start_range=.,2612654;transl_table=11 NZ_CP010961.1 RefSeq gene 2613028 2613750 . + . ID=gene2512;Name=RD04_RS12565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12565;old_locus_tag=RD04_12545 NZ_CP010961.1 Protein Homology CDS 2613028 2613750 . + 0 ID=cds2468;Parent=gene2512;Dbxref=Genbank:WP_003813618.1;Name=WP_003813618.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_003813618.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2613805 2614788 . + . ID=gene2513;Name=RD04_RS12570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12570;old_locus_tag=RD04_12550 NZ_CP010961.1 Protein Homology CDS 2613805 2614788 . + 0 ID=cds2469;Parent=gene2513;Dbxref=Genbank:WP_010930207.1;Name=WP_010930207.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010930207.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2614966 2615868 . + . ID=gene2514;Name=RD04_RS12575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12575;old_locus_tag=RD04_12555 NZ_CP010961.1 GeneMarkS+ CDS 2614966 2615868 . + 0 ID=cds2470;Parent=gene2514;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2616015 2616917 . + . ID=gene2515;Name=RD04_RS12580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12580;old_locus_tag=RD04_12560 NZ_CP010961.1 GeneMarkS+ CDS 2616015 2616917 . + 0 ID=cds2471;Parent=gene2515;Dbxref=Genbank:WP_062826647.1;Name=WP_062826647.1;gbkey=CDS;product=integrase;protein_id=WP_062826647.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2617016 2617966 . + . ID=gene2516;Name=RD04_RS12585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12585;old_locus_tag=RD04_12565 NZ_CP010961.1 Protein Homology CDS 2617016 2617966 . + 0 ID=cds2472;Parent=gene2516;Dbxref=Genbank:WP_010930048.1;Name=WP_010930048.1;gbkey=CDS;product=transposase;protein_id=WP_010930048.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2617963 2618865 . - . ID=gene2517;Name=RD04_RS12590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12590;old_locus_tag=RD04_12570 NZ_CP010961.1 Protein Homology CDS 2617963 2618865 . - 0 ID=cds2473;Parent=gene2517;Dbxref=Genbank:WP_003813621.1;Name=WP_003813621.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003813621.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2618953 2619711 . + . ID=gene2518;Name=RD04_RS12595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12595;old_locus_tag=RD04_12575 NZ_CP010961.1 Protein Homology CDS 2618953 2619711 . + 0 ID=cds2474;Parent=gene2518;Dbxref=Genbank:WP_010930206.1;Name=WP_010930206.1;gbkey=CDS;product=3-oxoacyl-ACP reductase;protein_id=WP_010930206.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2619724 2620815 . - . ID=gene2519;Name=RD04_RS12600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12600;old_locus_tag=RD04_12580 NZ_CP010961.1 Protein Homology CDS 2619724 2620815 . - 0 ID=cds2475;Parent=gene2519;Dbxref=Genbank:WP_023853245.1;Name=WP_023853245.1;gbkey=CDS;product=AFG1 family ATPase;protein_id=WP_023853245.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2620913 2622340 . - . ID=gene2520;Name=RD04_RS12605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12605;old_locus_tag=RD04_12585 NZ_CP010961.1 Protein Homology CDS 2620913 2622340 . - 0 ID=cds2476;Parent=gene2520;Dbxref=Genbank:WP_003813626.1;Name=WP_003813626.1;Note=E3 component of 2-oxoglutarate dehydrogenase complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide;gbkey=CDS;product=dihydrolipoyl dehydrogenase;protein_id=WP_003813626.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2622570 2623784 . - . ID=gene2521;Name=RD04_RS12610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12610;old_locus_tag=RD04_12590 NZ_CP010961.1 Protein Homology CDS 2622570 2623784 . - 0 ID=cds2477;Parent=gene2521;Dbxref=Genbank:WP_010930204.1;Name=WP_010930204.1;gbkey=CDS;product=dihydrolipoamide succinyltransferase;protein_id=WP_010930204.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2623830 2626700 . - . ID=gene2522;Name=sucA;gbkey=Gene;gene=sucA;gene_biotype=protein_coding;locus_tag=RD04_RS12615;old_locus_tag=RD04_12595 NZ_CP010961.1 Protein Homology CDS 2623830 2626700 . - 0 ID=cds2478;Parent=gene2522;Dbxref=Genbank:WP_003813631.1;Name=WP_003813631.1;Note=SucA%3B E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate%3B SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide;gbkey=CDS;gene=sucA;product=2-oxoglutarate dehydrogenase subunit E1;protein_id=WP_003813631.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2627025 2627927 . - . ID=gene2523;Name=RD04_RS12620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12620;old_locus_tag=RD04_12600 NZ_CP010961.1 GeneMarkS+ CDS 2627025 2627927 . - 0 ID=cds2479;Parent=gene2523;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2628074 2628283 . - . ID=gene2524;Name=RD04_RS12625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12625;old_locus_tag=RD04_12605 NZ_CP010961.1 Protein Homology CDS 2628074 2628283 . - 0 ID=cds2480;Parent=gene2524;Dbxref=Genbank:WP_019247914.1;Name=WP_019247914.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247914.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2628262 2630124 . - . ID=gene2525;Name=RD04_RS12630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12630;old_locus_tag=RD04_12610 NZ_CP010961.1 GeneMarkS+ CDS 2628262 2630124 . - 0 ID=cds2481;Parent=gene2525;Dbxref=Genbank:WP_023853259.1;Name=WP_023853259.1;gbkey=CDS;product=oligopeptide transporter%2C OPT family;protein_id=WP_023853259.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2630160 2630648 . - . ID=gene2526;Name=RD04_RS12635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12635;old_locus_tag=RD04_12615 NZ_CP010961.1 Protein Homology CDS 2630160 2630648 . - 0 ID=cds2482;Parent=gene2526;Dbxref=Genbank:WP_010930202.1;Name=WP_010930202.1;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_010930202.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2630774 2633470 . + . ID=gene2527;Name=RD04_RS12640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12640;old_locus_tag=RD04_12620 NZ_CP010961.1 Protein Homology CDS 2630774 2633470 . + 0 ID=cds2483;Parent=gene2527;Dbxref=Genbank:WP_010930201.1;Name=WP_010930201.1;gbkey=CDS;product=alpha-ketoglutarate dehydrogenase;protein_id=WP_010930201.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2633625 2635907 . + . ID=gene2528;Name=RD04_RS12645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12645;old_locus_tag=RD04_12625 NZ_CP010961.1 Protein Homology CDS 2633625 2635907 . + 0 ID=cds2484;Parent=gene2528;Dbxref=Genbank:WP_010930200.1;Name=WP_010930200.1;Note=NADP-dependent%3B catalyzes the oxidative decarboxylation of malate to form pyruvate%3B decarboxylates oxaloacetate;gbkey=CDS;product=malic enzyme;protein_id=WP_010930200.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2636084 2636707 . + . ID=gene2529;Name=RD04_RS12650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12650;old_locus_tag=RD04_12630 NZ_CP010961.1 Protein Homology CDS 2636084 2636707 . + 0 ID=cds2485;Parent=gene2529;Dbxref=Genbank:WP_019248935.1;Name=WP_019248935.1;gbkey=CDS;product=serotype 2 fimbrial subunit;protein_id=WP_019248935.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2636854 2637756 . + . ID=gene2530;Name=RD04_RS12655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12655;old_locus_tag=RD04_12635 NZ_CP010961.1 GeneMarkS+ CDS 2636854 2637756 . + 0 ID=cds2486;Parent=gene2530;Dbxref=Genbank:WP_039250121.1;Name=WP_039250121.1;gbkey=CDS;product=integrase;protein_id=WP_039250121.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2637803 2638357 . - . ID=gene2531;Name=RD04_RS12660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12660;old_locus_tag=RD04_12640 NZ_CP010961.1 Protein Homology CDS 2637803 2638357 . - 0 ID=cds2487;Parent=gene2531;Dbxref=Genbank:WP_003812405.1;Name=WP_003812405.1;gbkey=CDS;product=transcription elongation factor;protein_id=WP_003812405.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2638425 2639270 . - . ID=gene2532;Name=RD04_RS12665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12665;old_locus_tag=RD04_12645 NZ_CP010961.1 Protein Homology CDS 2638425 2639270 . - 0 ID=cds2488;Parent=gene2532;Dbxref=Genbank:WP_003816844.1;Name=WP_003816844.1;gbkey=CDS;product=phosphatase;protein_id=WP_003816844.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2639340 2640308 . - . ID=gene2533;Name=RD04_RS12670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12670;old_locus_tag=RD04_12650 NZ_CP010961.1 Protein Homology CDS 2639340 2640308 . - 0 ID=cds2489;Parent=gene2533;Dbxref=Genbank:WP_019248398.1;Name=WP_019248398.1;gbkey=CDS;product=alpha/beta hydrolase;protein_id=WP_019248398.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2641154 2642104 . - . ID=gene2534;Name=RD04_RS12675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12675;old_locus_tag=RD04_12655;partial=true;pseudo=true;start_range=.,2641154 NZ_CP010961.1 Protein Homology CDS 2641154 2642104 . - 0 ID=cds2490;Parent=gene2534;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=integrase;pseudo=true;start_range=.,2641154;transl_table=11 NZ_CP010961.1 RefSeq gene 2642203 2643831 . - . ID=gene2535;Name=RD04_RS12680;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12680;old_locus_tag=RD04_12660;partial=true;pseudo=true;start_range=.,2642203 NZ_CP010961.1 Protein Homology CDS 2642203 2643831 . - 0 ID=cds2491;Parent=gene2535;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=competence protein;pseudo=true;start_range=.,2642203;transl_table=11 NZ_CP010961.1 RefSeq gene 2644004 2647897 . - . ID=gene2536;Name=RD04_RS12685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12685;old_locus_tag=RD04_12665 NZ_CP010961.1 Protein Homology CDS 2644004 2647897 . - 0 ID=cds2492;Parent=gene2536;Dbxref=Genbank:WP_019248396.1;Name=WP_019248396.1;gbkey=CDS;product=inverse autotransporter beta-barrel domain-containing protein;protein_id=WP_019248396.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2648221 2648397 . - . ID=gene2537;Name=RD04_RS12690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12690;old_locus_tag=RD04_12670 NZ_CP010961.1 Protein Homology CDS 2648221 2648397 . - 0 ID=cds2493;Parent=gene2537;Dbxref=Genbank:WP_010930195.1;Name=WP_010930195.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930195.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2648666 2651896 . - . ID=gene2538;Name=RD04_RS12695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12695;old_locus_tag=RD04_12675 NZ_CP010961.1 Protein Homology CDS 2648666 2651896 . - 0 ID=cds2494;Parent=gene2538;Dbxref=Genbank:WP_010930194.1;Name=WP_010930194.1;gbkey=CDS;product=serine protease;protein_id=WP_010930194.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2652178 2653005 . - . ID=gene2539;Name=RD04_RS12700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12700;old_locus_tag=RD04_12680 NZ_CP010961.1 Protein Homology CDS 2652178 2653005 . - 0 ID=cds2495;Parent=gene2539;Dbxref=Genbank:WP_010928340.1;Name=WP_010928340.1;gbkey=CDS;product=deoxyribonuclease;protein_id=WP_010928340.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2653039 2653734 . - . ID=gene2540;Name=RD04_RS12705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12705;old_locus_tag=RD04_12685 NZ_CP010961.1 Protein Homology CDS 2653039 2653734 . - 0 ID=cds2496;Parent=gene2540;Dbxref=Genbank:WP_003812422.1;Name=WP_003812422.1;gbkey=CDS;product=lipoprotein-releasing system ATP-binding protein LolD;protein_id=WP_003812422.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2653727 2654959 . - . ID=gene2541;Name=RD04_RS12710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12710;old_locus_tag=RD04_12690 NZ_CP010961.1 Protein Homology CDS 2653727 2654959 . - 0 ID=cds2497;Parent=gene2541;Dbxref=Genbank:WP_010930193.1;Name=WP_010930193.1;gbkey=CDS;product=cell division protein FtsX;protein_id=WP_010930193.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2655053 2655994 . + . ID=gene2542;Name=RD04_RS12715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12715;old_locus_tag=RD04_12695 NZ_CP010961.1 Protein Homology CDS 2655053 2655994 . + 0 ID=cds2498;Parent=gene2542;Dbxref=Genbank:WP_023853218.1;Name=WP_023853218.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853218.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2655976 2657676 . + . ID=gene2543;Name=RD04_RS12720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12720;old_locus_tag=RD04_12700 NZ_CP010961.1 Protein Homology CDS 2655976 2657676 . + 0 ID=cds2499;Parent=gene2543;Dbxref=Genbank:WP_010930191.1;Name=WP_010930191.1;gbkey=CDS;product=single-stranded-DNA-specific exonuclease;protein_id=WP_010930191.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2657951 2658883 . + . ID=gene2544;Name=RD04_RS12725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12725;old_locus_tag=RD04_12705 NZ_CP010961.1 Protein Homology CDS 2657951 2658883 . + 0 ID=cds2500;Parent=gene2544;Dbxref=Genbank:WP_042144251.1;Name=WP_042144251.1;Note=catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA;gbkey=CDS;product=peptide chain release factor 2;protein_id=WP_042144251.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2658913 2659668 . + . ID=gene2545;Name=RD04_RS12730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12730;old_locus_tag=RD04_12710 NZ_CP010961.1 Protein Homology CDS 2658913 2659668 . + 0 ID=cds2501;Parent=gene2545;Dbxref=Genbank:WP_010926447.1;Name=WP_010926447.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_010926447.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2659675 2661195 . + . ID=gene2546;Name=RD04_RS12735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12735;old_locus_tag=RD04_12715 NZ_CP010961.1 Protein Homology CDS 2659675 2661195 . + 0 ID=cds2502;Parent=gene2546;Dbxref=Genbank:WP_010930190.1;Name=WP_010930190.1;gbkey=CDS;product=lysine--tRNA ligase;protein_id=WP_010930190.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2661238 2661526 . + . ID=gene2547;Name=RD04_RS12740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12740;old_locus_tag=RD04_12720;pseudo=true NZ_CP010961.1 Protein Homology CDS 2661238 2661526 . + 0 ID=cds2503;Parent=gene2547;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2661523 2662155 . - . ID=gene2548;Name=RD04_RS12745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12745;old_locus_tag=RD04_12725 NZ_CP010961.1 Protein Homology CDS 2661523 2662155 . - 0 ID=cds2504;Parent=gene2548;Dbxref=Genbank:WP_003812436.1;Name=WP_003812436.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_003812436.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2662234 2664099 . - . ID=gene2549;Name=RD04_RS12750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12750;old_locus_tag=RD04_12730 NZ_CP010961.1 Protein Homology CDS 2662234 2664099 . - 0 ID=cds2505;Parent=gene2549;Dbxref=Genbank:WP_010930188.1;Name=WP_010930188.1;gbkey=CDS;product=long-chain-fatty-acid--CoA ligase;protein_id=WP_010930188.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2664096 2664911 . - . ID=gene2550;Name=RD04_RS12755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12755;old_locus_tag=RD04_12735 NZ_CP010961.1 Protein Homology CDS 2664096 2664911 . - 0 ID=cds2506;Parent=gene2550;Dbxref=Genbank:WP_010930187.1;Name=WP_010930187.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930187.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2664919 2666034 . - . ID=gene2551;Name=RD04_RS12760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12760;old_locus_tag=RD04_12740 NZ_CP010961.1 Protein Homology CDS 2664919 2666034 . - 0 ID=cds2507;Parent=gene2551;Dbxref=Genbank:WP_010930186.1;Name=WP_010930186.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_010930186.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2666445 2666687 . + . ID=gene2552;Name=RD04_RS12765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12765;old_locus_tag=RD04_12745 NZ_CP010961.1 GeneMarkS+ CDS 2666445 2666687 . + 0 ID=cds2508;Parent=gene2552;Dbxref=Genbank:WP_029444035.1;Name=WP_029444035.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_029444035.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2666939 2667817 . - . ID=gene2553;Name=RD04_RS12770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12770;old_locus_tag=RD04_12750 NZ_CP010961.1 Protein Homology CDS 2666939 2667817 . - 0 ID=cds2509;Parent=gene2553;Dbxref=Genbank:WP_010930185.1;Name=WP_010930185.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010930185.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2667817 2668641 . - . ID=gene2554;Name=RD04_RS12775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12775;old_locus_tag=RD04_12755 NZ_CP010961.1 Protein Homology CDS 2667817 2668641 . - 0 ID=cds2510;Parent=gene2554;Dbxref=Genbank:WP_010930184.1;Name=WP_010930184.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010930184.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2668809 2669759 . - . ID=gene2555;Name=RD04_RS12780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12780;old_locus_tag=RD04_12760 NZ_CP010961.1 Protein Homology CDS 2668809 2669759 . - 0 ID=cds2511;Parent=gene2555;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2669972 2672821 . + . ID=gene2556;Name=RD04_RS12785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12785;old_locus_tag=RD04_12765 NZ_CP010961.1 Protein Homology CDS 2669972 2672821 . + 0 ID=cds2512;Parent=gene2556;Dbxref=Genbank:WP_010930183.1;Name=WP_010930183.1;gbkey=CDS;product=diguanylate phosphodiesterase;protein_id=WP_010930183.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2672803 2673531 . - . ID=gene2557;Name=RD04_RS12790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12790;old_locus_tag=RD04_12770 NZ_CP010961.1 Protein Homology CDS 2672803 2673531 . - 0 ID=cds2513;Parent=gene2557;Dbxref=Genbank:WP_010930182.1;Name=WP_010930182.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930182.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2673672 2675135 . - . ID=gene2558;Name=RD04_RS12795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12795;old_locus_tag=RD04_12775 NZ_CP010961.1 Protein Homology CDS 2673672 2675135 . - 0 ID=cds2514;Parent=gene2558;Dbxref=Genbank:WP_010930181.1;Name=WP_010930181.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930181.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2675132 2675503 . - . ID=gene2559;Name=RD04_RS12800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12800;old_locus_tag=RD04_12780 NZ_CP010961.1 Protein Homology CDS 2675132 2675503 . - 0 ID=cds2515;Parent=gene2559;Dbxref=Genbank:WP_010930180.1;Name=WP_010930180.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930180.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2675521 2676834 . + . ID=gene2560;Name=RD04_RS12805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12805;old_locus_tag=RD04_12785 NZ_CP010961.1 Protein Homology CDS 2675521 2676834 . + 0 ID=cds2516;Parent=gene2560;Dbxref=Genbank:WP_003812701.1;Name=WP_003812701.1;gbkey=CDS;product=membrane protein;protein_id=WP_003812701.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2676871 2677329 . + . ID=gene2561;Name=RD04_RS12810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12810;old_locus_tag=RD04_12790 NZ_CP010961.1 Protein Homology CDS 2676871 2677329 . + 0 ID=cds2517;Parent=gene2561;Dbxref=Genbank:WP_003812703.1;Name=WP_003812703.1;gbkey=CDS;product=CBS domain-containing protein;protein_id=WP_003812703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2677442 2678302 . + . ID=gene2562;Name=RD04_RS12815;end_range=2678302,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12815;old_locus_tag=RD04_12795;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2677442 2678302 . + 0 ID=cds2518;Parent=gene2562;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;end_range=2678302,.;gbkey=CDS;partial=true;product=integrase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2678389 2679366 . - . ID=gene2563;Name=RD04_RS12820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12820;old_locus_tag=RD04_12800 NZ_CP010961.1 Protein Homology CDS 2678389 2679366 . - 0 ID=cds2519;Parent=gene2563;Dbxref=Genbank:WP_019247392.1;Name=WP_019247392.1;gbkey=CDS;product=tRNA dihydrouridine synthase DusA;protein_id=WP_019247392.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2679542 2680528 . + . ID=gene2564;Name=RD04_RS12825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12825;old_locus_tag=RD04_12805 NZ_CP010961.1 Protein Homology CDS 2679542 2680528 . + 0 ID=cds2520;Parent=gene2564;Dbxref=Genbank:WP_003812707.1;Name=WP_003812707.1;Note=catalyzes the formation of O-phospho-L-homoserine from L-homoserine;gbkey=CDS;product=homoserine kinase;protein_id=WP_003812707.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2680572 2681372 . + . ID=gene2565;Name=RD04_RS12830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12830;old_locus_tag=RD04_12810 NZ_CP010961.1 Protein Homology CDS 2680572 2681372 . + 0 ID=cds2521;Parent=gene2565;Dbxref=Genbank:WP_010930177.1;Name=WP_010930177.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930177.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2681594 2682184 . - . ID=gene2566;Name=RD04_RS12835;end_range=2682184,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12835;old_locus_tag=RD04_12815;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2681594 2682184 . - 0 ID=cds2522;Parent=gene2566;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=2682184,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2682175 2683077 . - . ID=gene2567;Name=RD04_RS12840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12840;old_locus_tag=RD04_12820 NZ_CP010961.1 GeneMarkS+ CDS 2682175 2683077 . - 0 ID=cds2523;Parent=gene2567;Dbxref=Genbank:WP_062826648.1;Name=WP_062826648.1;gbkey=CDS;product=integrase;protein_id=WP_062826648.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2683277 2683879 . - . ID=gene2568;Name=RD04_RS12845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12845;old_locus_tag=RD04_12825 NZ_CP010961.1 Protein Homology CDS 2683277 2683879 . - 0 ID=cds2524;Parent=gene2568;Dbxref=Genbank:WP_003809618.1;Name=WP_003809618.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003809618.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2683898 2684530 . + . ID=gene2569;Name=RD04_RS12850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12850;old_locus_tag=RD04_12830 NZ_CP010961.1 Protein Homology CDS 2683898 2684530 . + 0 ID=cds2525;Parent=gene2569;Dbxref=Genbank:WP_010930175.1;Name=WP_010930175.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase E;protein_id=WP_010930175.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2684768 2686654 . + . ID=gene2570;Name=RD04_RS12855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12855;old_locus_tag=RD04_12835 NZ_CP010961.1 Protein Homology CDS 2684768 2686654 . + 0 ID=cds2526;Parent=gene2570;Dbxref=Genbank:WP_010930174.1;Name=WP_010930174.1;gbkey=CDS;product=ATP-dependent metalloprotease;protein_id=WP_010930174.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2686673 2687515 . + . ID=gene2571;Name=RD04_RS12860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12860;old_locus_tag=RD04_12840 NZ_CP010961.1 Protein Homology CDS 2686673 2687515 . + 0 ID=cds2527;Parent=gene2571;Dbxref=Genbank:WP_010930173.1;Name=WP_010930173.1;gbkey=CDS;product=dihydropteroate synthase;protein_id=WP_010930173.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2687512 2688870 . + . ID=gene2572;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=RD04_RS12865;old_locus_tag=RD04_12845 NZ_CP010961.1 Protein Homology CDS 2687512 2688870 . + 0 ID=cds2528;Parent=gene2572;Dbxref=Genbank:WP_003819875.1;Name=WP_003819875.1;Note=catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate;gbkey=CDS;gene=glmM;product=phosphoglucosamine mutase;protein_id=WP_003819875.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2689091 2689885 . + . ID=gene2573;Name=RD04_RS12870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12870;old_locus_tag=RD04_12850 NZ_CP010961.1 Protein Homology CDS 2689091 2689885 . + 0 ID=cds2529;Parent=gene2573;Dbxref=Genbank:WP_003809629.1;Name=WP_003809629.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003809629.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2690116 2691609 . - . ID=gene2574;Name=RD04_RS12875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12875;old_locus_tag=RD04_12855 NZ_CP010961.1 Protein Homology CDS 2690116 2691609 . - 0 ID=cds2530;Parent=gene2574;Dbxref=Genbank:WP_010930172.1;Name=WP_010930172.1;gbkey=CDS;product=exopolyphosphatase;protein_id=WP_010930172.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2691845 2693926 . + . ID=gene2575;Name=RD04_RS12880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12880;old_locus_tag=RD04_12860 NZ_CP010961.1 Protein Homology CDS 2691845 2693926 . + 0 ID=cds2531;Parent=gene2575;Dbxref=Genbank:WP_010930171.1;Name=WP_010930171.1;gbkey=CDS;product=RNA degradosome polyphosphate kinase;protein_id=WP_010930171.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2694121 2695161 . + . ID=gene2576;Name=RD04_RS12885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12885;old_locus_tag=RD04_12865 NZ_CP010961.1 Protein Homology CDS 2694121 2695161 . + 0 ID=cds2532;Parent=gene2576;Dbxref=Genbank:WP_014486066.1;Name=WP_014486066.1;gbkey=CDS;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_014486066.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2695296 2696312 . + . ID=gene2577;Name=RD04_RS12890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12890;old_locus_tag=RD04_12870 NZ_CP010961.1 Protein Homology CDS 2695296 2696312 . + 0 ID=cds2533;Parent=gene2577;Dbxref=Genbank:WP_010930169.1;Name=WP_010930169.1;gbkey=CDS;product=phosphate ABC transporter permease subunit PstC;protein_id=WP_010930169.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2696355 2697191 . + . ID=gene2578;Name=RD04_RS12895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12895;old_locus_tag=RD04_12875 NZ_CP010961.1 Protein Homology CDS 2696355 2697191 . + 0 ID=cds2534;Parent=gene2578;Dbxref=Genbank:WP_010930168.1;Name=WP_010930168.1;gbkey=CDS;product=phosphate ABC transporter%2C permease protein PstA;protein_id=WP_010930168.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2697236 2698012 . + . ID=gene2579;Name=RD04_RS12900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12900;old_locus_tag=RD04_12880 NZ_CP010961.1 Protein Homology CDS 2697236 2698012 . + 0 ID=cds2535;Parent=gene2579;Dbxref=Genbank:WP_010930167.1;Name=WP_010930167.1;gbkey=CDS;product=phosphate ABC transporter ATP-binding protein;protein_id=WP_010930167.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2698053 2698129 . + . ID=gene2580;Name=RD04_RS12905;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS12905;old_locus_tag=RD04_12885 NZ_CP010961.1 tRNAscan-SE tRNA 2698053 2698129 . + . ID=rna44;Parent=gene2580;anticodon=(pos:2698087..2698089);gbkey=tRNA;product=tRNA-Pro NZ_CP010961.1 tRNAscan-SE exon 2698053 2698129 . + . ID=id49;Parent=rna44;anticodon=(pos:2698087..2698089);gbkey=tRNA;product=tRNA-Pro NZ_CP010961.1 RefSeq gene 2698428 2699330 . + . ID=gene2581;Name=RD04_RS12910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12910;old_locus_tag=RD04_12890 NZ_CP010961.1 GeneMarkS+ CDS 2698428 2699330 . + 0 ID=cds2536;Parent=gene2581;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2699477 2700379 . + . ID=gene2582;Name=RD04_RS12915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12915;old_locus_tag=RD04_12895 NZ_CP010961.1 GeneMarkS+ CDS 2699477 2700379 . + 0 ID=cds2537;Parent=gene2582;Dbxref=Genbank:WP_039250367.1;Name=WP_039250367.1;gbkey=CDS;product=integrase;protein_id=WP_039250367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2700406 2700870 . - . ID=gene2583;Name=RD04_RS12920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12920;old_locus_tag=RD04_12900 NZ_CP010961.1 Protein Homology CDS 2700406 2700870 . - 0 ID=cds2538;Parent=gene2583;Dbxref=Genbank:WP_003809441.1;Name=WP_003809441.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003809441.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2700867 2702027 . - . ID=gene2584;Name=RD04_RS12925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12925;old_locus_tag=RD04_12905;pseudo=true NZ_CP010961.1 Protein Homology CDS 2700867 2702027 . - 0 ID=cds2539;Parent=gene2584;Note=frameshifted;gbkey=CDS;product=Patatin;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2702077 2704365 . - . ID=gene2585;Name=RD04_RS12930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12930;old_locus_tag=RD04_12910 NZ_CP010961.1 Protein Homology CDS 2702077 2704365 . - 0 ID=cds2540;Parent=gene2585;Dbxref=Genbank:WP_014486065.1;Name=WP_014486065.1;gbkey=CDS;product=malic enzyme;protein_id=WP_014486065.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2704482 2705354 . - . ID=gene2586;Name=RD04_RS12935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12935;old_locus_tag=RD04_12915 NZ_CP010961.1 Protein Homology CDS 2704482 2705354 . - 0 ID=cds2541;Parent=gene2586;Dbxref=Genbank:WP_010930165.1;Name=WP_010930165.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930165.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2705397 2706551 . + . ID=gene2587;Name=RD04_RS12940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12940;old_locus_tag=RD04_12920 NZ_CP010961.1 Protein Homology CDS 2705397 2706551 . + 0 ID=cds2542;Parent=gene2587;Dbxref=Genbank:WP_010930164.1;Name=WP_010930164.1;gbkey=CDS;product=aminotransferase;protein_id=WP_010930164.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2706586 2707416 . - . ID=gene2588;Name=RD04_RS12945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12945;old_locus_tag=RD04_12925 NZ_CP010961.1 Protein Homology CDS 2706586 2707416 . - 0 ID=cds2543;Parent=gene2588;Dbxref=Genbank:WP_010930163.1;Name=WP_010930163.1;gbkey=CDS;product=transglycosylase;protein_id=WP_010930163.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2707500 2709044 . + . ID=gene2589;Name=RD04_RS12950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12950;old_locus_tag=RD04_12930 NZ_CP010961.1 Protein Homology CDS 2707500 2709044 . + 0 ID=cds2544;Parent=gene2589;Dbxref=Genbank:WP_023853525.1;Name=WP_023853525.1;Note=catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol;gbkey=CDS;product=3-octaprenyl-4-hydroxybenzoate carboxy-lyase;protein_id=WP_023853525.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2709087 2709446 . - . ID=gene2590;Name=RD04_RS12955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12955;old_locus_tag=RD04_12935 NZ_CP010961.1 Protein Homology CDS 2709087 2709446 . - 0 ID=cds2545;Parent=gene2590;Dbxref=Genbank:WP_010930161.1;Name=WP_010930161.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930161.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2709448 2709861 . - . ID=gene2591;Name=RD04_RS12960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12960;old_locus_tag=RD04_12940 NZ_CP010961.1 Protein Homology CDS 2709448 2709861 . - 0 ID=cds2546;Parent=gene2591;Dbxref=Genbank:WP_003819794.1;Name=WP_003819794.1;gbkey=CDS;product=membrane protein;protein_id=WP_003819794.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2709902 2710219 . - . ID=gene2592;Name=RD04_RS12965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12965;old_locus_tag=RD04_12945 NZ_CP010961.1 Protein Homology CDS 2709902 2710219 . - 0 ID=cds2547;Parent=gene2592;Dbxref=Genbank:WP_003809432.1;Name=WP_003809432.1;gbkey=CDS;product=membrane protein;protein_id=WP_003809432.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2710304 2711017 . - . ID=gene2593;Name=RD04_RS12970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12970;old_locus_tag=RD04_12950 NZ_CP010961.1 Protein Homology CDS 2710304 2711017 . - 0 ID=cds2548;Parent=gene2593;Dbxref=Genbank:WP_033446315.1;Name=WP_033446315.1;gbkey=CDS;product=membrane protein;protein_id=WP_033446315.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2711284 2712705 . + . ID=gene2594;Name=RD04_RS12975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12975;old_locus_tag=RD04_12955 NZ_CP010961.1 Protein Homology CDS 2711284 2712705 . + 0 ID=cds2549;Parent=gene2594;Dbxref=Genbank:WP_010930160.1;Name=WP_010930160.1;gbkey=CDS;product=siroheme synthase;protein_id=WP_010930160.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2712772 2715396 . - . ID=gene2595;Name=RD04_RS12980;end_range=2715396,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS12980;old_locus_tag=RD04_12960;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2712772 2715396 . - 0 ID=cds2550;Parent=gene2595;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=2715396,.;gbkey=CDS;partial=true;product=pertactin;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2715753 2716769 . - . ID=gene2596;Name=RD04_RS12985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12985;old_locus_tag=RD04_12965 NZ_CP010961.1 Protein Homology CDS 2715753 2716769 . - 0 ID=cds2551;Parent=gene2596;Dbxref=Genbank:WP_062826652.1;Name=WP_062826652.1;gbkey=CDS;product=transposase;protein_id=WP_062826652.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2717105 2717746 . - . ID=gene2597;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=RD04_RS12990;old_locus_tag=RD04_12970 NZ_CP010961.1 Protein Homology CDS 2717105 2717746 . - 0 ID=cds2552;Parent=gene2597;Dbxref=Genbank:WP_010930157.1;Name=WP_010930157.1;Note=Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate;gbkey=CDS;gene=upp;product=uracil phosphoribosyltransferase;protein_id=WP_010930157.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2717837 2719273 . - . ID=gene2598;Name=RD04_RS12995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS12995;old_locus_tag=RD04_12975 NZ_CP010961.1 Protein Homology CDS 2717837 2719273 . - 0 ID=cds2553;Parent=gene2598;Dbxref=Genbank:WP_003809423.1;Name=WP_003809423.1;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_003809423.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2719431 2720504 . + . ID=gene2599;Name=RD04_RS13000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13000;old_locus_tag=RD04_12980 NZ_CP010961.1 Protein Homology CDS 2719431 2720504 . + 0 ID=cds2554;Parent=gene2599;Dbxref=Genbank:WP_023853534.1;Name=WP_023853534.1;gbkey=CDS;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=WP_023853534.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2720501 2721637 . + . ID=gene2600;Name=RD04_RS13005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13005;old_locus_tag=RD04_12985 NZ_CP010961.1 Protein Homology CDS 2720501 2721637 . + 0 ID=cds2555;Parent=gene2600;Dbxref=Genbank:WP_010930155.1;Name=WP_010930155.1;gbkey=CDS;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=WP_010930155.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2721781 2722125 . + . ID=gene2601;Name=RD04_RS13010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13010;old_locus_tag=RD04_12990 NZ_CP010961.1 Protein Homology CDS 2721781 2722125 . + 0 ID=cds2556;Parent=gene2601;Dbxref=Genbank:WP_003809416.1;Name=WP_003809416.1;gbkey=CDS;product=preprotein translocase subunit YajC;protein_id=WP_003809416.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2722192 2724072 . + . ID=gene2602;Name=RD04_RS13015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13015;old_locus_tag=RD04_12995 NZ_CP010961.1 Protein Homology CDS 2722192 2724072 . + 0 ID=cds2557;Parent=gene2602;Dbxref=Genbank:WP_010930154.1;Name=WP_010930154.1;gbkey=CDS;product=preprotein translocase subunit SecD;protein_id=WP_010930154.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2724122 2725057 . + . ID=gene2603;Name=RD04_RS13020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13020;old_locus_tag=RD04_13000 NZ_CP010961.1 Protein Homology CDS 2724122 2725057 . + 0 ID=cds2558;Parent=gene2603;Dbxref=Genbank:WP_003809411.1;Name=WP_003809411.1;gbkey=CDS;product=preprotein translocase subunit SecF;protein_id=WP_003809411.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2725390 2726406 . + . ID=gene2604;Name=RD04_RS13025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13025;old_locus_tag=RD04_13005 NZ_CP010961.1 Protein Homology CDS 2725390 2726406 . + 0 ID=cds2559;Parent=gene2604;Dbxref=Genbank:WP_062826590.1;Name=WP_062826590.1;gbkey=CDS;product=transposase;protein_id=WP_062826590.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2726461 2727187 . - . ID=gene2605;Name=RD04_RS13030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13030;old_locus_tag=RD04_13010;pseudo=true NZ_CP010961.1 Protein Homology CDS 2726461 2727187 . - 0 ID=cds2560;Parent=gene2605;Note=frameshifted;gbkey=CDS;product=acid phosphatase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2727344 2728771 . + . ID=gene2606;Name=RD04_RS13035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13035;old_locus_tag=RD04_13015 NZ_CP010961.1 Protein Homology CDS 2727344 2728771 . + 0 ID=cds2561;Parent=gene2606;Dbxref=Genbank:WP_015041211.1;Name=WP_015041211.1;Note=catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A);gbkey=CDS;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=WP_015041211.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2728768 2729790 . + . ID=gene2607;Name=RD04_RS13040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13040;old_locus_tag=RD04_13020 NZ_CP010961.1 Protein Homology CDS 2728768 2729790 . + 0 ID=cds2562;Parent=gene2607;Dbxref=Genbank:WP_010930151.1;Name=WP_010930151.1;gbkey=CDS;product=phosphate starvation protein PhoH;protein_id=WP_010930151.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2729780 2730253 . + . ID=gene2608;Name=RD04_RS13045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13045;old_locus_tag=RD04_13025 NZ_CP010961.1 Protein Homology CDS 2729780 2730253 . + 0 ID=cds2563;Parent=gene2608;Dbxref=Genbank:WP_003809396.1;Name=WP_003809396.1;gbkey=CDS;product=endoribonuclease YbeY;protein_id=WP_003809396.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2730394 2731281 . + . ID=gene2609;Name=RD04_RS13050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13050;old_locus_tag=RD04_13030 NZ_CP010961.1 Protein Homology CDS 2730394 2731281 . + 0 ID=cds2564;Parent=gene2609;Dbxref=Genbank:WP_010930149.1;Name=WP_010930149.1;gbkey=CDS;product=magnesium transporter;protein_id=WP_010930149.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2731278 2732921 . + . ID=gene2610;Name=RD04_RS13055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13055;old_locus_tag=RD04_13035 NZ_CP010961.1 Protein Homology CDS 2731278 2732921 . + 0 ID=cds2565;Parent=gene2610;Dbxref=Genbank:WP_014486064.1;Name=WP_014486064.1;gbkey=CDS;product=apolipoprotein N-acyltransferase;protein_id=WP_014486064.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2732918 2733925 . - . ID=gene2611;Name=RD04_RS13060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13060;old_locus_tag=RD04_13040 NZ_CP010961.1 Protein Homology CDS 2732918 2733925 . - 0 ID=cds2566;Parent=gene2611;Dbxref=Genbank:WP_003819773.1;Name=WP_003819773.1;gbkey=CDS;product=aldo/keto reductase;protein_id=WP_003819773.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2734226 2734301 . + . ID=gene2612;Name=RD04_RS13065;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS13065;old_locus_tag=RD04_13045 NZ_CP010961.1 tRNAscan-SE tRNA 2734226 2734301 . + . ID=rna45;Parent=gene2612;anticodon=(pos:2734259..2734261);gbkey=tRNA;product=tRNA-Ala NZ_CP010961.1 tRNAscan-SE exon 2734226 2734301 . + . ID=id50;Parent=rna45;anticodon=(pos:2734259..2734261);gbkey=tRNA;product=tRNA-Ala NZ_CP010961.1 RefSeq gene 2734333 2734408 . + . ID=gene2613;Name=RD04_RS13070;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS13070;old_locus_tag=RD04_13050 NZ_CP010961.1 tRNAscan-SE tRNA 2734333 2734408 . + . ID=rna46;Parent=gene2613;anticodon=(pos:2734367..2734369);gbkey=tRNA;product=tRNA-Glu NZ_CP010961.1 tRNAscan-SE exon 2734333 2734408 . + . ID=id51;Parent=rna46;anticodon=(pos:2734367..2734369);gbkey=tRNA;product=tRNA-Glu NZ_CP010961.1 RefSeq gene 2734444 2734520 . + . ID=gene2614;Name=RD04_RS13075;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS13075;old_locus_tag=RD04_13055 NZ_CP010961.1 tRNAscan-SE tRNA 2734444 2734520 . + . ID=rna47;Parent=gene2614;anticodon=(pos:2734478..2734480);gbkey=tRNA;product=tRNA-Asp NZ_CP010961.1 tRNAscan-SE exon 2734444 2734520 . + . ID=id52;Parent=rna47;anticodon=(pos:2734478..2734480);gbkey=tRNA;product=tRNA-Asp NZ_CP010961.1 RefSeq gene 2734756 2735772 . + . ID=gene2615;Name=RD04_RS13080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13080;old_locus_tag=RD04_13060 NZ_CP010961.1 Protein Homology CDS 2734756 2735772 . + 0 ID=cds2567;Parent=gene2615;Dbxref=Genbank:WP_010929632.1;Name=WP_010929632.1;gbkey=CDS;product=transposase;protein_id=WP_010929632.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2735872 2736504 . - . ID=gene2616;Name=RD04_RS13085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13085;old_locus_tag=RD04_13065 NZ_CP010961.1 Protein Homology CDS 2735872 2736504 . - 0 ID=cds2568;Parent=gene2616;Dbxref=Genbank:WP_003817162.1;Name=WP_003817162.1;gbkey=CDS;product=protein phosphatase CheZ;protein_id=WP_003817162.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2736513 2736902 . - . ID=gene2617;Name=RD04_RS13090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13090;old_locus_tag=RD04_13070 NZ_CP010961.1 Protein Homology CDS 2736513 2736902 . - 0 ID=cds2569;Parent=gene2617;Dbxref=Genbank:WP_003811911.1;Name=WP_003811911.1;Note=chemotaxis regulator that%2C when phosphorylated%2C interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble;gbkey=CDS;product=two-component system response regulator;protein_id=WP_003811911.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2736955 2738007 . - . ID=gene2618;Name=RD04_RS13095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13095;old_locus_tag=RD04_13075 NZ_CP010961.1 Protein Homology CDS 2736955 2738007 . - 0 ID=cds2570;Parent=gene2618;Dbxref=Genbank:WP_010930146.1;Name=WP_010930146.1;gbkey=CDS;product=chemotaxis response regulator protein-glutamate methylesterase;protein_id=WP_010930146.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2738004 2738477 . - . ID=gene2619;Name=RD04_RS13100;end_range=2738477,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13100;old_locus_tag=RD04_13080;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2738004 2738477 . - 0 ID=cds2571;Parent=gene2619;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=2738477,.;gbkey=CDS;partial=true;product=chemotaxis protein CheR;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2738423 2739325 . - . ID=gene2620;Name=RD04_RS13105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13105;old_locus_tag=RD04_13085 NZ_CP010961.1 GeneMarkS+ CDS 2738423 2739325 . - 0 ID=cds2572;Parent=gene2620;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2739472 2740374 . - . ID=gene2621;Name=RD04_RS13110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13110;old_locus_tag=RD04_13090 NZ_CP010961.1 GeneMarkS+ CDS 2739472 2740374 . - 0 ID=cds2573;Parent=gene2621;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2740519 2740960 . - . ID=gene2622;Name=RD04_RS13115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13115;old_locus_tag=RD04_13095;partial=true;pseudo=true;start_range=.,2740519 NZ_CP010961.1 Protein Homology CDS 2740519 2740960 . - 0 ID=cds2574;Parent=gene2622;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=chemotaxis protein CheR;pseudo=true;start_range=.,2740519;transl_table=11 NZ_CP010961.1 RefSeq gene 2740969 2742675 . - . ID=gene2623;Name=RD04_RS13120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13120;old_locus_tag=RD04_13100 NZ_CP010961.1 Protein Homology CDS 2740969 2742675 . - 0 ID=cds2575;Parent=gene2623;Dbxref=Genbank:WP_010930145.1;Name=WP_010930145.1;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_010930145.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2742749 2743249 . - . ID=gene2624;Name=RD04_RS13125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13125;old_locus_tag=RD04_13105 NZ_CP010961.1 Protein Homology CDS 2742749 2743249 . - 0 ID=cds2576;Parent=gene2624;Dbxref=Genbank:WP_003811919.1;Name=WP_003811919.1;gbkey=CDS;product=chemotaxis protein CheW;protein_id=WP_003811919.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2743264 2745321 . - . ID=gene2625;Name=RD04_RS13130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13130;old_locus_tag=RD04_13110 NZ_CP010961.1 Protein Homology CDS 2743264 2745321 . - 0 ID=cds2577;Parent=gene2625;Dbxref=Genbank:WP_010930144.1;Name=WP_010930144.1;gbkey=CDS;product=chemotaxis protein CheA;protein_id=WP_010930144.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2745348 2745641 . - . ID=gene2626;Name=RD04_RS13135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13135;old_locus_tag=RD04_13115 NZ_CP010961.1 Protein Homology CDS 2745348 2745641 . - 0 ID=cds2578;Parent=gene2626;Dbxref=Genbank:WP_019247393.1;Name=WP_019247393.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_019247393.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2745743 2746690 . - . ID=gene2627;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=RD04_RS13140;old_locus_tag=RD04_13120 NZ_CP010961.1 Protein Homology CDS 2745743 2746690 . - 0 ID=cds2579;Parent=gene2627;Dbxref=Genbank:WP_003817154.1;Name=WP_003817154.1;Note=with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine;gbkey=CDS;gene=motB;product=chemotaxis protein MotB;protein_id=WP_003817154.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2746703 2747578 . - . ID=gene2628;Name=RD04_RS13145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13145;old_locus_tag=RD04_13125 NZ_CP010961.1 Protein Homology CDS 2746703 2747578 . - 0 ID=cds2580;Parent=gene2628;Dbxref=Genbank:WP_003811927.1;Name=WP_003811927.1;Note=With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine;gbkey=CDS;product=chemotaxis protein MotA;protein_id=WP_003811927.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2747699 2748259 . - . ID=gene2629;Name=RD04_RS13150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13150;old_locus_tag=RD04_13130 NZ_CP010961.1 Protein Homology CDS 2747699 2748259 . - 0 ID=cds2581;Parent=gene2629;Dbxref=Genbank:WP_003811929.1;Name=WP_003811929.1;Note=With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems;gbkey=CDS;product=transcriptional activator FlhC;protein_id=WP_003811929.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2748294 2748617 . - . ID=gene2630;Name=RD04_RS13155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13155;old_locus_tag=RD04_13135 NZ_CP010961.1 Protein Homology CDS 2748294 2748617 . - 0 ID=cds2582;Parent=gene2630;Dbxref=Genbank:WP_010930143.1;Name=WP_010930143.1;gbkey=CDS;product=flagellar transcriptional activator FlhD;protein_id=WP_010930143.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2749053 2749790 . + . ID=gene2631;Name=fliA;gbkey=Gene;gene=fliA;gene_biotype=protein_coding;locus_tag=RD04_RS13160;old_locus_tag=RD04_13140 NZ_CP010961.1 Protein Homology CDS 2749053 2749790 . + 0 ID=cds2583;Parent=gene2631;Dbxref=Genbank:WP_003811933.1;Name=WP_003811933.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor directs late flagellar biosynthesis genes;gbkey=CDS;gene=fliA;product=RNA polymerase sigma factor FliA;protein_id=WP_003811933.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2750089 2750991 . - . ID=gene2632;Name=RD04_RS13165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13165;old_locus_tag=RD04_13145 NZ_CP010961.1 GeneMarkS+ CDS 2750089 2750991 . - 0 ID=cds2584;Parent=gene2632;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2751283 2751546 . + . ID=gene2633;Name=RD04_RS13170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13170;old_locus_tag=RD04_13150 NZ_CP010961.1 Protein Homology CDS 2751283 2751546 . + 0 ID=cds2585;Parent=gene2633;Dbxref=Genbank:WP_003809486.1;Name=WP_003809486.1;Note=stimulates the activities of the other two initiation factors%2C IF-2 and IF-3;gbkey=CDS;product=translation initiation factor IF-1;protein_id=WP_003809486.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2751620 2751901 . + . ID=gene2634;Name=RD04_RS13175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13175;old_locus_tag=RD04_13155 NZ_CP010961.1 Protein Homology CDS 2751620 2751901 . + 0 ID=cds2586;Parent=gene2634;Dbxref=Genbank:WP_003819817.1;Name=WP_003819817.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003819817.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2751918 2752760 . - . ID=gene2635;Name=RD04_RS13180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13180;old_locus_tag=RD04_13160 NZ_CP010961.1 Protein Homology CDS 2751918 2752760 . - 0 ID=cds2587;Parent=gene2635;Dbxref=Genbank:WP_033446314.1;Name=WP_033446314.1;gbkey=CDS;product=peptidase;protein_id=WP_033446314.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2752775 2753110 . - . ID=gene2636;Name=RD04_RS13185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13185;old_locus_tag=RD04_13165 NZ_CP010961.1 Protein Homology CDS 2752775 2753110 . - 0 ID=cds2588;Parent=gene2636;Dbxref=Genbank:WP_003809479.1;Name=WP_003809479.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003809479.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2753164 2753814 . - . ID=gene2637;Name=RD04_RS13190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13190;old_locus_tag=RD04_13170 NZ_CP010961.1 Protein Homology CDS 2753164 2753814 . - 0 ID=cds2589;Parent=gene2637;Dbxref=Genbank:WP_010930141.1;Name=WP_010930141.1;gbkey=CDS;product=molybdopterin adenylyltransferase;protein_id=WP_010930141.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2753999 2755474 . + . ID=gene2638;Name=RD04_RS13195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13195;old_locus_tag=RD04_13175 NZ_CP010961.1 Protein Homology CDS 2753999 2755474 . + 0 ID=cds2590;Parent=gene2638;Dbxref=Genbank:WP_010930140.1;Name=WP_010930140.1;gbkey=CDS;product=anion permease;protein_id=WP_010930140.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2755495 2756439 . - . ID=gene2639;Name=RD04_RS13200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13200;old_locus_tag=RD04_13180 NZ_CP010961.1 Protein Homology CDS 2755495 2756439 . - 0 ID=cds2591;Parent=gene2639;Dbxref=Genbank:WP_019247197.1;Name=WP_019247197.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247197.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2756485 2756802 . - . ID=gene2640;Name=RD04_RS13205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13205;old_locus_tag=RD04_13185 NZ_CP010961.1 Protein Homology CDS 2756485 2756802 . - 0 ID=cds2592;Parent=gene2640;Dbxref=Genbank:WP_003809467.1;Name=WP_003809467.1;gbkey=CDS;product=MerR family transcriptional regulator;protein_id=WP_003809467.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2756805 2757742 . - . ID=gene2641;Name=RD04_RS13210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13210;old_locus_tag=RD04_13190;pseudo=true NZ_CP010961.1 Protein Homology CDS 2756805 2757742 . - 0 ID=cds2593;Parent=gene2641;Note=frameshifted;gbkey=CDS;product=cytochrome C biogenesis protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2757920 2758405 . + . ID=gene2642;Name=RD04_RS13215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13215;old_locus_tag=RD04_13195 NZ_CP010961.1 Protein Homology CDS 2757920 2758405 . + 0 ID=cds2594;Parent=gene2642;Dbxref=Genbank:WP_003819814.1;Name=WP_003819814.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_003819814.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2758424 2758972 . + . ID=gene2643;Name=RD04_RS13220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13220;old_locus_tag=RD04_13200 NZ_CP010961.1 Protein Homology CDS 2758424 2758972 . + 0 ID=cds2595;Parent=gene2643;Dbxref=Genbank:WP_010930138.1;Name=WP_010930138.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_010930138.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2759249 2760199 . + . ID=gene2644;Name=RD04_RS13225;end_range=2760199,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13225;old_locus_tag=RD04_13205;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2759249 2760199 . + 0 ID=cds2596;Parent=gene2644;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=2760199,.;gbkey=CDS;partial=true;product=integrase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2760486 2761127 . + . ID=gene2645;Name=RD04_RS13230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13230;old_locus_tag=RD04_13210 NZ_CP010961.1 Protein Homology CDS 2760486 2761127 . + 0 ID=cds2597;Parent=gene2645;Dbxref=Genbank:WP_010930137.1;Name=WP_010930137.1;Note=catalyzes the formation of 2%2C4-dinitrophenyl-S-glutathione from 1-chloro-2%2C4-dinitrobenzene and glutathione;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_010930137.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2761282 2763630 . + . ID=gene2646;Name=RD04_RS13235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13235;old_locus_tag=RD04_13215 NZ_CP010961.1 Protein Homology CDS 2761282 2763630 . + 0 ID=cds2598;Parent=gene2646;Dbxref=Genbank:WP_010930136.1;Name=WP_010930136.1;gbkey=CDS;product=3-hydroxyalkanoate synthetase;protein_id=WP_010930136.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2763627 2764565 . + . ID=gene2647;Name=RD04_RS13240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13240;old_locus_tag=RD04_13220 NZ_CP010961.1 Protein Homology CDS 2763627 2764565 . + 0 ID=cds2599;Parent=gene2647;Dbxref=Genbank:WP_003809454.1;Name=WP_003809454.1;Note=catalyzes the formation of acetyl phosphate from acetyl-CoA and phosphate%3B can also act with other short-chain acyl-CoAs;gbkey=CDS;product=phosphate acetyltransferase;protein_id=WP_003809454.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2764591 2765781 . + . ID=gene2648;Name=RD04_RS13245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13245;old_locus_tag=RD04_13225 NZ_CP010961.1 Protein Homology CDS 2764591 2765781 . + 0 ID=cds2600;Parent=gene2648;Dbxref=Genbank:WP_010930135.1;Name=WP_010930135.1;gbkey=CDS;product=acetate kinase;protein_id=WP_010930135.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2765778 2766551 . + . ID=gene2649;Name=RD04_RS13250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13250;old_locus_tag=RD04_13230 NZ_CP010961.1 Protein Homology CDS 2765778 2766551 . + 0 ID=cds2601;Parent=gene2649;Dbxref=Genbank:WP_010930134.1;Name=WP_010930134.1;gbkey=CDS;product=enoyl-[acyl-carrier-protein] reductase;protein_id=WP_010930134.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2766581 2767774 . - . ID=gene2650;Name=RD04_RS13255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13255;old_locus_tag=RD04_13235 NZ_CP010961.1 Protein Homology CDS 2766581 2767774 . - 0 ID=cds2602;Parent=gene2650;Dbxref=Genbank:WP_010930133.1;Name=WP_010930133.1;gbkey=CDS;product=phosphoglycerate kinase;protein_id=WP_010930133.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2767892 2768902 . - . ID=gene2651;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=RD04_RS13260;old_locus_tag=RD04_13240 NZ_CP010961.1 Protein Homology CDS 2767892 2768902 . - 0 ID=cds2603;Parent=gene2651;Dbxref=Genbank:WP_010930132.1;Name=WP_010930132.1;Note=required for glycolysis%3B catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate;gbkey=CDS;gene=gapA;product=type I glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_010930132.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2768920 2770956 . - . ID=gene2652;Name=RD04_RS13265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13265;old_locus_tag=RD04_13245 NZ_CP010961.1 Protein Homology CDS 2768920 2770956 . - 0 ID=cds2604;Parent=gene2652;Dbxref=Genbank:WP_010930131.1;Name=WP_010930131.1;Note=catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase;gbkey=CDS;product=transketolase;protein_id=WP_010930131.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2771151 2771891 . + . ID=gene2653;Name=RD04_RS13270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13270;old_locus_tag=RD04_13250 NZ_CP010961.1 Protein Homology CDS 2771151 2771891 . + 0 ID=cds2605;Parent=gene2653;Dbxref=Genbank:WP_010930130.1;Name=WP_010930130.1;gbkey=CDS;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=WP_010930130.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2772038 2772940 . + . ID=gene2654;Name=RD04_RS13275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13275;old_locus_tag=RD04_13255 NZ_CP010961.1 GeneMarkS+ CDS 2772038 2772940 . + 0 ID=cds2606;Parent=gene2654;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2773039 2773989 . + . ID=gene2655;Name=RD04_RS13280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13280;old_locus_tag=RD04_13260 NZ_CP010961.1 Protein Homology CDS 2773039 2773989 . + 0 ID=cds2607;Parent=gene2655;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2774032 2775207 . + . ID=gene2656;Name=RD04_RS13285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13285;old_locus_tag=RD04_13265 NZ_CP010961.1 Protein Homology CDS 2774032 2775207 . + 0 ID=cds2608;Parent=gene2656;Dbxref=Genbank:WP_003817151.1;Name=WP_003817151.1;Note=structural flagella protein;gbkey=CDS;product=flagellin;protein_id=WP_003817151.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2775429 2777219 . - . ID=gene2657;Name=RD04_RS13290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13290;old_locus_tag=RD04_13270 NZ_CP010961.1 Protein Homology CDS 2775429 2777219 . - 0 ID=cds2609;Parent=gene2657;Dbxref=Genbank:WP_010930129.1;Name=WP_010930129.1;gbkey=CDS;product=dihydrolipoamide dehydrogenase;protein_id=WP_010930129.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2777232 2778892 . - . ID=gene2658;Name=RD04_RS13295;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13295;old_locus_tag=RD04_13275;pseudo=true NZ_CP010961.1 Protein Homology CDS 2777232 2778892 . - 0 ID=cds2610;Parent=gene2658;Note=frameshifted;gbkey=CDS;product=dihydrolipoamide acetyltransferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2778905 2781610 . - . ID=gene2659;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=RD04_RS13300;old_locus_tag=RD04_13280 NZ_CP010961.1 Protein Homology CDS 2778905 2781610 . - 0 ID=cds2611;Parent=gene2659;Dbxref=Genbank:WP_010930127.1;Name=WP_010930127.1;Note=E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC;gbkey=CDS;gene=aceE;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;protein_id=WP_010930127.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2781903 2783657 . + . ID=gene2660;Name=RD04_RS13305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13305;old_locus_tag=RD04_13285 NZ_CP010961.1 Protein Homology CDS 2781903 2783657 . + 0 ID=cds2612;Parent=gene2660;Dbxref=Genbank:WP_003817147.1;Name=WP_003817147.1;gbkey=CDS;product=PAS domain-containing sensor histidine kinase;protein_id=WP_003817147.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2783654 2784280 . + . ID=gene2661;Name=RD04_RS13310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13310;old_locus_tag=RD04_13290 NZ_CP010961.1 Protein Homology CDS 2783654 2784280 . + 0 ID=cds2613;Parent=gene2661;Dbxref=Genbank:WP_010930126.1;Name=WP_010930126.1;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_010930126.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2784277 2785128 . + . ID=gene2662;Name=RD04_RS13315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13315;old_locus_tag=RD04_13295 NZ_CP010961.1 Protein Homology CDS 2784277 2785128 . + 0 ID=cds2614;Parent=gene2662;Dbxref=Genbank:WP_003811948.1;Name=WP_003811948.1;gbkey=CDS;product=bifunctional 5%2C10-methylene-tetrahydrofolate dehydrogenase/5%2C10-methylene-tetrahydrofolate cyclohydrolase;protein_id=WP_003811948.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2785258 2787318 . + . ID=gene2663;Name=RD04_RS13320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13320;old_locus_tag=RD04_13300 NZ_CP010961.1 Protein Homology CDS 2785258 2787318 . + 0 ID=cds2615;Parent=gene2663;Dbxref=Genbank:WP_010930125.1;Name=WP_010930125.1;gbkey=CDS;product=oligopeptidase A;protein_id=WP_010930125.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2787505 2788119 . + . ID=gene2664;Name=RD04_RS13325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13325;old_locus_tag=RD04_13305 NZ_CP010961.1 Protein Homology CDS 2787505 2788119 . + 0 ID=cds2616;Parent=gene2664;Dbxref=Genbank:WP_010930124.1;Name=WP_010930124.1;gbkey=CDS;product=electron transporter;protein_id=WP_010930124.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2788265 2788516 . + . ID=gene2665;Name=RD04_RS13330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13330;old_locus_tag=RD04_13310 NZ_CP010961.1 Protein Homology CDS 2788265 2788516 . + 0 ID=cds2617;Parent=gene2665;Dbxref=Genbank:WP_010930123.1;Name=WP_010930123.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930123.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2788586 2789968 . - . ID=gene2666;Name=RD04_RS13335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13335;old_locus_tag=RD04_13315 NZ_CP010961.1 Protein Homology CDS 2788586 2789968 . - 0 ID=cds2618;Parent=gene2666;Dbxref=Genbank:WP_014486063.1;Name=WP_014486063.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_014486063.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2789965 2793140 . - . ID=gene2667;Name=RD04_RS13340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13340;old_locus_tag=RD04_13320;pseudo=true NZ_CP010961.1 Protein Homology CDS 2789965 2793140 . - 0 ID=cds2619;Parent=gene2667;Note=frameshifted;gbkey=CDS;product=aminoglycoside/multidrug transporter subunit AcrD;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2793227 2793697 . - . ID=gene2668;Name=RD04_RS13345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13345;old_locus_tag=RD04_13325;partial=true;pseudo=true;start_range=.,2793227 NZ_CP010961.1 Protein Homology CDS 2793227 2793697 . - 0 ID=cds2620;Parent=gene2668;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=efflux transporter periplasmic adaptor subunit;pseudo=true;start_range=.,2793227;transl_table=11 NZ_CP010961.1 RefSeq gene 2793948 2794865 . + . ID=gene2669;Name=RD04_RS13350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13350;old_locus_tag=RD04_13330 NZ_CP010961.1 Protein Homology CDS 2793948 2794865 . + 0 ID=cds2621;Parent=gene2669;Dbxref=Genbank:WP_029443805.1;Name=WP_029443805.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_029443805.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2794917 2795648 . - . ID=gene2670;Name=RD04_RS13355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13355;old_locus_tag=RD04_13335 NZ_CP010961.1 Protein Homology CDS 2794917 2795648 . - 0 ID=cds2622;Parent=gene2670;Dbxref=Genbank:WP_010930119.1;Name=WP_010930119.1;gbkey=CDS;product=RNA pseudouridylate synthase;protein_id=WP_010930119.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2795708 2796280 . + . ID=gene2671;Name=RD04_RS13360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13360;old_locus_tag=RD04_13340 NZ_CP010961.1 Protein Homology CDS 2795708 2796280 . + 0 ID=cds2623;Parent=gene2671;Dbxref=Genbank:WP_010926548.1;Name=WP_010926548.1;gbkey=CDS;product=chorismate--pyruvate lyase;protein_id=WP_010926548.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2796353 2797532 . + . ID=gene2672;Name=RD04_RS13365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13365;old_locus_tag=RD04_13345;pseudo=true NZ_CP010961.1 Protein Homology CDS 2796353 2797532 . + 0 ID=cds2624;Parent=gene2672;Note=frameshifted;gbkey=CDS;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2797789 2798805 . + . ID=gene2673;Name=RD04_RS13370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13370;old_locus_tag=RD04_13350 NZ_CP010961.1 Protein Homology CDS 2797789 2798805 . + 0 ID=cds2625;Parent=gene2673;Dbxref=Genbank:WP_010929632.1;Name=WP_010929632.1;gbkey=CDS;product=transposase;protein_id=WP_010929632.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2798943 2799992 . - . ID=gene2674;Name=RD04_RS13375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13375;old_locus_tag=RD04_13355 NZ_CP010961.1 Protein Homology CDS 2798943 2799992 . - 0 ID=cds2626;Parent=gene2674;Dbxref=Genbank:WP_010930118.1;Name=WP_010930118.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010930118.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2800094 2800780 . - . ID=gene2675;Name=RD04_RS13380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13380;old_locus_tag=RD04_13360 NZ_CP010961.1 Protein Homology CDS 2800094 2800780 . - 0 ID=cds2627;Parent=gene2675;Dbxref=Genbank:WP_019247333.1;Name=WP_019247333.1;gbkey=CDS;product=coenzyme A pyrophosphatase;protein_id=WP_019247333.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2801030 2801410 . - . ID=gene2676;Name=RD04_RS13385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13385;old_locus_tag=RD04_13365 NZ_CP010961.1 Protein Homology CDS 2801030 2801410 . - 0 ID=cds2628;Parent=gene2676;Dbxref=Genbank:WP_003813315.1;Name=WP_003813315.1;gbkey=CDS;product=50S ribosomal protein L19;protein_id=WP_003813315.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2801716 2802588 . + . ID=gene2677;Name=RD04_RS13390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13390;old_locus_tag=RD04_13370 NZ_CP010961.1 Protein Homology CDS 2801716 2802588 . + 0 ID=cds2629;Parent=gene2677;Dbxref=Genbank:WP_014905652.1;Name=WP_014905652.1;gbkey=CDS;product=DMT transporter permease;protein_id=WP_014905652.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2802596 2802976 . - . ID=gene2678;Name=RD04_RS13395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13395;old_locus_tag=RD04_13375 NZ_CP010961.1 Protein Homology CDS 2802596 2802976 . - 0 ID=cds2630;Parent=gene2678;Dbxref=Genbank:WP_023852686.1;Name=WP_023852686.1;gbkey=CDS;product=alpha-ketoglutarate decarboxylase;protein_id=WP_023852686.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2803130 2804404 . - . ID=gene2679;Name=RD04_RS13400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13400;old_locus_tag=RD04_13380 NZ_CP010961.1 Protein Homology CDS 2803130 2804404 . - 0 ID=cds2631;Parent=gene2679;Dbxref=Genbank:WP_023852693.1;Name=WP_023852693.1;gbkey=CDS;product=radical SAM domain protein;protein_id=WP_023852693.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2804593 2805839 . - . ID=gene2680;Name=RD04_RS13405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13405;old_locus_tag=RD04_13385;pseudo=true NZ_CP010961.1 Protein Homology CDS 2804593 2805839 . - 0 ID=cds2632;Parent=gene2680;Note=frameshifted;gbkey=CDS;product=sulfate adenylyltransferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2805892 2806800 . - . ID=gene2681;Name=RD04_RS13410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13410;old_locus_tag=RD04_13390 NZ_CP010961.1 Protein Homology CDS 2805892 2806800 . - 0 ID=cds2633;Parent=gene2681;Dbxref=Genbank:WP_010930113.1;Name=WP_010930113.1;Note=with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP;gbkey=CDS;product=sulfate adenylyltransferase small subunit;protein_id=WP_010930113.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2806858 2807601 . - . ID=gene2682;Name=RD04_RS13415;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13415;old_locus_tag=RD04_13395;partial=true;pseudo=true;start_range=.,2806858 NZ_CP010961.1 Protein Homology CDS 2806858 2807601 . - 0 ID=cds2634;Parent=gene2682;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=phosphoadenosine phosphosulfate reductase;pseudo=true;start_range=.,2806858;transl_table=11 NZ_CP010961.1 RefSeq gene 2807598 2808662 . - . ID=gene2683;Name=RD04_RS13420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13420;old_locus_tag=RD04_13400 NZ_CP010961.1 Protein Homology CDS 2807598 2808662 . - 0 ID=cds2635;Parent=gene2683;Dbxref=Genbank:WP_010930112.1;Name=WP_010930112.1;gbkey=CDS;product=sulfate/thiosulfate import ATP-binding protein CysA;protein_id=WP_010930112.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2808687 2809469 . - . ID=gene2684;Name=RD04_RS13425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13425;old_locus_tag=RD04_13405 NZ_CP010961.1 Protein Homology CDS 2808687 2809469 . - 0 ID=cds2636;Parent=gene2684;Dbxref=Genbank:WP_019247328.1;Name=WP_019247328.1;gbkey=CDS;product=sulfate ABC transporter permease subunit CysW;protein_id=WP_019247328.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2809584 2810258 . - . ID=gene2685;Name=RD04_RS13430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13430;old_locus_tag=RD04_13410 NZ_CP010961.1 Protein Homology CDS 2809584 2810258 . - 0 ID=cds2637;Parent=gene2685;Dbxref=Genbank:WP_019247327.1;Name=WP_019247327.1;gbkey=CDS;product=sulfate ABC transporter permease subunit CysT;protein_id=WP_019247327.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2810280 2810483 . - . ID=gene2686;Name=RD04_RS13435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13435;old_locus_tag=RD04_13415 NZ_CP010961.1 Protein Homology CDS 2810280 2810483 . - 0 ID=cds2638;Parent=gene2686;Dbxref=Genbank:WP_019247326.1;Name=WP_019247326.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247326.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2810499 2811533 . - . ID=gene2687;Name=RD04_RS13440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13440;old_locus_tag=RD04_13420 NZ_CP010961.1 Protein Homology CDS 2810499 2811533 . - 0 ID=cds2639;Parent=gene2687;Dbxref=Genbank:WP_003821528.1;Name=WP_003821528.1;gbkey=CDS;product=sulfate transporter subunit;protein_id=WP_003821528.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2811723 2812364 . - . ID=gene2688;Name=RD04_RS13445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13445;old_locus_tag=RD04_13425 NZ_CP010961.1 Protein Homology CDS 2811723 2812364 . - 0 ID=cds2640;Parent=gene2688;Dbxref=Genbank:WP_003813333.1;Name=WP_003813333.1;gbkey=CDS;product=peroxidase;protein_id=WP_003813333.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2812447 2814273 . - . ID=gene2689;Name=RD04_RS13450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13450;old_locus_tag=RD04_13430 NZ_CP010961.1 Protein Homology CDS 2812447 2814273 . - 0 ID=cds2641;Parent=gene2689;Dbxref=Genbank:WP_003821527.1;Name=WP_003821527.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_003821527.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2814517 2815446 . - . ID=gene2690;Name=RD04_RS13455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13455;old_locus_tag=RD04_13435 NZ_CP010961.1 Protein Homology CDS 2814517 2815446 . - 0 ID=cds2642;Parent=gene2690;Dbxref=Genbank:WP_010930111.1;Name=WP_010930111.1;gbkey=CDS;product=electron transfer flavoprotein subunit alpha;protein_id=WP_010930111.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2815446 2816195 . - . ID=gene2691;Name=RD04_RS13460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13460;old_locus_tag=RD04_13440 NZ_CP010961.1 Protein Homology CDS 2815446 2816195 . - 0 ID=cds2643;Parent=gene2691;Dbxref=Genbank:WP_010930110.1;Name=WP_010930110.1;gbkey=CDS;product=electron transfer flavoprotein subunit beta;protein_id=WP_010930110.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2816267 2817181 . - . ID=gene2692;Name=RD04_RS13465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13465;old_locus_tag=RD04_13445 NZ_CP010961.1 Protein Homology CDS 2816267 2817181 . - 0 ID=cds2644;Parent=gene2692;Dbxref=Genbank:WP_003821521.1;Name=WP_003821521.1;gbkey=CDS;product=histone deacetylase;protein_id=WP_003821521.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2817201 2818346 . + . ID=gene2693;Name=RD04_RS13470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13470;old_locus_tag=RD04_13450 NZ_CP010961.1 Protein Homology CDS 2817201 2818346 . + 0 ID=cds2645;Parent=gene2693;Dbxref=Genbank:WP_010930108.1;Name=WP_010930108.1;gbkey=CDS;product=murein transglycosylase;protein_id=WP_010930108.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2818407 2819318 . - . ID=gene2694;Name=RD04_RS13475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13475;old_locus_tag=RD04_13455 NZ_CP010961.1 Protein Homology CDS 2818407 2819318 . - 0 ID=cds2646;Parent=gene2694;Dbxref=Genbank:WP_014486062.1;Name=WP_014486062.1;gbkey=CDS;product=cysteine synthase B;protein_id=WP_014486062.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2819399 2820301 . - . ID=gene2695;Name=RD04_RS13480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13480;old_locus_tag=RD04_13460 NZ_CP010961.1 GeneMarkS+ CDS 2819399 2820301 . - 0 ID=cds2647;Parent=gene2695;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2820448 2820777 . - . ID=gene2696;Name=RD04_RS13485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13485;old_locus_tag=RD04_13465 NZ_CP010961.1 Protein Homology CDS 2820448 2820777 . - 0 ID=cds2648;Parent=gene2696;Dbxref=Genbank:WP_033462665.1;Name=WP_033462665.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033462665.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2821067 2822056 . - . ID=gene2697;Name=RD04_RS13490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13490;old_locus_tag=RD04_13470 NZ_CP010961.1 Protein Homology CDS 2821067 2822056 . - 0 ID=cds2649;Parent=gene2697;Dbxref=Genbank:WP_003821513.1;Name=WP_003821513.1;gbkey=CDS;product=ADP-L-glycero-D-mannoheptose-6-epimerase;protein_id=WP_003821513.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2822053 2822994 . - . ID=gene2698;Name=RD04_RS13495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13495;old_locus_tag=RD04_13475 NZ_CP010961.1 GeneMarkS+ CDS 2822053 2822994 . - 0 ID=cds2650;Parent=gene2698;Dbxref=Genbank:WP_010930105.1;Name=WP_010930105.1;gbkey=CDS;product=sugar kinase;protein_id=WP_010930105.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2822991 2824211 . - . ID=gene2699;Name=RD04_RS13500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13500;old_locus_tag=RD04_13480 NZ_CP010961.1 Protein Homology CDS 2822991 2824211 . - 0 ID=cds2651;Parent=gene2699;Dbxref=Genbank:WP_010930104.1;Name=WP_010930104.1;gbkey=CDS;product=lipopolysaccharide assembly protein LapB;protein_id=WP_010930104.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2824254 2824568 . - . ID=gene2700;Name=RD04_RS13505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13505;old_locus_tag=RD04_13485 NZ_CP010961.1 Protein Homology CDS 2824254 2824568 . - 0 ID=cds2652;Parent=gene2700;Dbxref=Genbank:WP_010930103.1;Name=WP_010930103.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930103.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2824760 2825119 . - . ID=gene2701;Name=RD04_RS13510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13510;old_locus_tag=RD04_13490 NZ_CP010961.1 Protein Homology CDS 2824760 2825119 . - 0 ID=cds2653;Parent=gene2701;Dbxref=Genbank:WP_010930102.1;Name=WP_010930102.1;gbkey=CDS;product=integration host factor subunit beta;protein_id=WP_010930102.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2825121 2826836 . - . ID=gene2702;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=RD04_RS13515;old_locus_tag=RD04_13495 NZ_CP010961.1 Protein Homology CDS 2825121 2826836 . - 0 ID=cds2654;Parent=gene2702;Dbxref=Genbank:WP_010930101.1;Name=WP_010930101.1;Note=in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins;gbkey=CDS;gene=rpsA;product=30S ribosomal protein S1;protein_id=WP_010930101.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2827024 2827695 . - . ID=gene2703;Name=RD04_RS13520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13520;old_locus_tag=RD04_13500 NZ_CP010961.1 Protein Homology CDS 2827024 2827695 . - 0 ID=cds2655;Parent=gene2703;Dbxref=Genbank:WP_010930100.1;Name=WP_010930100.1;gbkey=CDS;product=cytidylate kinase;protein_id=WP_010930100.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2827710 2829038 . - . ID=gene2704;Name=RD04_RS13525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13525;old_locus_tag=RD04_13505 NZ_CP010961.1 Protein Homology CDS 2827710 2829038 . - 0 ID=cds2656;Parent=gene2704;Dbxref=Genbank:WP_010930099.1;Name=WP_010930099.1;gbkey=CDS;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_010930099.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2829035 2829934 . - . ID=gene2705;Name=RD04_RS13530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13530;old_locus_tag=RD04_13510 NZ_CP010961.1 Protein Homology CDS 2829035 2829934 . - 0 ID=cds2657;Parent=gene2705;Dbxref=Genbank:WP_010930098.1;Name=WP_010930098.1;gbkey=CDS;product=prephenate dehydrogenase;protein_id=WP_010930098.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2830021 2831106 . - . ID=gene2706;Name=RD04_RS13535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13535;old_locus_tag=RD04_13515 NZ_CP010961.1 Protein Homology CDS 2830021 2831106 . - 0 ID=cds2658;Parent=gene2706;Dbxref=Genbank:WP_010930097.1;Name=WP_010930097.1;gbkey=CDS;product=chorismate mutase;protein_id=WP_010930097.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2831099 2832229 . - . ID=gene2707;Name=RD04_RS13540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13540;old_locus_tag=RD04_13520 NZ_CP010961.1 Protein Homology CDS 2831099 2832229 . - 0 ID=cds2659;Parent=gene2707;Dbxref=Genbank:WP_023852687.1;Name=WP_023852687.1;Note=catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B catalyzes 4 phosphohydroxy L-threonine from 2-oxo 3 hydroxy 4- phosphobutanoate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine;gbkey=CDS;product=phosphoserine transaminase;protein_id=WP_023852687.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2832232 2834913 . - . ID=gene2708;Name=RD04_RS13545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13545;old_locus_tag=RD04_13525 NZ_CP010961.1 Protein Homology CDS 2832232 2834913 . - 0 ID=cds2660;Parent=gene2708;Dbxref=Genbank:WP_010930095.1;Name=WP_010930095.1;gbkey=CDS;product=DNA gyrase subunit A;protein_id=WP_010930095.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2835284 2835865 . + . ID=gene2709;Name=RD04_RS13550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13550;old_locus_tag=RD04_13530 NZ_CP010961.1 Protein Homology CDS 2835284 2835865 . + 0 ID=cds2661;Parent=gene2709;Dbxref=Genbank:WP_010930094.1;Name=WP_010930094.1;gbkey=CDS;product=membrane protein;protein_id=WP_010930094.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2835991 2836716 . + . ID=gene2710;Name=RD04_RS13555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13555;old_locus_tag=RD04_13535 NZ_CP010961.1 Protein Homology CDS 2835991 2836716 . + 0 ID=cds2662;Parent=gene2710;Dbxref=Genbank:WP_010930093.1;Name=WP_010930093.1;gbkey=CDS;product=bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase;protein_id=WP_010930093.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2836713 2837390 . + . ID=gene2711;Name=RD04_RS13560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13560;old_locus_tag=RD04_13540 NZ_CP010961.1 Protein Homology CDS 2836713 2837390 . + 0 ID=cds2663;Parent=gene2711;Dbxref=Genbank:WP_010930092.1;Name=WP_010930092.1;gbkey=CDS;product=phosphoglycolate phosphatase%2C bacterial;protein_id=WP_010930092.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2837606 2838787 . + . ID=gene2712;Name=RD04_RS13565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13565;old_locus_tag=RD04_13545 NZ_CP010961.1 Protein Homology CDS 2837606 2838787 . + 0 ID=cds2664;Parent=gene2712;Dbxref=Genbank:WP_010930091.1;Name=WP_010930091.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010930091.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2838830 2839216 . + . ID=gene2713;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=RD04_RS13570 NZ_CP010961.1 cmsearch tmRNA 2838830 2839216 . + . ID=rna48;Parent=gene2713;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;product=transfer-messenger RNA NZ_CP010961.1 cmsearch exon 2838830 2839216 . + . ID=id53;Parent=rna48;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;product=transfer-messenger RNA NZ_CP010961.1 RefSeq gene 2839560 2839742 . + . ID=gene2714;Name=RD04_RS13575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13575;old_locus_tag=RD04_13550 NZ_CP010961.1 Protein Homology CDS 2839560 2839742 . + 0 ID=cds2665;Parent=gene2714;Dbxref=Genbank:WP_010930090.1;Name=WP_010930090.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930090.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2839772 2840674 . - . ID=gene2715;Name=RD04_RS13580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13580;old_locus_tag=RD04_13555 NZ_CP010961.1 GeneMarkS+ CDS 2839772 2840674 . - 0 ID=cds2666;Parent=gene2715;Dbxref=Genbank:WP_039250369.1;Name=WP_039250369.1;gbkey=CDS;product=integrase;protein_id=WP_039250369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2840852 2841244 . + . ID=gene2716;Name=RD04_RS13585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13585;old_locus_tag=RD04_13560 NZ_CP010961.1 Protein Homology CDS 2840852 2841244 . + 0 ID=cds2667;Parent=gene2716;Dbxref=Genbank:WP_004566317.1;Name=WP_004566317.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004566317.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2841521 2842432 . - . ID=gene2717;Name=RD04_RS13590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13590;old_locus_tag=RD04_13565 NZ_CP010961.1 Protein Homology CDS 2841521 2842432 . - 0 ID=cds2668;Parent=gene2717;Dbxref=Genbank:WP_003821497.1;Name=WP_003821497.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003821497.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2842557 2843531 . + . ID=gene2718;Name=RD04_RS13595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13595;old_locus_tag=RD04_13570 NZ_CP010961.1 Protein Homology CDS 2842557 2843531 . + 0 ID=cds2669;Parent=gene2718;Dbxref=Genbank:WP_010930088.1;Name=WP_010930088.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010930088.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2843528 2844478 . - . ID=gene2719;Name=RD04_RS13600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13600;old_locus_tag=RD04_13575 NZ_CP010961.1 Protein Homology CDS 2843528 2844478 . - 0 ID=cds2670;Parent=gene2719;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2844613 2845719 . + . ID=gene2720;Name=RD04_RS13605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13605;old_locus_tag=RD04_13580 NZ_CP010961.1 Protein Homology CDS 2844613 2845719 . + 0 ID=cds2671;Parent=gene2720;Dbxref=Genbank:WP_010931085.1;Name=WP_010931085.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931085.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2845730 2846827 . + . ID=gene2721;Name=RD04_RS13610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13610;old_locus_tag=RD04_13585 NZ_CP010961.1 Protein Homology CDS 2845730 2846827 . + 0 ID=cds2672;Parent=gene2721;Dbxref=Genbank:WP_010931086.1;Name=WP_010931086.1;gbkey=CDS;product=cyclic pyranopterin phosphate synthase MoaA;protein_id=WP_010931086.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2846972 2848177 . - . ID=gene2722;Name=RD04_RS13615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13615;old_locus_tag=RD04_13590 NZ_CP010961.1 Protein Homology CDS 2846972 2848177 . - 0 ID=cds2673;Parent=gene2722;Dbxref=Genbank:WP_010931087.1;Name=WP_010931087.1;gbkey=CDS;product=molybdopterin molybdenumtransferase MoeA;protein_id=WP_010931087.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2848184 2848705 . - . ID=gene2723;Name=RD04_RS13620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13620;old_locus_tag=RD04_13595 NZ_CP010961.1 Protein Homology CDS 2848184 2848705 . - 0 ID=cds2674;Parent=gene2723;Dbxref=Genbank:WP_010931088.1;Name=WP_010931088.1;gbkey=CDS;product=molybdenum cofactor biosynthesis protein;protein_id=WP_010931088.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2848702 2849184 . - . ID=gene2724;Name=RD04_RS13625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13625;old_locus_tag=RD04_13600 NZ_CP010961.1 Protein Homology CDS 2848702 2849184 . - 0 ID=cds2675;Parent=gene2724;Dbxref=Genbank:WP_023853551.1;Name=WP_023853551.1;gbkey=CDS;product=molybdopterin converting factor%2C subunit 2;protein_id=WP_023853551.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2849190 2849441 . - . ID=gene2725;Name=RD04_RS13630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13630;old_locus_tag=RD04_13605 NZ_CP010961.1 Protein Homology CDS 2849190 2849441 . - 0 ID=cds2676;Parent=gene2725;Dbxref=Genbank:WP_003819740.1;Name=WP_003819740.1;gbkey=CDS;product=molybdopterin synthase sulfur carrier subunit;protein_id=WP_003819740.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2849422 2849907 . - . ID=gene2726;Name=RD04_RS13635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13635;old_locus_tag=RD04_13610 NZ_CP010961.1 Protein Homology CDS 2849422 2849907 . - 0 ID=cds2677;Parent=gene2726;Dbxref=Genbank:WP_003819741.1;Name=WP_003819741.1;gbkey=CDS;product=cyclic pyranopterin monophosphate synthase accessory protein;protein_id=WP_003819741.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2850043 2853504 . + . ID=gene2727;Name=RD04_RS13640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13640;old_locus_tag=RD04_13615 NZ_CP010961.1 Protein Homology CDS 2850043 2853504 . + 0 ID=cds2678;Parent=gene2727;Dbxref=Genbank:WP_010931090.1;Name=WP_010931090.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931090.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2853522 2854406 . + . ID=gene2728;Name=RD04_RS13645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13645;old_locus_tag=RD04_13620 NZ_CP010961.1 Protein Homology CDS 2853522 2854406 . + 0 ID=cds2679;Parent=gene2728;Dbxref=Genbank:WP_010931091.1;Name=WP_010931091.1;gbkey=CDS;product=hydrolase;protein_id=WP_010931091.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2854416 2854847 . - . ID=gene2729;Name=RD04_RS13650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13650;old_locus_tag=RD04_13625 NZ_CP010961.1 Protein Homology CDS 2854416 2854847 . - 0 ID=cds2680;Parent=gene2729;Dbxref=Genbank:WP_010931092.1;Name=WP_010931092.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010931092.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2855094 2855597 . + . ID=gene2730;Name=RD04_RS13655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13655;old_locus_tag=RD04_13630 NZ_CP010961.1 Protein Homology CDS 2855094 2855597 . + 0 ID=cds2681;Parent=gene2730;Dbxref=Genbank:WP_003809348.1;Name=WP_003809348.1;gbkey=CDS;product=peroxiredoxin;protein_id=WP_003809348.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2855675 2857075 . + . ID=gene2731;Name=RD04_RS13660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13660;old_locus_tag=RD04_13635 NZ_CP010961.1 Protein Homology CDS 2855675 2857075 . + 0 ID=cds2682;Parent=gene2731;Dbxref=Genbank:WP_010931094.1;Name=WP_010931094.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010931094.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2857150 2858025 . - . ID=gene2732;Name=RD04_RS13665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13665;old_locus_tag=RD04_13640 NZ_CP010961.1 Protein Homology CDS 2857150 2858025 . - 0 ID=cds2683;Parent=gene2732;Dbxref=Genbank:WP_010931095.1;Name=WP_010931095.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931095.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2858022 2859029 . - . ID=gene2733;Name=RD04_RS13670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13670;old_locus_tag=RD04_13645 NZ_CP010961.1 Protein Homology CDS 2858022 2859029 . - 0 ID=cds2684;Parent=gene2733;Dbxref=Genbank:WP_023853546.1;Name=WP_023853546.1;Note=catalyzes the formation of biotin from dethiobiotin;gbkey=CDS;product=biotin synthase;protein_id=WP_023853546.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2859497 2859802 . + . ID=gene2734;Name=RD04_RS13675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13675;old_locus_tag=RD04_13650 NZ_CP010961.1 Protein Homology CDS 2859497 2859802 . + 0 ID=cds2685;Parent=gene2734;Dbxref=Genbank:WP_010931097.1;Name=WP_010931097.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931097.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2859893 2860483 . + . ID=gene2735;Name=RD04_RS13680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13680;old_locus_tag=RD04_13655 NZ_CP010961.1 Protein Homology CDS 2859893 2860483 . + 0 ID=cds2686;Parent=gene2735;Dbxref=Genbank:WP_003819753.1;Name=WP_003819753.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_003819753.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2860674 2861690 . - . ID=gene2736;Name=RD04_RS13685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13685;old_locus_tag=RD04_13660 NZ_CP010961.1 Protein Homology CDS 2860674 2861690 . - 0 ID=cds2687;Parent=gene2736;Dbxref=Genbank:WP_010930320.1;Name=WP_010930320.1;gbkey=CDS;product=transposase;protein_id=WP_010930320.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2861882 2864218 . - . ID=gene2737;Name=RD04_RS13690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13690;old_locus_tag=RD04_13665 NZ_CP010961.1 Protein Homology CDS 2861882 2864218 . - 0 ID=cds2688;Parent=gene2737;Dbxref=Genbank:WP_010931098.1;Name=WP_010931098.1;gbkey=CDS;product=membrane transport ATPase;protein_id=WP_010931098.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2864301 2864735 . + . ID=gene2738;Name=RD04_RS13695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13695;old_locus_tag=RD04_13670 NZ_CP010961.1 Protein Homology CDS 2864301 2864735 . + 0 ID=cds2689;Parent=gene2738;Dbxref=Genbank:WP_003812014.1;Name=WP_003812014.1;gbkey=CDS;product=MerR family transcriptional regulator;protein_id=WP_003812014.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2864834 2865784 . + . ID=gene2739;Name=RD04_RS13700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13700;old_locus_tag=RD04_13675 NZ_CP010961.1 Protein Homology CDS 2864834 2865784 . + 0 ID=cds2690;Parent=gene2739;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2865781 2866575 . - . ID=gene2740;Name=RD04_RS13705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13705;old_locus_tag=RD04_13680 NZ_CP010961.1 Protein Homology CDS 2865781 2866575 . - 0 ID=cds2691;Parent=gene2740;Dbxref=Genbank:WP_010931099.1;Name=WP_010931099.1;gbkey=CDS;product=N-formylglutamate deformylase;protein_id=WP_010931099.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2866607 2867311 . - . ID=gene2741;Name=RD04_RS13710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13710;old_locus_tag=RD04_13685 NZ_CP010961.1 Protein Homology CDS 2866607 2867311 . - 0 ID=cds2692;Parent=gene2741;Dbxref=Genbank:WP_010931100.1;Name=WP_010931100.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010931100.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2867386 2868186 . - . ID=gene2742;Name=RD04_RS13715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13715;old_locus_tag=RD04_13690 NZ_CP010961.1 Protein Homology CDS 2867386 2868186 . - 0 ID=cds2693;Parent=gene2742;Dbxref=Genbank:WP_010931101.1;Name=WP_010931101.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931101.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2868183 2868590 . - . ID=gene2743;Name=RD04_RS13720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13720;old_locus_tag=RD04_13695 NZ_CP010961.1 Protein Homology CDS 2868183 2868590 . - 0 ID=cds2694;Parent=gene2743;Dbxref=Genbank:WP_003809276.1;Name=WP_003809276.1;gbkey=CDS;product=cytochrome o ubiquinol oxidase subunit IV;protein_id=WP_003809276.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2868587 2869228 . - . ID=gene2744;Name=RD04_RS13725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13725;old_locus_tag=RD04_13700 NZ_CP010961.1 Protein Homology CDS 2868587 2869228 . - 0 ID=cds2695;Parent=gene2744;Dbxref=Genbank:WP_003819722.1;Name=WP_003819722.1;gbkey=CDS;product=cytochrome o ubiquinol oxidase subunit III;protein_id=WP_003819722.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2869221 2871221 . - . ID=gene2745;Name=RD04_RS13730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13730;old_locus_tag=RD04_13705 NZ_CP010961.1 Protein Homology CDS 2869221 2871221 . - 0 ID=cds2696;Parent=gene2745;Dbxref=Genbank:WP_010931102.1;Name=WP_010931102.1;gbkey=CDS;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_010931102.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2871279 2872173 . - . ID=gene2746;Name=RD04_RS13735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13735;old_locus_tag=RD04_13710;pseudo=true NZ_CP010961.1 Protein Homology CDS 2871279 2872173 . - 0 ID=cds2697;Parent=gene2746;Note=frameshifted;gbkey=CDS;product=cytochrome ubiquinol oxidase subunit II;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2872482 2873813 . + . ID=gene2747;Name=RD04_RS13740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13740;old_locus_tag=RD04_13715 NZ_CP010961.1 Protein Homology CDS 2872482 2873813 . + 0 ID=cds2698;Parent=gene2747;Dbxref=Genbank:WP_010931103.1;Name=WP_010931103.1;gbkey=CDS;product=arabinose ABC transporter permease;protein_id=WP_010931103.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2873810 2874712 . - . ID=gene2748;Name=RD04_RS13745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13745;old_locus_tag=RD04_13720 NZ_CP010961.1 GeneMarkS+ CDS 2873810 2874712 . - 0 ID=cds2699;Parent=gene2748;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2874859 2876360 . - . ID=gene2749;Name=RD04_RS13750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13750;old_locus_tag=RD04_13725;pseudo=true NZ_CP010961.1 Protein Homology CDS 2874859 2876360 . - 0 ID=cds2700;Parent=gene2749;Note=frameshifted;gbkey=CDS;product=Fis family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2876467 2876733 . - . ID=gene2750;Name=RD04_RS13755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13755;old_locus_tag=RD04_13730 NZ_CP010961.1 Protein Homology CDS 2876467 2876733 . - 0 ID=cds2701;Parent=gene2750;Dbxref=Genbank:WP_010931105.1;Name=WP_010931105.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931105.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2877441 2877779 . + . ID=gene2751;Name=RD04_RS13760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13760;old_locus_tag=RD04_13735 NZ_CP010961.1 Protein Homology CDS 2877441 2877779 . + 0 ID=cds2702;Parent=gene2751;Dbxref=Genbank:WP_003812839.1;Name=WP_003812839.1;Note=indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA;gbkey=CDS;product=nitrogen regulatory protein P-II 1;protein_id=WP_003812839.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2877805 2879045 . + . ID=gene2752;Name=RD04_RS13765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13765;old_locus_tag=RD04_13740;pseudo=true NZ_CP010961.1 Protein Homology CDS 2877805 2879045 . + 0 ID=cds2703;Parent=gene2752;Note=frameshifted;gbkey=CDS;product=ammonia channel protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2879108 2881387 . - . ID=gene2753;Name=RD04_RS13770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13770;old_locus_tag=RD04_13745 NZ_CP010961.1 Protein Homology CDS 2879108 2881387 . - 0 ID=cds2704;Parent=gene2753;Dbxref=Genbank:WP_014486087.1;Name=WP_014486087.1;gbkey=CDS;product=autotransporter;protein_id=WP_014486087.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2881365 2882071 . - . ID=gene2754;Name=RD04_RS13775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13775;old_locus_tag=RD04_13750;pseudo=true NZ_CP010961.1 Protein Homology CDS 2881365 2882071 . - 0 ID=cds2705;Parent=gene2754;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2882334 2882936 . - . ID=gene2755;Name=RD04_RS13780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13780;old_locus_tag=RD04_13755 NZ_CP010961.1 Protein Homology CDS 2882334 2882936 . - 0 ID=cds2706;Parent=gene2755;Dbxref=Genbank:WP_010931107.1;Name=WP_010931107.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_010931107.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2883033 2884322 . + . ID=gene2756;Name=RD04_RS13785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13785;old_locus_tag=RD04_13760 NZ_CP010961.1 Protein Homology CDS 2883033 2884322 . + 0 ID=cds2707;Parent=gene2756;Dbxref=Genbank:WP_010931108.1;Name=WP_010931108.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010931108.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2884380 2885111 . - . ID=gene2757;Name=RD04_RS13790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13790;old_locus_tag=RD04_13765 NZ_CP010961.1 Protein Homology CDS 2884380 2885111 . - 0 ID=cds2708;Parent=gene2757;Dbxref=Genbank:WP_003812846.1;Name=WP_003812846.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003812846.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2885108 2885911 . - . ID=gene2758;Name=RD04_RS13795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13795;old_locus_tag=RD04_13770 NZ_CP010961.1 Protein Homology CDS 2885108 2885911 . - 0 ID=cds2709;Parent=gene2758;Dbxref=Genbank:WP_010931109.1;Name=WP_010931109.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931109.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2885908 2886996 . - . ID=gene2759;Name=RD04_RS13800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13800;old_locus_tag=RD04_13775 NZ_CP010961.1 Protein Homology CDS 2885908 2886996 . - 0 ID=cds2710;Parent=gene2759;Dbxref=Genbank:WP_003812851.1;Name=WP_003812851.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003812851.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2886993 2887922 . - . ID=gene2760;Name=RD04_RS13805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13805;old_locus_tag=RD04_13780 NZ_CP010961.1 Protein Homology CDS 2886993 2887922 . - 0 ID=cds2711;Parent=gene2760;Dbxref=Genbank:WP_003820410.1;Name=WP_003820410.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003820410.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2888071 2889216 . - . ID=gene2761;Name=RD04_RS13810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13810;old_locus_tag=RD04_13785 NZ_CP010961.1 Protein Homology CDS 2888071 2889216 . - 0 ID=cds2712;Parent=gene2761;Dbxref=Genbank:WP_003812857.1;Name=WP_003812857.1;gbkey=CDS;product=branched chain amino acid ABC transporter substrate-binding protein;protein_id=WP_003812857.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2889238 2890140 . - . ID=gene2762;Name=RD04_RS13815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13815;old_locus_tag=RD04_13790 NZ_CP010961.1 GeneMarkS+ CDS 2889238 2890140 . - 0 ID=cds2713;Parent=gene2762;Dbxref=Genbank:WP_041337072.1;Name=WP_041337072.1;gbkey=CDS;product=integrase;protein_id=WP_041337072.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2890519 2894340 . - . ID=gene2763;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=RD04_RS13820;old_locus_tag=RD04_13795 NZ_CP010961.1 Protein Homology CDS 2890519 2894340 . - 0 ID=cds2714;Parent=gene2763;Dbxref=Genbank:WP_024000608.1;Name=WP_024000608.1;Note=proline utilization protein A%3B multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate%3B in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus%3B forms dimers and is a peripherally membrane-associated protein;gbkey=CDS;gene=putA;product=trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase;protein_id=WP_024000608.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2894497 2895165 . - . ID=gene2764;Name=RD04_RS13825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13825;old_locus_tag=RD04_13800 NZ_CP010961.1 Protein Homology CDS 2894497 2895165 . - 0 ID=cds2715;Parent=gene2764;Dbxref=Genbank:WP_010931111.1;Name=WP_010931111.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010931111.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2895170 2896843 . - . ID=gene2765;Name=RD04_RS13830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13830;old_locus_tag=RD04_13805 NZ_CP010961.1 Protein Homology CDS 2895170 2896843 . - 0 ID=cds2716;Parent=gene2765;Dbxref=Genbank:WP_014905522.1;Name=WP_014905522.1;gbkey=CDS;product=paraquat-inducible protein B;protein_id=WP_014905522.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2896862 2898181 . - . ID=gene2766;Name=RD04_RS13835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13835;old_locus_tag=RD04_13810 NZ_CP010961.1 Protein Homology CDS 2896862 2898181 . - 0 ID=cds2717;Parent=gene2766;Dbxref=Genbank:WP_003820402.1;Name=WP_003820402.1;gbkey=CDS;product=exported protein;protein_id=WP_003820402.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2898186 2900501 . - . ID=gene2767;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=RD04_RS13840;old_locus_tag=RD04_13815 NZ_CP010961.1 Protein Homology CDS 2898186 2900501 . - 0 ID=cds2718;Parent=gene2767;Dbxref=Genbank:WP_010931114.1;Name=WP_010931114.1;Note=ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease%3B directs protease to specific substrates;gbkey=CDS;gene=clpA;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_010931114.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2900557 2902725 . - . ID=gene2768;Name=RD04_RS13845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13845;old_locus_tag=RD04_13820 NZ_CP010961.1 Protein Homology CDS 2900557 2902725 . - 0 ID=cds2719;Parent=gene2768;Dbxref=Genbank:WP_010931115.1;Name=WP_010931115.1;gbkey=CDS;product=penicillin-binding protein 1C;protein_id=WP_010931115.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2902722 2907287 . - . ID=gene2769;Name=RD04_RS13850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13850;old_locus_tag=RD04_13825 NZ_CP010961.1 Protein Homology CDS 2902722 2907287 . - 0 ID=cds2720;Parent=gene2769;Dbxref=Genbank:WP_033446291.1;Name=WP_033446291.1;gbkey=CDS;product=alpha-2-macroglobulin;protein_id=WP_033446291.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2908001 2908315 . - . ID=gene2770;Name=RD04_RS13855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13855;old_locus_tag=RD04_13830 NZ_CP010961.1 Protein Homology CDS 2908001 2908315 . - 0 ID=cds2721;Parent=gene2770;Dbxref=Genbank:WP_003820400.1;Name=WP_003820400.1;gbkey=CDS;product=ATP-dependent Clp protease adaptor ClpS;protein_id=WP_003820400.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2908543 2908788 . + . ID=gene2771;Name=RD04_RS13860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13860;old_locus_tag=RD04_13835 NZ_CP010961.1 Protein Homology CDS 2908543 2908788 . + 0 ID=cds2722;Parent=gene2771;Dbxref=Genbank:WP_003812875.1;Name=WP_003812875.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_003812875.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2908910 2909401 . + . ID=gene2772;Name=RD04_RS13865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13865;old_locus_tag=RD04_13840 NZ_CP010961.1 Protein Homology CDS 2908910 2909401 . + 0 ID=cds2723;Parent=gene2772;Dbxref=Genbank:WP_023853338.1;Name=WP_023853338.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853338.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2909501 2910706 . - . ID=gene2773;Name=RD04_RS13870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13870;old_locus_tag=RD04_13845 NZ_CP010961.1 Protein Homology CDS 2909501 2910706 . - 0 ID=cds2724;Parent=gene2773;Dbxref=Genbank:WP_010931117.1;Name=WP_010931117.1;Note=catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA;gbkey=CDS;product=acetyl-CoA acetyltransferase;protein_id=WP_010931117.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2910822 2912219 . - . ID=gene2774;Name=RD04_RS13875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13875;old_locus_tag=RD04_13850 NZ_CP010961.1 Protein Homology CDS 2910822 2912219 . - 0 ID=cds2725;Parent=gene2774;Dbxref=Genbank:WP_019247560.1;Name=WP_019247560.1;gbkey=CDS;product=chemotaxis protein CheW;protein_id=WP_019247560.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2912336 2912914 . - . ID=gene2775;Name=RD04_RS13880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13880;old_locus_tag=RD04_13855 NZ_CP010961.1 Protein Homology CDS 2912336 2912914 . - 0 ID=cds2726;Parent=gene2775;Dbxref=Genbank:WP_010931119.1;Name=WP_010931119.1;Note=SodB%3B iron binding%3B present under aerobic and anaerobic conditions%3B destroys free radicals;gbkey=CDS;product=superoxide dismutase [Fe];protein_id=WP_010931119.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2912987 2914378 . - . ID=gene2776;Name=RD04_RS13885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13885;old_locus_tag=RD04_13860 NZ_CP010961.1 Protein Homology CDS 2912987 2914378 . - 0 ID=cds2727;Parent=gene2776;Dbxref=Genbank:WP_010931120.1;Name=WP_010931120.1;gbkey=CDS;product=exodeoxyribonuclease VII large subunit;protein_id=WP_010931120.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2914546 2915496 . - . ID=gene2777;Name=RD04_RS13890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13890;old_locus_tag=RD04_13865 NZ_CP010961.1 Protein Homology CDS 2914546 2915496 . - 0 ID=cds2728;Parent=gene2777;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2915777 2916397 . + . ID=gene2778;Name=RD04_RS13895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13895;old_locus_tag=RD04_13870 NZ_CP010961.1 Protein Homology CDS 2915777 2916397 . + 0 ID=cds2729;Parent=gene2778;Dbxref=Genbank:WP_003812889.1;Name=WP_003812889.1;gbkey=CDS;product=flagellar motor protein MotA;protein_id=WP_003812889.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2916394 2916807 . + . ID=gene2779;Name=RD04_RS13900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13900;old_locus_tag=RD04_13875 NZ_CP010961.1 Protein Homology CDS 2916394 2916807 . + 0 ID=cds2730;Parent=gene2779;Dbxref=Genbank:WP_010931122.1;Name=WP_010931122.1;gbkey=CDS;product=biopolymer transporter ExbD;protein_id=WP_010931122.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2916804 2917847 . + . ID=gene2780;Name=RD04_RS13905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13905;old_locus_tag=RD04_13880 NZ_CP010961.1 Protein Homology CDS 2916804 2917847 . + 0 ID=cds2731;Parent=gene2780;Dbxref=Genbank:WP_010931123.1;Name=WP_010931123.1;gbkey=CDS;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_010931123.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2917903 2918091 . + . ID=gene2781;Name=RD04_RS13910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13910;old_locus_tag=RD04_13885 NZ_CP010961.1 Protein Homology CDS 2917903 2918091 . + 0 ID=cds2732;Parent=gene2781;Dbxref=Genbank:WP_003812895.1;Name=WP_003812895.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003812895.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2918101 2918865 . + . ID=gene2782;Name=RD04_RS13915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13915;old_locus_tag=RD04_13890 NZ_CP010961.1 Protein Homology CDS 2918101 2918865 . + 0 ID=cds2733;Parent=gene2782;Dbxref=Genbank:WP_010931124.1;Name=WP_010931124.1;gbkey=CDS;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_010931124.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2918956 2919612 . + . ID=gene2783;Name=RD04_RS13920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13920;old_locus_tag=RD04_13895 NZ_CP010961.1 Protein Homology CDS 2918956 2919612 . + 0 ID=cds2734;Parent=gene2783;Dbxref=Genbank:WP_010931125.1;Name=WP_010931125.1;gbkey=CDS;product=adenylate kinase;protein_id=WP_010931125.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2919704 2920462 . + . ID=gene2784;Name=RD04_RS13925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13925;old_locus_tag=RD04_13900 NZ_CP010961.1 Protein Homology CDS 2919704 2920462 . + 0 ID=cds2735;Parent=gene2784;Dbxref=Genbank:WP_010931126.1;Name=WP_010931126.1;gbkey=CDS;product=3-hydroxy-2-methylbutyryl-CoA dehydrogenase;protein_id=WP_010931126.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2920488 2922089 . + . ID=gene2785;Name=RD04_RS13930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13930;old_locus_tag=RD04_13905 NZ_CP010961.1 Protein Homology CDS 2920488 2922089 . + 0 ID=cds2736;Parent=gene2785;Dbxref=Genbank:WP_010931127.1;Name=WP_010931127.1;gbkey=CDS;product=lipid II flippase MurJ;protein_id=WP_010931127.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2922290 2923294 . + . ID=gene2786;Name=RD04_RS13935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13935;old_locus_tag=RD04_13910 NZ_CP010961.1 Protein Homology CDS 2922290 2923294 . + 0 ID=cds2737;Parent=gene2786;Dbxref=Genbank:WP_010931128.1;Name=WP_010931128.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931128.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2923395 2923658 . + . ID=gene2787;Name=RD04_RS13940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13940;old_locus_tag=RD04_13915 NZ_CP010961.1 Protein Homology CDS 2923395 2923658 . + 0 ID=cds2738;Parent=gene2787;Dbxref=Genbank:WP_003812908.1;Name=WP_003812908.1;gbkey=CDS;product=30S ribosomal protein S20;protein_id=WP_003812908.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2923776 2924552 . - . ID=gene2788;Name=RD04_RS13945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13945;old_locus_tag=RD04_13920 NZ_CP010961.1 Protein Homology CDS 2923776 2924552 . - 0 ID=cds2739;Parent=gene2788;Dbxref=Genbank:WP_010931129.1;Name=WP_010931129.1;Note=cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate;gbkey=CDS;product=5-keto-4-deoxy-D-glucarate aldolase;protein_id=WP_010931129.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2924603 2925592 . - . ID=gene2789;Name=RD04_RS13950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13950;old_locus_tag=RD04_13925;pseudo=true NZ_CP010961.1 Protein Homology CDS 2924603 2925592 . - 0 ID=cds2740;Parent=gene2789;Note=internal stop;gbkey=CDS;product=ABC transporter substrate-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2925638 2927379 . - . ID=gene2790;Name=RD04_RS13955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS13955;old_locus_tag=RD04_13930;pseudo=true NZ_CP010961.1 Protein Homology CDS 2925638 2927379 . - 0 ID=cds2741;Parent=gene2790;Note=catalyzes the formation of 3-methyl-2-oxobutanoate from 2%2C3%2C-dihydroxy-3-methylbutanoate%3B frameshifted;gbkey=CDS;product=dihydroxy-acid dehydratase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2927428 2928540 . - . ID=gene2791;Name=RD04_RS13960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13960;old_locus_tag=RD04_13935 NZ_CP010961.1 Protein Homology CDS 2927428 2928540 . - 0 ID=cds2742;Parent=gene2791;Dbxref=Genbank:WP_010931130.1;Name=WP_010931130.1;gbkey=CDS;product=malate dehydrogenase;protein_id=WP_010931130.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2928597 2929499 . - . ID=gene2792;Name=RD04_RS13965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13965;old_locus_tag=RD04_13940 NZ_CP010961.1 GeneMarkS+ CDS 2928597 2929499 . - 0 ID=cds2743;Parent=gene2792;Dbxref=Genbank:WP_039250369.1;Name=WP_039250369.1;gbkey=CDS;product=integrase;protein_id=WP_039250369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2929756 2929977 . - . ID=gene2793;Name=RD04_RS13970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13970;old_locus_tag=RD04_13945 NZ_CP010961.1 Protein Homology CDS 2929756 2929977 . - 0 ID=cds2744;Parent=gene2793;Dbxref=Genbank:WP_003813070.1;Name=WP_003813070.1;gbkey=CDS;product=lipoprotein;protein_id=WP_003813070.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2930191 2931597 . - . ID=gene2794;Name=RD04_RS13975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13975;old_locus_tag=RD04_13950 NZ_CP010961.1 Protein Homology CDS 2930191 2931597 . - 0 ID=cds2745;Parent=gene2794;Dbxref=Genbank:WP_010931131.1;Name=WP_010931131.1;Note=catalyzes the formation of L-threonine from O-phospho-L-homoserine;gbkey=CDS;product=threonine synthase;protein_id=WP_010931131.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2931594 2932898 . - . ID=gene2795;Name=RD04_RS13980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13980;old_locus_tag=RD04_13955 NZ_CP010961.1 Protein Homology CDS 2931594 2932898 . - 0 ID=cds2746;Parent=gene2795;Dbxref=Genbank:WP_003813074.1;Name=WP_003813074.1;Note=catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine;gbkey=CDS;product=homoserine dehydrogenase;protein_id=WP_003813074.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2932895 2934082 . - . ID=gene2796;Name=RD04_RS13985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13985;old_locus_tag=RD04_13960 NZ_CP010961.1 Protein Homology CDS 2932895 2934082 . - 0 ID=cds2747;Parent=gene2796;Dbxref=Genbank:WP_010931132.1;Name=WP_010931132.1;gbkey=CDS;product=aminotransferase;protein_id=WP_010931132.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2934299 2934751 . + . ID=gene2797;Name=RD04_RS13990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13990;old_locus_tag=RD04_13965 NZ_CP010961.1 Protein Homology CDS 2934299 2934751 . + 0 ID=cds2748;Parent=gene2797;Dbxref=Genbank:WP_003813077.1;Name=WP_003813077.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813077.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2934754 2935218 . + . ID=gene2798;Name=RD04_RS13995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS13995;old_locus_tag=RD04_13970 NZ_CP010961.1 Protein Homology CDS 2934754 2935218 . + 0 ID=cds2749;Parent=gene2798;Dbxref=Genbank:WP_003813079.1;Name=WP_003813079.1;gbkey=CDS;product=peroxiredoxin;protein_id=WP_003813079.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2935298 2936976 . + . ID=gene2799;Name=RD04_RS14000;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14000;old_locus_tag=RD04_13975;pseudo=true NZ_CP010961.1 Protein Homology CDS 2935298 2936976 . + 0 ID=cds2750;Parent=gene2799;Note=frameshifted;gbkey=CDS;product=phosphate starvation-inducible protein PhoH;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2937081 2938058 . + . ID=gene2800;Name=RD04_RS14005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14005;old_locus_tag=RD04_13980 NZ_CP010961.1 Protein Homology CDS 2937081 2938058 . + 0 ID=cds2751;Parent=gene2800;Dbxref=Genbank:WP_003813085.1;Name=WP_003813085.1;gbkey=CDS;product=4-hydroxythreonine-4-phosphate dehydrogenase PdxA;protein_id=WP_003813085.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2938138 2939106 . + . ID=gene2801;Name=RD04_RS14010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14010;old_locus_tag=RD04_13985 NZ_CP010961.1 Protein Homology CDS 2938138 2939106 . + 0 ID=cds2752;Parent=gene2801;Dbxref=Genbank:WP_010931134.1;Name=WP_010931134.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931134.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2939127 2940500 . - . ID=gene2802;Name=RD04_RS14015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14015;old_locus_tag=RD04_13990 NZ_CP010961.1 Protein Homology CDS 2939127 2940500 . - 0 ID=cds2753;Parent=gene2802;Dbxref=Genbank:WP_003813089.1;Name=WP_003813089.1;gbkey=CDS;product=replicative DNA helicase;protein_id=WP_003813089.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2940497 2941333 . - . ID=gene2803;Name=RD04_RS14020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14020;old_locus_tag=RD04_13995 NZ_CP010961.1 Protein Homology CDS 2940497 2941333 . - 0 ID=cds2754;Parent=gene2803;Dbxref=Genbank:WP_003813091.1;Name=WP_003813091.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813091.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2941450 2941905 . - . ID=gene2804;Name=RD04_RS14025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14025;old_locus_tag=RD04_14000 NZ_CP010961.1 Protein Homology CDS 2941450 2941905 . - 0 ID=cds2755;Parent=gene2804;Dbxref=Genbank:WP_010931135.1;Name=WP_010931135.1;gbkey=CDS;product=50S ribosomal protein L9;protein_id=WP_010931135.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2941921 2942193 . - . ID=gene2805;Name=RD04_RS14030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14030;old_locus_tag=RD04_14005 NZ_CP010961.1 Protein Homology CDS 2941921 2942193 . - 0 ID=cds2756;Parent=gene2805;Dbxref=Genbank:WP_003813094.1;Name=WP_003813094.1;gbkey=CDS;product=30S ribosomal protein S18;protein_id=WP_003813094.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2942286 2942609 . - . ID=gene2806;Name=RD04_RS14035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14035;old_locus_tag=RD04_14010 NZ_CP010961.1 Protein Homology CDS 2942286 2942609 . - 0 ID=cds2757;Parent=gene2806;Dbxref=Genbank:WP_003813095.1;Name=WP_003813095.1;Note=binds single-stranded DNA at the primosome assembly site;gbkey=CDS;product=primosomal replication protein N;protein_id=WP_003813095.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2942657 2943037 . - . ID=gene2807;Name=RD04_RS14040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14040;old_locus_tag=RD04_14015 NZ_CP010961.1 Protein Homology CDS 2942657 2943037 . - 0 ID=cds2758;Parent=gene2807;Dbxref=Genbank:WP_010926331.1;Name=WP_010926331.1;gbkey=CDS;product=30S ribosomal protein S6;protein_id=WP_010926331.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2943257 2944054 . - . ID=gene2808;Name=RD04_RS14045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14045;old_locus_tag=RD04_14020 NZ_CP010961.1 Protein Homology CDS 2943257 2944054 . - 0 ID=cds2759;Parent=gene2808;Dbxref=Genbank:WP_003813103.1;Name=WP_003813103.1;Note=similar protein in Methanocaldococcus converts GTP to 7%2C8-dihydro-D-neopterin 2'%2C3'-cyclic phosphate as the first step in methanopterin biosynthesis;gbkey=CDS;product=GTP cyclohydrolase FolE2;protein_id=WP_003813103.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2944211 2946073 . - . ID=gene2809;Name=RD04_RS14050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14050;old_locus_tag=RD04_14025 NZ_CP010961.1 Protein Homology CDS 2944211 2946073 . - 0 ID=cds2760;Parent=gene2809;Dbxref=Genbank:WP_010931136.1;Name=WP_010931136.1;Note=catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate;gbkey=CDS;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_010931136.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2946123 2947034 . - . ID=gene2810;Name=RD04_RS14055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14055;old_locus_tag=RD04_14030 NZ_CP010961.1 Protein Homology CDS 2946123 2947034 . - 0 ID=cds2761;Parent=gene2810;Dbxref=Genbank:WP_003820295.1;Name=WP_003820295.1;gbkey=CDS;product=geranyltranstransferase;protein_id=WP_003820295.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2947039 2947305 . - . ID=gene2811;Name=RD04_RS14060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14060;old_locus_tag=RD04_14035 NZ_CP010961.1 Protein Homology CDS 2947039 2947305 . - 0 ID=cds2762;Parent=gene2811;Dbxref=Genbank:WP_003813109.1;Name=WP_003813109.1;gbkey=CDS;product=exodeoxyribonuclease 7 small subunit;protein_id=WP_003813109.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2947392 2948222 . - . ID=gene2812;Name=RD04_RS14065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14065;old_locus_tag=RD04_14040 NZ_CP010961.1 Protein Homology CDS 2947392 2948222 . - 0 ID=cds2763;Parent=gene2812;Dbxref=Genbank:WP_033446289.1;Name=WP_033446289.1;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_033446289.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2948397 2949362 . + . ID=gene2813;Name=RD04_RS14070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14070;old_locus_tag=RD04_14045 NZ_CP010961.1 Protein Homology CDS 2948397 2949362 . + 0 ID=cds2764;Parent=gene2813;Dbxref=Genbank:WP_010931138.1;Name=WP_010931138.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010931138.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2949533 2950543 . + . ID=gene2814;Name=RD04_RS14075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14075;old_locus_tag=RD04_14050 NZ_CP010961.1 Protein Homology CDS 2949533 2950543 . + 0 ID=cds2765;Parent=gene2814;Dbxref=Genbank:WP_003813114.1;Name=WP_003813114.1;gbkey=CDS;product=membrane protein;protein_id=WP_003813114.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2950691 2951842 . + . ID=gene2815;Name=RD04_RS14080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14080;old_locus_tag=RD04_14055 NZ_CP010961.1 Protein Homology CDS 2950691 2951842 . + 0 ID=cds2766;Parent=gene2815;Dbxref=Genbank:WP_010931139.1;Name=WP_010931139.1;gbkey=CDS;product=iron-sulfur protein;protein_id=WP_010931139.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2951839 2952741 . - . ID=gene2816;Name=RD04_RS14085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14085;old_locus_tag=RD04_14060 NZ_CP010961.1 GeneMarkS+ CDS 2951839 2952741 . - 0 ID=cds2767;Parent=gene2816;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2952985 2954457 . - . ID=gene2817;Name=RD04_RS14090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14090;old_locus_tag=RD04_14065 NZ_CP010961.1 Protein Homology CDS 2952985 2954457 . - 0 ID=cds2768;Parent=gene2817;Dbxref=Genbank:WP_003814555.1;Name=WP_003814555.1;gbkey=CDS;product=magnesium transporter;protein_id=WP_003814555.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2954468 2954878 . - . ID=gene2818;Name=RD04_RS14095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14095;old_locus_tag=RD04_14070 NZ_CP010961.1 Protein Homology CDS 2954468 2954878 . - 0 ID=cds2769;Parent=gene2818;Dbxref=Genbank:WP_003814554.1;Name=WP_003814554.1;gbkey=CDS;product=acyl-CoA thioesterase;protein_id=WP_003814554.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2954942 2955988 . - . ID=gene2819;Name=RD04_RS14100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14100;old_locus_tag=RD04_14075 NZ_CP010961.1 Protein Homology CDS 2954942 2955988 . - 0 ID=cds2770;Parent=gene2819;Dbxref=Genbank:WP_010929220.1;Name=WP_010929220.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929220.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2956095 2956973 . + . ID=gene2820;Name=RD04_RS14105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14105;old_locus_tag=RD04_14080 NZ_CP010961.1 Protein Homology CDS 2956095 2956973 . + 0 ID=cds2771;Parent=gene2820;Dbxref=Genbank:WP_003814552.1;Name=WP_003814552.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003814552.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2956987 2958183 . - . ID=gene2821;Name=RD04_RS14110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14110;old_locus_tag=RD04_14085 NZ_CP010961.1 Protein Homology CDS 2956987 2958183 . - 0 ID=cds2772;Parent=gene2821;Dbxref=Genbank:WP_010931140.1;Name=WP_010931140.1;gbkey=CDS;product=hydrolase;protein_id=WP_010931140.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2958245 2959936 . + . ID=gene2822;Name=RD04_RS14115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14115;old_locus_tag=RD04_14090 NZ_CP010961.1 Protein Homology CDS 2958245 2959936 . + 0 ID=cds2773;Parent=gene2822;Dbxref=Genbank:WP_010931141.1;Name=WP_010931141.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;product=long-chain-fatty-acid--CoA ligase;protein_id=WP_010931141.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2959933 2960835 . - . ID=gene2823;Name=RD04_RS14120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14120;old_locus_tag=RD04_14095 NZ_CP010961.1 GeneMarkS+ CDS 2959933 2960835 . - 0 ID=cds2774;Parent=gene2823;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2961004 2961900 . - . ID=gene2824;Name=RD04_RS14125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14125;old_locus_tag=RD04_14100 NZ_CP010961.1 Protein Homology CDS 2961004 2961900 . - 0 ID=cds2775;Parent=gene2824;Dbxref=Genbank:WP_023852715.1;Name=WP_023852715.1;gbkey=CDS;product=inositol monophosphatase;protein_id=WP_023852715.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2962031 2963883 . + . ID=gene2825;Name=RD04_RS14130;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14130;old_locus_tag=RD04_14105;pseudo=true NZ_CP010961.1 Protein Homology CDS 2962031 2963883 . + 0 ID=cds2776;Parent=gene2825;Note=frameshifted;gbkey=CDS;product=FAD-dependent cmnm(5)s(2)U34 oxidoreductase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2964178 2966403 . + . ID=gene2826;Name=RD04_RS14135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14135;old_locus_tag=RD04_14110 NZ_CP010961.1 Protein Homology CDS 2964178 2966403 . + 0 ID=cds2777;Parent=gene2826;Dbxref=Genbank:WP_003814547.1;Name=WP_003814547.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814547.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2966568 2967656 . + . ID=gene2827;Name=RD04_RS14140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14140;old_locus_tag=RD04_14115 NZ_CP010961.1 Protein Homology CDS 2966568 2967656 . + 0 ID=cds2778;Parent=gene2827;Dbxref=Genbank:WP_003814544.1;Name=WP_003814544.1;gbkey=CDS;product=methionine import ATP-binding protein MetN;protein_id=WP_003814544.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2967613 2968266 . + . ID=gene2828;Name=RD04_RS14145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14145;old_locus_tag=RD04_14120 NZ_CP010961.1 Protein Homology CDS 2967613 2968266 . + 0 ID=cds2779;Parent=gene2828;Dbxref=Genbank:WP_019247918.1;Name=WP_019247918.1;Note=part of the MetNIQ methionine uptake system;gbkey=CDS;product=methionine ABC transporter permease;protein_id=WP_019247918.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2968314 2969111 . + . ID=gene2829;Name=RD04_RS14150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14150;old_locus_tag=RD04_14125 NZ_CP010961.1 Protein Homology CDS 2968314 2969111 . + 0 ID=cds2780;Parent=gene2829;Dbxref=Genbank:WP_010931144.1;Name=WP_010931144.1;gbkey=CDS;product=metal ABC transporter substrate-binding protein;protein_id=WP_010931144.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2969241 2969316 . + . ID=gene2830;Name=RD04_RS14155;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS14155;old_locus_tag=RD04_14130 NZ_CP010961.1 tRNAscan-SE tRNA 2969241 2969316 . + . ID=rna49;Parent=gene2830;anticodon=(pos:2969274..2969276);gbkey=tRNA;product=tRNA-Lys NZ_CP010961.1 tRNAscan-SE exon 2969241 2969316 . + . ID=id54;Parent=rna49;anticodon=(pos:2969274..2969276);gbkey=tRNA;product=tRNA-Lys NZ_CP010961.1 RefSeq gene 2969691 2970593 . + . ID=gene2831;Name=RD04_RS14160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14160;old_locus_tag=RD04_14135 NZ_CP010961.1 GeneMarkS+ CDS 2969691 2970593 . + 0 ID=cds2781;Parent=gene2831;Dbxref=Genbank:WP_039250534.1;Name=WP_039250534.1;gbkey=CDS;product=integrase;protein_id=WP_039250534.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2970674 2971822 . + . ID=gene2832;Name=RD04_RS14165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14165;old_locus_tag=RD04_14140 NZ_CP010961.1 Protein Homology CDS 2970674 2971822 . + 0 ID=cds2782;Parent=gene2832;Dbxref=Genbank:WP_023994659.1;Name=WP_023994659.1;gbkey=CDS;product=alcohol dehydrogenase;protein_id=WP_023994659.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2971879 2972829 . - . ID=gene2833;Name=RD04_RS14170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14170;old_locus_tag=RD04_14145 NZ_CP010961.1 Protein Homology CDS 2971879 2972829 . - 0 ID=cds2783;Parent=gene2833;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2972928 2973233 . - . ID=gene2834;Name=RD04_RS14175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14175;old_locus_tag=RD04_14150 NZ_CP010961.1 Protein Homology CDS 2972928 2973233 . - 0 ID=cds2784;Parent=gene2834;Dbxref=Genbank:WP_003814535.1;Name=WP_003814535.1;gbkey=CDS;product=antibiotic biosynthesis monooxygenase;protein_id=WP_003814535.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2973262 2973696 . - . ID=gene2835;Name=RD04_RS14180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14180;old_locus_tag=RD04_14155 NZ_CP010961.1 Protein Homology CDS 2973262 2973696 . - 0 ID=cds2785;Parent=gene2835;Dbxref=Genbank:WP_003820797.1;Name=WP_003820797.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820797.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2973698 2974942 . - . ID=gene2836;Name=RD04_RS14185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14185;old_locus_tag=RD04_14160 NZ_CP010961.1 Protein Homology CDS 2973698 2974942 . - 0 ID=cds2786;Parent=gene2836;Dbxref=Genbank:WP_010931147.1;Name=WP_010931147.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931147.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2974939 2975649 . - . ID=gene2837;Name=RD04_RS14190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14190;old_locus_tag=RD04_14165 NZ_CP010961.1 Protein Homology CDS 2974939 2975649 . - 0 ID=cds2787;Parent=gene2837;Dbxref=Genbank:WP_003820799.1;Name=WP_003820799.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_003820799.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2975664 2976575 . - . ID=gene2838;Name=RD04_RS14195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14195;old_locus_tag=RD04_14170 NZ_CP010961.1 Protein Homology CDS 2975664 2976575 . - 0 ID=cds2788;Parent=gene2838;Dbxref=Genbank:WP_033446288.1;Name=WP_033446288.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446288.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2976938 2977342 . + . ID=gene2839;Name=RD04_RS14200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14200;old_locus_tag=RD04_14175 NZ_CP010961.1 Protein Homology CDS 2976938 2977342 . + 0 ID=cds2789;Parent=gene2839;Dbxref=Genbank:WP_010931149.1;Name=WP_010931149.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931149.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2977339 2977797 . + . ID=gene2840;Name=RD04_RS14205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14205;old_locus_tag=RD04_14180 NZ_CP010961.1 Protein Homology CDS 2977339 2977797 . + 0 ID=cds2790;Parent=gene2840;Dbxref=Genbank:WP_019247890.1;Name=WP_019247890.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247890.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2977804 2978712 . + . ID=gene2841;Name=RD04_RS14210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14210;old_locus_tag=RD04_14185 NZ_CP010961.1 Protein Homology CDS 2977804 2978712 . + 0 ID=cds2791;Parent=gene2841;Dbxref=Genbank:WP_019247891.1;Name=WP_019247891.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247891.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2978709 2979575 . + . ID=gene2842;Name=RD04_RS14215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14215;old_locus_tag=RD04_14190 NZ_CP010961.1 Protein Homology CDS 2978709 2979575 . + 0 ID=cds2792;Parent=gene2842;Dbxref=Genbank:WP_010931150.1;Name=WP_010931150.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931150.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2979562 2980389 . + . ID=gene2843;Name=RD04_RS14220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14220;old_locus_tag=RD04_14195 NZ_CP010961.1 Protein Homology CDS 2979562 2980389 . + 0 ID=cds2793;Parent=gene2843;Dbxref=Genbank:WP_003814524.1;Name=WP_003814524.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_003814524.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2980400 2981527 . + . ID=gene2844;Name=RD04_RS14225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14225;old_locus_tag=RD04_14200 NZ_CP010961.1 Protein Homology CDS 2980400 2981527 . + 0 ID=cds2794;Parent=gene2844;Dbxref=Genbank:WP_003820806.1;Name=WP_003820806.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003820806.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2981532 2982506 . + . ID=gene2845;Name=RD04_RS14230;end_range=2982506,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14230;old_locus_tag=RD04_14205;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2981532 2982506 . + 0 ID=cds2795;Parent=gene2845;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=2982506,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2982605 2983555 . + . ID=gene2846;Name=RD04_RS14235;end_range=2983555,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14235;old_locus_tag=RD04_14210;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 2982605 2983555 . + 0 ID=cds2796;Parent=gene2846;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=2983555,.;gbkey=CDS;partial=true;product=integrase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 2983885 2985147 . + . ID=gene2847;Name=RD04_RS14240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14240;old_locus_tag=RD04_14215 NZ_CP010961.1 Protein Homology CDS 2983885 2985147 . + 0 ID=cds2797;Parent=gene2847;Dbxref=Genbank:WP_010931152.1;Name=WP_010931152.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931152.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2985154 2985906 . + . ID=gene2848;Name=RD04_RS14245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14245;old_locus_tag=RD04_14220 NZ_CP010961.1 Protein Homology CDS 2985154 2985906 . + 0 ID=cds2798;Parent=gene2848;Dbxref=Genbank:WP_010931153.1;Name=WP_010931153.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_010931153.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2985958 2986143 . - . ID=gene2849;Name=RD04_RS14250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14250;old_locus_tag=RD04_14225 NZ_CP010961.1 Protein Homology CDS 2985958 2986143 . - 0 ID=cds2799;Parent=gene2849;Dbxref=Genbank:WP_019248355.1;Name=WP_019248355.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248355.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2986419 2986883 . + . ID=gene2850;Name=RD04_RS14255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14255;old_locus_tag=RD04_14230 NZ_CP010961.1 Protein Homology CDS 2986419 2986883 . + 0 ID=cds2800;Parent=gene2850;Dbxref=Genbank:WP_003820813.1;Name=WP_003820813.1;gbkey=CDS;product=redox-sensitive transcriptional activator SoxR;protein_id=WP_003820813.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2986963 2987574 . + . ID=gene2851;Name=RD04_RS14260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14260;old_locus_tag=RD04_14235 NZ_CP010961.1 Protein Homology CDS 2986963 2987574 . + 0 ID=cds2801;Parent=gene2851;Dbxref=Genbank:WP_023996698.1;Name=WP_023996698.1;gbkey=CDS;product=methyladenine glycosylase;protein_id=WP_023996698.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2987719 2989827 . + . ID=gene2852;Name=RD04_RS14265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14265;old_locus_tag=RD04_14240 NZ_CP010961.1 Protein Homology CDS 2987719 2989827 . + 0 ID=cds2802;Parent=gene2852;Dbxref=Genbank:WP_010931154.1;Name=WP_010931154.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931154.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2989824 2990726 . - . ID=gene2853;Name=RD04_RS14270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14270;old_locus_tag=RD04_14245 NZ_CP010961.1 GeneMarkS+ CDS 2989824 2990726 . - 0 ID=cds2803;Parent=gene2853;Dbxref=Genbank:WP_062826581.1;Name=WP_062826581.1;gbkey=CDS;product=integrase;protein_id=WP_062826581.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2990878 2991498 . - . ID=gene2854;Name=RD04_RS14275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14275;old_locus_tag=RD04_14250 NZ_CP010961.1 Protein Homology CDS 2990878 2991498 . - 0 ID=cds2804;Parent=gene2854;Dbxref=Genbank:WP_010931155.1;Name=WP_010931155.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_010931155.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2991602 2992342 . + . ID=gene2855;Name=RD04_RS14280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14280;old_locus_tag=RD04_14255 NZ_CP010961.1 Protein Homology CDS 2991602 2992342 . + 0 ID=cds2805;Parent=gene2855;Dbxref=Genbank:WP_003820818.1;Name=WP_003820818.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_003820818.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2992459 2992534 . + . ID=gene2856;Name=RD04_RS14285;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS14285;old_locus_tag=RD04_14260 NZ_CP010961.1 tRNAscan-SE tRNA 2992459 2992534 . + . ID=rna50;Parent=gene2856;anticodon=(pos:2992492..2992494);gbkey=tRNA;product=tRNA-Lys NZ_CP010961.1 tRNAscan-SE exon 2992459 2992534 . + . ID=id55;Parent=rna50;anticodon=(pos:2992492..2992494);gbkey=tRNA;product=tRNA-Lys NZ_CP010961.1 RefSeq gene 2993477 2994601 . - . ID=gene2857;Name=RD04_RS14290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14290;old_locus_tag=RD04_14265 NZ_CP010961.1 Protein Homology CDS 2993477 2994601 . - 0 ID=cds2806;Parent=gene2857;Dbxref=Genbank:WP_019248356.1;Name=WP_019248356.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248356.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2994647 2995015 . - . ID=gene2858;Name=RD04_RS14295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14295;old_locus_tag=RD04_14270 NZ_CP010961.1 Protein Homology CDS 2994647 2995015 . - 0 ID=cds2807;Parent=gene2858;Dbxref=Genbank:WP_019247402.1;Name=WP_019247402.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247402.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2995257 2996207 . - . ID=gene2859;Name=RD04_RS14300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14300;old_locus_tag=RD04_14275 NZ_CP010961.1 Protein Homology CDS 2995257 2996207 . - 0 ID=cds2808;Parent=gene2859;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2996307 2997234 . - . ID=gene2860;Name=RD04_RS14305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14305;old_locus_tag=RD04_14280;partial=true;pseudo=true;start_range=.,2996307 NZ_CP010961.1 Protein Homology CDS 2996307 2997234 . - 0 ID=cds2809;Parent=gene2860;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2996307;transl_table=11 NZ_CP010961.1 RefSeq gene 2997243 2997785 . - . ID=gene2861;Name=RD04_RS14310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14310;old_locus_tag=RD04_14285 NZ_CP010961.1 Protein Homology CDS 2997243 2997785 . - 0 ID=cds2810;Parent=gene2861;Dbxref=Genbank:WP_019247492.1;Name=WP_019247492.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247492.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2998219 2999121 . + . ID=gene2862;Name=RD04_RS14315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14315;old_locus_tag=RD04_14290 NZ_CP010961.1 GeneMarkS+ CDS 2998219 2999121 . + 0 ID=cds2811;Parent=gene2862;Dbxref=Genbank:WP_039250534.1;Name=WP_039250534.1;gbkey=CDS;product=integrase;protein_id=WP_039250534.1;transl_table=11 NZ_CP010961.1 RefSeq gene 2999118 3000026 . - . ID=gene2863;Name=RD04_RS14320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14320;old_locus_tag=RD04_14295 NZ_CP010961.1 Protein Homology CDS 2999118 3000026 . - 0 ID=cds2812;Parent=gene2863;Dbxref=Genbank:WP_010931157.1;Name=WP_010931157.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931157.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3000153 3000989 . + . ID=gene2864;Name=RD04_RS14325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14325;old_locus_tag=RD04_14300 NZ_CP010961.1 Protein Homology CDS 3000153 3000989 . + 0 ID=cds2813;Parent=gene2864;Dbxref=Genbank:WP_003815281.1;Name=WP_003815281.1;gbkey=CDS;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_003815281.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3001502 3002611 . + . ID=gene2865;Name=RD04_RS14330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14330;old_locus_tag=RD04_14305 NZ_CP010961.1 Protein Homology CDS 3001502 3002611 . + 0 ID=cds2814;Parent=gene2865;Dbxref=Genbank:WP_010931158.1;Name=WP_010931158.1;gbkey=CDS;product=porin;protein_id=WP_010931158.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3002673 3003575 . - . ID=gene2866;Name=RD04_RS14335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14335;old_locus_tag=RD04_14310 NZ_CP010961.1 GeneMarkS+ CDS 3002673 3003575 . - 0 ID=cds2815;Parent=gene2866;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3003816 3004598 . - . ID=gene2867;Name=RD04_RS14340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14340;old_locus_tag=RD04_14315 NZ_CP010961.1 Protein Homology CDS 3003816 3004598 . - 0 ID=cds2816;Parent=gene2867;Dbxref=Genbank:WP_010931159.1;Name=WP_010931159.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_010931159.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3004612 3005376 . - . ID=gene2868;Name=RD04_RS14345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14345;old_locus_tag=RD04_14320 NZ_CP010961.1 Protein Homology CDS 3004612 3005376 . - 0 ID=cds2817;Parent=gene2868;Dbxref=Genbank:WP_019247888.1;Name=WP_019247888.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_019247888.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3005389 3006735 . - . ID=gene2869;Name=RD04_RS14350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14350;old_locus_tag=RD04_14325 NZ_CP010961.1 Protein Homology CDS 3005389 3006735 . - 0 ID=cds2818;Parent=gene2869;Dbxref=Genbank:WP_010931161.1;Name=WP_010931161.1;gbkey=CDS;product=transporter;protein_id=WP_010931161.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3006761 3007690 . - . ID=gene2870;Name=RD04_RS14355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14355;old_locus_tag=RD04_14330 NZ_CP010961.1 Protein Homology CDS 3006761 3007690 . - 0 ID=cds2819;Parent=gene2870;Dbxref=Genbank:WP_050681005.1;Name=WP_050681005.1;gbkey=CDS;product=acetylxylan esterase;protein_id=WP_050681005.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3007806 3008711 . + . ID=gene2871;Name=RD04_RS14360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14360;old_locus_tag=RD04_14335 NZ_CP010961.1 Protein Homology CDS 3007806 3008711 . + 0 ID=cds2820;Parent=gene2871;Dbxref=Genbank:WP_003819549.1;Name=WP_003819549.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003819549.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3008729 3009928 . - . ID=gene2872;Name=RD04_RS14365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14365;old_locus_tag=RD04_14340 NZ_CP010961.1 Protein Homology CDS 3008729 3009928 . - 0 ID=cds2821;Parent=gene2872;Dbxref=Genbank:WP_010931163.1;Name=WP_010931163.1;Note=catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate;gbkey=CDS;product=aromatic amino acid aminotransferase;protein_id=WP_010931163.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3010001 3010693 . - . ID=gene2873;Name=RD04_RS14370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14370;old_locus_tag=RD04_14345 NZ_CP010961.1 Protein Homology CDS 3010001 3010693 . - 0 ID=cds2822;Parent=gene2873;Dbxref=Genbank:WP_010931164.1;Name=WP_010931164.1;gbkey=CDS;product=hydrolase;protein_id=WP_010931164.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3010742 3013168 . - . ID=gene2874;Name=RD04_RS14375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14375;old_locus_tag=RD04_14350 NZ_CP010961.1 Protein Homology CDS 3010742 3013168 . - 0 ID=cds2823;Parent=gene2874;Dbxref=Genbank:WP_010931165.1;Name=WP_010931165.1;gbkey=CDS;product=ATPase;protein_id=WP_010931165.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3013213 3014115 . - . ID=gene2875;Name=RD04_RS14380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14380;old_locus_tag=RD04_14355 NZ_CP010961.1 GeneMarkS+ CDS 3013213 3014115 . - 0 ID=cds2824;Parent=gene2875;Dbxref=Genbank:WP_047122779.1;Name=WP_047122779.1;gbkey=CDS;product=integrase;protein_id=WP_047122779.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3014380 3014748 . - . ID=gene2876;Name=RD04_RS14385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14385;old_locus_tag=RD04_14360 NZ_CP010961.1 Protein Homology CDS 3014380 3014748 . - 0 ID=cds2825;Parent=gene2876;Dbxref=Genbank:WP_003809026.1;Name=WP_003809026.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003809026.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3015035 3015961 . + . ID=gene2877;Name=RD04_RS14390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14390;old_locus_tag=RD04_14365 NZ_CP010961.1 Protein Homology CDS 3015035 3015961 . + 0 ID=cds2826;Parent=gene2877;Dbxref=Genbank:WP_003809025.1;Name=WP_003809025.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003809025.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3016005 3017015 . + . ID=gene2878;Name=RD04_RS14395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14395;old_locus_tag=RD04_14370 NZ_CP010961.1 Protein Homology CDS 3016005 3017015 . + 0 ID=cds2827;Parent=gene2878;Dbxref=Genbank:WP_010931167.1;Name=WP_010931167.1;gbkey=CDS;product=alcohol dehydrogenase;protein_id=WP_010931167.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3017012 3017446 . + . ID=gene2879;Name=RD04_RS14400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14400;old_locus_tag=RD04_14375 NZ_CP010961.1 Protein Homology CDS 3017012 3017446 . + 0 ID=cds2828;Parent=gene2879;Dbxref=Genbank:WP_010931168.1;Name=WP_010931168.1;gbkey=CDS;product=thioesterase;protein_id=WP_010931168.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3017483 3018560 . + . ID=gene2880;Name=RD04_RS14405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14405;old_locus_tag=RD04_14380;pseudo=true NZ_CP010961.1 Protein Homology CDS 3017483 3018560 . + 0 ID=cds2829;Parent=gene2880;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3018572 3019360 . + . ID=gene2881;Name=RD04_RS14410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14410;old_locus_tag=RD04_14385 NZ_CP010961.1 Protein Homology CDS 3018572 3019360 . + 0 ID=cds2830;Parent=gene2881;Dbxref=Genbank:WP_010931169.1;Name=WP_010931169.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931169.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3019370 3020152 . + . ID=gene2882;Name=RD04_RS14415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14415;old_locus_tag=RD04_14390 NZ_CP010961.1 Protein Homology CDS 3019370 3020152 . + 0 ID=cds2831;Parent=gene2882;Dbxref=Genbank:WP_010931170.1;Name=WP_010931170.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931170.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3020156 3021247 . - . ID=gene2883;Name=RD04_RS14420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14420;old_locus_tag=RD04_14395 NZ_CP010961.1 Protein Homology CDS 3020156 3021247 . - 0 ID=cds2832;Parent=gene2883;Dbxref=Genbank:WP_010931171.1;Name=WP_010931171.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931171.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3021353 3022828 . + . ID=gene2884;Name=RD04_RS14425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14425;old_locus_tag=RD04_14400 NZ_CP010961.1 Protein Homology CDS 3021353 3022828 . + 0 ID=cds2833;Parent=gene2884;Dbxref=Genbank:WP_010931172.1;Name=WP_010931172.1;gbkey=CDS;product=acid--CoA ligase;protein_id=WP_010931172.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3022970 3023518 . + . ID=gene2885;Name=RD04_RS14430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14430;old_locus_tag=RD04_14405 NZ_CP010961.1 Protein Homology CDS 3022970 3023518 . + 0 ID=cds2834;Parent=gene2885;Dbxref=Genbank:WP_010931173.1;Name=WP_010931173.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931173.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3023534 3023995 . - . ID=gene2886;Name=RD04_RS14435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14435;old_locus_tag=RD04_14410 NZ_CP010961.1 Protein Homology CDS 3023534 3023995 . - 0 ID=cds2835;Parent=gene2886;Dbxref=Genbank:WP_003809010.1;Name=WP_003809010.1;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_003809010.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3024096 3025085 . - . ID=gene2887;Name=RD04_RS14440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14440;old_locus_tag=RD04_14415 NZ_CP010961.1 Protein Homology CDS 3024096 3025085 . - 0 ID=cds2836;Parent=gene2887;Dbxref=Genbank:WP_010931174.1;Name=WP_010931174.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010931174.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3025384 3026085 . + . ID=gene2888;Name=RD04_RS14445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14445;old_locus_tag=RD04_14420 NZ_CP010961.1 Protein Homology CDS 3025384 3026085 . + 0 ID=cds2837;Parent=gene2888;Dbxref=Genbank:WP_010931175.1;Name=WP_010931175.1;gbkey=CDS;product=riboflavin synthase subunit alpha;protein_id=WP_010931175.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3026124 3027497 . - . ID=gene2889;Name=RD04_RS14450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14450;old_locus_tag=RD04_14425 NZ_CP010961.1 Protein Homology CDS 3026124 3027497 . - 0 ID=cds2838;Parent=gene2889;Dbxref=Genbank:WP_010931176.1;Name=WP_010931176.1;gbkey=CDS;product=amidase;protein_id=WP_010931176.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3027872 3028822 . - . ID=gene2890;Name=RD04_RS14455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14455;old_locus_tag=RD04_14430;partial=true;pseudo=true;start_range=.,3027872 NZ_CP010961.1 Protein Homology CDS 3027872 3028822 . - 0 ID=cds2839;Parent=gene2890;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=integrase;pseudo=true;start_range=.,3027872;transl_table=11 NZ_CP010961.1 RefSeq gene 3028822 3029556 . - . ID=gene2891;Name=RD04_RS14460;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14460;old_locus_tag=RD04_14435;partial=true;pseudo=true;start_range=.,3028822 NZ_CP010961.1 Protein Homology CDS 3028822 3029556 . - 0 ID=cds2840;Parent=gene2891;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3028822;transl_table=11 NZ_CP010961.1 RefSeq gene 3029709 3030611 . + . ID=gene2892;Name=RD04_RS14465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14465;old_locus_tag=RD04_14440 NZ_CP010961.1 Protein Homology CDS 3029709 3030611 . + 0 ID=cds2841;Parent=gene2892;Dbxref=Genbank:WP_010931177.1;Name=WP_010931177.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931177.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3030559 3031779 . - . ID=gene2893;Name=RD04_RS14470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14470;old_locus_tag=RD04_14445 NZ_CP010961.1 Protein Homology CDS 3030559 3031779 . - 0 ID=cds2842;Parent=gene2893;Dbxref=Genbank:WP_010931178.1;Name=WP_010931178.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010931178.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3031776 3032285 . - . ID=gene2894;Name=RD04_RS14475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14475;old_locus_tag=RD04_14450 NZ_CP010961.1 Protein Homology CDS 3031776 3032285 . - 0 ID=cds2843;Parent=gene2894;Dbxref=Genbank:WP_010931179.1;Name=WP_010931179.1;gbkey=CDS;product=tRNA-specific adenosine deaminase;protein_id=WP_010931179.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3032275 3032970 . - . ID=gene2895;Name=RD04_RS14480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14480;old_locus_tag=RD04_14455 NZ_CP010961.1 Protein Homology CDS 3032275 3032970 . - 0 ID=cds2844;Parent=gene2895;Dbxref=Genbank:WP_010926062.1;Name=WP_010926062.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010926062.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3033041 3033910 . + . ID=gene2896;Name=RD04_RS14485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14485;old_locus_tag=RD04_14460 NZ_CP010961.1 Protein Homology CDS 3033041 3033910 . + 0 ID=cds2845;Parent=gene2896;Dbxref=Genbank:WP_010931181.1;Name=WP_010931181.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931181.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3033921 3034196 . - . ID=gene2897;Name=RD04_RS14490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14490;old_locus_tag=RD04_14465 NZ_CP010961.1 GeneMarkS+ CDS 3033921 3034196 . - 0 ID=cds2846;Parent=gene2897;Dbxref=Genbank:WP_019249459.1;Name=WP_019249459.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019249459.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3034260 3035210 . + . ID=gene2898;Name=RD04_RS14495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14495;old_locus_tag=RD04_14470 NZ_CP010961.1 Protein Homology CDS 3034260 3035210 . + 0 ID=cds2847;Parent=gene2898;Dbxref=Genbank:WP_010930208.1;Name=WP_010930208.1;gbkey=CDS;product=transposase;protein_id=WP_010930208.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3035207 3036052 . - . ID=gene2899;Name=RD04_RS14500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14500;old_locus_tag=RD04_14475;partial=true;pseudo=true;start_range=.,3035207 NZ_CP010961.1 Protein Homology CDS 3035207 3036052 . - 0 ID=cds2848;Parent=gene2899;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=NADH:flavin oxidoreductase;pseudo=true;start_range=.,3035207;transl_table=11 NZ_CP010961.1 RefSeq gene 3036071 3036769 . - . ID=gene2900;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=RD04_RS14505;old_locus_tag=RD04_14480 NZ_CP010961.1 Protein Homology CDS 3036071 3036769 . - 0 ID=cds2849;Parent=gene2900;Dbxref=Genbank:WP_023995104.1;Name=WP_023995104.1;Note=with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livF;product=ABC transporter ATP-binding protein;protein_id=WP_023995104.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3036753 3037540 . - . ID=gene2901;Name=RD04_RS14510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14510;old_locus_tag=RD04_14485;pseudo=true NZ_CP010961.1 Protein Homology CDS 3036753 3037540 . - 0 ID=cds2850;Parent=gene2901;Note=frameshifted;gbkey=CDS;product=ABC transporter ATP-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3037537 3038499 . - . ID=gene2902;Name=RD04_RS14515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14515;old_locus_tag=RD04_14490 NZ_CP010961.1 Protein Homology CDS 3037537 3038499 . - 0 ID=cds2851;Parent=gene2902;Dbxref=Genbank:WP_003818691.1;Name=WP_003818691.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_003818691.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3038503 3039363 . - . ID=gene2903;Name=RD04_RS14520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14520;old_locus_tag=RD04_14495 NZ_CP010961.1 Protein Homology CDS 3038503 3039363 . - 0 ID=cds2852;Parent=gene2903;Dbxref=Genbank:WP_024000675.1;Name=WP_024000675.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_024000675.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3039357 3039749 . - . ID=gene2904;Name=RD04_RS14525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14525;old_locus_tag=RD04_14500 NZ_CP010961.1 Protein Homology CDS 3039357 3039749 . - 0 ID=cds2853;Parent=gene2904;Dbxref=Genbank:WP_003808978.1;Name=WP_003808978.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003808978.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3039780 3040835 . - . ID=gene2905;Name=RD04_RS14530;end_range=3040835,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14530;old_locus_tag=RD04_14505;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3039780 3040835 . - 0 ID=cds2854;Parent=gene2905;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=3040835,.;gbkey=CDS;partial=true;product=acetyl-CoA synthetase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3040949 3042150 . - . ID=gene2906;Name=RD04_RS14535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14535;old_locus_tag=RD04_14510;pseudo=true NZ_CP010961.1 Protein Homology CDS 3040949 3042150 . - 0 ID=cds2855;Parent=gene2906;Note=frameshifted;gbkey=CDS;product=ABC transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3042404 3043201 . + . ID=gene2907;Name=RD04_RS14540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14540;old_locus_tag=RD04_14515 NZ_CP010961.1 Protein Homology CDS 3042404 3043201 . + 0 ID=cds2856;Parent=gene2907;Dbxref=Genbank:WP_014486094.1;Name=WP_014486094.1;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_014486094.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3043235 3044014 . - . ID=gene2908;Name=RD04_RS14545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14545;old_locus_tag=RD04_14520 NZ_CP010961.1 Protein Homology CDS 3043235 3044014 . - 0 ID=cds2857;Parent=gene2908;Dbxref=Genbank:WP_014486095.1;Name=WP_014486095.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_014486095.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3044043 3044915 . - . ID=gene2909;Name=RD04_RS14550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14550;old_locus_tag=RD04_14525 NZ_CP010961.1 Protein Homology CDS 3044043 3044915 . - 0 ID=cds2858;Parent=gene2909;Dbxref=Genbank:WP_014486096.1;Name=WP_014486096.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014486096.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3044937 3045686 . - . ID=gene2910;Name=RD04_RS14555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14555;old_locus_tag=RD04_14530 NZ_CP010961.1 Protein Homology CDS 3044937 3045686 . - 0 ID=cds2859;Parent=gene2910;Dbxref=Genbank:WP_003818698.1;Name=WP_003818698.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003818698.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3045694 3046551 . - . ID=gene2911;Name=RD04_RS14560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14560;old_locus_tag=RD04_14535 NZ_CP010961.1 Protein Homology CDS 3045694 3046551 . - 0 ID=cds2860;Parent=gene2911;Dbxref=Genbank:WP_014486097.1;Name=WP_014486097.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_014486097.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3046592 3047155 . - . ID=gene2912;Name=RD04_RS14565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14565;old_locus_tag=RD04_14540 NZ_CP010961.1 Protein Homology CDS 3046592 3047155 . - 0 ID=cds2861;Parent=gene2912;Dbxref=Genbank:WP_019247597.1;Name=WP_019247597.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247597.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3047186 3047482 . - . ID=gene2913;Name=RD04_RS14570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14570;old_locus_tag=RD04_14545 NZ_CP010961.1 Protein Homology CDS 3047186 3047482 . - 0 ID=cds2862;Parent=gene2913;Dbxref=Genbank:WP_019247598.1;Name=WP_019247598.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247598.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3047563 3048366 . - . ID=gene2914;Name=RD04_RS14575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14575;old_locus_tag=RD04_14550 NZ_CP010961.1 Protein Homology CDS 3047563 3048366 . - 0 ID=cds2863;Parent=gene2914;Dbxref=Genbank:WP_014486098.1;Name=WP_014486098.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_014486098.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3048387 3049583 . - . ID=gene2915;Name=RD04_RS14580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14580;old_locus_tag=RD04_14555 NZ_CP010961.1 Protein Homology CDS 3048387 3049583 . - 0 ID=cds2864;Parent=gene2915;Dbxref=Genbank:WP_003818702.1;Name=WP_003818702.1;gbkey=CDS;product=CoA transferase;protein_id=WP_003818702.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3049586 3050587 . - . ID=gene2916;Name=RD04_RS14585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14585;old_locus_tag=RD04_14560 NZ_CP010961.1 Protein Homology CDS 3049586 3050587 . - 0 ID=cds2865;Parent=gene2916;Dbxref=Genbank:WP_019247599.1;Name=WP_019247599.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247599.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3050692 3051102 . + . ID=gene2917;Name=RD04_RS14590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14590;old_locus_tag=RD04_14565 NZ_CP010961.1 Protein Homology CDS 3050692 3051102 . + 0 ID=cds2866;Parent=gene2917;Dbxref=Genbank:WP_019248131.1;Name=WP_019248131.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248131.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3051205 3051867 . + . ID=gene2918;Name=RD04_RS14595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14595;old_locus_tag=RD04_14570 NZ_CP010961.1 Protein Homology CDS 3051205 3051867 . + 0 ID=cds2867;Parent=gene2918;Dbxref=Genbank:WP_014486100.1;Name=WP_014486100.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_014486100.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3052018 3052920 . + . ID=gene2919;Name=RD04_RS14600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14600;old_locus_tag=RD04_14575 NZ_CP010961.1 GeneMarkS+ CDS 3052018 3052920 . + 0 ID=cds2868;Parent=gene2919;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3052917 3053993 . - . ID=gene2920;Name=RD04_RS14605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14605;old_locus_tag=RD04_14580 NZ_CP010961.1 Protein Homology CDS 3052917 3053993 . - 0 ID=cds2869;Parent=gene2920;Dbxref=Genbank:WP_003813006.1;Name=WP_003813006.1;gbkey=CDS;product=AI-2E family transporter;protein_id=WP_003813006.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3054038 3054790 . - . ID=gene2921;Name=RD04_RS14610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14610;old_locus_tag=RD04_14585 NZ_CP010961.1 Protein Homology CDS 3054038 3054790 . - 0 ID=cds2870;Parent=gene2921;Dbxref=Genbank:WP_010931182.1;Name=WP_010931182.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010931182.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3055353 3055634 . + . ID=gene2922;Name=RD04_RS14615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14615;old_locus_tag=RD04_14590 NZ_CP010961.1 Protein Homology CDS 3055353 3055634 . + 0 ID=cds2871;Parent=gene2922;Dbxref=Genbank:WP_003813010.1;Name=WP_003813010.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003813010.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3055696 3056391 . + . ID=gene2923;Name=RD04_RS14620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14620;old_locus_tag=RD04_14595 NZ_CP010961.1 Protein Homology CDS 3055696 3056391 . + 0 ID=cds2872;Parent=gene2923;Dbxref=Genbank:WP_003813013.1;Name=WP_003813013.1;gbkey=CDS;product=cytochrome b561;protein_id=WP_003813013.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3056476 3056934 . - . ID=gene2924;Name=RD04_RS14625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14625;old_locus_tag=RD04_14600 NZ_CP010961.1 Protein Homology CDS 3056476 3056934 . - 0 ID=cds2873;Parent=gene2924;Dbxref=Genbank:WP_003813017.1;Name=WP_003813017.1;gbkey=CDS;product=cytochrome c;protein_id=WP_003813017.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3056997 3058373 . - . ID=gene2925;Name=RD04_RS14630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14630;old_locus_tag=RD04_14605 NZ_CP010961.1 Protein Homology CDS 3056997 3058373 . - 0 ID=cds2874;Parent=gene2925;Dbxref=Genbank:WP_010931184.1;Name=WP_010931184.1;Note=Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide;gbkey=CDS;product=adenylosuccinate lyase;protein_id=WP_010931184.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3058533 3059144 . + . ID=gene2926;Name=RD04_RS14635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14635;old_locus_tag=RD04_14610 NZ_CP010961.1 Protein Homology CDS 3058533 3059144 . + 0 ID=cds2875;Parent=gene2926;Dbxref=Genbank:WP_010931185.1;Name=WP_010931185.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_010931185.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3059242 3060060 . - . ID=gene2927;Name=RD04_RS14640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14640;old_locus_tag=RD04_14615 NZ_CP010961.1 Protein Homology CDS 3059242 3060060 . - 0 ID=cds2876;Parent=gene2927;Dbxref=Genbank:WP_003813022.1;Name=WP_003813022.1;gbkey=CDS;product=membrane protein;protein_id=WP_003813022.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3060161 3061276 . - . ID=gene2928;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;locus_tag=RD04_RS14645;old_locus_tag=RD04_14620 NZ_CP010961.1 Protein Homology CDS 3060161 3061276 . - 0 ID=cds2877;Parent=gene2928;Dbxref=Genbank:WP_003813026.1;Name=WP_003813026.1;Note=catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs;gbkey=CDS;gene=mnmA;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_003813026.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3061289 3062209 . - . ID=gene2929;Name=RD04_RS14650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14650;old_locus_tag=RD04_14625 NZ_CP010961.1 Protein Homology CDS 3061289 3062209 . - 0 ID=cds2878;Parent=gene2929;Dbxref=Genbank:WP_010931186.1;Name=WP_010931186.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931186.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3062380 3063366 . + . ID=gene2930;Name=RD04_RS14655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14655;old_locus_tag=RD04_14630 NZ_CP010961.1 Protein Homology CDS 3062380 3063366 . + 0 ID=cds2879;Parent=gene2930;Dbxref=Genbank:WP_010931187.1;Name=WP_010931187.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931187.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3063427 3064302 . + . ID=gene2931;Name=RD04_RS14660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14660;old_locus_tag=RD04_14635 NZ_CP010961.1 Protein Homology CDS 3063427 3064302 . + 0 ID=cds2880;Parent=gene2931;Dbxref=Genbank:WP_010931188.1;Name=WP_010931188.1;gbkey=CDS;product=hydrolase;protein_id=WP_010931188.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3064557 3065675 . + . ID=gene2932;Name=RD04_RS14665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14665;old_locus_tag=RD04_14640 NZ_CP010961.1 Protein Homology CDS 3064557 3065675 . + 0 ID=cds2881;Parent=gene2932;Dbxref=Genbank:WP_010931189.1;Name=WP_010931189.1;gbkey=CDS;product=NAD(P) transhydrogenase subunit alpha;protein_id=WP_010931189.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3065992 3067428 . + . ID=gene2933;Name=RD04_RS14670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14670;old_locus_tag=RD04_14645 NZ_CP010961.1 Protein Homology CDS 3065992 3067428 . + 0 ID=cds2882;Parent=gene2933;Dbxref=Genbank:WP_003813039.1;Name=WP_003813039.1;gbkey=CDS;product=NAD(P) transhydrogenase subunit beta;protein_id=WP_003813039.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3067472 3068482 . - . ID=gene2934;Name=RD04_RS14675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14675;old_locus_tag=RD04_14650 NZ_CP010961.1 Protein Homology CDS 3067472 3068482 . - 0 ID=cds2883;Parent=gene2934;Dbxref=Genbank:WP_033446272.1;Name=WP_033446272.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_033446272.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3068658 3070871 . + . ID=gene2935;Name=RD04_RS14680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14680;old_locus_tag=RD04_14655 NZ_CP010961.1 Protein Homology CDS 3068658 3070871 . + 0 ID=cds2884;Parent=gene2935;Dbxref=Genbank:WP_010931191.1;Name=WP_010931191.1;Note=Fep%3B Cbt%3B Cbr%3B FeuB%3B FepA%3B PfeA%3B IroN%3B BfeA%3B outer membrane receptor of ferric enterobactin and colicins B and D%3B interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space;gbkey=CDS;product=outer membrane receptor FepA;protein_id=WP_010931191.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3070874 3071785 . + . ID=gene2936;Name=RD04_RS14685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14685;old_locus_tag=RD04_14660 NZ_CP010961.1 Protein Homology CDS 3070874 3071785 . + 0 ID=cds2885;Parent=gene2936;Dbxref=Genbank:WP_010931192.1;Name=WP_010931192.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931192.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3071776 3073005 . - . ID=gene2937;Name=glcF;gbkey=Gene;gene=glcF;gene_biotype=protein_coding;locus_tag=RD04_RS14690;old_locus_tag=RD04_14665 NZ_CP010961.1 Protein Homology CDS 3071776 3073005 . - 0 ID=cds2886;Parent=gene2937;Dbxref=Genbank:WP_003813047.1;Name=WP_003813047.1;gbkey=CDS;gene=glcF;product=glycolate oxidase iron-sulfur subunit;protein_id=WP_003813047.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3073038 3074147 . - . ID=gene2938;Name=glcE;gbkey=Gene;gene=glcE;gene_biotype=protein_coding;locus_tag=RD04_RS14695;old_locus_tag=RD04_14670 NZ_CP010961.1 Protein Homology CDS 3073038 3074147 . - 0 ID=cds2887;Parent=gene2938;Dbxref=Genbank:WP_003813049.1;Name=WP_003813049.1;gbkey=CDS;gene=glcE;product=glycolate oxidase subunit GlcE;protein_id=WP_003813049.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3074159 3075658 . - . ID=gene2939;Name=RD04_RS14700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14700;old_locus_tag=RD04_14675 NZ_CP010961.1 Protein Homology CDS 3074159 3075658 . - 0 ID=cds2888;Parent=gene2939;Dbxref=Genbank:WP_010931193.1;Name=WP_010931193.1;gbkey=CDS;product=FAD-binding protein;protein_id=WP_010931193.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3075793 3077202 . - . ID=gene2940;Name=RD04_RS14705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14705;old_locus_tag=RD04_14680 NZ_CP010961.1 Protein Homology CDS 3075793 3077202 . - 0 ID=cds2889;Parent=gene2940;Dbxref=Genbank:WP_010931194.1;Name=WP_010931194.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010931194.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3077332 3089985 . + . ID=gene2941;Name=RD04_RS14710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14710;old_locus_tag=RD04_14685 NZ_CP010961.1 Protein Homology CDS 3077332 3089985 . + 0 ID=cds2890;Parent=gene2941;Dbxref=Genbank:WP_023853656.1;Name=WP_023853656.1;gbkey=CDS;product=filamentous hemagglutinin;protein_id=WP_023853656.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3090007 3091080 . - . ID=gene2942;Name=RD04_RS14715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14715;old_locus_tag=RD04_14690 NZ_CP010961.1 Protein Homology CDS 3090007 3091080 . - 0 ID=cds2891;Parent=gene2942;Dbxref=Genbank:WP_003813056.1;Name=WP_003813056.1;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=WP_003813056.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3091337 3092797 . - . ID=gene2943;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=RD04_RS14720;old_locus_tag=RD04_14695 NZ_CP010961.1 Protein Homology CDS 3091337 3092797 . - 0 ID=cds2892;Parent=gene2943;Dbxref=Genbank:WP_010931196.1;Name=WP_010931196.1;Note=responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17%2C an exported protein that targets the essential topoisomerase II DNA gyrase%3B degrades the E. coli plasmid F-encoded CcdA;gbkey=CDS;gene=tldD;product=peptidase C69;protein_id=WP_010931196.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3092808 3093638 . - . ID=gene2944;Name=RD04_RS14725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14725;old_locus_tag=RD04_14700 NZ_CP010961.1 Protein Homology CDS 3092808 3093638 . - 0 ID=cds2893;Parent=gene2944;Dbxref=Genbank:WP_010931197.1;Name=WP_010931197.1;gbkey=CDS;product=hydrolase;protein_id=WP_010931197.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3093763 3094134 . + . ID=gene2945;Name=RD04_RS14730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14730;old_locus_tag=RD04_14705 NZ_CP010961.1 Protein Homology CDS 3093763 3094134 . + 0 ID=cds2894;Parent=gene2945;Dbxref=Genbank:WP_010931198.1;Name=WP_010931198.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_010931198.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3094233 3095183 . - . ID=gene2946;Name=RD04_RS14735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14735;old_locus_tag=RD04_14710 NZ_CP010961.1 Protein Homology CDS 3094233 3095183 . - 0 ID=cds2895;Parent=gene2946;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3095282 3096085 . - . ID=gene2947;Name=RD04_RS14740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14740;old_locus_tag=RD04_14715 NZ_CP010961.1 Protein Homology CDS 3095282 3096085 . - 0 ID=cds2896;Parent=gene2947;Dbxref=Genbank:WP_003809257.1;Name=WP_003809257.1;gbkey=CDS;product=membrane protein;protein_id=WP_003809257.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3096082 3096609 . - . ID=gene2948;Name=RD04_RS14745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14745;old_locus_tag=RD04_14720 NZ_CP010961.1 Protein Homology CDS 3096082 3096609 . - 0 ID=cds2897;Parent=gene2948;Dbxref=Genbank:WP_004568255.1;Name=WP_004568255.1;gbkey=CDS;product=RNA polymerase sigma factor;protein_id=WP_004568255.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3096660 3097028 . - . ID=gene2949;Name=RD04_RS14750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14750;old_locus_tag=RD04_14725 NZ_CP010961.1 Protein Homology CDS 3096660 3097028 . - 0 ID=cds2898;Parent=gene2949;Dbxref=Genbank:WP_003809253.1;Name=WP_003809253.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003809253.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3097229 3097711 . - . ID=gene2950;Name=RD04_RS14755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14755;old_locus_tag=RD04_14730 NZ_CP010961.1 Protein Homology CDS 3097229 3097711 . - 0 ID=cds2899;Parent=gene2950;Dbxref=Genbank:WP_003809252.1;Name=WP_003809252.1;Note=nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ%3B the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription;gbkey=CDS;product=nucleotide-binding protein;protein_id=WP_003809252.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3097842 3098294 . + . ID=gene2951;Name=RD04_RS14760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14760;old_locus_tag=RD04_14735 NZ_CP010961.1 Protein Homology CDS 3097842 3098294 . + 0 ID=cds2900;Parent=gene2951;Dbxref=Genbank:WP_003819714.1;Name=WP_003819714.1;gbkey=CDS;product=membrane protein;protein_id=WP_003819714.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3098302 3098715 . - . ID=gene2952;Name=RD04_RS14765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14765;old_locus_tag=RD04_14740 NZ_CP010961.1 Protein Homology CDS 3098302 3098715 . - 0 ID=cds2901;Parent=gene2952;Dbxref=Genbank:WP_003819713.1;Name=WP_003819713.1;gbkey=CDS;product=extradiol dioxygenase;protein_id=WP_003819713.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3098837 3099511 . - . ID=gene2953;Name=RD04_RS14770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14770;old_locus_tag=RD04_14745 NZ_CP010961.1 Protein Homology CDS 3098837 3099511 . - 0 ID=cds2902;Parent=gene2953;Dbxref=Genbank:WP_023853532.1;Name=WP_023853532.1;gbkey=CDS;product=peptidase M23;protein_id=WP_023853532.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3099789 3100955 . + . ID=gene2954;Name=RD04_RS14775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14775;old_locus_tag=RD04_14750 NZ_CP010961.1 Protein Homology CDS 3099789 3100955 . + 0 ID=cds2903;Parent=gene2954;Dbxref=Genbank:WP_047122804.1;Name=WP_047122804.1;gbkey=CDS;product=chromate transporter;protein_id=WP_047122804.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3100958 3102427 . - . ID=gene2955;Name=RD04_RS14780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14780;old_locus_tag=RD04_14755 NZ_CP010961.1 Protein Homology CDS 3100958 3102427 . - 0 ID=cds2904;Parent=gene2955;Dbxref=Genbank:WP_010931201.1;Name=WP_010931201.1;gbkey=CDS;product=peptidase;protein_id=WP_010931201.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3102439 3104637 . - . ID=gene2956;Name=RD04_RS14785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14785;old_locus_tag=RD04_14760 NZ_CP010961.1 Protein Homology CDS 3102439 3104637 . - 0 ID=cds2905;Parent=gene2956;Dbxref=Genbank:WP_010931202.1;Name=WP_010931202.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_010931202.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3104800 3105237 . - . ID=gene2957;Name=RD04_RS14790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14790;old_locus_tag=RD04_14765 NZ_CP010961.1 Protein Homology CDS 3104800 3105237 . - 0 ID=cds2906;Parent=gene2957;Dbxref=Genbank:WP_004568261.1;Name=WP_004568261.1;gbkey=CDS;product=lipoprotein;protein_id=WP_004568261.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3105539 3105835 . + . ID=gene2958;Name=RD04_RS14795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14795;old_locus_tag=RD04_14770 NZ_CP010961.1 Protein Homology CDS 3105539 3105835 . + 0 ID=cds2907;Parent=gene2958;Dbxref=Genbank:WP_010931203.1;Name=WP_010931203.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931203.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3105847 3106716 . + . ID=gene2959;Name=RD04_RS14800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14800;old_locus_tag=RD04_14775 NZ_CP010961.1 Protein Homology CDS 3105847 3106716 . + 0 ID=cds2908;Parent=gene2959;Dbxref=Genbank:WP_023853526.1;Name=WP_023853526.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853526.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3106731 3107486 . + . ID=gene2960;Name=RD04_RS14805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14805;old_locus_tag=RD04_14780 NZ_CP010961.1 Protein Homology CDS 3106731 3107486 . + 0 ID=cds2909;Parent=gene2960;Dbxref=Genbank:WP_010931205.1;Name=WP_010931205.1;gbkey=CDS;product=DUF2063 domain-containing protein;protein_id=WP_010931205.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3107490 3107987 . + . ID=gene2961;Name=RD04_RS14810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14810;old_locus_tag=RD04_14785 NZ_CP010961.1 Protein Homology CDS 3107490 3107987 . + 0 ID=cds2910;Parent=gene2961;Dbxref=Genbank:WP_010931206.1;Name=WP_010931206.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931206.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3108019 3109442 . - . ID=gene2962;Name=RD04_RS14815;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14815;old_locus_tag=RD04_14790;pseudo=true NZ_CP010961.1 Protein Homology CDS 3108019 3109442 . - 0 ID=cds2911;Parent=gene2962;Note=frameshifted;gbkey=CDS;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3109581 3109928 . + . ID=gene2963;Name=RD04_RS14820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14820;old_locus_tag=RD04_14795 NZ_CP010961.1 Protein Homology CDS 3109581 3109928 . + 0 ID=cds2912;Parent=gene2963;Dbxref=Genbank:WP_003809223.1;Name=WP_003809223.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003809223.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3110049 3110396 . - . ID=gene2964;Name=RD04_RS14825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14825;old_locus_tag=RD04_14800 NZ_CP010961.1 Protein Homology CDS 3110049 3110396 . - 0 ID=cds2913;Parent=gene2964;Dbxref=Genbank:WP_003809222.1;Name=WP_003809222.1;gbkey=CDS;product=cytochrome o ubiquinol oxidase subunit IV;protein_id=WP_003809222.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3110396 3111007 . - . ID=gene2965;Name=RD04_RS14830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14830;old_locus_tag=RD04_14805 NZ_CP010961.1 Protein Homology CDS 3110396 3111007 . - 0 ID=cds2914;Parent=gene2965;Dbxref=Genbank:WP_003809221.1;Name=WP_003809221.1;gbkey=CDS;product=cytochrome o ubiquinol oxidase subunit III;protein_id=WP_003809221.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3111011 3112990 . - . ID=gene2966;Name=RD04_RS14835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14835;old_locus_tag=RD04_14810 NZ_CP010961.1 Protein Homology CDS 3111011 3112990 . - 0 ID=cds2915;Parent=gene2966;Dbxref=Genbank:WP_010931208.1;Name=WP_010931208.1;gbkey=CDS;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_010931208.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3112994 3113908 . - . ID=gene2967;Name=RD04_RS14840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14840;old_locus_tag=RD04_14815 NZ_CP010961.1 Protein Homology CDS 3112994 3113908 . - 0 ID=cds2916;Parent=gene2967;Dbxref=Genbank:WP_004568266.1;Name=WP_004568266.1;gbkey=CDS;product=cytochrome ubiquinol oxidase subunit II;protein_id=WP_004568266.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3114117 3114671 . - . ID=gene2968;Name=RD04_RS14845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14845;old_locus_tag=RD04_14820 NZ_CP010961.1 Protein Homology CDS 3114117 3114671 . - 0 ID=cds2917;Parent=gene2968;Dbxref=Genbank:WP_003809217.1;Name=WP_003809217.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_003809217.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3114668 3115879 . - . ID=gene2969;Name=RD04_RS14850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14850;old_locus_tag=RD04_14825 NZ_CP010961.1 Protein Homology CDS 3114668 3115879 . - 0 ID=cds2918;Parent=gene2969;Dbxref=Genbank:WP_010931210.1;Name=WP_010931210.1;gbkey=CDS;product=histidine kinase;protein_id=WP_010931210.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3116074 3116982 . - . ID=gene2970;Name=RD04_RS14855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14855;old_locus_tag=RD04_14830 NZ_CP010961.1 Protein Homology CDS 3116074 3116982 . - 0 ID=cds2919;Parent=gene2970;Dbxref=Genbank:WP_023998300.1;Name=WP_023998300.1;gbkey=CDS;product=methyltransferase;protein_id=WP_023998300.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3117220 3118086 . - . ID=gene2971;Name=RD04_RS14860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14860;old_locus_tag=RD04_14835 NZ_CP010961.1 Protein Homology CDS 3117220 3118086 . - 0 ID=cds2920;Parent=gene2971;Dbxref=Genbank:WP_010931212.1;Name=WP_010931212.1;gbkey=CDS;product=quercetin 2%2C3-dioxygenase;protein_id=WP_010931212.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3118202 3118728 . - . ID=gene2972;Name=RD04_RS14865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14865;old_locus_tag=RD04_14840;pseudo=true NZ_CP010961.1 Protein Homology CDS 3118202 3118728 . - 0 ID=cds2921;Parent=gene2972;Note=frameshifted;gbkey=CDS;product=histidine utilization protein HutD;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3118845 3119651 . - . ID=gene2973;Name=RD04_RS14870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14870;old_locus_tag=RD04_14845 NZ_CP010961.1 Protein Homology CDS 3118845 3119651 . - 0 ID=cds2922;Parent=gene2973;Dbxref=Genbank:WP_010931213.1;Name=WP_010931213.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931213.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3119705 3121063 . + . ID=gene2974;Name=RD04_RS14875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14875;old_locus_tag=RD04_14850 NZ_CP010961.1 Protein Homology CDS 3119705 3121063 . + 0 ID=cds2923;Parent=gene2974;Dbxref=Genbank:WP_010931214.1;Name=WP_010931214.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931214.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3121060 3122181 . - . ID=gene2975;Name=RD04_RS14880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14880;old_locus_tag=RD04_14855 NZ_CP010961.1 Protein Homology CDS 3121060 3122181 . - 0 ID=cds2924;Parent=gene2975;Dbxref=Genbank:WP_023999042.1;Name=WP_023999042.1;gbkey=CDS;product=CoA transferase;protein_id=WP_023999042.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3122308 3123219 . + . ID=gene2976;Name=RD04_RS14885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14885;old_locus_tag=RD04_14860 NZ_CP010961.1 Protein Homology CDS 3122308 3123219 . + 0 ID=cds2925;Parent=gene2976;Dbxref=Genbank:WP_003819684.1;Name=WP_003819684.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003819684.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3123243 3124232 . - . ID=gene2977;Name=RD04_RS14890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14890;old_locus_tag=RD04_14865 NZ_CP010961.1 Protein Homology CDS 3123243 3124232 . - 0 ID=cds2926;Parent=gene2977;Dbxref=Genbank:WP_010931216.1;Name=WP_010931216.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010931216.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3124257 3124724 . - . ID=gene2978;Name=RD04_RS14895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14895;old_locus_tag=RD04_14870 NZ_CP010961.1 Protein Homology CDS 3124257 3124724 . - 0 ID=cds2927;Parent=gene2978;Dbxref=Genbank:WP_010931217.1;Name=WP_010931217.1;gbkey=CDS;product=acyl dehydratase;protein_id=WP_010931217.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3124738 3125199 . - . ID=gene2979;Name=RD04_RS14900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14900;old_locus_tag=RD04_14875 NZ_CP010961.1 Protein Homology CDS 3124738 3125199 . - 0 ID=cds2928;Parent=gene2979;Dbxref=Genbank:WP_019247777.1;Name=WP_019247777.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247777.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3125483 3126118 . + . ID=gene2980;Name=RD04_RS14905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14905;old_locus_tag=RD04_14880 NZ_CP010961.1 Protein Homology CDS 3125483 3126118 . + 0 ID=cds2929;Parent=gene2980;Dbxref=Genbank:WP_049787781.1;Name=WP_049787781.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_049787781.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3126238 3127188 . + . ID=gene2981;Name=RD04_RS14910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14910;old_locus_tag=RD04_14885 NZ_CP010961.1 Protein Homology CDS 3126238 3127188 . + 0 ID=cds2930;Parent=gene2981;Dbxref=Genbank:WP_005015810.1;Name=WP_005015810.1;gbkey=CDS;product=transposase;protein_id=WP_005015810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3127334 3128458 . - . ID=gene2982;Name=RD04_RS14915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14915;old_locus_tag=RD04_14890 NZ_CP010961.1 Protein Homology CDS 3127334 3128458 . - 0 ID=cds2931;Parent=gene2982;Dbxref=Genbank:WP_047122802.1;Name=WP_047122802.1;gbkey=CDS;product=riboflavin biosynthesis protein RibD;protein_id=WP_047122802.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3128664 3129227 . + . ID=gene2983;Name=RD04_RS14920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14920;old_locus_tag=RD04_14895 NZ_CP010961.1 Protein Homology CDS 3128664 3129227 . + 0 ID=cds2932;Parent=gene2983;Dbxref=Genbank:WP_023853315.1;Name=WP_023853315.1;gbkey=CDS;product=isochorismatase;protein_id=WP_023853315.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3129240 3130209 . + . ID=gene2984;Name=RD04_RS14925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS14925;old_locus_tag=RD04_14900;pseudo=true NZ_CP010961.1 Protein Homology CDS 3129240 3130209 . + 0 ID=cds2933;Parent=gene2984;Note=frameshifted;gbkey=CDS;product=AraC family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3130222 3130704 . - . ID=gene2985;Name=RD04_RS14930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14930;old_locus_tag=RD04_14905 NZ_CP010961.1 Protein Homology CDS 3130222 3130704 . - 0 ID=cds2934;Parent=gene2985;Dbxref=Genbank:WP_003814871.1;Name=WP_003814871.1;gbkey=CDS;product=NrdR family transcriptional regulator;protein_id=WP_003814871.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3130862 3132109 . - . ID=gene2986;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=RD04_RS14935;old_locus_tag=RD04_14910 NZ_CP010961.1 Protein Homology CDS 3130862 3132109 . - 0 ID=cds2935;Parent=gene2986;Dbxref=Genbank:WP_003814873.1;Name=WP_003814873.1;Note=catalyzes the reaction of glycine with 5%2C10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate;gbkey=CDS;gene=glyA;product=serine hydroxymethyltransferase;protein_id=WP_003814873.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3132329 3132985 . - . ID=gene2987;Name=RD04_RS14940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14940;old_locus_tag=RD04_14915 NZ_CP010961.1 Protein Homology CDS 3132329 3132985 . - 0 ID=cds2936;Parent=gene2987;Dbxref=Genbank:WP_003820605.1;Name=WP_003820605.1;gbkey=CDS;product=phosphatidylethanolamine-binding protein;protein_id=WP_003820605.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3133021 3134250 . - . ID=gene2988;Name=RD04_RS14945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14945;old_locus_tag=RD04_14920 NZ_CP010961.1 Protein Homology CDS 3133021 3134250 . - 0 ID=cds2937;Parent=gene2988;Dbxref=Genbank:WP_003814877.1;Name=WP_003814877.1;Note=catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr);gbkey=CDS;product=tyrosine--tRNA ligase;protein_id=WP_003814877.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3134518 3135468 . + . ID=gene2989;Name=RD04_RS14950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14950;old_locus_tag=RD04_14925 NZ_CP010961.1 Protein Homology CDS 3134518 3135468 . + 0 ID=cds2938;Parent=gene2989;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3135560 3136975 . + . ID=gene2990;Name=RD04_RS14955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14955;old_locus_tag=RD04_14930 NZ_CP010961.1 Protein Homology CDS 3135560 3136975 . + 0 ID=cds2939;Parent=gene2990;Dbxref=Genbank:WP_010931221.1;Name=WP_010931221.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931221.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3136981 3138117 . + . ID=gene2991;Name=RD04_RS14960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14960;old_locus_tag=RD04_14935 NZ_CP010961.1 Protein Homology CDS 3136981 3138117 . + 0 ID=cds2940;Parent=gene2991;Dbxref=Genbank:WP_010931222.1;Name=WP_010931222.1;gbkey=CDS;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_010931222.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3138187 3138558 . - . ID=gene2992;Name=RD04_RS14965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14965;old_locus_tag=RD04_14940 NZ_CP010961.1 Protein Homology CDS 3138187 3138558 . - 0 ID=cds2941;Parent=gene2992;Dbxref=Genbank:WP_003814883.1;Name=WP_003814883.1;gbkey=CDS;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_003814883.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3138646 3139392 . - . ID=gene2993;Name=RD04_RS14970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14970;old_locus_tag=RD04_14945 NZ_CP010961.1 Protein Homology CDS 3138646 3139392 . - 0 ID=cds2942;Parent=gene2993;Dbxref=Genbank:WP_010931223.1;Name=WP_010931223.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931223.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3139429 3140493 . - . ID=gene2994;Name=RD04_RS14975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14975;old_locus_tag=RD04_14950 NZ_CP010961.1 Protein Homology CDS 3139429 3140493 . - 0 ID=cds2943;Parent=gene2994;Dbxref=Genbank:WP_003820599.1;Name=WP_003820599.1;gbkey=CDS;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_003820599.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3140682 3141074 . - . ID=gene2995;Name=RD04_RS14980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14980;old_locus_tag=RD04_14955 NZ_CP010961.1 Protein Homology CDS 3140682 3141074 . - 0 ID=cds2944;Parent=gene2995;Dbxref=Genbank:WP_010931224.1;Name=WP_010931224.1;gbkey=CDS;product=30S ribosomal protein S9;protein_id=WP_010931224.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3141084 3141512 . - . ID=gene2996;Name=RD04_RS14985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14985;old_locus_tag=RD04_14960 NZ_CP010961.1 Protein Homology CDS 3141084 3141512 . - 0 ID=cds2945;Parent=gene2996;Dbxref=Genbank:WP_010927106.1;Name=WP_010927106.1;gbkey=CDS;product=50S ribosomal protein L13;protein_id=WP_010927106.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3141808 3142905 . - . ID=gene2997;Name=RD04_RS14990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS14990;old_locus_tag=RD04_14965 NZ_CP010961.1 Protein Homology CDS 3141808 3142905 . - 0 ID=cds2946;Parent=gene2997;Dbxref=Genbank:WP_004567739.1;Name=WP_004567739.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_004567739.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3143247 3144611 . - . ID=gene2998;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;locus_tag=RD04_RS14995;old_locus_tag=RD04_14970 NZ_CP010961.1 Protein Homology CDS 3143247 3144611 . - 0 ID=cds2947;Parent=gene2998;Dbxref=Genbank:WP_004567741.1;Name=WP_004567741.1;Note=protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD;gbkey=CDS;gene=pmbA;product=peptidase C69;protein_id=WP_004567741.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3144670 3145221 . + . ID=gene2999;Name=RD04_RS15000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15000;old_locus_tag=RD04_14975 NZ_CP010961.1 Protein Homology CDS 3144670 3145221 . + 0 ID=cds2948;Parent=gene2999;Dbxref=Genbank:WP_023853313.1;Name=WP_023853313.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853313.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3145235 3145909 . + . ID=gene3000;Name=RD04_RS15005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15005;old_locus_tag=RD04_14980 NZ_CP010961.1 Protein Homology CDS 3145235 3145909 . + 0 ID=cds2949;Parent=gene3000;Dbxref=Genbank:WP_010931226.1;Name=WP_010931226.1;gbkey=CDS;product=carboxylesterase;protein_id=WP_010931226.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3146121 3147169 . + . ID=gene3001;Name=RD04_RS15010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15010;old_locus_tag=RD04_14985;pseudo=true NZ_CP010961.1 Protein Homology CDS 3146121 3147169 . + 0 ID=cds2950;Parent=gene3001;Note=frameshifted;gbkey=CDS;product=ABC transporter substrate-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3147166 3147975 . + . ID=gene3002;Name=RD04_RS15015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15015;old_locus_tag=RD04_14990 NZ_CP010961.1 Protein Homology CDS 3147166 3147975 . + 0 ID=cds2951;Parent=gene3002;Dbxref=Genbank:WP_010931227.1;Name=WP_010931227.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931227.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3147978 3148814 . + . ID=gene3003;Name=RD04_RS15020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15020;old_locus_tag=RD04_14995 NZ_CP010961.1 Protein Homology CDS 3147978 3148814 . + 0 ID=cds2952;Parent=gene3003;Dbxref=Genbank:WP_010931228.1;Name=WP_010931228.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931228.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3148829 3149521 . + . ID=gene3004;Name=RD04_RS15025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15025;old_locus_tag=RD04_15000 NZ_CP010961.1 Protein Homology CDS 3148829 3149521 . + 0 ID=cds2953;Parent=gene3004;Dbxref=Genbank:WP_003820594.1;Name=WP_003820594.1;gbkey=CDS;product=hydrolase;protein_id=WP_003820594.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3149533 3149922 . - . ID=gene3005;Name=RD04_RS15030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15030;old_locus_tag=RD04_15005 NZ_CP010961.1 Protein Homology CDS 3149533 3149922 . - 0 ID=cds2954;Parent=gene3005;Dbxref=Genbank:WP_003820593.1;Name=WP_003820593.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820593.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3150028 3151416 . - . ID=gene3006;Name=RD04_RS15035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15035;old_locus_tag=RD04_15010 NZ_CP010961.1 Protein Homology CDS 3150028 3151416 . - 0 ID=cds2955;Parent=gene3006;Dbxref=Genbank:WP_003820592.1;Name=WP_003820592.1;gbkey=CDS;product=ATP-dependent RNA helicase;protein_id=WP_003820592.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3151533 3153029 . - . ID=gene3007;Name=RD04_RS15040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15040;old_locus_tag=RD04_15015 NZ_CP010961.1 Protein Homology CDS 3151533 3153029 . - 0 ID=cds2956;Parent=gene3007;Dbxref=Genbank:WP_010931229.1;Name=WP_010931229.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931229.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3153326 3153999 . + . ID=gene3008;Name=RD04_RS15045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15045;old_locus_tag=RD04_15020;pseudo=true NZ_CP010961.1 Protein Homology CDS 3153326 3153999 . + 0 ID=cds2957;Parent=gene3008;Note=frameshifted;gbkey=CDS;product=GntR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3154146 3155048 . + . ID=gene3009;Name=RD04_RS15050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15050;old_locus_tag=RD04_15025 NZ_CP010961.1 GeneMarkS+ CDS 3154146 3155048 . + 0 ID=cds2958;Parent=gene3009;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3155045 3157503 . - . ID=gene3010;Name=RD04_RS15055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15055;old_locus_tag=RD04_15030;pseudo=true NZ_CP010961.1 Protein Homology CDS 3155045 3157503 . - 0 ID=cds2959;Parent=gene3010;Note=frameshifted;gbkey=CDS;product=GNAT family acetyltransferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3157639 3159045 . + . ID=gene3011;Name=RD04_RS15060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15060;old_locus_tag=RD04_15035 NZ_CP010961.1 Protein Homology CDS 3157639 3159045 . + 0 ID=cds2960;Parent=gene3011;Dbxref=Genbank:WP_033446281.1;Name=WP_033446281.1;gbkey=CDS;product=glutamate--tRNA ligase;protein_id=WP_033446281.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3159049 3160236 . - . ID=gene3012;Name=RD04_RS15065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15065;old_locus_tag=RD04_15040 NZ_CP010961.1 Protein Homology CDS 3159049 3160236 . - 0 ID=cds2961;Parent=gene3012;Dbxref=Genbank:WP_010931233.1;Name=WP_010931233.1;gbkey=CDS;product=transporter;protein_id=WP_010931233.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3160305 3160814 . - . ID=gene3013;Name=RD04_RS15070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15070;old_locus_tag=RD04_15045 NZ_CP010961.1 Protein Homology CDS 3160305 3160814 . - 0 ID=cds2962;Parent=gene3013;Dbxref=Genbank:WP_023998238.1;Name=WP_023998238.1;gbkey=CDS;product=lipoprotein;protein_id=WP_023998238.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3161016 3161468 . - . ID=gene3014;Name=RD04_RS15075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15075;old_locus_tag=RD04_15050 NZ_CP010961.1 Protein Homology CDS 3161016 3161468 . - 0 ID=cds2963;Parent=gene3014;Dbxref=Genbank:WP_003814925.1;Name=WP_003814925.1;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_003814925.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3161641 3161898 . - . ID=gene3015;Name=RD04_RS15080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15080;old_locus_tag=RD04_15055 NZ_CP010961.1 Protein Homology CDS 3161641 3161898 . - 0 ID=cds2964;Parent=gene3015;Dbxref=Genbank:WP_019247414.1;Name=WP_019247414.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247414.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3162030 3165092 . + . ID=gene3016;Name=RD04_RS15085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15085;old_locus_tag=RD04_15060 NZ_CP010961.1 Protein Homology CDS 3162030 3165092 . + 0 ID=cds2965;Parent=gene3016;Dbxref=Genbank:WP_019247415.1;Name=WP_019247415.1;gbkey=CDS;product=MFS transporter;protein_id=WP_019247415.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3165398 3168325 . + . ID=gene3017;Name=RD04_RS15090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15090;old_locus_tag=RD04_15065 NZ_CP010961.1 Protein Homology CDS 3165398 3168325 . + 0 ID=cds2966;Parent=gene3017;Dbxref=Genbank:WP_010931235.1;Name=WP_010931235.1;Note=Catalyzes the rate-limiting step in dNTP synthesis;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit alpha;protein_id=WP_010931235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3168347 3169543 . + . ID=gene3018;Name=RD04_RS15095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15095;old_locus_tag=RD04_15070 NZ_CP010961.1 Protein Homology CDS 3168347 3169543 . + 0 ID=cds2967;Parent=gene3018;Dbxref=Genbank:WP_003814929.1;Name=WP_003814929.1;Note=Catalyzes the rate-limiting step in dNTP synthesis;gbkey=CDS;product=ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_003814929.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3169861 3170388 . + . ID=gene3019;Name=RD04_RS15100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15100;old_locus_tag=RD04_15075 NZ_CP010961.1 Protein Homology CDS 3169861 3170388 . + 0 ID=cds2968;Parent=gene3019;Dbxref=Genbank:WP_010931236.1;Name=WP_010931236.1;gbkey=CDS;product=histone;protein_id=WP_010931236.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3170542 3171102 . + . ID=gene3020;Name=RD04_RS15105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15105;old_locus_tag=RD04_15080 NZ_CP010961.1 Protein Homology CDS 3170542 3171102 . + 0 ID=cds2969;Parent=gene3020;Dbxref=Genbank:WP_023853329.1;Name=WP_023853329.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853329.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3171110 3172564 . - . ID=gene3021;Name=RD04_RS15110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15110;old_locus_tag=RD04_15085 NZ_CP010961.1 Protein Homology CDS 3171110 3172564 . - 0 ID=cds2970;Parent=gene3021;Dbxref=Genbank:WP_023853325.1;Name=WP_023853325.1;gbkey=CDS;product=D-alanine--poly(phosphoribitol) ligase;protein_id=WP_023853325.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3172584 3173711 . - . ID=gene3022;Name=RD04_RS15115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15115;old_locus_tag=RD04_15090 NZ_CP010961.1 Protein Homology CDS 3172584 3173711 . - 0 ID=cds2971;Parent=gene3022;Dbxref=Genbank:WP_010931239.1;Name=WP_010931239.1;gbkey=CDS;product=membrane-bound O-acyltransferase;protein_id=WP_010931239.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3173719 3173844 . - . ID=gene3023;Name=RD04_RS15120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15120;old_locus_tag=RD04_15095 NZ_CP010961.1 Protein Homology CDS 3173719 3173844 . - 0 ID=cds2972;Parent=gene3023;Dbxref=Genbank:WP_003814939.1;Name=WP_003814939.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814939.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3173841 3175016 . - . ID=gene3024;Name=RD04_RS15125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15125;old_locus_tag=RD04_15100 NZ_CP010961.1 Protein Homology CDS 3173841 3175016 . - 0 ID=cds2973;Parent=gene3024;Dbxref=Genbank:WP_019248818.1;Name=WP_019248818.1;gbkey=CDS;product=protein involved in the transfer of D-alanine into teichoic acids;protein_id=WP_019248818.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3174994 3175233 . - . ID=gene3025;Name=RD04_RS15130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15130;old_locus_tag=RD04_15105 NZ_CP010961.1 Protein Homology CDS 3174994 3175233 . - 0 ID=cds2974;Parent=gene3025;Dbxref=Genbank:WP_003814943.1;Name=WP_003814943.1;gbkey=CDS;product=acyl carrier protein;protein_id=WP_003814943.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3175514 3176017 . - . ID=gene3026;Name=RD04_RS15135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15135;old_locus_tag=RD04_15110 NZ_CP010961.1 Protein Homology CDS 3175514 3176017 . - 0 ID=cds2975;Parent=gene3026;Dbxref=Genbank:WP_010931240.1;Name=WP_010931240.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010931240.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3176190 3177131 . - . ID=gene3027;Name=RD04_RS15140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15140;old_locus_tag=RD04_15115 NZ_CP010961.1 Protein Homology CDS 3176190 3177131 . - 0 ID=cds2976;Parent=gene3027;Dbxref=Genbank:WP_010931241.1;Name=WP_010931241.1;gbkey=CDS;product=sugar kinase;protein_id=WP_010931241.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3177143 3178240 . - . ID=gene3028;Name=RD04_RS15145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15145;old_locus_tag=RD04_15120 NZ_CP010961.1 Protein Homology CDS 3177143 3178240 . - 0 ID=cds2977;Parent=gene3028;Dbxref=Genbank:WP_010931242.1;Name=WP_010931242.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931242.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3178266 3179187 . - . ID=gene3029;Name=RD04_RS15150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15150;old_locus_tag=RD04_15125;pseudo=true NZ_CP010961.1 Protein Homology CDS 3178266 3179187 . - 0 ID=cds2978;Parent=gene3029;Note=frameshifted;gbkey=CDS;product=ribosomal protein L11 methyltransferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3179206 3180552 . - . ID=gene3030;Name=RD04_RS15155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15155;old_locus_tag=RD04_15130 NZ_CP010961.1 Protein Homology CDS 3179206 3180552 . - 0 ID=cds2979;Parent=gene3030;Dbxref=Genbank:WP_003814951.1;Name=WP_003814951.1;Note=an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase%2C an enzyme that catalyzes the formation of malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism;gbkey=CDS;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_003814951.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3180562 3181011 . - . ID=gene3031;Name=RD04_RS15160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15160;old_locus_tag=RD04_15135 NZ_CP010961.1 Protein Homology CDS 3180562 3181011 . - 0 ID=cds2980;Parent=gene3031;Dbxref=Genbank:WP_003814952.1;Name=WP_003814952.1;Note=composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex%2C the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism;gbkey=CDS;product=acetyl-CoA carboxylase biotin carboxyl carrier protein subunit;protein_id=WP_003814952.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3181101 3181535 . - . ID=gene3032;Name=RD04_RS15165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15165;old_locus_tag=RD04_15140 NZ_CP010961.1 Protein Homology CDS 3181101 3181535 . - 0 ID=cds2981;Parent=gene3032;Dbxref=Genbank:WP_003814953.1;Name=WP_003814953.1;gbkey=CDS;product=3-dehydroquinate dehydratase;protein_id=WP_003814953.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3181614 3182162 . - . ID=gene3033;Name=RD04_RS15170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15170;old_locus_tag=RD04_15145 NZ_CP010961.1 Protein Homology CDS 3181614 3182162 . - 0 ID=cds2982;Parent=gene3033;Dbxref=Genbank:WP_023853327.1;Name=WP_023853327.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023853327.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3182245 3183615 . + . ID=gene3034;Name=RD04_RS15175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15175;old_locus_tag=RD04_15150 NZ_CP010961.1 Protein Homology CDS 3182245 3183615 . + 0 ID=cds2983;Parent=gene3034;Dbxref=Genbank:WP_003814955.1;Name=WP_003814955.1;Note=ligates L-alanyl-gamma-D-glutamyl-meso-diaminopimelate to UDP-N-acetylmuramic acid for reincorporation into peptidoglycan;gbkey=CDS;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=WP_003814955.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3183626 3184219 . + . ID=gene3035;Name=RD04_RS15180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15180;old_locus_tag=RD04_15155 NZ_CP010961.1 Protein Homology CDS 3183626 3184219 . + 0 ID=cds2984;Parent=gene3035;Dbxref=Genbank:WP_010931244.1;Name=WP_010931244.1;gbkey=CDS;product=esterase;protein_id=WP_010931244.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3184291 3186174 . + . ID=gene3036;Name=RD04_RS15185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15185;old_locus_tag=RD04_15160 NZ_CP010961.1 Protein Homology CDS 3184291 3186174 . + 0 ID=cds2985;Parent=gene3036;Dbxref=Genbank:WP_014486102.1;Name=WP_014486102.1;gbkey=CDS;product=ribonuclease II;protein_id=WP_014486102.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3186212 3187111 . + . ID=gene3037;Name=RD04_RS15190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15190;old_locus_tag=RD04_15165 NZ_CP010961.1 Protein Homology CDS 3186212 3187111 . + 0 ID=cds2986;Parent=gene3037;Dbxref=Genbank:WP_010931246.1;Name=WP_010931246.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931246.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3187108 3187971 . + . ID=gene3038;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=RD04_RS15195;old_locus_tag=RD04_15170 NZ_CP010961.1 Protein Homology CDS 3187108 3187971 . + 0 ID=cds2987;Parent=gene3038;Dbxref=Genbank:WP_010931247.1;Name=WP_010931247.1;Note=AroE%3B catalyzes the conversion of shikimate to 3-dehydroshikimate;gbkey=CDS;gene=aroE;product=shikimate dehydrogenase;protein_id=WP_010931247.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3188118 3189020 . + . ID=gene3039;Name=RD04_RS15200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15200;old_locus_tag=RD04_15175 NZ_CP010961.1 GeneMarkS+ CDS 3188118 3189020 . + 0 ID=cds2988;Parent=gene3039;Dbxref=Genbank:WP_062826649.1;Name=WP_062826649.1;gbkey=CDS;product=integrase;protein_id=WP_062826649.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3189167 3190069 . + . ID=gene3040;Name=RD04_RS15205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15205;old_locus_tag=RD04_15180 NZ_CP010961.1 GeneMarkS+ CDS 3189167 3190069 . + 0 ID=cds2989;Parent=gene3040;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3190078 3190626 . + . ID=gene3041;Name=RD04_RS15210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15210;old_locus_tag=RD04_15185 NZ_CP010961.1 Protein Homology CDS 3190078 3190626 . + 0 ID=cds2990;Parent=gene3041;Dbxref=Genbank:WP_010931248.1;Name=WP_010931248.1;gbkey=CDS;product=phospholipid:lipid A palmitoyltransferase;protein_id=WP_010931248.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3190623 3191231 . - . ID=gene3042;Name=RD04_RS15215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15215;old_locus_tag=RD04_15190 NZ_CP010961.1 Protein Homology CDS 3190623 3191231 . - 0 ID=cds2991;Parent=gene3042;Dbxref=Genbank:WP_003814557.1;Name=WP_003814557.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814557.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3191414 3191872 . - . ID=gene3043;Name=RD04_RS15220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15220;old_locus_tag=RD04_15195 NZ_CP010961.1 Protein Homology CDS 3191414 3191872 . - 0 ID=cds2992;Parent=gene3043;Dbxref=Genbank:WP_023852720.1;Name=WP_023852720.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_023852720.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3191891 3193147 . - . ID=gene3044;Name=RD04_RS15225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15225;old_locus_tag=RD04_15200 NZ_CP010961.1 Protein Homology CDS 3191891 3193147 . - 0 ID=cds2993;Parent=gene3044;Dbxref=Genbank:WP_023852707.1;Name=WP_023852707.1;gbkey=CDS;product=FAD-dependent oxidoreductase;protein_id=WP_023852707.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3193203 3194015 . - . ID=gene3045;Name=RD04_RS15230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15230;old_locus_tag=RD04_15205 NZ_CP010961.1 Protein Homology CDS 3193203 3194015 . - 0 ID=cds2994;Parent=gene3045;Dbxref=Genbank:WP_010931251.1;Name=WP_010931251.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010931251.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3194130 3194684 . + . ID=gene3046;Name=RD04_RS15235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15235;old_locus_tag=RD04_15210 NZ_CP010961.1 Protein Homology CDS 3194130 3194684 . + 0 ID=cds2995;Parent=gene3046;Dbxref=Genbank:WP_003814561.1;Name=WP_003814561.1;gbkey=CDS;product=cysteine dioxygenase;protein_id=WP_003814561.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3194694 3195683 . - . ID=gene3047;Name=RD04_RS15240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15240;old_locus_tag=RD04_15215 NZ_CP010961.1 Protein Homology CDS 3194694 3195683 . - 0 ID=cds2996;Parent=gene3047;Dbxref=Genbank:WP_023998380.1;Name=WP_023998380.1;gbkey=CDS;product=tripartite tricarboxylate transporter family receptor;protein_id=WP_023998380.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3195863 3196582 . - . ID=gene3048;Name=RD04_RS15245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15245;old_locus_tag=RD04_15220 NZ_CP010961.1 Protein Homology CDS 3195863 3196582 . - 0 ID=cds2997;Parent=gene3048;Dbxref=Genbank:WP_003814563.1;Name=WP_003814563.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814563.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3196599 3199334 . - . ID=gene3049;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=RD04_RS15250;old_locus_tag=RD04_15225 NZ_CP010961.1 Protein Homology CDS 3196599 3199334 . - 0 ID=cds2998;Parent=gene3049;Dbxref=Genbank:WP_003814564.1;Name=WP_003814564.1;Note=functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins;gbkey=CDS;gene=secA;product=protein translocase subunit SecA;protein_id=WP_003814564.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3199514 3200500 . - . ID=gene3050;Name=RD04_RS15255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15255;old_locus_tag=RD04_15230 NZ_CP010961.1 Protein Homology CDS 3199514 3200500 . - 0 ID=cds2999;Parent=gene3050;Dbxref=Genbank:WP_003814565.1;Name=WP_003814565.1;gbkey=CDS;product=peptidase M23;protein_id=WP_003814565.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3200629 3201036 . + . ID=gene3051;Name=RD04_RS15260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15260;old_locus_tag=RD04_15235 NZ_CP010961.1 Protein Homology CDS 3200629 3201036 . + 0 ID=cds3000;Parent=gene3051;Dbxref=Genbank:WP_010931255.1;Name=WP_010931255.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931255.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3201148 3202071 . - . ID=gene3052;Name=RD04_RS15265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15265;old_locus_tag=RD04_15240 NZ_CP010961.1 Protein Homology CDS 3201148 3202071 . - 0 ID=cds3001;Parent=gene3052;Dbxref=Genbank:WP_003814567.1;Name=WP_003814567.1;gbkey=CDS;product=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase;protein_id=WP_003814567.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3202300 3203484 . - . ID=gene3053;Name=RD04_RS15270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15270;old_locus_tag=RD04_15245 NZ_CP010961.1 Protein Homology CDS 3202300 3203484 . - 0 ID=cds3002;Parent=gene3053;Dbxref=Genbank:WP_003814568.1;Name=WP_003814568.1;gbkey=CDS;product=cell division protein FtsZ;protein_id=WP_003814568.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3203673 3204899 . - . ID=gene3054;Name=RD04_RS15275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15275;old_locus_tag=RD04_15250 NZ_CP010961.1 Protein Homology CDS 3203673 3204899 . - 0 ID=cds3003;Parent=gene3054;Dbxref=Genbank:WP_003814569.1;Name=WP_003814569.1;gbkey=CDS;product=cell division protein FtsA;protein_id=WP_003814569.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3204904 3205725 . - . ID=gene3055;Name=RD04_RS15280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15280;old_locus_tag=RD04_15255 NZ_CP010961.1 Protein Homology CDS 3204904 3205725 . - 0 ID=cds3004;Parent=gene3055;Dbxref=Genbank:WP_003814570.1;Name=WP_003814570.1;gbkey=CDS;product=cell division protein FtsQ;protein_id=WP_003814570.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3205738 3206688 . - . ID=gene3056;Name=RD04_RS15285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15285;old_locus_tag=RD04_15260 NZ_CP010961.1 Protein Homology CDS 3205738 3206688 . - 0 ID=cds3005;Parent=gene3056;Dbxref=Genbank:WP_003814571.1;Name=WP_003814571.1;gbkey=CDS;product=D-alanine--D-alanine ligase;protein_id=WP_003814571.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3206685 3208091 . - . ID=gene3057;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=RD04_RS15290;old_locus_tag=RD04_15265 NZ_CP010961.1 Protein Homology CDS 3206685 3208091 . - 0 ID=cds3006;Parent=gene3057;Dbxref=Genbank:WP_010931256.1;Name=WP_010931256.1;Note=Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis;gbkey=CDS;gene=murC;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_010931256.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3208088 3209161 . - . ID=gene3058;Name=RD04_RS15295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15295;old_locus_tag=RD04_15270 NZ_CP010961.1 Protein Homology CDS 3208088 3209161 . - 0 ID=cds3007;Parent=gene3058;Dbxref=Genbank:WP_010931257.1;Name=WP_010931257.1;gbkey=CDS;product=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase;protein_id=WP_010931257.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3209158 3210351 . - . ID=gene3059;Name=RD04_RS15300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15300;old_locus_tag=RD04_15275 NZ_CP010961.1 Protein Homology CDS 3209158 3210351 . - 0 ID=cds3008;Parent=gene3059;Dbxref=Genbank:WP_010931258.1;Name=WP_010931258.1;gbkey=CDS;product=cell division protein FtsW;protein_id=WP_010931258.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3210348 3211880 . - . ID=gene3060;Name=RD04_RS15305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15305;old_locus_tag=RD04_15280 NZ_CP010961.1 Protein Homology CDS 3210348 3211880 . - 0 ID=cds3009;Parent=gene3060;Dbxref=Genbank:WP_010931259.1;Name=WP_010931259.1;gbkey=CDS;product=UDP-N-acetylmuramoylalanine--D-glutamate ligase;protein_id=WP_010931259.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3211877 3213046 . - . ID=gene3061;Name=RD04_RS15310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15310;old_locus_tag=RD04_15285 NZ_CP010961.1 Protein Homology CDS 3211877 3213046 . - 0 ID=cds3010;Parent=gene3061;Dbxref=Genbank:WP_019247664.1;Name=WP_019247664.1;gbkey=CDS;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=WP_019247664.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3213036 3215873 . - . ID=gene3062;Name=RD04_RS15315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15315;old_locus_tag=RD04_15290 NZ_CP010961.1 Protein Homology CDS 3213036 3215873 . - 0 ID=cds3011;Parent=gene3062;Dbxref=Genbank:WP_010931260.1;Name=WP_010931260.1;gbkey=CDS;product=UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C 6-diaminopimelate ligase;protein_id=WP_010931260.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3215870 3217600 . - . ID=gene3063;Name=RD04_RS15320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15320;old_locus_tag=RD04_15295 NZ_CP010961.1 Protein Homology CDS 3215870 3217600 . - 0 ID=cds3012;Parent=gene3063;Dbxref=Genbank:WP_010931261.1;Name=WP_010931261.1;gbkey=CDS;product=cell division protein;protein_id=WP_010931261.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3217597 3217875 . - . ID=gene3064;Name=RD04_RS15325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15325;old_locus_tag=RD04_15300 NZ_CP010961.1 Protein Homology CDS 3217597 3217875 . - 0 ID=cds3013;Parent=gene3064;Dbxref=Genbank:WP_010931262.1;Name=WP_010931262.1;gbkey=CDS;product=cell division protein FtsL;protein_id=WP_010931262.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3217875 3218969 . - . ID=gene3065;Name=RD04_RS15330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15330;old_locus_tag=RD04_15305 NZ_CP010961.1 Protein Homology CDS 3217875 3218969 . - 0 ID=cds3014;Parent=gene3065;Dbxref=Genbank:WP_003814582.1;Name=WP_003814582.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase H;protein_id=WP_003814582.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3218978 3219406 . - . ID=gene3066;Name=RD04_RS15335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15335;old_locus_tag=RD04_15310 NZ_CP010961.1 Protein Homology CDS 3218978 3219406 . - 0 ID=cds3015;Parent=gene3066;Dbxref=Genbank:WP_010931263.1;Name=WP_010931263.1;gbkey=CDS;product=division/cell wall cluster transcriptional repressor MraZ;protein_id=WP_010931263.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3219685 3220102 . - . ID=gene3067;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=RD04_RS15340;old_locus_tag=RD04_19575 NZ_CP010961.1 cmsearch ncRNA 3219685 3220102 . - . ID=rna51;Parent=gene3067;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;ncrna_class=RNase_P_RNA;product=RNase P RNA component class A NZ_CP010961.1 cmsearch exon 3219685 3220102 . - . ID=id56;Parent=rna51;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;ncrna_class=RNase_P_RNA;product=RNase P RNA component class A NZ_CP010961.1 RefSeq gene 3220209 3222017 . + . ID=gene3068;Name=RD04_RS15345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15345;old_locus_tag=RD04_15315 NZ_CP010961.1 Protein Homology CDS 3220209 3222017 . + 0 ID=cds3016;Parent=gene3068;Dbxref=Genbank:WP_010931264.1;Name=WP_010931264.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931264.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3222057 3223136 . - . ID=gene3069;Name=RD04_RS15350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15350;old_locus_tag=RD04_15320 NZ_CP010961.1 Protein Homology CDS 3222057 3223136 . - 0 ID=cds3017;Parent=gene3069;Dbxref=Genbank:WP_010931265.1;Name=WP_010931265.1;gbkey=CDS;product=dihydroorotase;protein_id=WP_010931265.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3223133 3224326 . - . ID=gene3070;Name=RD04_RS15355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15355;old_locus_tag=RD04_15325 NZ_CP010961.1 Protein Homology CDS 3223133 3224326 . - 0 ID=cds3018;Parent=gene3070;Dbxref=Genbank:WP_003820761.1;Name=WP_003820761.1;gbkey=CDS;product=hydrolase;protein_id=WP_003820761.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3224476 3224754 . + . ID=gene3071;Name=RD04_RS15360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15360;old_locus_tag=RD04_15330 NZ_CP010961.1 Protein Homology CDS 3224476 3224754 . + 0 ID=cds3019;Parent=gene3071;Dbxref=Genbank:WP_003814592.1;Name=WP_003814592.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814592.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3225084 3225449 . - . ID=gene3072;Name=RD04_RS15365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15365;old_locus_tag=RD04_15335 NZ_CP010961.1 Protein Homology CDS 3225084 3225449 . - 0 ID=cds3020;Parent=gene3072;Dbxref=Genbank:WP_023995307.1;Name=WP_023995307.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023995307.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3226041 3226153 . - . ID=gene3073;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=RD04_RS15370;old_locus_tag=RD04_15340 NZ_CP010961.1 cmsearch rRNA 3226041 3226153 . - . ID=rna52;Parent=gene3073;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;product=5S ribosomal RNA NZ_CP010961.1 cmsearch exon 3226041 3226153 . - . ID=id57;Parent=rna52;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;product=5S ribosomal RNA NZ_CP010961.1 RefSeq gene 3226317 3229217 . - . ID=gene3074;Name=RD04_RS15375;gbkey=Gene;gene_biotype=rRNA;locus_tag=RD04_RS15375;old_locus_tag=RD04_15345 NZ_CP010961.1 RefSeq rRNA 3226317 3229217 . - . ID=rna53;Parent=gene3074;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010961.1 RefSeq exon 3226317 3229217 . - . ID=id58;Parent=rna53;gbkey=rRNA;product=23S ribosomal RNA NZ_CP010961.1 RefSeq gene 3229525 3229600 . - . ID=gene3075;Name=RD04_RS15380;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS15380;old_locus_tag=RD04_15350 NZ_CP010961.1 tRNAscan-SE tRNA 3229525 3229600 . - . ID=rna54;Parent=gene3075;anticodon=(pos:complement(3229565..3229567));gbkey=tRNA;product=tRNA-Ala NZ_CP010961.1 tRNAscan-SE exon 3229525 3229600 . - . ID=id59;Parent=rna54;anticodon=(pos:complement(3229565..3229567));gbkey=tRNA;product=tRNA-Ala NZ_CP010961.1 RefSeq gene 3229621 3229697 . - . ID=gene3076;Name=RD04_RS15385;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS15385;old_locus_tag=RD04_15355 NZ_CP010961.1 tRNAscan-SE tRNA 3229621 3229697 . - . ID=rna55;Parent=gene3076;anticodon=(pos:complement(3229661..3229663));gbkey=tRNA;product=tRNA-Ile NZ_CP010961.1 tRNAscan-SE exon 3229621 3229697 . - . ID=id60;Parent=rna55;anticodon=(pos:complement(3229661..3229663));gbkey=tRNA;product=tRNA-Ile NZ_CP010961.1 RefSeq gene 3229791 3231331 . - . ID=gene3077;Name=RD04_RS15390;gbkey=Gene;gene_biotype=rRNA;locus_tag=RD04_RS15390;old_locus_tag=RD04_15360 NZ_CP010961.1 RefSeq rRNA 3229791 3231331 . - . ID=rna56;Parent=gene3077;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010961.1 RefSeq exon 3229791 3231331 . - . ID=id61;Parent=rna56;gbkey=rRNA;product=16S ribosomal RNA NZ_CP010961.1 RefSeq gene 3232200 3232676 . - . ID=gene3078;Name=RD04_RS15395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15395;old_locus_tag=RD04_15365 NZ_CP010961.1 Protein Homology CDS 3232200 3232676 . - 0 ID=cds3021;Parent=gene3078;Dbxref=Genbank:WP_003820758.1;Name=WP_003820758.1;gbkey=CDS;product=leucine-responsive regulatory protein;protein_id=WP_003820758.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3232829 3233941 . + . ID=gene3079;Name=RD04_RS15400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15400;old_locus_tag=RD04_15370 NZ_CP010961.1 Protein Homology CDS 3232829 3233941 . + 0 ID=cds3022;Parent=gene3079;Dbxref=Genbank:WP_010931267.1;Name=WP_010931267.1;gbkey=CDS;product=hemolysin;protein_id=WP_010931267.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3234009 3234569 . - . ID=gene3080;Name=RD04_RS15405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15405;old_locus_tag=RD04_15375 NZ_CP010961.1 Protein Homology CDS 3234009 3234569 . - 0 ID=cds3023;Parent=gene3080;Dbxref=Genbank:WP_010931268.1;Name=WP_010931268.1;gbkey=CDS;product=peptide-methionine (S)-S-oxide reductase;protein_id=WP_010931268.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3234593 3234925 . - . ID=gene3081;Name=RD04_RS15410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15410;old_locus_tag=RD04_15380 NZ_CP010961.1 Protein Homology CDS 3234593 3234925 . - 0 ID=cds3024;Parent=gene3081;Dbxref=Genbank:WP_010929235.1;Name=WP_010929235.1;gbkey=CDS;product=cytochrome c552;protein_id=WP_010929235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3234909 3236597 . - . ID=gene3082;Name=RD04_RS15415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15415;old_locus_tag=RD04_15385 NZ_CP010961.1 Protein Homology CDS 3234909 3236597 . - 0 ID=cds3025;Parent=gene3082;Dbxref=Genbank:WP_010931269.1;Name=WP_010931269.1;Note=catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis;gbkey=CDS;product=dihydroxy-acid dehydratase;protein_id=WP_010931269.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3236717 3237505 . + . ID=gene3083;Name=RD04_RS15420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15420;old_locus_tag=RD04_15390 NZ_CP010961.1 Protein Homology CDS 3236717 3237505 . + 0 ID=cds3026;Parent=gene3083;Dbxref=Genbank:WP_003820749.1;Name=WP_003820749.1;gbkey=CDS;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_003820749.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3237480 3238112 . - . ID=gene3084;Name=RD04_RS15425;end_range=3238112,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15425;old_locus_tag=RD04_15395;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3237480 3238112 . - 0 ID=cds3027;Parent=gene3084;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=3238112,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3238213 3239163 . + . ID=gene3085;Name=RD04_RS15430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15430;old_locus_tag=RD04_15400 NZ_CP010961.1 Protein Homology CDS 3238213 3239163 . + 0 ID=cds3028;Parent=gene3085;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3239376 3239561 . - . ID=gene3086;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=RD04_RS15435 NZ_CP010961.1 cmsearch ncRNA 3239376 3239561 . - . ID=rna57;Parent=gene3086;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;ncrna_class=other;product=6S RNA NZ_CP010961.1 cmsearch exon 3239376 3239561 . - . ID=id62;Parent=rna57;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;ncrna_class=other;product=6S RNA NZ_CP010961.1 RefSeq gene 3239608 3239919 . - . ID=gene3087;Name=RD04_RS15440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15440;old_locus_tag=RD04_15405 NZ_CP010961.1 Protein Homology CDS 3239608 3239919 . - 0 ID=cds3029;Parent=gene3087;Dbxref=Genbank:WP_003814611.1;Name=WP_003814611.1;gbkey=CDS;product=cell division protein ZapA;protein_id=WP_003814611.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3239919 3240449 . - . ID=gene3088;Name=RD04_RS15445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15445;old_locus_tag=RD04_15410 NZ_CP010961.1 Protein Homology CDS 3239919 3240449 . - 0 ID=cds3030;Parent=gene3088;Dbxref=Genbank:WP_003820745.1;Name=WP_003820745.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820745.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3240660 3241562 . + . ID=gene3089;Name=RD04_RS15450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15450;old_locus_tag=RD04_15415 NZ_CP010961.1 GeneMarkS+ CDS 3240660 3241562 . + 0 ID=cds3031;Parent=gene3089;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3241661 3242611 . + . ID=gene3090;Name=RD04_RS15455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15455;old_locus_tag=RD04_15420 NZ_CP010961.1 Protein Homology CDS 3241661 3242611 . + 0 ID=cds3032;Parent=gene3090;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3242901 3243365 . + . ID=gene3091;Name=RD04_RS15460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15460;old_locus_tag=RD04_15425 NZ_CP010961.1 Protein Homology CDS 3242901 3243365 . + 0 ID=cds3033;Parent=gene3091;Dbxref=Genbank:WP_003820744.1;Name=WP_003820744.1;gbkey=CDS;product=membrane protein;protein_id=WP_003820744.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3243380 3244885 . + . ID=gene3092;Name=RD04_RS15465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15465;old_locus_tag=RD04_15430 NZ_CP010961.1 Protein Homology CDS 3243380 3244885 . + 0 ID=cds3034;Parent=gene3092;Dbxref=Genbank:WP_010931270.1;Name=WP_010931270.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931270.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3245142 3246746 . + . ID=gene3093;Name=RD04_RS15470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15470;old_locus_tag=RD04_15435 NZ_CP010961.1 Protein Homology CDS 3245142 3246746 . + 0 ID=cds3035;Parent=gene3093;Dbxref=Genbank:WP_023853019.1;Name=WP_023853019.1;gbkey=CDS;product=gamma-glutamyltransferase;protein_id=WP_023853019.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3246802 3247707 . + . ID=gene3094;Name=RD04_RS15475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15475;old_locus_tag=RD04_15440 NZ_CP010961.1 Protein Homology CDS 3246802 3247707 . + 0 ID=cds3036;Parent=gene3094;Dbxref=Genbank:WP_003814620.1;Name=WP_003814620.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_003814620.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3247756 3248151 . - . ID=gene3095;Name=RD04_RS15480;end_range=3248151,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15480;old_locus_tag=RD04_15445;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3247756 3248151 . - 0 ID=cds3037;Parent=gene3095;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=3248151,.;gbkey=CDS;partial=true;product=FMN-dependent NADH-azoreductase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3248148 3249050 . - . ID=gene3096;Name=RD04_RS15485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15485;old_locus_tag=RD04_15450 NZ_CP010961.1 GeneMarkS+ CDS 3248148 3249050 . - 0 ID=cds3038;Parent=gene3096;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3249237 3249989 . + . ID=gene3097;Name=RD04_RS15490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15490;old_locus_tag=RD04_15455 NZ_CP010961.1 Protein Homology CDS 3249237 3249989 . + 0 ID=cds3039;Parent=gene3097;Dbxref=Genbank:WP_003818450.1;Name=WP_003818450.1;gbkey=CDS;product=uracil-DNA glycosylase;protein_id=WP_003818450.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3250264 3251952 . + . ID=gene3098;Name=RD04_RS15495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15495;old_locus_tag=RD04_15460 NZ_CP010961.1 Protein Homology CDS 3250264 3251952 . + 0 ID=cds3040;Parent=gene3098;Dbxref=Genbank:WP_023853440.1;Name=WP_023853440.1;gbkey=CDS;product=DEAD/DEAH box helicase;protein_id=WP_023853440.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3252041 3253231 . + . ID=gene3099;Name=RD04_RS15500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15500;old_locus_tag=RD04_15465 NZ_CP010961.1 Protein Homology CDS 3252041 3253231 . + 0 ID=cds3041;Parent=gene3099;Dbxref=Genbank:WP_023995245.1;Name=WP_023995245.1;gbkey=CDS;product=SAM-dependent methyltransferase;protein_id=WP_023995245.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3253246 3254340 . - . ID=gene3100;Name=RD04_RS15505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15505;old_locus_tag=RD04_15470 NZ_CP010961.1 Protein Homology CDS 3253246 3254340 . - 0 ID=cds3042;Parent=gene3100;Dbxref=Genbank:WP_010931274.1;Name=WP_010931274.1;Note=catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA%3B these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity;gbkey=CDS;product=CCA-adding enzyme;protein_id=WP_010931274.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3254337 3256400 . - . ID=gene3101;Name=RD04_RS15510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15510;old_locus_tag=RD04_15475 NZ_CP010961.1 Protein Homology CDS 3254337 3256400 . - 0 ID=cds3043;Parent=gene3101;Dbxref=Genbank:WP_010931275.1;Name=WP_010931275.1;gbkey=CDS;product=transglycosylase;protein_id=WP_010931275.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3256476 3257156 . + . ID=gene3102;Name=RD04_RS15515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15515;old_locus_tag=RD04_15480 NZ_CP010961.1 Protein Homology CDS 3256476 3257156 . + 0 ID=cds3044;Parent=gene3102;Dbxref=Genbank:WP_010931276.1;Name=WP_010931276.1;gbkey=CDS;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_010931276.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3257467 3258807 . + . ID=gene3103;Name=RD04_RS15520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15520;old_locus_tag=RD04_15485 NZ_CP010961.1 Protein Homology CDS 3257467 3258807 . + 0 ID=cds3045;Parent=gene3103;Dbxref=Genbank:WP_023998166.1;Name=WP_023998166.1;gbkey=CDS;product=MFS transporter;protein_id=WP_023998166.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3258809 3259828 . + . ID=gene3104;Name=RD04_RS15525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15525;old_locus_tag=RD04_15490 NZ_CP010961.1 Protein Homology CDS 3258809 3259828 . + 0 ID=cds3046;Parent=gene3104;Dbxref=Genbank:WP_003818444.1;Name=WP_003818444.1;gbkey=CDS;product=acetylpolyamine aminohydrolase;protein_id=WP_003818444.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3259892 3260863 . + . ID=gene3105;Name=RD04_RS15530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15530;old_locus_tag=RD04_15495 NZ_CP010961.1 Protein Homology CDS 3259892 3260863 . + 0 ID=cds3047;Parent=gene3105;Dbxref=Genbank:WP_003818443.1;Name=WP_003818443.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003818443.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3260928 3261830 . - . ID=gene3106;Name=RD04_RS15535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15535;old_locus_tag=RD04_15500 NZ_CP010961.1 GeneMarkS+ CDS 3260928 3261830 . - 0 ID=cds3048;Parent=gene3106;Dbxref=Genbank:WP_039250367.1;Name=WP_039250367.1;gbkey=CDS;product=integrase;protein_id=WP_039250367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3261977 3262819 . - . ID=gene3107;Name=RD04_RS15540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15540;old_locus_tag=RD04_15505 NZ_CP010961.1 Protein Homology CDS 3261977 3262819 . - 0 ID=cds3049;Parent=gene3107;Dbxref=Genbank:WP_003807199.1;Name=WP_003807199.1;gbkey=CDS;product=methylenetetrahydrofolate reductase [NAD(P)H];protein_id=WP_003807199.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3262819 3263154 . - . ID=gene3108;Name=RD04_RS15545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15545;old_locus_tag=RD04_15510 NZ_CP010961.1 Protein Homology CDS 3262819 3263154 . - 0 ID=cds3050;Parent=gene3108;Dbxref=Genbank:WP_010931277.1;Name=WP_010931277.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931277.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3263225 3264643 . - . ID=gene3109;Name=RD04_RS15550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15550;old_locus_tag=RD04_15515 NZ_CP010961.1 Protein Homology CDS 3263225 3264643 . - 0 ID=cds3051;Parent=gene3109;Dbxref=Genbank:WP_010931278.1;Name=WP_010931278.1;Note=catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine;gbkey=CDS;product=adenosylhomocysteinase;protein_id=WP_010931278.1;transl_table=11 NZ_CP010961.1 cmsearch binding_site 3264745 3264865 . - . ID=id63;Dbxref=RFAM:RF01057;Note=S-adenosyl-L-homocysteine riboswitch;gbkey=misc_binding NZ_CP010961.1 RefSeq gene 3264923 3265963 . - . ID=gene3110;Name=RD04_RS15555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15555;old_locus_tag=RD04_15520 NZ_CP010961.1 Protein Homology CDS 3264923 3265963 . - 0 ID=cds3052;Parent=gene3110;Dbxref=Genbank:WP_003807194.1;Name=WP_003807194.1;gbkey=CDS;product=GDP-mannose-dependent alpha-mannosyltransferase;protein_id=WP_003807194.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3266043 3266294 . - . ID=gene3111;Name=RD04_RS15560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15560;old_locus_tag=RD04_15525 NZ_CP010961.1 Protein Homology CDS 3266043 3266294 . - 0 ID=cds3053;Parent=gene3111;Dbxref=Genbank:WP_003818441.1;Name=WP_003818441.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003818441.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3266405 3267568 . - . ID=gene3112;Name=RD04_RS15565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15565;old_locus_tag=RD04_15530 NZ_CP010961.1 Protein Homology CDS 3266405 3267568 . - 0 ID=cds3054;Parent=gene3112;Dbxref=Genbank:WP_010925730.1;Name=WP_010925730.1;Note=catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase;gbkey=CDS;product=S-adenosylmethionine synthase;protein_id=WP_010925730.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3267852 3268706 . + . ID=gene3113;Name=RD04_RS15570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15570;old_locus_tag=RD04_15535 NZ_CP010961.1 Protein Homology CDS 3267852 3268706 . + 0 ID=cds3055;Parent=gene3113;Dbxref=Genbank:WP_010931279.1;Name=WP_010931279.1;Note=Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA;gbkey=CDS;product=lipid A biosynthesis lauroyl acyltransferase;protein_id=WP_010931279.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3268703 3269593 . + . ID=gene3114;Name=RD04_RS15575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15575;old_locus_tag=RD04_15540 NZ_CP010961.1 Protein Homology CDS 3268703 3269593 . + 0 ID=cds3056;Parent=gene3114;Dbxref=Genbank:WP_010931280.1;Name=WP_010931280.1;gbkey=CDS;product=acyltransferase;protein_id=WP_010931280.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3269636 3270547 . + . ID=gene3115;Name=RD04_RS15580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15580;old_locus_tag=RD04_15545 NZ_CP010961.1 Protein Homology CDS 3269636 3270547 . + 0 ID=cds3057;Parent=gene3115;Dbxref=Genbank:WP_003807183.1;Name=WP_003807183.1;gbkey=CDS;product=diaminopimelate epimerase;protein_id=WP_003807183.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3270574 3271266 . + . ID=gene3116;Name=RD04_RS15585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15585;old_locus_tag=RD04_15550 NZ_CP010961.1 Protein Homology CDS 3270574 3271266 . + 0 ID=cds3058;Parent=gene3116;Dbxref=Genbank:WP_010931281.1;Name=WP_010931281.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931281.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3271281 3272261 . + . ID=gene3117;Name=RD04_RS15590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15590;old_locus_tag=RD04_15555 NZ_CP010961.1 Protein Homology CDS 3271281 3272261 . + 0 ID=cds3059;Parent=gene3117;Dbxref=Genbank:WP_010931282.1;Name=WP_010931282.1;gbkey=CDS;product=tyrosine recombinase XerC;protein_id=WP_010931282.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3272274 3274415 . - . ID=gene3118;Name=RD04_RS15595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15595;old_locus_tag=RD04_15560 NZ_CP010961.1 Protein Homology CDS 3272274 3274415 . - 0 ID=cds3060;Parent=gene3118;Dbxref=Genbank:WP_010931283.1;Name=WP_010931283.1;gbkey=CDS;product=outer membrane protein;protein_id=WP_010931283.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3274464 3275432 . - . ID=gene3119;Name=RD04_RS15600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15600;old_locus_tag=RD04_15565 NZ_CP010961.1 Protein Homology CDS 3274464 3275432 . - 0 ID=cds3061;Parent=gene3119;Dbxref=Genbank:WP_003818434.1;Name=WP_003818434.1;gbkey=CDS;product=putative membrane protein;protein_id=WP_003818434.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3275423 3276091 . - . ID=gene3120;Name=RD04_RS15605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15605;old_locus_tag=RD04_15570 NZ_CP010961.1 Protein Homology CDS 3275423 3276091 . - 0 ID=cds3062;Parent=gene3120;Dbxref=Genbank:WP_019247300.1;Name=WP_019247300.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247300.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3276052 3276987 . - . ID=gene3121;Name=RD04_RS15610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15610;old_locus_tag=RD04_15575 NZ_CP010961.1 Protein Homology CDS 3276052 3276987 . - 0 ID=cds3063;Parent=gene3121;Dbxref=Genbank:WP_010931286.1;Name=WP_010931286.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931286.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3276984 3277880 . - . ID=gene3122;Name=RD04_RS15615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15615;old_locus_tag=RD04_15580 NZ_CP010961.1 Protein Homology CDS 3276984 3277880 . - 0 ID=cds3064;Parent=gene3122;Dbxref=Genbank:WP_010931287.1;Name=WP_010931287.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931287.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3277877 3278599 . - . ID=gene3123;Name=RD04_RS15620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15620;old_locus_tag=RD04_15585 NZ_CP010961.1 Protein Homology CDS 3277877 3278599 . - 0 ID=cds3065;Parent=gene3123;Dbxref=Genbank:WP_010931288.1;Name=WP_010931288.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931288.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3278590 3278790 . - . ID=gene3124;Name=RD04_RS15625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15625;old_locus_tag=RD04_15590 NZ_CP010961.1 Protein Homology CDS 3278590 3278790 . - 0 ID=cds3066;Parent=gene3124;Dbxref=Genbank:WP_033446333.1;Name=WP_033446333.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446333.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3278928 3279431 . + . ID=gene3125;Name=RD04_RS15630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15630;old_locus_tag=RD04_15595 NZ_CP010961.1 Protein Homology CDS 3278928 3279431 . + 0 ID=cds3067;Parent=gene3125;Dbxref=Genbank:WP_003807166.1;Name=WP_003807166.1;gbkey=CDS;product=transcriptional repressor;protein_id=WP_003807166.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3279708 3280823 . + . ID=gene3126;Name=RD04_RS15635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15635;old_locus_tag=RD04_15600 NZ_CP010961.1 Protein Homology CDS 3279708 3280823 . + 0 ID=cds3068;Parent=gene3126;Dbxref=Genbank:WP_010931290.1;Name=WP_010931290.1;gbkey=CDS;product=cobalamin biosynthesis protein CobW;protein_id=WP_010931290.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3280966 3281430 . + . ID=gene3127;Name=RD04_RS15640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15640;old_locus_tag=RD04_15605 NZ_CP010961.1 Protein Homology CDS 3280966 3281430 . + 0 ID=cds3069;Parent=gene3127;Dbxref=Genbank:WP_003807164.1;Name=WP_003807164.1;gbkey=CDS;product=RNA polymerase-binding protein DksA;protein_id=WP_003807164.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3281578 3282117 . + . ID=gene3128;Name=RD04_RS15645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15645;old_locus_tag=RD04_15610 NZ_CP010961.1 Protein Homology CDS 3281578 3282117 . + 0 ID=cds3070;Parent=gene3128;Dbxref=Genbank:WP_010931291.1;Name=WP_010931291.1;Note=heat shock protein involved in degradation of misfolded proteins;gbkey=CDS;product=HslU--HslV peptidase proteolytic subunit;protein_id=WP_010931291.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3282139 3283473 . + . ID=gene3129;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=RD04_RS15650;old_locus_tag=RD04_15615 NZ_CP010961.1 Protein Homology CDS 3282139 3283473 . + 0 ID=cds3071;Parent=gene3129;Dbxref=Genbank:WP_003807162.1;Name=WP_003807162.1;Note=heat shock protein involved in degradation of misfolded proteins;gbkey=CDS;gene=hslU;product=HslU--HslV peptidase ATPase subunit;protein_id=WP_003807162.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3283487 3283792 . - . ID=gene3130;Name=RD04_RS15655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15655;old_locus_tag=RD04_15620 NZ_CP010961.1 Protein Homology CDS 3283487 3283792 . - 0 ID=cds3072;Parent=gene3130;Dbxref=Genbank:WP_003807161.1;Name=WP_003807161.1;gbkey=CDS;product=RND transporter;protein_id=WP_003807161.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3284217 3284798 . + . ID=gene3131;Name=RD04_RS15660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15660;old_locus_tag=RD04_15625 NZ_CP010961.1 Protein Homology CDS 3284217 3284798 . + 0 ID=cds3073;Parent=gene3131;Dbxref=Genbank:WP_023853416.1;Name=WP_023853416.1;gbkey=CDS;product=ATP--cob(I)alamin adenosyltransferase;protein_id=WP_023853416.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3284880 3285830 . + . ID=gene3132;Name=RD04_RS15665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15665;old_locus_tag=RD04_15630 NZ_CP010961.1 Protein Homology CDS 3284880 3285830 . + 0 ID=cds3074;Parent=gene3132;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3286143 3287621 . + . ID=gene3133;Name=RD04_RS15670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15670;old_locus_tag=RD04_15635 NZ_CP010961.1 Protein Homology CDS 3286143 3287621 . + 0 ID=cds3075;Parent=gene3133;Dbxref=Genbank:WP_029443788.1;Name=WP_029443788.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_029443788.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3287628 3288737 . - . ID=gene3134;Name=RD04_RS15675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15675;old_locus_tag=RD04_15640 NZ_CP010961.1 Protein Homology CDS 3287628 3288737 . - 0 ID=cds3076;Parent=gene3134;Dbxref=Genbank:WP_010931293.1;Name=WP_010931293.1;gbkey=CDS;product=molybdenum import ATP-binding protein ModC;protein_id=WP_010931293.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3288749 3289429 . - . ID=gene3135;Name=RD04_RS15680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15680;old_locus_tag=RD04_15645 NZ_CP010961.1 Protein Homology CDS 3288749 3289429 . - 0 ID=cds3077;Parent=gene3135;Dbxref=Genbank:WP_003808339.1;Name=WP_003808339.1;gbkey=CDS;product=molybdenum ABC transporter permease subunit;protein_id=WP_003808339.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3289451 3290206 . - . ID=gene3136;Name=RD04_RS15685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15685;old_locus_tag=RD04_15650 NZ_CP010961.1 Protein Homology CDS 3289451 3290206 . - 0 ID=cds3078;Parent=gene3136;Dbxref=Genbank:WP_003808340.1;Name=WP_003808340.1;gbkey=CDS;product=molybdate ABC transporter substrate-binding protein;protein_id=WP_003808340.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3290342 3291244 . - . ID=gene3137;Name=RD04_RS15690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15690;old_locus_tag=RD04_15655 NZ_CP010961.1 Protein Homology CDS 3290342 3291244 . - 0 ID=cds3079;Parent=gene3137;Dbxref=Genbank:WP_019247961.1;Name=WP_019247961.1;gbkey=CDS;product=hydrolase;protein_id=WP_019247961.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3291314 3291895 . + . ID=gene3138;Name=RD04_RS15695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15695;old_locus_tag=RD04_15660 NZ_CP010961.1 Protein Homology CDS 3291314 3291895 . + 0 ID=cds3080;Parent=gene3138;Dbxref=Genbank:WP_010931294.1;Name=WP_010931294.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931294.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3291988 3292110 . - . ID=gene3139;Name=RD04_RS15700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15700;old_locus_tag=RD04_15665 NZ_CP010961.1 Protein Homology CDS 3291988 3292110 . - 0 ID=cds3081;Parent=gene3139;Dbxref=Genbank:WP_010931295.1;Name=WP_010931295.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931295.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3292156 3292455 . - . ID=gene3140;Name=RD04_RS15705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15705;old_locus_tag=RD04_15670 NZ_CP010961.1 Protein Homology CDS 3292156 3292455 . - 0 ID=cds3082;Parent=gene3140;Dbxref=Genbank:WP_004566249.1;Name=WP_004566249.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004566249.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3292607 3293086 . - . ID=gene3141;Name=RD04_RS15710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15710;old_locus_tag=RD04_15675 NZ_CP010961.1 Protein Homology CDS 3292607 3293086 . - 0 ID=cds3083;Parent=gene3141;Dbxref=Genbank:WP_010931296.1;Name=WP_010931296.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931296.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3293102 3293467 . - . ID=gene3142;Name=RD04_RS15715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15715;old_locus_tag=RD04_15680 NZ_CP010961.1 Protein Homology CDS 3293102 3293467 . - 0 ID=cds3084;Parent=gene3142;Dbxref=Genbank:WP_019247962.1;Name=WP_019247962.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247962.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3293363 3295224 . - . ID=gene3143;Name=RD04_RS15720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15720;old_locus_tag=RD04_15685;partial=true;pseudo=true;start_range=.,3293363 NZ_CP010961.1 Protein Homology CDS 3293363 3295224 . - 0 ID=cds3085;Parent=gene3143;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=TonB-dependent receptor;pseudo=true;start_range=.,3293363;transl_table=11 NZ_CP010961.1 RefSeq gene 3295239 3295667 . - . ID=gene3144;Name=RD04_RS15725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15725;old_locus_tag=RD04_15690 NZ_CP010961.1 Protein Homology CDS 3295239 3295667 . - 0 ID=cds3086;Parent=gene3144;Dbxref=Genbank:WP_010931297.1;Name=WP_010931297.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931297.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3295758 3296660 . - . ID=gene3145;Name=RD04_RS15730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15730;old_locus_tag=RD04_15695 NZ_CP010961.1 GeneMarkS+ CDS 3295758 3296660 . - 0 ID=cds3087;Parent=gene3145;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3296805 3297161 . - . ID=gene3146;Name=RD04_RS15735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15735;old_locus_tag=RD04_15700;partial=true;pseudo=true;start_range=.,3296805 NZ_CP010961.1 Protein Homology CDS 3296805 3297161 . - 0 ID=cds3088;Parent=gene3146;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=lysine transporter LysE;pseudo=true;start_range=.,3296805;transl_table=11 NZ_CP010961.1 RefSeq gene 3297236 3298009 . - . ID=gene3147;Name=RD04_RS15740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15740;old_locus_tag=RD04_15705 NZ_CP010961.1 Protein Homology CDS 3297236 3298009 . - 0 ID=cds3089;Parent=gene3147;Dbxref=Genbank:WP_003814148.1;Name=WP_003814148.1;gbkey=CDS;product=molybdate ABC transporter substrate-binding protein;protein_id=WP_003814148.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3298142 3299152 . - . ID=gene3148;Name=RD04_RS15745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15745;old_locus_tag=RD04_15710 NZ_CP010961.1 Protein Homology CDS 3298142 3299152 . - 0 ID=cds3090;Parent=gene3148;Dbxref=Genbank:WP_003814146.1;Name=WP_003814146.1;gbkey=CDS;product=MFS transporter;protein_id=WP_003814146.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3299304 3300959 . - . ID=gene3149;Name=RD04_RS15750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15750;old_locus_tag=RD04_15715 NZ_CP010961.1 Protein Homology CDS 3299304 3300959 . - 0 ID=cds3091;Parent=gene3149;Dbxref=Genbank:WP_010931298.1;Name=WP_010931298.1;gbkey=CDS;product=gamma-glutamyltranspeptidase;protein_id=WP_010931298.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3301014 3301355 . - . ID=gene3150;Name=RD04_RS15755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15755;old_locus_tag=RD04_15720 NZ_CP010961.1 Protein Homology CDS 3301014 3301355 . - 0 ID=cds3092;Parent=gene3150;Dbxref=Genbank:WP_003814142.1;Name=WP_003814142.1;gbkey=CDS;product=cupin;protein_id=WP_003814142.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3301369 3302808 . - . ID=gene3151;Name=RD04_RS15760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15760;old_locus_tag=RD04_15725 NZ_CP010961.1 Protein Homology CDS 3301369 3302808 . - 0 ID=cds3093;Parent=gene3151;Dbxref=Genbank:WP_010931299.1;Name=WP_010931299.1;gbkey=CDS;product=amine oxidase;protein_id=WP_010931299.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3302941 3303756 . - . ID=gene3152;Name=RD04_RS15765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15765;old_locus_tag=RD04_15730 NZ_CP010961.1 Protein Homology CDS 3302941 3303756 . - 0 ID=cds3094;Parent=gene3152;Dbxref=Genbank:WP_003814139.1;Name=WP_003814139.1;gbkey=CDS;product=MerR family transcriptional regulator;protein_id=WP_003814139.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3303950 3304900 . + . ID=gene3153;Name=RD04_RS15770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15770;old_locus_tag=RD04_15735 NZ_CP010961.1 Protein Homology CDS 3303950 3304900 . + 0 ID=cds3095;Parent=gene3153;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3304897 3306071 . - . ID=gene3154;Name=RD04_RS15775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15775;old_locus_tag=RD04_15740;pseudo=true NZ_CP010961.1 Protein Homology CDS 3304897 3306071 . - 0 ID=cds3096;Parent=gene3154;Note=frameshifted;gbkey=CDS;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3306294 3307235 . + . ID=gene3155;Name=RD04_RS15780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15780;old_locus_tag=RD04_15745 NZ_CP010961.1 Protein Homology CDS 3306294 3307235 . + 0 ID=cds3097;Parent=gene3155;Dbxref=Genbank:WP_019247274.1;Name=WP_019247274.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247274.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3307462 3308202 . + . ID=gene3156;Name=RD04_RS15785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15785;old_locus_tag=RD04_15750 NZ_CP010961.1 Protein Homology CDS 3307462 3308202 . + 0 ID=cds3098;Parent=gene3156;Dbxref=Genbank:WP_014905961.1;Name=WP_014905961.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_014905961.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3308288 3309190 . - . ID=gene3157;Name=RD04_RS15790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15790;old_locus_tag=RD04_15755 NZ_CP010961.1 GeneMarkS+ CDS 3308288 3309190 . - 0 ID=cds3099;Parent=gene3157;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3309625 3310629 . + . ID=gene3158;Name=RD04_RS15795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15795;old_locus_tag=RD04_15760;pseudo=true NZ_CP010961.1 Protein Homology CDS 3309625 3310629 . + 0 ID=cds3100;Parent=gene3158;Note=internal stop;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3310680 3312251 . - . ID=gene3159;Name=RD04_RS15800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15800;old_locus_tag=RD04_15765 NZ_CP010961.1 Protein Homology CDS 3310680 3312251 . - 0 ID=cds3101;Parent=gene3159;Dbxref=Genbank:WP_014905963.1;Name=WP_014905963.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_014905963.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3312584 3314437 . + . ID=gene3160;Name=RD04_RS15805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15805;old_locus_tag=RD04_15770 NZ_CP010961.1 Protein Homology CDS 3312584 3314437 . + 0 ID=cds3102;Parent=gene3160;Dbxref=Genbank:WP_019247179.1;Name=WP_019247179.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247179.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3314482 3317046 . + . ID=gene3161;Name=RD04_RS15810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15810;old_locus_tag=RD04_15775 NZ_CP010961.1 Protein Homology CDS 3314482 3317046 . + 0 ID=cds3103;Parent=gene3161;Dbxref=Genbank:WP_019247178.1;Name=WP_019247178.1;gbkey=CDS;product=autotransporter;protein_id=WP_019247178.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3318401 3319120 . + . ID=gene3162;Name=RD04_RS15815;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS15815;old_locus_tag=RD04_15780;partial=true;pseudo=true;start_range=.,3318401 NZ_CP010961.1 Protein Homology CDS 3318401 3319120 . + 0 ID=cds3104;Parent=gene3162;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=integrase;pseudo=true;start_range=.,3318401;transl_table=11 NZ_CP010961.1 RefSeq gene 3319199 3319483 . - . ID=gene3163;Name=RD04_RS15820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15820;old_locus_tag=RD04_15785 NZ_CP010961.1 GeneMarkS+ CDS 3319199 3319483 . - 0 ID=cds3105;Parent=gene3163;Dbxref=Genbank:WP_029443992.1;Name=WP_029443992.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_029443992.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3319565 3320476 . - . ID=gene3164;Name=RD04_RS15825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15825;old_locus_tag=RD04_15790 NZ_CP010961.1 Protein Homology CDS 3319565 3320476 . - 0 ID=cds3106;Parent=gene3164;Dbxref=Genbank:WP_019248455.1;Name=WP_019248455.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248455.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3320546 3320791 . + . ID=gene3165;Name=RD04_RS15830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15830;old_locus_tag=RD04_15795 NZ_CP010961.1 Protein Homology CDS 3320546 3320791 . + 0 ID=cds3107;Parent=gene3165;Dbxref=Genbank:WP_019247739.1;Name=WP_019247739.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247739.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3321020 3321277 . - . ID=gene3166;Name=RD04_RS15835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15835;old_locus_tag=RD04_15800 NZ_CP010961.1 GeneMarkS+ CDS 3321020 3321277 . - 0 ID=cds3108;Parent=gene3166;Dbxref=Genbank:WP_019247740.1;Name=WP_019247740.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247740.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3321792 3322694 . - . ID=gene3167;Name=RD04_RS15840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15840;old_locus_tag=RD04_15805 NZ_CP010961.1 GeneMarkS+ CDS 3321792 3322694 . - 0 ID=cds3109;Parent=gene3167;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3322926 3324137 . - . ID=gene3168;Name=RD04_RS15845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15845;old_locus_tag=RD04_15810 NZ_CP010961.1 Protein Homology CDS 3322926 3324137 . - 0 ID=cds3110;Parent=gene3168;Dbxref=Genbank:WP_024001095.1;Name=WP_024001095.1;gbkey=CDS;product=ATPase AAA;protein_id=WP_024001095.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3324153 3327104 . - . ID=gene3169;Name=RD04_RS15850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15850;old_locus_tag=RD04_15815 NZ_CP010961.1 Protein Homology CDS 3324153 3327104 . - 0 ID=cds3111;Parent=gene3169;Dbxref=Genbank:WP_010931302.1;Name=WP_010931302.1;gbkey=CDS;product=restriction endonuclease subunit M;protein_id=WP_010931302.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3327106 3329862 . - . ID=gene3170;Name=RD04_RS15855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15855;old_locus_tag=RD04_15820 NZ_CP010961.1 Protein Homology CDS 3327106 3329862 . - 0 ID=cds3112;Parent=gene3170;Dbxref=Genbank:WP_019247951.1;Name=WP_019247951.1;gbkey=CDS;product=restriction endonuclease;protein_id=WP_019247951.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3330373 3331419 . - . ID=gene3171;Name=RD04_RS15860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15860;old_locus_tag=RD04_15825 NZ_CP010961.1 Protein Homology CDS 3330373 3331419 . - 0 ID=cds3113;Parent=gene3171;Dbxref=Genbank:WP_010931304.1;Name=WP_010931304.1;gbkey=CDS;product=cell division protein Fic;protein_id=WP_010931304.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3331761 3332888 . - . ID=gene3172;Name=RD04_RS15865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15865;old_locus_tag=RD04_15830 NZ_CP010961.1 Protein Homology CDS 3331761 3332888 . - 0 ID=cds3114;Parent=gene3172;Dbxref=Genbank:WP_010931305.1;Name=WP_010931305.1;gbkey=CDS;product=integrase;protein_id=WP_010931305.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3333168 3334259 . - . ID=gene3173;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=RD04_RS15870;old_locus_tag=RD04_15835 NZ_CP010961.1 Protein Homology CDS 3333168 3334259 . - 0 ID=cds3115;Parent=gene3173;Dbxref=Genbank:WP_010931306.1;Name=WP_010931306.1;Note=EngD%3B translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3)%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1;gbkey=CDS;gene=ychF;product=GTP-binding protein YchF;protein_id=WP_010931306.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3334332 3335114 . - . ID=gene3174;Name=RD04_RS15875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15875;old_locus_tag=RD04_15840 NZ_CP010961.1 Protein Homology CDS 3334332 3335114 . - 0 ID=cds3116;Parent=gene3174;Dbxref=Genbank:WP_010931307.1;Name=WP_010931307.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931307.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3335111 3335707 . - . ID=gene3175;Name=RD04_RS15880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15880;old_locus_tag=RD04_15845 NZ_CP010961.1 Protein Homology CDS 3335111 3335707 . - 0 ID=cds3117;Parent=gene3175;Dbxref=Genbank:WP_010931308.1;Name=WP_010931308.1;gbkey=CDS;product=aminoacyl-tRNA hydrolase;protein_id=WP_010931308.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3335836 3336450 . - . ID=gene3176;Name=RD04_RS15885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15885;old_locus_tag=RD04_15850 NZ_CP010961.1 Protein Homology CDS 3335836 3336450 . - 0 ID=cds3118;Parent=gene3176;Dbxref=Genbank:WP_029443719.1;Name=WP_029443719.1;gbkey=CDS;product=50S ribosomal protein L25/general stress protein Ctc;protein_id=WP_029443719.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3336573 3337523 . - . ID=gene3177;Name=RD04_RS15890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15890;old_locus_tag=RD04_15855 NZ_CP010961.1 Protein Homology CDS 3336573 3337523 . - 0 ID=cds3119;Parent=gene3177;Dbxref=Genbank:WP_010931310.1;Name=WP_010931310.1;Note=catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP;gbkey=CDS;product=ribose-phosphate pyrophosphokinase;protein_id=WP_010931310.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3337654 3337730 . - . ID=gene3178;Name=RD04_RS15895;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS15895;old_locus_tag=RD04_15860 NZ_CP010961.1 tRNAscan-SE tRNA 3337654 3337730 . - . ID=rna58;Parent=gene3178;anticodon=(pos:complement(3337694..3337696));gbkey=tRNA;product=tRNA-Gln NZ_CP010961.1 tRNAscan-SE exon 3337654 3337730 . - . ID=id64;Parent=rna58;anticodon=(pos:complement(3337694..3337696));gbkey=tRNA;product=tRNA-Gln NZ_CP010961.1 RefSeq gene 3337732 3338631 . - . ID=gene3179;Name=ipk;gbkey=Gene;gene=ipk;gene_biotype=protein_coding;locus_tag=RD04_RS15900;old_locus_tag=RD04_15865 NZ_CP010961.1 Protein Homology CDS 3337732 3338631 . - 0 ID=cds3120;Parent=gene3179;Dbxref=Genbank:WP_010931311.1;Name=WP_010931311.1;Note=An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis;gbkey=CDS;gene=ipk;product=4-diphosphocytidyl-2C-methyl-D-erythritol kinase;protein_id=WP_010931311.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3338680 3339279 . - . ID=gene3180;Name=RD04_RS15905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15905;old_locus_tag=RD04_15870 NZ_CP010961.1 Protein Homology CDS 3338680 3339279 . - 0 ID=cds3121;Parent=gene3180;Dbxref=Genbank:WP_003818921.1;Name=WP_003818921.1;gbkey=CDS;product=outer membrane lipoprotein LolB;protein_id=WP_003818921.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3339276 3341162 . - . ID=gene3181;Name=RD04_RS15910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15910;old_locus_tag=RD04_15875 NZ_CP010961.1 Protein Homology CDS 3339276 3341162 . - 0 ID=cds3122;Parent=gene3181;Dbxref=Genbank:WP_050818131.1;Name=WP_050818131.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_050818131.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3341161 3341988 . + . ID=gene3182;Name=RD04_RS15915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15915;old_locus_tag=RD04_15880 NZ_CP010961.1 Protein Homology CDS 3341161 3341988 . + 0 ID=cds3123;Parent=gene3182;Dbxref=Genbank:WP_010925978.1;Name=WP_010925978.1;gbkey=CDS;product=formamidopyrimidine-DNA glycosylase;protein_id=WP_010925978.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3342079 3343032 . + . ID=gene3183;Name=RD04_RS15920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15920;old_locus_tag=RD04_15885 NZ_CP010961.1 Protein Homology CDS 3342079 3343032 . + 0 ID=cds3124;Parent=gene3183;Dbxref=Genbank:WP_010931313.1;Name=WP_010931313.1;gbkey=CDS;product=cyclase;protein_id=WP_010931313.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3343134 3344813 . + . ID=gene3184;Name=RD04_RS15925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15925;old_locus_tag=RD04_15890 NZ_CP010961.1 Protein Homology CDS 3343134 3344813 . + 0 ID=cds3125;Parent=gene3184;Dbxref=Genbank:WP_003808489.1;Name=WP_003808489.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_003808489.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3344825 3345034 . + . ID=gene3185;Name=RD04_RS15930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15930;old_locus_tag=RD04_15895 NZ_CP010961.1 Protein Homology CDS 3344825 3345034 . + 0 ID=cds3126;Parent=gene3185;Dbxref=Genbank:WP_003808487.1;Name=WP_003808487.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003808487.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3345044 3345952 . - . ID=gene3186;Name=RD04_RS15935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15935;old_locus_tag=RD04_15900 NZ_CP010961.1 Protein Homology CDS 3345044 3345952 . - 0 ID=cds3127;Parent=gene3186;Dbxref=Genbank:WP_010931314.1;Name=WP_010931314.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931314.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3346135 3347433 . + . ID=gene3187;Name=RD04_RS15940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15940;old_locus_tag=RD04_15905 NZ_CP010961.1 Protein Homology CDS 3346135 3347433 . + 0 ID=cds3128;Parent=gene3187;Dbxref=Genbank:WP_003818930.1;Name=WP_003818930.1;Note=An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine;gbkey=CDS;product=homogentisate 1%2C2-dioxygenase;protein_id=WP_003818930.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3347542 3348855 . + . ID=gene3188;Name=RD04_RS15945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15945;old_locus_tag=RD04_15910 NZ_CP010961.1 Protein Homology CDS 3347542 3348855 . + 0 ID=cds3129;Parent=gene3188;Dbxref=Genbank:WP_003818932.1;Name=WP_003818932.1;gbkey=CDS;product=fumarylacetoacetase;protein_id=WP_003818932.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3348981 3350876 . - . ID=gene3189;Name=RD04_RS15950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15950;old_locus_tag=RD04_15915 NZ_CP010961.1 Protein Homology CDS 3348981 3350876 . - 0 ID=cds3130;Parent=gene3189;Dbxref=Genbank:WP_023853096.1;Name=WP_023853096.1;gbkey=CDS;product=arylsulfatase;protein_id=WP_023853096.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3351022 3352344 . - . ID=gene3190;Name=RD04_RS15955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15955;old_locus_tag=RD04_15920 NZ_CP010961.1 Protein Homology CDS 3351022 3352344 . - 0 ID=cds3131;Parent=gene3190;Dbxref=Genbank:WP_010931316.1;Name=WP_010931316.1;gbkey=CDS;product=two-component sensor histidine kinase;protein_id=WP_010931316.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3352341 3353051 . - . ID=gene3191;Name=RD04_RS15960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15960;old_locus_tag=RD04_15925 NZ_CP010961.1 Protein Homology CDS 3352341 3353051 . - 0 ID=cds3132;Parent=gene3191;Dbxref=Genbank:WP_003818936.1;Name=WP_003818936.1;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_003818936.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3353069 3354484 . - . ID=gene3192;Name=RD04_RS15965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15965;old_locus_tag=RD04_15930 NZ_CP010961.1 Protein Homology CDS 3353069 3354484 . - 0 ID=cds3133;Parent=gene3192;Dbxref=Genbank:WP_010931317.1;Name=WP_010931317.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010931317.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3354576 3355187 . - . ID=gene3193;Name=RD04_RS15970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15970;old_locus_tag=RD04_15935 NZ_CP010961.1 Protein Homology CDS 3354576 3355187 . - 0 ID=cds3134;Parent=gene3193;Dbxref=Genbank:WP_003808465.1;Name=WP_003808465.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003808465.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3355466 3356848 . + . ID=gene3194;Name=RD04_RS15975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15975;old_locus_tag=RD04_15940 NZ_CP010961.1 Protein Homology CDS 3355466 3356848 . + 0 ID=cds3135;Parent=gene3194;Dbxref=Genbank:WP_010931319.1;Name=WP_010931319.1;Note=catalyzes the interconversion of alpha-D-mannose 1-phosphate to alpha-D-mannose 6-phosphate and alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate;gbkey=CDS;product=phosphoglucomutase;protein_id=WP_010931319.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3356855 3358420 . + . ID=gene3195;Name=RD04_RS15980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15980;old_locus_tag=RD04_15945 NZ_CP010961.1 Protein Homology CDS 3356855 3358420 . + 0 ID=cds3136;Parent=gene3195;Dbxref=Genbank:WP_003808462.1;Name=WP_003808462.1;gbkey=CDS;product=glucose-6-phosphate isomerase;protein_id=WP_003808462.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3358428 3359558 . - . ID=gene3196;Name=RD04_RS15985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15985;old_locus_tag=RD04_15950 NZ_CP010961.1 Protein Homology CDS 3358428 3359558 . - 0 ID=cds3137;Parent=gene3196;Dbxref=Genbank:WP_010931320.1;Name=WP_010931320.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_010931320.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3359555 3360709 . - . ID=gene3197;Name=RD04_RS15990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15990;old_locus_tag=RD04_15955 NZ_CP010961.1 Protein Homology CDS 3359555 3360709 . - 0 ID=cds3138;Parent=gene3197;Dbxref=Genbank:WP_010931321.1;Name=WP_010931321.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_010931321.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3360706 3361827 . - . ID=gene3198;Name=RD04_RS15995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS15995;old_locus_tag=RD04_15960 NZ_CP010961.1 Protein Homology CDS 3360706 3361827 . - 0 ID=cds3139;Parent=gene3198;Dbxref=Genbank:WP_010931322.1;Name=WP_010931322.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_010931322.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3361824 3363749 . - . ID=gene3199;Name=RD04_RS16000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16000;old_locus_tag=RD04_15965 NZ_CP010961.1 Protein Homology CDS 3361824 3363749 . - 0 ID=cds3140;Parent=gene3199;Dbxref=Genbank:WP_010931323.1;Name=WP_010931323.1;gbkey=CDS;product=asparagine synthetase B;protein_id=WP_010931323.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3363796 3364932 . - . ID=gene3200;Name=RD04_RS16005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16005;old_locus_tag=RD04_15970 NZ_CP010961.1 Protein Homology CDS 3363796 3364932 . - 0 ID=cds3141;Parent=gene3200;Dbxref=Genbank:WP_010931324.1;Name=WP_010931324.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_010931324.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3364933 3366303 . - . ID=gene3201;Name=RD04_RS16010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16010;old_locus_tag=RD04_15975 NZ_CP010961.1 Protein Homology CDS 3364933 3366303 . - 0 ID=cds3142;Parent=gene3201;Dbxref=Genbank:WP_010931325.1;Name=WP_010931325.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931325.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3366305 3367330 . - . ID=gene3202;Name=RD04_RS16015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16015;old_locus_tag=RD04_15980 NZ_CP010961.1 Protein Homology CDS 3366305 3367330 . - 0 ID=cds3143;Parent=gene3202;Dbxref=Genbank:WP_010930472.1;Name=WP_010930472.1;gbkey=CDS;product=capsular polysaccharide biosynthesis protein;protein_id=WP_010930472.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3367342 3368616 . - . ID=gene3203;Name=RD04_RS16020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16020;old_locus_tag=RD04_15985 NZ_CP010961.1 Protein Homology CDS 3367342 3368616 . - 0 ID=cds3144;Parent=gene3203;Dbxref=Genbank:WP_010931326.1;Name=WP_010931326.1;gbkey=CDS;product=nucleotide sugar dehydrogenase;protein_id=WP_010931326.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3368722 3369825 . - . ID=gene3204;Name=RD04_RS16025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16025;old_locus_tag=RD04_15990 NZ_CP010961.1 Protein Homology CDS 3368722 3369825 . - 0 ID=cds3145;Parent=gene3204;Dbxref=Genbank:WP_003808448.1;Name=WP_003808448.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_003808448.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3370554 3371222 . - . ID=gene3205;Name=RD04_RS16030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16030;old_locus_tag=RD04_15995 NZ_CP010961.1 Protein Homology CDS 3370554 3371222 . - 0 ID=cds3146;Parent=gene3205;Dbxref=Genbank:WP_010931327.1;Name=WP_010931327.1;gbkey=CDS;product=2-nonaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase;protein_id=WP_010931327.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3371352 3371783 . + . ID=gene3206;Name=RD04_RS16035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16035;old_locus_tag=RD04_16000 NZ_CP010961.1 Protein Homology CDS 3371352 3371783 . + 0 ID=cds3147;Parent=gene3206;Dbxref=Genbank:WP_023994724.1;Name=WP_023994724.1;gbkey=CDS;product=OsmC-like protein;protein_id=WP_023994724.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3371836 3372807 . + . ID=gene3207;Name=thyA;gbkey=Gene;gene=thyA;gene_biotype=protein_coding;locus_tag=RD04_RS16040;old_locus_tag=RD04_16005 NZ_CP010961.1 Protein Homology CDS 3371836 3372807 . + 0 ID=cds3148;Parent=gene3207;Dbxref=Genbank:WP_010931328.1;Name=WP_010931328.1;Note=ThyA%3B catalyzes formation of dTMP and 7%2C8-dihydrofolate from 5%2C10-methylenetetrahydrofolate and dUMP%3B involved in deoxyribonucleotide biosynthesis%3B there are 2 copies in some Bacilli%2C one of which appears to be phage-derived;gbkey=CDS;gene=thyA;product=thymidylate synthase;protein_id=WP_010931328.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3372838 3373335 . + . ID=gene3208;Name=RD04_RS16045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16045;old_locus_tag=RD04_16010 NZ_CP010961.1 Protein Homology CDS 3372838 3373335 . + 0 ID=cds3149;Parent=gene3208;Dbxref=Genbank:WP_003816386.1;Name=WP_003816386.1;gbkey=CDS;product=dihydrofolate reductase;protein_id=WP_003816386.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3373299 3374756 . - . ID=gene3209;Name=RD04_RS16050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16050;old_locus_tag=RD04_16015 NZ_CP010961.1 Protein Homology CDS 3373299 3374756 . - 0 ID=cds3150;Parent=gene3209;Dbxref=Genbank:WP_010931330.1;Name=WP_010931330.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010931330.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3374939 3376264 . + . ID=gene3210;Name=RD04_RS16055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16055;old_locus_tag=RD04_16020 NZ_CP010961.1 Protein Homology CDS 3374939 3376264 . + 0 ID=cds3151;Parent=gene3210;Dbxref=Genbank:WP_010931331.1;Name=WP_010931331.1;Note=catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate;gbkey=CDS;product=beta-alanine--pyruvate aminotransferase;protein_id=WP_010931331.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3376540 3377754 . + . ID=gene3211;Name=RD04_RS16060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16060;old_locus_tag=RD04_16025 NZ_CP010961.1 Protein Homology CDS 3376540 3377754 . + 0 ID=cds3152;Parent=gene3211;Dbxref=Genbank:WP_019247173.1;Name=WP_019247173.1;gbkey=CDS;product=methylmalonate-semialdehyde dehydrogenase (acylating);protein_id=WP_019247173.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3378042 3379607 . + . ID=gene3212;Name=RD04_RS16065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16065;old_locus_tag=RD04_16030 NZ_CP010961.1 Protein Homology CDS 3378042 3379607 . + 0 ID=cds3153;Parent=gene3212;Dbxref=Genbank:WP_010931332.1;Name=WP_010931332.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931332.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3379653 3380594 . + . ID=gene3213;Name=RD04_RS16070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16070;old_locus_tag=RD04_16035 NZ_CP010961.1 Protein Homology CDS 3379653 3380594 . + 0 ID=cds3154;Parent=gene3213;Dbxref=Genbank:WP_010931333.1;Name=WP_010931333.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931333.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3380597 3381484 . + . ID=gene3214;Name=RD04_RS16075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16075;old_locus_tag=RD04_16040 NZ_CP010961.1 Protein Homology CDS 3380597 3381484 . + 0 ID=cds3155;Parent=gene3214;Dbxref=Genbank:WP_010931334.1;Name=WP_010931334.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_010931334.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3381488 3383028 . + . ID=gene3215;Name=RD04_RS16080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16080;old_locus_tag=RD04_16045;pseudo=true NZ_CP010961.1 Protein Homology CDS 3381488 3383028 . + 0 ID=cds3156;Parent=gene3215;Note=with YejAEF is involved in resistance to microcin C%3B frameshifted;gbkey=CDS;product=microcin ABC transporter ATP-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3383072 3384547 . + . ID=gene3216;Name=RD04_RS16085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16085;old_locus_tag=RD04_16050 NZ_CP010961.1 Protein Homology CDS 3383072 3384547 . + 0 ID=cds3157;Parent=gene3216;Dbxref=Genbank:WP_010931335.1;Name=WP_010931335.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931335.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3384694 3385596 . + . ID=gene3217;Name=RD04_RS16090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16090;old_locus_tag=RD04_16055 NZ_CP010961.1 GeneMarkS+ CDS 3384694 3385596 . + 0 ID=cds3158;Parent=gene3217;Dbxref=Genbank:WP_062826650.1;Name=WP_062826650.1;gbkey=CDS;product=integrase;protein_id=WP_062826650.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3386001 3386645 . - . ID=gene3218;Name=RD04_RS16095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16095;old_locus_tag=RD04_16060 NZ_CP010961.1 Protein Homology CDS 3386001 3386645 . - 0 ID=cds3159;Parent=gene3218;Dbxref=Genbank:WP_010931336.1;Name=WP_010931336.1;gbkey=CDS;product=urease accessory protein UreG;protein_id=WP_010931336.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3386670 3387254 . - . ID=gene3219;Name=RD04_RS16100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16100;old_locus_tag=RD04_16065 NZ_CP010961.1 Protein Homology CDS 3386670 3387254 . - 0 ID=cds3160;Parent=gene3219;Dbxref=Genbank:WP_019247677.1;Name=WP_019247677.1;gbkey=CDS;product=urease accessory protein UreF;protein_id=WP_019247677.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3387355 3387972 . - . ID=gene3220;Name=ureE;gbkey=Gene;gene=ureE;gene_biotype=protein_coding;locus_tag=RD04_RS16105;old_locus_tag=RD04_16070 NZ_CP010961.1 Protein Homology CDS 3387355 3387972 . - 0 ID=cds3161;Parent=gene3220;Dbxref=Genbank:WP_014905506.1;Name=WP_014905506.1;Note=involved in the assembly of the urease metallocenter%3B possible nickel donor;gbkey=CDS;gene=ureE;product=urease accessory protein UreE;protein_id=WP_014905506.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3387975 3389690 . - . ID=gene3221;Name=ureC;gbkey=Gene;gene=ureC;gene_biotype=protein_coding;locus_tag=RD04_RS16110;old_locus_tag=RD04_16075 NZ_CP010961.1 Protein Homology CDS 3387975 3389690 . - 0 ID=cds3162;Parent=gene3221;Dbxref=Genbank:WP_010931337.1;Name=WP_010931337.1;Note=ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits;gbkey=CDS;gene=ureC;product=urease subunit alpha;protein_id=WP_010931337.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3389687 3389995 . - . ID=gene3222;Name=ureB;gbkey=Gene;gene=ureB;gene_biotype=protein_coding;locus_tag=RD04_RS16115;old_locus_tag=RD04_16080 NZ_CP010961.1 Protein Homology CDS 3389687 3389995 . - 0 ID=cds3163;Parent=gene3222;Dbxref=Genbank:WP_010931338.1;Name=WP_010931338.1;Note=ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta)%3B in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity%2C optimum growth%2C resistance to low-pH killing in-vitro and persistence in-vivo%2C while the other operon does not seem to be active;gbkey=CDS;gene=ureB;product=urease subunit beta;protein_id=WP_010931338.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3390012 3390629 . - . ID=gene3223;Name=RD04_RS16120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16120;old_locus_tag=RD04_16085 NZ_CP010961.1 Protein Homology CDS 3390012 3390629 . - 0 ID=cds3164;Parent=gene3223;Dbxref=Genbank:WP_003814828.1;Name=WP_003814828.1;gbkey=CDS;product=urease accessory protein;protein_id=WP_003814828.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3390674 3390976 . - . ID=gene3224;Name=ureA;gbkey=Gene;gene=ureA;gene_biotype=protein_coding;locus_tag=RD04_RS16125;old_locus_tag=RD04_16090 NZ_CP010961.1 Protein Homology CDS 3390674 3390976 . - 0 ID=cds3165;Parent=gene3224;Dbxref=Genbank:WP_010931340.1;Name=WP_010931340.1;Note=UreA%2C with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide%3B nickel metalloenzyme%3B accessory proteins UreD%2C UreE%2C UreF%2C and UreG are necessary for assembly of the metallocenter;gbkey=CDS;gene=ureA;product=urease subunit gamma;protein_id=WP_010931340.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3391077 3391931 . - . ID=gene3225;Name=RD04_RS16130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16130;old_locus_tag=RD04_16095 NZ_CP010961.1 Protein Homology CDS 3391077 3391931 . - 0 ID=cds3166;Parent=gene3225;Dbxref=Genbank:WP_003814832.1;Name=WP_003814832.1;gbkey=CDS;product=urease accessory protein UreD;protein_id=WP_003814832.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3392513 3392776 . + . ID=gene3226;Name=RD04_RS16135;end_range=3392776,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16135;old_locus_tag=RD04_16100;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3392513 3392776 . + 0 ID=cds3167;Parent=gene3226;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=3392776,.;gbkey=CDS;partial=true;product=Cu(I)-responsive transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3392802 3393141 . + . ID=gene3227;Name=RD04_RS16140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16140;old_locus_tag=RD04_16105;pseudo=true NZ_CP010961.1 Protein Homology CDS 3392802 3393141 . + 0 ID=cds3168;Parent=gene3227;Note=frameshifted;gbkey=CDS;product=2Fe-2S ferredoxin;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3393203 3393610 . - . ID=gene3228;Name=RD04_RS16145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16145;old_locus_tag=RD04_16110 NZ_CP010961.1 Protein Homology CDS 3393203 3393610 . - 0 ID=cds3169;Parent=gene3228;Dbxref=Genbank:WP_010929282.1;Name=WP_010929282.1;gbkey=CDS;product=aldehyde-activating protein;protein_id=WP_010929282.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3393783 3393873 . - . ID=gene3229;Name=RD04_RS16150;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS16150;old_locus_tag=RD04_16115 NZ_CP010961.1 tRNAscan-SE tRNA 3393783 3393873 . - . ID=rna59;Parent=gene3229;anticodon=(pos:complement(3393837..3393839));gbkey=tRNA;product=tRNA-Ser NZ_CP010961.1 tRNAscan-SE exon 3393783 3393873 . - . ID=id65;Parent=rna59;anticodon=(pos:complement(3393837..3393839));gbkey=tRNA;product=tRNA-Ser NZ_CP010961.1 RefSeq gene 3393980 3394774 . - . ID=gene3230;Name=RD04_RS16155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16155;old_locus_tag=RD04_16120 NZ_CP010961.1 Protein Homology CDS 3393980 3394774 . - 0 ID=cds3170;Parent=gene3230;Dbxref=Genbank:WP_010931341.1;Name=WP_010931341.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010931341.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3394875 3396110 . + . ID=gene3231;Name=RD04_RS16160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16160;old_locus_tag=RD04_16125 NZ_CP010961.1 Protein Homology CDS 3394875 3396110 . + 0 ID=cds3171;Parent=gene3231;Dbxref=Genbank:WP_010927102.1;Name=WP_010927102.1;gbkey=CDS;product=methylaspartate ammonia-lyase;protein_id=WP_010927102.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3396179 3397195 . + . ID=gene3232;Name=RD04_RS16165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16165;old_locus_tag=RD04_16130 NZ_CP010961.1 Protein Homology CDS 3396179 3397195 . + 0 ID=cds3172;Parent=gene3232;Dbxref=Genbank:WP_003814852.1;Name=WP_003814852.1;gbkey=CDS;product=MFS transporter;protein_id=WP_003814852.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3397207 3398583 . + . ID=gene3233;Name=RD04_RS16170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16170;old_locus_tag=RD04_16135 NZ_CP010961.1 Protein Homology CDS 3397207 3398583 . + 0 ID=cds3173;Parent=gene3233;Dbxref=Genbank:WP_010931342.1;Name=WP_010931342.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931342.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3398580 3399776 . + . ID=gene3234;Name=RD04_RS16175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16175;old_locus_tag=RD04_16140 NZ_CP010961.1 Protein Homology CDS 3398580 3399776 . + 0 ID=cds3174;Parent=gene3234;Dbxref=Genbank:WP_003814856.1;Name=WP_003814856.1;gbkey=CDS;product=membrane protein;protein_id=WP_003814856.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3399773 3401311 . - . ID=gene3235;Name=RD04_RS16180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16180;old_locus_tag=RD04_16145 NZ_CP010961.1 Protein Homology CDS 3399773 3401311 . - 0 ID=cds3175;Parent=gene3235;Dbxref=Genbank:WP_003814858.1;Name=WP_003814858.1;gbkey=CDS;product=SpoVR family protein;protein_id=WP_003814858.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3401308 3402567 . - . ID=gene3236;Name=RD04_RS16185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16185;old_locus_tag=RD04_16150 NZ_CP010961.1 Protein Homology CDS 3401308 3402567 . - 0 ID=cds3176;Parent=gene3236;Dbxref=Genbank:WP_010931343.1;Name=WP_010931343.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931343.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3402580 3404505 . - . ID=gene3237;Name=RD04_RS16190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16190;old_locus_tag=RD04_16155;pseudo=true NZ_CP010961.1 Protein Homology CDS 3402580 3404505 . - 0 ID=cds3177;Parent=gene3237;Note=internal stop;gbkey=CDS;product=PrkA family serine protein kinase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3404508 3405410 . - . ID=gene3238;Name=RD04_RS16195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16195;old_locus_tag=RD04_16160 NZ_CP010961.1 GeneMarkS+ CDS 3404508 3405410 . - 0 ID=cds3178;Parent=gene3238;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3405555 3406178 . - . ID=gene3239;Name=RD04_RS16200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16200;old_locus_tag=RD04_16165;partial=true;pseudo=true;start_range=.,3405555 NZ_CP010961.1 Protein Homology CDS 3405555 3406178 . - 0 ID=cds3179;Parent=gene3239;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=short-chain dehydrogenase;pseudo=true;start_range=.,3405555;transl_table=11 NZ_CP010961.1 RefSeq gene 3406225 3407319 . - . ID=gene3240;Name=RD04_RS16205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16205;old_locus_tag=RD04_16170 NZ_CP010961.1 Protein Homology CDS 3406225 3407319 . - 0 ID=cds3180;Parent=gene3240;Dbxref=Genbank:WP_010931344.1;Name=WP_010931344.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010931344.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3407312 3408646 . - . ID=gene3241;Name=RD04_RS16210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16210;old_locus_tag=RD04_16175 NZ_CP010961.1 Protein Homology CDS 3407312 3408646 . - 0 ID=cds3181;Parent=gene3241;Dbxref=Genbank:WP_019247312.1;Name=WP_019247312.1;gbkey=CDS;product=CoA ligase;protein_id=WP_019247312.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3408600 3409283 . - . ID=gene3242;Name=RD04_RS16215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16215;old_locus_tag=RD04_16180 NZ_CP010961.1 Protein Homology CDS 3408600 3409283 . - 0 ID=cds3182;Parent=gene3242;Dbxref=Genbank:WP_003808193.1;Name=WP_003808193.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_003808193.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3409309 3410472 . - . ID=gene3243;Name=RD04_RS16220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16220;old_locus_tag=RD04_16185 NZ_CP010961.1 Protein Homology CDS 3409309 3410472 . - 0 ID=cds3183;Parent=gene3243;Dbxref=Genbank:WP_003808195.1;Name=WP_003808195.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_003808195.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3410469 3411470 . - . ID=gene3244;Name=RD04_RS16225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16225;old_locus_tag=RD04_16190 NZ_CP010961.1 Protein Homology CDS 3410469 3411470 . - 0 ID=cds3184;Parent=gene3244;Dbxref=Genbank:WP_004566224.1;Name=WP_004566224.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_004566224.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3411470 3412342 . - . ID=gene3245;Name=RD04_RS16230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16230;old_locus_tag=RD04_16195 NZ_CP010961.1 Protein Homology CDS 3411470 3412342 . - 0 ID=cds3185;Parent=gene3245;Dbxref=Genbank:WP_010931346.1;Name=WP_010931346.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931346.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3412339 3413088 . - . ID=gene3246;Name=RD04_RS16235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16235;old_locus_tag=RD04_16200 NZ_CP010961.1 Protein Homology CDS 3412339 3413088 . - 0 ID=cds3186;Parent=gene3246;Dbxref=Genbank:WP_010931347.1;Name=WP_010931347.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931347.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3413085 3413876 . - . ID=gene3247;Name=RD04_RS16240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16240;old_locus_tag=RD04_16205 NZ_CP010961.1 Protein Homology CDS 3413085 3413876 . - 0 ID=cds3187;Parent=gene3247;Dbxref=Genbank:WP_010931348.1;Name=WP_010931348.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931348.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3413873 3415012 . - . ID=gene3248;Name=RD04_RS16245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16245;old_locus_tag=RD04_16210 NZ_CP010961.1 Protein Homology CDS 3413873 3415012 . - 0 ID=cds3188;Parent=gene3248;Dbxref=Genbank:WP_010931349.1;Name=WP_010931349.1;gbkey=CDS;product=ABC transporter;protein_id=WP_010931349.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3415288 3416073 . + . ID=gene3249;Name=RD04_RS16250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16250;old_locus_tag=RD04_16215 NZ_CP010961.1 Protein Homology CDS 3415288 3416073 . + 0 ID=cds3189;Parent=gene3249;Dbxref=Genbank:WP_047122778.1;Name=WP_047122778.1;gbkey=CDS;product=3-hydroxy-2-methylbutyryl-CoA dehydrogenase;protein_id=WP_047122778.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3416107 3416889 . + . ID=gene3250;Name=RD04_RS16255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16255;old_locus_tag=RD04_16220 NZ_CP010961.1 Protein Homology CDS 3416107 3416889 . + 0 ID=cds3190;Parent=gene3250;Dbxref=Genbank:WP_014486103.1;Name=WP_014486103.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_014486103.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3416893 3417282 . + . ID=gene3251;Name=RD04_RS16260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16260;old_locus_tag=RD04_16225 NZ_CP010961.1 Protein Homology CDS 3416893 3417282 . + 0 ID=cds3191;Parent=gene3251;Dbxref=Genbank:WP_010931351.1;Name=WP_010931351.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931351.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3417279 3418413 . + . ID=gene3252;Name=RD04_RS16265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16265;old_locus_tag=RD04_16230;pseudo=true NZ_CP010961.1 Protein Homology CDS 3417279 3418413 . + 0 ID=cds3192;Parent=gene3252;Note=frameshifted;gbkey=CDS;product=thiolase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3418422 3419285 . + . ID=gene3253;Name=RD04_RS16270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16270;old_locus_tag=RD04_16235 NZ_CP010961.1 Protein Homology CDS 3418422 3419285 . + 0 ID=cds3193;Parent=gene3253;Dbxref=Genbank:WP_010931352.1;Name=WP_010931352.1;gbkey=CDS;product=3-alpha%2C7-alpha%2C12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase;protein_id=WP_010931352.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3419321 3420409 . + . ID=gene3254;Name=RD04_RS16275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16275;old_locus_tag=RD04_16240 NZ_CP010961.1 Protein Homology CDS 3419321 3420409 . + 0 ID=cds3194;Parent=gene3254;Dbxref=Genbank:WP_010931353.1;Name=WP_010931353.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931353.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3420406 3421356 . - . ID=gene3255;Name=RD04_RS16280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16280;old_locus_tag=RD04_16245 NZ_CP010961.1 Protein Homology CDS 3420406 3421356 . - 0 ID=cds3195;Parent=gene3255;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3421710 3424688 . + . ID=gene3256;Name=RD04_RS16285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16285;old_locus_tag=RD04_16250 NZ_CP010961.1 Protein Homology CDS 3421710 3424688 . + 0 ID=cds3196;Parent=gene3256;Dbxref=Genbank:WP_019247959.1;Name=WP_019247959.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247959.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3424855 3425631 . + . ID=gene3257;Name=RD04_RS16290;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16290;old_locus_tag=RD04_16255;pseudo=true NZ_CP010961.1 Protein Homology CDS 3424855 3425631 . + 0 ID=cds3197;Parent=gene3257;Note=internal stop;gbkey=CDS;product=desaturase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3425615 3426493 . + . ID=gene3258;Name=RD04_RS16295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16295;old_locus_tag=RD04_16260 NZ_CP010961.1 Protein Homology CDS 3425615 3426493 . + 0 ID=cds3198;Parent=gene3258;Dbxref=Genbank:WP_003818344.1;Name=WP_003818344.1;gbkey=CDS;product=fatty acid desaturase;protein_id=WP_003818344.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3426529 3426861 . + . ID=gene3259;Name=RD04_RS16300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16300;old_locus_tag=RD04_16265 NZ_CP010961.1 Protein Homology CDS 3426529 3426861 . + 0 ID=cds3199;Parent=gene3259;Dbxref=Genbank:WP_019247956.1;Name=WP_019247956.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247956.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3426840 3428360 . + . ID=gene3260;Name=RD04_RS16305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16305;old_locus_tag=RD04_16270 NZ_CP010961.1 GeneMarkS+ CDS 3426840 3428360 . + 0 ID=cds3200;Parent=gene3260;Dbxref=Genbank:WP_023852872.1;Name=WP_023852872.1;gbkey=CDS;product=3-oxoacyl-ACP synthase III;protein_id=WP_023852872.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3428442 3429392 . + . ID=gene3261;Name=RD04_RS16310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16310;old_locus_tag=RD04_16275 NZ_CP010961.1 Protein Homology CDS 3428442 3429392 . + 0 ID=cds3201;Parent=gene3261;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3429389 3429856 . - . ID=gene3262;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=RD04_RS16315;old_locus_tag=RD04_16280 NZ_CP010961.1 Protein Homology CDS 3429389 3429856 . - 0 ID=cds3202;Parent=gene3262;Dbxref=Genbank:WP_010931354.1;Name=WP_010931354.1;Note=An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids;gbkey=CDS;gene=rnhA;product=ribonuclease H;protein_id=WP_010931354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3429899 3430669 . - . ID=gene3263;Name=RD04_RS16320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16320;old_locus_tag=RD04_16285 NZ_CP010961.1 Protein Homology CDS 3429899 3430669 . - 0 ID=cds3203;Parent=gene3263;Dbxref=Genbank:WP_010931355.1;Name=WP_010931355.1;gbkey=CDS;product=methyltransferase type 11;protein_id=WP_010931355.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3430690 3431490 . + . ID=gene3264;Name=RD04_RS16325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16325;old_locus_tag=RD04_16290 NZ_CP010961.1 Protein Homology CDS 3430690 3431490 . + 0 ID=cds3204;Parent=gene3264;Dbxref=Genbank:WP_010927090.1;Name=WP_010927090.1;gbkey=CDS;product=hydroxyacylglutathione hydrolase;protein_id=WP_010927090.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3431501 3432910 . + . ID=gene3265;Name=RD04_RS16330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16330;old_locus_tag=RD04_16295 NZ_CP010961.1 Protein Homology CDS 3431501 3432910 . + 0 ID=cds3205;Parent=gene3265;Dbxref=Genbank:WP_010931356.1;Name=WP_010931356.1;gbkey=CDS;product=lytic transglycosylase;protein_id=WP_010931356.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3433005 3433790 . + . ID=gene3266;Name=RD04_RS16335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16335;old_locus_tag=RD04_16300 NZ_CP010961.1 Protein Homology CDS 3433005 3433790 . + 0 ID=cds3206;Parent=gene3266;Dbxref=Genbank:WP_003814739.1;Name=WP_003814739.1;gbkey=CDS;product=enoyl-[acyl-carrier-protein] reductase;protein_id=WP_003814739.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3434030 3435046 . + . ID=gene3267;Name=RD04_RS16340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16340;old_locus_tag=RD04_16305 NZ_CP010961.1 Protein Homology CDS 3434030 3435046 . + 0 ID=cds3207;Parent=gene3267;Dbxref=Genbank:WP_023994644.1;Name=WP_023994644.1;gbkey=CDS;product=transposase;protein_id=WP_023994644.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3435154 3435546 . - . ID=gene3268;Name=RD04_RS16345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16345;old_locus_tag=RD04_16310 NZ_CP010961.1 Protein Homology CDS 3435154 3435546 . - 0 ID=cds3208;Parent=gene3268;Dbxref=Genbank:WP_003814742.1;Name=WP_003814742.1;gbkey=CDS;product=peroxiredoxin;protein_id=WP_003814742.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3435684 3436364 . + . ID=gene3269;Name=RD04_RS16350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16350;old_locus_tag=RD04_16315 NZ_CP010961.1 Protein Homology CDS 3435684 3436364 . + 0 ID=cds3209;Parent=gene3269;Dbxref=Genbank:WP_010931357.1;Name=WP_010931357.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931357.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3436369 3437340 . - . ID=gene3270;Name=RD04_RS16355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16355;old_locus_tag=RD04_16320 NZ_CP010961.1 Protein Homology CDS 3436369 3437340 . - 0 ID=cds3210;Parent=gene3270;Dbxref=Genbank:WP_023994844.1;Name=WP_023994844.1;gbkey=CDS;product=tripartite tricarboxylate transporter family receptor;protein_id=WP_023994844.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3437436 3438338 . - . ID=gene3271;Name=RD04_RS16360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16360;old_locus_tag=RD04_16325 NZ_CP010961.1 GeneMarkS+ CDS 3437436 3438338 . - 0 ID=cds3211;Parent=gene3271;Dbxref=Genbank:WP_041166329.1;Name=WP_041166329.1;gbkey=CDS;product=integrase;protein_id=WP_041166329.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3438483 3439733 . - . ID=gene3272;Name=RD04_RS16365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16365;old_locus_tag=RD04_16330;partial=true;pseudo=true;start_range=.,3438483 NZ_CP010961.1 Protein Homology CDS 3438483 3439733 . - 0 ID=cds3212;Parent=gene3272;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=fimbrial protein;pseudo=true;start_range=.,3438483;transl_table=11 NZ_CP010961.1 RefSeq gene 3439891 3440592 . + . ID=gene3273;Name=ompR;gbkey=Gene;gene=ompR;gene_biotype=protein_coding;locus_tag=RD04_RS16370;old_locus_tag=RD04_16335 NZ_CP010961.1 Protein Homology CDS 3439891 3440592 . + 0 ID=cds3213;Parent=gene3273;Dbxref=Genbank:WP_003814239.1;Name=WP_003814239.1;Note=part of two-component system EnvZ/OmpR%3B regulates transcription of outer membrane porin genes ompC/F%3B under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR%3B the result is increased expression of ompC and repression of ompF%3B also functions in regulation of other genes%3B forms dimers upon phosphorylation;gbkey=CDS;gene=ompR;product=DNA-binding response regulator;protein_id=WP_003814239.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3440592 3442016 . + . ID=gene3274;Name=RD04_RS16375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16375;old_locus_tag=RD04_16340 NZ_CP010961.1 Protein Homology CDS 3440592 3442016 . + 0 ID=cds3214;Parent=gene3274;Dbxref=Genbank:WP_010927010.1;Name=WP_010927010.1;gbkey=CDS;product=ATPase;protein_id=WP_010927010.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3442033 3443088 . - . ID=gene3275;Name=RD04_RS16380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16380;old_locus_tag=RD04_16345 NZ_CP010961.1 Protein Homology CDS 3442033 3443088 . - 0 ID=cds3215;Parent=gene3275;Dbxref=Genbank:WP_010931360.1;Name=WP_010931360.1;gbkey=CDS;product=cytochrome oxidase;protein_id=WP_010931360.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3443085 3444425 . - . ID=gene3276;Name=RD04_RS16385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16385;old_locus_tag=RD04_16350 NZ_CP010961.1 Protein Homology CDS 3443085 3444425 . - 0 ID=cds3216;Parent=gene3276;Dbxref=Genbank:WP_010931361.1;Name=WP_010931361.1;gbkey=CDS;product=cytochrome oxidase;protein_id=WP_010931361.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3444541 3446304 . + . ID=gene3277;Name=RD04_RS16390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16390;old_locus_tag=RD04_16355 NZ_CP010961.1 Protein Homology CDS 3444541 3446304 . + 0 ID=cds3217;Parent=gene3277;Dbxref=Genbank:WP_003820957.1;Name=WP_003820957.1;gbkey=CDS;product=glutamine--tRNA ligase;protein_id=WP_003820957.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3446416 3447294 . + . ID=gene3278;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=RD04_RS16395;old_locus_tag=RD04_16360 NZ_CP010961.1 Protein Homology CDS 3446416 3447294 . + 0 ID=cds3218;Parent=gene3278;Dbxref=Genbank:WP_010931362.1;Name=WP_010931362.1;Note=blocks the formation of polar Z-ring septums;gbkey=CDS;gene=minC;product=septum site-determining protein MinC;protein_id=WP_010931362.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3447407 3448222 . + . ID=gene3279;Name=RD04_RS16400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16400;old_locus_tag=RD04_16365 NZ_CP010961.1 Protein Homology CDS 3447407 3448222 . + 0 ID=cds3219;Parent=gene3279;Dbxref=Genbank:WP_003814250.1;Name=WP_003814250.1;Note=ATPase%3B with MinC inhibits cell division by blocking formation of the polar Z ring septums;gbkey=CDS;product=septum site-determining protein MinD;protein_id=WP_003814250.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3448226 3448477 . + . ID=gene3280;Name=RD04_RS16405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16405;old_locus_tag=RD04_16370 NZ_CP010961.1 Protein Homology CDS 3448226 3448477 . + 0 ID=cds3220;Parent=gene3280;Dbxref=Genbank:WP_003814252.1;Name=WP_003814252.1;Note=works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell;gbkey=CDS;product=cell division topological specificity factor;protein_id=WP_003814252.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3448562 3449578 . - . ID=gene3281;Name=RD04_RS16410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16410;old_locus_tag=RD04_16375 NZ_CP010961.1 Protein Homology CDS 3448562 3449578 . - 0 ID=cds3221;Parent=gene3281;Dbxref=Genbank:WP_010930525.1;Name=WP_010930525.1;gbkey=CDS;product=transposase;protein_id=WP_010930525.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3449909 3450130 . - . ID=gene3282;Name=RD04_RS16415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16415;old_locus_tag=RD04_16380 NZ_CP010961.1 Protein Homology CDS 3449909 3450130 . - 0 ID=cds3222;Parent=gene3282;Dbxref=Genbank:WP_003814254.1;Name=WP_003814254.1;gbkey=CDS;product=ornithine carbamoyltransferase;protein_id=WP_003814254.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3450328 3450755 . - . ID=gene3283;Name=RD04_RS16420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16420;old_locus_tag=RD04_16385;pseudo=true NZ_CP010961.1 Protein Homology CDS 3450328 3450755 . - 0 ID=cds3223;Parent=gene3283;Note=frameshifted;gbkey=CDS;product=isochorismatase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3450776 3452396 . - . ID=gene3284;Name=RD04_RS16425;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16425;old_locus_tag=RD04_16390;pseudo=true NZ_CP010961.1 Protein Homology CDS 3450776 3452396 . - 0 ID=cds3224;Parent=gene3284;Note=frameshifted;gbkey=CDS;product=energy-dependent translational throttle protein EttA;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3452491 3453357 . - . ID=gene3285;Name=RD04_RS16430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16430;old_locus_tag=RD04_16395 NZ_CP010961.1 Protein Homology CDS 3452491 3453357 . - 0 ID=cds3225;Parent=gene3285;Dbxref=Genbank:WP_010931364.1;Name=WP_010931364.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931364.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3453906 3455114 . - . ID=gene3286;Name=RD04_RS16435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16435;old_locus_tag=RD04_16400 NZ_CP010961.1 Protein Homology CDS 3453906 3455114 . - 0 ID=cds3226;Parent=gene3286;Dbxref=Genbank:WP_019247692.1;Name=WP_019247692.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_019247692.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3455194 3456765 . - . ID=gene3287;Name=RD04_RS16440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16440;old_locus_tag=RD04_16405 NZ_CP010961.1 Protein Homology CDS 3455194 3456765 . - 0 ID=cds3227;Parent=gene3287;Dbxref=Genbank:WP_010931365.1;Name=WP_010931365.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931365.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3456883 3457818 . - . ID=gene3288;Name=RD04_RS16445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16445;old_locus_tag=RD04_16410 NZ_CP010961.1 Protein Homology CDS 3456883 3457818 . - 0 ID=cds3228;Parent=gene3288;Dbxref=Genbank:WP_003814275.1;Name=WP_003814275.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_003814275.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3458007 3458951 . + . ID=gene3289;Name=RD04_RS16450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16450;old_locus_tag=RD04_16415 NZ_CP010961.1 Protein Homology CDS 3458007 3458951 . + 0 ID=cds3229;Parent=gene3289;Dbxref=Genbank:WP_003814277.1;Name=WP_003814277.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003814277.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3459020 3459190 . - . ID=gene3290;Name=RD04_RS16455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16455;old_locus_tag=RD04_16420 NZ_CP010961.1 Protein Homology CDS 3459020 3459190 . - 0 ID=cds3230;Parent=gene3290;Dbxref=Genbank:WP_033446331.1;Name=WP_033446331.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446331.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3459519 3465236 . + . ID=gene3291;Name=RD04_RS16460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16460;old_locus_tag=RD04_16425 NZ_CP010961.1 Protein Homology CDS 3459519 3465236 . + 0 ID=cds3231;Parent=gene3291;Dbxref=Genbank:WP_003814283.1;Name=WP_003814283.1;gbkey=CDS;product=excinuclease ABC subunit A;protein_id=WP_003814283.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3465242 3466369 . + . ID=gene3292;Name=RD04_RS16465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16465;old_locus_tag=RD04_16430 NZ_CP010961.1 Protein Homology CDS 3465242 3466369 . + 0 ID=cds3232;Parent=gene3292;Dbxref=Genbank:WP_010931367.1;Name=WP_010931367.1;gbkey=CDS;product=aminodeoxychorismate synthase%2C component I;protein_id=WP_010931367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3466425 3467051 . + . ID=gene3293;Name=RD04_RS16470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16470;old_locus_tag=RD04_16435 NZ_CP010961.1 Protein Homology CDS 3466425 3467051 . + 0 ID=cds3233;Parent=gene3293;Dbxref=Genbank:WP_003814287.1;Name=WP_003814287.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814287.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3467323 3468339 . + . ID=gene3294;Name=RD04_RS16475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16475;old_locus_tag=RD04_16440 NZ_CP010961.1 Protein Homology CDS 3467323 3468339 . + 0 ID=cds3234;Parent=gene3294;Dbxref=Genbank:WP_010931363.1;Name=WP_010931363.1;gbkey=CDS;product=transposase;protein_id=WP_010931363.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3468435 3469145 . - . ID=gene3295;Name=RD04_RS16480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16480;old_locus_tag=RD04_16445 NZ_CP010961.1 Protein Homology CDS 3468435 3469145 . - 0 ID=cds3235;Parent=gene3295;Dbxref=Genbank:WP_010927020.1;Name=WP_010927020.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010927020.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3469142 3470131 . - . ID=gene3296;Name=RD04_RS16485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16485;old_locus_tag=RD04_16450 NZ_CP010961.1 Protein Homology CDS 3469142 3470131 . - 0 ID=cds3236;Parent=gene3296;Dbxref=Genbank:WP_010931368.1;Name=WP_010931368.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931368.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3470227 3471858 . + . ID=gene3297;Name=RD04_RS16490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16490;old_locus_tag=RD04_16455 NZ_CP010961.1 Protein Homology CDS 3470227 3471858 . + 0 ID=cds3237;Parent=gene3297;Dbxref=Genbank:WP_010931369.1;Name=WP_010931369.1;gbkey=CDS;product=acyl-CoA synthetase;protein_id=WP_010931369.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3471861 3472598 . + . ID=gene3298;Name=RD04_RS16495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16495;old_locus_tag=RD04_16460 NZ_CP010961.1 Protein Homology CDS 3471861 3472598 . + 0 ID=cds3238;Parent=gene3298;Dbxref=Genbank:WP_010931370.1;Name=WP_010931370.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010931370.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3472754 3473626 . - . ID=gene3299;Name=RD04_RS16500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16500;old_locus_tag=RD04_16465 NZ_CP010961.1 Protein Homology CDS 3472754 3473626 . - 0 ID=cds3239;Parent=gene3299;Dbxref=Genbank:WP_019247745.1;Name=WP_019247745.1;gbkey=CDS;product=tRNA threonylcarbamoyladenosine dehydratase;protein_id=WP_019247745.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3473976 3475115 . + . ID=gene3300;Name=RD04_RS16505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16505;old_locus_tag=RD04_16470 NZ_CP010961.1 Protein Homology CDS 3473976 3475115 . + 0 ID=cds3240;Parent=gene3300;Dbxref=Genbank:WP_023852703.1;Name=WP_023852703.1;gbkey=CDS;product=MFS transporter;protein_id=WP_023852703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3475112 3475771 . + . ID=gene3301;Name=RD04_RS16510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16510;old_locus_tag=RD04_16475 NZ_CP010961.1 Protein Homology CDS 3475112 3475771 . + 0 ID=cds3241;Parent=gene3301;Dbxref=Genbank:WP_003814300.1;Name=WP_003814300.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814300.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3475843 3476475 . + . ID=gene3302;Name=RD04_RS16515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16515;old_locus_tag=RD04_16480 NZ_CP010961.1 Protein Homology CDS 3475843 3476475 . + 0 ID=cds3242;Parent=gene3302;Dbxref=Genbank:WP_003814302.1;Name=WP_003814302.1;gbkey=CDS;product=pyridoxine/pyridoxamine 5'-phosphate oxidase;protein_id=WP_003814302.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3476505 3477023 . + . ID=gene3303;Name=RD04_RS16520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16520;old_locus_tag=RD04_16485 NZ_CP010961.1 Protein Homology CDS 3476505 3477023 . + 0 ID=cds3243;Parent=gene3303;Dbxref=Genbank:WP_010931372.1;Name=WP_010931372.1;gbkey=CDS;product=flavin reductase;protein_id=WP_010931372.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3477034 3478143 . + . ID=gene3304;Name=RD04_RS16525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16525;old_locus_tag=RD04_16490 NZ_CP010961.1 Protein Homology CDS 3477034 3478143 . + 0 ID=cds3244;Parent=gene3304;Dbxref=Genbank:WP_010931373.1;Name=WP_010931373.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_010931373.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3478190 3479044 . + . ID=gene3305;Name=RD04_RS16530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16530;old_locus_tag=RD04_16495 NZ_CP010961.1 Protein Homology CDS 3478190 3479044 . + 0 ID=cds3245;Parent=gene3305;Dbxref=Genbank:WP_003814312.1;Name=WP_003814312.1;gbkey=CDS;product=formyltetrahydrofolate deformylase;protein_id=WP_003814312.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3479046 3479948 . - . ID=gene3306;Name=RD04_RS16535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16535;old_locus_tag=RD04_16500 NZ_CP010961.1 Protein Homology CDS 3479046 3479948 . - 0 ID=cds3246;Parent=gene3306;Dbxref=Genbank:WP_010931374.1;Name=WP_010931374.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931374.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3480058 3481176 . + . ID=gene3307;Name=RD04_RS16540;end_range=3481176,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16540;old_locus_tag=RD04_16505;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3480058 3481176 . + 0 ID=cds3247;Parent=gene3307;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=3481176,.;gbkey=CDS;partial=true;product=DNA alkylation response protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3481171 3482121 . - . ID=gene3308;Name=RD04_RS16545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16545;old_locus_tag=RD04_16510 NZ_CP010961.1 Protein Homology CDS 3481171 3482121 . - 0 ID=cds3248;Parent=gene3308;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3482220 3483353 . - . ID=gene3309;Name=RD04_RS16550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16550;old_locus_tag=RD04_16515 NZ_CP010961.1 GeneMarkS+ CDS 3482220 3483353 . - 0 ID=cds3249;Parent=gene3309;Dbxref=Genbank:WP_019247867.1;Name=WP_019247867.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247867.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3483390 3483638 . - . ID=gene3310;Name=RD04_RS16555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16555;old_locus_tag=RD04_16520 NZ_CP010961.1 Protein Homology CDS 3483390 3483638 . - 0 ID=cds3250;Parent=gene3310;Dbxref=Genbank:WP_019248386.1;Name=WP_019248386.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019248386.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3483878 3484867 . + . ID=gene3311;Name=RD04_RS16560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16560;old_locus_tag=RD04_16525 NZ_CP010961.1 Protein Homology CDS 3483878 3484867 . + 0 ID=cds3251;Parent=gene3311;Dbxref=Genbank:WP_014905441.1;Name=WP_014905441.1;gbkey=CDS;product=integrase;protein_id=WP_014905441.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3485043 3485831 . - . ID=gene3312;Name=trpC;gbkey=Gene;gene=trpC;gene_biotype=protein_coding;locus_tag=RD04_RS16565;old_locus_tag=RD04_16530 NZ_CP010961.1 Protein Homology CDS 3485043 3485831 . - 0 ID=cds3252;Parent=gene3312;Dbxref=Genbank:WP_010931375.1;Name=WP_010931375.1;Note=involved in tryptophan biosynthesis%3B amino acid biosynthesis%3B converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water;gbkey=CDS;gene=trpC;product=indole-3-glycerol-phosphate synthase;protein_id=WP_010931375.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3485828 3486859 . - . ID=gene3313;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=RD04_RS16570;old_locus_tag=RD04_16535 NZ_CP010961.1 Protein Homology CDS 3485828 3486859 . - 0 ID=cds3253;Parent=gene3313;Dbxref=Genbank:WP_003817833.1;Name=WP_003817833.1;Note=Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate;gbkey=CDS;gene=trpD;product=anthranilate phosphoribosyltransferase;protein_id=WP_003817833.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3486878 3487441 . - . ID=gene3314;Name=RD04_RS16575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16575;old_locus_tag=RD04_16540 NZ_CP010961.1 Protein Homology CDS 3486878 3487441 . - 0 ID=cds3254;Parent=gene3314;Dbxref=Genbank:WP_003815390.1;Name=WP_003815390.1;Note=TrpG%3B with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine%3B TrpG provides the glutamine amidotransferase activity;gbkey=CDS;product=glutamine amidotransferase;protein_id=WP_003815390.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3487497 3489017 . - . ID=gene3315;Name=RD04_RS16580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16580;old_locus_tag=RD04_16545 NZ_CP010961.1 Protein Homology CDS 3487497 3489017 . - 0 ID=cds3255;Parent=gene3315;Dbxref=Genbank:WP_010931376.1;Name=WP_010931376.1;Note=with component II%2C the glutamine amidotransferase%2C catalyzes the formation of anthranilate from chorismate and glutamine;gbkey=CDS;product=anthranilate synthase component I;protein_id=WP_010931376.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3489281 3489985 . - . ID=gene3316;Name=RD04_RS16585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16585;old_locus_tag=RD04_16550 NZ_CP010961.1 Protein Homology CDS 3489281 3489985 . - 0 ID=cds3256;Parent=gene3316;Dbxref=Genbank:WP_010931377.1;Name=WP_010931377.1;gbkey=CDS;product=phosphoglycolate phosphatase%2C bacterial;protein_id=WP_010931377.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3489993 3490721 . - . ID=gene3317;Name=RD04_RS16590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16590;old_locus_tag=RD04_16555 NZ_CP010961.1 Protein Homology CDS 3489993 3490721 . - 0 ID=cds3257;Parent=gene3317;Dbxref=Genbank:WP_023852620.1;Name=WP_023852620.1;gbkey=CDS;product=ribulose-phosphate 3-epimerase;protein_id=WP_023852620.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3490836 3491210 . + . ID=gene3318;Name=RD04_RS16595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16595;old_locus_tag=RD04_16560 NZ_CP010961.1 Protein Homology CDS 3490836 3491210 . + 0 ID=cds3258;Parent=gene3318;Dbxref=Genbank:WP_003815381.1;Name=WP_003815381.1;gbkey=CDS;product=Co2+/Mg2+ efflux protein ApaG;protein_id=WP_003815381.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3491253 3492542 . + . ID=gene3319;Name=RD04_RS16600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16600;old_locus_tag=RD04_16565 NZ_CP010961.1 Protein Homology CDS 3491253 3492542 . + 0 ID=cds3259;Parent=gene3319;Dbxref=Genbank:WP_003815379.1;Name=WP_003815379.1;gbkey=CDS;product=membrane protein;protein_id=WP_003815379.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3492539 3493708 . + . ID=gene3320;Name=RD04_RS16605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16605;old_locus_tag=RD04_16570 NZ_CP010961.1 Protein Homology CDS 3492539 3493708 . + 0 ID=cds3260;Parent=gene3320;Dbxref=Genbank:WP_010931378.1;Name=WP_010931378.1;gbkey=CDS;product=ubiquinone biosynthesis hydroxylase UbiH;protein_id=WP_010931378.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3493735 3494544 . + . ID=gene3321;Name=RD04_RS16610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16610;old_locus_tag=RD04_16575 NZ_CP010961.1 Protein Homology CDS 3493735 3494544 . + 0 ID=cds3261;Parent=gene3321;Dbxref=Genbank:WP_023852645.1;Name=WP_023852645.1;gbkey=CDS;product=thioredoxin;protein_id=WP_023852645.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3494604 3495539 . + . ID=gene3322;Name=RD04_RS16615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16615;old_locus_tag=RD04_16580 NZ_CP010961.1 Protein Homology CDS 3494604 3495539 . + 0 ID=cds3262;Parent=gene3322;Dbxref=Genbank:WP_010931380.1;Name=WP_010931380.1;gbkey=CDS;product=2-hydroxyacid dehydrogenase;protein_id=WP_010931380.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3495552 3496502 . - . ID=gene3323;Name=RD04_RS16620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16620;old_locus_tag=RD04_16585 NZ_CP010961.1 Protein Homology CDS 3495552 3496502 . - 0 ID=cds3263;Parent=gene3323;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3496601 3497563 . - . ID=gene3324;Name=RD04_RS16625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16625;old_locus_tag=RD04_16590 NZ_CP010961.1 Protein Homology CDS 3496601 3497563 . - 0 ID=cds3264;Parent=gene3324;Dbxref=Genbank:WP_010931381.1;Name=WP_010931381.1;gbkey=CDS;product=tRNA 2-thiocytidine(32) synthetase TtcA;protein_id=WP_010931381.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3497595 3497954 . - . ID=gene3325;Name=RD04_RS16630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16630;old_locus_tag=RD04_16595 NZ_CP010961.1 Protein Homology CDS 3497595 3497954 . - 0 ID=cds3265;Parent=gene3325;Dbxref=Genbank:WP_003817821.1;Name=WP_003817821.1;gbkey=CDS;product=dihydroneopterin aldolase;protein_id=WP_003817821.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3498079 3498981 . + . ID=gene3326;Name=RD04_RS16635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16635;old_locus_tag=RD04_16600 NZ_CP010961.1 Protein Homology CDS 3498079 3498981 . + 0 ID=cds3266;Parent=gene3326;Dbxref=Genbank:WP_010931382.1;Name=WP_010931382.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010931382.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3498983 3500749 . - . ID=gene3327;Name=RD04_RS16640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16640;old_locus_tag=RD04_16605 NZ_CP010961.1 Protein Homology CDS 3498983 3500749 . - 0 ID=cds3267;Parent=gene3327;Dbxref=Genbank:WP_033446338.1;Name=WP_033446338.1;gbkey=CDS;product=peptidase M61;protein_id=WP_033446338.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3500790 3501566 . + . ID=gene3328;Name=RD04_RS16645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16645;old_locus_tag=RD04_16610 NZ_CP010961.1 Protein Homology CDS 3500790 3501566 . + 0 ID=cds3268;Parent=gene3328;Dbxref=Genbank:WP_003815367.1;Name=WP_003815367.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_003815367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3501863 3502894 . + . ID=gene3329;Name=RD04_RS16650;end_range=3502894,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16650;old_locus_tag=RD04_16615;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3501863 3502894 . + 0 ID=cds3269;Parent=gene3329;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=3502894,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3502890 3503792 . - . ID=gene3330;Name=RD04_RS16655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16655;old_locus_tag=RD04_16620 NZ_CP010961.1 GeneMarkS+ CDS 3502890 3503792 . - 0 ID=cds3270;Parent=gene3330;Dbxref=Genbank:WP_054604379.1;Name=WP_054604379.1;gbkey=CDS;product=integrase;protein_id=WP_054604379.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3504007 3504420 . + . ID=gene3331;Name=RD04_RS16660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16660;old_locus_tag=RD04_16625 NZ_CP010961.1 GeneMarkS+ CDS 3504007 3504420 . + 0 ID=cds3271;Parent=gene3331;Dbxref=Genbank:WP_023852640.1;Name=WP_023852640.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023852640.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3504692 3505012 . + . ID=gene3332;Name=RD04_RS16665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16665;old_locus_tag=RD04_16630 NZ_CP010961.1 Protein Homology CDS 3504692 3505012 . + 0 ID=cds3272;Parent=gene3332;Dbxref=Genbank:WP_003815365.1;Name=WP_003815365.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003815365.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3505085 3505966 . + . ID=gene3333;Name=RD04_RS16670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16670;old_locus_tag=RD04_16635 NZ_CP010961.1 Protein Homology CDS 3505085 3505966 . + 0 ID=cds3273;Parent=gene3333;Dbxref=Genbank:WP_003815364.1;Name=WP_003815364.1;gbkey=CDS;product=ATP synthase subunit A;protein_id=WP_003815364.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3506083 3506325 . + . ID=gene3334;Name=RD04_RS16675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16675;old_locus_tag=RD04_16640 NZ_CP010961.1 Protein Homology CDS 3506083 3506325 . + 0 ID=cds3274;Parent=gene3334;Dbxref=Genbank:WP_003815363.1;Name=WP_003815363.1;gbkey=CDS;product=F0F1 ATP synthase subunit C;protein_id=WP_003815363.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3506463 3506933 . + . ID=gene3335;Name=RD04_RS16680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16680;old_locus_tag=RD04_16645 NZ_CP010961.1 Protein Homology CDS 3506463 3506933 . + 0 ID=cds3275;Parent=gene3335;Dbxref=Genbank:WP_010931385.1;Name=WP_010931385.1;gbkey=CDS;product=ATP synthase subunit B;protein_id=WP_010931385.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3506946 3507485 . + . ID=gene3336;Name=RD04_RS16685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16685;old_locus_tag=RD04_16650 NZ_CP010961.1 Protein Homology CDS 3506946 3507485 . + 0 ID=cds3276;Parent=gene3336;Dbxref=Genbank:WP_003815348.1;Name=WP_003815348.1;gbkey=CDS;product=ATP synthase subunit delta;protein_id=WP_003815348.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3507520 3509061 . + . ID=gene3337;Name=RD04_RS16690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16690;old_locus_tag=RD04_16655 NZ_CP010961.1 Protein Homology CDS 3507520 3509061 . + 0 ID=cds3277;Parent=gene3337;Dbxref=Genbank:WP_010931386.1;Name=WP_010931386.1;Note=produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit;gbkey=CDS;product=ATP synthase subunit alpha;protein_id=WP_010931386.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3509160 3510065 . + . ID=gene3338;Name=RD04_RS16695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16695;old_locus_tag=RD04_16660 NZ_CP010961.1 Protein Homology CDS 3509160 3510065 . + 0 ID=cds3278;Parent=gene3338;Dbxref=Genbank:WP_003817813.1;Name=WP_003817813.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit;gbkey=CDS;product=ATP synthase subunit gamma;protein_id=WP_003817813.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3510108 3511508 . + . ID=gene3339;Name=RD04_RS16700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16700;old_locus_tag=RD04_16665 NZ_CP010961.1 Protein Homology CDS 3510108 3511508 . + 0 ID=cds3279;Parent=gene3339;Dbxref=Genbank:WP_010931387.1;Name=WP_010931387.1;gbkey=CDS;product=ATP synthase subunit beta;protein_id=WP_010931387.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3511518 3511940 . + . ID=gene3340;Name=RD04_RS16705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16705;old_locus_tag=RD04_16670 NZ_CP010961.1 Protein Homology CDS 3511518 3511940 . + 0 ID=cds3280;Parent=gene3340;Dbxref=Genbank:WP_003815341.1;Name=WP_003815341.1;gbkey=CDS;product=ATP synthase epsilon chain;protein_id=WP_003815341.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3512123 3513007 . + . ID=gene3341;Name=RD04_RS16710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16710;old_locus_tag=RD04_16675 NZ_CP010961.1 Protein Homology CDS 3512123 3513007 . + 0 ID=cds3281;Parent=gene3341;Dbxref=Genbank:WP_010931388.1;Name=WP_010931388.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931388.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3513083 3514159 . + . ID=gene3342;Name=RD04_RS16715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16715;old_locus_tag=RD04_16680 NZ_CP010961.1 Protein Homology CDS 3513083 3514159 . + 0 ID=cds3282;Parent=gene3342;Dbxref=Genbank:WP_010931389.1;Name=WP_010931389.1;gbkey=CDS;product=uroporphyrinogen decarboxylase;protein_id=WP_010931389.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3514466 3516568 . + . ID=gene3343;Name=RD04_RS16720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16720;old_locus_tag=RD04_16685 NZ_CP010961.1 Protein Homology CDS 3514466 3516568 . + 0 ID=cds3283;Parent=gene3343;Dbxref=Genbank:WP_019247688.1;Name=WP_019247688.1;gbkey=CDS;product=primosomal protein N';protein_id=WP_019247688.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3516611 3518680 . + . ID=gene3344;Name=RD04_RS16725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16725;old_locus_tag=RD04_16690 NZ_CP010961.1 Protein Homology CDS 3516611 3518680 . + 0 ID=cds3284;Parent=gene3344;Dbxref=Genbank:WP_010931391.1;Name=WP_010931391.1;gbkey=CDS;product=ATP-dependent DNA helicase Rep;protein_id=WP_010931391.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3518779 3519729 . + . ID=gene3345;Name=RD04_RS16730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16730;old_locus_tag=RD04_16695 NZ_CP010961.1 Protein Homology CDS 3518779 3519729 . + 0 ID=cds3285;Parent=gene3345;Dbxref=Genbank:WP_005012808.1;Name=WP_005012808.1;gbkey=CDS;product=transposase;protein_id=WP_005012808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3519858 3520991 . - . ID=gene3346;Name=RD04_RS16735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16735;old_locus_tag=RD04_16700 NZ_CP010961.1 Protein Homology CDS 3519858 3520991 . - 0 ID=cds3286;Parent=gene3346;Dbxref=Genbank:WP_010931392.1;Name=WP_010931392.1;gbkey=CDS;product=peptidase;protein_id=WP_010931392.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3521035 3521940 . - . ID=gene3347;Name=RD04_RS16740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16740;old_locus_tag=RD04_16705 NZ_CP010961.1 Protein Homology CDS 3521035 3521940 . - 0 ID=cds3287;Parent=gene3347;Dbxref=Genbank:WP_010931393.1;Name=WP_010931393.1;gbkey=CDS;product=hydrolase;protein_id=WP_010931393.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3521943 3522830 . - . ID=gene3348;Name=RD04_RS16745;end_range=3522830,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16745;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3521943 3522830 . - 0 ID=cds3288;Parent=gene3348;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=3522830,.;gbkey=CDS;partial=true;product=peptide ABC transporter ATP-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3523640 3524560 . - . ID=gene3349;Name=RD04_RS16750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16750;old_locus_tag=RD04_16715 NZ_CP010961.1 Protein Homology CDS 3523640 3524560 . - 0 ID=cds3289;Parent=gene3349;Dbxref=Genbank:WP_010931394.1;Name=WP_010931394.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_010931394.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3524568 3525545 . - . ID=gene3350;Name=RD04_RS16755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16755;old_locus_tag=RD04_16720 NZ_CP010961.1 Protein Homology CDS 3524568 3525545 . - 0 ID=cds3290;Parent=gene3350;Dbxref=Genbank:WP_003817805.1;Name=WP_003817805.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003817805.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3525604 3526563 . - . ID=gene3351;Name=RD04_RS16760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16760;old_locus_tag=RD04_16725 NZ_CP010961.1 Protein Homology CDS 3525604 3526563 . - 0 ID=cds3291;Parent=gene3351;Dbxref=Genbank:WP_023852626.1;Name=WP_023852626.1;gbkey=CDS;product=succinylglutamate desuccinylase/aspartoacylase;protein_id=WP_023852626.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3526687 3528315 . - . ID=gene3352;Name=RD04_RS16765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16765;old_locus_tag=RD04_16730;pseudo=true NZ_CP010961.1 Protein Homology CDS 3526687 3528315 . - 0 ID=cds3292;Parent=gene3352;Note=internal stop;gbkey=CDS;product=transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3528613 3528849 . - . ID=gene3353;Name=RD04_RS16770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16770;old_locus_tag=RD04_16735 NZ_CP010961.1 Protein Homology CDS 3528613 3528849 . - 0 ID=cds3293;Parent=gene3353;Dbxref=Genbank:WP_003815317.1;Name=WP_003815317.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815317.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3528976 3529839 . - . ID=gene3354;Name=RD04_RS16775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16775;old_locus_tag=RD04_16740 NZ_CP010961.1 Protein Homology CDS 3528976 3529839 . - 0 ID=cds3294;Parent=gene3354;Dbxref=Genbank:WP_010931396.1;Name=WP_010931396.1;gbkey=CDS;product=ADP-dependent (S)-NAD(P)H-hydrate dehydratase;protein_id=WP_010931396.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3529928 3530749 . + . ID=gene3355;Name=RD04_RS16780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16780;old_locus_tag=RD04_16745 NZ_CP010961.1 Protein Homology CDS 3529928 3530749 . + 0 ID=cds3295;Parent=gene3355;Dbxref=Genbank:WP_003815315.1;Name=WP_003815315.1;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_003815315.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3530829 3531566 . - . ID=gene3356;Name=RD04_RS16785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16785;old_locus_tag=RD04_16750 NZ_CP010961.1 Protein Homology CDS 3530829 3531566 . - 0 ID=cds3296;Parent=gene3356;Dbxref=Genbank:WP_003815313.1;Name=WP_003815313.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_003815313.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3531563 3532555 . - . ID=gene3357;Name=RD04_RS16790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16790;old_locus_tag=RD04_16755 NZ_CP010961.1 Protein Homology CDS 3531563 3532555 . - 0 ID=cds3297;Parent=gene3357;Dbxref=Genbank:WP_010931397.1;Name=WP_010931397.1;gbkey=CDS;product=2-nitropropane dioxygenase;protein_id=WP_010931397.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3532708 3533331 . + . ID=gene3358;Name=RD04_RS16795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16795;old_locus_tag=RD04_16760 NZ_CP010961.1 Protein Homology CDS 3532708 3533331 . + 0 ID=cds3298;Parent=gene3358;Dbxref=Genbank:WP_010931398.1;Name=WP_010931398.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_010931398.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3533376 3534524 . + . ID=gene3359;Name=RD04_RS16800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16800;old_locus_tag=RD04_16765 NZ_CP010961.1 Protein Homology CDS 3533376 3534524 . + 0 ID=cds3299;Parent=gene3359;Dbxref=Genbank:WP_010931399.1;Name=WP_010931399.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_010931399.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3534637 3535861 . + . ID=gene3360;Name=RD04_RS16805;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16805;old_locus_tag=RD04_16770;pseudo=true NZ_CP010961.1 Protein Homology CDS 3534637 3535861 . + 0 ID=cds3300;Parent=gene3360;Note=frameshifted;gbkey=CDS;product=CoA-transferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3535945 3536751 . + . ID=gene3361;Name=RD04_RS16810;end_range=3536751,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16810;old_locus_tag=RD04_16775;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3535945 3536751 . + 0 ID=cds3301;Parent=gene3361;Note=converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation%3B incomplete%3B partial in the middle of a contig%3B missing stop;end_range=3536751,.;gbkey=CDS;partial=true;product=3-hydroxyacyl-CoA dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3536896 3537798 . + . ID=gene3362;Name=RD04_RS16815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16815;old_locus_tag=RD04_16780 NZ_CP010961.1 GeneMarkS+ CDS 3536896 3537798 . + 0 ID=cds3302;Parent=gene3362;Dbxref=Genbank:WP_041166331.1;Name=WP_041166331.1;gbkey=CDS;product=integrase;protein_id=WP_041166331.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3537961 3538035 . + . ID=gene3363;Name=RD04_RS16820;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS16820;old_locus_tag=RD04_16785 NZ_CP010961.1 tRNAscan-SE tRNA 3537961 3538035 . + . ID=rna60;Parent=gene3363;anticodon=(pos:3537994..3537996);gbkey=tRNA;product=tRNA-Arg NZ_CP010961.1 tRNAscan-SE exon 3537961 3538035 . + . ID=id66;Parent=rna60;anticodon=(pos:3537994..3537996);gbkey=tRNA;product=tRNA-Arg NZ_CP010961.1 RefSeq gene 3538139 3540217 . + . ID=gene3364;Name=RD04_RS16825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16825;old_locus_tag=RD04_16790 NZ_CP010961.1 Protein Homology CDS 3538139 3540217 . + 0 ID=cds3303;Parent=gene3364;Dbxref=Genbank:WP_062826651.1;Name=WP_062826651.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_062826651.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3540271 3541197 . - . ID=gene3365;Name=RD04_RS16830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16830;old_locus_tag=RD04_16795 NZ_CP010961.1 Protein Homology CDS 3540271 3541197 . - 0 ID=cds3304;Parent=gene3365;Dbxref=Genbank:WP_010929965.1;Name=WP_010929965.1;gbkey=CDS;product=HPr kinase/phosphorylase;protein_id=WP_010929965.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3541216 3541671 . - . ID=gene3366;Name=RD04_RS16835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16835;old_locus_tag=RD04_16800 NZ_CP010961.1 Protein Homology CDS 3541216 3541671 . - 0 ID=cds3305;Parent=gene3366;Dbxref=Genbank:WP_010929966.1;Name=WP_010929966.1;gbkey=CDS;product=PTS sugar transporter subunit IIA;protein_id=WP_010929966.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3541948 3542169 . - . ID=gene3367;Name=RD04_RS16840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16840;old_locus_tag=RD04_16805 NZ_CP010961.1 Protein Homology CDS 3541948 3542169 . - 0 ID=cds3306;Parent=gene3367;Dbxref=Genbank:WP_019247685.1;Name=WP_019247685.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247685.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3542523 3543314 . - . ID=gene3368;Name=RD04_RS16845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16845;old_locus_tag=RD04_16810 NZ_CP010961.1 Protein Homology CDS 3542523 3543314 . - 0 ID=cds3307;Parent=gene3368;Dbxref=Genbank:WP_003815177.1;Name=WP_003815177.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003815177.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3543346 3543966 . - . ID=gene3369;Name=RD04_RS16850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16850;old_locus_tag=RD04_16815 NZ_CP010961.1 Protein Homology CDS 3543346 3543966 . - 0 ID=cds3308;Parent=gene3369;Dbxref=Genbank:WP_003815175.1;Name=WP_003815175.1;gbkey=CDS;product=lipopolysaccharide transport periplasmic protein LptA;protein_id=WP_003815175.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3543963 3544592 . - . ID=gene3370;Name=RD04_RS16855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16855;old_locus_tag=RD04_16820 NZ_CP010961.1 Protein Homology CDS 3543963 3544592 . - 0 ID=cds3309;Parent=gene3370;Dbxref=Genbank:WP_010929967.1;Name=WP_010929967.1;gbkey=CDS;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_010929967.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3544605 3545213 . - . ID=gene3371;Name=RD04_RS16860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16860;old_locus_tag=RD04_16825 NZ_CP010961.1 Protein Homology CDS 3544605 3545213 . - 0 ID=cds3310;Parent=gene3371;Dbxref=Genbank:WP_003815172.1;Name=WP_003815172.1;gbkey=CDS;product=hydrolase;protein_id=WP_003815172.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3545210 3546199 . - . ID=gene3372;Name=RD04_RS16865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16865;old_locus_tag=RD04_16830 NZ_CP010961.1 Protein Homology CDS 3545210 3546199 . - 0 ID=cds3311;Parent=gene3372;Dbxref=Genbank:WP_003815171.1;Name=WP_003815171.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815171.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3546305 3547519 . + . ID=gene3373;Name=RD04_RS16870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16870;old_locus_tag=RD04_16835 NZ_CP010961.1 Protein Homology CDS 3546305 3547519 . + 0 ID=cds3312;Parent=gene3373;Dbxref=Genbank:WP_010929968.1;Name=WP_010929968.1;gbkey=CDS;product=phosphoribosylglycinamide formyltransferase 2;protein_id=WP_010929968.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3547656 3549374 . + . ID=gene3374;Name=RD04_RS16875;end_range=3549374,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16875;old_locus_tag=RD04_16840;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3547656 3549374 . + 0 ID=cds3313;Parent=gene3374;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=3549374,.;gbkey=CDS;partial=true;product=TonB-dependent receptor;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3549471 3550421 . + . ID=gene3375;Name=RD04_RS16880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16880 NZ_CP010961.1 Protein Homology CDS 3549471 3550421 . + 0 ID=cds3314;Parent=gene3375;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3550469 3551728 . + . ID=gene3376;Name=RD04_RS16885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16885;old_locus_tag=RD04_16845 NZ_CP010961.1 GeneMarkS+ CDS 3550469 3551728 . + 0 ID=cds3315;Parent=gene3376;Dbxref=Genbank:WP_019247505.1;Name=WP_019247505.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247505.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3551855 3553141 . + . ID=gene3377;Name=RD04_RS16890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16890;old_locus_tag=RD04_16850 NZ_CP010961.1 Protein Homology CDS 3551855 3553141 . + 0 ID=cds3316;Parent=gene3377;Dbxref=Genbank:WP_010929970.1;Name=WP_010929970.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929970.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3553307 3553615 . + . ID=gene3378;Name=RD04_RS16895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16895;old_locus_tag=RD04_16855 NZ_CP010961.1 Protein Homology CDS 3553307 3553615 . + 0 ID=cds3317;Parent=gene3378;Dbxref=Genbank:WP_010929971.1;Name=WP_010929971.1;gbkey=CDS;product=FmdB family transcriptional regulator;protein_id=WP_010929971.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3553637 3554281 . + . ID=gene3379;Name=RD04_RS16900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16900;old_locus_tag=RD04_16860 NZ_CP010961.1 Protein Homology CDS 3553637 3554281 . + 0 ID=cds3318;Parent=gene3379;Dbxref=Genbank:WP_033446243.1;Name=WP_033446243.1;gbkey=CDS;product=membrane protein;protein_id=WP_033446243.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3554322 3556112 . + . ID=gene3380;Name=RD04_RS16905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16905;old_locus_tag=RD04_16865 NZ_CP010961.1 Protein Homology CDS 3554322 3556112 . + 0 ID=cds3319;Parent=gene3380;Dbxref=Genbank:WP_003807038.1;Name=WP_003807038.1;gbkey=CDS;product=aspartate--tRNA ligase;protein_id=WP_003807038.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3556225 3557085 . + . ID=gene3381;Name=RD04_RS16910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16910;old_locus_tag=RD04_16870 NZ_CP010961.1 Protein Homology CDS 3556225 3557085 . + 0 ID=cds3320;Parent=gene3381;Dbxref=Genbank:WP_010929972.1;Name=WP_010929972.1;gbkey=CDS;product=endonuclease;protein_id=WP_010929972.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3557082 3558287 . + . ID=gene3382;Name=RD04_RS16915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16915;old_locus_tag=RD04_16875 NZ_CP010961.1 Protein Homology CDS 3557082 3558287 . + 0 ID=cds3321;Parent=gene3382;Dbxref=Genbank:WP_010929973.1;Name=WP_010929973.1;gbkey=CDS;product=cardiolipin synthase B;protein_id=WP_010929973.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3558284 3559168 . - . ID=gene3383;Name=RD04_RS16920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16920;old_locus_tag=RD04_16880 NZ_CP010961.1 Protein Homology CDS 3558284 3559168 . - 0 ID=cds3322;Parent=gene3383;Dbxref=Genbank:WP_010929974.1;Name=WP_010929974.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929974.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3559184 3560550 . - . ID=gene3384;Name=RD04_RS16925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16925;old_locus_tag=RD04_16885;pseudo=true NZ_CP010961.1 Protein Homology CDS 3559184 3560550 . - 0 ID=cds3323;Parent=gene3384;Note=frameshifted;gbkey=CDS;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3560685 3561119 . - . ID=gene3385;Name=RD04_RS16930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16930;old_locus_tag=RD04_16890 NZ_CP010961.1 Protein Homology CDS 3560685 3561119 . - 0 ID=cds3324;Parent=gene3385;Dbxref=Genbank:WP_033446233.1;Name=WP_033446233.1;gbkey=CDS;product=carbon monoxide dehydrogenase;protein_id=WP_033446233.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3561082 3562080 . - . ID=gene3386;Name=RD04_RS16935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16935;old_locus_tag=RD04_16895 NZ_CP010961.1 Protein Homology CDS 3561082 3562080 . - 0 ID=cds3325;Parent=gene3386;Dbxref=Genbank:WP_014905478.1;Name=WP_014905478.1;gbkey=CDS;product=integrase;protein_id=WP_014905478.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3562192 3563337 . + . ID=gene3387;Name=RD04_RS16940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16940;old_locus_tag=RD04_16900 NZ_CP010961.1 Protein Homology CDS 3562192 3563337 . + 0 ID=cds3326;Parent=gene3387;Dbxref=Genbank:WP_010931408.1;Name=WP_010931408.1;gbkey=CDS;product=transporter;protein_id=WP_010931408.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3563412 3564740 . + . ID=gene3388;Name=RD04_RS16945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16945;old_locus_tag=RD04_16905 NZ_CP010961.1 Protein Homology CDS 3563412 3564740 . + 0 ID=cds3327;Parent=gene3388;Dbxref=Genbank:WP_010931407.1;Name=WP_010931407.1;gbkey=CDS;product=amidase;protein_id=WP_010931407.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3564774 3565364 . - . ID=gene3389;Name=RD04_RS16950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16950;old_locus_tag=RD04_16910 NZ_CP010961.1 Protein Homology CDS 3564774 3565364 . - 0 ID=cds3328;Parent=gene3389;Dbxref=Genbank:WP_003815296.1;Name=WP_003815296.1;gbkey=CDS;product=cysteine dioxygenase;protein_id=WP_003815296.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3565678 3566448 . + . ID=gene3390;Name=RD04_RS16955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16955;old_locus_tag=RD04_16915 NZ_CP010961.1 Protein Homology CDS 3565678 3566448 . + 0 ID=cds3329;Parent=gene3390;Dbxref=Genbank:WP_023852623.1;Name=WP_023852623.1;gbkey=CDS;product=transcriptional regulator KdgR;protein_id=WP_023852623.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3566968 3567189 . - . ID=gene3391;Name=RD04_RS16960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16960;old_locus_tag=RD04_16920 NZ_CP010961.1 GeneMarkS+ CDS 3566968 3567189 . - 0 ID=cds3330;Parent=gene3391;Dbxref=Genbank:WP_029444218.1;Name=WP_029444218.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_029444218.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3567227 3567457 . - . ID=gene3392;Name=RD04_RS16965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16965;old_locus_tag=RD04_16925 NZ_CP010961.1 GeneMarkS+ CDS 3567227 3567457 . - 0 ID=cds3331;Parent=gene3392;Dbxref=Genbank:WP_029443757.1;Name=WP_029443757.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_029443757.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3567627 3568352 . + . ID=gene3393;Name=RD04_RS16970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16970;old_locus_tag=RD04_16930 NZ_CP010961.1 Protein Homology CDS 3567627 3568352 . + 0 ID=cds3332;Parent=gene3393;Dbxref=Genbank:WP_010931405.1;Name=WP_010931405.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010931405.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3568359 3569225 . - . ID=gene3394;Name=RD04_RS16975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16975;old_locus_tag=RD04_16935 NZ_CP010961.1 Protein Homology CDS 3568359 3569225 . - 0 ID=cds3333;Parent=gene3394;Dbxref=Genbank:WP_010931404.1;Name=WP_010931404.1;gbkey=CDS;product=copper resistance protein;protein_id=WP_010931404.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3569233 3571013 . - . ID=gene3395;Name=RD04_RS16980;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16980;old_locus_tag=RD04_16940;pseudo=true NZ_CP010961.1 Protein Homology CDS 3569233 3571013 . - 0 ID=cds3334;Parent=gene3395;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3571056 3571553 . - . ID=gene3396;Name=RD04_RS16985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16985;old_locus_tag=RD04_16945 NZ_CP010961.1 Protein Homology CDS 3571056 3571553 . - 0 ID=cds3335;Parent=gene3396;Dbxref=Genbank:WP_029443756.1;Name=WP_029443756.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_029443756.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3571850 3572752 . - . ID=gene3397;Name=RD04_RS16990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS16990;old_locus_tag=RD04_16950 NZ_CP010961.1 GeneMarkS+ CDS 3571850 3572752 . - 0 ID=cds3336;Parent=gene3397;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3573068 3573678 . - . ID=gene3398;Name=RD04_RS16995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS16995;old_locus_tag=RD04_16955;pseudo=true NZ_CP010961.1 Protein Homology CDS 3573068 3573678 . - 0 ID=cds3337;Parent=gene3398;Note=frameshifted;gbkey=CDS;product=cytochrome C;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3573988 3574860 . + . ID=gene3399;Name=RD04_RS17000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17000;old_locus_tag=RD04_16960 NZ_CP010961.1 Protein Homology CDS 3573988 3574860 . + 0 ID=cds3338;Parent=gene3399;Dbxref=Genbank:WP_003815183.1;Name=WP_003815183.1;gbkey=CDS;product=RNase adaptor protein RapZ;protein_id=WP_003815183.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3574857 3575807 . + . ID=gene3400;Name=RD04_RS17005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17005;old_locus_tag=RD04_16965 NZ_CP010961.1 Protein Homology CDS 3574857 3575807 . + 0 ID=cds3339;Parent=gene3400;Dbxref=Genbank:WP_010929963.1;Name=WP_010929963.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010929963.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3575954 3576856 . + . ID=gene3401;Name=RD04_RS17010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17010;old_locus_tag=RD04_16970 NZ_CP010961.1 GeneMarkS+ CDS 3575954 3576856 . + 0 ID=cds3340;Parent=gene3401;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3576961 3577191 . - . ID=gene3402;Name=RD04_RS17015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17015;old_locus_tag=RD04_16975 NZ_CP010961.1 Protein Homology CDS 3576961 3577191 . - 0 ID=cds3341;Parent=gene3402;Dbxref=Genbank:WP_020699695.1;Name=WP_020699695.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_020699695.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3577318 3577707 . - . ID=gene3403;Name=RD04_RS17020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17020;old_locus_tag=RD04_16980 NZ_CP010961.1 Protein Homology CDS 3577318 3577707 . - 0 ID=cds3342;Parent=gene3403;Dbxref=Genbank:WP_019247263.1;Name=WP_019247263.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247263.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3577724 3580105 . - . ID=gene3404;Name=RD04_RS17025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17025;old_locus_tag=RD04_16985 NZ_CP010961.1 Protein Homology CDS 3577724 3580105 . - 0 ID=cds3343;Parent=gene3404;Dbxref=Genbank:WP_010929962.1;Name=WP_010929962.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_010929962.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3580098 3580607 . - . ID=gene3405;Name=RD04_RS17030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17030;old_locus_tag=RD04_16990 NZ_CP010961.1 Protein Homology CDS 3580098 3580607 . - 0 ID=cds3344;Parent=gene3405;Dbxref=Genbank:WP_010929961.1;Name=WP_010929961.1;gbkey=CDS;product=(2Fe-2S)-binding protein;protein_id=WP_010929961.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3580604 3581474 . - . ID=gene3406;Name=RD04_RS17035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS17035;old_locus_tag=RD04_16995;pseudo=true NZ_CP010961.1 Protein Homology CDS 3580604 3581474 . - 0 ID=cds3345;Parent=gene3406;Note=frameshifted;gbkey=CDS;product=molybdopterin dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3581490 3582485 . - . ID=gene3407;Name=RD04_RS17040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17040;old_locus_tag=RD04_17000 NZ_CP010961.1 Protein Homology CDS 3581490 3582485 . - 0 ID=cds3346;Parent=gene3407;Dbxref=Genbank:WP_010929960.1;Name=WP_010929960.1;gbkey=CDS;product=4%2C5-dihydroxyphthalate decarboxylase;protein_id=WP_010929960.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3582504 3583496 . - . ID=gene3408;Name=RD04_RS17045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17045;old_locus_tag=RD04_17005 NZ_CP010961.1 Protein Homology CDS 3582504 3583496 . - 0 ID=cds3347;Parent=gene3408;Dbxref=Genbank:WP_003819054.1;Name=WP_003819054.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003819054.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3583737 3584297 . - . ID=gene3409;Name=RD04_RS17050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17050;old_locus_tag=RD04_17010 NZ_CP010961.1 Protein Homology CDS 3583737 3584297 . - 0 ID=cds3348;Parent=gene3409;Dbxref=Genbank:WP_003807624.1;Name=WP_003807624.1;Note=catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate;gbkey=CDS;product=3-octaprenyl-4-hydroxybenzoate carboxy-lyase;protein_id=WP_003807624.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3584302 3584628 . - . ID=gene3410;Name=RD04_RS17055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17055;old_locus_tag=RD04_17015 NZ_CP010961.1 Protein Homology CDS 3584302 3584628 . - 0 ID=cds3349;Parent=gene3410;Dbxref=Genbank:WP_010929959.1;Name=WP_010929959.1;gbkey=CDS;product=monothiol glutaredoxin%2C Grx4 family;protein_id=WP_010929959.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3584665 3585477 . - . ID=gene3411;Name=RD04_RS17060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17060;old_locus_tag=RD04_17020 NZ_CP010961.1 Protein Homology CDS 3584665 3585477 . - 0 ID=cds3350;Parent=gene3411;Dbxref=Genbank:WP_010929958.1;Name=WP_010929958.1;gbkey=CDS;product=protein-(glutamine-N5) methyltransferase%2C release factor-specific;protein_id=WP_010929958.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3585488 3586570 . - . ID=gene3412;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=RD04_RS17065;old_locus_tag=RD04_17025 NZ_CP010961.1 Protein Homology CDS 3585488 3586570 . - 0 ID=cds3351;Parent=gene3412;Dbxref=Genbank:WP_003807618.1;Name=WP_003807618.1;Note=recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2;gbkey=CDS;gene=prfA;product=peptide chain release factor 1;protein_id=WP_003807618.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3586657 3587931 . - . ID=gene3413;Name=RD04_RS17070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17070;old_locus_tag=RD04_17030 NZ_CP010961.1 Protein Homology CDS 3586657 3587931 . - 0 ID=cds3352;Parent=gene3413;Dbxref=Genbank:WP_010929957.1;Name=WP_010929957.1;gbkey=CDS;product=glutamyl-tRNA reductase;protein_id=WP_010929957.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3588186 3588261 . + . ID=gene3414;Name=RD04_RS17075;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS17075;old_locus_tag=RD04_17035 NZ_CP010961.1 tRNAscan-SE tRNA 3588186 3588261 . + . ID=rna61;Parent=gene3414;anticodon=(pos:3588219..3588221);gbkey=tRNA;product=tRNA-Phe NZ_CP010961.1 tRNAscan-SE exon 3588186 3588261 . + . ID=id67;Parent=rna61;anticodon=(pos:3588219..3588221);gbkey=tRNA;product=tRNA-Phe NZ_CP010961.1 RefSeq gene 3588654 3589604 . - . ID=gene3415;Name=RD04_RS17080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17080;old_locus_tag=RD04_17040 NZ_CP010961.1 Protein Homology CDS 3588654 3589604 . - 0 ID=cds3353;Parent=gene3415;Dbxref=Genbank:WP_010929956.1;Name=WP_010929956.1;gbkey=CDS;product=transposase;protein_id=WP_010929956.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3589703 3592078 . - . ID=gene3416;Name=RD04_RS17085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17085;old_locus_tag=RD04_17045 NZ_CP010961.1 Protein Homology CDS 3589703 3592078 . - 0 ID=cds3354;Parent=gene3416;Dbxref=Genbank:WP_010929955.1;Name=WP_010929955.1;gbkey=CDS;product=biotin transporter BioY;protein_id=WP_010929955.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3592098 3592934 . - . ID=gene3417;Name=RD04_RS17090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17090;old_locus_tag=RD04_17050 NZ_CP010961.1 Protein Homology CDS 3592098 3592934 . - 0 ID=cds3355;Parent=gene3417;Dbxref=Genbank:WP_010929954.1;Name=WP_010929954.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010929954.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3592931 3593728 . - . ID=gene3418;Name=RD04_RS17095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17095;old_locus_tag=RD04_17055 NZ_CP010961.1 Protein Homology CDS 3592931 3593728 . - 0 ID=cds3356;Parent=gene3418;Dbxref=Genbank:WP_010929953.1;Name=WP_010929953.1;gbkey=CDS;product=citryl-CoA lyase;protein_id=WP_010929953.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3593725 3595914 . - . ID=gene3419;Name=RD04_RS17100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17100;old_locus_tag=RD04_17060 NZ_CP010961.1 Protein Homology CDS 3593725 3595914 . - 0 ID=cds3357;Parent=gene3419;Dbxref=Genbank:WP_010929952.1;Name=WP_010929952.1;gbkey=CDS;product=acetyl-CoA synthetase;protein_id=WP_010929952.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3595966 3596952 . - . ID=gene3420;Name=RD04_RS17105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17105;old_locus_tag=RD04_17065 NZ_CP010961.1 Protein Homology CDS 3595966 3596952 . - 0 ID=cds3358;Parent=gene3420;Dbxref=Genbank:WP_010929951.1;Name=WP_010929951.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929951.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3597034 3598836 . - . ID=gene3421;Name=RD04_RS17110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17110;old_locus_tag=RD04_17070 NZ_CP010961.1 Protein Homology CDS 3597034 3598836 . - 0 ID=cds3359;Parent=gene3421;Dbxref=Genbank:WP_010929950.1;Name=WP_010929950.1;gbkey=CDS;product=DNA alkylation response protein;protein_id=WP_010929950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3599094 3601211 . + . ID=gene3422;Name=RD04_RS17115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17115;old_locus_tag=RD04_17075 NZ_CP010961.1 Protein Homology CDS 3599094 3601211 . + 0 ID=cds3360;Parent=gene3422;Dbxref=Genbank:WP_010929949.1;Name=WP_010929949.1;gbkey=CDS;product=crotonase;protein_id=WP_010929949.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3601241 3602425 . + . ID=gene3423;Name=RD04_RS17120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17120;old_locus_tag=RD04_17080 NZ_CP010961.1 Protein Homology CDS 3601241 3602425 . + 0 ID=cds3361;Parent=gene3423;Dbxref=Genbank:WP_010929948.1;Name=WP_010929948.1;gbkey=CDS;product=acetyl-CoA acetyltransferase;protein_id=WP_010929948.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3602447 3602935 . - . ID=gene3424;Name=RD04_RS17125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17125;old_locus_tag=RD04_17085 NZ_CP010961.1 Protein Homology CDS 3602447 3602935 . - 0 ID=cds3362;Parent=gene3424;Dbxref=Genbank:WP_010929947.1;Name=WP_010929947.1;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_010929947.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3603085 3604917 . + . ID=gene3425;Name=RD04_RS17130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17130;old_locus_tag=RD04_17090 NZ_CP010961.1 Protein Homology CDS 3603085 3604917 . + 0 ID=cds3363;Parent=gene3425;Dbxref=Genbank:WP_010929946.1;Name=WP_010929946.1;Note=Catalyzes the first step in hexosamine metabolism%2C converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source;gbkey=CDS;product=glutamine--fructose-6-phosphate aminotransferase;protein_id=WP_010929946.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3605115 3606095 . - . ID=gene3426;Name=RD04_RS17135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17135;old_locus_tag=RD04_17095 NZ_CP010961.1 Protein Homology CDS 3605115 3606095 . - 0 ID=cds3364;Parent=gene3426;Dbxref=Genbank:WP_010929945.1;Name=WP_010929945.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010929945.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3606152 3607171 . - . ID=gene3427;Name=RD04_RS17140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17140;old_locus_tag=RD04_17100 NZ_CP010961.1 Protein Homology CDS 3606152 3607171 . - 0 ID=cds3365;Parent=gene3427;Dbxref=Genbank:WP_010929944.1;Name=WP_010929944.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929944.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3607235 3608128 . - . ID=gene3428;Name=RD04_RS17145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17145;old_locus_tag=RD04_17105 NZ_CP010961.1 Protein Homology CDS 3607235 3608128 . - 0 ID=cds3366;Parent=gene3428;Dbxref=Genbank:WP_003815697.1;Name=WP_003815697.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815697.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3608527 3609306 . + . ID=gene3429;Name=RD04_RS17150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17150;old_locus_tag=RD04_17110 NZ_CP010961.1 Protein Homology CDS 3608527 3609306 . + 0 ID=cds3367;Parent=gene3429;Dbxref=Genbank:WP_010929943.1;Name=WP_010929943.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010929943.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3609306 3611447 . + . ID=gene3430;Name=RD04_RS17155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17155;old_locus_tag=RD04_17115 NZ_CP010961.1 Protein Homology CDS 3609306 3611447 . + 0 ID=cds3368;Parent=gene3430;Dbxref=Genbank:WP_010929942.1;Name=WP_010929942.1;gbkey=CDS;product=acetyl-CoA synthetase;protein_id=WP_010929942.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3611595 3612539 . + . ID=gene3431;Name=RD04_RS17160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17160;old_locus_tag=RD04_17120 NZ_CP010961.1 Protein Homology CDS 3611595 3612539 . + 0 ID=cds3369;Parent=gene3431;Dbxref=Genbank:WP_010929941.1;Name=WP_010929941.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010929941.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3612623 3613606 . - . ID=gene3432;Name=RD04_RS17165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17165;old_locus_tag=RD04_17125 NZ_CP010961.1 Protein Homology CDS 3612623 3613606 . - 0 ID=cds3370;Parent=gene3432;Dbxref=Genbank:WP_010929940.1;Name=WP_010929940.1;gbkey=CDS;product=alcohol dehydrogenase;protein_id=WP_010929940.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3613971 3615245 . + . ID=gene3433;Name=RD04_RS17170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17170;old_locus_tag=RD04_17130 NZ_CP010961.1 Protein Homology CDS 3613971 3615245 . + 0 ID=cds3371;Parent=gene3433;Dbxref=Genbank:WP_003815690.1;Name=WP_003815690.1;gbkey=CDS;product=FAD-dependent oxidoreductase;protein_id=WP_003815690.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3615276 3615704 . + . ID=gene3434;Name=RD04_RS17175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17175;old_locus_tag=RD04_17135 NZ_CP010961.1 Protein Homology CDS 3615276 3615704 . + 0 ID=cds3372;Parent=gene3434;Dbxref=Genbank:WP_010929939.1;Name=WP_010929939.1;gbkey=CDS;product=enamine deaminase RidA;protein_id=WP_010929939.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3615715 3616389 . + . ID=gene3435;Name=RD04_RS17180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17180;old_locus_tag=RD04_17140 NZ_CP010961.1 Protein Homology CDS 3615715 3616389 . + 0 ID=cds3373;Parent=gene3435;Dbxref=Genbank:WP_003815682.1;Name=WP_003815682.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815682.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3616382 3617554 . + . ID=gene3436;Name=RD04_RS17185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17185;old_locus_tag=RD04_17145 NZ_CP010961.1 Protein Homology CDS 3616382 3617554 . + 0 ID=cds3374;Parent=gene3436;Dbxref=Genbank:WP_010929938.1;Name=WP_010929938.1;Note=catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine;gbkey=CDS;product=acetylornithine deacetylase;protein_id=WP_010929938.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3617687 3618706 . + . ID=gene3437;Name=RD04_RS17190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17190;old_locus_tag=RD04_17150 NZ_CP010961.1 Protein Homology CDS 3617687 3618706 . + 0 ID=cds3375;Parent=gene3437;Dbxref=Genbank:WP_010929937.1;Name=WP_010929937.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929937.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3618887 3620077 . + . ID=gene3438;Name=RD04_RS17195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17195;old_locus_tag=RD04_17155 NZ_CP010961.1 Protein Homology CDS 3618887 3620077 . + 0 ID=cds3376;Parent=gene3438;Dbxref=Genbank:WP_010929936.1;Name=WP_010929936.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_010929936.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3620091 3621221 . + . ID=gene3439;Name=RD04_RS17200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17200;old_locus_tag=RD04_17160 NZ_CP010961.1 Protein Homology CDS 3620091 3621221 . + 0 ID=cds3377;Parent=gene3439;Dbxref=Genbank:WP_010929935.1;Name=WP_010929935.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_010929935.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3621265 3622986 . - . ID=gene3440;Name=RD04_RS17205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17205;old_locus_tag=RD04_17165 NZ_CP010961.1 Protein Homology CDS 3621265 3622986 . - 0 ID=cds3378;Parent=gene3440;Dbxref=Genbank:WP_010929934.1;Name=WP_010929934.1;Note=component of the membrane-bound D-lactate oxidase%2C FAD-binding%2C NADH independent;gbkey=CDS;product=D-lactate dehydrogenase;protein_id=WP_010929934.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3623105 3624067 . - . ID=gene3441;Name=RD04_RS17210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17210;old_locus_tag=RD04_17170 NZ_CP010961.1 Protein Homology CDS 3623105 3624067 . - 0 ID=cds3379;Parent=gene3441;Dbxref=Genbank:WP_003815672.1;Name=WP_003815672.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003815672.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3624174 3625145 . + . ID=gene3442;Name=RD04_RS17215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17215;old_locus_tag=RD04_17175 NZ_CP010961.1 Protein Homology CDS 3624174 3625145 . + 0 ID=cds3380;Parent=gene3442;Dbxref=Genbank:WP_003815671.1;Name=WP_003815671.1;gbkey=CDS;product=MFS transporter;protein_id=WP_003815671.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3625764 3626432 . + . ID=gene3443;Name=RD04_RS17220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17220;old_locus_tag=RD04_17180 NZ_CP010961.1 Protein Homology CDS 3625764 3626432 . + 0 ID=cds3381;Parent=gene3443;Dbxref=Genbank:WP_019247835.1;Name=WP_019247835.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247835.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3626429 3626836 . + . ID=gene3444;Name=RD04_RS17225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17225;old_locus_tag=RD04_17185 NZ_CP010961.1 Protein Homology CDS 3626429 3626836 . + 0 ID=cds3382;Parent=gene3444;Dbxref=Genbank:WP_003815668.1;Name=WP_003815668.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815668.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3626833 3627735 . - . ID=gene3445;Name=RD04_RS17230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17230;old_locus_tag=RD04_17190 NZ_CP010961.1 GeneMarkS+ CDS 3626833 3627735 . - 0 ID=cds3383;Parent=gene3445;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3627882 3628784 . - . ID=gene3446;Name=RD04_RS17235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17235;old_locus_tag=RD04_17195 NZ_CP010961.1 GeneMarkS+ CDS 3627882 3628784 . - 0 ID=cds3384;Parent=gene3446;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3628931 3629878 . - . ID=gene3447;Name=RD04_RS17240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17240;old_locus_tag=RD04_17200 NZ_CP010961.1 Protein Homology CDS 3628931 3629878 . - 0 ID=cds3385;Parent=gene3447;Dbxref=Genbank:WP_010929933.1;Name=WP_010929933.1;gbkey=CDS;product=dihydrodipicolinate synthase family protein;protein_id=WP_010929933.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3630085 3630975 . + . ID=gene3448;Name=RD04_RS17245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17245;old_locus_tag=RD04_17205 NZ_CP010961.1 Protein Homology CDS 3630085 3630975 . + 0 ID=cds3386;Parent=gene3448;Dbxref=Genbank:WP_050818137.1;Name=WP_050818137.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_050818137.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3630972 3632120 . - . ID=gene3449;Name=RD04_RS17250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17250;old_locus_tag=RD04_17210 NZ_CP010961.1 Protein Homology CDS 3630972 3632120 . - 0 ID=cds3387;Parent=gene3449;Dbxref=Genbank:WP_010929931.1;Name=WP_010929931.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010929931.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3632128 3633099 . - . ID=gene3450;Name=RD04_RS17255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17255;old_locus_tag=RD04_17215 NZ_CP010961.1 Protein Homology CDS 3632128 3633099 . - 0 ID=cds3388;Parent=gene3450;Dbxref=Genbank:WP_010929930.1;Name=WP_010929930.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929930.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3633137 3634297 . - . ID=gene3451;Name=RD04_RS17260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17260;old_locus_tag=RD04_17220 NZ_CP010961.1 Protein Homology CDS 3633137 3634297 . - 0 ID=cds3389;Parent=gene3451;Dbxref=Genbank:WP_050818136.1;Name=WP_050818136.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_050818136.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3634308 3634700 . - . ID=gene3452;Name=RD04_RS17265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17265;old_locus_tag=RD04_17225 NZ_CP010961.1 Protein Homology CDS 3634308 3634700 . - 0 ID=cds3390;Parent=gene3452;Dbxref=Genbank:WP_003815550.1;Name=WP_003815550.1;gbkey=CDS;product=acyl dehydratase;protein_id=WP_003815550.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3634697 3635092 . - . ID=gene3453;Name=RD04_RS17270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17270;old_locus_tag=RD04_17230 NZ_CP010961.1 Protein Homology CDS 3634697 3635092 . - 0 ID=cds3391;Parent=gene3453;Dbxref=Genbank:WP_010929928.1;Name=WP_010929928.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929928.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3635089 3635490 . - . ID=gene3454;Name=RD04_RS17275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17275;old_locus_tag=RD04_17235 NZ_CP010961.1 Protein Homology CDS 3635089 3635490 . - 0 ID=cds3392;Parent=gene3454;Dbxref=Genbank:WP_003815546.1;Name=WP_003815546.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815546.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3635492 3636646 . - . ID=gene3455;Name=RD04_RS17280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17280;old_locus_tag=RD04_17240 NZ_CP010961.1 Protein Homology CDS 3635492 3636646 . - 0 ID=cds3393;Parent=gene3455;Dbxref=Genbank:WP_010929927.1;Name=WP_010929927.1;gbkey=CDS;product=thiolase;protein_id=WP_010929927.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3636643 3637449 . - . ID=gene3456;Name=RD04_RS17285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17285;old_locus_tag=RD04_17245 NZ_CP010961.1 Protein Homology CDS 3636643 3637449 . - 0 ID=cds3394;Parent=gene3456;Dbxref=Genbank:WP_003817938.1;Name=WP_003817938.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_003817938.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3637446 3638594 . - . ID=gene3457;Name=RD04_RS17290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17290;old_locus_tag=RD04_17250 NZ_CP010961.1 Protein Homology CDS 3637446 3638594 . - 0 ID=cds3395;Parent=gene3457;Dbxref=Genbank:WP_010929926.1;Name=WP_010929926.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_010929926.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3638842 3639834 . + . ID=gene3458;Name=RD04_RS17295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17295;old_locus_tag=RD04_17255 NZ_CP010961.1 Protein Homology CDS 3638842 3639834 . + 0 ID=cds3396;Parent=gene3458;Dbxref=Genbank:WP_010929925.1;Name=WP_010929925.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010929925.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3639836 3642427 . + . ID=gene3459;Name=RD04_RS17300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17300;old_locus_tag=RD04_17260 NZ_CP010961.1 Protein Homology CDS 3639836 3642427 . + 0 ID=cds3397;Parent=gene3459;Dbxref=Genbank:WP_019248668.1;Name=WP_019248668.1;gbkey=CDS;product=acetyl-CoA synthetase;protein_id=WP_019248668.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3642397 3643182 . + . ID=gene3460;Name=RD04_RS17305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17305;old_locus_tag=RD04_17265 NZ_CP010961.1 Protein Homology CDS 3642397 3643182 . + 0 ID=cds3398;Parent=gene3460;Dbxref=Genbank:WP_019247360.1;Name=WP_019247360.1;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_019247360.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3643496 3644467 . + . ID=gene3461;Name=RD04_RS17310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17310;old_locus_tag=RD04_17270 NZ_CP010961.1 Protein Homology CDS 3643496 3644467 . + 0 ID=cds3399;Parent=gene3461;Dbxref=Genbank:WP_010929923.1;Name=WP_010929923.1;gbkey=CDS;product=acetoin:2%2C6-dichlorophenolindophenol oxidoreductase subunit alpha;protein_id=WP_010929923.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3644469 3645443 . + . ID=gene3462;Name=RD04_RS17315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17315;old_locus_tag=RD04_17275 NZ_CP010961.1 Protein Homology CDS 3644469 3645443 . + 0 ID=cds3400;Parent=gene3462;Dbxref=Genbank:WP_010929922.1;Name=WP_010929922.1;gbkey=CDS;product=pyruvate dehydrogenase subunit beta;protein_id=WP_010929922.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3645458 3646243 . + . ID=gene3463;Name=RD04_RS17320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17320;old_locus_tag=RD04_17280 NZ_CP010961.1 Protein Homology CDS 3645458 3646243 . + 0 ID=cds3401;Parent=gene3463;Dbxref=Genbank:WP_010929921.1;Name=WP_010929921.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010929921.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3646247 3647050 . + . ID=gene3464;Name=RD04_RS17325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17325;old_locus_tag=RD04_17285 NZ_CP010961.1 Protein Homology CDS 3646247 3647050 . + 0 ID=cds3402;Parent=gene3464;Dbxref=Genbank:WP_050818135.1;Name=WP_050818135.1;gbkey=CDS;product=2-oxo acid dehydrogenase;protein_id=WP_050818135.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3647074 3648249 . + . ID=gene3465;Name=RD04_RS17330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17330;old_locus_tag=RD04_17290 NZ_CP010961.1 Protein Homology CDS 3647074 3648249 . + 0 ID=cds3403;Parent=gene3465;Dbxref=Genbank:WP_010929920.1;Name=WP_010929920.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_010929920.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3648329 3649822 . + . ID=gene3466;Name=RD04_RS17335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17335;old_locus_tag=RD04_17295 NZ_CP010961.1 Protein Homology CDS 3648329 3649822 . + 0 ID=cds3404;Parent=gene3466;Dbxref=Genbank:WP_010929919.1;Name=WP_010929919.1;Note=activates fatty acids by binding to coenzyme A;gbkey=CDS;product=acyl-CoA synthetase;protein_id=WP_010929919.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3649972 3651240 . + . ID=gene3467;Name=RD04_RS17340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17340;old_locus_tag=RD04_17300 NZ_CP010961.1 Protein Homology CDS 3649972 3651240 . + 0 ID=cds3405;Parent=gene3467;Dbxref=Genbank:WP_019247364.1;Name=WP_019247364.1;gbkey=CDS;product=MmgE/PrpD family protein 4;protein_id=WP_019247364.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3651315 3652523 . + . ID=gene3468;Name=RD04_RS17345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17345;old_locus_tag=RD04_17305 NZ_CP010961.1 Protein Homology CDS 3651315 3652523 . + 0 ID=cds3406;Parent=gene3468;Dbxref=Genbank:WP_010929918.1;Name=WP_010929918.1;gbkey=CDS;product=amino acid-binding protein;protein_id=WP_010929918.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3652593 3653477 . + . ID=gene3469;Name=RD04_RS17350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17350;old_locus_tag=RD04_17310 NZ_CP010961.1 Protein Homology CDS 3652593 3653477 . + 0 ID=cds3407;Parent=gene3469;Dbxref=Genbank:WP_003815515.1;Name=WP_003815515.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_003815515.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3653483 3655297 . + . ID=gene3470;Name=RD04_RS17355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17355;old_locus_tag=RD04_17315 NZ_CP010961.1 Protein Homology CDS 3653483 3655297 . + 0 ID=cds3408;Parent=gene3470;Dbxref=Genbank:WP_019247367.1;Name=WP_019247367.1;gbkey=CDS;product=ABC transporter;protein_id=WP_019247367.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3655290 3656030 . + . ID=gene3471;Name=RD04_RS17360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17360;old_locus_tag=RD04_17320 NZ_CP010961.1 Protein Homology CDS 3655290 3656030 . + 0 ID=cds3409;Parent=gene3471;Dbxref=Genbank:WP_010929916.1;Name=WP_010929916.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010929916.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3656047 3657456 . + . ID=gene3472;Name=RD04_RS17365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17365;old_locus_tag=RD04_17325 NZ_CP010961.1 Protein Homology CDS 3656047 3657456 . + 0 ID=cds3410;Parent=gene3472;Dbxref=Genbank:WP_010929915.1;Name=WP_010929915.1;Note=E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide;gbkey=CDS;product=dihydrolipoyl dehydrogenase;protein_id=WP_010929915.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3657499 3658152 . + . ID=gene3473;Name=RD04_RS17370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17370;old_locus_tag=RD04_17330 NZ_CP010961.1 Protein Homology CDS 3657499 3658152 . + 0 ID=cds3411;Parent=gene3473;Dbxref=Genbank:WP_003817911.1;Name=WP_003817911.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_003817911.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3658206 3659051 . - . ID=gene3474;Name=RD04_RS17375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17375;old_locus_tag=RD04_17335 NZ_CP010961.1 Protein Homology CDS 3658206 3659051 . - 0 ID=cds3412;Parent=gene3474;Dbxref=Genbank:WP_004567900.1;Name=WP_004567900.1;gbkey=CDS;product=amidohydrolase;protein_id=WP_004567900.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3659105 3660064 . - . ID=gene3475;Name=RD04_RS17380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17380;old_locus_tag=RD04_17340 NZ_CP010961.1 Protein Homology CDS 3659105 3660064 . - 0 ID=cds3413;Parent=gene3475;Dbxref=Genbank:WP_003817909.1;Name=WP_003817909.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003817909.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3660140 3661896 . - . ID=gene3476;Name=RD04_RS17385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS17385;old_locus_tag=RD04_17345;pseudo=true NZ_CP010961.1 Protein Homology CDS 3660140 3661896 . - 0 ID=cds3414;Parent=gene3476;Note=frameshifted;gbkey=CDS;product=3-oxosteroid 1-dehydrogenase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3662027 3662833 . + . ID=gene3477;Name=RD04_RS17390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17390;old_locus_tag=RD04_17350 NZ_CP010961.1 Protein Homology CDS 3662027 3662833 . + 0 ID=cds3415;Parent=gene3477;Dbxref=Genbank:WP_003817906.1;Name=WP_003817906.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003817906.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3662893 3663864 . - . ID=gene3478;Name=RD04_RS17395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17395;old_locus_tag=RD04_17355 NZ_CP010961.1 Protein Homology CDS 3662893 3663864 . - 0 ID=cds3416;Parent=gene3478;Dbxref=Genbank:WP_010929913.1;Name=WP_010929913.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929913.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3664083 3664985 . + . ID=gene3479;Name=RD04_RS17400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17400;old_locus_tag=RD04_17360 NZ_CP010961.1 GeneMarkS+ CDS 3664083 3664985 . + 0 ID=cds3417;Parent=gene3479;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3664982 3665776 . - . ID=gene3480;Name=RD04_RS17405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17405;old_locus_tag=RD04_17365 NZ_CP010961.1 Protein Homology CDS 3664982 3665776 . - 0 ID=cds3418;Parent=gene3480;Dbxref=Genbank:WP_010929912.1;Name=WP_010929912.1;gbkey=CDS;product=molybdopterin biosynthesis protein MoeB;protein_id=WP_010929912.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3665773 3667218 . - . ID=gene3481;Name=RD04_RS17410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17410;old_locus_tag=RD04_17370 NZ_CP010961.1 Protein Homology CDS 3665773 3667218 . - 0 ID=cds3419;Parent=gene3481;Dbxref=Genbank:WP_010929911.1;Name=WP_010929911.1;gbkey=CDS;product=peptidase S41;protein_id=WP_010929911.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3667245 3668810 . - . ID=gene3482;Name=RD04_RS17415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17415;old_locus_tag=RD04_17375 NZ_CP010961.1 Protein Homology CDS 3667245 3668810 . - 0 ID=cds3420;Parent=gene3482;Dbxref=Genbank:WP_010929910.1;Name=WP_010929910.1;gbkey=CDS;product=peptidase;protein_id=WP_010929910.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3668814 3669566 . - . ID=gene3483;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=RD04_RS17420;old_locus_tag=RD04_17380 NZ_CP010961.1 Protein Homology CDS 3668814 3669566 . - 0 ID=cds3421;Parent=gene3483;Dbxref=Genbank:WP_003807430.1;Name=WP_003807430.1;Note=2%2C3-bisphosphoglycerate-dependent%3B catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate;gbkey=CDS;gene=gpmA;product=2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_003807430.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3669719 3670141 . + . ID=gene3484;Name=RD04_RS17425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17425;old_locus_tag=RD04_17385 NZ_CP010961.1 Protein Homology CDS 3669719 3670141 . + 0 ID=cds3422;Parent=gene3484;Dbxref=Genbank:WP_010929909.1;Name=WP_010929909.1;gbkey=CDS;product=rhodanese;protein_id=WP_010929909.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3670175 3670435 . + . ID=gene3485;Name=RD04_RS17430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17430;old_locus_tag=RD04_17390 NZ_CP010961.1 Protein Homology CDS 3670175 3670435 . + 0 ID=cds3423;Parent=gene3485;Dbxref=Genbank:WP_010929908.1;Name=WP_010929908.1;gbkey=CDS;product=glutaredoxin 3;protein_id=WP_010929908.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3670489 3671016 . + . ID=gene3486;Name=RD04_RS17435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17435;old_locus_tag=RD04_17395 NZ_CP010961.1 Protein Homology CDS 3670489 3671016 . + 0 ID=cds3424;Parent=gene3486;Dbxref=Genbank:WP_003807422.1;Name=WP_003807422.1;gbkey=CDS;product=protein-export protein SecB;protein_id=WP_003807422.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3671032 3672087 . + . ID=gene3487;Name=RD04_RS17440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17440;old_locus_tag=RD04_17400 NZ_CP010961.1 Protein Homology CDS 3671032 3672087 . + 0 ID=cds3425;Parent=gene3487;Dbxref=Genbank:WP_010929907.1;Name=WP_010929907.1;gbkey=CDS;product=glycerol-3-phosphate dehydrogenase (NAD(P)(+));protein_id=WP_010929907.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3672120 3673139 . + . ID=gene3488;Name=RD04_RS17445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17445;old_locus_tag=RD04_17405 NZ_CP010961.1 Protein Homology CDS 3672120 3673139 . + 0 ID=cds3426;Parent=gene3488;Dbxref=Genbank:WP_047122793.1;Name=WP_047122793.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_047122793.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3673158 3673628 . - . ID=gene3489;Name=RD04_RS17450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17450;old_locus_tag=RD04_17410 NZ_CP010961.1 Protein Homology CDS 3673158 3673628 . - 0 ID=cds3427;Parent=gene3489;Dbxref=Genbank:WP_010929906.1;Name=WP_010929906.1;Note=member of the SPOUT superfamily of RNA methyltransferases;gbkey=CDS;product=tRNA (cytosine(34)-2'-O)-methyltransferase TrmL;protein_id=WP_010929906.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3673703 3674317 . - . ID=gene3490;Name=RD04_RS17455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17455;old_locus_tag=RD04_17415 NZ_CP010961.1 Protein Homology CDS 3673703 3674317 . - 0 ID=cds3428;Parent=gene3490;Dbxref=Genbank:WP_010929905.1;Name=WP_010929905.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929905.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3674471 3675448 . + . ID=gene3491;Name=RD04_RS17460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17460;old_locus_tag=RD04_17420 NZ_CP010961.1 Protein Homology CDS 3674471 3675448 . + 0 ID=cds3429;Parent=gene3491;Dbxref=Genbank:WP_019247635.1;Name=WP_019247635.1;gbkey=CDS;product=methyltransferase;protein_id=WP_019247635.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3675464 3676705 . - . ID=gene3492;Name=RD04_RS17465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17465;old_locus_tag=RD04_17425 NZ_CP010961.1 Protein Homology CDS 3675464 3676705 . - 0 ID=cds3430;Parent=gene3492;Dbxref=Genbank:WP_010929903.1;Name=WP_010929903.1;gbkey=CDS;product=glutamate--cysteine ligase;protein_id=WP_010929903.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3677054 3678712 . - . ID=gene3493;Name=RD04_RS17470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17470;old_locus_tag=RD04_17430 NZ_CP010961.1 Protein Homology CDS 3677054 3678712 . - 0 ID=cds3431;Parent=gene3493;Dbxref=Genbank:WP_010929902.1;Name=WP_010929902.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929902.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3678715 3679344 . - . ID=gene3494;Name=RD04_RS17475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17475;old_locus_tag=RD04_17435 NZ_CP010961.1 Protein Homology CDS 3678715 3679344 . - 0 ID=cds3432;Parent=gene3494;Dbxref=Genbank:WP_010929901.1;Name=WP_010929901.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929901.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3679384 3680157 . - . ID=gene3495;Name=RD04_RS17480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17480;old_locus_tag=RD04_17440 NZ_CP010961.1 Protein Homology CDS 3679384 3680157 . - 0 ID=cds3433;Parent=gene3495;Dbxref=Genbank:WP_003807400.1;Name=WP_003807400.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003807400.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3680154 3680942 . - . ID=gene3496;Name=RD04_RS17485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17485;old_locus_tag=RD04_17445 NZ_CP010961.1 Protein Homology CDS 3680154 3680942 . - 0 ID=cds3434;Parent=gene3496;Dbxref=Genbank:WP_003816301.1;Name=WP_003816301.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003816301.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3680939 3681967 . - . ID=gene3497;Name=RD04_RS17490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17490;old_locus_tag=RD04_17450 NZ_CP010961.1 Protein Homology CDS 3680939 3681967 . - 0 ID=cds3435;Parent=gene3497;Dbxref=Genbank:WP_010929900.1;Name=WP_010929900.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929900.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3682002 3683189 . - . ID=gene3498;Name=RD04_RS17495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17495;old_locus_tag=RD04_17455 NZ_CP010961.1 Protein Homology CDS 3682002 3683189 . - 0 ID=cds3436;Parent=gene3498;Dbxref=Genbank:WP_010929899.1;Name=WP_010929899.1;gbkey=CDS;product=carbon monoxide dehydrogenase;protein_id=WP_010929899.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3683186 3684022 . - . ID=gene3499;Name=RD04_RS17500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17500;old_locus_tag=RD04_17460 NZ_CP010961.1 Protein Homology CDS 3683186 3684022 . - 0 ID=cds3437;Parent=gene3499;Dbxref=Genbank:WP_010929898.1;Name=WP_010929898.1;gbkey=CDS;product=carbon monoxide dehydrogenase;protein_id=WP_010929898.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3684019 3686391 . - . ID=gene3500;Name=RD04_RS17505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17505;old_locus_tag=RD04_17465 NZ_CP010961.1 Protein Homology CDS 3684019 3686391 . - 0 ID=cds3438;Parent=gene3500;Dbxref=Genbank:WP_010929897.1;Name=WP_010929897.1;gbkey=CDS;product=carbon monoxide dehydrogenase;protein_id=WP_010929897.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3686421 3687524 . - . ID=gene3501;Name=RD04_RS17510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17510;old_locus_tag=RD04_17470 NZ_CP010961.1 Protein Homology CDS 3686421 3687524 . - 0 ID=cds3439;Parent=gene3501;Dbxref=Genbank:WP_010929896.1;Name=WP_010929896.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010929896.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3687994 3688305 . + . ID=gene3502;Name=RD04_RS17515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17515;old_locus_tag=RD04_17475 NZ_CP010961.1 Protein Homology CDS 3687994 3688305 . + 0 ID=cds3440;Parent=gene3502;Dbxref=Genbank:WP_003807389.1;Name=WP_003807389.1;gbkey=CDS;product=ferredoxin;protein_id=WP_003807389.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3688308 3689570 . + . ID=gene3503;Name=RD04_RS17520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17520;old_locus_tag=RD04_17480 NZ_CP010961.1 Protein Homology CDS 3688308 3689570 . + 0 ID=cds3441;Parent=gene3503;Dbxref=Genbank:WP_010929895.1;Name=WP_010929895.1;gbkey=CDS;product=ferredoxin reductase;protein_id=WP_010929895.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3689606 3690895 . + . ID=gene3504;Name=RD04_RS17525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17525;old_locus_tag=RD04_17485 NZ_CP010961.1 Protein Homology CDS 3689606 3690895 . + 0 ID=cds3442;Parent=gene3504;Dbxref=Genbank:WP_010929894.1;Name=WP_010929894.1;gbkey=CDS;product=biphenyl 2%2C3-dioxygenase;protein_id=WP_010929894.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3690910 3691425 . + . ID=gene3505;Name=RD04_RS17530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17530;old_locus_tag=RD04_17490 NZ_CP010961.1 Protein Homology CDS 3690910 3691425 . + 0 ID=cds3443;Parent=gene3505;Dbxref=Genbank:WP_003816293.1;Name=WP_003816293.1;gbkey=CDS;product=ring-hydroxylating dioxygenase subunit beta;protein_id=WP_003816293.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3691496 3692113 . - . ID=gene3506;Name=RD04_RS17535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17535;old_locus_tag=RD04_17495 NZ_CP010961.1 Protein Homology CDS 3691496 3692113 . - 0 ID=cds3444;Parent=gene3506;Dbxref=Genbank:WP_010929893.1;Name=WP_010929893.1;gbkey=CDS;product=N-carbamoylsarcosine amidase;protein_id=WP_010929893.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3692129 3693160 . - . ID=gene3507;Name=RD04_RS17540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17540;old_locus_tag=RD04_17500 NZ_CP010961.1 Protein Homology CDS 3692129 3693160 . - 0 ID=cds3445;Parent=gene3507;Dbxref=Genbank:WP_010929892.1;Name=WP_010929892.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929892.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3693188 3694007 . - . ID=gene3508;Name=RD04_RS17545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS17545;old_locus_tag=RD04_17505;pseudo=true NZ_CP010961.1 Protein Homology CDS 3693188 3694007 . - 0 ID=cds3446;Parent=gene3508;Note=frameshifted;gbkey=CDS;product=alpha/beta hydrolase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3694027 3694779 . - . ID=gene3509;Name=RD04_RS17550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17550;old_locus_tag=RD04_17510 NZ_CP010961.1 Protein Homology CDS 3694027 3694779 . - 0 ID=cds3447;Parent=gene3509;Dbxref=Genbank:WP_010929891.1;Name=WP_010929891.1;gbkey=CDS;product=maleate isomerase;protein_id=WP_010929891.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3694805 3695767 . - . ID=gene3510;Name=RD04_RS17555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17555;old_locus_tag=RD04_17515 NZ_CP010961.1 Protein Homology CDS 3694805 3695767 . - 0 ID=cds3448;Parent=gene3510;Dbxref=Genbank:WP_010929890.1;Name=WP_010929890.1;gbkey=CDS;product=amidohydrolase;protein_id=WP_010929890.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3696091 3696741 . - . ID=gene3511;Name=RD04_RS17560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17560;old_locus_tag=RD04_17520 NZ_CP010961.1 Protein Homology CDS 3696091 3696741 . - 0 ID=cds3449;Parent=gene3511;Dbxref=Genbank:WP_023995228.1;Name=WP_023995228.1;gbkey=CDS;product=MobA-like NTP transferase domain protein;protein_id=WP_023995228.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3696824 3697819 . + . ID=gene3512;Name=RD04_RS17565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17565;old_locus_tag=RD04_17525 NZ_CP010961.1 Protein Homology CDS 3696824 3697819 . + 0 ID=cds3450;Parent=gene3512;Dbxref=Genbank:WP_010929888.1;Name=WP_010929888.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929888.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3697827 3698360 . - . ID=gene3513;Name=RD04_RS17570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17570;old_locus_tag=RD04_17530 NZ_CP010961.1 Protein Homology CDS 3697827 3698360 . - 0 ID=cds3451;Parent=gene3513;Dbxref=Genbank:WP_023853412.1;Name=WP_023853412.1;gbkey=CDS;product=MarR family transcriptional regulator;protein_id=WP_023853412.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3698440 3699909 . - . ID=gene3514;Name=RD04_RS17575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17575;old_locus_tag=RD04_17535 NZ_CP010961.1 Protein Homology CDS 3698440 3699909 . - 0 ID=cds3452;Parent=gene3514;Dbxref=Genbank:WP_010929886.1;Name=WP_010929886.1;gbkey=CDS;product=potassium transporter Trk;protein_id=WP_010929886.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3699958 3701337 . - . ID=gene3515;Name=trkA;gbkey=Gene;gene=trkA;gene_biotype=protein_coding;locus_tag=RD04_RS17580;old_locus_tag=RD04_17540 NZ_CP010961.1 Protein Homology CDS 3699958 3701337 . - 0 ID=cds3453;Parent=gene3515;Dbxref=Genbank:WP_003818498.1;Name=WP_003818498.1;Note=involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain;gbkey=CDS;gene=trkA;product=potassium transporter peripheral membrane protein;protein_id=WP_003818498.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3701334 3702023 . - . ID=gene3516;Name=RD04_RS17585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17585;old_locus_tag=RD04_17545 NZ_CP010961.1 Protein Homology CDS 3701334 3702023 . - 0 ID=cds3454;Parent=gene3516;Dbxref=Genbank:WP_010929885.1;Name=WP_010929885.1;gbkey=CDS;product=XRE family transcriptional regulator;protein_id=WP_010929885.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3702034 3704343 . - . ID=gene3517;Name=RD04_RS17590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17590;old_locus_tag=RD04_17550 NZ_CP010961.1 Protein Homology CDS 3702034 3704343 . - 0 ID=cds3455;Parent=gene3517;Dbxref=Genbank:WP_010929884.1;Name=WP_010929884.1;gbkey=CDS;product=two-component sensor histidine kinase;protein_id=WP_010929884.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3704340 3704924 . - . ID=gene3518;Name=RD04_RS17595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17595;old_locus_tag=RD04_17555 NZ_CP010961.1 Protein Homology CDS 3704340 3704924 . - 0 ID=cds3456;Parent=gene3518;Dbxref=Genbank:WP_033446374.1;Name=WP_033446374.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446374.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3704970 3706304 . - . ID=gene3519;Name=RD04_RS17600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17600;old_locus_tag=RD04_17560 NZ_CP010961.1 Protein Homology CDS 3704970 3706304 . - 0 ID=cds3457;Parent=gene3519;Dbxref=Genbank:WP_010929882.1;Name=WP_010929882.1;gbkey=CDS;product=16S rRNA (cytosine(967)-C(5))-methyltransferase;protein_id=WP_010929882.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3706412 3707041 . + . ID=gene3520;Name=RD04_RS17605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17605;old_locus_tag=RD04_17565 NZ_CP010961.1 Protein Homology CDS 3706412 3707041 . + 0 ID=cds3458;Parent=gene3520;Dbxref=Genbank:WP_010929881.1;Name=WP_010929881.1;gbkey=CDS;product=amino acid transporter;protein_id=WP_010929881.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3707087 3707863 . - . ID=gene3521;Name=RD04_RS17610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17610;old_locus_tag=RD04_17570 NZ_CP010961.1 Protein Homology CDS 3707087 3707863 . - 0 ID=cds3459;Parent=gene3521;Dbxref=Genbank:WP_010929880.1;Name=WP_010929880.1;gbkey=CDS;product=L-aspartate dehydrogenase;protein_id=WP_010929880.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3707997 3708845 . + . ID=gene3522;Name=RD04_RS17615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17615;old_locus_tag=RD04_17575 NZ_CP010961.1 Protein Homology CDS 3707997 3708845 . + 0 ID=cds3460;Parent=gene3522;Dbxref=Genbank:WP_010929879.1;Name=WP_010929879.1;gbkey=CDS;product=dioxygenase;protein_id=WP_010929879.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3709028 3709930 . + . ID=gene3523;Name=RD04_RS17620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17620;old_locus_tag=RD04_17580 NZ_CP010961.1 GeneMarkS+ CDS 3709028 3709930 . + 0 ID=cds3461;Parent=gene3523;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3709927 3710562 . - . ID=gene3524;Name=RD04_RS17625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17625;old_locus_tag=RD04_17585 NZ_CP010961.1 Protein Homology CDS 3709927 3710562 . - 0 ID=cds3462;Parent=gene3524;Dbxref=Genbank:WP_010929878.1;Name=WP_010929878.1;gbkey=CDS;product=transporter;protein_id=WP_010929878.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3710692 3711591 . + . ID=gene3525;Name=RD04_RS17630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17630;old_locus_tag=RD04_17590 NZ_CP010961.1 Protein Homology CDS 3710692 3711591 . + 0 ID=cds3463;Parent=gene3525;Dbxref=Genbank:WP_003818466.1;Name=WP_003818466.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003818466.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3711687 3712178 . + . ID=gene3526;Name=RD04_RS17635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17635;old_locus_tag=RD04_17595 NZ_CP010961.1 Protein Homology CDS 3711687 3712178 . + 0 ID=cds3464;Parent=gene3526;Dbxref=Genbank:WP_003807278.1;Name=WP_003807278.1;gbkey=CDS;product=exported protein;protein_id=WP_003807278.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3712225 3713190 . - . ID=gene3527;Name=RD04_RS17640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17640;old_locus_tag=RD04_17600 NZ_CP010961.1 Protein Homology CDS 3712225 3713190 . - 0 ID=cds3465;Parent=gene3527;Dbxref=Genbank:WP_010929877.1;Name=WP_010929877.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010929877.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3713348 3714062 . - . ID=gene3528;Name=RD04_RS17645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS17645;old_locus_tag=RD04_17605;pseudo=true NZ_CP010961.1 Protein Homology CDS 3713348 3714062 . - 0 ID=cds3466;Parent=gene3528;Note=frameshifted;gbkey=CDS;product=YggS family pyridoxal phosphate enzyme;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3714324 3715565 . + . ID=gene3529;Name=RD04_RS17650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17650;old_locus_tag=RD04_17610 NZ_CP010961.1 Protein Homology CDS 3714324 3715565 . + 0 ID=cds3467;Parent=gene3529;Dbxref=Genbank:WP_010929876.1;Name=WP_010929876.1;gbkey=CDS;product=aminotransferase;protein_id=WP_010929876.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3715679 3716695 . + . ID=gene3530;Name=RD04_RS17655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17655;old_locus_tag=RD04_17615 NZ_CP010961.1 Protein Homology CDS 3715679 3716695 . + 0 ID=cds3468;Parent=gene3530;Dbxref=Genbank:WP_003807287.1;Name=WP_003807287.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_003807287.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3716730 3717206 . - . ID=gene3531;Name=RD04_RS17660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17660;old_locus_tag=RD04_17620 NZ_CP010961.1 Protein Homology CDS 3716730 3717206 . - 0 ID=cds3469;Parent=gene3531;Dbxref=Genbank:WP_010929875.1;Name=WP_010929875.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929875.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3717349 3718257 . - . ID=gene3532;Name=RD04_RS17665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17665;old_locus_tag=RD04_17625 NZ_CP010961.1 Protein Homology CDS 3717349 3718257 . - 0 ID=cds3470;Parent=gene3532;Dbxref=Genbank:WP_003807291.1;Name=WP_003807291.1;Note=catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA;gbkey=CDS;product=hydroxymethylglutaryl-CoA lyase;protein_id=WP_003807291.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3718371 3719483 . - . ID=gene3533;Name=RD04_RS17670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17670;old_locus_tag=RD04_17630 NZ_CP010961.1 Protein Homology CDS 3718371 3719483 . - 0 ID=cds3471;Parent=gene3533;Dbxref=Genbank:WP_010929874.1;Name=WP_010929874.1;gbkey=CDS;product=DNA processing protein DprA;protein_id=WP_010929874.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3719584 3720069 . - . ID=gene3534;Name=RD04_RS17675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17675;old_locus_tag=RD04_17635 NZ_CP010961.1 Protein Homology CDS 3719584 3720069 . - 0 ID=cds3472;Parent=gene3534;Dbxref=Genbank:WP_023853429.1;Name=WP_023853429.1;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_023853429.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3720206 3721456 . + . ID=gene3535;Name=RD04_RS17680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17680;old_locus_tag=RD04_17640 NZ_CP010961.1 Protein Homology CDS 3720206 3721456 . + 0 ID=cds3473;Parent=gene3535;Dbxref=Genbank:WP_003818477.1;Name=WP_003818477.1;gbkey=CDS;product=kynureninase;protein_id=WP_003818477.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3721558 3722070 . + . ID=gene3536;Name=RD04_RS17685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17685;old_locus_tag=RD04_17645 NZ_CP010961.1 Protein Homology CDS 3721558 3722070 . + 0 ID=cds3474;Parent=gene3536;Dbxref=Genbank:WP_003807300.1;Name=WP_003807300.1;gbkey=CDS;product=peptide deformylase;protein_id=WP_003807300.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3722169 3723119 . + . ID=gene3537;Name=RD04_RS17690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17690;old_locus_tag=RD04_17650 NZ_CP010961.1 Protein Homology CDS 3722169 3723119 . + 0 ID=cds3475;Parent=gene3537;Dbxref=Genbank:WP_005013747.1;Name=WP_005013747.1;gbkey=CDS;product=transposase;protein_id=WP_005013747.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3723185 3724123 . + . ID=gene3538;Name=RD04_RS17695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17695;old_locus_tag=RD04_17655 NZ_CP010961.1 Protein Homology CDS 3723185 3724123 . + 0 ID=cds3476;Parent=gene3538;Dbxref=Genbank:WP_010929873.1;Name=WP_010929873.1;gbkey=CDS;product=methionyl-tRNA formyltransferase;protein_id=WP_010929873.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3724146 3724772 . - . ID=gene3539;Name=RD04_RS17700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17700;old_locus_tag=RD04_17660 NZ_CP010961.1 Protein Homology CDS 3724146 3724772 . - 0 ID=cds3477;Parent=gene3539;Dbxref=Genbank:WP_010929872.1;Name=WP_010929872.1;gbkey=CDS;product=pyridoxamine 5'-phosphate oxidase;protein_id=WP_010929872.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3724769 3725425 . - . ID=gene3540;Name=RD04_RS17705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17705;old_locus_tag=RD04_17665 NZ_CP010961.1 Protein Homology CDS 3724769 3725425 . - 0 ID=cds3478;Parent=gene3540;Dbxref=Genbank:WP_003818481.1;Name=WP_003818481.1;gbkey=CDS;product=haloacid dehalogenase;protein_id=WP_003818481.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3725422 3726024 . - . ID=gene3541;Name=RD04_RS17710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17710;old_locus_tag=RD04_17670 NZ_CP010961.1 Protein Homology CDS 3725422 3726024 . - 0 ID=cds3479;Parent=gene3541;Dbxref=Genbank:WP_010929871.1;Name=WP_010929871.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929871.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3726031 3726618 . - . ID=gene3542;Name=RD04_RS17715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17715;old_locus_tag=RD04_17675 NZ_CP010961.1 Protein Homology CDS 3726031 3726618 . - 0 ID=cds3480;Parent=gene3542;Dbxref=Genbank:WP_010929870.1;Name=WP_010929870.1;gbkey=CDS;product=lysine decarboxylase;protein_id=WP_010929870.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3726799 3727368 . + . ID=gene3543;Name=RD04_RS17720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17720;old_locus_tag=RD04_17680 NZ_CP010961.1 Protein Homology CDS 3726799 3727368 . + 0 ID=cds3481;Parent=gene3543;Dbxref=Genbank:WP_010929869.1;Name=WP_010929869.1;gbkey=CDS;product=bacterioferritin;protein_id=WP_010929869.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3727439 3728758 . - . ID=gene3544;Name=rimO;gbkey=Gene;gene=rimO;gene_biotype=protein_coding;locus_tag=RD04_RS17725;old_locus_tag=RD04_17685 NZ_CP010961.1 Protein Homology CDS 3727439 3728758 . - 0 ID=cds3482;Parent=gene3544;Dbxref=Genbank:WP_003807313.1;Name=WP_003807313.1;Note=catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit;gbkey=CDS;gene=rimO;product=ribosomal protein S12 methylthiotransferase RimO;protein_id=WP_003807313.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3728865 3729056 . - . ID=gene3545;Name=RD04_RS17730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17730;old_locus_tag=RD04_17690 NZ_CP010961.1 Protein Homology CDS 3728865 3729056 . - 0 ID=cds3483;Parent=gene3545;Dbxref=Genbank:WP_003807315.1;Name=WP_003807315.1;gbkey=CDS;product=4-oxalocrotonate tautomerase;protein_id=WP_003807315.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3729308 3730597 . + . ID=gene3546;Name=RD04_RS17735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17735;old_locus_tag=RD04_17695 NZ_CP010961.1 Protein Homology CDS 3729308 3730597 . + 0 ID=cds3484;Parent=gene3546;Dbxref=Genbank:WP_010929868.1;Name=WP_010929868.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929868.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3730752 3731747 . + . ID=gene3547;Name=RD04_RS17740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17740;old_locus_tag=RD04_17700 NZ_CP010961.1 Protein Homology CDS 3730752 3731747 . + 0 ID=cds3485;Parent=gene3547;Dbxref=Genbank:WP_010929867.1;Name=WP_010929867.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929867.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3731832 3732506 . + . ID=gene3548;Name=RD04_RS17745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17745;old_locus_tag=RD04_17705 NZ_CP010961.1 Protein Homology CDS 3731832 3732506 . + 0 ID=cds3486;Parent=gene3548;Dbxref=Genbank:WP_003807322.1;Name=WP_003807322.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003807322.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3732503 3733405 . - . ID=gene3549;Name=RD04_RS17750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17750;old_locus_tag=RD04_17710 NZ_CP010961.1 GeneMarkS+ CDS 3732503 3733405 . - 0 ID=cds3487;Parent=gene3549;Dbxref=Genbank:WP_023995235.1;Name=WP_023995235.1;gbkey=CDS;product=transposase;protein_id=WP_023995235.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3733615 3734856 . + . ID=gene3550;Name=rocD;gbkey=Gene;gene=rocD;gene_biotype=protein_coding;locus_tag=RD04_RS17755;old_locus_tag=RD04_17715 NZ_CP010961.1 Protein Homology CDS 3733615 3734856 . + 0 ID=cds3488;Parent=gene3550;Dbxref=Genbank:WP_003816336.1;Name=WP_003816336.1;gbkey=CDS;gene=rocD;product=ornithine--oxo-acid transaminase;protein_id=WP_003816336.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3734853 3735797 . + . ID=gene3551;Name=RD04_RS17760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17760;old_locus_tag=RD04_17720 NZ_CP010961.1 Protein Homology CDS 3734853 3735797 . + 0 ID=cds3489;Parent=gene3551;Dbxref=Genbank:WP_010929866.1;Name=WP_010929866.1;gbkey=CDS;product=arginase;protein_id=WP_010929866.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3735964 3736866 . + . ID=gene3552;Name=RD04_RS17765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17765;old_locus_tag=RD04_17725 NZ_CP010961.1 GeneMarkS+ CDS 3735964 3736866 . + 0 ID=cds3490;Parent=gene3552;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3736826 3737755 . - . ID=gene3553;Name=RD04_RS17770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17770;old_locus_tag=RD04_17730 NZ_CP010961.1 Protein Homology CDS 3736826 3737755 . - 0 ID=cds3491;Parent=gene3553;Dbxref=Genbank:WP_023853484.1;Name=WP_023853484.1;gbkey=CDS;product=tripartite tricarboxylate transporter family receptor;protein_id=WP_023853484.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3737809 3738144 . - . ID=gene3554;Name=RD04_RS17775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17775;old_locus_tag=RD04_17735 NZ_CP010961.1 Protein Homology CDS 3737809 3738144 . - 0 ID=cds3492;Parent=gene3554;Dbxref=Genbank:WP_003807759.1;Name=WP_003807759.1;gbkey=CDS;product=alkylhydroperoxidase;protein_id=WP_003807759.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3738189 3738953 . - . ID=gene3555;Name=RD04_RS17780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17780;old_locus_tag=RD04_17740 NZ_CP010961.1 Protein Homology CDS 3738189 3738953 . - 0 ID=cds3493;Parent=gene3555;Dbxref=Genbank:WP_050818147.1;Name=WP_050818147.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_050818147.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3738977 3739717 . - . ID=gene3556;Name=RD04_RS17785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17785;old_locus_tag=RD04_17745 NZ_CP010961.1 Protein Homology CDS 3738977 3739717 . - 0 ID=cds3494;Parent=gene3556;Dbxref=Genbank:WP_010929864.1;Name=WP_010929864.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010929864.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3739725 3741278 . - . ID=gene3557;Name=RD04_RS17790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17790;old_locus_tag=RD04_17750 NZ_CP010961.1 Protein Homology CDS 3739725 3741278 . - 0 ID=cds3495;Parent=gene3557;Dbxref=Genbank:WP_010929863.1;Name=WP_010929863.1;gbkey=CDS;product=substrate-CoA ligase;protein_id=WP_010929863.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3741313 3742290 . - . ID=gene3558;Name=RD04_RS17795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17795;old_locus_tag=RD04_17755 NZ_CP010961.1 Protein Homology CDS 3741313 3742290 . - 0 ID=cds3496;Parent=gene3558;Dbxref=Genbank:WP_010929862.1;Name=WP_010929862.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929862.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3742563 3743144 . - . ID=gene3559;Name=RD04_RS17800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17800;old_locus_tag=RD04_17760 NZ_CP010961.1 Protein Homology CDS 3742563 3743144 . - 0 ID=cds3497;Parent=gene3559;Dbxref=Genbank:WP_023853476.1;Name=WP_023853476.1;gbkey=CDS;product=ureidoglycolate lyase;protein_id=WP_023853476.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3743196 3750329 . - . ID=gene3560;Name=RD04_RS17805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17805;old_locus_tag=RD04_17765 NZ_CP010961.1 Protein Homology CDS 3743196 3750329 . - 0 ID=cds3498;Parent=gene3560;Dbxref=Genbank:WP_023853487.1;Name=WP_023853487.1;gbkey=CDS;product=outer membrane autotransporter barrel domain protein;protein_id=WP_023853487.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3750545 3750676 . - . ID=gene3561;Name=RD04_RS17810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17810;old_locus_tag=RD04_17770 NZ_CP010961.1 Protein Homology CDS 3750545 3750676 . - 0 ID=cds3499;Parent=gene3561;Dbxref=Genbank:WP_003807750.1;Name=WP_003807750.1;gbkey=CDS;product=entericidin;protein_id=WP_003807750.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3750708 3750833 . - . ID=gene3562;Name=RD04_RS17815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17815;old_locus_tag=RD04_17775 NZ_CP010961.1 Protein Homology CDS 3750708 3750833 . - 0 ID=cds3500;Parent=gene3562;Dbxref=Genbank:WP_010929859.1;Name=WP_010929859.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929859.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3750942 3751148 . - . ID=gene3563;Name=RD04_RS17820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17820;old_locus_tag=RD04_17780 NZ_CP010961.1 Protein Homology CDS 3750942 3751148 . - 0 ID=cds3501;Parent=gene3563;Dbxref=Genbank:WP_010929858.1;Name=WP_010929858.1;gbkey=CDS;product=integrase;protein_id=WP_010929858.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3751145 3752060 . - . ID=gene3564;Name=RD04_RS17825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS17825;old_locus_tag=RD04_17785;pseudo=true NZ_CP010961.1 Protein Homology CDS 3751145 3752060 . - 0 ID=cds3502;Parent=gene3564;Note=frameshifted;gbkey=CDS;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3752153 3752812 . + . ID=gene3565;Name=RD04_RS17830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17830;old_locus_tag=RD04_17790 NZ_CP010961.1 Protein Homology CDS 3752153 3752812 . + 0 ID=cds3503;Parent=gene3565;Dbxref=Genbank:WP_010929857.1;Name=WP_010929857.1;gbkey=CDS;product=haloacid dehalogenase;protein_id=WP_010929857.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3752840 3753985 . + . ID=gene3566;Name=RD04_RS17835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17835;old_locus_tag=RD04_17795 NZ_CP010961.1 Protein Homology CDS 3752840 3753985 . + 0 ID=cds3504;Parent=gene3566;Dbxref=Genbank:WP_010929856.1;Name=WP_010929856.1;gbkey=CDS;product=alanine racemase;protein_id=WP_010929856.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3754126 3754461 . + . ID=gene3567;Name=RD04_RS17840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17840;old_locus_tag=RD04_17800 NZ_CP010961.1 Protein Homology CDS 3754126 3754461 . + 0 ID=cds3505;Parent=gene3567;Dbxref=Genbank:WP_003807743.1;Name=WP_003807743.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003807743.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3754536 3755396 . - . ID=gene3568;Name=RD04_RS17845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17845;old_locus_tag=RD04_17805 NZ_CP010961.1 Protein Homology CDS 3754536 3755396 . - 0 ID=cds3506;Parent=gene3568;Dbxref=Genbank:WP_010929855.1;Name=WP_010929855.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929855.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3755660 3756361 . - . ID=gene3569;Name=RD04_RS17850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17850;old_locus_tag=RD04_17810 NZ_CP010961.1 Protein Homology CDS 3755660 3756361 . - 0 ID=cds3507;Parent=gene3569;Dbxref=Genbank:WP_010929854.1;Name=WP_010929854.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_010929854.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3756531 3756926 . + . ID=gene3570;Name=RD04_RS17855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17855;old_locus_tag=RD04_17815 NZ_CP010961.1 Protein Homology CDS 3756531 3756926 . + 0 ID=cds3508;Parent=gene3570;Dbxref=Genbank:WP_003807740.1;Name=WP_003807740.1;gbkey=CDS;product=enamine deaminase RidA;protein_id=WP_003807740.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3757084 3757986 . + . ID=gene3571;Name=RD04_RS17860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17860;old_locus_tag=RD04_17820 NZ_CP010961.1 GeneMarkS+ CDS 3757084 3757986 . + 0 ID=cds3509;Parent=gene3571;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3757997 3758638 . + . ID=gene3572;Name=RD04_RS17865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17865;old_locus_tag=RD04_17825 NZ_CP010961.1 Protein Homology CDS 3757997 3758638 . + 0 ID=cds3510;Parent=gene3572;Dbxref=Genbank:WP_010929852.1;Name=WP_010929852.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929852.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3758805 3759047 . + . ID=gene3573;Name=RD04_RS17870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17870;old_locus_tag=RD04_17830 NZ_CP010961.1 Protein Homology CDS 3758805 3759047 . + 0 ID=cds3511;Parent=gene3573;Dbxref=Genbank:WP_010926414.1;Name=WP_010926414.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010926414.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3759194 3760096 . + . ID=gene3574;Name=RD04_RS17875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17875;old_locus_tag=RD04_17835 NZ_CP010961.1 GeneMarkS+ CDS 3759194 3760096 . + 0 ID=cds3512;Parent=gene3574;Dbxref=Genbank:WP_041166332.1;Name=WP_041166332.1;gbkey=CDS;product=integrase;protein_id=WP_041166332.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3760132 3760599 . + . ID=gene3575;Name=RD04_RS17880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17880;old_locus_tag=RD04_17840 NZ_CP010961.1 Protein Homology CDS 3760132 3760599 . + 0 ID=cds3513;Parent=gene3575;Dbxref=Genbank:WP_010929850.1;Name=WP_010929850.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929850.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3760619 3760830 . + . ID=gene3576;Name=RD04_RS17885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS17885;old_locus_tag=RD04_17845;pseudo=true NZ_CP010961.1 Protein Homology CDS 3760619 3760830 . + 0 ID=cds3514;Parent=gene3576;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3760833 3761210 . + . ID=gene3577;Name=RD04_RS17890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17890;old_locus_tag=RD04_17850 NZ_CP010961.1 Protein Homology CDS 3760833 3761210 . + 0 ID=cds3515;Parent=gene3577;Dbxref=Genbank:WP_010926411.1;Name=WP_010926411.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010926411.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3761207 3761389 . + . ID=gene3578;Name=RD04_RS17895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17895;old_locus_tag=RD04_17855 NZ_CP010961.1 Protein Homology CDS 3761207 3761389 . + 0 ID=cds3516;Parent=gene3578;Dbxref=Genbank:WP_010926410.1;Name=WP_010926410.1;gbkey=CDS;product=membrane protein;protein_id=WP_010926410.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3761393 3762379 . + . ID=gene3579;Name=RD04_RS17900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17900;old_locus_tag=RD04_17860 NZ_CP010961.1 Protein Homology CDS 3761393 3762379 . + 0 ID=cds3517;Parent=gene3579;Dbxref=Genbank:WP_010929849.1;Name=WP_010929849.1;gbkey=CDS;product=DNA recombinase;protein_id=WP_010929849.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3762376 3763023 . + . ID=gene3580;Name=RD04_RS17905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17905;old_locus_tag=RD04_17865 NZ_CP010961.1 Protein Homology CDS 3762376 3763023 . + 0 ID=cds3518;Parent=gene3580;Dbxref=Genbank:WP_010929848.1;Name=WP_010929848.1;gbkey=CDS;product=exonuclease;protein_id=WP_010929848.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3763081 3763608 . + . ID=gene3581;Name=RD04_RS17910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17910;old_locus_tag=RD04_17870 NZ_CP010961.1 Protein Homology CDS 3763081 3763608 . + 0 ID=cds3519;Parent=gene3581;Dbxref=Genbank:WP_010929847.1;Name=WP_010929847.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929847.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3763645 3764829 . + . ID=gene3582;Name=RD04_RS17915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17915;old_locus_tag=RD04_17875 NZ_CP010961.1 Protein Homology CDS 3763645 3764829 . + 0 ID=cds3520;Parent=gene3582;Dbxref=Genbank:WP_019247983.1;Name=WP_019247983.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247983.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3764840 3765181 . + . ID=gene3583;Name=RD04_RS17920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17920;old_locus_tag=RD04_17880 NZ_CP010961.1 Protein Homology CDS 3764840 3765181 . + 0 ID=cds3521;Parent=gene3583;Dbxref=Genbank:WP_010929845.1;Name=WP_010929845.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929845.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3765174 3765293 . + . ID=gene3584;Name=RD04_RS17925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17925;old_locus_tag=RD04_17885 NZ_CP010961.1 Protein Homology CDS 3765174 3765293 . + 0 ID=cds3522;Parent=gene3584;Dbxref=Genbank:WP_010929844.1;Name=WP_010929844.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929844.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3765294 3765494 . + . ID=gene3585;Name=RD04_RS17930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17930;old_locus_tag=RD04_17890 NZ_CP010961.1 Protein Homology CDS 3765294 3765494 . + 0 ID=cds3523;Parent=gene3585;Dbxref=Genbank:WP_010926403.1;Name=WP_010926403.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010926403.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3765491 3766480 . - . ID=gene3586;Name=RD04_RS17935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17935;old_locus_tag=RD04_17895 NZ_CP010961.1 Protein Homology CDS 3765491 3766480 . - 0 ID=cds3524;Parent=gene3586;Dbxref=Genbank:WP_010929843.1;Name=WP_010929843.1;gbkey=CDS;product=integrase;protein_id=WP_010929843.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3766646 3767941 . + . ID=gene3587;Name=RD04_RS17940;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS17940;old_locus_tag=RD04_17900;partial=true;pseudo=true;start_range=.,3766646 NZ_CP010961.1 Protein Homology CDS 3766646 3767941 . + 0 ID=cds3525;Parent=gene3587;Note=incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=histidine kinase;pseudo=true;start_range=.,3766646;transl_table=11 NZ_CP010961.1 RefSeq gene 3767967 3769937 . - . ID=gene3588;Name=RD04_RS17945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17945;old_locus_tag=RD04_17905 NZ_CP010961.1 Protein Homology CDS 3767967 3769937 . - 0 ID=cds3526;Parent=gene3588;Dbxref=Genbank:WP_010929841.1;Name=WP_010929841.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929841.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3770225 3771127 . + . ID=gene3589;Name=RD04_RS17950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17950;old_locus_tag=RD04_17910 NZ_CP010961.1 GeneMarkS+ CDS 3770225 3771127 . + 0 ID=cds3527;Parent=gene3589;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3771228 3771626 . + . ID=gene3590;Name=RD04_RS17955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17955;old_locus_tag=RD04_17915 NZ_CP010961.1 Protein Homology CDS 3771228 3771626 . + 0 ID=cds3528;Parent=gene3590;Dbxref=Genbank:WP_003814626.1;Name=WP_003814626.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814626.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3771635 3772558 . - . ID=gene3591;Name=RD04_RS17960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17960;old_locus_tag=RD04_17920 NZ_CP010961.1 Protein Homology CDS 3771635 3772558 . - 0 ID=cds3529;Parent=gene3591;Dbxref=Genbank:WP_010929840.1;Name=WP_010929840.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010929840.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3772680 3772928 . + . ID=gene3592;Name=RD04_RS17965;end_range=3772928,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS17965;old_locus_tag=RD04_17925;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3772680 3772928 . + 0 ID=cds3530;Parent=gene3592;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=3772928,.;gbkey=CDS;partial=true;product=FMN-dependent NADH-azoreductase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3773016 3773966 . + . ID=gene3593;Name=RD04_RS17970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17970;old_locus_tag=RD04_17930 NZ_CP010961.1 Protein Homology CDS 3773016 3773966 . + 0 ID=cds3531;Parent=gene3593;Dbxref=Genbank:WP_005012067.1;Name=WP_005012067.1;gbkey=CDS;product=transposase;protein_id=WP_005012067.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3774197 3775888 . - . ID=gene3594;Name=RD04_RS17975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17975;old_locus_tag=RD04_17935 NZ_CP010961.1 Protein Homology CDS 3774197 3775888 . - 0 ID=cds3532;Parent=gene3594;Dbxref=Genbank:WP_010927254.1;Name=WP_010927254.1;gbkey=CDS;product=protein translocase component YidC;protein_id=WP_010927254.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3775937 3776209 . - . ID=gene3595;Name=RD04_RS17980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17980;old_locus_tag=RD04_17940 NZ_CP010961.1 Protein Homology CDS 3775937 3776209 . - 0 ID=cds3533;Parent=gene3595;Dbxref=Genbank:WP_003816027.1;Name=WP_003816027.1;gbkey=CDS;product=membrane protein insertion efficiency factor YidD;protein_id=WP_003816027.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3776206 3776577 . - . ID=gene3596;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=RD04_RS17985;old_locus_tag=RD04_17945 NZ_CP010961.1 Protein Homology CDS 3776206 3776577 . - 0 ID=cds3534;Parent=gene3596;Dbxref=Genbank:WP_003816026.1;Name=WP_003816026.1;Note=protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus%3B this enzyme also cleaves other RNA substrates;gbkey=CDS;gene=rnpA;product=ribonuclease P protein component;protein_id=WP_003816026.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3776673 3776807 . - . ID=gene3597;Name=RD04_RS17990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17990;old_locus_tag=RD04_17950 NZ_CP010961.1 Protein Homology CDS 3776673 3776807 . - 0 ID=cds3535;Parent=gene3597;Dbxref=Genbank:WP_003816025.1;Name=WP_003816025.1;gbkey=CDS;product=50S ribosomal protein L34;protein_id=WP_003816025.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3777213 3778622 . + . ID=gene3598;Name=RD04_RS17995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS17995;old_locus_tag=RD04_17955 NZ_CP010961.1 Protein Homology CDS 3777213 3778622 . + 0 ID=cds3536;Parent=gene3598;Dbxref=Genbank:WP_010929554.1;Name=WP_010929554.1;gbkey=CDS;product=chromosomal replication initiator protein DnaA;protein_id=WP_010929554.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3778625 3779734 . + . ID=gene3599;Name=RD04_RS18000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18000;old_locus_tag=RD04_17960 NZ_CP010961.1 Protein Homology CDS 3778625 3779734 . + 0 ID=cds3537;Parent=gene3599;Dbxref=Genbank:WP_010929839.1;Name=WP_010929839.1;gbkey=CDS;product=DNA polymerase III subunit beta;protein_id=WP_010929839.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3779829 3782282 . + . ID=gene3600;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=RD04_RS18005;old_locus_tag=RD04_17965 NZ_CP010961.1 Protein Homology CDS 3779829 3782282 . + 0 ID=cds3538;Parent=gene3600;Dbxref=Genbank:WP_010929838.1;Name=WP_010929838.1;Note=negatively supercoils closed circular double-stranded DNA;gbkey=CDS;gene=gyrB;product=DNA gyrase subunit B;protein_id=WP_010929838.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3782401 3783192 . - . ID=gene3601;Name=RD04_RS18010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18010;old_locus_tag=RD04_17970 NZ_CP010961.1 Protein Homology CDS 3782401 3783192 . - 0 ID=cds3539;Parent=gene3601;Dbxref=Genbank:WP_023853625.1;Name=WP_023853625.1;gbkey=CDS;product=transcriptional regulator%2C IclR family%2C C-terminal domain protein;protein_id=WP_023853625.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3783312 3784739 . + . ID=gene3602;Name=RD04_RS18015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18015;old_locus_tag=RD04_17975 NZ_CP010961.1 Protein Homology CDS 3783312 3784739 . + 0 ID=cds3540;Parent=gene3602;Dbxref=Genbank:WP_010929836.1;Name=WP_010929836.1;gbkey=CDS;product=amidase;protein_id=WP_010929836.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3784778 3785749 . + . ID=gene3603;Name=RD04_RS18020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18020;old_locus_tag=RD04_17980 NZ_CP010961.1 Protein Homology CDS 3784778 3785749 . + 0 ID=cds3541;Parent=gene3603;Dbxref=Genbank:WP_010929835.1;Name=WP_010929835.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010929835.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3785834 3786037 . + . ID=gene3604;Name=RD04_RS18025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18025;old_locus_tag=RD04_17985 NZ_CP010961.1 Protein Homology CDS 3785834 3786037 . + 0 ID=cds3542;Parent=gene3604;Dbxref=Genbank:WP_019247255.1;Name=WP_019247255.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247255.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3786168 3787331 . + . ID=gene3605;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=RD04_RS18030;old_locus_tag=RD04_17990 NZ_CP010961.1 Protein Homology CDS 3786168 3787331 . + 0 ID=cds3543;Parent=gene3605;Dbxref=Genbank:WP_010929834.1;Name=WP_010929834.1;Note=flavin mononucleotide-dependent dehydrogenase%3B functions in aerobic respiration and also has a role in anaerobic nitrate respiration;gbkey=CDS;gene=lldD;product=alpha-hydroxy-acid oxidizing enzyme;protein_id=WP_010929834.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3787419 3788264 . + . ID=gene3606;Name=RD04_RS18035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18035;old_locus_tag=RD04_17995 NZ_CP010961.1 Protein Homology CDS 3787419 3788264 . + 0 ID=cds3544;Parent=gene3606;Dbxref=Genbank:WP_010929833.1;Name=WP_010929833.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_010929833.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3788358 3789725 . + . ID=gene3607;Name=RD04_RS18040;end_range=3789725,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS18040;old_locus_tag=RD04_18000;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3788358 3789725 . + 0 ID=cds3545;Parent=gene3607;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=3789725,.;gbkey=CDS;partial=true;product=peptidase M14;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3789869 3790771 . + . ID=gene3608;Name=RD04_RS18045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18045;old_locus_tag=RD04_18005 NZ_CP010961.1 GeneMarkS+ CDS 3789869 3790771 . + 0 ID=cds3546;Parent=gene3608;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3790768 3791112 . - . ID=gene3609;Name=RD04_RS18050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18050;old_locus_tag=RD04_18010 NZ_CP010961.1 GeneMarkS+ CDS 3790768 3791112 . - 0 ID=cds3547;Parent=gene3609;Dbxref=Genbank:WP_023853381.1;Name=WP_023853381.1;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=WP_023853381.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3791332 3791706 . - . ID=gene3610;Name=RD04_RS18055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18055;old_locus_tag=RD04_18015 NZ_CP010961.1 Protein Homology CDS 3791332 3791706 . - 0 ID=cds3548;Parent=gene3610;Dbxref=Genbank:WP_003818201.1;Name=WP_003818201.1;gbkey=CDS;product=MerR family transcriptional regulator;protein_id=WP_003818201.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3791781 3792839 . + . ID=gene3611;Name=RD04_RS18060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18060;old_locus_tag=RD04_18020 NZ_CP010961.1 Protein Homology CDS 3791781 3792839 . + 0 ID=cds3549;Parent=gene3611;Dbxref=Genbank:WP_010929807.1;Name=WP_010929807.1;gbkey=CDS;product=Zn-dependent hydrolase;protein_id=WP_010929807.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3792863 3793765 . - . ID=gene3612;Name=RD04_RS18065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18065;old_locus_tag=RD04_18025 NZ_CP010961.1 GeneMarkS+ CDS 3792863 3793765 . - 0 ID=cds3550;Parent=gene3612;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3793913 3794749 . + . ID=gene3613;Name=RD04_RS18070;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS18070;old_locus_tag=RD04_18030;partial=true;pseudo=true;start_range=.,3793913 NZ_CP010961.1 Protein Homology CDS 3793913 3794749 . + 0 ID=cds3551;Parent=gene3613;Note=catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA%3B incomplete%3B partial in the middle of a contig%3B missing start;gbkey=CDS;partial=true;product=isovaleryl-CoA dehydrogenase;pseudo=true;start_range=.,3793913;transl_table=11 NZ_CP010961.1 RefSeq gene 3794788 3796647 . + . ID=gene3614;Name=RD04_RS18075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS18075;old_locus_tag=RD04_18035;pseudo=true NZ_CP010961.1 Protein Homology CDS 3794788 3796647 . + 0 ID=cds3552;Parent=gene3614;Note=internal stop;gbkey=CDS;product=bifunctional isocitrate dehydrogenase kinase/phosphatase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3796695 3797864 . + . ID=gene3615;Name=RD04_RS18080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18080;old_locus_tag=RD04_18040 NZ_CP010961.1 Protein Homology CDS 3796695 3797864 . + 0 ID=cds3553;Parent=gene3615;Dbxref=Genbank:WP_010929808.1;Name=WP_010929808.1;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation;gbkey=CDS;product=acetyl-CoA acetyltransferase;protein_id=WP_010929808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3797965 3799572 . + . ID=gene3616;Name=RD04_RS18085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18085;old_locus_tag=RD04_18045 NZ_CP010961.1 Protein Homology CDS 3797965 3799572 . + 0 ID=cds3554;Parent=gene3616;Dbxref=Genbank:WP_003815953.1;Name=WP_003815953.1;gbkey=CDS;product=methylcrotonoyl-CoA carboxylase;protein_id=WP_003815953.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3799619 3801640 . + . ID=gene3617;Name=RD04_RS18090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18090;old_locus_tag=RD04_18050 NZ_CP010961.1 Protein Homology CDS 3799619 3801640 . + 0 ID=cds3555;Parent=gene3617;Dbxref=Genbank:WP_010929810.1;Name=WP_010929810.1;gbkey=CDS;product=3-methylcrotonyl-CoA carboxylase subunit alpha;protein_id=WP_010929810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3801669 3801914 . - . ID=gene3618;Name=RD04_RS18095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18095;old_locus_tag=RD04_18055 NZ_CP010961.1 Protein Homology CDS 3801669 3801914 . - 0 ID=cds3556;Parent=gene3618;Dbxref=Genbank:WP_003815955.1;Name=WP_003815955.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815955.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3801928 3803118 . - . ID=gene3619;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;locus_tag=RD04_RS18100;old_locus_tag=RD04_18060 NZ_CP010961.1 Protein Homology CDS 3801928 3803118 . - 0 ID=cds3557;Parent=gene3619;Dbxref=Genbank:WP_004565905.1;Name=WP_004565905.1;Note=DapATase%3B functions in arginine biosynthetic pathway%3B catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine;gbkey=CDS;gene=argD;product=acetylornithine aminotransferase;protein_id=WP_004565905.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3803314 3804279 . + . ID=gene3620;Name=RD04_RS18105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18105;old_locus_tag=RD04_18065 NZ_CP010961.1 Protein Homology CDS 3803314 3804279 . + 0 ID=cds3558;Parent=gene3620;Dbxref=Genbank:WP_010929811.1;Name=WP_010929811.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010929811.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3804302 3805441 . - . ID=gene3621;Name=RD04_RS18110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18110;old_locus_tag=RD04_18070 NZ_CP010961.1 Protein Homology CDS 3804302 3805441 . - 0 ID=cds3559;Parent=gene3621;Dbxref=Genbank:WP_010929812.1;Name=WP_010929812.1;gbkey=CDS;product=alanine racemase;protein_id=WP_010929812.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3805653 3806615 . + . ID=gene3622;Name=RD04_RS18115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18115;old_locus_tag=RD04_18075 NZ_CP010961.1 Protein Homology CDS 3805653 3806615 . + 0 ID=cds3560;Parent=gene3622;Dbxref=Genbank:WP_010929813.1;Name=WP_010929813.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929813.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3806739 3808763 . + . ID=gene3623;Name=RD04_RS18120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18120;old_locus_tag=RD04_18080 NZ_CP010961.1 Protein Homology CDS 3806739 3808763 . + 0 ID=cds3561;Parent=gene3623;Dbxref=Genbank:WP_010929814.1;Name=WP_010929814.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter permease;protein_id=WP_010929814.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3808960 3811203 . + . ID=gene3624;Name=RD04_RS18125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18125;old_locus_tag=RD04_18085 NZ_CP010961.1 Protein Homology CDS 3808960 3811203 . + 0 ID=cds3562;Parent=gene3624;Dbxref=Genbank:WP_010929815.1;Name=WP_010929815.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_010929815.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3811482 3811940 . + . ID=gene3625;Name=RD04_RS18130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18130;old_locus_tag=RD04_18090 NZ_CP010961.1 Protein Homology CDS 3811482 3811940 . + 0 ID=cds3563;Parent=gene3625;Dbxref=Genbank:WP_003815964.1;Name=WP_003815964.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815964.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3811957 3812881 . + . ID=gene3626;Name=RD04_RS18135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS18135;old_locus_tag=RD04_18095;pseudo=true NZ_CP010961.1 Protein Homology CDS 3811957 3812881 . + 0 ID=cds3564;Parent=gene3626;Note=frameshifted;gbkey=CDS;product=tRNA glutamyl-Q synthetase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3812868 3815489 . - . ID=gene3627;Name=RD04_RS18140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18140;old_locus_tag=RD04_18100 NZ_CP010961.1 Protein Homology CDS 3812868 3815489 . - 0 ID=cds3565;Parent=gene3627;Dbxref=Genbank:WP_010929816.1;Name=WP_010929816.1;gbkey=CDS;product=membrane protein;protein_id=WP_010929816.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3815553 3818180 . + . ID=gene3628;Name=RD04_RS18145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18145;old_locus_tag=RD04_18105 NZ_CP010961.1 Protein Homology CDS 3815553 3818180 . + 0 ID=cds3566;Parent=gene3628;Dbxref=Genbank:WP_010929817.1;Name=WP_010929817.1;Note=decatenates replicating daughter chromosomes;gbkey=CDS;product=DNA topoisomerase III;protein_id=WP_010929817.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3818332 3819396 . + . ID=gene3629;Name=RD04_RS18150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18150;old_locus_tag=RD04_18110 NZ_CP010961.1 Protein Homology CDS 3818332 3819396 . + 0 ID=cds3567;Parent=gene3629;Dbxref=Genbank:WP_010929818.1;Name=WP_010929818.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010929818.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3819396 3820166 . + . ID=gene3630;Name=RD04_RS18155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18155;old_locus_tag=RD04_18115 NZ_CP010961.1 Protein Homology CDS 3819396 3820166 . + 0 ID=cds3568;Parent=gene3630;Dbxref=Genbank:WP_020699616.1;Name=WP_020699616.1;gbkey=CDS;product=sulfate ABC transporter;protein_id=WP_020699616.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3820175 3821008 . + . ID=gene3631;Name=RD04_RS18160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18160;old_locus_tag=RD04_18120 NZ_CP010961.1 Protein Homology CDS 3820175 3821008 . + 0 ID=cds3569;Parent=gene3631;Dbxref=Genbank:WP_010929819.1;Name=WP_010929819.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010929819.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3821021 3821800 . + . ID=gene3632;Name=RD04_RS18165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18165;old_locus_tag=RD04_18125 NZ_CP010961.1 Protein Homology CDS 3821021 3821800 . + 0 ID=cds3570;Parent=gene3632;Dbxref=Genbank:WP_003818225.1;Name=WP_003818225.1;gbkey=CDS;product=gluconate 5-dehydrogenase;protein_id=WP_003818225.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3821874 3823307 . + . ID=gene3633;Name=RD04_RS18170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18170;old_locus_tag=RD04_18130 NZ_CP010961.1 Protein Homology CDS 3821874 3823307 . + 0 ID=cds3571;Parent=gene3633;Dbxref=Genbank:WP_010929820.1;Name=WP_010929820.1;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_010929820.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3823335 3824093 . + . ID=gene3634;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=RD04_RS18175;old_locus_tag=RD04_18135 NZ_CP010961.1 Protein Homology CDS 3823335 3824093 . + 0 ID=cds3572;Parent=gene3634;Dbxref=Genbank:WP_010929821.1;Name=WP_010929821.1;Note=Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis;gbkey=CDS;gene=fabG;product=3-ketoacyl-ACP reductase;protein_id=WP_010929821.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3824149 3825990 . - . ID=gene3635;Name=RD04_RS18180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18180;old_locus_tag=RD04_18140 NZ_CP010961.1 Protein Homology CDS 3824149 3825990 . - 0 ID=cds3573;Parent=gene3635;Dbxref=Genbank:WP_023853380.1;Name=WP_023853380.1;gbkey=CDS;product=acetolactate synthase%2C large subunit%2C biosynthetic type;protein_id=WP_023853380.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3826093 3826569 . + . ID=gene3636;Name=RD04_RS18185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18185;old_locus_tag=RD04_18145 NZ_CP010961.1 Protein Homology CDS 3826093 3826569 . + 0 ID=cds3574;Parent=gene3636;Dbxref=Genbank:WP_010929823.1;Name=WP_010929823.1;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_010929823.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3826586 3827506 . - . ID=gene3637;Name=RD04_RS18190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18190;old_locus_tag=RD04_18150 NZ_CP010961.1 Protein Homology CDS 3826586 3827506 . - 0 ID=cds3575;Parent=gene3637;Dbxref=Genbank:WP_023853391.1;Name=WP_023853391.1;gbkey=CDS;product=bestrophin domain protein;protein_id=WP_023853391.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3827613 3828113 . + . ID=gene3638;Name=RD04_RS18195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18195;old_locus_tag=RD04_18155 NZ_CP010961.1 Protein Homology CDS 3827613 3828113 . + 0 ID=cds3576;Parent=gene3638;Dbxref=Genbank:WP_003818232.1;Name=WP_003818232.1;gbkey=CDS;product=SET domain-containing protein-lysine N-methyltransferase;protein_id=WP_003818232.1;transl_table=11 NZ_CP010961.1 cmsearch binding_site 3828223 3828376 . + . ID=id68;Dbxref=RFAM:RF00050;Note=FMN riboswitch;gbkey=misc_binding NZ_CP010961.1 RefSeq gene 3828487 3829179 . + . ID=gene3639;Name=RD04_RS18200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18200;old_locus_tag=RD04_18160 NZ_CP010961.1 Protein Homology CDS 3828487 3829179 . + 0 ID=cds3577;Parent=gene3639;Dbxref=Genbank:WP_010929826.1;Name=WP_010929826.1;gbkey=CDS;product=3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=WP_010929826.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3829193 3829390 . - . ID=gene3640;Name=RD04_RS18205;end_range=3829390,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS18205;old_locus_tag=RD04_18165;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3829193 3829390 . - 0 ID=cds3578;Parent=gene3640;Note=incomplete%3B partial in the middle of a contig%3B missing start;end_range=3829390,.;gbkey=CDS;partial=true;product=nucleoside 2-deoxyribosyltransferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3829536 3830438 . + . ID=gene3641;Name=RD04_RS18210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18210;old_locus_tag=RD04_18170 NZ_CP010961.1 GeneMarkS+ CDS 3829536 3830438 . + 0 ID=cds3579;Parent=gene3641;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3830435 3834208 . - . ID=gene3642;Name=RD04_RS18215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18215;old_locus_tag=RD04_18175 NZ_CP010961.1 Protein Homology CDS 3830435 3834208 . - 0 ID=cds3580;Parent=gene3642;Dbxref=Genbank:WP_010931556.1;Name=WP_010931556.1;gbkey=CDS;product=5-methyltetrahydrofolate--homocysteine methyltransferase;protein_id=WP_010931556.1;transl_table=11 NZ_CP010961.1 cmsearch binding_site 3834314 3834473 . + . ID=id69;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;gbkey=misc_binding NZ_CP010961.1 RefSeq gene 3834545 3836434 . + . ID=gene3643;Name=RD04_RS18220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18220;old_locus_tag=RD04_18180 NZ_CP010961.1 Protein Homology CDS 3834545 3836434 . + 0 ID=cds3581;Parent=gene3643;Dbxref=Genbank:WP_010931557.1;Name=WP_010931557.1;gbkey=CDS;product=outer membrane protein;protein_id=WP_010931557.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3836446 3837339 . + . ID=gene3644;Name=RD04_RS18225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18225;old_locus_tag=RD04_18185 NZ_CP010961.1 Protein Homology CDS 3836446 3837339 . + 0 ID=cds3582;Parent=gene3644;Dbxref=Genbank:WP_010931558.1;Name=WP_010931558.1;gbkey=CDS;product=cobalamin-binding protein;protein_id=WP_010931558.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3837443 3838240 . + . ID=gene3645;Name=RD04_RS18230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18230;old_locus_tag=RD04_18190 NZ_CP010961.1 Protein Homology CDS 3837443 3838240 . + 0 ID=cds3583;Parent=gene3645;Dbxref=Genbank:WP_010931559.1;Name=WP_010931559.1;gbkey=CDS;product=thiazole synthase;protein_id=WP_010931559.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3838237 3839088 . + . ID=gene3646;Name=RD04_RS18235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18235;old_locus_tag=RD04_18195 NZ_CP010961.1 Protein Homology CDS 3838237 3839088 . + 0 ID=cds3584;Parent=gene3646;Dbxref=Genbank:WP_010931560.1;Name=WP_010931560.1;gbkey=CDS;product=hydroxymethylpyrimidine/phosphomethylpyrimidine kinase;protein_id=WP_010931560.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3839150 3839830 . + . ID=gene3647;Name=RD04_RS18240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18240;old_locus_tag=RD04_18200 NZ_CP010961.1 Protein Homology CDS 3839150 3839830 . + 0 ID=cds3585;Parent=gene3647;Dbxref=Genbank:WP_003817656.1;Name=WP_003817656.1;gbkey=CDS;product=protein-L-isoaspartate O-methyltransferase;protein_id=WP_003817656.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3839858 3840193 . + . ID=gene3648;Name=RD04_RS18245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18245;old_locus_tag=RD04_18205 NZ_CP010961.1 GeneMarkS+ CDS 3839858 3840193 . + 0 ID=cds3586;Parent=gene3648;Dbxref=Genbank:WP_019247189.1;Name=WP_019247189.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247189.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3840194 3841153 . + . ID=gene3649;Name=RD04_RS18250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18250;old_locus_tag=RD04_18210 NZ_CP010961.1 Protein Homology CDS 3840194 3841153 . + 0 ID=cds3587;Parent=gene3649;Dbxref=Genbank:WP_019247190.1;Name=WP_019247190.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247190.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3841174 3841662 . - . ID=gene3650;Name=RD04_RS18255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18255;old_locus_tag=RD04_18215 NZ_CP010961.1 Protein Homology CDS 3841174 3841662 . - 0 ID=cds3588;Parent=gene3650;Dbxref=Genbank:WP_003815102.1;Name=WP_003815102.1;gbkey=CDS;product=D-beta-D-heptose 1-phosphate adenylyltransferase;protein_id=WP_003815102.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3841944 3842960 . + . ID=gene3651;Name=RD04_RS18260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18260;old_locus_tag=RD04_18220 NZ_CP010961.1 Protein Homology CDS 3841944 3842960 . + 0 ID=cds3589;Parent=gene3651;Dbxref=Genbank:WP_010931561.1;Name=WP_010931561.1;gbkey=CDS;product=transposase;protein_id=WP_010931561.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3843152 3844255 . + . ID=gene3652;Name=RD04_RS18265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18265;old_locus_tag=RD04_18225 NZ_CP010961.1 Protein Homology CDS 3843152 3844255 . + 0 ID=cds3590;Parent=gene3652;Dbxref=Genbank:WP_003807735.1;Name=WP_003807735.1;gbkey=CDS;product=AI-2E family transporter;protein_id=WP_003807735.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3844342 3845106 . + . ID=gene3653;Name=RD04_RS18270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18270;old_locus_tag=RD04_18230 NZ_CP010961.1 Protein Homology CDS 3844342 3845106 . + 0 ID=cds3591;Parent=gene3653;Dbxref=Genbank:WP_010931562.1;Name=WP_010931562.1;gbkey=CDS;product=phytanoyl-CoA dioxygenase;protein_id=WP_010931562.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3845228 3846418 . + . ID=gene3654;Name=RD04_RS18275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18275;old_locus_tag=RD04_18235 NZ_CP010961.1 Protein Homology CDS 3845228 3846418 . + 0 ID=cds3592;Parent=gene3654;Dbxref=Genbank:WP_010931563.1;Name=WP_010931563.1;gbkey=CDS;product=voltage-gated potassium channel TrkA;protein_id=WP_010931563.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3846415 3847317 . - . ID=gene3655;Name=RD04_RS18280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18280;old_locus_tag=RD04_18240 NZ_CP010961.1 GeneMarkS+ CDS 3846415 3847317 . - 0 ID=cds3593;Parent=gene3655;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3848123 3848500 . + . ID=gene3656;Name=RD04_RS18285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18285;old_locus_tag=RD04_18245 NZ_CP010961.1 Protein Homology CDS 3848123 3848500 . + 0 ID=cds3594;Parent=gene3656;Dbxref=Genbank:WP_005017264.1;Name=WP_005017264.1;gbkey=CDS;product=30S ribosomal protein S12;protein_id=WP_005017264.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3848664 3849134 . + . ID=gene3657;Name=RD04_RS18290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18290;old_locus_tag=RD04_18250 NZ_CP010961.1 Protein Homology CDS 3848664 3849134 . + 0 ID=cds3595;Parent=gene3657;Dbxref=Genbank:WP_003806901.1;Name=WP_003806901.1;gbkey=CDS;product=30S ribosomal protein S7;protein_id=WP_003806901.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3849152 3851254 . + . ID=gene3658;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=RD04_RS18295;old_locus_tag=RD04_18255 NZ_CP010961.1 Protein Homology CDS 3849152 3851254 . + 0 ID=cds3596;Parent=gene3658;Dbxref=Genbank:WP_010931564.1;Name=WP_010931564.1;Note=EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene;gbkey=CDS;gene=fusA;product=elongation factor G;protein_id=WP_010931564.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3851331 3852521 . + . ID=gene3659;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=RD04_RS18300;old_locus_tag=RD04_18260 NZ_CP010961.1 Protein Homology CDS 3851331 3852521 . + 0 ID=cds3597;Parent=gene3659;Dbxref=Genbank:WP_003806883.1;Name=WP_003806883.1;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;gbkey=CDS;gene=tuf;product=elongation factor Tu;protein_id=WP_003806883.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3852585 3852896 . + . ID=gene3660;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=RD04_RS18305;old_locus_tag=RD04_18265 NZ_CP010961.1 Protein Homology CDS 3852585 3852896 . + 0 ID=cds3598;Parent=gene3660;Dbxref=Genbank:WP_003806903.1;Name=WP_003806903.1;Note=NusE%3B involved in assembly of the 30S subunit%3B in the ribosome%2C this protein is involved in the binding of tRNA%3B in Escherichia coli this protein was also found to be involved in transcription antitermination%3B NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination%3B binding of NusB/S10 to boxA nucleates assembly of the antitermination complex;gbkey=CDS;gene=rpsJ;product=30S ribosomal protein S10;protein_id=WP_003806903.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3853254 3853943 . + . ID=gene3661;Name=RD04_RS18310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18310;old_locus_tag=RD04_18270 NZ_CP010961.1 Protein Homology CDS 3853254 3853943 . + 0 ID=cds3599;Parent=gene3661;Dbxref=Genbank:WP_010925687.1;Name=WP_010925687.1;gbkey=CDS;product=50S ribosomal protein L3;protein_id=WP_010925687.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3853948 3854565 . + . ID=gene3662;Name=RD04_RS18315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18315;old_locus_tag=RD04_18275 NZ_CP010961.1 Protein Homology CDS 3853948 3854565 . + 0 ID=cds3600;Parent=gene3662;Dbxref=Genbank:WP_010931565.1;Name=WP_010931565.1;gbkey=CDS;product=50S ribosomal protein L4;protein_id=WP_010931565.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3854562 3854858 . + . ID=gene3663;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=RD04_RS18320;old_locus_tag=RD04_18280 NZ_CP010961.1 Protein Homology CDS 3854562 3854858 . + 0 ID=cds3601;Parent=gene3663;Dbxref=Genbank:WP_003806906.1;Name=WP_003806906.1;Note=binds third domain of 23S rRNA and protein L29%3B part of exit tunnel;gbkey=CDS;gene=rplW;product=50S ribosomal protein L23;protein_id=WP_003806906.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3854859 3855686 . + . ID=gene3664;Name=RD04_RS18325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18325;old_locus_tag=RD04_18285 NZ_CP010961.1 Protein Homology CDS 3854859 3855686 . + 0 ID=cds3602;Parent=gene3664;Dbxref=Genbank:WP_003806907.1;Name=WP_003806907.1;gbkey=CDS;product=50S ribosomal protein L2;protein_id=WP_003806907.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3855699 3855974 . + . ID=gene3665;Name=RD04_RS18330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18330;old_locus_tag=RD04_18290 NZ_CP010961.1 Protein Homology CDS 3855699 3855974 . + 0 ID=cds3603;Parent=gene3665;Dbxref=Genbank:WP_010931566.1;Name=WP_010931566.1;gbkey=CDS;product=30S ribosomal protein S19;protein_id=WP_010931566.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3855978 3856307 . + . ID=gene3666;Name=RD04_RS18335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18335;old_locus_tag=RD04_18295 NZ_CP010961.1 Protein Homology CDS 3855978 3856307 . + 0 ID=cds3604;Parent=gene3666;Dbxref=Genbank:WP_010925688.1;Name=WP_010925688.1;gbkey=CDS;product=50S ribosomal protein L22;protein_id=WP_010925688.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3856317 3857108 . + . ID=gene3667;Name=RD04_RS18340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18340;old_locus_tag=RD04_18300 NZ_CP010961.1 Protein Homology CDS 3856317 3857108 . + 0 ID=cds3605;Parent=gene3667;Dbxref=Genbank:WP_003806910.1;Name=WP_003806910.1;gbkey=CDS;product=30S ribosomal protein S3;protein_id=WP_003806910.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3857111 3857527 . + . ID=gene3668;Name=RD04_RS18345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18345;old_locus_tag=RD04_18305 NZ_CP010961.1 Protein Homology CDS 3857111 3857527 . + 0 ID=cds3606;Parent=gene3668;Dbxref=Genbank:WP_003806911.1;Name=WP_003806911.1;gbkey=CDS;product=50S ribosomal protein L16;protein_id=WP_003806911.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3857538 3857729 . + . ID=gene3669;Name=RD04_RS18350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18350;old_locus_tag=RD04_18310 NZ_CP010961.1 Protein Homology CDS 3857538 3857729 . + 0 ID=cds3607;Parent=gene3669;Dbxref=Genbank:WP_003806912.1;Name=WP_003806912.1;gbkey=CDS;product=50S ribosomal protein L29;protein_id=WP_003806912.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3857731 3858012 . + . ID=gene3670;Name=RD04_RS18355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18355;old_locus_tag=RD04_18315 NZ_CP010961.1 Protein Homology CDS 3857731 3858012 . + 0 ID=cds3608;Parent=gene3670;Dbxref=Genbank:WP_003806913.1;Name=WP_003806913.1;gbkey=CDS;product=30S ribosomal protein S17;protein_id=WP_003806913.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3858179 3859042 . - . ID=gene3671;Name=RD04_RS18360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18360;old_locus_tag=RD04_18320 NZ_CP010961.1 Protein Homology CDS 3858179 3859042 . - 0 ID=cds3609;Parent=gene3671;Dbxref=Genbank:WP_010931567.1;Name=WP_010931567.1;gbkey=CDS;product=hydrolase;protein_id=WP_010931567.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3859129 3860556 . - . ID=gene3672;Name=RD04_RS18365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18365;old_locus_tag=RD04_18325 NZ_CP010961.1 Protein Homology CDS 3859129 3860556 . - 0 ID=cds3610;Parent=gene3672;Dbxref=Genbank:WP_003806915.1;Name=WP_003806915.1;gbkey=CDS;product=NAD-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_003806915.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3860737 3860925 . - . ID=gene3673;Name=RD04_RS18370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18370;old_locus_tag=RD04_18330 NZ_CP010961.1 Protein Homology CDS 3860737 3860925 . - 0 ID=cds3611;Parent=gene3673;Dbxref=Genbank:WP_019247386.1;Name=WP_019247386.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247386.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3861449 3861817 . + . ID=gene3674;Name=RD04_RS18375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18375;old_locus_tag=RD04_18335 NZ_CP010961.1 Protein Homology CDS 3861449 3861817 . + 0 ID=cds3612;Parent=gene3674;Dbxref=Genbank:WP_003806916.1;Name=WP_003806916.1;gbkey=CDS;product=50S ribosomal protein L14;protein_id=WP_003806916.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3861828 3862148 . + . ID=gene3675;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=RD04_RS18380;old_locus_tag=RD04_18340 NZ_CP010961.1 Protein Homology CDS 3861828 3862148 . + 0 ID=cds3613;Parent=gene3675;Dbxref=Genbank:WP_003806917.1;Name=WP_003806917.1;Note=assembly initiator protein%3B binds to 5' end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel;gbkey=CDS;gene=rplX;product=50S ribosomal protein L24;protein_id=WP_003806917.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3862161 3862700 . + . ID=gene3676;Name=RD04_RS18385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18385;old_locus_tag=RD04_18345 NZ_CP010961.1 Protein Homology CDS 3862161 3862700 . + 0 ID=cds3614;Parent=gene3676;Dbxref=Genbank:WP_003806918.1;Name=WP_003806918.1;gbkey=CDS;product=50S ribosomal protein L5;protein_id=WP_003806918.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3862713 3863018 . + . ID=gene3677;Name=RD04_RS18390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18390;old_locus_tag=RD04_18350 NZ_CP010961.1 Protein Homology CDS 3862713 3863018 . + 0 ID=cds3615;Parent=gene3677;Dbxref=Genbank:WP_003806919.1;Name=WP_003806919.1;gbkey=CDS;product=30S ribosomal protein S14;protein_id=WP_003806919.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3863029 3863424 . + . ID=gene3678;Name=RD04_RS18395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18395;old_locus_tag=RD04_18355 NZ_CP010961.1 Protein Homology CDS 3863029 3863424 . + 0 ID=cds3616;Parent=gene3678;Dbxref=Genbank:WP_003806920.1;Name=WP_003806920.1;gbkey=CDS;product=30S ribosomal protein S8;protein_id=WP_003806920.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3863435 3863968 . + . ID=gene3679;Name=RD04_RS18400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18400;old_locus_tag=RD04_18360 NZ_CP010961.1 Protein Homology CDS 3863435 3863968 . + 0 ID=cds3617;Parent=gene3679;Dbxref=Genbank:WP_010931568.1;Name=WP_010931568.1;gbkey=CDS;product=50S ribosomal protein L6;protein_id=WP_010931568.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3863990 3864352 . + . ID=gene3680;Name=RD04_RS18405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18405;old_locus_tag=RD04_18365 NZ_CP010961.1 Protein Homology CDS 3863990 3864352 . + 0 ID=cds3618;Parent=gene3680;Dbxref=Genbank:WP_003806922.1;Name=WP_003806922.1;gbkey=CDS;product=50S ribosomal protein L18;protein_id=WP_003806922.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3864368 3864892 . + . ID=gene3681;Name=RD04_RS18410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18410;old_locus_tag=RD04_18370 NZ_CP010961.1 Protein Homology CDS 3864368 3864892 . + 0 ID=cds3619;Parent=gene3681;Dbxref=Genbank:WP_003806923.1;Name=WP_003806923.1;gbkey=CDS;product=30S ribosomal protein S5;protein_id=WP_003806923.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3864896 3865081 . + . ID=gene3682;Name=RD04_RS18415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18415;old_locus_tag=RD04_18375 NZ_CP010961.1 Protein Homology CDS 3864896 3865081 . + 0 ID=cds3620;Parent=gene3682;Dbxref=Genbank:WP_003806924.1;Name=WP_003806924.1;gbkey=CDS;product=50S ribosomal protein L30;protein_id=WP_003806924.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3865091 3865531 . + . ID=gene3683;Name=RD04_RS18420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18420;old_locus_tag=RD04_18380 NZ_CP010961.1 Protein Homology CDS 3865091 3865531 . + 0 ID=cds3621;Parent=gene3683;Dbxref=Genbank:WP_003806925.1;Name=WP_003806925.1;gbkey=CDS;product=50S ribosomal protein L15;protein_id=WP_003806925.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3865546 3866871 . + . ID=gene3684;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=RD04_RS18425;old_locus_tag=RD04_18385 NZ_CP010961.1 Protein Homology CDS 3865546 3866871 . + 0 ID=cds3622;Parent=gene3684;Dbxref=Genbank:WP_003806926.1;Name=WP_003806926.1;Note=forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase;gbkey=CDS;gene=secY;product=preprotein translocase subunit SecY;protein_id=WP_003806926.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3866881 3867099 . + . ID=gene3685;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=RD04_RS18430;old_locus_tag=RD04_18390 NZ_CP010961.1 Protein Homology CDS 3866881 3867099 . + 0 ID=cds3623;Parent=gene3685;Dbxref=Genbank:WP_003806927.1;Name=WP_003806927.1;Note=stimulates the activities of the other two initiation factors%2C IF-2 and IF-3;gbkey=CDS;gene=infA;product=translation initiation factor IF-1;protein_id=WP_003806927.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3867134 3867247 . + . ID=gene3686;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=RD04_RS18435;old_locus_tag=RD04_18395 NZ_CP010961.1 Protein Homology CDS 3867134 3867247 . + 0 ID=cds3624;Parent=gene3686;Dbxref=Genbank:WP_003806928.1;Name=WP_003806928.1;Note=smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group have the motif;gbkey=CDS;gene=rpmJ;product=50S ribosomal protein L36;protein_id=WP_003806928.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3867289 3867654 . + . ID=gene3687;Name=RD04_RS18440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18440;old_locus_tag=RD04_18400 NZ_CP010961.1 Protein Homology CDS 3867289 3867654 . + 0 ID=cds3625;Parent=gene3687;Dbxref=Genbank:WP_003806929.1;Name=WP_003806929.1;gbkey=CDS;product=30S ribosomal protein S13;protein_id=WP_003806929.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3867670 3868071 . + . ID=gene3688;Name=RD04_RS18445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18445;old_locus_tag=RD04_18405 NZ_CP010961.1 Protein Homology CDS 3867670 3868071 . + 0 ID=cds3626;Parent=gene3688;Dbxref=Genbank:WP_003806930.1;Name=WP_003806930.1;gbkey=CDS;product=30S ribosomal protein S11;protein_id=WP_003806930.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3868083 3868706 . + . ID=gene3689;Name=RD04_RS18450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18450;old_locus_tag=RD04_18410 NZ_CP010961.1 Protein Homology CDS 3868083 3868706 . + 0 ID=cds3627;Parent=gene3689;Dbxref=Genbank:WP_003806931.1;Name=WP_003806931.1;gbkey=CDS;product=30S ribosomal protein S4;protein_id=WP_003806931.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3868921 3869907 . + . ID=gene3690;Name=RD04_RS18455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18455;old_locus_tag=RD04_18415 NZ_CP010961.1 Protein Homology CDS 3868921 3869907 . + 0 ID=cds3628;Parent=gene3690;Dbxref=Genbank:WP_003806932.1;Name=WP_003806932.1;Note=catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme;gbkey=CDS;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_003806932.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3870066 3870461 . + . ID=gene3691;Name=RD04_RS18460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18460;old_locus_tag=RD04_18420 NZ_CP010961.1 Protein Homology CDS 3870066 3870461 . + 0 ID=cds3629;Parent=gene3691;Dbxref=Genbank:WP_003806934.1;Name=WP_003806934.1;gbkey=CDS;product=50S ribosomal protein L17;protein_id=WP_003806934.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3870515 3871060 . + . ID=gene3692;Name=RD04_RS18465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18465;old_locus_tag=RD04_18425 NZ_CP010961.1 GeneMarkS+ CDS 3870515 3871060 . + 0 ID=cds3630;Parent=gene3692;Dbxref=Genbank:WP_019249622.1;Name=WP_019249622.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019249622.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3871047 3871388 . + . ID=gene3693;Name=RD04_RS18470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18470;old_locus_tag=RD04_18430 NZ_CP010961.1 Protein Homology CDS 3871047 3871388 . + 0 ID=cds3631;Parent=gene3693;Dbxref=Genbank:WP_003806936.1;Name=WP_003806936.1;gbkey=CDS;product=divalent cation tolerance protein;protein_id=WP_003806936.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3871399 3873336 . + . ID=gene3694;Name=RD04_RS18475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18475;old_locus_tag=RD04_18435 NZ_CP010961.1 Protein Homology CDS 3871399 3873336 . + 0 ID=cds3632;Parent=gene3694;Dbxref=Genbank:WP_010931570.1;Name=WP_010931570.1;gbkey=CDS;product=thiol:disulfide interchange protein;protein_id=WP_010931570.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3873521 3874414 . + . ID=gene3695;Name=RD04_RS18480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18480;old_locus_tag=RD04_18440 NZ_CP010961.1 Protein Homology CDS 3873521 3874414 . + 0 ID=cds3633;Parent=gene3695;Dbxref=Genbank:WP_047122794.1;Name=WP_047122794.1;gbkey=CDS;product=membrane protein;protein_id=WP_047122794.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3874411 3875427 . - . ID=gene3696;Name=RD04_RS18485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18485;old_locus_tag=RD04_18445 NZ_CP010961.1 Protein Homology CDS 3874411 3875427 . - 0 ID=cds3634;Parent=gene3696;Dbxref=Genbank:WP_003806939.1;Name=WP_003806939.1;Note=catalyzes the formation of porphobilinogen from 5-aminolevulinate;gbkey=CDS;product=delta-aminolevulinic acid dehydratase;protein_id=WP_003806939.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3875424 3876047 . - . ID=gene3697;Name=RD04_RS18490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18490;old_locus_tag=RD04_18450 NZ_CP010961.1 Protein Homology CDS 3875424 3876047 . - 0 ID=cds3635;Parent=gene3697;Dbxref=Genbank:WP_003806940.1;Name=WP_003806940.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_003806940.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3876292 3876972 . + . ID=gene3698;Name=RD04_RS18495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18495;old_locus_tag=RD04_18455 NZ_CP010961.1 Protein Homology CDS 3876292 3876972 . + 0 ID=cds3636;Parent=gene3698;Dbxref=Genbank:WP_042142635.1;Name=WP_042142635.1;gbkey=CDS;product=cytochrome c;protein_id=WP_042142635.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3877093 3879186 . + . ID=gene3699;Name=RD04_RS18500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18500;old_locus_tag=RD04_18460 NZ_CP010961.1 Protein Homology CDS 3877093 3879186 . + 0 ID=cds3637;Parent=gene3699;Dbxref=Genbank:WP_010931572.1;Name=WP_010931572.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931572.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3879196 3880530 . + . ID=gene3700;Name=RD04_RS18505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18505;old_locus_tag=RD04_18465 NZ_CP010961.1 Protein Homology CDS 3879196 3880530 . + 0 ID=cds3638;Parent=gene3700;Dbxref=Genbank:WP_010931573.1;Name=WP_010931573.1;gbkey=CDS;product=c-type cytochrome biogenesis protein CcsB;protein_id=WP_010931573.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3880601 3881890 . - . ID=gene3701;Name=RD04_RS18510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18510;old_locus_tag=RD04_18470 NZ_CP010961.1 Protein Homology CDS 3880601 3881890 . - 0 ID=cds3639;Parent=gene3701;Dbxref=Genbank:WP_010931574.1;Name=WP_010931574.1;gbkey=CDS;product=diaminopimelate decarboxylase;protein_id=WP_010931574.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3882104 3882433 . + . ID=gene3702;Name=RD04_RS18515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18515;old_locus_tag=RD04_18475 NZ_CP010961.1 Protein Homology CDS 3882104 3882433 . + 0 ID=cds3640;Parent=gene3702;Dbxref=Genbank:WP_010931575.1;Name=WP_010931575.1;gbkey=CDS;product=iron donor protein CyaY;protein_id=WP_010931575.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3882490 3884934 . - . ID=gene3703;Name=RD04_RS18520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18520;old_locus_tag=RD04_18480 NZ_CP010961.1 Protein Homology CDS 3882490 3884934 . - 0 ID=cds3641;Parent=gene3703;Dbxref=Genbank:WP_003806946.1;Name=WP_003806946.1;gbkey=CDS;product=penicillin-binding protein 1A;protein_id=WP_003806946.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3885048 3885683 . + . ID=gene3704;Name=RD04_RS18525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18525;old_locus_tag=RD04_18485 NZ_CP010961.1 Protein Homology CDS 3885048 3885683 . + 0 ID=cds3642;Parent=gene3704;Dbxref=Genbank:WP_003806947.1;Name=WP_003806947.1;gbkey=CDS;product=shikimate kinase;protein_id=WP_003806947.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3885683 3886759 . + . ID=gene3705;Name=RD04_RS18530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18530;old_locus_tag=RD04_18490 NZ_CP010961.1 Protein Homology CDS 3885683 3886759 . + 0 ID=cds3643;Parent=gene3705;Dbxref=Genbank:WP_003806948.1;Name=WP_003806948.1;gbkey=CDS;product=3-dehydroquinate synthase;protein_id=WP_003806948.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3886783 3887910 . + . ID=gene3706;Name=RD04_RS18535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18535;old_locus_tag=RD04_18495 NZ_CP010961.1 Protein Homology CDS 3886783 3887910 . + 0 ID=cds3644;Parent=gene3706;Dbxref=Genbank:WP_023852858.1;Name=WP_023852858.1;Note=dGTPase family type 2 subfamily%3B presumably hydrolyzes dGTP to deoxyguanosine and triphosphate;gbkey=CDS;product=deoxyguanosinetriphosphate triphosphohydrolase;protein_id=WP_023852858.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3888084 3888743 . - . ID=gene3707;Name=RD04_RS18540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18540;old_locus_tag=RD04_18500 NZ_CP010961.1 Protein Homology CDS 3888084 3888743 . - 0 ID=cds3645;Parent=gene3707;Dbxref=Genbank:WP_010925693.1;Name=WP_010925693.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_010925693.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3888799 3891657 . - . ID=gene3708;Name=RD04_RS18545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18545;old_locus_tag=RD04_18505 NZ_CP010961.1 Protein Homology CDS 3888799 3891657 . - 0 ID=cds3646;Parent=gene3708;Dbxref=Genbank:WP_010925694.1;Name=WP_010925694.1;gbkey=CDS;product=excinuclease ABC subunit A;protein_id=WP_010925694.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3891813 3892997 . + . ID=gene3709;Name=RD04_RS18550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18550;old_locus_tag=RD04_18510 NZ_CP010961.1 Protein Homology CDS 3891813 3892997 . + 0 ID=cds3647;Parent=gene3709;Dbxref=Genbank:WP_010931576.1;Name=WP_010931576.1;gbkey=CDS;product=transporter;protein_id=WP_010931576.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3893230 3893730 . + . ID=gene3710;Name=RD04_RS18555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18555;old_locus_tag=RD04_18515 NZ_CP010961.1 Protein Homology CDS 3893230 3893730 . + 0 ID=cds3648;Parent=gene3710;Dbxref=Genbank:WP_003806953.1;Name=WP_003806953.1;gbkey=CDS;product=single-stranded DNA-binding protein;protein_id=WP_003806953.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3893963 3896092 . + . ID=gene3711;Name=RD04_RS18560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18560;old_locus_tag=RD04_18520 NZ_CP010961.1 Protein Homology CDS 3893963 3896092 . + 0 ID=cds3649;Parent=gene3711;Dbxref=Genbank:WP_023995133.1;Name=WP_023995133.1;gbkey=CDS;product=TonB-dependent siderophore receptor;protein_id=WP_023995133.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3896123 3896626 . + . ID=gene3712;Name=RD04_RS18565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18565;old_locus_tag=RD04_18525 NZ_CP010961.1 Protein Homology CDS 3896123 3896626 . + 0 ID=cds3650;Parent=gene3712;Dbxref=Genbank:WP_023852866.1;Name=WP_023852866.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023852866.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3896645 3896992 . + . ID=gene3713;Name=RD04_RS18570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18570;old_locus_tag=RD04_18530 NZ_CP010961.1 Protein Homology CDS 3896645 3896992 . + 0 ID=cds3651;Parent=gene3713;Dbxref=Genbank:WP_019247383.1;Name=WP_019247383.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247383.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3896989 3897333 . + . ID=gene3714;Name=RD04_RS18575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18575;old_locus_tag=RD04_18535 NZ_CP010961.1 Protein Homology CDS 3896989 3897333 . + 0 ID=cds3652;Parent=gene3714;Dbxref=Genbank:WP_019247382.1;Name=WP_019247382.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_019247382.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3897362 3898378 . + . ID=gene3715;Name=RD04_RS18580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18580;old_locus_tag=RD04_18540 NZ_CP010961.1 Protein Homology CDS 3897362 3898378 . + 0 ID=cds3653;Parent=gene3715;Dbxref=Genbank:WP_003806959.1;Name=WP_003806959.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003806959.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3898432 3899226 . + . ID=gene3716;Name=RD04_RS18585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18585;old_locus_tag=RD04_18545 NZ_CP010961.1 Protein Homology CDS 3898432 3899226 . + 0 ID=cds3654;Parent=gene3716;Dbxref=Genbank:WP_003806961.1;Name=WP_003806961.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_003806961.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3899331 3900164 . - . ID=gene3717;Name=RD04_RS18590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18590;old_locus_tag=RD04_18550 NZ_CP010961.1 Protein Homology CDS 3899331 3900164 . - 0 ID=cds3655;Parent=gene3717;Dbxref=Genbank:WP_010931579.1;Name=WP_010931579.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_010931579.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3900444 3901934 . + . ID=gene3718;Name=RD04_RS18595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18595;old_locus_tag=RD04_18555 NZ_CP010961.1 Protein Homology CDS 3900444 3901934 . + 0 ID=cds3656;Parent=gene3718;Dbxref=Genbank:WP_010931580.1;Name=WP_010931580.1;gbkey=CDS;product=ethylammeline chlorohydrolase;protein_id=WP_010931580.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3901973 3902959 . + . ID=gene3719;Name=RD04_RS18600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18600;old_locus_tag=RD04_18560 NZ_CP010961.1 Protein Homology CDS 3901973 3902959 . + 0 ID=cds3657;Parent=gene3719;Dbxref=Genbank:WP_003806967.1;Name=WP_003806967.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003806967.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3903112 3904257 . + . ID=gene3720;Name=RD04_RS18605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18605;old_locus_tag=RD04_18565 NZ_CP010961.1 Protein Homology CDS 3903112 3904257 . + 0 ID=cds3658;Parent=gene3720;Dbxref=Genbank:WP_004565946.1;Name=WP_004565946.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_004565946.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3904264 3905082 . + . ID=gene3721;Name=RD04_RS18610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18610;old_locus_tag=RD04_18570 NZ_CP010961.1 Protein Homology CDS 3904264 3905082 . + 0 ID=cds3659;Parent=gene3721;Dbxref=Genbank:WP_010931581.1;Name=WP_010931581.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931581.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3905241 3906212 . + . ID=gene3722;Name=RD04_RS18615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18615;old_locus_tag=RD04_18575 NZ_CP010961.1 Protein Homology CDS 3905241 3906212 . + 0 ID=cds3660;Parent=gene3722;Dbxref=Genbank:WP_003806971.1;Name=WP_003806971.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_003806971.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3906238 3907239 . + . ID=gene3723;Name=RD04_RS18620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18620;old_locus_tag=RD04_18580 NZ_CP010961.1 Protein Homology CDS 3906238 3907239 . + 0 ID=cds3661;Parent=gene3723;Dbxref=Genbank:WP_003806973.1;Name=WP_003806973.1;gbkey=CDS;product=taurine ABC transporter substrate-binding protein;protein_id=WP_003806973.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3907303 3908073 . + . ID=gene3724;Name=RD04_RS18625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18625;old_locus_tag=RD04_18585 NZ_CP010961.1 Protein Homology CDS 3907303 3908073 . + 0 ID=cds3662;Parent=gene3724;Dbxref=Genbank:WP_010931583.1;Name=WP_010931583.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931583.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3908061 3908852 . + . ID=gene3725;Name=RD04_RS18630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18630;old_locus_tag=RD04_18590 NZ_CP010961.1 Protein Homology CDS 3908061 3908852 . + 0 ID=cds3663;Parent=gene3725;Dbxref=Genbank:WP_003818330.1;Name=WP_003818330.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_003818330.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3908880 3910196 . + . ID=gene3726;Name=RD04_RS18635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18635;old_locus_tag=RD04_18595 NZ_CP010961.1 Protein Homology CDS 3908880 3910196 . + 0 ID=cds3664;Parent=gene3726;Dbxref=Genbank:WP_010931585.1;Name=WP_010931585.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931585.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3910321 3910461 . - . ID=gene3727;Name=RD04_RS18640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18640;old_locus_tag=RD04_18600 NZ_CP010961.1 Protein Homology CDS 3910321 3910461 . - 0 ID=cds3665;Parent=gene3727;Dbxref=Genbank:WP_010931586.1;Name=WP_010931586.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931586.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3910518 3911162 . - . ID=gene3728;Name=RD04_RS18645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18645;old_locus_tag=RD04_18605 NZ_CP010961.1 Protein Homology CDS 3910518 3911162 . - 0 ID=cds3666;Parent=gene3728;Dbxref=Genbank:WP_003818333.1;Name=WP_003818333.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_003818333.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3911198 3913375 . - . ID=gene3729;Name=RD04_RS18650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18650;old_locus_tag=RD04_18610 NZ_CP010961.1 Protein Homology CDS 3911198 3913375 . - 0 ID=cds3667;Parent=gene3729;Dbxref=Genbank:WP_010931587.1;Name=WP_010931587.1;Note=catalyzes the formation of malate from glyoxylate and acetyl-CoA;gbkey=CDS;product=malate synthase G;protein_id=WP_010931587.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3913619 3914384 . + . ID=gene3730;Name=RD04_RS18655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS18655;old_locus_tag=RD04_18615;pseudo=true NZ_CP010961.1 Protein Homology CDS 3913619 3914384 . + 0 ID=cds3668;Parent=gene3730;Note=frameshifted;gbkey=CDS;product=transcriptional regulator;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3914381 3915508 . - . ID=gene3731;Name=RD04_RS18660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18660;old_locus_tag=RD04_18620 NZ_CP010961.1 Protein Homology CDS 3914381 3915508 . - 0 ID=cds3669;Parent=gene3731;Dbxref=Genbank:WP_003818337.1;Name=WP_003818337.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_003818337.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3915734 3915907 . - . ID=gene3732;Name=RD04_RS18665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18665;old_locus_tag=RD04_18625 NZ_CP010961.1 Protein Homology CDS 3915734 3915907 . - 0 ID=cds3670;Parent=gene3732;Dbxref=Genbank:WP_010931588.1;Name=WP_010931588.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931588.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3916173 3917099 . - . ID=gene3733;Name=RD04_RS18670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18670;old_locus_tag=RD04_18630 NZ_CP010961.1 Protein Homology CDS 3916173 3917099 . - 0 ID=cds3671;Parent=gene3733;Dbxref=Genbank:WP_010931589.1;Name=WP_010931589.1;gbkey=CDS;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_010931589.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3917186 3918385 . - . ID=gene3734;Name=RD04_RS18675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18675;old_locus_tag=RD04_18635 NZ_CP010961.1 Protein Homology CDS 3917186 3918385 . - 0 ID=cds3672;Parent=gene3734;Dbxref=Genbank:WP_010931590.1;Name=WP_010931590.1;gbkey=CDS;product=aminotransferase;protein_id=WP_010931590.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3918524 3919018 . + . ID=gene3735;Name=RD04_RS18680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18680;old_locus_tag=RD04_18640 NZ_CP010961.1 Protein Homology CDS 3918524 3919018 . + 0 ID=cds3673;Parent=gene3735;Dbxref=Genbank:WP_010931591.1;Name=WP_010931591.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_010931591.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3919306 3920133 . + . ID=gene3736;Name=RD04_RS18685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18685;old_locus_tag=RD04_18645 NZ_CP010961.1 Protein Homology CDS 3919306 3920133 . + 0 ID=cds3674;Parent=gene3736;Dbxref=Genbank:WP_023852861.1;Name=WP_023852861.1;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_023852861.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3920404 3921360 . - . ID=gene3737;Name=RD04_RS18690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS18690;old_locus_tag=RD04_18650;partial=true;pseudo=true;start_range=.,3920404 NZ_CP010961.1 Protein Homology CDS 3920404 3921360 . - 0 ID=cds3675;Parent=gene3737;Note=incomplete%3B partial in the middle of a contig%3B missing stop;gbkey=CDS;partial=true;product=integrase;pseudo=true;start_range=.,3920404;transl_table=11 NZ_CP010961.1 RefSeq gene 3921588 3922037 . - . ID=gene3738;Name=RD04_RS18695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18695;old_locus_tag=RD04_18655 NZ_CP010961.1 Protein Homology CDS 3921588 3922037 . - 0 ID=cds3676;Parent=gene3738;Dbxref=Genbank:WP_023853464.1;Name=WP_023853464.1;gbkey=CDS;product=peptidoglycan-binding protein LysM;protein_id=WP_023853464.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3922179 3922379 . - . ID=gene3739;Name=RD04_RS18700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18700;old_locus_tag=RD04_18660 NZ_CP010961.1 Protein Homology CDS 3922179 3922379 . - 0 ID=cds3677;Parent=gene3739;Dbxref=Genbank:WP_003807812.1;Name=WP_003807812.1;gbkey=CDS;product=thiamine biosynthesis protein ThiS;protein_id=WP_003807812.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3922390 3923337 . - . ID=gene3740;Name=RD04_RS18705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18705;old_locus_tag=RD04_18665 NZ_CP010961.1 Protein Homology CDS 3922390 3923337 . - 0 ID=cds3678;Parent=gene3740;Dbxref=Genbank:WP_010931593.1;Name=WP_010931593.1;gbkey=CDS;product=prolyl aminopeptidase;protein_id=WP_010931593.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3923338 3924102 . - . ID=gene3741;Name=RD04_RS18710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18710;old_locus_tag=RD04_18670 NZ_CP010961.1 Protein Homology CDS 3923338 3924102 . - 0 ID=cds3679;Parent=gene3741;Dbxref=Genbank:WP_010931594.1;Name=WP_010931594.1;gbkey=CDS;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=WP_010931594.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3924196 3925095 . + . ID=gene3742;Name=RD04_RS18715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18715;old_locus_tag=RD04_18675 NZ_CP010961.1 Protein Homology CDS 3924196 3925095 . + 0 ID=cds3680;Parent=gene3742;Dbxref=Genbank:WP_010931595.1;Name=WP_010931595.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931595.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3925211 3926406 . + . ID=gene3743;Name=RD04_RS18720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS18720;old_locus_tag=RD04_18680;pseudo=true NZ_CP010961.1 Protein Homology CDS 3925211 3926406 . + 0 ID=cds3681;Parent=gene3743;Note=frameshifted;gbkey=CDS;product=formyl-CoA transferase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3926403 3927350 . + . ID=gene3744;Name=RD04_RS18725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18725;old_locus_tag=RD04_18685 NZ_CP010961.1 Protein Homology CDS 3926403 3927350 . + 0 ID=cds3682;Parent=gene3744;Dbxref=Genbank:WP_010931596.1;Name=WP_010931596.1;gbkey=CDS;product=hydroxymethylglutaryl-CoA lyase;protein_id=WP_010931596.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3927398 3928237 . + . ID=gene3745;Name=RD04_RS18730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18730;old_locus_tag=RD04_18690 NZ_CP010961.1 Protein Homology CDS 3927398 3928237 . + 0 ID=cds3683;Parent=gene3745;Dbxref=Genbank:WP_010931597.1;Name=WP_010931597.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931597.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3928335 3928408 . + . ID=gene3746;Name=RD04_RS18735;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS18735;old_locus_tag=RD04_18695 NZ_CP010961.1 tRNAscan-SE tRNA 3928335 3928408 . + . ID=rna62;Parent=gene3746;anticodon=(pos:3928367..3928369);gbkey=tRNA;product=tRNA-Gly NZ_CP010961.1 tRNAscan-SE exon 3928335 3928408 . + . ID=id70;Parent=rna62;anticodon=(pos:3928367..3928369);gbkey=tRNA;product=tRNA-Gly NZ_CP010961.1 RefSeq gene 3928951 3929853 . - . ID=gene3747;Name=RD04_RS18740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18740;old_locus_tag=RD04_18700 NZ_CP010961.1 GeneMarkS+ CDS 3928951 3929853 . - 0 ID=cds3684;Parent=gene3747;Dbxref=Genbank:WP_023997950.1;Name=WP_023997950.1;gbkey=CDS;product=transposase;protein_id=WP_023997950.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3930040 3930870 . + . ID=gene3748;Name=RD04_RS18745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18745;old_locus_tag=RD04_18705 NZ_CP010961.1 Protein Homology CDS 3930040 3930870 . + 0 ID=cds3685;Parent=gene3748;Dbxref=Genbank:WP_010931598.1;Name=WP_010931598.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_010931598.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3930883 3931875 . - . ID=gene3749;Name=RD04_RS18750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18750;old_locus_tag=RD04_18710 NZ_CP010961.1 Protein Homology CDS 3930883 3931875 . - 0 ID=cds3686;Parent=gene3749;Dbxref=Genbank:WP_010931599.1;Name=WP_010931599.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931599.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3932056 3933105 . - . ID=gene3750;Name=RD04_RS18755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18755;old_locus_tag=RD04_18715 NZ_CP010961.1 Protein Homology CDS 3932056 3933105 . - 0 ID=cds3687;Parent=gene3750;Dbxref=Genbank:WP_010931600.1;Name=WP_010931600.1;gbkey=CDS;product=taurine ABC transporter substrate-binding protein;protein_id=WP_010931600.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3933159 3933950 . - . ID=gene3751;Name=RD04_RS18760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18760;old_locus_tag=RD04_18720 NZ_CP010961.1 Protein Homology CDS 3933159 3933950 . - 0 ID=cds3688;Parent=gene3751;Dbxref=Genbank:WP_003814799.1;Name=WP_003814799.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_003814799.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3934012 3934809 . - . ID=gene3752;Name=RD04_RS18765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18765;old_locus_tag=RD04_18725 NZ_CP010961.1 Protein Homology CDS 3934012 3934809 . - 0 ID=cds3689;Parent=gene3752;Dbxref=Genbank:WP_010931601.1;Name=WP_010931601.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931601.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3934806 3935858 . - . ID=gene3753;Name=RD04_RS18770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18770;old_locus_tag=RD04_18730 NZ_CP010961.1 Protein Homology CDS 3934806 3935858 . - 0 ID=cds3690;Parent=gene3753;Dbxref=Genbank:WP_010931602.1;Name=WP_010931602.1;gbkey=CDS;product=taurine ABC transporter substrate-binding protein;protein_id=WP_010931602.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3935886 3936755 . - . ID=gene3754;Name=RD04_RS18775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18775;old_locus_tag=RD04_18735 NZ_CP010961.1 Protein Homology CDS 3935886 3936755 . - 0 ID=cds3691;Parent=gene3754;Dbxref=Genbank:WP_010931603.1;Name=WP_010931603.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931603.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3937275 3938048 . - . ID=gene3755;Name=RD04_RS18780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18780;old_locus_tag=RD04_18740 NZ_CP010961.1 Protein Homology CDS 3937275 3938048 . - 0 ID=cds3692;Parent=gene3755;Dbxref=Genbank:WP_010931604.1;Name=WP_010931604.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010931604.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3938050 3939015 . - . ID=gene3756;Name=RD04_RS18785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18785;old_locus_tag=RD04_18745 NZ_CP010961.1 Protein Homology CDS 3938050 3939015 . - 0 ID=cds3693;Parent=gene3756;Dbxref=Genbank:WP_010931605.1;Name=WP_010931605.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931605.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3939068 3940072 . - . ID=gene3757;Name=RD04_RS18790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18790;old_locus_tag=RD04_18750 NZ_CP010961.1 Protein Homology CDS 3939068 3940072 . - 0 ID=cds3694;Parent=gene3757;Dbxref=Genbank:WP_010931606.1;Name=WP_010931606.1;gbkey=CDS;product=NADPH:quinone reductase;protein_id=WP_010931606.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3940069 3941262 . - . ID=gene3758;Name=RD04_RS18795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18795;old_locus_tag=RD04_18755 NZ_CP010961.1 Protein Homology CDS 3940069 3941262 . - 0 ID=cds3695;Parent=gene3758;Dbxref=Genbank:WP_010931607.1;Name=WP_010931607.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010931607.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3941640 3942266 . + . ID=gene3759;Name=RD04_RS18800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18800;old_locus_tag=RD04_18760 NZ_CP010961.1 Protein Homology CDS 3941640 3942266 . + 0 ID=cds3696;Parent=gene3759;Dbxref=Genbank:WP_033446158.1;Name=WP_033446158.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_033446158.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3942291 3943058 . - . ID=gene3760;Name=RD04_RS18805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18805;old_locus_tag=RD04_18765 NZ_CP010961.1 Protein Homology CDS 3942291 3943058 . - 0 ID=cds3697;Parent=gene3760;Dbxref=Genbank:WP_010931609.1;Name=WP_010931609.1;gbkey=CDS;product=NADH pyrophosphatase;protein_id=WP_010931609.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3943139 3944083 . - . ID=gene3761;Name=RD04_RS18810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18810;old_locus_tag=RD04_18770 NZ_CP010961.1 Protein Homology CDS 3943139 3944083 . - 0 ID=cds3698;Parent=gene3761;Dbxref=Genbank:WP_010931610.1;Name=WP_010931610.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_010931610.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3944080 3945384 . - . ID=gene3762;Name=RD04_RS18815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18815;old_locus_tag=RD04_18775 NZ_CP010961.1 Protein Homology CDS 3944080 3945384 . - 0 ID=cds3699;Parent=gene3762;Dbxref=Genbank:WP_010931611.1;Name=WP_010931611.1;gbkey=CDS;product=amidase;protein_id=WP_010931611.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3945381 3946172 . - . ID=gene3763;Name=RD04_RS18820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18820;old_locus_tag=RD04_18780 NZ_CP010961.1 Protein Homology CDS 3945381 3946172 . - 0 ID=cds3700;Parent=gene3763;Dbxref=Genbank:WP_003814771.1;Name=WP_003814771.1;gbkey=CDS;product=zinc-binding dehydrogenase;protein_id=WP_003814771.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3946295 3947209 . + . ID=gene3764;Name=RD04_RS18825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18825;old_locus_tag=RD04_18785 NZ_CP010961.1 Protein Homology CDS 3946295 3947209 . + 0 ID=cds3701;Parent=gene3764;Dbxref=Genbank:WP_010931613.1;Name=WP_010931613.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_010931613.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3947225 3948370 . - . ID=gene3765;Name=RD04_RS18830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18830;old_locus_tag=RD04_18790 NZ_CP010961.1 Protein Homology CDS 3947225 3948370 . - 0 ID=cds3702;Parent=gene3765;Dbxref=Genbank:WP_003814767.1;Name=WP_003814767.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003814767.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3948367 3949590 . - . ID=gene3766;Name=RD04_RS18835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18835;old_locus_tag=RD04_18795 NZ_CP010961.1 Protein Homology CDS 3948367 3949590 . - 0 ID=cds3703;Parent=gene3766;Dbxref=Genbank:WP_010927091.1;Name=WP_010927091.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010927091.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3949587 3951185 . - . ID=gene3767;Name=RD04_RS18840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18840 NZ_CP010961.1 Protein Homology CDS 3949587 3951185 . - 0 ID=cds3704;Parent=gene3767;Dbxref=Genbank:WP_010931614.1;Name=WP_010931614.1;gbkey=CDS;product=branched-chain amino acid ABC transporter ATP-binding protein;protein_id=WP_010931614.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3951182 3952144 . - . ID=gene3768;Name=RD04_RS18845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18845;old_locus_tag=RD04_18805 NZ_CP010961.1 Protein Homology CDS 3951182 3952144 . - 0 ID=cds3705;Parent=gene3768;Dbxref=Genbank:WP_010931615.1;Name=WP_010931615.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_010931615.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3952141 3953013 . - . ID=gene3769;Name=RD04_RS18850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18850;old_locus_tag=RD04_18810 NZ_CP010961.1 Protein Homology CDS 3952141 3953013 . - 0 ID=cds3706;Parent=gene3769;Dbxref=Genbank:WP_019247429.1;Name=WP_019247429.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_019247429.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3953010 3953648 . - . ID=gene3770;Name=RD04_RS18855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18855;old_locus_tag=RD04_18815 NZ_CP010961.1 Protein Homology CDS 3953010 3953648 . - 0 ID=cds3707;Parent=gene3770;Dbxref=Genbank:WP_003814756.1;Name=WP_003814756.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003814756.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3953707 3955068 . - . ID=gene3771;Name=RD04_RS18860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18860;old_locus_tag=RD04_18820 NZ_CP010961.1 Protein Homology CDS 3953707 3955068 . - 0 ID=cds3708;Parent=gene3771;Dbxref=Genbank:WP_010931617.1;Name=WP_010931617.1;gbkey=CDS;product=(Fe-S)-binding protein;protein_id=WP_010931617.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3955309 3955542 . - . ID=gene3772;Name=RD04_RS18865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18865;old_locus_tag=RD04_18825 NZ_CP010961.1 Protein Homology CDS 3955309 3955542 . - 0 ID=cds3709;Parent=gene3772;Dbxref=Genbank:WP_003820674.1;Name=WP_003820674.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003820674.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3955885 3956853 . + . ID=gene3773;Name=RD04_RS18870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18870;old_locus_tag=RD04_18830 NZ_CP010961.1 Protein Homology CDS 3955885 3956853 . + 0 ID=cds3710;Parent=gene3773;Dbxref=Genbank:WP_010931618.1;Name=WP_010931618.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931618.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3956955 3957860 . + . ID=gene3774;Name=RD04_RS18875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18875;old_locus_tag=RD04_18835 NZ_CP010961.1 Protein Homology CDS 3956955 3957860 . + 0 ID=cds3711;Parent=gene3774;Dbxref=Genbank:WP_003814746.1;Name=WP_003814746.1;Note=catalyzes the formation of pyridine-2%2C3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide;gbkey=CDS;product=nicotinate-nucleotide diphosphorylase (carboxylating);protein_id=WP_003814746.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3958007 3958909 . + . ID=gene3775;Name=RD04_RS18880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18880;old_locus_tag=RD04_18840 NZ_CP010961.1 GeneMarkS+ CDS 3958007 3958909 . + 0 ID=cds3712;Parent=gene3775;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3958906 3959967 . - . ID=gene3776;Name=RD04_RS18885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18885;old_locus_tag=RD04_18845 NZ_CP010961.1 Protein Homology CDS 3958906 3959967 . - 0 ID=cds3713;Parent=gene3776;Dbxref=Genbank:WP_010931619.1;Name=WP_010931619.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_010931619.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3959964 3961286 . - . ID=gene3777;Name=RD04_RS18890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18890;old_locus_tag=RD04_18850 NZ_CP010961.1 Protein Homology CDS 3959964 3961286 . - 0 ID=cds3714;Parent=gene3777;Dbxref=Genbank:WP_010931620.1;Name=WP_010931620.1;gbkey=CDS;product=UDP-glucose 6-dehydrogenase;protein_id=WP_010931620.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3961398 3962783 . - . ID=gene3778;Name=RD04_RS18895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18895;old_locus_tag=RD04_18855 NZ_CP010961.1 Protein Homology CDS 3961398 3962783 . - 0 ID=cds3715;Parent=gene3778;Dbxref=Genbank:WP_010931621.1;Name=WP_010931621.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931621.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3962780 3964153 . - . ID=gene3779;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=RD04_RS18900;old_locus_tag=RD04_18860 NZ_CP010961.1 Protein Homology CDS 3962780 3964153 . - 0 ID=cds3716;Parent=gene3779;Dbxref=Genbank:WP_003818080.1;Name=WP_003818080.1;Note=forms a homotrimer%3B catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc%3B function in cell wall synthesis;gbkey=CDS;gene=glmU;product=bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase;protein_id=WP_003818080.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3964228 3964941 . - . ID=gene3780;Name=RD04_RS18905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18905;old_locus_tag=RD04_18865 NZ_CP010961.1 Protein Homology CDS 3964228 3964941 . - 0 ID=cds3717;Parent=gene3780;Dbxref=Genbank:WP_003815722.1;Name=WP_003815722.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_003815722.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3965157 3965801 . - . ID=gene3781;Name=RD04_RS18910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18910;old_locus_tag=RD04_18870 NZ_CP010961.1 Protein Homology CDS 3965157 3965801 . - 0 ID=cds3718;Parent=gene3781;Dbxref=Genbank:WP_003815724.1;Name=WP_003815724.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815724.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3965929 3966150 . + . ID=gene3782;Name=RD04_RS18915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18915;old_locus_tag=RD04_18875 NZ_CP010961.1 Protein Homology CDS 3965929 3966150 . + 0 ID=cds3719;Parent=gene3782;Dbxref=Genbank:WP_003815725.1;Name=WP_003815725.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815725.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3966322 3966924 . - . ID=gene3783;Name=RD04_RS18920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18920;old_locus_tag=RD04_18880 NZ_CP010961.1 Protein Homology CDS 3966322 3966924 . - 0 ID=cds3720;Parent=gene3783;Dbxref=Genbank:WP_003815727.1;Name=WP_003815727.1;gbkey=CDS;product=photosynthetic protein synthase I;protein_id=WP_003815727.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3966944 3967837 . - . ID=gene3784;Name=RD04_RS18925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18925;old_locus_tag=RD04_18885 NZ_CP010961.1 Protein Homology CDS 3966944 3967837 . - 0 ID=cds3721;Parent=gene3784;Dbxref=Genbank:WP_010931622.1;Name=WP_010931622.1;Note=converts protoheme IX and farnesyl diphosphate to heme O;gbkey=CDS;product=protoheme IX farnesyltransferase;protein_id=WP_010931622.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3967848 3968879 . - . ID=gene3785;Name=RD04_RS18930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18930;old_locus_tag=RD04_18890 NZ_CP010961.1 Protein Homology CDS 3967848 3968879 . - 0 ID=cds3722;Parent=gene3785;Dbxref=Genbank:WP_010931623.1;Name=WP_010931623.1;gbkey=CDS;product=cytochrome c oxidase subunit I;protein_id=WP_010931623.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3968882 3969463 . - . ID=gene3786;Name=RD04_RS18935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18935;old_locus_tag=RD04_18895 NZ_CP010961.1 Protein Homology CDS 3968882 3969463 . - 0 ID=cds3723;Parent=gene3786;Dbxref=Genbank:WP_047122775.1;Name=WP_047122775.1;gbkey=CDS;product=membrane protein;protein_id=WP_047122775.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3969528 3970298 . - . ID=gene3787;Name=RD04_RS18940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18940;old_locus_tag=RD04_18900 NZ_CP010961.1 Protein Homology CDS 3969528 3970298 . - 0 ID=cds3724;Parent=gene3787;Dbxref=Genbank:WP_023995706.1;Name=WP_023995706.1;gbkey=CDS;product=SURF1 family protein;protein_id=WP_023995706.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3970335 3970535 . + . ID=gene3788;Name=RD04_RS18945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18945;old_locus_tag=RD04_18905 NZ_CP010961.1 Protein Homology CDS 3970335 3970535 . + 0 ID=cds3725;Parent=gene3788;Dbxref=Genbank:WP_003815736.1;Name=WP_003815736.1;gbkey=CDS;product=membrane protein;protein_id=WP_003815736.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3970645 3971520 . - . ID=gene3789;Name=RD04_RS18950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18950;old_locus_tag=RD04_18910 NZ_CP010961.1 Protein Homology CDS 3970645 3971520 . - 0 ID=cds3726;Parent=gene3789;Dbxref=Genbank:WP_003815738.1;Name=WP_003815738.1;gbkey=CDS;product=MFS transporter;protein_id=WP_003815738.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3971557 3971781 . - . ID=gene3790;Name=RD04_RS18955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18955;old_locus_tag=RD04_18915 NZ_CP010961.1 Protein Homology CDS 3971557 3971781 . - 0 ID=cds3727;Parent=gene3790;Dbxref=Genbank:WP_003815740.1;Name=WP_003815740.1;gbkey=CDS;product=membrane protein;protein_id=WP_003815740.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3971795 3971917 . - . ID=gene3791;Name=RD04_RS18960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18960;old_locus_tag=RD04_18920 NZ_CP010961.1 Protein Homology CDS 3971795 3971917 . - 0 ID=cds3728;Parent=gene3791;Dbxref=Genbank:WP_003815743.1;Name=WP_003815743.1;gbkey=CDS;product=membrane protein;protein_id=WP_003815743.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3971952 3973559 . - . ID=gene3792;Name=RD04_RS18965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18965;old_locus_tag=RD04_18925 NZ_CP010961.1 Protein Homology CDS 3971952 3973559 . - 0 ID=cds3729;Parent=gene3792;Dbxref=Genbank:WP_010931626.1;Name=WP_010931626.1;gbkey=CDS;product=cytochrome c oxidase subunit I;protein_id=WP_010931626.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3973670 3974827 . - . ID=gene3793;Name=RD04_RS18970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18970;old_locus_tag=RD04_18930 NZ_CP010961.1 Protein Homology CDS 3973670 3974827 . - 0 ID=cds3730;Parent=gene3793;Dbxref=Genbank:WP_029443774.1;Name=WP_029443774.1;gbkey=CDS;product=cytochrome c oxidase subunit II;protein_id=WP_029443774.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3975096 3975929 . + . ID=gene3794;Name=RD04_RS18975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18975;old_locus_tag=RD04_18935 NZ_CP010961.1 Protein Homology CDS 3975096 3975929 . + 0 ID=cds3731;Parent=gene3794;Dbxref=Genbank:WP_010931628.1;Name=WP_010931628.1;gbkey=CDS;product=NUDIX hydrolase;protein_id=WP_010931628.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3976033 3978576 . - . ID=gene3795;Name=RD04_RS18980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18980;old_locus_tag=RD04_18940 NZ_CP010961.1 Protein Homology CDS 3976033 3978576 . - 0 ID=cds3732;Parent=gene3795;Dbxref=Genbank:WP_010931629.1;Name=WP_010931629.1;gbkey=CDS;product=sodium/hydrogen exchanger;protein_id=WP_010931629.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3978754 3979566 . + . ID=gene3796;Name=RD04_RS18985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18985;old_locus_tag=RD04_18945 NZ_CP010961.1 Protein Homology CDS 3978754 3979566 . + 0 ID=cds3733;Parent=gene3796;Dbxref=Genbank:WP_003815754.1;Name=WP_003815754.1;gbkey=CDS;product=phosphodiesterase;protein_id=WP_003815754.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3979960 3980847 . - . ID=gene3797;Name=RD04_RS18990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18990;old_locus_tag=RD04_18950 NZ_CP010961.1 Protein Homology CDS 3979960 3980847 . - 0 ID=cds3734;Parent=gene3797;Dbxref=Genbank:WP_023853617.1;Name=WP_023853617.1;Note=binds with the catalytic core of RNA polymerase to produce the holoenzyme%3B this sigma factor is responsible for the expression of heat shock promoters;gbkey=CDS;product=RNA polymerase factor sigma-32;protein_id=WP_023853617.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3980991 3981629 . - . ID=gene3798;Name=RD04_RS18995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS18995;old_locus_tag=RD04_18955 NZ_CP010961.1 Protein Homology CDS 3980991 3981629 . - 0 ID=cds3735;Parent=gene3798;Dbxref=Genbank:WP_010931630.1;Name=WP_010931630.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931630.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3981740 3982588 . - . ID=gene3799;Name=RD04_RS19000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19000;old_locus_tag=RD04_18960 NZ_CP010961.1 Protein Homology CDS 3981740 3982588 . - 0 ID=cds3736;Parent=gene3799;Dbxref=Genbank:WP_010931631.1;Name=WP_010931631.1;gbkey=CDS;product=S-formylglutathione hydrolase;protein_id=WP_010931631.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3982590 3983696 . - . ID=gene3800;Name=RD04_RS19005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19005;old_locus_tag=RD04_18965 NZ_CP010961.1 Protein Homology CDS 3982590 3983696 . - 0 ID=cds3737;Parent=gene3800;Dbxref=Genbank:WP_003815761.1;Name=WP_003815761.1;gbkey=CDS;product=S-(hydroxymethyl)glutathione dehydrogenase;protein_id=WP_003815761.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3983880 3984643 . + . ID=gene3801;Name=RD04_RS19010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS19010;old_locus_tag=RD04_18970;pseudo=true NZ_CP010961.1 Protein Homology CDS 3983880 3984643 . + 0 ID=cds3738;Parent=gene3801;Note=frameshifted;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3984988 3989727 . + . ID=gene3802;Name=RD04_RS19015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19015;old_locus_tag=RD04_18975 NZ_CP010961.1 Protein Homology CDS 3984988 3989727 . + 0 ID=cds3739;Parent=gene3802;Dbxref=Genbank:WP_010931633.1;Name=WP_010931633.1;gbkey=CDS;product=glutamate synthase;protein_id=WP_010931633.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3989736 3991202 . + . ID=gene3803;Name=gltD;gbkey=Gene;gene=gltD;gene_biotype=protein_coding;locus_tag=RD04_RS19020;old_locus_tag=RD04_18980 NZ_CP010961.1 Protein Homology CDS 3989736 3991202 . + 0 ID=cds3740;Parent=gene3803;Dbxref=Genbank:WP_010931634.1;Name=WP_010931634.1;Note=glutamate synthase is composed of subunits alpha and beta%3B beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase%3B provides electrons to the alpha subunit%2C which binds L-glutamine and 2-oxoglutarate and forms L-glutamate;gbkey=CDS;gene=gltD;product=dihydropyrimidine dehydrogenase subunit A;protein_id=WP_010931634.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3991494 3992132 . + . ID=gene3804;Name=RD04_RS19025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19025;old_locus_tag=RD04_18985 NZ_CP010961.1 Protein Homology CDS 3991494 3992132 . + 0 ID=cds3741;Parent=gene3804;Dbxref=Genbank:WP_003815769.1;Name=WP_003815769.1;gbkey=CDS;product=outer membrane protein;protein_id=WP_003815769.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3992214 3993197 . + . ID=gene3805;Name=RD04_RS19030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19030;old_locus_tag=RD04_18990 NZ_CP010961.1 Protein Homology CDS 3992214 3993197 . + 0 ID=cds3742;Parent=gene3805;Dbxref=Genbank:WP_010931635.1;Name=WP_010931635.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010931635.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3993352 3994188 . + . ID=gene3806;Name=RD04_RS19035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19035;old_locus_tag=RD04_18995 NZ_CP010961.1 Protein Homology CDS 3993352 3994188 . + 0 ID=cds3743;Parent=gene3806;Dbxref=Genbank:WP_010931636.1;Name=WP_010931636.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931636.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3994185 3994970 . + . ID=gene3807;Name=RD04_RS19040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19040;old_locus_tag=RD04_19000 NZ_CP010961.1 Protein Homology CDS 3994185 3994970 . + 0 ID=cds3744;Parent=gene3807;Dbxref=Genbank:WP_010931637.1;Name=WP_010931637.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931637.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3994983 3995489 . + . ID=gene3808;Name=RD04_RS19045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19045;old_locus_tag=RD04_19005 NZ_CP010961.1 Protein Homology CDS 3994983 3995489 . + 0 ID=cds3745;Parent=gene3808;Dbxref=Genbank:WP_003815777.1;Name=WP_003815777.1;gbkey=CDS;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_003815777.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3995589 3996380 . + . ID=gene3809;Name=RD04_RS19050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19050;old_locus_tag=RD04_19010 NZ_CP010961.1 Protein Homology CDS 3995589 3996380 . + 0 ID=cds3746;Parent=gene3809;Dbxref=Genbank:WP_010931638.1;Name=WP_010931638.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010931638.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3996414 3997037 . + . ID=gene3810;Name=RD04_RS19055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19055;old_locus_tag=RD04_19015 NZ_CP010961.1 Protein Homology CDS 3996414 3997037 . + 0 ID=cds3747;Parent=gene3810;Dbxref=Genbank:WP_003815780.1;Name=WP_003815780.1;gbkey=CDS;product=exported protein;protein_id=WP_003815780.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3997142 3997955 . + . ID=gene3811;Name=RD04_RS19060;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS19060;old_locus_tag=RD04_19020;pseudo=true NZ_CP010961.1 Protein Homology CDS 3997142 3997955 . + 0 ID=cds3748;Parent=gene3811;Note=frameshifted;gbkey=CDS;product=ABC transporter ATP-binding protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3997952 3998692 . + . ID=gene3812;Name=RD04_RS19065;end_range=3998692,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS19065;old_locus_tag=RD04_19025;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 3997952 3998692 . + 0 ID=cds3749;Parent=gene3812;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=3998692,.;gbkey=CDS;partial=true;product=metal-dependent hydrolase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 3998684 3999586 . - . ID=gene3813;Name=RD04_RS19070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19070;old_locus_tag=RD04_19030 NZ_CP010961.1 GeneMarkS+ CDS 3998684 3999586 . - 0 ID=cds3750;Parent=gene3813;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 3999822 4000067 . + . ID=gene3814;Name=RD04_RS19075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19075;old_locus_tag=RD04_19035 NZ_CP010961.1 Protein Homology CDS 3999822 4000067 . + 0 ID=cds3751;Parent=gene3814;Dbxref=Genbank:WP_023853613.1;Name=WP_023853613.1;gbkey=CDS;product=BolA family transcriptional regulator;protein_id=WP_023853613.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4000067 4001335 . + . ID=gene3815;Name=RD04_RS19080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19080;old_locus_tag=RD04_19040 NZ_CP010961.1 Protein Homology CDS 4000067 4001335 . + 0 ID=cds3752;Parent=gene3815;Dbxref=Genbank:WP_010927222.1;Name=WP_010927222.1;gbkey=CDS;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_010927222.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4001332 4002003 . + . ID=gene3816;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=RD04_RS19085;old_locus_tag=RD04_19045 NZ_CP010961.1 Protein Homology CDS 4001332 4002003 . + 0 ID=cds3753;Parent=gene3816;Dbxref=Genbank:WP_010931640.1;Name=WP_010931640.1;Note=short form of enzyme%3B requires HisZ for function%3B catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms heteromultimer of HisG and HisZ;gbkey=CDS;gene=hisG;product=ATP phosphoribosyltransferase;protein_id=WP_010931640.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4002054 4003358 . + . ID=gene3817;Name=RD04_RS19090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19090;old_locus_tag=RD04_19050 NZ_CP010961.1 Protein Homology CDS 4002054 4003358 . + 0 ID=cds3754;Parent=gene3817;Dbxref=Genbank:WP_010931641.1;Name=WP_010931641.1;gbkey=CDS;product=histidinol dehydrogenase;protein_id=WP_010931641.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4003355 4004452 . + . ID=gene3818;Name=RD04_RS19095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19095;old_locus_tag=RD04_19055 NZ_CP010961.1 Protein Homology CDS 4003355 4004452 . + 0 ID=cds3755;Parent=gene3818;Dbxref=Genbank:WP_010931642.1;Name=WP_010931642.1;Note=catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis;gbkey=CDS;product=histidinol-phosphate aminotransferase;protein_id=WP_010931642.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4004454 4005041 . + . ID=gene3819;Name=RD04_RS19100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19100;old_locus_tag=RD04_19060 NZ_CP010961.1 Protein Homology CDS 4004454 4005041 . + 0 ID=cds3756;Parent=gene3819;Dbxref=Genbank:WP_003815795.1;Name=WP_003815795.1;gbkey=CDS;product=imidazoleglycerol-phosphate dehydratase;protein_id=WP_003815795.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4005073 4005749 . + . ID=gene3820;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=pseudogene;locus_tag=RD04_RS19105;old_locus_tag=RD04_19065;pseudo=true NZ_CP010961.1 Protein Homology CDS 4005073 4005749 . + 0 ID=cds3757;Parent=gene3820;Note=with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamide ribonucleotide%2C and glutamate in histidine biosynthesis%3B the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide%3B frameshifted;gbkey=CDS;gene=hisH;product=imidazole glycerol phosphate synthase subunit HisH;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 4005813 4006553 . + . ID=gene3821;Name=RD04_RS19110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19110;old_locus_tag=RD04_19070 NZ_CP010961.1 Protein Homology CDS 4005813 4006553 . + 0 ID=cds3758;Parent=gene3821;Dbxref=Genbank:WP_010927224.1;Name=WP_010927224.1;Note=catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l-(5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide;gbkey=CDS;product=1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase;protein_id=WP_010927224.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4006550 4007359 . + . ID=gene3822;Name=RD04_RS19115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19115;old_locus_tag=RD04_19075 NZ_CP010961.1 Protein Homology CDS 4006550 4007359 . + 0 ID=cds3759;Parent=gene3822;Dbxref=Genbank:WP_003815802.1;Name=WP_003815802.1;gbkey=CDS;product=imidazole glycerol phosphate synthase cyclase subunit;protein_id=WP_003815802.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4007356 4007760 . + . ID=gene3823;Name=hisI;gbkey=Gene;gene=hisI;gene_biotype=protein_coding;locus_tag=RD04_RS19120;old_locus_tag=RD04_19080 NZ_CP010961.1 Protein Homology CDS 4007356 4007760 . + 0 ID=cds3760;Parent=gene3823;Dbxref=Genbank:WP_010931645.1;Name=WP_010931645.1;Note=PR-AMP cyclohydrolase%3B functions in histidine biosynthesis from PRPP%3B converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxyamide during the histidine biosynthesis pathway%3B binds zinc and magnesium%3B forms homodimers;gbkey=CDS;gene=hisI;product=phosphoribosyl-AMP cyclohydrolase;protein_id=WP_010931645.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4007757 4008104 . + . ID=gene3824;Name=RD04_RS19125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19125;old_locus_tag=RD04_19085 NZ_CP010961.1 Protein Homology CDS 4007757 4008104 . + 0 ID=cds3761;Parent=gene3824;Dbxref=Genbank:WP_003815805.1;Name=WP_003815805.1;gbkey=CDS;product=phosphoribosyl-ATP pyrophosphatase;protein_id=WP_003815805.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4008119 4008487 . + . ID=gene3825;Name=RD04_RS19130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19130;old_locus_tag=RD04_19090 NZ_CP010961.1 Protein Homology CDS 4008119 4008487 . + 0 ID=cds3762;Parent=gene3825;Dbxref=Genbank:WP_003815807.1;Name=WP_003815807.1;gbkey=CDS;product=histidine triad nucleotide-binding protein;protein_id=WP_003815807.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4008503 4008730 . + . ID=gene3826;Name=RD04_RS19135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19135;old_locus_tag=RD04_19095 NZ_CP010961.1 Protein Homology CDS 4008503 4008730 . + 0 ID=cds3763;Parent=gene3826;Dbxref=Genbank:WP_003815808.1;Name=WP_003815808.1;gbkey=CDS;product=protein translocase TatA;protein_id=WP_003815808.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4008803 4009246 . + . ID=gene3827;Name=RD04_RS19140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19140;old_locus_tag=RD04_19100 NZ_CP010961.1 Protein Homology CDS 4008803 4009246 . + 0 ID=cds3764;Parent=gene3827;Dbxref=Genbank:WP_010931646.1;Name=WP_010931646.1;gbkey=CDS;product=Sec-independent protein translocase TatB;protein_id=WP_010931646.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4009243 4010043 . + . ID=gene3828;Name=RD04_RS19145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19145;old_locus_tag=RD04_19105 NZ_CP010961.1 Protein Homology CDS 4009243 4010043 . + 0 ID=cds3765;Parent=gene3828;Dbxref=Genbank:WP_003815810.1;Name=WP_003815810.1;Note=with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane;gbkey=CDS;product=preprotein translocase subunit TatC;protein_id=WP_003815810.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4010121 4010606 . + . ID=gene3829;Name=RD04_RS19150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19150;old_locus_tag=RD04_19110 NZ_CP010961.1 GeneMarkS+ CDS 4010121 4010606 . + 0 ID=cds3766;Parent=gene3829;Dbxref=Genbank:WP_039249574.1;Name=WP_039249574.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_039249574.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4010825 4011803 . + . ID=gene3830;Name=RD04_RS19155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS19155;old_locus_tag=RD04_19115;pseudo=true NZ_CP010961.1 Protein Homology CDS 4010825 4011803 . + 0 ID=cds3767;Parent=gene3830;Note=frameshifted;gbkey=CDS;product=protein BugT;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 4012070 4012879 . + . ID=gene3831;Name=RD04_RS19160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19160;old_locus_tag=RD04_19120 NZ_CP010961.1 Protein Homology CDS 4012070 4012879 . + 0 ID=cds3768;Parent=gene3831;Dbxref=Genbank:WP_010931648.1;Name=WP_010931648.1;gbkey=CDS;product=Pertussis toxin subunit 1;protein_id=WP_010931648.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4012919 4013599 . + . ID=gene3832;Name=RD04_RS19165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19165;old_locus_tag=RD04_19125 NZ_CP010961.1 Protein Homology CDS 4012919 4013599 . + 0 ID=cds3769;Parent=gene3832;Dbxref=Genbank:WP_014906114.1;Name=WP_014906114.1;gbkey=CDS;product=pertussis toxin subunit 2;protein_id=WP_014906114.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4013593 4014051 . + . ID=gene3833;Name=RD04_RS19170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19170;old_locus_tag=RD04_19130 NZ_CP010961.1 Protein Homology CDS 4013593 4014051 . + 0 ID=cds3770;Parent=gene3833;Dbxref=Genbank:WP_010929491.1;Name=WP_010929491.1;gbkey=CDS;product=pertussis toxin subunit 4;protein_id=WP_010929491.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4014024 4014425 . + . ID=gene3834;Name=RD04_RS19175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19175;old_locus_tag=RD04_19135 NZ_CP010961.1 Protein Homology CDS 4014024 4014425 . + 0 ID=cds3771;Parent=gene3834;Dbxref=Genbank:WP_010931650.1;Name=WP_010931650.1;gbkey=CDS;product=Pertussis toxin subunit 5;protein_id=WP_010931650.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4014508 4015191 . + . ID=gene3835;Name=RD04_RS19180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19180;old_locus_tag=RD04_19140 NZ_CP010961.1 Protein Homology CDS 4014508 4015191 . + 0 ID=cds3772;Parent=gene3835;Dbxref=Genbank:WP_010931651.1;Name=WP_010931651.1;gbkey=CDS;product=Pertussis toxin subunit 3;protein_id=WP_010931651.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4015247 4015555 . + . ID=gene3836;Name=RD04_RS19185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19185;old_locus_tag=RD04_19145 NZ_CP010961.1 Protein Homology CDS 4015247 4015555 . + 0 ID=cds3773;Parent=gene3836;Dbxref=Genbank:WP_010929493.1;Name=WP_010929493.1;gbkey=CDS;product=type IV secretion protein A;protein_id=WP_010929493.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4015574 4015888 . + . ID=gene3837;Name=RD04_RS19190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19190;old_locus_tag=RD04_19150 NZ_CP010961.1 Protein Homology CDS 4015574 4015888 . + 0 ID=cds3774;Parent=gene3837;Dbxref=Genbank:WP_010929494.1;Name=WP_010929494.1;gbkey=CDS;product=type IV secretion protein B;protein_id=WP_010929494.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4015885 4018359 . + . ID=gene3838;Name=RD04_RS19195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19195;old_locus_tag=RD04_19155 NZ_CP010961.1 Protein Homology CDS 4015885 4018359 . + 0 ID=cds3775;Parent=gene3838;Dbxref=Genbank:WP_010931652.1;Name=WP_010931652.1;gbkey=CDS;product=type IV secretion system protein PtlC;protein_id=WP_010931652.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4018367 4019758 . + . ID=gene3839;Name=RD04_RS19200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19200;old_locus_tag=RD04_19160 NZ_CP010961.1 Protein Homology CDS 4018367 4019758 . + 0 ID=cds3776;Parent=gene3839;Dbxref=Genbank:WP_010931653.1;Name=WP_010931653.1;gbkey=CDS;product=type IV secretion system protein PtlD;protein_id=WP_010931653.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4019755 4019940 . + . ID=gene3840;Name=RD04_RS19205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19205;old_locus_tag=RD04_19165 NZ_CP010961.1 Protein Homology CDS 4019755 4019940 . + 0 ID=cds3777;Parent=gene3840;Dbxref=Genbank:WP_010929497.1;Name=WP_010929497.1;gbkey=CDS;product=type IV secretion protein I;protein_id=WP_010929497.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4019919 4020620 . + . ID=gene3841;Name=RD04_RS19210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19210;old_locus_tag=RD04_19170 NZ_CP010961.1 Protein Homology CDS 4019919 4020620 . + 0 ID=cds3778;Parent=gene3841;Dbxref=Genbank:WP_010929498.1;Name=WP_010929498.1;gbkey=CDS;product=type IV secretion protein E;protein_id=WP_010929498.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4020617 4021438 . + . ID=gene3842;Name=RD04_RS19215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19215;old_locus_tag=RD04_19175 NZ_CP010961.1 Protein Homology CDS 4020617 4021438 . + 0 ID=cds3779;Parent=gene3842;Dbxref=Genbank:WP_010931654.1;Name=WP_010931654.1;gbkey=CDS;product=type IV secretion system protein PtlF;protein_id=WP_010931654.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4021419 4022543 . + . ID=gene3843;Name=RD04_RS19220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19220;old_locus_tag=RD04_19180 NZ_CP010961.1 Protein Homology CDS 4021419 4022543 . + 0 ID=cds3780;Parent=gene3843;Dbxref=Genbank:WP_010931655.1;Name=WP_010931655.1;gbkey=CDS;product=type IV secretion system protein PtlG;protein_id=WP_010931655.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4022536 4023555 . + . ID=gene3844;Name=RD04_RS19225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19225;old_locus_tag=RD04_19185 NZ_CP010961.1 Protein Homology CDS 4022536 4023555 . + 0 ID=cds3781;Parent=gene3844;Dbxref=Genbank:WP_010929500.1;Name=WP_010929500.1;gbkey=CDS;product=type IV secretion protein H;protein_id=WP_010929500.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4023612 4023687 . + . ID=gene3845;Name=RD04_RS19230;gbkey=Gene;gene_biotype=tRNA;locus_tag=RD04_RS19230;old_locus_tag=RD04_19190 NZ_CP010961.1 tRNAscan-SE tRNA 4023612 4023687 . + . ID=rna63;Parent=gene3845;anticodon=(pos:4023645..4023647);gbkey=tRNA;product=tRNA-Asn NZ_CP010961.1 tRNAscan-SE exon 4023612 4023687 . + . ID=id71;Parent=rna63;anticodon=(pos:4023645..4023647);gbkey=tRNA;product=tRNA-Asn NZ_CP010961.1 RefSeq gene 4023761 4024651 . - . ID=gene3846;Name=RD04_RS19235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19235;old_locus_tag=RD04_19195 NZ_CP010961.1 Protein Homology CDS 4023761 4024651 . - 0 ID=cds3782;Parent=gene3846;Dbxref=Genbank:WP_010931656.1;Name=WP_010931656.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931656.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4024794 4025687 . + . ID=gene3847;Name=RD04_RS19240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19240;old_locus_tag=RD04_19200 NZ_CP010961.1 Protein Homology CDS 4024794 4025687 . + 0 ID=cds3783;Parent=gene3847;Dbxref=Genbank:WP_010931657.1;Name=WP_010931657.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_010931657.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4025770 4026144 . + . ID=gene3848;Name=RD04_RS19245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19245;old_locus_tag=RD04_19205 NZ_CP010961.1 Protein Homology CDS 4025770 4026144 . + 0 ID=cds3784;Parent=gene3848;Dbxref=Genbank:WP_003815873.1;Name=WP_003815873.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815873.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4026122 4027531 . + . ID=gene3849;Name=RD04_RS19250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19250;old_locus_tag=RD04_19210 NZ_CP010961.1 Protein Homology CDS 4026122 4027531 . + 0 ID=cds3785;Parent=gene3849;Dbxref=Genbank:WP_010931658.1;Name=WP_010931658.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931658.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4027524 4028906 . + . ID=gene3850;Name=RD04_RS19255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19255;old_locus_tag=RD04_19215 NZ_CP010961.1 Protein Homology CDS 4027524 4028906 . + 0 ID=cds3786;Parent=gene3850;Dbxref=Genbank:WP_003815876.1;Name=WP_003815876.1;gbkey=CDS;product=GTPase SAR1;protein_id=WP_003815876.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4029241 4030845 . + . ID=gene3851;Name=RD04_RS19260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19260;old_locus_tag=RD04_19220 NZ_CP010961.1 Protein Homology CDS 4029241 4030845 . + 0 ID=cds3787;Parent=gene3851;Dbxref=Genbank:WP_003815878.1;Name=WP_003815878.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003815878.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4030923 4031894 . + . ID=gene3852;Name=RD04_RS19265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19265;old_locus_tag=RD04_19225 NZ_CP010961.1 Protein Homology CDS 4030923 4031894 . + 0 ID=cds3788;Parent=gene3852;Dbxref=Genbank:WP_010931659.1;Name=WP_010931659.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931659.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4031905 4032831 . + . ID=gene3853;Name=RD04_RS19270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19270;old_locus_tag=RD04_19230 NZ_CP010961.1 Protein Homology CDS 4031905 4032831 . + 0 ID=cds3789;Parent=gene3853;Dbxref=Genbank:WP_010931660.1;Name=WP_010931660.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931660.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4032845 4033225 . + . ID=gene3854;Name=RD04_RS19275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19275;old_locus_tag=RD04_19235 NZ_CP010961.1 GeneMarkS+ CDS 4032845 4033225 . + 0 ID=cds3790;Parent=gene3854;Dbxref=Genbank:WP_033446141.1;Name=WP_033446141.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_033446141.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4033222 4034172 . - . ID=gene3855;Name=RD04_RS19280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19280;old_locus_tag=RD04_19240 NZ_CP010961.1 Protein Homology CDS 4033222 4034172 . - 0 ID=cds3791;Parent=gene3855;Dbxref=Genbank:WP_014486111.1;Name=WP_014486111.1;gbkey=CDS;product=integrase;protein_id=WP_014486111.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4034342 4035568 . + . ID=gene3856;Name=argJ;gbkey=Gene;gene=argJ;gene_biotype=protein_coding;locus_tag=RD04_RS19285;old_locus_tag=RD04_19245 NZ_CP010961.1 Protein Homology CDS 4034342 4035568 . + 0 ID=cds3792;Parent=gene3856;Dbxref=Genbank:WP_010931662.1;Name=WP_010931662.1;Note=bifunctional arginine biosynthesis protein ArgJ%3B functions at the 1st and 5th steps in arginine biosynthesis%3B involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate;gbkey=CDS;gene=argJ;product=arginine biosynthesis bifunctional protein ArgJ;protein_id=WP_010931662.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4035768 4036634 . + . ID=gene3857;Name=RD04_RS19290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19290;old_locus_tag=RD04_19250 NZ_CP010961.1 Protein Homology CDS 4035768 4036634 . + 0 ID=cds3793;Parent=gene3857;Dbxref=Genbank:WP_010931663.1;Name=WP_010931663.1;gbkey=CDS;product=ATPase AAA;protein_id=WP_010931663.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4036627 4037589 . + . ID=gene3858;Name=RD04_RS19295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19295;old_locus_tag=RD04_19255 NZ_CP010961.1 Protein Homology CDS 4036627 4037589 . + 0 ID=cds3794;Parent=gene3858;Dbxref=Genbank:WP_003815027.1;Name=WP_003815027.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815027.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4037690 4038640 . + . ID=gene3859;Name=RD04_RS19300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19300;old_locus_tag=RD04_19260 NZ_CP010961.1 Protein Homology CDS 4037690 4038640 . + 0 ID=cds3795;Parent=gene3859;Dbxref=Genbank:WP_010927663.1;Name=WP_010927663.1;gbkey=CDS;product=transposase;protein_id=WP_010927663.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4038787 4039689 . + . ID=gene3860;Name=RD04_RS19305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19305;old_locus_tag=RD04_19265 NZ_CP010961.1 GeneMarkS+ CDS 4038787 4039689 . + 0 ID=cds3796;Parent=gene3860;Dbxref=Genbank:WP_023994703.1;Name=WP_023994703.1;gbkey=CDS;product=transposase;protein_id=WP_023994703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4039686 4041179 . - . ID=gene3861;Name=RD04_RS19310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19310;old_locus_tag=RD04_19270 NZ_CP010961.1 Protein Homology CDS 4039686 4041179 . - 0 ID=cds3797;Parent=gene3861;Dbxref=Genbank:WP_023994937.1;Name=WP_023994937.1;gbkey=CDS;product=efflux transporter outer membrane factor lipoprotein%2C NodT family;protein_id=WP_023994937.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4041176 4044283 . - . ID=gene3862;Name=RD04_RS19315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19315;old_locus_tag=RD04_19275 NZ_CP010961.1 Protein Homology CDS 4041176 4044283 . - 0 ID=cds3798;Parent=gene3862;Dbxref=Genbank:WP_003815032.1;Name=WP_003815032.1;Note=Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate;gbkey=CDS;product=acriflavine resistance protein B;protein_id=WP_003815032.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4044280 4047348 . - . ID=gene3863;Name=RD04_RS19320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19320;old_locus_tag=RD04_19280 NZ_CP010961.1 Protein Homology CDS 4044280 4047348 . - 0 ID=cds3799;Parent=gene3863;Dbxref=Genbank:WP_010931665.1;Name=WP_010931665.1;Note=Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate;gbkey=CDS;product=multidrug transporter;protein_id=WP_010931665.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4047345 4048595 . - . ID=gene3864;Name=RD04_RS19325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19325;old_locus_tag=RD04_19285 NZ_CP010961.1 Protein Homology CDS 4047345 4048595 . - 0 ID=cds3800;Parent=gene3864;Dbxref=Genbank:WP_010931666.1;Name=WP_010931666.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_010931666.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4048776 4049528 . - . ID=gene3865;Name=RD04_RS19330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19330;old_locus_tag=RD04_19290 NZ_CP010961.1 Protein Homology CDS 4048776 4049528 . - 0 ID=cds3801;Parent=gene3865;Dbxref=Genbank:WP_023853184.1;Name=WP_023853184.1;gbkey=CDS;product=cell division protein ZapD;protein_id=WP_023853184.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4049570 4050214 . - . ID=gene3866;Name=RD04_RS19335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19335;old_locus_tag=RD04_19295 NZ_CP010961.1 Protein Homology CDS 4049570 4050214 . - 0 ID=cds3802;Parent=gene3866;Dbxref=Genbank:WP_010931667.1;Name=WP_010931667.1;gbkey=CDS;product=dephospho-CoA kinase;protein_id=WP_010931667.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4050223 4051062 . - . ID=gene3867;Name=RD04_RS19340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19340;old_locus_tag=RD04_19300 NZ_CP010961.1 Protein Homology CDS 4050223 4051062 . - 0 ID=cds3803;Parent=gene3867;Dbxref=Genbank:WP_003820519.1;Name=WP_003820519.1;gbkey=CDS;product=type 4 prepilin-like proteins leader peptide processing enzyme;protein_id=WP_003820519.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4051303 4052046 . + . ID=gene3868;Name=RD04_RS19345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19345;old_locus_tag=RD04_19305 NZ_CP010961.1 Protein Homology CDS 4051303 4052046 . + 0 ID=cds3804;Parent=gene3868;Dbxref=Genbank:WP_003815047.1;Name=WP_003815047.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815047.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4052129 4052476 . - . ID=gene3869;Name=RD04_RS19350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19350;old_locus_tag=RD04_19310 NZ_CP010961.1 Protein Homology CDS 4052129 4052476 . - 0 ID=cds3805;Parent=gene3869;Dbxref=Genbank:WP_003815049.1;Name=WP_003815049.1;gbkey=CDS;product=helix-turn-helix transcriptional regulator;protein_id=WP_003815049.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4052574 4053416 . - . ID=gene3870;Name=RD04_RS19355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19355;old_locus_tag=RD04_19315 NZ_CP010961.1 Protein Homology CDS 4052574 4053416 . - 0 ID=cds3806;Parent=gene3870;Dbxref=Genbank:WP_003815051.1;Name=WP_003815051.1;gbkey=CDS;product=pantoate--beta-alanine ligase;protein_id=WP_003815051.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4053461 4054348 . - . ID=gene3871;Name=RD04_RS19360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19360;old_locus_tag=RD04_19320 NZ_CP010961.1 Protein Homology CDS 4053461 4054348 . - 0 ID=cds3807;Parent=gene3871;Dbxref=Genbank:WP_003815053.1;Name=WP_003815053.1;gbkey=CDS;product=segregation/condensation protein A;protein_id=WP_003815053.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4054375 4054563 . - . ID=gene3872;Name=RD04_RS19365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19365;old_locus_tag=RD04_19325 NZ_CP010961.1 Protein Homology CDS 4054375 4054563 . - 0 ID=cds3808;Parent=gene3872;Dbxref=Genbank:WP_003815055.1;Name=WP_003815055.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_003815055.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4054661 4056118 . + . ID=gene3873;Name=RD04_RS19370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19370;old_locus_tag=RD04_19330 NZ_CP010961.1 Protein Homology CDS 4054661 4056118 . + 0 ID=cds3809;Parent=gene3873;Dbxref=Genbank:WP_010931669.1;Name=WP_010931669.1;gbkey=CDS;product=MFS transporter;protein_id=WP_010931669.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4056105 4057631 . + . ID=gene3874;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=RD04_RS19375;old_locus_tag=RD04_19335 NZ_CP010961.1 Protein Homology CDS 4056105 4057631 . + 0 ID=cds3810;Parent=gene3874;Dbxref=Genbank:WP_010931670.1;Name=WP_010931670.1;Note=Converts glycerol and ADP to glycerol-3-phosphate and ADP;gbkey=CDS;gene=glpK;product=glycerol kinase;protein_id=WP_010931670.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4057650 4058117 . - . ID=gene3875;Name=RD04_RS19380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19380;old_locus_tag=RD04_19340 NZ_CP010961.1 Protein Homology CDS 4057650 4058117 . - 0 ID=cds3811;Parent=gene3875;Dbxref=Genbank:WP_003815061.1;Name=WP_003815061.1;gbkey=CDS;product=membrane protein;protein_id=WP_003815061.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4058117 4059139 . - . ID=gene3876;Name=RD04_RS19385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19385;old_locus_tag=RD04_19345 NZ_CP010961.1 Protein Homology CDS 4058117 4059139 . - 0 ID=cds3812;Parent=gene3876;Dbxref=Genbank:WP_010931671.1;Name=WP_010931671.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931671.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4059260 4060000 . - . ID=gene3877;Name=RD04_RS19390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19390;old_locus_tag=RD04_19350 NZ_CP010961.1 Protein Homology CDS 4059260 4060000 . - 0 ID=cds3813;Parent=gene3877;Dbxref=Genbank:WP_003815064.1;Name=WP_003815064.1;gbkey=CDS;product=arginine ABC transporter ATP-binding protein;protein_id=WP_003815064.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4060055 4061155 . - . ID=gene3878;Name=RD04_RS19395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19395;old_locus_tag=RD04_19355 NZ_CP010961.1 Protein Homology CDS 4060055 4061155 . - 0 ID=cds3814;Parent=gene3878;Dbxref=Genbank:WP_003815066.1;Name=WP_003815066.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_003815066.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4061157 4062347 . - . ID=gene3879;Name=RD04_RS19400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19400;old_locus_tag=RD04_19360 NZ_CP010961.1 Protein Homology CDS 4061157 4062347 . - 0 ID=cds3815;Parent=gene3879;Dbxref=Genbank:WP_003815068.1;Name=WP_003815068.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_003815068.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4062467 4063483 . - . ID=gene3880;Name=RD04_RS19405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19405;old_locus_tag=RD04_19365 NZ_CP010961.1 Protein Homology CDS 4062467 4063483 . - 0 ID=cds3816;Parent=gene3880;Dbxref=Genbank:WP_003815070.1;Name=WP_003815070.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_003815070.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4063802 4064473 . + . ID=gene3881;Name=RD04_RS19410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19410;old_locus_tag=RD04_19370 NZ_CP010961.1 Protein Homology CDS 4063802 4064473 . + 0 ID=cds3817;Parent=gene3881;Dbxref=Genbank:WP_003815073.1;Name=WP_003815073.1;Note=ATP-binding protein of an ATP-binding cassette transporter%3B when bound to FtsX%2C FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions;gbkey=CDS;product=GMP synthase;protein_id=WP_003815073.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4064470 4065378 . + . ID=gene3882;Name=RD04_RS19415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19415;old_locus_tag=RD04_19375 NZ_CP010961.1 Protein Homology CDS 4064470 4065378 . + 0 ID=cds3818;Parent=gene3882;Dbxref=Genbank:WP_010927126.1;Name=WP_010927126.1;gbkey=CDS;product=permease;protein_id=WP_010927126.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4065590 4066237 . + . ID=gene3883;Name=RD04_RS19420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19420;old_locus_tag=RD04_19380 NZ_CP010961.1 Protein Homology CDS 4065590 4066237 . + 0 ID=cds3819;Parent=gene3883;Dbxref=Genbank:WP_010931672.1;Name=WP_010931672.1;gbkey=CDS;product=chemoreceptor glutamine deamidase CheD;protein_id=WP_010931672.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4066328 4069940 . - . ID=gene3884;Name=RD04_RS19425;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS19425;old_locus_tag=RD04_19385;pseudo=true NZ_CP010961.1 Protein Homology CDS 4066328 4069940 . - 0 ID=cds3820;Parent=gene3884;Note=Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates%3B frameshifted;gbkey=CDS;product=indolepyruvate ferredoxin oxidoreductase;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 4070098 4071165 . + . ID=gene3885;Name=RD04_RS19430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19430;old_locus_tag=RD04_19390 NZ_CP010961.1 Protein Homology CDS 4070098 4071165 . + 0 ID=cds3821;Parent=gene3885;Dbxref=Genbank:WP_033446142.1;Name=WP_033446142.1;gbkey=CDS;product=A/G-specific adenine glycosylase;protein_id=WP_033446142.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4071176 4071985 . - . ID=gene3886;Name=RD04_RS19435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19435;old_locus_tag=RD04_19395 NZ_CP010961.1 Protein Homology CDS 4071176 4071985 . - 0 ID=cds3822;Parent=gene3886;Dbxref=Genbank:WP_003815084.1;Name=WP_003815084.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_003815084.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4072075 4072848 . + . ID=gene3887;Name=RD04_RS19440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19440;old_locus_tag=RD04_19400 NZ_CP010961.1 Protein Homology CDS 4072075 4072848 . + 0 ID=cds3823;Parent=gene3887;Dbxref=Genbank:WP_003815086.1;Name=WP_003815086.1;gbkey=CDS;product=S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB;protein_id=WP_003815086.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4073079 4073981 . + . ID=gene3888;Name=RD04_RS19445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19445;old_locus_tag=RD04_19405 NZ_CP010961.1 GeneMarkS+ CDS 4073079 4073981 . + 0 ID=cds3824;Parent=gene3888;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4074128 4075030 . + . ID=gene3889;Name=RD04_RS19450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19450 NZ_CP010961.1 GeneMarkS+ CDS 4074128 4075030 . + 0 ID=cds3825;Parent=gene3889;Dbxref=Genbank:WP_023994703.1;Name=WP_023994703.1;gbkey=CDS;product=transposase;protein_id=WP_023994703.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4075042 4075941 . + . ID=gene3890;Name=RD04_RS19455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19455;old_locus_tag=RD04_19415 NZ_CP010961.1 GeneMarkS+ CDS 4075042 4075941 . + 0 ID=cds3826;Parent=gene3890;Dbxref=Genbank:WP_023853469.1;Name=WP_023853469.1;gbkey=CDS;product=CoA transferase;protein_id=WP_023853469.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4075931 4077085 . + . ID=gene3891;Name=RD04_RS19460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19460;old_locus_tag=RD04_19420 NZ_CP010961.1 Protein Homology CDS 4075931 4077085 . + 0 ID=cds3827;Parent=gene3891;Dbxref=Genbank:WP_010931674.1;Name=WP_010931674.1;gbkey=CDS;product=CoA transferase;protein_id=WP_010931674.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4077125 4078537 . + . ID=gene3892;Name=RD04_RS19465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19465;old_locus_tag=RD04_19425 NZ_CP010961.1 Protein Homology CDS 4077125 4078537 . + 0 ID=cds3828;Parent=gene3892;Dbxref=Genbank:WP_010931675.1;Name=WP_010931675.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010931675.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4078560 4079528 . + . ID=gene3893;Name=RD04_RS19470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19470;old_locus_tag=RD04_19430 NZ_CP010961.1 Protein Homology CDS 4078560 4079528 . + 0 ID=cds3829;Parent=gene3893;Dbxref=Genbank:WP_010931676.1;Name=WP_010931676.1;gbkey=CDS;product=lipoprotein;protein_id=WP_010931676.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4079530 4080354 . + . ID=gene3894;Name=RD04_RS19475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19475;old_locus_tag=RD04_19435 NZ_CP010961.1 Protein Homology CDS 4079530 4080354 . + 0 ID=cds3830;Parent=gene3894;Dbxref=Genbank:WP_010931677.1;Name=WP_010931677.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_010931677.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4080351 4081112 . + . ID=gene3895;Name=RD04_RS19480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19480;old_locus_tag=RD04_19440 NZ_CP010961.1 Protein Homology CDS 4080351 4081112 . + 0 ID=cds3831;Parent=gene3895;Dbxref=Genbank:WP_023853488.1;Name=WP_023853488.1;gbkey=CDS;product=nitroreductase;protein_id=WP_023853488.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4081193 4081879 . - . ID=gene3896;Name=RD04_RS19485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19485;old_locus_tag=RD04_19445 NZ_CP010961.1 Protein Homology CDS 4081193 4081879 . - 0 ID=cds3832;Parent=gene3896;Dbxref=Genbank:WP_003808010.1;Name=WP_003808010.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_003808010.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4082077 4083060 . + . ID=gene3897;Name=RD04_RS19490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19490;old_locus_tag=RD04_19450 NZ_CP010961.1 Protein Homology CDS 4082077 4083060 . + 0 ID=cds3833;Parent=gene3897;Dbxref=Genbank:WP_023853465.1;Name=WP_023853465.1;gbkey=CDS;product=hydroxymethylglutaryl-CoA lyase;protein_id=WP_023853465.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4083057 4083836 . + . ID=gene3898;Name=RD04_RS19495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19495;old_locus_tag=RD04_19455 NZ_CP010961.1 Protein Homology CDS 4083057 4083836 . + 0 ID=cds3834;Parent=gene3898;Dbxref=Genbank:WP_003819309.1;Name=WP_003819309.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_003819309.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4083924 4085156 . + . ID=gene3899;Name=RD04_RS19500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19500;old_locus_tag=RD04_19460 NZ_CP010961.1 Protein Homology CDS 4083924 4085156 . + 0 ID=cds3835;Parent=gene3899;Dbxref=Genbank:WP_033446165.1;Name=WP_033446165.1;gbkey=CDS;product=CoA transferase;protein_id=WP_033446165.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4085255 4085707 . + . ID=gene3900;Name=RD04_RS19505;end_range=4085707,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RD04_RS19505;old_locus_tag=RD04_19465;partial=true;pseudo=true NZ_CP010961.1 Protein Homology CDS 4085255 4085707 . + 0 ID=cds3836;Parent=gene3900;Note=incomplete%3B partial in the middle of a contig%3B missing stop;end_range=4085707,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP010961.1 RefSeq gene 4085703 4086605 . - . ID=gene3901;Name=RD04_RS19510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19510;old_locus_tag=RD04_19470 NZ_CP010961.1 GeneMarkS+ CDS 4085703 4086605 . - 0 ID=cds3837;Parent=gene3901;Dbxref=Genbank:WP_033475354.1;Name=WP_033475354.1;gbkey=CDS;product=integrase;protein_id=WP_033475354.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4086785 4088224 . + . ID=gene3902;Name=RD04_RS19515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19515;old_locus_tag=RD04_19475 NZ_CP010961.1 Protein Homology CDS 4086785 4088224 . + 0 ID=cds3838;Parent=gene3902;Dbxref=Genbank:WP_003816030.1;Name=WP_003816030.1;gbkey=CDS;product=catalase;protein_id=WP_003816030.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4088285 4089166 . - . ID=gene3903;Name=RD04_RS19520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19520;old_locus_tag=RD04_19480 NZ_CP010961.1 Protein Homology CDS 4088285 4089166 . - 0 ID=cds3839;Parent=gene3903;Dbxref=Genbank:WP_010927255.1;Name=WP_010927255.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010927255.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4089163 4089978 . - . ID=gene3904;Name=RD04_RS19525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19525;old_locus_tag=RD04_19485 NZ_CP010961.1 Protein Homology CDS 4089163 4089978 . - 0 ID=cds3840;Parent=gene3904;Dbxref=Genbank:WP_010931681.1;Name=WP_010931681.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_010931681.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4089980 4091023 . - . ID=gene3905;Name=RD04_RS19530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19530;old_locus_tag=RD04_19490 NZ_CP010961.1 Protein Homology CDS 4089980 4091023 . - 0 ID=cds3841;Parent=gene3905;Dbxref=Genbank:WP_010931682.1;Name=WP_010931682.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_010931682.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4091067 4091990 . - . ID=gene3906;Name=RD04_RS19535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19535;old_locus_tag=RD04_19495 NZ_CP010961.1 Protein Homology CDS 4091067 4091990 . - 0 ID=cds3842;Parent=gene3906;Dbxref=Genbank:WP_003816037.1;Name=WP_003816037.1;gbkey=CDS;product=taurine dioxygenase;protein_id=WP_003816037.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4092120 4093319 . - . ID=gene3907;Name=RD04_RS19540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19540;old_locus_tag=RD04_19500 NZ_CP010961.1 Protein Homology CDS 4092120 4093319 . - 0 ID=cds3843;Parent=gene3907;Dbxref=Genbank:WP_003816039.1;Name=WP_003816039.1;gbkey=CDS;product=hydrolase;protein_id=WP_003816039.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4093377 4094393 . - . ID=gene3908;Name=RD04_RS19545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19545;old_locus_tag=RD04_19505 NZ_CP010961.1 Protein Homology CDS 4093377 4094393 . - 0 ID=cds3844;Parent=gene3908;Dbxref=Genbank:WP_010931683.1;Name=WP_010931683.1;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=WP_010931683.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4094390 4095391 . - . ID=gene3909;Name=RD04_RS19550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19550;old_locus_tag=RD04_19510 NZ_CP010961.1 Protein Homology CDS 4094390 4095391 . - 0 ID=cds3845;Parent=gene3909;Dbxref=Genbank:WP_010931684.1;Name=WP_010931684.1;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_010931684.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4095418 4096338 . - . ID=gene3910;Name=RD04_RS19555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19555;old_locus_tag=RD04_19515 NZ_CP010961.1 Protein Homology CDS 4095418 4096338 . - 0 ID=cds3846;Parent=gene3910;Dbxref=Genbank:WP_010931685.1;Name=WP_010931685.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_010931685.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4096335 4097309 . - . ID=gene3911;Name=RD04_RS19560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19560;old_locus_tag=RD04_19520 NZ_CP010961.1 Protein Homology CDS 4096335 4097309 . - 0 ID=cds3847;Parent=gene3911;Dbxref=Genbank:WP_010931686.1;Name=WP_010931686.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_010931686.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4097329 4098915 . - . ID=gene3912;Name=RD04_RS19565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19565;old_locus_tag=RD04_19525 NZ_CP010961.1 Protein Homology CDS 4097329 4098915 . - 0 ID=cds3848;Parent=gene3912;Dbxref=Genbank:WP_003816050.1;Name=WP_003816050.1;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_003816050.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4099032 4100384 . + . ID=gene3913;Name=RD04_RS19570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19570;old_locus_tag=RD04_19530 NZ_CP010961.1 Protein Homology CDS 4099032 4100384 . + 0 ID=cds3849;Parent=gene3913;Dbxref=Genbank:WP_010931687.1;Name=WP_010931687.1;gbkey=CDS;product=tRNA uridine(34) 5-carboxymethylaminomethyl synthesis GTPase MnmE;protein_id=WP_010931687.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4100329 4101603 . - . ID=gene3914;Name=RD04_RS19575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19575;old_locus_tag=RD04_19535 NZ_CP010961.1 Protein Homology CDS 4100329 4101603 . - 0 ID=cds3850;Parent=gene3914;Dbxref=Genbank:WP_019248780.1;Name=WP_019248780.1;gbkey=CDS;product=membrane protein;protein_id=WP_019248780.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4102161 4102841 . + . ID=gene3915;Name=RD04_RS19580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19580;old_locus_tag=RD04_19540 NZ_CP010961.1 Protein Homology CDS 4102161 4102841 . + 0 ID=cds3851;Parent=gene3915;Dbxref=Genbank:WP_010931689.1;Name=WP_010931689.1;Note=transcriptional activator of tricarboxylate transport system genes;gbkey=CDS;product=DNA-binding response regulator;protein_id=WP_010931689.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4102915 4104291 . + . ID=gene3916;Name=RD04_RS19585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19585;old_locus_tag=RD04_19545 NZ_CP010961.1 Protein Homology CDS 4102915 4104291 . + 0 ID=cds3852;Parent=gene3916;Dbxref=Genbank:WP_042145827.1;Name=WP_042145827.1;gbkey=CDS;product=histidine kinase;protein_id=WP_042145827.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4104412 4105416 . + . ID=gene3917;Name=RD04_RS19590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19590;old_locus_tag=RD04_19550 NZ_CP010961.1 Protein Homology CDS 4104412 4105416 . + 0 ID=cds3853;Parent=gene3917;Dbxref=Genbank:WP_010931690.1;Name=WP_010931690.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter substrate-binding protein;protein_id=WP_010931690.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4105521 4105958 . + . ID=gene3918;Name=RD04_RS19595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19595;old_locus_tag=RD04_19555 NZ_CP010961.1 Protein Homology CDS 4105521 4105958 . + 0 ID=cds3854;Parent=gene3918;Dbxref=Genbank:WP_033446144.1;Name=WP_033446144.1;gbkey=CDS;product=membrane protein;protein_id=WP_033446144.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4105955 4107478 . + . ID=gene3919;Name=RD04_RS19600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19600;old_locus_tag=RD04_19560 NZ_CP010961.1 Protein Homology CDS 4105955 4107478 . + 0 ID=cds3855;Parent=gene3919;Dbxref=Genbank:WP_010931692.1;Name=WP_010931692.1;gbkey=CDS;product=membrane protein;protein_id=WP_010931692.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4107554 4108720 . - . ID=gene3920;Name=RD04_RS19605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19605;old_locus_tag=RD04_19565 NZ_CP010961.1 Protein Homology CDS 4107554 4108720 . - 0 ID=cds3856;Parent=gene3920;Dbxref=Genbank:WP_010931693.1;Name=WP_010931693.1;gbkey=CDS;product=aminotransferase;protein_id=WP_010931693.1;transl_table=11 NZ_CP010961.1 RefSeq gene 4109120 4109326 . + . ID=gene3921;Name=RD04_RS19610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RD04_RS19610;old_locus_tag=RD04_19570 NZ_CP010961.1 Protein Homology CDS 4109120 4109326 . + 0 ID=cds3857;Parent=gene3921;Dbxref=Genbank:WP_010931694.1;Name=WP_010931694.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_010931694.1;transl_table=11 ###