locus-tag class description RD05_RS00005 PF01134 Glucose inhibited division protein A RD05_RS00005 PF13932 GidA associated domain RD05_RS00010 PF02527 rRNA small subunit methyltransferase G RD05_RS00015 PF13614 AAA domain RD05_RS00025 PF17762 HTH domain found in ParB protein RD05_RS00025 PF02195 ParB-like nuclease domain RD05_RS00030 PF00710 Asparaginase, N-terminal RD05_RS00030 PF17763 Glutaminase/Asparaginase C-terminal domain RD05_RS00035 PF17763 Glutaminase/Asparaginase C-terminal domain RD05_RS00035 PF00710 Asparaginase, N-terminal RD05_RS00055 PF03144 Elongation factor Tu domain 2 RD05_RS00055 PF03143 Elongation factor Tu C-terminal domain RD05_RS00055 PF00009 Elongation factor Tu GTP binding domain RD05_RS00065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RD05_RS00070 PF02357 Transcription termination factor nusG RD05_RS00070 PF00467 KOW motif RD05_RS00075 PF03946 Ribosomal protein L11, N-terminal domain RD05_RS00075 PF00298 Ribosomal protein L11, RNA binding domain RD05_RS00080 PF00687 Ribosomal protein L1p/L10e family RD05_RS00085 PF00466 Ribosomal protein L10 RD05_RS00090 PF16320 Ribosomal protein L7/L12 dimerisation domain RD05_RS00090 PF00542 Ribosomal protein L7/L12 C-terminal domain RD05_RS00095 PF04560 RNA polymerase Rpb2, domain 7 RD05_RS00095 PF04565 RNA polymerase Rpb2, domain 3 RD05_RS00095 PF10385 RNA polymerase beta subunit external 1 domain RD05_RS00095 PF04563 RNA polymerase beta subunit RD05_RS00095 PF04561 RNA polymerase Rpb2, domain 2 RD05_RS00095 PF00562 RNA polymerase Rpb2, domain 6 RD05_RS00100 PF00623 RNA polymerase Rpb1, domain 2 RD05_RS00100 PF04983 RNA polymerase Rpb1, domain 3 RD05_RS00100 PF04997 RNA polymerase Rpb1, domain 1 RD05_RS00100 PF04998 RNA polymerase Rpb1, domain 5 RD05_RS00100 PF05000 RNA polymerase Rpb1, domain 4 RD05_RS00130 PF00486 Transcriptional regulatory protein, C terminal RD05_RS00130 PF00072 Response regulator receiver domain RD05_RS00140 PF02515 CoA-transferase family III RD05_RS00155 PF01575 MaoC like domain RD05_RS00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS00160 PF03466 LysR substrate binding domain RD05_RS00165 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS00185 PF02091 Glycyl-tRNA synthetase alpha subunit RD05_RS00190 PF05746 DALR anticodon binding domain RD05_RS00190 PF02092 Glycyl-tRNA synthetase beta subunit RD05_RS00200 PF01553 Acyltransferase RD05_RS00210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD05_RS00215 PF01327 Polypeptide deformylase RD05_RS00250 PF02615 Malate/L-lactate dehydrogenase RD05_RS00255 PF00561 alpha/beta hydrolase fold RD05_RS00260 PF07021 Methionine biosynthesis protein MetW RD05_RS00260 PF00561 alpha/beta hydrolase fold RD05_RS00270 PF07690 Major Facilitator Superfamily RD05_RS00280 PF01177 Asp/Glu/Hydantoin racemase RD05_RS00285 PF00005 ABC transporter RD05_RS00290 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS00295 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS00300 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS00330 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS00345 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS00345 PF00175 Oxidoreductase NAD-binding domain RD05_RS00345 PF00970 Oxidoreductase FAD-binding domain RD05_RS00350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD05_RS00360 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS00390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS00390 PF00183 Hsp90 protein RD05_RS00395 PF00043 Glutathione S-transferase, C-terminal domain RD05_RS00395 PF13417 Glutathione S-transferase, N-terminal domain RD05_RS00400 PF01510 N-acetylmuramoyl-L-alanine amidase RD05_RS00410 PF01578 Cytochrome C assembly protein RD05_RS00415 PF00448 SRP54-type protein, GTPase domain RD05_RS00415 PF02881 SRP54-type protein, helical bundle domain RD05_RS00415 PF02978 Signal peptide binding domain RD05_RS00430 PF02719 Polysaccharide biosynthesis protein RD05_RS00440 PF10997 Alternate to MurJ RD05_RS00445 PF00534 Glycosyl transferases group 1 RD05_RS00445 PF00862 Sucrose synthase RD05_RS00450 PF02397 Bacterial sugar transferase RD05_RS00455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD05_RS00465 PF02350 UDP-N-acetylglucosamine 2-epimerase RD05_RS00470 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD05_RS00475 PF00132 Bacterial transferase hexapeptide (six repeats) RD05_RS00480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RD05_RS00480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RD05_RS00485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD05_RS00490 PF00534 Glycosyl transferases group 1 RD05_RS00490 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RD05_RS00500 PF03309 Type III pantothenate kinase RD05_RS00510 PF02405 Permease MlaE RD05_RS00515 PF00005 ABC transporter RD05_RS00540 PF07943 Penicillin-binding protein 5, C-terminal domain RD05_RS00540 PF00768 D-alanyl-D-alanine carboxypeptidase RD05_RS00545 PF01063 Amino-transferase class IV RD05_RS00550 PF04359 Protein of unknown function (DUF493) RD05_RS00555 PF03099 Biotin/lipoate A/B protein ligase family RD05_RS00560 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RD05_RS00560 PF04055 Radical SAM superfamily RD05_RS00565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RD05_RS00570 PF04321 RmlD substrate binding domain RD05_RS00575 PF16363 GDP-mannose 4,6 dehydratase RD05_RS00585 PF01810 LysE type translocator RD05_RS00590 PF01053 Cys/Met metabolism PLP-dependent enzyme RD05_RS00595 PF00085 Thioredoxin RD05_RS00595 PF01323 DSBA-like thioredoxin domain RD05_RS00605 PF03485 Arginyl tRNA synthetase N terminal domain RD05_RS00605 PF05746 DALR anticodon binding domain RD05_RS00605 PF00750 tRNA synthetases class I (R) RD05_RS00625 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS00630 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS00635 PF13416 Bacterial extracellular solute-binding protein RD05_RS00640 PF00005 ABC transporter RD05_RS00640 PF17912 MalK OB fold domain RD05_RS00645 PF00149 Calcineurin-like phosphoesterase RD05_RS00655 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RD05_RS00655 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RD05_RS00670 PF00355 Rieske [2Fe-2S] domain RD05_RS00680 PF02653 Branched-chain amino acid transport system / permease component RD05_RS00690 PF00005 ABC transporter RD05_RS00700 PF13458 Periplasmic binding protein RD05_RS00705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS00705 PF03466 LysR substrate binding domain RD05_RS00715 PF01425 Amidase RD05_RS00720 PF00175 Oxidoreductase NAD-binding domain RD05_RS00720 PF00970 Oxidoreductase FAD-binding domain RD05_RS00720 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS00725 PF09297 NADH pyrophosphatase zinc ribbon domain RD05_RS00725 PF00293 NUDIX domain RD05_RS00730 PF00440 Bacterial regulatory proteins, tetR family RD05_RS00735 PF02515 CoA-transferase family III RD05_RS00740 PF00698 Acyl transferase domain RD05_RS00740 PF08659 KR domain RD05_RS00740 PF02801 Beta-ketoacyl synthase, C-terminal domain RD05_RS00740 PF00109 Beta-ketoacyl synthase, N-terminal domain RD05_RS00740 PF08990 Erythronolide synthase docking RD05_RS00740 PF08240 Alcohol dehydrogenase GroES-like domain RD05_RS00740 PF00550 Phosphopantetheine attachment site RD05_RS00740 PF14765 Polyketide synthase dehydratase RD05_RS00740 PF16197 Ketoacyl-synthetase C-terminal extension RD05_RS00745 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS00750 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS00755 PF00005 ABC transporter RD05_RS00765 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS00770 PF00392 Bacterial regulatory proteins, gntR family RD05_RS00770 PF07702 UTRA domain RD05_RS00780 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS00785 PF07702 UTRA domain RD05_RS00785 PF00392 Bacterial regulatory proteins, gntR family RD05_RS00800 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS00805 PF00682 HMGL-like RD05_RS00820 PF02390 Putative methyltransferase RD05_RS00825 PF00561 alpha/beta hydrolase fold RD05_RS00830 PF02597 ThiS family RD05_RS00830 PF05690 Thiazole biosynthesis protein ThiG RD05_RS00835 PF04972 BON domain RD05_RS00835 PF01476 LysM domain RD05_RS00845 PF00701 Dihydrodipicolinate synthetase family RD05_RS00850 PF13185 GAF domain RD05_RS00855 PF00155 Aminotransferase class I and II RD05_RS00860 PF01040 UbiA prenyltransferase family RD05_RS00875 PF00392 Bacterial regulatory proteins, gntR family RD05_RS00875 PF07729 FCD domain RD05_RS00880 PF01274 Malate synthase RD05_RS00900 PF00005 ABC transporter RD05_RS00905 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS00915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS00915 PF03466 LysR substrate binding domain RD05_RS00925 PF13439 Glycosyltransferase Family 4 RD05_RS00925 PF00534 Glycosyl transferases group 1 RD05_RS00930 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS00935 PF01979 Amidohydrolase family RD05_RS00940 PF03466 LysR substrate binding domain RD05_RS00940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS00950 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS00960 PF03328 HpcH/HpaI aldolase/citrate lyase family RD05_RS00970 PF07715 TonB-dependent Receptor Plug Domain RD05_RS00970 PF00593 TonB dependent receptor RD05_RS00975 PF00436 Single-strand binding protein family RD05_RS00980 PF07690 Major Facilitator Superfamily RD05_RS00985 PF17755 UvrA DNA-binding domain RD05_RS00985 PF17760 UvrA interaction domain RD05_RS00990 PF13417 Glutathione S-transferase, N-terminal domain RD05_RS00990 PF00043 Glutathione S-transferase, C-terminal domain RD05_RS00995 PF01966 HD domain RD05_RS00995 PF13286 Phosphohydrolase-associated domain RD05_RS01000 PF01761 3-dehydroquinate synthase RD05_RS01005 PF01202 Shikimate kinase RD05_RS01010 PF17092 Penicillin-binding protein OB-like domain RD05_RS01010 PF00912 Transglycosylase RD05_RS01010 PF00905 Penicillin binding protein transpeptidase domain RD05_RS01015 PF01491 Frataxin-like domain RD05_RS01020 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD05_RS01020 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RD05_RS01025 PF01578 Cytochrome C assembly protein RD05_RS01030 PF05140 ResB-like family RD05_RS01035 PF00034 Cytochrome c RD05_RS01040 PF01926 50S ribosome-binding GTPase RD05_RS01045 PF00490 Delta-aminolevulinic acid dehydratase RD05_RS01050 PF00892 EamA-like transporter family RD05_RS01055 PF02683 Cytochrome C biogenesis protein transmembrane region RD05_RS01055 PF11412 Disulphide bond corrector protein DsbC RD05_RS01060 PF03091 CutA1 divalent ion tolerance protein RD05_RS01065 PF01230 HIT domain RD05_RS01070 PF01196 Ribosomal protein L17 RD05_RS01075 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RD05_RS01075 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RD05_RS01075 PF01000 RNA polymerase Rpb3/RpoA insert domain RD05_RS01080 PF01479 S4 domain RD05_RS01080 PF00163 Ribosomal protein S4/S9 N-terminal domain RD05_RS01085 PF00411 Ribosomal protein S11 RD05_RS01090 PF00416 Ribosomal protein S13/S18 RD05_RS01095 PF00444 Ribosomal protein L36 RD05_RS01100 PF01176 Translation initiation factor 1A / IF-1 RD05_RS01105 PF00344 SecY translocase RD05_RS01110 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RD05_RS01115 PF00327 Ribosomal protein L30p/L7e RD05_RS01120 PF00333 Ribosomal protein S5, N-terminal domain RD05_RS01120 PF03719 Ribosomal protein S5, C-terminal domain RD05_RS01125 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RD05_RS01130 PF00347 Ribosomal protein L6 RD05_RS01135 PF00410 Ribosomal protein S8 RD05_RS01140 PF00253 Ribosomal protein S14p/S29e RD05_RS01145 PF00281 Ribosomal protein L5 RD05_RS01145 PF00673 ribosomal L5P family C-terminus RD05_RS01150 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RD05_RS01155 PF00238 Ribosomal protein L14p/L23e RD05_RS01165 PF00171 Aldehyde dehydrogenase family RD05_RS01175 PF00366 Ribosomal protein S17 RD05_RS01180 PF00831 Ribosomal L29 protein RD05_RS01185 PF00252 Ribosomal protein L16p/L10e RD05_RS01190 PF07650 KH domain RD05_RS01190 PF00189 Ribosomal protein S3, C-terminal domain RD05_RS01195 PF00237 Ribosomal protein L22p/L17e RD05_RS01200 PF00203 Ribosomal protein S19 RD05_RS01205 PF03947 Ribosomal Proteins L2, C-terminal domain RD05_RS01205 PF00181 Ribosomal Proteins L2, RNA binding domain RD05_RS01210 PF00276 Ribosomal protein L23 RD05_RS01215 PF00573 Ribosomal protein L4/L1 family RD05_RS01220 PF00297 Ribosomal protein L3 RD05_RS01225 PF00338 Ribosomal protein S10p/S20e RD05_RS01230 PF03144 Elongation factor Tu domain 2 RD05_RS01230 PF00009 Elongation factor Tu GTP binding domain RD05_RS01230 PF03143 Elongation factor Tu C-terminal domain RD05_RS01235 PF14492 Elongation Factor G, domain II RD05_RS01235 PF00009 Elongation factor Tu GTP binding domain RD05_RS01235 PF03764 Elongation factor G, domain IV RD05_RS01235 PF00679 Elongation factor G C-terminus RD05_RS01235 PF03144 Elongation factor Tu domain 2 RD05_RS01240 PF00177 Ribosomal protein S7p/S5e RD05_RS01245 PF00164 Ribosomal protein S12/S23 RD05_RS01255 PF07885 Ion channel RD05_RS01255 PF02254 TrkA-N domain RD05_RS01265 PF01594 AI-2E family transporter RD05_RS01275 PF01467 Cytidylyltransferase-like RD05_RS01280 PF02321 Outer membrane efflux protein RD05_RS01295 PF08543 Phosphomethylpyrimidine kinase RD05_RS01300 PF05690 Thiazole biosynthesis protein ThiG RD05_RS01305 PF01497 Periplasmic binding protein RD05_RS01310 PF07715 TonB-dependent Receptor Plug Domain RD05_RS01310 PF00593 TonB dependent receptor RD05_RS01315 PF02965 Vitamin B12 dependent methionine synthase, activation domain RD05_RS01315 PF02607 B12 binding domain RD05_RS01315 PF02310 B12 binding domain RD05_RS01315 PF02574 Homocysteine S-methyltransferase RD05_RS01315 PF00809 Pterin binding enzyme RD05_RS01330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD05_RS01340 PF01062 Bestrophin, RFP-TM, chloride channel RD05_RS01345 PF01037 Lrp/AsnC ligand binding domain RD05_RS01350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD05_RS01350 PF00205 Thiamine pyrophosphate enzyme, central domain RD05_RS01350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD05_RS01360 PF00171 Aldehyde dehydrogenase family RD05_RS01370 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS01375 PF00005 ABC transporter RD05_RS01385 PF01751 Toprim domain RD05_RS01385 PF01131 DNA topoisomerase RD05_RS01400 PF04361 Protein of unknown function (DUF494) RD05_RS01405 PF00593 TonB dependent receptor RD05_RS01405 PF07715 TonB-dependent Receptor Plug Domain RD05_RS01415 PF16868 NMT1-like family RD05_RS01420 PF14031 Putative serine dehydratase domain RD05_RS01420 PF01168 Alanine racemase, N-terminal domain RD05_RS01425 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS01430 PF00202 Aminotransferase class-III RD05_RS01440 PF00364 Biotin-requiring enzyme RD05_RS01440 PF00289 Biotin carboxylase, N-terminal domain RD05_RS01440 PF02785 Biotin carboxylase C-terminal domain RD05_RS01440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD05_RS01445 PF01039 Carboxyl transferase domain RD05_RS01450 PF02803 Thiolase, C-terminal domain RD05_RS01450 PF00108 Thiolase, N-terminal domain RD05_RS01460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS01460 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS01460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS01475 PF00376 MerR family regulatory protein RD05_RS01475 PF09278 MerR, DNA binding RD05_RS01480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS01480 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS01480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS01500 PF01070 FMN-dependent dehydrogenase RD05_RS01510 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS01515 PF01425 Amidase RD05_RS01520 PF09339 IclR helix-turn-helix domain RD05_RS01520 PF01614 Bacterial transcriptional regulator RD05_RS01525 PF00204 DNA gyrase B RD05_RS01525 PF00986 DNA gyrase B subunit, carboxyl terminus RD05_RS01525 PF18053 DNA gyrase B subunit insert domain RD05_RS01525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS01525 PF01751 Toprim domain RD05_RS01530 PF00712 DNA polymerase III beta subunit, N-terminal domain RD05_RS01530 PF02768 DNA polymerase III beta subunit, C-terminal domain RD05_RS01530 PF02767 DNA polymerase III beta subunit, central domain RD05_RS01535 PF11638 DnaA N-terminal domain RD05_RS01535 PF08299 Bacterial dnaA protein helix-turn-helix RD05_RS01535 PF00308 Bacterial dnaA protein RD05_RS01540 PF00468 Ribosomal protein L34 RD05_RS01545 PF00825 Ribonuclease P RD05_RS01550 PF01809 Putative membrane protein insertion efficiency factor RD05_RS01555 PF02096 60Kd inner membrane protein RD05_RS01555 PF14849 YidC periplasmic domain RD05_RS01565 PF02525 Flavodoxin-like fold RD05_RS01570 PF03466 LysR substrate binding domain RD05_RS01570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS01585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS01585 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS01590 PF00589 Phage integrase family RD05_RS01625 PF03837 RecT family RD05_RS01670 PF01042 Endoribonuclease L-PSP RD05_RS01680 PF01145 SPFH domain / Band 7 family RD05_RS01685 PF07411 Domain of unknown function (DUF1508) RD05_RS01690 PF01168 Alanine racemase, N-terminal domain RD05_RS01690 PF14031 Putative serine dehydratase domain RD05_RS01700 PF03466 LysR substrate binding domain RD05_RS01700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS01720 PF12951 Passenger-associated-transport-repeat RD05_RS01720 PF12951 Passenger-associated-transport-repeat RD05_RS01730 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS01735 PF13193 AMP-binding enzyme C-terminal domain RD05_RS01735 PF00501 AMP-binding enzyme RD05_RS01740 PF09339 IclR helix-turn-helix domain RD05_RS01740 PF01614 Bacterial transcriptional regulator RD05_RS01745 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS01750 PF02627 Carboxymuconolactone decarboxylase family RD05_RS01755 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS01765 PF00491 Arginase family RD05_RS01770 PF00202 Aminotransferase class-III RD05_RS01780 PF00392 Bacterial regulatory proteins, gntR family RD05_RS01780 PF07729 FCD domain RD05_RS01785 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS01790 PF01266 FAD dependent oxidoreductase RD05_RS01795 PF01361 Tautomerase enzyme RD05_RS01800 PF04055 Radical SAM superfamily RD05_RS01800 PF18693 TRAM domain RD05_RS01800 PF00919 Uncharacterized protein family UPF0004 RD05_RS01810 PF03641 Possible lysine decarboxylase RD05_RS01820 PF13419 Haloacid dehalogenase-like hydrolase RD05_RS01830 PF00551 Formyl transferase RD05_RS01830 PF02911 Formyl transferase, C-terminal domain RD05_RS01840 PF01327 Polypeptide deformylase RD05_RS01845 PF00266 Aminotransferase class-V RD05_RS01850 PF01037 Lrp/AsnC ligand binding domain RD05_RS01855 PF17782 DprA winged helix domain RD05_RS01855 PF02481 DNA recombination-mediator protein A RD05_RS01860 PF00682 HMGL-like RD05_RS01870 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS01875 PF00155 Aminotransferase class I and II RD05_RS01880 PF01168 Alanine racemase, N-terminal domain RD05_RS01885 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS01895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS01895 PF03466 LysR substrate binding domain RD05_RS01900 PF01810 LysE type translocator RD05_RS01920 PF03447 Homoserine dehydrogenase, NAD binding domain RD05_RS01920 PF01958 Domain of unknown function DUF108 RD05_RS01930 PF01029 NusB family RD05_RS01930 PF01189 16S rRNA methyltransferase RsmB/F RD05_RS01940 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS01940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS01940 PF00989 PAS fold RD05_RS01940 PF00672 HAMP domain RD05_RS01945 PF02954 Bacterial regulatory protein, Fis family RD05_RS01945 PF00158 Sigma-54 interaction domain RD05_RS01945 PF00072 Response regulator receiver domain RD05_RS01950 PF02254 TrkA-N domain RD05_RS01950 PF02080 TrkA-C domain RD05_RS01955 PF02386 Cation transport protein RD05_RS01960 PF01047 MarR family RD05_RS01970 PF12804 MobA-like NTP transferase domain RD05_RS01980 PF17645 Arylmalonate decarboxylase RD05_RS01985 PF00561 alpha/beta hydrolase fold RD05_RS01995 PF00857 Isochorismatase family RD05_RS02005 PF00355 Rieske [2Fe-2S] domain RD05_RS02005 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD05_RS02010 PF14759 Reductase C-terminal RD05_RS02010 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS02015 PF00355 Rieske [2Fe-2S] domain RD05_RS02020 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS02025 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD05_RS02025 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD05_RS02030 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD05_RS02030 PF00941 FAD binding domain in molybdopterin dehydrogenase RD05_RS02035 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS02035 PF01799 [2Fe-2S] binding domain RD05_RS02045 PF00005 ABC transporter RD05_RS02050 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS02060 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD05_RS02065 PF04107 Glutamate-cysteine ligase family 2(GCS2) RD05_RS02070 PF08241 Methyltransferase domain RD05_RS02080 PF00588 SpoU rRNA Methylase family RD05_RS02085 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS02090 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RD05_RS02090 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RD05_RS02095 PF02556 Preprotein translocase subunit SecB RD05_RS02100 PF00462 Glutaredoxin RD05_RS02105 PF17773 UPF0176 acylphosphatase like domain RD05_RS02105 PF00581 Rhodanese-like domain RD05_RS02105 PF12368 Rhodanase C-terminal RD05_RS02110 PF00300 Histidine phosphatase superfamily (branch 1) RD05_RS02115 PF01551 Peptidase family M23 RD05_RS02120 PF03572 Peptidase family S41 RD05_RS02120 PF13180 PDZ domain RD05_RS02125 PF00899 ThiF family RD05_RS02135 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS02150 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS02165 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS02165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD05_RS02170 PF00005 ABC transporter RD05_RS02175 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD05_RS02175 PF00005 ABC transporter RD05_RS02180 PF02653 Branched-chain amino acid transport system / permease component RD05_RS02185 PF13458 Periplasmic binding protein RD05_RS02195 PF00501 AMP-binding enzyme RD05_RS02195 PF13193 AMP-binding enzyme C-terminal domain RD05_RS02200 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS02200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS02200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS02205 PF02817 e3 binding domain RD05_RS02205 PF00364 Biotin-requiring enzyme RD05_RS02205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD05_RS02210 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS02215 PF02779 Transketolase, pyrimidine binding domain RD05_RS02215 PF02780 Transketolase, C-terminal domain RD05_RS02220 PF00676 Dehydrogenase E1 component RD05_RS02230 PF13380 CoA binding domain RD05_RS02230 PF13607 Succinyl-CoA ligase like flavodoxin domain RD05_RS02235 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS02240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS02240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS02240 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS02245 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS02250 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD05_RS02250 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD05_RS02265 PF01575 MaoC like domain RD05_RS02270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS02270 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS02270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS02275 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS02280 PF02515 CoA-transferase family III RD05_RS02285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS02285 PF03466 LysR substrate binding domain RD05_RS02290 PF00701 Dihydrodipicolinate synthetase family RD05_RS02310 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS02315 PF03466 LysR substrate binding domain RD05_RS02315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS02320 PF01565 FAD binding domain RD05_RS02320 PF09330 D-lactate dehydrogenase, membrane binding RD05_RS02325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS02325 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS02325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS02330 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS02330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS02330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS02335 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS02340 PF07687 Peptidase dimerisation domain RD05_RS02340 PF01546 Peptidase family M20/M25/M40 RD05_RS02350 PF01042 Endoribonuclease L-PSP RD05_RS02360 PF08240 Alcohol dehydrogenase GroES-like domain RD05_RS02360 PF00107 Zinc-binding dehydrogenase RD05_RS02365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS02365 PF03466 LysR substrate binding domain RD05_RS02370 PF13380 CoA binding domain RD05_RS02370 PF13607 Succinyl-CoA ligase like flavodoxin domain RD05_RS02375 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS02385 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS02390 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RD05_RS02395 PF01380 SIS domain RD05_RS02400 PF01037 Lrp/AsnC ligand binding domain RD05_RS02405 PF00108 Thiolase, N-terminal domain RD05_RS02405 PF02803 Thiolase, C-terminal domain RD05_RS02410 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD05_RS02410 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD05_RS02410 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS02415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS02415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS02415 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD05_RS02415 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS02420 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS02425 PF00583 Acetyltransferase (GNAT) family RD05_RS02425 PF13607 Succinyl-CoA ligase like flavodoxin domain RD05_RS02425 PF13380 CoA binding domain RD05_RS02440 PF00384 Molybdopterin oxidoreductase RD05_RS02440 PF01568 Molydopterin dinucleotide binding domain RD05_RS02460 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RD05_RS02460 PF01488 Shikimate / quinate 5-dehydrogenase RD05_RS02460 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RD05_RS02465 PF03462 PCRF domain RD05_RS02465 PF00472 RF-1 domain RD05_RS02470 PF17827 PrmC N-terminal domain RD05_RS02470 PF05175 Methyltransferase small domain RD05_RS02475 PF00462 Glutaredoxin RD05_RS02480 PF02441 Flavoprotein RD05_RS02485 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS02490 PF09084 NMT1/THI5 like RD05_RS02495 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD05_RS02495 PF00941 FAD binding domain in molybdopterin dehydrogenase RD05_RS02500 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS02500 PF01799 [2Fe-2S] binding domain RD05_RS02505 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD05_RS02505 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD05_RS02525 PF05036 Sporulation related domain RD05_RS02525 PF03330 Lytic transglycolase RD05_RS02530 PF03668 P-loop ATPase protein family RD05_RS02540 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD05_RS02540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD05_RS02540 PF00034 Cytochrome c RD05_RS02545 PF07475 HPr Serine kinase C-terminal domain RD05_RS02545 PF02603 HPr Serine kinase N terminus RD05_RS02550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RD05_RS02555 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RD05_RS02560 PF00005 ABC transporter RD05_RS02580 PF00571 CBS domain RD05_RS02580 PF01380 SIS domain RD05_RS02585 PF01370 NAD dependent epimerase/dehydratase family RD05_RS02585 PF02222 ATP-grasp domain RD05_RS02590 PF07715 TonB-dependent Receptor Plug Domain RD05_RS02590 PF00593 TonB dependent receptor RD05_RS02600 PF00732 GMC oxidoreductase RD05_RS02600 PF05199 GMC oxidoreductase RD05_RS02620 PF01336 OB-fold nucleic acid binding domain RD05_RS02620 PF02938 GAD domain RD05_RS02620 PF00152 tRNA synthetases class II (D, K and N) RD05_RS02625 PF03372 Endonuclease/Exonuclease/phosphatase family RD05_RS02630 PF13091 PLD-like domain RD05_RS02655 PF13458 Periplasmic binding protein RD05_RS02660 PF01425 Amidase RD05_RS02665 PF05995 Cysteine dioxygenase type I RD05_RS02670 PF09339 IclR helix-turn-helix domain RD05_RS02670 PF01614 Bacterial transcriptional regulator RD05_RS02685 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD05_RS02685 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD05_RS02685 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS02690 PF05275 Copper resistance protein B precursor (CopB) RD05_RS02695 PF00394 Multicopper oxidase RD05_RS02695 PF07732 Multicopper oxidase RD05_RS02695 PF07731 Multicopper oxidase RD05_RS02725 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RD05_RS02725 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD05_RS02725 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD05_RS02730 PF02515 CoA-transferase family III RD05_RS02735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS02735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS02735 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS02750 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS02755 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS02760 PF01256 Carbohydrate kinase RD05_RS02780 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS02785 PF12911 N-terminal TM domain of oligopeptide transport permease C RD05_RS02785 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS02790 PF00005 ABC transporter RD05_RS02790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS02800 PF07687 Peptidase dimerisation domain RD05_RS02800 PF01546 Peptidase family M20/M25/M40 RD05_RS02810 PF00580 UvrD/REP helicase N-terminal domain RD05_RS02810 PF13361 UvrD-like helicase C-terminal domain RD05_RS02815 PF00271 Helicase conserved C-terminal domain RD05_RS02815 PF17764 3′ DNA-binding domain (3′BD) RD05_RS02815 PF18074 Primosomal protein N C-terminal domain RD05_RS02815 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RD05_RS02815 PF00270 DEAD/DEAH box helicase RD05_RS02820 PF01208 Uroporphyrinogen decarboxylase (URO-D) RD05_RS02830 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RD05_RS02835 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD05_RS02835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD05_RS02840 PF00231 ATP synthase RD05_RS02845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD05_RS02845 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD05_RS02845 PF00306 ATP synthase alpha/beta chain, C terminal domain RD05_RS02850 PF00213 ATP synthase delta (OSCP) subunit RD05_RS02855 PF00430 ATP synthase B/B' CF(0) RD05_RS02860 PF00137 ATP synthase subunit C RD05_RS02865 PF00119 ATP synthase A chain RD05_RS02890 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS02895 PF13180 PDZ domain RD05_RS02895 PF17820 PDZ domain RD05_RS02900 PF13192 Thioredoxin domain RD05_RS02900 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS02910 PF01171 PP-loop family RD05_RS02920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD05_RS02920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD05_RS02920 PF01842 ACT domain RD05_RS02925 PF10411 Disulfide bond isomerase protein N-terminus RD05_RS02925 PF13098 Thioredoxin-like domain RD05_RS02930 PF01494 FAD binding domain RD05_RS02935 PF03562 MltA specific insert domain RD05_RS02935 PF06725 3D domain RD05_RS02940 PF04379 ApaG domain RD05_RS02945 PF00834 Ribulose-phosphate 3 epimerase family RD05_RS02950 PF13419 Haloacid dehalogenase-like hydrolase RD05_RS02955 PF04715 Anthranilate synthase component I, N terminal region RD05_RS02955 PF00425 chorismate binding enzyme RD05_RS02960 PF00117 Glutamine amidotransferase class-I RD05_RS02965 PF02885 Glycosyl transferase family, helical bundle domain RD05_RS02965 PF00591 Glycosyl transferase family, a/b domain RD05_RS02970 PF00218 Indole-3-glycerol phosphate synthase RD05_RS02995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS02995 PF18158 Adaptive response protein AidB N-terminal domain RD05_RS02995 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS03000 PF03466 LysR substrate binding domain RD05_RS03005 PF00551 Formyl transferase RD05_RS03015 PF01613 Flavin reductase like domain RD05_RS03020 PF01243 Pyridoxamine 5'-phosphate oxidase RD05_RS03020 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RD05_RS03030 PF07690 Major Facilitator Superfamily RD05_RS03035 PF00899 ThiF family RD05_RS03040 PF07702 UTRA domain RD05_RS03040 PF00392 Bacterial regulatory proteins, gntR family RD05_RS03045 PF13193 AMP-binding enzyme C-terminal domain RD05_RS03045 PF00501 AMP-binding enzyme RD05_RS03050 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS03065 PF01063 Amino-transferase class IV RD05_RS03070 PF00425 chorismate binding enzyme RD05_RS03070 PF04715 Anthranilate synthase component I, N terminal region RD05_RS03075 PF17755 UvrA DNA-binding domain RD05_RS03075 PF17760 UvrA interaction domain RD05_RS03075 PF00005 ABC transporter RD05_RS03085 PF03466 LysR substrate binding domain RD05_RS03085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS03090 PF00535 Glycosyl transferase family 2 RD05_RS03095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS03100 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS03110 PF12848 ABC transporter RD05_RS03110 PF00005 ABC transporter RD05_RS03130 PF03776 Septum formation topological specificity factor MinE RD05_RS03135 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RD05_RS03140 PF03775 Septum formation inhibitor MinC, C-terminal domain RD05_RS03140 PF05209 Septum formation inhibitor MinC, N-terminal domain RD05_RS03145 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RD05_RS03145 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD05_RS03150 PF01654 Cytochrome bd terminal oxidase subunit I RD05_RS03160 PF13493 Domain of unknown function (DUF4118) RD05_RS03160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS03160 PF02702 Osmosensitive K+ channel His kinase sensor domain RD05_RS03165 PF00486 Transcriptional regulatory protein, C terminal RD05_RS03165 PF00072 Response regulator receiver domain RD05_RS03180 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS03185 PF04391 Protein of unknown function (DUF533) RD05_RS03205 PF01464 Transglycosylase SLT domain RD05_RS03205 PF01476 LysM domain RD05_RS03210 PF00753 Metallo-beta-lactamase superfamily RD05_RS03210 PF16123 Hydroxyacylglutathione hydrolase C-terminus RD05_RS03215 PF08241 Methyltransferase domain RD05_RS03220 PF00075 RNase H RD05_RS03265 PF01575 MaoC like domain RD05_RS03270 PF02803 Thiolase, C-terminal domain RD05_RS03270 PF00108 Thiolase, N-terminal domain RD05_RS03280 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS03285 PF00106 short chain dehydrogenase RD05_RS03295 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD05_RS03295 PF00005 ABC transporter RD05_RS03300 PF00005 ABC transporter RD05_RS03305 PF02653 Branched-chain amino acid transport system / permease component RD05_RS03315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS03315 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS03315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS03320 PF08361 MAATS-type transcriptional repressor, C-terminal region RD05_RS03320 PF00440 Bacterial regulatory proteins, tetR family RD05_RS03325 PF14535 AMP-binding enzyme C-terminal domain RD05_RS03325 PF00501 AMP-binding enzyme RD05_RS03330 PF02515 CoA-transferase family III RD05_RS03350 PF04285 Protein of unknown function (DUF444) RD05_RS03355 PF04293 SpoVR like protein RD05_RS03370 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS03375 PF05034 Methylaspartate ammonia-lyase N-terminus RD05_RS03375 PF07476 Methylaspartate ammonia-lyase C-terminus RD05_RS03380 PF00392 Bacterial regulatory proteins, gntR family RD05_RS03380 PF07702 UTRA domain RD05_RS03395 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS03400 PF00376 MerR family regulatory protein RD05_RS03400 PF09278 MerR, DNA binding RD05_RS03405 PF01774 UreD urease accessory protein RD05_RS03410 PF00547 Urease, gamma subunit RD05_RS03415 PF04955 HupE / UreJ protein RD05_RS03420 PF00699 Urease beta subunit RD05_RS03425 PF01979 Amidohydrolase family RD05_RS03425 PF00449 Urease alpha-subunit, N-terminal domain RD05_RS03430 PF05194 UreE urease accessory protein, C-terminal domain RD05_RS03430 PF02814 UreE urease accessory protein, N-terminal domain RD05_RS03435 PF01730 UreF RD05_RS03440 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD05_RS03450 PF07364 Metallopeptidase family M81 RD05_RS03450 PF07171 MlrC C-terminus RD05_RS03460 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS03465 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS03470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS03475 PF00171 Aldehyde dehydrogenase family RD05_RS03480 PF00202 Aminotransferase class-III RD05_RS03485 PF00155 Aminotransferase class I and II RD05_RS03485 PF00392 Bacterial regulatory proteins, gntR family RD05_RS03490 PF00186 Dihydrofolate reductase RD05_RS03495 PF00303 Thymidylate synthase RD05_RS03505 PF03232 Ubiquinone biosynthesis protein COQ7 RD05_RS03510 PF00953 Glycosyl transferase family 4 RD05_RS03515 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD05_RS03515 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD05_RS03515 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD05_RS03520 PF01370 NAD dependent epimerase/dehydratase family RD05_RS03525 PF03023 Lipid II flippase MurJ RD05_RS03530 PF13439 Glycosyltransferase Family 4 RD05_RS03530 PF00534 Glycosyl transferases group 1 RD05_RS03535 PF00733 Asparagine synthase RD05_RS03535 PF13537 Glutamine amidotransferase domain RD05_RS03540 PF13439 Glycosyltransferase Family 4 RD05_RS03540 PF00534 Glycosyl transferases group 1 RD05_RS03550 PF00534 Glycosyl transferases group 1 RD05_RS03550 PF13477 Glycosyl transferase 4-like RD05_RS03555 PF00342 Phosphoglucose isomerase RD05_RS03560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD05_RS03560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD05_RS03560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD05_RS03560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD05_RS03570 PF02913 FAD linked oxidases, C-terminal domain RD05_RS03570 PF01565 FAD binding domain RD05_RS03575 PF00072 Response regulator receiver domain RD05_RS03575 PF00486 Transcriptional regulatory protein, C terminal RD05_RS03580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS03580 PF08521 Two-component sensor kinase N-terminal RD05_RS03580 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS03585 PF00884 Sulfatase RD05_RS03595 PF04209 homogentisate 1,2-dioxygenase RD05_RS03600 PF03466 LysR substrate binding domain RD05_RS03600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS03610 PF01494 FAD binding domain RD05_RS03620 PF06827 Zinc finger found in FPG and IleRS RD05_RS03620 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RD05_RS03620 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RD05_RS03630 PF03550 Outer membrane lipoprotein LolB RD05_RS03635 PF08544 GHMP kinases C terminal RD05_RS03635 PF00288 GHMP kinases N terminal domain RD05_RS03645 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RD05_RS03645 PF14572 Phosphoribosyl synthetase-associated domain RD05_RS03650 PF14693 Ribosomal protein TL5, C-terminal domain RD05_RS03650 PF01386 Ribosomal L25p family RD05_RS03655 PF01195 Peptidyl-tRNA hydrolase RD05_RS03665 PF01926 50S ribosome-binding GTPase RD05_RS03665 PF06071 Protein of unknown function (DUF933) RD05_RS03670 PF13356 Arm DNA-binding domain RD05_RS03670 PF00589 Phage integrase family RD05_RS03685 PF01555 DNA methylase RD05_RS03690 PF13175 AAA ATPase domain RD05_RS03715 PF00580 UvrD/REP helicase N-terminal domain RD05_RS03715 PF13361 UvrD-like helicase C-terminal domain RD05_RS03730 PF12951 Passenger-associated-transport-repeat RD05_RS03740 PF00486 Transcriptional regulatory protein, C terminal RD05_RS03740 PF00072 Response regulator receiver domain RD05_RS03755 PF17938 Tetracyclin repressor-like, C-terminal domain RD05_RS03755 PF00440 Bacterial regulatory proteins, tetR family RD05_RS03780 PF01266 FAD dependent oxidoreductase RD05_RS03795 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS03805 PF01810 LysE type translocator RD05_RS03850 PF00561 alpha/beta hydrolase fold RD05_RS03860 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS03865 PF00005 ABC transporter RD05_RS03865 PF03459 TOBE domain RD05_RS03870 PF13091 PLD-like domain RD05_RS03880 PF03167 Uracil DNA glycosylase superfamily RD05_RS03885 PF00271 Helicase conserved C-terminal domain RD05_RS03885 PF00270 DEAD/DEAH box helicase RD05_RS03895 PF01743 Poly A polymerase head domain RD05_RS03895 PF12627 Probable RNA and SrmB- binding site of polymerase A RD05_RS03900 PF14718 Soluble lytic murein transglycosylase L domain RD05_RS03900 PF01464 Transglycosylase SLT domain RD05_RS03910 PF00083 Sugar (and other) transporter RD05_RS03910 PF07690 Major Facilitator Superfamily RD05_RS03915 PF00850 Histone deacetylase domain RD05_RS03920 PF03466 LysR substrate binding domain RD05_RS03920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS03930 PF02219 Methylenetetrahydrofolate reductase RD05_RS03935 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RD05_RS03940 PF05221 S-adenosyl-L-homocysteine hydrolase RD05_RS03940 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RD05_RS03945 PF00534 Glycosyl transferases group 1 RD05_RS03945 PF13439 Glycosyltransferase Family 4 RD05_RS03955 PF02773 S-adenosylmethionine synthetase, C-terminal domain RD05_RS03955 PF02772 S-adenosylmethionine synthetase, central domain RD05_RS03955 PF00438 S-adenosylmethionine synthetase, N-terminal domain RD05_RS03965 PF03279 Bacterial lipid A biosynthesis acyltransferase RD05_RS03970 PF01678 Diaminopimelate epimerase RD05_RS03980 PF00589 Phage integrase family RD05_RS03980 PF02899 Phage integrase, N-terminal SAM-like domain RD05_RS03985 PF07715 TonB-dependent Receptor Plug Domain RD05_RS03985 PF00593 TonB dependent receptor RD05_RS03990 PF03824 High-affinity nickel-transport protein RD05_RS04000 PF01297 Zinc-uptake complex component A periplasmic RD05_RS04005 PF00950 ABC 3 transport family RD05_RS04010 PF00005 ABC transporter RD05_RS04020 PF01475 Ferric uptake regulator family RD05_RS04025 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD05_RS04025 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD05_RS04030 PF01258 Prokaryotic dksA/traR C4-type zinc finger RD05_RS04035 PF00227 Proteasome subunit RD05_RS04040 PF07724 AAA domain (Cdc48 subfamily) RD05_RS04040 PF00004 ATPase family associated with various cellular activities (AAA) RD05_RS04040 PF10431 C-terminal, D2-small domain, of ClpB protein RD05_RS04050 PF01923 Cobalamin adenosyltransferase RD05_RS04065 PF02525 Flavodoxin-like fold RD05_RS04070 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD05_RS04070 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD05_RS04080 PF01970 Tripartite tricarboxylate transporter TctA family RD05_RS04125 PF01790 Prolipoprotein diacylglyceryl transferase RD05_RS04130 PF00920 Dehydratase family RD05_RS04135 PF00034 Cytochrome c RD05_RS04140 PF01625 Peptide methionine sulfoxide reductase RD05_RS04145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD05_RS04150 PF01037 Lrp/AsnC ligand binding domain RD05_RS04190 PF07687 Peptidase dimerisation domain RD05_RS04190 PF01546 Peptidase family M20/M25/M40 RD05_RS04195 PF01979 Amidohydrolase family RD05_RS04200 PF12848 ABC transporter RD05_RS04200 PF00005 ABC transporter RD05_RS04200 PF16326 ABC transporter C-terminal domain RD05_RS04210 PF02381 MraZ protein, putative antitoxin-like RD05_RS04215 PF01795 MraW methylase family RD05_RS04220 PF04999 Cell division protein FtsL RD05_RS04225 PF03717 Penicillin-binding Protein dimerisation domain RD05_RS04225 PF00905 Penicillin binding protein transpeptidase domain RD05_RS04230 PF08245 Mur ligase middle domain RD05_RS04230 PF02875 Mur ligase family, glutamate ligase domain RD05_RS04235 PF00953 Glycosyl transferase family 4 RD05_RS04240 PF08245 Mur ligase middle domain RD05_RS04240 PF02875 Mur ligase family, glutamate ligase domain RD05_RS04245 PF01098 Cell cycle protein RD05_RS04250 PF03033 Glycosyltransferase family 28 N-terminal domain RD05_RS04250 PF04101 Glycosyltransferase family 28 C-terminal domain RD05_RS04255 PF01225 Mur ligase family, catalytic domain RD05_RS04255 PF02875 Mur ligase family, glutamate ligase domain RD05_RS04255 PF08245 Mur ligase middle domain RD05_RS04260 PF07478 D-ala D-ala ligase C-terminus RD05_RS04260 PF01820 D-ala D-ala ligase N-terminus RD05_RS04265 PF08478 POTRA domain, FtsQ-type RD05_RS04265 PF03799 Cell division protein FtsQ RD05_RS04270 PF02491 SHS2 domain inserted in FTSA RD05_RS04275 PF00091 Tubulin/FtsZ family, GTPase domain RD05_RS04275 PF12327 FtsZ family, C-terminal domain RD05_RS04280 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RD05_RS04290 PF08525 Opacity-associated protein A N-terminal motif RD05_RS04290 PF01551 Peptidase family M23 RD05_RS04290 PF01476 LysM domain RD05_RS04295 PF07517 SecA DEAD-like domain RD05_RS04295 PF07516 SecA Wing and Scaffold domain RD05_RS04295 PF01043 SecA preprotein cross-linking domain RD05_RS04295 PF02810 SEC-C motif RD05_RS04305 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS04315 PF00106 short chain dehydrogenase RD05_RS04320 PF01266 FAD dependent oxidoreductase RD05_RS04325 PF01037 Lrp/AsnC ligand binding domain RD05_RS04335 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RD05_RS04345 PF08501 Shikimate dehydrogenase substrate binding domain RD05_RS04345 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RD05_RS04345 PF01488 Shikimate / quinate 5-dehydrogenase RD05_RS04355 PF00773 RNB domain RD05_RS04360 PF05728 Uncharacterised protein family (UPF0227) RD05_RS04365 PF01225 Mur ligase family, catalytic domain RD05_RS04365 PF02875 Mur ligase family, glutamate ligase domain RD05_RS04365 PF08245 Mur ligase middle domain RD05_RS04370 PF08534 Redoxin RD05_RS04375 PF01220 Dehydroquinase class II RD05_RS04380 PF00364 Biotin-requiring enzyme RD05_RS04385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD05_RS04385 PF00289 Biotin carboxylase, N-terminal domain RD05_RS04385 PF02785 Biotin carboxylase C-terminal domain RD05_RS04400 PF00294 pfkB family carbohydrate kinase RD05_RS04425 PF03062 MBOAT, membrane-bound O-acyltransferase family RD05_RS04430 PF13193 AMP-binding enzyme C-terminal domain RD05_RS04430 PF00501 AMP-binding enzyme RD05_RS04445 PF00268 Ribonucleotide reductase, small chain RD05_RS04450 PF03477 ATP cone domain RD05_RS04450 PF00317 Ribonucleotide reductase, all-alpha domain RD05_RS04450 PF02867 Ribonucleotide reductase, barrel domain RD05_RS04465 PF01037 Lrp/AsnC ligand binding domain RD05_RS04480 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD05_RS04485 PF13380 CoA binding domain RD05_RS04485 PF00583 Acetyltransferase (GNAT) family RD05_RS04485 PF13607 Succinyl-CoA ligase like flavodoxin domain RD05_RS04495 PF00392 Bacterial regulatory proteins, gntR family RD05_RS04495 PF07729 FCD domain RD05_RS04505 PF00271 Helicase conserved C-terminal domain RD05_RS04505 PF00270 DEAD/DEAH box helicase RD05_RS04505 PF03880 DbpA RNA binding domain RD05_RS04510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD05_RS04515 PF00857 Isochorismatase family RD05_RS04520 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS04525 PF00005 ABC transporter RD05_RS04535 PF02230 Phospholipase/Carboxylesterase RD05_RS04540 PF04751 Protein of unknown function (DUF615) RD05_RS04545 PF01523 Putative modulator of DNA gyrase RD05_RS04550 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS04555 PF00572 Ribosomal protein L13 RD05_RS04560 PF00380 Ribosomal protein S9/S16 RD05_RS04565 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD05_RS04565 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD05_RS04575 PF01521 Iron-sulphur cluster biosynthesis RD05_RS04580 PF03702 Anhydro-N-acetylmuramic acid kinase RD05_RS04585 PF08460 Bacterial SH3 domain RD05_RS04585 PF01551 Peptidase family M23 RD05_RS04595 PF01479 S4 domain RD05_RS04595 PF00579 tRNA synthetases class I (W and Y) RD05_RS04605 PF00464 Serine hydroxymethyltransferase RD05_RS04610 PF03477 ATP cone domain RD05_RS04625 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD05_RS04625 PF01872 RibD C-terminal domain RD05_RS04640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS04640 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS04640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS04640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS04640 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS04640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS04650 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS04655 PF03466 LysR substrate binding domain RD05_RS04655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS04660 PF02515 CoA-transferase family III RD05_RS04680 PF02678 Pirin RD05_RS04680 PF05726 Pirin C-terminal cupin domain RD05_RS04695 PF00072 Response regulator receiver domain RD05_RS04700 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD05_RS04700 PF06481 COX Aromatic Rich Motif RD05_RS04705 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD05_RS04710 PF00510 Cytochrome c oxidase subunit III RD05_RS04715 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD05_RS04720 PF01022 Bacterial regulatory protein, arsR family RD05_RS04740 PF05114 Protein of unknown function (DUF692) RD05_RS04755 PF07715 TonB-dependent Receptor Plug Domain RD05_RS04755 PF00593 TonB dependent receptor RD05_RS04770 PF01551 Peptidase family M23 RD05_RS04770 PF01476 LysM domain RD05_RS04785 PF04461 Protein of unknown function (DUF520) RD05_RS04795 PF08281 Sigma-70, region 4 RD05_RS04795 PF04542 Sigma-70 region 2 RD05_RS04815 PF00795 Carbon-nitrogen hydrolase RD05_RS04820 PF01523 Putative modulator of DNA gyrase RD05_RS04825 PF00793 DAHP synthetase I family RD05_RS04830 PF13018 Extended Signal Peptide of Type V secretion system RD05_RS04830 PF05594 Haemagluttinin repeat RD05_RS04830 PF13332 Hemagglutinin repeat RD05_RS04830 PF05860 haemagglutination activity domain RD05_RS04830 PF13018 Extended Signal Peptide of Type V secretion system RD05_RS04830 PF05594 Haemagluttinin repeat RD05_RS04830 PF13332 Hemagglutinin repeat RD05_RS04830 PF05860 haemagglutination activity domain RD05_RS04835 PF02913 FAD linked oxidases, C-terminal domain RD05_RS04835 PF01565 FAD binding domain RD05_RS04840 PF01565 FAD binding domain RD05_RS04840 PF02913 FAD linked oxidases, C-terminal domain RD05_RS04845 PF01565 FAD binding domain RD05_RS04850 PF13183 4Fe-4S dicluster domain RD05_RS04850 PF02754 Cysteine-rich domain RD05_RS04855 PF00756 Putative esterase RD05_RS04860 PF07715 TonB-dependent Receptor Plug Domain RD05_RS04860 PF00593 TonB dependent receptor RD05_RS04870 PF02233 NAD(P) transhydrogenase beta subunit RD05_RS04875 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RD05_RS04875 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RD05_RS04885 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS04890 PF03466 LysR substrate binding domain RD05_RS04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS04900 PF01925 Sulfite exporter TauE/SafE RD05_RS04905 PF13417 Glutathione S-transferase, N-terminal domain RD05_RS04905 PF00043 Glutathione S-transferase, C-terminal domain RD05_RS04910 PF00206 Lyase RD05_RS04910 PF08328 Adenylosuccinate lyase C-terminal RD05_RS04915 PF01322 Cytochrome C' RD05_RS04935 PF01594 AI-2E family transporter RD05_RS04945 PF00392 Bacterial regulatory proteins, gntR family RD05_RS04945 PF07729 FCD domain RD05_RS04955 PF01425 Amidase RD05_RS04960 PF02515 CoA-transferase family III RD05_RS04965 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS04980 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS04985 PF00005 ABC transporter RD05_RS05000 PF09339 IclR helix-turn-helix domain RD05_RS05000 PF01614 Bacterial transcriptional regulator RD05_RS05010 PF00501 AMP-binding enzyme RD05_RS05010 PF13193 AMP-binding enzyme C-terminal domain RD05_RS05015 PF01042 Endoribonuclease L-PSP RD05_RS05020 PF02653 Branched-chain amino acid transport system / permease component RD05_RS05035 PF00005 ABC transporter RD05_RS05040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD05_RS05055 PF03466 LysR substrate binding domain RD05_RS05055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS05065 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD05_RS05070 PF07690 Major Facilitator Superfamily RD05_RS05075 PF03466 LysR substrate binding domain RD05_RS05075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS05090 PF01425 Amidase RD05_RS05095 PF00677 Lumazine binding domain RD05_RS05100 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS05105 PF01037 Lrp/AsnC ligand binding domain RD05_RS05105 PF13404 AsnC-type helix-turn-helix domain RD05_RS05115 PF13193 AMP-binding enzyme C-terminal domain RD05_RS05115 PF00501 AMP-binding enzyme RD05_RS05125 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS05130 PF00005 ABC transporter RD05_RS05145 PF08240 Alcohol dehydrogenase GroES-like domain RD05_RS05145 PF00107 Zinc-binding dehydrogenase RD05_RS05165 PF00403 Heavy-metal-associated domain RD05_RS05170 PF01966 HD domain RD05_RS05175 PF00155 Aminotransferase class I and II RD05_RS05180 PF03466 LysR substrate binding domain RD05_RS05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS05190 PF00083 Sugar (and other) transporter RD05_RS05210 PF13609 Gram-negative porin RD05_RS05215 PF02548 Ketopantoate hydroxymethyltransferase RD05_RS05220 PF03466 LysR substrate binding domain RD05_RS05220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS05265 PF00440 Bacterial regulatory proteins, tetR family RD05_RS05275 PF05170 AsmA family RD05_RS05280 PF03352 Methyladenine glycosylase RD05_RS05285 PF09278 MerR, DNA binding RD05_RS05285 PF00376 MerR family regulatory protein RD05_RS05300 PF01547 Bacterial extracellular solute-binding protein RD05_RS05310 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS05310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD05_RS05315 PF00005 ABC transporter RD05_RS05315 PF08402 TOBE domain RD05_RS05320 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS05325 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS05325 PF14785 Maltose transport system permease protein MalF P2 domain RD05_RS05345 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS05350 PF00392 Bacterial regulatory proteins, gntR family RD05_RS05350 PF07729 FCD domain RD05_RS05375 PF00465 Iron-containing alcohol dehydrogenase RD05_RS05390 PF03180 NLPA lipoprotein RD05_RS05395 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS05400 PF00005 ABC transporter RD05_RS05400 PF09383 NIL domain RD05_RS05405 PF13802 Galactose mutarotase-like RD05_RS05405 PF01055 Glycosyl hydrolases family 31 RD05_RS05415 PF00459 Inositol monophosphatase family RD05_RS05425 PF13193 AMP-binding enzyme C-terminal domain RD05_RS05425 PF00501 AMP-binding enzyme RD05_RS05430 PF01546 Peptidase family M20/M25/M40 RD05_RS05430 PF07687 Peptidase dimerisation domain RD05_RS05435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS05435 PF03466 LysR substrate binding domain RD05_RS05440 PF03601 Conserved hypothetical protein 698 RD05_RS05445 PF03061 Thioesterase superfamily RD05_RS05450 PF01769 Divalent cation transporter RD05_RS05450 PF00571 CBS domain RD05_RS05450 PF03448 MgtE intracellular N domain RD05_RS05470 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS05480 PF02609 Exonuclease VII small subunit RD05_RS05485 PF00348 Polyprenyl synthetase RD05_RS05490 PF02779 Transketolase, pyrimidine binding domain RD05_RS05490 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RD05_RS05490 PF02780 Transketolase, C-terminal domain RD05_RS05495 PF02649 Type I GTP cyclohydrolase folE2 RD05_RS05500 PF01250 Ribosomal protein S6 RD05_RS05510 PF01084 Ribosomal protein S18 RD05_RS05515 PF01281 Ribosomal protein L9, N-terminal domain RD05_RS05515 PF03948 Ribosomal protein L9, C-terminal domain RD05_RS05525 PF00772 DnaB-like helicase N terminal domain RD05_RS05525 PF03796 DnaB-like helicase C terminal domain RD05_RS05530 PF13593 SBF-like CPA transporter family (DUF4137) RD05_RS05535 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD05_RS05540 PF13638 PIN domain RD05_RS05540 PF02562 PhoH-like protein RD05_RS05545 PF00578 AhpC/TSA family RD05_RS05550 PF04430 Protein of unknown function (DUF498/DUF598) RD05_RS05555 PF00155 Aminotransferase class I and II RD05_RS05560 PF00742 Homoserine dehydrogenase RD05_RS05560 PF01842 ACT domain RD05_RS05560 PF03447 Homoserine dehydrogenase, NAD binding domain RD05_RS05565 PF00291 Pyridoxal-phosphate dependent enzyme RD05_RS05565 PF14821 Threonine synthase N terminus RD05_RS05580 PF02615 Malate/L-lactate dehydrogenase RD05_RS05590 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS05605 PF03328 HpcH/HpaI aldolase/citrate lyase family RD05_RS05610 PF01649 Ribosomal protein S20 RD05_RS05620 PF03023 Lipid II flippase MurJ RD05_RS05625 PF00106 short chain dehydrogenase RD05_RS05630 PF05191 Adenylate kinase, active site lid RD05_RS05635 PF02348 Cytidylyltransferase RD05_RS05640 PF03966 Trm112p-like protein RD05_RS05645 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RD05_RS05650 PF02472 Biopolymer transport protein ExbD/TolR RD05_RS05655 PF01618 MotA/TolQ/ExbB proton channel family RD05_RS05665 PF02601 Exonuclease VII, large subunit RD05_RS05665 PF13742 OB-fold nucleic acid binding domain RD05_RS05670 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD05_RS05670 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD05_RS05675 PF00654 Voltage gated chloride channel RD05_RS05680 PF02803 Thiolase, C-terminal domain RD05_RS05680 PF00108 Thiolase, N-terminal domain RD05_RS05690 PF00313 'Cold-shock' DNA-binding domain RD05_RS05695 PF02617 ATP-dependent Clp protease adaptor protein ClpS RD05_RS05700 PF17962 Bacterial macroglobulin domain 6 RD05_RS05700 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RD05_RS05700 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RD05_RS05700 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RD05_RS05700 PF00207 Alpha-2-macroglobulin family RD05_RS05700 PF01835 MG2 domain RD05_RS05700 PF07703 Alpha-2-macroglobulin bait region domain RD05_RS05700 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RD05_RS05705 PF06832 Penicillin-Binding Protein C-terminus Family RD05_RS05705 PF00905 Penicillin binding protein transpeptidase domain RD05_RS05705 PF00912 Transglycosylase RD05_RS05710 PF10431 C-terminal, D2-small domain, of ClpB protein RD05_RS05710 PF17871 AAA lid domain RD05_RS05710 PF07724 AAA domain (Cdc48 subfamily) RD05_RS05710 PF00004 ATPase family associated with various cellular activities (AAA) RD05_RS05710 PF02861 Clp amino terminal domain, pathogenicity island component RD05_RS05715 PF04403 Paraquat-inducible protein A RD05_RS05720 PF02470 MlaD protein RD05_RS05730 PF00171 Aldehyde dehydrogenase family RD05_RS05730 PF14850 DNA-binding domain of Proline dehydrogenase RD05_RS05730 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RD05_RS05730 PF01619 Proline dehydrogenase RD05_RS05740 PF13458 Periplasmic binding protein RD05_RS05745 PF02653 Branched-chain amino acid transport system / permease component RD05_RS05750 PF02653 Branched-chain amino acid transport system / permease component RD05_RS05750 PF11862 Domain of unknown function (DUF3382) RD05_RS05755 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD05_RS05755 PF00005 ABC transporter RD05_RS05760 PF00005 ABC transporter RD05_RS05765 PF07690 Major Facilitator Superfamily RD05_RS05770 PF00440 Bacterial regulatory proteins, tetR family RD05_RS05780 PF03797 Autotransporter beta-domain RD05_RS05780 PF03212 Pertactin RD05_RS05790 PF00543 Nitrogen regulatory protein P-II RD05_RS05795 PF04380 Membrane fusogenic activity RD05_RS05810 PF07690 Major Facilitator Superfamily RD05_RS05810 PF00083 Sugar (and other) transporter RD05_RS05820 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD05_RS05825 PF00510 Cytochrome c oxidase subunit III RD05_RS05830 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD05_RS05835 PF02104 SURF1 family RD05_RS05860 PF13411 MerR HTH family regulatory protein RD05_RS05865 PF00403 Heavy-metal-associated domain RD05_RS05885 PF04055 Radical SAM superfamily RD05_RS05885 PF06968 Biotin and Thiamin Synthesis associated domain RD05_RS05900 PF08534 Redoxin RD05_RS05910 PF01738 Dienelactone hydrolase family RD05_RS05920 PF01967 MoaC family RD05_RS05930 PF02391 MoaE protein RD05_RS05935 PF00994 Probable molybdopterin binding domain RD05_RS05940 PF00994 Probable molybdopterin binding domain RD05_RS05940 PF03453 MoeA N-terminal region (domain I and II) RD05_RS05940 PF03454 MoeA C-terminal region (domain IV) RD05_RS05945 PF04055 Radical SAM superfamily RD05_RS05945 PF06463 Molybdenum Cofactor Synthesis C RD05_RS05965 PF00206 Lyase RD05_RS05965 PF14698 Argininosuccinate lyase C-terminal RD05_RS05970 PF00924 Mechanosensitive ion channel RD05_RS05975 PF02540 NAD synthase RD05_RS05975 PF00795 Carbon-nitrogen hydrolase RD05_RS05980 PF00543 Nitrogen regulatory protein P-II RD05_RS06005 PF03466 LysR substrate binding domain RD05_RS06005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS06015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS06020 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS06025 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS06025 PF12911 N-terminal TM domain of oligopeptide transport permease C RD05_RS06030 PF03193 RsgA GTPase RD05_RS06035 PF01435 Peptidase family M48 RD05_RS06040 PF00929 Exonuclease RD05_RS06045 PF03853 YjeF-related protein N-terminus RD05_RS06050 PF07848 PaaX-like protein RD05_RS06050 PF08223 PaaX-like protein C-terminal domain RD05_RS06055 PF05138 Phenylacetic acid catabolic protein RD05_RS06060 PF06243 Phenylacetic acid degradation B RD05_RS06065 PF05138 Phenylacetic acid catabolic protein RD05_RS06070 PF01883 Iron-sulfur cluster assembly protein RD05_RS06075 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS06075 PF00175 Oxidoreductase NAD-binding domain RD05_RS06075 PF00970 Oxidoreductase FAD-binding domain RD05_RS06085 PF00171 Aldehyde dehydrogenase family RD05_RS06090 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS06095 PF03061 Thioesterase superfamily RD05_RS06100 PF00501 AMP-binding enzyme RD05_RS06100 PF14535 AMP-binding enzyme C-terminal domain RD05_RS06105 PF16970 Type-1 fimbrial protein, A RD05_RS06120 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS06125 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD05_RS06125 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD05_RS06130 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD05_RS06135 PF02769 AIR synthase related protein, C-terminal domain RD05_RS06135 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RD05_RS06135 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RD05_RS06140 PF05594 Haemagluttinin repeat RD05_RS06140 PF13332 Hemagglutinin repeat RD05_RS06140 PF13018 Extended Signal Peptide of Type V secretion system RD05_RS06140 PF05860 haemagglutination activity domain RD05_RS06165 PF00596 Class II Aldolase and Adducin N-terminal domain RD05_RS06170 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS06175 PF01242 6-pyruvoyl tetrahydropterin synthase RD05_RS06185 PF00472 RF-1 domain RD05_RS06205 PF00701 Dihydrodipicolinate synthetase family RD05_RS06210 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS06235 PF14537 Cytochrome c3 RD05_RS06235 PF00890 FAD binding domain RD05_RS06240 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS06255 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RD05_RS06255 PF01266 FAD dependent oxidoreductase RD05_RS06260 PF08220 DeoR-like helix-turn-helix domain RD05_RS06260 PF00455 DeoR C terminal sensor domain RD05_RS06265 PF17912 MalK OB fold domain RD05_RS06265 PF00005 ABC transporter RD05_RS06270 PF17912 MalK OB fold domain RD05_RS06270 PF00005 ABC transporter RD05_RS06280 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS06305 PF01037 Lrp/AsnC ligand binding domain RD05_RS06310 PF01266 FAD dependent oxidoreductase RD05_RS06315 PF12320 Type 5 capsule protein repressor C-terminal domain RD05_RS06315 PF00149 Calcineurin-like phosphoesterase RD05_RS06340 PF00196 Bacterial regulatory proteins, luxR family RD05_RS06340 PF00072 Response regulator receiver domain RD05_RS06360 PF00571 CBS domain RD05_RS06360 PF00478 IMP dehydrogenase / GMP reductase domain RD05_RS06365 PF02540 NAD synthase RD05_RS06365 PF00958 GMP synthase C terminal domain RD05_RS06365 PF00117 Glutamine amidotransferase class-I RD05_RS06375 PF13657 HipA N-terminal domain RD05_RS06375 PF07804 HipA-like C-terminal domain RD05_RS06385 PF07690 Major Facilitator Superfamily RD05_RS06400 PF01979 Amidohydrolase family RD05_RS06410 PF00005 ABC transporter RD05_RS06415 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS06440 PF01965 DJ-1/PfpI family RD05_RS06445 PF00916 Sulfate permease family RD05_RS06445 PF01740 STAS domain RD05_RS06450 PF00753 Metallo-beta-lactamase superfamily RD05_RS06450 PF10996 Beta-Casp domain RD05_RS06450 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RD05_RS06465 PF12706 Beta-lactamase superfamily domain RD05_RS06470 PF12833 Helix-turn-helix domain RD05_RS06470 PF01965 DJ-1/PfpI family RD05_RS06475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS06475 PF03466 LysR substrate binding domain RD05_RS06490 PF08240 Alcohol dehydrogenase GroES-like domain RD05_RS06490 PF00107 Zinc-binding dehydrogenase RD05_RS06495 PF07690 Major Facilitator Superfamily RD05_RS06500 PF00155 Aminotransferase class I and II RD05_RS06500 PF00392 Bacterial regulatory proteins, gntR family RD05_RS06510 PF01810 LysE type translocator RD05_RS06520 PF07687 Peptidase dimerisation domain RD05_RS06520 PF01546 Peptidase family M20/M25/M40 RD05_RS06525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS06530 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS06535 PF12911 N-terminal TM domain of oligopeptide transport permease C RD05_RS06535 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS06540 PF00005 ABC transporter RD05_RS06540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS06545 PF00356 Bacterial regulatory proteins, lacI family RD05_RS06570 PF09335 SNARE associated Golgi protein RD05_RS06580 PF13847 Methyltransferase domain RD05_RS06595 PF00392 Bacterial regulatory proteins, gntR family RD05_RS06595 PF00155 Aminotransferase class I and II RD05_RS06605 PF00692 dUTPase RD05_RS06615 PF01632 Ribosomal protein L35 RD05_RS06620 PF00453 Ribosomal protein L20 RD05_RS06625 PF01409 tRNA synthetases class II core domain (F) RD05_RS06625 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RD05_RS06630 PF03484 tRNA synthetase B5 domain RD05_RS06630 PF03483 B3/4 domain RD05_RS06630 PF01588 Putative tRNA binding domain RD05_RS06630 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RD05_RS06630 PF03147 Ferredoxin-fold anticodon binding domain RD05_RS06635 PF00216 Bacterial DNA-binding protein RD05_RS06685 PF04231 Endonuclease I RD05_RS06705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD05_RS06705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD05_RS06710 PF04381 Putative exonuclease, RdgC RD05_RS06720 PF02515 CoA-transferase family III RD05_RS06725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS06725 PF03466 LysR substrate binding domain RD05_RS06745 PF00106 short chain dehydrogenase RD05_RS06755 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS06760 PF08402 TOBE domain RD05_RS06760 PF00005 ABC transporter RD05_RS06765 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS06765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD05_RS06765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD05_RS06770 PF08946 Osmosensory transporter coiled coil RD05_RS06770 PF00083 Sugar (and other) transporter RD05_RS06775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS06775 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS06780 PF00072 Response regulator receiver domain RD05_RS06780 PF00486 Transcriptional regulatory protein, C terminal RD05_RS06785 PF00154 recA bacterial DNA recombination protein RD05_RS06790 PF02631 RecX family RD05_RS06795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS06795 PF03466 LysR substrate binding domain RD05_RS06800 PF01717 Cobalamin-independent synthase, Catalytic domain RD05_RS06800 PF08267 Cobalamin-independent synthase, N-terminal domain RD05_RS06810 PF00549 CoA-ligase RD05_RS06810 PF08442 ATP-grasp domain RD05_RS06815 PF00549 CoA-ligase RD05_RS06815 PF02629 CoA binding domain RD05_RS06820 PF03741 Integral membrane protein TerC family RD05_RS06825 PF03741 Integral membrane protein TerC family RD05_RS06830 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RD05_RS06830 PF03900 Porphobilinogen deaminase, C-terminal domain RD05_RS06850 PF00719 Inorganic pyrophosphatase RD05_RS06855 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD05_RS06890 PF00263 Bacterial type II and III secretion system protein RD05_RS06890 PF13629 Pilus formation protein N terminal region RD05_RS06890 PF04972 BON domain RD05_RS06895 PF00437 Type II/IV secretion system protein RD05_RS06915 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS06920 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD05_RS06920 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD05_RS06925 PF02615 Malate/L-lactate dehydrogenase RD05_RS06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS06930 PF03466 LysR substrate binding domain RD05_RS06940 PF01266 FAD dependent oxidoreductase RD05_RS06945 PF04267 Sarcosine oxidase, delta subunit family RD05_RS06950 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS06950 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD05_RS06950 PF01571 Aminomethyltransferase folate-binding domain RD05_RS06950 PF17806 Sarcosine oxidase A3 domain RD05_RS06960 PF00551 Formyl transferase RD05_RS06965 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS06975 PF00561 alpha/beta hydrolase fold RD05_RS06985 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RD05_RS06985 PF01565 FAD binding domain RD05_RS06990 PF01113 Dihydrodipicolinate reductase, N-terminus RD05_RS06990 PF05173 Dihydrodipicolinate reductase, C-terminus RD05_RS06995 PF04355 SmpA / OmlA family RD05_RS07000 PF01475 Ferric uptake regulator family RD05_RS07005 PF02463 RecF/RecN/SMC N terminal domain RD05_RS07010 PF01513 ATP-NAD kinase RD05_RS07015 PF01628 HrcA protein C terminal domain RD05_RS07015 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RD05_RS07020 PF00762 Ferrochelatase RD05_RS07030 PF01025 GrpE RD05_RS07040 PF00012 Hsp70 protein RD05_RS07045 PF01556 DnaJ C terminal domain RD05_RS07045 PF00226 DnaJ domain RD05_RS07045 PF00684 DnaJ central domain RD05_RS07050 PF00675 Insulinase (Peptidase family M16) RD05_RS07050 PF05193 Peptidase M16 inactive domain RD05_RS07070 PF00004 ATPase family associated with various cellular activities (AAA) RD05_RS07070 PF17862 AAA+ lid domain RD05_RS07070 PF01434 Peptidase family M41 RD05_RS07080 PF00034 Cytochrome c RD05_RS07095 PF00180 Isocitrate/isopropylmalate dehydrogenase RD05_RS07115 PF00072 Response regulator receiver domain RD05_RS07115 PF00486 Transcriptional regulatory protein, C terminal RD05_RS07120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS07120 PF13492 GAF domain RD05_RS07120 PF13493 Domain of unknown function (DUF4118) RD05_RS07120 PF02702 Osmosensitive K+ channel His kinase sensor domain RD05_RS07120 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS07125 PF02669 K+-transporting ATPase, c chain RD05_RS07135 PF03814 Potassium-transporting ATPase A subunit RD05_RS07145 PF00474 Sodium:solute symporter family RD05_RS07160 PF00893 Small Multidrug Resistance protein RD05_RS07165 PF00488 MutS domain V RD05_RS07165 PF01713 Smr domain RD05_RS07170 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS07175 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RD05_RS07175 PF01580 FtsK/SpoIIIE family RD05_RS07175 PF17854 FtsK alpha domain RD05_RS07175 PF09397 Ftsk gamma domain RD05_RS07180 PF03548 Outer membrane lipoprotein carrier protein LolA RD05_RS07185 PF12002 MgsA AAA+ ATPase C terminal RD05_RS07185 PF16193 AAA C-terminal domain RD05_RS07185 PF00004 ATPase family associated with various cellular activities (AAA) RD05_RS07190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD05_RS07190 PF02403 Seryl-tRNA synthetase N-terminal domain RD05_RS07215 PF00990 Diguanylate cyclase, GGDEF domain RD05_RS07215 PF17151 Periplasmic sensor domain RD05_RS07230 PF00593 TonB dependent receptor RD05_RS07230 PF07660 Secretin and TonB N terminus short domain RD05_RS07230 PF07715 TonB-dependent Receptor Plug Domain RD05_RS07235 PF07690 Major Facilitator Superfamily RD05_RS07255 PF06276 Ferric iron reductase FhuF-like transporter RD05_RS07255 PF04183 IucA / IucC family RD05_RS07265 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RD05_RS07275 PF00999 Sodium/hydrogen exchanger family RD05_RS07275 PF02254 TrkA-N domain RD05_RS07280 PF00106 short chain dehydrogenase RD05_RS07290 PF03883 Peroxide stress protein YaaA RD05_RS07300 PF12805 FUSC-like inner membrane protein yccS RD05_RS07310 PF00990 Diguanylate cyclase, GGDEF domain RD05_RS07320 PF06969 HemN C-terminal domain RD05_RS07320 PF04055 Radical SAM superfamily RD05_RS07330 PF00196 Bacterial regulatory proteins, luxR family RD05_RS07335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD05_RS07335 PF02824 TGS domain RD05_RS07335 PF03129 Anticodon binding domain RD05_RS07335 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD05_RS07340 PF00707 Translation initiation factor IF-3, C-terminal domain RD05_RS07340 PF05198 Translation initiation factor IF-3, N-terminal domain RD05_RS07345 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RD05_RS07345 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RD05_RS07355 PF00381 PTS HPr component phosphorylation site RD05_RS07360 PF05524 PEP-utilising enzyme, N-terminal RD05_RS07360 PF00391 PEP-utilising enzyme, mobile domain RD05_RS07360 PF02896 PEP-utilising enzyme, TIM barrel domain RD05_RS07370 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD05_RS07380 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS07385 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS07390 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS07395 PF00005 ABC transporter RD05_RS07410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD05_RS07410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD05_RS07420 PF02293 AmiS/UreI family transporter RD05_RS07425 PF03069 Acetamidase/Formamidase family RD05_RS07440 PF01116 Fructose-bisphosphate aldolase class-II RD05_RS07450 PF01259 SAICAR synthetase RD05_RS07455 PF15723 Motility quorum-sensing regulator, toxin of MqsA RD05_RS07460 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD05_RS07465 PF02600 Disulfide bond formation protein DsbB RD05_RS07470 PF00731 AIR carboxylase RD05_RS07475 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RD05_RS07475 PF02222 ATP-grasp domain RD05_RS07480 PF03481 Putative GTP-binding controlling metal-binding RD05_RS07480 PF01300 Telomere recombination RD05_RS07485 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS07490 PF01614 Bacterial transcriptional regulator RD05_RS07490 PF09339 IclR helix-turn-helix domain RD05_RS07495 PF00491 Arginase family RD05_RS07500 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS07505 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS07510 PF00005 ABC transporter RD05_RS07515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD05_RS07515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD05_RS07525 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS07525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS07525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS07530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD05_RS07530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD05_RS07530 PF00205 Thiamine pyrophosphate enzyme, central domain RD05_RS07535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS07535 PF03466 LysR substrate binding domain RD05_RS07540 PF02899 Phage integrase, N-terminal SAM-like domain RD05_RS07540 PF00589 Phage integrase family RD05_RS07545 PF04073 Aminoacyl-tRNA editing domain RD05_RS07550 PF01174 SNO glutamine amidotransferase family RD05_RS07565 PF00768 D-alanyl-D-alanine carboxypeptidase RD05_RS07575 PF07690 Major Facilitator Superfamily RD05_RS07585 PF00580 UvrD/REP helicase N-terminal domain RD05_RS07585 PF12705 PD-(D/E)XK nuclease superfamily RD05_RS07585 PF13361 UvrD-like helicase C-terminal domain RD05_RS07595 PF12170 DNA polymerase III tau subunit V interacting with alpha RD05_RS07595 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RD05_RS07595 PF12169 DNA polymerase III subunits gamma and tau domain III RD05_RS07600 PF02575 YbaB/EbfC DNA-binding family RD05_RS07605 PF02132 RecR protein RD05_RS07605 PF13662 Toprim domain RD05_RS07625 PF04228 Putative neutral zinc metallopeptidase RD05_RS07630 PF01300 Telomere recombination RD05_RS07665 PF03358 NADPH-dependent FMN reductase RD05_RS07670 PF07311 Dodecin RD05_RS07675 PF00488 MutS domain V RD05_RS07675 PF05190 MutS family domain IV RD05_RS07675 PF05188 MutS domain II RD05_RS07675 PF01624 MutS domain I RD05_RS07675 PF05192 MutS domain III RD05_RS07680 PF08007 Cupin superfamily protein RD05_RS07685 PF16970 Type-1 fimbrial protein, A RD05_RS07690 PF06804 NlpB/DapX lipoprotein RD05_RS07695 PF00701 Dihydrodipicolinate synthetase family RD05_RS07700 PF02163 Peptidase family M50 RD05_RS07710 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS07715 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS07720 PF00005 ABC transporter RD05_RS07725 PF02824 TGS domain RD05_RS07725 PF04607 Region found in RelA / SpoT proteins RD05_RS07725 PF13291 ACT domain RD05_RS07730 PF01192 RNA polymerase Rpb6 RD05_RS07735 PF00625 Guanylate kinase RD05_RS07740 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD05_RS07745 PF00034 Cytochrome c RD05_RS07755 PF00877 NlpC/P60 family RD05_RS07760 PF01048 Phosphorylase superfamily RD05_RS07760 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RD05_RS07780 PF08340 Domain of unknown function (DUF1732) RD05_RS07780 PF03755 YicC-like family, N-terminal region RD05_RS07785 PF03725 3' exoribonuclease family, domain 2 RD05_RS07785 PF01138 3' exoribonuclease family, domain 1 RD05_RS07795 PF03466 LysR substrate binding domain RD05_RS07795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS07800 PF17154 Gammaproteobacterial periplasmic sensor domain RD05_RS07800 PF00672 HAMP domain RD05_RS07800 PF00563 EAL domain RD05_RS07800 PF00990 Diguanylate cyclase, GGDEF domain RD05_RS07805 PF01725 Ham1 family RD05_RS07815 PF04055 Radical SAM superfamily RD05_RS07815 PF06969 HemN C-terminal domain RD05_RS07820 PF00120 Glutamine synthetase, catalytic domain RD05_RS07820 PF03951 Glutamine synthetase, beta-Grasp domain RD05_RS07825 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS07825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS07825 PF00989 PAS fold RD05_RS07830 PF02954 Bacterial regulatory protein, Fis family RD05_RS07830 PF00072 Response regulator receiver domain RD05_RS07830 PF00158 Sigma-54 interaction domain RD05_RS07835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS07835 PF03466 LysR substrate binding domain RD05_RS07840 PF17954 Quercetinase C-terminal cupin domain RD05_RS07840 PF02678 Pirin RD05_RS07845 PF02678 Pirin RD05_RS07845 PF05726 Pirin C-terminal cupin domain RD05_RS07855 PF00005 ABC transporter RD05_RS07855 PF08402 TOBE domain RD05_RS07860 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS07870 PF00970 Oxidoreductase FAD-binding domain RD05_RS07870 PF00175 Oxidoreductase NAD-binding domain RD05_RS07875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS07875 PF03466 LysR substrate binding domain RD05_RS07885 PF00248 Aldo/keto reductase family RD05_RS07895 PF01042 Endoribonuclease L-PSP RD05_RS07900 PF00270 DEAD/DEAH box helicase RD05_RS07900 PF00271 Helicase conserved C-terminal domain RD05_RS07900 PF17191 RecG wedge domain RD05_RS07905 PF03466 LysR substrate binding domain RD05_RS07905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS07910 PF03466 LysR substrate binding domain RD05_RS07910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS07915 PF00171 Aldehyde dehydrogenase family RD05_RS07920 PF00210 Ferritin-like domain RD05_RS07945 PF00005 ABC transporter RD05_RS07955 PF00534 Glycosyl transferases group 1 RD05_RS07965 PF02563 Polysaccharide biosynthesis/export protein RD05_RS07970 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD05_RS07970 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD05_RS07970 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD05_RS07975 PF01370 NAD dependent epimerase/dehydratase family RD05_RS07980 PF05159 Capsule polysaccharide biosynthesis protein RD05_RS07985 PF05159 Capsule polysaccharide biosynthesis protein RD05_RS07995 PF00106 short chain dehydrogenase RD05_RS08010 PF14759 Reductase C-terminal RD05_RS08010 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS08020 PF00005 ABC transporter RD05_RS08025 PF00005 ABC transporter RD05_RS08025 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD05_RS08030 PF02653 Branched-chain amino acid transport system / permease component RD05_RS08030 PF11862 Domain of unknown function (DUF3382) RD05_RS08040 PF03741 Integral membrane protein TerC family RD05_RS08050 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS08065 PF17863 AAA lid domain RD05_RS08065 PF07726 ATPase family associated with various cellular activities (AAA) RD05_RS08095 PF00884 Sulfatase RD05_RS08120 PF00196 Bacterial regulatory proteins, luxR family RD05_RS08120 PF00072 Response regulator receiver domain RD05_RS08125 PF03797 Autotransporter beta-domain RD05_RS08125 PF12951 Passenger-associated-transport-repeat RD05_RS08125 PF00082 Subtilase family RD05_RS08130 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD05_RS08135 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RD05_RS08140 PF02798 Glutathione S-transferase, N-terminal domain RD05_RS08140 PF00043 Glutathione S-transferase, C-terminal domain RD05_RS08145 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD05_RS08155 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS08165 PF01070 FMN-dependent dehydrogenase RD05_RS08170 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD05_RS08185 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS08190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS08190 PF03466 LysR substrate binding domain RD05_RS08195 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS08220 PF03358 NADPH-dependent FMN reductase RD05_RS08245 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS08255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS08255 PF03466 LysR substrate binding domain RD05_RS08270 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS08275 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD05_RS08275 PF13244 Domain of unknown function (DUF4040) RD05_RS08275 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RD05_RS08275 PF00361 Proton-conducting membrane transporter RD05_RS08280 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD05_RS08285 PF00361 Proton-conducting membrane transporter RD05_RS08290 PF01899 Na+/H+ ion antiporter subunit RD05_RS08295 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RD05_RS08320 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD05_RS08325 PF17676 LD-carboxypeptidase C-terminal domain RD05_RS08325 PF02016 LD-carboxypeptidase N-terminal domain RD05_RS08330 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS08335 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD05_RS08345 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS08350 PF00005 ABC transporter RD05_RS08350 PF12848 ABC transporter RD05_RS08355 PF00005 ABC transporter RD05_RS08390 PF00175 Oxidoreductase NAD-binding domain RD05_RS08390 PF00042 Globin RD05_RS08390 PF00970 Oxidoreductase FAD-binding domain RD05_RS08395 PF02082 Transcriptional regulator RD05_RS08400 PF01266 FAD dependent oxidoreductase RD05_RS08415 PF01571 Aminomethyltransferase folate-binding domain RD05_RS08420 PF02618 YceG-like family RD05_RS08425 PF02223 Thymidylate kinase RD05_RS08430 PF12169 DNA polymerase III subunits gamma and tau domain III RD05_RS08435 PF01026 TatD related DNase RD05_RS08450 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS08460 PF00005 ABC transporter RD05_RS08465 PF00491 Arginase family RD05_RS08470 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD05_RS08470 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD05_RS08475 PF00171 Aldehyde dehydrogenase family RD05_RS08480 PF07687 Peptidase dimerisation domain RD05_RS08480 PF01546 Peptidase family M20/M25/M40 RD05_RS08485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD05_RS08485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD05_RS08485 PF00205 Thiamine pyrophosphate enzyme, central domain RD05_RS08495 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD05_RS08495 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD05_RS08505 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS08505 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD05_RS08510 PF07729 FCD domain RD05_RS08510 PF00392 Bacterial regulatory proteins, gntR family RD05_RS08520 PF04343 Protein of unknown function, DUF488 RD05_RS08540 PF01425 Amidase RD05_RS08545 PF07286 Protein of unknown function (DUF1445) RD05_RS08555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS08555 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS08555 PF01627 Hpt domain RD05_RS08555 PF00989 PAS fold RD05_RS08555 PF00072 Response regulator receiver domain RD05_RS08555 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS08560 PF00196 Bacterial regulatory proteins, luxR family RD05_RS08560 PF00072 Response regulator receiver domain RD05_RS08565 PF13332 Hemagglutinin repeat RD05_RS08565 PF05594 Haemagluttinin repeat RD05_RS08565 PF05860 haemagglutination activity domain RD05_RS08565 PF13018 Extended Signal Peptide of Type V secretion system RD05_RS08570 PF16970 Type-1 fimbrial protein, A RD05_RS08575 PF02753 Pili assembly chaperone PapD, C-terminal domain RD05_RS08575 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RD05_RS08580 PF13954 PapC N-terminal domain RD05_RS08580 PF13953 PapC C-terminal domain RD05_RS08580 PF00577 Outer membrane usher protein RD05_RS08585 PF00419 Fimbrial protein RD05_RS08590 PF17287 POTRA domain RD05_RS08590 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD05_RS08590 PF08479 POTRA domain, ShlB-type RD05_RS08605 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS08630 PF03466 LysR substrate binding domain RD05_RS08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS08640 PF01968 Hydantoinase/oxoprolinase RD05_RS08640 PF05378 Hydantoinase/oxoprolinase N-terminal region RD05_RS08655 PF00924 Mechanosensitive ion channel RD05_RS08655 PF05552 Conserved TM helix RD05_RS08665 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS08670 PF00588 SpoU rRNA Methylase family RD05_RS08675 PF00459 Inositol monophosphatase family RD05_RS08680 PF03471 Transporter associated domain RD05_RS08680 PF03741 Integral membrane protein TerC family RD05_RS08685 PF02673 Bacitracin resistance protein BacA RD05_RS08690 PF00149 Calcineurin-like phosphoesterase RD05_RS08695 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RD05_RS08705 PF01406 tRNA synthetases class I (C) catalytic domain RD05_RS08705 PF09190 DALR domain RD05_RS08710 PF00730 HhH-GPD superfamily base excision DNA repair protein RD05_RS08710 PF06029 AlkA N-terminal domain RD05_RS08710 PF02805 Metal binding domain of Ada RD05_RS08710 PF12833 Helix-turn-helix domain RD05_RS08715 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RD05_RS08725 PF09179 TilS substrate binding domain RD05_RS08725 PF01171 PP-loop family RD05_RS08730 PF01842 ACT domain RD05_RS08730 PF00696 Amino acid kinase family RD05_RS08730 PF13840 ACT domain RD05_RS08755 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD05_RS08755 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD05_RS08760 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD05_RS08760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD05_RS08765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD05_RS08770 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS08775 PF00561 alpha/beta hydrolase fold RD05_RS08780 PF03447 Homoserine dehydrogenase, NAD binding domain RD05_RS08780 PF01958 Domain of unknown function DUF108 RD05_RS08795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS08795 PF03466 LysR substrate binding domain RD05_RS08815 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS08820 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS08825 PF00005 ABC transporter RD05_RS08825 PF08402 TOBE domain RD05_RS08835 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS08835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD05_RS08840 PF09339 IclR helix-turn-helix domain RD05_RS08840 PF01614 Bacterial transcriptional regulator RD05_RS08845 PF13380 CoA binding domain RD05_RS08850 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS08855 PF01042 Endoribonuclease L-PSP RD05_RS08880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD05_RS08890 PF00535 Glycosyl transferase family 2 RD05_RS08895 PF01522 Polysaccharide deacetylase RD05_RS08895 PF14883 Hypothetical glycosyl hydrolase family 13 RD05_RS08915 PF12802 MarR family RD05_RS08930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD05_RS08930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD05_RS08930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD05_RS08930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD05_RS08935 PF00342 Phosphoglucose isomerase RD05_RS08940 PF00132 Bacterial transferase hexapeptide (six repeats) RD05_RS08950 PF02146 Sir2 family RD05_RS08955 PF00459 Inositol monophosphatase family RD05_RS08960 PF00171 Aldehyde dehydrogenase family RD05_RS08965 PF00202 Aminotransferase class-III RD05_RS08970 PF00392 Bacterial regulatory proteins, gntR family RD05_RS08970 PF00155 Aminotransferase class I and II RD05_RS08980 PF00580 UvrD/REP helicase N-terminal domain RD05_RS08980 PF13361 UvrD-like helicase C-terminal domain RD05_RS08985 PF01544 CorA-like Mg2+ transporter protein RD05_RS08995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS09000 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS09005 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS09005 PF12911 N-terminal TM domain of oligopeptide transport permease C RD05_RS09010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS09010 PF00005 ABC transporter RD05_RS09015 PF01047 MarR family RD05_RS09030 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD05_RS09030 PF08479 POTRA domain, ShlB-type RD05_RS09035 PF00563 EAL domain RD05_RS09035 PF00990 Diguanylate cyclase, GGDEF domain RD05_RS09035 PF03707 Bacterial signalling protein N terminal repeat RD05_RS09065 PF00263 Bacterial type II and III secretion system protein RD05_RS09065 PF04972 BON domain RD05_RS09065 PF13629 Pilus formation protein N terminal region RD05_RS09075 PF00437 Type II/IV secretion system protein RD05_RS09105 PF02954 Bacterial regulatory protein, Fis family RD05_RS09105 PF00072 Response regulator receiver domain RD05_RS09105 PF00158 Sigma-54 interaction domain RD05_RS09120 PF08281 Sigma-70, region 4 RD05_RS09120 PF04542 Sigma-70 region 2 RD05_RS09130 PF00034 Cytochrome c RD05_RS09135 PF09285 Elongation factor P, C-terminal RD05_RS09135 PF08207 Elongation factor P (EF-P) KOW-like domain RD05_RS09135 PF01132 Elongation factor P (EF-P) OB domain RD05_RS09150 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RD05_RS09155 PF00694 Aconitase C-terminal domain RD05_RS09155 PF00330 Aconitase family (aconitate hydratase) RD05_RS09165 PF00593 TonB dependent receptor RD05_RS09165 PF07715 TonB-dependent Receptor Plug Domain RD05_RS09180 PF00691 OmpA family RD05_RS09190 PF00330 Aconitase family (aconitate hydratase) RD05_RS09190 PF06434 Aconitate hydratase 2 N-terminus RD05_RS09190 PF11791 Aconitate B N-terminal domain RD05_RS09215 PF00892 EamA-like transporter family RD05_RS09220 PF01925 Sulfite exporter TauE/SafE RD05_RS09235 PF03466 LysR substrate binding domain RD05_RS09235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS09240 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RD05_RS09240 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RD05_RS09250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS09250 PF03466 LysR substrate binding domain RD05_RS09295 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD05_RS09295 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD05_RS09300 PF01425 Amidase RD05_RS09310 PF00171 Aldehyde dehydrogenase family RD05_RS09325 PF09334 tRNA synthetases class I (M) RD05_RS09325 PF00133 tRNA synthetases class I (I, L, M and V) RD05_RS09325 PF13603 Leucyl-tRNA synthetase, Domain 2 RD05_RS09325 PF08264 Anticodon-binding domain of tRNA RD05_RS09330 PF07690 Major Facilitator Superfamily RD05_RS09335 PF01047 MarR family RD05_RS09355 PF01740 STAS domain RD05_RS09355 PF00916 Sulfate permease family RD05_RS09360 PF00471 Ribosomal protein L33 RD05_RS09365 PF00830 Ribosomal L28 family RD05_RS09370 PF07690 Major Facilitator Superfamily RD05_RS09390 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS09395 PF00571 CBS domain RD05_RS09395 PF00005 ABC transporter RD05_RS09400 PF01361 Tautomerase enzyme RD05_RS09405 PF00108 Thiolase, N-terminal domain RD05_RS09405 PF02803 Thiolase, C-terminal domain RD05_RS09415 PF07729 FCD domain RD05_RS09415 PF00392 Bacterial regulatory proteins, gntR family RD05_RS09425 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS09435 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS09440 PF00080 Copper/zinc superoxide dismutase (SODC) RD05_RS09455 PF00005 ABC transporter RD05_RS09460 PF03459 TOBE domain RD05_RS09460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS09480 PF00529 HlyD membrane-fusion protein of T1SS RD05_RS09480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD05_RS09485 PF00873 AcrB/AcrD/AcrF family RD05_RS09490 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RD05_RS09490 PF02321 Outer membrane efflux protein RD05_RS09495 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RD05_RS09500 PF01648 4'-phosphopantetheinyl transferase superfamily RD05_RS09505 PF00933 Glycosyl hydrolase family 3 N terminal domain RD05_RS09510 PF08459 UvrC Helix-hairpin-helix N-terminal RD05_RS09510 PF02151 UvrB/uvrC motif RD05_RS09510 PF01541 GIY-YIG catalytic domain RD05_RS09515 PF01066 CDP-alcohol phosphatidyltransferase RD05_RS09530 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RD05_RS09530 PF14489 QueF-like protein RD05_RS09535 PF00463 Isocitrate lyase family RD05_RS09550 PF02653 Branched-chain amino acid transport system / permease component RD05_RS09550 PF11862 Domain of unknown function (DUF3382) RD05_RS09555 PF02653 Branched-chain amino acid transport system / permease component RD05_RS09560 PF13458 Periplasmic binding protein RD05_RS09565 PF00355 Rieske [2Fe-2S] domain RD05_RS09565 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD05_RS09570 PF00866 Ring hydroxylating beta subunit RD05_RS09575 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS09585 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS09590 PF02515 CoA-transferase family III RD05_RS09595 PF07859 alpha/beta hydrolase fold RD05_RS09600 PF14535 AMP-binding enzyme C-terminal domain RD05_RS09600 PF00501 AMP-binding enzyme RD05_RS09605 PF02803 Thiolase, C-terminal domain RD05_RS09605 PF00108 Thiolase, N-terminal domain RD05_RS09615 PF12228 Protein of unknown function (DUF3604) RD05_RS09620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS09620 PF03466 LysR substrate binding domain RD05_RS09625 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS09645 PF01152 Bacterial-like globin RD05_RS09680 PF01425 Amidase RD05_RS09685 PF01425 Amidase RD05_RS09695 PF01522 Polysaccharide deacetylase RD05_RS09700 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS09725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD05_RS09725 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS09750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS09750 PF03466 LysR substrate binding domain RD05_RS09760 PF01799 [2Fe-2S] binding domain RD05_RS09760 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS09765 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD05_RS09775 PF06719 AraC-type transcriptional regulator N-terminus RD05_RS09775 PF12833 Helix-turn-helix domain RD05_RS09795 PF07690 Major Facilitator Superfamily RD05_RS09810 PF00583 Acetyltransferase (GNAT) family RD05_RS09820 PF00005 ABC transporter RD05_RS09820 PF00664 ABC transporter transmembrane region RD05_RS09830 PF02535 ZIP Zinc transporter RD05_RS09845 PF01740 STAS domain RD05_RS09845 PF00916 Sulfate permease family RD05_RS09865 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD05_RS09865 PF03625 Domain of unknown function DUF302 RD05_RS09875 PF02805 Metal binding domain of Ada RD05_RS09875 PF12833 Helix-turn-helix domain RD05_RS09880 PF07237 Protein of unknown function (DUF1428) RD05_RS09885 PF02567 Phenazine biosynthesis-like protein RD05_RS09890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS09890 PF03466 LysR substrate binding domain RD05_RS09895 PF04286 Protein of unknown function (DUF445) RD05_RS09910 PF00171 Aldehyde dehydrogenase family RD05_RS09915 PF00158 Sigma-54 interaction domain RD05_RS09915 PF01590 GAF domain RD05_RS09915 PF02954 Bacterial regulatory protein, Fis family RD05_RS09930 PF04172 LrgB-like family RD05_RS09935 PF03788 LrgA family RD05_RS09940 PF13649 Methyltransferase domain RD05_RS09950 PF00155 Aminotransferase class I and II RD05_RS09955 PF00202 Aminotransferase class-III RD05_RS09990 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RD05_RS09990 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD05_RS09995 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RD05_RS09995 PF12801 4Fe-4S binding domain RD05_RS09995 PF13746 4Fe-4S dicluster domain RD05_RS10020 PF00005 ABC transporter RD05_RS10025 PF01061 ABC-2 type transporter RD05_RS10030 PF01594 AI-2E family transporter RD05_RS10060 PF03979 Sigma-70 factor, region 1.1 RD05_RS10060 PF04539 Sigma-70 region 3 RD05_RS10060 PF04546 Sigma-70, non-essential region RD05_RS10060 PF00140 Sigma-70 factor, region 1.2 RD05_RS10060 PF04545 Sigma-70, region 4 RD05_RS10060 PF04542 Sigma-70 region 2 RD05_RS10065 PF10410 DnaB-helicase binding domain of primase RD05_RS10065 PF08275 DNA primase catalytic core, N-terminal domain RD05_RS10065 PF01807 CHC2 zinc finger RD05_RS10065 PF08278 DNA primase DnaG DnaB-binding RD05_RS10070 PF01165 Ribosomal protein S21 RD05_RS10075 PF00156 Phosphoribosyl transferase domain RD05_RS10080 PF00709 Adenylosuccinate synthetase RD05_RS10085 PF13393 Histidyl-tRNA synthetase RD05_RS10090 PF01145 SPFH domain / Band 7 family RD05_RS10095 PF01145 SPFH domain / Band 7 family RD05_RS10095 PF12221 Bacterial membrane protein N terminal RD05_RS10100 PF16360 GTP-binding GTPase Middle Region RD05_RS10100 PF13167 GTP-binding GTPase N-terminal RD05_RS10100 PF01926 50S ribosome-binding GTPase RD05_RS10105 PF17209 Hfq protein RD05_RS10110 PF00155 Aminotransferase class I and II RD05_RS10115 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RD05_RS10115 PF01926 50S ribosome-binding GTPase RD05_RS10120 PF13360 PQQ-like domain RD05_RS10125 PF09976 Tetratricopeptide repeat-like domain RD05_RS10130 PF03129 Anticodon binding domain RD05_RS10130 PF13393 Histidyl-tRNA synthetase RD05_RS10135 PF04551 GcpE protein RD05_RS10145 PF04055 Radical SAM superfamily RD05_RS10150 PF00334 Nucleoside diphosphate kinase RD05_RS10155 PF08264 Anticodon-binding domain of tRNA RD05_RS10155 PF10458 Valyl tRNA synthetase tRNA binding arm RD05_RS10155 PF00133 tRNA synthetases class I (I, L, M and V) RD05_RS10165 PF00072 Response regulator receiver domain RD05_RS10165 PF00486 Transcriptional regulatory protein, C terminal RD05_RS10170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS10170 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS10170 PF08521 Two-component sensor kinase N-terminal RD05_RS10190 PF00266 Aminotransferase class-V RD05_RS10195 PF01746 tRNA (Guanine-1)-methyltransferase RD05_RS10200 PF01782 RimM N-terminal domain RD05_RS10205 PF00886 Ribosomal protein S16 RD05_RS10215 PF01206 Sulfurtransferase TusA RD05_RS10220 PF01411 tRNA synthetases class II (A) RD05_RS10220 PF02272 DHHA1 domain RD05_RS10220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD05_RS10265 PF01425 Amidase RD05_RS10270 PF00005 ABC transporter RD05_RS10270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS10275 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS10280 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS10285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS10300 PF03466 LysR substrate binding domain RD05_RS10300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS10305 PF13416 Bacterial extracellular solute-binding protein RD05_RS10310 PF01266 FAD dependent oxidoreductase RD05_RS10315 PF00970 Oxidoreductase FAD-binding domain RD05_RS10315 PF00175 Oxidoreductase NAD-binding domain RD05_RS10315 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS10320 PF02261 Aspartate decarboxylase RD05_RS10335 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD05_RS10340 PF17042 Nucleotide-binding C-terminal domain RD05_RS10340 PF07005 Sugar-binding N-terminal domain RD05_RS10345 PF03812 2-keto-3-deoxygluconate permease RD05_RS10360 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS10370 PF02142 MGS-like domain RD05_RS10375 PF04384 Iron-sulphur cluster assembly RD05_RS10380 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS10385 PF00012 Hsp70 protein RD05_RS10390 PF07743 HSCB C-terminal oligomerisation domain RD05_RS10395 PF01521 Iron-sulphur cluster biosynthesis RD05_RS10400 PF01592 NifU-like N terminal domain RD05_RS10405 PF00266 Aminotransferase class-V RD05_RS10410 PF02082 Transcriptional regulator RD05_RS10415 PF01451 Low molecular weight phosphotyrosine protein phosphatase RD05_RS10420 PF02151 UvrB/uvrC motif RD05_RS10420 PF04851 Type III restriction enzyme, res subunit RD05_RS10420 PF00271 Helicase conserved C-terminal domain RD05_RS10420 PF17757 UvrB interaction domain RD05_RS10420 PF12344 Ultra-violet resistance protein B RD05_RS10425 PF00155 Aminotransferase class I and II RD05_RS10430 PF00717 Peptidase S24-like RD05_RS10430 PF01726 LexA DNA binding domain RD05_RS10435 PF03212 Pertactin RD05_RS10435 PF03797 Autotransporter beta-domain RD05_RS10455 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS10460 PF01144 Coenzyme A transferase RD05_RS10465 PF01144 Coenzyme A transferase RD05_RS10475 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS10475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS10475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS10485 PF02803 Thiolase, C-terminal domain RD05_RS10485 PF00108 Thiolase, N-terminal domain RD05_RS10495 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS10500 PF01575 MaoC like domain RD05_RS10505 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS10510 PF02515 CoA-transferase family III RD05_RS10515 PF03466 LysR substrate binding domain RD05_RS10515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS10520 PF02190 ATP-dependent protease La (LON) substrate-binding domain RD05_RS10520 PF05362 Lon protease (S16) C-terminal proteolytic domain RD05_RS10520 PF00004 ATPase family associated with various cellular activities (AAA) RD05_RS10525 PF07724 AAA domain (Cdc48 subfamily) RD05_RS10525 PF10431 C-terminal, D2-small domain, of ClpB protein RD05_RS10525 PF06689 ClpX C4-type zinc finger RD05_RS10530 PF00574 Clp protease RD05_RS10535 PF05697 Bacterial trigger factor protein (TF) RD05_RS10535 PF05698 Bacterial trigger factor protein (TF) C-terminus RD05_RS10535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD05_RS10540 PF03350 Uncharacterized protein family, UPF0114 RD05_RS10545 PF00313 'Cold-shock' DNA-binding domain RD05_RS10555 PF00313 'Cold-shock' DNA-binding domain RD05_RS10590 PF00132 Bacterial transferase hexapeptide (six repeats) RD05_RS10590 PF14602 Hexapeptide repeat of succinyl-transferase RD05_RS10590 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RD05_RS10595 PF07687 Peptidase dimerisation domain RD05_RS10595 PF01546 Peptidase family M20/M25/M40 RD05_RS10600 PF05175 Methyltransferase small domain RD05_RS10605 PF00005 ABC transporter RD05_RS10605 PF12848 ABC transporter RD05_RS10610 PF07715 TonB-dependent Receptor Plug Domain RD05_RS10615 PF13361 UvrD-like helicase C-terminal domain RD05_RS10615 PF00580 UvrD/REP helicase N-terminal domain RD05_RS10635 PF01189 16S rRNA methyltransferase RsmB/F RD05_RS10635 PF01029 NusB family RD05_RS10640 PF01687 Riboflavin kinase RD05_RS10640 PF06574 FAD synthetase RD05_RS10645 PF06827 Zinc finger found in FPG and IleRS RD05_RS10645 PF08264 Anticodon-binding domain of tRNA RD05_RS10645 PF00133 tRNA synthetases class I (I, L, M and V) RD05_RS10650 PF01252 Signal peptidase (SPase) II RD05_RS10655 PF04127 DNA / pantothenate metabolism flavoprotein RD05_RS10655 PF02441 Flavoprotein RD05_RS10665 PF01037 Lrp/AsnC ligand binding domain RD05_RS10680 PF13406 Transglycosylase SLT domain RD05_RS10685 PF04305 Protein of unknown function (DUF455) RD05_RS10705 PF02875 Mur ligase family, glutamate ligase domain RD05_RS10705 PF08245 Mur ligase middle domain RD05_RS10705 PF08443 RimK-like ATP-grasp domain RD05_RS10710 PF02875 Mur ligase family, glutamate ligase domain RD05_RS10710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD05_RS10710 PF08245 Mur ligase middle domain RD05_RS10715 PF05532 CsbD-like RD05_RS10725 PF04972 BON domain RD05_RS10740 PF00005 ABC transporter RD05_RS10745 PF13472 GDSL-like Lipase/Acylhydrolase family RD05_RS10750 PF13145 PPIC-type PPIASE domain RD05_RS10755 PF03009 Glycerophosphoryl diester phosphodiesterase family RD05_RS10760 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RD05_RS10765 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS10765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD05_RS10770 PF00462 Glutaredoxin RD05_RS10770 PF08534 Redoxin RD05_RS10780 PF09278 MerR, DNA binding RD05_RS10780 PF00376 MerR family regulatory protein RD05_RS10785 PF05958 tRNA (Uracil-5-)-methyltransferase RD05_RS10805 PF01551 Peptidase family M23 RD05_RS10805 PF01476 LysM domain RD05_RS10815 PF01975 Survival protein SurE RD05_RS10820 PF02660 Glycerol-3-phosphate acyltransferase RD05_RS10830 PF00814 Glycoprotease family RD05_RS10835 PF00860 Permease family RD05_RS10845 PF00085 Thioredoxin RD05_RS10850 PF01205 Uncharacterized protein family UPF0029 RD05_RS10860 PF00583 Acetyltransferase (GNAT) family RD05_RS10865 PF12802 MarR family RD05_RS10875 PF00202 Aminotransferase class-III RD05_RS10880 PF16868 NMT1-like family RD05_RS10900 PF03797 Autotransporter beta-domain RD05_RS10910 PF13091 PLD-like domain RD05_RS10910 PF13396 Phospholipase_D-nuclease N-terminal RD05_RS10915 PF01740 STAS domain RD05_RS10920 PF13581 Histidine kinase-like ATPase domain RD05_RS10925 PF01168 Alanine racemase, N-terminal domain RD05_RS10925 PF00842 Alanine racemase, C-terminal domain RD05_RS10935 PF00672 HAMP domain RD05_RS10935 PF07228 Stage II sporulation protein E (SpoIIE) RD05_RS10960 PF08281 Sigma-70, region 4 RD05_RS10960 PF04542 Sigma-70 region 2 RD05_RS10965 PF03958 Bacterial type II/III secretion system short domain RD05_RS10965 PF00263 Bacterial type II and III secretion system protein RD05_RS10975 PF01312 FlhB HrpN YscU SpaS Family RD05_RS10980 PF01311 Bacterial export proteins, family 1 RD05_RS10985 PF01313 Bacterial export proteins, family 3 RD05_RS10990 PF00813 FliP family RD05_RS10995 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD05_RS11010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD05_RS11010 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD05_RS11010 PF18269 T3SS EscN ATPase C-terminal domain RD05_RS11015 PF02108 Flagellar assembly protein FliH RD05_RS11025 PF01514 Secretory protein of YscJ/FliF family RD05_RS11090 PF00771 FHIPEP family RD05_RS11120 PF03449 Transcription elongation factor, N-terminal RD05_RS11120 PF01272 Transcription elongation factor, GreA/GreB, C-term RD05_RS11125 PF02203 Tar ligand binding domain homologue RD05_RS11125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD05_RS11125 PF00672 HAMP domain RD05_RS11130 PF00860 Permease family RD05_RS11155 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS11165 PF13419 Haloacid dehalogenase-like hydrolase RD05_RS11170 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS11175 PF08402 TOBE domain RD05_RS11175 PF00005 ABC transporter RD05_RS11180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS11180 PF03466 LysR substrate binding domain RD05_RS11190 PF00581 Rhodanese-like domain RD05_RS11200 PF01435 Peptidase family M48 RD05_RS11205 PF00107 Zinc-binding dehydrogenase RD05_RS11205 PF08240 Alcohol dehydrogenase GroES-like domain RD05_RS11210 PF00892 EamA-like transporter family RD05_RS11220 PF01047 MarR family RD05_RS11230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD05_RS11230 PF00529 HlyD membrane-fusion protein of T1SS RD05_RS11235 PF07690 Major Facilitator Superfamily RD05_RS11240 PF00180 Isocitrate/isopropylmalate dehydrogenase RD05_RS11245 PF00392 Bacterial regulatory proteins, gntR family RD05_RS11245 PF00155 Aminotransferase class I and II RD05_RS11250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS11255 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS11260 PF12911 N-terminal TM domain of oligopeptide transport permease C RD05_RS11260 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS11265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS11265 PF00005 ABC transporter RD05_RS11275 PF00202 Aminotransferase class-III RD05_RS11280 PF07883 Cupin domain RD05_RS11285 PF00850 Histone deacetylase domain RD05_RS11290 PF01546 Peptidase family M20/M25/M40 RD05_RS11290 PF07687 Peptidase dimerisation domain RD05_RS11300 PF00171 Aldehyde dehydrogenase family RD05_RS11305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD05_RS11310 PF00202 Aminotransferase class-III RD05_RS11315 PF01235 Sodium:alanine symporter family RD05_RS11320 PF05872 Bacterial protein of unknown function (DUF853) RD05_RS11325 PF01709 Transcriptional regulator RD05_RS11330 PF02844 Phosphoribosylglycinamide synthetase, N domain RD05_RS11330 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RD05_RS11330 PF02843 Phosphoribosylglycinamide synthetase, C domain RD05_RS11335 PF01218 Coproporphyrinogen III oxidase RD05_RS11340 PF01467 Cytidylyltransferase-like RD05_RS11350 PF02590 Predicted SPOUT methyltransferase RD05_RS11355 PF02545 Maf-like protein RD05_RS11360 PF03212 Pertactin RD05_RS11360 PF03797 Autotransporter beta-domain RD05_RS11400 PF00575 S1 RNA binding domain RD05_RS11400 PF10150 Ribonuclease E/G family RD05_RS11405 PF01842 ACT domain RD05_RS11405 PF00800 Prephenate dehydratase RD05_RS11415 PF07690 Major Facilitator Superfamily RD05_RS11420 PF00005 ABC transporter RD05_RS11420 PF00664 ABC transporter transmembrane region RD05_RS11425 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD05_RS11435 PF03692 Putative zinc- or iron-chelating domain RD05_RS11450 PF00884 Sulfatase RD05_RS11455 PF00534 Glycosyl transferases group 1 RD05_RS11455 PF13439 Glycosyltransferase Family 4 RD05_RS11460 PF00535 Glycosyl transferase family 2 RD05_RS11465 PF01522 Polysaccharide deacetylase RD05_RS11470 PF00534 Glycosyl transferases group 1 RD05_RS11470 PF13439 Glycosyltransferase Family 4 RD05_RS11475 PF02811 PHP domain RD05_RS11475 PF14579 Helix-hairpin-helix motif RD05_RS11475 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RD05_RS11475 PF07733 Bacterial DNA polymerase III alpha NTPase domain RD05_RS11475 PF01336 OB-fold nucleic acid binding domain RD05_RS11485 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RD05_RS11485 PF00271 Helicase conserved C-terminal domain RD05_RS11485 PF04408 Helicase associated domain (HA2) RD05_RS11485 PF11898 Domain of unknown function (DUF3418) RD05_RS11485 PF00270 DEAD/DEAH box helicase RD05_RS11490 PF00583 Acetyltransferase (GNAT) family RD05_RS11490 PF00696 Amino acid kinase family RD05_RS11495 PF04362 Bacterial Fe(2+) trafficking RD05_RS11500 PF04185 Phosphoesterase family RD05_RS11500 PF05506 Domain of unknown function (DUF756) RD05_RS11505 PF01895 PhoU domain RD05_RS11510 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RD05_RS11515 PF18158 Adaptive response protein AidB N-terminal domain RD05_RS11515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS11515 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS11520 PF02646 RmuC family RD05_RS11530 PF02245 Methylpurine-DNA glycosylase (MPG) RD05_RS11540 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS11545 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS11550 PF08402 TOBE domain RD05_RS11550 PF00005 ABC transporter RD05_RS11555 PF13416 Bacterial extracellular solute-binding protein RD05_RS11575 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS11585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD05_RS11585 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD05_RS11605 PF00285 Citrate synthase, C-terminal domain RD05_RS11610 PF03937 Flavinator of succinate dehydrogenase RD05_RS11615 PF13085 2Fe-2S iron-sulfur cluster binding domain RD05_RS11620 PF00890 FAD binding domain RD05_RS11620 PF02910 Fumarate reductase flavoprotein C-term RD05_RS11625 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD05_RS11630 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD05_RS11635 PF00392 Bacterial regulatory proteins, gntR family RD05_RS11635 PF07702 UTRA domain RD05_RS11640 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RD05_RS11640 PF00056 lactate/malate dehydrogenase, NAD binding domain RD05_RS11650 PF00285 Citrate synthase, C-terminal domain RD05_RS11655 PF00330 Aconitase family (aconitate hydratase) RD05_RS11655 PF00694 Aconitase C-terminal domain RD05_RS11660 PF04303 PrpF protein RD05_RS11665 PF03972 MmgE/PrpD family RD05_RS11670 PF03653 Uncharacterised protein family (UPF0093) RD05_RS11675 PF01170 Putative RNA methylase family UPF0020 RD05_RS11675 PF02926 THUMP domain RD05_RS11695 PF16177 Acetyl-coenzyme A synthetase N-terminus RD05_RS11695 PF00501 AMP-binding enzyme RD05_RS11695 PF13193 AMP-binding enzyme C-terminal domain RD05_RS11705 PF01430 Hsp33 protein RD05_RS11730 PF00211 Adenylate and Guanylate cyclase catalytic domain RD05_RS11735 PF04977 Septum formation initiator RD05_RS11740 PF03952 Enolase, N-terminal domain RD05_RS11740 PF00113 Enolase, C-terminal TIM barrel domain RD05_RS11750 PF00793 DAHP synthetase I family RD05_RS11755 PF00117 Glutamine amidotransferase class-I RD05_RS11755 PF06418 CTP synthase N-terminus RD05_RS11765 PF01321 Creatinase/Prolidase N-terminal domain RD05_RS11765 PF00557 Metallopeptidase family M24 RD05_RS11775 PF03576 Peptidase family S58 RD05_RS11780 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS11780 PF12911 N-terminal TM domain of oligopeptide transport permease C RD05_RS11785 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS11790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS11795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS11795 PF00005 ABC transporter RD05_RS11800 PF01112 Asparaginase RD05_RS11810 PF01144 Coenzyme A transferase RD05_RS11830 PF16363 GDP-mannose 4,6 dehydratase RD05_RS11845 PF01212 Beta-eliminating lyase RD05_RS11850 PF00892 EamA-like transporter family RD05_RS11855 PF00501 AMP-binding enzyme RD05_RS11855 PF16177 Acetyl-coenzyme A synthetase N-terminus RD05_RS11855 PF13193 AMP-binding enzyme C-terminal domain RD05_RS11865 PF03928 Haem-degrading RD05_RS11870 PF13193 AMP-binding enzyme C-terminal domain RD05_RS11870 PF00501 AMP-binding enzyme RD05_RS11870 PF16177 Acetyl-coenzyme A synthetase N-terminus RD05_RS11875 PF00877 NlpC/P60 family RD05_RS11890 PF03466 LysR substrate binding domain RD05_RS11890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS11895 PF00171 Aldehyde dehydrogenase family RD05_RS11905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS11905 PF03466 LysR substrate binding domain RD05_RS11915 PF00883 Cytosol aminopeptidase family, catalytic domain RD05_RS11915 PF02789 Cytosol aminopeptidase family, N-terminal domain RD05_RS11920 PF04364 DNA polymerase III chi subunit, HolC RD05_RS11930 PF01027 Inhibitor of apoptosis-promoting Bax1 RD05_RS11935 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS11950 PF00291 Pyridoxal-phosphate dependent enzyme RD05_RS11960 PF02565 Recombination protein O C terminal RD05_RS11960 PF11967 Recombination protein O N terminal RD05_RS11965 PF01926 50S ribosome-binding GTPase RD05_RS11965 PF07650 KH domain RD05_RS11970 PF00035 Double-stranded RNA binding motif RD05_RS11970 PF14622 Ribonuclease-III-like RD05_RS11975 PF10502 Signal peptidase, peptidase S26 RD05_RS11980 PF06421 GTP-binding protein LepA C-terminus RD05_RS11980 PF03144 Elongation factor Tu domain 2 RD05_RS11980 PF00009 Elongation factor Tu GTP binding domain RD05_RS11980 PF00679 Elongation factor G C-terminus RD05_RS11985 PF13180 PDZ domain RD05_RS12000 PF04542 Sigma-70 region 2 RD05_RS12000 PF08281 Sigma-70, region 4 RD05_RS12010 PF02801 Beta-ketoacyl synthase, C-terminal domain RD05_RS12010 PF00109 Beta-ketoacyl synthase, N-terminal domain RD05_RS12015 PF00550 Phosphopantetheine attachment site RD05_RS12025 PF00698 Acyl transferase domain RD05_RS12030 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD05_RS12030 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD05_RS12035 PF02504 Fatty acid synthesis protein RD05_RS12040 PF01783 Ribosomal L32p protein family RD05_RS12045 PF02620 Large ribosomal RNA subunit accumulation protein YceD RD05_RS12050 PF02545 Maf-like protein RD05_RS12060 PF01510 N-acetylmuramoyl-L-alanine amidase RD05_RS12065 PF12805 FUSC-like inner membrane protein yccS RD05_RS12075 PF03883 Peroxide stress protein YaaA RD05_RS12090 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RD05_RS12095 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD05_RS12105 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS12110 PF01416 tRNA pseudouridine synthase RD05_RS12120 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD05_RS12120 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD05_RS12125 PF00180 Isocitrate/isopropylmalate dehydrogenase RD05_RS12130 PF00694 Aconitase C-terminal domain RD05_RS12135 PF00330 Aconitase family (aconitate hydratase) RD05_RS12140 PF12849 PBP superfamily domain RD05_RS12145 PF00005 ABC transporter RD05_RS12150 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS12175 PF13247 4Fe-4S dicluster domain RD05_RS12180 PF00384 Molybdopterin oxidoreductase RD05_RS12180 PF01568 Molydopterin dinucleotide binding domain RD05_RS12180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RD05_RS12210 PF10609 NUBPL iron-transfer P-loop NTPase RD05_RS12215 PF12804 MobA-like NTP transferase domain RD05_RS12220 PF00994 Probable molybdopterin binding domain RD05_RS12220 PF03454 MoeA C-terminal region (domain IV) RD05_RS12220 PF03453 MoeA N-terminal region (domain I and II) RD05_RS12225 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RD05_RS12230 PF01435 Peptidase family M48 RD05_RS12235 PF01264 Chorismate synthase RD05_RS12240 PF08448 PAS fold RD05_RS12240 PF00563 EAL domain RD05_RS12240 PF08447 PAS fold RD05_RS12240 PF00990 Diguanylate cyclase, GGDEF domain RD05_RS12255 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS12260 PF08402 TOBE domain RD05_RS12260 PF00005 ABC transporter RD05_RS12265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS12265 PF03466 LysR substrate binding domain RD05_RS12270 PF00300 Histidine phosphatase superfamily (branch 1) RD05_RS12280 PF02142 MGS-like domain RD05_RS12280 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RD05_RS12280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD05_RS12285 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RD05_RS12285 PF00117 Glutamine amidotransferase class-I RD05_RS12290 PF00923 Transaldolase/Fructose-6-phosphate aldolase RD05_RS12315 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD05_RS12315 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD05_RS12320 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS12325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS12325 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS12325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS12330 PF03658 RnfH family Ubiquitin RD05_RS12335 PF03364 Polyketide cyclase / dehydrase and lipid transport RD05_RS12345 PF01668 SmpB protein RD05_RS12350 PF08448 PAS fold RD05_RS12350 PF00990 Diguanylate cyclase, GGDEF domain RD05_RS12355 PF16200 C-terminal region of band_7 RD05_RS12355 PF01145 SPFH domain / Band 7 family RD05_RS12370 PF00958 GMP synthase C terminal domain RD05_RS12370 PF00117 Glutamine amidotransferase class-I RD05_RS12375 PF02896 PEP-utilising enzyme, TIM barrel domain RD05_RS12375 PF00391 PEP-utilising enzyme, mobile domain RD05_RS12375 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RD05_RS12380 PF03618 Kinase/pyrophosphorylase RD05_RS12385 PF00588 SpoU rRNA Methylase family RD05_RS12385 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD05_RS12390 PF01351 Ribonuclease HII RD05_RS12395 PF02684 Lipid-A-disaccharide synthetase RD05_RS12400 PF00132 Bacterial transferase hexapeptide (six repeats) RD05_RS12400 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RD05_RS12405 PF07977 FabA-like domain RD05_RS12410 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RD05_RS12410 PF00132 Bacterial transferase hexapeptide (six repeats) RD05_RS12415 PF03938 Outer membrane protein (OmpH-like) RD05_RS12420 PF07244 Surface antigen variable number repeat RD05_RS12420 PF01103 Surface antigen RD05_RS12425 PF17820 PDZ domain RD05_RS12425 PF02163 Peptidase family M50 RD05_RS12430 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RD05_RS12430 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RD05_RS12430 PF13288 DXP reductoisomerase C-terminal domain RD05_RS12440 PF01255 Putative undecaprenyl diphosphate synthase RD05_RS12445 PF01765 Ribosome recycling factor RD05_RS12450 PF00696 Amino acid kinase family RD05_RS12455 PF00889 Elongation factor TS RD05_RS12460 PF00318 Ribosomal protein S2 RD05_RS12465 PF00557 Metallopeptidase family M24 RD05_RS12470 PF08335 GlnD PII-uridylyltransferase RD05_RS12470 PF01909 Nucleotidyltransferase domain RD05_RS12470 PF01966 HD domain RD05_RS12485 PF00156 Phosphoribosyl transferase domain RD05_RS12500 PF08245 Mur ligase middle domain RD05_RS12500 PF02875 Mur ligase family, glutamate ligase domain RD05_RS12510 PF07195 Flagellar hook-associated protein 2 C-terminus RD05_RS12510 PF02465 Flagellar hook-associated protein 2 N-terminus RD05_RS12510 PF07196 Flagellin hook IN motif RD05_RS12515 PF02561 Flagellar protein FliS RD05_RS12535 PF01312 FlhB HrpN YscU SpaS Family RD05_RS12545 PF02049 Flagellar hook-basal body complex protein FliE RD05_RS12550 PF08345 Flagellar M-ring protein C-terminal RD05_RS12550 PF01514 Secretory protein of YscJ/FliF family RD05_RS12555 PF01706 FliG C-terminal domain RD05_RS12555 PF14841 FliG middle domain RD05_RS12555 PF14842 FliG N-terminal domain RD05_RS12565 PF18269 T3SS EscN ATPase C-terminal domain RD05_RS12565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD05_RS12590 PF03748 Flagellar basal body-associated protein FliL RD05_RS12595 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD05_RS12595 PF02154 Flagellar motor switch protein FliM RD05_RS12600 PF16973 Flagellar motor switch protein FliN N-terminal RD05_RS12600 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD05_RS12605 PF04347 Flagellar biosynthesis protein, FliO RD05_RS12610 PF00813 FliP family RD05_RS12615 PF01313 Bacterial export proteins, family 3 RD05_RS12620 PF01311 Bacterial export proteins, family 1 RD05_RS12630 PF08447 PAS fold RD05_RS12630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD05_RS12635 PF00672 HAMP domain RD05_RS12635 PF02203 Tar ligand binding domain homologue RD05_RS12635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD05_RS12640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD05_RS12640 PF00672 HAMP domain RD05_RS12640 PF02203 Tar ligand binding domain homologue RD05_RS12645 PF00669 Bacterial flagellin N-terminal helical region RD05_RS12650 PF00460 Flagella basal body rod protein RD05_RS12650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD05_RS12655 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RD05_RS12655 PF10135 Rod binding protein RD05_RS12660 PF02119 Flagellar P-ring protein RD05_RS12665 PF02107 Flagellar L-ring protein RD05_RS12670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD05_RS12670 PF00460 Flagella basal body rod protein RD05_RS12675 PF00460 Flagella basal body rod protein RD05_RS12675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD05_RS12680 PF07559 Flagellar basal body protein FlaE RD05_RS12680 PF00460 Flagella basal body rod protein RD05_RS12680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD05_RS12685 PF13861 FlgD Tudor-like domain RD05_RS12685 PF03963 Flagellar hook capping protein - N-terminal region RD05_RS12685 PF13860 FlgD Ig-like domain RD05_RS12690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD05_RS12690 PF00460 Flagella basal body rod protein RD05_RS12695 PF00460 Flagella basal body rod protein RD05_RS12705 PF04316 Anti-sigma-28 factor, FlgM RD05_RS12715 PF00448 SRP54-type protein, GTPase domain RD05_RS12725 PF01312 FlhB HrpN YscU SpaS Family RD05_RS12735 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS12740 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS12745 PF00005 ABC transporter RD05_RS12755 PF02558 Ketopantoate reductase PanE/ApbA RD05_RS12755 PF08546 Ketopantoate reductase PanE/ApbA C terminal RD05_RS12760 PF13378 Enolase C-terminal domain-like RD05_RS12765 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS12775 PF00694 Aconitase C-terminal domain RD05_RS12780 PF00356 Bacterial regulatory proteins, lacI family RD05_RS12785 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS12790 PF02515 CoA-transferase family III RD05_RS12800 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS12805 PF13380 CoA binding domain RD05_RS12805 PF13607 Succinyl-CoA ligase like flavodoxin domain RD05_RS12810 PF00392 Bacterial regulatory proteins, gntR family RD05_RS12810 PF07729 FCD domain RD05_RS12815 PF03328 HpcH/HpaI aldolase/citrate lyase family RD05_RS12825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS12825 PF03466 LysR substrate binding domain RD05_RS12835 PF12951 Passenger-associated-transport-repeat RD05_RS12845 PF03551 Transcriptional regulator PadR-like family RD05_RS12850 PF03372 Endonuclease/Exonuclease/phosphatase family RD05_RS12855 PF13091 PLD-like domain RD05_RS12870 PF03706 Lysylphosphatidylglycerol synthase TM region RD05_RS12900 PF00128 Alpha amylase, catalytic domain RD05_RS12900 PF11896 Domain of unknown function (DUF3416) RD05_RS12905 PF00128 Alpha amylase, catalytic domain RD05_RS12905 PF16657 Maltogenic Amylase, C-terminal domain RD05_RS12910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD05_RS12910 PF02806 Alpha amylase, C-terminal all-beta domain RD05_RS12910 PF00128 Alpha amylase, catalytic domain RD05_RS12915 PF00128 Alpha amylase, catalytic domain RD05_RS12915 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD05_RS12920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD05_RS12920 PF11941 Domain of unknown function (DUF3459) RD05_RS12920 PF00128 Alpha amylase, catalytic domain RD05_RS12930 PF02446 4-alpha-glucanotransferase RD05_RS12935 PF00128 Alpha amylase, catalytic domain RD05_RS12945 PF08543 Phosphomethylpyrimidine kinase RD05_RS12950 PF01168 Alanine racemase, N-terminal domain RD05_RS12955 PF00155 Aminotransferase class I and II RD05_RS12955 PF00392 Bacterial regulatory proteins, gntR family RD05_RS12970 PF00582 Universal stress protein family RD05_RS12975 PF00248 Aldo/keto reductase family RD05_RS12985 PF16485 Protealysin propeptide RD05_RS12985 PF02868 Thermolysin metallopeptidase, alpha-helical domain RD05_RS12985 PF01447 Thermolysin metallopeptidase, catalytic domain RD05_RS12990 PF07681 DoxX RD05_RS13010 PF00578 AhpC/TSA family RD05_RS13015 PF03960 ArsC family RD05_RS13020 PF02515 CoA-transferase family III RD05_RS13040 PF00255 Glutathione peroxidase RD05_RS13045 PF02798 Glutathione S-transferase, N-terminal domain RD05_RS13045 PF00043 Glutathione S-transferase, C-terminal domain RD05_RS13060 PF10437 Bacterial lipoate protein ligase C-terminus RD05_RS13060 PF03099 Biotin/lipoate A/B protein ligase family RD05_RS13075 PF02666 Phosphatidylserine decarboxylase RD05_RS13080 PF01070 FMN-dependent dehydrogenase RD05_RS13085 PF03180 NLPA lipoprotein RD05_RS13090 PF08808 RES domain RD05_RS13100 PF04241 Protein of unknown function (DUF423) RD05_RS13120 PF13458 Periplasmic binding protein RD05_RS13125 PF17912 MalK OB fold domain RD05_RS13125 PF00005 ABC transporter RD05_RS13130 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS13135 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS13140 PF13416 Bacterial extracellular solute-binding protein RD05_RS13145 PF14748 Pyrroline-5-carboxylate reductase dimerisation RD05_RS13145 PF03807 NADP oxidoreductase coenzyme F420-dependent RD05_RS13150 PF02592 Putative vitamin uptake transporter RD05_RS13160 PF13458 Periplasmic binding protein RD05_RS13165 PF02653 Branched-chain amino acid transport system / permease component RD05_RS13170 PF11862 Domain of unknown function (DUF3382) RD05_RS13170 PF02653 Branched-chain amino acid transport system / permease component RD05_RS13175 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD05_RS13175 PF00005 ABC transporter RD05_RS13180 PF00005 ABC transporter RD05_RS13185 PF01177 Asp/Glu/Hydantoin racemase RD05_RS13200 PF00892 EamA-like transporter family RD05_RS13210 PF04235 Protein of unknown function (DUF418) RD05_RS13215 PF00521 DNA gyrase/topoisomerase IV, subunit A RD05_RS13225 PF00204 DNA gyrase B RD05_RS13225 PF00986 DNA gyrase B subunit, carboxyl terminus RD05_RS13225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS13225 PF01751 Toprim domain RD05_RS13230 PF00085 Thioredoxin RD05_RS13235 PF07497 Rho termination factor, RNA-binding domain RD05_RS13235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD05_RS13235 PF07498 Rho termination factor, N-terminal domain RD05_RS13245 PF08335 GlnD PII-uridylyltransferase RD05_RS13245 PF03710 Glutamate-ammonia ligase adenylyltransferase RD05_RS13250 PF02677 Epoxyqueuosine reductase QueH RD05_RS13255 PF03315 Serine dehydratase beta chain RD05_RS13255 PF03313 Serine dehydratase alpha chain RD05_RS13260 PF02690 Na+/Pi-cotransporter RD05_RS13265 PF01738 Dienelactone hydrolase family RD05_RS13275 PF01367 5'-3' exonuclease, C-terminal SAM fold RD05_RS13275 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RD05_RS13275 PF00476 DNA polymerase family A RD05_RS13275 PF01612 3'-5' exonuclease RD05_RS13280 PF03641 Possible lysine decarboxylase RD05_RS13295 PF00679 Elongation factor G C-terminus RD05_RS13295 PF00009 Elongation factor Tu GTP binding domain RD05_RS13295 PF03144 Elongation factor Tu domain 2 RD05_RS13300 PF16198 tRNA pseudouridylate synthase B C-terminal domain RD05_RS13300 PF01509 TruB family pseudouridylate synthase (N terminal domain) RD05_RS13305 PF02033 Ribosome-binding factor A RD05_RS13310 PF00009 Elongation factor Tu GTP binding domain RD05_RS13310 PF11987 Translation-initiation factor 2 RD05_RS13310 PF08364 Bacterial translation initiation factor IF-2 associated region RD05_RS13310 PF04760 Translation initiation factor IF-2, N-terminal region RD05_RS13315 PF13184 NusA-like KH domain RD05_RS13315 PF08529 NusA N-terminal domain RD05_RS13320 PF17384 RimP C-terminal SH3 domain RD05_RS13320 PF02576 RimP N-terminal domain RD05_RS13325 PF01479 S4 domain RD05_RS13325 PF00849 RNA pseudouridylate synthase RD05_RS13330 PF04079 Segregation and condensation complex subunit ScpB RD05_RS13340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS13340 PF03466 LysR substrate binding domain RD05_RS13345 PF00881 Nitroreductase family RD05_RS13350 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD05_RS13350 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD05_RS13370 PF02798 Glutathione S-transferase, N-terminal domain RD05_RS13370 PF14497 Glutathione S-transferase, C-terminal domain RD05_RS13375 PF02401 LytB protein RD05_RS13380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD05_RS13385 PF04002 RadC-like JAB domain RD05_RS13390 PF04199 Putative cyclase RD05_RS13395 PF03301 Tryptophan 2,3-dioxygenase RD05_RS13400 PF01197 Ribosomal protein L31 RD05_RS13410 PF01554 MatE RD05_RS13425 PF18073 Rubredoxin metal binding domain RD05_RS13430 PF12034 Domain of unknown function (DUF3520) RD05_RS13430 PF12450 von Willebrand factor RD05_RS13430 PF00092 von Willebrand factor type A domain RD05_RS13435 PF04542 Sigma-70 region 2 RD05_RS13435 PF04545 Sigma-70, region 4 RD05_RS13455 PF01168 Alanine racemase, N-terminal domain RD05_RS13455 PF00842 Alanine racemase, C-terminal domain RD05_RS13470 PF01593 Flavin containing amine oxidoreductase RD05_RS13470 PF01593 Flavin containing amine oxidoreductase RD05_RS13475 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD05_RS13485 PF01061 ABC-2 type transporter RD05_RS13490 PF00005 ABC transporter RD05_RS13510 PF02424 ApbE family RD05_RS13515 PF00667 FAD binding domain RD05_RS13515 PF00175 Oxidoreductase NAD-binding domain RD05_RS13515 PF00258 Flavodoxin RD05_RS13525 PF07969 Amidohydrolase family RD05_RS13530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS13530 PF03466 LysR substrate binding domain RD05_RS13540 PF09370 Phosphoenolpyruvate hydrolase-like RD05_RS13555 PF03797 Autotransporter beta-domain RD05_RS13555 PF03212 Pertactin RD05_RS13560 PF03797 Autotransporter beta-domain RD05_RS13560 PF03212 Pertactin RD05_RS13570 PF10431 C-terminal, D2-small domain, of ClpB protein RD05_RS13570 PF17871 AAA lid domain RD05_RS13570 PF07724 AAA domain (Cdc48 subfamily) RD05_RS13570 PF00004 ATPase family associated with various cellular activities (AAA) RD05_RS13570 PF02861 Clp amino terminal domain, pathogenicity island component RD05_RS13575 PF00027 Cyclic nucleotide-binding domain RD05_RS13575 PF13545 Crp-like helix-turn-helix domain RD05_RS13590 PF00293 NUDIX domain RD05_RS13595 PF12843 Putative quorum-sensing-regulated virulence factor RD05_RS13605 PF04542 Sigma-70 region 2 RD05_RS13605 PF08281 Sigma-70, region 4 RD05_RS13605 PF12680 SnoaL-like domain RD05_RS13610 PF02627 Carboxymuconolactone decarboxylase family RD05_RS13640 PF00155 Aminotransferase class I and II RD05_RS13645 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS13650 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS13655 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS13660 PF00005 ABC transporter RD05_RS13680 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD05_RS13705 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS13710 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD05_RS13710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD05_RS13715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS13715 PF03466 LysR substrate binding domain RD05_RS13725 PF02016 LD-carboxypeptidase N-terminal domain RD05_RS13725 PF17676 LD-carboxypeptidase C-terminal domain RD05_RS13740 PF07690 Major Facilitator Superfamily RD05_RS13750 PF03466 LysR substrate binding domain RD05_RS13750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS13755 PF13378 Enolase C-terminal domain-like RD05_RS13755 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RD05_RS13760 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS13780 PF02567 Phenazine biosynthesis-like protein RD05_RS13790 PF03239 Iron permease FTR1 family RD05_RS13800 PF10634 Fe2+ transport protein RD05_RS13805 PF05233 PHB accumulation regulatory domain RD05_RS13805 PF07879 PHB/PHA accumulation regulator DNA-binding domain RD05_RS13810 PF00106 short chain dehydrogenase RD05_RS13815 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RD05_RS13820 PF02578 Multi-copper polyphenol oxidoreductase laccase RD05_RS13825 PF00849 RNA pseudouridylate synthase RD05_RS13825 PF01479 S4 domain RD05_RS13830 PF13525 Outer membrane lipoprotein RD05_RS13835 PF04851 Type III restriction enzyme, res subunit RD05_RS13835 PF13307 Helicase C-terminal domain RD05_RS13840 PF17674 HHH domain RD05_RS13840 PF16921 Tex protein YqgF-like domain RD05_RS13840 PF09371 Tex-like protein N-terminal domain RD05_RS13840 PF00575 S1 RNA binding domain RD05_RS13845 PF00579 tRNA synthetases class I (W and Y) RD05_RS13865 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS13875 PF03466 LysR substrate binding domain RD05_RS13875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS13885 PF03969 AFG1-like ATPase RD05_RS13890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD05_RS13890 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS13895 PF02817 e3 binding domain RD05_RS13895 PF00364 Biotin-requiring enzyme RD05_RS13895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD05_RS13900 PF16078 2-oxoglutarate dehydrogenase N-terminus RD05_RS13900 PF16870 2-oxoglutarate dehydrogenase C-terminal RD05_RS13900 PF00676 Dehydrogenase E1 component RD05_RS13900 PF02779 Transketolase, pyrimidine binding domain RD05_RS13905 PF03169 OPT oligopeptide transporter protein RD05_RS13910 PF03169 OPT oligopeptide transporter protein RD05_RS13915 PF01037 Lrp/AsnC ligand binding domain RD05_RS13920 PF00456 Transketolase, thiamine diphosphate binding domain RD05_RS13920 PF17831 Pyruvate dehydrogenase E1 component middle domain RD05_RS13925 PF00390 Malic enzyme, N-terminal domain RD05_RS13925 PF03949 Malic enzyme, NAD binding domain RD05_RS13925 PF01515 Phosphate acetyl/butaryl transferase RD05_RS13930 PF16970 Type-1 fimbrial protein, A RD05_RS13940 PF03449 Transcription elongation factor, N-terminal RD05_RS13940 PF01272 Transcription elongation factor, GreA/GreB, C-term RD05_RS13945 PF02811 PHP domain RD05_RS13980 PF01026 TatD related DNase RD05_RS13985 PF00005 ABC transporter RD05_RS13990 PF12704 MacB-like periplasmic core domain RD05_RS13990 PF02687 FtsX-like permease family RD05_RS14000 PF01368 DHH family RD05_RS14000 PF02272 DHHA1 domain RD05_RS14000 PF17768 RecJ OB domain RD05_RS14005 PF00472 RF-1 domain RD05_RS14005 PF03462 PCRF domain RD05_RS14010 PF00106 short chain dehydrogenase RD05_RS14015 PF01336 OB-fold nucleic acid binding domain RD05_RS14015 PF00152 tRNA synthetases class II (D, K and N) RD05_RS14025 PF00440 Bacterial regulatory proteins, tetR family RD05_RS14025 PF17932 Tetracyclin repressor-like, C-terminal domain RD05_RS14030 PF00501 AMP-binding enzyme RD05_RS14035 PF00005 ABC transporter RD05_RS14055 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD05_RS14055 PF00005 ABC transporter RD05_RS14065 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS14065 PF07689 KaiB domain RD05_RS14065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS14070 PF00486 Transcriptional regulatory protein, C terminal RD05_RS14070 PF00072 Response regulator receiver domain RD05_RS14075 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RD05_RS14085 PF03631 Virulence factor BrkB RD05_RS14100 PF01207 Dihydrouridine synthase (Dus) RD05_RS14105 PF01636 Phosphotransferase enzyme family RD05_RS14125 PF01985 CRS1 / YhbY (CRM) domain RD05_RS14130 PF01728 FtsJ-like methyltransferase RD05_RS14135 PF00004 ATPase family associated with various cellular activities (AAA) RD05_RS14135 PF01434 Peptidase family M41 RD05_RS14135 PF06480 FtsH Extracellular RD05_RS14135 PF17862 AAA+ lid domain RD05_RS14140 PF00809 Pterin binding enzyme RD05_RS14145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD05_RS14145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD05_RS14145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD05_RS14145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD05_RS14155 PF02541 Ppx/GppA phosphatase family RD05_RS14160 PF17941 Polyphosphate kinase C-terminal domain 1 RD05_RS14160 PF13090 Polyphosphate kinase C-terminal domain 2 RD05_RS14160 PF13089 Polyphosphate kinase N-terminal domain RD05_RS14160 PF02503 Polyphosphate kinase middle domain RD05_RS14165 PF12849 PBP superfamily domain RD05_RS14170 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS14175 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS14180 PF00005 ABC transporter RD05_RS14195 PF01337 Barstar (barnase inhibitor) RD05_RS14205 PF00390 Malic enzyme, N-terminal domain RD05_RS14205 PF01515 Phosphate acetyl/butaryl transferase RD05_RS14205 PF03949 Malic enzyme, NAD binding domain RD05_RS14215 PF00155 Aminotransferase class I and II RD05_RS14220 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RD05_RS14220 PF01464 Transglycosylase SLT domain RD05_RS14225 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RD05_RS14250 PF10414 Sirohaem synthase dimerisation region RD05_RS14250 PF14824 Sirohaem biosynthesis protein central RD05_RS14250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD05_RS14255 PF03212 Pertactin RD05_RS14255 PF03797 Autotransporter beta-domain RD05_RS14265 PF03212 Pertactin RD05_RS14265 PF03797 Autotransporter beta-domain RD05_RS14280 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RD05_RS14285 PF02547 Queuosine biosynthesis protein RD05_RS14290 PF01702 Queuine tRNA-ribosyltransferase RD05_RS14295 PF02699 Preprotein translocase subunit RD05_RS14300 PF02355 Protein export membrane protein RD05_RS14300 PF13721 SecD export protein N-terminal TM region RD05_RS14300 PF07549 SecD/SecF GG Motif RD05_RS14305 PF07549 SecD/SecF GG Motif RD05_RS14305 PF02355 Protein export membrane protein RD05_RS14320 PF01938 TRAM domain RD05_RS14320 PF00919 Uncharacterized protein family UPF0004 RD05_RS14320 PF04055 Radical SAM superfamily RD05_RS14325 PF02562 PhoH-like protein RD05_RS14330 PF02130 Uncharacterized protein family UPF0054 RD05_RS14335 PF03471 Transporter associated domain RD05_RS14335 PF00571 CBS domain RD05_RS14340 PF00795 Carbon-nitrogen hydrolase RD05_RS14345 PF00248 Aldo/keto reductase family RD05_RS14370 PF04344 Chemotaxis phosphatase, CheZ RD05_RS14375 PF00072 Response regulator receiver domain RD05_RS14380 PF01339 CheB methylesterase RD05_RS14380 PF00072 Response regulator receiver domain RD05_RS14390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD05_RS14390 PF02203 Tar ligand binding domain homologue RD05_RS14390 PF00672 HAMP domain RD05_RS14395 PF01584 CheW-like domain RD05_RS14400 PF01627 Hpt domain RD05_RS14400 PF01584 CheW-like domain RD05_RS14400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS14400 PF02895 Signal transducing histidine kinase, homodimeric domain RD05_RS14400 PF09078 CheY binding RD05_RS14405 PF00072 Response regulator receiver domain RD05_RS14410 PF13677 Membrane MotB of proton-channel complex MotA/MotB RD05_RS14410 PF00691 OmpA family RD05_RS14415 PF01618 MotA/TolQ/ExbB proton channel family RD05_RS14420 PF05280 Flagellar transcriptional activator (FlhC) RD05_RS14425 PF05247 Flagellar transcriptional activator (FlhD) RD05_RS14430 PF04545 Sigma-70, region 4 RD05_RS14430 PF04542 Sigma-70 region 2 RD05_RS14430 PF04539 Sigma-70 region 3 RD05_RS14440 PF01176 Translation initiation factor 1A / IF-1 RD05_RS14450 PF01476 LysM domain RD05_RS14450 PF08525 Opacity-associated protein A N-terminal motif RD05_RS14450 PF01551 Peptidase family M23 RD05_RS14460 PF00994 Probable molybdopterin binding domain RD05_RS14470 PF03591 AzlC protein RD05_RS14480 PF00226 DnaJ domain RD05_RS14480 PF01556 DnaJ C terminal domain RD05_RS14500 PF02798 Glutathione S-transferase, N-terminal domain RD05_RS14500 PF14834 Glutathione S-transferase, C-terminal domain RD05_RS14505 PF11339 Protein of unknown function (DUF3141) RD05_RS14510 PF01515 Phosphate acetyl/butaryl transferase RD05_RS14515 PF00871 Acetokinase family RD05_RS14525 PF00162 Phosphoglycerate kinase RD05_RS14530 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD05_RS14530 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RD05_RS14535 PF00456 Transketolase, thiamine diphosphate binding domain RD05_RS14535 PF02779 Transketolase, pyrimidine binding domain RD05_RS14535 PF02780 Transketolase, C-terminal domain RD05_RS14540 PF04452 RNA methyltransferase RD05_RS14555 PF00669 Bacterial flagellin N-terminal helical region RD05_RS14555 PF00700 Bacterial flagellin C-terminal helical region RD05_RS14560 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS14560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD05_RS14565 PF02817 e3 binding domain RD05_RS14565 PF00364 Biotin-requiring enzyme RD05_RS14565 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD05_RS14570 PF17831 Pyruvate dehydrogenase E1 component middle domain RD05_RS14570 PF00456 Transketolase, thiamine diphosphate binding domain RD05_RS14575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS14575 PF00989 PAS fold RD05_RS14575 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS14580 PF00072 Response regulator receiver domain RD05_RS14580 PF00196 Bacterial regulatory proteins, luxR family RD05_RS14585 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD05_RS14585 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD05_RS14590 PF01432 Peptidase family M3 RD05_RS14595 PF02630 SCO1/SenC RD05_RS14605 PF02321 Outer membrane efflux protein RD05_RS14610 PF00873 AcrB/AcrD/AcrF family RD05_RS14615 PF00529 HlyD membrane-fusion protein of T1SS RD05_RS14615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD05_RS14620 PF03466 LysR substrate binding domain RD05_RS14620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS14625 PF01479 S4 domain RD05_RS14625 PF00849 RNA pseudouridylate synthase RD05_RS14630 PF04345 Chorismate lyase RD05_RS14635 PF07690 Major Facilitator Superfamily RD05_RS14645 PF00248 Aldo/keto reductase family RD05_RS14655 PF00293 NUDIX domain RD05_RS14660 PF01245 Ribosomal protein L19 RD05_RS14675 PF04055 Radical SAM superfamily RD05_RS14685 PF01507 Phosphoadenosine phosphosulfate reductase family RD05_RS14690 PF01507 Phosphoadenosine phosphosulfate reductase family RD05_RS14695 PF12857 TOBE-like domain RD05_RS14695 PF00005 ABC transporter RD05_RS14695 PF17850 CysA C-terminal regulatory domain RD05_RS14700 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS14705 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS14720 PF10417 C-terminal domain of 1-Cys peroxiredoxin RD05_RS14720 PF00578 AhpC/TSA family RD05_RS14725 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS14725 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD05_RS14725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS14725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS14730 PF00766 Electron transfer flavoprotein FAD-binding domain RD05_RS14730 PF01012 Electron transfer flavoprotein domain RD05_RS14735 PF01012 Electron transfer flavoprotein domain RD05_RS14740 PF00850 Histone deacetylase domain RD05_RS14745 PF13406 Transglycosylase SLT domain RD05_RS14750 PF00291 Pyridoxal-phosphate dependent enzyme RD05_RS14760 PF10531 SLBB domain RD05_RS14765 PF01370 NAD dependent epimerase/dehydratase family RD05_RS14770 PF00294 pfkB family carbohydrate kinase RD05_RS14775 PF18073 Rubredoxin metal binding domain RD05_RS14785 PF00216 Bacterial DNA-binding protein RD05_RS14790 PF00575 S1 RNA binding domain RD05_RS14795 PF02224 Cytidylate kinase RD05_RS14800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD05_RS14805 PF02153 Prephenate dehydrogenase RD05_RS14810 PF01842 ACT domain RD05_RS14810 PF01817 Chorismate mutase type II RD05_RS14810 PF00800 Prephenate dehydratase RD05_RS14815 PF00266 Aminotransferase class-V RD05_RS14820 PF03989 DNA gyrase C-terminal domain, beta-propeller RD05_RS14820 PF00521 DNA gyrase/topoisomerase IV, subunit A RD05_RS14825 PF00691 OmpA family RD05_RS14835 PF13419 Haloacid dehalogenase-like hydrolase RD05_RS14840 PF07690 Major Facilitator Superfamily RD05_RS14865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS14865 PF03466 LysR substrate binding domain RD05_RS14870 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS14880 PF11798 IMS family HHH motif RD05_RS14880 PF11799 impB/mucB/samB family C-terminal domain RD05_RS14880 PF00817 impB/mucB/samB family RD05_RS14890 PF00326 Prolyl oligopeptidase family RD05_RS14895 PF00905 Penicillin binding protein transpeptidase domain RD05_RS14895 PF17092 Penicillin-binding protein OB-like domain RD05_RS14895 PF00912 Transglycosylase RD05_RS14900 PF00149 Calcineurin-like phosphoesterase RD05_RS14915 PF00248 Aldo/keto reductase family RD05_RS14920 PF00248 Aldo/keto reductase family RD05_RS14925 PF00005 ABC transporter RD05_RS14925 PF00664 ABC transporter transmembrane region RD05_RS14970 PF01039 Carboxyl transferase domain RD05_RS14975 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD05_RS14975 PF00289 Biotin carboxylase, N-terminal domain RD05_RS14975 PF02785 Biotin carboxylase C-terminal domain RD05_RS14980 PF00392 Bacterial regulatory proteins, gntR family RD05_RS14980 PF07702 UTRA domain RD05_RS15000 PF00682 HMGL-like RD05_RS15000 PF02436 Conserved carboxylase domain RD05_RS15000 PF00364 Biotin-requiring enzyme RD05_RS15005 PF00364 Biotin-requiring enzyme RD05_RS15015 PF01966 HD domain RD05_RS15035 PF07238 PilZ domain RD05_RS15035 PF07317 Flagellar regulator YcgR RD05_RS15050 PF05724 Thiopurine S-methyltransferase (TPMT) RD05_RS15055 PF00664 ABC transporter transmembrane region RD05_RS15055 PF00005 ABC transporter RD05_RS15070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD05_RS15070 PF00205 Thiamine pyrophosphate enzyme, central domain RD05_RS15070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD05_RS15075 PF10369 Small subunit of acetolactate synthase RD05_RS15080 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RD05_RS15080 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RD05_RS15085 PF01066 CDP-alcohol phosphatidyltransferase RD05_RS15095 PF00312 Ribosomal protein S15 RD05_RS15100 PF01138 3' exoribonuclease family, domain 1 RD05_RS15100 PF03725 3' exoribonuclease family, domain 2 RD05_RS15100 PF00013 KH domain RD05_RS15100 PF00575 S1 RNA binding domain RD05_RS15100 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RD05_RS15115 PF00291 Pyridoxal-phosphate dependent enzyme RD05_RS15115 PF13291 ACT domain RD05_RS15130 PF16197 Ketoacyl-synthetase C-terminal extension RD05_RS15130 PF00109 Beta-ketoacyl synthase, N-terminal domain RD05_RS15130 PF08240 Alcohol dehydrogenase GroES-like domain RD05_RS15130 PF00698 Acyl transferase domain RD05_RS15130 PF02801 Beta-ketoacyl synthase, C-terminal domain RD05_RS15130 PF08659 KR domain RD05_RS15130 PF00550 Phosphopantetheine attachment site RD05_RS15130 PF14765 Polyketide synthase dehydratase RD05_RS15130 PF08990 Erythronolide synthase docking RD05_RS15135 PF00121 Triosephosphate isomerase RD05_RS15140 PF03840 Preprotein translocase SecG subunit RD05_RS15150 PF02028 BCCT, betaine/carnitine/choline family transporter RD05_RS15160 PF05034 Methylaspartate ammonia-lyase N-terminus RD05_RS15160 PF07476 Methylaspartate ammonia-lyase C-terminus RD05_RS15165 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS15180 PF00206 Lyase RD05_RS15180 PF14698 Argininosuccinate lyase C-terminal RD05_RS15185 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS15200 PF03466 LysR substrate binding domain RD05_RS15200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS15205 PF01053 Cys/Met metabolism PLP-dependent enzyme RD05_RS15210 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD05_RS15225 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS15230 PF01266 FAD dependent oxidoreductase RD05_RS15240 PF05378 Hydantoinase/oxoprolinase N-terminal region RD05_RS15240 PF01968 Hydantoinase/oxoprolinase RD05_RS15250 PF00127 Copper binding proteins, plastocyanin/azurin family RD05_RS15260 PF02321 Outer membrane efflux protein RD05_RS15265 PF00873 AcrB/AcrD/AcrF family RD05_RS15270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD05_RS15275 PF01638 HxlR-like helix-turn-helix RD05_RS15285 PF02028 BCCT, betaine/carnitine/choline family transporter RD05_RS15290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS15290 PF03466 LysR substrate binding domain RD05_RS15295 PF00781 Diacylglycerol kinase catalytic domain RD05_RS15305 PF01569 PAP2 superfamily RD05_RS15330 PF13609 Gram-negative porin RD05_RS15335 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RD05_RS15340 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RD05_RS15345 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RD05_RS15350 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RD05_RS15360 PF10531 SLBB domain RD05_RS15360 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RD05_RS15360 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RD05_RS15365 PF00384 Molybdopterin oxidoreductase RD05_RS15365 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RD05_RS15365 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RD05_RS15370 PF00146 NADH dehydrogenase RD05_RS15375 PF12838 4Fe-4S dicluster domain RD05_RS15380 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RD05_RS15385 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD05_RS15390 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD05_RS15390 PF00361 Proton-conducting membrane transporter RD05_RS15395 PF00361 Proton-conducting membrane transporter RD05_RS15395 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus RD05_RS15400 PF00361 Proton-conducting membrane transporter RD05_RS15410 PF07715 TonB-dependent Receptor Plug Domain RD05_RS15410 PF00593 TonB dependent receptor RD05_RS15415 PF00593 TonB dependent receptor RD05_RS15415 PF07715 TonB-dependent Receptor Plug Domain RD05_RS15430 PF00205 Thiamine pyrophosphate enzyme, central domain RD05_RS15430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD05_RS15430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD05_RS15435 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS15440 PF03466 LysR substrate binding domain RD05_RS15440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS15450 PF00271 Helicase conserved C-terminal domain RD05_RS15450 PF00270 DEAD/DEAH box helicase RD05_RS15450 PF03461 TRCF domain RD05_RS15450 PF02559 CarD-like/TRCF domain RD05_RS15450 PF17757 UvrB interaction domain RD05_RS15455 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RD05_RS15460 PF02542 YgbB family RD05_RS15470 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RD05_RS15475 PF11940 Domain of unknown function (DUF3458) Ig-like fold RD05_RS15475 PF01433 Peptidase family M1 domain RD05_RS15475 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RD05_RS15495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD05_RS15495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD05_RS15495 PF00205 Thiamine pyrophosphate enzyme, central domain RD05_RS15505 PF09084 NMT1/THI5 like RD05_RS15510 PF00005 ABC transporter RD05_RS15515 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS15525 PF00501 AMP-binding enzyme RD05_RS15525 PF13193 AMP-binding enzyme C-terminal domain RD05_RS15530 PF00107 Zinc-binding dehydrogenase RD05_RS15530 PF08240 Alcohol dehydrogenase GroES-like domain RD05_RS15535 PF00392 Bacterial regulatory proteins, gntR family RD05_RS15535 PF07729 FCD domain RD05_RS15545 PF07729 FCD domain RD05_RS15545 PF00392 Bacterial regulatory proteins, gntR family RD05_RS15550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD05_RS15550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD05_RS15550 PF00205 Thiamine pyrophosphate enzyme, central domain RD05_RS15570 PF01063 Amino-transferase class IV RD05_RS15575 PF00005 ABC transporter RD05_RS15580 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS15590 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS15595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS15595 PF03466 LysR substrate binding domain RD05_RS15600 PF02321 Outer membrane efflux protein RD05_RS15605 PF13533 Biotin-lipoyl like RD05_RS15610 PF00005 ABC transporter RD05_RS15610 PF03412 Peptidase C39 family RD05_RS15610 PF00664 ABC transporter transmembrane region RD05_RS15615 PF02382 N-terminal domain in RTX protein RD05_RS15615 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RD05_RS15615 PF03497 Anthrax toxin LF subunit RD05_RS15625 PF02794 RTX toxin acyltransferase family RD05_RS15630 PF00171 Aldehyde dehydrogenase family RD05_RS15640 PF01266 FAD dependent oxidoreductase RD05_RS15645 PF02538 Hydantoinase B/oxoprolinase RD05_RS15650 PF01968 Hydantoinase/oxoprolinase RD05_RS15650 PF05378 Hydantoinase/oxoprolinase N-terminal region RD05_RS15655 PF03466 LysR substrate binding domain RD05_RS15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS15665 PF00348 Polyprenyl synthetase RD05_RS15675 PF00829 Ribosomal prokaryotic L21 protein RD05_RS15680 PF01016 Ribosomal L27 protein RD05_RS15685 PF01018 GTP1/OBG RD05_RS15685 PF01926 50S ribosome-binding GTPase RD05_RS15690 PF01472 PUA domain RD05_RS15690 PF00696 Amino acid kinase family RD05_RS15730 PF04773 FecR protein RD05_RS15730 PF16220 Domain of unknown function (DUF4880) RD05_RS15735 PF00593 TonB dependent receptor RD05_RS15735 PF07715 TonB-dependent Receptor Plug Domain RD05_RS15740 PF04264 YceI-like domain RD05_RS15755 PF16653 Saccharopine dehydrogenase C-terminal domain RD05_RS15755 PF03435 Saccharopine dehydrogenase NADP binding domain RD05_RS15760 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD05_RS15780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS15785 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS15790 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS15795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS15795 PF00005 ABC transporter RD05_RS15800 PF01425 Amidase RD05_RS15805 PF00202 Aminotransferase class-III RD05_RS15825 PF00691 OmpA family RD05_RS15825 PF04972 BON domain RD05_RS15830 PF01329 Pterin 4 alpha carbinolamine dehydratase RD05_RS15840 PF00483 Nucleotidyl transferase RD05_RS15845 PF01636 Phosphotransferase enzyme family RD05_RS15850 PF04453 LPS transport system D RD05_RS15855 PF09312 SurA N-terminal domain RD05_RS15855 PF00639 PPIC-type PPIASE domain RD05_RS15860 PF00398 Ribosomal RNA adenine dimethylase RD05_RS15865 PF02595 Glycerate kinase family RD05_RS15870 PF02887 Pyruvate kinase, alpha/beta domain RD05_RS15870 PF00224 Pyruvate kinase, barrel domain RD05_RS15875 PF07670 Nucleoside recognition RD05_RS15880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS15880 PF09317 Domain of unknown function (DUF1974) RD05_RS15880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS15880 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS15895 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS15900 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS15905 PF00005 ABC transporter RD05_RS15910 PF01032 FecCD transport family RD05_RS15920 PF00691 OmpA family RD05_RS15925 PF04052 TolB amino-terminal domain RD05_RS15925 PF07676 WD40-like Beta Propeller Repeat RD05_RS15935 PF02472 Biopolymer transport protein ExbD/TolR RD05_RS15940 PF01618 MotA/TolQ/ExbB proton channel family RD05_RS15945 PF03061 Thioesterase superfamily RD05_RS15950 PF03129 Anticodon binding domain RD05_RS15950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD05_RS15950 PF04073 Aminoacyl-tRNA editing domain RD05_RS15955 PF00293 NUDIX domain RD05_RS15960 PF00072 Response regulator receiver domain RD05_RS15960 PF00486 Transcriptional regulatory protein, C terminal RD05_RS15970 PF02586 SOS response associated peptidase (SRAP) RD05_RS16035 PF06791 Prophage tail length tape measure protein RD05_RS16175 PF03180 NLPA lipoprotein RD05_RS16185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RD05_RS16185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RD05_RS16190 PF00005 ABC transporter RD05_RS16195 PF00005 ABC transporter RD05_RS16195 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD05_RS16200 PF02653 Branched-chain amino acid transport system / permease component RD05_RS16205 PF02653 Branched-chain amino acid transport system / permease component RD05_RS16210 PF13458 Periplasmic binding protein RD05_RS16215 PF01425 Amidase RD05_RS16220 PF00484 Carbonic anhydrase RD05_RS16235 PF16124 RecQ zinc-binding RD05_RS16235 PF00270 DEAD/DEAH box helicase RD05_RS16235 PF00271 Helicase conserved C-terminal domain RD05_RS16235 PF09382 RQC domain RD05_RS16235 PF00570 HRDC domain RD05_RS16240 PF17864 RuvB AAA lid domain RD05_RS16240 PF05496 Holliday junction DNA helicase RuvB P-loop domain RD05_RS16240 PF05491 RuvB C-terminal winged helix domain RD05_RS16245 PF00291 Pyridoxal-phosphate dependent enzyme RD05_RS16250 PF01370 NAD dependent epimerase/dehydratase family RD05_RS16255 PF07499 RuvA, C-terminal domain RD05_RS16255 PF01330 RuvA N terminal domain RD05_RS16260 PF02075 Crossover junction endodeoxyribonuclease RuvC RD05_RS16265 PF02142 MGS-like domain RD05_RS16265 PF01808 AICARFT/IMPCHase bienzyme RD05_RS16270 PF02954 Bacterial regulatory protein, Fis family RD05_RS16275 PF01207 Dihydrouridine synthase (Dus) RD05_RS16280 PF01494 FAD binding domain RD05_RS16290 PF05195 Aminopeptidase P, N-terminal domain RD05_RS16290 PF00557 Metallopeptidase family M24 RD05_RS16315 PF13609 Gram-negative porin RD05_RS16325 PF00483 Nucleotidyl transferase RD05_RS16330 PF13181 Tetratricopeptide repeat RD05_RS16330 PF01435 Peptidase family M48 RD05_RS16335 PF00561 alpha/beta hydrolase fold RD05_RS16350 PF01063 Amino-transferase class IV RD05_RS16365 PF00270 DEAD/DEAH box helicase RD05_RS16365 PF00271 Helicase conserved C-terminal domain RD05_RS16385 PF18146 Damage-inducible protein CinA KH domain RD05_RS16385 PF00994 Probable molybdopterin binding domain RD05_RS16385 PF02464 Competence-damaged protein RD05_RS16390 PF01614 Bacterial transcriptional regulator RD05_RS16390 PF09339 IclR helix-turn-helix domain RD05_RS16395 PF05785 Rho-activating domain of cytotoxic necrotizing factor RD05_RS16395 PF18807 Tripartite Tc toxins repeat RD05_RS16400 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS16410 PF01180 Dihydroorotate dehydrogenase RD05_RS16415 PF04377 Arginine-tRNA-protein transferase, C terminus RD05_RS16415 PF04376 Arginine-tRNA-protein transferase, N terminus RD05_RS16420 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RD05_RS16430 PF03466 LysR substrate binding domain RD05_RS16430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS16470 PF00392 Bacterial regulatory proteins, gntR family RD05_RS16470 PF07729 FCD domain RD05_RS16475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD05_RS16475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD05_RS16475 PF00205 Thiamine pyrophosphate enzyme, central domain RD05_RS16480 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS16485 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD05_RS16490 PF03949 Malic enzyme, NAD binding domain RD05_RS16490 PF00390 Malic enzyme, N-terminal domain RD05_RS16490 PF01515 Phosphate acetyl/butaryl transferase RD05_RS16500 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS16505 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS16510 PF00005 ABC transporter RD05_RS16510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS16525 PF03466 LysR substrate binding domain RD05_RS16525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS16540 PF01022 Bacterial regulatory protein, arsR family RD05_RS16555 PF03594 Benzoate membrane transport protein RD05_RS16560 PF00037 4Fe-4S binding domain RD05_RS16565 PF01467 Cytidylyltransferase-like RD05_RS16575 PF00448 SRP54-type protein, GTPase domain RD05_RS16575 PF02881 SRP54-type protein, helical bundle domain RD05_RS16590 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS16595 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS16600 PF00005 ABC transporter RD05_RS16610 PF00005 ABC transporter RD05_RS16630 PF00925 GTP cyclohydrolase II RD05_RS16630 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD05_RS16635 PF00885 6,7-dimethyl-8-ribityllumazine synthase RD05_RS16640 PF01029 NusB family RD05_RS16645 PF02769 AIR synthase related protein, C-terminal domain RD05_RS16645 PF00586 AIR synthase related protein, N-terminal domain RD05_RS16650 PF04608 Phosphatidylglycerophosphatase A RD05_RS16655 PF00994 Probable molybdopterin binding domain RD05_RS16655 PF18146 Damage-inducible protein CinA KH domain RD05_RS16655 PF02464 Competence-damaged protein RD05_RS16660 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RD05_RS16665 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS16670 PF01219 Prokaryotic diacylglycerol kinase RD05_RS16675 PF03631 Virulence factor BrkB RD05_RS16680 PF03797 Autotransporter beta-domain RD05_RS16680 PF03212 Pertactin RD05_RS16685 PF00118 TCP-1/cpn60 chaperonin family RD05_RS16690 PF00166 Chaperonin 10 Kd subunit RD05_RS16710 PF00890 FAD binding domain RD05_RS16720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS16720 PF03466 LysR substrate binding domain RD05_RS16725 PF00890 FAD binding domain RD05_RS16745 PF00990 Diguanylate cyclase, GGDEF domain RD05_RS16750 PF00072 Response regulator receiver domain RD05_RS16780 PF12867 DinB superfamily RD05_RS16780 PF03781 Sulfatase-modifying factor enzyme 1 RD05_RS16785 PF10017 Histidine-specific methyltransferase, SAM-dependent RD05_RS16795 PF13396 Phospholipase_D-nuclease N-terminal RD05_RS16795 PF13091 PLD-like domain RD05_RS16805 PF01645 Conserved region in glutamate synthase RD05_RS16810 PF04143 Sulphur transport RD05_RS16815 PF03547 Membrane transport protein RD05_RS16820 PF13673 Acetyltransferase (GNAT) domain RD05_RS16840 PF08461 Ribonuclease R winged-helix domain RD05_RS16840 PF00575 S1 RNA binding domain RD05_RS16840 PF00773 RNB domain RD05_RS16840 PF17876 Cold shock domain RD05_RS16840 PF08206 Ribonuclease B OB domain RD05_RS16845 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD05_RS16845 PF00588 SpoU rRNA Methylase family RD05_RS16850 PF01053 Cys/Met metabolism PLP-dependent enzyme RD05_RS16855 PF13640 2OG-Fe(II) oxygenase superfamily RD05_RS16855 PF18331 PKHD-type hydroxylase C-terminal domain RD05_RS16860 PF00216 Bacterial DNA-binding protein RD05_RS16875 PF01618 MotA/TolQ/ExbB proton channel family RD05_RS16880 PF02472 Biopolymer transport protein ExbD/TolR RD05_RS16885 PF00072 Response regulator receiver domain RD05_RS16885 PF00486 Transcriptional regulatory protein, C terminal RD05_RS16890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS16890 PF08521 Two-component sensor kinase N-terminal RD05_RS16890 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS16895 PF02705 K+ potassium transporter RD05_RS16900 PF00764 Arginosuccinate synthase RD05_RS16905 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD05_RS16905 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD05_RS16910 PF00202 Aminotransferase class-III RD05_RS16920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS16920 PF03466 LysR substrate binding domain RD05_RS16930 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD05_RS16930 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD05_RS16935 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS16950 PF07729 FCD domain RD05_RS16950 PF00392 Bacterial regulatory proteins, gntR family RD05_RS16960 PF07690 Major Facilitator Superfamily RD05_RS16970 PF02627 Carboxymuconolactone decarboxylase family RD05_RS16975 PF00578 AhpC/TSA family RD05_RS16980 PF00672 HAMP domain RD05_RS16980 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS16980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS16990 PF00486 Transcriptional regulatory protein, C terminal RD05_RS16990 PF00072 Response regulator receiver domain RD05_RS16995 PF00814 Glycoprotease family RD05_RS17000 PF03167 Uracil DNA glycosylase superfamily RD05_RS17005 PF07690 Major Facilitator Superfamily RD05_RS17010 PF06470 SMC proteins Flexible Hinge Domain RD05_RS17010 PF02463 RecF/RecN/SMC N terminal domain RD05_RS17020 PF12826 Helix-hairpin-helix motif RD05_RS17020 PF03120 NAD-dependent DNA ligase OB-fold domain RD05_RS17020 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RD05_RS17020 PF01653 NAD-dependent DNA ligase adenylation domain RD05_RS17020 PF00533 BRCA1 C Terminus (BRCT) domain RD05_RS17035 PF04279 Intracellular septation protein A RD05_RS17040 PF01641 SelR domain RD05_RS17045 PF00005 ABC transporter RD05_RS17050 PF02361 Cobalt transport protein RD05_RS17055 PF02632 BioY family RD05_RS17070 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD05_RS17070 PF00005 ABC transporter RD05_RS17075 PF01063 Amino-transferase class IV RD05_RS17090 PF02653 Branched-chain amino acid transport system / permease component RD05_RS17100 PF00005 ABC transporter RD05_RS17105 PF00005 ABC transporter RD05_RS17105 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD05_RS17110 PF00730 HhH-GPD superfamily base excision DNA repair protein RD05_RS17110 PF10576 Iron-sulfur binding domain of endonuclease III RD05_RS17110 PF00633 Helix-hairpin-helix motif RD05_RS17115 PF04060 Putative Fe-S cluster RD05_RS17125 PF00970 Oxidoreductase FAD-binding domain RD05_RS17125 PF00175 Oxidoreductase NAD-binding domain RD05_RS17130 PF00037 4Fe-4S binding domain RD05_RS17130 PF11953 Domain of unknown function (DUF3470) RD05_RS17135 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RD05_RS17135 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RD05_RS17140 PF01042 Endoribonuclease L-PSP RD05_RS17150 PF06167 Glucose-regulated metallo-peptidase M90 RD05_RS17155 PF02824 TGS domain RD05_RS17155 PF13291 ACT domain RD05_RS17155 PF04607 Region found in RelA / SpoT proteins RD05_RS17160 PF01546 Peptidase family M20/M25/M40 RD05_RS17160 PF07687 Peptidase dimerisation domain RD05_RS17165 PF00291 Pyridoxal-phosphate dependent enzyme RD05_RS17170 PF00290 Tryptophan synthase alpha chain RD05_RS17175 PF17848 Acetyl-coA carboxylase zinc finger domain RD05_RS17175 PF01039 Carboxyl transferase domain RD05_RS17180 PF09411 Lipid A 3-O-deacylase (PagL) RD05_RS17195 PF10150 Ribonuclease E/G family RD05_RS17195 PF00575 S1 RNA binding domain RD05_RS17195 PF12111 Polyribonucleotide phosphorylase C terminal RD05_RS17200 PF00849 RNA pseudouridylate synthase RD05_RS17200 PF01479 S4 domain RD05_RS17205 PF13419 Haloacid dehalogenase-like hydrolase RD05_RS17210 PF00174 Oxidoreductase molybdopterin binding domain RD05_RS17215 PF01794 Ferric reductase like transmembrane component RD05_RS17225 PF02515 CoA-transferase family III RD05_RS17230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS17230 PF03466 LysR substrate binding domain RD05_RS17240 PF02515 CoA-transferase family III RD05_RS17260 PF03466 LysR substrate binding domain RD05_RS17260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS17265 PF01042 Endoribonuclease L-PSP RD05_RS17270 PF00175 Oxidoreductase NAD-binding domain RD05_RS17270 PF00970 Oxidoreductase FAD-binding domain RD05_RS17270 PF00042 Globin RD05_RS17275 PF02667 Short chain fatty acid transporter RD05_RS17280 PF00171 Aldehyde dehydrogenase family RD05_RS17285 PF07729 FCD domain RD05_RS17285 PF00392 Bacterial regulatory proteins, gntR family RD05_RS17295 PF00313 'Cold-shock' DNA-binding domain RD05_RS17300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS17300 PF03466 LysR substrate binding domain RD05_RS17320 PF00108 Thiolase, N-terminal domain RD05_RS17320 PF02803 Thiolase, C-terminal domain RD05_RS17330 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS17330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS17330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS17335 PF03466 LysR substrate binding domain RD05_RS17335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS17340 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS17345 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS17350 PF02515 CoA-transferase family III RD05_RS17355 PF03471 Transporter associated domain RD05_RS17355 PF03741 Integral membrane protein TerC family RD05_RS17360 PF02308 MgtC family RD05_RS17365 PF14492 Elongation Factor G, domain II RD05_RS17365 PF03144 Elongation factor Tu domain 2 RD05_RS17365 PF00009 Elongation factor Tu GTP binding domain RD05_RS17365 PF00679 Elongation factor G C-terminus RD05_RS17365 PF03764 Elongation factor G, domain IV RD05_RS17370 PF00155 Aminotransferase class I and II RD05_RS17370 PF00392 Bacterial regulatory proteins, gntR family RD05_RS17380 PF00582 Universal stress protein family RD05_RS17385 PF14492 Elongation Factor G, domain II RD05_RS17385 PF00679 Elongation factor G C-terminus RD05_RS17385 PF03144 Elongation factor Tu domain 2 RD05_RS17385 PF00009 Elongation factor Tu GTP binding domain RD05_RS17385 PF03764 Elongation factor G, domain IV RD05_RS17395 PF00873 AcrB/AcrD/AcrF family RD05_RS17400 PF00929 Exonuclease RD05_RS17415 PF02667 Short chain fatty acid transporter RD05_RS17425 PF03616 Sodium/glutamate symporter RD05_RS17440 PF00535 Glycosyl transferase family 2 RD05_RS17445 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RD05_RS17460 PF12146 Serine aminopeptidase, S33 RD05_RS17465 PF01810 LysE type translocator RD05_RS17470 PF00892 EamA-like transporter family RD05_RS17480 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS17490 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS17500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS17500 PF03466 LysR substrate binding domain RD05_RS17505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD05_RS17505 PF00205 Thiamine pyrophosphate enzyme, central domain RD05_RS17505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD05_RS17510 PF02515 CoA-transferase family III RD05_RS17515 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS17515 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD05_RS17515 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD05_RS17520 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS17530 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS17535 PF09339 IclR helix-turn-helix domain RD05_RS17555 PF02515 CoA-transferase family III RD05_RS17560 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS17565 PF02515 CoA-transferase family III RD05_RS17585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD05_RS17585 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD05_RS17590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD05_RS17595 PF02021 Uncharacterised protein family UPF0102 RD05_RS17600 PF13580 SIS domain RD05_RS17605 PF04972 BON domain RD05_RS17610 PF00578 AhpC/TSA family RD05_RS17615 PF03180 NLPA lipoprotein RD05_RS17620 PF00696 Amino acid kinase family RD05_RS17630 PF00440 Bacterial regulatory proteins, tetR family RD05_RS17635 PF00939 Sodium:sulfate symporter transmembrane region RD05_RS17640 PF02615 Malate/L-lactate dehydrogenase RD05_RS17645 PF01098 Cell cycle protein RD05_RS17650 PF00905 Penicillin binding protein transpeptidase domain RD05_RS17650 PF03717 Penicillin-binding Protein dimerisation domain RD05_RS17660 PF04085 rod shape-determining protein MreC RD05_RS17670 PF02686 Glu-tRNAGln amidotransferase C subunit RD05_RS17675 PF01425 Amidase RD05_RS17680 PF02934 GatB/GatE catalytic domain RD05_RS17680 PF02637 GatB domain RD05_RS17685 PF00156 Phosphoribosyl transferase domain RD05_RS17690 PF03372 Endonuclease/Exonuclease/phosphatase family RD05_RS17695 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD05_RS17695 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD05_RS17700 PF03458 UPF0126 domain RD05_RS17725 PF00175 Oxidoreductase NAD-binding domain RD05_RS17725 PF00111 2Fe-2S iron-sulfur cluster binding domain RD05_RS17725 PF00970 Oxidoreductase FAD-binding domain RD05_RS17735 PF00171 Aldehyde dehydrogenase family RD05_RS17755 PF07729 FCD domain RD05_RS17755 PF00392 Bacterial regulatory proteins, gntR family RD05_RS17765 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD05_RS17790 PF04542 Sigma-70 region 2 RD05_RS17790 PF08281 Sigma-70, region 4 RD05_RS17795 PF16220 Domain of unknown function (DUF4880) RD05_RS17795 PF04773 FecR protein RD05_RS17800 PF04886 PT repeat RD05_RS17800 PF07715 TonB-dependent Receptor Plug Domain RD05_RS17800 PF00593 TonB dependent receptor RD05_RS17805 PF05171 Haemin-degrading HemS.ChuX domain RD05_RS17810 PF01497 Periplasmic binding protein RD05_RS17815 PF01032 FecCD transport family RD05_RS17820 PF00005 ABC transporter RD05_RS17825 PF04463 Protein of unknown function (DUF523) RD05_RS17830 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA RD05_RS17835 PF13532 2OG-Fe(II) oxygenase superfamily RD05_RS17840 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD05_RS17840 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD05_RS17845 PF00563 EAL domain RD05_RS17845 PF03707 Bacterial signalling protein N terminal repeat RD05_RS17845 PF00990 Diguanylate cyclase, GGDEF domain RD05_RS17870 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS17875 PF12706 Beta-lactamase superfamily domain RD05_RS17890 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS17895 PF00501 AMP-binding enzyme RD05_RS17895 PF13193 AMP-binding enzyme C-terminal domain RD05_RS17910 PF00912 Transglycosylase RD05_RS17920 PF00149 Calcineurin-like phosphoesterase RD05_RS17925 PF01553 Acyltransferase RD05_RS17930 PF01979 Amidohydrolase family RD05_RS17935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD05_RS17935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD05_RS17940 PF03652 Holliday junction resolvase RD05_RS17945 PF02622 Uncharacterized ACR, COG1678 RD05_RS17950 PF00301 Rubredoxin RD05_RS17955 PF08543 Phosphomethylpyrimidine kinase RD05_RS17960 PF02581 Thiamine monophosphate synthase RD05_RS17965 PF00202 Aminotransferase class-III RD05_RS17985 PF13193 AMP-binding enzyme C-terminal domain RD05_RS17985 PF00501 AMP-binding enzyme RD05_RS17990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS17990 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS17990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD05_RS17995 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS18010 PF00005 ABC transporter RD05_RS18015 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD05_RS18015 PF00005 ABC transporter RD05_RS18020 PF11862 Domain of unknown function (DUF3382) RD05_RS18020 PF02653 Branched-chain amino acid transport system / permease component RD05_RS18025 PF02653 Branched-chain amino acid transport system / permease component RD05_RS18035 PF07859 alpha/beta hydrolase fold RD05_RS18065 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RD05_RS18075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS18075 PF03466 LysR substrate binding domain RD05_RS18080 PF07690 Major Facilitator Superfamily RD05_RS18085 PF00920 Dehydratase family RD05_RS18090 PF12833 Helix-turn-helix domain RD05_RS18095 PF08502 LeuA allosteric (dimerisation) domain RD05_RS18095 PF00682 HMGL-like RD05_RS18105 PF07859 alpha/beta hydrolase fold RD05_RS18110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS18115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD05_RS18120 PF04299 Putative FMN-binding domain RD05_RS18130 PF13180 PDZ domain RD05_RS18135 PF01784 NIF3 (NGG1p interacting factor 3) RD05_RS18140 PF01741 Large-conductance mechanosensitive channel, MscL RD05_RS18145 PF00355 Rieske [2Fe-2S] domain RD05_RS18145 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RD05_RS18150 PF00033 Cytochrome b/b6/petB RD05_RS18150 PF00032 Cytochrome b(C-terminal)/b6/petD RD05_RS18155 PF02167 Cytochrome C1 family RD05_RS18160 PF00043 Glutathione S-transferase, C-terminal domain RD05_RS18160 PF02798 Glutathione S-transferase, N-terminal domain RD05_RS18165 PF04386 Stringent starvation protein B RD05_RS18190 PF13609 Gram-negative porin RD05_RS18205 PF00156 Phosphoribosyl transferase domain RD05_RS18210 PF00005 ABC transporter RD05_RS18210 PF00664 ABC transporter transmembrane region RD05_RS18215 PF00005 ABC transporter RD05_RS18215 PF00664 ABC transporter transmembrane region RD05_RS18220 PF08173 Membrane bound YbgT-like protein RD05_RS18225 PF02322 Cytochrome bd terminal oxidase subunit II RD05_RS18230 PF01654 Cytochrome bd terminal oxidase subunit I RD05_RS18250 PF18158 Adaptive response protein AidB N-terminal domain RD05_RS18250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD05_RS18250 PF02770 Acyl-CoA dehydrogenase, middle domain RD05_RS18255 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS18260 PF02515 CoA-transferase family III RD05_RS18270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS18270 PF03466 LysR substrate binding domain RD05_RS18275 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS18285 PF10415 Fumarase C C-terminus RD05_RS18285 PF00206 Lyase RD05_RS18290 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RD05_RS18295 PF01520 N-acetylmuramoyl-L-alanine amidase RD05_RS18295 PF11741 AMIN domain RD05_RS18300 PF09335 SNARE associated Golgi protein RD05_RS18305 PF08676 MutL C terminal dimerisation domain RD05_RS18305 PF01119 DNA mismatch repair protein, C-terminal domain RD05_RS18315 PF02769 AIR synthase related protein, C-terminal domain RD05_RS18315 PF00586 AIR synthase related protein, N-terminal domain RD05_RS18320 PF00308 Bacterial dnaA protein RD05_RS18330 PF12627 Probable RNA and SrmB- binding site of polymerase A RD05_RS18330 PF12626 Polymerase A arginine-rich C-terminus RD05_RS18330 PF01743 Poly A polymerase head domain RD05_RS18335 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RD05_RS18340 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS18350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD05_RS18355 PF03480 Bacterial extracellular solute-binding protein, family 7 RD05_RS18360 PF07702 UTRA domain RD05_RS18360 PF00392 Bacterial regulatory proteins, gntR family RD05_RS18365 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD05_RS18365 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD05_RS18370 PF02627 Carboxymuconolactone decarboxylase family RD05_RS18400 PF09518 HindIII restriction endonuclease RD05_RS18405 PF02355 Protein export membrane protein RD05_RS18405 PF07549 SecD/SecF GG Motif RD05_RS18410 PF13667 ThiC-associated domain RD05_RS18410 PF01964 Radical SAM ThiC family RD05_RS18415 PF00171 Aldehyde dehydrogenase family RD05_RS18420 PF01565 FAD binding domain RD05_RS18420 PF02913 FAD linked oxidases, C-terminal domain RD05_RS18445 PF06508 Queuosine biosynthesis protein QueC RD05_RS18450 PF00311 Phosphoenolpyruvate carboxylase RD05_RS18455 PF00082 Subtilase family RD05_RS18455 PF03797 Autotransporter beta-domain RD05_RS18460 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD05_RS18460 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD05_RS18465 PF02667 Short chain fatty acid transporter RD05_RS18475 PF09339 IclR helix-turn-helix domain RD05_RS18475 PF01614 Bacterial transcriptional regulator RD05_RS18480 PF01144 Coenzyme A transferase RD05_RS18485 PF01144 Coenzyme A transferase RD05_RS18490 PF02426 Muconolactone delta-isomerase RD05_RS18500 PF12146 Serine aminopeptidase, S33 RD05_RS18520 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS18530 PF02515 CoA-transferase family III RD05_RS18535 PF00392 Bacterial regulatory proteins, gntR family RD05_RS18535 PF07729 FCD domain RD05_RS18540 PF02347 Glycine cleavage system P-protein RD05_RS18545 PF01597 Glycine cleavage H-protein RD05_RS18550 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD05_RS18550 PF01571 Aminomethyltransferase folate-binding domain RD05_RS18555 PF02535 ZIP Zinc transporter RD05_RS18560 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD05_RS18560 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD05_RS18575 PF01276 Orn/Lys/Arg decarboxylase, major domain RD05_RS18575 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RD05_RS18575 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RD05_RS18600 PF00692 dUTPase RD05_RS18615 PF10609 NUBPL iron-transfer P-loop NTPase RD05_RS18625 PF09334 tRNA synthetases class I (M) RD05_RS18625 PF01588 Putative tRNA binding domain RD05_RS18630 PF00581 Rhodanese-like domain RD05_RS18630 PF17773 UPF0176 acylphosphatase like domain RD05_RS18655 PF00210 Ferritin-like domain RD05_RS18665 PF16658 Class II release factor RF3, C-terminal domain RD05_RS18665 PF00009 Elongation factor Tu GTP binding domain RD05_RS18665 PF03144 Elongation factor Tu domain 2 RD05_RS18670 PF01810 LysE type translocator RD05_RS18675 PF00271 Helicase conserved C-terminal domain RD05_RS18675 PF00270 DEAD/DEAH box helicase RD05_RS18685 PF04536 TPM domain RD05_RS18690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS18690 PF00005 ABC transporter RD05_RS18705 PF03109 ABC1 family RD05_RS18720 PF01209 ubiE/COQ5 methyltransferase family RD05_RS18725 PF00486 Transcriptional regulatory protein, C terminal RD05_RS18725 PF00072 Response regulator receiver domain RD05_RS18730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS18730 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS18730 PF00989 PAS fold RD05_RS18730 PF11808 Phosphate regulon sensor protein PhoR RD05_RS18735 PF00486 Transcriptional regulatory protein, C terminal RD05_RS18735 PF00072 Response regulator receiver domain RD05_RS18740 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS18740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS18740 PF00672 HAMP domain RD05_RS18750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD05_RS18750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD05_RS18750 PF01842 ACT domain RD05_RS18755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS18755 PF03466 LysR substrate binding domain RD05_RS18765 PF02682 Carboxyltransferase domain, subdomain C and D RD05_RS18770 PF02626 Carboxyltransferase domain, subdomain A and B RD05_RS18775 PF03746 LamB/YcsF family RD05_RS18785 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS18790 PF01494 FAD binding domain RD05_RS18795 PF01494 FAD binding domain RD05_RS18800 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS18810 PF02515 CoA-transferase family III RD05_RS18815 PF00392 Bacterial regulatory proteins, gntR family RD05_RS18815 PF07729 FCD domain RD05_RS18830 PF00291 Pyridoxal-phosphate dependent enzyme RD05_RS18830 PF00585 C-terminal regulatory domain of Threonine dehydratase RD05_RS18835 PF13609 Gram-negative porin RD05_RS18850 PF03466 LysR substrate binding domain RD05_RS18850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD05_RS18860 PF04552 Sigma-54, DNA binding domain RD05_RS18860 PF00309 Sigma-54 factor, Activator interacting domain (AID) RD05_RS18860 PF04963 Sigma-54 factor, core binding domain RD05_RS18870 PF00682 HMGL-like RD05_RS18870 PF08502 LeuA allosteric (dimerisation) domain RD05_RS18875 PF01425 Amidase RD05_RS18885 PF00356 Bacterial regulatory proteins, lacI family RD05_RS18900 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS18905 PF00005 ABC transporter RD05_RS18905 PF12857 TOBE-like domain RD05_RS18920 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD05_RS18920 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD05_RS18920 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD05_RS18925 PF07690 Major Facilitator Superfamily RD05_RS18930 PF12804 MobA-like NTP transferase domain RD05_RS18930 PF00132 Bacterial transferase hexapeptide (six repeats) RD05_RS18930 PF14602 Hexapeptide repeat of succinyl-transferase RD05_RS18950 PF02630 SCO1/SenC RD05_RS18955 PF01040 UbiA prenyltransferase family RD05_RS18960 PF02628 Cytochrome oxidase assembly protein RD05_RS18980 PF00510 Cytochrome c oxidase subunit III RD05_RS18995 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD05_RS19000 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD05_RS19000 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RD05_RS19010 PF00999 Sodium/hydrogen exchanger family RD05_RS19015 PF00149 Calcineurin-like phosphoesterase RD05_RS19020 PF00140 Sigma-70 factor, region 1.2 RD05_RS19020 PF04542 Sigma-70 region 2 RD05_RS19020 PF04545 Sigma-70, region 4 RD05_RS19030 PF00756 Putative esterase RD05_RS19035 PF00107 Zinc-binding dehydrogenase RD05_RS19035 PF08240 Alcohol dehydrogenase GroES-like domain RD05_RS19045 PF04898 Glutamate synthase central domain RD05_RS19045 PF00310 Glutamine amidotransferases class-II RD05_RS19045 PF01493 GXGXG motif RD05_RS19045 PF01645 Conserved region in glutamate synthase RD05_RS19050 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RD05_RS19050 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD05_RS19055 PF03922 OmpW family RD05_RS19060 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS19065 PF00005 ABC transporter RD05_RS19070 PF02405 Permease MlaE RD05_RS19075 PF02470 MlaD protein RD05_RS19080 PF04333 MlaA lipoprotein RD05_RS19090 PF00005 ABC transporter RD05_RS19095 PF01061 ABC-2 type transporter RD05_RS19105 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD05_RS19110 PF01634 ATP phosphoribosyltransferase RD05_RS19115 PF00815 Histidinol dehydrogenase RD05_RS19120 PF00155 Aminotransferase class I and II RD05_RS19125 PF00475 Imidazoleglycerol-phosphate dehydratase RD05_RS19135 PF00977 Histidine biosynthesis protein RD05_RS19140 PF00977 Histidine biosynthesis protein RD05_RS19145 PF01502 Phosphoribosyl-AMP cyclohydrolase RD05_RS19150 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RD05_RS19155 PF01230 HIT domain RD05_RS19160 PF02416 mttA/Hcf106 family RD05_RS19165 PF02416 mttA/Hcf106 family RD05_RS19170 PF00902 Sec-independent protein translocase protein (TatC) RD05_RS19180 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS19185 PF02917 Pertussis toxin, subunit 1 RD05_RS19190 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD05_RS19190 PF03440 Aerolysin/Pertussis toxin (APT) domain RD05_RS19195 PF09275 Pertussis toxin S4 subunit RD05_RS19200 PF09276 Pertussis toxin S5 subunit RD05_RS19205 PF03440 Aerolysin/Pertussis toxin (APT) domain RD05_RS19205 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD05_RS19210 PF04956 TrbC/VIRB2 family RD05_RS19215 PF05101 Type IV secretory pathway, VirB3-like protein RD05_RS19220 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RD05_RS19225 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RD05_RS19235 PF04335 VirB8 protein RD05_RS19240 PF03524 Conjugal transfer protein RD05_RS19245 PF03743 Bacterial conjugation TrbI-like protein RD05_RS19250 PF00437 Type II/IV secretion system protein RD05_RS19260 PF00892 EamA-like transporter family RD05_RS19280 PF10396 GTP-binding protein TrmE N-terminus RD05_RS19280 PF12631 MnmE helical domain RD05_RS19280 PF01926 50S ribosome-binding GTPase RD05_RS19285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS19290 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS19295 PF12911 N-terminal TM domain of oligopeptide transport permease C RD05_RS19295 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS19300 PF00005 ABC transporter RD05_RS19300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS19310 PF01960 ArgJ family RD05_RS19320 PF00293 NUDIX domain RD05_RS19340 PF02321 Outer membrane efflux protein RD05_RS19345 PF00873 AcrB/AcrD/AcrF family RD05_RS19350 PF00873 AcrB/AcrD/AcrF family RD05_RS19355 PF13533 Biotin-lipoyl like RD05_RS19360 PF07072 Cell division protein RD05_RS19365 PF01121 Dephospho-CoA kinase RD05_RS19370 PF01478 Type IV leader peptidase family RD05_RS19370 PF06750 Bacterial Peptidase A24 N-terminal domain RD05_RS19385 PF02569 Pantoate-beta-alanine ligase RD05_RS19390 PF02616 Segregation and condensation protein ScpA RD05_RS19400 PF07690 Major Facilitator Superfamily RD05_RS19405 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RD05_RS19405 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RD05_RS19415 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS19420 PF00005 ABC transporter RD05_RS19425 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS19430 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS19435 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD05_RS19440 PF00005 ABC transporter RD05_RS19445 PF18075 FtsX extracellular domain RD05_RS19450 PF03975 CheD chemotactic sensory transduction RD05_RS19460 PF00730 HhH-GPD superfamily base excision DNA repair protein RD05_RS19460 PF10576 Iron-sulfur binding domain of endonuclease III RD05_RS19460 PF14815 NUDIX domain RD05_RS19460 PF00633 Helix-hairpin-helix motif RD05_RS19470 PF08241 Methyltransferase domain RD05_RS19480 PF02515 CoA-transferase family III RD05_RS19485 PF02515 CoA-transferase family III RD05_RS19495 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS19500 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS19505 PF00881 Nitroreductase family RD05_RS19515 PF00682 HMGL-like RD05_RS19520 PF00378 Enoyl-CoA hydratase/isomerase RD05_RS19525 PF02515 CoA-transferase family III RD05_RS19530 PF03401 Tripartite tricarboxylate transporter family receptor RD05_RS19540 PF06628 Catalase-related immune-responsive RD05_RS19540 PF00199 Catalase RD05_RS19545 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS19550 PF00005 ABC transporter RD05_RS19560 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD05_RS19565 PF01546 Peptidase family M20/M25/M40 RD05_RS19565 PF07687 Peptidase dimerisation domain RD05_RS19570 PF00005 ABC transporter RD05_RS19570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS19575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD05_RS19575 PF00005 ABC transporter RD05_RS19580 PF12911 N-terminal TM domain of oligopeptide transport permease C RD05_RS19580 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS19585 PF00528 Binding-protein-dependent transport system inner membrane component RD05_RS19590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD05_RS19595 PF01926 50S ribosome-binding GTPase RD05_RS19595 PF12631 MnmE helical domain RD05_RS19595 PF10396 GTP-binding protein TrmE N-terminus RD05_RS19605 PF00072 Response regulator receiver domain RD05_RS19605 PF00486 Transcriptional regulatory protein, C terminal RD05_RS19610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD05_RS19610 PF00512 His Kinase A (phospho-acceptor) domain RD05_RS19625 PF01970 Tripartite tricarboxylate transporter TctA family RD05_RS19630 PF00155 Aminotransferase class I and II RD05_RS19635 PF00313 'Cold-shock' DNA-binding domain