locus-tag class description RD07_RS00005 PF13932 GidA associated domain RD07_RS00005 PF01134 Glucose inhibited division protein A RD07_RS00010 PF02527 rRNA small subunit methyltransferase G RD07_RS00015 PF13614 AAA domain RD07_RS00025 PF02195 ParB-like nuclease domain RD07_RS00025 PF17762 HTH domain found in ParB protein RD07_RS00030 PF00710 Asparaginase, N-terminal RD07_RS00030 PF17763 Glutaminase/Asparaginase C-terminal domain RD07_RS00035 PF17763 Glutaminase/Asparaginase C-terminal domain RD07_RS00035 PF00710 Asparaginase, N-terminal RD07_RS00055 PF00009 Elongation factor Tu GTP binding domain RD07_RS00055 PF03143 Elongation factor Tu C-terminal domain RD07_RS00055 PF03144 Elongation factor Tu domain 2 RD07_RS00065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RD07_RS00070 PF02357 Transcription termination factor nusG RD07_RS00070 PF00467 KOW motif RD07_RS00075 PF00298 Ribosomal protein L11, RNA binding domain RD07_RS00075 PF03946 Ribosomal protein L11, N-terminal domain RD07_RS00080 PF00687 Ribosomal protein L1p/L10e family RD07_RS00085 PF00466 Ribosomal protein L10 RD07_RS00090 PF00542 Ribosomal protein L7/L12 C-terminal domain RD07_RS00090 PF16320 Ribosomal protein L7/L12 dimerisation domain RD07_RS00095 PF04561 RNA polymerase Rpb2, domain 2 RD07_RS00095 PF04565 RNA polymerase Rpb2, domain 3 RD07_RS00095 PF10385 RNA polymerase beta subunit external 1 domain RD07_RS00095 PF00562 RNA polymerase Rpb2, domain 6 RD07_RS00095 PF04560 RNA polymerase Rpb2, domain 7 RD07_RS00095 PF04563 RNA polymerase beta subunit RD07_RS00100 PF04997 RNA polymerase Rpb1, domain 1 RD07_RS00100 PF00623 RNA polymerase Rpb1, domain 2 RD07_RS00100 PF04983 RNA polymerase Rpb1, domain 3 RD07_RS00100 PF05000 RNA polymerase Rpb1, domain 4 RD07_RS00100 PF04998 RNA polymerase Rpb1, domain 5 RD07_RS00130 PF00072 Response regulator receiver domain RD07_RS00130 PF00486 Transcriptional regulatory protein, C terminal RD07_RS00140 PF02515 CoA-transferase family III RD07_RS00155 PF01575 MaoC like domain RD07_RS00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS00160 PF03466 LysR substrate binding domain RD07_RS00165 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS00185 PF02091 Glycyl-tRNA synthetase alpha subunit RD07_RS00190 PF02092 Glycyl-tRNA synthetase beta subunit RD07_RS00190 PF05746 DALR anticodon binding domain RD07_RS00200 PF01553 Acyltransferase RD07_RS00210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD07_RS00215 PF01327 Polypeptide deformylase RD07_RS00250 PF02615 Malate/L-lactate dehydrogenase RD07_RS00255 PF00561 alpha/beta hydrolase fold RD07_RS00260 PF00561 alpha/beta hydrolase fold RD07_RS00260 PF07021 Methionine biosynthesis protein MetW RD07_RS00270 PF07690 Major Facilitator Superfamily RD07_RS00280 PF01177 Asp/Glu/Hydantoin racemase RD07_RS00285 PF00005 ABC transporter RD07_RS00290 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS00295 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS00300 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS00330 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS00345 PF00970 Oxidoreductase FAD-binding domain RD07_RS00345 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS00345 PF00175 Oxidoreductase NAD-binding domain RD07_RS00350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD07_RS00360 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS00390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS00390 PF00183 Hsp90 protein RD07_RS00395 PF13417 Glutathione S-transferase, N-terminal domain RD07_RS00395 PF00043 Glutathione S-transferase, C-terminal domain RD07_RS00400 PF01510 N-acetylmuramoyl-L-alanine amidase RD07_RS00410 PF01578 Cytochrome C assembly protein RD07_RS00415 PF00448 SRP54-type protein, GTPase domain RD07_RS00415 PF02978 Signal peptide binding domain RD07_RS00415 PF02881 SRP54-type protein, helical bundle domain RD07_RS00430 PF02719 Polysaccharide biosynthesis protein RD07_RS00440 PF10997 Alternate to MurJ RD07_RS00445 PF00862 Sucrose synthase RD07_RS00445 PF00534 Glycosyl transferases group 1 RD07_RS00450 PF02397 Bacterial sugar transferase RD07_RS00455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD07_RS00465 PF02350 UDP-N-acetylglucosamine 2-epimerase RD07_RS00470 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD07_RS00475 PF00132 Bacterial transferase hexapeptide (six repeats) RD07_RS00480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RD07_RS00480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RD07_RS00485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD07_RS00490 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RD07_RS00490 PF00534 Glycosyl transferases group 1 RD07_RS00500 PF03309 Type III pantothenate kinase RD07_RS00510 PF02405 Permease MlaE RD07_RS00515 PF00005 ABC transporter RD07_RS00540 PF00768 D-alanyl-D-alanine carboxypeptidase RD07_RS00540 PF07943 Penicillin-binding protein 5, C-terminal domain RD07_RS00545 PF01063 Amino-transferase class IV RD07_RS00550 PF04359 Protein of unknown function (DUF493) RD07_RS00555 PF03099 Biotin/lipoate A/B protein ligase family RD07_RS00560 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RD07_RS00560 PF04055 Radical SAM superfamily RD07_RS00565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RD07_RS00570 PF04321 RmlD substrate binding domain RD07_RS00575 PF16363 GDP-mannose 4,6 dehydratase RD07_RS00590 PF01053 Cys/Met metabolism PLP-dependent enzyme RD07_RS00595 PF01323 DSBA-like thioredoxin domain RD07_RS00595 PF00085 Thioredoxin RD07_RS00605 PF03485 Arginyl tRNA synthetase N terminal domain RD07_RS00605 PF00750 tRNA synthetases class I (R) RD07_RS00605 PF05746 DALR anticodon binding domain RD07_RS00625 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS00630 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS00635 PF13416 Bacterial extracellular solute-binding protein RD07_RS00640 PF00005 ABC transporter RD07_RS00640 PF17912 MalK OB fold domain RD07_RS00645 PF00149 Calcineurin-like phosphoesterase RD07_RS00655 PF00005 ABC transporter RD07_RS00655 PF12857 TOBE-like domain RD07_RS00660 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS00675 PF00356 Bacterial regulatory proteins, lacI family RD07_RS00685 PF01425 Amidase RD07_RS00690 PF08502 LeuA allosteric (dimerisation) domain RD07_RS00690 PF00682 HMGL-like RD07_RS00700 PF04552 Sigma-54, DNA binding domain RD07_RS00700 PF04963 Sigma-54 factor, core binding domain RD07_RS00700 PF00309 Sigma-54 factor, Activator interacting domain (AID) RD07_RS00710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS00710 PF03466 LysR substrate binding domain RD07_RS00725 PF13609 Gram-negative porin RD07_RS00730 PF00585 C-terminal regulatory domain of Threonine dehydratase RD07_RS00730 PF00291 Pyridoxal-phosphate dependent enzyme RD07_RS00745 PF07729 FCD domain RD07_RS00745 PF00392 Bacterial regulatory proteins, gntR family RD07_RS00750 PF02515 CoA-transferase family III RD07_RS00760 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS00765 PF01494 FAD binding domain RD07_RS00770 PF01494 FAD binding domain RD07_RS00775 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS00785 PF03746 LamB/YcsF family RD07_RS00790 PF02626 Carboxyltransferase domain, subdomain A and B RD07_RS00795 PF02682 Carboxyltransferase domain, subdomain C and D RD07_RS00805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS00805 PF03466 LysR substrate binding domain RD07_RS00810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD07_RS00810 PF01842 ACT domain RD07_RS00810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD07_RS00820 PF00672 HAMP domain RD07_RS00820 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS00820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS00825 PF00486 Transcriptional regulatory protein, C terminal RD07_RS00825 PF00072 Response regulator receiver domain RD07_RS00830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS00830 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS00830 PF00989 PAS fold RD07_RS00830 PF11808 Phosphate regulon sensor protein PhoR RD07_RS00835 PF00486 Transcriptional regulatory protein, C terminal RD07_RS00835 PF00072 Response regulator receiver domain RD07_RS00840 PF01209 ubiE/COQ5 methyltransferase family RD07_RS00855 PF03109 ABC1 family RD07_RS00870 PF00005 ABC transporter RD07_RS00870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS00875 PF04536 TPM domain RD07_RS00885 PF00270 DEAD/DEAH box helicase RD07_RS00885 PF00271 Helicase conserved C-terminal domain RD07_RS00890 PF01810 LysE type translocator RD07_RS00895 PF00009 Elongation factor Tu GTP binding domain RD07_RS00895 PF03144 Elongation factor Tu domain 2 RD07_RS00895 PF16658 Class II release factor RF3, C-terminal domain RD07_RS00905 PF00210 Ferritin-like domain RD07_RS00930 PF00581 Rhodanese-like domain RD07_RS00930 PF17773 UPF0176 acylphosphatase like domain RD07_RS00935 PF01588 Putative tRNA binding domain RD07_RS00935 PF09334 tRNA synthetases class I (M) RD07_RS00945 PF10609 NUBPL iron-transfer P-loop NTPase RD07_RS00960 PF00692 dUTPase RD07_RS00985 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RD07_RS00985 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RD07_RS00985 PF01276 Orn/Lys/Arg decarboxylase, major domain RD07_RS01000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD07_RS01000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD07_RS01005 PF02535 ZIP Zinc transporter RD07_RS01010 PF01571 Aminomethyltransferase folate-binding domain RD07_RS01010 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD07_RS01015 PF01597 Glycine cleavage H-protein RD07_RS01020 PF02347 Glycine cleavage system P-protein RD07_RS01025 PF00392 Bacterial regulatory proteins, gntR family RD07_RS01025 PF07729 FCD domain RD07_RS01030 PF02515 CoA-transferase family III RD07_RS01040 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS01060 PF12146 Serine aminopeptidase, S33 RD07_RS01070 PF02426 Muconolactone delta-isomerase RD07_RS01075 PF01144 Coenzyme A transferase RD07_RS01080 PF01144 Coenzyme A transferase RD07_RS01085 PF01614 Bacterial transcriptional regulator RD07_RS01085 PF09339 IclR helix-turn-helix domain RD07_RS01095 PF02667 Short chain fatty acid transporter RD07_RS01100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD07_RS01100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD07_RS01105 PF03797 Autotransporter beta-domain RD07_RS01105 PF00082 Subtilase family RD07_RS01110 PF00311 Phosphoenolpyruvate carboxylase RD07_RS01115 PF06508 Queuosine biosynthesis protein QueC RD07_RS01140 PF02913 FAD linked oxidases, C-terminal domain RD07_RS01140 PF01565 FAD binding domain RD07_RS01145 PF00171 Aldehyde dehydrogenase family RD07_RS01150 PF13667 ThiC-associated domain RD07_RS01150 PF01964 Radical SAM ThiC family RD07_RS01155 PF02355 Protein export membrane protein RD07_RS01155 PF07549 SecD/SecF GG Motif RD07_RS01160 PF09518 HindIII restriction endonuclease RD07_RS01190 PF02627 Carboxymuconolactone decarboxylase family RD07_RS01195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD07_RS01195 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD07_RS01200 PF00392 Bacterial regulatory proteins, gntR family RD07_RS01200 PF07702 UTRA domain RD07_RS01205 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS01210 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD07_RS01220 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS01225 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RD07_RS01230 PF01743 Poly A polymerase head domain RD07_RS01230 PF12626 Polymerase A arginine-rich C-terminus RD07_RS01230 PF12627 Probable RNA and SrmB- binding site of polymerase A RD07_RS01240 PF00308 Bacterial dnaA protein RD07_RS01245 PF02769 AIR synthase related protein, C-terminal domain RD07_RS01245 PF00586 AIR synthase related protein, N-terminal domain RD07_RS01255 PF01119 DNA mismatch repair protein, C-terminal domain RD07_RS01255 PF08676 MutL C terminal dimerisation domain RD07_RS01260 PF09335 SNARE associated Golgi protein RD07_RS01265 PF11741 AMIN domain RD07_RS01265 PF01520 N-acetylmuramoyl-L-alanine amidase RD07_RS01270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RD07_RS01275 PF00206 Lyase RD07_RS01275 PF10415 Fumarase C C-terminus RD07_RS01285 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS01290 PF03466 LysR substrate binding domain RD07_RS01300 PF02515 CoA-transferase family III RD07_RS01305 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS01310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS01310 PF18158 Adaptive response protein AidB N-terminal domain RD07_RS01310 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS01330 PF01654 Cytochrome bd terminal oxidase subunit I RD07_RS01335 PF02322 Cytochrome bd terminal oxidase subunit II RD07_RS01340 PF08173 Membrane bound YbgT-like protein RD07_RS01345 PF00005 ABC transporter RD07_RS01345 PF00664 ABC transporter transmembrane region RD07_RS01350 PF00664 ABC transporter transmembrane region RD07_RS01350 PF00005 ABC transporter RD07_RS01355 PF00156 Phosphoribosyl transferase domain RD07_RS01370 PF13609 Gram-negative porin RD07_RS01395 PF04386 Stringent starvation protein B RD07_RS01400 PF02798 Glutathione S-transferase, N-terminal domain RD07_RS01400 PF00043 Glutathione S-transferase, C-terminal domain RD07_RS01405 PF02167 Cytochrome C1 family RD07_RS01410 PF00032 Cytochrome b(C-terminal)/b6/petD RD07_RS01410 PF00033 Cytochrome b/b6/petB RD07_RS01415 PF00355 Rieske [2Fe-2S] domain RD07_RS01415 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RD07_RS01420 PF01741 Large-conductance mechanosensitive channel, MscL RD07_RS01425 PF01784 NIF3 (NGG1p interacting factor 3) RD07_RS01430 PF13180 PDZ domain RD07_RS01440 PF04299 Putative FMN-binding domain RD07_RS01445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD07_RS01450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS01455 PF07859 alpha/beta hydrolase fold RD07_RS01465 PF00682 HMGL-like RD07_RS01465 PF08502 LeuA allosteric (dimerisation) domain RD07_RS01470 PF12833 Helix-turn-helix domain RD07_RS01475 PF00920 Dehydratase family RD07_RS01480 PF07690 Major Facilitator Superfamily RD07_RS01485 PF03466 LysR substrate binding domain RD07_RS01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS01495 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RD07_RS01525 PF07859 alpha/beta hydrolase fold RD07_RS01535 PF02653 Branched-chain amino acid transport system / permease component RD07_RS01540 PF11862 Domain of unknown function (DUF3382) RD07_RS01540 PF02653 Branched-chain amino acid transport system / permease component RD07_RS01545 PF00005 ABC transporter RD07_RS01545 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD07_RS01550 PF00005 ABC transporter RD07_RS01565 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS01570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS01570 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS01570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS01575 PF13193 AMP-binding enzyme C-terminal domain RD07_RS01575 PF00501 AMP-binding enzyme RD07_RS01595 PF00202 Aminotransferase class-III RD07_RS01600 PF02581 Thiamine monophosphate synthase RD07_RS01605 PF08543 Phosphomethylpyrimidine kinase RD07_RS01610 PF00301 Rubredoxin RD07_RS01615 PF02622 Uncharacterized ACR, COG1678 RD07_RS01620 PF03652 Holliday junction resolvase RD07_RS01625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD07_RS01625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD07_RS01630 PF01979 Amidohydrolase family RD07_RS01635 PF01553 Acyltransferase RD07_RS01640 PF00149 Calcineurin-like phosphoesterase RD07_RS01650 PF00912 Transglycosylase RD07_RS01665 PF13193 AMP-binding enzyme C-terminal domain RD07_RS01665 PF00501 AMP-binding enzyme RD07_RS01670 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS01685 PF12706 Beta-lactamase superfamily domain RD07_RS01690 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS01710 PF00563 EAL domain RD07_RS01710 PF03707 Bacterial signalling protein N terminal repeat RD07_RS01710 PF00990 Diguanylate cyclase, GGDEF domain RD07_RS01715 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD07_RS01715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD07_RS01720 PF13532 2OG-Fe(II) oxygenase superfamily RD07_RS01725 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA RD07_RS01730 PF04463 Protein of unknown function (DUF523) RD07_RS01735 PF00005 ABC transporter RD07_RS01740 PF01032 FecCD transport family RD07_RS01745 PF01497 Periplasmic binding protein RD07_RS01750 PF05171 Haemin-degrading HemS.ChuX domain RD07_RS01755 PF00593 TonB dependent receptor RD07_RS01755 PF04886 PT repeat RD07_RS01755 PF07715 TonB-dependent Receptor Plug Domain RD07_RS01760 PF16220 Domain of unknown function (DUF4880) RD07_RS01760 PF04773 FecR protein RD07_RS01765 PF04542 Sigma-70 region 2 RD07_RS01765 PF08281 Sigma-70, region 4 RD07_RS01790 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD07_RS01805 PF00392 Bacterial regulatory proteins, gntR family RD07_RS01805 PF07729 FCD domain RD07_RS01825 PF00171 Aldehyde dehydrogenase family RD07_RS01835 PF00970 Oxidoreductase FAD-binding domain RD07_RS01835 PF00175 Oxidoreductase NAD-binding domain RD07_RS01835 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS01860 PF03458 UPF0126 domain RD07_RS01865 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD07_RS01865 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD07_RS01870 PF03372 Endonuclease/Exonuclease/phosphatase family RD07_RS01875 PF00156 Phosphoribosyl transferase domain RD07_RS01880 PF02637 GatB domain RD07_RS01880 PF02934 GatB/GatE catalytic domain RD07_RS01885 PF01425 Amidase RD07_RS01890 PF02686 Glu-tRNAGln amidotransferase C subunit RD07_RS01900 PF04085 rod shape-determining protein MreC RD07_RS01910 PF00905 Penicillin binding protein transpeptidase domain RD07_RS01910 PF03717 Penicillin-binding Protein dimerisation domain RD07_RS01915 PF01098 Cell cycle protein RD07_RS01920 PF02615 Malate/L-lactate dehydrogenase RD07_RS01925 PF00939 Sodium:sulfate symporter transmembrane region RD07_RS01930 PF00440 Bacterial regulatory proteins, tetR family RD07_RS01940 PF00696 Amino acid kinase family RD07_RS01945 PF03180 NLPA lipoprotein RD07_RS01950 PF00578 AhpC/TSA family RD07_RS01955 PF04972 BON domain RD07_RS01960 PF13580 SIS domain RD07_RS01965 PF02021 Uncharacterised protein family UPF0102 RD07_RS01970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD07_RS01975 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD07_RS01975 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD07_RS01995 PF02515 CoA-transferase family III RD07_RS02000 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS02005 PF02515 CoA-transferase family III RD07_RS02025 PF09339 IclR helix-turn-helix domain RD07_RS02030 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS02040 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS02045 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD07_RS02045 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS02045 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD07_RS02050 PF02515 CoA-transferase family III RD07_RS02055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD07_RS02055 PF00205 Thiamine pyrophosphate enzyme, central domain RD07_RS02055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD07_RS02060 PF03466 LysR substrate binding domain RD07_RS02060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS02070 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS02080 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS02090 PF00892 EamA-like transporter family RD07_RS02095 PF01810 LysE type translocator RD07_RS02100 PF12146 Serine aminopeptidase, S33 RD07_RS02115 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RD07_RS02120 PF00535 Glycosyl transferase family 2 RD07_RS02135 PF03616 Sodium/glutamate symporter RD07_RS02145 PF02667 Short chain fatty acid transporter RD07_RS02160 PF00929 Exonuclease RD07_RS02165 PF00873 AcrB/AcrD/AcrF family RD07_RS02185 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS02190 PF03466 LysR substrate binding domain RD07_RS02190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS02195 PF09330 D-lactate dehydrogenase, membrane binding RD07_RS02195 PF01565 FAD binding domain RD07_RS02200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS02200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS02200 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS02205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS02205 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS02205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS02210 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS02215 PF01546 Peptidase family M20/M25/M40 RD07_RS02215 PF07687 Peptidase dimerisation domain RD07_RS02225 PF01042 Endoribonuclease L-PSP RD07_RS02235 PF08240 Alcohol dehydrogenase GroES-like domain RD07_RS02235 PF00107 Zinc-binding dehydrogenase RD07_RS02240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS02240 PF03466 LysR substrate binding domain RD07_RS02245 PF13607 Succinyl-CoA ligase like flavodoxin domain RD07_RS02245 PF13380 CoA binding domain RD07_RS02250 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS02260 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS02265 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RD07_RS02270 PF01380 SIS domain RD07_RS02275 PF01037 Lrp/AsnC ligand binding domain RD07_RS02280 PF00108 Thiolase, N-terminal domain RD07_RS02280 PF02803 Thiolase, C-terminal domain RD07_RS02285 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD07_RS02285 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS02285 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD07_RS02290 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS02290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS02290 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD07_RS02290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS02295 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS02300 PF13380 CoA binding domain RD07_RS02300 PF13607 Succinyl-CoA ligase like flavodoxin domain RD07_RS02300 PF00583 Acetyltransferase (GNAT) family RD07_RS02315 PF00384 Molybdopterin oxidoreductase RD07_RS02315 PF01568 Molydopterin dinucleotide binding domain RD07_RS02330 PF01488 Shikimate / quinate 5-dehydrogenase RD07_RS02330 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RD07_RS02330 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RD07_RS02335 PF00472 RF-1 domain RD07_RS02335 PF03462 PCRF domain RD07_RS02340 PF05175 Methyltransferase small domain RD07_RS02340 PF17827 PrmC N-terminal domain RD07_RS02345 PF00462 Glutaredoxin RD07_RS02350 PF02441 Flavoprotein RD07_RS02355 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS02360 PF09084 NMT1/THI5 like RD07_RS02365 PF00941 FAD binding domain in molybdopterin dehydrogenase RD07_RS02365 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD07_RS02370 PF01799 [2Fe-2S] binding domain RD07_RS02370 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS02375 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD07_RS02375 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD07_RS02395 PF05036 Sporulation related domain RD07_RS02395 PF03330 Lytic transglycolase RD07_RS02400 PF03668 P-loop ATPase protein family RD07_RS02410 PF00034 Cytochrome c RD07_RS02410 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD07_RS02410 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD07_RS02415 PF07475 HPr Serine kinase C-terminal domain RD07_RS02415 PF02603 HPr Serine kinase N terminus RD07_RS02420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RD07_RS02425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RD07_RS02430 PF00005 ABC transporter RD07_RS02450 PF00571 CBS domain RD07_RS02450 PF01380 SIS domain RD07_RS02455 PF02222 ATP-grasp domain RD07_RS02455 PF01370 NAD dependent epimerase/dehydratase family RD07_RS02460 PF07715 TonB-dependent Receptor Plug Domain RD07_RS02460 PF00593 TonB dependent receptor RD07_RS02470 PF00732 GMC oxidoreductase RD07_RS02470 PF05199 GMC oxidoreductase RD07_RS02490 PF01336 OB-fold nucleic acid binding domain RD07_RS02490 PF00152 tRNA synthetases class II (D, K and N) RD07_RS02490 PF02938 GAD domain RD07_RS02495 PF03372 Endonuclease/Exonuclease/phosphatase family RD07_RS02500 PF13091 PLD-like domain RD07_RS02525 PF13458 Periplasmic binding protein RD07_RS02530 PF01425 Amidase RD07_RS02535 PF05995 Cysteine dioxygenase type I RD07_RS02540 PF09339 IclR helix-turn-helix domain RD07_RS02540 PF01614 Bacterial transcriptional regulator RD07_RS02555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD07_RS02555 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS02555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD07_RS02560 PF05275 Copper resistance protein B precursor (CopB) RD07_RS02565 PF00394 Multicopper oxidase RD07_RS02565 PF07732 Multicopper oxidase RD07_RS02565 PF07731 Multicopper oxidase RD07_RS02595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD07_RS02595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD07_RS02595 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RD07_RS02600 PF02515 CoA-transferase family III RD07_RS02605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS02605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS02605 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS02620 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS02625 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS02630 PF01256 Carbohydrate kinase RD07_RS02650 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS02655 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS02655 PF12911 N-terminal TM domain of oligopeptide transport permease C RD07_RS02660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS02660 PF00005 ABC transporter RD07_RS02670 PF01546 Peptidase family M20/M25/M40 RD07_RS02670 PF07687 Peptidase dimerisation domain RD07_RS02680 PF13361 UvrD-like helicase C-terminal domain RD07_RS02680 PF00580 UvrD/REP helicase N-terminal domain RD07_RS02685 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RD07_RS02685 PF17764 3′ DNA-binding domain (3′BD) RD07_RS02685 PF00271 Helicase conserved C-terminal domain RD07_RS02685 PF18074 Primosomal protein N C-terminal domain RD07_RS02685 PF00270 DEAD/DEAH box helicase RD07_RS02690 PF01208 Uroporphyrinogen decarboxylase (URO-D) RD07_RS02700 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RD07_RS02705 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD07_RS02705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD07_RS02710 PF00231 ATP synthase RD07_RS02715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD07_RS02715 PF00306 ATP synthase alpha/beta chain, C terminal domain RD07_RS02715 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD07_RS02720 PF00213 ATP synthase delta (OSCP) subunit RD07_RS02725 PF00430 ATP synthase B/B' CF(0) RD07_RS02730 PF00137 ATP synthase subunit C RD07_RS02735 PF00119 ATP synthase A chain RD07_RS02760 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS02765 PF17820 PDZ domain RD07_RS02765 PF13180 PDZ domain RD07_RS02770 PF13192 Thioredoxin domain RD07_RS02770 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS02780 PF01171 PP-loop family RD07_RS02790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD07_RS02790 PF01842 ACT domain RD07_RS02790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD07_RS02795 PF13098 Thioredoxin-like domain RD07_RS02795 PF10411 Disulfide bond isomerase protein N-terminus RD07_RS02800 PF01494 FAD binding domain RD07_RS02805 PF03562 MltA specific insert domain RD07_RS02805 PF06725 3D domain RD07_RS02810 PF04379 ApaG domain RD07_RS02815 PF00834 Ribulose-phosphate 3 epimerase family RD07_RS02820 PF13419 Haloacid dehalogenase-like hydrolase RD07_RS02825 PF00425 chorismate binding enzyme RD07_RS02825 PF04715 Anthranilate synthase component I, N terminal region RD07_RS02830 PF00117 Glutamine amidotransferase class-I RD07_RS02835 PF00591 Glycosyl transferase family, a/b domain RD07_RS02835 PF02885 Glycosyl transferase family, helical bundle domain RD07_RS02840 PF00218 Indole-3-glycerol phosphate synthase RD07_RS02865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS02865 PF18158 Adaptive response protein AidB N-terminal domain RD07_RS02865 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS02870 PF03466 LysR substrate binding domain RD07_RS02875 PF00551 Formyl transferase RD07_RS02885 PF01613 Flavin reductase like domain RD07_RS02890 PF01243 Pyridoxamine 5'-phosphate oxidase RD07_RS02890 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RD07_RS02900 PF07690 Major Facilitator Superfamily RD07_RS02905 PF00899 ThiF family RD07_RS02910 PF00392 Bacterial regulatory proteins, gntR family RD07_RS02910 PF07702 UTRA domain RD07_RS02915 PF13193 AMP-binding enzyme C-terminal domain RD07_RS02915 PF00501 AMP-binding enzyme RD07_RS02920 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS02935 PF01063 Amino-transferase class IV RD07_RS02940 PF00425 chorismate binding enzyme RD07_RS02940 PF04715 Anthranilate synthase component I, N terminal region RD07_RS02945 PF00005 ABC transporter RD07_RS02945 PF17755 UvrA DNA-binding domain RD07_RS02945 PF17760 UvrA interaction domain RD07_RS02955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS02955 PF03466 LysR substrate binding domain RD07_RS02960 PF00535 Glycosyl transferase family 2 RD07_RS02965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS02970 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS02980 PF00005 ABC transporter RD07_RS02980 PF12848 ABC transporter RD07_RS03000 PF03776 Septum formation topological specificity factor MinE RD07_RS03005 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RD07_RS03010 PF05209 Septum formation inhibitor MinC, N-terminal domain RD07_RS03010 PF03775 Septum formation inhibitor MinC, C-terminal domain RD07_RS03015 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RD07_RS03015 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD07_RS03020 PF01654 Cytochrome bd terminal oxidase subunit I RD07_RS03030 PF13493 Domain of unknown function (DUF4118) RD07_RS03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS03030 PF02702 Osmosensitive K+ channel His kinase sensor domain RD07_RS03035 PF00072 Response regulator receiver domain RD07_RS03035 PF00486 Transcriptional regulatory protein, C terminal RD07_RS03050 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS03055 PF04391 Protein of unknown function (DUF533) RD07_RS03075 PF01476 LysM domain RD07_RS03075 PF01464 Transglycosylase SLT domain RD07_RS03080 PF16123 Hydroxyacylglutathione hydrolase C-terminus RD07_RS03080 PF00753 Metallo-beta-lactamase superfamily RD07_RS03085 PF08241 Methyltransferase domain RD07_RS03090 PF00075 RNase H RD07_RS03135 PF01575 MaoC like domain RD07_RS03140 PF02803 Thiolase, C-terminal domain RD07_RS03140 PF00108 Thiolase, N-terminal domain RD07_RS03150 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS03155 PF00106 short chain dehydrogenase RD07_RS03165 PF00005 ABC transporter RD07_RS03165 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD07_RS03170 PF00005 ABC transporter RD07_RS03175 PF02653 Branched-chain amino acid transport system / permease component RD07_RS03185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS03185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS03185 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS03190 PF08361 MAATS-type transcriptional repressor, C-terminal region RD07_RS03190 PF00440 Bacterial regulatory proteins, tetR family RD07_RS03195 PF14535 AMP-binding enzyme C-terminal domain RD07_RS03195 PF00501 AMP-binding enzyme RD07_RS03200 PF02515 CoA-transferase family III RD07_RS03220 PF04285 Protein of unknown function (DUF444) RD07_RS03225 PF04293 SpoVR like protein RD07_RS03240 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS03245 PF07476 Methylaspartate ammonia-lyase C-terminus RD07_RS03245 PF05034 Methylaspartate ammonia-lyase N-terminus RD07_RS03250 PF07702 UTRA domain RD07_RS03250 PF00392 Bacterial regulatory proteins, gntR family RD07_RS03265 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS03270 PF09278 MerR, DNA binding RD07_RS03270 PF00376 MerR family regulatory protein RD07_RS03275 PF01774 UreD urease accessory protein RD07_RS03280 PF00547 Urease, gamma subunit RD07_RS03285 PF04955 HupE / UreJ protein RD07_RS03290 PF00699 Urease beta subunit RD07_RS03295 PF00449 Urease alpha-subunit, N-terminal domain RD07_RS03295 PF01979 Amidohydrolase family RD07_RS03300 PF02814 UreE urease accessory protein, N-terminal domain RD07_RS03300 PF05194 UreE urease accessory protein, C-terminal domain RD07_RS03305 PF01730 UreF RD07_RS03310 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD07_RS03320 PF07364 Metallopeptidase family M81 RD07_RS03320 PF07171 MlrC C-terminus RD07_RS03330 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS03335 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS03340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS03345 PF00171 Aldehyde dehydrogenase family RD07_RS03350 PF00202 Aminotransferase class-III RD07_RS03355 PF00392 Bacterial regulatory proteins, gntR family RD07_RS03355 PF00155 Aminotransferase class I and II RD07_RS03360 PF00186 Dihydrofolate reductase RD07_RS03365 PF00303 Thymidylate synthase RD07_RS03375 PF03232 Ubiquinone biosynthesis protein COQ7 RD07_RS03380 PF00953 Glycosyl transferase family 4 RD07_RS03385 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD07_RS03385 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD07_RS03385 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD07_RS03390 PF01370 NAD dependent epimerase/dehydratase family RD07_RS03395 PF03023 Lipid II flippase MurJ RD07_RS03400 PF00534 Glycosyl transferases group 1 RD07_RS03400 PF13439 Glycosyltransferase Family 4 RD07_RS03405 PF00733 Asparagine synthase RD07_RS03405 PF13537 Glutamine amidotransferase domain RD07_RS03410 PF00534 Glycosyl transferases group 1 RD07_RS03410 PF13439 Glycosyltransferase Family 4 RD07_RS03415 PF13439 Glycosyltransferase Family 4 RD07_RS03415 PF00534 Glycosyl transferases group 1 RD07_RS03420 PF13477 Glycosyl transferase 4-like RD07_RS03420 PF00534 Glycosyl transferases group 1 RD07_RS03425 PF00342 Phosphoglucose isomerase RD07_RS03430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD07_RS03430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD07_RS03430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD07_RS03430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD07_RS03440 PF01565 FAD binding domain RD07_RS03440 PF02913 FAD linked oxidases, C-terminal domain RD07_RS03445 PF00072 Response regulator receiver domain RD07_RS03445 PF00486 Transcriptional regulatory protein, C terminal RD07_RS03450 PF08521 Two-component sensor kinase N-terminal RD07_RS03450 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS03455 PF00884 Sulfatase RD07_RS03465 PF04209 homogentisate 1,2-dioxygenase RD07_RS03470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS03470 PF03466 LysR substrate binding domain RD07_RS03480 PF01494 FAD binding domain RD07_RS03490 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RD07_RS03490 PF06827 Zinc finger found in FPG and IleRS RD07_RS03490 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RD07_RS03500 PF03550 Outer membrane lipoprotein LolB RD07_RS03505 PF08544 GHMP kinases C terminal RD07_RS03505 PF00288 GHMP kinases N terminal domain RD07_RS03515 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RD07_RS03515 PF14572 Phosphoribosyl synthetase-associated domain RD07_RS03520 PF14693 Ribosomal protein TL5, C-terminal domain RD07_RS03520 PF01386 Ribosomal L25p family RD07_RS03525 PF01195 Peptidyl-tRNA hydrolase RD07_RS03535 PF06071 Protein of unknown function (DUF933) RD07_RS03535 PF01926 50S ribosome-binding GTPase RD07_RS03540 PF00589 Phage integrase family RD07_RS03540 PF13356 Arm DNA-binding domain RD07_RS03555 PF01555 DNA methylase RD07_RS03560 PF13175 AAA ATPase domain RD07_RS03585 PF13361 UvrD-like helicase C-terminal domain RD07_RS03585 PF00580 UvrD/REP helicase N-terminal domain RD07_RS03600 PF12951 Passenger-associated-transport-repeat RD07_RS03610 PF00072 Response regulator receiver domain RD07_RS03610 PF00486 Transcriptional regulatory protein, C terminal RD07_RS03625 PF00440 Bacterial regulatory proteins, tetR family RD07_RS03625 PF17938 Tetracyclin repressor-like, C-terminal domain RD07_RS03650 PF01266 FAD dependent oxidoreductase RD07_RS03665 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS03675 PF01810 LysE type translocator RD07_RS03720 PF00561 alpha/beta hydrolase fold RD07_RS03730 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS03735 PF03459 TOBE domain RD07_RS03735 PF00005 ABC transporter RD07_RS03740 PF13091 PLD-like domain RD07_RS03750 PF03167 Uracil DNA glycosylase superfamily RD07_RS03755 PF00270 DEAD/DEAH box helicase RD07_RS03755 PF00271 Helicase conserved C-terminal domain RD07_RS03765 PF01743 Poly A polymerase head domain RD07_RS03765 PF12627 Probable RNA and SrmB- binding site of polymerase A RD07_RS03770 PF01464 Transglycosylase SLT domain RD07_RS03770 PF14718 Soluble lytic murein transglycosylase L domain RD07_RS03780 PF00083 Sugar (and other) transporter RD07_RS03780 PF07690 Major Facilitator Superfamily RD07_RS03785 PF00850 Histone deacetylase domain RD07_RS03790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS03790 PF03466 LysR substrate binding domain RD07_RS03800 PF02219 Methylenetetrahydrofolate reductase RD07_RS03805 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RD07_RS03810 PF05221 S-adenosyl-L-homocysteine hydrolase RD07_RS03810 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RD07_RS03815 PF13439 Glycosyltransferase Family 4 RD07_RS03815 PF00534 Glycosyl transferases group 1 RD07_RS03825 PF02773 S-adenosylmethionine synthetase, C-terminal domain RD07_RS03825 PF02772 S-adenosylmethionine synthetase, central domain RD07_RS03825 PF00438 S-adenosylmethionine synthetase, N-terminal domain RD07_RS03835 PF03279 Bacterial lipid A biosynthesis acyltransferase RD07_RS03840 PF01678 Diaminopimelate epimerase RD07_RS03850 PF02899 Phage integrase, N-terminal SAM-like domain RD07_RS03850 PF00589 Phage integrase family RD07_RS03855 PF00593 TonB dependent receptor RD07_RS03855 PF07715 TonB-dependent Receptor Plug Domain RD07_RS03860 PF03824 High-affinity nickel-transport protein RD07_RS03870 PF01297 Zinc-uptake complex component A periplasmic RD07_RS03875 PF00950 ABC 3 transport family RD07_RS03880 PF00005 ABC transporter RD07_RS03890 PF01475 Ferric uptake regulator family RD07_RS03895 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD07_RS03895 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD07_RS03900 PF01258 Prokaryotic dksA/traR C4-type zinc finger RD07_RS03905 PF00227 Proteasome subunit RD07_RS03910 PF07724 AAA domain (Cdc48 subfamily) RD07_RS03910 PF10431 C-terminal, D2-small domain, of ClpB protein RD07_RS03910 PF00004 ATPase family associated with various cellular activities (AAA) RD07_RS03920 PF01923 Cobalamin adenosyltransferase RD07_RS03940 PF02525 Flavodoxin-like fold RD07_RS03945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD07_RS03945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD07_RS03955 PF01970 Tripartite tricarboxylate transporter TctA family RD07_RS03995 PF01790 Prolipoprotein diacylglyceryl transferase RD07_RS04000 PF00920 Dehydratase family RD07_RS04005 PF00034 Cytochrome c RD07_RS04010 PF01625 Peptide methionine sulfoxide reductase RD07_RS04015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD07_RS04020 PF01037 Lrp/AsnC ligand binding domain RD07_RS04060 PF01546 Peptidase family M20/M25/M40 RD07_RS04060 PF07687 Peptidase dimerisation domain RD07_RS04065 PF01979 Amidohydrolase family RD07_RS04070 PF00005 ABC transporter RD07_RS04070 PF12848 ABC transporter RD07_RS04070 PF16326 ABC transporter C-terminal domain RD07_RS04080 PF02381 MraZ protein, putative antitoxin-like RD07_RS04085 PF01795 MraW methylase family RD07_RS04090 PF04999 Cell division protein FtsL RD07_RS04095 PF00905 Penicillin binding protein transpeptidase domain RD07_RS04095 PF03717 Penicillin-binding Protein dimerisation domain RD07_RS04100 PF02875 Mur ligase family, glutamate ligase domain RD07_RS04100 PF08245 Mur ligase middle domain RD07_RS04105 PF00953 Glycosyl transferase family 4 RD07_RS04110 PF08245 Mur ligase middle domain RD07_RS04110 PF02875 Mur ligase family, glutamate ligase domain RD07_RS04115 PF01098 Cell cycle protein RD07_RS04120 PF03033 Glycosyltransferase family 28 N-terminal domain RD07_RS04120 PF04101 Glycosyltransferase family 28 C-terminal domain RD07_RS04125 PF08245 Mur ligase middle domain RD07_RS04125 PF02875 Mur ligase family, glutamate ligase domain RD07_RS04125 PF01225 Mur ligase family, catalytic domain RD07_RS04130 PF07478 D-ala D-ala ligase C-terminus RD07_RS04130 PF01820 D-ala D-ala ligase N-terminus RD07_RS04135 PF03799 Cell division protein FtsQ RD07_RS04135 PF08478 POTRA domain, FtsQ-type RD07_RS04140 PF02491 SHS2 domain inserted in FTSA RD07_RS04145 PF00091 Tubulin/FtsZ family, GTPase domain RD07_RS04145 PF12327 FtsZ family, C-terminal domain RD07_RS04150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RD07_RS04160 PF08525 Opacity-associated protein A N-terminal motif RD07_RS04160 PF01476 LysM domain RD07_RS04160 PF01551 Peptidase family M23 RD07_RS04165 PF07517 SecA DEAD-like domain RD07_RS04165 PF02810 SEC-C motif RD07_RS04165 PF07516 SecA Wing and Scaffold domain RD07_RS04165 PF01043 SecA preprotein cross-linking domain RD07_RS04175 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS04185 PF00106 short chain dehydrogenase RD07_RS04190 PF01266 FAD dependent oxidoreductase RD07_RS04195 PF01037 Lrp/AsnC ligand binding domain RD07_RS04205 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RD07_RS04215 PF08501 Shikimate dehydrogenase substrate binding domain RD07_RS04215 PF01488 Shikimate / quinate 5-dehydrogenase RD07_RS04215 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RD07_RS04225 PF00773 RNB domain RD07_RS04230 PF05728 Uncharacterised protein family (UPF0227) RD07_RS04235 PF01225 Mur ligase family, catalytic domain RD07_RS04235 PF02875 Mur ligase family, glutamate ligase domain RD07_RS04235 PF08245 Mur ligase middle domain RD07_RS04240 PF08534 Redoxin RD07_RS04245 PF01220 Dehydroquinase class II RD07_RS04250 PF00364 Biotin-requiring enzyme RD07_RS04255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD07_RS04255 PF02785 Biotin carboxylase C-terminal domain RD07_RS04255 PF00289 Biotin carboxylase, N-terminal domain RD07_RS04270 PF00294 pfkB family carbohydrate kinase RD07_RS04295 PF03062 MBOAT, membrane-bound O-acyltransferase family RD07_RS04300 PF13193 AMP-binding enzyme C-terminal domain RD07_RS04300 PF00501 AMP-binding enzyme RD07_RS04315 PF00268 Ribonucleotide reductase, small chain RD07_RS04320 PF00317 Ribonucleotide reductase, all-alpha domain RD07_RS04320 PF03477 ATP cone domain RD07_RS04320 PF02867 Ribonucleotide reductase, barrel domain RD07_RS04335 PF01037 Lrp/AsnC ligand binding domain RD07_RS04350 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD07_RS04355 PF13380 CoA binding domain RD07_RS04355 PF00583 Acetyltransferase (GNAT) family RD07_RS04355 PF13607 Succinyl-CoA ligase like flavodoxin domain RD07_RS04365 PF07729 FCD domain RD07_RS04365 PF00392 Bacterial regulatory proteins, gntR family RD07_RS04375 PF00271 Helicase conserved C-terminal domain RD07_RS04375 PF03880 DbpA RNA binding domain RD07_RS04375 PF00270 DEAD/DEAH box helicase RD07_RS04380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD07_RS04385 PF00857 Isochorismatase family RD07_RS04390 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS04395 PF00005 ABC transporter RD07_RS04405 PF02230 Phospholipase/Carboxylesterase RD07_RS04410 PF04751 Protein of unknown function (DUF615) RD07_RS04415 PF01523 Putative modulator of DNA gyrase RD07_RS04420 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS04425 PF00572 Ribosomal protein L13 RD07_RS04430 PF00380 Ribosomal protein S9/S16 RD07_RS04435 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD07_RS04435 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD07_RS04445 PF01521 Iron-sulphur cluster biosynthesis RD07_RS04450 PF03702 Anhydro-N-acetylmuramic acid kinase RD07_RS04455 PF01551 Peptidase family M23 RD07_RS04455 PF08460 Bacterial SH3 domain RD07_RS04465 PF01479 S4 domain RD07_RS04465 PF00579 tRNA synthetases class I (W and Y) RD07_RS04475 PF00464 Serine hydroxymethyltransferase RD07_RS04480 PF03477 ATP cone domain RD07_RS04495 PF01872 RibD C-terminal domain RD07_RS04495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD07_RS04510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS04510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS04510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS04510 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS04510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS04510 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS04520 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS04525 PF03466 LysR substrate binding domain RD07_RS04525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS04530 PF02515 CoA-transferase family III RD07_RS04550 PF02678 Pirin RD07_RS04550 PF05726 Pirin C-terminal cupin domain RD07_RS04565 PF00072 Response regulator receiver domain RD07_RS04570 PF06481 COX Aromatic Rich Motif RD07_RS04570 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD07_RS04575 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD07_RS04580 PF00510 Cytochrome c oxidase subunit III RD07_RS04585 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD07_RS04590 PF01022 Bacterial regulatory protein, arsR family RD07_RS04610 PF05114 Protein of unknown function (DUF692) RD07_RS04625 PF07715 TonB-dependent Receptor Plug Domain RD07_RS04625 PF00593 TonB dependent receptor RD07_RS04640 PF01476 LysM domain RD07_RS04640 PF01551 Peptidase family M23 RD07_RS04655 PF04461 Protein of unknown function (DUF520) RD07_RS04665 PF08281 Sigma-70, region 4 RD07_RS04665 PF04542 Sigma-70 region 2 RD07_RS04685 PF00795 Carbon-nitrogen hydrolase RD07_RS04690 PF01523 Putative modulator of DNA gyrase RD07_RS04695 PF00793 DAHP synthetase I family RD07_RS04700 PF13018 Extended Signal Peptide of Type V secretion system RD07_RS04700 PF05860 haemagglutination activity domain RD07_RS04700 PF13018 Extended Signal Peptide of Type V secretion system RD07_RS04700 PF13332 Hemagglutinin repeat RD07_RS04700 PF05860 haemagglutination activity domain RD07_RS04700 PF13332 Hemagglutinin repeat RD07_RS04700 PF05594 Haemagluttinin repeat RD07_RS04700 PF05594 Haemagluttinin repeat RD07_RS04705 PF01565 FAD binding domain RD07_RS04705 PF02913 FAD linked oxidases, C-terminal domain RD07_RS04710 PF01565 FAD binding domain RD07_RS04710 PF02913 FAD linked oxidases, C-terminal domain RD07_RS04715 PF01565 FAD binding domain RD07_RS04720 PF02754 Cysteine-rich domain RD07_RS04720 PF13183 4Fe-4S dicluster domain RD07_RS04725 PF00756 Putative esterase RD07_RS04730 PF07715 TonB-dependent Receptor Plug Domain RD07_RS04730 PF00593 TonB dependent receptor RD07_RS04740 PF02233 NAD(P) transhydrogenase beta subunit RD07_RS04745 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RD07_RS04745 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RD07_RS04755 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS04760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS04760 PF03466 LysR substrate binding domain RD07_RS04770 PF01925 Sulfite exporter TauE/SafE RD07_RS04775 PF00043 Glutathione S-transferase, C-terminal domain RD07_RS04775 PF13417 Glutathione S-transferase, N-terminal domain RD07_RS04780 PF00206 Lyase RD07_RS04780 PF08328 Adenylosuccinate lyase C-terminal RD07_RS04785 PF01322 Cytochrome C' RD07_RS04805 PF01594 AI-2E family transporter RD07_RS04815 PF00392 Bacterial regulatory proteins, gntR family RD07_RS04815 PF07729 FCD domain RD07_RS04825 PF01425 Amidase RD07_RS04830 PF02515 CoA-transferase family III RD07_RS04835 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS04850 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS04855 PF00005 ABC transporter RD07_RS04870 PF09339 IclR helix-turn-helix domain RD07_RS04870 PF01614 Bacterial transcriptional regulator RD07_RS04880 PF13193 AMP-binding enzyme C-terminal domain RD07_RS04880 PF00501 AMP-binding enzyme RD07_RS04885 PF01042 Endoribonuclease L-PSP RD07_RS04890 PF02653 Branched-chain amino acid transport system / permease component RD07_RS04905 PF00005 ABC transporter RD07_RS04910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD07_RS04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS04925 PF03466 LysR substrate binding domain RD07_RS04935 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD07_RS04940 PF07690 Major Facilitator Superfamily RD07_RS04945 PF03466 LysR substrate binding domain RD07_RS04945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS04960 PF01425 Amidase RD07_RS04965 PF00677 Lumazine binding domain RD07_RS04970 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS04975 PF01037 Lrp/AsnC ligand binding domain RD07_RS04975 PF13404 AsnC-type helix-turn-helix domain RD07_RS04985 PF00501 AMP-binding enzyme RD07_RS04985 PF13193 AMP-binding enzyme C-terminal domain RD07_RS04995 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS05000 PF00005 ABC transporter RD07_RS05015 PF00107 Zinc-binding dehydrogenase RD07_RS05015 PF08240 Alcohol dehydrogenase GroES-like domain RD07_RS05035 PF00403 Heavy-metal-associated domain RD07_RS05040 PF01966 HD domain RD07_RS05045 PF00155 Aminotransferase class I and II RD07_RS05050 PF03466 LysR substrate binding domain RD07_RS05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS05060 PF00083 Sugar (and other) transporter RD07_RS05080 PF13609 Gram-negative porin RD07_RS05085 PF02548 Ketopantoate hydroxymethyltransferase RD07_RS05090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS05090 PF03466 LysR substrate binding domain RD07_RS05135 PF00440 Bacterial regulatory proteins, tetR family RD07_RS05145 PF05170 AsmA family RD07_RS05150 PF03352 Methyladenine glycosylase RD07_RS05155 PF00376 MerR family regulatory protein RD07_RS05155 PF09278 MerR, DNA binding RD07_RS05170 PF01547 Bacterial extracellular solute-binding protein RD07_RS05180 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS05180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD07_RS05185 PF00005 ABC transporter RD07_RS05185 PF08402 TOBE domain RD07_RS05190 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS05195 PF14785 Maltose transport system permease protein MalF P2 domain RD07_RS05195 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS05220 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS05225 PF00392 Bacterial regulatory proteins, gntR family RD07_RS05225 PF07729 FCD domain RD07_RS05250 PF00465 Iron-containing alcohol dehydrogenase RD07_RS05265 PF03180 NLPA lipoprotein RD07_RS05270 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS05275 PF09383 NIL domain RD07_RS05275 PF00005 ABC transporter RD07_RS05280 PF13802 Galactose mutarotase-like RD07_RS05280 PF01055 Glycosyl hydrolases family 31 RD07_RS05290 PF00459 Inositol monophosphatase family RD07_RS05300 PF00501 AMP-binding enzyme RD07_RS05300 PF13193 AMP-binding enzyme C-terminal domain RD07_RS05305 PF07687 Peptidase dimerisation domain RD07_RS05305 PF01546 Peptidase family M20/M25/M40 RD07_RS05310 PF03466 LysR substrate binding domain RD07_RS05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS05315 PF03601 Conserved hypothetical protein 698 RD07_RS05320 PF03061 Thioesterase superfamily RD07_RS05325 PF03448 MgtE intracellular N domain RD07_RS05325 PF01769 Divalent cation transporter RD07_RS05325 PF00571 CBS domain RD07_RS05345 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS05355 PF02609 Exonuclease VII small subunit RD07_RS05360 PF00348 Polyprenyl synthetase RD07_RS05365 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RD07_RS05365 PF02780 Transketolase, C-terminal domain RD07_RS05365 PF02779 Transketolase, pyrimidine binding domain RD07_RS05370 PF02649 Type I GTP cyclohydrolase folE2 RD07_RS05375 PF01250 Ribosomal protein S6 RD07_RS05385 PF01084 Ribosomal protein S18 RD07_RS05390 PF01281 Ribosomal protein L9, N-terminal domain RD07_RS05390 PF03948 Ribosomal protein L9, C-terminal domain RD07_RS05400 PF00772 DnaB-like helicase N terminal domain RD07_RS05400 PF03796 DnaB-like helicase C terminal domain RD07_RS05405 PF13593 SBF-like CPA transporter family (DUF4137) RD07_RS05410 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD07_RS05420 PF00578 AhpC/TSA family RD07_RS05425 PF04430 Protein of unknown function (DUF498/DUF598) RD07_RS05430 PF00155 Aminotransferase class I and II RD07_RS05435 PF00742 Homoserine dehydrogenase RD07_RS05435 PF01842 ACT domain RD07_RS05435 PF03447 Homoserine dehydrogenase, NAD binding domain RD07_RS05440 PF00291 Pyridoxal-phosphate dependent enzyme RD07_RS05440 PF14821 Threonine synthase N terminus RD07_RS05455 PF02615 Malate/L-lactate dehydrogenase RD07_RS05465 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS05480 PF03328 HpcH/HpaI aldolase/citrate lyase family RD07_RS05485 PF01649 Ribosomal protein S20 RD07_RS05495 PF03023 Lipid II flippase MurJ RD07_RS05500 PF00106 short chain dehydrogenase RD07_RS05505 PF05191 Adenylate kinase, active site lid RD07_RS05510 PF02348 Cytidylyltransferase RD07_RS05515 PF03966 Trm112p-like protein RD07_RS05520 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RD07_RS05525 PF02472 Biopolymer transport protein ExbD/TolR RD07_RS05530 PF01618 MotA/TolQ/ExbB proton channel family RD07_RS05540 PF13742 OB-fold nucleic acid binding domain RD07_RS05540 PF02601 Exonuclease VII, large subunit RD07_RS05545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD07_RS05545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD07_RS05550 PF00654 Voltage gated chloride channel RD07_RS05555 PF02803 Thiolase, C-terminal domain RD07_RS05555 PF00108 Thiolase, N-terminal domain RD07_RS05565 PF00313 'Cold-shock' DNA-binding domain RD07_RS05570 PF02617 ATP-dependent Clp protease adaptor protein ClpS RD07_RS05575 PF17962 Bacterial macroglobulin domain 6 RD07_RS05575 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RD07_RS05575 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RD07_RS05575 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RD07_RS05575 PF07703 Alpha-2-macroglobulin bait region domain RD07_RS05575 PF00207 Alpha-2-macroglobulin family RD07_RS05575 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RD07_RS05575 PF01835 MG2 domain RD07_RS05580 PF06832 Penicillin-Binding Protein C-terminus Family RD07_RS05580 PF00912 Transglycosylase RD07_RS05580 PF00905 Penicillin binding protein transpeptidase domain RD07_RS05585 PF10431 C-terminal, D2-small domain, of ClpB protein RD07_RS05585 PF02861 Clp amino terminal domain, pathogenicity island component RD07_RS05585 PF17871 AAA lid domain RD07_RS05585 PF07724 AAA domain (Cdc48 subfamily) RD07_RS05585 PF00004 ATPase family associated with various cellular activities (AAA) RD07_RS05590 PF04403 Paraquat-inducible protein A RD07_RS05595 PF02470 MlaD protein RD07_RS05605 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RD07_RS05605 PF14850 DNA-binding domain of Proline dehydrogenase RD07_RS05605 PF01619 Proline dehydrogenase RD07_RS05605 PF00171 Aldehyde dehydrogenase family RD07_RS05615 PF13458 Periplasmic binding protein RD07_RS05620 PF02653 Branched-chain amino acid transport system / permease component RD07_RS05625 PF02653 Branched-chain amino acid transport system / permease component RD07_RS05625 PF11862 Domain of unknown function (DUF3382) RD07_RS05630 PF00005 ABC transporter RD07_RS05630 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD07_RS05635 PF00005 ABC transporter RD07_RS05640 PF07690 Major Facilitator Superfamily RD07_RS05645 PF00440 Bacterial regulatory proteins, tetR family RD07_RS05655 PF03797 Autotransporter beta-domain RD07_RS05655 PF03212 Pertactin RD07_RS05665 PF00543 Nitrogen regulatory protein P-II RD07_RS05670 PF04380 Membrane fusogenic activity RD07_RS05685 PF07690 Major Facilitator Superfamily RD07_RS05685 PF00083 Sugar (and other) transporter RD07_RS05695 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD07_RS05700 PF00510 Cytochrome c oxidase subunit III RD07_RS05705 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD07_RS05710 PF02104 SURF1 family RD07_RS05730 PF13411 MerR HTH family regulatory protein RD07_RS05735 PF00403 Heavy-metal-associated domain RD07_RS05755 PF04055 Radical SAM superfamily RD07_RS05755 PF06968 Biotin and Thiamin Synthesis associated domain RD07_RS05770 PF08534 Redoxin RD07_RS05780 PF01738 Dienelactone hydrolase family RD07_RS05790 PF01967 MoaC family RD07_RS05800 PF02391 MoaE protein RD07_RS05805 PF00994 Probable molybdopterin binding domain RD07_RS05810 PF03453 MoeA N-terminal region (domain I and II) RD07_RS05810 PF03454 MoeA C-terminal region (domain IV) RD07_RS05810 PF00994 Probable molybdopterin binding domain RD07_RS05815 PF04055 Radical SAM superfamily RD07_RS05815 PF06463 Molybdenum Cofactor Synthesis C RD07_RS05835 PF14698 Argininosuccinate lyase C-terminal RD07_RS05835 PF00206 Lyase RD07_RS05840 PF00924 Mechanosensitive ion channel RD07_RS05845 PF00795 Carbon-nitrogen hydrolase RD07_RS05845 PF02540 NAD synthase RD07_RS05850 PF00543 Nitrogen regulatory protein P-II RD07_RS05875 PF03466 LysR substrate binding domain RD07_RS05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS05885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS05890 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS05895 PF12911 N-terminal TM domain of oligopeptide transport permease C RD07_RS05895 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS05900 PF03193 RsgA GTPase RD07_RS05905 PF01435 Peptidase family M48 RD07_RS05910 PF00929 Exonuclease RD07_RS05915 PF03853 YjeF-related protein N-terminus RD07_RS05920 PF07848 PaaX-like protein RD07_RS05920 PF08223 PaaX-like protein C-terminal domain RD07_RS05925 PF05138 Phenylacetic acid catabolic protein RD07_RS05930 PF06243 Phenylacetic acid degradation B RD07_RS05935 PF05138 Phenylacetic acid catabolic protein RD07_RS05940 PF01883 Iron-sulfur cluster assembly protein RD07_RS05945 PF00970 Oxidoreductase FAD-binding domain RD07_RS05945 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS05945 PF00175 Oxidoreductase NAD-binding domain RD07_RS05955 PF00171 Aldehyde dehydrogenase family RD07_RS05960 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS05965 PF03061 Thioesterase superfamily RD07_RS05970 PF14535 AMP-binding enzyme C-terminal domain RD07_RS05970 PF00501 AMP-binding enzyme RD07_RS05975 PF16970 Type-1 fimbrial protein, A RD07_RS05990 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS05995 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD07_RS05995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD07_RS06000 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD07_RS06005 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RD07_RS06005 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RD07_RS06005 PF02769 AIR synthase related protein, C-terminal domain RD07_RS06010 PF13018 Extended Signal Peptide of Type V secretion system RD07_RS06010 PF13332 Hemagglutinin repeat RD07_RS06010 PF05594 Haemagluttinin repeat RD07_RS06010 PF05860 haemagglutination activity domain RD07_RS06035 PF00596 Class II Aldolase and Adducin N-terminal domain RD07_RS06040 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS06045 PF01242 6-pyruvoyl tetrahydropterin synthase RD07_RS06055 PF00472 RF-1 domain RD07_RS06075 PF00701 Dihydrodipicolinate synthetase family RD07_RS06080 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS06105 PF00890 FAD binding domain RD07_RS06105 PF14537 Cytochrome c3 RD07_RS06110 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS06125 PF01266 FAD dependent oxidoreductase RD07_RS06125 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RD07_RS06130 PF08220 DeoR-like helix-turn-helix domain RD07_RS06130 PF00455 DeoR C terminal sensor domain RD07_RS06135 PF00005 ABC transporter RD07_RS06135 PF17912 MalK OB fold domain RD07_RS06140 PF00005 ABC transporter RD07_RS06140 PF17912 MalK OB fold domain RD07_RS06150 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS06175 PF01037 Lrp/AsnC ligand binding domain RD07_RS06180 PF01266 FAD dependent oxidoreductase RD07_RS06185 PF00149 Calcineurin-like phosphoesterase RD07_RS06185 PF12320 Type 5 capsule protein repressor C-terminal domain RD07_RS06210 PF00072 Response regulator receiver domain RD07_RS06210 PF00196 Bacterial regulatory proteins, luxR family RD07_RS06230 PF00571 CBS domain RD07_RS06230 PF00478 IMP dehydrogenase / GMP reductase domain RD07_RS06235 PF02540 NAD synthase RD07_RS06235 PF00117 Glutamine amidotransferase class-I RD07_RS06235 PF00958 GMP synthase C terminal domain RD07_RS06245 PF13657 HipA N-terminal domain RD07_RS06245 PF07804 HipA-like C-terminal domain RD07_RS06255 PF07690 Major Facilitator Superfamily RD07_RS06270 PF01979 Amidohydrolase family RD07_RS06280 PF00005 ABC transporter RD07_RS06285 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS06310 PF01965 DJ-1/PfpI family RD07_RS06315 PF01740 STAS domain RD07_RS06315 PF00916 Sulfate permease family RD07_RS06320 PF00753 Metallo-beta-lactamase superfamily RD07_RS06320 PF10996 Beta-Casp domain RD07_RS06320 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RD07_RS06335 PF12706 Beta-lactamase superfamily domain RD07_RS06340 PF12833 Helix-turn-helix domain RD07_RS06340 PF01965 DJ-1/PfpI family RD07_RS06345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS06345 PF03466 LysR substrate binding domain RD07_RS06360 PF08240 Alcohol dehydrogenase GroES-like domain RD07_RS06360 PF00107 Zinc-binding dehydrogenase RD07_RS06365 PF07690 Major Facilitator Superfamily RD07_RS06370 PF00155 Aminotransferase class I and II RD07_RS06370 PF00392 Bacterial regulatory proteins, gntR family RD07_RS06380 PF01810 LysE type translocator RD07_RS06395 PF07687 Peptidase dimerisation domain RD07_RS06395 PF01546 Peptidase family M20/M25/M40 RD07_RS06400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS06405 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS06410 PF12911 N-terminal TM domain of oligopeptide transport permease C RD07_RS06410 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS06415 PF00005 ABC transporter RD07_RS06415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS06420 PF00356 Bacterial regulatory proteins, lacI family RD07_RS06445 PF09335 SNARE associated Golgi protein RD07_RS06455 PF13847 Methyltransferase domain RD07_RS06470 PF00155 Aminotransferase class I and II RD07_RS06470 PF00392 Bacterial regulatory proteins, gntR family RD07_RS06480 PF00692 dUTPase RD07_RS06490 PF01632 Ribosomal protein L35 RD07_RS06495 PF00453 Ribosomal protein L20 RD07_RS06500 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RD07_RS06500 PF01409 tRNA synthetases class II core domain (F) RD07_RS06505 PF03147 Ferredoxin-fold anticodon binding domain RD07_RS06505 PF03483 B3/4 domain RD07_RS06505 PF01588 Putative tRNA binding domain RD07_RS06505 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RD07_RS06505 PF03484 tRNA synthetase B5 domain RD07_RS06510 PF00216 Bacterial DNA-binding protein RD07_RS06560 PF04231 Endonuclease I RD07_RS06580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD07_RS06580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD07_RS06585 PF04381 Putative exonuclease, RdgC RD07_RS06595 PF02515 CoA-transferase family III RD07_RS06600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS06600 PF03466 LysR substrate binding domain RD07_RS06620 PF00106 short chain dehydrogenase RD07_RS06630 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS06635 PF00005 ABC transporter RD07_RS06635 PF08402 TOBE domain RD07_RS06640 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS06640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD07_RS06640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD07_RS06645 PF08946 Osmosensory transporter coiled coil RD07_RS06645 PF00083 Sugar (and other) transporter RD07_RS06650 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS06655 PF00486 Transcriptional regulatory protein, C terminal RD07_RS06655 PF00072 Response regulator receiver domain RD07_RS06660 PF00154 recA bacterial DNA recombination protein RD07_RS06665 PF02631 RecX family RD07_RS06670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS06670 PF03466 LysR substrate binding domain RD07_RS06675 PF08267 Cobalamin-independent synthase, N-terminal domain RD07_RS06675 PF01717 Cobalamin-independent synthase, Catalytic domain RD07_RS06685 PF00549 CoA-ligase RD07_RS06685 PF08442 ATP-grasp domain RD07_RS06690 PF00549 CoA-ligase RD07_RS06690 PF02629 CoA binding domain RD07_RS06695 PF03741 Integral membrane protein TerC family RD07_RS06700 PF03741 Integral membrane protein TerC family RD07_RS06705 PF03900 Porphobilinogen deaminase, C-terminal domain RD07_RS06705 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RD07_RS06725 PF00719 Inorganic pyrophosphatase RD07_RS06730 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD07_RS06765 PF04972 BON domain RD07_RS06765 PF00263 Bacterial type II and III secretion system protein RD07_RS06765 PF13629 Pilus formation protein N terminal region RD07_RS06770 PF00437 Type II/IV secretion system protein RD07_RS06790 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS06795 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD07_RS06795 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD07_RS06800 PF02615 Malate/L-lactate dehydrogenase RD07_RS06805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS06805 PF03466 LysR substrate binding domain RD07_RS06815 PF01266 FAD dependent oxidoreductase RD07_RS06820 PF04267 Sarcosine oxidase, delta subunit family RD07_RS06825 PF01571 Aminomethyltransferase folate-binding domain RD07_RS06825 PF17806 Sarcosine oxidase A3 domain RD07_RS06825 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD07_RS06825 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS06835 PF00551 Formyl transferase RD07_RS06840 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS06850 PF00561 alpha/beta hydrolase fold RD07_RS06860 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RD07_RS06860 PF01565 FAD binding domain RD07_RS06865 PF01113 Dihydrodipicolinate reductase, N-terminus RD07_RS06865 PF05173 Dihydrodipicolinate reductase, C-terminus RD07_RS06870 PF04355 SmpA / OmlA family RD07_RS06875 PF01475 Ferric uptake regulator family RD07_RS06880 PF02463 RecF/RecN/SMC N terminal domain RD07_RS06885 PF01513 ATP-NAD kinase RD07_RS06890 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RD07_RS06890 PF01628 HrcA protein C terminal domain RD07_RS06895 PF00762 Ferrochelatase RD07_RS06905 PF01025 GrpE RD07_RS06915 PF00012 Hsp70 protein RD07_RS06920 PF01556 DnaJ C terminal domain RD07_RS06920 PF00684 DnaJ central domain RD07_RS06920 PF00226 DnaJ domain RD07_RS06925 PF05193 Peptidase M16 inactive domain RD07_RS06925 PF00675 Insulinase (Peptidase family M16) RD07_RS06945 PF01434 Peptidase family M41 RD07_RS06945 PF17862 AAA+ lid domain RD07_RS06945 PF00004 ATPase family associated with various cellular activities (AAA) RD07_RS06955 PF00034 Cytochrome c RD07_RS06970 PF00180 Isocitrate/isopropylmalate dehydrogenase RD07_RS06995 PF00072 Response regulator receiver domain RD07_RS06995 PF00486 Transcriptional regulatory protein, C terminal RD07_RS07000 PF13493 Domain of unknown function (DUF4118) RD07_RS07000 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS07000 PF13492 GAF domain RD07_RS07000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS07000 PF02702 Osmosensitive K+ channel His kinase sensor domain RD07_RS07005 PF02669 K+-transporting ATPase, c chain RD07_RS07015 PF03814 Potassium-transporting ATPase A subunit RD07_RS07025 PF00474 Sodium:solute symporter family RD07_RS07045 PF00893 Small Multidrug Resistance protein RD07_RS07055 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS07060 PF09397 Ftsk gamma domain RD07_RS07060 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RD07_RS07060 PF17854 FtsK alpha domain RD07_RS07060 PF01580 FtsK/SpoIIIE family RD07_RS07065 PF03548 Outer membrane lipoprotein carrier protein LolA RD07_RS07070 PF12002 MgsA AAA+ ATPase C terminal RD07_RS07070 PF16193 AAA C-terminal domain RD07_RS07070 PF00004 ATPase family associated with various cellular activities (AAA) RD07_RS07075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD07_RS07075 PF02403 Seryl-tRNA synthetase N-terminal domain RD07_RS07100 PF00990 Diguanylate cyclase, GGDEF domain RD07_RS07100 PF17151 Periplasmic sensor domain RD07_RS07115 PF00593 TonB dependent receptor RD07_RS07115 PF07660 Secretin and TonB N terminus short domain RD07_RS07115 PF07715 TonB-dependent Receptor Plug Domain RD07_RS07120 PF07690 Major Facilitator Superfamily RD07_RS07140 PF06276 Ferric iron reductase FhuF-like transporter RD07_RS07140 PF04183 IucA / IucC family RD07_RS07150 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RD07_RS07160 PF00999 Sodium/hydrogen exchanger family RD07_RS07160 PF02254 TrkA-N domain RD07_RS07165 PF00106 short chain dehydrogenase RD07_RS07175 PF03883 Peroxide stress protein YaaA RD07_RS07185 PF12805 FUSC-like inner membrane protein yccS RD07_RS07195 PF00990 Diguanylate cyclase, GGDEF domain RD07_RS07205 PF04055 Radical SAM superfamily RD07_RS07205 PF06969 HemN C-terminal domain RD07_RS07215 PF00196 Bacterial regulatory proteins, luxR family RD07_RS07220 PF03129 Anticodon binding domain RD07_RS07220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD07_RS07220 PF02824 TGS domain RD07_RS07220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD07_RS07225 PF05198 Translation initiation factor IF-3, N-terminal domain RD07_RS07225 PF00707 Translation initiation factor IF-3, C-terminal domain RD07_RS07230 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RD07_RS07230 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RD07_RS07240 PF00381 PTS HPr component phosphorylation site RD07_RS07245 PF05524 PEP-utilising enzyme, N-terminal RD07_RS07245 PF00391 PEP-utilising enzyme, mobile domain RD07_RS07245 PF02896 PEP-utilising enzyme, TIM barrel domain RD07_RS07255 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD07_RS07265 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS07270 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS07275 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS07280 PF00005 ABC transporter RD07_RS07295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD07_RS07295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD07_RS07305 PF02293 AmiS/UreI family transporter RD07_RS07310 PF03069 Acetamidase/Formamidase family RD07_RS07325 PF01116 Fructose-bisphosphate aldolase class-II RD07_RS07335 PF01259 SAICAR synthetase RD07_RS07340 PF15723 Motility quorum-sensing regulator, toxin of MqsA RD07_RS07345 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD07_RS07350 PF02600 Disulfide bond formation protein DsbB RD07_RS07355 PF00731 AIR carboxylase RD07_RS07360 PF02222 ATP-grasp domain RD07_RS07360 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RD07_RS07365 PF01300 Telomere recombination RD07_RS07365 PF03481 Putative GTP-binding controlling metal-binding RD07_RS07370 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS07375 PF01614 Bacterial transcriptional regulator RD07_RS07375 PF09339 IclR helix-turn-helix domain RD07_RS07380 PF00491 Arginase family RD07_RS07385 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS07390 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS07395 PF00005 ABC transporter RD07_RS07400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD07_RS07400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD07_RS07410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS07410 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS07410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS07415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD07_RS07415 PF00205 Thiamine pyrophosphate enzyme, central domain RD07_RS07415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD07_RS07420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS07420 PF03466 LysR substrate binding domain RD07_RS07425 PF00589 Phage integrase family RD07_RS07425 PF02899 Phage integrase, N-terminal SAM-like domain RD07_RS07430 PF04073 Aminoacyl-tRNA editing domain RD07_RS07435 PF01174 SNO glutamine amidotransferase family RD07_RS07450 PF00768 D-alanyl-D-alanine carboxypeptidase RD07_RS07460 PF07690 Major Facilitator Superfamily RD07_RS07470 PF12705 PD-(D/E)XK nuclease superfamily RD07_RS07470 PF00580 UvrD/REP helicase N-terminal domain RD07_RS07470 PF13361 UvrD-like helicase C-terminal domain RD07_RS07480 PF12170 DNA polymerase III tau subunit V interacting with alpha RD07_RS07480 PF12169 DNA polymerase III subunits gamma and tau domain III RD07_RS07480 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RD07_RS07485 PF02575 YbaB/EbfC DNA-binding family RD07_RS07490 PF13662 Toprim domain RD07_RS07490 PF02132 RecR protein RD07_RS07510 PF04228 Putative neutral zinc metallopeptidase RD07_RS07515 PF01300 Telomere recombination RD07_RS07550 PF03358 NADPH-dependent FMN reductase RD07_RS07555 PF07311 Dodecin RD07_RS07560 PF05192 MutS domain III RD07_RS07560 PF05190 MutS family domain IV RD07_RS07560 PF00488 MutS domain V RD07_RS07560 PF05188 MutS domain II RD07_RS07560 PF01624 MutS domain I RD07_RS07565 PF08007 Cupin superfamily protein RD07_RS07575 PF16970 Type-1 fimbrial protein, A RD07_RS07580 PF06804 NlpB/DapX lipoprotein RD07_RS07585 PF00701 Dihydrodipicolinate synthetase family RD07_RS07590 PF02163 Peptidase family M50 RD07_RS07600 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS07605 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS07610 PF00005 ABC transporter RD07_RS07615 PF13291 ACT domain RD07_RS07615 PF04607 Region found in RelA / SpoT proteins RD07_RS07615 PF02824 TGS domain RD07_RS07620 PF01192 RNA polymerase Rpb6 RD07_RS07625 PF00625 Guanylate kinase RD07_RS07630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD07_RS07635 PF00034 Cytochrome c RD07_RS07645 PF00877 NlpC/P60 family RD07_RS07650 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RD07_RS07650 PF01048 Phosphorylase superfamily RD07_RS07670 PF08340 Domain of unknown function (DUF1732) RD07_RS07670 PF03755 YicC-like family, N-terminal region RD07_RS07675 PF01138 3' exoribonuclease family, domain 1 RD07_RS07675 PF03725 3' exoribonuclease family, domain 2 RD07_RS07685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS07685 PF03466 LysR substrate binding domain RD07_RS07690 PF17154 Gammaproteobacterial periplasmic sensor domain RD07_RS07690 PF00563 EAL domain RD07_RS07690 PF00990 Diguanylate cyclase, GGDEF domain RD07_RS07690 PF00672 HAMP domain RD07_RS07695 PF01725 Ham1 family RD07_RS07705 PF06969 HemN C-terminal domain RD07_RS07705 PF04055 Radical SAM superfamily RD07_RS07710 PF03951 Glutamine synthetase, beta-Grasp domain RD07_RS07710 PF00120 Glutamine synthetase, catalytic domain RD07_RS07715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS07715 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS07715 PF00989 PAS fold RD07_RS07720 PF00072 Response regulator receiver domain RD07_RS07720 PF00158 Sigma-54 interaction domain RD07_RS07720 PF02954 Bacterial regulatory protein, Fis family RD07_RS07725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS07725 PF03466 LysR substrate binding domain RD07_RS07730 PF17954 Quercetinase C-terminal cupin domain RD07_RS07730 PF02678 Pirin RD07_RS07735 PF05726 Pirin C-terminal cupin domain RD07_RS07735 PF02678 Pirin RD07_RS07745 PF08402 TOBE domain RD07_RS07745 PF00005 ABC transporter RD07_RS07750 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS07760 PF00175 Oxidoreductase NAD-binding domain RD07_RS07760 PF00970 Oxidoreductase FAD-binding domain RD07_RS07765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS07765 PF03466 LysR substrate binding domain RD07_RS07775 PF00248 Aldo/keto reductase family RD07_RS07785 PF01042 Endoribonuclease L-PSP RD07_RS07790 PF00270 DEAD/DEAH box helicase RD07_RS07790 PF00271 Helicase conserved C-terminal domain RD07_RS07790 PF17191 RecG wedge domain RD07_RS07795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS07795 PF03466 LysR substrate binding domain RD07_RS07800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS07800 PF03466 LysR substrate binding domain RD07_RS07805 PF00171 Aldehyde dehydrogenase family RD07_RS07810 PF00210 Ferritin-like domain RD07_RS07835 PF00005 ABC transporter RD07_RS07845 PF00534 Glycosyl transferases group 1 RD07_RS07855 PF02563 Polysaccharide biosynthesis/export protein RD07_RS07860 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD07_RS07860 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD07_RS07860 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD07_RS07865 PF01370 NAD dependent epimerase/dehydratase family RD07_RS07870 PF05159 Capsule polysaccharide biosynthesis protein RD07_RS07875 PF05159 Capsule polysaccharide biosynthesis protein RD07_RS07885 PF00106 short chain dehydrogenase RD07_RS07900 PF14759 Reductase C-terminal RD07_RS07900 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS07910 PF00005 ABC transporter RD07_RS07915 PF00005 ABC transporter RD07_RS07915 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD07_RS07920 PF11862 Domain of unknown function (DUF3382) RD07_RS07920 PF02653 Branched-chain amino acid transport system / permease component RD07_RS07930 PF03741 Integral membrane protein TerC family RD07_RS07940 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS07955 PF07726 ATPase family associated with various cellular activities (AAA) RD07_RS07955 PF17863 AAA lid domain RD07_RS07985 PF00884 Sulfatase RD07_RS08010 PF00072 Response regulator receiver domain RD07_RS08010 PF00196 Bacterial regulatory proteins, luxR family RD07_RS08015 PF03797 Autotransporter beta-domain RD07_RS08015 PF00082 Subtilase family RD07_RS08015 PF12951 Passenger-associated-transport-repeat RD07_RS08020 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD07_RS08025 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RD07_RS08030 PF00043 Glutathione S-transferase, C-terminal domain RD07_RS08030 PF02798 Glutathione S-transferase, N-terminal domain RD07_RS08035 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD07_RS08045 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS08055 PF01070 FMN-dependent dehydrogenase RD07_RS08060 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD07_RS08075 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS08080 PF03466 LysR substrate binding domain RD07_RS08080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS08085 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS08110 PF03358 NADPH-dependent FMN reductase RD07_RS08135 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS08145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS08145 PF03466 LysR substrate binding domain RD07_RS08160 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS08165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD07_RS08165 PF00361 Proton-conducting membrane transporter RD07_RS08165 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RD07_RS08165 PF13244 Domain of unknown function (DUF4040) RD07_RS08170 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD07_RS08175 PF00361 Proton-conducting membrane transporter RD07_RS08180 PF01899 Na+/H+ ion antiporter subunit RD07_RS08185 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RD07_RS08210 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD07_RS08215 PF02016 LD-carboxypeptidase N-terminal domain RD07_RS08215 PF17676 LD-carboxypeptidase C-terminal domain RD07_RS08220 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS08225 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD07_RS08235 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS08240 PF12848 ABC transporter RD07_RS08240 PF00005 ABC transporter RD07_RS08245 PF00005 ABC transporter RD07_RS08275 PF00175 Oxidoreductase NAD-binding domain RD07_RS08275 PF00970 Oxidoreductase FAD-binding domain RD07_RS08275 PF00042 Globin RD07_RS08280 PF02082 Transcriptional regulator RD07_RS08285 PF01266 FAD dependent oxidoreductase RD07_RS08300 PF01571 Aminomethyltransferase folate-binding domain RD07_RS08305 PF02618 YceG-like family RD07_RS08310 PF02223 Thymidylate kinase RD07_RS08315 PF12169 DNA polymerase III subunits gamma and tau domain III RD07_RS08320 PF01026 TatD related DNase RD07_RS08335 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS08345 PF00005 ABC transporter RD07_RS08350 PF00491 Arginase family RD07_RS08355 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD07_RS08355 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD07_RS08360 PF00171 Aldehyde dehydrogenase family RD07_RS08365 PF07687 Peptidase dimerisation domain RD07_RS08365 PF01546 Peptidase family M20/M25/M40 RD07_RS08370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD07_RS08370 PF00205 Thiamine pyrophosphate enzyme, central domain RD07_RS08370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD07_RS08380 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD07_RS08380 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD07_RS08390 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD07_RS08390 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS08395 PF07729 FCD domain RD07_RS08395 PF00392 Bacterial regulatory proteins, gntR family RD07_RS08405 PF04343 Protein of unknown function, DUF488 RD07_RS08425 PF01425 Amidase RD07_RS08430 PF07286 Protein of unknown function (DUF1445) RD07_RS08440 PF00989 PAS fold RD07_RS08440 PF01627 Hpt domain RD07_RS08440 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS08440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS08440 PF00072 Response regulator receiver domain RD07_RS08440 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS08445 PF00196 Bacterial regulatory proteins, luxR family RD07_RS08445 PF00072 Response regulator receiver domain RD07_RS08455 PF16970 Type-1 fimbrial protein, A RD07_RS08460 PF02753 Pili assembly chaperone PapD, C-terminal domain RD07_RS08460 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RD07_RS08465 PF00577 Outer membrane usher protein RD07_RS08465 PF13953 PapC C-terminal domain RD07_RS08465 PF13954 PapC N-terminal domain RD07_RS08470 PF00419 Fimbrial protein RD07_RS08475 PF17287 POTRA domain RD07_RS08475 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD07_RS08475 PF08479 POTRA domain, ShlB-type RD07_RS08490 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS08515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS08515 PF03466 LysR substrate binding domain RD07_RS08525 PF01968 Hydantoinase/oxoprolinase RD07_RS08525 PF05378 Hydantoinase/oxoprolinase N-terminal region RD07_RS08540 PF05552 Conserved TM helix RD07_RS08540 PF00924 Mechanosensitive ion channel RD07_RS08550 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS08555 PF00588 SpoU rRNA Methylase family RD07_RS08560 PF00459 Inositol monophosphatase family RD07_RS08565 PF03471 Transporter associated domain RD07_RS08565 PF03741 Integral membrane protein TerC family RD07_RS08570 PF02673 Bacitracin resistance protein BacA RD07_RS08575 PF00149 Calcineurin-like phosphoesterase RD07_RS08580 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RD07_RS08590 PF09190 DALR domain RD07_RS08590 PF01406 tRNA synthetases class I (C) catalytic domain RD07_RS08595 PF02805 Metal binding domain of Ada RD07_RS08595 PF06029 AlkA N-terminal domain RD07_RS08595 PF00730 HhH-GPD superfamily base excision DNA repair protein RD07_RS08595 PF12833 Helix-turn-helix domain RD07_RS08600 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RD07_RS08610 PF09179 TilS substrate binding domain RD07_RS08610 PF01171 PP-loop family RD07_RS08615 PF00696 Amino acid kinase family RD07_RS08615 PF01842 ACT domain RD07_RS08615 PF13840 ACT domain RD07_RS08640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD07_RS08640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD07_RS08645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD07_RS08645 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD07_RS08650 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD07_RS08655 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS08660 PF12146 Serine aminopeptidase, S33 RD07_RS08665 PF01958 Domain of unknown function DUF108 RD07_RS08665 PF03447 Homoserine dehydrogenase, NAD binding domain RD07_RS08680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS08680 PF03466 LysR substrate binding domain RD07_RS08700 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS08705 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS08710 PF08402 TOBE domain RD07_RS08710 PF00005 ABC transporter RD07_RS08720 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS08720 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD07_RS08725 PF09339 IclR helix-turn-helix domain RD07_RS08725 PF01614 Bacterial transcriptional regulator RD07_RS08730 PF13380 CoA binding domain RD07_RS08735 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS08740 PF01042 Endoribonuclease L-PSP RD07_RS08765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD07_RS08775 PF00535 Glycosyl transferase family 2 RD07_RS08780 PF01522 Polysaccharide deacetylase RD07_RS08780 PF14883 Hypothetical glycosyl hydrolase family 13 RD07_RS08800 PF12802 MarR family RD07_RS08815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD07_RS08815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD07_RS08815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD07_RS08815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD07_RS08820 PF00342 Phosphoglucose isomerase RD07_RS08825 PF00132 Bacterial transferase hexapeptide (six repeats) RD07_RS08835 PF02146 Sir2 family RD07_RS08840 PF00459 Inositol monophosphatase family RD07_RS08845 PF00171 Aldehyde dehydrogenase family RD07_RS08850 PF00202 Aminotransferase class-III RD07_RS08855 PF00392 Bacterial regulatory proteins, gntR family RD07_RS08855 PF00155 Aminotransferase class I and II RD07_RS08865 PF00580 UvrD/REP helicase N-terminal domain RD07_RS08865 PF13361 UvrD-like helicase C-terminal domain RD07_RS08870 PF01544 CorA-like Mg2+ transporter protein RD07_RS08880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS08885 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS08890 PF12911 N-terminal TM domain of oligopeptide transport permease C RD07_RS08890 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS08895 PF00005 ABC transporter RD07_RS08895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS08900 PF01047 MarR family RD07_RS08915 PF08479 POTRA domain, ShlB-type RD07_RS08915 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD07_RS08920 PF00563 EAL domain RD07_RS08920 PF00990 Diguanylate cyclase, GGDEF domain RD07_RS08920 PF03707 Bacterial signalling protein N terminal repeat RD07_RS08950 PF13629 Pilus formation protein N terminal region RD07_RS08950 PF00263 Bacterial type II and III secretion system protein RD07_RS08950 PF04972 BON domain RD07_RS08960 PF00437 Type II/IV secretion system protein RD07_RS08990 PF00158 Sigma-54 interaction domain RD07_RS08990 PF02954 Bacterial regulatory protein, Fis family RD07_RS08990 PF00072 Response regulator receiver domain RD07_RS09005 PF08281 Sigma-70, region 4 RD07_RS09005 PF04542 Sigma-70 region 2 RD07_RS09015 PF00034 Cytochrome c RD07_RS09020 PF09285 Elongation factor P, C-terminal RD07_RS09020 PF08207 Elongation factor P (EF-P) KOW-like domain RD07_RS09020 PF01132 Elongation factor P (EF-P) OB domain RD07_RS09035 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RD07_RS09040 PF00694 Aconitase C-terminal domain RD07_RS09040 PF00330 Aconitase family (aconitate hydratase) RD07_RS09050 PF07715 TonB-dependent Receptor Plug Domain RD07_RS09050 PF00593 TonB dependent receptor RD07_RS09065 PF00691 OmpA family RD07_RS09075 PF11791 Aconitate B N-terminal domain RD07_RS09075 PF06434 Aconitate hydratase 2 N-terminus RD07_RS09075 PF00330 Aconitase family (aconitate hydratase) RD07_RS09100 PF00892 EamA-like transporter family RD07_RS09105 PF01925 Sulfite exporter TauE/SafE RD07_RS09120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS09120 PF03466 LysR substrate binding domain RD07_RS09125 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RD07_RS09125 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RD07_RS09135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS09135 PF03466 LysR substrate binding domain RD07_RS09180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD07_RS09180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD07_RS09185 PF01425 Amidase RD07_RS09195 PF00171 Aldehyde dehydrogenase family RD07_RS09210 PF09334 tRNA synthetases class I (M) RD07_RS09210 PF08264 Anticodon-binding domain of tRNA RD07_RS09210 PF00133 tRNA synthetases class I (I, L, M and V) RD07_RS09210 PF13603 Leucyl-tRNA synthetase, Domain 2 RD07_RS09215 PF07690 Major Facilitator Superfamily RD07_RS09220 PF01047 MarR family RD07_RS09240 PF00916 Sulfate permease family RD07_RS09240 PF01740 STAS domain RD07_RS09245 PF00471 Ribosomal protein L33 RD07_RS09250 PF00830 Ribosomal L28 family RD07_RS09255 PF07690 Major Facilitator Superfamily RD07_RS09275 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS09280 PF00005 ABC transporter RD07_RS09280 PF00571 CBS domain RD07_RS09285 PF01361 Tautomerase enzyme RD07_RS09290 PF00108 Thiolase, N-terminal domain RD07_RS09290 PF02803 Thiolase, C-terminal domain RD07_RS09300 PF00392 Bacterial regulatory proteins, gntR family RD07_RS09300 PF07729 FCD domain RD07_RS09310 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS09320 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS09325 PF00080 Copper/zinc superoxide dismutase (SODC) RD07_RS09340 PF00005 ABC transporter RD07_RS09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS09345 PF03459 TOBE domain RD07_RS09365 PF00529 HlyD membrane-fusion protein of T1SS RD07_RS09365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD07_RS09370 PF00873 AcrB/AcrD/AcrF family RD07_RS09375 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RD07_RS09375 PF02321 Outer membrane efflux protein RD07_RS09380 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RD07_RS09385 PF01648 4'-phosphopantetheinyl transferase superfamily RD07_RS09390 PF00933 Glycosyl hydrolase family 3 N terminal domain RD07_RS09395 PF01541 GIY-YIG catalytic domain RD07_RS09395 PF02151 UvrB/uvrC motif RD07_RS09395 PF08459 UvrC Helix-hairpin-helix N-terminal RD07_RS09400 PF01066 CDP-alcohol phosphatidyltransferase RD07_RS09415 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RD07_RS09415 PF14489 QueF-like protein RD07_RS09420 PF00463 Isocitrate lyase family RD07_RS09435 PF02653 Branched-chain amino acid transport system / permease component RD07_RS09435 PF11862 Domain of unknown function (DUF3382) RD07_RS09440 PF02653 Branched-chain amino acid transport system / permease component RD07_RS09445 PF13458 Periplasmic binding protein RD07_RS09450 PF00355 Rieske [2Fe-2S] domain RD07_RS09450 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD07_RS09455 PF00866 Ring hydroxylating beta subunit RD07_RS09460 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS09470 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS09475 PF02515 CoA-transferase family III RD07_RS09480 PF07859 alpha/beta hydrolase fold RD07_RS09485 PF14535 AMP-binding enzyme C-terminal domain RD07_RS09485 PF00501 AMP-binding enzyme RD07_RS09490 PF02803 Thiolase, C-terminal domain RD07_RS09490 PF00108 Thiolase, N-terminal domain RD07_RS09500 PF12228 Protein of unknown function (DUF3604) RD07_RS09505 PF03466 LysR substrate binding domain RD07_RS09505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS09510 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS09535 PF01152 Bacterial-like globin RD07_RS09570 PF01425 Amidase RD07_RS09575 PF01425 Amidase RD07_RS09585 PF01522 Polysaccharide deacetylase RD07_RS09590 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS09615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD07_RS09615 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS09640 PF03466 LysR substrate binding domain RD07_RS09640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS09650 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS09650 PF01799 [2Fe-2S] binding domain RD07_RS09655 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD07_RS09665 PF12833 Helix-turn-helix domain RD07_RS09665 PF06719 AraC-type transcriptional regulator N-terminus RD07_RS09685 PF07690 Major Facilitator Superfamily RD07_RS09700 PF00583 Acetyltransferase (GNAT) family RD07_RS09710 PF00005 ABC transporter RD07_RS09710 PF00664 ABC transporter transmembrane region RD07_RS09720 PF02535 ZIP Zinc transporter RD07_RS09735 PF00916 Sulfate permease family RD07_RS09735 PF01740 STAS domain RD07_RS09755 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD07_RS09755 PF03625 Domain of unknown function DUF302 RD07_RS09765 PF12833 Helix-turn-helix domain RD07_RS09765 PF02805 Metal binding domain of Ada RD07_RS09770 PF07237 Protein of unknown function (DUF1428) RD07_RS09775 PF02567 Phenazine biosynthesis-like protein RD07_RS09780 PF03466 LysR substrate binding domain RD07_RS09780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS09785 PF04286 Protein of unknown function (DUF445) RD07_RS09800 PF00171 Aldehyde dehydrogenase family RD07_RS09805 PF02954 Bacterial regulatory protein, Fis family RD07_RS09805 PF00158 Sigma-54 interaction domain RD07_RS09805 PF01590 GAF domain RD07_RS09820 PF04172 LrgB-like family RD07_RS09825 PF03788 LrgA family RD07_RS09830 PF13649 Methyltransferase domain RD07_RS09840 PF00155 Aminotransferase class I and II RD07_RS09845 PF00202 Aminotransferase class-III RD07_RS09880 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RD07_RS09880 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD07_RS09885 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RD07_RS09885 PF12801 4Fe-4S binding domain RD07_RS09885 PF13746 4Fe-4S dicluster domain RD07_RS09910 PF00005 ABC transporter RD07_RS09915 PF01061 ABC-2 type transporter RD07_RS09920 PF01594 AI-2E family transporter RD07_RS09950 PF04542 Sigma-70 region 2 RD07_RS09950 PF04546 Sigma-70, non-essential region RD07_RS09950 PF03979 Sigma-70 factor, region 1.1 RD07_RS09950 PF00140 Sigma-70 factor, region 1.2 RD07_RS09950 PF04539 Sigma-70 region 3 RD07_RS09950 PF04545 Sigma-70, region 4 RD07_RS09955 PF01807 CHC2 zinc finger RD07_RS09955 PF08275 DNA primase catalytic core, N-terminal domain RD07_RS09955 PF08278 DNA primase DnaG DnaB-binding RD07_RS09955 PF10410 DnaB-helicase binding domain of primase RD07_RS09960 PF01165 Ribosomal protein S21 RD07_RS09965 PF00156 Phosphoribosyl transferase domain RD07_RS09970 PF00709 Adenylosuccinate synthetase RD07_RS09975 PF13393 Histidyl-tRNA synthetase RD07_RS09980 PF01145 SPFH domain / Band 7 family RD07_RS09985 PF01145 SPFH domain / Band 7 family RD07_RS09985 PF12221 Bacterial membrane protein N terminal RD07_RS09990 PF01926 50S ribosome-binding GTPase RD07_RS09990 PF13167 GTP-binding GTPase N-terminal RD07_RS09990 PF16360 GTP-binding GTPase Middle Region RD07_RS09995 PF17209 Hfq protein RD07_RS10000 PF00155 Aminotransferase class I and II RD07_RS10005 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RD07_RS10005 PF01926 50S ribosome-binding GTPase RD07_RS10010 PF13360 PQQ-like domain RD07_RS10015 PF09976 Tetratricopeptide repeat-like domain RD07_RS10020 PF13393 Histidyl-tRNA synthetase RD07_RS10020 PF03129 Anticodon binding domain RD07_RS10025 PF04551 GcpE protein RD07_RS10035 PF04055 Radical SAM superfamily RD07_RS10040 PF00334 Nucleoside diphosphate kinase RD07_RS10045 PF08264 Anticodon-binding domain of tRNA RD07_RS10045 PF00133 tRNA synthetases class I (I, L, M and V) RD07_RS10045 PF10458 Valyl tRNA synthetase tRNA binding arm RD07_RS10055 PF00486 Transcriptional regulatory protein, C terminal RD07_RS10055 PF00072 Response regulator receiver domain RD07_RS10060 PF08521 Two-component sensor kinase N-terminal RD07_RS10060 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS10060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS10080 PF00266 Aminotransferase class-V RD07_RS10085 PF01746 tRNA (Guanine-1)-methyltransferase RD07_RS10090 PF01782 RimM N-terminal domain RD07_RS10095 PF00886 Ribosomal protein S16 RD07_RS10105 PF01206 Sulfurtransferase TusA RD07_RS10110 PF02272 DHHA1 domain RD07_RS10110 PF01411 tRNA synthetases class II (A) RD07_RS10110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD07_RS10155 PF01425 Amidase RD07_RS10160 PF00005 ABC transporter RD07_RS10160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS10165 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS10170 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS10175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS10190 PF03466 LysR substrate binding domain RD07_RS10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS10195 PF13416 Bacterial extracellular solute-binding protein RD07_RS10200 PF01266 FAD dependent oxidoreductase RD07_RS10205 PF00970 Oxidoreductase FAD-binding domain RD07_RS10205 PF00175 Oxidoreductase NAD-binding domain RD07_RS10205 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS10210 PF02261 Aspartate decarboxylase RD07_RS10225 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD07_RS10230 PF07005 Sugar-binding N-terminal domain RD07_RS10230 PF17042 Nucleotide-binding C-terminal domain RD07_RS10235 PF03812 2-keto-3-deoxygluconate permease RD07_RS10245 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS10255 PF02142 MGS-like domain RD07_RS10260 PF04384 Iron-sulphur cluster assembly RD07_RS10265 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS10270 PF00012 Hsp70 protein RD07_RS10275 PF07743 HSCB C-terminal oligomerisation domain RD07_RS10280 PF01521 Iron-sulphur cluster biosynthesis RD07_RS10285 PF01592 NifU-like N terminal domain RD07_RS10290 PF00266 Aminotransferase class-V RD07_RS10295 PF02082 Transcriptional regulator RD07_RS10300 PF01451 Low molecular weight phosphotyrosine protein phosphatase RD07_RS10305 PF00271 Helicase conserved C-terminal domain RD07_RS10305 PF02151 UvrB/uvrC motif RD07_RS10305 PF12344 Ultra-violet resistance protein B RD07_RS10305 PF17757 UvrB interaction domain RD07_RS10305 PF04851 Type III restriction enzyme, res subunit RD07_RS10310 PF00155 Aminotransferase class I and II RD07_RS10315 PF00717 Peptidase S24-like RD07_RS10315 PF01726 LexA DNA binding domain RD07_RS10320 PF03212 Pertactin RD07_RS10320 PF03797 Autotransporter beta-domain RD07_RS10340 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS10345 PF01144 Coenzyme A transferase RD07_RS10350 PF01144 Coenzyme A transferase RD07_RS10360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS10360 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS10360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS10370 PF02803 Thiolase, C-terminal domain RD07_RS10370 PF00108 Thiolase, N-terminal domain RD07_RS10380 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS10385 PF01575 MaoC like domain RD07_RS10390 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS10395 PF02515 CoA-transferase family III RD07_RS10400 PF03466 LysR substrate binding domain RD07_RS10400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS10405 PF00004 ATPase family associated with various cellular activities (AAA) RD07_RS10405 PF05362 Lon protease (S16) C-terminal proteolytic domain RD07_RS10405 PF02190 ATP-dependent protease La (LON) substrate-binding domain RD07_RS10410 PF10431 C-terminal, D2-small domain, of ClpB protein RD07_RS10410 PF06689 ClpX C4-type zinc finger RD07_RS10410 PF07724 AAA domain (Cdc48 subfamily) RD07_RS10415 PF00574 Clp protease RD07_RS10420 PF05697 Bacterial trigger factor protein (TF) RD07_RS10420 PF05698 Bacterial trigger factor protein (TF) C-terminus RD07_RS10420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD07_RS10425 PF03350 Uncharacterized protein family, UPF0114 RD07_RS10430 PF00313 'Cold-shock' DNA-binding domain RD07_RS10440 PF00313 'Cold-shock' DNA-binding domain RD07_RS10475 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RD07_RS10475 PF14602 Hexapeptide repeat of succinyl-transferase RD07_RS10475 PF00132 Bacterial transferase hexapeptide (six repeats) RD07_RS10480 PF01546 Peptidase family M20/M25/M40 RD07_RS10480 PF07687 Peptidase dimerisation domain RD07_RS10485 PF05175 Methyltransferase small domain RD07_RS10490 PF00005 ABC transporter RD07_RS10490 PF12848 ABC transporter RD07_RS10495 PF07715 TonB-dependent Receptor Plug Domain RD07_RS10500 PF13361 UvrD-like helicase C-terminal domain RD07_RS10500 PF00580 UvrD/REP helicase N-terminal domain RD07_RS10520 PF01189 16S rRNA methyltransferase RsmB/F RD07_RS10520 PF01029 NusB family RD07_RS10525 PF01687 Riboflavin kinase RD07_RS10525 PF06574 FAD synthetase RD07_RS10530 PF08264 Anticodon-binding domain of tRNA RD07_RS10530 PF00133 tRNA synthetases class I (I, L, M and V) RD07_RS10530 PF06827 Zinc finger found in FPG and IleRS RD07_RS10535 PF01252 Signal peptidase (SPase) II RD07_RS10540 PF02441 Flavoprotein RD07_RS10540 PF04127 DNA / pantothenate metabolism flavoprotein RD07_RS10550 PF01037 Lrp/AsnC ligand binding domain RD07_RS10565 PF13406 Transglycosylase SLT domain RD07_RS10570 PF04305 Protein of unknown function (DUF455) RD07_RS10590 PF02875 Mur ligase family, glutamate ligase domain RD07_RS10590 PF08245 Mur ligase middle domain RD07_RS10590 PF08443 RimK-like ATP-grasp domain RD07_RS10595 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD07_RS10595 PF02875 Mur ligase family, glutamate ligase domain RD07_RS10595 PF08245 Mur ligase middle domain RD07_RS10600 PF05532 CsbD-like RD07_RS10610 PF04972 BON domain RD07_RS10620 PF00005 ABC transporter RD07_RS10625 PF13472 GDSL-like Lipase/Acylhydrolase family RD07_RS10630 PF13145 PPIC-type PPIASE domain RD07_RS10635 PF03009 Glycerophosphoryl diester phosphodiesterase family RD07_RS10640 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RD07_RS10645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD07_RS10645 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS10650 PF00462 Glutaredoxin RD07_RS10650 PF08534 Redoxin RD07_RS10660 PF09278 MerR, DNA binding RD07_RS10660 PF00376 MerR family regulatory protein RD07_RS10665 PF05958 tRNA (Uracil-5-)-methyltransferase RD07_RS10685 PF01476 LysM domain RD07_RS10685 PF01551 Peptidase family M23 RD07_RS10695 PF01975 Survival protein SurE RD07_RS10700 PF02660 Glycerol-3-phosphate acyltransferase RD07_RS10710 PF00814 Glycoprotease family RD07_RS10715 PF00860 Permease family RD07_RS10725 PF00085 Thioredoxin RD07_RS10730 PF01205 Uncharacterized protein family UPF0029 RD07_RS10740 PF00583 Acetyltransferase (GNAT) family RD07_RS10745 PF12802 MarR family RD07_RS10755 PF00202 Aminotransferase class-III RD07_RS10760 PF16868 NMT1-like family RD07_RS10780 PF03797 Autotransporter beta-domain RD07_RS10790 PF13091 PLD-like domain RD07_RS10790 PF13396 Phospholipase_D-nuclease N-terminal RD07_RS10795 PF01740 STAS domain RD07_RS10800 PF13581 Histidine kinase-like ATPase domain RD07_RS10805 PF01168 Alanine racemase, N-terminal domain RD07_RS10805 PF00842 Alanine racemase, C-terminal domain RD07_RS10815 PF00672 HAMP domain RD07_RS10815 PF07228 Stage II sporulation protein E (SpoIIE) RD07_RS10840 PF04542 Sigma-70 region 2 RD07_RS10840 PF08281 Sigma-70, region 4 RD07_RS10845 PF03958 Bacterial type II/III secretion system short domain RD07_RS10845 PF00263 Bacterial type II and III secretion system protein RD07_RS10855 PF01312 FlhB HrpN YscU SpaS Family RD07_RS10860 PF01311 Bacterial export proteins, family 1 RD07_RS10865 PF01313 Bacterial export proteins, family 3 RD07_RS10870 PF00813 FliP family RD07_RS10875 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD07_RS10890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD07_RS10890 PF18269 T3SS EscN ATPase C-terminal domain RD07_RS10890 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD07_RS10895 PF02108 Flagellar assembly protein FliH RD07_RS10905 PF01514 Secretory protein of YscJ/FliF family RD07_RS10970 PF00771 FHIPEP family RD07_RS11000 PF01272 Transcription elongation factor, GreA/GreB, C-term RD07_RS11000 PF03449 Transcription elongation factor, N-terminal RD07_RS11005 PF00672 HAMP domain RD07_RS11005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD07_RS11005 PF02203 Tar ligand binding domain homologue RD07_RS11010 PF00860 Permease family RD07_RS11030 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS11040 PF13419 Haloacid dehalogenase-like hydrolase RD07_RS11045 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS11050 PF00005 ABC transporter RD07_RS11050 PF08402 TOBE domain RD07_RS11055 PF03466 LysR substrate binding domain RD07_RS11055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS11065 PF00581 Rhodanese-like domain RD07_RS11075 PF01435 Peptidase family M48 RD07_RS11080 PF08240 Alcohol dehydrogenase GroES-like domain RD07_RS11080 PF00107 Zinc-binding dehydrogenase RD07_RS11085 PF00892 EamA-like transporter family RD07_RS11095 PF01047 MarR family RD07_RS11105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD07_RS11105 PF00529 HlyD membrane-fusion protein of T1SS RD07_RS11110 PF07690 Major Facilitator Superfamily RD07_RS11115 PF00180 Isocitrate/isopropylmalate dehydrogenase RD07_RS11120 PF00392 Bacterial regulatory proteins, gntR family RD07_RS11120 PF00155 Aminotransferase class I and II RD07_RS11125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS11130 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS11135 PF12911 N-terminal TM domain of oligopeptide transport permease C RD07_RS11135 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS11140 PF00005 ABC transporter RD07_RS11140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS11150 PF00202 Aminotransferase class-III RD07_RS11155 PF07883 Cupin domain RD07_RS11160 PF00850 Histone deacetylase domain RD07_RS11165 PF01546 Peptidase family M20/M25/M40 RD07_RS11165 PF07687 Peptidase dimerisation domain RD07_RS11175 PF00171 Aldehyde dehydrogenase family RD07_RS11180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD07_RS11185 PF00202 Aminotransferase class-III RD07_RS11190 PF01235 Sodium:alanine symporter family RD07_RS11195 PF05872 Bacterial protein of unknown function (DUF853) RD07_RS11200 PF01709 Transcriptional regulator RD07_RS11205 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RD07_RS11205 PF02843 Phosphoribosylglycinamide synthetase, C domain RD07_RS11205 PF02844 Phosphoribosylglycinamide synthetase, N domain RD07_RS11210 PF01218 Coproporphyrinogen III oxidase RD07_RS11215 PF01467 Cytidylyltransferase-like RD07_RS11225 PF02590 Predicted SPOUT methyltransferase RD07_RS11230 PF02545 Maf-like protein RD07_RS11235 PF03797 Autotransporter beta-domain RD07_RS11235 PF03212 Pertactin RD07_RS11275 PF00575 S1 RNA binding domain RD07_RS11275 PF10150 Ribonuclease E/G family RD07_RS11280 PF01842 ACT domain RD07_RS11280 PF00800 Prephenate dehydratase RD07_RS11290 PF07690 Major Facilitator Superfamily RD07_RS11295 PF00664 ABC transporter transmembrane region RD07_RS11295 PF00005 ABC transporter RD07_RS11300 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD07_RS11310 PF03692 Putative zinc- or iron-chelating domain RD07_RS11325 PF00884 Sulfatase RD07_RS11330 PF13439 Glycosyltransferase Family 4 RD07_RS11330 PF00534 Glycosyl transferases group 1 RD07_RS11335 PF00535 Glycosyl transferase family 2 RD07_RS11340 PF01522 Polysaccharide deacetylase RD07_RS11345 PF00534 Glycosyl transferases group 1 RD07_RS11345 PF13439 Glycosyltransferase Family 4 RD07_RS11350 PF14579 Helix-hairpin-helix motif RD07_RS11350 PF02811 PHP domain RD07_RS11350 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RD07_RS11350 PF01336 OB-fold nucleic acid binding domain RD07_RS11350 PF07733 Bacterial DNA polymerase III alpha NTPase domain RD07_RS11360 PF00271 Helicase conserved C-terminal domain RD07_RS11360 PF04408 Helicase associated domain (HA2) RD07_RS11360 PF11898 Domain of unknown function (DUF3418) RD07_RS11360 PF00270 DEAD/DEAH box helicase RD07_RS11360 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RD07_RS11365 PF00696 Amino acid kinase family RD07_RS11365 PF00583 Acetyltransferase (GNAT) family RD07_RS11370 PF04362 Bacterial Fe(2+) trafficking RD07_RS11375 PF04185 Phosphoesterase family RD07_RS11375 PF05506 Domain of unknown function (DUF756) RD07_RS11380 PF01895 PhoU domain RD07_RS11385 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RD07_RS11390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS11390 PF18158 Adaptive response protein AidB N-terminal domain RD07_RS11390 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS11395 PF02646 RmuC family RD07_RS11405 PF02245 Methylpurine-DNA glycosylase (MPG) RD07_RS11415 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS11420 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS11425 PF08402 TOBE domain RD07_RS11425 PF00005 ABC transporter RD07_RS11430 PF13416 Bacterial extracellular solute-binding protein RD07_RS11450 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS11460 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD07_RS11460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD07_RS11480 PF00285 Citrate synthase, C-terminal domain RD07_RS11485 PF03937 Flavinator of succinate dehydrogenase RD07_RS11490 PF13085 2Fe-2S iron-sulfur cluster binding domain RD07_RS11495 PF00890 FAD binding domain RD07_RS11495 PF02910 Fumarate reductase flavoprotein C-term RD07_RS11500 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD07_RS11505 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD07_RS11510 PF07702 UTRA domain RD07_RS11510 PF00392 Bacterial regulatory proteins, gntR family RD07_RS11515 PF00056 lactate/malate dehydrogenase, NAD binding domain RD07_RS11515 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RD07_RS11525 PF00285 Citrate synthase, C-terminal domain RD07_RS11530 PF00330 Aconitase family (aconitate hydratase) RD07_RS11530 PF00694 Aconitase C-terminal domain RD07_RS11535 PF04303 PrpF protein RD07_RS11540 PF03972 MmgE/PrpD family RD07_RS11545 PF03653 Uncharacterised protein family (UPF0093) RD07_RS11550 PF02926 THUMP domain RD07_RS11550 PF01170 Putative RNA methylase family UPF0020 RD07_RS11570 PF13193 AMP-binding enzyme C-terminal domain RD07_RS11570 PF00501 AMP-binding enzyme RD07_RS11570 PF16177 Acetyl-coenzyme A synthetase N-terminus RD07_RS11580 PF01430 Hsp33 protein RD07_RS11605 PF00211 Adenylate and Guanylate cyclase catalytic domain RD07_RS11610 PF04977 Septum formation initiator RD07_RS11615 PF03952 Enolase, N-terminal domain RD07_RS11615 PF00113 Enolase, C-terminal TIM barrel domain RD07_RS11625 PF00793 DAHP synthetase I family RD07_RS11630 PF00117 Glutamine amidotransferase class-I RD07_RS11630 PF06418 CTP synthase N-terminus RD07_RS11640 PF01321 Creatinase/Prolidase N-terminal domain RD07_RS11640 PF00557 Metallopeptidase family M24 RD07_RS11650 PF03576 Peptidase family S58 RD07_RS11655 PF12911 N-terminal TM domain of oligopeptide transport permease C RD07_RS11655 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS11660 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS11665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS11670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS11670 PF00005 ABC transporter RD07_RS11675 PF01112 Asparaginase RD07_RS11685 PF01144 Coenzyme A transferase RD07_RS11705 PF16363 GDP-mannose 4,6 dehydratase RD07_RS11720 PF01212 Beta-eliminating lyase RD07_RS11725 PF00892 EamA-like transporter family RD07_RS11730 PF16177 Acetyl-coenzyme A synthetase N-terminus RD07_RS11730 PF00501 AMP-binding enzyme RD07_RS11730 PF13193 AMP-binding enzyme C-terminal domain RD07_RS11740 PF03928 Haem-degrading RD07_RS11745 PF16177 Acetyl-coenzyme A synthetase N-terminus RD07_RS11745 PF13193 AMP-binding enzyme C-terminal domain RD07_RS11745 PF00501 AMP-binding enzyme RD07_RS11750 PF00877 NlpC/P60 family RD07_RS11765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS11765 PF03466 LysR substrate binding domain RD07_RS11770 PF00171 Aldehyde dehydrogenase family RD07_RS11780 PF03466 LysR substrate binding domain RD07_RS11780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS11790 PF00883 Cytosol aminopeptidase family, catalytic domain RD07_RS11790 PF02789 Cytosol aminopeptidase family, N-terminal domain RD07_RS11795 PF04364 DNA polymerase III chi subunit, HolC RD07_RS11805 PF01027 Inhibitor of apoptosis-promoting Bax1 RD07_RS11810 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS11825 PF00291 Pyridoxal-phosphate dependent enzyme RD07_RS11835 PF02565 Recombination protein O C terminal RD07_RS11835 PF11967 Recombination protein O N terminal RD07_RS11840 PF01926 50S ribosome-binding GTPase RD07_RS11840 PF07650 KH domain RD07_RS11845 PF14622 Ribonuclease-III-like RD07_RS11845 PF00035 Double-stranded RNA binding motif RD07_RS11850 PF10502 Signal peptidase, peptidase S26 RD07_RS11855 PF00679 Elongation factor G C-terminus RD07_RS11855 PF00009 Elongation factor Tu GTP binding domain RD07_RS11855 PF06421 GTP-binding protein LepA C-terminus RD07_RS11855 PF03144 Elongation factor Tu domain 2 RD07_RS11860 PF13180 PDZ domain RD07_RS11875 PF08281 Sigma-70, region 4 RD07_RS11875 PF04542 Sigma-70 region 2 RD07_RS11885 PF02801 Beta-ketoacyl synthase, C-terminal domain RD07_RS11885 PF00109 Beta-ketoacyl synthase, N-terminal domain RD07_RS11890 PF00550 Phosphopantetheine attachment site RD07_RS11900 PF00698 Acyl transferase domain RD07_RS11905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD07_RS11905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD07_RS11910 PF02504 Fatty acid synthesis protein RD07_RS11915 PF01783 Ribosomal L32p protein family RD07_RS11920 PF02620 Large ribosomal RNA subunit accumulation protein YceD RD07_RS11925 PF02545 Maf-like protein RD07_RS11935 PF01510 N-acetylmuramoyl-L-alanine amidase RD07_RS11940 PF12805 FUSC-like inner membrane protein yccS RD07_RS11950 PF03883 Peroxide stress protein YaaA RD07_RS11965 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RD07_RS11970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD07_RS11980 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS11985 PF01416 tRNA pseudouridine synthase RD07_RS11995 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD07_RS11995 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD07_RS12000 PF00180 Isocitrate/isopropylmalate dehydrogenase RD07_RS12005 PF00694 Aconitase C-terminal domain RD07_RS12010 PF00330 Aconitase family (aconitate hydratase) RD07_RS12015 PF12849 PBP superfamily domain RD07_RS12020 PF00005 ABC transporter RD07_RS12025 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS12050 PF13247 4Fe-4S dicluster domain RD07_RS12055 PF01568 Molydopterin dinucleotide binding domain RD07_RS12055 PF00384 Molybdopterin oxidoreductase RD07_RS12055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RD07_RS12085 PF10609 NUBPL iron-transfer P-loop NTPase RD07_RS12090 PF12804 MobA-like NTP transferase domain RD07_RS12095 PF03453 MoeA N-terminal region (domain I and II) RD07_RS12095 PF00994 Probable molybdopterin binding domain RD07_RS12095 PF03454 MoeA C-terminal region (domain IV) RD07_RS12100 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RD07_RS12105 PF01435 Peptidase family M48 RD07_RS12110 PF01264 Chorismate synthase RD07_RS12115 PF08448 PAS fold RD07_RS12115 PF00563 EAL domain RD07_RS12115 PF00990 Diguanylate cyclase, GGDEF domain RD07_RS12115 PF08447 PAS fold RD07_RS12130 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS12135 PF08402 TOBE domain RD07_RS12135 PF00005 ABC transporter RD07_RS12140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS12140 PF03466 LysR substrate binding domain RD07_RS12145 PF00300 Histidine phosphatase superfamily (branch 1) RD07_RS12155 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RD07_RS12155 PF02142 MGS-like domain RD07_RS12155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD07_RS12160 PF00117 Glutamine amidotransferase class-I RD07_RS12160 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RD07_RS12165 PF00923 Transaldolase/Fructose-6-phosphate aldolase RD07_RS12190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD07_RS12190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD07_RS12195 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS12200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS12200 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS12200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS12205 PF03658 RnfH family Ubiquitin RD07_RS12210 PF03364 Polyketide cyclase / dehydrase and lipid transport RD07_RS12220 PF01668 SmpB protein RD07_RS12225 PF00990 Diguanylate cyclase, GGDEF domain RD07_RS12225 PF08448 PAS fold RD07_RS12230 PF01145 SPFH domain / Band 7 family RD07_RS12230 PF16200 C-terminal region of band_7 RD07_RS12245 PF00117 Glutamine amidotransferase class-I RD07_RS12245 PF00958 GMP synthase C terminal domain RD07_RS12250 PF02896 PEP-utilising enzyme, TIM barrel domain RD07_RS12250 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RD07_RS12250 PF00391 PEP-utilising enzyme, mobile domain RD07_RS12255 PF03618 Kinase/pyrophosphorylase RD07_RS12260 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD07_RS12260 PF00588 SpoU rRNA Methylase family RD07_RS12265 PF01351 Ribonuclease HII RD07_RS12270 PF02684 Lipid-A-disaccharide synthetase RD07_RS12275 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RD07_RS12275 PF00132 Bacterial transferase hexapeptide (six repeats) RD07_RS12280 PF07977 FabA-like domain RD07_RS12285 PF00132 Bacterial transferase hexapeptide (six repeats) RD07_RS12285 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RD07_RS12290 PF03938 Outer membrane protein (OmpH-like) RD07_RS12295 PF07244 Surface antigen variable number repeat RD07_RS12295 PF01103 Surface antigen RD07_RS12300 PF17820 PDZ domain RD07_RS12300 PF02163 Peptidase family M50 RD07_RS12305 PF13288 DXP reductoisomerase C-terminal domain RD07_RS12305 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RD07_RS12305 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RD07_RS12315 PF01255 Putative undecaprenyl diphosphate synthase RD07_RS12320 PF01765 Ribosome recycling factor RD07_RS12325 PF00696 Amino acid kinase family RD07_RS12330 PF00889 Elongation factor TS RD07_RS12335 PF00318 Ribosomal protein S2 RD07_RS12340 PF00557 Metallopeptidase family M24 RD07_RS12345 PF01909 Nucleotidyltransferase domain RD07_RS12345 PF01966 HD domain RD07_RS12345 PF08335 GlnD PII-uridylyltransferase RD07_RS12360 PF00156 Phosphoribosyl transferase domain RD07_RS12375 PF02875 Mur ligase family, glutamate ligase domain RD07_RS12375 PF08245 Mur ligase middle domain RD07_RS12385 PF07196 Flagellin hook IN motif RD07_RS12385 PF02465 Flagellar hook-associated protein 2 N-terminus RD07_RS12385 PF07195 Flagellar hook-associated protein 2 C-terminus RD07_RS12390 PF02561 Flagellar protein FliS RD07_RS12410 PF01312 FlhB HrpN YscU SpaS Family RD07_RS12420 PF02049 Flagellar hook-basal body complex protein FliE RD07_RS12425 PF08345 Flagellar M-ring protein C-terminal RD07_RS12425 PF01514 Secretory protein of YscJ/FliF family RD07_RS12430 PF14842 FliG N-terminal domain RD07_RS12430 PF14841 FliG middle domain RD07_RS12430 PF01706 FliG C-terminal domain RD07_RS12440 PF18269 T3SS EscN ATPase C-terminal domain RD07_RS12440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD07_RS12465 PF03748 Flagellar basal body-associated protein FliL RD07_RS12470 PF02154 Flagellar motor switch protein FliM RD07_RS12470 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD07_RS12475 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD07_RS12475 PF16973 Flagellar motor switch protein FliN N-terminal RD07_RS12480 PF04347 Flagellar biosynthesis protein, FliO RD07_RS12485 PF00813 FliP family RD07_RS12490 PF01313 Bacterial export proteins, family 3 RD07_RS12495 PF01311 Bacterial export proteins, family 1 RD07_RS12505 PF08447 PAS fold RD07_RS12505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD07_RS12510 PF00672 HAMP domain RD07_RS12510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD07_RS12510 PF02203 Tar ligand binding domain homologue RD07_RS12515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD07_RS12515 PF02203 Tar ligand binding domain homologue RD07_RS12515 PF00672 HAMP domain RD07_RS12520 PF00669 Bacterial flagellin N-terminal helical region RD07_RS12525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD07_RS12525 PF00460 Flagella basal body rod protein RD07_RS12530 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RD07_RS12530 PF10135 Rod binding protein RD07_RS12535 PF02119 Flagellar P-ring protein RD07_RS12540 PF02107 Flagellar L-ring protein RD07_RS12545 PF00460 Flagella basal body rod protein RD07_RS12545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD07_RS12550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD07_RS12550 PF00460 Flagella basal body rod protein RD07_RS12555 PF00460 Flagella basal body rod protein RD07_RS12555 PF07559 Flagellar basal body protein FlaE RD07_RS12555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD07_RS12560 PF13861 FlgD Tudor-like domain RD07_RS12560 PF03963 Flagellar hook capping protein - N-terminal region RD07_RS12560 PF13860 FlgD Ig-like domain RD07_RS12565 PF00460 Flagella basal body rod protein RD07_RS12565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD07_RS12570 PF00460 Flagella basal body rod protein RD07_RS12580 PF04316 Anti-sigma-28 factor, FlgM RD07_RS12590 PF00448 SRP54-type protein, GTPase domain RD07_RS12600 PF01312 FlhB HrpN YscU SpaS Family RD07_RS12610 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS12615 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS12620 PF00005 ABC transporter RD07_RS12630 PF08546 Ketopantoate reductase PanE/ApbA C terminal RD07_RS12630 PF02558 Ketopantoate reductase PanE/ApbA RD07_RS12635 PF13378 Enolase C-terminal domain-like RD07_RS12640 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS12650 PF00694 Aconitase C-terminal domain RD07_RS12655 PF00356 Bacterial regulatory proteins, lacI family RD07_RS12660 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS12665 PF02515 CoA-transferase family III RD07_RS12675 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS12680 PF13607 Succinyl-CoA ligase like flavodoxin domain RD07_RS12680 PF13380 CoA binding domain RD07_RS12685 PF00392 Bacterial regulatory proteins, gntR family RD07_RS12685 PF07729 FCD domain RD07_RS12690 PF03328 HpcH/HpaI aldolase/citrate lyase family RD07_RS12700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS12700 PF03466 LysR substrate binding domain RD07_RS12710 PF12951 Passenger-associated-transport-repeat RD07_RS12720 PF03551 Transcriptional regulator PadR-like family RD07_RS12725 PF03372 Endonuclease/Exonuclease/phosphatase family RD07_RS12730 PF13091 PLD-like domain RD07_RS12745 PF03706 Lysylphosphatidylglycerol synthase TM region RD07_RS12775 PF00128 Alpha amylase, catalytic domain RD07_RS12775 PF11896 Domain of unknown function (DUF3416) RD07_RS12780 PF16657 Maltogenic Amylase, C-terminal domain RD07_RS12780 PF00128 Alpha amylase, catalytic domain RD07_RS12785 PF02806 Alpha amylase, C-terminal all-beta domain RD07_RS12785 PF00128 Alpha amylase, catalytic domain RD07_RS12785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD07_RS12790 PF00128 Alpha amylase, catalytic domain RD07_RS12790 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD07_RS12795 PF00128 Alpha amylase, catalytic domain RD07_RS12795 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD07_RS12795 PF11941 Domain of unknown function (DUF3459) RD07_RS12805 PF02446 4-alpha-glucanotransferase RD07_RS12810 PF00128 Alpha amylase, catalytic domain RD07_RS12820 PF08543 Phosphomethylpyrimidine kinase RD07_RS12825 PF01168 Alanine racemase, N-terminal domain RD07_RS12830 PF00155 Aminotransferase class I and II RD07_RS12830 PF00392 Bacterial regulatory proteins, gntR family RD07_RS12845 PF00582 Universal stress protein family RD07_RS12850 PF00248 Aldo/keto reductase family RD07_RS12860 PF01447 Thermolysin metallopeptidase, catalytic domain RD07_RS12860 PF16485 Protealysin propeptide RD07_RS12860 PF02868 Thermolysin metallopeptidase, alpha-helical domain RD07_RS12865 PF07681 DoxX RD07_RS12885 PF00578 AhpC/TSA family RD07_RS12890 PF03960 ArsC family RD07_RS12895 PF02515 CoA-transferase family III RD07_RS12915 PF00255 Glutathione peroxidase RD07_RS12920 PF00043 Glutathione S-transferase, C-terminal domain RD07_RS12920 PF02798 Glutathione S-transferase, N-terminal domain RD07_RS12935 PF10437 Bacterial lipoate protein ligase C-terminus RD07_RS12935 PF03099 Biotin/lipoate A/B protein ligase family RD07_RS12950 PF02666 Phosphatidylserine decarboxylase RD07_RS12955 PF01070 FMN-dependent dehydrogenase RD07_RS12960 PF03180 NLPA lipoprotein RD07_RS12965 PF08808 RES domain RD07_RS12975 PF04241 Protein of unknown function (DUF423) RD07_RS12995 PF13458 Periplasmic binding protein RD07_RS13000 PF17912 MalK OB fold domain RD07_RS13000 PF00005 ABC transporter RD07_RS13005 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS13010 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS13015 PF13416 Bacterial extracellular solute-binding protein RD07_RS13020 PF14748 Pyrroline-5-carboxylate reductase dimerisation RD07_RS13020 PF03807 NADP oxidoreductase coenzyme F420-dependent RD07_RS13025 PF02592 Putative vitamin uptake transporter RD07_RS13035 PF13458 Periplasmic binding protein RD07_RS13040 PF02653 Branched-chain amino acid transport system / permease component RD07_RS13045 PF02653 Branched-chain amino acid transport system / permease component RD07_RS13045 PF11862 Domain of unknown function (DUF3382) RD07_RS13050 PF00005 ABC transporter RD07_RS13050 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD07_RS13055 PF00005 ABC transporter RD07_RS13060 PF01177 Asp/Glu/Hydantoin racemase RD07_RS13075 PF00892 EamA-like transporter family RD07_RS13085 PF04235 Protein of unknown function (DUF418) RD07_RS13090 PF00521 DNA gyrase/topoisomerase IV, subunit A RD07_RS13100 PF01751 Toprim domain RD07_RS13100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS13100 PF00986 DNA gyrase B subunit, carboxyl terminus RD07_RS13100 PF00204 DNA gyrase B RD07_RS13105 PF00085 Thioredoxin RD07_RS13110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD07_RS13110 PF07498 Rho termination factor, N-terminal domain RD07_RS13110 PF07497 Rho termination factor, RNA-binding domain RD07_RS13120 PF08335 GlnD PII-uridylyltransferase RD07_RS13120 PF03710 Glutamate-ammonia ligase adenylyltransferase RD07_RS13125 PF02677 Epoxyqueuosine reductase QueH RD07_RS13130 PF03313 Serine dehydratase alpha chain RD07_RS13130 PF03315 Serine dehydratase beta chain RD07_RS13135 PF02690 Na+/Pi-cotransporter RD07_RS13140 PF01738 Dienelactone hydrolase family RD07_RS13150 PF01367 5'-3' exonuclease, C-terminal SAM fold RD07_RS13150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RD07_RS13150 PF00476 DNA polymerase family A RD07_RS13150 PF01612 3'-5' exonuclease RD07_RS13155 PF03641 Possible lysine decarboxylase RD07_RS13170 PF00679 Elongation factor G C-terminus RD07_RS13170 PF00009 Elongation factor Tu GTP binding domain RD07_RS13170 PF03144 Elongation factor Tu domain 2 RD07_RS13175 PF01509 TruB family pseudouridylate synthase (N terminal domain) RD07_RS13175 PF16198 tRNA pseudouridylate synthase B C-terminal domain RD07_RS13180 PF02033 Ribosome-binding factor A RD07_RS13185 PF04760 Translation initiation factor IF-2, N-terminal region RD07_RS13185 PF00009 Elongation factor Tu GTP binding domain RD07_RS13185 PF08364 Bacterial translation initiation factor IF-2 associated region RD07_RS13185 PF11987 Translation-initiation factor 2 RD07_RS13190 PF13184 NusA-like KH domain RD07_RS13190 PF08529 NusA N-terminal domain RD07_RS13195 PF17384 RimP C-terminal SH3 domain RD07_RS13195 PF02576 RimP N-terminal domain RD07_RS13200 PF00849 RNA pseudouridylate synthase RD07_RS13200 PF01479 S4 domain RD07_RS13205 PF04079 Segregation and condensation complex subunit ScpB RD07_RS13215 PF03466 LysR substrate binding domain RD07_RS13215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS13220 PF00881 Nitroreductase family RD07_RS13225 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD07_RS13225 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD07_RS13245 PF02798 Glutathione S-transferase, N-terminal domain RD07_RS13245 PF14497 Glutathione S-transferase, C-terminal domain RD07_RS13250 PF02401 LytB protein RD07_RS13255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD07_RS13260 PF04002 RadC-like JAB domain RD07_RS13265 PF04199 Putative cyclase RD07_RS13270 PF03301 Tryptophan 2,3-dioxygenase RD07_RS13275 PF01197 Ribosomal protein L31 RD07_RS13285 PF01554 MatE RD07_RS13300 PF18073 Rubredoxin metal binding domain RD07_RS13305 PF12034 Domain of unknown function (DUF3520) RD07_RS13305 PF00092 von Willebrand factor type A domain RD07_RS13305 PF12450 von Willebrand factor RD07_RS13310 PF04542 Sigma-70 region 2 RD07_RS13310 PF04545 Sigma-70, region 4 RD07_RS13330 PF01168 Alanine racemase, N-terminal domain RD07_RS13330 PF00842 Alanine racemase, C-terminal domain RD07_RS13345 PF01593 Flavin containing amine oxidoreductase RD07_RS13345 PF01593 Flavin containing amine oxidoreductase RD07_RS13350 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD07_RS13360 PF01061 ABC-2 type transporter RD07_RS13365 PF00005 ABC transporter RD07_RS13385 PF02424 ApbE family RD07_RS13390 PF00667 FAD binding domain RD07_RS13390 PF00258 Flavodoxin RD07_RS13390 PF00175 Oxidoreductase NAD-binding domain RD07_RS13400 PF07969 Amidohydrolase family RD07_RS13405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS13405 PF03466 LysR substrate binding domain RD07_RS13415 PF09370 Phosphoenolpyruvate hydrolase-like RD07_RS13430 PF03212 Pertactin RD07_RS13430 PF03797 Autotransporter beta-domain RD07_RS13435 PF03212 Pertactin RD07_RS13435 PF03797 Autotransporter beta-domain RD07_RS13445 PF00004 ATPase family associated with various cellular activities (AAA) RD07_RS13445 PF07724 AAA domain (Cdc48 subfamily) RD07_RS13445 PF17871 AAA lid domain RD07_RS13445 PF02861 Clp amino terminal domain, pathogenicity island component RD07_RS13445 PF10431 C-terminal, D2-small domain, of ClpB protein RD07_RS13450 PF13545 Crp-like helix-turn-helix domain RD07_RS13450 PF00027 Cyclic nucleotide-binding domain RD07_RS13465 PF00293 NUDIX domain RD07_RS13470 PF12843 Putative quorum-sensing-regulated virulence factor RD07_RS13480 PF04542 Sigma-70 region 2 RD07_RS13480 PF12680 SnoaL-like domain RD07_RS13480 PF08281 Sigma-70, region 4 RD07_RS13485 PF02627 Carboxymuconolactone decarboxylase family RD07_RS13515 PF00155 Aminotransferase class I and II RD07_RS13520 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS13525 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS13530 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS13535 PF00005 ABC transporter RD07_RS13560 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD07_RS13585 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS13590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD07_RS13590 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD07_RS13595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS13595 PF03466 LysR substrate binding domain RD07_RS13605 PF17676 LD-carboxypeptidase C-terminal domain RD07_RS13605 PF02016 LD-carboxypeptidase N-terminal domain RD07_RS13620 PF07690 Major Facilitator Superfamily RD07_RS13630 PF03466 LysR substrate binding domain RD07_RS13630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS13635 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RD07_RS13635 PF13378 Enolase C-terminal domain-like RD07_RS13640 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS13660 PF02567 Phenazine biosynthesis-like protein RD07_RS13670 PF03239 Iron permease FTR1 family RD07_RS13680 PF10634 Fe2+ transport protein RD07_RS13685 PF07879 PHB/PHA accumulation regulator DNA-binding domain RD07_RS13685 PF05233 PHB accumulation regulatory domain RD07_RS13690 PF00106 short chain dehydrogenase RD07_RS13695 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RD07_RS13700 PF02578 Multi-copper polyphenol oxidoreductase laccase RD07_RS13705 PF01479 S4 domain RD07_RS13705 PF00849 RNA pseudouridylate synthase RD07_RS13710 PF13525 Outer membrane lipoprotein RD07_RS13715 PF13307 Helicase C-terminal domain RD07_RS13715 PF04851 Type III restriction enzyme, res subunit RD07_RS13720 PF16921 Tex protein YqgF-like domain RD07_RS13720 PF09371 Tex-like protein N-terminal domain RD07_RS13720 PF00575 S1 RNA binding domain RD07_RS13720 PF17674 HHH domain RD07_RS13725 PF00579 tRNA synthetases class I (W and Y) RD07_RS13745 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS13755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS13755 PF03466 LysR substrate binding domain RD07_RS13765 PF03969 AFG1-like ATPase RD07_RS13770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD07_RS13770 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS13775 PF02817 e3 binding domain RD07_RS13775 PF00364 Biotin-requiring enzyme RD07_RS13775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD07_RS13780 PF02779 Transketolase, pyrimidine binding domain RD07_RS13780 PF16078 2-oxoglutarate dehydrogenase N-terminus RD07_RS13780 PF00676 Dehydrogenase E1 component RD07_RS13780 PF16870 2-oxoglutarate dehydrogenase C-terminal RD07_RS13785 PF03169 OPT oligopeptide transporter protein RD07_RS13790 PF03169 OPT oligopeptide transporter protein RD07_RS13795 PF01037 Lrp/AsnC ligand binding domain RD07_RS13800 PF17831 Pyruvate dehydrogenase E1 component middle domain RD07_RS13800 PF00456 Transketolase, thiamine diphosphate binding domain RD07_RS13805 PF01515 Phosphate acetyl/butaryl transferase RD07_RS13805 PF03949 Malic enzyme, NAD binding domain RD07_RS13805 PF00390 Malic enzyme, N-terminal domain RD07_RS13810 PF16970 Type-1 fimbrial protein, A RD07_RS13820 PF01272 Transcription elongation factor, GreA/GreB, C-term RD07_RS13820 PF03449 Transcription elongation factor, N-terminal RD07_RS13825 PF02811 PHP domain RD07_RS13860 PF01026 TatD related DNase RD07_RS13865 PF00005 ABC transporter RD07_RS13870 PF12704 MacB-like periplasmic core domain RD07_RS13870 PF02687 FtsX-like permease family RD07_RS13880 PF17768 RecJ OB domain RD07_RS13880 PF02272 DHHA1 domain RD07_RS13880 PF01368 DHH family RD07_RS13885 PF03462 PCRF domain RD07_RS13885 PF00472 RF-1 domain RD07_RS13890 PF00106 short chain dehydrogenase RD07_RS13895 PF01336 OB-fold nucleic acid binding domain RD07_RS13895 PF00152 tRNA synthetases class II (D, K and N) RD07_RS13905 PF17932 Tetracyclin repressor-like, C-terminal domain RD07_RS13905 PF00440 Bacterial regulatory proteins, tetR family RD07_RS13910 PF00501 AMP-binding enzyme RD07_RS13915 PF00005 ABC transporter RD07_RS13935 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD07_RS13935 PF00005 ABC transporter RD07_RS13945 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS13945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS13945 PF07689 KaiB domain RD07_RS13950 PF00072 Response regulator receiver domain RD07_RS13950 PF00486 Transcriptional regulatory protein, C terminal RD07_RS13955 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RD07_RS13965 PF03631 Virulence factor BrkB RD07_RS13980 PF01207 Dihydrouridine synthase (Dus) RD07_RS13985 PF01636 Phosphotransferase enzyme family RD07_RS14005 PF01985 CRS1 / YhbY (CRM) domain RD07_RS14010 PF01728 FtsJ-like methyltransferase RD07_RS14015 PF01434 Peptidase family M41 RD07_RS14015 PF06480 FtsH Extracellular RD07_RS14015 PF17862 AAA+ lid domain RD07_RS14015 PF00004 ATPase family associated with various cellular activities (AAA) RD07_RS14020 PF00809 Pterin binding enzyme RD07_RS14025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD07_RS14025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD07_RS14025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD07_RS14025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD07_RS14035 PF02541 Ppx/GppA phosphatase family RD07_RS14040 PF13089 Polyphosphate kinase N-terminal domain RD07_RS14040 PF13090 Polyphosphate kinase C-terminal domain 2 RD07_RS14040 PF02503 Polyphosphate kinase middle domain RD07_RS14040 PF17941 Polyphosphate kinase C-terminal domain 1 RD07_RS14045 PF12849 PBP superfamily domain RD07_RS14050 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS14055 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS14060 PF00005 ABC transporter RD07_RS14075 PF01337 Barstar (barnase inhibitor) RD07_RS14085 PF03949 Malic enzyme, NAD binding domain RD07_RS14085 PF01515 Phosphate acetyl/butaryl transferase RD07_RS14085 PF00390 Malic enzyme, N-terminal domain RD07_RS14095 PF00155 Aminotransferase class I and II RD07_RS14100 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RD07_RS14100 PF01464 Transglycosylase SLT domain RD07_RS14105 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RD07_RS14130 PF10414 Sirohaem synthase dimerisation region RD07_RS14130 PF14824 Sirohaem biosynthesis protein central RD07_RS14130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD07_RS14135 PF03212 Pertactin RD07_RS14135 PF03797 Autotransporter beta-domain RD07_RS14150 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RD07_RS14155 PF02547 Queuosine biosynthesis protein RD07_RS14160 PF01702 Queuine tRNA-ribosyltransferase RD07_RS14165 PF02699 Preprotein translocase subunit RD07_RS14170 PF07549 SecD/SecF GG Motif RD07_RS14170 PF13721 SecD export protein N-terminal TM region RD07_RS14170 PF02355 Protein export membrane protein RD07_RS14175 PF02355 Protein export membrane protein RD07_RS14175 PF07549 SecD/SecF GG Motif RD07_RS14190 PF01938 TRAM domain RD07_RS14190 PF04055 Radical SAM superfamily RD07_RS14190 PF00919 Uncharacterized protein family UPF0004 RD07_RS14195 PF02562 PhoH-like protein RD07_RS14200 PF02130 Uncharacterized protein family UPF0054 RD07_RS14205 PF00571 CBS domain RD07_RS14205 PF03471 Transporter associated domain RD07_RS14210 PF00795 Carbon-nitrogen hydrolase RD07_RS14215 PF00248 Aldo/keto reductase family RD07_RS14240 PF04344 Chemotaxis phosphatase, CheZ RD07_RS14245 PF00072 Response regulator receiver domain RD07_RS14250 PF01339 CheB methylesterase RD07_RS14250 PF00072 Response regulator receiver domain RD07_RS14260 PF02203 Tar ligand binding domain homologue RD07_RS14260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD07_RS14260 PF00672 HAMP domain RD07_RS14265 PF01584 CheW-like domain RD07_RS14270 PF01584 CheW-like domain RD07_RS14270 PF01627 Hpt domain RD07_RS14270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS14270 PF02895 Signal transducing histidine kinase, homodimeric domain RD07_RS14270 PF09078 CheY binding RD07_RS14275 PF00072 Response regulator receiver domain RD07_RS14280 PF00691 OmpA family RD07_RS14280 PF13677 Membrane MotB of proton-channel complex MotA/MotB RD07_RS14285 PF01618 MotA/TolQ/ExbB proton channel family RD07_RS14290 PF05280 Flagellar transcriptional activator (FlhC) RD07_RS14295 PF05247 Flagellar transcriptional activator (FlhD) RD07_RS14300 PF04542 Sigma-70 region 2 RD07_RS14300 PF04545 Sigma-70, region 4 RD07_RS14300 PF04539 Sigma-70 region 3 RD07_RS14310 PF01176 Translation initiation factor 1A / IF-1 RD07_RS14320 PF08525 Opacity-associated protein A N-terminal motif RD07_RS14320 PF01551 Peptidase family M23 RD07_RS14320 PF01476 LysM domain RD07_RS14330 PF00994 Probable molybdopterin binding domain RD07_RS14340 PF03591 AzlC protein RD07_RS14350 PF00226 DnaJ domain RD07_RS14350 PF01556 DnaJ C terminal domain RD07_RS14370 PF02798 Glutathione S-transferase, N-terminal domain RD07_RS14370 PF14834 Glutathione S-transferase, C-terminal domain RD07_RS14375 PF11339 Protein of unknown function (DUF3141) RD07_RS14380 PF01515 Phosphate acetyl/butaryl transferase RD07_RS14385 PF00871 Acetokinase family RD07_RS14395 PF00162 Phosphoglycerate kinase RD07_RS14400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RD07_RS14400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD07_RS14405 PF02779 Transketolase, pyrimidine binding domain RD07_RS14405 PF02780 Transketolase, C-terminal domain RD07_RS14405 PF00456 Transketolase, thiamine diphosphate binding domain RD07_RS14410 PF04452 RNA methyltransferase RD07_RS14420 PF00700 Bacterial flagellin C-terminal helical region RD07_RS14420 PF00669 Bacterial flagellin N-terminal helical region RD07_RS14425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD07_RS14425 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS14435 PF00456 Transketolase, thiamine diphosphate binding domain RD07_RS14435 PF17831 Pyruvate dehydrogenase E1 component middle domain RD07_RS14440 PF00989 PAS fold RD07_RS14440 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS14440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS14445 PF00196 Bacterial regulatory proteins, luxR family RD07_RS14445 PF00072 Response regulator receiver domain RD07_RS14450 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD07_RS14450 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD07_RS14455 PF01432 Peptidase family M3 RD07_RS14460 PF02630 SCO1/SenC RD07_RS14470 PF02321 Outer membrane efflux protein RD07_RS14475 PF00873 AcrB/AcrD/AcrF family RD07_RS14480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD07_RS14480 PF00529 HlyD membrane-fusion protein of T1SS RD07_RS14485 PF03466 LysR substrate binding domain RD07_RS14485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS14490 PF01479 S4 domain RD07_RS14490 PF00849 RNA pseudouridylate synthase RD07_RS14495 PF04345 Chorismate lyase RD07_RS14500 PF07690 Major Facilitator Superfamily RD07_RS14510 PF00248 Aldo/keto reductase family RD07_RS14520 PF00293 NUDIX domain RD07_RS14525 PF01245 Ribosomal protein L19 RD07_RS14540 PF04055 Radical SAM superfamily RD07_RS14550 PF01507 Phosphoadenosine phosphosulfate reductase family RD07_RS14555 PF01507 Phosphoadenosine phosphosulfate reductase family RD07_RS14560 PF12857 TOBE-like domain RD07_RS14560 PF00005 ABC transporter RD07_RS14560 PF17850 CysA C-terminal regulatory domain RD07_RS14565 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS14570 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS14585 PF00578 AhpC/TSA family RD07_RS14585 PF10417 C-terminal domain of 1-Cys peroxiredoxin RD07_RS14590 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS14590 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD07_RS14590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS14590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS14595 PF01012 Electron transfer flavoprotein domain RD07_RS14595 PF00766 Electron transfer flavoprotein FAD-binding domain RD07_RS14600 PF01012 Electron transfer flavoprotein domain RD07_RS14605 PF00850 Histone deacetylase domain RD07_RS14610 PF13406 Transglycosylase SLT domain RD07_RS14615 PF00291 Pyridoxal-phosphate dependent enzyme RD07_RS14625 PF10531 SLBB domain RD07_RS14630 PF01370 NAD dependent epimerase/dehydratase family RD07_RS14635 PF00294 pfkB family carbohydrate kinase RD07_RS14640 PF18073 Rubredoxin metal binding domain RD07_RS14650 PF00216 Bacterial DNA-binding protein RD07_RS14655 PF00575 S1 RNA binding domain RD07_RS14660 PF02224 Cytidylate kinase RD07_RS14665 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD07_RS14670 PF02153 Prephenate dehydrogenase RD07_RS14675 PF01817 Chorismate mutase type II RD07_RS14675 PF00800 Prephenate dehydratase RD07_RS14675 PF01842 ACT domain RD07_RS14680 PF00266 Aminotransferase class-V RD07_RS14685 PF03989 DNA gyrase C-terminal domain, beta-propeller RD07_RS14685 PF00521 DNA gyrase/topoisomerase IV, subunit A RD07_RS14690 PF00691 OmpA family RD07_RS14700 PF13419 Haloacid dehalogenase-like hydrolase RD07_RS14705 PF07690 Major Facilitator Superfamily RD07_RS14730 PF03466 LysR substrate binding domain RD07_RS14730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS14735 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS14745 PF00817 impB/mucB/samB family RD07_RS14745 PF11799 impB/mucB/samB family C-terminal domain RD07_RS14745 PF11798 IMS family HHH motif RD07_RS14755 PF00326 Prolyl oligopeptidase family RD07_RS14760 PF17092 Penicillin-binding protein OB-like domain RD07_RS14760 PF00912 Transglycosylase RD07_RS14760 PF00905 Penicillin binding protein transpeptidase domain RD07_RS14765 PF00149 Calcineurin-like phosphoesterase RD07_RS14780 PF00248 Aldo/keto reductase family RD07_RS14785 PF00248 Aldo/keto reductase family RD07_RS14790 PF00005 ABC transporter RD07_RS14790 PF00664 ABC transporter transmembrane region RD07_RS14835 PF01039 Carboxyl transferase domain RD07_RS14840 PF00289 Biotin carboxylase, N-terminal domain RD07_RS14840 PF02785 Biotin carboxylase C-terminal domain RD07_RS14840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD07_RS14845 PF00392 Bacterial regulatory proteins, gntR family RD07_RS14845 PF07702 UTRA domain RD07_RS14865 PF00682 HMGL-like RD07_RS14865 PF02436 Conserved carboxylase domain RD07_RS14865 PF00364 Biotin-requiring enzyme RD07_RS14870 PF00364 Biotin-requiring enzyme RD07_RS14880 PF01966 HD domain RD07_RS14900 PF07238 PilZ domain RD07_RS14900 PF07317 Flagellar regulator YcgR RD07_RS14915 PF05724 Thiopurine S-methyltransferase (TPMT) RD07_RS14920 PF00664 ABC transporter transmembrane region RD07_RS14920 PF00005 ABC transporter RD07_RS14935 PF00205 Thiamine pyrophosphate enzyme, central domain RD07_RS14935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD07_RS14935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD07_RS14940 PF10369 Small subunit of acetolactate synthase RD07_RS14945 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RD07_RS14945 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RD07_RS14950 PF01066 CDP-alcohol phosphatidyltransferase RD07_RS14960 PF00312 Ribosomal protein S15 RD07_RS14965 PF00575 S1 RNA binding domain RD07_RS14965 PF03725 3' exoribonuclease family, domain 2 RD07_RS14965 PF01138 3' exoribonuclease family, domain 1 RD07_RS14965 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RD07_RS14965 PF00013 KH domain RD07_RS14980 PF13291 ACT domain RD07_RS14980 PF00291 Pyridoxal-phosphate dependent enzyme RD07_RS14995 PF08990 Erythronolide synthase docking RD07_RS14995 PF02801 Beta-ketoacyl synthase, C-terminal domain RD07_RS14995 PF16197 Ketoacyl-synthetase C-terminal extension RD07_RS14995 PF14765 Polyketide synthase dehydratase RD07_RS14995 PF08659 KR domain RD07_RS14995 PF00109 Beta-ketoacyl synthase, N-terminal domain RD07_RS14995 PF00698 Acyl transferase domain RD07_RS14995 PF00550 Phosphopantetheine attachment site RD07_RS14995 PF08240 Alcohol dehydrogenase GroES-like domain RD07_RS15000 PF00121 Triosephosphate isomerase RD07_RS15005 PF03840 Preprotein translocase SecG subunit RD07_RS15015 PF02028 BCCT, betaine/carnitine/choline family transporter RD07_RS15025 PF07476 Methylaspartate ammonia-lyase C-terminus RD07_RS15025 PF05034 Methylaspartate ammonia-lyase N-terminus RD07_RS15030 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS15045 PF14698 Argininosuccinate lyase C-terminal RD07_RS15045 PF00206 Lyase RD07_RS15050 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS15065 PF03466 LysR substrate binding domain RD07_RS15065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS15070 PF01053 Cys/Met metabolism PLP-dependent enzyme RD07_RS15075 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD07_RS15090 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS15095 PF01266 FAD dependent oxidoreductase RD07_RS15105 PF05378 Hydantoinase/oxoprolinase N-terminal region RD07_RS15105 PF01968 Hydantoinase/oxoprolinase RD07_RS15115 PF00127 Copper binding proteins, plastocyanin/azurin family RD07_RS15125 PF02321 Outer membrane efflux protein RD07_RS15130 PF00873 AcrB/AcrD/AcrF family RD07_RS15135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD07_RS15140 PF01638 HxlR-like helix-turn-helix RD07_RS15150 PF02028 BCCT, betaine/carnitine/choline family transporter RD07_RS15155 PF03466 LysR substrate binding domain RD07_RS15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS15160 PF00781 Diacylglycerol kinase catalytic domain RD07_RS15170 PF01569 PAP2 superfamily RD07_RS15195 PF13609 Gram-negative porin RD07_RS15200 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RD07_RS15205 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RD07_RS15210 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RD07_RS15215 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RD07_RS15225 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RD07_RS15225 PF10531 SLBB domain RD07_RS15225 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RD07_RS15230 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RD07_RS15230 PF00384 Molybdopterin oxidoreductase RD07_RS15230 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RD07_RS15235 PF00146 NADH dehydrogenase RD07_RS15240 PF12838 4Fe-4S dicluster domain RD07_RS15245 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RD07_RS15250 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD07_RS15255 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD07_RS15255 PF00361 Proton-conducting membrane transporter RD07_RS15260 PF00361 Proton-conducting membrane transporter RD07_RS15260 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus RD07_RS15265 PF00361 Proton-conducting membrane transporter RD07_RS15275 PF00593 TonB dependent receptor RD07_RS15275 PF07715 TonB-dependent Receptor Plug Domain RD07_RS15280 PF07715 TonB-dependent Receptor Plug Domain RD07_RS15280 PF00593 TonB dependent receptor RD07_RS15295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD07_RS15295 PF00205 Thiamine pyrophosphate enzyme, central domain RD07_RS15295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD07_RS15300 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS15305 PF03466 LysR substrate binding domain RD07_RS15305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS15315 PF00270 DEAD/DEAH box helicase RD07_RS15315 PF00271 Helicase conserved C-terminal domain RD07_RS15315 PF03461 TRCF domain RD07_RS15315 PF02559 CarD-like/TRCF domain RD07_RS15315 PF17757 UvrB interaction domain RD07_RS15320 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RD07_RS15325 PF02542 YgbB family RD07_RS15335 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RD07_RS15340 PF01433 Peptidase family M1 domain RD07_RS15340 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RD07_RS15340 PF11940 Domain of unknown function (DUF3458) Ig-like fold RD07_RS15360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD07_RS15360 PF00205 Thiamine pyrophosphate enzyme, central domain RD07_RS15360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD07_RS15370 PF09084 NMT1/THI5 like RD07_RS15375 PF00005 ABC transporter RD07_RS15380 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS15390 PF13193 AMP-binding enzyme C-terminal domain RD07_RS15390 PF00501 AMP-binding enzyme RD07_RS15395 PF00107 Zinc-binding dehydrogenase RD07_RS15395 PF08240 Alcohol dehydrogenase GroES-like domain RD07_RS15400 PF00392 Bacterial regulatory proteins, gntR family RD07_RS15400 PF07729 FCD domain RD07_RS15410 PF00392 Bacterial regulatory proteins, gntR family RD07_RS15410 PF07729 FCD domain RD07_RS15415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD07_RS15415 PF00205 Thiamine pyrophosphate enzyme, central domain RD07_RS15415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD07_RS15435 PF01063 Amino-transferase class IV RD07_RS15440 PF00005 ABC transporter RD07_RS15445 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS15455 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS15460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS15460 PF03466 LysR substrate binding domain RD07_RS15465 PF02321 Outer membrane efflux protein RD07_RS15470 PF13533 Biotin-lipoyl like RD07_RS15475 PF00664 ABC transporter transmembrane region RD07_RS15475 PF03412 Peptidase C39 family RD07_RS15475 PF00005 ABC transporter RD07_RS15480 PF03497 Anthrax toxin LF subunit RD07_RS15480 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RD07_RS15480 PF02382 N-terminal domain in RTX protein RD07_RS15490 PF02794 RTX toxin acyltransferase family RD07_RS15495 PF00171 Aldehyde dehydrogenase family RD07_RS15505 PF01266 FAD dependent oxidoreductase RD07_RS15510 PF02538 Hydantoinase B/oxoprolinase RD07_RS15515 PF05378 Hydantoinase/oxoprolinase N-terminal region RD07_RS15515 PF01968 Hydantoinase/oxoprolinase RD07_RS15520 PF03466 LysR substrate binding domain RD07_RS15520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS15530 PF00348 Polyprenyl synthetase RD07_RS15540 PF00829 Ribosomal prokaryotic L21 protein RD07_RS15545 PF01016 Ribosomal L27 protein RD07_RS15550 PF01018 GTP1/OBG RD07_RS15550 PF01926 50S ribosome-binding GTPase RD07_RS15555 PF00696 Amino acid kinase family RD07_RS15555 PF01472 PUA domain RD07_RS15595 PF16220 Domain of unknown function (DUF4880) RD07_RS15595 PF04773 FecR protein RD07_RS15600 PF00593 TonB dependent receptor RD07_RS15600 PF07715 TonB-dependent Receptor Plug Domain RD07_RS15605 PF04264 YceI-like domain RD07_RS15620 PF16653 Saccharopine dehydrogenase C-terminal domain RD07_RS15620 PF03435 Saccharopine dehydrogenase NADP binding domain RD07_RS15625 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD07_RS15645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS15650 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS15655 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS15660 PF00005 ABC transporter RD07_RS15660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS15665 PF01425 Amidase RD07_RS15670 PF00202 Aminotransferase class-III RD07_RS15690 PF04972 BON domain RD07_RS15690 PF00691 OmpA family RD07_RS15695 PF01329 Pterin 4 alpha carbinolamine dehydratase RD07_RS15705 PF00483 Nucleotidyl transferase RD07_RS15710 PF01636 Phosphotransferase enzyme family RD07_RS15715 PF04453 LPS transport system D RD07_RS15720 PF00639 PPIC-type PPIASE domain RD07_RS15720 PF09312 SurA N-terminal domain RD07_RS15725 PF00398 Ribosomal RNA adenine dimethylase RD07_RS15730 PF02595 Glycerate kinase family RD07_RS15735 PF02887 Pyruvate kinase, alpha/beta domain RD07_RS15735 PF00224 Pyruvate kinase, barrel domain RD07_RS15740 PF07670 Nucleoside recognition RD07_RS15745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS15745 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS15745 PF09317 Domain of unknown function (DUF1974) RD07_RS15745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS15760 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS15765 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS15770 PF00005 ABC transporter RD07_RS15775 PF01032 FecCD transport family RD07_RS15785 PF00691 OmpA family RD07_RS15790 PF07676 WD40-like Beta Propeller Repeat RD07_RS15790 PF04052 TolB amino-terminal domain RD07_RS15800 PF02472 Biopolymer transport protein ExbD/TolR RD07_RS15805 PF01618 MotA/TolQ/ExbB proton channel family RD07_RS15810 PF03061 Thioesterase superfamily RD07_RS15815 PF04073 Aminoacyl-tRNA editing domain RD07_RS15815 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD07_RS15815 PF03129 Anticodon binding domain RD07_RS15820 PF00293 NUDIX domain RD07_RS15825 PF00072 Response regulator receiver domain RD07_RS15825 PF00486 Transcriptional regulatory protein, C terminal RD07_RS15835 PF02586 SOS response associated peptidase (SRAP) RD07_RS15900 PF06791 Prophage tail length tape measure protein RD07_RS16040 PF03180 NLPA lipoprotein RD07_RS16050 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RD07_RS16050 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RD07_RS16055 PF00005 ABC transporter RD07_RS16060 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD07_RS16060 PF00005 ABC transporter RD07_RS16065 PF02653 Branched-chain amino acid transport system / permease component RD07_RS16070 PF02653 Branched-chain amino acid transport system / permease component RD07_RS16075 PF13458 Periplasmic binding protein RD07_RS16080 PF01425 Amidase RD07_RS16085 PF00484 Carbonic anhydrase RD07_RS16100 PF00271 Helicase conserved C-terminal domain RD07_RS16100 PF00270 DEAD/DEAH box helicase RD07_RS16100 PF00570 HRDC domain RD07_RS16100 PF09382 RQC domain RD07_RS16100 PF16124 RecQ zinc-binding RD07_RS16105 PF05491 RuvB C-terminal winged helix domain RD07_RS16105 PF17864 RuvB AAA lid domain RD07_RS16105 PF05496 Holliday junction DNA helicase RuvB P-loop domain RD07_RS16110 PF00291 Pyridoxal-phosphate dependent enzyme RD07_RS16115 PF01370 NAD dependent epimerase/dehydratase family RD07_RS16120 PF01330 RuvA N terminal domain RD07_RS16120 PF07499 RuvA, C-terminal domain RD07_RS16125 PF02075 Crossover junction endodeoxyribonuclease RuvC RD07_RS16130 PF01808 AICARFT/IMPCHase bienzyme RD07_RS16130 PF02142 MGS-like domain RD07_RS16135 PF02954 Bacterial regulatory protein, Fis family RD07_RS16140 PF01207 Dihydrouridine synthase (Dus) RD07_RS16145 PF01494 FAD binding domain RD07_RS16155 PF00557 Metallopeptidase family M24 RD07_RS16155 PF05195 Aminopeptidase P, N-terminal domain RD07_RS16180 PF13609 Gram-negative porin RD07_RS16190 PF00483 Nucleotidyl transferase RD07_RS16195 PF01435 Peptidase family M48 RD07_RS16195 PF13181 Tetratricopeptide repeat RD07_RS16200 PF00561 alpha/beta hydrolase fold RD07_RS16215 PF01063 Amino-transferase class IV RD07_RS16230 PF00270 DEAD/DEAH box helicase RD07_RS16230 PF00271 Helicase conserved C-terminal domain RD07_RS16250 PF00994 Probable molybdopterin binding domain RD07_RS16250 PF18146 Damage-inducible protein CinA KH domain RD07_RS16250 PF02464 Competence-damaged protein RD07_RS16255 PF09339 IclR helix-turn-helix domain RD07_RS16255 PF01614 Bacterial transcriptional regulator RD07_RS16260 PF18807 Tripartite Tc toxins repeat RD07_RS16260 PF05785 Rho-activating domain of cytotoxic necrotizing factor RD07_RS16265 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS16275 PF01180 Dihydroorotate dehydrogenase RD07_RS16280 PF04376 Arginine-tRNA-protein transferase, N terminus RD07_RS16280 PF04377 Arginine-tRNA-protein transferase, C terminus RD07_RS16285 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RD07_RS16295 PF03466 LysR substrate binding domain RD07_RS16295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS16335 PF00392 Bacterial regulatory proteins, gntR family RD07_RS16335 PF07729 FCD domain RD07_RS16340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD07_RS16340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD07_RS16340 PF00205 Thiamine pyrophosphate enzyme, central domain RD07_RS16345 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS16350 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD07_RS16355 PF01515 Phosphate acetyl/butaryl transferase RD07_RS16355 PF03949 Malic enzyme, NAD binding domain RD07_RS16355 PF00390 Malic enzyme, N-terminal domain RD07_RS16365 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS16370 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS16375 PF00005 ABC transporter RD07_RS16375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS16390 PF03466 LysR substrate binding domain RD07_RS16390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS16405 PF01022 Bacterial regulatory protein, arsR family RD07_RS16420 PF03594 Benzoate membrane transport protein RD07_RS16425 PF00037 4Fe-4S binding domain RD07_RS16430 PF01467 Cytidylyltransferase-like RD07_RS16440 PF02881 SRP54-type protein, helical bundle domain RD07_RS16440 PF00448 SRP54-type protein, GTPase domain RD07_RS16455 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS16460 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS16465 PF00005 ABC transporter RD07_RS16475 PF00005 ABC transporter RD07_RS16495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD07_RS16495 PF00925 GTP cyclohydrolase II RD07_RS16500 PF00885 6,7-dimethyl-8-ribityllumazine synthase RD07_RS16505 PF01029 NusB family RD07_RS16510 PF00586 AIR synthase related protein, N-terminal domain RD07_RS16510 PF02769 AIR synthase related protein, C-terminal domain RD07_RS16515 PF04608 Phosphatidylglycerophosphatase A RD07_RS16520 PF02464 Competence-damaged protein RD07_RS16520 PF18146 Damage-inducible protein CinA KH domain RD07_RS16520 PF00994 Probable molybdopterin binding domain RD07_RS16525 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RD07_RS16530 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS16535 PF01219 Prokaryotic diacylglycerol kinase RD07_RS16540 PF03631 Virulence factor BrkB RD07_RS16545 PF03797 Autotransporter beta-domain RD07_RS16545 PF03212 Pertactin RD07_RS16550 PF00118 TCP-1/cpn60 chaperonin family RD07_RS16555 PF00166 Chaperonin 10 Kd subunit RD07_RS16575 PF00890 FAD binding domain RD07_RS16585 PF03466 LysR substrate binding domain RD07_RS16585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS16590 PF00890 FAD binding domain RD07_RS16610 PF00990 Diguanylate cyclase, GGDEF domain RD07_RS16615 PF00072 Response regulator receiver domain RD07_RS16645 PF12867 DinB superfamily RD07_RS16645 PF03781 Sulfatase-modifying factor enzyme 1 RD07_RS16650 PF10017 Histidine-specific methyltransferase, SAM-dependent RD07_RS16660 PF13091 PLD-like domain RD07_RS16660 PF13396 Phospholipase_D-nuclease N-terminal RD07_RS16670 PF01645 Conserved region in glutamate synthase RD07_RS16675 PF04143 Sulphur transport RD07_RS16680 PF03547 Membrane transport protein RD07_RS16685 PF13673 Acetyltransferase (GNAT) domain RD07_RS16705 PF00773 RNB domain RD07_RS16705 PF17876 Cold shock domain RD07_RS16705 PF08461 Ribonuclease R winged-helix domain RD07_RS16705 PF00575 S1 RNA binding domain RD07_RS16705 PF08206 Ribonuclease B OB domain RD07_RS16710 PF00588 SpoU rRNA Methylase family RD07_RS16710 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD07_RS16715 PF01053 Cys/Met metabolism PLP-dependent enzyme RD07_RS16720 PF18331 PKHD-type hydroxylase C-terminal domain RD07_RS16720 PF13640 2OG-Fe(II) oxygenase superfamily RD07_RS16725 PF00216 Bacterial DNA-binding protein RD07_RS16740 PF01618 MotA/TolQ/ExbB proton channel family RD07_RS16745 PF02472 Biopolymer transport protein ExbD/TolR RD07_RS16750 PF00072 Response regulator receiver domain RD07_RS16750 PF00486 Transcriptional regulatory protein, C terminal RD07_RS16755 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS16755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS16755 PF08521 Two-component sensor kinase N-terminal RD07_RS16760 PF02705 K+ potassium transporter RD07_RS16765 PF00764 Arginosuccinate synthase RD07_RS16770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD07_RS16770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD07_RS16775 PF00202 Aminotransferase class-III RD07_RS16785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS16785 PF03466 LysR substrate binding domain RD07_RS16795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD07_RS16795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD07_RS16800 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS16815 PF07729 FCD domain RD07_RS16815 PF00392 Bacterial regulatory proteins, gntR family RD07_RS16825 PF07690 Major Facilitator Superfamily RD07_RS16835 PF02627 Carboxymuconolactone decarboxylase family RD07_RS16840 PF00578 AhpC/TSA family RD07_RS16845 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS16845 PF00672 HAMP domain RD07_RS16845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS16855 PF00072 Response regulator receiver domain RD07_RS16855 PF00486 Transcriptional regulatory protein, C terminal RD07_RS16860 PF00814 Glycoprotease family RD07_RS16865 PF03167 Uracil DNA glycosylase superfamily RD07_RS16870 PF07690 Major Facilitator Superfamily RD07_RS16875 PF06470 SMC proteins Flexible Hinge Domain RD07_RS16875 PF02463 RecF/RecN/SMC N terminal domain RD07_RS16885 PF12826 Helix-hairpin-helix motif RD07_RS16885 PF01653 NAD-dependent DNA ligase adenylation domain RD07_RS16885 PF00533 BRCA1 C Terminus (BRCT) domain RD07_RS16885 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RD07_RS16885 PF03120 NAD-dependent DNA ligase OB-fold domain RD07_RS16900 PF04279 Intracellular septation protein A RD07_RS16905 PF01641 SelR domain RD07_RS16910 PF00005 ABC transporter RD07_RS16915 PF02361 Cobalt transport protein RD07_RS16920 PF02632 BioY family RD07_RS16935 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD07_RS16935 PF00005 ABC transporter RD07_RS16940 PF01063 Amino-transferase class IV RD07_RS16955 PF02653 Branched-chain amino acid transport system / permease component RD07_RS16965 PF00005 ABC transporter RD07_RS16970 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD07_RS16970 PF00005 ABC transporter RD07_RS16975 PF10576 Iron-sulfur binding domain of endonuclease III RD07_RS16975 PF00730 HhH-GPD superfamily base excision DNA repair protein RD07_RS16975 PF00633 Helix-hairpin-helix motif RD07_RS16980 PF04060 Putative Fe-S cluster RD07_RS16990 PF00175 Oxidoreductase NAD-binding domain RD07_RS16990 PF00970 Oxidoreductase FAD-binding domain RD07_RS16995 PF11953 Domain of unknown function (DUF3470) RD07_RS16995 PF00037 4Fe-4S binding domain RD07_RS17000 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RD07_RS17000 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RD07_RS17005 PF01042 Endoribonuclease L-PSP RD07_RS17015 PF06167 Glucose-regulated metallo-peptidase M90 RD07_RS17020 PF02824 TGS domain RD07_RS17020 PF04607 Region found in RelA / SpoT proteins RD07_RS17020 PF13291 ACT domain RD07_RS17025 PF01546 Peptidase family M20/M25/M40 RD07_RS17025 PF07687 Peptidase dimerisation domain RD07_RS17030 PF00291 Pyridoxal-phosphate dependent enzyme RD07_RS17035 PF00290 Tryptophan synthase alpha chain RD07_RS17040 PF17848 Acetyl-coA carboxylase zinc finger domain RD07_RS17040 PF01039 Carboxyl transferase domain RD07_RS17045 PF09411 Lipid A 3-O-deacylase (PagL) RD07_RS17060 PF00575 S1 RNA binding domain RD07_RS17060 PF10150 Ribonuclease E/G family RD07_RS17060 PF12111 Polyribonucleotide phosphorylase C terminal RD07_RS17065 PF01479 S4 domain RD07_RS17065 PF00849 RNA pseudouridylate synthase RD07_RS17070 PF13419 Haloacid dehalogenase-like hydrolase RD07_RS17075 PF00174 Oxidoreductase molybdopterin binding domain RD07_RS17080 PF01794 Ferric reductase like transmembrane component RD07_RS17090 PF02515 CoA-transferase family III RD07_RS17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS17095 PF03466 LysR substrate binding domain RD07_RS17105 PF02515 CoA-transferase family III RD07_RS17125 PF03466 LysR substrate binding domain RD07_RS17125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS17130 PF01042 Endoribonuclease L-PSP RD07_RS17135 PF00042 Globin RD07_RS17135 PF00175 Oxidoreductase NAD-binding domain RD07_RS17135 PF00970 Oxidoreductase FAD-binding domain RD07_RS17140 PF02667 Short chain fatty acid transporter RD07_RS17145 PF00171 Aldehyde dehydrogenase family RD07_RS17150 PF07729 FCD domain RD07_RS17150 PF00392 Bacterial regulatory proteins, gntR family RD07_RS17160 PF00313 'Cold-shock' DNA-binding domain RD07_RS17165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS17165 PF03466 LysR substrate binding domain RD07_RS17180 PF02803 Thiolase, C-terminal domain RD07_RS17180 PF00108 Thiolase, N-terminal domain RD07_RS17190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS17190 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS17190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS17195 PF03466 LysR substrate binding domain RD07_RS17195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS17200 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS17205 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS17210 PF02515 CoA-transferase family III RD07_RS17215 PF03471 Transporter associated domain RD07_RS17215 PF03741 Integral membrane protein TerC family RD07_RS17220 PF02308 MgtC family RD07_RS17225 PF03144 Elongation factor Tu domain 2 RD07_RS17225 PF00009 Elongation factor Tu GTP binding domain RD07_RS17225 PF03764 Elongation factor G, domain IV RD07_RS17225 PF14492 Elongation Factor G, domain II RD07_RS17225 PF00679 Elongation factor G C-terminus RD07_RS17230 PF00155 Aminotransferase class I and II RD07_RS17230 PF00392 Bacterial regulatory proteins, gntR family RD07_RS17240 PF00582 Universal stress protein family RD07_RS17245 PF03764 Elongation factor G, domain IV RD07_RS17245 PF00009 Elongation factor Tu GTP binding domain RD07_RS17245 PF03144 Elongation factor Tu domain 2 RD07_RS17245 PF00679 Elongation factor G C-terminus RD07_RS17245 PF14492 Elongation Factor G, domain II RD07_RS17255 PF00701 Dihydrodipicolinate synthetase family RD07_RS17260 PF03466 LysR substrate binding domain RD07_RS17260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS17265 PF02515 CoA-transferase family III RD07_RS17270 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS17275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS17275 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS17275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS17280 PF01575 MaoC like domain RD07_RS17295 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD07_RS17295 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD07_RS17300 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS17305 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS17305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS17305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS17310 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS17315 PF13607 Succinyl-CoA ligase like flavodoxin domain RD07_RS17315 PF13380 CoA binding domain RD07_RS17325 PF00676 Dehydrogenase E1 component RD07_RS17330 PF02780 Transketolase, C-terminal domain RD07_RS17330 PF02779 Transketolase, pyrimidine binding domain RD07_RS17335 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS17340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD07_RS17340 PF02817 e3 binding domain RD07_RS17340 PF00364 Biotin-requiring enzyme RD07_RS17345 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS17345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS17345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS17350 PF00501 AMP-binding enzyme RD07_RS17350 PF13193 AMP-binding enzyme C-terminal domain RD07_RS17360 PF13458 Periplasmic binding protein RD07_RS17365 PF02653 Branched-chain amino acid transport system / permease component RD07_RS17370 PF00005 ABC transporter RD07_RS17370 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD07_RS17375 PF00005 ABC transporter RD07_RS17380 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS17380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD07_RS17395 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS17410 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS17420 PF00899 ThiF family RD07_RS17425 PF13180 PDZ domain RD07_RS17425 PF03572 Peptidase family S41 RD07_RS17430 PF01551 Peptidase family M23 RD07_RS17435 PF00300 Histidine phosphatase superfamily (branch 1) RD07_RS17440 PF17773 UPF0176 acylphosphatase like domain RD07_RS17440 PF12368 Rhodanase C-terminal RD07_RS17440 PF00581 Rhodanese-like domain RD07_RS17445 PF00462 Glutaredoxin RD07_RS17450 PF02556 Preprotein translocase subunit SecB RD07_RS17455 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RD07_RS17455 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RD07_RS17460 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS17465 PF00588 SpoU rRNA Methylase family RD07_RS17475 PF08241 Methyltransferase domain RD07_RS17480 PF04107 Glutamate-cysteine ligase family 2(GCS2) RD07_RS17485 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD07_RS17495 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS17500 PF00005 ABC transporter RD07_RS17510 PF01799 [2Fe-2S] binding domain RD07_RS17510 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS17515 PF00941 FAD binding domain in molybdopterin dehydrogenase RD07_RS17515 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD07_RS17520 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD07_RS17520 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD07_RS17525 PF03480 Bacterial extracellular solute-binding protein, family 7 RD07_RS17530 PF00355 Rieske [2Fe-2S] domain RD07_RS17535 PF14759 Reductase C-terminal RD07_RS17535 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS17540 PF00355 Rieske [2Fe-2S] domain RD07_RS17540 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD07_RS17550 PF00857 Isochorismatase family RD07_RS17560 PF00561 alpha/beta hydrolase fold RD07_RS17565 PF17645 Arylmalonate decarboxylase RD07_RS17575 PF12804 MobA-like NTP transferase domain RD07_RS17585 PF01047 MarR family RD07_RS17590 PF02386 Cation transport protein RD07_RS17595 PF02254 TrkA-N domain RD07_RS17595 PF02080 TrkA-C domain RD07_RS17600 PF00158 Sigma-54 interaction domain RD07_RS17600 PF02954 Bacterial regulatory protein, Fis family RD07_RS17600 PF00072 Response regulator receiver domain RD07_RS17605 PF00672 HAMP domain RD07_RS17605 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS17605 PF00989 PAS fold RD07_RS17605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS17615 PF01189 16S rRNA methyltransferase RsmB/F RD07_RS17615 PF01029 NusB family RD07_RS17640 PF01810 LysE type translocator RD07_RS17645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS17645 PF03466 LysR substrate binding domain RD07_RS17655 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS17660 PF01168 Alanine racemase, N-terminal domain RD07_RS17665 PF00155 Aminotransferase class I and II RD07_RS17670 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS17680 PF00682 HMGL-like RD07_RS17685 PF17782 DprA winged helix domain RD07_RS17685 PF02481 DNA recombination-mediator protein A RD07_RS17690 PF01037 Lrp/AsnC ligand binding domain RD07_RS17695 PF00266 Aminotransferase class-V RD07_RS17700 PF01327 Polypeptide deformylase RD07_RS17710 PF00551 Formyl transferase RD07_RS17710 PF02911 Formyl transferase, C-terminal domain RD07_RS17720 PF13419 Haloacid dehalogenase-like hydrolase RD07_RS17730 PF03641 Possible lysine decarboxylase RD07_RS17740 PF04055 Radical SAM superfamily RD07_RS17740 PF18693 TRAM domain RD07_RS17740 PF00919 Uncharacterized protein family UPF0004 RD07_RS17745 PF01361 Tautomerase enzyme RD07_RS17750 PF01266 FAD dependent oxidoreductase RD07_RS17755 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS17760 PF00392 Bacterial regulatory proteins, gntR family RD07_RS17760 PF07729 FCD domain RD07_RS17770 PF00202 Aminotransferase class-III RD07_RS17775 PF00491 Arginase family RD07_RS17785 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS17790 PF02627 Carboxymuconolactone decarboxylase family RD07_RS17795 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS17800 PF09339 IclR helix-turn-helix domain RD07_RS17800 PF01614 Bacterial transcriptional regulator RD07_RS17805 PF00501 AMP-binding enzyme RD07_RS17805 PF13193 AMP-binding enzyme C-terminal domain RD07_RS17810 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS17820 PF12951 Passenger-associated-transport-repeat RD07_RS17820 PF12951 Passenger-associated-transport-repeat RD07_RS17840 PF03466 LysR substrate binding domain RD07_RS17840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS17850 PF01168 Alanine racemase, N-terminal domain RD07_RS17850 PF14031 Putative serine dehydratase domain RD07_RS17855 PF07411 Domain of unknown function (DUF1508) RD07_RS17860 PF01145 SPFH domain / Band 7 family RD07_RS17870 PF01042 Endoribonuclease L-PSP RD07_RS17915 PF03837 RecT family RD07_RS17950 PF00589 Phage integrase family RD07_RS17955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS17955 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS17970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS17970 PF03466 LysR substrate binding domain RD07_RS17975 PF02525 Flavodoxin-like fold RD07_RS17985 PF14849 YidC periplasmic domain RD07_RS17985 PF02096 60Kd inner membrane protein RD07_RS17990 PF01809 Putative membrane protein insertion efficiency factor RD07_RS17995 PF00825 Ribonuclease P RD07_RS18000 PF00468 Ribosomal protein L34 RD07_RS18005 PF00308 Bacterial dnaA protein RD07_RS18005 PF08299 Bacterial dnaA protein helix-turn-helix RD07_RS18005 PF11638 DnaA N-terminal domain RD07_RS18010 PF00712 DNA polymerase III beta subunit, N-terminal domain RD07_RS18010 PF02767 DNA polymerase III beta subunit, central domain RD07_RS18010 PF02768 DNA polymerase III beta subunit, C-terminal domain RD07_RS18015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS18015 PF00204 DNA gyrase B RD07_RS18015 PF01751 Toprim domain RD07_RS18015 PF18053 DNA gyrase B subunit insert domain RD07_RS18015 PF00986 DNA gyrase B subunit, carboxyl terminus RD07_RS18020 PF09339 IclR helix-turn-helix domain RD07_RS18020 PF01614 Bacterial transcriptional regulator RD07_RS18025 PF01425 Amidase RD07_RS18030 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS18040 PF01070 FMN-dependent dehydrogenase RD07_RS18060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS18060 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS18060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS18065 PF00376 MerR family regulatory protein RD07_RS18065 PF09278 MerR, DNA binding RD07_RS18080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD07_RS18080 PF02770 Acyl-CoA dehydrogenase, middle domain RD07_RS18080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD07_RS18090 PF02803 Thiolase, C-terminal domain RD07_RS18090 PF00108 Thiolase, N-terminal domain RD07_RS18095 PF01039 Carboxyl transferase domain RD07_RS18100 PF00289 Biotin carboxylase, N-terminal domain RD07_RS18100 PF02785 Biotin carboxylase C-terminal domain RD07_RS18100 PF00364 Biotin-requiring enzyme RD07_RS18100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD07_RS18110 PF00202 Aminotransferase class-III RD07_RS18115 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS18120 PF14031 Putative serine dehydratase domain RD07_RS18120 PF01168 Alanine racemase, N-terminal domain RD07_RS18125 PF16868 NMT1-like family RD07_RS18135 PF07715 TonB-dependent Receptor Plug Domain RD07_RS18135 PF00593 TonB dependent receptor RD07_RS18140 PF04361 Protein of unknown function (DUF494) RD07_RS18155 PF01131 DNA topoisomerase RD07_RS18155 PF01751 Toprim domain RD07_RS18165 PF00005 ABC transporter RD07_RS18170 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS18180 PF00171 Aldehyde dehydrogenase family RD07_RS18190 PF00205 Thiamine pyrophosphate enzyme, central domain RD07_RS18190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD07_RS18190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD07_RS18195 PF01037 Lrp/AsnC ligand binding domain RD07_RS18200 PF01062 Bestrophin, RFP-TM, chloride channel RD07_RS18210 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD07_RS18225 PF02310 B12 binding domain RD07_RS18225 PF02607 B12 binding domain RD07_RS18225 PF02574 Homocysteine S-methyltransferase RD07_RS18225 PF02965 Vitamin B12 dependent methionine synthase, activation domain RD07_RS18225 PF00809 Pterin binding enzyme RD07_RS18230 PF00593 TonB dependent receptor RD07_RS18230 PF07715 TonB-dependent Receptor Plug Domain RD07_RS18235 PF01497 Periplasmic binding protein RD07_RS18240 PF05690 Thiazole biosynthesis protein ThiG RD07_RS18245 PF08543 Phosphomethylpyrimidine kinase RD07_RS18260 PF02321 Outer membrane efflux protein RD07_RS18265 PF01467 Cytidylyltransferase-like RD07_RS18275 PF01594 AI-2E family transporter RD07_RS18285 PF07885 Ion channel RD07_RS18285 PF02254 TrkA-N domain RD07_RS18295 PF00164 Ribosomal protein S12/S23 RD07_RS18300 PF00177 Ribosomal protein S7p/S5e RD07_RS18305 PF03144 Elongation factor Tu domain 2 RD07_RS18305 PF00009 Elongation factor Tu GTP binding domain RD07_RS18305 PF03764 Elongation factor G, domain IV RD07_RS18305 PF14492 Elongation Factor G, domain II RD07_RS18305 PF00679 Elongation factor G C-terminus RD07_RS18310 PF00009 Elongation factor Tu GTP binding domain RD07_RS18310 PF03143 Elongation factor Tu C-terminal domain RD07_RS18310 PF03144 Elongation factor Tu domain 2 RD07_RS18315 PF00338 Ribosomal protein S10p/S20e RD07_RS18320 PF00297 Ribosomal protein L3 RD07_RS18325 PF00573 Ribosomal protein L4/L1 family RD07_RS18330 PF00276 Ribosomal protein L23 RD07_RS18335 PF03947 Ribosomal Proteins L2, C-terminal domain RD07_RS18335 PF00181 Ribosomal Proteins L2, RNA binding domain RD07_RS18340 PF00203 Ribosomal protein S19 RD07_RS18345 PF00237 Ribosomal protein L22p/L17e RD07_RS18350 PF00189 Ribosomal protein S3, C-terminal domain RD07_RS18350 PF07650 KH domain RD07_RS18355 PF00252 Ribosomal protein L16p/L10e RD07_RS18360 PF00831 Ribosomal L29 protein RD07_RS18365 PF00366 Ribosomal protein S17 RD07_RS18375 PF00171 Aldehyde dehydrogenase family RD07_RS18385 PF00238 Ribosomal protein L14p/L23e RD07_RS18390 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RD07_RS18395 PF00673 ribosomal L5P family C-terminus RD07_RS18395 PF00281 Ribosomal protein L5 RD07_RS18400 PF00253 Ribosomal protein S14p/S29e RD07_RS18405 PF00410 Ribosomal protein S8 RD07_RS18410 PF00347 Ribosomal protein L6 RD07_RS18415 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RD07_RS18420 PF00333 Ribosomal protein S5, N-terminal domain RD07_RS18420 PF03719 Ribosomal protein S5, C-terminal domain RD07_RS18425 PF00327 Ribosomal protein L30p/L7e RD07_RS18430 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RD07_RS18435 PF00344 SecY translocase RD07_RS18440 PF01176 Translation initiation factor 1A / IF-1 RD07_RS18445 PF00444 Ribosomal protein L36 RD07_RS18450 PF00416 Ribosomal protein S13/S18 RD07_RS18455 PF00411 Ribosomal protein S11 RD07_RS18460 PF00163 Ribosomal protein S4/S9 N-terminal domain RD07_RS18460 PF01479 S4 domain RD07_RS18465 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RD07_RS18465 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RD07_RS18465 PF01000 RNA polymerase Rpb3/RpoA insert domain RD07_RS18470 PF01196 Ribosomal protein L17 RD07_RS18480 PF03091 CutA1 divalent ion tolerance protein RD07_RS18485 PF11412 Disulphide bond corrector protein DsbC RD07_RS18485 PF02683 Cytochrome C biogenesis protein transmembrane region RD07_RS18490 PF00892 EamA-like transporter family RD07_RS18495 PF00490 Delta-aminolevulinic acid dehydratase RD07_RS18500 PF01926 50S ribosome-binding GTPase RD07_RS18505 PF00034 Cytochrome c RD07_RS18510 PF05140 ResB-like family RD07_RS18515 PF01578 Cytochrome C assembly protein RD07_RS18520 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD07_RS18520 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RD07_RS18525 PF01491 Frataxin-like domain RD07_RS18530 PF00912 Transglycosylase RD07_RS18530 PF00905 Penicillin binding protein transpeptidase domain RD07_RS18530 PF17092 Penicillin-binding protein OB-like domain RD07_RS18535 PF01202 Shikimate kinase RD07_RS18540 PF01761 3-dehydroquinate synthase RD07_RS18545 PF13286 Phosphohydrolase-associated domain RD07_RS18545 PF01966 HD domain RD07_RS18550 PF13417 Glutathione S-transferase, N-terminal domain RD07_RS18550 PF00043 Glutathione S-transferase, C-terminal domain RD07_RS18555 PF17755 UvrA DNA-binding domain RD07_RS18555 PF17760 UvrA interaction domain RD07_RS18560 PF07690 Major Facilitator Superfamily RD07_RS18565 PF00436 Single-strand binding protein family RD07_RS18570 PF07715 TonB-dependent Receptor Plug Domain RD07_RS18570 PF00593 TonB dependent receptor RD07_RS18580 PF03328 HpcH/HpaI aldolase/citrate lyase family RD07_RS18590 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS18600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS18600 PF03466 LysR substrate binding domain RD07_RS18605 PF01979 Amidohydrolase family RD07_RS18610 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS18615 PF00534 Glycosyl transferases group 1 RD07_RS18615 PF13439 Glycosyltransferase Family 4 RD07_RS18625 PF03466 LysR substrate binding domain RD07_RS18625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS18635 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS18640 PF00005 ABC transporter RD07_RS18660 PF01274 Malate synthase RD07_RS18665 PF00392 Bacterial regulatory proteins, gntR family RD07_RS18665 PF07729 FCD domain RD07_RS18680 PF01040 UbiA prenyltransferase family RD07_RS18685 PF00155 Aminotransferase class I and II RD07_RS18690 PF13185 GAF domain RD07_RS18695 PF00701 Dihydrodipicolinate synthetase family RD07_RS18705 PF01476 LysM domain RD07_RS18705 PF04972 BON domain RD07_RS18710 PF02597 ThiS family RD07_RS18710 PF05690 Thiazole biosynthesis protein ThiG RD07_RS18715 PF00561 alpha/beta hydrolase fold RD07_RS18720 PF02390 Putative methyltransferase RD07_RS18735 PF00682 HMGL-like RD07_RS18740 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS18755 PF00392 Bacterial regulatory proteins, gntR family RD07_RS18755 PF07702 UTRA domain RD07_RS18760 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS18770 PF00392 Bacterial regulatory proteins, gntR family RD07_RS18770 PF07702 UTRA domain RD07_RS18775 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS18785 PF00005 ABC transporter RD07_RS18790 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS18795 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS18800 PF00109 Beta-ketoacyl synthase, N-terminal domain RD07_RS18800 PF02801 Beta-ketoacyl synthase, C-terminal domain RD07_RS18800 PF16197 Ketoacyl-synthetase C-terminal extension RD07_RS18800 PF00698 Acyl transferase domain RD07_RS18800 PF14765 Polyketide synthase dehydratase RD07_RS18800 PF08990 Erythronolide synthase docking RD07_RS18800 PF08240 Alcohol dehydrogenase GroES-like domain RD07_RS18800 PF00550 Phosphopantetheine attachment site RD07_RS18800 PF08659 KR domain RD07_RS18805 PF02515 CoA-transferase family III RD07_RS18810 PF00440 Bacterial regulatory proteins, tetR family RD07_RS18815 PF00293 NUDIX domain RD07_RS18815 PF09297 NADH pyrophosphatase zinc ribbon domain RD07_RS18820 PF00111 2Fe-2S iron-sulfur cluster binding domain RD07_RS18820 PF00970 Oxidoreductase FAD-binding domain RD07_RS18820 PF00175 Oxidoreductase NAD-binding domain RD07_RS18825 PF01425 Amidase RD07_RS18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD07_RS18835 PF03466 LysR substrate binding domain RD07_RS18840 PF13458 Periplasmic binding protein RD07_RS18850 PF00005 ABC transporter RD07_RS18860 PF02653 Branched-chain amino acid transport system / permease component RD07_RS18870 PF00355 Rieske [2Fe-2S] domain RD07_RS18885 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RD07_RS18885 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RD07_RS18900 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD07_RS18900 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD07_RS18900 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD07_RS18905 PF07690 Major Facilitator Superfamily RD07_RS18910 PF00132 Bacterial transferase hexapeptide (six repeats) RD07_RS18910 PF14602 Hexapeptide repeat of succinyl-transferase RD07_RS18910 PF12804 MobA-like NTP transferase domain RD07_RS18930 PF02630 SCO1/SenC RD07_RS18935 PF01040 UbiA prenyltransferase family RD07_RS18940 PF02628 Cytochrome oxidase assembly protein RD07_RS18960 PF00510 Cytochrome c oxidase subunit III RD07_RS18975 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD07_RS18980 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RD07_RS18980 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD07_RS18990 PF00999 Sodium/hydrogen exchanger family RD07_RS18995 PF00149 Calcineurin-like phosphoesterase RD07_RS19000 PF04545 Sigma-70, region 4 RD07_RS19000 PF00140 Sigma-70 factor, region 1.2 RD07_RS19000 PF04542 Sigma-70 region 2 RD07_RS19010 PF00756 Putative esterase RD07_RS19015 PF00107 Zinc-binding dehydrogenase RD07_RS19015 PF08240 Alcohol dehydrogenase GroES-like domain RD07_RS19025 PF00310 Glutamine amidotransferases class-II RD07_RS19025 PF04898 Glutamate synthase central domain RD07_RS19025 PF01645 Conserved region in glutamate synthase RD07_RS19025 PF01493 GXGXG motif RD07_RS19030 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD07_RS19030 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RD07_RS19035 PF03922 OmpW family RD07_RS19040 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS19045 PF00005 ABC transporter RD07_RS19050 PF02405 Permease MlaE RD07_RS19055 PF02470 MlaD protein RD07_RS19060 PF04333 MlaA lipoprotein RD07_RS19070 PF00005 ABC transporter RD07_RS19075 PF01061 ABC-2 type transporter RD07_RS19085 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD07_RS19090 PF01634 ATP phosphoribosyltransferase RD07_RS19095 PF00815 Histidinol dehydrogenase RD07_RS19100 PF00155 Aminotransferase class I and II RD07_RS19105 PF00475 Imidazoleglycerol-phosphate dehydratase RD07_RS19110 PF00117 Glutamine amidotransferase class-I RD07_RS19115 PF00977 Histidine biosynthesis protein RD07_RS19120 PF00977 Histidine biosynthesis protein RD07_RS19125 PF01502 Phosphoribosyl-AMP cyclohydrolase RD07_RS19130 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RD07_RS19135 PF01230 HIT domain RD07_RS19140 PF02416 mttA/Hcf106 family RD07_RS19145 PF02416 mttA/Hcf106 family RD07_RS19150 PF00902 Sec-independent protein translocase protein (TatC) RD07_RS19160 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS19165 PF02917 Pertussis toxin, subunit 1 RD07_RS19170 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD07_RS19170 PF03440 Aerolysin/Pertussis toxin (APT) domain RD07_RS19175 PF09275 Pertussis toxin S4 subunit RD07_RS19180 PF09276 Pertussis toxin S5 subunit RD07_RS19185 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD07_RS19185 PF03440 Aerolysin/Pertussis toxin (APT) domain RD07_RS19190 PF04956 TrbC/VIRB2 family RD07_RS19195 PF05101 Type IV secretory pathway, VirB3-like protein RD07_RS19200 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RD07_RS19205 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RD07_RS19215 PF04335 VirB8 protein RD07_RS19220 PF03524 Conjugal transfer protein RD07_RS19225 PF03743 Bacterial conjugation TrbI-like protein RD07_RS19230 PF00437 Type II/IV secretion system protein RD07_RS19240 PF00892 EamA-like transporter family RD07_RS19260 PF01926 50S ribosome-binding GTPase RD07_RS19260 PF12631 MnmE helical domain RD07_RS19260 PF10396 GTP-binding protein TrmE N-terminus RD07_RS19265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS19270 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS19275 PF12911 N-terminal TM domain of oligopeptide transport permease C RD07_RS19275 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS19280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS19280 PF00005 ABC transporter RD07_RS19290 PF01960 ArgJ family RD07_RS19300 PF00293 NUDIX domain RD07_RS19320 PF02321 Outer membrane efflux protein RD07_RS19325 PF00873 AcrB/AcrD/AcrF family RD07_RS19330 PF00873 AcrB/AcrD/AcrF family RD07_RS19335 PF13533 Biotin-lipoyl like RD07_RS19340 PF07072 Cell division protein RD07_RS19345 PF01121 Dephospho-CoA kinase RD07_RS19350 PF01478 Type IV leader peptidase family RD07_RS19350 PF06750 Bacterial Peptidase A24 N-terminal domain RD07_RS19365 PF02569 Pantoate-beta-alanine ligase RD07_RS19370 PF02616 Segregation and condensation protein ScpA RD07_RS19380 PF07690 Major Facilitator Superfamily RD07_RS19385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RD07_RS19385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RD07_RS19395 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS19400 PF00005 ABC transporter RD07_RS19405 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS19410 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS19415 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD07_RS19420 PF00005 ABC transporter RD07_RS19425 PF18075 FtsX extracellular domain RD07_RS19430 PF03975 CheD chemotactic sensory transduction RD07_RS19440 PF10576 Iron-sulfur binding domain of endonuclease III RD07_RS19440 PF00633 Helix-hairpin-helix motif RD07_RS19440 PF00730 HhH-GPD superfamily base excision DNA repair protein RD07_RS19440 PF14815 NUDIX domain RD07_RS19450 PF08241 Methyltransferase domain RD07_RS19460 PF02515 CoA-transferase family III RD07_RS19465 PF02515 CoA-transferase family III RD07_RS19475 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS19480 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS19485 PF00881 Nitroreductase family RD07_RS19495 PF00682 HMGL-like RD07_RS19500 PF00378 Enoyl-CoA hydratase/isomerase RD07_RS19505 PF02515 CoA-transferase family III RD07_RS19510 PF03401 Tripartite tricarboxylate transporter family receptor RD07_RS19520 PF06628 Catalase-related immune-responsive RD07_RS19520 PF00199 Catalase RD07_RS19525 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS19530 PF00005 ABC transporter RD07_RS19540 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD07_RS19545 PF07687 Peptidase dimerisation domain RD07_RS19545 PF01546 Peptidase family M20/M25/M40 RD07_RS19550 PF00005 ABC transporter RD07_RS19550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS19555 PF00005 ABC transporter RD07_RS19555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD07_RS19560 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS19560 PF12911 N-terminal TM domain of oligopeptide transport permease C RD07_RS19565 PF00528 Binding-protein-dependent transport system inner membrane component RD07_RS19570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD07_RS19575 PF01926 50S ribosome-binding GTPase RD07_RS19575 PF10396 GTP-binding protein TrmE N-terminus RD07_RS19575 PF12631 MnmE helical domain RD07_RS19585 PF00486 Transcriptional regulatory protein, C terminal RD07_RS19585 PF00072 Response regulator receiver domain RD07_RS19590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD07_RS19590 PF00512 His Kinase A (phospho-acceptor) domain RD07_RS19605 PF01970 Tripartite tricarboxylate transporter TctA family RD07_RS19610 PF00155 Aminotransferase class I and II RD07_RS19615 PF00313 'Cold-shock' DNA-binding domain