ABB88_RS00005	SM01228	ABB88_RS00005
ABB88_RS00025	SM00470	ParB-like nuclease domain
ABB88_RS00030	SM00870	ABB88_RS00030
ABB88_RS00070	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ABB88_RS00070	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ABB88_RS00075	SM00649	Ribosomal protein L11/L12
ABB88_RS00100	SM00663	RNA polymerase I subunit A N-terminus
ABB88_RS00130	SM00448	cheY-homologous receiver domain
ABB88_RS00130	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS00200	SM00563	Phosphate acyltransferases
ABB88_RS00240	SM00421	helix_turn_helix, Lux Regulon
ABB88_RS00290	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS00305	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS00400	SM00387	Histidine kinase-like ATPases
ABB88_RS00410	SM00644	ABB88_RS00410
ABB88_RS00425	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS00425	SM00962	SRP54-type protein, GTPase domain
ABB88_RS00425	SM00963	SRP54-type protein, helical bundle domain
ABB88_RS00525	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS00545	SM00936	Penicillin-binding protein 5, C-terminal domain 
ABB88_RS00565	SM00729	Elongator protein 3, MiaB family, Radical SAM
ABB88_RS00610	SM00836	DALR anticodon binding domain
ABB88_RS00610	SM01016	Arginyl tRNA synthetase N terminal dom
ABB88_RS00645	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS00660	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS00695	SM00917	LeuA allosteric (dimerisation) domain
ABB88_RS00750	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS00750	SM00895	ABB88_RS00750
ABB88_RS00780	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS00790	SM00797	Allophanate hydrolase subunit 2
ABB88_RS00795	SM00796	Allophanate hydrolase subunit 1
ABB88_RS00820	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS00820	SM00387	Histidine kinase-like ATPases
ABB88_RS00820	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS00825	SM00448	cheY-homologous receiver domain
ABB88_RS00825	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS00830	SM00091	PAS domain
ABB88_RS00830	SM00387	Histidine kinase-like ATPases
ABB88_RS00830	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS00835	SM00448	cheY-homologous receiver domain
ABB88_RS00835	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS00845	SM00978	ABB88_RS00845
ABB88_RS00870	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS00885	SM00487	DEAD-like helicases superfamily
ABB88_RS00885	SM00490	helicase superfamily c-terminal domain
ABB88_RS00930	SM00450	Rhodanese Homology Domain
ABB88_RS01025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS01025	SM00895	ABB88_RS01025
ABB88_RS01075	SM00882	Coenzyme A transferase
ABB88_RS01080	SM00882	Coenzyme A transferase
ABB88_RS01085	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS01105	SM00869	Autotransporter beta-domain
ABB88_RS01140	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS01140	SM00895	ABB88_RS01140
ABB88_RS01210	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS01210	SM00895	ABB88_RS01210
ABB88_RS01250	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS01265	SM00853	MutL C terminal dimerisation domain
ABB88_RS01265	SM01340	ABB88_RS01265
ABB88_RS01275	SM00646	ABB88_RS01275
ABB88_RS01355	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS01360	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS01445	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ABB88_RS01475	SM00342	helix_turn_helix, arabinose operon control protein
ABB88_RS01485	SM00342	helix_turn_helix, arabinose operon control protein
ABB88_RS01535	SM00347	helix_turn_helix multiple antibiotic resistance protein
ABB88_RS01560	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS01565	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS01635	SM00732	Likely ribonuclease with RNase H fold.
ABB88_RS01650	SM00563	Phosphate acyltransferases
ABB88_RS01700	SM00849	Metallo-beta-lactamase superfamily
ABB88_RS01730	SM00267	diguanylate cyclase
ABB88_RS01755	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS01775	SM00965	Secretin and TonB N terminus short domain
ABB88_RS01820	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS01820	SM00895	ABB88_RS01820
ABB88_RS01835	SM01236	ABB88_RS01835
ABB88_RS01855	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS01880	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ABB88_RS01895	SM00845	GatB domain
ABB88_RS01970	SM00749	bacterial OsmY and nodulation domain
ABB88_RS02035	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS02075	SM00450	Rhodanese Homology Domain
ABB88_RS02180	SM00479	ABB88_RS02180
ABB88_RS02260	SM00829	Enoylreductase
ABB88_RS02270	SM00881	CoA binding domain
ABB88_RS02300	SM00344	helix_turn_helix ASNC type
ABB88_RS02325	SM00881	CoA binding domain
ABB88_RS02335	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS02365	SM00937	ABB88_RS02365
ABB88_RS02395	SM01092	CO dehydrogenase flavoprotein C-terminal domain
ABB88_RS02400	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ABB88_RS02455	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS02475	SM00116	Domain in cystathionine beta-synthase and other proteins.
ABB88_RS02505	SM00834	Putative regulatory protein
ABB88_RS02525	SM00155	Phospholipase D. Active site motifs.
ABB88_RS02565	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS02680	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS02705	SM00487	DEAD-like helicases superfamily
ABB88_RS02705	SM00490	helicase superfamily c-terminal domain
ABB88_RS02725	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS02785	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ABB88_RS02795	SM00905	Dihydroneopterin aldolase
ABB88_RS02825	SM00925	MltA specific insert domain
ABB88_RS02900	SM00903	Flavin reductase like domain
ABB88_RS02925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS02925	SM00866	ABB88_RS02925
ABB88_RS02960	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS03050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS03050	SM00387	Histidine kinase-like ATPases
ABB88_RS03055	SM00448	cheY-homologous receiver domain
ABB88_RS03055	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS03095	SM00257	Lysin motif
ABB88_RS03100	SM00849	Metallo-beta-lactamase superfamily
ABB88_RS03180	SM00822	ABB88_RS03180
ABB88_RS03190	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS03195	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS03275	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS03275	SM00866	ABB88_RS03275
ABB88_RS03295	SM00422	helix_turn_helix, mercury resistance
ABB88_RS03325	SM00988	UreE urease accessory protein, N-terminal domain
ABB88_RS03380	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS03410	SM00984	UDP binding domain
ABB88_RS03470	SM00448	cheY-homologous receiver domain
ABB88_RS03470	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS03475	SM00387	Histidine kinase-like ATPases
ABB88_RS03475	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS03510	SM00849	Metallo-beta-lactamase superfamily
ABB88_RS03515	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ABB88_RS03515	SM01232	ABB88_RS03515
ABB88_RS03520	SM00028	Tetratricopeptide repeats
ABB88_RS03540	SM01400	ABB88_RS03540
ABB88_RS03645	SM00869	Autotransporter beta-domain
ABB88_RS03655	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS03695	SM00422	helix_turn_helix, mercury resistance
ABB88_RS03695	SM00530	Helix-turn-helix XRE-family like proteins 
ABB88_RS03740	SM00344	helix_turn_helix ASNC type
ABB88_RS03740	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS03785	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS03790	SM00155	Phospholipase D. Active site motifs.
ABB88_RS03800	SM00986	Uracil DNA glycosylase superfamily
ABB88_RS03800	SM00987	UreE urease accessory protein, C-terminal domain 
ABB88_RS03805	SM00487	DEAD-like helicases superfamily
ABB88_RS03805	SM00490	helicase superfamily c-terminal domain
ABB88_RS03860	SM00996	S-adenosyl-L-homocysteine hydrolase
ABB88_RS03860	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ABB88_RS03930	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS03945	SM00833	Cobalamin synthesis protein cobW C-terminal domain
ABB88_RS03960	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS03960	SM01086	C-terminal, D2-small domain, of ClpB protein
ABB88_RS04070	SM00344	helix_turn_helix ASNC type
ABB88_RS04105	SM00151	SWI complex, BAF60b domains
ABB88_RS04120	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS04190	SM00842	Cell division protein FtsA
ABB88_RS04195	SM00864	Tubulin/FtsZ family, GTPase domain
ABB88_RS04195	SM00865	Tubulin/FtsZ family, C-terminal domain
ABB88_RS04215	SM00957	SecA DEAD-like domain
ABB88_RS04215	SM00958	SecA preprotein cross-linking domain
ABB88_RS04245	SM00344	helix_turn_helix ASNC type
ABB88_RS04275	SM00955	ABB88_RS04275
ABB88_RS04305	SM00878	Biotin carboxylase C-terminal domain
ABB88_RS04385	SM00344	helix_turn_helix ASNC type
ABB88_RS04420	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS04420	SM00895	ABB88_RS04420
ABB88_RS04430	SM00487	DEAD-like helicases superfamily
ABB88_RS04430	SM00490	helicase superfamily c-terminal domain
ABB88_RS04450	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS04490	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ABB88_RS04520	SM00363	S4 RNA-binding domain
ABB88_RS04615	SM00387	Histidine kinase-like ATPases
ABB88_RS04620	SM00448	cheY-homologous receiver domain
ABB88_RS04645	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ABB88_RS04695	SM00257	Lysin motif
ABB88_RS04735	SM00528	Domain in histone-like proteins of HNS family
ABB88_RS04755	SM00912	haemagglutination activity domain
ABB88_RS04790	SM00342	helix_turn_helix, arabinose operon control protein
ABB88_RS04810	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ABB88_RS04810	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ABB88_RS04880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS04880	SM00895	ABB88_RS04880
ABB88_RS04920	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS04935	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS04970	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS04995	SM00248	ankyrin repeats
ABB88_RS05040	SM00344	helix_turn_helix ASNC type
ABB88_RS05065	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS05080	SM00829	Enoylreductase
ABB88_RS05105	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ABB88_RS05130	SM00822	ABB88_RS05130
ABB88_RS05215	SM00822	ABB88_RS05215
ABB88_RS05240	SM00422	helix_turn_helix, mercury resistance
ABB88_RS05270	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS05305	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS05305	SM00895	ABB88_RS05305
ABB88_RS05360	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS05360	SM00930	ABB88_RS05360
ABB88_RS05415	SM00116	Domain in cystathionine beta-synthase and other proteins.
ABB88_RS05415	SM00924	MgtE intracellular N domain
ABB88_RS05440	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS05455	SM00861	Transketolase, pyrimidine binding domain
ABB88_RS05490	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS05505	SM00670	Large family of predicted nucleotide-binding domains
ABB88_RS05590	SM00822	ABB88_RS05590
ABB88_RS05655	SM00357	Cold shock protein domain
ABB88_RS05665	SM01359	ABB88_RS05665
ABB88_RS05665	SM01360	ABB88_RS05665
ABB88_RS05675	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS05675	SM01086	C-terminal, D2-small domain, of ClpB protein
ABB88_RS05720	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS05725	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS05745	SM00869	Autotransporter beta-domain
ABB88_RS05755	SM00938	Nitrogen regulatory protein P-II
ABB88_RS05825	SM00422	helix_turn_helix, mercury resistance
ABB88_RS05850	SM00729	Elongator protein 3, MiaB family, Radical SAM
ABB88_RS05850	SM00876	Biotin and Thiamin Synthesis associated domain
ABB88_RS05900	SM00852	Probable molybdopterin binding domain
ABB88_RS05905	SM00852	Probable molybdopterin binding domain
ABB88_RS05910	SM00729	Elongator protein 3, MiaB family, Radical SAM
ABB88_RS05945	SM00938	Nitrogen regulatory protein P-II
ABB88_RS06005	SM00479	ABB88_RS06005
ABB88_RS06105	SM01211	ABB88_RS06105
ABB88_RS06110	SM00912	haemagglutination activity domain
ABB88_RS06125	SM00347	helix_turn_helix multiple antibiotic resistance protein
ABB88_RS06130	SM00530	Helix-turn-helix XRE-family like proteins 
ABB88_RS06135	SM01007	Class II Aldolase and Adducin N-terminal domain
ABB88_RS06170	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS06175	SM01130	ABB88_RS06175
ABB88_RS06220	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS06230	SM00420	helix_turn_helix, Deoxyribose operon repressor
ABB88_RS06230	SM01134	ABB88_RS06230
ABB88_RS06235	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS06240	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS06275	SM00344	helix_turn_helix ASNC type
ABB88_RS06315	SM00869	Autotransporter beta-domain
ABB88_RS06325	SM00116	Domain in cystathionine beta-synthase and other proteins.
ABB88_RS06325	SM01240	ABB88_RS06325
ABB88_RS06340	SM00530	Helix-turn-helix XRE-family like proteins 
ABB88_RS06365	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS06380	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS06425	SM00849	Metallo-beta-lactamase superfamily
ABB88_RS06425	SM01027	Beta-Casp domain
ABB88_RS06450	SM00342	helix_turn_helix, arabinose operon control protein
ABB88_RS06470	SM00829	Enoylreductase
ABB88_RS06480	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS06520	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS06525	SM00354	helix_turn _helix lactose operon repressor
ABB88_RS06585	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS06625	SM00873	B3/4 domain
ABB88_RS06625	SM00874	tRNA synthetase B5 domain
ABB88_RS06625	SM00896	Ferredoxin-fold anticodon binding domain
ABB88_RS06630	SM00411	bacterial (prokaryotic) histone like domain
ABB88_RS06635	SM00422	helix_turn_helix, mercury resistance
ABB88_RS06740	SM00822	ABB88_RS06740
ABB88_RS06755	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS06770	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS06770	SM00387	Histidine kinase-like ATPases
ABB88_RS06770	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS06775	SM00448	cheY-homologous receiver domain
ABB88_RS06775	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS06780	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS06810	SM00881	CoA binding domain
ABB88_RS06880	SM00858	ABB88_RS06880
ABB88_RS06890	SM00240	Forkhead associated domain
ABB88_RS06890	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS07040	SM00271	DnaJ molecular chaperone homology domain
ABB88_RS07065	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS07090	SM01329	ABB88_RS07090
ABB88_RS07110	SM00448	cheY-homologous receiver domain
ABB88_RS07110	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS07165	SM00463	Small MutS-related domain
ABB88_RS07175	SM00843	ABB88_RS07175
ABB88_RS07185	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS07215	SM00267	diguanylate cyclase
ABB88_RS07240	SM00342	helix_turn_helix, arabinose operon control protein
ABB88_RS07260	SM01006	Siderophore biosynthesis protein domain
ABB88_RS07310	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ABB88_RS07310	SM00267	diguanylate cyclase
ABB88_RS07330	SM00421	helix_turn_helix, Lux Regulon
ABB88_RS07330	SM00448	cheY-homologous receiver domain
ABB88_RS07335	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ABB88_RS07385	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS07400	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS07420	SM00834	Putative regulatory protein
ABB88_RS07435	SM00421	helix_turn_helix, Lux Regulon
ABB88_RS07465	SM00530	Helix-turn-helix XRE-family like proteins 
ABB88_RS07480	SM01001	AIR carboxylase
ABB88_RS07495	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS07500	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS07510	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS07510	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ABB88_RS07520	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS07610	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS07620	SM00493	ABB88_RS07620
ABB88_RS07695	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ABB88_RS07695	SM00534	ATPase domain of DNA mismatch repair MUTS family
ABB88_RS07700	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ABB88_RS07715	SM01130	ABB88_RS07715
ABB88_RS07735	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS07735	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ABB88_RS07745	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS07750	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ABB88_RS07750	SM00954	Region found in RelA / SpoT proteins
ABB88_RS07755	SM01409	ABB88_RS07755
ABB88_RS07760	SM00072	Guanylate kinase homologues.
ABB88_RS07775	SM00822	ABB88_RS07775
ABB88_RS07790	SM00530	Helix-turn-helix XRE-family like proteins 
ABB88_RS07825	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ABB88_RS07825	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS07830	SM00052	Putative diguanylate phosphodiesterase
ABB88_RS07830	SM00267	diguanylate cyclase
ABB88_RS07845	SM00729	Elongator protein 3, MiaB family, Radical SAM
ABB88_RS07850	SM01230	ABB88_RS07850
ABB88_RS07855	SM00091	PAS domain
ABB88_RS07855	SM00387	Histidine kinase-like ATPases
ABB88_RS07855	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS07860	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS07860	SM00448	cheY-homologous receiver domain
ABB88_RS07885	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS07930	SM00487	DEAD-like helicases superfamily
ABB88_RS07930	SM00490	helicase superfamily c-terminal domain
ABB88_RS07980	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS08005	SM00984	UDP binding domain
ABB88_RS08055	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS08060	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS08115	SM00327	von Willebrand factor (vWF) type A domain
ABB88_RS08120	SM00028	Tetratricopeptide repeats
ABB88_RS08120	SM00327	von Willebrand factor (vWF) type A domain
ABB88_RS08160	SM00421	helix_turn_helix, Lux Regulon
ABB88_RS08160	SM00448	cheY-homologous receiver domain
ABB88_RS08165	SM00869	Autotransporter beta-domain
ABB88_RS08170	SM00530	Helix-turn-helix XRE-family like proteins 
ABB88_RS08275	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ABB88_RS08290	SM00822	ABB88_RS08290
ABB88_RS08390	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS08395	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS08475	SM00248	ankyrin repeats
ABB88_RS08480	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS08485	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS08485	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ABB88_RS08495	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS08505	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ABB88_RS08545	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS08545	SM00895	ABB88_RS08545
ABB88_RS08590	SM00052	Putative diguanylate phosphodiesterase
ABB88_RS08595	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS08595	SM00073	Histidine Phosphotransfer domain
ABB88_RS08595	SM00091	PAS domain
ABB88_RS08595	SM00387	Histidine kinase-like ATPases
ABB88_RS08595	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS08595	SM00448	cheY-homologous receiver domain
ABB88_RS08600	SM00421	helix_turn_helix, Lux Regulon
ABB88_RS08600	SM00448	cheY-homologous receiver domain
ABB88_RS08705	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS08725	SM01091	Transporter associated domain
ABB88_RS08745	SM00028	Tetratricopeptide repeats
ABB88_RS08750	SM00840	ABB88_RS08750
ABB88_RS08755	SM00478	endonuclease III
ABB88_RS08870	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS08885	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS08890	SM00881	CoA binding domain
ABB88_RS08920	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ABB88_RS08945	SM00028	Tetratricopeptide repeats
ABB88_RS08960	SM00347	helix_turn_helix multiple antibiotic resistance protein
ABB88_RS08965	SM00421	helix_turn_helix, Lux Regulon
ABB88_RS08970	SM00421	helix_turn_helix, Lux Regulon
ABB88_RS09015	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS09035	SM00318	Staphylococcal nuclease homologues
ABB88_RS09055	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS09060	SM00347	helix_turn_helix multiple antibiotic resistance protein
ABB88_RS09105	SM00858	ABB88_RS09105
ABB88_RS09135	SM00028	Tetratricopeptide repeats
ABB88_RS09150	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS09180	SM00841	Elongation factor P, C-terminal
ABB88_RS09180	SM01185	ABB88_RS09180
ABB88_RS09240	SM00479	ABB88_RS09240
ABB88_RS09385	SM00347	helix_turn_helix multiple antibiotic resistance protein
ABB88_RS09390	SM00411	bacterial (prokaryotic) histone like domain
ABB88_RS09445	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS09465	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS09465	SM00895	ABB88_RS09465
ABB88_RS09510	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS09530	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS09565	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ABB88_RS09565	SM00465	GIY-YIG type nucleases (URI domain)
ABB88_RS09735	SM00822	ABB88_RS09735
ABB88_RS09825	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ABB88_RS09835	SM00342	helix_turn_helix, arabinose operon control protein
ABB88_RS09845	SM00464	Found in ATP-dependent protease La (LON)
ABB88_RS09880	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS09900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS09900	SM00895	ABB88_RS09900
ABB88_RS09915	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ABB88_RS09935	SM00342	helix_turn_helix, arabinose operon control protein
ABB88_RS09975	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS10080	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS10130	SM00400	zinc finger
ABB88_RS10130	SM00493	ABB88_RS10130
ABB88_RS10130	SM00766	DNA primase DnaG DnaB-binding
ABB88_RS10145	SM00788	Adenylosuccinate synthetase
ABB88_RS10155	SM00244	prohibitin homologues
ABB88_RS10160	SM00244	prohibitin homologues
ABB88_RS10180	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS10185	SM00564	beta-propeller repeat
ABB88_RS10215	SM00562	ABB88_RS10215
ABB88_RS10230	SM00448	cheY-homologous receiver domain
ABB88_RS10235	SM00387	Histidine kinase-like ATPases
ABB88_RS10235	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS10285	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ABB88_RS10335	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS10400	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS10400	SM00866	ABB88_RS10400
ABB88_RS10455	SM00271	DnaJ molecular chaperone homology domain
ABB88_RS10480	SM00226	Low molecular weight phosphatase family
ABB88_RS10485	SM00487	DEAD-like helicases superfamily
ABB88_RS10485	SM00490	helicase superfamily c-terminal domain
ABB88_RS10500	SM00869	Autotransporter beta-domain
ABB88_RS10530	SM00882	Coenzyme A transferase
ABB88_RS10535	SM00882	Coenzyme A transferase
ABB88_RS10590	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS10590	SM00464	Found in ATP-dependent protease La (LON)
ABB88_RS10595	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS10595	SM00994	ClpX C4-type zinc finger
ABB88_RS10595	SM01086	C-terminal, D2-small domain, of ClpB protein
ABB88_RS10625	SM00357	Cold shock protein domain
ABB88_RS10640	SM00869	Autotransporter beta-domain
ABB88_RS10675	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS10680	SM00965	Secretin and TonB N terminus short domain
ABB88_RS10710	SM00904	Riboflavin kinase
ABB88_RS10735	SM00344	helix_turn_helix ASNC type
ABB88_RS10800	SM00749	bacterial OsmY and nodulation domain
ABB88_RS10855	SM00422	helix_turn_helix, mercury resistance
ABB88_RS10880	SM00257	Lysin motif
ABB88_RS10895	SM01207	ABB88_RS10895
ABB88_RS10940	SM00347	helix_turn_helix multiple antibiotic resistance protein
ABB88_RS10975	SM00869	Autotransporter beta-domain
ABB88_RS10985	SM00155	Phospholipase D. Active site motifs.
ABB88_RS11000	SM01005	Alanine racemase, C-terminal domain
ABB88_RS11010	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS11010	SM00331	Sigma factor PP2C-like phosphatases
ABB88_RS11010	SM01049	ABB88_RS11010
ABB88_RS11085	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS11205	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ABB88_RS11205	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS11250	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS11265	SM00450	Rhodanese Homology Domain
ABB88_RS11280	SM00829	Enoylreductase
ABB88_RS11295	SM00347	helix_turn_helix multiple antibiotic resistance protein
ABB88_RS11315	SM01329	ABB88_RS11315
ABB88_RS11320	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS11340	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS11405	SM01209	ABB88_RS11405
ABB88_RS11405	SM01210	ABB88_RS11405
ABB88_RS11435	SM00869	Autotransporter beta-domain
ABB88_RS11475	SM00316	Ribosomal protein S1-like RNA-binding domain
ABB88_RS11495	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS11550	SM00481	DNA polymerase alpha chain like domain
ABB88_RS11560	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS11560	SM00487	DEAD-like helicases superfamily
ABB88_RS11560	SM00490	helicase superfamily c-terminal domain
ABB88_RS11560	SM00847	Helicase associated domain (HA2)  Add an annotation
ABB88_RS11625	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS11710	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS11710	SM00866	ABB88_RS11710
ABB88_RS11750	SM00981	ABB88_RS11750
ABB88_RS11805	SM00028	Tetratricopeptide repeats
ABB88_RS11805	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS11815	SM01192	ABB88_RS11815
ABB88_RS11815	SM01193	ABB88_RS11815
ABB88_RS11870	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS11885	SM00882	Coenzyme A transferase
ABB88_RS12045	SM00358	Double-stranded RNA binding motif
ABB88_RS12045	SM00535	Ribonuclease III family
ABB88_RS12055	SM00838	Elongation factor G C-terminus
ABB88_RS12060	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ABB88_RS12085	SM00825	Beta-ketoacyl synthase
ABB88_RS12095	SM00822	ABB88_RS12095
ABB88_RS12100	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ABB88_RS12135	SM00644	ABB88_RS12135
ABB88_RS12195	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ABB88_RS12200	SM01329	ABB88_RS12200
ABB88_RS12220	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS12255	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ABB88_RS12295	SM00852	Probable molybdopterin binding domain
ABB88_RS12315	SM00052	Putative diguanylate phosphodiesterase
ABB88_RS12335	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS12345	SM00855	Phosphoglycerate mutase family
ABB88_RS12355	SM00851	MGS-like domain
ABB88_RS12355	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ABB88_RS12360	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ABB88_RS12420	SM00267	diguanylate cyclase
ABB88_RS12425	SM00244	prohibitin homologues
ABB88_RS12485	SM00935	Outer membrane protein (OmpH-like)
ABB88_RS12495	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ABB88_RS12540	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ABB88_RS12635	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS12700	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ABB88_RS12700	SM00091	PAS domain
ABB88_RS12700	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ABB88_RS12700	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS12705	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ABB88_RS12705	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS12710	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ABB88_RS12710	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS12725	SM00047	Lysozyme subfamily 2
ABB88_RS12785	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS12785	SM00962	SRP54-type protein, GTPase domain
ABB88_RS12805	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS12815	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS12830	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ABB88_RS12850	SM00354	helix_turn _helix lactose operon repressor
ABB88_RS12875	SM00881	CoA binding domain
ABB88_RS12880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS12880	SM00895	ABB88_RS12880
ABB88_RS12905	SM00869	Autotransporter beta-domain
ABB88_RS12930	SM00155	Phospholipase D. Active site motifs.
ABB88_RS12975	SM00642	Alpha-amylase domain
ABB88_RS12980	SM00642	Alpha-amylase domain
ABB88_RS12985	SM00642	Alpha-amylase domain
ABB88_RS12990	SM00642	Alpha-amylase domain
ABB88_RS12995	SM00642	Alpha-amylase domain
ABB88_RS13005	SM00642	Alpha-amylase domain
ABB88_RS13025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS13155	SM00953	ABB88_RS13155
ABB88_RS13190	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS13240	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS13245	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS13280	SM00434	DNA Topoisomerase IV
ABB88_RS13290	SM00387	Histidine kinase-like ATPases
ABB88_RS13290	SM00433	TopoisomeraseII
ABB88_RS13300	SM00357	Cold shock protein domain
ABB88_RS13300	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS13300	SM00959	Rho termination factor, N-terminal domain
ABB88_RS13340	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ABB88_RS13340	SM00474	3'-5' exonuclease
ABB88_RS13340	SM00475	5'-3' exonuclease
ABB88_RS13340	SM00482	DNA polymerase A domain
ABB88_RS13380	SM00316	Ribosomal protein S1-like RNA-binding domain
ABB88_RS13390	SM00363	S4 RNA-binding domain
ABB88_RS13415	SM00833	Cobalamin synthesis protein cobW C-terminal domain
ABB88_RS13490	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS13495	SM00327	von Willebrand factor (vWF) type A domain
ABB88_RS13520	SM01005	Alanine racemase, C-terminal domain
ABB88_RS13555	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS13620	SM00869	Autotransporter beta-domain
ABB88_RS13625	SM00869	Autotransporter beta-domain
ABB88_RS13640	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS13640	SM01086	C-terminal, D2-small domain, of ClpB protein
ABB88_RS13645	SM00100	Cyclic nucleotide-monophosphate binding domain
ABB88_RS13645	SM00419	helix_turn_helix, cAMP Regulatory protein
ABB88_RS13715	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS13730	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS13790	SM01007	Class II Aldolase and Adducin N-terminal domain
ABB88_RS13815	SM00822	ABB88_RS13815
ABB88_RS13825	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ABB88_RS13880	SM00822	ABB88_RS13880
ABB88_RS13895	SM00363	S4 RNA-binding domain
ABB88_RS13905	SM00491	ABB88_RS13905
ABB88_RS13910	SM00316	Ribosomal protein S1-like RNA-binding domain
ABB88_RS13910	SM00732	Likely ribonuclease with RNase H fold.
ABB88_RS13975	SM00861	Transketolase, pyrimidine binding domain
ABB88_RS13985	SM00344	helix_turn_helix ASNC type
ABB88_RS13995	SM00919	Malic enzyme, NAD binding domain
ABB88_RS13995	SM01274	ABB88_RS13995
ABB88_RS14015	SM00481	DNA polymerase alpha chain like domain
ABB88_RS14025	SM00849	Metallo-beta-lactamase superfamily
ABB88_RS14050	SM00869	Autotransporter beta-domain
ABB88_RS14060	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS14085	SM00822	ABB88_RS14085
ABB88_RS14110	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS14130	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS14140	SM00052	Putative diguanylate phosphodiesterase
ABB88_RS14140	SM00267	diguanylate cyclase
ABB88_RS14140	SM00387	Histidine kinase-like ATPases
ABB88_RS14140	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS14145	SM00448	cheY-homologous receiver domain
ABB88_RS14145	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS14165	SM00116	Domain in cystathionine beta-synthase and other proteins.
ABB88_RS14205	SM01103	ABB88_RS14205
ABB88_RS14215	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS14260	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS14285	SM00919	Malic enzyme, NAD binding domain
ABB88_RS14285	SM01274	ABB88_RS14285
ABB88_RS14335	SM00869	Autotransporter beta-domain
ABB88_RS14365	SM01323	ABB88_RS14365
ABB88_RS14390	SM00729	Elongator protein 3, MiaB family, Radical SAM
ABB88_RS14405	SM01091	Transporter associated domain
ABB88_RS14445	SM00448	cheY-homologous receiver domain
ABB88_RS14450	SM00448	cheY-homologous receiver domain
ABB88_RS14460	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ABB88_RS14460	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS14465	SM00260	Two component signalling adaptor domain
ABB88_RS14470	SM00073	Histidine Phosphotransfer domain
ABB88_RS14470	SM00260	Two component signalling adaptor domain
ABB88_RS14470	SM00387	Histidine kinase-like ATPases
ABB88_RS14470	SM01231	ABB88_RS14470
ABB88_RS14475	SM00448	cheY-homologous receiver domain
ABB88_RS14510	SM00316	Ribosomal protein S1-like RNA-binding domain
ABB88_RS14530	SM00852	Probable molybdopterin binding domain
ABB88_RS14550	SM00271	DnaJ molecular chaperone homology domain
ABB88_RS14605	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ABB88_RS14610	SM00861	Transketolase, pyrimidine binding domain
ABB88_RS14645	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ABB88_RS14645	SM00091	PAS domain
ABB88_RS14645	SM00387	Histidine kinase-like ATPases
ABB88_RS14645	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS14650	SM00421	helix_turn_helix, Lux Regulon
ABB88_RS14650	SM00448	cheY-homologous receiver domain
ABB88_RS14695	SM00363	S4 RNA-binding domain
ABB88_RS14745	SM00729	Elongator protein 3, MiaB family, Radical SAM
ABB88_RS14760	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS14795	SM00893	Electron transfer flavoprotein domain
ABB88_RS14800	SM00893	Electron transfer flavoprotein domain
ABB88_RS14850	SM00411	bacterial (prokaryotic) histone like domain
ABB88_RS14855	SM00316	Ribosomal protein S1-like RNA-binding domain
ABB88_RS14875	SM00830	Chorismate mutase type II
ABB88_RS14885	SM00434	DNA Topoisomerase IV
ABB88_RS14995	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS15045	SM00878	Biotin carboxylase C-terminal domain
ABB88_RS15050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS15050	SM00866	ABB88_RS15050
ABB88_RS15130	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS15175	SM01387	ABB88_RS15175
ABB88_RS15180	SM00316	Ribosomal protein S1-like RNA-binding domain
ABB88_RS15180	SM00322	K homology RNA-binding domain
ABB88_RS15210	SM00829	Enoylreductase
ABB88_RS15235	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS15295	SM00450	Rhodanese Homology Domain
ABB88_RS15320	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS15380	SM00014	Acid phosphatase homologues
ABB88_RS15440	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
ABB88_RS15445	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
ABB88_RS15530	SM00487	DEAD-like helicases superfamily
ABB88_RS15530	SM00490	helicase superfamily c-terminal domain
ABB88_RS15530	SM00982	ABB88_RS15530
ABB88_RS15530	SM01058	CarD-like/TRCF domain
ABB88_RS15590	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS15610	SM00829	Enoylreductase
ABB88_RS15615	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS15615	SM00895	ABB88_RS15615
ABB88_RS15620	SM00869	Autotransporter beta-domain
ABB88_RS15625	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS15625	SM00895	ABB88_RS15625
ABB88_RS15655	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS15670	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS15690	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS15770	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ABB88_RS15775	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS15780	SM00530	Helix-turn-helix XRE-family like proteins 
ABB88_RS15795	SM00530	Helix-turn-helix XRE-family like proteins 
ABB88_RS15820	SM00965	Secretin and TonB N terminus short domain
ABB88_RS15825	SM00867	YceI-like domain 
ABB88_RS15855	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS15875	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS15940	SM00650	Ribosomal RNA adenine dimethylases
ABB88_RS15990	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS16045	SM00448	cheY-homologous receiver domain
ABB88_RS16045	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS16285	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS16290	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS16315	SM00947	Carbonic anhydrase
ABB88_RS16330	SM00341	Helicase and RNase D C-terminal
ABB88_RS16330	SM00487	DEAD-like helicases superfamily
ABB88_RS16330	SM00490	helicase superfamily c-terminal domain
ABB88_RS16330	SM00956	ABB88_RS16330
ABB88_RS16335	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS16350	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ABB88_RS16360	SM00798	AICARFT/IMPCHase bienzyme
ABB88_RS16360	SM00851	MGS-like domain
ABB88_RS16385	SM01011	Aminopeptidase P, N-terminal domain
ABB88_RS16460	SM00487	DEAD-like helicases superfamily
ABB88_RS16460	SM00490	helicase superfamily c-terminal domain
ABB88_RS16480	SM00852	Probable molybdopterin binding domain
ABB88_RS16485	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS16565	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS16565	SM00895	ABB88_RS16565
ABB88_RS16585	SM00919	Malic enzyme, NAD binding domain
ABB88_RS16585	SM01274	ABB88_RS16585
ABB88_RS16605	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS16635	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ABB88_RS16670	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS16670	SM00962	SRP54-type protein, GTPase domain
ABB88_RS16670	SM00963	SRP54-type protein, helical bundle domain
ABB88_RS16710	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS16750	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ABB88_RS16770	SM00869	Autotransporter beta-domain
ABB88_RS16780	SM00883	Chaperonin 10 Kd subunit
ABB88_RS16835	SM00267	diguanylate cyclase
ABB88_RS16840	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ABB88_RS16885	SM00155	Phospholipase D. Active site motifs.
ABB88_RS16920	SM01144	ABB88_RS16920
ABB88_RS16930	SM00316	Ribosomal protein S1-like RNA-binding domain
ABB88_RS16930	SM00357	Cold shock protein domain
ABB88_RS16930	SM00955	ABB88_RS16930
ABB88_RS16935	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ABB88_RS16945	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
ABB88_RS16950	SM00411	bacterial (prokaryotic) histone like domain
ABB88_RS16975	SM00448	cheY-homologous receiver domain
ABB88_RS16975	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS16980	SM00387	Histidine kinase-like ATPases
ABB88_RS16980	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS17035	SM01130	ABB88_RS17035
ABB88_RS17040	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS17040	SM00895	ABB88_RS17040
ABB88_RS17055	SM00342	helix_turn_helix, arabinose operon control protein
ABB88_RS17070	SM00387	Histidine kinase-like ATPases
ABB88_RS17070	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS17080	SM00448	cheY-homologous receiver domain
ABB88_RS17080	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS17090	SM00986	Uracil DNA glycosylase superfamily
ABB88_RS17090	SM00987	UreE urease accessory protein, C-terminal domain 
ABB88_RS17100	SM00968	SMC proteins Flexible Hinge Domain
ABB88_RS17105	SM00771	ZipA, C-terminal domain (FtsZ-binding)
ABB88_RS17110	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ABB88_RS17110	SM00292	breast cancer carboxy-terminal domain
ABB88_RS17110	SM00532	Ligase N family
ABB88_RS17135	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS17160	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS17190	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS17195	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS17200	SM00478	endonuclease III
ABB88_RS17200	SM00525	ABB88_RS17200
ABB88_RS17245	SM00954	Region found in RelA / SpoT proteins
ABB88_RS17285	SM00316	Ribosomal protein S1-like RNA-binding domain
ABB88_RS17290	SM00363	S4 RNA-binding domain
ABB88_RS17360	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ABB88_RS17375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS17375	SM00895	ABB88_RS17375
ABB88_RS17385	SM00357	Cold shock protein domain
ABB88_RS17455	SM00838	Elongation factor G C-terminus
ABB88_RS17455	SM00889	Elongation factor G, domain IV
ABB88_RS17460	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS17485	SM01130	ABB88_RS17485
ABB88_RS17545	SM00881	CoA binding domain
ABB88_RS17550	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS17560	SM00861	Transketolase, pyrimidine binding domain
ABB88_RS17600	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS17605	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS17635	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS17655	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ABB88_RS17655	SM00245	tail specific protease
ABB88_RS17665	SM00855	Phosphoglycerate mutase family
ABB88_RS17670	SM00450	Rhodanese Homology Domain
ABB88_RS17730	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS17750	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ABB88_RS17815	SM00347	helix_turn_helix multiple antibiotic resistance protein
ABB88_RS17830	SM00448	cheY-homologous receiver domain
ABB88_RS17835	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ABB88_RS17835	SM00387	Histidine kinase-like ATPases
ABB88_RS17835	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS17910	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS17930	SM00344	helix_turn_helix ASNC type
ABB88_RS17985	SM00729	Elongator protein 3, MiaB family, Radical SAM
ABB88_RS18005	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS18005	SM00895	ABB88_RS18005
ABB88_RS18050	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS18070	SM00869	Autotransporter beta-domain
ABB88_RS18100	SM01119	ABB88_RS18100
ABB88_RS18110	SM00244	prohibitin homologues
ABB88_RS18205	SM00387	Histidine kinase-like ATPases
ABB88_RS18205	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS18240	SM01234	ABB88_RS18240
ABB88_RS18255	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS18255	SM00760	Bacterial dnaA protein helix-turn-helix domain
ABB88_RS18260	SM00480	DNA polymerase III beta subunit
ABB88_RS18265	SM00387	Histidine kinase-like ATPases
ABB88_RS18265	SM00433	TopoisomeraseII
ABB88_RS18270	SM00346	helix_turn_helix isocitrate lyase regulation
ABB88_RS18295	SM00342	helix_turn_helix, arabinose operon control protein
ABB88_RS18295	SM00871	Bacterial transcription activator, effector binding domain
ABB88_RS18315	SM00422	helix_turn_helix, mercury resistance
ABB88_RS18320	SM00849	Metallo-beta-lactamase superfamily
ABB88_RS18350	SM00878	Biotin carboxylase C-terminal domain
ABB88_RS18350	SM01209	ABB88_RS18350
ABB88_RS18370	SM01119	ABB88_RS18370
ABB88_RS18405	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ABB88_RS18405	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ABB88_RS18405	SM00493	ABB88_RS18405
ABB88_RS18415	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS18445	SM00344	helix_turn_helix ASNC type
ABB88_RS18455	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
ABB88_RS18475	SM01018	B12 binding domain
ABB88_RS18555	SM00838	Elongation factor G C-terminus
ABB88_RS18555	SM00889	Elongation factor G, domain IV
ABB88_RS18565	SM01403	ABB88_RS18565
ABB88_RS18585	SM01382	ABB88_RS18585
ABB88_RS18585	SM01383	ABB88_RS18585
ABB88_RS18600	SM00322	K homology RNA-binding domain
ABB88_RS18635	SM01374	ABB88_RS18635
ABB88_RS18710	SM00363	S4 RNA-binding domain
ABB88_RS18710	SM01390	ABB88_RS18710
ABB88_RS18715	SM00662	RNA polymerases D
ABB88_RS18745	SM01004	Delta-aminolevulinic acid dehydratase
ABB88_RS18780	SM01219	ABB88_RS18780
ABB88_RS18800	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ABB88_RS18850	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS18850	SM00866	ABB88_RS18850
ABB88_RS18895	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS18920	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS18920	SM00895	ABB88_RS18920
ABB88_RS18950	SM01130	ABB88_RS18950
ABB88_RS18965	SM00257	Lysin motif
ABB88_RS19020	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS19030	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS19035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ABB88_RS19050	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS19065	SM00829	Enoylreductase
ABB88_RS19115	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS19165	SM00984	UDP binding domain
ABB88_RS19255	SM00100	Cyclic nucleotide-monophosphate binding domain
ABB88_RS19280	SM00829	Enoylreductase
ABB88_RS19310	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS19420	SM00530	Helix-turn-helix XRE-family like proteins 
ABB88_RS19510	SM00342	helix_turn_helix, arabinose operon control protein
ABB88_RS19625	SM00421	helix_turn_helix, Lux Regulon
ABB88_RS19665	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS19680	SM00062	Bacterial periplasmic substrate-binding proteins
ABB88_RS19685	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS19705	SM00478	endonuclease III
ABB88_RS19710	SM00530	Helix-turn-helix XRE-family like proteins 
ABB88_RS19785	SM01060	ABB88_RS19785
ABB88_RS19795	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS19815	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS19820	SM00382	ATPases associated with a variety of cellular activities
ABB88_RS19850	SM00448	cheY-homologous receiver domain
ABB88_RS19850	SM00862	Transcriptional regulatory protein, C terminal
ABB88_RS19855	SM00387	Histidine kinase-like ATPases
ABB88_RS19855	SM00388	His Kinase A (phosphoacceptor) domain
ABB88_RS19880	SM00357	Cold shock protein domain
