locus-tag class description RD08_RS00005 PF01134 Glucose inhibited division protein A RD08_RS00005 PF13932 GidA associated domain RD08_RS00010 PF02527 rRNA small subunit methyltransferase G RD08_RS00015 PF13614 AAA domain RD08_RS00025 PF02195 ParB-like nuclease domain RD08_RS00025 PF17762 HTH domain found in ParB protein RD08_RS00030 PF17763 Glutaminase/Asparaginase C-terminal domain RD08_RS00030 PF00710 Asparaginase, N-terminal RD08_RS00035 PF00710 Asparaginase, N-terminal RD08_RS00035 PF17763 Glutaminase/Asparaginase C-terminal domain RD08_RS00055 PF00009 Elongation factor Tu GTP binding domain RD08_RS00055 PF03144 Elongation factor Tu domain 2 RD08_RS00055 PF03143 Elongation factor Tu C-terminal domain RD08_RS00065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RD08_RS00070 PF00467 KOW motif RD08_RS00070 PF02357 Transcription termination factor nusG RD08_RS00075 PF00298 Ribosomal protein L11, RNA binding domain RD08_RS00075 PF03946 Ribosomal protein L11, N-terminal domain RD08_RS00080 PF00687 Ribosomal protein L1p/L10e family RD08_RS00085 PF00466 Ribosomal protein L10 RD08_RS00090 PF16320 Ribosomal protein L7/L12 dimerisation domain RD08_RS00090 PF00542 Ribosomal protein L7/L12 C-terminal domain RD08_RS00095 PF04561 RNA polymerase Rpb2, domain 2 RD08_RS00095 PF04565 RNA polymerase Rpb2, domain 3 RD08_RS00095 PF10385 RNA polymerase beta subunit external 1 domain RD08_RS00095 PF00562 RNA polymerase Rpb2, domain 6 RD08_RS00095 PF04560 RNA polymerase Rpb2, domain 7 RD08_RS00095 PF04563 RNA polymerase beta subunit RD08_RS00100 PF04998 RNA polymerase Rpb1, domain 5 RD08_RS00100 PF00623 RNA polymerase Rpb1, domain 2 RD08_RS00100 PF04983 RNA polymerase Rpb1, domain 3 RD08_RS00100 PF05000 RNA polymerase Rpb1, domain 4 RD08_RS00100 PF04997 RNA polymerase Rpb1, domain 1 RD08_RS00130 PF00072 Response regulator receiver domain RD08_RS00130 PF00486 Transcriptional regulatory protein, C terminal RD08_RS00140 PF02515 CoA-transferase family III RD08_RS00155 PF01575 MaoC like domain RD08_RS00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS00160 PF03466 LysR substrate binding domain RD08_RS00165 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS00185 PF02091 Glycyl-tRNA synthetase alpha subunit RD08_RS00190 PF02092 Glycyl-tRNA synthetase beta subunit RD08_RS00190 PF05746 DALR anticodon binding domain RD08_RS00200 PF01553 Acyltransferase RD08_RS00210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD08_RS00215 PF01327 Polypeptide deformylase RD08_RS00240 PF09518 HindIII restriction endonuclease RD08_RS00245 PF07549 SecD/SecF GG Motif RD08_RS00245 PF02355 Protein export membrane protein RD08_RS00250 PF01964 Radical SAM ThiC family RD08_RS00250 PF13667 ThiC-associated domain RD08_RS00255 PF00171 Aldehyde dehydrogenase family RD08_RS00260 PF01565 FAD binding domain RD08_RS00260 PF02913 FAD linked oxidases, C-terminal domain RD08_RS00285 PF06508 Queuosine biosynthesis protein QueC RD08_RS00290 PF00311 Phosphoenolpyruvate carboxylase RD08_RS00295 PF03797 Autotransporter beta-domain RD08_RS00295 PF00082 Subtilase family RD08_RS00300 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS00300 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS00305 PF02667 Short chain fatty acid transporter RD08_RS00315 PF01614 Bacterial transcriptional regulator RD08_RS00315 PF09339 IclR helix-turn-helix domain RD08_RS00320 PF01144 Coenzyme A transferase RD08_RS00325 PF01144 Coenzyme A transferase RD08_RS00330 PF02426 Muconolactone delta-isomerase RD08_RS00340 PF12146 Serine aminopeptidase, S33 RD08_RS00360 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS00370 PF02515 CoA-transferase family III RD08_RS00375 PF00392 Bacterial regulatory proteins, gntR family RD08_RS00375 PF07729 FCD domain RD08_RS00380 PF02347 Glycine cleavage system P-protein RD08_RS00385 PF01597 Glycine cleavage H-protein RD08_RS00390 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD08_RS00390 PF01571 Aminomethyltransferase folate-binding domain RD08_RS00395 PF02535 ZIP Zinc transporter RD08_RS00400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD08_RS00400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD08_RS00415 PF01276 Orn/Lys/Arg decarboxylase, major domain RD08_RS00415 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RD08_RS00415 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RD08_RS00440 PF00692 dUTPase RD08_RS00455 PF10609 NUBPL iron-transfer P-loop NTPase RD08_RS00465 PF09334 tRNA synthetases class I (M) RD08_RS00465 PF01588 Putative tRNA binding domain RD08_RS00470 PF00581 Rhodanese-like domain RD08_RS00470 PF17773 UPF0176 acylphosphatase like domain RD08_RS00495 PF00210 Ferritin-like domain RD08_RS00505 PF00009 Elongation factor Tu GTP binding domain RD08_RS00505 PF03144 Elongation factor Tu domain 2 RD08_RS00505 PF16658 Class II release factor RF3, C-terminal domain RD08_RS00510 PF01810 LysE type translocator RD08_RS00515 PF00271 Helicase conserved C-terminal domain RD08_RS00515 PF00270 DEAD/DEAH box helicase RD08_RS00525 PF04536 TPM domain RD08_RS00530 PF00005 ABC transporter RD08_RS00530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS00545 PF03109 ABC1 family RD08_RS00560 PF01209 ubiE/COQ5 methyltransferase family RD08_RS00565 PF00072 Response regulator receiver domain RD08_RS00565 PF00486 Transcriptional regulatory protein, C terminal RD08_RS00570 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS00570 PF00989 PAS fold RD08_RS00570 PF11808 Phosphate regulon sensor protein PhoR RD08_RS00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS00575 PF00072 Response regulator receiver domain RD08_RS00575 PF00486 Transcriptional regulatory protein, C terminal RD08_RS00580 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS00580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS00580 PF00672 HAMP domain RD08_RS00590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD08_RS00590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS00590 PF01842 ACT domain RD08_RS00595 PF03466 LysR substrate binding domain RD08_RS00595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS00605 PF02682 Carboxyltransferase domain, subdomain C and D RD08_RS00610 PF02626 Carboxyltransferase domain, subdomain A and B RD08_RS00615 PF03746 LamB/YcsF family RD08_RS00625 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS00630 PF01494 FAD binding domain RD08_RS00635 PF01494 FAD binding domain RD08_RS00640 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS00650 PF02515 CoA-transferase family III RD08_RS00655 PF00392 Bacterial regulatory proteins, gntR family RD08_RS00655 PF07729 FCD domain RD08_RS00670 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS00670 PF00585 C-terminal regulatory domain of Threonine dehydratase RD08_RS00675 PF13609 Gram-negative porin RD08_RS00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS00690 PF03466 LysR substrate binding domain RD08_RS00700 PF00309 Sigma-54 factor, Activator interacting domain (AID) RD08_RS00700 PF04963 Sigma-54 factor, core binding domain RD08_RS00700 PF04552 Sigma-54, DNA binding domain RD08_RS00710 PF00682 HMGL-like RD08_RS00710 PF08502 LeuA allosteric (dimerisation) domain RD08_RS00715 PF01425 Amidase RD08_RS00725 PF00356 Bacterial regulatory proteins, lacI family RD08_RS00740 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS00745 PF00005 ABC transporter RD08_RS00745 PF12857 TOBE-like domain RD08_RS00755 PF00149 Calcineurin-like phosphoesterase RD08_RS00760 PF00005 ABC transporter RD08_RS00760 PF17912 MalK OB fold domain RD08_RS00765 PF13416 Bacterial extracellular solute-binding protein RD08_RS00770 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS00775 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS00795 PF05746 DALR anticodon binding domain RD08_RS00795 PF00750 tRNA synthetases class I (R) RD08_RS00795 PF03485 Arginyl tRNA synthetase N terminal domain RD08_RS00805 PF00085 Thioredoxin RD08_RS00805 PF01323 DSBA-like thioredoxin domain RD08_RS00810 PF01053 Cys/Met metabolism PLP-dependent enzyme RD08_RS00825 PF16363 GDP-mannose 4,6 dehydratase RD08_RS00830 PF04321 RmlD substrate binding domain RD08_RS00835 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RD08_RS00840 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RD08_RS00840 PF04055 Radical SAM superfamily RD08_RS00845 PF03099 Biotin/lipoate A/B protein ligase family RD08_RS00850 PF04359 Protein of unknown function (DUF493) RD08_RS00855 PF01063 Amino-transferase class IV RD08_RS00860 PF07943 Penicillin-binding protein 5, C-terminal domain RD08_RS00860 PF00768 D-alanyl-D-alanine carboxypeptidase RD08_RS00885 PF00005 ABC transporter RD08_RS00890 PF02405 Permease MlaE RD08_RS00900 PF03309 Type III pantothenate kinase RD08_RS00910 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RD08_RS00910 PF00534 Glycosyl transferases group 1 RD08_RS00915 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD08_RS00920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RD08_RS00920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RD08_RS00925 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS00930 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD08_RS00935 PF02350 UDP-N-acetylglucosamine 2-epimerase RD08_RS00945 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD08_RS00950 PF02397 Bacterial sugar transferase RD08_RS00955 PF00862 Sucrose synthase RD08_RS00955 PF00534 Glycosyl transferases group 1 RD08_RS00960 PF10997 Alternate to MurJ RD08_RS00970 PF02719 Polysaccharide biosynthesis protein RD08_RS00985 PF00448 SRP54-type protein, GTPase domain RD08_RS00985 PF02978 Signal peptide binding domain RD08_RS00985 PF02881 SRP54-type protein, helical bundle domain RD08_RS00990 PF01578 Cytochrome C assembly protein RD08_RS01000 PF01510 N-acetylmuramoyl-L-alanine amidase RD08_RS01005 PF13417 Glutathione S-transferase, N-terminal domain RD08_RS01005 PF00043 Glutathione S-transferase, C-terminal domain RD08_RS01010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS01010 PF00183 Hsp90 protein RD08_RS01040 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS01050 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD08_RS01055 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS01055 PF00970 Oxidoreductase FAD-binding domain RD08_RS01055 PF00175 Oxidoreductase NAD-binding domain RD08_RS01070 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01100 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS01105 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS01110 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS01115 PF00005 ABC transporter RD08_RS01120 PF01177 Asp/Glu/Hydantoin racemase RD08_RS01130 PF07690 Major Facilitator Superfamily RD08_RS01140 PF07021 Methionine biosynthesis protein MetW RD08_RS01140 PF00561 alpha/beta hydrolase fold RD08_RS01145 PF00561 alpha/beta hydrolase fold RD08_RS01150 PF02615 Malate/L-lactate dehydrogenase RD08_RS01170 PF00561 alpha/beta hydrolase fold RD08_RS01190 PF02627 Carboxymuconolactone decarboxylase family RD08_RS01195 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD08_RS01195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD08_RS01200 PF07702 UTRA domain RD08_RS01200 PF00392 Bacterial regulatory proteins, gntR family RD08_RS01205 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS01210 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD08_RS01220 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01225 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RD08_RS01230 PF01743 Poly A polymerase head domain RD08_RS01230 PF12627 Probable RNA and SrmB- binding site of polymerase A RD08_RS01230 PF12626 Polymerase A arginine-rich C-terminus RD08_RS01240 PF00308 Bacterial dnaA protein RD08_RS01245 PF02769 AIR synthase related protein, C-terminal domain RD08_RS01245 PF00586 AIR synthase related protein, N-terminal domain RD08_RS01255 PF01119 DNA mismatch repair protein, C-terminal domain RD08_RS01255 PF08676 MutL C terminal dimerisation domain RD08_RS01260 PF09335 SNARE associated Golgi protein RD08_RS01265 PF11741 AMIN domain RD08_RS01265 PF01520 N-acetylmuramoyl-L-alanine amidase RD08_RS01270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RD08_RS01275 PF10415 Fumarase C C-terminus RD08_RS01275 PF00206 Lyase RD08_RS01285 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01290 PF03466 LysR substrate binding domain RD08_RS01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS01300 PF02515 CoA-transferase family III RD08_RS01305 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01310 PF18158 Adaptive response protein AidB N-terminal domain RD08_RS01310 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS01310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS01330 PF01654 Cytochrome bd terminal oxidase subunit I RD08_RS01335 PF02322 Cytochrome bd terminal oxidase subunit II RD08_RS01340 PF08173 Membrane bound YbgT-like protein RD08_RS01345 PF00005 ABC transporter RD08_RS01345 PF00664 ABC transporter transmembrane region RD08_RS01350 PF00005 ABC transporter RD08_RS01350 PF00664 ABC transporter transmembrane region RD08_RS01355 PF00156 Phosphoribosyl transferase domain RD08_RS01370 PF13609 Gram-negative porin RD08_RS01395 PF04386 Stringent starvation protein B RD08_RS01400 PF00043 Glutathione S-transferase, C-terminal domain RD08_RS01400 PF02798 Glutathione S-transferase, N-terminal domain RD08_RS01405 PF02167 Cytochrome C1 family RD08_RS01410 PF00032 Cytochrome b(C-terminal)/b6/petD RD08_RS01410 PF00033 Cytochrome b/b6/petB RD08_RS01415 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RD08_RS01415 PF00355 Rieske [2Fe-2S] domain RD08_RS01420 PF01741 Large-conductance mechanosensitive channel, MscL RD08_RS01425 PF01784 NIF3 (NGG1p interacting factor 3) RD08_RS01430 PF13180 PDZ domain RD08_RS01440 PF04299 Putative FMN-binding domain RD08_RS01445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS01450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS01455 PF07859 alpha/beta hydrolase fold RD08_RS01465 PF08502 LeuA allosteric (dimerisation) domain RD08_RS01465 PF00682 HMGL-like RD08_RS01470 PF12833 Helix-turn-helix domain RD08_RS01475 PF00920 Dehydratase family RD08_RS01480 PF07690 Major Facilitator Superfamily RD08_RS01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS01485 PF03466 LysR substrate binding domain RD08_RS01495 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RD08_RS01525 PF07859 alpha/beta hydrolase fold RD08_RS01535 PF02653 Branched-chain amino acid transport system / permease component RD08_RS01540 PF02653 Branched-chain amino acid transport system / permease component RD08_RS01540 PF11862 Domain of unknown function (DUF3382) RD08_RS01545 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS01545 PF00005 ABC transporter RD08_RS01550 PF00005 ABC transporter RD08_RS01565 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS01570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS01570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS01570 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS01575 PF13193 AMP-binding enzyme C-terminal domain RD08_RS01575 PF00501 AMP-binding enzyme RD08_RS01595 PF00202 Aminotransferase class-III RD08_RS01600 PF02581 Thiamine monophosphate synthase RD08_RS01605 PF08543 Phosphomethylpyrimidine kinase RD08_RS01610 PF00301 Rubredoxin RD08_RS01615 PF02622 Uncharacterized ACR, COG1678 RD08_RS01620 PF03652 Holliday junction resolvase RD08_RS01625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD08_RS01625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD08_RS01630 PF01979 Amidohydrolase family RD08_RS01635 PF01553 Acyltransferase RD08_RS01640 PF00149 Calcineurin-like phosphoesterase RD08_RS01650 PF00912 Transglycosylase RD08_RS01665 PF13193 AMP-binding enzyme C-terminal domain RD08_RS01665 PF00501 AMP-binding enzyme RD08_RS01670 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01685 PF12706 Beta-lactamase superfamily domain RD08_RS01690 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01710 PF00563 EAL domain RD08_RS01710 PF00990 Diguanylate cyclase, GGDEF domain RD08_RS01710 PF03707 Bacterial signalling protein N terminal repeat RD08_RS01715 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD08_RS01715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD08_RS01720 PF13532 2OG-Fe(II) oxygenase superfamily RD08_RS01725 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA RD08_RS01730 PF04463 Protein of unknown function (DUF523) RD08_RS01735 PF00005 ABC transporter RD08_RS01740 PF01032 FecCD transport family RD08_RS01745 PF01497 Periplasmic binding protein RD08_RS01750 PF05171 Haemin-degrading HemS.ChuX domain RD08_RS01755 PF00593 TonB dependent receptor RD08_RS01755 PF04886 PT repeat RD08_RS01755 PF07715 TonB-dependent Receptor Plug Domain RD08_RS01760 PF04773 FecR protein RD08_RS01760 PF16220 Domain of unknown function (DUF4880) RD08_RS01765 PF04542 Sigma-70 region 2 RD08_RS01765 PF08281 Sigma-70, region 4 RD08_RS01790 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD08_RS01800 PF07729 FCD domain RD08_RS01800 PF00392 Bacterial regulatory proteins, gntR family RD08_RS01820 PF00171 Aldehyde dehydrogenase family RD08_RS01830 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS01830 PF00175 Oxidoreductase NAD-binding domain RD08_RS01830 PF00970 Oxidoreductase FAD-binding domain RD08_RS01855 PF03458 UPF0126 domain RD08_RS01860 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD08_RS01860 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD08_RS01865 PF03372 Endonuclease/Exonuclease/phosphatase family RD08_RS01870 PF00156 Phosphoribosyl transferase domain RD08_RS01875 PF02637 GatB domain RD08_RS01875 PF02934 GatB/GatE catalytic domain RD08_RS01880 PF01425 Amidase RD08_RS01885 PF02686 Glu-tRNAGln amidotransferase C subunit RD08_RS01895 PF04085 rod shape-determining protein MreC RD08_RS01905 PF03717 Penicillin-binding Protein dimerisation domain RD08_RS01905 PF00905 Penicillin binding protein transpeptidase domain RD08_RS01910 PF01098 Cell cycle protein RD08_RS01915 PF02615 Malate/L-lactate dehydrogenase RD08_RS01920 PF00939 Sodium:sulfate symporter transmembrane region RD08_RS01925 PF00440 Bacterial regulatory proteins, tetR family RD08_RS01935 PF00696 Amino acid kinase family RD08_RS01940 PF03180 NLPA lipoprotein RD08_RS01945 PF00578 AhpC/TSA family RD08_RS01950 PF04972 BON domain RD08_RS01955 PF13580 SIS domain RD08_RS01960 PF02021 Uncharacterised protein family UPF0102 RD08_RS01965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD08_RS01970 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD08_RS01970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD08_RS01990 PF02515 CoA-transferase family III RD08_RS01995 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02000 PF02515 CoA-transferase family III RD08_RS02020 PF09339 IclR helix-turn-helix domain RD08_RS02025 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS02035 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS02040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS02040 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS02045 PF02515 CoA-transferase family III RD08_RS02050 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS02050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS02050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS02055 PF03466 LysR substrate binding domain RD08_RS02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS02065 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02075 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02085 PF00892 EamA-like transporter family RD08_RS02090 PF01810 LysE type translocator RD08_RS02095 PF12146 Serine aminopeptidase, S33 RD08_RS02110 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RD08_RS02115 PF00535 Glycosyl transferase family 2 RD08_RS02130 PF03616 Sodium/glutamate symporter RD08_RS02140 PF02667 Short chain fatty acid transporter RD08_RS02155 PF00929 Exonuclease RD08_RS02160 PF00873 AcrB/AcrD/AcrF family RD08_RS02180 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02185 PF03466 LysR substrate binding domain RD08_RS02185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS02190 PF01565 FAD binding domain RD08_RS02190 PF09330 D-lactate dehydrogenase, membrane binding RD08_RS02195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS02195 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS02195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS02200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS02200 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS02200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS02205 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02210 PF01546 Peptidase family M20/M25/M40 RD08_RS02210 PF07687 Peptidase dimerisation domain RD08_RS02220 PF01042 Endoribonuclease L-PSP RD08_RS02230 PF00107 Zinc-binding dehydrogenase RD08_RS02230 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS02235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS02235 PF03466 LysR substrate binding domain RD08_RS02240 PF13380 CoA binding domain RD08_RS02240 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS02245 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS02255 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02260 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RD08_RS02265 PF01380 SIS domain RD08_RS02270 PF01037 Lrp/AsnC ligand binding domain RD08_RS02275 PF00108 Thiolase, N-terminal domain RD08_RS02275 PF02803 Thiolase, C-terminal domain RD08_RS02280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS02280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS02280 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS02285 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD08_RS02285 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS02285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS02285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS02290 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02295 PF00583 Acetyltransferase (GNAT) family RD08_RS02295 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS02295 PF13380 CoA binding domain RD08_RS02310 PF00384 Molybdopterin oxidoreductase RD08_RS02310 PF01568 Molydopterin dinucleotide binding domain RD08_RS02330 PF01488 Shikimate / quinate 5-dehydrogenase RD08_RS02330 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RD08_RS02330 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RD08_RS02335 PF00472 RF-1 domain RD08_RS02335 PF03462 PCRF domain RD08_RS02340 PF05175 Methyltransferase small domain RD08_RS02340 PF17827 PrmC N-terminal domain RD08_RS02345 PF00462 Glutaredoxin RD08_RS02350 PF02441 Flavoprotein RD08_RS02355 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02360 PF09084 NMT1/THI5 like RD08_RS02365 PF00941 FAD binding domain in molybdopterin dehydrogenase RD08_RS02365 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD08_RS02370 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS02370 PF01799 [2Fe-2S] binding domain RD08_RS02375 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD08_RS02375 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD08_RS02395 PF03330 Lytic transglycolase RD08_RS02395 PF05036 Sporulation related domain RD08_RS02400 PF03668 P-loop ATPase protein family RD08_RS02410 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD08_RS02410 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD08_RS02410 PF00034 Cytochrome c RD08_RS02415 PF07475 HPr Serine kinase C-terminal domain RD08_RS02415 PF02603 HPr Serine kinase N terminus RD08_RS02420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RD08_RS02425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RD08_RS02430 PF00005 ABC transporter RD08_RS02450 PF01380 SIS domain RD08_RS02450 PF00571 CBS domain RD08_RS02455 PF01370 NAD dependent epimerase/dehydratase family RD08_RS02455 PF02222 ATP-grasp domain RD08_RS02460 PF00593 TonB dependent receptor RD08_RS02460 PF07715 TonB-dependent Receptor Plug Domain RD08_RS02470 PF05199 GMC oxidoreductase RD08_RS02470 PF00732 GMC oxidoreductase RD08_RS02490 PF02938 GAD domain RD08_RS02490 PF00152 tRNA synthetases class II (D, K and N) RD08_RS02490 PF01336 OB-fold nucleic acid binding domain RD08_RS02495 PF03372 Endonuclease/Exonuclease/phosphatase family RD08_RS02500 PF13091 PLD-like domain RD08_RS02525 PF13458 Periplasmic binding protein RD08_RS02530 PF01425 Amidase RD08_RS02535 PF05995 Cysteine dioxygenase type I RD08_RS02540 PF01614 Bacterial transcriptional regulator RD08_RS02540 PF09339 IclR helix-turn-helix domain RD08_RS02555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS02555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS02555 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS02560 PF05275 Copper resistance protein B precursor (CopB) RD08_RS02565 PF07732 Multicopper oxidase RD08_RS02565 PF07731 Multicopper oxidase RD08_RS02565 PF00394 Multicopper oxidase RD08_RS02595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS02595 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RD08_RS02595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS02600 PF02515 CoA-transferase family III RD08_RS02605 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS02605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS02605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS02620 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS02625 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS02630 PF01256 Carbohydrate kinase RD08_RS02650 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS02655 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS02655 PF12911 N-terminal TM domain of oligopeptide transport permease C RD08_RS02660 PF00005 ABC transporter RD08_RS02660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS02670 PF07687 Peptidase dimerisation domain RD08_RS02670 PF01546 Peptidase family M20/M25/M40 RD08_RS02680 PF13361 UvrD-like helicase C-terminal domain RD08_RS02680 PF00580 UvrD/REP helicase N-terminal domain RD08_RS02685 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RD08_RS02685 PF00271 Helicase conserved C-terminal domain RD08_RS02685 PF17764 3′ DNA-binding domain (3′BD) RD08_RS02685 PF00270 DEAD/DEAH box helicase RD08_RS02685 PF18074 Primosomal protein N C-terminal domain RD08_RS02690 PF01208 Uroporphyrinogen decarboxylase (URO-D) RD08_RS02700 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RD08_RS02705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD08_RS02705 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD08_RS02710 PF00231 ATP synthase RD08_RS02715 PF00306 ATP synthase alpha/beta chain, C terminal domain RD08_RS02715 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD08_RS02715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD08_RS02720 PF00213 ATP synthase delta (OSCP) subunit RD08_RS02725 PF00430 ATP synthase B/B' CF(0) RD08_RS02730 PF00137 ATP synthase subunit C RD08_RS02735 PF00119 ATP synthase A chain RD08_RS02760 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS02765 PF17820 PDZ domain RD08_RS02765 PF13180 PDZ domain RD08_RS02770 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS02770 PF13192 Thioredoxin domain RD08_RS02780 PF01171 PP-loop family RD08_RS02790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD08_RS02790 PF01842 ACT domain RD08_RS02790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS02795 PF10411 Disulfide bond isomerase protein N-terminus RD08_RS02795 PF13098 Thioredoxin-like domain RD08_RS02800 PF01494 FAD binding domain RD08_RS02805 PF03562 MltA specific insert domain RD08_RS02805 PF06725 3D domain RD08_RS02810 PF04379 ApaG domain RD08_RS02815 PF00834 Ribulose-phosphate 3 epimerase family RD08_RS02820 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS02825 PF04715 Anthranilate synthase component I, N terminal region RD08_RS02825 PF00425 chorismate binding enzyme RD08_RS02830 PF00117 Glutamine amidotransferase class-I RD08_RS02835 PF02885 Glycosyl transferase family, helical bundle domain RD08_RS02835 PF00591 Glycosyl transferase family, a/b domain RD08_RS02840 PF00218 Indole-3-glycerol phosphate synthase RD08_RS02865 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS02865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS02865 PF18158 Adaptive response protein AidB N-terminal domain RD08_RS02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS02870 PF03466 LysR substrate binding domain RD08_RS02875 PF00551 Formyl transferase RD08_RS02885 PF01613 Flavin reductase like domain RD08_RS02890 PF01243 Pyridoxamine 5'-phosphate oxidase RD08_RS02890 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RD08_RS02900 PF07690 Major Facilitator Superfamily RD08_RS02905 PF00899 ThiF family RD08_RS02910 PF07702 UTRA domain RD08_RS02910 PF00392 Bacterial regulatory proteins, gntR family RD08_RS02915 PF00501 AMP-binding enzyme RD08_RS02915 PF13193 AMP-binding enzyme C-terminal domain RD08_RS02920 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02935 PF01063 Amino-transferase class IV RD08_RS02940 PF04715 Anthranilate synthase component I, N terminal region RD08_RS02940 PF00425 chorismate binding enzyme RD08_RS02945 PF17755 UvrA DNA-binding domain RD08_RS02945 PF17760 UvrA interaction domain RD08_RS02945 PF00005 ABC transporter RD08_RS02955 PF03466 LysR substrate binding domain RD08_RS02955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS02960 PF00535 Glycosyl transferase family 2 RD08_RS02965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS02970 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS02980 PF00005 ABC transporter RD08_RS02980 PF12848 ABC transporter RD08_RS03000 PF03776 Septum formation topological specificity factor MinE RD08_RS03005 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RD08_RS03010 PF03775 Septum formation inhibitor MinC, C-terminal domain RD08_RS03010 PF05209 Septum formation inhibitor MinC, N-terminal domain RD08_RS03015 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD08_RS03015 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RD08_RS03020 PF01654 Cytochrome bd terminal oxidase subunit I RD08_RS03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS03030 PF13493 Domain of unknown function (DUF4118) RD08_RS03030 PF02702 Osmosensitive K+ channel His kinase sensor domain RD08_RS03035 PF00486 Transcriptional regulatory protein, C terminal RD08_RS03035 PF00072 Response regulator receiver domain RD08_RS03050 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS03055 PF04391 Protein of unknown function (DUF533) RD08_RS03075 PF01476 LysM domain RD08_RS03075 PF01464 Transglycosylase SLT domain RD08_RS03080 PF16123 Hydroxyacylglutathione hydrolase C-terminus RD08_RS03080 PF00753 Metallo-beta-lactamase superfamily RD08_RS03085 PF08241 Methyltransferase domain RD08_RS03090 PF00075 RNase H RD08_RS03135 PF01575 MaoC like domain RD08_RS03140 PF00108 Thiolase, N-terminal domain RD08_RS03140 PF02803 Thiolase, C-terminal domain RD08_RS03150 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS03155 PF00106 short chain dehydrogenase RD08_RS03165 PF00005 ABC transporter RD08_RS03165 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS03170 PF00005 ABC transporter RD08_RS03175 PF02653 Branched-chain amino acid transport system / permease component RD08_RS03185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS03185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS03185 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS03190 PF00440 Bacterial regulatory proteins, tetR family RD08_RS03190 PF08361 MAATS-type transcriptional repressor, C-terminal region RD08_RS03195 PF14535 AMP-binding enzyme C-terminal domain RD08_RS03195 PF00501 AMP-binding enzyme RD08_RS03200 PF02515 CoA-transferase family III RD08_RS03220 PF04285 Protein of unknown function (DUF444) RD08_RS03225 PF04293 SpoVR like protein RD08_RS03240 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS03245 PF05034 Methylaspartate ammonia-lyase N-terminus RD08_RS03245 PF07476 Methylaspartate ammonia-lyase C-terminus RD08_RS03250 PF07702 UTRA domain RD08_RS03250 PF00392 Bacterial regulatory proteins, gntR family RD08_RS03265 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS03270 PF09278 MerR, DNA binding RD08_RS03270 PF00376 MerR family regulatory protein RD08_RS03275 PF01774 UreD urease accessory protein RD08_RS03280 PF00547 Urease, gamma subunit RD08_RS03285 PF04955 HupE / UreJ protein RD08_RS03290 PF00699 Urease beta subunit RD08_RS03295 PF00449 Urease alpha-subunit, N-terminal domain RD08_RS03295 PF01979 Amidohydrolase family RD08_RS03300 PF05194 UreE urease accessory protein, C-terminal domain RD08_RS03300 PF02814 UreE urease accessory protein, N-terminal domain RD08_RS03305 PF01730 UreF RD08_RS03310 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD08_RS03325 PF07171 MlrC C-terminus RD08_RS03325 PF07364 Metallopeptidase family M81 RD08_RS03335 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS03340 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS03345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS03350 PF00171 Aldehyde dehydrogenase family RD08_RS03355 PF00202 Aminotransferase class-III RD08_RS03360 PF00392 Bacterial regulatory proteins, gntR family RD08_RS03360 PF00155 Aminotransferase class I and II RD08_RS03365 PF00186 Dihydrofolate reductase RD08_RS03370 PF00303 Thymidylate synthase RD08_RS03380 PF03232 Ubiquinone biosynthesis protein COQ7 RD08_RS03385 PF00953 Glycosyl transferase family 4 RD08_RS03390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD08_RS03390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD08_RS03390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD08_RS03395 PF01370 NAD dependent epimerase/dehydratase family RD08_RS03400 PF03023 Lipid II flippase MurJ RD08_RS03405 PF00534 Glycosyl transferases group 1 RD08_RS03405 PF13439 Glycosyltransferase Family 4 RD08_RS03410 PF13537 Glutamine amidotransferase domain RD08_RS03410 PF00733 Asparagine synthase RD08_RS03415 PF13439 Glycosyltransferase Family 4 RD08_RS03415 PF00534 Glycosyl transferases group 1 RD08_RS03420 PF00534 Glycosyl transferases group 1 RD08_RS03420 PF13439 Glycosyltransferase Family 4 RD08_RS03425 PF13477 Glycosyl transferase 4-like RD08_RS03425 PF00534 Glycosyl transferases group 1 RD08_RS03430 PF00342 Phosphoglucose isomerase RD08_RS03435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD08_RS03435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD08_RS03435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD08_RS03435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD08_RS03445 PF01565 FAD binding domain RD08_RS03445 PF02913 FAD linked oxidases, C-terminal domain RD08_RS03450 PF00486 Transcriptional regulatory protein, C terminal RD08_RS03450 PF00072 Response regulator receiver domain RD08_RS03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS03455 PF08521 Two-component sensor kinase N-terminal RD08_RS03455 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS03460 PF00884 Sulfatase RD08_RS03470 PF04209 homogentisate 1,2-dioxygenase RD08_RS03475 PF03466 LysR substrate binding domain RD08_RS03475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS03485 PF01494 FAD binding domain RD08_RS03495 PF06827 Zinc finger found in FPG and IleRS RD08_RS03495 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RD08_RS03495 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RD08_RS03505 PF03550 Outer membrane lipoprotein LolB RD08_RS03510 PF00288 GHMP kinases N terminal domain RD08_RS03510 PF08544 GHMP kinases C terminal RD08_RS03520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RD08_RS03520 PF14572 Phosphoribosyl synthetase-associated domain RD08_RS03525 PF14693 Ribosomal protein TL5, C-terminal domain RD08_RS03525 PF01386 Ribosomal L25p family RD08_RS03530 PF01195 Peptidyl-tRNA hydrolase RD08_RS03540 PF01926 50S ribosome-binding GTPase RD08_RS03540 PF06071 Protein of unknown function (DUF933) RD08_RS03545 PF13356 Arm DNA-binding domain RD08_RS03545 PF00589 Phage integrase family RD08_RS03560 PF01555 DNA methylase RD08_RS03565 PF13175 AAA ATPase domain RD08_RS03590 PF00580 UvrD/REP helicase N-terminal domain RD08_RS03590 PF13361 UvrD-like helicase C-terminal domain RD08_RS03605 PF12951 Passenger-associated-transport-repeat RD08_RS03615 PF00072 Response regulator receiver domain RD08_RS03615 PF00486 Transcriptional regulatory protein, C terminal RD08_RS03630 PF17938 Tetracyclin repressor-like, C-terminal domain RD08_RS03630 PF00440 Bacterial regulatory proteins, tetR family RD08_RS03655 PF01266 FAD dependent oxidoreductase RD08_RS03670 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS03680 PF01810 LysE type translocator RD08_RS03725 PF00561 alpha/beta hydrolase fold RD08_RS03735 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS03740 PF00005 ABC transporter RD08_RS03740 PF03459 TOBE domain RD08_RS03745 PF13091 PLD-like domain RD08_RS03755 PF03167 Uracil DNA glycosylase superfamily RD08_RS03760 PF00271 Helicase conserved C-terminal domain RD08_RS03760 PF00270 DEAD/DEAH box helicase RD08_RS03770 PF01743 Poly A polymerase head domain RD08_RS03770 PF12627 Probable RNA and SrmB- binding site of polymerase A RD08_RS03775 PF01464 Transglycosylase SLT domain RD08_RS03775 PF14718 Soluble lytic murein transglycosylase L domain RD08_RS03785 PF07690 Major Facilitator Superfamily RD08_RS03785 PF00083 Sugar (and other) transporter RD08_RS03790 PF00850 Histone deacetylase domain RD08_RS03795 PF03466 LysR substrate binding domain RD08_RS03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS03805 PF02219 Methylenetetrahydrofolate reductase RD08_RS03810 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RD08_RS03815 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RD08_RS03815 PF05221 S-adenosyl-L-homocysteine hydrolase RD08_RS03820 PF00534 Glycosyl transferases group 1 RD08_RS03820 PF13439 Glycosyltransferase Family 4 RD08_RS03830 PF00438 S-adenosylmethionine synthetase, N-terminal domain RD08_RS03830 PF02773 S-adenosylmethionine synthetase, C-terminal domain RD08_RS03830 PF02772 S-adenosylmethionine synthetase, central domain RD08_RS03840 PF03279 Bacterial lipid A biosynthesis acyltransferase RD08_RS03845 PF01678 Diaminopimelate epimerase RD08_RS03855 PF02899 Phage integrase, N-terminal SAM-like domain RD08_RS03855 PF00589 Phage integrase family RD08_RS03860 PF07715 TonB-dependent Receptor Plug Domain RD08_RS03860 PF00593 TonB dependent receptor RD08_RS03865 PF03824 High-affinity nickel-transport protein RD08_RS03875 PF01297 Zinc-uptake complex component A periplasmic RD08_RS03880 PF00950 ABC 3 transport family RD08_RS03885 PF00005 ABC transporter RD08_RS03895 PF01475 Ferric uptake regulator family RD08_RS03900 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD08_RS03900 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD08_RS03905 PF01258 Prokaryotic dksA/traR C4-type zinc finger RD08_RS03910 PF00227 Proteasome subunit RD08_RS03915 PF10431 C-terminal, D2-small domain, of ClpB protein RD08_RS03915 PF07724 AAA domain (Cdc48 subfamily) RD08_RS03915 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS03925 PF01923 Cobalamin adenosyltransferase RD08_RS03940 PF02525 Flavodoxin-like fold RD08_RS03945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD08_RS03945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD08_RS03955 PF01970 Tripartite tricarboxylate transporter TctA family RD08_RS03995 PF01790 Prolipoprotein diacylglyceryl transferase RD08_RS04000 PF00920 Dehydratase family RD08_RS04005 PF00034 Cytochrome c RD08_RS04010 PF01625 Peptide methionine sulfoxide reductase RD08_RS04015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD08_RS04020 PF01037 Lrp/AsnC ligand binding domain RD08_RS04060 PF07687 Peptidase dimerisation domain RD08_RS04060 PF01546 Peptidase family M20/M25/M40 RD08_RS04065 PF01979 Amidohydrolase family RD08_RS04070 PF16326 ABC transporter C-terminal domain RD08_RS04070 PF12848 ABC transporter RD08_RS04070 PF00005 ABC transporter RD08_RS04080 PF02381 MraZ protein, putative antitoxin-like RD08_RS04085 PF01795 MraW methylase family RD08_RS04090 PF04999 Cell division protein FtsL RD08_RS04095 PF00905 Penicillin binding protein transpeptidase domain RD08_RS04095 PF03717 Penicillin-binding Protein dimerisation domain RD08_RS04100 PF02875 Mur ligase family, glutamate ligase domain RD08_RS04100 PF08245 Mur ligase middle domain RD08_RS04105 PF00953 Glycosyl transferase family 4 RD08_RS04110 PF02875 Mur ligase family, glutamate ligase domain RD08_RS04110 PF08245 Mur ligase middle domain RD08_RS04115 PF01098 Cell cycle protein RD08_RS04120 PF03033 Glycosyltransferase family 28 N-terminal domain RD08_RS04120 PF04101 Glycosyltransferase family 28 C-terminal domain RD08_RS04125 PF08245 Mur ligase middle domain RD08_RS04125 PF01225 Mur ligase family, catalytic domain RD08_RS04125 PF02875 Mur ligase family, glutamate ligase domain RD08_RS04130 PF01820 D-ala D-ala ligase N-terminus RD08_RS04130 PF07478 D-ala D-ala ligase C-terminus RD08_RS04135 PF03799 Cell division protein FtsQ RD08_RS04135 PF08478 POTRA domain, FtsQ-type RD08_RS04140 PF02491 SHS2 domain inserted in FTSA RD08_RS04145 PF00091 Tubulin/FtsZ family, GTPase domain RD08_RS04145 PF12327 FtsZ family, C-terminal domain RD08_RS04150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RD08_RS04160 PF01476 LysM domain RD08_RS04160 PF08525 Opacity-associated protein A N-terminal motif RD08_RS04160 PF01551 Peptidase family M23 RD08_RS04165 PF07516 SecA Wing and Scaffold domain RD08_RS04165 PF07517 SecA DEAD-like domain RD08_RS04165 PF01043 SecA preprotein cross-linking domain RD08_RS04165 PF02810 SEC-C motif RD08_RS04175 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS04185 PF00106 short chain dehydrogenase RD08_RS04190 PF01266 FAD dependent oxidoreductase RD08_RS04195 PF01037 Lrp/AsnC ligand binding domain RD08_RS04205 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RD08_RS04215 PF08501 Shikimate dehydrogenase substrate binding domain RD08_RS04215 PF01488 Shikimate / quinate 5-dehydrogenase RD08_RS04215 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RD08_RS04225 PF00773 RNB domain RD08_RS04230 PF05728 Uncharacterised protein family (UPF0227) RD08_RS04235 PF08245 Mur ligase middle domain RD08_RS04235 PF02875 Mur ligase family, glutamate ligase domain RD08_RS04235 PF01225 Mur ligase family, catalytic domain RD08_RS04240 PF08534 Redoxin RD08_RS04245 PF01220 Dehydroquinase class II RD08_RS04250 PF00364 Biotin-requiring enzyme RD08_RS04255 PF00289 Biotin carboxylase, N-terminal domain RD08_RS04255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS04255 PF02785 Biotin carboxylase C-terminal domain RD08_RS04270 PF00294 pfkB family carbohydrate kinase RD08_RS04295 PF03062 MBOAT, membrane-bound O-acyltransferase family RD08_RS04300 PF00501 AMP-binding enzyme RD08_RS04300 PF13193 AMP-binding enzyme C-terminal domain RD08_RS04315 PF00268 Ribonucleotide reductase, small chain RD08_RS04320 PF02867 Ribonucleotide reductase, barrel domain RD08_RS04320 PF03477 ATP cone domain RD08_RS04320 PF00317 Ribonucleotide reductase, all-alpha domain RD08_RS04335 PF01037 Lrp/AsnC ligand binding domain RD08_RS04350 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD08_RS04355 PF00583 Acetyltransferase (GNAT) family RD08_RS04355 PF13380 CoA binding domain RD08_RS04355 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS04365 PF07729 FCD domain RD08_RS04365 PF00392 Bacterial regulatory proteins, gntR family RD08_RS04375 PF00271 Helicase conserved C-terminal domain RD08_RS04375 PF00270 DEAD/DEAH box helicase RD08_RS04375 PF03880 DbpA RNA binding domain RD08_RS04380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD08_RS04385 PF00857 Isochorismatase family RD08_RS04390 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS04395 PF00005 ABC transporter RD08_RS04405 PF02230 Phospholipase/Carboxylesterase RD08_RS04410 PF04751 Protein of unknown function (DUF615) RD08_RS04415 PF01523 Putative modulator of DNA gyrase RD08_RS04420 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS04425 PF00572 Ribosomal protein L13 RD08_RS04430 PF00380 Ribosomal protein S9/S16 RD08_RS04435 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD08_RS04435 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD08_RS04445 PF01521 Iron-sulphur cluster biosynthesis RD08_RS04450 PF03702 Anhydro-N-acetylmuramic acid kinase RD08_RS04455 PF01551 Peptidase family M23 RD08_RS04455 PF08460 Bacterial SH3 domain RD08_RS04465 PF01479 S4 domain RD08_RS04465 PF00579 tRNA synthetases class I (W and Y) RD08_RS04475 PF00464 Serine hydroxymethyltransferase RD08_RS04480 PF03477 ATP cone domain RD08_RS04495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD08_RS04495 PF01872 RibD C-terminal domain RD08_RS04510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS04510 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS04510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS04510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS04510 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS04510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS04520 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS04525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS04525 PF03466 LysR substrate binding domain RD08_RS04530 PF02515 CoA-transferase family III RD08_RS04550 PF05726 Pirin C-terminal cupin domain RD08_RS04550 PF02678 Pirin RD08_RS04565 PF00072 Response regulator receiver domain RD08_RS04570 PF06481 COX Aromatic Rich Motif RD08_RS04570 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD08_RS04575 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD08_RS04580 PF00510 Cytochrome c oxidase subunit III RD08_RS04585 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD08_RS04590 PF01022 Bacterial regulatory protein, arsR family RD08_RS04610 PF05114 Protein of unknown function (DUF692) RD08_RS04625 PF07715 TonB-dependent Receptor Plug Domain RD08_RS04625 PF00593 TonB dependent receptor RD08_RS04640 PF01551 Peptidase family M23 RD08_RS04640 PF01476 LysM domain RD08_RS04655 PF04461 Protein of unknown function (DUF520) RD08_RS04665 PF08281 Sigma-70, region 4 RD08_RS04665 PF04542 Sigma-70 region 2 RD08_RS04685 PF00795 Carbon-nitrogen hydrolase RD08_RS04690 PF01523 Putative modulator of DNA gyrase RD08_RS04695 PF00793 DAHP synthetase I family RD08_RS04700 PF13018 Extended Signal Peptide of Type V secretion system RD08_RS04700 PF13332 Hemagglutinin repeat RD08_RS04700 PF05594 Haemagluttinin repeat RD08_RS04700 PF13018 Extended Signal Peptide of Type V secretion system RD08_RS04700 PF05594 Haemagluttinin repeat RD08_RS04700 PF13332 Hemagglutinin repeat RD08_RS04700 PF05860 haemagglutination activity domain RD08_RS04700 PF05860 haemagglutination activity domain RD08_RS04705 PF02913 FAD linked oxidases, C-terminal domain RD08_RS04705 PF01565 FAD binding domain RD08_RS04710 PF02913 FAD linked oxidases, C-terminal domain RD08_RS04710 PF01565 FAD binding domain RD08_RS04715 PF01565 FAD binding domain RD08_RS04720 PF13183 4Fe-4S dicluster domain RD08_RS04720 PF02754 Cysteine-rich domain RD08_RS04725 PF00756 Putative esterase RD08_RS04730 PF00593 TonB dependent receptor RD08_RS04730 PF07715 TonB-dependent Receptor Plug Domain RD08_RS04740 PF02233 NAD(P) transhydrogenase beta subunit RD08_RS04745 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RD08_RS04745 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RD08_RS04755 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS04760 PF03466 LysR substrate binding domain RD08_RS04760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS04770 PF01925 Sulfite exporter TauE/SafE RD08_RS04775 PF00043 Glutathione S-transferase, C-terminal domain RD08_RS04775 PF13417 Glutathione S-transferase, N-terminal domain RD08_RS04780 PF00206 Lyase RD08_RS04780 PF08328 Adenylosuccinate lyase C-terminal RD08_RS04785 PF01322 Cytochrome C' RD08_RS04805 PF01594 AI-2E family transporter RD08_RS04815 PF00392 Bacterial regulatory proteins, gntR family RD08_RS04815 PF07729 FCD domain RD08_RS04825 PF01425 Amidase RD08_RS04830 PF02515 CoA-transferase family III RD08_RS04835 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS04850 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS04855 PF00005 ABC transporter RD08_RS04870 PF01614 Bacterial transcriptional regulator RD08_RS04870 PF09339 IclR helix-turn-helix domain RD08_RS04880 PF00501 AMP-binding enzyme RD08_RS04880 PF13193 AMP-binding enzyme C-terminal domain RD08_RS04885 PF01042 Endoribonuclease L-PSP RD08_RS04890 PF02653 Branched-chain amino acid transport system / permease component RD08_RS04905 PF00005 ABC transporter RD08_RS04910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD08_RS04925 PF03466 LysR substrate binding domain RD08_RS04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS04935 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD08_RS04940 PF07690 Major Facilitator Superfamily RD08_RS04945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS04945 PF03466 LysR substrate binding domain RD08_RS04960 PF01425 Amidase RD08_RS04965 PF00677 Lumazine binding domain RD08_RS04970 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS04975 PF13404 AsnC-type helix-turn-helix domain RD08_RS04975 PF01037 Lrp/AsnC ligand binding domain RD08_RS04985 PF00501 AMP-binding enzyme RD08_RS04985 PF13193 AMP-binding enzyme C-terminal domain RD08_RS04995 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05000 PF00005 ABC transporter RD08_RS05015 PF00107 Zinc-binding dehydrogenase RD08_RS05015 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS05035 PF00403 Heavy-metal-associated domain RD08_RS05040 PF01966 HD domain RD08_RS05045 PF00155 Aminotransferase class I and II RD08_RS05050 PF03466 LysR substrate binding domain RD08_RS05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS05060 PF00083 Sugar (and other) transporter RD08_RS05080 PF13609 Gram-negative porin RD08_RS05085 PF02548 Ketopantoate hydroxymethyltransferase RD08_RS05090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS05090 PF03466 LysR substrate binding domain RD08_RS05135 PF00440 Bacterial regulatory proteins, tetR family RD08_RS05145 PF05170 AsmA family RD08_RS05150 PF03352 Methyladenine glycosylase RD08_RS05155 PF09278 MerR, DNA binding RD08_RS05155 PF00376 MerR family regulatory protein RD08_RS05170 PF01547 Bacterial extracellular solute-binding protein RD08_RS05180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS05180 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS05185 PF08402 TOBE domain RD08_RS05185 PF00005 ABC transporter RD08_RS05190 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05195 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05195 PF14785 Maltose transport system permease protein MalF P2 domain RD08_RS05220 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS05225 PF07729 FCD domain RD08_RS05225 PF00392 Bacterial regulatory proteins, gntR family RD08_RS05250 PF00465 Iron-containing alcohol dehydrogenase RD08_RS05265 PF03180 NLPA lipoprotein RD08_RS05270 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05275 PF00005 ABC transporter RD08_RS05275 PF09383 NIL domain RD08_RS05280 PF13802 Galactose mutarotase-like RD08_RS05280 PF01055 Glycosyl hydrolases family 31 RD08_RS05290 PF00459 Inositol monophosphatase family RD08_RS05300 PF00501 AMP-binding enzyme RD08_RS05300 PF13193 AMP-binding enzyme C-terminal domain RD08_RS05305 PF07687 Peptidase dimerisation domain RD08_RS05305 PF01546 Peptidase family M20/M25/M40 RD08_RS05310 PF03466 LysR substrate binding domain RD08_RS05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS05315 PF03601 Conserved hypothetical protein 698 RD08_RS05320 PF03061 Thioesterase superfamily RD08_RS05325 PF03448 MgtE intracellular N domain RD08_RS05325 PF00571 CBS domain RD08_RS05325 PF01769 Divalent cation transporter RD08_RS05345 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS05355 PF02609 Exonuclease VII small subunit RD08_RS05360 PF00348 Polyprenyl synthetase RD08_RS05365 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RD08_RS05365 PF02780 Transketolase, C-terminal domain RD08_RS05365 PF02779 Transketolase, pyrimidine binding domain RD08_RS05370 PF02649 Type I GTP cyclohydrolase folE2 RD08_RS05375 PF01250 Ribosomal protein S6 RD08_RS05385 PF01084 Ribosomal protein S18 RD08_RS05390 PF01281 Ribosomal protein L9, N-terminal domain RD08_RS05390 PF03948 Ribosomal protein L9, C-terminal domain RD08_RS05400 PF03796 DnaB-like helicase C terminal domain RD08_RS05400 PF00772 DnaB-like helicase N terminal domain RD08_RS05405 PF13593 SBF-like CPA transporter family (DUF4137) RD08_RS05410 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD08_RS05415 PF13638 PIN domain RD08_RS05415 PF02562 PhoH-like protein RD08_RS05420 PF00578 AhpC/TSA family RD08_RS05425 PF04430 Protein of unknown function (DUF498/DUF598) RD08_RS05430 PF00155 Aminotransferase class I and II RD08_RS05435 PF00742 Homoserine dehydrogenase RD08_RS05435 PF01842 ACT domain RD08_RS05435 PF03447 Homoserine dehydrogenase, NAD binding domain RD08_RS05440 PF14821 Threonine synthase N terminus RD08_RS05440 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS05455 PF02615 Malate/L-lactate dehydrogenase RD08_RS05465 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS05480 PF03328 HpcH/HpaI aldolase/citrate lyase family RD08_RS05485 PF01649 Ribosomal protein S20 RD08_RS05495 PF03023 Lipid II flippase MurJ RD08_RS05500 PF00106 short chain dehydrogenase RD08_RS05505 PF05191 Adenylate kinase, active site lid RD08_RS05510 PF02348 Cytidylyltransferase RD08_RS05515 PF03966 Trm112p-like protein RD08_RS05520 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RD08_RS05525 PF02472 Biopolymer transport protein ExbD/TolR RD08_RS05530 PF01618 MotA/TolQ/ExbB proton channel family RD08_RS05540 PF13742 OB-fold nucleic acid binding domain RD08_RS05540 PF02601 Exonuclease VII, large subunit RD08_RS05545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD08_RS05545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD08_RS05550 PF00654 Voltage gated chloride channel RD08_RS05555 PF00108 Thiolase, N-terminal domain RD08_RS05555 PF02803 Thiolase, C-terminal domain RD08_RS05565 PF00313 'Cold-shock' DNA-binding domain RD08_RS05570 PF02617 ATP-dependent Clp protease adaptor protein ClpS RD08_RS05575 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RD08_RS05575 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RD08_RS05575 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RD08_RS05575 PF07703 Alpha-2-macroglobulin bait region domain RD08_RS05575 PF00207 Alpha-2-macroglobulin family RD08_RS05575 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RD08_RS05575 PF01835 MG2 domain RD08_RS05575 PF17962 Bacterial macroglobulin domain 6 RD08_RS05580 PF06832 Penicillin-Binding Protein C-terminus Family RD08_RS05580 PF00912 Transglycosylase RD08_RS05580 PF00905 Penicillin binding protein transpeptidase domain RD08_RS05585 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS05585 PF02861 Clp amino terminal domain, pathogenicity island component RD08_RS05585 PF07724 AAA domain (Cdc48 subfamily) RD08_RS05585 PF10431 C-terminal, D2-small domain, of ClpB protein RD08_RS05585 PF17871 AAA lid domain RD08_RS05590 PF04403 Paraquat-inducible protein A RD08_RS05595 PF02470 MlaD protein RD08_RS05605 PF00171 Aldehyde dehydrogenase family RD08_RS05605 PF01619 Proline dehydrogenase RD08_RS05605 PF14850 DNA-binding domain of Proline dehydrogenase RD08_RS05605 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RD08_RS05615 PF13458 Periplasmic binding protein RD08_RS05620 PF02653 Branched-chain amino acid transport system / permease component RD08_RS05625 PF11862 Domain of unknown function (DUF3382) RD08_RS05625 PF02653 Branched-chain amino acid transport system / permease component RD08_RS05630 PF00005 ABC transporter RD08_RS05630 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS05635 PF00005 ABC transporter RD08_RS05640 PF07690 Major Facilitator Superfamily RD08_RS05645 PF00440 Bacterial regulatory proteins, tetR family RD08_RS05655 PF03212 Pertactin RD08_RS05655 PF03797 Autotransporter beta-domain RD08_RS05665 PF00543 Nitrogen regulatory protein P-II RD08_RS05670 PF04380 Membrane fusogenic activity RD08_RS05685 PF07690 Major Facilitator Superfamily RD08_RS05685 PF00083 Sugar (and other) transporter RD08_RS05695 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD08_RS05700 PF00510 Cytochrome c oxidase subunit III RD08_RS05705 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD08_RS05710 PF02104 SURF1 family RD08_RS05735 PF13411 MerR HTH family regulatory protein RD08_RS05740 PF00403 Heavy-metal-associated domain RD08_RS05760 PF06968 Biotin and Thiamin Synthesis associated domain RD08_RS05760 PF04055 Radical SAM superfamily RD08_RS05775 PF08534 Redoxin RD08_RS05785 PF01738 Dienelactone hydrolase family RD08_RS05795 PF01967 MoaC family RD08_RS05805 PF02391 MoaE protein RD08_RS05810 PF00994 Probable molybdopterin binding domain RD08_RS05815 PF03454 MoeA C-terminal region (domain IV) RD08_RS05815 PF00994 Probable molybdopterin binding domain RD08_RS05815 PF03453 MoeA N-terminal region (domain I and II) RD08_RS05820 PF04055 Radical SAM superfamily RD08_RS05820 PF06463 Molybdenum Cofactor Synthesis C RD08_RS05840 PF00206 Lyase RD08_RS05840 PF14698 Argininosuccinate lyase C-terminal RD08_RS05845 PF00924 Mechanosensitive ion channel RD08_RS05850 PF00795 Carbon-nitrogen hydrolase RD08_RS05850 PF02540 NAD synthase RD08_RS05855 PF00543 Nitrogen regulatory protein P-II RD08_RS05880 PF03466 LysR substrate binding domain RD08_RS05880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS05890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS05895 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05900 PF12911 N-terminal TM domain of oligopeptide transport permease C RD08_RS05900 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05905 PF03193 RsgA GTPase RD08_RS05910 PF01435 Peptidase family M48 RD08_RS05915 PF00929 Exonuclease RD08_RS05920 PF03853 YjeF-related protein N-terminus RD08_RS05925 PF07848 PaaX-like protein RD08_RS05925 PF08223 PaaX-like protein C-terminal domain RD08_RS05930 PF05138 Phenylacetic acid catabolic protein RD08_RS05935 PF06243 Phenylacetic acid degradation B RD08_RS05940 PF05138 Phenylacetic acid catabolic protein RD08_RS05945 PF01883 Iron-sulfur cluster assembly protein RD08_RS05950 PF00970 Oxidoreductase FAD-binding domain RD08_RS05950 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS05950 PF00175 Oxidoreductase NAD-binding domain RD08_RS05960 PF00171 Aldehyde dehydrogenase family RD08_RS05965 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS05970 PF03061 Thioesterase superfamily RD08_RS05975 PF00501 AMP-binding enzyme RD08_RS05975 PF14535 AMP-binding enzyme C-terminal domain RD08_RS05980 PF16970 Type-1 fimbrial protein, A RD08_RS05995 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS06000 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD08_RS06000 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD08_RS06005 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD08_RS06010 PF02769 AIR synthase related protein, C-terminal domain RD08_RS06010 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RD08_RS06010 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RD08_RS06015 PF05860 haemagglutination activity domain RD08_RS06015 PF13332 Hemagglutinin repeat RD08_RS06015 PF05594 Haemagluttinin repeat RD08_RS06015 PF13018 Extended Signal Peptide of Type V secretion system RD08_RS06040 PF00596 Class II Aldolase and Adducin N-terminal domain RD08_RS06045 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS06050 PF01242 6-pyruvoyl tetrahydropterin synthase RD08_RS06060 PF00472 RF-1 domain RD08_RS06080 PF00701 Dihydrodipicolinate synthetase family RD08_RS06085 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS06110 PF00890 FAD binding domain RD08_RS06110 PF14537 Cytochrome c3 RD08_RS06115 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS06130 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RD08_RS06130 PF01266 FAD dependent oxidoreductase RD08_RS06135 PF00455 DeoR C terminal sensor domain RD08_RS06135 PF08220 DeoR-like helix-turn-helix domain RD08_RS06140 PF17912 MalK OB fold domain RD08_RS06140 PF00005 ABC transporter RD08_RS06145 PF17912 MalK OB fold domain RD08_RS06145 PF00005 ABC transporter RD08_RS06155 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS06180 PF01037 Lrp/AsnC ligand binding domain RD08_RS06185 PF01266 FAD dependent oxidoreductase RD08_RS06190 PF12320 Type 5 capsule protein repressor C-terminal domain RD08_RS06190 PF00149 Calcineurin-like phosphoesterase RD08_RS06215 PF00196 Bacterial regulatory proteins, luxR family RD08_RS06215 PF00072 Response regulator receiver domain RD08_RS06235 PF00571 CBS domain RD08_RS06235 PF00478 IMP dehydrogenase / GMP reductase domain RD08_RS06240 PF00117 Glutamine amidotransferase class-I RD08_RS06240 PF00958 GMP synthase C terminal domain RD08_RS06240 PF02540 NAD synthase RD08_RS06250 PF07804 HipA-like C-terminal domain RD08_RS06250 PF13657 HipA N-terminal domain RD08_RS06260 PF07690 Major Facilitator Superfamily RD08_RS06275 PF01979 Amidohydrolase family RD08_RS06285 PF00005 ABC transporter RD08_RS06290 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS06315 PF01965 DJ-1/PfpI family RD08_RS06320 PF00916 Sulfate permease family RD08_RS06320 PF01740 STAS domain RD08_RS06325 PF10996 Beta-Casp domain RD08_RS06325 PF00753 Metallo-beta-lactamase superfamily RD08_RS06325 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RD08_RS06340 PF12706 Beta-lactamase superfamily domain RD08_RS06345 PF12833 Helix-turn-helix domain RD08_RS06345 PF01965 DJ-1/PfpI family RD08_RS06350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS06350 PF03466 LysR substrate binding domain RD08_RS06365 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS06365 PF00107 Zinc-binding dehydrogenase RD08_RS06370 PF07690 Major Facilitator Superfamily RD08_RS06375 PF00155 Aminotransferase class I and II RD08_RS06375 PF00392 Bacterial regulatory proteins, gntR family RD08_RS06385 PF01810 LysE type translocator RD08_RS06395 PF07687 Peptidase dimerisation domain RD08_RS06395 PF01546 Peptidase family M20/M25/M40 RD08_RS06400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS06405 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS06410 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS06410 PF12911 N-terminal TM domain of oligopeptide transport permease C RD08_RS06415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS06415 PF00005 ABC transporter RD08_RS06420 PF00356 Bacterial regulatory proteins, lacI family RD08_RS06445 PF09335 SNARE associated Golgi protein RD08_RS06455 PF13847 Methyltransferase domain RD08_RS06470 PF00392 Bacterial regulatory proteins, gntR family RD08_RS06470 PF00155 Aminotransferase class I and II RD08_RS06480 PF00692 dUTPase RD08_RS06490 PF01632 Ribosomal protein L35 RD08_RS06495 PF00453 Ribosomal protein L20 RD08_RS06500 PF01409 tRNA synthetases class II core domain (F) RD08_RS06500 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RD08_RS06505 PF01588 Putative tRNA binding domain RD08_RS06505 PF03147 Ferredoxin-fold anticodon binding domain RD08_RS06505 PF03484 tRNA synthetase B5 domain RD08_RS06505 PF03483 B3/4 domain RD08_RS06505 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RD08_RS06510 PF00216 Bacterial DNA-binding protein RD08_RS06560 PF04231 Endonuclease I RD08_RS06580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD08_RS06580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD08_RS06585 PF04381 Putative exonuclease, RdgC RD08_RS06595 PF02515 CoA-transferase family III RD08_RS06600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS06600 PF03466 LysR substrate binding domain RD08_RS06620 PF00106 short chain dehydrogenase RD08_RS06630 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS06635 PF08402 TOBE domain RD08_RS06635 PF00005 ABC transporter RD08_RS06640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS06640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS06640 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS06645 PF08946 Osmosensory transporter coiled coil RD08_RS06645 PF00083 Sugar (and other) transporter RD08_RS06650 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS06655 PF00486 Transcriptional regulatory protein, C terminal RD08_RS06655 PF00072 Response regulator receiver domain RD08_RS06660 PF00154 recA bacterial DNA recombination protein RD08_RS06665 PF02631 RecX family RD08_RS06670 PF03466 LysR substrate binding domain RD08_RS06670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS06675 PF08267 Cobalamin-independent synthase, N-terminal domain RD08_RS06675 PF01717 Cobalamin-independent synthase, Catalytic domain RD08_RS06685 PF00549 CoA-ligase RD08_RS06685 PF08442 ATP-grasp domain RD08_RS06690 PF02629 CoA binding domain RD08_RS06690 PF00549 CoA-ligase RD08_RS06695 PF03741 Integral membrane protein TerC family RD08_RS06700 PF03741 Integral membrane protein TerC family RD08_RS06705 PF03900 Porphobilinogen deaminase, C-terminal domain RD08_RS06705 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RD08_RS06725 PF00719 Inorganic pyrophosphatase RD08_RS06730 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD08_RS06765 PF00263 Bacterial type II and III secretion system protein RD08_RS06765 PF04972 BON domain RD08_RS06765 PF13629 Pilus formation protein N terminal region RD08_RS06770 PF00437 Type II/IV secretion system protein RD08_RS06790 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS06795 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD08_RS06795 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD08_RS06800 PF02615 Malate/L-lactate dehydrogenase RD08_RS06805 PF03466 LysR substrate binding domain RD08_RS06805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS06820 PF01266 FAD dependent oxidoreductase RD08_RS06825 PF04267 Sarcosine oxidase, delta subunit family RD08_RS06830 PF01571 Aminomethyltransferase folate-binding domain RD08_RS06830 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD08_RS06830 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS06830 PF17806 Sarcosine oxidase A3 domain RD08_RS06840 PF00551 Formyl transferase RD08_RS06845 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS06855 PF00561 alpha/beta hydrolase fold RD08_RS06865 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RD08_RS06865 PF01565 FAD binding domain RD08_RS06870 PF05173 Dihydrodipicolinate reductase, C-terminus RD08_RS06870 PF01113 Dihydrodipicolinate reductase, N-terminus RD08_RS06875 PF04355 SmpA / OmlA family RD08_RS06880 PF01475 Ferric uptake regulator family RD08_RS06885 PF02463 RecF/RecN/SMC N terminal domain RD08_RS06890 PF01513 ATP-NAD kinase RD08_RS06895 PF01628 HrcA protein C terminal domain RD08_RS06895 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RD08_RS06900 PF00762 Ferrochelatase RD08_RS06910 PF01025 GrpE RD08_RS06920 PF00012 Hsp70 protein RD08_RS06925 PF01556 DnaJ C terminal domain RD08_RS06925 PF00684 DnaJ central domain RD08_RS06925 PF00226 DnaJ domain RD08_RS06930 PF05193 Peptidase M16 inactive domain RD08_RS06930 PF00675 Insulinase (Peptidase family M16) RD08_RS06950 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS06950 PF01434 Peptidase family M41 RD08_RS06950 PF17862 AAA+ lid domain RD08_RS06960 PF00034 Cytochrome c RD08_RS06975 PF00180 Isocitrate/isopropylmalate dehydrogenase RD08_RS06995 PF00072 Response regulator receiver domain RD08_RS06995 PF00486 Transcriptional regulatory protein, C terminal RD08_RS07000 PF02702 Osmosensitive K+ channel His kinase sensor domain RD08_RS07000 PF13493 Domain of unknown function (DUF4118) RD08_RS07000 PF13492 GAF domain RD08_RS07000 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS07000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS07005 PF02669 K+-transporting ATPase, c chain RD08_RS07015 PF03814 Potassium-transporting ATPase A subunit RD08_RS07025 PF00474 Sodium:solute symporter family RD08_RS07040 PF00893 Small Multidrug Resistance protein RD08_RS07045 PF01713 Smr domain RD08_RS07045 PF00488 MutS domain V RD08_RS07050 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS07055 PF01580 FtsK/SpoIIIE family RD08_RS07055 PF09397 Ftsk gamma domain RD08_RS07055 PF17854 FtsK alpha domain RD08_RS07055 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RD08_RS07060 PF03548 Outer membrane lipoprotein carrier protein LolA RD08_RS07065 PF12002 MgsA AAA+ ATPase C terminal RD08_RS07065 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS07065 PF16193 AAA C-terminal domain RD08_RS07070 PF02403 Seryl-tRNA synthetase N-terminal domain RD08_RS07070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD08_RS07095 PF00990 Diguanylate cyclase, GGDEF domain RD08_RS07095 PF17151 Periplasmic sensor domain RD08_RS07110 PF07660 Secretin and TonB N terminus short domain RD08_RS07110 PF00593 TonB dependent receptor RD08_RS07110 PF07715 TonB-dependent Receptor Plug Domain RD08_RS07115 PF07690 Major Facilitator Superfamily RD08_RS07135 PF04183 IucA / IucC family RD08_RS07135 PF06276 Ferric iron reductase FhuF-like transporter RD08_RS07145 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RD08_RS07155 PF00999 Sodium/hydrogen exchanger family RD08_RS07155 PF02254 TrkA-N domain RD08_RS07160 PF00106 short chain dehydrogenase RD08_RS07170 PF03883 Peroxide stress protein YaaA RD08_RS07180 PF12805 FUSC-like inner membrane protein yccS RD08_RS07190 PF00990 Diguanylate cyclase, GGDEF domain RD08_RS07200 PF04055 Radical SAM superfamily RD08_RS07200 PF06969 HemN C-terminal domain RD08_RS07210 PF00196 Bacterial regulatory proteins, luxR family RD08_RS07215 PF03129 Anticodon binding domain RD08_RS07215 PF02824 TGS domain RD08_RS07215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD08_RS07215 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD08_RS07220 PF00707 Translation initiation factor IF-3, C-terminal domain RD08_RS07220 PF05198 Translation initiation factor IF-3, N-terminal domain RD08_RS07225 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RD08_RS07225 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RD08_RS07235 PF00381 PTS HPr component phosphorylation site RD08_RS07240 PF05524 PEP-utilising enzyme, N-terminal RD08_RS07240 PF02896 PEP-utilising enzyme, TIM barrel domain RD08_RS07240 PF00391 PEP-utilising enzyme, mobile domain RD08_RS07250 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD08_RS07260 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS07265 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS07270 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS07275 PF00005 ABC transporter RD08_RS07290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS07290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD08_RS07300 PF02293 AmiS/UreI family transporter RD08_RS07305 PF03069 Acetamidase/Formamidase family RD08_RS07320 PF01116 Fructose-bisphosphate aldolase class-II RD08_RS07330 PF01259 SAICAR synthetase RD08_RS07335 PF15723 Motility quorum-sensing regulator, toxin of MqsA RD08_RS07340 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD08_RS07345 PF02600 Disulfide bond formation protein DsbB RD08_RS07350 PF00731 AIR carboxylase RD08_RS07355 PF02222 ATP-grasp domain RD08_RS07355 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RD08_RS07360 PF03481 Putative GTP-binding controlling metal-binding RD08_RS07360 PF01300 Telomere recombination RD08_RS07365 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS07370 PF09339 IclR helix-turn-helix domain RD08_RS07370 PF01614 Bacterial transcriptional regulator RD08_RS07375 PF00491 Arginase family RD08_RS07380 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS07385 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS07390 PF00005 ABC transporter RD08_RS07395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS07395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS07405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS07405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS07405 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS07410 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS07410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS07410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS07415 PF03466 LysR substrate binding domain RD08_RS07415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07420 PF00589 Phage integrase family RD08_RS07420 PF02899 Phage integrase, N-terminal SAM-like domain RD08_RS07425 PF04073 Aminoacyl-tRNA editing domain RD08_RS07430 PF01174 SNO glutamine amidotransferase family RD08_RS07445 PF00768 D-alanyl-D-alanine carboxypeptidase RD08_RS07455 PF07690 Major Facilitator Superfamily RD08_RS07465 PF13361 UvrD-like helicase C-terminal domain RD08_RS07465 PF00580 UvrD/REP helicase N-terminal domain RD08_RS07465 PF12705 PD-(D/E)XK nuclease superfamily RD08_RS07475 PF12170 DNA polymerase III tau subunit V interacting with alpha RD08_RS07475 PF12169 DNA polymerase III subunits gamma and tau domain III RD08_RS07475 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RD08_RS07480 PF02575 YbaB/EbfC DNA-binding family RD08_RS07485 PF13662 Toprim domain RD08_RS07485 PF02132 RecR protein RD08_RS07505 PF04228 Putative neutral zinc metallopeptidase RD08_RS07510 PF01300 Telomere recombination RD08_RS07550 PF03358 NADPH-dependent FMN reductase RD08_RS07555 PF07311 Dodecin RD08_RS07560 PF01624 MutS domain I RD08_RS07560 PF05188 MutS domain II RD08_RS07560 PF05192 MutS domain III RD08_RS07560 PF05190 MutS family domain IV RD08_RS07560 PF00488 MutS domain V RD08_RS07565 PF08007 Cupin superfamily protein RD08_RS07570 PF16970 Type-1 fimbrial protein, A RD08_RS07575 PF06804 NlpB/DapX lipoprotein RD08_RS07580 PF00701 Dihydrodipicolinate synthetase family RD08_RS07585 PF02163 Peptidase family M50 RD08_RS07595 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS07600 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS07605 PF00005 ABC transporter RD08_RS07610 PF13291 ACT domain RD08_RS07610 PF04607 Region found in RelA / SpoT proteins RD08_RS07610 PF02824 TGS domain RD08_RS07615 PF01192 RNA polymerase Rpb6 RD08_RS07620 PF00625 Guanylate kinase RD08_RS07625 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD08_RS07630 PF00034 Cytochrome c RD08_RS07640 PF00877 NlpC/P60 family RD08_RS07645 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RD08_RS07645 PF01048 Phosphorylase superfamily RD08_RS07665 PF03755 YicC-like family, N-terminal region RD08_RS07665 PF08340 Domain of unknown function (DUF1732) RD08_RS07670 PF03725 3' exoribonuclease family, domain 2 RD08_RS07670 PF01138 3' exoribonuclease family, domain 1 RD08_RS07680 PF03466 LysR substrate binding domain RD08_RS07680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07685 PF00990 Diguanylate cyclase, GGDEF domain RD08_RS07685 PF17154 Gammaproteobacterial periplasmic sensor domain RD08_RS07685 PF00563 EAL domain RD08_RS07685 PF00672 HAMP domain RD08_RS07690 PF01725 Ham1 family RD08_RS07700 PF06969 HemN C-terminal domain RD08_RS07700 PF04055 Radical SAM superfamily RD08_RS07705 PF03951 Glutamine synthetase, beta-Grasp domain RD08_RS07705 PF00120 Glutamine synthetase, catalytic domain RD08_RS07710 PF00989 PAS fold RD08_RS07710 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS07710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS07715 PF00158 Sigma-54 interaction domain RD08_RS07715 PF00072 Response regulator receiver domain RD08_RS07715 PF02954 Bacterial regulatory protein, Fis family RD08_RS07720 PF03466 LysR substrate binding domain RD08_RS07720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07725 PF17954 Quercetinase C-terminal cupin domain RD08_RS07725 PF02678 Pirin RD08_RS07730 PF05726 Pirin C-terminal cupin domain RD08_RS07730 PF02678 Pirin RD08_RS07740 PF08402 TOBE domain RD08_RS07740 PF00005 ABC transporter RD08_RS07745 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS07755 PF00970 Oxidoreductase FAD-binding domain RD08_RS07755 PF00175 Oxidoreductase NAD-binding domain RD08_RS07760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07760 PF03466 LysR substrate binding domain RD08_RS07770 PF00248 Aldo/keto reductase family RD08_RS07780 PF01042 Endoribonuclease L-PSP RD08_RS07785 PF00270 DEAD/DEAH box helicase RD08_RS07785 PF17191 RecG wedge domain RD08_RS07785 PF00271 Helicase conserved C-terminal domain RD08_RS07790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07790 PF03466 LysR substrate binding domain RD08_RS07795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07795 PF03466 LysR substrate binding domain RD08_RS07800 PF00171 Aldehyde dehydrogenase family RD08_RS07805 PF00210 Ferritin-like domain RD08_RS07830 PF00005 ABC transporter RD08_RS07840 PF00534 Glycosyl transferases group 1 RD08_RS07850 PF02563 Polysaccharide biosynthesis/export protein RD08_RS07855 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD08_RS07855 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD08_RS07855 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD08_RS07860 PF01370 NAD dependent epimerase/dehydratase family RD08_RS07865 PF05159 Capsule polysaccharide biosynthesis protein RD08_RS07870 PF05159 Capsule polysaccharide biosynthesis protein RD08_RS07880 PF00106 short chain dehydrogenase RD08_RS07895 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS07895 PF14759 Reductase C-terminal RD08_RS07905 PF00005 ABC transporter RD08_RS07910 PF00005 ABC transporter RD08_RS07910 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS07915 PF11862 Domain of unknown function (DUF3382) RD08_RS07915 PF02653 Branched-chain amino acid transport system / permease component RD08_RS07925 PF03741 Integral membrane protein TerC family RD08_RS07935 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS07950 PF07726 ATPase family associated with various cellular activities (AAA) RD08_RS07950 PF17863 AAA lid domain RD08_RS07980 PF00884 Sulfatase RD08_RS08005 PF00072 Response regulator receiver domain RD08_RS08005 PF00196 Bacterial regulatory proteins, luxR family RD08_RS08010 PF03797 Autotransporter beta-domain RD08_RS08010 PF12951 Passenger-associated-transport-repeat RD08_RS08010 PF00082 Subtilase family RD08_RS08015 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD08_RS08020 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RD08_RS08025 PF00043 Glutathione S-transferase, C-terminal domain RD08_RS08025 PF02798 Glutathione S-transferase, N-terminal domain RD08_RS08030 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD08_RS08040 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08050 PF01070 FMN-dependent dehydrogenase RD08_RS08055 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD08_RS08070 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS08075 PF03466 LysR substrate binding domain RD08_RS08080 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08105 PF03358 NADPH-dependent FMN reductase RD08_RS08130 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08140 PF03466 LysR substrate binding domain RD08_RS08140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS08155 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08160 PF13244 Domain of unknown function (DUF4040) RD08_RS08160 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD08_RS08160 PF00361 Proton-conducting membrane transporter RD08_RS08160 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RD08_RS08165 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD08_RS08170 PF00361 Proton-conducting membrane transporter RD08_RS08175 PF01899 Na+/H+ ion antiporter subunit RD08_RS08180 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RD08_RS08205 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD08_RS08210 PF02016 LD-carboxypeptidase N-terminal domain RD08_RS08210 PF17676 LD-carboxypeptidase C-terminal domain RD08_RS08215 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS08220 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD08_RS08230 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS08235 PF12848 ABC transporter RD08_RS08235 PF00005 ABC transporter RD08_RS08240 PF00005 ABC transporter RD08_RS08270 PF00042 Globin RD08_RS08270 PF00175 Oxidoreductase NAD-binding domain RD08_RS08270 PF00970 Oxidoreductase FAD-binding domain RD08_RS08275 PF02082 Transcriptional regulator RD08_RS08280 PF01266 FAD dependent oxidoreductase RD08_RS08295 PF01571 Aminomethyltransferase folate-binding domain RD08_RS08300 PF02618 YceG-like family RD08_RS08305 PF02223 Thymidylate kinase RD08_RS08310 PF12169 DNA polymerase III subunits gamma and tau domain III RD08_RS08315 PF01026 TatD related DNase RD08_RS08330 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS08340 PF00005 ABC transporter RD08_RS08345 PF00491 Arginase family RD08_RS08350 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD08_RS08350 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD08_RS08355 PF00171 Aldehyde dehydrogenase family RD08_RS08360 PF01546 Peptidase family M20/M25/M40 RD08_RS08360 PF07687 Peptidase dimerisation domain RD08_RS08365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS08365 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS08365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS08375 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD08_RS08375 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD08_RS08385 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD08_RS08385 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS08390 PF00392 Bacterial regulatory proteins, gntR family RD08_RS08390 PF07729 FCD domain RD08_RS08400 PF04343 Protein of unknown function, DUF488 RD08_RS08420 PF01425 Amidase RD08_RS08425 PF07286 Protein of unknown function (DUF1445) RD08_RS08435 PF01627 Hpt domain RD08_RS08435 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS08435 PF00072 Response regulator receiver domain RD08_RS08435 PF00989 PAS fold RD08_RS08435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS08435 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS08440 PF00196 Bacterial regulatory proteins, luxR family RD08_RS08440 PF00072 Response regulator receiver domain RD08_RS08445 PF05594 Haemagluttinin repeat RD08_RS08445 PF13332 Hemagglutinin repeat RD08_RS08445 PF13018 Extended Signal Peptide of Type V secretion system RD08_RS08445 PF05860 haemagglutination activity domain RD08_RS08450 PF16970 Type-1 fimbrial protein, A RD08_RS08455 PF02753 Pili assembly chaperone PapD, C-terminal domain RD08_RS08455 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RD08_RS08460 PF13954 PapC N-terminal domain RD08_RS08460 PF00577 Outer membrane usher protein RD08_RS08460 PF13953 PapC C-terminal domain RD08_RS08465 PF00419 Fimbrial protein RD08_RS08470 PF17287 POTRA domain RD08_RS08470 PF08479 POTRA domain, ShlB-type RD08_RS08470 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD08_RS08485 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS08510 PF03466 LysR substrate binding domain RD08_RS08510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS08520 PF05378 Hydantoinase/oxoprolinase N-terminal region RD08_RS08520 PF01968 Hydantoinase/oxoprolinase RD08_RS08535 PF00924 Mechanosensitive ion channel RD08_RS08535 PF05552 Conserved TM helix RD08_RS08545 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08550 PF00588 SpoU rRNA Methylase family RD08_RS08555 PF00459 Inositol monophosphatase family RD08_RS08560 PF03741 Integral membrane protein TerC family RD08_RS08560 PF03471 Transporter associated domain RD08_RS08565 PF02673 Bacitracin resistance protein BacA RD08_RS08570 PF00149 Calcineurin-like phosphoesterase RD08_RS08575 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RD08_RS08585 PF01406 tRNA synthetases class I (C) catalytic domain RD08_RS08585 PF09190 DALR domain RD08_RS08590 PF12833 Helix-turn-helix domain RD08_RS08590 PF00730 HhH-GPD superfamily base excision DNA repair protein RD08_RS08590 PF02805 Metal binding domain of Ada RD08_RS08590 PF06029 AlkA N-terminal domain RD08_RS08595 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RD08_RS08605 PF01171 PP-loop family RD08_RS08605 PF09179 TilS substrate binding domain RD08_RS08610 PF00696 Amino acid kinase family RD08_RS08610 PF01842 ACT domain RD08_RS08610 PF13840 ACT domain RD08_RS08635 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS08635 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS08640 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD08_RS08640 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD08_RS08645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD08_RS08650 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS08655 PF00561 alpha/beta hydrolase fold RD08_RS08660 PF01958 Domain of unknown function DUF108 RD08_RS08660 PF03447 Homoserine dehydrogenase, NAD binding domain RD08_RS08675 PF03466 LysR substrate binding domain RD08_RS08675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS08695 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS08700 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS08705 PF08402 TOBE domain RD08_RS08705 PF00005 ABC transporter RD08_RS08715 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS08715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD08_RS08720 PF01614 Bacterial transcriptional regulator RD08_RS08720 PF09339 IclR helix-turn-helix domain RD08_RS08725 PF13380 CoA binding domain RD08_RS08730 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08735 PF01042 Endoribonuclease L-PSP RD08_RS08760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD08_RS08770 PF00535 Glycosyl transferase family 2 RD08_RS08775 PF01522 Polysaccharide deacetylase RD08_RS08775 PF14883 Hypothetical glycosyl hydrolase family 13 RD08_RS08795 PF12802 MarR family RD08_RS08810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD08_RS08810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD08_RS08810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD08_RS08810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD08_RS08815 PF00342 Phosphoglucose isomerase RD08_RS08820 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS08830 PF02146 Sir2 family RD08_RS08835 PF00459 Inositol monophosphatase family RD08_RS08840 PF00171 Aldehyde dehydrogenase family RD08_RS08845 PF00202 Aminotransferase class-III RD08_RS08850 PF00392 Bacterial regulatory proteins, gntR family RD08_RS08850 PF00155 Aminotransferase class I and II RD08_RS08860 PF13361 UvrD-like helicase C-terminal domain RD08_RS08860 PF00580 UvrD/REP helicase N-terminal domain RD08_RS08865 PF01544 CorA-like Mg2+ transporter protein RD08_RS08875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS08880 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS08885 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS08885 PF12911 N-terminal TM domain of oligopeptide transport permease C RD08_RS08890 PF00005 ABC transporter RD08_RS08890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS08895 PF01047 MarR family RD08_RS08910 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD08_RS08910 PF08479 POTRA domain, ShlB-type RD08_RS08915 PF00563 EAL domain RD08_RS08915 PF03707 Bacterial signalling protein N terminal repeat RD08_RS08915 PF00990 Diguanylate cyclase, GGDEF domain RD08_RS08945 PF13629 Pilus formation protein N terminal region RD08_RS08945 PF00263 Bacterial type II and III secretion system protein RD08_RS08945 PF04972 BON domain RD08_RS08955 PF00437 Type II/IV secretion system protein RD08_RS08985 PF00158 Sigma-54 interaction domain RD08_RS08985 PF00072 Response regulator receiver domain RD08_RS08985 PF02954 Bacterial regulatory protein, Fis family RD08_RS09000 PF08281 Sigma-70, region 4 RD08_RS09000 PF04542 Sigma-70 region 2 RD08_RS09010 PF00034 Cytochrome c RD08_RS09015 PF01132 Elongation factor P (EF-P) OB domain RD08_RS09015 PF08207 Elongation factor P (EF-P) KOW-like domain RD08_RS09015 PF09285 Elongation factor P, C-terminal RD08_RS09030 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RD08_RS09035 PF00330 Aconitase family (aconitate hydratase) RD08_RS09035 PF00694 Aconitase C-terminal domain RD08_RS09045 PF00593 TonB dependent receptor RD08_RS09045 PF07715 TonB-dependent Receptor Plug Domain RD08_RS09060 PF00691 OmpA family RD08_RS09070 PF11791 Aconitate B N-terminal domain RD08_RS09070 PF00330 Aconitase family (aconitate hydratase) RD08_RS09070 PF06434 Aconitate hydratase 2 N-terminus RD08_RS09095 PF00892 EamA-like transporter family RD08_RS09100 PF01925 Sulfite exporter TauE/SafE RD08_RS09115 PF03466 LysR substrate binding domain RD08_RS09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS09120 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RD08_RS09120 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RD08_RS09130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS09130 PF03466 LysR substrate binding domain RD08_RS09165 PF03797 Autotransporter beta-domain RD08_RS09165 PF03212 Pertactin RD08_RS09170 PF02545 Maf-like protein RD08_RS09175 PF02590 Predicted SPOUT methyltransferase RD08_RS09185 PF01467 Cytidylyltransferase-like RD08_RS09190 PF01218 Coproporphyrinogen III oxidase RD08_RS09195 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RD08_RS09195 PF02844 Phosphoribosylglycinamide synthetase, N domain RD08_RS09195 PF02843 Phosphoribosylglycinamide synthetase, C domain RD08_RS09200 PF01709 Transcriptional regulator RD08_RS09205 PF05872 Bacterial protein of unknown function (DUF853) RD08_RS09210 PF01235 Sodium:alanine symporter family RD08_RS09215 PF00202 Aminotransferase class-III RD08_RS09220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS09225 PF00171 Aldehyde dehydrogenase family RD08_RS09235 PF07687 Peptidase dimerisation domain RD08_RS09235 PF01546 Peptidase family M20/M25/M40 RD08_RS09240 PF00850 Histone deacetylase domain RD08_RS09245 PF07883 Cupin domain RD08_RS09250 PF00202 Aminotransferase class-III RD08_RS09260 PF00005 ABC transporter RD08_RS09260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS09265 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS09265 PF12911 N-terminal TM domain of oligopeptide transport permease C RD08_RS09270 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS09275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS09280 PF00392 Bacterial regulatory proteins, gntR family RD08_RS09280 PF00155 Aminotransferase class I and II RD08_RS09285 PF00180 Isocitrate/isopropylmalate dehydrogenase RD08_RS09290 PF07690 Major Facilitator Superfamily RD08_RS09295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD08_RS09295 PF00529 HlyD membrane-fusion protein of T1SS RD08_RS09305 PF01047 MarR family RD08_RS09315 PF00892 EamA-like transporter family RD08_RS09320 PF00107 Zinc-binding dehydrogenase RD08_RS09320 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS09325 PF01435 Peptidase family M48 RD08_RS09335 PF00581 Rhodanese-like domain RD08_RS09345 PF03466 LysR substrate binding domain RD08_RS09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS09350 PF08402 TOBE domain RD08_RS09350 PF00005 ABC transporter RD08_RS09355 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS09360 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS09370 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS09390 PF00860 Permease family RD08_RS09395 PF02203 Tar ligand binding domain homologue RD08_RS09395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD08_RS09395 PF00672 HAMP domain RD08_RS09400 PF01272 Transcription elongation factor, GreA/GreB, C-term RD08_RS09400 PF03449 Transcription elongation factor, N-terminal RD08_RS09430 PF00771 FHIPEP family RD08_RS09495 PF01514 Secretory protein of YscJ/FliF family RD08_RS09505 PF02108 Flagellar assembly protein FliH RD08_RS09510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD08_RS09510 PF18269 T3SS EscN ATPase C-terminal domain RD08_RS09510 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD08_RS09525 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD08_RS09530 PF00813 FliP family RD08_RS09535 PF01313 Bacterial export proteins, family 3 RD08_RS09540 PF01311 Bacterial export proteins, family 1 RD08_RS09545 PF01312 FlhB HrpN YscU SpaS Family RD08_RS09555 PF03958 Bacterial type II/III secretion system short domain RD08_RS09555 PF00263 Bacterial type II and III secretion system protein RD08_RS09560 PF04542 Sigma-70 region 2 RD08_RS09560 PF08281 Sigma-70, region 4 RD08_RS09585 PF00672 HAMP domain RD08_RS09585 PF07228 Stage II sporulation protein E (SpoIIE) RD08_RS09595 PF01168 Alanine racemase, N-terminal domain RD08_RS09595 PF00842 Alanine racemase, C-terminal domain RD08_RS09600 PF13581 Histidine kinase-like ATPase domain RD08_RS09605 PF01740 STAS domain RD08_RS09610 PF13396 Phospholipase_D-nuclease N-terminal RD08_RS09610 PF13091 PLD-like domain RD08_RS09620 PF03797 Autotransporter beta-domain RD08_RS09640 PF16868 NMT1-like family RD08_RS09645 PF00202 Aminotransferase class-III RD08_RS09655 PF12802 MarR family RD08_RS09660 PF00583 Acetyltransferase (GNAT) family RD08_RS09670 PF01205 Uncharacterized protein family UPF0029 RD08_RS09675 PF00085 Thioredoxin RD08_RS09685 PF00860 Permease family RD08_RS09690 PF00814 Glycoprotease family RD08_RS09700 PF02660 Glycerol-3-phosphate acyltransferase RD08_RS09705 PF01975 Survival protein SurE RD08_RS09715 PF01476 LysM domain RD08_RS09715 PF01551 Peptidase family M23 RD08_RS09735 PF05958 tRNA (Uracil-5-)-methyltransferase RD08_RS09740 PF00376 MerR family regulatory protein RD08_RS09740 PF09278 MerR, DNA binding RD08_RS09750 PF00462 Glutaredoxin RD08_RS09750 PF08534 Redoxin RD08_RS09755 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS09755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS09760 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RD08_RS09765 PF03009 Glycerophosphoryl diester phosphodiesterase family RD08_RS09770 PF13145 PPIC-type PPIASE domain RD08_RS09775 PF13472 GDSL-like Lipase/Acylhydrolase family RD08_RS09780 PF00005 ABC transporter RD08_RS09800 PF04972 BON domain RD08_RS09810 PF05532 CsbD-like RD08_RS09815 PF08245 Mur ligase middle domain RD08_RS09815 PF02875 Mur ligase family, glutamate ligase domain RD08_RS09815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS09820 PF08443 RimK-like ATP-grasp domain RD08_RS09820 PF02875 Mur ligase family, glutamate ligase domain RD08_RS09820 PF08245 Mur ligase middle domain RD08_RS09840 PF04305 Protein of unknown function (DUF455) RD08_RS09845 PF13406 Transglycosylase SLT domain RD08_RS09860 PF01037 Lrp/AsnC ligand binding domain RD08_RS09870 PF04127 DNA / pantothenate metabolism flavoprotein RD08_RS09870 PF02441 Flavoprotein RD08_RS09875 PF01252 Signal peptidase (SPase) II RD08_RS09880 PF08264 Anticodon-binding domain of tRNA RD08_RS09880 PF00133 tRNA synthetases class I (I, L, M and V) RD08_RS09880 PF06827 Zinc finger found in FPG and IleRS RD08_RS09885 PF06574 FAD synthetase RD08_RS09885 PF01687 Riboflavin kinase RD08_RS09890 PF01189 16S rRNA methyltransferase RsmB/F RD08_RS09890 PF01029 NusB family RD08_RS09910 PF00580 UvrD/REP helicase N-terminal domain RD08_RS09910 PF13361 UvrD-like helicase C-terminal domain RD08_RS09915 PF07715 TonB-dependent Receptor Plug Domain RD08_RS09920 PF12848 ABC transporter RD08_RS09920 PF00005 ABC transporter RD08_RS09925 PF05175 Methyltransferase small domain RD08_RS09930 PF07687 Peptidase dimerisation domain RD08_RS09930 PF01546 Peptidase family M20/M25/M40 RD08_RS09935 PF14602 Hexapeptide repeat of succinyl-transferase RD08_RS09935 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RD08_RS09935 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS09970 PF00313 'Cold-shock' DNA-binding domain RD08_RS09980 PF00313 'Cold-shock' DNA-binding domain RD08_RS09985 PF03350 Uncharacterized protein family, UPF0114 RD08_RS09990 PF05698 Bacterial trigger factor protein (TF) C-terminus RD08_RS09990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD08_RS09990 PF05697 Bacterial trigger factor protein (TF) RD08_RS09995 PF00574 Clp protease RD08_RS10000 PF07724 AAA domain (Cdc48 subfamily) RD08_RS10000 PF10431 C-terminal, D2-small domain, of ClpB protein RD08_RS10000 PF06689 ClpX C4-type zinc finger RD08_RS10005 PF05362 Lon protease (S16) C-terminal proteolytic domain RD08_RS10005 PF02190 ATP-dependent protease La (LON) substrate-binding domain RD08_RS10005 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS10010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS10010 PF03466 LysR substrate binding domain RD08_RS10015 PF02515 CoA-transferase family III RD08_RS10020 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS10025 PF01575 MaoC like domain RD08_RS10030 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS10040 PF00108 Thiolase, N-terminal domain RD08_RS10040 PF02803 Thiolase, C-terminal domain RD08_RS10050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS10050 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS10050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS10060 PF01144 Coenzyme A transferase RD08_RS10065 PF01144 Coenzyme A transferase RD08_RS10070 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS10090 PF03212 Pertactin RD08_RS10090 PF03797 Autotransporter beta-domain RD08_RS10095 PF00717 Peptidase S24-like RD08_RS10095 PF01726 LexA DNA binding domain RD08_RS10100 PF00155 Aminotransferase class I and II RD08_RS10105 PF04851 Type III restriction enzyme, res subunit RD08_RS10105 PF17757 UvrB interaction domain RD08_RS10105 PF12344 Ultra-violet resistance protein B RD08_RS10105 PF02151 UvrB/uvrC motif RD08_RS10105 PF00271 Helicase conserved C-terminal domain RD08_RS10110 PF01451 Low molecular weight phosphotyrosine protein phosphatase RD08_RS10115 PF02082 Transcriptional regulator RD08_RS10120 PF00266 Aminotransferase class-V RD08_RS10125 PF01592 NifU-like N terminal domain RD08_RS10130 PF01521 Iron-sulphur cluster biosynthesis RD08_RS10135 PF07743 HSCB C-terminal oligomerisation domain RD08_RS10140 PF00012 Hsp70 protein RD08_RS10145 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS10150 PF04384 Iron-sulphur cluster assembly RD08_RS10155 PF02142 MGS-like domain RD08_RS10165 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS10175 PF03812 2-keto-3-deoxygluconate permease RD08_RS10180 PF07005 Sugar-binding N-terminal domain RD08_RS10180 PF17042 Nucleotide-binding C-terminal domain RD08_RS10185 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD08_RS10200 PF02261 Aspartate decarboxylase RD08_RS10205 PF00175 Oxidoreductase NAD-binding domain RD08_RS10205 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS10205 PF00970 Oxidoreductase FAD-binding domain RD08_RS10210 PF01266 FAD dependent oxidoreductase RD08_RS10215 PF13416 Bacterial extracellular solute-binding protein RD08_RS10220 PF03466 LysR substrate binding domain RD08_RS10220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS10235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS10240 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS10245 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS10250 PF00005 ABC transporter RD08_RS10250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS10255 PF01425 Amidase RD08_RS10300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD08_RS10300 PF01411 tRNA synthetases class II (A) RD08_RS10300 PF02272 DHHA1 domain RD08_RS10305 PF01206 Sulfurtransferase TusA RD08_RS10315 PF00886 Ribosomal protein S16 RD08_RS10320 PF01782 RimM N-terminal domain RD08_RS10325 PF01746 tRNA (Guanine-1)-methyltransferase RD08_RS10330 PF00266 Aminotransferase class-V RD08_RS10345 PF08521 Two-component sensor kinase N-terminal RD08_RS10345 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS10345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS10350 PF00072 Response regulator receiver domain RD08_RS10350 PF00486 Transcriptional regulatory protein, C terminal RD08_RS10360 PF08264 Anticodon-binding domain of tRNA RD08_RS10360 PF00133 tRNA synthetases class I (I, L, M and V) RD08_RS10360 PF10458 Valyl tRNA synthetase tRNA binding arm RD08_RS10365 PF00334 Nucleoside diphosphate kinase RD08_RS10370 PF04055 Radical SAM superfamily RD08_RS10380 PF04551 GcpE protein RD08_RS10385 PF13393 Histidyl-tRNA synthetase RD08_RS10385 PF03129 Anticodon binding domain RD08_RS10390 PF09976 Tetratricopeptide repeat-like domain RD08_RS10395 PF13360 PQQ-like domain RD08_RS10400 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RD08_RS10400 PF01926 50S ribosome-binding GTPase RD08_RS10405 PF00155 Aminotransferase class I and II RD08_RS10410 PF17209 Hfq protein RD08_RS10415 PF13167 GTP-binding GTPase N-terminal RD08_RS10415 PF16360 GTP-binding GTPase Middle Region RD08_RS10415 PF01926 50S ribosome-binding GTPase RD08_RS10420 PF12221 Bacterial membrane protein N terminal RD08_RS10420 PF01145 SPFH domain / Band 7 family RD08_RS10425 PF01145 SPFH domain / Band 7 family RD08_RS10430 PF13393 Histidyl-tRNA synthetase RD08_RS10435 PF00709 Adenylosuccinate synthetase RD08_RS10440 PF00156 Phosphoribosyl transferase domain RD08_RS10445 PF01165 Ribosomal protein S21 RD08_RS10450 PF10410 DnaB-helicase binding domain of primase RD08_RS10450 PF01807 CHC2 zinc finger RD08_RS10450 PF08275 DNA primase catalytic core, N-terminal domain RD08_RS10450 PF08278 DNA primase DnaG DnaB-binding RD08_RS10455 PF00140 Sigma-70 factor, region 1.2 RD08_RS10455 PF03979 Sigma-70 factor, region 1.1 RD08_RS10455 PF04542 Sigma-70 region 2 RD08_RS10455 PF04539 Sigma-70 region 3 RD08_RS10455 PF04545 Sigma-70, region 4 RD08_RS10455 PF04546 Sigma-70, non-essential region RD08_RS10485 PF01594 AI-2E family transporter RD08_RS10490 PF01061 ABC-2 type transporter RD08_RS10495 PF00005 ABC transporter RD08_RS10520 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RD08_RS10520 PF13746 4Fe-4S dicluster domain RD08_RS10520 PF12801 4Fe-4S binding domain RD08_RS10525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD08_RS10525 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RD08_RS10560 PF00202 Aminotransferase class-III RD08_RS10565 PF00155 Aminotransferase class I and II RD08_RS10575 PF13649 Methyltransferase domain RD08_RS10580 PF03788 LrgA family RD08_RS10585 PF04172 LrgB-like family RD08_RS10600 PF00158 Sigma-54 interaction domain RD08_RS10600 PF02954 Bacterial regulatory protein, Fis family RD08_RS10600 PF01590 GAF domain RD08_RS10605 PF00171 Aldehyde dehydrogenase family RD08_RS10620 PF04286 Protein of unknown function (DUF445) RD08_RS10625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS10625 PF03466 LysR substrate binding domain RD08_RS10630 PF02567 Phenazine biosynthesis-like protein RD08_RS10635 PF07237 Protein of unknown function (DUF1428) RD08_RS10640 PF12833 Helix-turn-helix domain RD08_RS10640 PF02805 Metal binding domain of Ada RD08_RS10650 PF03625 Domain of unknown function DUF302 RD08_RS10650 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD08_RS10670 PF00916 Sulfate permease family RD08_RS10670 PF01740 STAS domain RD08_RS10685 PF02535 ZIP Zinc transporter RD08_RS10695 PF00005 ABC transporter RD08_RS10695 PF00664 ABC transporter transmembrane region RD08_RS10705 PF00583 Acetyltransferase (GNAT) family RD08_RS10720 PF07690 Major Facilitator Superfamily RD08_RS10740 PF06719 AraC-type transcriptional regulator N-terminus RD08_RS10740 PF12833 Helix-turn-helix domain RD08_RS10750 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD08_RS10755 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS10755 PF01799 [2Fe-2S] binding domain RD08_RS10765 PF03466 LysR substrate binding domain RD08_RS10765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS10790 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS10790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS10815 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS10820 PF01522 Polysaccharide deacetylase RD08_RS10830 PF01425 Amidase RD08_RS10835 PF01425 Amidase RD08_RS10870 PF01152 Bacterial-like globin RD08_RS10890 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS10895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS10895 PF03466 LysR substrate binding domain RD08_RS10900 PF12228 Protein of unknown function (DUF3604) RD08_RS10910 PF00108 Thiolase, N-terminal domain RD08_RS10910 PF02803 Thiolase, C-terminal domain RD08_RS10915 PF00501 AMP-binding enzyme RD08_RS10915 PF14535 AMP-binding enzyme C-terminal domain RD08_RS10920 PF07859 alpha/beta hydrolase fold RD08_RS10925 PF02515 CoA-transferase family III RD08_RS10930 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS10940 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS10945 PF00866 Ring hydroxylating beta subunit RD08_RS10950 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD08_RS10950 PF00355 Rieske [2Fe-2S] domain RD08_RS10955 PF13458 Periplasmic binding protein RD08_RS10960 PF02653 Branched-chain amino acid transport system / permease component RD08_RS10965 PF02653 Branched-chain amino acid transport system / permease component RD08_RS10965 PF11862 Domain of unknown function (DUF3382) RD08_RS10980 PF00463 Isocitrate lyase family RD08_RS10985 PF14489 QueF-like protein RD08_RS10985 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RD08_RS11000 PF01066 CDP-alcohol phosphatidyltransferase RD08_RS11005 PF08459 UvrC Helix-hairpin-helix N-terminal RD08_RS11005 PF02151 UvrB/uvrC motif RD08_RS11005 PF01541 GIY-YIG catalytic domain RD08_RS11010 PF00933 Glycosyl hydrolase family 3 N terminal domain RD08_RS11015 PF01648 4'-phosphopantetheinyl transferase superfamily RD08_RS11020 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RD08_RS11025 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RD08_RS11025 PF02321 Outer membrane efflux protein RD08_RS11030 PF00873 AcrB/AcrD/AcrF family RD08_RS11035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD08_RS11035 PF00529 HlyD membrane-fusion protein of T1SS RD08_RS11055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS11055 PF03459 TOBE domain RD08_RS11060 PF00005 ABC transporter RD08_RS11075 PF00080 Copper/zinc superoxide dismutase (SODC) RD08_RS11080 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS11090 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS11100 PF00392 Bacterial regulatory proteins, gntR family RD08_RS11100 PF07729 FCD domain RD08_RS11110 PF02803 Thiolase, C-terminal domain RD08_RS11110 PF00108 Thiolase, N-terminal domain RD08_RS11115 PF01361 Tautomerase enzyme RD08_RS11120 PF00005 ABC transporter RD08_RS11120 PF00571 CBS domain RD08_RS11125 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS11145 PF07690 Major Facilitator Superfamily RD08_RS11150 PF00830 Ribosomal L28 family RD08_RS11155 PF00471 Ribosomal protein L33 RD08_RS11160 PF01740 STAS domain RD08_RS11160 PF00916 Sulfate permease family RD08_RS11180 PF01047 MarR family RD08_RS11185 PF07690 Major Facilitator Superfamily RD08_RS11190 PF00133 tRNA synthetases class I (I, L, M and V) RD08_RS11190 PF13603 Leucyl-tRNA synthetase, Domain 2 RD08_RS11190 PF09334 tRNA synthetases class I (M) RD08_RS11190 PF08264 Anticodon-binding domain of tRNA RD08_RS11205 PF00171 Aldehyde dehydrogenase family RD08_RS11215 PF01425 Amidase RD08_RS11220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS11220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS11270 PF10150 Ribonuclease E/G family RD08_RS11270 PF00575 S1 RNA binding domain RD08_RS11275 PF01842 ACT domain RD08_RS11275 PF00800 Prephenate dehydratase RD08_RS11285 PF07690 Major Facilitator Superfamily RD08_RS11290 PF00664 ABC transporter transmembrane region RD08_RS11290 PF00005 ABC transporter RD08_RS11295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD08_RS11305 PF03692 Putative zinc- or iron-chelating domain RD08_RS11320 PF00884 Sulfatase RD08_RS11325 PF13439 Glycosyltransferase Family 4 RD08_RS11325 PF00534 Glycosyl transferases group 1 RD08_RS11330 PF00535 Glycosyl transferase family 2 RD08_RS11335 PF01522 Polysaccharide deacetylase RD08_RS11340 PF13439 Glycosyltransferase Family 4 RD08_RS11340 PF00534 Glycosyl transferases group 1 RD08_RS11345 PF14579 Helix-hairpin-helix motif RD08_RS11345 PF02811 PHP domain RD08_RS11345 PF07733 Bacterial DNA polymerase III alpha NTPase domain RD08_RS11345 PF01336 OB-fold nucleic acid binding domain RD08_RS11345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RD08_RS11355 PF04408 Helicase associated domain (HA2) RD08_RS11355 PF00270 DEAD/DEAH box helicase RD08_RS11355 PF11898 Domain of unknown function (DUF3418) RD08_RS11355 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RD08_RS11355 PF00271 Helicase conserved C-terminal domain RD08_RS11360 PF00696 Amino acid kinase family RD08_RS11360 PF00583 Acetyltransferase (GNAT) family RD08_RS11365 PF04362 Bacterial Fe(2+) trafficking RD08_RS11370 PF04185 Phosphoesterase family RD08_RS11370 PF05506 Domain of unknown function (DUF756) RD08_RS11375 PF01895 PhoU domain RD08_RS11380 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RD08_RS11385 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS11385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS11385 PF18158 Adaptive response protein AidB N-terminal domain RD08_RS11390 PF02646 RmuC family RD08_RS11400 PF02245 Methylpurine-DNA glycosylase (MPG) RD08_RS11410 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS11415 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS11420 PF08402 TOBE domain RD08_RS11420 PF00005 ABC transporter RD08_RS11425 PF13416 Bacterial extracellular solute-binding protein RD08_RS11445 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS11455 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD08_RS11455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD08_RS11475 PF00285 Citrate synthase, C-terminal domain RD08_RS11480 PF03937 Flavinator of succinate dehydrogenase RD08_RS11485 PF13085 2Fe-2S iron-sulfur cluster binding domain RD08_RS11490 PF02910 Fumarate reductase flavoprotein C-term RD08_RS11490 PF00890 FAD binding domain RD08_RS11495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD08_RS11500 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD08_RS11505 PF00392 Bacterial regulatory proteins, gntR family RD08_RS11505 PF07702 UTRA domain RD08_RS11510 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RD08_RS11510 PF00056 lactate/malate dehydrogenase, NAD binding domain RD08_RS11520 PF00285 Citrate synthase, C-terminal domain RD08_RS11525 PF00330 Aconitase family (aconitate hydratase) RD08_RS11525 PF00694 Aconitase C-terminal domain RD08_RS11530 PF04303 PrpF protein RD08_RS11535 PF03972 MmgE/PrpD family RD08_RS11540 PF03653 Uncharacterised protein family (UPF0093) RD08_RS11545 PF01170 Putative RNA methylase family UPF0020 RD08_RS11545 PF02926 THUMP domain RD08_RS11565 PF16177 Acetyl-coenzyme A synthetase N-terminus RD08_RS11565 PF00501 AMP-binding enzyme RD08_RS11565 PF13193 AMP-binding enzyme C-terminal domain RD08_RS11575 PF01430 Hsp33 protein RD08_RS11600 PF00211 Adenylate and Guanylate cyclase catalytic domain RD08_RS11605 PF04977 Septum formation initiator RD08_RS11610 PF03952 Enolase, N-terminal domain RD08_RS11610 PF00113 Enolase, C-terminal TIM barrel domain RD08_RS11620 PF00793 DAHP synthetase I family RD08_RS11625 PF00117 Glutamine amidotransferase class-I RD08_RS11625 PF06418 CTP synthase N-terminus RD08_RS11635 PF01321 Creatinase/Prolidase N-terminal domain RD08_RS11635 PF00557 Metallopeptidase family M24 RD08_RS11645 PF03576 Peptidase family S58 RD08_RS11650 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS11650 PF12911 N-terminal TM domain of oligopeptide transport permease C RD08_RS11655 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS11660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS11665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS11665 PF00005 ABC transporter RD08_RS11670 PF01112 Asparaginase RD08_RS11680 PF01144 Coenzyme A transferase RD08_RS11700 PF16363 GDP-mannose 4,6 dehydratase RD08_RS11715 PF01212 Beta-eliminating lyase RD08_RS11720 PF00892 EamA-like transporter family RD08_RS11725 PF00501 AMP-binding enzyme RD08_RS11725 PF16177 Acetyl-coenzyme A synthetase N-terminus RD08_RS11725 PF13193 AMP-binding enzyme C-terminal domain RD08_RS11735 PF03928 Haem-degrading RD08_RS11740 PF13193 AMP-binding enzyme C-terminal domain RD08_RS11740 PF16177 Acetyl-coenzyme A synthetase N-terminus RD08_RS11740 PF00501 AMP-binding enzyme RD08_RS11745 PF00877 NlpC/P60 family RD08_RS11760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS11760 PF03466 LysR substrate binding domain RD08_RS11765 PF00171 Aldehyde dehydrogenase family RD08_RS11775 PF03466 LysR substrate binding domain RD08_RS11775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS11785 PF00883 Cytosol aminopeptidase family, catalytic domain RD08_RS11785 PF02789 Cytosol aminopeptidase family, N-terminal domain RD08_RS11790 PF04364 DNA polymerase III chi subunit, HolC RD08_RS11800 PF01027 Inhibitor of apoptosis-promoting Bax1 RD08_RS11805 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS11820 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS11830 PF02565 Recombination protein O C terminal RD08_RS11830 PF11967 Recombination protein O N terminal RD08_RS11835 PF01926 50S ribosome-binding GTPase RD08_RS11835 PF07650 KH domain RD08_RS11840 PF00035 Double-stranded RNA binding motif RD08_RS11840 PF14622 Ribonuclease-III-like RD08_RS11845 PF10502 Signal peptidase, peptidase S26 RD08_RS11850 PF06421 GTP-binding protein LepA C-terminus RD08_RS11850 PF03144 Elongation factor Tu domain 2 RD08_RS11850 PF00009 Elongation factor Tu GTP binding domain RD08_RS11850 PF00679 Elongation factor G C-terminus RD08_RS11855 PF13180 PDZ domain RD08_RS11870 PF04542 Sigma-70 region 2 RD08_RS11870 PF08281 Sigma-70, region 4 RD08_RS11880 PF00109 Beta-ketoacyl synthase, N-terminal domain RD08_RS11880 PF02801 Beta-ketoacyl synthase, C-terminal domain RD08_RS11885 PF00550 Phosphopantetheine attachment site RD08_RS11895 PF00698 Acyl transferase domain RD08_RS11900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD08_RS11900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD08_RS11905 PF02504 Fatty acid synthesis protein RD08_RS11910 PF01783 Ribosomal L32p protein family RD08_RS11915 PF02620 Large ribosomal RNA subunit accumulation protein YceD RD08_RS11920 PF02545 Maf-like protein RD08_RS11930 PF01510 N-acetylmuramoyl-L-alanine amidase RD08_RS11935 PF12805 FUSC-like inner membrane protein yccS RD08_RS11945 PF03883 Peroxide stress protein YaaA RD08_RS11960 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RD08_RS11965 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD08_RS11975 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS11980 PF01416 tRNA pseudouridine synthase RD08_RS11990 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD08_RS11990 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD08_RS11995 PF00180 Isocitrate/isopropylmalate dehydrogenase RD08_RS12000 PF00694 Aconitase C-terminal domain RD08_RS12005 PF00330 Aconitase family (aconitate hydratase) RD08_RS12010 PF12849 PBP superfamily domain RD08_RS12015 PF00005 ABC transporter RD08_RS12020 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS12045 PF13247 4Fe-4S dicluster domain RD08_RS12050 PF00384 Molybdopterin oxidoreductase RD08_RS12050 PF01568 Molydopterin dinucleotide binding domain RD08_RS12050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RD08_RS12080 PF10609 NUBPL iron-transfer P-loop NTPase RD08_RS12085 PF12804 MobA-like NTP transferase domain RD08_RS12090 PF00994 Probable molybdopterin binding domain RD08_RS12090 PF03454 MoeA C-terminal region (domain IV) RD08_RS12090 PF03453 MoeA N-terminal region (domain I and II) RD08_RS12095 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RD08_RS12100 PF01435 Peptidase family M48 RD08_RS12105 PF01264 Chorismate synthase RD08_RS12110 PF00563 EAL domain RD08_RS12110 PF08448 PAS fold RD08_RS12110 PF08447 PAS fold RD08_RS12110 PF00990 Diguanylate cyclase, GGDEF domain RD08_RS12125 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS12130 PF00005 ABC transporter RD08_RS12130 PF08402 TOBE domain RD08_RS12135 PF03466 LysR substrate binding domain RD08_RS12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS12140 PF00300 Histidine phosphatase superfamily (branch 1) RD08_RS12150 PF02142 MGS-like domain RD08_RS12150 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RD08_RS12150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS12155 PF00117 Glutamine amidotransferase class-I RD08_RS12155 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RD08_RS12160 PF00923 Transaldolase/Fructose-6-phosphate aldolase RD08_RS12185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD08_RS12185 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD08_RS12190 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS12190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS12190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS12195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS12195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS12195 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS12200 PF03658 RnfH family Ubiquitin RD08_RS12205 PF03364 Polyketide cyclase / dehydrase and lipid transport RD08_RS12215 PF01668 SmpB protein RD08_RS12220 PF08448 PAS fold RD08_RS12220 PF00990 Diguanylate cyclase, GGDEF domain RD08_RS12225 PF01145 SPFH domain / Band 7 family RD08_RS12225 PF16200 C-terminal region of band_7 RD08_RS12240 PF00117 Glutamine amidotransferase class-I RD08_RS12240 PF00958 GMP synthase C terminal domain RD08_RS12245 PF00391 PEP-utilising enzyme, mobile domain RD08_RS12245 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RD08_RS12245 PF02896 PEP-utilising enzyme, TIM barrel domain RD08_RS12250 PF03618 Kinase/pyrophosphorylase RD08_RS12255 PF00588 SpoU rRNA Methylase family RD08_RS12255 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD08_RS12260 PF01351 Ribonuclease HII RD08_RS12265 PF02684 Lipid-A-disaccharide synthetase RD08_RS12270 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RD08_RS12270 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS12275 PF07977 FabA-like domain RD08_RS12280 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS12280 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RD08_RS12285 PF03938 Outer membrane protein (OmpH-like) RD08_RS12290 PF07244 Surface antigen variable number repeat RD08_RS12290 PF01103 Surface antigen RD08_RS12295 PF02163 Peptidase family M50 RD08_RS12295 PF17820 PDZ domain RD08_RS12300 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RD08_RS12300 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RD08_RS12300 PF13288 DXP reductoisomerase C-terminal domain RD08_RS12310 PF01255 Putative undecaprenyl diphosphate synthase RD08_RS12315 PF01765 Ribosome recycling factor RD08_RS12320 PF00696 Amino acid kinase family RD08_RS12325 PF00889 Elongation factor TS RD08_RS12330 PF00318 Ribosomal protein S2 RD08_RS12335 PF00557 Metallopeptidase family M24 RD08_RS12340 PF01966 HD domain RD08_RS12340 PF01909 Nucleotidyltransferase domain RD08_RS12340 PF08335 GlnD PII-uridylyltransferase RD08_RS12355 PF00156 Phosphoribosyl transferase domain RD08_RS12370 PF08245 Mur ligase middle domain RD08_RS12370 PF02875 Mur ligase family, glutamate ligase domain RD08_RS12380 PF02465 Flagellar hook-associated protein 2 N-terminus RD08_RS12380 PF07195 Flagellar hook-associated protein 2 C-terminus RD08_RS12380 PF07196 Flagellin hook IN motif RD08_RS12385 PF02561 Flagellar protein FliS RD08_RS12405 PF01312 FlhB HrpN YscU SpaS Family RD08_RS12415 PF02049 Flagellar hook-basal body complex protein FliE RD08_RS12420 PF01514 Secretory protein of YscJ/FliF family RD08_RS12420 PF08345 Flagellar M-ring protein C-terminal RD08_RS12425 PF14841 FliG middle domain RD08_RS12425 PF14842 FliG N-terminal domain RD08_RS12425 PF01706 FliG C-terminal domain RD08_RS12435 PF18269 T3SS EscN ATPase C-terminal domain RD08_RS12435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD08_RS12460 PF03748 Flagellar basal body-associated protein FliL RD08_RS12465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD08_RS12465 PF02154 Flagellar motor switch protein FliM RD08_RS12470 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD08_RS12470 PF16973 Flagellar motor switch protein FliN N-terminal RD08_RS12475 PF04347 Flagellar biosynthesis protein, FliO RD08_RS12480 PF00813 FliP family RD08_RS12485 PF01313 Bacterial export proteins, family 3 RD08_RS12490 PF01311 Bacterial export proteins, family 1 RD08_RS12500 PF08447 PAS fold RD08_RS12500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD08_RS12505 PF02203 Tar ligand binding domain homologue RD08_RS12505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD08_RS12505 PF00672 HAMP domain RD08_RS12510 PF02203 Tar ligand binding domain homologue RD08_RS12510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD08_RS12510 PF00672 HAMP domain RD08_RS12515 PF00669 Bacterial flagellin N-terminal helical region RD08_RS12520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD08_RS12520 PF00460 Flagella basal body rod protein RD08_RS12525 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RD08_RS12525 PF10135 Rod binding protein RD08_RS12530 PF02119 Flagellar P-ring protein RD08_RS12535 PF02107 Flagellar L-ring protein RD08_RS12540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD08_RS12540 PF00460 Flagella basal body rod protein RD08_RS12545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD08_RS12545 PF00460 Flagella basal body rod protein RD08_RS12550 PF07559 Flagellar basal body protein FlaE RD08_RS12550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD08_RS12550 PF00460 Flagella basal body rod protein RD08_RS12555 PF13861 FlgD Tudor-like domain RD08_RS12555 PF03963 Flagellar hook capping protein - N-terminal region RD08_RS12555 PF13860 FlgD Ig-like domain RD08_RS12560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD08_RS12560 PF00460 Flagella basal body rod protein RD08_RS12565 PF00460 Flagella basal body rod protein RD08_RS12575 PF04316 Anti-sigma-28 factor, FlgM RD08_RS12585 PF00448 SRP54-type protein, GTPase domain RD08_RS12595 PF01312 FlhB HrpN YscU SpaS Family RD08_RS12605 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS12610 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS12615 PF00005 ABC transporter RD08_RS12625 PF02558 Ketopantoate reductase PanE/ApbA RD08_RS12625 PF08546 Ketopantoate reductase PanE/ApbA C terminal RD08_RS12630 PF13378 Enolase C-terminal domain-like RD08_RS12635 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS12645 PF00694 Aconitase C-terminal domain RD08_RS12650 PF00356 Bacterial regulatory proteins, lacI family RD08_RS12655 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS12660 PF02515 CoA-transferase family III RD08_RS12670 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS12675 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS12675 PF13380 CoA binding domain RD08_RS12680 PF00392 Bacterial regulatory proteins, gntR family RD08_RS12680 PF07729 FCD domain RD08_RS12685 PF03328 HpcH/HpaI aldolase/citrate lyase family RD08_RS12695 PF03466 LysR substrate binding domain RD08_RS12695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS12705 PF12951 Passenger-associated-transport-repeat RD08_RS12715 PF03551 Transcriptional regulator PadR-like family RD08_RS12720 PF03372 Endonuclease/Exonuclease/phosphatase family RD08_RS12725 PF13091 PLD-like domain RD08_RS12740 PF03706 Lysylphosphatidylglycerol synthase TM region RD08_RS12770 PF11896 Domain of unknown function (DUF3416) RD08_RS12770 PF00128 Alpha amylase, catalytic domain RD08_RS12775 PF16657 Maltogenic Amylase, C-terminal domain RD08_RS12775 PF00128 Alpha amylase, catalytic domain RD08_RS12780 PF00128 Alpha amylase, catalytic domain RD08_RS12780 PF02806 Alpha amylase, C-terminal all-beta domain RD08_RS12780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD08_RS12785 PF00128 Alpha amylase, catalytic domain RD08_RS12785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD08_RS12790 PF00128 Alpha amylase, catalytic domain RD08_RS12790 PF11941 Domain of unknown function (DUF3459) RD08_RS12790 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD08_RS12800 PF02446 4-alpha-glucanotransferase RD08_RS12805 PF00128 Alpha amylase, catalytic domain RD08_RS12815 PF08543 Phosphomethylpyrimidine kinase RD08_RS12820 PF01168 Alanine racemase, N-terminal domain RD08_RS12825 PF00392 Bacterial regulatory proteins, gntR family RD08_RS12825 PF00155 Aminotransferase class I and II RD08_RS12840 PF00582 Universal stress protein family RD08_RS12845 PF00248 Aldo/keto reductase family RD08_RS12855 PF01447 Thermolysin metallopeptidase, catalytic domain RD08_RS12855 PF16485 Protealysin propeptide RD08_RS12855 PF02868 Thermolysin metallopeptidase, alpha-helical domain RD08_RS12860 PF07681 DoxX RD08_RS12880 PF00578 AhpC/TSA family RD08_RS12885 PF03960 ArsC family RD08_RS12890 PF02515 CoA-transferase family III RD08_RS12910 PF00255 Glutathione peroxidase RD08_RS12915 PF02798 Glutathione S-transferase, N-terminal domain RD08_RS12915 PF00043 Glutathione S-transferase, C-terminal domain RD08_RS12930 PF10437 Bacterial lipoate protein ligase C-terminus RD08_RS12930 PF03099 Biotin/lipoate A/B protein ligase family RD08_RS12945 PF02666 Phosphatidylserine decarboxylase RD08_RS12950 PF01070 FMN-dependent dehydrogenase RD08_RS12955 PF03180 NLPA lipoprotein RD08_RS12960 PF08808 RES domain RD08_RS12970 PF04241 Protein of unknown function (DUF423) RD08_RS12990 PF13458 Periplasmic binding protein RD08_RS12995 PF17912 MalK OB fold domain RD08_RS12995 PF00005 ABC transporter RD08_RS13000 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS13005 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS13010 PF13416 Bacterial extracellular solute-binding protein RD08_RS13015 PF14748 Pyrroline-5-carboxylate reductase dimerisation RD08_RS13015 PF03807 NADP oxidoreductase coenzyme F420-dependent RD08_RS13020 PF02592 Putative vitamin uptake transporter RD08_RS13030 PF13458 Periplasmic binding protein RD08_RS13035 PF02653 Branched-chain amino acid transport system / permease component RD08_RS13040 PF02653 Branched-chain amino acid transport system / permease component RD08_RS13040 PF11862 Domain of unknown function (DUF3382) RD08_RS13045 PF00005 ABC transporter RD08_RS13045 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS13050 PF00005 ABC transporter RD08_RS13055 PF01177 Asp/Glu/Hydantoin racemase RD08_RS13070 PF00892 EamA-like transporter family RD08_RS13080 PF04235 Protein of unknown function (DUF418) RD08_RS13085 PF00521 DNA gyrase/topoisomerase IV, subunit A RD08_RS13095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS13095 PF01751 Toprim domain RD08_RS13095 PF00204 DNA gyrase B RD08_RS13095 PF00986 DNA gyrase B subunit, carboxyl terminus RD08_RS13100 PF00085 Thioredoxin RD08_RS13105 PF07498 Rho termination factor, N-terminal domain RD08_RS13105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD08_RS13105 PF07497 Rho termination factor, RNA-binding domain RD08_RS13115 PF08335 GlnD PII-uridylyltransferase RD08_RS13115 PF03710 Glutamate-ammonia ligase adenylyltransferase RD08_RS13120 PF02677 Epoxyqueuosine reductase QueH RD08_RS13125 PF03315 Serine dehydratase beta chain RD08_RS13125 PF03313 Serine dehydratase alpha chain RD08_RS13130 PF02690 Na+/Pi-cotransporter RD08_RS13135 PF01738 Dienelactone hydrolase family RD08_RS13145 PF01367 5'-3' exonuclease, C-terminal SAM fold RD08_RS13145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RD08_RS13145 PF01612 3'-5' exonuclease RD08_RS13145 PF00476 DNA polymerase family A RD08_RS13150 PF03641 Possible lysine decarboxylase RD08_RS13165 PF00009 Elongation factor Tu GTP binding domain RD08_RS13165 PF00679 Elongation factor G C-terminus RD08_RS13165 PF03144 Elongation factor Tu domain 2 RD08_RS13170 PF16198 tRNA pseudouridylate synthase B C-terminal domain RD08_RS13170 PF01509 TruB family pseudouridylate synthase (N terminal domain) RD08_RS13175 PF02033 Ribosome-binding factor A RD08_RS13180 PF04760 Translation initiation factor IF-2, N-terminal region RD08_RS13180 PF00009 Elongation factor Tu GTP binding domain RD08_RS13180 PF11987 Translation-initiation factor 2 RD08_RS13180 PF08364 Bacterial translation initiation factor IF-2 associated region RD08_RS13185 PF13184 NusA-like KH domain RD08_RS13185 PF08529 NusA N-terminal domain RD08_RS13190 PF17384 RimP C-terminal SH3 domain RD08_RS13190 PF02576 RimP N-terminal domain RD08_RS13195 PF01479 S4 domain RD08_RS13195 PF00849 RNA pseudouridylate synthase RD08_RS13200 PF04079 Segregation and condensation complex subunit ScpB RD08_RS13210 PF03466 LysR substrate binding domain RD08_RS13210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13215 PF00881 Nitroreductase family RD08_RS13220 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD08_RS13220 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD08_RS13240 PF14497 Glutathione S-transferase, C-terminal domain RD08_RS13240 PF02798 Glutathione S-transferase, N-terminal domain RD08_RS13245 PF02401 LytB protein RD08_RS13250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD08_RS13255 PF04002 RadC-like JAB domain RD08_RS13260 PF04199 Putative cyclase RD08_RS13265 PF03301 Tryptophan 2,3-dioxygenase RD08_RS13270 PF01197 Ribosomal protein L31 RD08_RS13280 PF01554 MatE RD08_RS13295 PF18073 Rubredoxin metal binding domain RD08_RS13300 PF12034 Domain of unknown function (DUF3520) RD08_RS13300 PF12450 von Willebrand factor RD08_RS13300 PF00092 von Willebrand factor type A domain RD08_RS13305 PF04542 Sigma-70 region 2 RD08_RS13305 PF04545 Sigma-70, region 4 RD08_RS13325 PF00842 Alanine racemase, C-terminal domain RD08_RS13325 PF01168 Alanine racemase, N-terminal domain RD08_RS13340 PF01593 Flavin containing amine oxidoreductase RD08_RS13340 PF01593 Flavin containing amine oxidoreductase RD08_RS13345 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD08_RS13355 PF01061 ABC-2 type transporter RD08_RS13360 PF00005 ABC transporter RD08_RS13380 PF02424 ApbE family RD08_RS13385 PF00667 FAD binding domain RD08_RS13385 PF00258 Flavodoxin RD08_RS13385 PF00175 Oxidoreductase NAD-binding domain RD08_RS13395 PF07969 Amidohydrolase family RD08_RS13400 PF03466 LysR substrate binding domain RD08_RS13400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13410 PF09370 Phosphoenolpyruvate hydrolase-like RD08_RS13425 PF03797 Autotransporter beta-domain RD08_RS13425 PF03212 Pertactin RD08_RS13430 PF03212 Pertactin RD08_RS13430 PF03797 Autotransporter beta-domain RD08_RS13440 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS13440 PF10431 C-terminal, D2-small domain, of ClpB protein RD08_RS13440 PF07724 AAA domain (Cdc48 subfamily) RD08_RS13440 PF02861 Clp amino terminal domain, pathogenicity island component RD08_RS13440 PF17871 AAA lid domain RD08_RS13445 PF00027 Cyclic nucleotide-binding domain RD08_RS13445 PF13545 Crp-like helix-turn-helix domain RD08_RS13460 PF00293 NUDIX domain RD08_RS13465 PF12843 Putative quorum-sensing-regulated virulence factor RD08_RS13475 PF08281 Sigma-70, region 4 RD08_RS13475 PF04542 Sigma-70 region 2 RD08_RS13475 PF12680 SnoaL-like domain RD08_RS13480 PF02627 Carboxymuconolactone decarboxylase family RD08_RS13510 PF00155 Aminotransferase class I and II RD08_RS13515 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS13520 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS13525 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS13530 PF00005 ABC transporter RD08_RS13550 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD08_RS13575 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS13580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD08_RS13580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD08_RS13585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13585 PF03466 LysR substrate binding domain RD08_RS13595 PF02016 LD-carboxypeptidase N-terminal domain RD08_RS13595 PF17676 LD-carboxypeptidase C-terminal domain RD08_RS13610 PF07690 Major Facilitator Superfamily RD08_RS13620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13620 PF03466 LysR substrate binding domain RD08_RS13625 PF13378 Enolase C-terminal domain-like RD08_RS13625 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RD08_RS13630 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS13650 PF02567 Phenazine biosynthesis-like protein RD08_RS13660 PF03239 Iron permease FTR1 family RD08_RS13670 PF10634 Fe2+ transport protein RD08_RS13675 PF05233 PHB accumulation regulatory domain RD08_RS13675 PF07879 PHB/PHA accumulation regulator DNA-binding domain RD08_RS13680 PF00106 short chain dehydrogenase RD08_RS13685 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RD08_RS13690 PF02578 Multi-copper polyphenol oxidoreductase laccase RD08_RS13695 PF01479 S4 domain RD08_RS13695 PF00849 RNA pseudouridylate synthase RD08_RS13700 PF13525 Outer membrane lipoprotein RD08_RS13705 PF13307 Helicase C-terminal domain RD08_RS13705 PF04851 Type III restriction enzyme, res subunit RD08_RS13710 PF17674 HHH domain RD08_RS13710 PF00575 S1 RNA binding domain RD08_RS13710 PF09371 Tex-like protein N-terminal domain RD08_RS13710 PF16921 Tex protein YqgF-like domain RD08_RS13715 PF00579 tRNA synthetases class I (W and Y) RD08_RS13735 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS13745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13745 PF03466 LysR substrate binding domain RD08_RS13755 PF03969 AFG1-like ATPase RD08_RS13760 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS13760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS13765 PF02817 e3 binding domain RD08_RS13765 PF00364 Biotin-requiring enzyme RD08_RS13765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD08_RS13770 PF16870 2-oxoglutarate dehydrogenase C-terminal RD08_RS13770 PF00676 Dehydrogenase E1 component RD08_RS13770 PF16078 2-oxoglutarate dehydrogenase N-terminus RD08_RS13770 PF02779 Transketolase, pyrimidine binding domain RD08_RS13775 PF03169 OPT oligopeptide transporter protein RD08_RS13780 PF03169 OPT oligopeptide transporter protein RD08_RS13785 PF01037 Lrp/AsnC ligand binding domain RD08_RS13790 PF00456 Transketolase, thiamine diphosphate binding domain RD08_RS13790 PF17831 Pyruvate dehydrogenase E1 component middle domain RD08_RS13795 PF01515 Phosphate acetyl/butaryl transferase RD08_RS13795 PF03949 Malic enzyme, NAD binding domain RD08_RS13795 PF00390 Malic enzyme, N-terminal domain RD08_RS13800 PF16970 Type-1 fimbrial protein, A RD08_RS13810 PF01272 Transcription elongation factor, GreA/GreB, C-term RD08_RS13810 PF03449 Transcription elongation factor, N-terminal RD08_RS13815 PF02811 PHP domain RD08_RS13850 PF01026 TatD related DNase RD08_RS13855 PF00005 ABC transporter RD08_RS13860 PF02687 FtsX-like permease family RD08_RS13860 PF12704 MacB-like periplasmic core domain RD08_RS13870 PF01368 DHH family RD08_RS13870 PF17768 RecJ OB domain RD08_RS13870 PF02272 DHHA1 domain RD08_RS13875 PF00472 RF-1 domain RD08_RS13875 PF03462 PCRF domain RD08_RS13880 PF00106 short chain dehydrogenase RD08_RS13885 PF00152 tRNA synthetases class II (D, K and N) RD08_RS13885 PF01336 OB-fold nucleic acid binding domain RD08_RS13895 PF00440 Bacterial regulatory proteins, tetR family RD08_RS13895 PF17932 Tetracyclin repressor-like, C-terminal domain RD08_RS13900 PF00501 AMP-binding enzyme RD08_RS13905 PF00005 ABC transporter RD08_RS13925 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS13925 PF00005 ABC transporter RD08_RS13935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS13935 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS13935 PF07689 KaiB domain RD08_RS13940 PF00072 Response regulator receiver domain RD08_RS13940 PF00486 Transcriptional regulatory protein, C terminal RD08_RS13945 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RD08_RS13955 PF03631 Virulence factor BrkB RD08_RS13970 PF01207 Dihydrouridine synthase (Dus) RD08_RS13975 PF01636 Phosphotransferase enzyme family RD08_RS13995 PF01985 CRS1 / YhbY (CRM) domain RD08_RS14000 PF01728 FtsJ-like methyltransferase RD08_RS14005 PF01434 Peptidase family M41 RD08_RS14005 PF06480 FtsH Extracellular RD08_RS14005 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS14005 PF17862 AAA+ lid domain RD08_RS14010 PF00809 Pterin binding enzyme RD08_RS14015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD08_RS14015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD08_RS14015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD08_RS14015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD08_RS14025 PF02541 Ppx/GppA phosphatase family RD08_RS14030 PF13090 Polyphosphate kinase C-terminal domain 2 RD08_RS14030 PF02503 Polyphosphate kinase middle domain RD08_RS14030 PF17941 Polyphosphate kinase C-terminal domain 1 RD08_RS14030 PF13089 Polyphosphate kinase N-terminal domain RD08_RS14035 PF12849 PBP superfamily domain RD08_RS14040 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS14045 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS14050 PF00005 ABC transporter RD08_RS14065 PF01337 Barstar (barnase inhibitor) RD08_RS14075 PF00390 Malic enzyme, N-terminal domain RD08_RS14075 PF03949 Malic enzyme, NAD binding domain RD08_RS14075 PF01515 Phosphate acetyl/butaryl transferase RD08_RS14085 PF00155 Aminotransferase class I and II RD08_RS14090 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RD08_RS14090 PF01464 Transglycosylase SLT domain RD08_RS14095 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RD08_RS14120 PF10414 Sirohaem synthase dimerisation region RD08_RS14120 PF14824 Sirohaem biosynthesis protein central RD08_RS14120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD08_RS14125 PF03212 Pertactin RD08_RS14125 PF03797 Autotransporter beta-domain RD08_RS14140 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RD08_RS14145 PF02547 Queuosine biosynthesis protein RD08_RS14150 PF01702 Queuine tRNA-ribosyltransferase RD08_RS14155 PF02699 Preprotein translocase subunit RD08_RS14160 PF13721 SecD export protein N-terminal TM region RD08_RS14160 PF07549 SecD/SecF GG Motif RD08_RS14160 PF02355 Protein export membrane protein RD08_RS14165 PF02355 Protein export membrane protein RD08_RS14165 PF07549 SecD/SecF GG Motif RD08_RS14180 PF00919 Uncharacterized protein family UPF0004 RD08_RS14180 PF01938 TRAM domain RD08_RS14180 PF04055 Radical SAM superfamily RD08_RS14185 PF02562 PhoH-like protein RD08_RS14190 PF02130 Uncharacterized protein family UPF0054 RD08_RS14195 PF03471 Transporter associated domain RD08_RS14195 PF00571 CBS domain RD08_RS14200 PF00795 Carbon-nitrogen hydrolase RD08_RS14205 PF00248 Aldo/keto reductase family RD08_RS14230 PF04344 Chemotaxis phosphatase, CheZ RD08_RS14235 PF00072 Response regulator receiver domain RD08_RS14240 PF01339 CheB methylesterase RD08_RS14240 PF00072 Response regulator receiver domain RD08_RS14250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD08_RS14250 PF02203 Tar ligand binding domain homologue RD08_RS14250 PF00672 HAMP domain RD08_RS14255 PF01584 CheW-like domain RD08_RS14260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS14260 PF01627 Hpt domain RD08_RS14260 PF09078 CheY binding RD08_RS14260 PF01584 CheW-like domain RD08_RS14260 PF02895 Signal transducing histidine kinase, homodimeric domain RD08_RS14265 PF00072 Response regulator receiver domain RD08_RS14270 PF13677 Membrane MotB of proton-channel complex MotA/MotB RD08_RS14270 PF00691 OmpA family RD08_RS14275 PF01618 MotA/TolQ/ExbB proton channel family RD08_RS14280 PF05280 Flagellar transcriptional activator (FlhC) RD08_RS14285 PF05247 Flagellar transcriptional activator (FlhD) RD08_RS14290 PF04542 Sigma-70 region 2 RD08_RS14290 PF04545 Sigma-70, region 4 RD08_RS14290 PF04539 Sigma-70 region 3 RD08_RS14300 PF01176 Translation initiation factor 1A / IF-1 RD08_RS14310 PF01551 Peptidase family M23 RD08_RS14310 PF01476 LysM domain RD08_RS14310 PF08525 Opacity-associated protein A N-terminal motif RD08_RS14320 PF00994 Probable molybdopterin binding domain RD08_RS14330 PF03591 AzlC protein RD08_RS14340 PF01556 DnaJ C terminal domain RD08_RS14340 PF00226 DnaJ domain RD08_RS14360 PF02798 Glutathione S-transferase, N-terminal domain RD08_RS14360 PF14834 Glutathione S-transferase, C-terminal domain RD08_RS14365 PF11339 Protein of unknown function (DUF3141) RD08_RS14370 PF01515 Phosphate acetyl/butaryl transferase RD08_RS14375 PF00871 Acetokinase family RD08_RS14385 PF00162 Phosphoglycerate kinase RD08_RS14390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD08_RS14390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RD08_RS14395 PF02780 Transketolase, C-terminal domain RD08_RS14395 PF00456 Transketolase, thiamine diphosphate binding domain RD08_RS14395 PF02779 Transketolase, pyrimidine binding domain RD08_RS14400 PF04452 RNA methyltransferase RD08_RS14410 PF00700 Bacterial flagellin C-terminal helical region RD08_RS14410 PF00669 Bacterial flagellin N-terminal helical region RD08_RS14415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS14415 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS14420 PF02817 e3 binding domain RD08_RS14420 PF00364 Biotin-requiring enzyme RD08_RS14420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD08_RS14425 PF17831 Pyruvate dehydrogenase E1 component middle domain RD08_RS14425 PF00456 Transketolase, thiamine diphosphate binding domain RD08_RS14430 PF00989 PAS fold RD08_RS14430 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS14430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS14435 PF00072 Response regulator receiver domain RD08_RS14435 PF00196 Bacterial regulatory proteins, luxR family RD08_RS14440 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD08_RS14440 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD08_RS14445 PF01432 Peptidase family M3 RD08_RS14450 PF02630 SCO1/SenC RD08_RS14460 PF02321 Outer membrane efflux protein RD08_RS14465 PF00873 AcrB/AcrD/AcrF family RD08_RS14470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD08_RS14470 PF00529 HlyD membrane-fusion protein of T1SS RD08_RS14475 PF03466 LysR substrate binding domain RD08_RS14475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS14480 PF01479 S4 domain RD08_RS14480 PF00849 RNA pseudouridylate synthase RD08_RS14485 PF04345 Chorismate lyase RD08_RS14490 PF07690 Major Facilitator Superfamily RD08_RS14500 PF00248 Aldo/keto reductase family RD08_RS14510 PF00293 NUDIX domain RD08_RS14515 PF01245 Ribosomal protein L19 RD08_RS14530 PF04055 Radical SAM superfamily RD08_RS14540 PF01507 Phosphoadenosine phosphosulfate reductase family RD08_RS14545 PF01507 Phosphoadenosine phosphosulfate reductase family RD08_RS14550 PF12857 TOBE-like domain RD08_RS14550 PF17850 CysA C-terminal regulatory domain RD08_RS14550 PF00005 ABC transporter RD08_RS14555 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS14560 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS14575 PF10417 C-terminal domain of 1-Cys peroxiredoxin RD08_RS14575 PF00578 AhpC/TSA family RD08_RS14580 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD08_RS14580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS14580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS14580 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS14585 PF01012 Electron transfer flavoprotein domain RD08_RS14585 PF00766 Electron transfer flavoprotein FAD-binding domain RD08_RS14590 PF01012 Electron transfer flavoprotein domain RD08_RS14595 PF00850 Histone deacetylase domain RD08_RS14600 PF13406 Transglycosylase SLT domain RD08_RS14605 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS14615 PF10531 SLBB domain RD08_RS14620 PF01370 NAD dependent epimerase/dehydratase family RD08_RS14625 PF00294 pfkB family carbohydrate kinase RD08_RS14630 PF18073 Rubredoxin metal binding domain RD08_RS14640 PF00216 Bacterial DNA-binding protein RD08_RS14645 PF00575 S1 RNA binding domain RD08_RS14650 PF02224 Cytidylate kinase RD08_RS14655 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD08_RS14660 PF02153 Prephenate dehydrogenase RD08_RS14665 PF01842 ACT domain RD08_RS14665 PF01817 Chorismate mutase type II RD08_RS14665 PF00800 Prephenate dehydratase RD08_RS14670 PF00266 Aminotransferase class-V RD08_RS14675 PF03989 DNA gyrase C-terminal domain, beta-propeller RD08_RS14675 PF00521 DNA gyrase/topoisomerase IV, subunit A RD08_RS14680 PF00691 OmpA family RD08_RS14690 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS14695 PF07690 Major Facilitator Superfamily RD08_RS14720 PF03466 LysR substrate binding domain RD08_RS14720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS14725 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS14735 PF11799 impB/mucB/samB family C-terminal domain RD08_RS14735 PF00817 impB/mucB/samB family RD08_RS14735 PF11798 IMS family HHH motif RD08_RS14745 PF00326 Prolyl oligopeptidase family RD08_RS14750 PF00905 Penicillin binding protein transpeptidase domain RD08_RS14750 PF17092 Penicillin-binding protein OB-like domain RD08_RS14750 PF00912 Transglycosylase RD08_RS14755 PF00149 Calcineurin-like phosphoesterase RD08_RS14770 PF00248 Aldo/keto reductase family RD08_RS14775 PF00248 Aldo/keto reductase family RD08_RS14780 PF00005 ABC transporter RD08_RS14780 PF00664 ABC transporter transmembrane region RD08_RS14825 PF01039 Carboxyl transferase domain RD08_RS14830 PF02785 Biotin carboxylase C-terminal domain RD08_RS14830 PF00289 Biotin carboxylase, N-terminal domain RD08_RS14830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS14835 PF00392 Bacterial regulatory proteins, gntR family RD08_RS14835 PF07702 UTRA domain RD08_RS14855 PF02436 Conserved carboxylase domain RD08_RS14855 PF00682 HMGL-like RD08_RS14855 PF00364 Biotin-requiring enzyme RD08_RS14860 PF00364 Biotin-requiring enzyme RD08_RS14870 PF01966 HD domain RD08_RS14890 PF07317 Flagellar regulator YcgR RD08_RS14890 PF07238 PilZ domain RD08_RS14905 PF05724 Thiopurine S-methyltransferase (TPMT) RD08_RS14910 PF00005 ABC transporter RD08_RS14910 PF00664 ABC transporter transmembrane region RD08_RS14925 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS14925 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS14925 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS14930 PF10369 Small subunit of acetolactate synthase RD08_RS14935 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RD08_RS14935 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RD08_RS14940 PF01066 CDP-alcohol phosphatidyltransferase RD08_RS14950 PF00312 Ribosomal protein S15 RD08_RS14955 PF03725 3' exoribonuclease family, domain 2 RD08_RS14955 PF01138 3' exoribonuclease family, domain 1 RD08_RS14955 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RD08_RS14955 PF00013 KH domain RD08_RS14955 PF00575 S1 RNA binding domain RD08_RS14970 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS14970 PF13291 ACT domain RD08_RS14985 PF08990 Erythronolide synthase docking RD08_RS14985 PF16197 Ketoacyl-synthetase C-terminal extension RD08_RS14985 PF00109 Beta-ketoacyl synthase, N-terminal domain RD08_RS14985 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS14985 PF02801 Beta-ketoacyl synthase, C-terminal domain RD08_RS14985 PF00698 Acyl transferase domain RD08_RS14985 PF14765 Polyketide synthase dehydratase RD08_RS14985 PF08659 KR domain RD08_RS14985 PF00550 Phosphopantetheine attachment site RD08_RS14990 PF00121 Triosephosphate isomerase RD08_RS14995 PF03840 Preprotein translocase SecG subunit RD08_RS15005 PF02028 BCCT, betaine/carnitine/choline family transporter RD08_RS15015 PF07476 Methylaspartate ammonia-lyase C-terminus RD08_RS15015 PF05034 Methylaspartate ammonia-lyase N-terminus RD08_RS15020 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15035 PF00206 Lyase RD08_RS15035 PF14698 Argininosuccinate lyase C-terminal RD08_RS15040 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS15055 PF03466 LysR substrate binding domain RD08_RS15060 PF01053 Cys/Met metabolism PLP-dependent enzyme RD08_RS15065 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD08_RS15080 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15085 PF01266 FAD dependent oxidoreductase RD08_RS15095 PF01968 Hydantoinase/oxoprolinase RD08_RS15095 PF05378 Hydantoinase/oxoprolinase N-terminal region RD08_RS15105 PF00127 Copper binding proteins, plastocyanin/azurin family RD08_RS15115 PF02321 Outer membrane efflux protein RD08_RS15120 PF00873 AcrB/AcrD/AcrF family RD08_RS15125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD08_RS15130 PF01638 HxlR-like helix-turn-helix RD08_RS15140 PF02028 BCCT, betaine/carnitine/choline family transporter RD08_RS15145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS15145 PF03466 LysR substrate binding domain RD08_RS15150 PF00781 Diacylglycerol kinase catalytic domain RD08_RS15160 PF01569 PAP2 superfamily RD08_RS15185 PF13609 Gram-negative porin RD08_RS15190 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RD08_RS15195 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RD08_RS15200 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RD08_RS15205 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RD08_RS15215 PF10531 SLBB domain RD08_RS15215 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RD08_RS15215 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RD08_RS15220 PF00384 Molybdopterin oxidoreductase RD08_RS15220 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RD08_RS15220 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RD08_RS15225 PF00146 NADH dehydrogenase RD08_RS15230 PF12838 4Fe-4S dicluster domain RD08_RS15235 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RD08_RS15240 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD08_RS15245 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD08_RS15245 PF00361 Proton-conducting membrane transporter RD08_RS15250 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus RD08_RS15250 PF00361 Proton-conducting membrane transporter RD08_RS15255 PF00361 Proton-conducting membrane transporter RD08_RS15265 PF00593 TonB dependent receptor RD08_RS15265 PF07715 TonB-dependent Receptor Plug Domain RD08_RS15270 PF00593 TonB dependent receptor RD08_RS15270 PF07715 TonB-dependent Receptor Plug Domain RD08_RS15285 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS15285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS15285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS15290 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15295 PF03466 LysR substrate binding domain RD08_RS15295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS15305 PF03461 TRCF domain RD08_RS15305 PF00271 Helicase conserved C-terminal domain RD08_RS15305 PF00270 DEAD/DEAH box helicase RD08_RS15305 PF02559 CarD-like/TRCF domain RD08_RS15305 PF17757 UvrB interaction domain RD08_RS15310 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RD08_RS15315 PF02542 YgbB family RD08_RS15325 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RD08_RS15330 PF11940 Domain of unknown function (DUF3458) Ig-like fold RD08_RS15330 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RD08_RS15330 PF01433 Peptidase family M1 domain RD08_RS15350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS15350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS15350 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS15360 PF09084 NMT1/THI5 like RD08_RS15365 PF00005 ABC transporter RD08_RS15370 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS15380 PF13193 AMP-binding enzyme C-terminal domain RD08_RS15380 PF00501 AMP-binding enzyme RD08_RS15385 PF00107 Zinc-binding dehydrogenase RD08_RS15385 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS15390 PF00392 Bacterial regulatory proteins, gntR family RD08_RS15390 PF07729 FCD domain RD08_RS15400 PF00392 Bacterial regulatory proteins, gntR family RD08_RS15400 PF07729 FCD domain RD08_RS15405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS15405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS15405 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS15425 PF01063 Amino-transferase class IV RD08_RS15430 PF00005 ABC transporter RD08_RS15435 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS15445 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS15450 PF03466 LysR substrate binding domain RD08_RS15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS15455 PF02321 Outer membrane efflux protein RD08_RS15460 PF13533 Biotin-lipoyl like RD08_RS15465 PF00664 ABC transporter transmembrane region RD08_RS15465 PF00005 ABC transporter RD08_RS15465 PF03412 Peptidase C39 family RD08_RS15470 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RD08_RS15470 PF02382 N-terminal domain in RTX protein RD08_RS15470 PF03497 Anthrax toxin LF subunit RD08_RS15480 PF02794 RTX toxin acyltransferase family RD08_RS15485 PF00171 Aldehyde dehydrogenase family RD08_RS15495 PF01266 FAD dependent oxidoreductase RD08_RS15500 PF02538 Hydantoinase B/oxoprolinase RD08_RS15505 PF01968 Hydantoinase/oxoprolinase RD08_RS15505 PF05378 Hydantoinase/oxoprolinase N-terminal region RD08_RS15510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS15510 PF03466 LysR substrate binding domain RD08_RS15520 PF00348 Polyprenyl synthetase RD08_RS15530 PF00829 Ribosomal prokaryotic L21 protein RD08_RS15535 PF01016 Ribosomal L27 protein RD08_RS15540 PF01018 GTP1/OBG RD08_RS15540 PF01926 50S ribosome-binding GTPase RD08_RS15545 PF01472 PUA domain RD08_RS15545 PF00696 Amino acid kinase family RD08_RS15585 PF16220 Domain of unknown function (DUF4880) RD08_RS15585 PF04773 FecR protein RD08_RS15590 PF07715 TonB-dependent Receptor Plug Domain RD08_RS15590 PF00593 TonB dependent receptor RD08_RS15595 PF04264 YceI-like domain RD08_RS15610 PF16653 Saccharopine dehydrogenase C-terminal domain RD08_RS15610 PF03435 Saccharopine dehydrogenase NADP binding domain RD08_RS15615 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD08_RS15635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS15640 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS15645 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS15650 PF00005 ABC transporter RD08_RS15650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS15655 PF01425 Amidase RD08_RS15660 PF00202 Aminotransferase class-III RD08_RS15680 PF04972 BON domain RD08_RS15680 PF00691 OmpA family RD08_RS15685 PF01329 Pterin 4 alpha carbinolamine dehydratase RD08_RS15695 PF00483 Nucleotidyl transferase RD08_RS15700 PF01636 Phosphotransferase enzyme family RD08_RS15705 PF04453 LPS transport system D RD08_RS15710 PF00639 PPIC-type PPIASE domain RD08_RS15710 PF09312 SurA N-terminal domain RD08_RS15715 PF00398 Ribosomal RNA adenine dimethylase RD08_RS15720 PF02595 Glycerate kinase family RD08_RS15725 PF02887 Pyruvate kinase, alpha/beta domain RD08_RS15725 PF00224 Pyruvate kinase, barrel domain RD08_RS15730 PF07670 Nucleoside recognition RD08_RS15735 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS15735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS15735 PF09317 Domain of unknown function (DUF1974) RD08_RS15735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS15750 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15755 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15760 PF00005 ABC transporter RD08_RS15765 PF01032 FecCD transport family RD08_RS15775 PF00691 OmpA family RD08_RS15780 PF04052 TolB amino-terminal domain RD08_RS15780 PF07676 WD40-like Beta Propeller Repeat RD08_RS15790 PF02472 Biopolymer transport protein ExbD/TolR RD08_RS15795 PF01618 MotA/TolQ/ExbB proton channel family RD08_RS15800 PF03061 Thioesterase superfamily RD08_RS15805 PF03129 Anticodon binding domain RD08_RS15805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD08_RS15805 PF04073 Aminoacyl-tRNA editing domain RD08_RS15810 PF00293 NUDIX domain RD08_RS15815 PF00486 Transcriptional regulatory protein, C terminal RD08_RS15815 PF00072 Response regulator receiver domain RD08_RS15825 PF02586 SOS response associated peptidase (SRAP) RD08_RS15890 PF06791 Prophage tail length tape measure protein RD08_RS16030 PF03180 NLPA lipoprotein RD08_RS16040 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RD08_RS16040 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RD08_RS16045 PF00005 ABC transporter RD08_RS16050 PF00005 ABC transporter RD08_RS16050 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS16055 PF02653 Branched-chain amino acid transport system / permease component RD08_RS16060 PF02653 Branched-chain amino acid transport system / permease component RD08_RS16065 PF13458 Periplasmic binding protein RD08_RS16070 PF01425 Amidase RD08_RS16075 PF00484 Carbonic anhydrase RD08_RS16090 PF16124 RecQ zinc-binding RD08_RS16090 PF00271 Helicase conserved C-terminal domain RD08_RS16090 PF09382 RQC domain RD08_RS16090 PF00270 DEAD/DEAH box helicase RD08_RS16090 PF00570 HRDC domain RD08_RS16095 PF05496 Holliday junction DNA helicase RuvB P-loop domain RD08_RS16095 PF05491 RuvB C-terminal winged helix domain RD08_RS16095 PF17864 RuvB AAA lid domain RD08_RS16100 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS16105 PF01370 NAD dependent epimerase/dehydratase family RD08_RS16110 PF07499 RuvA, C-terminal domain RD08_RS16110 PF01330 RuvA N terminal domain RD08_RS16115 PF02075 Crossover junction endodeoxyribonuclease RuvC RD08_RS16120 PF01808 AICARFT/IMPCHase bienzyme RD08_RS16120 PF02142 MGS-like domain RD08_RS16125 PF02954 Bacterial regulatory protein, Fis family RD08_RS16130 PF01207 Dihydrouridine synthase (Dus) RD08_RS16135 PF01494 FAD binding domain RD08_RS16145 PF00557 Metallopeptidase family M24 RD08_RS16145 PF05195 Aminopeptidase P, N-terminal domain RD08_RS16170 PF13609 Gram-negative porin RD08_RS16180 PF00483 Nucleotidyl transferase RD08_RS16185 PF01435 Peptidase family M48 RD08_RS16185 PF13181 Tetratricopeptide repeat RD08_RS16190 PF00561 alpha/beta hydrolase fold RD08_RS16205 PF01063 Amino-transferase class IV RD08_RS16220 PF00271 Helicase conserved C-terminal domain RD08_RS16220 PF00270 DEAD/DEAH box helicase RD08_RS16240 PF02464 Competence-damaged protein RD08_RS16240 PF00994 Probable molybdopterin binding domain RD08_RS16240 PF18146 Damage-inducible protein CinA KH domain RD08_RS16245 PF09339 IclR helix-turn-helix domain RD08_RS16245 PF01614 Bacterial transcriptional regulator RD08_RS16250 PF05785 Rho-activating domain of cytotoxic necrotizing factor RD08_RS16250 PF18807 Tripartite Tc toxins repeat RD08_RS16255 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS16265 PF01180 Dihydroorotate dehydrogenase RD08_RS16270 PF04377 Arginine-tRNA-protein transferase, C terminus RD08_RS16270 PF04376 Arginine-tRNA-protein transferase, N terminus RD08_RS16275 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RD08_RS16285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS16285 PF03466 LysR substrate binding domain RD08_RS16325 PF00392 Bacterial regulatory proteins, gntR family RD08_RS16325 PF07729 FCD domain RD08_RS16330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS16330 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS16330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS16335 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS16340 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD08_RS16345 PF00390 Malic enzyme, N-terminal domain RD08_RS16345 PF03949 Malic enzyme, NAD binding domain RD08_RS16345 PF01515 Phosphate acetyl/butaryl transferase RD08_RS16355 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS16360 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS16365 PF00005 ABC transporter RD08_RS16365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS16380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS16380 PF03466 LysR substrate binding domain RD08_RS16395 PF01022 Bacterial regulatory protein, arsR family RD08_RS16410 PF03594 Benzoate membrane transport protein RD08_RS16415 PF00037 4Fe-4S binding domain RD08_RS16420 PF01467 Cytidylyltransferase-like RD08_RS16430 PF02881 SRP54-type protein, helical bundle domain RD08_RS16430 PF00448 SRP54-type protein, GTPase domain RD08_RS16445 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS16450 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS16455 PF00005 ABC transporter RD08_RS16465 PF00005 ABC transporter RD08_RS16485 PF00925 GTP cyclohydrolase II RD08_RS16485 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD08_RS16490 PF00885 6,7-dimethyl-8-ribityllumazine synthase RD08_RS16495 PF01029 NusB family RD08_RS16500 PF00586 AIR synthase related protein, N-terminal domain RD08_RS16500 PF02769 AIR synthase related protein, C-terminal domain RD08_RS16505 PF04608 Phosphatidylglycerophosphatase A RD08_RS16510 PF00994 Probable molybdopterin binding domain RD08_RS16510 PF18146 Damage-inducible protein CinA KH domain RD08_RS16510 PF02464 Competence-damaged protein RD08_RS16515 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RD08_RS16520 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS16525 PF01219 Prokaryotic diacylglycerol kinase RD08_RS16530 PF03631 Virulence factor BrkB RD08_RS16535 PF03212 Pertactin RD08_RS16535 PF03797 Autotransporter beta-domain RD08_RS16540 PF00118 TCP-1/cpn60 chaperonin family RD08_RS16545 PF00166 Chaperonin 10 Kd subunit RD08_RS16565 PF00890 FAD binding domain RD08_RS16575 PF03466 LysR substrate binding domain RD08_RS16575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS16580 PF00890 FAD binding domain RD08_RS16605 PF00990 Diguanylate cyclase, GGDEF domain RD08_RS16610 PF00072 Response regulator receiver domain RD08_RS16640 PF12867 DinB superfamily RD08_RS16640 PF03781 Sulfatase-modifying factor enzyme 1 RD08_RS16645 PF10017 Histidine-specific methyltransferase, SAM-dependent RD08_RS16655 PF13396 Phospholipase_D-nuclease N-terminal RD08_RS16655 PF13091 PLD-like domain RD08_RS16665 PF01645 Conserved region in glutamate synthase RD08_RS16670 PF04143 Sulphur transport RD08_RS16675 PF03547 Membrane transport protein RD08_RS16680 PF13673 Acetyltransferase (GNAT) domain RD08_RS16700 PF08461 Ribonuclease R winged-helix domain RD08_RS16700 PF00575 S1 RNA binding domain RD08_RS16700 PF00773 RNB domain RD08_RS16700 PF08206 Ribonuclease B OB domain RD08_RS16700 PF17876 Cold shock domain RD08_RS16705 PF00588 SpoU rRNA Methylase family RD08_RS16705 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD08_RS16710 PF01053 Cys/Met metabolism PLP-dependent enzyme RD08_RS16715 PF13640 2OG-Fe(II) oxygenase superfamily RD08_RS16715 PF18331 PKHD-type hydroxylase C-terminal domain RD08_RS16720 PF00216 Bacterial DNA-binding protein RD08_RS16735 PF01618 MotA/TolQ/ExbB proton channel family RD08_RS16740 PF02472 Biopolymer transport protein ExbD/TolR RD08_RS16745 PF00486 Transcriptional regulatory protein, C terminal RD08_RS16745 PF00072 Response regulator receiver domain RD08_RS16750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS16750 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS16750 PF08521 Two-component sensor kinase N-terminal RD08_RS16755 PF02705 K+ potassium transporter RD08_RS16760 PF00764 Arginosuccinate synthase RD08_RS16765 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD08_RS16765 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD08_RS16770 PF00202 Aminotransferase class-III RD08_RS16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS16780 PF03466 LysR substrate binding domain RD08_RS16790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD08_RS16790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS16795 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS16810 PF00392 Bacterial regulatory proteins, gntR family RD08_RS16810 PF07729 FCD domain RD08_RS16820 PF07690 Major Facilitator Superfamily RD08_RS16830 PF02627 Carboxymuconolactone decarboxylase family RD08_RS16835 PF00578 AhpC/TSA family RD08_RS16840 PF00672 HAMP domain RD08_RS16840 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS16840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS16850 PF00072 Response regulator receiver domain RD08_RS16850 PF00486 Transcriptional regulatory protein, C terminal RD08_RS16855 PF00814 Glycoprotease family RD08_RS16860 PF03167 Uracil DNA glycosylase superfamily RD08_RS16865 PF07690 Major Facilitator Superfamily RD08_RS16870 PF06470 SMC proteins Flexible Hinge Domain RD08_RS16870 PF02463 RecF/RecN/SMC N terminal domain RD08_RS16880 PF01653 NAD-dependent DNA ligase adenylation domain RD08_RS16880 PF00533 BRCA1 C Terminus (BRCT) domain RD08_RS16880 PF03120 NAD-dependent DNA ligase OB-fold domain RD08_RS16880 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RD08_RS16880 PF12826 Helix-hairpin-helix motif RD08_RS16895 PF04279 Intracellular septation protein A RD08_RS16900 PF01641 SelR domain RD08_RS16905 PF00005 ABC transporter RD08_RS16910 PF02361 Cobalt transport protein RD08_RS16915 PF02632 BioY family RD08_RS16930 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS16930 PF00005 ABC transporter RD08_RS16935 PF01063 Amino-transferase class IV RD08_RS16950 PF02653 Branched-chain amino acid transport system / permease component RD08_RS16960 PF00005 ABC transporter RD08_RS16965 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS16965 PF00005 ABC transporter RD08_RS16970 PF00730 HhH-GPD superfamily base excision DNA repair protein RD08_RS16970 PF10576 Iron-sulfur binding domain of endonuclease III RD08_RS16970 PF00633 Helix-hairpin-helix motif RD08_RS16975 PF04060 Putative Fe-S cluster RD08_RS16985 PF00970 Oxidoreductase FAD-binding domain RD08_RS16985 PF00175 Oxidoreductase NAD-binding domain RD08_RS16990 PF00037 4Fe-4S binding domain RD08_RS16990 PF11953 Domain of unknown function (DUF3470) RD08_RS16995 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RD08_RS16995 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RD08_RS17000 PF01042 Endoribonuclease L-PSP RD08_RS17010 PF06167 Glucose-regulated metallo-peptidase M90 RD08_RS17015 PF04607 Region found in RelA / SpoT proteins RD08_RS17015 PF02824 TGS domain RD08_RS17015 PF13291 ACT domain RD08_RS17020 PF01546 Peptidase family M20/M25/M40 RD08_RS17020 PF07687 Peptidase dimerisation domain RD08_RS17025 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS17030 PF00290 Tryptophan synthase alpha chain RD08_RS17035 PF01039 Carboxyl transferase domain RD08_RS17035 PF17848 Acetyl-coA carboxylase zinc finger domain RD08_RS17040 PF09411 Lipid A 3-O-deacylase (PagL) RD08_RS17055 PF10150 Ribonuclease E/G family RD08_RS17055 PF00575 S1 RNA binding domain RD08_RS17055 PF12111 Polyribonucleotide phosphorylase C terminal RD08_RS17060 PF00849 RNA pseudouridylate synthase RD08_RS17060 PF01479 S4 domain RD08_RS17065 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS17070 PF00174 Oxidoreductase molybdopterin binding domain RD08_RS17075 PF01794 Ferric reductase like transmembrane component RD08_RS17085 PF02515 CoA-transferase family III RD08_RS17090 PF03466 LysR substrate binding domain RD08_RS17090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17100 PF02515 CoA-transferase family III RD08_RS17120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17120 PF03466 LysR substrate binding domain RD08_RS17125 PF01042 Endoribonuclease L-PSP RD08_RS17130 PF00175 Oxidoreductase NAD-binding domain RD08_RS17130 PF00042 Globin RD08_RS17130 PF00970 Oxidoreductase FAD-binding domain RD08_RS17135 PF02667 Short chain fatty acid transporter RD08_RS17140 PF00171 Aldehyde dehydrogenase family RD08_RS17145 PF00392 Bacterial regulatory proteins, gntR family RD08_RS17145 PF07729 FCD domain RD08_RS17155 PF00313 'Cold-shock' DNA-binding domain RD08_RS17160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17160 PF03466 LysR substrate binding domain RD08_RS17180 PF02803 Thiolase, C-terminal domain RD08_RS17180 PF00108 Thiolase, N-terminal domain RD08_RS17190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS17190 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS17190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS17195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17195 PF03466 LysR substrate binding domain RD08_RS17200 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17205 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS17210 PF02515 CoA-transferase family III RD08_RS17215 PF03471 Transporter associated domain RD08_RS17215 PF03741 Integral membrane protein TerC family RD08_RS17220 PF02308 MgtC family RD08_RS17225 PF03144 Elongation factor Tu domain 2 RD08_RS17225 PF14492 Elongation Factor G, domain II RD08_RS17225 PF00009 Elongation factor Tu GTP binding domain RD08_RS17225 PF00679 Elongation factor G C-terminus RD08_RS17225 PF03764 Elongation factor G, domain IV RD08_RS17230 PF00155 Aminotransferase class I and II RD08_RS17230 PF00392 Bacterial regulatory proteins, gntR family RD08_RS17240 PF00582 Universal stress protein family RD08_RS17245 PF00679 Elongation factor G C-terminus RD08_RS17245 PF00009 Elongation factor Tu GTP binding domain RD08_RS17245 PF14492 Elongation Factor G, domain II RD08_RS17245 PF03764 Elongation factor G, domain IV RD08_RS17245 PF03144 Elongation factor Tu domain 2 RD08_RS17255 PF00701 Dihydrodipicolinate synthetase family RD08_RS17260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17260 PF03466 LysR substrate binding domain RD08_RS17265 PF02515 CoA-transferase family III RD08_RS17270 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS17275 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS17275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS17280 PF01575 MaoC like domain RD08_RS17295 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD08_RS17295 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD08_RS17300 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS17305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS17305 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS17305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS17310 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17315 PF13380 CoA binding domain RD08_RS17315 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS17325 PF00676 Dehydrogenase E1 component RD08_RS17330 PF02779 Transketolase, pyrimidine binding domain RD08_RS17330 PF02780 Transketolase, C-terminal domain RD08_RS17335 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS17340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD08_RS17340 PF00364 Biotin-requiring enzyme RD08_RS17340 PF02817 e3 binding domain RD08_RS17345 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS17345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS17345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS17350 PF13193 AMP-binding enzyme C-terminal domain RD08_RS17350 PF00501 AMP-binding enzyme RD08_RS17360 PF13458 Periplasmic binding protein RD08_RS17365 PF02653 Branched-chain amino acid transport system / permease component RD08_RS17370 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS17370 PF00005 ABC transporter RD08_RS17375 PF00005 ABC transporter RD08_RS17380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS17380 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS17395 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17410 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17420 PF00899 ThiF family RD08_RS17425 PF13180 PDZ domain RD08_RS17425 PF03572 Peptidase family S41 RD08_RS17430 PF01551 Peptidase family M23 RD08_RS17435 PF00300 Histidine phosphatase superfamily (branch 1) RD08_RS17440 PF17773 UPF0176 acylphosphatase like domain RD08_RS17440 PF12368 Rhodanase C-terminal RD08_RS17440 PF00581 Rhodanese-like domain RD08_RS17445 PF00462 Glutaredoxin RD08_RS17450 PF02556 Preprotein translocase subunit SecB RD08_RS17455 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RD08_RS17455 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RD08_RS17460 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17465 PF00588 SpoU rRNA Methylase family RD08_RS17475 PF08241 Methyltransferase domain RD08_RS17480 PF04107 Glutamate-cysteine ligase family 2(GCS2) RD08_RS17485 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD08_RS17495 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS17500 PF00005 ABC transporter RD08_RS17510 PF01799 [2Fe-2S] binding domain RD08_RS17510 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS17515 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD08_RS17515 PF00941 FAD binding domain in molybdopterin dehydrogenase RD08_RS17520 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD08_RS17520 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD08_RS17525 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS17530 PF00355 Rieske [2Fe-2S] domain RD08_RS17535 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS17535 PF14759 Reductase C-terminal RD08_RS17540 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD08_RS17540 PF00355 Rieske [2Fe-2S] domain RD08_RS17550 PF00857 Isochorismatase family RD08_RS17560 PF00561 alpha/beta hydrolase fold RD08_RS17565 PF17645 Arylmalonate decarboxylase RD08_RS17575 PF12804 MobA-like NTP transferase domain RD08_RS17585 PF01047 MarR family RD08_RS17590 PF02386 Cation transport protein RD08_RS17595 PF02254 TrkA-N domain RD08_RS17595 PF02080 TrkA-C domain RD08_RS17600 PF00072 Response regulator receiver domain RD08_RS17600 PF00158 Sigma-54 interaction domain RD08_RS17600 PF02954 Bacterial regulatory protein, Fis family RD08_RS17605 PF00672 HAMP domain RD08_RS17605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS17605 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS17605 PF00989 PAS fold RD08_RS17615 PF01189 16S rRNA methyltransferase RsmB/F RD08_RS17615 PF01029 NusB family RD08_RS17625 PF01958 Domain of unknown function DUF108 RD08_RS17625 PF03447 Homoserine dehydrogenase, NAD binding domain RD08_RS17640 PF01810 LysE type translocator RD08_RS17645 PF03466 LysR substrate binding domain RD08_RS17645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17655 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17660 PF01168 Alanine racemase, N-terminal domain RD08_RS17665 PF00155 Aminotransferase class I and II RD08_RS17670 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS17680 PF00682 HMGL-like RD08_RS17685 PF02481 DNA recombination-mediator protein A RD08_RS17685 PF17782 DprA winged helix domain RD08_RS17690 PF01037 Lrp/AsnC ligand binding domain RD08_RS17695 PF00266 Aminotransferase class-V RD08_RS17700 PF01327 Polypeptide deformylase RD08_RS17710 PF02911 Formyl transferase, C-terminal domain RD08_RS17710 PF00551 Formyl transferase RD08_RS17720 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS17730 PF03641 Possible lysine decarboxylase RD08_RS17740 PF00919 Uncharacterized protein family UPF0004 RD08_RS17740 PF04055 Radical SAM superfamily RD08_RS17740 PF18693 TRAM domain RD08_RS17745 PF01361 Tautomerase enzyme RD08_RS17750 PF01266 FAD dependent oxidoreductase RD08_RS17755 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17760 PF07729 FCD domain RD08_RS17760 PF00392 Bacterial regulatory proteins, gntR family RD08_RS17770 PF00202 Aminotransferase class-III RD08_RS17775 PF00491 Arginase family RD08_RS17785 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17790 PF02627 Carboxymuconolactone decarboxylase family RD08_RS17795 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS17800 PF01614 Bacterial transcriptional regulator RD08_RS17800 PF09339 IclR helix-turn-helix domain RD08_RS17805 PF13193 AMP-binding enzyme C-terminal domain RD08_RS17805 PF00501 AMP-binding enzyme RD08_RS17810 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17820 PF12951 Passenger-associated-transport-repeat RD08_RS17820 PF12951 Passenger-associated-transport-repeat RD08_RS17840 PF03466 LysR substrate binding domain RD08_RS17840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17850 PF01168 Alanine racemase, N-terminal domain RD08_RS17850 PF14031 Putative serine dehydratase domain RD08_RS17855 PF07411 Domain of unknown function (DUF1508) RD08_RS17860 PF01145 SPFH domain / Band 7 family RD08_RS17870 PF01042 Endoribonuclease L-PSP RD08_RS17915 PF03837 RecT family RD08_RS17950 PF00589 Phage integrase family RD08_RS17955 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS17955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS17970 PF03466 LysR substrate binding domain RD08_RS17970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17975 PF02525 Flavodoxin-like fold RD08_RS17985 PF02096 60Kd inner membrane protein RD08_RS17985 PF14849 YidC periplasmic domain RD08_RS17990 PF01809 Putative membrane protein insertion efficiency factor RD08_RS17995 PF00825 Ribonuclease P RD08_RS18000 PF00468 Ribosomal protein L34 RD08_RS18005 PF08299 Bacterial dnaA protein helix-turn-helix RD08_RS18005 PF00308 Bacterial dnaA protein RD08_RS18005 PF11638 DnaA N-terminal domain RD08_RS18010 PF02768 DNA polymerase III beta subunit, C-terminal domain RD08_RS18010 PF02767 DNA polymerase III beta subunit, central domain RD08_RS18010 PF00712 DNA polymerase III beta subunit, N-terminal domain RD08_RS18015 PF00986 DNA gyrase B subunit, carboxyl terminus RD08_RS18015 PF18053 DNA gyrase B subunit insert domain RD08_RS18015 PF00204 DNA gyrase B RD08_RS18015 PF01751 Toprim domain RD08_RS18015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS18020 PF01614 Bacterial transcriptional regulator RD08_RS18020 PF09339 IclR helix-turn-helix domain RD08_RS18025 PF01425 Amidase RD08_RS18030 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18040 PF01070 FMN-dependent dehydrogenase RD08_RS18060 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS18060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS18060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS18065 PF00376 MerR family regulatory protein RD08_RS18065 PF09278 MerR, DNA binding RD08_RS18080 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS18080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS18080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS18090 PF02803 Thiolase, C-terminal domain RD08_RS18090 PF00108 Thiolase, N-terminal domain RD08_RS18095 PF01039 Carboxyl transferase domain RD08_RS18100 PF00289 Biotin carboxylase, N-terminal domain RD08_RS18100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS18100 PF02785 Biotin carboxylase C-terminal domain RD08_RS18100 PF00364 Biotin-requiring enzyme RD08_RS18110 PF00202 Aminotransferase class-III RD08_RS18115 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18120 PF01168 Alanine racemase, N-terminal domain RD08_RS18120 PF14031 Putative serine dehydratase domain RD08_RS18125 PF16868 NMT1-like family RD08_RS18135 PF07715 TonB-dependent Receptor Plug Domain RD08_RS18135 PF00593 TonB dependent receptor RD08_RS18140 PF04361 Protein of unknown function (DUF494) RD08_RS18155 PF01751 Toprim domain RD08_RS18155 PF01131 DNA topoisomerase RD08_RS18165 PF00005 ABC transporter RD08_RS18170 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS18180 PF00171 Aldehyde dehydrogenase family RD08_RS18190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS18190 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS18190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS18195 PF01037 Lrp/AsnC ligand binding domain RD08_RS18200 PF01062 Bestrophin, RFP-TM, chloride channel RD08_RS18210 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD08_RS18225 PF02310 B12 binding domain RD08_RS18225 PF02607 B12 binding domain RD08_RS18225 PF02965 Vitamin B12 dependent methionine synthase, activation domain RD08_RS18225 PF00809 Pterin binding enzyme RD08_RS18225 PF02574 Homocysteine S-methyltransferase RD08_RS18230 PF00593 TonB dependent receptor RD08_RS18230 PF07715 TonB-dependent Receptor Plug Domain RD08_RS18235 PF01497 Periplasmic binding protein RD08_RS18240 PF05690 Thiazole biosynthesis protein ThiG RD08_RS18245 PF08543 Phosphomethylpyrimidine kinase RD08_RS18260 PF02321 Outer membrane efflux protein RD08_RS18265 PF01467 Cytidylyltransferase-like RD08_RS18275 PF01594 AI-2E family transporter RD08_RS18285 PF02254 TrkA-N domain RD08_RS18285 PF07885 Ion channel RD08_RS18295 PF00164 Ribosomal protein S12/S23 RD08_RS18300 PF00177 Ribosomal protein S7p/S5e RD08_RS18305 PF00009 Elongation factor Tu GTP binding domain RD08_RS18305 PF03144 Elongation factor Tu domain 2 RD08_RS18305 PF03764 Elongation factor G, domain IV RD08_RS18305 PF00679 Elongation factor G C-terminus RD08_RS18305 PF14492 Elongation Factor G, domain II RD08_RS18310 PF00009 Elongation factor Tu GTP binding domain RD08_RS18310 PF03144 Elongation factor Tu domain 2 RD08_RS18310 PF03143 Elongation factor Tu C-terminal domain RD08_RS18315 PF00338 Ribosomal protein S10p/S20e RD08_RS18320 PF00297 Ribosomal protein L3 RD08_RS18325 PF00573 Ribosomal protein L4/L1 family RD08_RS18330 PF00276 Ribosomal protein L23 RD08_RS18335 PF00181 Ribosomal Proteins L2, RNA binding domain RD08_RS18335 PF03947 Ribosomal Proteins L2, C-terminal domain RD08_RS18340 PF00203 Ribosomal protein S19 RD08_RS18345 PF00237 Ribosomal protein L22p/L17e RD08_RS18350 PF07650 KH domain RD08_RS18350 PF00189 Ribosomal protein S3, C-terminal domain RD08_RS18355 PF00252 Ribosomal protein L16p/L10e RD08_RS18360 PF00831 Ribosomal L29 protein RD08_RS18365 PF00366 Ribosomal protein S17 RD08_RS18375 PF00171 Aldehyde dehydrogenase family RD08_RS18385 PF00238 Ribosomal protein L14p/L23e RD08_RS18390 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RD08_RS18395 PF00281 Ribosomal protein L5 RD08_RS18395 PF00673 ribosomal L5P family C-terminus RD08_RS18400 PF00253 Ribosomal protein S14p/S29e RD08_RS18405 PF00410 Ribosomal protein S8 RD08_RS18410 PF00347 Ribosomal protein L6 RD08_RS18415 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RD08_RS18420 PF00333 Ribosomal protein S5, N-terminal domain RD08_RS18420 PF03719 Ribosomal protein S5, C-terminal domain RD08_RS18425 PF00327 Ribosomal protein L30p/L7e RD08_RS18430 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RD08_RS18435 PF00344 SecY translocase RD08_RS18440 PF01176 Translation initiation factor 1A / IF-1 RD08_RS18445 PF00444 Ribosomal protein L36 RD08_RS18450 PF00416 Ribosomal protein S13/S18 RD08_RS18455 PF00411 Ribosomal protein S11 RD08_RS18460 PF00163 Ribosomal protein S4/S9 N-terminal domain RD08_RS18460 PF01479 S4 domain RD08_RS18465 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RD08_RS18465 PF01000 RNA polymerase Rpb3/RpoA insert domain RD08_RS18465 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RD08_RS18470 PF01196 Ribosomal protein L17 RD08_RS18480 PF03091 CutA1 divalent ion tolerance protein RD08_RS18485 PF02683 Cytochrome C biogenesis protein transmembrane region RD08_RS18485 PF11412 Disulphide bond corrector protein DsbC RD08_RS18490 PF00892 EamA-like transporter family RD08_RS18495 PF00490 Delta-aminolevulinic acid dehydratase RD08_RS18500 PF01926 50S ribosome-binding GTPase RD08_RS18505 PF00034 Cytochrome c RD08_RS18510 PF05140 ResB-like family RD08_RS18515 PF01578 Cytochrome C assembly protein RD08_RS18520 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD08_RS18520 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RD08_RS18525 PF01491 Frataxin-like domain RD08_RS18530 PF00912 Transglycosylase RD08_RS18530 PF17092 Penicillin-binding protein OB-like domain RD08_RS18530 PF00905 Penicillin binding protein transpeptidase domain RD08_RS18535 PF01202 Shikimate kinase RD08_RS18540 PF01761 3-dehydroquinate synthase RD08_RS18545 PF13286 Phosphohydrolase-associated domain RD08_RS18545 PF01966 HD domain RD08_RS18550 PF00043 Glutathione S-transferase, C-terminal domain RD08_RS18550 PF13417 Glutathione S-transferase, N-terminal domain RD08_RS18555 PF17755 UvrA DNA-binding domain RD08_RS18555 PF17760 UvrA interaction domain RD08_RS18560 PF07690 Major Facilitator Superfamily RD08_RS18565 PF00436 Single-strand binding protein family RD08_RS18570 PF00593 TonB dependent receptor RD08_RS18570 PF07715 TonB-dependent Receptor Plug Domain RD08_RS18580 PF03328 HpcH/HpaI aldolase/citrate lyase family RD08_RS18590 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18600 PF03466 LysR substrate binding domain RD08_RS18600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS18605 PF01979 Amidohydrolase family RD08_RS18610 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18615 PF13439 Glycosyltransferase Family 4 RD08_RS18615 PF00534 Glycosyl transferases group 1 RD08_RS18625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS18625 PF03466 LysR substrate binding domain RD08_RS18635 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS18640 PF00005 ABC transporter RD08_RS18660 PF01274 Malate synthase RD08_RS18665 PF07729 FCD domain RD08_RS18665 PF00392 Bacterial regulatory proteins, gntR family RD08_RS18680 PF01040 UbiA prenyltransferase family RD08_RS18685 PF00155 Aminotransferase class I and II RD08_RS18690 PF13185 GAF domain RD08_RS18695 PF00701 Dihydrodipicolinate synthetase family RD08_RS18705 PF04972 BON domain RD08_RS18705 PF01476 LysM domain RD08_RS18710 PF05690 Thiazole biosynthesis protein ThiG RD08_RS18710 PF02597 ThiS family RD08_RS18715 PF00561 alpha/beta hydrolase fold RD08_RS18720 PF02390 Putative methyltransferase RD08_RS18735 PF00682 HMGL-like RD08_RS18740 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18755 PF00392 Bacterial regulatory proteins, gntR family RD08_RS18755 PF07702 UTRA domain RD08_RS18760 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18770 PF00392 Bacterial regulatory proteins, gntR family RD08_RS18770 PF07702 UTRA domain RD08_RS18775 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS18785 PF00005 ABC transporter RD08_RS18790 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS18795 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18800 PF08659 KR domain RD08_RS18800 PF14765 Polyketide synthase dehydratase RD08_RS18800 PF00550 Phosphopantetheine attachment site RD08_RS18800 PF02801 Beta-ketoacyl synthase, C-terminal domain RD08_RS18800 PF00109 Beta-ketoacyl synthase, N-terminal domain RD08_RS18800 PF16197 Ketoacyl-synthetase C-terminal extension RD08_RS18800 PF00698 Acyl transferase domain RD08_RS18800 PF08990 Erythronolide synthase docking RD08_RS18800 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS18805 PF02515 CoA-transferase family III RD08_RS18810 PF00440 Bacterial regulatory proteins, tetR family RD08_RS18815 PF09297 NADH pyrophosphatase zinc ribbon domain RD08_RS18815 PF00293 NUDIX domain RD08_RS18820 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS18820 PF00175 Oxidoreductase NAD-binding domain RD08_RS18820 PF00970 Oxidoreductase FAD-binding domain RD08_RS18825 PF01425 Amidase RD08_RS18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS18835 PF03466 LysR substrate binding domain RD08_RS18840 PF13458 Periplasmic binding protein RD08_RS18850 PF00005 ABC transporter RD08_RS18860 PF02653 Branched-chain amino acid transport system / permease component RD08_RS18870 PF00355 Rieske [2Fe-2S] domain RD08_RS18885 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RD08_RS18885 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RD08_RS18900 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD08_RS18900 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD08_RS18900 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD08_RS18905 PF07690 Major Facilitator Superfamily RD08_RS18910 PF14602 Hexapeptide repeat of succinyl-transferase RD08_RS18910 PF12804 MobA-like NTP transferase domain RD08_RS18910 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS18930 PF02630 SCO1/SenC RD08_RS18935 PF01040 UbiA prenyltransferase family RD08_RS18940 PF02628 Cytochrome oxidase assembly protein RD08_RS18960 PF00510 Cytochrome c oxidase subunit III RD08_RS18975 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD08_RS18980 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RD08_RS18980 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD08_RS18990 PF00999 Sodium/hydrogen exchanger family RD08_RS18995 PF00149 Calcineurin-like phosphoesterase RD08_RS19000 PF00140 Sigma-70 factor, region 1.2 RD08_RS19000 PF04542 Sigma-70 region 2 RD08_RS19000 PF04545 Sigma-70, region 4 RD08_RS19010 PF00756 Putative esterase RD08_RS19015 PF00107 Zinc-binding dehydrogenase RD08_RS19015 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS19025 PF00310 Glutamine amidotransferases class-II RD08_RS19025 PF04898 Glutamate synthase central domain RD08_RS19025 PF01645 Conserved region in glutamate synthase RD08_RS19025 PF01493 GXGXG motif RD08_RS19030 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RD08_RS19030 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS19035 PF03922 OmpW family RD08_RS19040 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19045 PF00005 ABC transporter RD08_RS19050 PF02405 Permease MlaE RD08_RS19055 PF02470 MlaD protein RD08_RS19060 PF04333 MlaA lipoprotein RD08_RS19070 PF00005 ABC transporter RD08_RS19075 PF01061 ABC-2 type transporter RD08_RS19085 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD08_RS19090 PF01634 ATP phosphoribosyltransferase RD08_RS19095 PF00815 Histidinol dehydrogenase RD08_RS19100 PF00155 Aminotransferase class I and II RD08_RS19105 PF00475 Imidazoleglycerol-phosphate dehydratase RD08_RS19110 PF00117 Glutamine amidotransferase class-I RD08_RS19115 PF00977 Histidine biosynthesis protein RD08_RS19120 PF00977 Histidine biosynthesis protein RD08_RS19125 PF01502 Phosphoribosyl-AMP cyclohydrolase RD08_RS19130 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RD08_RS19135 PF01230 HIT domain RD08_RS19140 PF02416 mttA/Hcf106 family RD08_RS19145 PF02416 mttA/Hcf106 family RD08_RS19150 PF00902 Sec-independent protein translocase protein (TatC) RD08_RS19160 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19165 PF02917 Pertussis toxin, subunit 1 RD08_RS19170 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD08_RS19170 PF03440 Aerolysin/Pertussis toxin (APT) domain RD08_RS19175 PF09275 Pertussis toxin S4 subunit RD08_RS19180 PF09276 Pertussis toxin S5 subunit RD08_RS19185 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD08_RS19185 PF03440 Aerolysin/Pertussis toxin (APT) domain RD08_RS19190 PF04956 TrbC/VIRB2 family RD08_RS19195 PF05101 Type IV secretory pathway, VirB3-like protein RD08_RS19200 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RD08_RS19205 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RD08_RS19215 PF04335 VirB8 protein RD08_RS19220 PF03524 Conjugal transfer protein RD08_RS19225 PF03743 Bacterial conjugation TrbI-like protein RD08_RS19230 PF00437 Type II/IV secretion system protein RD08_RS19240 PF00892 EamA-like transporter family RD08_RS19260 PF12631 MnmE helical domain RD08_RS19260 PF01926 50S ribosome-binding GTPase RD08_RS19260 PF10396 GTP-binding protein TrmE N-terminus RD08_RS19265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS19270 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19275 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19275 PF12911 N-terminal TM domain of oligopeptide transport permease C RD08_RS19280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS19280 PF00005 ABC transporter RD08_RS19290 PF01960 ArgJ family RD08_RS19300 PF00293 NUDIX domain RD08_RS19320 PF02321 Outer membrane efflux protein RD08_RS19325 PF00873 AcrB/AcrD/AcrF family RD08_RS19330 PF00873 AcrB/AcrD/AcrF family RD08_RS19335 PF13533 Biotin-lipoyl like RD08_RS19340 PF07072 Cell division protein RD08_RS19345 PF01121 Dephospho-CoA kinase RD08_RS19350 PF01478 Type IV leader peptidase family RD08_RS19350 PF06750 Bacterial Peptidase A24 N-terminal domain RD08_RS19365 PF02569 Pantoate-beta-alanine ligase RD08_RS19370 PF02616 Segregation and condensation protein ScpA RD08_RS19380 PF07690 Major Facilitator Superfamily RD08_RS19385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RD08_RS19385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RD08_RS19395 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19400 PF00005 ABC transporter RD08_RS19405 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19410 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19415 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS19420 PF00005 ABC transporter RD08_RS19425 PF18075 FtsX extracellular domain RD08_RS19430 PF03975 CheD chemotactic sensory transduction RD08_RS19440 PF00730 HhH-GPD superfamily base excision DNA repair protein RD08_RS19440 PF10576 Iron-sulfur binding domain of endonuclease III RD08_RS19440 PF14815 NUDIX domain RD08_RS19440 PF00633 Helix-hairpin-helix motif RD08_RS19450 PF08241 Methyltransferase domain RD08_RS19460 PF02515 CoA-transferase family III RD08_RS19465 PF02515 CoA-transferase family III RD08_RS19475 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19480 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS19485 PF00881 Nitroreductase family RD08_RS19495 PF00682 HMGL-like RD08_RS19500 PF00378 Enoyl-CoA hydratase/isomerase RD08_RS19505 PF02515 CoA-transferase family III RD08_RS19510 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19520 PF06628 Catalase-related immune-responsive RD08_RS19520 PF00199 Catalase RD08_RS19525 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19530 PF00005 ABC transporter RD08_RS19540 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD08_RS19545 PF01546 Peptidase family M20/M25/M40 RD08_RS19545 PF07687 Peptidase dimerisation domain RD08_RS19550 PF00005 ABC transporter RD08_RS19550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS19555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS19555 PF00005 ABC transporter RD08_RS19560 PF12911 N-terminal TM domain of oligopeptide transport permease C RD08_RS19560 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19565 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS19575 PF12631 MnmE helical domain RD08_RS19575 PF01926 50S ribosome-binding GTPase RD08_RS19575 PF10396 GTP-binding protein TrmE N-terminus RD08_RS19585 PF00072 Response regulator receiver domain RD08_RS19585 PF00486 Transcriptional regulatory protein, C terminal RD08_RS19590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS19590 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS19605 PF01970 Tripartite tricarboxylate transporter TctA family RD08_RS19610 PF00155 Aminotransferase class I and II RD08_RS19615 PF00313 'Cold-shock' DNA-binding domain