RD08_RS00005 PF01134 Glucose inhibited division protein A RD08_RS00005 PF13932 GidA associated domain 3 RD08_RS00010 PF02527 rRNA small subunit methyltransferase G RD08_RS00015 PF13614 AAA domain RD08_RS00020 PF00583 Acetyltransferase (GNAT) family RD08_RS00025 PF02195 ParB-like nuclease domain RD08_RS00030 PF00710 Asparaginase RD08_RS00055 PF00009 Elongation factor Tu GTP binding domain RD08_RS00055 PF03143 Elongation factor Tu C-terminal domain RD08_RS00055 PF03144 Elongation factor Tu domain 2 RD08_RS00065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RD08_RS00070 PF00467 KOW motif RD08_RS00070 PF02357 Transcription termination factor nusG RD08_RS00075 PF00298 Ribosomal protein L11, RNA binding domain RD08_RS00075 PF03946 Ribosomal protein L11, N-terminal domain RD08_RS00080 PF00687 Ribosomal protein L1p/L10e family RD08_RS00085 PF00466 Ribosomal protein L10 RD08_RS00090 PF00542 Ribosomal protein L7/L12 C-terminal domain RD08_RS00090 PF16320 RD08_RS00090 RD08_RS00095 PF00562 RNA polymerase Rpb2, domain 6 RD08_RS00095 PF04560 RNA polymerase Rpb2, domain 7 RD08_RS00095 PF04561 RNA polymerase Rpb2, domain 2 RD08_RS00095 PF04563 RNA polymerase beta subunit RD08_RS00095 PF04565 RNA polymerase Rpb2, domain 3 RD08_RS00095 PF10385 RNA polymerase beta subunit external 1 domain RD08_RS00100 PF00623 RNA polymerase Rpb1, domain 2 RD08_RS00100 PF04983 RNA polymerase Rpb1, domain 3 RD08_RS00100 PF04997 RNA polymerase Rpb1, domain 1 RD08_RS00100 PF04998 RNA polymerase Rpb1, domain 5 RD08_RS00100 PF05000 RNA polymerase Rpb1, domain 4 RD08_RS00120 PF01476 LysM domain RD08_RS00120 PF04773 FecR protein RD08_RS00130 PF00072 Response regulator receiver domain RD08_RS00130 PF00486 Transcriptional regulatory protein, C terminal RD08_RS00135 PF00665 Integrase core domain RD08_RS00135 PF13011 RD08_RS00135 RD08_RS00140 PF02515 CoA-transferase family III RD08_RS00145 PF01796 RD08_RS00145 RD08_RS00145 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) RD08_RS00150 PF00108 Thiolase, N-terminal domain RD08_RS00155 PF01575 MaoC like domain RD08_RS00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS00160 PF03466 LysR substrate binding domain RD08_RS00165 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS00170 PF03972 MmgE/PrpD family RD08_RS00175 PF00665 Integrase core domain RD08_RS00175 PF13011 RD08_RS00175 RD08_RS00180 PF07690 Major Facilitator Superfamily RD08_RS00185 PF02091 Glycyl-tRNA synthetase alpha subunit RD08_RS00190 PF02092 RD08_RS00190 RD08_RS00190 PF05746 DALR anticodon binding domain RD08_RS00195 PF13242 HAD-hyrolase-like RD08_RS00200 PF01553 Acyltransferase RD08_RS00205 PF01863 Protein of unknown function DUF45 RD08_RS00210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD08_RS00215 PF01327 Polypeptide deformylase RD08_RS00225 PF00665 Integrase core domain RD08_RS00225 PF13011 RD08_RS00225 RD08_RS00230 PF00665 Integrase core domain RD08_RS00230 PF13011 RD08_RS00230 RD08_RS00235 PF00665 Integrase core domain RD08_RS00235 PF13011 RD08_RS00235 RD08_RS00240 PF09518 HindIII restriction endonuclease RD08_RS00250 PF01964 ThiC family RD08_RS00250 PF13667 ThiC-associated domain RD08_RS00255 PF00171 Aldehyde dehydrogenase family RD08_RS00260 PF01565 FAD binding domain RD08_RS00260 PF02913 FAD linked oxidases, C-terminal domain RD08_RS00265 PF00392 Bacterial regulatory proteins, gntR family RD08_RS00265 PF07729 FCD domain RD08_RS00270 PF00665 Integrase core domain RD08_RS00270 PF13011 RD08_RS00270 RD08_RS00280 PF13420 Acetyltransferase (GNAT) domain RD08_RS00285 PF06508 Queuosine biosynthesis protein QueC RD08_RS00290 PF00311 Phosphoenolpyruvate carboxylase RD08_RS00295 PF00082 Subtilase family RD08_RS00295 PF03797 Autotransporter beta-domain RD08_RS00295 PF12951 RD08_RS00295 RD08_RS00300 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS00300 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS00305 PF02667 RD08_RS00305 RD08_RS00310 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS00315 PF01614 Bacterial transcriptional regulator RD08_RS00315 PF09339 IclR helix-turn-helix domain RD08_RS00320 PF01144 Coenzyme A transferase RD08_RS00325 PF01144 Coenzyme A transferase RD08_RS00330 PF02426 Muconolactone delta-isomerase RD08_RS00335 PF03795 YCII-related domain RD08_RS00340 PF00561 alpha/beta hydrolase fold RD08_RS00345 PF04199 Putative cyclase RD08_RS00350 PF07769 RD08_RS00350 RD08_RS00355 PF00665 Integrase core domain RD08_RS00355 PF13011 RD08_RS00355 RD08_RS00360 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS00365 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS00370 PF02515 CoA-transferase family III RD08_RS00375 PF00392 Bacterial regulatory proteins, gntR family RD08_RS00375 PF07729 FCD domain RD08_RS00380 PF02347 Glycine cleavage system P-protein RD08_RS00385 PF01597 Glycine cleavage H-protein RD08_RS00390 PF01571 Aminomethyltransferase folate-binding domain RD08_RS00390 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD08_RS00395 PF02535 RD08_RS00395 RD08_RS00400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD08_RS00400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD08_RS00405 PF00665 Integrase core domain RD08_RS00405 PF13011 RD08_RS00405 RD08_RS00410 PF03486 HI0933-like protein RD08_RS00415 PF01276 Orn/Lys/Arg decarboxylase, major domain RD08_RS00415 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RD08_RS00415 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RD08_RS00425 PF00583 Acetyltransferase (GNAT) family RD08_RS00430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD08_RS00435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD08_RS00440 PF00692 dUTPase RD08_RS00445 PF04357 RD08_RS00445 RD08_RS00450 PF01103 Surface antigen RD08_RS00455 PF01883 Domain of unknown function DUF59 RD08_RS00455 PF10609 ParA/MinD ATPase like RD08_RS00465 PF01588 Putative tRNA binding domain RD08_RS00465 PF09334 tRNA synthetases class I (M) RD08_RS00470 PF00581 Rhodanese-like domain RD08_RS00475 PF03724 META domain RD08_RS00475 PF14302 RD08_RS00475 RD08_RS00480 PF03724 META domain RD08_RS00490 PF00665 Integrase core domain RD08_RS00490 PF13011 RD08_RS00490 RD08_RS00495 PF00210 Ferritin-like domain RD08_RS00505 PF00009 Elongation factor Tu GTP binding domain RD08_RS00505 PF03144 Elongation factor Tu domain 2 RD08_RS00505 PF16658 RD08_RS00505 RD08_RS00510 PF01810 RD08_RS00510 RD08_RS00515 PF00270 DEAD/DEAH box helicase RD08_RS00515 PF00271 Helicase conserved C-terminal domain RD08_RS00520 PF04011 LemA family RD08_RS00525 PF04536 TLP18 RD08_RS00530 PF00005 ABC transporter RD08_RS00530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS00535 PF00665 Integrase core domain RD08_RS00535 PF13011 RD08_RS00535 RD08_RS00545 PF03109 RD08_RS00545 RD08_RS00550 PF02036 SCP-2 sterol transfer family RD08_RS00555 PF04280 Tim44-like domain RD08_RS00560 PF01209 ubiE/COQ5 methyltransferase family RD08_RS00565 PF00072 Response regulator receiver domain RD08_RS00565 PF00486 Transcriptional regulatory protein, C terminal RD08_RS00570 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS00570 PF11808 RD08_RS00570 RD08_RS00575 PF00072 Response regulator receiver domain RD08_RS00575 PF00486 Transcriptional regulatory protein, C terminal RD08_RS00580 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS00580 PF00672 HAMP domain RD08_RS00580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS00585 PF04214 RD08_RS00585 RD08_RS00590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD08_RS00590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS00595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS00595 PF03466 LysR substrate binding domain RD08_RS00600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD08_RS00605 PF02682 Allophanate hydrolase subunit 1 RD08_RS00610 PF02626 Allophanate hydrolase subunit 2 RD08_RS00615 PF03746 LamB/YcsF family RD08_RS00620 PF01614 Bacterial transcriptional regulator RD08_RS00620 PF09339 IclR helix-turn-helix domain RD08_RS00625 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS00630 PF01494 FAD binding domain RD08_RS00635 PF01494 FAD binding domain RD08_RS00640 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS00645 PF07859 alpha/beta hydrolase fold RD08_RS00650 PF02515 CoA-transferase family III RD08_RS00655 PF00392 Bacterial regulatory proteins, gntR family RD08_RS00655 PF07729 FCD domain RD08_RS00660 PF01565 FAD binding domain RD08_RS00660 PF02754 RD08_RS00660 RD08_RS00660 PF02913 FAD linked oxidases, C-terminal domain RD08_RS00660 PF11880 RD08_RS00660 RD08_RS00660 PF12447 RD08_RS00660 RD08_RS00660 PF13183 4Fe-4S dicluster domain RD08_RS00670 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS00670 PF00585 C-terminal regulatory domain of Threonine dehydratase RD08_RS00675 PF13609 Gram-negative porin RD08_RS00680 PF00665 Integrase core domain RD08_RS00680 PF13011 RD08_RS00680 RD08_RS00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS00690 PF03466 LysR substrate binding domain RD08_RS00695 PF04324 BFD-like [2Fe-2S] binding domain RD08_RS00700 PF00309 RD08_RS00700 RD08_RS00700 PF04552 Sigma-54, DNA binding domain RD08_RS00700 PF04963 Sigma-54 factor, core binding domain RD08_RS00710 PF00682 HMGL-like RD08_RS00710 PF08502 LeuA allosteric (dimerisation) domain RD08_RS00715 PF01425 Amidase RD08_RS00725 PF13377 Periplasmic binding protein-like domain RD08_RS00730 PF13343 Bacterial extracellular solute-binding protein RD08_RS00740 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS00745 PF00005 ABC transporter RD08_RS00750 PF00665 Integrase core domain RD08_RS00750 PF13011 RD08_RS00750 RD08_RS00755 PF00149 Calcineurin-like phosphoesterase RD08_RS00760 PF00005 ABC transporter RD08_RS00760 PF08402 TOBE domain RD08_RS00765 PF13416 Bacterial extracellular solute-binding protein RD08_RS00770 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS00775 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS00780 PF01548 RD08_RS00780 RD08_RS00780 PF02371 RD08_RS00780 RD08_RS00790 PF08895 RD08_RS00790 RD08_RS00795 PF00750 tRNA synthetases class I (R) RD08_RS00795 PF03485 Arginyl tRNA synthetase N terminal domain RD08_RS00795 PF05746 DALR anticodon binding domain RD08_RS00805 PF00085 Thioredoxin RD08_RS00805 PF01323 DSBA-like thioredoxin domain RD08_RS00810 PF01053 Cys/Met metabolism PLP-dependent enzyme RD08_RS00820 PF00665 Integrase core domain RD08_RS00820 PF13011 RD08_RS00820 RD08_RS00825 PF16363 RD08_RS00825 RD08_RS00830 PF04321 RmlD substrate binding domain RD08_RS00835 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RD08_RS00840 PF04055 Radical SAM superfamily RD08_RS00840 PF16881 RD08_RS00840 RD08_RS00845 PF03099 Biotin/lipoate A/B protein ligase family RD08_RS00850 PF04359 Protein of unknown function (DUF493) RD08_RS00855 PF01063 Aminotransferase class IV RD08_RS00860 PF00768 D-alanyl-D-alanine carboxypeptidase RD08_RS00860 PF07943 Penicillin-binding protein 5, C-terminal domain RD08_RS00870 PF03886 Protein of unknown function (DUF330) RD08_RS00885 PF00005 ABC transporter RD08_RS00890 PF02405 RD08_RS00890 RD08_RS00895 PF02237 Biotin protein ligase C terminal domain RD08_RS00895 PF03099 Biotin/lipoate A/B protein ligase family RD08_RS00900 PF03309 Type III pantothenate kinase RD08_RS00910 PF00534 Glycosyl transferases group 1 RD08_RS00910 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RD08_RS00915 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD08_RS00920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RD08_RS00920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RD08_RS00925 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS00930 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD08_RS00935 PF02350 UDP-N-acetylglucosamine 2-epimerase RD08_RS00940 PF13579 Glycosyl transferase 4-like domain RD08_RS00940 PF13692 Glycosyl transferases group 1 RD08_RS00945 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD08_RS00950 PF02397 RD08_RS00950 RD08_RS00955 PF00534 Glycosyl transferases group 1 RD08_RS00955 PF13477 Glycosyl transferase 4-like RD08_RS00960 PF10997 RD08_RS00960 RD08_RS00970 PF02719 Polysaccharide biosynthesis protein RD08_RS00970 PF13727 CoA-binding domain RD08_RS00975 PF00665 Integrase core domain RD08_RS00975 PF13011 RD08_RS00975 RD08_RS00980 PF00665 Integrase core domain RD08_RS00980 PF13011 RD08_RS00980 RD08_RS00985 PF00448 SRP54-type protein, GTPase domain RD08_RS00985 PF02881 SRP54-type protein, helical bundle domain RD08_RS00985 PF02978 Signal peptide binding domain RD08_RS00990 PF01578 RD08_RS00990 RD08_RS01000 PF01510 N-acetylmuramoyl-L-alanine amidase RD08_RS01005 PF00043 Glutathione S-transferase, C-terminal domain RD08_RS01005 PF13417 Glutathione S-transferase, N-terminal domain RD08_RS01010 PF00183 Hsp90 protein RD08_RS01010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS01020 PF00665 Integrase core domain RD08_RS01025 PF06627 Protein of unknown function (DUF1153) RD08_RS01030 PF00665 Integrase core domain RD08_RS01030 PF13011 RD08_RS01030 RD08_RS01035 PF00866 Ring hydroxylating beta subunit RD08_RS01040 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS01050 PF06808 RD08_RS01050 RD08_RS01055 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS01055 PF00175 Oxidoreductase NAD-binding domain RD08_RS01055 PF00970 Oxidoreductase FAD-binding domain RD08_RS01060 PF00355 Rieske [2Fe-2S] domain RD08_RS01065 PF01965 DJ-1/PfpI family RD08_RS01070 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01080 PF13560 Helix-turn-helix domain RD08_RS01085 PF07804 HipA-like C-terminal domain RD08_RS01085 PF07805 HipA-like N-terminal domain RD08_RS01085 PF13657 HipA N-terminal domain RD08_RS01095 PF00665 Integrase core domain RD08_RS01095 PF13011 RD08_RS01095 RD08_RS01100 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS01105 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS01110 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS01115 PF00005 ABC transporter RD08_RS01120 PF01177 Asp/Glu/Hydantoin racemase RD08_RS01130 PF07690 Major Facilitator Superfamily RD08_RS01135 PF00665 Integrase core domain RD08_RS01135 PF13011 RD08_RS01135 RD08_RS01140 PF07021 Methionine biosynthesis protein MetW RD08_RS01145 PF00561 alpha/beta hydrolase fold RD08_RS01150 PF02615 Malate/L-lactate dehydrogenase RD08_RS01155 PF03547 RD08_RS01155 RD08_RS01160 PF00196 Bacterial regulatory proteins, luxR family RD08_RS01170 PF12146 Putative lysophospholipase RD08_RS01175 PF00665 Integrase core domain RD08_RS01175 PF13011 RD08_RS01175 RD08_RS01180 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS01190 PF02627 Carboxymuconolactone decarboxylase family RD08_RS01195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD08_RS01195 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD08_RS01200 PF00392 Bacterial regulatory proteins, gntR family RD08_RS01200 PF07729 FCD domain RD08_RS01205 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS01210 PF04290 RD08_RS01210 RD08_RS01210 PF06808 RD08_RS01210 RD08_RS01220 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01225 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RD08_RS01230 PF01743 Poly A polymerase head domain RD08_RS01230 PF12626 Polymerase A arginine-rich C-terminus RD08_RS01230 PF12627 Probable RNA and SrmB- binding site of polymerase A RD08_RS01235 PF12710 haloacid dehalogenase-like hydrolase RD08_RS01240 PF00308 Bacterial dnaA protein RD08_RS01245 PF00586 AIR synthase related protein, N-terminal domain RD08_RS01245 PF02769 AIR synthase related protein, C-terminal domain RD08_RS01250 PF01715 IPP transferase RD08_RS01255 PF01119 DNA mismatch repair protein, C-terminal domain RD08_RS01255 PF08676 MutL C terminal dimerisation domain RD08_RS01255 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS01260 PF09335 RD08_RS01260 RD08_RS01265 PF01520 N-acetylmuramoyl-L-alanine amidase RD08_RS01265 PF11741 AMIN domain RD08_RS01270 PF02367 Uncharacterised P-loop hydrolase UPF0079 RD08_RS01275 PF00206 Lyase RD08_RS01275 PF10415 Fumarase C C-terminus RD08_RS01280 PF03547 RD08_RS01280 RD08_RS01285 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS01290 PF03466 LysR substrate binding domain RD08_RS01295 PF01019 Gamma-glutamyltranspeptidase RD08_RS01300 PF02515 CoA-transferase family III RD08_RS01305 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS01315 PF00665 Integrase core domain RD08_RS01315 PF13011 RD08_RS01315 RD08_RS01320 PF00593 TonB dependent receptor RD08_RS01325 PF12802 MarR family RD08_RS01330 PF01654 RD08_RS01330 RD08_RS01335 PF02322 RD08_RS01335 RD08_RS01340 PF08173 RD08_RS01340 RD08_RS01345 PF00005 ABC transporter RD08_RS01345 PF00664 ABC transporter transmembrane region RD08_RS01350 PF00005 ABC transporter RD08_RS01350 PF00664 ABC transporter transmembrane region RD08_RS01355 PF00156 Phosphoribosyl transferase domain RD08_RS01365 PF13663 RD08_RS01365 RD08_RS01370 PF13609 Gram-negative porin RD08_RS01375 PF00665 Integrase core domain RD08_RS01375 PF13011 RD08_RS01375 RD08_RS01380 PF13986 RD08_RS01380 RD08_RS01395 PF04386 Stringent starvation protein B RD08_RS01400 PF13410 Glutathione S-transferase, C-terminal domain RD08_RS01400 PF13417 Glutathione S-transferase, N-terminal domain RD08_RS01405 PF02167 Cytochrome C1 family RD08_RS01410 PF00032 Cytochrome b(C-terminal)/b6/petD RD08_RS01410 PF00033 Cytochrome b(N-terminal)/b6/petB RD08_RS01415 PF00355 Rieske [2Fe-2S] domain RD08_RS01420 PF01741 Large-conductance mechanosensitive channel, MscL RD08_RS01425 PF01784 NIF3 (NGG1p interacting factor 3) RD08_RS01430 PF13180 PDZ domain RD08_RS01430 PF13365 Trypsin-like peptidase domain RD08_RS01435 PF00665 Integrase core domain RD08_RS01435 PF13011 RD08_RS01435 RD08_RS01440 PF04299 Putative FMN-binding domain RD08_RS01445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS01450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS01455 PF07859 alpha/beta hydrolase fold RD08_RS01460 PF02311 AraC-like ligand binding domain RD08_RS01460 PF12833 Helix-turn-helix domain RD08_RS01465 PF00682 HMGL-like RD08_RS01470 PF02311 AraC-like ligand binding domain RD08_RS01470 PF12833 Helix-turn-helix domain RD08_RS01475 PF00920 Dehydratase family RD08_RS01480 PF07690 Major Facilitator Superfamily RD08_RS01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS01485 PF03466 LysR substrate binding domain RD08_RS01495 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RD08_RS01500 PF00665 Integrase core domain RD08_RS01500 PF13011 RD08_RS01500 RD08_RS01510 PF00665 Integrase core domain RD08_RS01510 PF13011 RD08_RS01510 RD08_RS01520 PF01047 MarR family RD08_RS01525 PF07859 alpha/beta hydrolase fold RD08_RS01530 PF13458 Periplasmic binding protein RD08_RS01535 PF02653 RD08_RS01535 RD08_RS01540 PF02653 RD08_RS01540 RD08_RS01545 PF00005 ABC transporter RD08_RS01545 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS01550 PF00005 ABC transporter RD08_RS01565 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS01570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS01570 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS01570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS01575 PF00501 AMP-binding enzyme RD08_RS01575 PF13193 AMP-binding enzyme C-terminal domain RD08_RS01580 PF13279 Thioesterase-like superfamily RD08_RS01585 PF01042 Endoribonuclease L-PSP RD08_RS01590 PF03961 RD08_RS01590 RD08_RS01595 PF00202 Aminotransferase class-III RD08_RS01600 PF02581 Thiamine monophosphate synthase/TENI RD08_RS01605 PF08543 Phosphomethylpyrimidine kinase RD08_RS01610 PF00301 Rubredoxin RD08_RS01615 PF02622 Uncharacterized ACR, COG1678 RD08_RS01620 PF03652 Uncharacterised protein family (UPF0081) RD08_RS01625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD08_RS01625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD08_RS01630 PF01979 Amidohydrolase family RD08_RS01635 PF01553 Acyltransferase RD08_RS01640 PF00149 Calcineurin-like phosphoesterase RD08_RS01645 PF03739 RD08_RS01645 RD08_RS01650 PF00912 Transglycosylase RD08_RS01655 PF00665 Integrase core domain RD08_RS01655 PF13011 RD08_RS01655 RD08_RS01665 PF00501 AMP-binding enzyme RD08_RS01665 PF13193 AMP-binding enzyme C-terminal domain RD08_RS01670 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01675 PF01796 RD08_RS01675 RD08_RS01675 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) RD08_RS01685 PF12706 Beta-lactamase superfamily domain RD08_RS01690 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS01695 PF03466 LysR substrate binding domain RD08_RS01700 PF11737 RD08_RS01700 RD08_RS01705 PF11453 RD08_RS01705 RD08_RS01710 PF00990 GGDEF domain RD08_RS01715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD08_RS01720 PF13532 2OG-Fe(II) oxygenase superfamily RD08_RS01725 PF09859 RD08_RS01725 RD08_RS01730 PF04463 RD08_RS01730 RD08_RS01735 PF00005 ABC transporter RD08_RS01740 PF01032 FecCD transport family RD08_RS01745 PF01497 Periplasmic binding protein RD08_RS01750 PF05171 Haemin-degrading HemS RD08_RS01755 PF00593 TonB dependent receptor RD08_RS01755 PF07660 Secretin and TonB N terminus short domain RD08_RS01755 PF07715 TonB-dependent Receptor Plug Domain RD08_RS01760 PF04773 FecR protein RD08_RS01760 PF16220 RD08_RS01760 RD08_RS01765 PF04542 Sigma-70 region 2 RD08_RS01765 PF08281 Sigma-70, region 4 RD08_RS01775 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS01785 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS01790 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD08_RS01795 PF00665 Integrase core domain RD08_RS01795 PF13011 RD08_RS01795 RD08_RS01800 PF00392 Bacterial regulatory proteins, gntR family RD08_RS01800 PF07729 FCD domain RD08_RS01805 PF01925 RD08_RS01805 RD08_RS01815 PF14518 Iron-containing redox enzyme RD08_RS01820 PF00171 Aldehyde dehydrogenase family RD08_RS01825 PF03928 Domain of unknown function (DUF336) RD08_RS01830 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS01830 PF00175 Oxidoreductase NAD-binding domain RD08_RS01830 PF00970 Oxidoreductase FAD-binding domain RD08_RS01835 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS01840 PF10282 Lactonase, 7-bladed beta-propeller RD08_RS01845 PF00665 Integrase core domain RD08_RS01845 PF13011 RD08_RS01845 RD08_RS01850 PF00582 Universal stress protein family RD08_RS01855 PF03458 RD08_RS01855 RD08_RS01860 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD08_RS01860 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD08_RS01865 PF03372 Endonuclease/Exonuclease/phosphatase family RD08_RS01870 PF00156 Phosphoribosyl transferase domain RD08_RS01875 PF02637 GatB domain RD08_RS01875 PF02934 GatB/GatE catalytic domain RD08_RS01880 PF01425 Amidase RD08_RS01885 PF02686 Glu-tRNAGln amidotransferase C subunit RD08_RS01890 PF06723 MreB/Mbl protein RD08_RS01895 PF04085 rod shape-determining protein MreC RD08_RS01900 PF04093 RD08_RS01900 RD08_RS01905 PF00905 Penicillin binding protein transpeptidase domain RD08_RS01905 PF03717 Penicillin-binding Protein dimerisation domain RD08_RS01910 PF01098 RD08_RS01910 RD08_RS01915 PF02615 Malate/L-lactate dehydrogenase RD08_RS01920 PF00939 Sodium:sulfate symporter transmembrane region RD08_RS01925 PF00440 Bacterial regulatory proteins, tetR family RD08_RS01930 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS01935 PF00696 Amino acid kinase family RD08_RS01940 PF03180 NLPA lipoprotein RD08_RS01945 PF08534 Redoxin RD08_RS01950 PF04972 BON domain RD08_RS01955 PF13580 SIS domain RD08_RS01960 PF02021 Uncharacterised protein family UPF0102 RD08_RS01965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD08_RS01970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD08_RS01975 PF00665 Integrase core domain RD08_RS01975 PF13011 RD08_RS01975 RD08_RS01985 PF00462 Glutaredoxin RD08_RS01990 PF02515 CoA-transferase family III RD08_RS01995 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02000 PF02515 CoA-transferase family III RD08_RS02015 PF00581 Rhodanese-like domain RD08_RS02020 PF01614 Bacterial transcriptional regulator RD08_RS02020 PF09339 IclR helix-turn-helix domain RD08_RS02025 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS02030 PF00665 Integrase core domain RD08_RS02030 PF13011 RD08_RS02030 RD08_RS02035 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02040 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS02045 PF02515 CoA-transferase family III RD08_RS02050 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS02050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS02050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS02055 PF03466 LysR substrate binding domain RD08_RS02060 PF00581 Rhodanese-like domain RD08_RS02065 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02075 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02080 PF00665 Integrase core domain RD08_RS02080 PF13011 RD08_RS02080 RD08_RS02085 PF00892 EamA-like transporter family RD08_RS02090 PF01810 RD08_RS02090 RD08_RS02095 PF12146 Putative lysophospholipase RD08_RS02100 PF05232 RD08_RS02100 RD08_RS02105 PF04794 YdjC-like protein RD08_RS02110 PF13231 RD08_RS02110 RD08_RS02115 PF00535 Glycosyl transferase family 2 RD08_RS02120 PF00583 Acetyltransferase (GNAT) family RD08_RS02125 PF00665 Integrase core domain RD08_RS02125 PF13011 RD08_RS02125 RD08_RS02130 PF03616 RD08_RS02130 RD08_RS02135 PF16868 RD08_RS02135 RD08_RS02140 PF02667 RD08_RS02140 RD08_RS02155 PF00929 Exonuclease RD08_RS02160 PF00873 AcrB/AcrD/AcrF family RD08_RS02165 PF00665 Integrase core domain RD08_RS02165 PF13011 RD08_RS02165 RD08_RS02170 PF01989 Protein of unknown function DUF126 RD08_RS02175 PF04412 RD08_RS02175 RD08_RS02180 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS02185 PF03466 LysR substrate binding domain RD08_RS02190 PF01565 FAD binding domain RD08_RS02190 PF09330 D-lactate dehydrogenase, membrane binding RD08_RS02195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS02195 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS02195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS02200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS02200 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS02200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS02205 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02210 PF01546 Peptidase family M20/M25/M40 RD08_RS02210 PF07687 Peptidase dimerisation domain RD08_RS02215 PF06267 Family of unknown function (DUF1028) RD08_RS02220 PF01042 Endoribonuclease L-PSP RD08_RS02225 PF13738 Pyridine nucleotide-disulphide oxidoreductase RD08_RS02230 PF00107 Zinc-binding dehydrogenase RD08_RS02235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS02235 PF03466 LysR substrate binding domain RD08_RS02240 PF13380 CoA binding domain RD08_RS02240 PF13549 ATP-grasp domain RD08_RS02240 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS02245 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS02250 PF09084 NMT1/THI5 like RD08_RS02255 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02260 PF01370 NAD dependent epimerase/dehydratase family RD08_RS02265 PF01380 SIS domain RD08_RS02265 PF13522 Glutamine amidotransferase domain RD08_RS02270 PF01037 AsnC family RD08_RS02270 PF13412 Winged helix-turn-helix DNA-binding RD08_RS02275 PF00108 Thiolase, N-terminal domain RD08_RS02275 PF02803 Thiolase, C-terminal domain RD08_RS02280 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS02280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS02280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS02285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS02285 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS02290 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02295 PF13380 CoA binding domain RD08_RS02295 PF13549 ATP-grasp domain RD08_RS02295 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS02300 PF00285 Citrate synthase RD08_RS02305 PF01614 Bacterial transcriptional regulator RD08_RS02305 PF09339 IclR helix-turn-helix domain RD08_RS02310 PF00384 Molybdopterin oxidoreductase RD08_RS02310 PF01568 Molydopterin dinucleotide binding domain RD08_RS02315 PF00665 Integrase core domain RD08_RS02315 PF13011 RD08_RS02315 RD08_RS02320 PF00665 Integrase core domain RD08_RS02320 PF13011 RD08_RS02320 RD08_RS02330 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RD08_RS02330 PF01488 Shikimate / quinate 5-dehydrogenase RD08_RS02330 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RD08_RS02335 PF00472 RF-1 domain RD08_RS02335 PF03462 PCRF domain RD08_RS02340 PF05175 Methyltransferase small domain RD08_RS02345 PF00462 Glutaredoxin RD08_RS02350 PF02441 Flavoprotein RD08_RS02355 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02360 PF09084 NMT1/THI5 like RD08_RS02365 PF00941 FAD binding domain in molybdopterin dehydrogenase RD08_RS02365 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD08_RS02370 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS02370 PF01799 [2Fe-2S] binding domain RD08_RS02375 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD08_RS02375 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD08_RS02380 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) RD08_RS02390 PF00665 Integrase core domain RD08_RS02390 PF13011 RD08_RS02390 RD08_RS02395 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel RD08_RS02395 PF05036 Sporulation related domain RD08_RS02400 PF03668 RD08_RS02400 RD08_RS02410 PF00034 Cytochrome c RD08_RS02410 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD08_RS02415 PF02603 HPr Serine kinase N terminus RD08_RS02415 PF07475 HPr Serine kinase C-terminal domain RD08_RS02420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RD08_RS02425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RD08_RS02430 PF00005 ABC transporter RD08_RS02430 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS02435 PF03968 OstA-like protein RD08_RS02440 PF06835 Lipopolysaccharide-assembly, LptC-related RD08_RS02445 PF08282 haloacid dehalogenase-like hydrolase RD08_RS02450 PF00571 CBS domain RD08_RS02450 PF01380 SIS domain RD08_RS02455 PF01370 NAD dependent epimerase/dehydratase family RD08_RS02455 PF02222 ATP-grasp domain RD08_RS02460 PF00593 TonB dependent receptor RD08_RS02460 PF07715 TonB-dependent Receptor Plug Domain RD08_RS02465 PF00665 Integrase core domain RD08_RS02465 PF13011 RD08_RS02465 RD08_RS02470 PF00732 GMC oxidoreductase RD08_RS02470 PF05199 GMC oxidoreductase RD08_RS02475 PF07399 RD08_RS02475 RD08_RS02480 PF09723 RD08_RS02480 RD08_RS02485 PF04367 RD08_RS02485 RD08_RS02490 PF00152 tRNA synthetases class II (D, K and N) RD08_RS02490 PF01336 OB-fold nucleic acid binding domain RD08_RS02490 PF02938 GAD domain RD08_RS02495 PF03372 Endonuclease/Exonuclease/phosphatase family RD08_RS02500 PF13091 PLD-like domain RD08_RS02505 PF00892 EamA-like transporter family RD08_RS02515 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) RD08_RS02520 PF00665 Integrase core domain RD08_RS02520 PF13011 RD08_RS02520 RD08_RS02525 PF13458 Periplasmic binding protein RD08_RS02530 PF01425 Amidase RD08_RS02535 PF05995 Cysteine dioxygenase type I RD08_RS02540 PF01614 Bacterial transcriptional regulator RD08_RS02540 PF09339 IclR helix-turn-helix domain RD08_RS02555 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS02560 PF05275 RD08_RS02560 RD08_RS02565 PF00394 Multicopper oxidase RD08_RS02565 PF07731 Multicopper oxidase RD08_RS02565 PF07732 Multicopper oxidase RD08_RS02570 PF00127 Copper binding proteins, plastocyanin/azurin family RD08_RS02575 PF00665 Integrase core domain RD08_RS02575 PF13011 RD08_RS02575 RD08_RS02580 PF00665 Integrase core domain RD08_RS02580 PF13011 RD08_RS02580 RD08_RS02590 PF00665 Integrase core domain RD08_RS02590 PF13011 RD08_RS02590 RD08_RS02595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS02595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS02600 PF02515 CoA-transferase family III RD08_RS02605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS02605 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS02605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS02610 PF00440 Bacterial regulatory proteins, tetR family RD08_RS02615 PF03060 Nitronate monooxygenase RD08_RS02620 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS02625 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS02630 PF01256 Carbohydrate kinase RD08_RS02645 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD08_RS02650 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS02655 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS02660 PF00005 ABC transporter RD08_RS02660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS02670 PF01546 Peptidase family M20/M25/M40 RD08_RS02670 PF07687 Peptidase dimerisation domain RD08_RS02675 PF00665 Integrase core domain RD08_RS02675 PF13011 RD08_RS02675 RD08_RS02680 PF00580 UvrD/REP helicase N-terminal domain RD08_RS02680 PF13361 UvrD-like helicase C-terminal domain RD08_RS02685 PF00270 DEAD/DEAH box helicase RD08_RS02685 PF00271 Helicase conserved C-terminal domain RD08_RS02690 PF01208 Uroporphyrinogen decarboxylase (URO-D) RD08_RS02695 PF02954 Bacterial regulatory protein, Fis family RD08_RS02700 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RD08_RS02705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD08_RS02705 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD08_RS02710 PF00231 ATP synthase RD08_RS02715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD08_RS02715 PF00306 ATP synthase alpha/beta chain, C terminal domain RD08_RS02715 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD08_RS02720 PF00213 ATP synthase delta (OSCP) subunit RD08_RS02725 PF00430 ATP synthase B/B' CF(0) RD08_RS02730 PF00137 ATP synthase subunit C RD08_RS02735 PF00119 ATP synthase A chain RD08_RS02740 PF03899 RD08_RS02740 RD08_RS02745 PF06742 Protein of unknown function (DUF1214) RD08_RS02750 PF00665 Integrase core domain RD08_RS02750 PF13011 RD08_RS02750 RD08_RS02755 PF06863 Protein of unknown function (DUF1254) RD08_RS02760 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS02765 PF05299 M61 glycyl aminopeptidase RD08_RS02765 PF13180 PDZ domain RD08_RS02770 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS02775 PF02152 Dihydroneopterin aldolase RD08_RS02780 PF01171 PP-loop family RD08_RS02785 PF00665 Integrase core domain RD08_RS02785 PF13011 RD08_RS02785 RD08_RS02790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD08_RS02790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS02795 PF10411 Disulfide bond isomerase protein N-terminus RD08_RS02795 PF13098 Thioredoxin-like domain RD08_RS02800 PF01494 FAD binding domain RD08_RS02805 PF03562 MltA specific insert domain RD08_RS02805 PF06725 3D domain RD08_RS02810 PF04379 Protein of unknown function (DUF525) RD08_RS02815 PF00834 Ribulose-phosphate 3 epimerase family RD08_RS02820 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS02825 PF00425 chorismate binding enzyme RD08_RS02825 PF04715 Anthranilate synthase component I, N terminal region RD08_RS02830 PF00117 Glutamine amidotransferase class-I RD08_RS02835 PF00591 Glycosyl transferase family, a/b domain RD08_RS02835 PF02885 Glycosyl transferase family, helical bundle domain RD08_RS02840 PF00218 Indole-3-glycerol phosphate synthase RD08_RS02845 PF00665 Integrase core domain RD08_RS02845 PF13011 RD08_RS02845 RD08_RS02855 PF06742 Protein of unknown function (DUF1214) RD08_RS02855 PF06863 Protein of unknown function (DUF1254) RD08_RS02860 PF00665 Integrase core domain RD08_RS02860 PF13011 RD08_RS02860 RD08_RS02865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS02865 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS02870 PF03466 LysR substrate binding domain RD08_RS02875 PF00551 Formyl transferase RD08_RS02875 PF01842 ACT domain RD08_RS02880 PF01266 FAD dependent oxidoreductase RD08_RS02885 PF01613 Flavin reductase like domain RD08_RS02890 PF01243 Pyridoxamine 5'-phosphate oxidase RD08_RS02890 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RD08_RS02895 PF04752 RD08_RS02895 RD08_RS02900 PF07690 Major Facilitator Superfamily RD08_RS02905 PF00899 ThiF family RD08_RS02910 PF00392 Bacterial regulatory proteins, gntR family RD08_RS02910 PF07702 UTRA domain RD08_RS02915 PF00501 AMP-binding enzyme RD08_RS02915 PF13193 AMP-binding enzyme C-terminal domain RD08_RS02920 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS02925 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS02930 PF01548 RD08_RS02930 RD08_RS02930 PF02371 RD08_RS02930 RD08_RS02935 PF01063 Aminotransferase class IV RD08_RS02940 PF00425 chorismate binding enzyme RD08_RS02945 PF00005 ABC transporter RD08_RS02955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS02955 PF03466 LysR substrate binding domain RD08_RS02960 PF00535 Glycosyl transferase family 2 RD08_RS02965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS02970 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS02975 PF00892 EamA-like transporter family RD08_RS02980 PF00005 ABC transporter RD08_RS02985 PF00857 Isochorismatase family RD08_RS02990 PF05433 RD08_RS02990 RD08_RS02995 PF01548 RD08_RS02995 RD08_RS02995 PF02371 RD08_RS02995 RD08_RS03000 PF03776 Septum formation topological specificity factor MinE RD08_RS03005 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RD08_RS03010 PF03775 Septum formation inhibitor MinC, C-terminal domain RD08_RS03010 PF05209 Septum formation inhibitor MinC, N-terminal domain RD08_RS03015 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD08_RS03015 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RD08_RS03020 PF01654 RD08_RS03020 RD08_RS03025 PF02322 RD08_RS03025 RD08_RS03030 PF00672 HAMP domain RD08_RS03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS03035 PF00072 Response regulator receiver domain RD08_RS03035 PF00486 Transcriptional regulatory protein, C terminal RD08_RS03045 PF00665 Integrase core domain RD08_RS03045 PF13011 RD08_RS03045 RD08_RS03050 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS03055 PF04391 RD08_RS03055 RD08_RS03060 PF02566 OsmC-like protein RD08_RS03065 PF01548 RD08_RS03065 RD08_RS03065 PF02371 RD08_RS03065 RD08_RS03070 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS03075 PF01464 Transglycosylase SLT domain RD08_RS03075 PF01476 LysM domain RD08_RS03080 PF00753 Metallo-beta-lactamase superfamily RD08_RS03080 PF16123 RD08_RS03080 RD08_RS03085 PF08241 Methyltransferase domain RD08_RS03090 PF00075 RNase H RD08_RS03095 PF00665 Integrase core domain RD08_RS03095 PF13011 RD08_RS03095 RD08_RS03100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD08_RS03100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD08_RS03110 PF00487 RD08_RS03110 RD08_RS03125 PF00665 Integrase core domain RD08_RS03125 PF13011 RD08_RS03125 RD08_RS03130 PF13460 NADH(P)-binding RD08_RS03135 PF01575 MaoC like domain RD08_RS03135 PF13452 N-terminal half of MaoC dehydratase RD08_RS03140 PF02803 Thiolase, C-terminal domain RD08_RS03145 PF01796 RD08_RS03145 RD08_RS03145 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) RD08_RS03150 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS03155 PF00106 short chain dehydrogenase RD08_RS03160 PF13458 Periplasmic binding protein RD08_RS03165 PF00005 ABC transporter RD08_RS03165 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS03170 PF00005 ABC transporter RD08_RS03175 PF02653 RD08_RS03175 RD08_RS03180 PF02653 RD08_RS03180 RD08_RS03185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS03185 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS03185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS03190 PF00440 Bacterial regulatory proteins, tetR family RD08_RS03195 PF00501 AMP-binding enzyme RD08_RS03195 PF14535 AMP-binding enzyme C-terminal domain RD08_RS03200 PF02515 CoA-transferase family III RD08_RS03205 PF00106 short chain dehydrogenase RD08_RS03210 PF00665 Integrase core domain RD08_RS03210 PF13011 RD08_RS03210 RD08_RS03220 PF04285 RD08_RS03220 RD08_RS03225 PF04293 RD08_RS03225 RD08_RS03230 PF07690 Major Facilitator Superfamily RD08_RS03235 PF03972 MmgE/PrpD family RD08_RS03240 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS03245 PF05034 Methylaspartate ammonia-lyase N-terminus RD08_RS03245 PF07476 Methylaspartate ammonia-lyase C-terminus RD08_RS03250 PF00392 Bacterial regulatory proteins, gntR family RD08_RS03250 PF07702 UTRA domain RD08_RS03260 PF04828 Glutathione-dependent formaldehyde-activating enzyme RD08_RS03265 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS03270 PF00376 MerR family regulatory protein RD08_RS03270 PF09278 MerR, DNA binding RD08_RS03275 PF01774 UreD urease accessory protein RD08_RS03280 PF00547 Urease, gamma subunit RD08_RS03285 PF04955 RD08_RS03285 RD08_RS03290 PF00699 Urease beta subunit RD08_RS03295 PF00449 Urease alpha-subunit, N-terminal domain RD08_RS03295 PF01979 Amidohydrolase family RD08_RS03300 PF02814 UreE urease accessory protein, N-terminal domain RD08_RS03300 PF05194 UreE urease accessory protein, C-terminal domain RD08_RS03305 PF01730 UreF RD08_RS03310 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD08_RS03315 PF00665 Integrase core domain RD08_RS03315 PF13011 RD08_RS03315 RD08_RS03320 PF00665 Integrase core domain RD08_RS03320 PF13011 RD08_RS03320 RD08_RS03325 PF07171 MlrC C-terminus RD08_RS03325 PF07364 Protein of unknown function (DUF1485) RD08_RS03335 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS03340 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS03345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS03350 PF00171 Aldehyde dehydrogenase family RD08_RS03355 PF00202 Aminotransferase class-III RD08_RS03360 PF00155 Aminotransferase class I and II RD08_RS03360 PF00392 Bacterial regulatory proteins, gntR family RD08_RS03365 PF00186 Dihydrofolate reductase RD08_RS03370 PF00303 Thymidylate synthase RD08_RS03375 PF02566 OsmC-like protein RD08_RS03380 PF03232 RD08_RS03380 RD08_RS03385 PF00953 Glycosyl transferase family 4 RD08_RS03390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD08_RS03390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD08_RS03390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD08_RS03395 PF01370 NAD dependent epimerase/dehydratase family RD08_RS03400 PF03023 RD08_RS03400 RD08_RS03405 PF00534 Glycosyl transferases group 1 RD08_RS03405 PF13439 Glycosyltransferase Family 4 RD08_RS03410 PF00733 Asparagine synthase RD08_RS03410 PF13537 Glutamine amidotransferase domain RD08_RS03415 PF00534 Glycosyl transferases group 1 RD08_RS03415 PF13579 Glycosyl transferase 4-like domain RD08_RS03420 PF13439 Glycosyltransferase Family 4 RD08_RS03420 PF13692 Glycosyl transferases group 1 RD08_RS03425 PF00534 Glycosyl transferases group 1 RD08_RS03425 PF13477 Glycosyl transferase 4-like RD08_RS03430 PF00342 Phosphoglucose isomerase RD08_RS03435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD08_RS03435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD08_RS03435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD08_RS03435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD08_RS03440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS03445 PF01565 FAD binding domain RD08_RS03445 PF02913 FAD linked oxidases, C-terminal domain RD08_RS03450 PF00072 Response regulator receiver domain RD08_RS03450 PF00486 Transcriptional regulatory protein, C terminal RD08_RS03455 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS03455 PF00672 HAMP domain RD08_RS03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS03460 PF00884 Sulfatase RD08_RS03465 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD08_RS03465 PF09298 Fumarylacetoacetase N-terminal RD08_RS03470 PF04209 homogentisate 1,2-dioxygenase RD08_RS03475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS03475 PF03466 LysR substrate binding domain RD08_RS03480 PF10932 RD08_RS03480 RD08_RS03485 PF01494 FAD binding domain RD08_RS03490 PF00753 Metallo-beta-lactamase superfamily RD08_RS03495 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RD08_RS03495 PF06827 Zinc finger found in FPG and IleRS RD08_RS03495 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RD08_RS03500 PF13432 Tetratricopeptide repeat RD08_RS03500 PF14559 Tetratricopeptide repeat RD08_RS03505 PF03550 Outer membrane lipoprotein LolB RD08_RS03510 PF00288 GHMP kinases N terminal domain RD08_RS03510 PF08544 GHMP kinases C terminal RD08_RS03520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RD08_RS03520 PF14572 Phosphoribosyl synthetase-associated domain RD08_RS03525 PF01386 Ribosomal L25p family RD08_RS03525 PF14693 Ribosomal protein TL5, C-terminal domain RD08_RS03530 PF01195 Peptidyl-tRNA hydrolase RD08_RS03535 PF02517 CAAX protease self-immunity RD08_RS03540 PF01926 50S ribosome-binding GTPase RD08_RS03540 PF06071 Protein of unknown function (DUF933) RD08_RS03545 PF00589 Phage integrase family RD08_RS03545 PF13356 Domain of unknown function (DUF4102) RD08_RS03545 PF14659 Phage integrase, N-terminal SAM-like domain RD08_RS03550 PF02661 Fic/DOC family RD08_RS03555 PF04851 Type III restriction enzyme, res subunit RD08_RS03560 PF01555 DNA methylase RD08_RS03565 PF13304 AAA domain RD08_RS03570 PF00665 Integrase core domain RD08_RS03570 PF13011 RD08_RS03570 RD08_RS03585 PF00580 UvrD/REP helicase N-terminal domain RD08_RS03590 PF13361 UvrD-like helicase C-terminal domain RD08_RS03595 PF12835 Integrase RD08_RS03600 PF00665 Integrase core domain RD08_RS03600 PF13011 RD08_RS03600 RD08_RS03605 PF03797 Autotransporter beta-domain RD08_RS03605 PF12951 RD08_RS03605 RD08_RS03610 PF12951 RD08_RS03610 RD08_RS03610 PF13018 RD08_RS03610 RD08_RS03615 PF00486 Transcriptional regulatory protein, C terminal RD08_RS03625 PF00665 Integrase core domain RD08_RS03625 PF13011 RD08_RS03625 RD08_RS03630 PF00440 Bacterial regulatory proteins, tetR family RD08_RS03645 PF00665 Integrase core domain RD08_RS03645 PF13011 RD08_RS03645 RD08_RS03650 PF07883 Cupin domain RD08_RS03650 PF13411 MerR HTH family regulatory protein RD08_RS03650 PF13560 Helix-turn-helix domain RD08_RS03655 PF01266 FAD dependent oxidoreductase RD08_RS03660 PF05899 Protein of unknown function (DUF861) RD08_RS03665 PF01019 Gamma-glutamyltranspeptidase RD08_RS03670 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS03675 PF13531 Bacterial extracellular solute-binding protein RD08_RS03680 PF01810 RD08_RS03680 RD08_RS03685 PF00665 Integrase core domain RD08_RS03685 PF13011 RD08_RS03685 RD08_RS03690 PF01037 AsnC family RD08_RS03690 PF13404 AsnC-type helix-turn-helix domain RD08_RS03710 PF13663 RD08_RS03710 RD08_RS03720 PF07336 Protein of unknown function (DUF1470) RD08_RS03720 PF11706 CGNR zinc finger RD08_RS03725 PF00561 alpha/beta hydrolase fold RD08_RS03730 PF13531 Bacterial extracellular solute-binding protein RD08_RS03735 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS03740 PF00005 ABC transporter RD08_RS03740 PF03459 TOBE domain RD08_RS03745 PF13091 PLD-like domain RD08_RS03750 PF00665 Integrase core domain RD08_RS03750 PF13011 RD08_RS03750 RD08_RS03755 PF03167 Uracil DNA glycosylase superfamily RD08_RS03760 PF00270 DEAD/DEAH box helicase RD08_RS03760 PF00271 Helicase conserved C-terminal domain RD08_RS03760 PF08017 RD08_RS03760 RD08_RS03765 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase RD08_RS03770 PF01743 Poly A polymerase head domain RD08_RS03770 PF12627 Probable RNA and SrmB- binding site of polymerase A RD08_RS03775 PF01464 Transglycosylase SLT domain RD08_RS03775 PF14718 Soluble lytic murein transglycosylase L domain RD08_RS03780 PF01812 5-formyltetrahydrofolate cyclo-ligase family RD08_RS03785 PF00083 Sugar (and other) transporter RD08_RS03790 PF00850 Histone deacetylase domain RD08_RS03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS03795 PF03466 LysR substrate binding domain RD08_RS03800 PF00665 Integrase core domain RD08_RS03800 PF13011 RD08_RS03800 RD08_RS03805 PF02219 Methylenetetrahydrofolate reductase RD08_RS03810 PF04020 RD08_RS03810 RD08_RS03815 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RD08_RS03815 PF05221 S-adenosyl-L-homocysteine hydrolase RD08_RS03820 PF13439 Glycosyltransferase Family 4 RD08_RS03820 PF13692 Glycosyl transferases group 1 RD08_RS03825 PF06945 RD08_RS03825 RD08_RS03830 PF00438 S-adenosylmethionine synthetase, N-terminal domain RD08_RS03830 PF02772 S-adenosylmethionine synthetase, central domain RD08_RS03830 PF02773 S-adenosylmethionine synthetase, C-terminal domain RD08_RS03835 PF03279 RD08_RS03835 RD08_RS03840 PF03279 RD08_RS03840 RD08_RS03845 PF01678 Diaminopimelate epimerase RD08_RS03850 PF04340 Protein of unknown function, DUF484 RD08_RS03855 PF00589 Phage integrase family RD08_RS03855 PF02899 Phage integrase, N-terminal SAM-like domain RD08_RS03860 PF00593 TonB dependent receptor RD08_RS03860 PF07715 TonB-dependent Receptor Plug Domain RD08_RS03865 PF03824 RD08_RS03865 RD08_RS03870 PF06226 RD08_RS03870 RD08_RS03875 PF01297 Periplasmic solute binding protein family RD08_RS03880 PF00950 RD08_RS03880 RD08_RS03885 PF00005 ABC transporter RD08_RS03895 PF01475 Ferric uptake regulator family RD08_RS03900 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD08_RS03900 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD08_RS03905 PF01258 Prokaryotic dksA/traR C4-type zinc finger RD08_RS03910 PF00227 Proteasome subunit RD08_RS03915 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS03915 PF07724 AAA domain (Cdc48 subfamily) RD08_RS03915 PF10431 C-terminal, D2-small domain, of ClpB protein RD08_RS03920 PF11604 Copper binding periplasmic protein CusF RD08_RS03925 PF01923 Cobalamin adenosyltransferase RD08_RS03930 PF00665 Integrase core domain RD08_RS03930 PF13011 RD08_RS03930 RD08_RS03935 PF00665 Integrase core domain RD08_RS03935 PF13011 RD08_RS03935 RD08_RS03940 PF02525 Flavodoxin-like fold RD08_RS03945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD08_RS03945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD08_RS03950 PF01019 Gamma-glutamyltranspeptidase RD08_RS03955 PF01970 RD08_RS03955 RD08_RS03960 PF07331 RD08_RS03960 RD08_RS03965 PF00665 Integrase core domain RD08_RS03965 PF13011 RD08_RS03965 RD08_RS03975 PF05164 Cell division protein ZapA RD08_RS03985 PF00665 Integrase core domain RD08_RS03985 PF13011 RD08_RS03985 RD08_RS03990 PF04402 Protein of unknown function (DUF541) RD08_RS03995 PF01790 RD08_RS03995 RD08_RS04000 PF00920 Dehydratase family RD08_RS04005 PF00034 Cytochrome c RD08_RS04010 PF01625 Peptide methionine sulfoxide reductase RD08_RS04015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD08_RS04015 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal RD08_RS04020 PF01037 AsnC family RD08_RS04020 PF13412 Winged helix-turn-helix DNA-binding RD08_RS04055 PF02201 SWIB/MDM2 domain RD08_RS04060 PF01546 Peptidase family M20/M25/M40 RD08_RS04060 PF07687 Peptidase dimerisation domain RD08_RS04065 PF01979 Amidohydrolase family RD08_RS04070 PF00005 ABC transporter RD08_RS04070 PF12848 ABC transporter RD08_RS04070 PF16326 RD08_RS04070 RD08_RS04080 PF02381 MraZ protein RD08_RS04085 PF01795 MraW methylase family RD08_RS04090 PF04999 RD08_RS04090 RD08_RS04095 PF00905 Penicillin binding protein transpeptidase domain RD08_RS04095 PF03717 Penicillin-binding Protein dimerisation domain RD08_RS04100 PF01225 Mur ligase family, catalytic domain RD08_RS04100 PF02875 Mur ligase family, glutamate ligase domain RD08_RS04100 PF08245 Mur ligase middle domain RD08_RS04105 PF00953 Glycosyl transferase family 4 RD08_RS04110 PF02875 Mur ligase family, glutamate ligase domain RD08_RS04110 PF08245 Mur ligase middle domain RD08_RS04115 PF01098 RD08_RS04115 RD08_RS04120 PF03033 Glycosyltransferase family 28 N-terminal domain RD08_RS04120 PF04101 Glycosyltransferase family 28 C-terminal domain RD08_RS04125 PF01225 Mur ligase family, catalytic domain RD08_RS04125 PF02875 Mur ligase family, glutamate ligase domain RD08_RS04125 PF08245 Mur ligase middle domain RD08_RS04130 PF01820 D-ala D-ala ligase N-terminus RD08_RS04130 PF07478 D-ala D-ala ligase C-terminus RD08_RS04135 PF03799 Cell division protein FtsQ RD08_RS04135 PF08478 POTRA domain, FtsQ-type RD08_RS04140 PF02491 SHS2 domain inserted in FTSA RD08_RS04140 PF14450 Cell division protein FtsA RD08_RS04145 PF00091 Tubulin/FtsZ family, GTPase domain RD08_RS04145 PF12327 FtsZ family, C-terminal domain RD08_RS04150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RD08_RS04155 PF02120 Flagellar hook-length control protein FliK RD08_RS04160 PF01551 Peptidase family M23 RD08_RS04165 PF01043 SecA preprotein cross-linking domain RD08_RS04165 PF02810 SEC-C motif RD08_RS04165 PF07516 SecA Wing and Scaffold domain RD08_RS04165 PF07517 SecA DEAD-like domain RD08_RS04170 PF13468 Glyoxalase-like domain RD08_RS04175 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS04180 PF05995 Cysteine dioxygenase type I RD08_RS04185 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS04190 PF01266 FAD dependent oxidoreductase RD08_RS04195 PF01037 AsnC family RD08_RS04195 PF13412 Winged helix-turn-helix DNA-binding RD08_RS04200 PF04752 RD08_RS04200 RD08_RS04205 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RD08_RS04210 PF00665 Integrase core domain RD08_RS04210 PF13011 RD08_RS04210 RD08_RS04215 PF01488 Shikimate / quinate 5-dehydrogenase RD08_RS04215 PF08501 Shikimate dehydrogenase substrate binding domain RD08_RS04220 PF03544 Gram-negative bacterial TonB protein C-terminal RD08_RS04225 PF00773 RNB domain RD08_RS04230 PF05728 Uncharacterised protein family (UPF0227) RD08_RS04235 PF01225 Mur ligase family, catalytic domain RD08_RS04235 PF02875 Mur ligase family, glutamate ligase domain RD08_RS04235 PF08245 Mur ligase middle domain RD08_RS04240 PF00578 AhpC/TSA family RD08_RS04245 PF01220 Dehydroquinase class II RD08_RS04250 PF00364 Biotin-requiring enzyme RD08_RS04255 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RD08_RS04255 PF02785 Biotin carboxylase C-terminal domain RD08_RS04255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS04260 PF06325 Ribosomal protein L11 methyltransferase (PrmA) RD08_RS04265 PF11906 RD08_RS04265 RD08_RS04265 PF13719 RD08_RS04265 RD08_RS04270 PF00294 pfkB family carbohydrate kinase RD08_RS04275 PF05433 RD08_RS04275 RD08_RS04280 PF00550 Phosphopantetheine attachment site RD08_RS04285 PF04914 DltD C-terminal region RD08_RS04295 PF03062 RD08_RS04295 RD08_RS04300 PF00501 AMP-binding enzyme RD08_RS04305 PF02325 RD08_RS04305 RD08_RS04310 PF07382 RD08_RS04310 RD08_RS04315 PF00268 Ribonucleotide reductase, small chain RD08_RS04320 PF00317 Ribonucleotide reductase, all-alpha domain RD08_RS04320 PF02867 Ribonucleotide reductase, barrel domain RD08_RS04320 PF03477 ATP cone domain RD08_RS04325 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RD08_RS04325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS04335 PF01037 AsnC family RD08_RS04335 PF13404 AsnC-type helix-turn-helix domain RD08_RS04345 PF07690 Major Facilitator Superfamily RD08_RS04350 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD08_RS04355 PF00583 Acetyltransferase (GNAT) family RD08_RS04355 PF13549 ATP-grasp domain RD08_RS04355 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS04360 PF00665 Integrase core domain RD08_RS04360 PF13011 RD08_RS04360 RD08_RS04365 PF00392 Bacterial regulatory proteins, gntR family RD08_RS04365 PF07729 FCD domain RD08_RS04375 PF00270 DEAD/DEAH box helicase RD08_RS04375 PF00271 Helicase conserved C-terminal domain RD08_RS04375 PF03880 DbpA RNA binding domain RD08_RS04380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD08_RS04385 PF00857 Isochorismatase family RD08_RS04390 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS04395 PF00005 ABC transporter RD08_RS04405 PF02230 Phospholipase/Carboxylesterase RD08_RS04410 PF04751 Protein of unknown function (DUF615) RD08_RS04415 PF01523 Putative modulator of DNA gyrase RD08_RS04420 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS04425 PF00572 Ribosomal protein L13 RD08_RS04430 PF00380 Ribosomal protein S9/S16 RD08_RS04435 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD08_RS04435 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD08_RS04445 PF01521 Iron-sulphur cluster biosynthesis RD08_RS04450 PF03702 Uncharacterised protein family (UPF0075) RD08_RS04455 PF01551 Peptidase family M23 RD08_RS04460 PF00665 Integrase core domain RD08_RS04460 PF13011 RD08_RS04460 RD08_RS04465 PF00579 tRNA synthetases class I (W and Y) RD08_RS04465 PF01479 S4 domain RD08_RS04470 PF01161 Phosphatidylethanolamine-binding protein RD08_RS04475 PF00464 Serine hydroxymethyltransferase RD08_RS04480 PF03477 ATP cone domain RD08_RS04485 PF01965 DJ-1/PfpI family RD08_RS04490 PF00857 Isochorismatase family RD08_RS04495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD08_RS04495 PF01872 RibD C-terminal domain RD08_RS04500 PF00665 Integrase core domain RD08_RS04500 PF13011 RD08_RS04500 RD08_RS04510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS04515 PF13452 N-terminal half of MaoC dehydratase RD08_RS04520 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS04525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS04525 PF03466 LysR substrate binding domain RD08_RS04530 PF02515 CoA-transferase family III RD08_RS04535 PF07690 Major Facilitator Superfamily RD08_RS04540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS04540 PF03466 LysR substrate binding domain RD08_RS04550 PF02678 Pirin RD08_RS04550 PF05726 Pirin C-terminal cupin domain RD08_RS04555 PF13847 Methyltransferase domain RD08_RS04560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS04565 PF00072 Response regulator receiver domain RD08_RS04565 PF02954 Bacterial regulatory protein, Fis family RD08_RS04570 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD08_RS04570 PF06481 COX Aromatic Rich Motif RD08_RS04575 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD08_RS04580 PF00510 Cytochrome c oxidase subunit III RD08_RS04585 PF03626 RD08_RS04585 RD08_RS04590 PF12840 Helix-turn-helix domain RD08_RS04600 PF07681 RD08_RS04600 RD08_RS04605 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) RD08_RS04610 PF05114 Protein of unknown function (DUF692) RD08_RS04615 PF10048 RD08_RS04615 RD08_RS04620 PF11162 RD08_RS04620 RD08_RS04625 PF00593 TonB dependent receptor RD08_RS04625 PF07715 TonB-dependent Receptor Plug Domain RD08_RS04630 PF03929 RD08_RS04630 RD08_RS04635 PF02417 RD08_RS04635 RD08_RS04640 PF01476 LysM domain RD08_RS04640 PF01551 Peptidase family M23 RD08_RS04650 PF05425 RD08_RS04650 RD08_RS04655 PF04461 Protein of unknown function (DUF520) RD08_RS04660 PF03640 RD08_RS04660 RD08_RS04665 PF04542 Sigma-70 region 2 RD08_RS04665 PF08281 Sigma-70, region 4 RD08_RS04675 PF00665 Integrase core domain RD08_RS04675 PF13011 RD08_RS04675 RD08_RS04680 PF00816 H-NS histone family RD08_RS04685 PF00795 Carbon-nitrogen hydrolase RD08_RS04690 PF01523 Putative modulator of DNA gyrase RD08_RS04695 PF00793 DAHP synthetase I family RD08_RS04700 PF05860 haemagglutination activity domain RD08_RS04700 PF11713 Peptidase C80 family RD08_RS04700 PF13332 RD08_RS04700 RD08_RS04705 PF01565 FAD binding domain RD08_RS04705 PF02913 FAD linked oxidases, C-terminal domain RD08_RS04710 PF01565 FAD binding domain RD08_RS04710 PF02913 FAD linked oxidases, C-terminal domain RD08_RS04715 PF01565 FAD binding domain RD08_RS04720 PF02754 RD08_RS04720 RD08_RS04720 PF13183 4Fe-4S dicluster domain RD08_RS04725 PF00756 Putative esterase RD08_RS04730 PF00593 TonB dependent receptor RD08_RS04730 PF07715 TonB-dependent Receptor Plug Domain RD08_RS04735 PF12833 Helix-turn-helix domain RD08_RS04740 PF02233 NAD(P) transhydrogenase beta subunit RD08_RS04745 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RD08_RS04745 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RD08_RS04750 PF05013 N-formylglutamate amidohydrolase RD08_RS04755 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS04760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS04760 PF03466 LysR substrate binding domain RD08_RS04765 PF03054 tRNA methyl transferase RD08_RS04770 PF01925 RD08_RS04770 RD08_RS04775 PF13410 Glutathione S-transferase, C-terminal domain RD08_RS04775 PF13417 Glutathione S-transferase, N-terminal domain RD08_RS04780 PF00206 Lyase RD08_RS04780 PF08328 Adenylosuccinate lyase C-terminal RD08_RS04785 PF01322 Cytochrome C' RD08_RS04790 PF01292 Prokaryotic cytochrome b561 RD08_RS04800 PF11254 RD08_RS04800 RD08_RS04805 PF01594 RD08_RS04805 RD08_RS04810 PF00665 Integrase core domain RD08_RS04810 PF13011 RD08_RS04810 RD08_RS04815 PF00392 Bacterial regulatory proteins, gntR family RD08_RS04815 PF07729 FCD domain RD08_RS04825 PF01425 Amidase RD08_RS04830 PF02515 CoA-transferase family III RD08_RS04835 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS04845 PF09084 NMT1/THI5 like RD08_RS04850 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS04855 PF00005 ABC transporter RD08_RS04860 PF01522 Polysaccharide deacetylase RD08_RS04865 PF00106 short chain dehydrogenase RD08_RS04870 PF01614 Bacterial transcriptional regulator RD08_RS04870 PF09339 IclR helix-turn-helix domain RD08_RS04880 PF00501 AMP-binding enzyme RD08_RS04880 PF13193 AMP-binding enzyme C-terminal domain RD08_RS04885 PF01042 Endoribonuclease L-PSP RD08_RS04890 PF02653 RD08_RS04890 RD08_RS04895 PF02653 RD08_RS04895 RD08_RS04905 PF00005 ABC transporter RD08_RS04910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD08_RS04915 PF00665 Integrase core domain RD08_RS04915 PF13011 RD08_RS04915 RD08_RS04920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD08_RS04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS04925 PF03466 LysR substrate binding domain RD08_RS04930 PF12796 Ankyrin repeats (3 copies) RD08_RS04935 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD08_RS04940 PF07690 Major Facilitator Superfamily RD08_RS04945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS04945 PF03466 LysR substrate binding domain RD08_RS04955 PF00665 Integrase core domain RD08_RS04955 PF13011 RD08_RS04955 RD08_RS04960 PF01425 Amidase RD08_RS04965 PF00677 Lumazine binding domain RD08_RS04970 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS04975 PF01037 AsnC family RD08_RS04975 PF13412 Winged helix-turn-helix DNA-binding RD08_RS04980 PF05995 Cysteine dioxygenase type I RD08_RS04985 PF00501 AMP-binding enzyme RD08_RS04985 PF13193 AMP-binding enzyme C-terminal domain RD08_RS04990 PF10994 Protein of unknown function (DUF2817) RD08_RS04995 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05000 PF00005 ABC transporter RD08_RS05010 PF03061 Thioesterase superfamily RD08_RS05015 PF00107 Zinc-binding dehydrogenase RD08_RS05015 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS05020 PF13468 Glyoxalase-like domain RD08_RS05025 PF05899 Protein of unknown function (DUF861) RD08_RS05030 PF00665 Integrase core domain RD08_RS05030 PF13011 RD08_RS05030 RD08_RS05035 PF00122 E1-E2 ATPase RD08_RS05035 PF00403 Heavy-metal-associated domain RD08_RS05035 PF00702 haloacid dehalogenase-like hydrolase RD08_RS05040 PF01966 HD domain RD08_RS05045 PF00155 Aminotransferase class I and II RD08_RS05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS05050 PF03466 LysR substrate binding domain RD08_RS05055 PF12697 Alpha/beta hydrolase family RD08_RS05060 PF07690 Major Facilitator Superfamily RD08_RS05065 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS05070 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS05075 PF00665 Integrase core domain RD08_RS05075 PF13011 RD08_RS05075 RD08_RS05080 PF13609 Gram-negative porin RD08_RS05085 PF02548 Ketopantoate hydroxymethyltransferase RD08_RS05090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS05090 PF03466 LysR substrate binding domain RD08_RS05095 PF00665 Integrase core domain RD08_RS05095 PF13011 RD08_RS05095 RD08_RS05110 PF00665 Integrase core domain RD08_RS05110 PF13011 RD08_RS05110 RD08_RS05130 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS05135 PF00440 Bacterial regulatory proteins, tetR family RD08_RS05140 PF00665 Integrase core domain RD08_RS05140 PF13011 RD08_RS05140 RD08_RS05145 PF05170 RD08_RS05145 RD08_RS05150 PF03352 Methyladenine glycosylase RD08_RS05155 PF00376 MerR family regulatory protein RD08_RS05155 PF09278 MerR, DNA binding RD08_RS05170 PF13416 Bacterial extracellular solute-binding protein RD08_RS05175 PF00665 Integrase core domain RD08_RS05175 PF13011 RD08_RS05175 RD08_RS05180 PF12831 FAD dependent oxidoreductase RD08_RS05185 PF00005 ABC transporter RD08_RS05190 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05195 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05200 PF03972 MmgE/PrpD family RD08_RS05205 PF03972 MmgE/PrpD family RD08_RS05215 PF00665 Integrase core domain RD08_RS05215 PF13011 RD08_RS05215 RD08_RS05220 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS05225 PF00392 Bacterial regulatory proteins, gntR family RD08_RS05225 PF07729 FCD domain RD08_RS05230 PF04412 RD08_RS05230 RD08_RS05235 PF01989 Protein of unknown function DUF126 RD08_RS05240 PF03992 Antibiotic biosynthesis monooxygenase RD08_RS05245 PF00665 Integrase core domain RD08_RS05245 PF13011 RD08_RS05245 RD08_RS05250 PF00465 Iron-containing alcohol dehydrogenase RD08_RS05255 PF00665 Integrase core domain RD08_RS05255 PF13011 RD08_RS05255 RD08_RS05265 PF03180 NLPA lipoprotein RD08_RS05270 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05275 PF00005 ABC transporter RD08_RS05275 PF09383 NIL domain RD08_RS05280 PF01055 Glycosyl hydrolases family 31 RD08_RS05290 PF00459 Inositol monophosphatase family RD08_RS05295 PF00665 Integrase core domain RD08_RS05295 PF13011 RD08_RS05295 RD08_RS05300 PF00501 AMP-binding enzyme RD08_RS05300 PF13193 AMP-binding enzyme C-terminal domain RD08_RS05305 PF01546 Peptidase family M20/M25/M40 RD08_RS05305 PF07687 Peptidase dimerisation domain RD08_RS05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS05310 PF03466 LysR substrate binding domain RD08_RS05315 PF03601 RD08_RS05315 RD08_RS05320 PF03061 Thioesterase superfamily RD08_RS05325 PF00571 CBS domain RD08_RS05325 PF01769 Divalent cation transporter RD08_RS05325 PF03448 MgtE intracellular N domain RD08_RS05330 PF00665 Integrase core domain RD08_RS05330 PF13011 RD08_RS05330 RD08_RS05335 PF00355 Rieske [2Fe-2S] domain RD08_RS05335 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD08_RS05340 PF01757 RD08_RS05340 RD08_RS05345 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS05350 PF01614 Bacterial transcriptional regulator RD08_RS05350 PF09339 IclR helix-turn-helix domain RD08_RS05355 PF02609 Exonuclease VII small subunit RD08_RS05360 PF00348 Polyprenyl synthetase RD08_RS05365 PF02779 Transketolase, pyrimidine binding domain RD08_RS05365 PF02780 Transketolase, C-terminal domain RD08_RS05365 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RD08_RS05370 PF02649 Type I GTP cyclohydrolase folE2 RD08_RS05375 PF01250 Ribosomal protein S6 RD08_RS05385 PF01084 Ribosomal protein S18 RD08_RS05390 PF01281 Ribosomal protein L9, N-terminal domain RD08_RS05390 PF03948 Ribosomal protein L9, C-terminal domain RD08_RS05400 PF00772 DnaB-like helicase N terminal domain RD08_RS05400 PF03796 DnaB-like helicase C terminal domain RD08_RS05405 PF13593 SBF-like CPA transporter family (DUF4137) RD08_RS05410 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD08_RS05415 PF02562 PhoH-like protein RD08_RS05415 PF13638 PIN domain RD08_RS05420 PF00578 AhpC/TSA family RD08_RS05425 PF04430 Protein of unknown function (DUF498/DUF598) RD08_RS05430 PF00155 Aminotransferase class I and II RD08_RS05435 PF00742 Homoserine dehydrogenase RD08_RS05435 PF01842 ACT domain RD08_RS05435 PF03447 Homoserine dehydrogenase, NAD binding domain RD08_RS05440 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS05440 PF14821 Threonine synthase N terminus RD08_RS05445 PF06004 Bacterial protein of unknown function (DUF903) RD08_RS05450 PF00665 Integrase core domain RD08_RS05450 PF13011 RD08_RS05450 RD08_RS05455 PF02615 Malate/L-lactate dehydrogenase RD08_RS05465 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS05470 PF00665 Integrase core domain RD08_RS05470 PF13011 RD08_RS05470 RD08_RS05480 PF03328 HpcH/HpaI aldolase/citrate lyase family RD08_RS05485 PF01649 Ribosomal protein S20 RD08_RS05490 PF04773 FecR protein RD08_RS05490 PF16220 RD08_RS05490 RD08_RS05495 PF03023 RD08_RS05495 RD08_RS05500 PF00106 short chain dehydrogenase RD08_RS05505 PF00406 Adenylate kinase RD08_RS05505 PF05191 Adenylate kinase, active site lid RD08_RS05510 PF02348 Cytidylyltransferase RD08_RS05515 PF03966 Trm112p-like protein RD08_RS05520 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RD08_RS05525 PF02472 Biopolymer transport protein ExbD/TolR RD08_RS05530 PF01618 RD08_RS05530 RD08_RS05535 PF00665 Integrase core domain RD08_RS05535 PF13011 RD08_RS05535 RD08_RS05540 PF02601 RD08_RS05540 RD08_RS05540 PF13742 RD08_RS05540 RD08_RS05545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD08_RS05545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD08_RS05550 PF00654 Voltage gated chloride channel RD08_RS05555 PF00108 Thiolase, N-terminal domain RD08_RS05555 PF02803 Thiolase, C-terminal domain RD08_RS05560 PF02643 Uncharacterized ACR, COG1430 RD08_RS05565 PF00313 'Cold-shock' DNA-binding domain RD08_RS05570 PF02617 ATP-dependent Clp protease adaptor protein ClpS RD08_RS05575 PF00207 Alpha-2-macroglobulin family RD08_RS05575 PF01835 MG2 domain RD08_RS05575 PF07678 A-macroglobulin complement component RD08_RS05575 PF07703 Alpha-2-macroglobulin family N-terminal region RD08_RS05575 PF10569 Alpha-macro-globulin thiol-ester bond-forming region RD08_RS05575 PF11974 Alpha-2-macroglobulin MG1 domain RD08_RS05580 PF00905 Penicillin binding protein transpeptidase domain RD08_RS05580 PF00912 Transglycosylase RD08_RS05580 PF06832 RD08_RS05580 RD08_RS05585 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS05585 PF02861 Clp amino terminal domain RD08_RS05585 PF07724 AAA domain (Cdc48 subfamily) RD08_RS05585 PF10431 C-terminal, D2-small domain, of ClpB protein RD08_RS05590 PF04403 RD08_RS05590 RD08_RS05595 PF02470 RD08_RS05595 RD08_RS05600 PF03886 Protein of unknown function (DUF330) RD08_RS05605 PF00171 Aldehyde dehydrogenase family RD08_RS05605 PF01619 Proline dehydrogenase RD08_RS05605 PF14850 DNA-binding domain of Proline dehydrogenase RD08_RS05610 PF00665 Integrase core domain RD08_RS05610 PF13011 RD08_RS05610 RD08_RS05615 PF13458 Periplasmic binding protein RD08_RS05620 PF02653 RD08_RS05620 RD08_RS05625 PF02653 RD08_RS05625 RD08_RS05630 PF00005 ABC transporter RD08_RS05630 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS05635 PF00005 ABC transporter RD08_RS05640 PF07690 Major Facilitator Superfamily RD08_RS05645 PF00440 Bacterial regulatory proteins, tetR family RD08_RS05655 PF03212 Pertactin RD08_RS05655 PF03797 Autotransporter beta-domain RD08_RS05665 PF00543 Nitrogen regulatory protein P-II RD08_RS05670 PF04380 RD08_RS05670 RD08_RS05680 PF00665 Integrase core domain RD08_RS05680 PF13011 RD08_RS05680 RD08_RS05685 PF00083 Sugar (and other) transporter RD08_RS05695 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD08_RS05700 PF00510 Cytochrome c oxidase subunit III RD08_RS05705 PF03626 RD08_RS05705 RD08_RS05710 PF02104 RD08_RS05710 RD08_RS05715 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS05720 PF05013 N-formylglutamate amidohydrolase RD08_RS05725 PF00665 Integrase core domain RD08_RS05725 PF13011 RD08_RS05725 RD08_RS05730 PF00665 Integrase core domain RD08_RS05730 PF13011 RD08_RS05730 RD08_RS05735 PF13411 MerR HTH family regulatory protein RD08_RS05740 PF00122 E1-E2 ATPase RD08_RS05740 PF00702 haloacid dehalogenase-like hydrolase RD08_RS05745 PF01548 RD08_RS05745 RD08_RS05745 PF02371 RD08_RS05745 RD08_RS05750 PF00440 Bacterial regulatory proteins, tetR family RD08_RS05750 PF16925 RD08_RS05750 RD08_RS05755 PF13663 RD08_RS05755 RD08_RS05760 PF04055 Radical SAM superfamily RD08_RS05760 PF06968 Biotin and Thiamin Synthesis associated domain RD08_RS05770 PF07690 Major Facilitator Superfamily RD08_RS05775 PF08534 Redoxin RD08_RS05785 PF01738 Dienelactone hydrolase family RD08_RS05790 PF05359 RD08_RS05790 RD08_RS05795 PF01967 MoaC family RD08_RS05800 PF02597 ThiS family RD08_RS05805 PF02391 MoaE protein RD08_RS05810 PF00994 Probable molybdopterin binding domain RD08_RS05815 PF00994 Probable molybdopterin binding domain RD08_RS05815 PF03453 MoeA N-terminal region (domain I and II) RD08_RS05815 PF03454 MoeA C-terminal region (domain IV) RD08_RS05820 PF04055 Radical SAM superfamily RD08_RS05820 PF06463 Molybdenum Cofactor Synthesis C RD08_RS05820 PF13394 4Fe-4S single cluster domain RD08_RS05825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS05825 PF12727 PBP superfamily domain RD08_RS05830 PF00665 Integrase core domain RD08_RS05830 PF13011 RD08_RS05830 RD08_RS05835 PF00881 Nitroreductase family RD08_RS05840 PF00206 Lyase RD08_RS05840 PF14698 Argininosuccinate lyase C-terminal RD08_RS05845 PF00924 Mechanosensitive ion channel RD08_RS05850 PF00795 Carbon-nitrogen hydrolase RD08_RS05850 PF02540 NAD synthase RD08_RS05855 PF00543 Nitrogen regulatory protein P-II RD08_RS05860 PF03013 Pyrimidine dimer DNA glycosylase RD08_RS05880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS05880 PF03466 LysR substrate binding domain RD08_RS05885 PF01019 Gamma-glutamyltranspeptidase RD08_RS05890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS05895 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05900 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS05900 PF12911 RD08_RS05900 RD08_RS05905 PF03193 Protein of unknown function, DUF258 RD08_RS05910 PF01435 Peptidase family M48 RD08_RS05910 PF16491 RD08_RS05910 RD08_RS05915 PF00929 Exonuclease RD08_RS05920 PF03853 YjeF-related protein N-terminus RD08_RS05925 PF07848 PaaX-like protein RD08_RS05925 PF08223 PaaX-like protein C-terminal domain RD08_RS05930 PF05138 Phenylacetic acid catabolic protein RD08_RS05935 PF06243 Phenylacetic acid degradation B RD08_RS05940 PF05138 Phenylacetic acid catabolic protein RD08_RS05945 PF01883 Domain of unknown function DUF59 RD08_RS05950 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS05950 PF00175 Oxidoreductase NAD-binding domain RD08_RS05950 PF00970 Oxidoreductase FAD-binding domain RD08_RS05955 PF00665 Integrase core domain RD08_RS05955 PF13011 RD08_RS05955 RD08_RS05960 PF00171 Aldehyde dehydrogenase family RD08_RS05965 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS05970 PF03061 Thioesterase superfamily RD08_RS05975 PF00501 AMP-binding enzyme RD08_RS05975 PF14535 AMP-binding enzyme C-terminal domain RD08_RS05980 PF16970 RD08_RS05980 RD08_RS05985 PF00665 Integrase core domain RD08_RS05985 PF13011 RD08_RS05985 RD08_RS05990 PF00665 Integrase core domain RD08_RS05990 PF13011 RD08_RS05990 RD08_RS05995 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS06000 PF06808 RD08_RS06000 RD08_RS06005 PF04290 RD08_RS06005 RD08_RS06010 PF02769 AIR synthase related protein, C-terminal domain RD08_RS06010 PF13507 CobB/CobQ-like glutamine amidotransferase domain RD08_RS06015 PF05860 haemagglutination activity domain RD08_RS06015 PF13332 RD08_RS06015 RD08_RS06020 PF00665 Integrase core domain RD08_RS06020 PF13011 RD08_RS06020 RD08_RS06025 PF04632 RD08_RS06025 RD08_RS06030 PF12802 MarR family RD08_RS06035 PF01381 Helix-turn-helix RD08_RS06035 PF07883 Cupin domain RD08_RS06040 PF00596 Class II Aldolase and Adducin N-terminal domain RD08_RS06045 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS06050 PF01242 6-pyruvoyl tetrahydropterin synthase RD08_RS06060 PF00472 RF-1 domain RD08_RS06065 PF09997 RD08_RS06065 RD08_RS06070 PF01124 MAPEG family RD08_RS06075 PF01614 Bacterial transcriptional regulator RD08_RS06080 PF00701 Dihydrodipicolinate synthetase family RD08_RS06085 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS06095 PF05742 RD08_RS06095 RD08_RS06100 PF01965 DJ-1/PfpI family RD08_RS06105 PF04909 Amidohydrolase RD08_RS06110 PF00890 FAD binding domain RD08_RS06115 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS06120 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS06125 PF01614 Bacterial transcriptional regulator RD08_RS06125 PF09339 IclR helix-turn-helix domain RD08_RS06130 PF01266 FAD dependent oxidoreductase RD08_RS06130 PF16901 RD08_RS06130 RD08_RS06135 PF00455 RD08_RS06135 RD08_RS06135 PF08220 DeoR-like helix-turn-helix domain RD08_RS06140 PF00005 ABC transporter RD08_RS06140 PF08402 TOBE domain RD08_RS06145 PF00005 ABC transporter RD08_RS06155 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS06160 PF09928 RD08_RS06160 RD08_RS06165 PF13416 Bacterial extracellular solute-binding protein RD08_RS06175 PF04367 RD08_RS06175 RD08_RS06180 PF01037 AsnC family RD08_RS06180 PF13412 Winged helix-turn-helix DNA-binding RD08_RS06185 PF01266 FAD dependent oxidoreductase RD08_RS06190 PF00149 Calcineurin-like phosphoesterase RD08_RS06195 PF13476 AAA domain RD08_RS06200 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS06205 PF00665 Integrase core domain RD08_RS06205 PF13011 RD08_RS06205 RD08_RS06215 PF00196 Bacterial regulatory proteins, luxR family RD08_RS06215 PF08448 PAS fold RD08_RS06225 PF03797 Autotransporter beta-domain RD08_RS06230 PF09998 RD08_RS06230 RD08_RS06235 PF00478 IMP dehydrogenase / GMP reductase domain RD08_RS06235 PF00571 CBS domain RD08_RS06240 PF00117 Glutamine amidotransferase class-I RD08_RS06240 PF00958 GMP synthase C terminal domain RD08_RS06240 PF02540 NAD synthase RD08_RS06245 PF01381 Helix-turn-helix RD08_RS06250 PF07804 HipA-like C-terminal domain RD08_RS06250 PF07805 HipA-like N-terminal domain RD08_RS06250 PF13657 HipA N-terminal domain RD08_RS06255 PF00440 Bacterial regulatory proteins, tetR family RD08_RS06260 PF07690 Major Facilitator Superfamily RD08_RS06270 PF01614 Bacterial transcriptional regulator RD08_RS06270 PF09339 IclR helix-turn-helix domain RD08_RS06275 PF07969 Amidohydrolase family RD08_RS06280 PF09084 NMT1/THI5 like RD08_RS06285 PF00005 ABC transporter RD08_RS06290 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS06295 PF04412 RD08_RS06295 RD08_RS06300 PF01989 Protein of unknown function DUF126 RD08_RS06310 PF00665 Integrase core domain RD08_RS06310 PF13011 RD08_RS06310 RD08_RS06315 PF01965 DJ-1/PfpI family RD08_RS06320 PF00916 RD08_RS06320 RD08_RS06320 PF01740 STAS domain RD08_RS06325 PF00753 Metallo-beta-lactamase superfamily RD08_RS06325 PF07521 RNA-metabolising metallo-beta-lactamase RD08_RS06325 PF10996 Beta-Casp domain RD08_RS06330 PF00665 Integrase core domain RD08_RS06330 PF13011 RD08_RS06330 RD08_RS06335 PF13515 RD08_RS06335 RD08_RS06340 PF12706 Beta-lactamase superfamily domain RD08_RS06345 PF01965 DJ-1/PfpI family RD08_RS06345 PF12833 Helix-turn-helix domain RD08_RS06350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS06350 PF03466 LysR substrate binding domain RD08_RS06355 PF12973 ChrR Cupin-like domain RD08_RS06360 PF01593 Flavin containing amine oxidoreductase RD08_RS06360 PF13450 NAD(P)-binding Rossmann-like domain RD08_RS06365 PF00107 Zinc-binding dehydrogenase RD08_RS06365 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS06370 PF07690 Major Facilitator Superfamily RD08_RS06375 PF00155 Aminotransferase class I and II RD08_RS06375 PF00392 Bacterial regulatory proteins, gntR family RD08_RS06380 PF04299 Putative FMN-binding domain RD08_RS06385 PF01810 RD08_RS06385 RD08_RS06390 PF08818 Domain of unknown function (DU1801) RD08_RS06395 PF01546 Peptidase family M20/M25/M40 RD08_RS06395 PF07687 Peptidase dimerisation domain RD08_RS06400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS06405 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS06410 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS06415 PF00005 ABC transporter RD08_RS06415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS06420 PF00356 Bacterial regulatory proteins, lacI family RD08_RS06420 PF13377 Periplasmic binding protein-like domain RD08_RS06430 PF09278 MerR, DNA binding RD08_RS06435 PF00665 Integrase core domain RD08_RS06435 PF13011 RD08_RS06435 RD08_RS06440 PF04307 RD08_RS06440 RD08_RS06445 PF09335 RD08_RS06445 RD08_RS06450 PF00583 Acetyltransferase (GNAT) family RD08_RS06455 PF13649 Methyltransferase domain RD08_RS06460 PF00665 Integrase core domain RD08_RS06460 PF13011 RD08_RS06460 RD08_RS06470 PF00155 Aminotransferase class I and II RD08_RS06470 PF00392 Bacterial regulatory proteins, gntR family RD08_RS06475 PF00665 Integrase core domain RD08_RS06475 PF13011 RD08_RS06475 RD08_RS06480 PF00692 dUTPase RD08_RS06485 PF00665 Integrase core domain RD08_RS06485 PF13011 RD08_RS06485 RD08_RS06490 PF01632 Ribosomal protein L35 RD08_RS06495 PF00453 Ribosomal protein L20 RD08_RS06500 PF01409 tRNA synthetases class II core domain (F) RD08_RS06500 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RD08_RS06505 PF01588 Putative tRNA binding domain RD08_RS06505 PF03147 Ferredoxin-fold anticodon binding domain RD08_RS06505 PF03483 B3/4 domain RD08_RS06505 PF03484 tRNA synthetase B5 domain RD08_RS06510 PF00216 Bacterial DNA-binding protein RD08_RS06515 PF13411 MerR HTH family regulatory protein RD08_RS06530 PF04366 RD08_RS06530 RD08_RS06540 PF00665 Integrase core domain RD08_RS06540 PF13011 RD08_RS06540 RD08_RS06560 PF04231 Endonuclease I RD08_RS06565 PF08085 RD08_RS06565 RD08_RS06580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD08_RS06580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD08_RS06585 PF04381 Putative exonuclease, RdgC RD08_RS06595 PF02515 CoA-transferase family III RD08_RS06600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS06600 PF03466 LysR substrate binding domain RD08_RS06610 PF01796 RD08_RS06610 RD08_RS06610 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) RD08_RS06615 PF01575 MaoC like domain RD08_RS06620 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS06625 PF13343 Bacterial extracellular solute-binding protein RD08_RS06630 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS06635 PF00005 ABC transporter RD08_RS06635 PF08402 TOBE domain RD08_RS06640 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS06645 PF00083 Sugar (and other) transporter RD08_RS06650 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS06650 PF00672 HAMP domain RD08_RS06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS06650 PF08521 RD08_RS06650 RD08_RS06655 PF00072 Response regulator receiver domain RD08_RS06655 PF00486 Transcriptional regulatory protein, C terminal RD08_RS06660 PF00154 recA bacterial DNA recombination protein RD08_RS06665 PF02631 RecX family RD08_RS06670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS06670 PF03466 LysR substrate binding domain RD08_RS06675 PF01717 Cobalamin-independent synthase, Catalytic domain RD08_RS06675 PF08267 Cobalamin-independent synthase, N-terminal domain RD08_RS06680 PF11136 RD08_RS06680 RD08_RS06685 PF00549 CoA-ligase RD08_RS06685 PF08442 ATP-grasp domain RD08_RS06690 PF00549 CoA-ligase RD08_RS06690 PF02629 CoA binding domain RD08_RS06695 PF03741 RD08_RS06695 RD08_RS06700 PF03741 RD08_RS06700 RD08_RS06705 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RD08_RS06705 PF03900 Porphobilinogen deaminase, C-terminal domain RD08_RS06710 PF02602 Uroporphyrinogen-III synthase HemD RD08_RS06715 PF04375 RD08_RS06715 RD08_RS06720 PF07219 RD08_RS06720 RD08_RS06725 PF00719 Inorganic pyrophosphatase RD08_RS06730 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD08_RS06735 PF08085 RD08_RS06735 RD08_RS06760 PF08666 SAF domain RD08_RS06760 PF16976 RD08_RS06760 RD08_RS06765 PF00263 RD08_RS06765 RD08_RS06765 PF13629 RD08_RS06765 RD08_RS06770 PF00437 Type II/IV secretion system protein RD08_RS06770 PF00498 FHA domain RD08_RS06775 PF00482 Type II secretion system (T2SS), protein F RD08_RS06785 PF00665 Integrase core domain RD08_RS06785 PF13011 RD08_RS06785 RD08_RS06790 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS06795 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD08_RS06795 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD08_RS06800 PF02615 Malate/L-lactate dehydrogenase RD08_RS06805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS06805 PF03466 LysR substrate binding domain RD08_RS06810 PF01244 Membrane dipeptidase (Peptidase family M19) RD08_RS06815 PF00665 Integrase core domain RD08_RS06815 PF13011 RD08_RS06815 RD08_RS06820 PF01266 FAD dependent oxidoreductase RD08_RS06825 PF04267 Sarcosine oxidase, delta subunit family RD08_RS06830 PF01571 Aminomethyltransferase folate-binding domain RD08_RS06830 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS06830 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD08_RS06830 PF13510 2Fe-2S iron-sulfur cluster binding domain RD08_RS06835 PF04268 Sarcosine oxidase, gamma subunit family RD08_RS06840 PF00551 Formyl transferase RD08_RS06845 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS06850 PF03972 MmgE/PrpD family RD08_RS06855 PF00561 alpha/beta hydrolase fold RD08_RS06865 PF01565 FAD binding domain RD08_RS06865 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RD08_RS06870 PF01113 Dihydrodipicolinate reductase, N-terminus RD08_RS06870 PF05173 Dihydrodipicolinate reductase, C-terminus RD08_RS06875 PF04355 SmpA / OmlA family RD08_RS06880 PF01475 Ferric uptake regulator family RD08_RS06885 PF02463 RecF/RecN/SMC N terminal domain RD08_RS06890 PF01513 ATP-NAD kinase RD08_RS06895 PF01628 HrcA protein C terminal domain RD08_RS06895 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RD08_RS06900 PF00762 Ferrochelatase RD08_RS06910 PF01025 GrpE RD08_RS06920 PF00012 Hsp70 protein RD08_RS06925 PF00226 DnaJ domain RD08_RS06925 PF00684 DnaJ central domain RD08_RS06925 PF01556 DnaJ C terminal domain RD08_RS06930 PF00675 Insulinase (Peptidase family M16) RD08_RS06930 PF05193 Peptidase M16 inactive domain RD08_RS06940 PF13420 Acetyltransferase (GNAT) domain RD08_RS06945 PF05762 VWA domain containing CoxE-like protein RD08_RS06950 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS06955 PF00665 Integrase core domain RD08_RS06955 PF13011 RD08_RS06955 RD08_RS06960 PF00034 Cytochrome c RD08_RS06965 PF00034 Cytochrome c RD08_RS06970 PF08897 RD08_RS06970 RD08_RS06975 PF00180 Isocitrate/isopropylmalate dehydrogenase RD08_RS06980 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD08_RS06985 PF04932 RD08_RS06985 RD08_RS06990 PF00665 Integrase core domain RD08_RS06990 PF13011 RD08_RS06990 RD08_RS06995 PF00072 Response regulator receiver domain RD08_RS06995 PF00486 Transcriptional regulatory protein, C terminal RD08_RS07000 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS07000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS07000 PF02702 Osmosensitive K+ channel His kinase sensor domain RD08_RS07000 PF13492 GAF domain RD08_RS07000 PF13493 Domain of unknown function (DUF4118) RD08_RS07005 PF02669 RD08_RS07005 RD08_RS07010 PF00122 E1-E2 ATPase RD08_RS07010 PF00702 haloacid dehalogenase-like hydrolase RD08_RS07015 PF03814 RD08_RS07015 RD08_RS07020 PF13937 RD08_RS07020 RD08_RS07025 PF00474 Sodium:solute symporter family RD08_RS07030 PF00665 Integrase core domain RD08_RS07030 PF13011 RD08_RS07030 RD08_RS07035 PF00665 Integrase core domain RD08_RS07035 PF13011 RD08_RS07035 RD08_RS07040 PF00893 Small Multidrug Resistance protein RD08_RS07045 PF01713 Smr domain RD08_RS07050 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS07055 PF01580 FtsK/SpoIIIE family RD08_RS07055 PF09397 Ftsk gamma domain RD08_RS07055 PF13491 RD08_RS07055 RD08_RS07060 PF03548 Outer membrane lipoprotein carrier protein LolA RD08_RS07065 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS07065 PF12002 MgsA AAA+ ATPase C terminal RD08_RS07065 PF16193 RD08_RS07065 RD08_RS07070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD08_RS07070 PF02403 Seryl-tRNA synthetase N-terminal domain RD08_RS07095 PF00990 GGDEF domain RD08_RS07105 PF01914 RD08_RS07105 RD08_RS07110 PF00593 TonB dependent receptor RD08_RS07110 PF07715 TonB-dependent Receptor Plug Domain RD08_RS07115 PF07690 Major Facilitator Superfamily RD08_RS07120 PF12833 Helix-turn-helix domain RD08_RS07125 PF00355 Rieske [2Fe-2S] domain RD08_RS07125 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD08_RS07130 PF11575 RD08_RS07130 RD08_RS07135 PF04183 IucA / IucC family RD08_RS07135 PF06276 Ferric iron reductase FhuF-like transporter RD08_RS07140 PF13523 Acetyltransferase (GNAT) domain RD08_RS07145 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RD08_RS07155 PF00999 Sodium/hydrogen exchanger family RD08_RS07160 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS07165 PF00665 Integrase core domain RD08_RS07165 PF13011 RD08_RS07165 RD08_RS07170 PF03883 RD08_RS07170 RD08_RS07175 PF07690 Major Facilitator Superfamily RD08_RS07180 PF12805 RD08_RS07180 RD08_RS07180 PF13515 RD08_RS07180 RD08_RS07185 PF00665 Integrase core domain RD08_RS07185 PF13011 RD08_RS07185 RD08_RS07190 PF00990 GGDEF domain RD08_RS07190 PF13185 GAF domain RD08_RS07195 PF00665 Integrase core domain RD08_RS07195 PF13011 RD08_RS07195 RD08_RS07200 PF06969 HemN C-terminal domain RD08_RS07210 PF00072 Response regulator receiver domain RD08_RS07210 PF00196 Bacterial regulatory proteins, luxR family RD08_RS07215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD08_RS07215 PF02824 TGS domain RD08_RS07215 PF03129 Anticodon binding domain RD08_RS07215 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD08_RS07220 PF00707 Translation initiation factor IF-3, C-terminal domain RD08_RS07220 PF05198 Translation initiation factor IF-3, N-terminal domain RD08_RS07225 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RD08_RS07225 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RD08_RS07230 PF03610 PTS system fructose IIA component RD08_RS07235 PF00381 PTS HPr component phosphorylation site RD08_RS07240 PF00391 PEP-utilising enzyme, mobile domain RD08_RS07240 PF02896 PEP-utilising enzyme, TIM barrel domain RD08_RS07240 PF05524 PEP-utilising enzyme, N-terminal RD08_RS07250 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD08_RS07255 PF13458 Periplasmic binding protein RD08_RS07260 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS07265 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS07270 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS07275 PF00005 ABC transporter RD08_RS07280 PF00665 Integrase core domain RD08_RS07280 PF13011 RD08_RS07280 RD08_RS07285 PF04828 Glutathione-dependent formaldehyde-activating enzyme RD08_RS07290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD08_RS07290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS07295 PF09723 RD08_RS07295 RD08_RS07300 PF02293 AmiS/UreI family transporter RD08_RS07305 PF03069 Acetamidase/Formamidase family RD08_RS07310 PF00196 Bacterial regulatory proteins, luxR family RD08_RS07320 PF01116 Fructose-bisphosphate aldolase class-II RD08_RS07325 PF04828 Glutathione-dependent formaldehyde-activating enzyme RD08_RS07330 PF01259 SAICAR synthetase RD08_RS07335 PF15723 RD08_RS07335 RD08_RS07340 PF15731 RD08_RS07340 RD08_RS07345 PF02600 Disulfide bond formation protein DsbB RD08_RS07350 PF00731 AIR carboxylase RD08_RS07355 PF02222 ATP-grasp domain RD08_RS07360 PF01300 Telomere recombination RD08_RS07360 PF03481 Putative GTP-binding controlling metal-binding RD08_RS07365 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS07370 PF01614 Bacterial transcriptional regulator RD08_RS07370 PF09339 IclR helix-turn-helix domain RD08_RS07375 PF00491 Arginase family RD08_RS07380 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS07385 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS07390 PF00005 ABC transporter RD08_RS07395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS07395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS07400 PF01575 MaoC like domain RD08_RS07405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS07405 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS07405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS07410 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS07410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS07410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS07415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07415 PF03466 LysR substrate binding domain RD08_RS07420 PF00589 Phage integrase family RD08_RS07420 PF02899 Phage integrase, N-terminal SAM-like domain RD08_RS07425 PF04073 Aminoacyl-tRNA editing domain RD08_RS07430 PF01965 DJ-1/PfpI family RD08_RS07435 PF13467 Ribbon-helix-helix domain RD08_RS07440 PF00665 Integrase core domain RD08_RS07440 PF13011 RD08_RS07440 RD08_RS07445 PF00768 D-alanyl-D-alanine carboxypeptidase RD08_RS07455 PF07690 Major Facilitator Superfamily RD08_RS07460 PF12705 PD-(D/E)XK nuclease superfamily RD08_RS07465 PF00580 UvrD/REP helicase N-terminal domain RD08_RS07465 PF12705 PD-(D/E)XK nuclease superfamily RD08_RS07465 PF13361 UvrD-like helicase C-terminal domain RD08_RS07475 PF12169 DNA polymerase III subunits gamma and tau domain III RD08_RS07475 PF13177 DNA polymerase III, delta subunit RD08_RS07480 PF02575 YbaB/EbfC DNA-binding family RD08_RS07485 PF02132 RecR protein RD08_RS07485 PF13662 Toprim domain RD08_RS07490 PF00665 Integrase core domain RD08_RS07490 PF13011 RD08_RS07490 RD08_RS07505 PF04228 RD08_RS07505 RD08_RS07510 PF01300 Telomere recombination RD08_RS07515 PF00665 Integrase core domain RD08_RS07515 PF13011 RD08_RS07515 RD08_RS07520 PF00665 Integrase core domain RD08_RS07520 PF13011 RD08_RS07520 RD08_RS07525 PF07433 RD08_RS07525 RD08_RS07530 PF09375 Imelysin RD08_RS07535 PF06537 RD08_RS07535 RD08_RS07540 PF09375 Imelysin RD08_RS07550 PF03358 NADPH-dependent FMN reductase RD08_RS07555 PF07311 Dodecin RD08_RS07560 PF00488 MutS domain V RD08_RS07560 PF01624 MutS domain I RD08_RS07560 PF05188 MutS domain II RD08_RS07560 PF05190 MutS family domain IV RD08_RS07560 PF05192 MutS domain III RD08_RS07565 PF08007 Cupin superfamily protein RD08_RS07570 PF16970 RD08_RS07570 RD08_RS07575 PF06804 NlpB/DapX lipoprotein RD08_RS07580 PF00701 Dihydrodipicolinate synthetase family RD08_RS07590 PF00665 Integrase core domain RD08_RS07590 PF13011 RD08_RS07590 RD08_RS07595 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS07600 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS07605 PF00005 ABC transporter RD08_RS07610 PF02824 TGS domain RD08_RS07610 PF04607 Region found in RelA / SpoT proteins RD08_RS07610 PF13291 ACT domain RD08_RS07610 PF13328 HD domain RD08_RS07615 PF01192 RNA polymerase Rpb6 RD08_RS07620 PF00625 Guanylate kinase RD08_RS07625 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD08_RS07630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD08_RS07635 PF00106 short chain dehydrogenase RD08_RS07640 PF00877 NlpC/P60 family RD08_RS07645 PF01048 Phosphorylase superfamily RD08_RS07645 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RD08_RS07650 PF01381 Helix-turn-helix RD08_RS07665 PF03755 RD08_RS07665 RD08_RS07665 PF08340 RD08_RS07665 RD08_RS07670 PF01138 3' exoribonuclease family, domain 1 RD08_RS07670 PF03725 3' exoribonuclease family, domain 2 RD08_RS07675 PF03972 MmgE/PrpD family RD08_RS07680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07680 PF03466 LysR substrate binding domain RD08_RS07685 PF00563 EAL domain RD08_RS07685 PF00990 GGDEF domain RD08_RS07690 PF01725 Ham1 family RD08_RS07695 PF00665 Integrase core domain RD08_RS07695 PF13011 RD08_RS07695 RD08_RS07700 PF04055 Radical SAM superfamily RD08_RS07700 PF06969 HemN C-terminal domain RD08_RS07705 PF00120 Glutamine synthetase, catalytic domain RD08_RS07705 PF03951 Glutamine synthetase, beta-Grasp domain RD08_RS07710 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS07710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS07710 PF08448 PAS fold RD08_RS07715 PF00072 Response regulator receiver domain RD08_RS07715 PF00158 Sigma-54 interaction domain RD08_RS07715 PF02954 Bacterial regulatory protein, Fis family RD08_RS07720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07720 PF03466 LysR substrate binding domain RD08_RS07725 PF02678 Pirin RD08_RS07730 PF02678 Pirin RD08_RS07730 PF05726 Pirin C-terminal cupin domain RD08_RS07735 PF00665 Integrase core domain RD08_RS07735 PF13011 RD08_RS07735 RD08_RS07740 PF00005 ABC transporter RD08_RS07745 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS07750 PF13343 Bacterial extracellular solute-binding protein RD08_RS07755 PF00175 Oxidoreductase NAD-binding domain RD08_RS07755 PF00970 Oxidoreductase FAD-binding domain RD08_RS07760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07760 PF03466 LysR substrate binding domain RD08_RS07770 PF00248 Aldo/keto reductase family RD08_RS07780 PF01042 Endoribonuclease L-PSP RD08_RS07785 PF00270 DEAD/DEAH box helicase RD08_RS07785 PF00271 Helicase conserved C-terminal domain RD08_RS07785 PF17191 RD08_RS07785 RD08_RS07790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07790 PF03466 LysR substrate binding domain RD08_RS07795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS07795 PF03466 LysR substrate binding domain RD08_RS07800 PF00171 Aldehyde dehydrogenase family RD08_RS07805 PF00210 Ferritin-like domain RD08_RS07825 PF01061 RD08_RS07825 RD08_RS07830 PF00005 ABC transporter RD08_RS07835 PF02706 Chain length determinant protein RD08_RS07840 PF00534 Glycosyl transferases group 1 RD08_RS07840 PF13439 Glycosyltransferase Family 4 RD08_RS07850 PF02563 Polysaccharide biosynthesis/export protein RD08_RS07850 PF10531 SLBB domain RD08_RS07855 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD08_RS07855 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD08_RS07855 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD08_RS07860 PF01370 NAD dependent epimerase/dehydratase family RD08_RS07865 PF05159 RD08_RS07865 RD08_RS07870 PF05159 RD08_RS07870 RD08_RS07875 PF00665 Integrase core domain RD08_RS07875 PF13011 RD08_RS07875 RD08_RS07880 PF00106 short chain dehydrogenase RD08_RS07885 PF00884 Sulfatase RD08_RS07890 PF00665 Integrase core domain RD08_RS07890 PF13011 RD08_RS07890 RD08_RS07895 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS07895 PF14759 Reductase C-terminal RD08_RS07900 PF00440 Bacterial regulatory proteins, tetR family RD08_RS07905 PF00005 ABC transporter RD08_RS07910 PF00005 ABC transporter RD08_RS07910 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS07920 PF00665 Integrase core domain RD08_RS07920 PF13011 RD08_RS07920 RD08_RS07925 PF03741 RD08_RS07925 RD08_RS07930 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS07935 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS07940 PF13557 RD08_RS07940 RD08_RS07950 PF07726 ATPase family associated with various cellular activities (AAA) RD08_RS07955 PF01882 RD08_RS07955 RD08_RS07960 PF00092 von Willebrand factor type A domain RD08_RS07965 PF00092 von Willebrand factor type A domain RD08_RS07965 PF07719 Tetratricopeptide repeat RD08_RS07970 PF13584 RD08_RS07970 RD08_RS07975 PF12710 haloacid dehalogenase-like hydrolase RD08_RS07980 PF00884 Sulfatase RD08_RS07990 PF00665 Integrase core domain RD08_RS07990 PF13011 RD08_RS07990 RD08_RS08000 PF07695 RD08_RS08000 RD08_RS08005 PF00072 Response regulator receiver domain RD08_RS08005 PF00196 Bacterial regulatory proteins, luxR family RD08_RS08010 PF03797 Autotransporter beta-domain RD08_RS08010 PF12951 RD08_RS08010 RD08_RS08015 PF01381 Helix-turn-helix RD08_RS08020 PF06296 RD08_RS08020 RD08_RS08025 PF02798 Glutathione S-transferase, N-terminal domain RD08_RS08025 PF14497 Glutathione S-transferase, C-terminal domain RD08_RS08030 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD08_RS08035 PF03466 LysR substrate binding domain RD08_RS08040 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08045 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS08050 PF01070 FMN-dependent dehydrogenase RD08_RS08055 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD08_RS08060 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS08065 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS08070 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS08075 PF03466 LysR substrate binding domain RD08_RS08080 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08095 PF00665 Integrase core domain RD08_RS08095 PF13011 RD08_RS08095 RD08_RS08105 PF03358 NADPH-dependent FMN reductase RD08_RS08115 PF07690 Major Facilitator Superfamily RD08_RS08120 PF12840 Helix-turn-helix domain RD08_RS08130 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08135 PF00106 short chain dehydrogenase RD08_RS08140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS08140 PF03466 LysR substrate binding domain RD08_RS08150 PF00665 Integrase core domain RD08_RS08150 PF13011 RD08_RS08150 RD08_RS08155 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08160 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RD08_RS08160 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD08_RS08160 PF04039 RD08_RS08160 RD08_RS08160 PF13244 RD08_RS08160 RD08_RS08165 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD08_RS08170 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RD08_RS08175 PF01899 RD08_RS08175 RD08_RS08180 PF04066 RD08_RS08180 RD08_RS08185 PF03334 RD08_RS08185 RD08_RS08190 PF00665 Integrase core domain RD08_RS08190 PF13011 RD08_RS08190 RD08_RS08200 PF12710 haloacid dehalogenase-like hydrolase RD08_RS08205 PF14437 RD08_RS08205 RD08_RS08210 PF02016 LD-carboxypeptidase RD08_RS08215 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS08220 PF06808 RD08_RS08220 RD08_RS08225 PF04290 RD08_RS08225 RD08_RS08230 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS08235 PF00005 ABC transporter RD08_RS08235 PF12848 ABC transporter RD08_RS08240 PF00005 ABC transporter RD08_RS08245 PF09084 NMT1/THI5 like RD08_RS08250 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS08255 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS08260 PF00665 Integrase core domain RD08_RS08260 PF13011 RD08_RS08260 RD08_RS08265 PF09424 Yqey-like protein RD08_RS08270 PF00042 Globin RD08_RS08270 PF00175 Oxidoreductase NAD-binding domain RD08_RS08270 PF00970 Oxidoreductase FAD-binding domain RD08_RS08275 PF02082 Transcriptional regulator RD08_RS08280 PF01266 FAD dependent oxidoreductase RD08_RS08290 PF00665 Integrase core domain RD08_RS08290 PF13011 RD08_RS08290 RD08_RS08300 PF02618 YceG-like family RD08_RS08305 PF02223 Thymidylate kinase RD08_RS08310 PF13177 DNA polymerase III, delta subunit RD08_RS08315 PF01026 TatD related DNase RD08_RS08320 PF12796 Ankyrin repeats (3 copies) RD08_RS08325 PF01614 Bacterial transcriptional regulator RD08_RS08325 PF09339 IclR helix-turn-helix domain RD08_RS08330 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS08340 PF00005 ABC transporter RD08_RS08350 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD08_RS08350 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD08_RS08355 PF00171 Aldehyde dehydrogenase family RD08_RS08360 PF01546 Peptidase family M20/M25/M40 RD08_RS08360 PF07687 Peptidase dimerisation domain RD08_RS08365 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS08365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS08365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS08370 PF03328 HpcH/HpaI aldolase/citrate lyase family RD08_RS08375 PF06808 RD08_RS08375 RD08_RS08380 PF04290 RD08_RS08380 RD08_RS08385 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS08390 PF00392 Bacterial regulatory proteins, gntR family RD08_RS08390 PF07729 FCD domain RD08_RS08395 PF00665 Integrase core domain RD08_RS08395 PF13011 RD08_RS08395 RD08_RS08400 PF04343 RD08_RS08400 RD08_RS08405 PF00665 Integrase core domain RD08_RS08420 PF01425 Amidase RD08_RS08425 PF07286 Protein of unknown function (DUF1445) RD08_RS08430 PF00563 EAL domain RD08_RS08435 PF00072 Response regulator receiver domain RD08_RS08435 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS08435 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS08435 PF00989 PAS fold RD08_RS08435 PF01627 Hpt domain RD08_RS08435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS08440 PF00072 Response regulator receiver domain RD08_RS08440 PF00196 Bacterial regulatory proteins, luxR family RD08_RS08445 PF05594 RD08_RS08445 RD08_RS08445 PF05860 haemagglutination activity domain RD08_RS08445 PF13018 RD08_RS08445 RD08_RS08445 PF13332 RD08_RS08445 RD08_RS08450 PF16970 RD08_RS08450 RD08_RS08455 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RD08_RS08455 PF02753 Pili assembly chaperone PapD, C-terminal domain RD08_RS08460 PF00577 Outer membrane usher protein RD08_RS08460 PF13953 PapC C-terminal domain RD08_RS08460 PF13954 PapC N-terminal domain RD08_RS08470 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD08_RS08470 PF08479 POTRA domain, ShlB-type RD08_RS08480 PF04290 RD08_RS08480 RD08_RS08485 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS08495 PF04290 RD08_RS08495 RD08_RS08500 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS08510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS08510 PF03466 LysR substrate binding domain RD08_RS08515 PF13463 Winged helix DNA-binding domain RD08_RS08520 PF01968 Hydantoinase/oxoprolinase RD08_RS08520 PF02538 RD08_RS08520 RD08_RS08520 PF05378 RD08_RS08520 RD08_RS08525 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase RD08_RS08535 PF00924 Mechanosensitive ion channel RD08_RS08540 PF01614 Bacterial transcriptional regulator RD08_RS08540 PF09339 IclR helix-turn-helix domain RD08_RS08545 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08550 PF00588 SpoU rRNA Methylase family RD08_RS08555 PF00459 Inositol monophosphatase family RD08_RS08560 PF00571 CBS domain RD08_RS08560 PF03471 Transporter associated domain RD08_RS08560 PF03741 RD08_RS08560 RD08_RS08565 PF02673 RD08_RS08565 RD08_RS08570 PF00149 Calcineurin-like phosphoesterase RD08_RS08575 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RD08_RS08580 PF14559 Tetratricopeptide repeat RD08_RS08585 PF01406 tRNA synthetases class I (C) catalytic domain RD08_RS08585 PF09190 DALR domain RD08_RS08590 PF00730 HhH-GPD superfamily base excision DNA repair protein RD08_RS08595 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RD08_RS08600 PF00665 Integrase core domain RD08_RS08600 PF13011 RD08_RS08600 RD08_RS08605 PF01171 PP-loop family RD08_RS08605 PF09179 TilS substrate binding domain RD08_RS08610 PF00696 Amino acid kinase family RD08_RS08610 PF01842 ACT domain RD08_RS08610 PF13840 ACT domain RD08_RS08620 PF01548 RD08_RS08620 RD08_RS08620 PF02371 RD08_RS08620 RD08_RS08625 PF07883 Cupin domain RD08_RS08630 PF07978 NIPSNAP RD08_RS08635 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS08635 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS08640 PF04290 RD08_RS08640 RD08_RS08645 PF06808 RD08_RS08645 RD08_RS08650 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS08655 PF00561 alpha/beta hydrolase fold RD08_RS08660 PF01958 Domain of unknown function DUF108 RD08_RS08660 PF03447 Homoserine dehydrogenase, NAD binding domain RD08_RS08665 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS08670 PF00440 Bacterial regulatory proteins, tetR family RD08_RS08675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS08675 PF03466 LysR substrate binding domain RD08_RS08680 PF13416 Bacterial extracellular solute-binding protein RD08_RS08685 PF07969 Amidohydrolase family RD08_RS08690 PF07969 Amidohydrolase family RD08_RS08695 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS08700 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS08705 PF00005 ABC transporter RD08_RS08705 PF08402 TOBE domain RD08_RS08715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD08_RS08720 PF01614 Bacterial transcriptional regulator RD08_RS08720 PF09339 IclR helix-turn-helix domain RD08_RS08725 PF13380 CoA binding domain RD08_RS08725 PF13549 ATP-grasp domain RD08_RS08725 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS08730 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS08735 PF01042 Endoribonuclease L-PSP RD08_RS08740 PF01575 MaoC like domain RD08_RS08745 PF01575 MaoC like domain RD08_RS08755 PF12840 Helix-turn-helix domain RD08_RS08760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD08_RS08770 PF13641 Glycosyltransferase like family 2 RD08_RS08775 PF01522 Polysaccharide deacetylase RD08_RS08775 PF14883 Hypothetical glycosyl hydrolase family 13 RD08_RS08780 PF13432 Tetratricopeptide repeat RD08_RS08780 PF14559 Tetratricopeptide repeat RD08_RS08795 PF13463 Winged helix DNA-binding domain RD08_RS08800 PF00665 Integrase core domain RD08_RS08800 PF13011 RD08_RS08800 RD08_RS08805 PF00196 Bacterial regulatory proteins, luxR family RD08_RS08810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD08_RS08810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD08_RS08810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD08_RS08810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD08_RS08815 PF00342 Phosphoglucose isomerase RD08_RS08820 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS08825 PF07690 Major Facilitator Superfamily RD08_RS08830 PF02146 Sir2 family RD08_RS08835 PF00459 Inositol monophosphatase family RD08_RS08840 PF00171 Aldehyde dehydrogenase family RD08_RS08845 PF00202 Aminotransferase class-III RD08_RS08850 PF00155 Aminotransferase class I and II RD08_RS08850 PF00392 Bacterial regulatory proteins, gntR family RD08_RS08855 PF01904 Protein of unknown function DUF72 RD08_RS08860 PF00580 UvrD/REP helicase N-terminal domain RD08_RS08860 PF13361 UvrD-like helicase C-terminal domain RD08_RS08865 PF01544 CorA-like Mg2+ transporter protein RD08_RS08870 PF00565 Staphylococcal nuclease homologue RD08_RS08875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS08880 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS08885 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS08890 PF00005 ABC transporter RD08_RS08890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS08895 PF12802 MarR family RD08_RS08900 PF00665 Integrase core domain RD08_RS08900 PF13011 RD08_RS08900 RD08_RS08910 PF08479 POTRA domain, ShlB-type RD08_RS08915 PF03707 RD08_RS08915 RD08_RS08920 PF04964 RD08_RS08920 RD08_RS08925 PF01478 Type IV leader peptidase family RD08_RS08930 PF07811 RD08_RS08930 RD08_RS08935 PF07811 RD08_RS08935 RD08_RS08940 PF08666 SAF domain RD08_RS08940 PF16976 RD08_RS08940 RD08_RS08945 PF00263 RD08_RS08945 RD08_RS08945 PF13629 RD08_RS08945 RD08_RS08955 PF00437 Type II/IV secretion system protein RD08_RS08960 PF00482 Type II secretion system (T2SS), protein F RD08_RS08965 PF00482 Type II secretion system (T2SS), protein F RD08_RS08970 PF13432 Tetratricopeptide repeat RD08_RS08980 PF09977 RD08_RS08980 RD08_RS08985 PF00158 Sigma-54 interaction domain RD08_RS08985 PF02954 Bacterial regulatory protein, Fis family RD08_RS08990 PF11180 RD08_RS08990 RD08_RS08995 PF06676 RD08_RS08995 RD08_RS09000 PF04542 Sigma-70 region 2 RD08_RS09000 PF08281 Sigma-70, region 4 RD08_RS09005 PF13668 Ferritin-like domain RD08_RS09010 PF00034 Cytochrome c RD08_RS09015 PF01132 Elongation factor P (EF-P) OB domain RD08_RS09015 PF08207 Elongation factor P (EF-P) KOW-like domain RD08_RS09015 PF09285 Elongation factor P, C-terminal RD08_RS09020 PF10093 RD08_RS09020 RD08_RS09025 PF11062 RD08_RS09025 RD08_RS09030 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RD08_RS09035 PF00330 Aconitase family (aconitate hydratase) RD08_RS09035 PF00694 Aconitase C-terminal domain RD08_RS09045 PF00593 TonB dependent receptor RD08_RS09045 PF07715 TonB-dependent Receptor Plug Domain RD08_RS09050 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS09055 PF00665 Integrase core domain RD08_RS09055 PF13011 RD08_RS09055 RD08_RS09060 PF00691 OmpA family RD08_RS09070 PF00330 Aconitase family (aconitate hydratase) RD08_RS09070 PF06434 Aconitate hydratase 2 N-terminus RD08_RS09070 PF11791 Aconitate B N-terminal domain RD08_RS09075 PF00929 Exonuclease RD08_RS09080 PF12643 RD08_RS09080 RD08_RS09085 PF03992 Antibiotic biosynthesis monooxygenase RD08_RS09090 PF03795 YCII-related domain RD08_RS09095 PF00892 EamA-like transporter family RD08_RS09100 PF01925 RD08_RS09100 RD08_RS09110 PF00665 Integrase core domain RD08_RS09110 PF13011 RD08_RS09110 RD08_RS09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS09115 PF03466 LysR substrate binding domain RD08_RS09120 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RD08_RS09120 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RD08_RS09130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS09130 PF03466 LysR substrate binding domain RD08_RS09165 PF03212 Pertactin RD08_RS09165 PF03797 Autotransporter beta-domain RD08_RS09170 PF02545 Maf-like protein RD08_RS09175 PF02590 Predicted SPOUT methyltransferase RD08_RS09180 PF02410 Oligomerisation domain RD08_RS09185 PF01467 Cytidylyltransferase RD08_RS09190 PF01218 Coproporphyrinogen III oxidase RD08_RS09195 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RD08_RS09195 PF02843 Phosphoribosylglycinamide synthetase, C domain RD08_RS09195 PF02844 Phosphoribosylglycinamide synthetase, N domain RD08_RS09200 PF01709 Transcriptional regulator RD08_RS09205 PF05872 RD08_RS09205 RD08_RS09210 PF01235 RD08_RS09210 RD08_RS09215 PF00202 Aminotransferase class-III RD08_RS09220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS09225 PF00171 Aldehyde dehydrogenase family RD08_RS09230 PF00892 EamA-like transporter family RD08_RS09235 PF01546 Peptidase family M20/M25/M40 RD08_RS09235 PF07687 Peptidase dimerisation domain RD08_RS09240 PF00850 Histone deacetylase domain RD08_RS09245 PF07883 Cupin domain RD08_RS09250 PF00202 Aminotransferase class-III RD08_RS09255 PF00665 Integrase core domain RD08_RS09255 PF13011 RD08_RS09255 RD08_RS09260 PF00005 ABC transporter RD08_RS09260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS09265 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS09265 PF12911 RD08_RS09265 RD08_RS09270 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS09275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS09280 PF00155 Aminotransferase class I and II RD08_RS09280 PF00392 Bacterial regulatory proteins, gntR family RD08_RS09285 PF00180 Isocitrate/isopropylmalate dehydrogenase RD08_RS09290 PF07690 Major Facilitator Superfamily RD08_RS09295 PF13437 HlyD family secretion protein RD08_RS09295 PF13533 Biotin-lipoyl like RD08_RS09305 PF01047 MarR family RD08_RS09310 PF00892 EamA-like transporter family RD08_RS09315 PF00892 EamA-like transporter family RD08_RS09320 PF00107 Zinc-binding dehydrogenase RD08_RS09320 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS09325 PF01435 Peptidase family M48 RD08_RS09335 PF00581 Rhodanese-like domain RD08_RS09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS09345 PF03466 LysR substrate binding domain RD08_RS09350 PF00005 ABC transporter RD08_RS09355 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS09360 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS09365 PF13343 Bacterial extracellular solute-binding protein RD08_RS09370 PF01266 FAD dependent oxidoreductase RD08_RS09375 PF00665 Integrase core domain RD08_RS09375 PF13011 RD08_RS09375 RD08_RS09380 PF13343 Bacterial extracellular solute-binding protein RD08_RS09390 PF00860 Permease family RD08_RS09395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD08_RS09395 PF00672 HAMP domain RD08_RS09395 PF02203 Tar ligand binding domain homologue RD08_RS09400 PF01272 Transcription elongation factor, GreA/GreB, C-term RD08_RS09400 PF03449 Transcription elongation factor, N-terminal RD08_RS09405 PF00665 Integrase core domain RD08_RS09405 PF13011 RD08_RS09405 RD08_RS09410 PF05932 Tir chaperone protein (CesT) family RD08_RS09415 PF09392 Type III secretion needle MxiH like RD08_RS09430 PF00771 FHIPEP family RD08_RS09440 PF09474 RD08_RS09440 RD08_RS09450 PF07201 HrpJ-like domain RD08_RS09450 PF09059 TyeA RD08_RS09475 PF04888 RD08_RS09475 RD08_RS09490 PF17001 RD08_RS09490 RD08_RS09495 PF01514 Secretory protein of YscJ/FliF family RD08_RS09500 PF06578 RD08_RS09500 RD08_RS09505 PF06635 RD08_RS09505 RD08_RS09510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD08_RS09510 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD08_RS09515 PF07321 Type III secretion protein YscO RD08_RS09525 PF01052 Surface presentation of antigens (SPOA) RD08_RS09530 PF00813 RD08_RS09530 RD08_RS09535 PF01313 RD08_RS09535 RD08_RS09540 PF01311 RD08_RS09540 RD08_RS09545 PF01312 FlhB HrpN YscU SpaS Family RD08_RS09550 PF05932 Tir chaperone protein (CesT) family RD08_RS09555 PF00263 RD08_RS09555 RD08_RS09555 PF03958 Bacterial type II/III secretion system short domain RD08_RS09560 PF04542 Sigma-70 region 2 RD08_RS09560 PF08281 Sigma-70, region 4 RD08_RS09580 PF04392 ABC transporter substrate binding protein RD08_RS09585 PF00672 HAMP domain RD08_RS09585 PF07228 Stage II sporulation protein E (SpoIIE) RD08_RS09585 PF08269 Cache domain RD08_RS09590 PF07690 Major Facilitator Superfamily RD08_RS09595 PF00842 Alanine racemase, C-terminal domain RD08_RS09595 PF01168 Alanine racemase, N-terminal domain RD08_RS09600 PF13581 Histidine kinase-like ATPase domain RD08_RS09605 PF01740 STAS domain RD08_RS09610 PF13091 PLD-like domain RD08_RS09610 PF13396 RD08_RS09610 RD08_RS09620 PF03212 Pertactin RD08_RS09620 PF03797 Autotransporter beta-domain RD08_RS09620 PF12951 RD08_RS09620 RD08_RS09630 PF00665 Integrase core domain RD08_RS09630 PF13011 RD08_RS09630 RD08_RS09635 PF06808 RD08_RS09635 RD08_RS09635 PF11874 RD08_RS09635 RD08_RS09640 PF16868 RD08_RS09640 RD08_RS09645 PF00202 Aminotransferase class-III RD08_RS09650 PF01380 SIS domain RD08_RS09650 PF01418 Helix-turn-helix domain, rpiR family RD08_RS09655 PF01047 MarR family RD08_RS09660 PF00583 Acetyltransferase (GNAT) family RD08_RS09665 PF00665 Integrase core domain RD08_RS09665 PF13011 RD08_RS09665 RD08_RS09670 PF01205 Uncharacterized protein family UPF0029 RD08_RS09670 PF09186 Domain of unknown function (DUF1949) RD08_RS09675 PF00085 Thioredoxin RD08_RS09685 PF00860 Permease family RD08_RS09690 PF00814 Glycoprotease family RD08_RS09695 PF01548 RD08_RS09695 RD08_RS09695 PF02371 RD08_RS09695 RD08_RS09700 PF02660 RD08_RS09700 RD08_RS09705 PF01975 Survival protein SurE RD08_RS09710 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RD08_RS09715 PF01476 LysM domain RD08_RS09715 PF01551 Peptidase family M23 RD08_RS09720 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RD08_RS09730 PF09694 RD08_RS09730 RD08_RS09735 PF05958 tRNA (Uracil-5-)-methyltransferase RD08_RS09740 PF00376 MerR family regulatory protein RD08_RS09740 PF09278 MerR, DNA binding RD08_RS09745 PF00403 Heavy-metal-associated domain RD08_RS09750 PF00462 Glutaredoxin RD08_RS09750 PF08534 Redoxin RD08_RS09755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS09755 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS09760 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ RD08_RS09765 PF03009 Glycerophosphoryl diester phosphodiesterase family RD08_RS09770 PF13145 PPIC-type PPIASE domain RD08_RS09770 PF13624 SurA N-terminal domain RD08_RS09775 PF13472 GDSL-like Lipase/Acylhydrolase family RD08_RS09780 PF00005 ABC transporter RD08_RS09785 PF00665 Integrase core domain RD08_RS09785 PF13011 RD08_RS09785 RD08_RS09790 PF00665 Integrase core domain RD08_RS09790 PF13011 RD08_RS09790 RD08_RS09795 PF00665 Integrase core domain RD08_RS09795 PF13011 RD08_RS09795 RD08_RS09800 PF04972 BON domain RD08_RS09805 PF07043 RD08_RS09805 RD08_RS09810 PF05532 CsbD-like RD08_RS09815 PF02222 ATP-grasp domain RD08_RS09815 PF02875 Mur ligase family, glutamate ligase domain RD08_RS09815 PF08245 Mur ligase middle domain RD08_RS09815 PF08443 RimK-like ATP-grasp domain RD08_RS09820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS09820 PF02875 Mur ligase family, glutamate ligase domain RD08_RS09820 PF08245 Mur ligase middle domain RD08_RS09830 PF08909 RD08_RS09830 RD08_RS09835 PF04339 RD08_RS09835 RD08_RS09840 PF04305 RD08_RS09840 RD08_RS09845 PF01471 Putative peptidoglycan binding domain RD08_RS09845 PF13406 Transglycosylase SLT domain RD08_RS09850 PF06078 Bacterial protein of unknown function (DUF937) RD08_RS09855 PF00665 Integrase core domain RD08_RS09855 PF13011 RD08_RS09855 RD08_RS09860 PF01037 AsnC family RD08_RS09860 PF13412 Winged helix-turn-helix DNA-binding RD08_RS09870 PF02441 Flavoprotein RD08_RS09870 PF04127 DNA / pantothenate metabolism flavoprotein RD08_RS09875 PF01252 RD08_RS09875 RD08_RS09880 PF00133 tRNA synthetases class I (I, L, M and V) RD08_RS09880 PF06827 Zinc finger found in FPG and IleRS RD08_RS09880 PF08264 Anticodon-binding domain of tRNA RD08_RS09885 PF01687 Riboflavin kinase RD08_RS09885 PF06574 FAD synthetase RD08_RS09890 PF01189 NOL1/NOP2/sun family RD08_RS09895 PF00665 Integrase core domain RD08_RS09895 PF13011 RD08_RS09895 RD08_RS09905 PF00487 RD08_RS09905 RD08_RS09905 PF01610 RD08_RS09905 RD08_RS09910 PF00580 UvrD/REP helicase N-terminal domain RD08_RS09910 PF13361 UvrD-like helicase C-terminal domain RD08_RS09915 PF07715 TonB-dependent Receptor Plug Domain RD08_RS09920 PF00005 ABC transporter RD08_RS09920 PF12848 ABC transporter RD08_RS09925 PF05175 Methyltransferase small domain RD08_RS09930 PF01546 Peptidase family M20/M25/M40 RD08_RS09930 PF07687 Peptidase dimerisation domain RD08_RS09935 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS09935 PF14602 Hexapeptide repeat of succinyl-transferase RD08_RS09935 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RD08_RS09950 PF13663 RD08_RS09950 RD08_RS09955 PF03797 Autotransporter beta-domain RD08_RS09970 PF00313 'Cold-shock' DNA-binding domain RD08_RS09975 PF06041 Bacterial protein of unknown function (DUF924) RD08_RS09980 PF00313 'Cold-shock' DNA-binding domain RD08_RS09985 PF03350 RD08_RS09985 RD08_RS09990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD08_RS09990 PF05697 Bacterial trigger factor protein (TF) RD08_RS09990 PF05698 Bacterial trigger factor protein (TF) C-terminus RD08_RS09995 PF00574 Clp protease RD08_RS10000 PF06689 ClpX C4-type zinc finger RD08_RS10000 PF07724 AAA domain (Cdc48 subfamily) RD08_RS10000 PF10431 C-terminal, D2-small domain, of ClpB protein RD08_RS10005 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS10005 PF02190 ATP-dependent protease La (LON) domain RD08_RS10005 PF05362 Lon protease (S16) C-terminal proteolytic domain RD08_RS10010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS10010 PF03466 LysR substrate binding domain RD08_RS10015 PF02515 CoA-transferase family III RD08_RS10020 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS10025 PF01575 MaoC like domain RD08_RS10030 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS10035 PF01796 RD08_RS10035 RD08_RS10035 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) RD08_RS10040 PF02803 Thiolase, C-terminal domain RD08_RS10045 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS10050 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS10050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS10060 PF01144 Coenzyme A transferase RD08_RS10065 PF01144 Coenzyme A transferase RD08_RS10070 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS10075 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS10080 PF00665 Integrase core domain RD08_RS10080 PF13011 RD08_RS10080 RD08_RS10090 PF03797 Autotransporter beta-domain RD08_RS10095 PF00717 Peptidase S24-like RD08_RS10095 PF01726 LexA DNA binding domain RD08_RS10100 PF00155 Aminotransferase class I and II RD08_RS10105 PF00271 Helicase conserved C-terminal domain RD08_RS10105 PF02151 UvrB/uvrC motif RD08_RS10105 PF04851 Type III restriction enzyme, res subunit RD08_RS10105 PF12344 Ultra-violet resistance protein B RD08_RS10110 PF01451 Low molecular weight phosphotyrosine protein phosphatase RD08_RS10115 PF02082 Transcriptional regulator RD08_RS10120 PF00266 Aminotransferase class-V RD08_RS10125 PF01592 NifU-like N terminal domain RD08_RS10130 PF01521 Iron-sulphur cluster biosynthesis RD08_RS10135 PF07743 HSCB C-terminal oligomerisation domain RD08_RS10140 PF00012 Hsp70 protein RD08_RS10145 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS10150 PF04384 Iron-sulphur cluster assembly RD08_RS10160 PF00665 Integrase core domain RD08_RS10160 PF13011 RD08_RS10160 RD08_RS10165 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS10170 PF00665 Integrase core domain RD08_RS10170 PF13011 RD08_RS10170 RD08_RS10175 PF03812 RD08_RS10175 RD08_RS10180 PF07005 Protein of unknown function, DUF1537 RD08_RS10180 PF17042 RD08_RS10180 RD08_RS10185 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD08_RS10190 PF00392 Bacterial regulatory proteins, gntR family RD08_RS10190 PF07702 UTRA domain RD08_RS10195 PF03473 MOSC domain RD08_RS10195 PF03476 MOSC N-terminal beta barrel domain RD08_RS10200 PF02261 Aspartate decarboxylase RD08_RS10205 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS10205 PF00175 Oxidoreductase NAD-binding domain RD08_RS10205 PF00970 Oxidoreductase FAD-binding domain RD08_RS10210 PF01266 FAD dependent oxidoreductase RD08_RS10215 PF13416 Bacterial extracellular solute-binding protein RD08_RS10220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS10220 PF03466 LysR substrate binding domain RD08_RS10225 PF07287 RD08_RS10225 RD08_RS10235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS10240 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS10245 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS10245 PF12911 RD08_RS10245 RD08_RS10250 PF00005 ABC transporter RD08_RS10250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS10255 PF01425 Amidase RD08_RS10270 PF06864 RD08_RS10270 RD08_RS10280 PF00437 Type II/IV secretion system protein RD08_RS10290 PF08805 PilS N terminal RD08_RS10300 PF01411 tRNA synthetases class II (A) RD08_RS10300 PF02272 DHHA1 domain RD08_RS10300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD08_RS10305 PF01206 Sulfurtransferase TusA RD08_RS10315 PF00886 Ribosomal protein S16 RD08_RS10320 PF01782 RimM N-terminal domain RD08_RS10325 PF01746 tRNA (Guanine-1)-methyltransferase RD08_RS10330 PF00266 Aminotransferase class-V RD08_RS10335 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease RD08_RS10340 PF00665 Integrase core domain RD08_RS10340 PF13011 RD08_RS10340 RD08_RS10345 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS10345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS10350 PF00072 Response regulator receiver domain RD08_RS10355 PF06629 RD08_RS10355 RD08_RS10360 PF00133 tRNA synthetases class I (I, L, M and V) RD08_RS10360 PF08264 Anticodon-binding domain of tRNA RD08_RS10360 PF10458 Valyl tRNA synthetase tRNA binding arm RD08_RS10365 PF00334 Nucleoside diphosphate kinase RD08_RS10370 PF04055 Radical SAM superfamily RD08_RS10375 PF13413 Helix-turn-helix domain RD08_RS10380 PF04551 GcpE protein RD08_RS10385 PF03129 Anticodon binding domain RD08_RS10385 PF13393 Histidyl-tRNA synthetase RD08_RS10390 PF09976 Tetratricopeptide repeat RD08_RS10395 PF13360 PQQ-like domain RD08_RS10400 PF01926 50S ribosome-binding GTPase RD08_RS10400 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RD08_RS10405 PF00155 Aminotransferase class I and II RD08_RS10415 PF01926 50S ribosome-binding GTPase RD08_RS10415 PF13167 RD08_RS10415 RD08_RS10415 PF16360 RD08_RS10415 RD08_RS10420 PF01145 SPFH domain / Band 7 family RD08_RS10420 PF12221 RD08_RS10420 RD08_RS10425 PF01145 SPFH domain / Band 7 family RD08_RS10430 PF13393 Histidyl-tRNA synthetase RD08_RS10435 PF00709 Adenylosuccinate synthetase RD08_RS10440 PF00156 Phosphoribosyl transferase domain RD08_RS10445 PF01165 Ribosomal protein S21 RD08_RS10450 PF01807 CHC2 zinc finger RD08_RS10450 PF08275 DNA primase catalytic core, N-terminal domain RD08_RS10450 PF08278 DNA primase DnaG DnaB-binding RD08_RS10450 PF10410 DnaB-helicase binding domain of primase RD08_RS10450 PF13662 Toprim domain RD08_RS10455 PF00140 Sigma-70 factor, region 1 RD08_RS10455 PF03979 Sigma-70 factor, region 1 RD08_RS10455 PF04539 Sigma-70 region 3 RD08_RS10455 PF04542 Sigma-70 region 2 RD08_RS10455 PF04545 Sigma-70, region 4 RD08_RS10455 PF04546 Sigma-70, non-essential region RD08_RS10475 PF00665 Integrase core domain RD08_RS10475 PF13011 RD08_RS10475 RD08_RS10480 PF00665 Integrase core domain RD08_RS10480 PF13011 RD08_RS10480 RD08_RS10485 PF01594 RD08_RS10485 RD08_RS10490 PF01061 RD08_RS10490 RD08_RS10495 PF00005 ABC transporter RD08_RS10500 PF13527 Acetyltransferase (GNAT) domain RD08_RS10505 PF01925 RD08_RS10505 RD08_RS10520 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RD08_RS10520 PF12801 RD08_RS10520 RD08_RS10520 PF13746 4Fe-4S dicluster domain RD08_RS10525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD08_RS10525 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RD08_RS10535 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO RD08_RS10545 PF03597 RD08_RS10545 RD08_RS10550 PF00122 E1-E2 ATPase RD08_RS10555 PF00665 Integrase core domain RD08_RS10555 PF13011 RD08_RS10555 RD08_RS10560 PF00202 Aminotransferase class-III RD08_RS10565 PF00155 Aminotransferase class I and II RD08_RS10575 PF13500 AAA domain RD08_RS10575 PF13649 Methyltransferase domain RD08_RS10580 PF03788 RD08_RS10580 RD08_RS10585 PF04172 RD08_RS10585 RD08_RS10590 PF00665 Integrase core domain RD08_RS10590 PF13011 RD08_RS10590 RD08_RS10595 PF00665 Integrase core domain RD08_RS10595 PF13011 RD08_RS10595 RD08_RS10600 PF00158 Sigma-54 interaction domain RD08_RS10600 PF01590 GAF domain RD08_RS10600 PF02954 Bacterial regulatory protein, Fis family RD08_RS10605 PF00171 Aldehyde dehydrogenase family RD08_RS10610 PF02525 Flavodoxin-like fold RD08_RS10620 PF04286 RD08_RS10620 RD08_RS10625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS10625 PF03466 LysR substrate binding domain RD08_RS10630 PF02567 Phenazine biosynthesis-like protein RD08_RS10635 PF07237 Protein of unknown function (DUF1428) RD08_RS10640 PF01965 DJ-1/PfpI family RD08_RS10640 PF12833 Helix-turn-helix domain RD08_RS10645 PF11450 RD08_RS10645 RD08_RS10650 PF03625 Domain of unknown function DUF302 RD08_RS10655 PF12697 Alpha/beta hydrolase family RD08_RS10660 PF12840 Helix-turn-helix domain RD08_RS10665 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RD08_RS10670 PF00916 RD08_RS10670 RD08_RS10670 PF01740 STAS domain RD08_RS10675 PF00392 Bacterial regulatory proteins, gntR family RD08_RS10675 PF07729 FCD domain RD08_RS10685 PF02535 RD08_RS10685 RD08_RS10695 PF00005 ABC transporter RD08_RS10695 PF00664 ABC transporter transmembrane region RD08_RS10700 PF00665 Integrase core domain RD08_RS10700 PF13011 RD08_RS10700 RD08_RS10705 PF00583 Acetyltransferase (GNAT) family RD08_RS10710 PF00665 Integrase core domain RD08_RS10710 PF13011 RD08_RS10710 RD08_RS10715 PF04828 Glutathione-dependent formaldehyde-activating enzyme RD08_RS10720 PF07690 Major Facilitator Superfamily RD08_RS10725 PF06983 3-demethylubiquinone-9 3-methyltransferase RD08_RS10730 PF02190 ATP-dependent protease La (LON) domain RD08_RS10740 PF06719 RD08_RS10740 RD08_RS10740 PF12833 Helix-turn-helix domain RD08_RS10745 PF02625 XdhC and CoxI family RD08_RS10745 PF13478 XdhC Rossmann domain RD08_RS10750 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD08_RS10755 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS10755 PF01799 [2Fe-2S] binding domain RD08_RS10760 PF11720 Peptidase inhibitor I78 family RD08_RS10765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS10765 PF03466 LysR substrate binding domain RD08_RS10770 PF01243 Pyridoxamine 5'-phosphate oxidase RD08_RS10785 PF01548 RD08_RS10785 RD08_RS10785 PF02371 RD08_RS10785 RD08_RS10790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS10790 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS10800 PF00665 Integrase core domain RD08_RS10800 PF13011 RD08_RS10800 RD08_RS10805 PF00665 Integrase core domain RD08_RS10805 PF13011 RD08_RS10805 RD08_RS10815 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS10820 PF01522 Polysaccharide deacetylase RD08_RS10825 PF00561 alpha/beta hydrolase fold RD08_RS10830 PF01425 Amidase RD08_RS10835 PF01425 Amidase RD08_RS10840 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS10850 PF07171 MlrC C-terminus RD08_RS10850 PF07364 Protein of unknown function (DUF1485) RD08_RS10855 PF03372 Endonuclease/Exonuclease/phosphatase family RD08_RS10865 PF05940 RD08_RS10865 RD08_RS10870 PF01152 Bacterial-like globin RD08_RS10875 PF10262 Rdx family RD08_RS10880 PF00665 Integrase core domain RD08_RS10880 PF13011 RD08_RS10880 RD08_RS10885 PF00665 Integrase core domain RD08_RS10885 PF13011 RD08_RS10885 RD08_RS10890 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS10895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS10895 PF03466 LysR substrate binding domain RD08_RS10900 PF12228 RD08_RS10900 RD08_RS10905 PF01796 RD08_RS10905 RD08_RS10905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD08_RS10910 PF00108 Thiolase, N-terminal domain RD08_RS10910 PF02803 Thiolase, C-terminal domain RD08_RS10915 PF00501 AMP-binding enzyme RD08_RS10915 PF14535 AMP-binding enzyme C-terminal domain RD08_RS10920 PF07859 alpha/beta hydrolase fold RD08_RS10925 PF02515 CoA-transferase family III RD08_RS10930 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS10935 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS10940 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS10945 PF00866 Ring hydroxylating beta subunit RD08_RS10950 PF00355 Rieske [2Fe-2S] domain RD08_RS10950 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD08_RS10955 PF13458 Periplasmic binding protein RD08_RS10960 PF02653 RD08_RS10960 RD08_RS10965 PF02653 RD08_RS10965 RD08_RS10970 PF00665 Integrase core domain RD08_RS10970 PF13011 RD08_RS10970 RD08_RS10980 PF00463 Isocitrate lyase family RD08_RS10985 PF14489 QueF-like protein RD08_RS10985 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RD08_RS10995 PF07690 Major Facilitator Superfamily RD08_RS11000 PF01066 CDP-alcohol phosphatidyltransferase RD08_RS11005 PF01541 GIY-YIG catalytic domain RD08_RS11005 PF02151 UvrB/uvrC motif RD08_RS11005 PF08459 UvrC Helix-hairpin-helix N-terminal RD08_RS11005 PF14520 Helix-hairpin-helix domain RD08_RS11010 PF00933 Glycosyl hydrolase family 3 N terminal domain RD08_RS11015 PF01648 4'-phosphopantetheinyl transferase superfamily RD08_RS11020 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RD08_RS11025 PF02321 Outer membrane efflux protein RD08_RS11030 PF00873 AcrB/AcrD/AcrF family RD08_RS11035 PF16576 RD08_RS11035 RD08_RS11040 PF00486 Transcriptional regulatory protein, C terminal RD08_RS11045 PF01734 Patatin-like phospholipase RD08_RS11045 PF12536 RD08_RS11045 RD08_RS11050 PF13590 Domain of unknown function (DUF4136) RD08_RS11055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS11055 PF03459 TOBE domain RD08_RS11060 PF00005 ABC transporter RD08_RS11070 PF04392 ABC transporter substrate binding protein RD08_RS11075 PF00080 Copper/zinc superoxide dismutase (SODC) RD08_RS11080 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS11090 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS11095 PF05292 Malonyl-CoA decarboxylase (MCD) RD08_RS11100 PF00392 Bacterial regulatory proteins, gntR family RD08_RS11100 PF07729 FCD domain RD08_RS11110 PF00108 Thiolase, N-terminal domain RD08_RS11110 PF02803 Thiolase, C-terminal domain RD08_RS11115 PF01361 Tautomerase enzyme RD08_RS11120 PF00005 ABC transporter RD08_RS11125 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS11130 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RD08_RS11135 PF00665 Integrase core domain RD08_RS11135 PF13011 RD08_RS11135 RD08_RS11140 PF02353 Mycolic acid cyclopropane synthetase RD08_RS11145 PF07690 Major Facilitator Superfamily RD08_RS11150 PF00830 Ribosomal L28 family RD08_RS11155 PF00471 Ribosomal protein L33 RD08_RS11160 PF00916 RD08_RS11160 RD08_RS11160 PF01740 STAS domain RD08_RS11165 PF00665 Integrase core domain RD08_RS11165 PF13011 RD08_RS11165 RD08_RS11170 PF00665 Integrase core domain RD08_RS11170 PF13011 RD08_RS11170 RD08_RS11175 PF00216 Bacterial DNA-binding protein RD08_RS11180 PF01047 MarR family RD08_RS11185 PF07690 Major Facilitator Superfamily RD08_RS11190 PF00133 tRNA synthetases class I (I, L, M and V) RD08_RS11190 PF08264 Anticodon-binding domain of tRNA RD08_RS11190 PF09334 tRNA synthetases class I (M) RD08_RS11190 PF13603 Leucyl-tRNA synthetase, Domain 2 RD08_RS11195 PF04390 Lipopolysaccharide-assembly RD08_RS11205 PF00171 Aldehyde dehydrogenase family RD08_RS11215 PF01425 Amidase RD08_RS11220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD08_RS11220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD08_RS11225 PF14542 GCN5-related N-acetyl-transferase RD08_RS11265 PF00665 Integrase core domain RD08_RS11265 PF13011 RD08_RS11265 RD08_RS11270 PF10150 Ribonuclease E/G family RD08_RS11275 PF00800 Prephenate dehydratase RD08_RS11280 PF00440 Bacterial regulatory proteins, tetR family RD08_RS11285 PF07690 Major Facilitator Superfamily RD08_RS11290 PF00005 ABC transporter RD08_RS11290 PF00664 ABC transporter transmembrane region RD08_RS11295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD08_RS11300 PF02698 DUF218 domain RD08_RS11305 PF03692 RD08_RS11305 RD08_RS11310 PF13439 Glycosyltransferase Family 4 RD08_RS11310 PF13692 Glycosyl transferases group 1 RD08_RS11315 PF01522 Polysaccharide deacetylase RD08_RS11320 PF00884 Sulfatase RD08_RS11325 PF00534 Glycosyl transferases group 1 RD08_RS11325 PF13439 Glycosyltransferase Family 4 RD08_RS11330 PF00535 Glycosyl transferase family 2 RD08_RS11335 PF01522 Polysaccharide deacetylase RD08_RS11340 PF00534 Glycosyl transferases group 1 RD08_RS11340 PF13439 Glycosyltransferase Family 4 RD08_RS11345 PF01336 OB-fold nucleic acid binding domain RD08_RS11345 PF02811 PHP domain RD08_RS11345 PF07733 Bacterial DNA polymerase III alpha subunit RD08_RS11345 PF14579 Helix-hairpin-helix motif RD08_RS11350 PF05118 Aspartyl/Asparaginyl beta-hydroxylase RD08_RS11355 PF00271 Helicase conserved C-terminal domain RD08_RS11355 PF04408 Helicase associated domain (HA2) RD08_RS11355 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RD08_RS11355 PF11898 RD08_RS11355 RD08_RS11360 PF00583 Acetyltransferase (GNAT) family RD08_RS11360 PF00696 Amino acid kinase family RD08_RS11365 PF04362 Bacterial Fe(2+) trafficking RD08_RS11370 PF04185 Phosphoesterase family RD08_RS11370 PF05506 RD08_RS11370 RD08_RS11375 PF01895 PhoU domain RD08_RS11380 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RD08_RS11385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS11385 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS11390 PF02646 RD08_RS11390 RD08_RS11395 PF10707 RD08_RS11395 RD08_RS11400 PF02245 Methylpurine-DNA glycosylase (MPG) RD08_RS11405 PF03960 ArsC family RD08_RS11410 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS11415 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS11420 PF00005 ABC transporter RD08_RS11420 PF08402 TOBE domain RD08_RS11425 PF13416 Bacterial extracellular solute-binding protein RD08_RS11430 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family RD08_RS11435 PF01152 Bacterial-like globin RD08_RS11440 PF02687 RD08_RS11440 RD08_RS11445 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS11450 PF04290 RD08_RS11450 RD08_RS11455 PF06808 RD08_RS11455 RD08_RS11460 PF00665 Integrase core domain RD08_RS11460 PF13011 RD08_RS11460 RD08_RS11475 PF00285 Citrate synthase RD08_RS11480 PF03937 Flavinator of succinate dehydrogenase RD08_RS11485 PF13085 2Fe-2S iron-sulfur cluster binding domain RD08_RS11485 PF13534 4Fe-4S dicluster domain RD08_RS11490 PF00890 FAD binding domain RD08_RS11490 PF02910 Fumarate reductase flavoprotein C-term RD08_RS11495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD08_RS11500 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD08_RS11505 PF00392 Bacterial regulatory proteins, gntR family RD08_RS11505 PF07702 UTRA domain RD08_RS11510 PF00056 lactate/malate dehydrogenase, NAD binding domain RD08_RS11510 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RD08_RS11520 PF00285 Citrate synthase RD08_RS11525 PF00330 Aconitase family (aconitate hydratase) RD08_RS11525 PF00694 Aconitase C-terminal domain RD08_RS11530 PF04303 PrpF protein RD08_RS11535 PF03972 MmgE/PrpD family RD08_RS11540 PF03653 RD08_RS11540 RD08_RS11545 PF01170 Putative RNA methylase family UPF0020 RD08_RS11545 PF02926 THUMP domain RD08_RS11555 PF06271 RD08_RS11555 RD08_RS11560 PF00149 Calcineurin-like phosphoesterase RD08_RS11565 PF00501 AMP-binding enzyme RD08_RS11565 PF13193 AMP-binding enzyme C-terminal domain RD08_RS11570 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS11575 PF01430 Hsp33 protein RD08_RS11585 PF07883 Cupin domain RD08_RS11590 PF02627 Carboxymuconolactone decarboxylase family RD08_RS11595 PF13460 NADH(P)-binding RD08_RS11600 PF00486 Transcriptional regulatory protein, C terminal RD08_RS11605 PF04977 Septum formation initiator RD08_RS11610 PF00113 Enolase, C-terminal TIM barrel domain RD08_RS11610 PF03952 Enolase, N-terminal domain RD08_RS11615 PF07045 Protein of unknown function (DUF1330) RD08_RS11620 PF00793 DAHP synthetase I family RD08_RS11625 PF00117 Glutamine amidotransferase class-I RD08_RS11625 PF06418 CTP synthase N-terminus RD08_RS11630 PF00665 Integrase core domain RD08_RS11630 PF13011 RD08_RS11630 RD08_RS11635 PF00557 Metallopeptidase family M24 RD08_RS11635 PF01321 Creatinase/Prolidase N-terminal domain RD08_RS11635 PF16188 RD08_RS11635 RD08_RS11635 PF16189 RD08_RS11635 RD08_RS11640 PF04951 D-aminopeptidase RD08_RS11645 PF03576 Peptidase family S58 RD08_RS11650 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS11650 PF12911 RD08_RS11650 RD08_RS11655 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS11660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS11665 PF00005 ABC transporter RD08_RS11665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS11670 PF01112 Asparaginase RD08_RS11675 PF01380 SIS domain RD08_RS11675 PF01418 Helix-turn-helix domain, rpiR family RD08_RS11680 PF01144 Coenzyme A transferase RD08_RS11690 PF13279 Thioesterase-like superfamily RD08_RS11695 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase RD08_RS11695 PF13450 NAD(P)-binding Rossmann-like domain RD08_RS11700 PF01370 NAD dependent epimerase/dehydratase family RD08_RS11710 PF03992 Antibiotic biosynthesis monooxygenase RD08_RS11715 PF01212 Beta-eliminating lyase RD08_RS11720 PF00892 EamA-like transporter family RD08_RS11725 PF00501 AMP-binding enzyme RD08_RS11725 PF13193 AMP-binding enzyme C-terminal domain RD08_RS11725 PF16177 RD08_RS11725 RD08_RS11730 PF11700 RD08_RS11730 RD08_RS11735 PF03928 Domain of unknown function (DUF336) RD08_RS11740 PF00501 AMP-binding enzyme RD08_RS11740 PF13193 AMP-binding enzyme C-terminal domain RD08_RS11745 PF00877 NlpC/P60 family RD08_RS11750 PF10087 RD08_RS11750 RD08_RS11755 PF00665 Integrase core domain RD08_RS11755 PF13011 RD08_RS11755 RD08_RS11760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS11760 PF03466 LysR substrate binding domain RD08_RS11765 PF00171 Aldehyde dehydrogenase family RD08_RS11770 PF13458 Periplasmic binding protein RD08_RS11775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS11775 PF03466 LysR substrate binding domain RD08_RS11780 PF03739 RD08_RS11780 RD08_RS11785 PF00883 Cytosol aminopeptidase family, catalytic domain RD08_RS11785 PF02789 Cytosol aminopeptidase family, N-terminal domain RD08_RS11790 PF04364 DNA polymerase III chi subunit, HolC RD08_RS11800 PF01027 Inhibitor of apoptosis-promoting Bax1 RD08_RS11805 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS11810 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD08_RS11815 PF00665 Integrase core domain RD08_RS11815 PF13011 RD08_RS11815 RD08_RS11820 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS11825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS11825 PF03466 LysR substrate binding domain RD08_RS11830 PF02565 Recombination protein O C terminal RD08_RS11830 PF11967 Recombination protein O N terminal RD08_RS11835 PF01926 50S ribosome-binding GTPase RD08_RS11835 PF07650 KH domain RD08_RS11840 PF00035 Double-stranded RNA binding motif RD08_RS11840 PF14622 Ribonuclease-III-like RD08_RS11845 PF00717 Peptidase S24-like RD08_RS11845 PF10502 Signal peptidase, peptidase S26 RD08_RS11850 PF00009 Elongation factor Tu GTP binding domain RD08_RS11850 PF00679 Elongation factor G C-terminus RD08_RS11850 PF03144 Elongation factor Tu domain 2 RD08_RS11850 PF06421 GTP-binding protein LepA C-terminus RD08_RS11855 PF13180 PDZ domain RD08_RS11855 PF13365 Trypsin-like peptidase domain RD08_RS11860 PF03888 MucB/RseB family RD08_RS11860 PF17188 RD08_RS11860 RD08_RS11865 PF03872 Anti sigma-E protein RseA, N-terminal domain RD08_RS11870 PF04542 Sigma-70 region 2 RD08_RS11870 PF08281 Sigma-70, region 4 RD08_RS11880 PF00109 Beta-ketoacyl synthase, N-terminal domain RD08_RS11880 PF02801 Beta-ketoacyl synthase, C-terminal domain RD08_RS11885 PF00550 Phosphopantetheine attachment site RD08_RS11890 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS11895 PF00698 Acyl transferase domain RD08_RS11900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD08_RS11900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD08_RS11905 PF02504 Fatty acid synthesis protein RD08_RS11910 PF01783 Ribosomal L32p protein family RD08_RS11915 PF02620 RD08_RS11915 RD08_RS11920 PF02545 Maf-like protein RD08_RS11925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD08_RS11930 PF01471 Putative peptidoglycan binding domain RD08_RS11930 PF01510 N-acetylmuramoyl-L-alanine amidase RD08_RS11935 PF12805 RD08_RS11935 RD08_RS11935 PF13515 RD08_RS11935 RD08_RS11940 PF07690 Major Facilitator Superfamily RD08_RS11945 PF03883 RD08_RS11945 RD08_RS11950 PF00665 Integrase core domain RD08_RS11950 PF13011 RD08_RS11950 RD08_RS11960 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RD08_RS11965 PF06808 RD08_RS11965 RD08_RS11970 PF04290 RD08_RS11970 RD08_RS11975 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS11980 PF01416 tRNA pseudouridine synthase RD08_RS11990 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD08_RS11990 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD08_RS11995 PF00180 Isocitrate/isopropylmalate dehydrogenase RD08_RS12000 PF00694 Aconitase C-terminal domain RD08_RS12005 PF00330 Aconitase family (aconitate hydratase) RD08_RS12010 PF12849 PBP superfamily domain RD08_RS12015 PF00005 ABC transporter RD08_RS12020 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS12025 PF12727 PBP superfamily domain RD08_RS12035 PF01292 Prokaryotic cytochrome b561 RD08_RS12050 PF00384 Molybdopterin oxidoreductase RD08_RS12050 PF01568 Molydopterin dinucleotide binding domain RD08_RS12050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RD08_RS12060 PF02613 Nitrate reductase delta subunit RD08_RS12065 PF00037 4Fe-4S binding domain RD08_RS12065 PF13187 4Fe-4S dicluster domain RD08_RS12070 PF11748 RD08_RS12070 RD08_RS12075 PF11749 RD08_RS12075 RD08_RS12080 PF01883 Domain of unknown function DUF59 RD08_RS12080 PF10609 ParA/MinD ATPase like RD08_RS12085 PF12804 MobA-like NTP transferase domain RD08_RS12090 PF00994 Probable molybdopterin binding domain RD08_RS12090 PF03453 MoeA N-terminal region (domain I and II) RD08_RS12090 PF03454 MoeA C-terminal region (domain IV) RD08_RS12095 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RD08_RS12100 PF01435 Peptidase family M48 RD08_RS12105 PF01264 Chorismate synthase RD08_RS12110 PF00563 EAL domain RD08_RS12120 PF00665 Integrase core domain RD08_RS12120 PF13011 RD08_RS12120 RD08_RS12125 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS12130 PF00005 ABC transporter RD08_RS12130 PF08402 TOBE domain RD08_RS12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS12135 PF03466 LysR substrate binding domain RD08_RS12140 PF00300 Histidine phosphatase superfamily (branch 1) RD08_RS12150 PF02142 MGS-like domain RD08_RS12150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS12150 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RD08_RS12155 PF00117 Glutamine amidotransferase class-I RD08_RS12155 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RD08_RS12160 PF00923 Transaldolase RD08_RS12165 PF00665 Integrase core domain RD08_RS12165 PF13011 RD08_RS12165 RD08_RS12170 PF00665 Integrase core domain RD08_RS12170 PF13011 RD08_RS12170 RD08_RS12175 PF01988 RD08_RS12175 RD08_RS12180 PF03061 Thioesterase superfamily RD08_RS12185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD08_RS12185 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD08_RS12190 PF16113 RD08_RS12190 RD08_RS12195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS12195 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS12195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS12200 PF03658 RnfH family Ubiquitin RD08_RS12205 PF03364 Polyketide cyclase / dehydrase and lipid transport RD08_RS12210 PF00665 Integrase core domain RD08_RS12210 PF13011 RD08_RS12210 RD08_RS12215 PF01668 SmpB protein RD08_RS12220 PF00990 GGDEF domain RD08_RS12225 PF01145 SPFH domain / Band 7 family RD08_RS12225 PF16200 RD08_RS12225 RD08_RS12230 PF00665 Integrase core domain RD08_RS12230 PF13011 RD08_RS12230 RD08_RS12240 PF00117 Glutamine amidotransferase class-I RD08_RS12245 PF00391 PEP-utilising enzyme, mobile domain RD08_RS12245 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RD08_RS12245 PF02896 PEP-utilising enzyme, TIM barrel domain RD08_RS12250 PF03618 RD08_RS12250 RD08_RS12255 PF00588 SpoU rRNA Methylase family RD08_RS12260 PF01351 Ribonuclease HII RD08_RS12265 PF02684 RD08_RS12265 RD08_RS12270 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS12270 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RD08_RS12275 PF07977 FabA-like domain RD08_RS12280 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS12280 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RD08_RS12280 PF14602 Hexapeptide repeat of succinyl-transferase RD08_RS12285 PF03938 Outer membrane protein (OmpH-like) RD08_RS12290 PF01103 Surface antigen RD08_RS12290 PF07244 Surface antigen variable number repeat RD08_RS12295 PF02163 Peptidase family M50 RD08_RS12300 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RD08_RS12300 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal RD08_RS12300 PF13288 DXP reductoisomerase C-terminal domain RD08_RS12305 PF01148 Cytidylyltransferase family RD08_RS12310 PF01255 Putative undecaprenyl diphosphate synthase RD08_RS12315 PF01765 Ribosome recycling factor RD08_RS12320 PF00696 Amino acid kinase family RD08_RS12325 PF00889 Elongation factor TS RD08_RS12330 PF00318 Ribosomal protein S2 RD08_RS12335 PF00557 Metallopeptidase family M24 RD08_RS12340 PF01909 Nucleotidyltransferase domain RD08_RS12340 PF01966 HD domain RD08_RS12340 PF08335 GlnD PII-uridylyltransferase RD08_RS12345 PF01914 RD08_RS12345 RD08_RS12350 PF02600 Disulfide bond formation protein DsbB RD08_RS12355 PF00156 Phosphoribosyl transferase domain RD08_RS12355 PF13522 Glutamine amidotransferase domain RD08_RS12360 PF02674 RD08_RS12360 RD08_RS12365 PF05036 Sporulation related domain RD08_RS12370 PF08245 Mur ligase middle domain RD08_RS12375 PF03646 FlaG protein RD08_RS12380 PF02465 RD08_RS12380 RD08_RS12380 PF07195 RD08_RS12380 RD08_RS12380 PF07196 Flagellin hook IN motif RD08_RS12385 PF02561 Flagellar protein FliS RD08_RS12390 PF05400 Flagellar protein FliT RD08_RS12400 PF02120 Flagellar hook-length control protein FliK RD08_RS12405 PF01312 FlhB HrpN YscU SpaS Family RD08_RS12415 PF02049 RD08_RS12415 RD08_RS12420 PF01514 Secretory protein of YscJ/FliF family RD08_RS12420 PF08345 RD08_RS12420 RD08_RS12425 PF01706 FliG C-terminal domain RD08_RS12425 PF14841 FliG middle domain RD08_RS12425 PF14842 FliG N-terminal domain RD08_RS12430 PF02108 RD08_RS12430 RD08_RS12435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD08_RS12440 PF02050 Flagellar FliJ protein RD08_RS12445 PF02120 Flagellar hook-length control protein FliK RD08_RS12450 PF00665 Integrase core domain RD08_RS12450 PF13011 RD08_RS12450 RD08_RS12460 PF03748 RD08_RS12460 RD08_RS12465 PF01052 Surface presentation of antigens (SPOA) RD08_RS12465 PF02154 Flagellar motor switch protein FliM RD08_RS12470 PF01052 Surface presentation of antigens (SPOA) RD08_RS12475 PF04347 RD08_RS12475 RD08_RS12480 PF00813 RD08_RS12480 RD08_RS12485 PF01313 RD08_RS12485 RD08_RS12490 PF01311 RD08_RS12490 RD08_RS12495 PF01548 RD08_RS12495 RD08_RS12495 PF02371 RD08_RS12495 RD08_RS12500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD08_RS12500 PF00672 HAMP domain RD08_RS12500 PF08447 PAS fold RD08_RS12505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD08_RS12505 PF00672 HAMP domain RD08_RS12505 PF02203 Tar ligand binding domain homologue RD08_RS12510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD08_RS12510 PF00672 HAMP domain RD08_RS12510 PF02203 Tar ligand binding domain homologue RD08_RS12515 PF00669 Bacterial flagellin N-terminal helical region RD08_RS12520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD08_RS12525 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RD08_RS12525 PF10135 RD08_RS12525 RD08_RS12530 PF02119 RD08_RS12530 RD08_RS12535 PF02107 RD08_RS12535 RD08_RS12540 PF00460 Flagella basal body rod protein RD08_RS12540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD08_RS12545 PF00460 Flagella basal body rod protein RD08_RS12545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD08_RS12550 PF00460 Flagella basal body rod protein RD08_RS12550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD08_RS12550 PF07559 Flagellar basal body protein FlaE RD08_RS12555 PF03963 RD08_RS12555 RD08_RS12555 PF13860 FlgD Ig-like domain RD08_RS12555 PF13861 FlgD Tudor-like domain RD08_RS12560 PF00460 Flagella basal body rod protein RD08_RS12560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD08_RS12565 PF00460 Flagella basal body rod protein RD08_RS12570 PF13144 SAF-like RD08_RS12575 PF04316 Anti-sigma-28 factor, FlgM RD08_RS12580 PF05130 FlgN protein RD08_RS12585 PF00448 SRP54-type protein, GTPase domain RD08_RS12595 PF01312 FlhB HrpN YscU SpaS Family RD08_RS12600 PF01548 RD08_RS12600 RD08_RS12600 PF02371 RD08_RS12600 RD08_RS12605 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS12610 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS12615 PF00005 ABC transporter RD08_RS12620 PF00665 Integrase core domain RD08_RS12620 PF13011 RD08_RS12620 RD08_RS12625 PF02558 Ketopantoate reductase PanE/ApbA RD08_RS12625 PF08546 Ketopantoate reductase PanE/ApbA C terminal RD08_RS12630 PF13378 Enolase C-terminal domain-like RD08_RS12635 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS12645 PF00694 Aconitase C-terminal domain RD08_RS12650 PF00356 Bacterial regulatory proteins, lacI family RD08_RS12650 PF13377 Periplasmic binding protein-like domain RD08_RS12655 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS12660 PF02515 CoA-transferase family III RD08_RS12665 PF00285 Citrate synthase RD08_RS12670 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS12675 PF13380 CoA binding domain RD08_RS12675 PF13549 ATP-grasp domain RD08_RS12675 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS12680 PF00392 Bacterial regulatory proteins, gntR family RD08_RS12680 PF07729 FCD domain RD08_RS12685 PF03328 HpcH/HpaI aldolase/citrate lyase family RD08_RS12690 PF03358 NADPH-dependent FMN reductase RD08_RS12695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS12695 PF03466 LysR substrate binding domain RD08_RS12700 PF13087 AAA domain RD08_RS12700 PF13482 RNase_H superfamily RD08_RS12700 PF13604 AAA domain RD08_RS12705 PF03797 Autotransporter beta-domain RD08_RS12715 PF03551 Transcriptional regulator PadR-like family RD08_RS12720 PF03372 Endonuclease/Exonuclease/phosphatase family RD08_RS12725 PF13091 PLD-like domain RD08_RS12735 PF00665 Integrase core domain RD08_RS12735 PF13011 RD08_RS12735 RD08_RS12740 PF03706 RD08_RS12740 RD08_RS12745 PF11379 RD08_RS12745 RD08_RS12750 PF00326 Prolyl oligopeptidase family RD08_RS12760 PF00665 Integrase core domain RD08_RS12760 PF13011 RD08_RS12760 RD08_RS12765 PF11896 Domain of unknown function (DUF3416) RD08_RS12770 PF00128 Alpha amylase, catalytic domain RD08_RS12775 PF00128 Alpha amylase, catalytic domain RD08_RS12775 PF16657 RD08_RS12775 RD08_RS12780 PF00128 Alpha amylase, catalytic domain RD08_RS12780 PF02806 Alpha amylase, C-terminal all-beta domain RD08_RS12780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD08_RS12785 PF00128 Alpha amylase, catalytic domain RD08_RS12785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD08_RS12790 PF00128 Alpha amylase, catalytic domain RD08_RS12790 PF11941 Domain of unknown function (DUF3459) RD08_RS12800 PF02446 4-alpha-glucanotransferase RD08_RS12805 PF00128 Alpha amylase, catalytic domain RD08_RS12815 PF08543 Phosphomethylpyrimidine kinase RD08_RS12820 PF01168 Alanine racemase, N-terminal domain RD08_RS12825 PF00155 Aminotransferase class I and II RD08_RS12825 PF00392 Bacterial regulatory proteins, gntR family RD08_RS12840 PF00582 Universal stress protein family RD08_RS12845 PF00248 Aldo/keto reductase family RD08_RS12855 PF01447 Thermolysin metallopeptidase, catalytic domain RD08_RS12855 PF02868 Thermolysin metallopeptidase, alpha-helical domain RD08_RS12860 PF07681 RD08_RS12860 RD08_RS12865 PF12779 RD08_RS12865 RD08_RS12875 PF00665 Integrase core domain RD08_RS12875 PF13011 RD08_RS12875 RD08_RS12880 PF00578 AhpC/TSA family RD08_RS12885 PF03960 ArsC family RD08_RS12890 PF02515 CoA-transferase family III RD08_RS12895 PF13428 Tetratricopeptide repeat RD08_RS12900 PF08811 RD08_RS12900 RD08_RS12905 PF07394 RD08_RS12905 RD08_RS12910 PF00255 Glutathione peroxidase RD08_RS12915 PF00043 Glutathione S-transferase, C-terminal domain RD08_RS12915 PF02798 Glutathione S-transferase, N-terminal domain RD08_RS12920 PF00583 Acetyltransferase (GNAT) family RD08_RS12930 PF03099 Biotin/lipoate A/B protein ligase family RD08_RS12935 PF11738 Protein of unknown function (DUF3298) RD08_RS12945 PF02666 RD08_RS12945 RD08_RS12950 PF01070 FMN-dependent dehydrogenase RD08_RS12955 PF03180 NLPA lipoprotein RD08_RS12960 PF08808 RD08_RS12960 RD08_RS12965 PF09722 RD08_RS12965 RD08_RS12970 PF04241 RD08_RS12970 RD08_RS12980 PF00665 Integrase core domain RD08_RS12980 PF13011 RD08_RS12980 RD08_RS12985 PF06821 Serine hydrolase RD08_RS12990 PF13458 Periplasmic binding protein RD08_RS12995 PF00005 ABC transporter RD08_RS12995 PF08402 TOBE domain RD08_RS13000 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS13005 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS13010 PF13416 Bacterial extracellular solute-binding protein RD08_RS13015 PF03807 NADP oxidoreductase coenzyme F420-dependent RD08_RS13015 PF14748 Pyrroline-5-carboxylate reductase dimerisation RD08_RS13020 PF02592 RD08_RS13020 RD08_RS13025 PF00665 Integrase core domain RD08_RS13025 PF13011 RD08_RS13025 RD08_RS13030 PF13458 Periplasmic binding protein RD08_RS13035 PF02653 RD08_RS13035 RD08_RS13040 PF02653 RD08_RS13040 RD08_RS13040 PF11862 RD08_RS13040 RD08_RS13045 PF00005 ABC transporter RD08_RS13045 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS13050 PF00005 ABC transporter RD08_RS13055 PF01177 Asp/Glu/Hydantoin racemase RD08_RS13065 PF13417 Glutathione S-transferase, N-terminal domain RD08_RS13070 PF00892 EamA-like transporter family RD08_RS13075 PF00665 Integrase core domain RD08_RS13075 PF13011 RD08_RS13075 RD08_RS13080 PF04235 RD08_RS13080 RD08_RS13085 PF00521 DNA gyrase/topoisomerase IV, subunit A RD08_RS13085 PF03989 DNA gyrase C-terminal domain, beta-propeller RD08_RS13090 PF14317 RD08_RS13090 RD08_RS13095 PF00204 DNA gyrase B RD08_RS13095 PF00986 DNA gyrase B subunit, carboxyl terminus RD08_RS13095 PF01751 Toprim domain RD08_RS13095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS13100 PF00085 Thioredoxin RD08_RS13105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD08_RS13105 PF07497 Rho termination factor, RNA-binding domain RD08_RS13105 PF07498 Rho termination factor, N-terminal domain RD08_RS13115 PF03710 Glutamate-ammonia ligase adenylyltransferase RD08_RS13115 PF08335 GlnD PII-uridylyltransferase RD08_RS13120 PF02677 RD08_RS13120 RD08_RS13125 PF03313 RD08_RS13125 RD08_RS13125 PF03315 Serine dehydratase beta chain RD08_RS13130 PF02690 RD08_RS13130 RD08_RS13135 PF01738 Dienelactone hydrolase family RD08_RS13140 PF02535 RD08_RS13140 RD08_RS13145 PF00476 DNA polymerase family A RD08_RS13145 PF01367 5'-3' exonuclease, C-terminal SAM fold RD08_RS13145 PF01612 3'-5' exonuclease RD08_RS13145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RD08_RS13150 PF03641 Possible lysine decarboxylase RD08_RS13160 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD08_RS13160 PF03440 Aerolysin/Pertussis toxin (APT) domain RD08_RS13165 PF00009 Elongation factor Tu GTP binding domain RD08_RS13165 PF00679 Elongation factor G C-terminus RD08_RS13165 PF03144 Elongation factor Tu domain 2 RD08_RS13170 PF01509 TruB family pseudouridylate synthase (N terminal domain) RD08_RS13170 PF16198 RD08_RS13170 RD08_RS13175 PF02033 Ribosome-binding factor A RD08_RS13180 PF00009 Elongation factor Tu GTP binding domain RD08_RS13180 PF04760 Translation initiation factor IF-2, N-terminal region RD08_RS13180 PF08364 RD08_RS13180 RD08_RS13180 PF11987 Translation-initiation factor 2 RD08_RS13185 PF00575 S1 RNA binding domain RD08_RS13185 PF08529 NusA N-terminal domain RD08_RS13185 PF13184 NusA-like KH domain RD08_RS13185 PF14520 Helix-hairpin-helix domain RD08_RS13190 PF02576 Uncharacterised BCR, YhbC family COG0779 RD08_RS13195 PF00849 RNA pseudouridylate synthase RD08_RS13195 PF01479 S4 domain RD08_RS13200 PF04079 Putative transcriptional regulators (Ypuh-like) RD08_RS13210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13210 PF03466 LysR substrate binding domain RD08_RS13215 PF00881 Nitroreductase family RD08_RS13220 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD08_RS13220 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD08_RS13240 PF13417 Glutathione S-transferase, N-terminal domain RD08_RS13240 PF14497 Glutathione S-transferase, C-terminal domain RD08_RS13245 PF02401 LytB protein RD08_RS13250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD08_RS13255 PF04002 RadC-like JAB domain RD08_RS13260 PF04199 Putative cyclase RD08_RS13265 PF03301 Tryptophan 2,3-dioxygenase RD08_RS13270 PF01197 Ribosomal protein L31 RD08_RS13280 PF01554 MatE RD08_RS13290 PF01925 RD08_RS13290 RD08_RS13295 PF13481 AAA domain RD08_RS13300 PF00092 von Willebrand factor type A domain RD08_RS13300 PF12034 RD08_RS13300 RD08_RS13300 PF12450 RD08_RS13300 RD08_RS13305 PF04542 Sigma-70 region 2 RD08_RS13305 PF08281 Sigma-70, region 4 RD08_RS13310 PF00665 Integrase core domain RD08_RS13310 PF13011 RD08_RS13310 RD08_RS13320 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS13325 PF00842 Alanine racemase, C-terminal domain RD08_RS13325 PF01168 Alanine racemase, N-terminal domain RD08_RS13330 PF00494 Squalene/phytoene synthase RD08_RS13335 PF00494 Squalene/phytoene synthase RD08_RS13340 PF01593 Flavin containing amine oxidoreductase RD08_RS13345 PF02537 RD08_RS13345 RD08_RS13350 PF03729 RD08_RS13350 RD08_RS13355 PF01061 RD08_RS13355 RD08_RS13360 PF00005 ABC transporter RD08_RS13365 PF16357 RD08_RS13365 RD08_RS13370 PF10029 RD08_RS13370 RD08_RS13375 PF10670 RD08_RS13375 RD08_RS13380 PF02424 ApbE family RD08_RS13385 PF00175 Oxidoreductase NAD-binding domain RD08_RS13385 PF00258 Flavodoxin RD08_RS13390 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS13395 PF07969 Amidohydrolase family RD08_RS13400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13400 PF03466 LysR substrate binding domain RD08_RS13405 PF10604 Polyketide cyclase / dehydrase and lipid transport RD08_RS13410 PF09370 TIM-barrel signal transduction protein RD08_RS13415 PF06792 Uncharacterised protein family (UPF0261) RD08_RS13420 PF00440 Bacterial regulatory proteins, tetR family RD08_RS13425 PF03797 Autotransporter beta-domain RD08_RS13430 PF03797 Autotransporter beta-domain RD08_RS13435 PF00665 Integrase core domain RD08_RS13435 PF13011 RD08_RS13435 RD08_RS13440 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS13440 PF02861 Clp amino terminal domain RD08_RS13440 PF07724 AAA domain (Cdc48 subfamily) RD08_RS13440 PF10431 C-terminal, D2-small domain, of ClpB protein RD08_RS13445 PF00027 Cyclic nucleotide-binding domain RD08_RS13445 PF13545 Crp-like helix-turn-helix domain RD08_RS13455 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS13460 PF00293 NUDIX domain RD08_RS13465 PF12843 RD08_RS13465 RD08_RS13475 PF04542 Sigma-70 region 2 RD08_RS13475 PF08281 Sigma-70, region 4 RD08_RS13475 PF12680 SnoaL-like domain RD08_RS13480 PF02627 Carboxymuconolactone decarboxylase family RD08_RS13485 PF04170 NlpE N-terminal domain RD08_RS13490 PF09791 RD08_RS13490 RD08_RS13505 PF03737 Demethylmenaquinone methyltransferase RD08_RS13510 PF00155 Aminotransferase class I and II RD08_RS13515 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS13520 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS13525 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS13530 PF00005 ABC transporter RD08_RS13535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13535 PF03466 LysR substrate binding domain RD08_RS13540 PF00892 EamA-like transporter family RD08_RS13545 PF00665 Integrase core domain RD08_RS13545 PF13011 RD08_RS13545 RD08_RS13550 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD08_RS13555 PF04076 Bacterial OB fold (BOF) protein RD08_RS13570 PF06684 Amino acid synthesis RD08_RS13575 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS13580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD08_RS13580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD08_RS13585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13585 PF03466 LysR substrate binding domain RD08_RS13590 PF00596 Class II Aldolase and Adducin N-terminal domain RD08_RS13595 PF02016 LD-carboxypeptidase RD08_RS13605 PF00474 Sodium:solute symporter family RD08_RS13610 PF07690 Major Facilitator Superfamily RD08_RS13615 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS13620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13620 PF03466 LysR substrate binding domain RD08_RS13625 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RD08_RS13625 PF13378 Enolase C-terminal domain-like RD08_RS13630 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS13635 PF04909 Amidohydrolase RD08_RS13640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD08_RS13645 PF00665 Integrase core domain RD08_RS13645 PF13011 RD08_RS13645 RD08_RS13650 PF02567 Phenazine biosynthesis-like protein RD08_RS13655 PF12801 RD08_RS13655 RD08_RS13660 PF03239 RD08_RS13660 RD08_RS13665 PF13473 Cupredoxin-like domain RD08_RS13670 PF10634 Fe2+ transport protein RD08_RS13675 PF05233 RD08_RS13675 RD08_RS13675 PF07879 RD08_RS13675 RD08_RS13680 PF00106 short chain dehydrogenase RD08_RS13685 PF07167 RD08_RS13685 RD08_RS13690 PF02578 Multi-copper polyphenol oxidoreductase laccase RD08_RS13695 PF00849 RNA pseudouridylate synthase RD08_RS13695 PF01479 S4 domain RD08_RS13700 PF13525 Outer membrane lipoprotein RD08_RS13705 PF06733 DEAD_2 RD08_RS13705 PF13307 Helicase C-terminal domain RD08_RS13710 PF00575 S1 RNA binding domain RD08_RS13710 PF09371 Tex-like protein N-terminal domain RD08_RS13710 PF12836 Helix-hairpin-helix motif RD08_RS13710 PF16921 RD08_RS13710 RD08_RS13715 PF00579 tRNA synthetases class I (W and Y) RD08_RS13720 PF13011 RD08_RS13720 RD08_RS13725 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD08_RS13730 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS13735 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS13740 PF00665 Integrase core domain RD08_RS13740 PF13011 RD08_RS13740 RD08_RS13745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS13745 PF03466 LysR substrate binding domain RD08_RS13750 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS13755 PF03969 AFG1-like ATPase RD08_RS13760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS13760 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS13765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD08_RS13765 PF00364 Biotin-requiring enzyme RD08_RS13765 PF02817 e3 binding domain RD08_RS13770 PF00676 Dehydrogenase E1 component RD08_RS13770 PF02779 Transketolase, pyrimidine binding domain RD08_RS13770 PF16078 RD08_RS13770 RD08_RS13770 PF16870 RD08_RS13770 RD08_RS13780 PF03169 RD08_RS13780 RD08_RS13785 PF01037 AsnC family RD08_RS13785 PF13412 Winged helix-turn-helix DNA-binding RD08_RS13790 PF00456 Transketolase, thiamine diphosphate binding domain RD08_RS13795 PF00390 Malic enzyme, N-terminal domain RD08_RS13795 PF01515 Phosphate acetyl/butaryl transferase RD08_RS13795 PF03949 Malic enzyme, NAD binding domain RD08_RS13800 PF16970 RD08_RS13800 RD08_RS13805 PF00665 Integrase core domain RD08_RS13805 PF13011 RD08_RS13805 RD08_RS13810 PF01272 Transcription elongation factor, GreA/GreB, C-term RD08_RS13810 PF03449 Transcription elongation factor, N-terminal RD08_RS13815 PF02811 PHP domain RD08_RS13820 PF12697 Alpha/beta hydrolase family RD08_RS13825 PF00665 Integrase core domain RD08_RS13825 PF13011 RD08_RS13825 RD08_RS13830 PF03772 RD08_RS13830 RD08_RS13830 PF13567 RD08_RS13830 RD08_RS13835 PF11924 Protein of unknown function (DUF3442) RD08_RS13845 PF03797 Autotransporter beta-domain RD08_RS13850 PF01026 TatD related DNase RD08_RS13855 PF00005 ABC transporter RD08_RS13860 PF02687 RD08_RS13860 RD08_RS13860 PF12704 MacB-like periplasmic core domain RD08_RS13870 PF01368 DHH family RD08_RS13870 PF02272 DHHA1 domain RD08_RS13875 PF00472 RF-1 domain RD08_RS13875 PF03462 PCRF domain RD08_RS13880 PF00106 short chain dehydrogenase RD08_RS13885 PF00152 tRNA synthetases class II (D, K and N) RD08_RS13885 PF01336 OB-fold nucleic acid binding domain RD08_RS13895 PF00440 Bacterial regulatory proteins, tetR family RD08_RS13900 PF00501 AMP-binding enzyme RD08_RS13905 PF00005 ABC transporter RD08_RS13910 PF13458 Periplasmic binding protein RD08_RS13920 PF02653 RD08_RS13920 RD08_RS13925 PF00005 ABC transporter RD08_RS13925 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS13930 PF00665 Integrase core domain RD08_RS13930 PF13011 RD08_RS13930 RD08_RS13935 PF00563 EAL domain RD08_RS13935 PF00990 GGDEF domain RD08_RS13935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS13940 PF00072 Response regulator receiver domain RD08_RS13940 PF00486 Transcriptional regulatory protein, C terminal RD08_RS13945 PF02696 RD08_RS13945 RD08_RS13950 PF09842 RD08_RS13950 RD08_RS13955 PF03631 RD08_RS13955 RD08_RS13960 PF00571 CBS domain RD08_RS13965 PF00665 Integrase core domain RD08_RS13965 PF13011 RD08_RS13965 RD08_RS13970 PF01207 Dihydrouridine synthase (Dus) RD08_RS13975 PF01636 Phosphotransferase enzyme family RD08_RS13985 PF00482 Type II secretion system (T2SS), protein F RD08_RS13990 PF00665 Integrase core domain RD08_RS13990 PF13011 RD08_RS13990 RD08_RS13995 PF01985 CRS1 / YhbY (CRM) domain RD08_RS14000 PF01728 FtsJ-like methyltransferase RD08_RS14005 PF00004 ATPase family associated with various cellular activities (AAA) RD08_RS14005 PF01434 Peptidase family M41 RD08_RS14005 PF06480 FtsH Extracellular RD08_RS14010 PF00809 Pterin binding enzyme RD08_RS14015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD08_RS14015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD08_RS14015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD08_RS14015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD08_RS14020 PF13444 Acetyltransferase (GNAT) domain RD08_RS14025 PF02541 Ppx/GppA phosphatase family RD08_RS14030 PF02503 Polyphosphate kinase middle domain RD08_RS14030 PF13089 Polyphosphate kinase N-terminal domain RD08_RS14030 PF13090 Polyphosphate kinase C-terminal domain RD08_RS14035 PF12849 PBP superfamily domain RD08_RS14040 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS14045 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS14050 PF00005 ABC transporter RD08_RS14060 PF00665 Integrase core domain RD08_RS14060 PF13011 RD08_RS14060 RD08_RS14065 PF01337 Barstar (barnase inhibitor) RD08_RS14075 PF00390 Malic enzyme, N-terminal domain RD08_RS14075 PF01515 Phosphate acetyl/butaryl transferase RD08_RS14075 PF03949 Malic enzyme, NAD binding domain RD08_RS14085 PF00155 Aminotransferase class I and II RD08_RS14090 PF01464 Transglycosylase SLT domain RD08_RS14095 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RD08_RS14105 PF07332 RD08_RS14105 RD08_RS14110 PF05957 RD08_RS14110 RD08_RS14120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD08_RS14120 PF10414 Sirohaem synthase dimerisation region RD08_RS14120 PF13241 Putative NAD(P)-binding RD08_RS14120 PF14824 Sirohaem biosynthesis protein central RD08_RS14125 PF03212 Pertactin RD08_RS14125 PF03797 Autotransporter beta-domain RD08_RS14130 PF01548 RD08_RS14130 RD08_RS14130 PF02371 RD08_RS14130 RD08_RS14135 PF14681 Uracil phosphoribosyltransferase RD08_RS14140 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RD08_RS14145 PF02547 Queuosine biosynthesis protein RD08_RS14150 PF01702 Queuine tRNA-ribosyltransferase RD08_RS14155 PF02699 Preprotein translocase subunit RD08_RS14160 PF02355 Protein export membrane protein RD08_RS14160 PF07549 SecD/SecF GG Motif RD08_RS14160 PF13721 SecD export protein N-terminal TM region RD08_RS14165 PF02355 Protein export membrane protein RD08_RS14165 PF07549 SecD/SecF GG Motif RD08_RS14170 PF01548 RD08_RS14170 RD08_RS14170 PF02371 RD08_RS14170 RD08_RS14180 PF00919 Uncharacterized protein family UPF0004 RD08_RS14180 PF01938 TRAM domain RD08_RS14180 PF04055 Radical SAM superfamily RD08_RS14185 PF02562 PhoH-like protein RD08_RS14190 PF02130 Uncharacterized protein family UPF0054 RD08_RS14195 PF00571 CBS domain RD08_RS14195 PF03471 Transporter associated domain RD08_RS14200 PF00795 Carbon-nitrogen hydrolase RD08_RS14205 PF00248 Aldo/keto reductase family RD08_RS14225 PF01548 RD08_RS14225 RD08_RS14225 PF02371 RD08_RS14225 RD08_RS14230 PF04344 Chemotaxis phosphatase, CheZ RD08_RS14235 PF00072 Response regulator receiver domain RD08_RS14240 PF00072 Response regulator receiver domain RD08_RS14240 PF01339 CheB methylesterase RD08_RS14250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD08_RS14250 PF00672 HAMP domain RD08_RS14250 PF02203 Tar ligand binding domain homologue RD08_RS14255 PF01584 CheW-like domain RD08_RS14260 PF01584 CheW-like domain RD08_RS14260 PF01627 Hpt domain RD08_RS14260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS14260 PF02895 Signal transducing histidine kinase, homodimeric domain RD08_RS14260 PF09078 CheY binding RD08_RS14265 PF00072 Response regulator receiver domain RD08_RS14270 PF00691 OmpA family RD08_RS14270 PF13677 RD08_RS14270 RD08_RS14275 PF01618 RD08_RS14275 RD08_RS14280 PF05280 Flagellar transcriptional activator (FlhC) RD08_RS14285 PF05247 Flagellar transcriptional activator (FlhD) RD08_RS14290 PF04539 Sigma-70 region 3 RD08_RS14290 PF04542 Sigma-70 region 2 RD08_RS14290 PF04545 Sigma-70, region 4 RD08_RS14295 PF00665 Integrase core domain RD08_RS14295 PF13011 RD08_RS14295 RD08_RS14300 PF01176 Translation initiation factor 1A / IF-1 RD08_RS14310 PF01551 Peptidase family M23 RD08_RS14320 PF00994 Probable molybdopterin binding domain RD08_RS14330 PF03591 RD08_RS14330 RD08_RS14330 PF05437 RD08_RS14330 RD08_RS14335 PF13591 MerR HTH family regulatory protein RD08_RS14340 PF00226 DnaJ domain RD08_RS14340 PF01556 DnaJ C terminal domain RD08_RS14345 PF00583 Acetyltransferase (GNAT) family RD08_RS14350 PF05163 DinB family RD08_RS14355 PF00665 Integrase core domain RD08_RS14355 PF13011 RD08_RS14355 RD08_RS14360 PF02798 Glutathione S-transferase, N-terminal domain RD08_RS14360 PF14834 Glutathione S-transferase, C-terminal domain RD08_RS14365 PF11339 RD08_RS14365 RD08_RS14370 PF01515 Phosphate acetyl/butaryl transferase RD08_RS14375 PF00871 Acetokinase family RD08_RS14380 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS14385 PF00162 Phosphoglycerate kinase RD08_RS14390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD08_RS14390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RD08_RS14395 PF00456 Transketolase, thiamine diphosphate binding domain RD08_RS14395 PF02779 Transketolase, pyrimidine binding domain RD08_RS14395 PF02780 Transketolase, C-terminal domain RD08_RS14400 PF04452 RNA methyltransferase RD08_RS14405 PF00665 Integrase core domain RD08_RS14405 PF13011 RD08_RS14405 RD08_RS14410 PF00669 Bacterial flagellin N-terminal helical region RD08_RS14410 PF00700 Bacterial flagellin C-terminal helical region RD08_RS14415 PF00364 Biotin-requiring enzyme RD08_RS14415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS14415 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS14420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD08_RS14420 PF00364 Biotin-requiring enzyme RD08_RS14420 PF02817 e3 binding domain RD08_RS14425 PF00456 Transketolase, thiamine diphosphate binding domain RD08_RS14430 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS14430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS14430 PF08448 PAS fold RD08_RS14430 PF13188 PAS domain RD08_RS14435 PF00072 Response regulator receiver domain RD08_RS14435 PF00196 Bacterial regulatory proteins, luxR family RD08_RS14440 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD08_RS14440 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD08_RS14445 PF01432 Peptidase family M3 RD08_RS14450 PF02630 SCO1/SenC RD08_RS14455 PF04226 RD08_RS14455 RD08_RS14460 PF02321 Outer membrane efflux protein RD08_RS14465 PF00873 AcrB/AcrD/AcrF family RD08_RS14470 PF13533 Biotin-lipoyl like RD08_RS14475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS14475 PF03466 LysR substrate binding domain RD08_RS14480 PF00849 RNA pseudouridylate synthase RD08_RS14480 PF01479 S4 domain RD08_RS14485 PF04345 Chorismate lyase RD08_RS14490 PF07690 Major Facilitator Superfamily RD08_RS14495 PF01548 RD08_RS14495 RD08_RS14495 PF02371 RD08_RS14495 RD08_RS14500 PF00248 Aldo/keto reductase family RD08_RS14505 PF00665 Integrase core domain RD08_RS14505 PF13011 RD08_RS14505 RD08_RS14510 PF00293 NUDIX domain RD08_RS14515 PF01245 Ribosomal protein L19 RD08_RS14520 PF00892 EamA-like transporter family RD08_RS14530 PF04055 Radical SAM superfamily RD08_RS14540 PF01507 Phosphoadenosine phosphosulfate reductase family RD08_RS14545 PF01507 Phosphoadenosine phosphosulfate reductase family RD08_RS14550 PF00005 ABC transporter RD08_RS14550 PF12857 RD08_RS14550 RD08_RS14555 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS14560 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS14570 PF13531 Bacterial extracellular solute-binding protein RD08_RS14575 PF00578 AhpC/TSA family RD08_RS14575 PF10417 C-terminal domain of 1-Cys peroxiredoxin RD08_RS14580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS14580 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS14580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS14580 PF12418 RD08_RS14580 RD08_RS14580 PF12806 RD08_RS14580 RD08_RS14585 PF00766 Electron transfer flavoprotein FAD-binding domain RD08_RS14585 PF01012 Electron transfer flavoprotein domain RD08_RS14590 PF01012 Electron transfer flavoprotein domain RD08_RS14595 PF00850 Histone deacetylase domain RD08_RS14600 PF13406 Transglycosylase SLT domain RD08_RS14605 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS14610 PF00665 Integrase core domain RD08_RS14610 PF13011 RD08_RS14610 RD08_RS14615 PF12836 Helix-hairpin-helix motif RD08_RS14620 PF01370 NAD dependent epimerase/dehydratase family RD08_RS14625 PF00294 pfkB family carbohydrate kinase RD08_RS14635 PF06305 RD08_RS14635 RD08_RS14640 PF00216 Bacterial DNA-binding protein RD08_RS14645 PF00575 S1 RNA binding domain RD08_RS14650 PF02224 Cytidylate kinase RD08_RS14655 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD08_RS14660 PF02153 Prephenate dehydrogenase RD08_RS14665 PF00800 Prephenate dehydratase RD08_RS14665 PF01817 Chorismate mutase type II RD08_RS14665 PF01842 ACT domain RD08_RS14670 PF00266 Aminotransferase class-V RD08_RS14675 PF00521 DNA gyrase/topoisomerase IV, subunit A RD08_RS14675 PF03989 DNA gyrase C-terminal domain, beta-propeller RD08_RS14680 PF00691 OmpA family RD08_RS14685 PF13489 Methyltransferase domain RD08_RS14690 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS14695 PF07690 Major Facilitator Superfamily RD08_RS14705 PF07927 YcfA-like protein RD08_RS14710 PF00665 Integrase core domain RD08_RS14710 PF13011 RD08_RS14710 RD08_RS14715 PF15919 RD08_RS14715 RD08_RS14720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS14720 PF03466 LysR substrate binding domain RD08_RS14725 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS14730 PF00665 Integrase core domain RD08_RS14730 PF13011 RD08_RS14730 RD08_RS14735 PF00817 impB/mucB/samB family RD08_RS14735 PF11798 IMS family HHH motif RD08_RS14735 PF11799 impB/mucB/samB family C-terminal domain RD08_RS14740 PF03061 Thioesterase superfamily RD08_RS14745 PF00326 Prolyl oligopeptidase family RD08_RS14750 PF00905 Penicillin binding protein transpeptidase domain RD08_RS14750 PF00912 Transglycosylase RD08_RS14750 PF17092 RD08_RS14750 RD08_RS14755 PF00149 Calcineurin-like phosphoesterase RD08_RS14760 PF03929 RD08_RS14760 RD08_RS14770 PF00248 Aldo/keto reductase family RD08_RS14775 PF00248 Aldo/keto reductase family RD08_RS14780 PF00005 ABC transporter RD08_RS14780 PF00664 ABC transporter transmembrane region RD08_RS14785 PF00355 Rieske [2Fe-2S] domain RD08_RS14790 PF00665 Integrase core domain RD08_RS14790 PF13011 RD08_RS14790 RD08_RS14805 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) RD08_RS14820 PF00665 Integrase core domain RD08_RS14820 PF13011 RD08_RS14820 RD08_RS14825 PF01039 Carboxyl transferase domain RD08_RS14830 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RD08_RS14830 PF02785 Biotin carboxylase C-terminal domain RD08_RS14830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS14835 PF00392 Bacterial regulatory proteins, gntR family RD08_RS14835 PF07702 UTRA domain RD08_RS14840 PF01370 NAD dependent epimerase/dehydratase family RD08_RS14845 PF04909 Amidohydrolase RD08_RS14855 PF00682 HMGL-like RD08_RS14855 PF02436 Conserved carboxylase domain RD08_RS14860 PF00364 Biotin-requiring enzyme RD08_RS14865 PF03972 MmgE/PrpD family RD08_RS14870 PF13487 HD domain RD08_RS14885 PF02253 Phospholipase A1 RD08_RS14890 PF07238 PilZ domain RD08_RS14890 PF07317 Flagellar regulator YcgR RD08_RS14895 PF11769 RD08_RS14895 RD08_RS14905 PF05724 Thiopurine S-methyltransferase (TPMT) RD08_RS14910 PF00005 ABC transporter RD08_RS14910 PF00664 ABC transporter transmembrane region RD08_RS14915 PF00665 Integrase core domain RD08_RS14915 PF13011 RD08_RS14915 RD08_RS14920 PF12805 RD08_RS14920 RD08_RS14925 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS14925 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS14925 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS14930 PF10369 Small subunit of acetolactate synthase RD08_RS14930 PF13710 ACT domain RD08_RS14935 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RD08_RS14935 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain RD08_RS14940 PF01066 CDP-alcohol phosphatidyltransferase RD08_RS14950 PF00312 Ribosomal protein S15 RD08_RS14955 PF00013 KH domain RD08_RS14955 PF00575 S1 RNA binding domain RD08_RS14955 PF01138 3' exoribonuclease family, domain 1 RD08_RS14955 PF03725 3' exoribonuclease family, domain 2 RD08_RS14955 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RD08_RS14965 PF00665 Integrase core domain RD08_RS14965 PF13011 RD08_RS14965 RD08_RS14970 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS14975 PF13470 RD08_RS14975 RD08_RS14985 PF00107 Zinc-binding dehydrogenase RD08_RS14985 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS14990 PF00121 Triosephosphate isomerase RD08_RS14995 PF03840 Preprotein translocase SecG subunit RD08_RS15005 PF02028 BCCT family transporter RD08_RS15010 PF01614 Bacterial transcriptional regulator RD08_RS15010 PF09339 IclR helix-turn-helix domain RD08_RS15015 PF05034 Methylaspartate ammonia-lyase N-terminus RD08_RS15015 PF07476 Methylaspartate ammonia-lyase C-terminus RD08_RS15020 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15025 PF03972 MmgE/PrpD family RD08_RS15035 PF00206 Lyase RD08_RS15035 PF14698 Argininosuccinate lyase C-terminal RD08_RS15040 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15045 PF01548 RD08_RS15045 RD08_RS15045 PF02371 RD08_RS15045 RD08_RS15050 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS15055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS15055 PF03466 LysR substrate binding domain RD08_RS15060 PF01053 Cys/Met metabolism PLP-dependent enzyme RD08_RS15065 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD08_RS15070 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15075 PF00581 Rhodanese-like domain RD08_RS15080 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15085 PF01266 FAD dependent oxidoreductase RD08_RS15090 PF02538 RD08_RS15090 RD08_RS15095 PF01968 Hydantoinase/oxoprolinase RD08_RS15095 PF05378 RD08_RS15095 RD08_RS15100 PF09339 IclR helix-turn-helix domain RD08_RS15105 PF00127 Copper binding proteins, plastocyanin/azurin family RD08_RS15110 PF03551 Transcriptional regulator PadR-like family RD08_RS15115 PF02321 Outer membrane efflux protein RD08_RS15120 PF00873 AcrB/AcrD/AcrF family RD08_RS15125 PF16576 RD08_RS15125 RD08_RS15130 PF01638 HxlR-like helix-turn-helix RD08_RS15130 PF14864 Alkyl sulfatase C-terminal RD08_RS15135 PF00665 Integrase core domain RD08_RS15135 PF13011 RD08_RS15135 RD08_RS15140 PF02028 BCCT family transporter RD08_RS15145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS15145 PF03466 LysR substrate binding domain RD08_RS15150 PF00781 Diacylglycerol kinase catalytic domain RD08_RS15155 PF00149 Calcineurin-like phosphoesterase RD08_RS15160 PF01569 PAP2 superfamily RD08_RS15165 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD08_RS15170 PF03061 Thioesterase superfamily RD08_RS15175 PF00440 Bacterial regulatory proteins, tetR family RD08_RS15180 PF00665 Integrase core domain RD08_RS15180 PF13011 RD08_RS15180 RD08_RS15185 PF13609 Gram-negative porin RD08_RS15190 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RD08_RS15195 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RD08_RS15200 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RD08_RS15205 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RD08_RS15210 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin RD08_RS15215 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RD08_RS15215 PF10531 SLBB domain RD08_RS15215 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RD08_RS15220 PF00384 Molybdopterin oxidoreductase RD08_RS15220 PF01568 Molydopterin dinucleotide binding domain RD08_RS15220 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RD08_RS15220 PF13510 2Fe-2S iron-sulfur cluster binding domain RD08_RS15225 PF00146 NADH dehydrogenase RD08_RS15230 PF12838 4Fe-4S dicluster domain RD08_RS15235 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RD08_RS15240 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD08_RS15245 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RD08_RS15245 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD08_RS15250 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RD08_RS15255 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RD08_RS15260 PF10993 RD08_RS15260 RD08_RS15265 PF00593 TonB dependent receptor RD08_RS15265 PF07715 TonB-dependent Receptor Plug Domain RD08_RS15270 PF00593 TonB dependent receptor RD08_RS15270 PF07715 TonB-dependent Receptor Plug Domain RD08_RS15275 PF13302 Acetyltransferase (GNAT) domain RD08_RS15280 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS15285 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS15285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS15285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS15290 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS15295 PF03466 LysR substrate binding domain RD08_RS15300 PF12710 haloacid dehalogenase-like hydrolase RD08_RS15300 PF13284 RD08_RS15300 RD08_RS15305 PF00270 DEAD/DEAH box helicase RD08_RS15305 PF00271 Helicase conserved C-terminal domain RD08_RS15305 PF02559 CarD-like/TRCF domain RD08_RS15305 PF03461 TRCF domain RD08_RS15310 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RD08_RS15315 PF02542 YgbB family RD08_RS15320 PF00665 Integrase core domain RD08_RS15320 PF13011 RD08_RS15320 RD08_RS15325 PF00316 Fructose-1-6-bisphosphatase RD08_RS15330 PF01433 Peptidase family M1 RD08_RS15330 PF11940 Domain of unknown function (DUF3458) RD08_RS15335 PF13590 Domain of unknown function (DUF4136) RD08_RS15340 PF00665 Integrase core domain RD08_RS15340 PF13011 RD08_RS15340 RD08_RS15345 PF00924 Mechanosensitive ion channel RD08_RS15350 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS15350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS15350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS15355 PF13468 Glyoxalase-like domain RD08_RS15360 PF09084 NMT1/THI5 like RD08_RS15365 PF00005 ABC transporter RD08_RS15370 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS15375 PF10994 Protein of unknown function (DUF2817) RD08_RS15380 PF00501 AMP-binding enzyme RD08_RS15380 PF13193 AMP-binding enzyme C-terminal domain RD08_RS15385 PF00107 Zinc-binding dehydrogenase RD08_RS15385 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS15390 PF00392 Bacterial regulatory proteins, gntR family RD08_RS15390 PF07729 FCD domain RD08_RS15395 PF03797 Autotransporter beta-domain RD08_RS15400 PF00392 Bacterial regulatory proteins, gntR family RD08_RS15400 PF07729 FCD domain RD08_RS15405 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS15405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS15405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS15410 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS15415 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15425 PF01063 Aminotransferase class IV RD08_RS15430 PF00005 ABC transporter RD08_RS15435 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS15445 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS15450 PF03466 LysR substrate binding domain RD08_RS15455 PF02321 Outer membrane efflux protein RD08_RS15460 PF13437 HlyD family secretion protein RD08_RS15460 PF13533 Biotin-lipoyl like RD08_RS15465 PF00005 ABC transporter RD08_RS15465 PF00664 ABC transporter transmembrane region RD08_RS15465 PF03412 Peptidase C39 family RD08_RS15470 PF00353 Hemolysin-type calcium-binding repeat (2 copies) RD08_RS15470 PF02382 RD08_RS15470 RD08_RS15470 PF03497 Anthrax toxin LF subunit RD08_RS15480 PF02794 RD08_RS15480 RD08_RS15485 PF00171 Aldehyde dehydrogenase family RD08_RS15490 PF00665 Integrase core domain RD08_RS15490 PF13011 RD08_RS15490 RD08_RS15495 PF01266 FAD dependent oxidoreductase RD08_RS15500 PF02538 RD08_RS15500 RD08_RS15505 PF01968 Hydantoinase/oxoprolinase RD08_RS15505 PF05378 RD08_RS15505 RD08_RS15510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS15510 PF03466 LysR substrate binding domain RD08_RS15520 PF00348 Polyprenyl synthetase RD08_RS15525 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD08_RS15530 PF00829 Ribosomal prokaryotic L21 protein RD08_RS15535 PF01016 Ribosomal L27 protein RD08_RS15540 PF01018 GTP1/OBG RD08_RS15540 PF01926 50S ribosome-binding GTPase RD08_RS15545 PF00696 Amino acid kinase family RD08_RS15545 PF01472 PUA domain RD08_RS15555 PF01381 Helix-turn-helix RD08_RS15560 PF00665 Integrase core domain RD08_RS15560 PF13011 RD08_RS15560 RD08_RS15570 PF06634 RD08_RS15570 RD08_RS15575 PF00665 Integrase core domain RD08_RS15575 PF13011 RD08_RS15575 RD08_RS15585 PF04773 FecR protein RD08_RS15585 PF16220 RD08_RS15585 RD08_RS15590 PF00593 TonB dependent receptor RD08_RS15590 PF07660 Secretin and TonB N terminus short domain RD08_RS15590 PF07715 TonB-dependent Receptor Plug Domain RD08_RS15595 PF04264 YceI-like domain RD08_RS15605 PF00665 Integrase core domain RD08_RS15605 PF13011 RD08_RS15605 RD08_RS15610 PF03435 Saccharopine dehydrogenase RD08_RS15610 PF16653 RD08_RS15610 RD08_RS15615 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD08_RS15620 PF00665 Integrase core domain RD08_RS15620 PF13011 RD08_RS15620 RD08_RS15630 PF01614 Bacterial transcriptional regulator RD08_RS15630 PF09339 IclR helix-turn-helix domain RD08_RS15635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS15640 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS15645 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS15650 PF00005 ABC transporter RD08_RS15650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS15655 PF01425 Amidase RD08_RS15660 PF00202 Aminotransferase class-III RD08_RS15665 PF06348 RD08_RS15665 RD08_RS15670 PF13714 Phosphoenolpyruvate phosphomutase RD08_RS15675 PF00665 Integrase core domain RD08_RS15675 PF13011 RD08_RS15675 RD08_RS15680 PF00691 OmpA family RD08_RS15685 PF01329 Pterin 4 alpha carbinolamine dehydratase RD08_RS15695 PF00483 Nucleotidyl transferase RD08_RS15700 PF01636 Phosphotransferase enzyme family RD08_RS15705 PF04453 Organic solvent tolerance protein RD08_RS15710 PF00639 PPIC-type PPIASE domain RD08_RS15710 PF09312 SurA N-terminal domain RD08_RS15710 PF13616 PPIC-type PPIASE domain RD08_RS15715 PF00398 Ribosomal RNA adenine dimethylase RD08_RS15720 PF02595 Glycerate kinase family RD08_RS15725 PF00224 Pyruvate kinase, barrel domain RD08_RS15725 PF02887 Pyruvate kinase, alpha/beta domain RD08_RS15730 PF07670 Nucleoside recognition RD08_RS15735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS15735 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS15735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS15735 PF09317 RD08_RS15735 RD08_RS15740 PF00665 Integrase core domain RD08_RS15740 PF13011 RD08_RS15740 RD08_RS15745 PF01019 Gamma-glutamyltranspeptidase RD08_RS15750 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15755 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS15760 PF00005 ABC transporter RD08_RS15765 PF01032 FecCD transport family RD08_RS15770 PF13174 Tetratricopeptide repeat RD08_RS15770 PF13432 Tetratricopeptide repeat RD08_RS15775 PF00691 OmpA family RD08_RS15780 PF04052 TolB amino-terminal domain RD08_RS15780 PF07676 WD40-like Beta Propeller Repeat RD08_RS15785 PF13103 TonB C terminal RD08_RS15790 PF02472 Biopolymer transport protein ExbD/TolR RD08_RS15795 PF01618 RD08_RS15795 RD08_RS15800 PF03061 Thioesterase superfamily RD08_RS15805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD08_RS15805 PF03129 Anticodon binding domain RD08_RS15805 PF04073 Aminoacyl-tRNA editing domain RD08_RS15810 PF00293 NUDIX domain RD08_RS15815 PF00072 Response regulator receiver domain RD08_RS15815 PF00486 Transcriptional regulatory protein, C terminal RD08_RS15820 PF08521 RD08_RS15820 RD08_RS15825 PF02586 Uncharacterised ACR, COG2135 RD08_RS15840 PF10721 RD08_RS15840 RD08_RS15850 PF16082 RD08_RS15850 RD08_RS15870 PF09327 RD08_RS15870 RD08_RS15870 PF13550 RD08_RS15870 RD08_RS15875 PF00877 NlpC/P60 family RD08_RS15880 PF08875 RD08_RS15880 RD08_RS15890 PF06791 RD08_RS15890 RD08_RS15890 PF09718 RD08_RS15890 RD08_RS15895 PF08809 RD08_RS15895 RD08_RS15900 PF08748 RD08_RS15900 RD08_RS15905 PF08813 RD08_RS15905 RD08_RS15910 PF13392 HNH endonuclease RD08_RS15915 PF13554 Bacteriophage related domain of unknown function RD08_RS15950 PF00665 Integrase core domain RD08_RS15950 PF13011 RD08_RS15950 RD08_RS15970 PF04233 RD08_RS15970 RD08_RS15975 PF13264 RD08_RS15975 RD08_RS15980 PF03237 Terminase-like family RD08_RS15990 PF00665 Integrase core domain RD08_RS15990 PF13011 RD08_RS15990 RD08_RS16020 PF00665 Integrase core domain RD08_RS16020 PF13011 RD08_RS16020 RD08_RS16030 PF03180 NLPA lipoprotein RD08_RS16035 PF06073 RD08_RS16035 RD08_RS16040 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RD08_RS16040 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RD08_RS16045 PF00005 ABC transporter RD08_RS16050 PF00005 ABC transporter RD08_RS16050 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS16055 PF02653 RD08_RS16055 RD08_RS16060 PF02653 RD08_RS16060 RD08_RS16065 PF13458 Periplasmic binding protein RD08_RS16070 PF01425 Amidase RD08_RS16075 PF00484 Carbonic anhydrase RD08_RS16085 PF00665 Integrase core domain RD08_RS16085 PF13011 RD08_RS16085 RD08_RS16090 PF00270 DEAD/DEAH box helicase RD08_RS16090 PF00271 Helicase conserved C-terminal domain RD08_RS16090 PF00570 HRDC domain RD08_RS16090 PF09382 RQC domain RD08_RS16090 PF16124 RD08_RS16090 RD08_RS16095 PF05491 Holliday junction DNA helicase ruvB C-terminus RD08_RS16095 PF05496 Holliday junction DNA helicase ruvB N-terminus RD08_RS16100 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS16105 PF01370 NAD dependent epimerase/dehydratase family RD08_RS16110 PF01330 RuvA N terminal domain RD08_RS16110 PF07499 RuvA, C-terminal domain RD08_RS16110 PF14520 Helix-hairpin-helix domain RD08_RS16115 PF02075 Crossover junction endodeoxyribonuclease RuvC RD08_RS16120 PF01808 AICARFT/IMPCHase bienzyme RD08_RS16120 PF02142 MGS-like domain RD08_RS16125 PF02954 Bacterial regulatory protein, Fis family RD08_RS16130 PF01207 Dihydrouridine synthase (Dus) RD08_RS16135 PF01494 FAD binding domain RD08_RS16145 PF00557 Metallopeptidase family M24 RD08_RS16145 PF05195 Aminopeptidase P, N-terminal domain RD08_RS16150 PF01699 Sodium/calcium exchanger protein RD08_RS16160 PF00665 Integrase core domain RD08_RS16160 PF13011 RD08_RS16160 RD08_RS16165 PF00665 Integrase core domain RD08_RS16165 PF13011 RD08_RS16165 RD08_RS16170 PF13609 Gram-negative porin RD08_RS16175 PF09678 RD08_RS16175 RD08_RS16180 PF00483 Nucleotidyl transferase RD08_RS16185 PF01435 Peptidase family M48 RD08_RS16190 PF12146 Putative lysophospholipase RD08_RS16195 PF13474 SnoaL-like domain RD08_RS16200 PF10276 Zinc-finger domain RD08_RS16205 PF01063 Aminotransferase class IV RD08_RS16210 PF03591 RD08_RS16210 RD08_RS16215 PF05437 RD08_RS16215 RD08_RS16220 PF00270 DEAD/DEAH box helicase RD08_RS16220 PF00271 Helicase conserved C-terminal domain RD08_RS16225 PF00085 Thioredoxin RD08_RS16230 PF07264 Etoposide-induced protein 2 RD08_RS16235 PF00665 Integrase core domain RD08_RS16235 PF13011 RD08_RS16235 RD08_RS16240 PF00994 Probable molybdopterin binding domain RD08_RS16245 PF01614 Bacterial transcriptional regulator RD08_RS16245 PF09339 IclR helix-turn-helix domain RD08_RS16250 PF05785 Rho-activating domain of cytotoxic necrotizing factor RD08_RS16255 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS16260 PF09361 RD08_RS16260 RD08_RS16265 PF01180 Dihydroorotate dehydrogenase RD08_RS16270 PF04376 RD08_RS16270 RD08_RS16270 PF04377 RD08_RS16270 RD08_RS16275 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RD08_RS16280 PF00293 NUDIX domain RD08_RS16280 PF14803 Nudix N-terminal RD08_RS16285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS16285 PF03466 LysR substrate binding domain RD08_RS16290 PF07681 RD08_RS16290 RD08_RS16295 PF11161 RD08_RS16295 RD08_RS16315 PF01810 RD08_RS16315 RD08_RS16320 PF00665 Integrase core domain RD08_RS16320 PF13011 RD08_RS16320 RD08_RS16325 PF00392 Bacterial regulatory proteins, gntR family RD08_RS16325 PF07729 FCD domain RD08_RS16330 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS16330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS16330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS16335 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS16340 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD08_RS16345 PF00390 Malic enzyme, N-terminal domain RD08_RS16345 PF01515 Phosphate acetyl/butaryl transferase RD08_RS16345 PF03949 Malic enzyme, NAD binding domain RD08_RS16350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS16350 PF03466 LysR substrate binding domain RD08_RS16355 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS16360 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS16365 PF00005 ABC transporter RD08_RS16365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS16375 PF07171 MlrC C-terminus RD08_RS16375 PF07364 Protein of unknown function (DUF1485) RD08_RS16380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS16380 PF03466 LysR substrate binding domain RD08_RS16390 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RD08_RS16395 PF12840 Helix-turn-helix domain RD08_RS16400 PF05170 RD08_RS16400 RD08_RS16405 PF03476 MOSC N-terminal beta barrel domain RD08_RS16410 PF03594 RD08_RS16410 RD08_RS16415 PF00037 4Fe-4S binding domain RD08_RS16420 PF01467 Cytidylyltransferase RD08_RS16425 PF03602 Conserved hypothetical protein 95 RD08_RS16430 PF00448 SRP54-type protein, GTPase domain RD08_RS16430 PF02881 SRP54-type protein, helical bundle domain RD08_RS16435 PF05235 CHAD domain RD08_RS16440 PF01928 CYTH domain RD08_RS16445 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS16450 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS16455 PF00005 ABC transporter RD08_RS16460 PF00665 Integrase core domain RD08_RS16460 PF13011 RD08_RS16460 RD08_RS16465 PF00005 ABC transporter RD08_RS16470 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein RD08_RS16475 PF01614 Bacterial transcriptional regulator RD08_RS16475 PF09339 IclR helix-turn-helix domain RD08_RS16480 PF08282 haloacid dehalogenase-like hydrolase RD08_RS16485 PF00925 GTP cyclohydrolase II RD08_RS16485 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD08_RS16490 PF00885 6,7-dimethyl-8-ribityllumazine synthase RD08_RS16495 PF01029 NusB family RD08_RS16500 PF00586 AIR synthase related protein, N-terminal domain RD08_RS16500 PF02769 AIR synthase related protein, C-terminal domain RD08_RS16505 PF04608 Phosphatidylglycerophosphatase A RD08_RS16510 PF02464 Competence-damaged protein RD08_RS16515 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RD08_RS16520 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS16525 PF01219 Prokaryotic diacylglycerol kinase RD08_RS16530 PF03631 RD08_RS16530 RD08_RS16535 PF03212 Pertactin RD08_RS16535 PF03797 Autotransporter beta-domain RD08_RS16540 PF00118 TCP-1/cpn60 chaperonin family RD08_RS16545 PF00166 Chaperonin 10 Kd subunit RD08_RS16565 PF00890 FAD binding domain RD08_RS16570 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS16575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS16575 PF03466 LysR substrate binding domain RD08_RS16580 PF00890 FAD binding domain RD08_RS16585 PF00665 Integrase core domain RD08_RS16585 PF13011 RD08_RS16585 RD08_RS16590 PF00665 Integrase core domain RD08_RS16590 PF13011 RD08_RS16590 RD08_RS16595 PF00665 Integrase core domain RD08_RS16595 PF13011 RD08_RS16595 RD08_RS16600 PF00857 Isochorismatase family RD08_RS16605 PF00990 GGDEF domain RD08_RS16605 PF11563 Protoglobin RD08_RS16610 PF01966 HD domain RD08_RS16640 PF03781 Sulfatase-modifying factor enzyme 1 RD08_RS16640 PF12867 DinB superfamily RD08_RS16645 PF10017 RD08_RS16645 RD08_RS16655 PF13091 PLD-like domain RD08_RS16660 PF00665 Integrase core domain RD08_RS16660 PF13011 RD08_RS16660 RD08_RS16665 PF01645 Conserved region in glutamate synthase RD08_RS16670 PF04143 RD08_RS16670 RD08_RS16675 PF03547 RD08_RS16675 RD08_RS16680 PF13673 Acetyltransferase (GNAT) domain RD08_RS16690 PF03942 RD08_RS16690 RD08_RS16700 PF00575 S1 RNA binding domain RD08_RS16700 PF00773 RNB domain RD08_RS16700 PF08206 Ribonuclease B OB domain RD08_RS16705 PF00588 SpoU rRNA Methylase family RD08_RS16705 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD08_RS16710 PF01053 Cys/Met metabolism PLP-dependent enzyme RD08_RS16715 PF13640 2OG-Fe(II) oxygenase superfamily RD08_RS16720 PF00216 Bacterial DNA-binding protein RD08_RS16730 PF03544 Gram-negative bacterial TonB protein C-terminal RD08_RS16735 PF01618 RD08_RS16735 RD08_RS16740 PF02472 Biopolymer transport protein ExbD/TolR RD08_RS16745 PF00072 Response regulator receiver domain RD08_RS16745 PF00486 Transcriptional regulatory protein, C terminal RD08_RS16750 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS16750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS16755 PF02705 RD08_RS16755 RD08_RS16760 PF00764 Arginosuccinate synthase RD08_RS16765 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD08_RS16765 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD08_RS16770 PF00202 Aminotransferase class-III RD08_RS16775 PF12112 Protein of unknown function (DUF3579) RD08_RS16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS16780 PF03466 LysR substrate binding domain RD08_RS16785 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS16790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD08_RS16790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD08_RS16795 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS16810 PF00392 Bacterial regulatory proteins, gntR family RD08_RS16810 PF07729 FCD domain RD08_RS16815 PF00665 Integrase core domain RD08_RS16815 PF13011 RD08_RS16815 RD08_RS16820 PF07690 Major Facilitator Superfamily RD08_RS16825 PF02311 AraC-like ligand binding domain RD08_RS16825 PF12833 Helix-turn-helix domain RD08_RS16830 PF02627 Carboxymuconolactone decarboxylase family RD08_RS16835 PF00578 AhpC/TSA family RD08_RS16840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS16850 PF00072 Response regulator receiver domain RD08_RS16850 PF00486 Transcriptional regulatory protein, C terminal RD08_RS16855 PF00814 Glycoprotease family RD08_RS16855 PF13673 Acetyltransferase (GNAT) domain RD08_RS16860 PF03167 Uracil DNA glycosylase superfamily RD08_RS16865 PF07690 Major Facilitator Superfamily RD08_RS16870 PF02463 RecF/RecN/SMC N terminal domain RD08_RS16870 PF06470 SMC proteins Flexible Hinge Domain RD08_RS16875 PF04354 ZipA, C-terminal FtsZ-binding domain RD08_RS16880 PF00533 BRCA1 C Terminus (BRCT) domain RD08_RS16880 PF01653 NAD-dependent DNA ligase adenylation domain RD08_RS16880 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RD08_RS16880 PF03120 NAD-dependent DNA ligase OB-fold domain RD08_RS16880 PF12826 Helix-hairpin-helix motif RD08_RS16880 PF14520 Helix-hairpin-helix domain RD08_RS16885 PF13616 PPIC-type PPIASE domain RD08_RS16885 PF13624 SurA N-terminal domain RD08_RS16890 PF01722 BolA-like protein RD08_RS16895 PF04279 RD08_RS16895 RD08_RS16900 PF01641 SelR domain RD08_RS16905 PF00005 ABC transporter RD08_RS16910 PF02361 Cobalt transport protein RD08_RS16915 PF02632 BioY family RD08_RS16920 PF13458 Periplasmic binding protein RD08_RS16925 PF02653 RD08_RS16925 RD08_RS16930 PF00005 ABC transporter RD08_RS16930 PF02653 RD08_RS16930 RD08_RS16935 PF01063 Aminotransferase class IV RD08_RS16940 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RD08_RS16945 PF02653 RD08_RS16945 RD08_RS16950 PF02653 RD08_RS16950 RD08_RS16955 PF13458 Periplasmic binding protein RD08_RS16960 PF00005 ABC transporter RD08_RS16965 PF00005 ABC transporter RD08_RS16965 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS16970 PF00633 Helix-hairpin-helix motif RD08_RS16970 PF00730 HhH-GPD superfamily base excision DNA repair protein RD08_RS16970 PF10576 Iron-sulfur binding domain of endonuclease III RD08_RS16975 PF04060 Putative Fe-S cluster RD08_RS16975 PF14697 4Fe-4S dicluster domain RD08_RS16980 PF06850 RD08_RS16980 RD08_RS16985 PF00175 Oxidoreductase NAD-binding domain RD08_RS16990 PF00037 4Fe-4S binding domain RD08_RS16990 PF11953 Domain of unknown function (DUF3470) RD08_RS16995 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RD08_RS17000 PF01042 Endoribonuclease L-PSP RD08_RS17005 PF03358 NADPH-dependent FMN reductase RD08_RS17010 PF06167 Glucose-regulated metallo-peptidase M90 RD08_RS17015 PF02824 TGS domain RD08_RS17015 PF04607 Region found in RelA / SpoT proteins RD08_RS17015 PF13291 ACT domain RD08_RS17015 PF13328 HD domain RD08_RS17020 PF01546 Peptidase family M20/M25/M40 RD08_RS17020 PF07687 Peptidase dimerisation domain RD08_RS17025 PF00291 Pyridoxal-phosphate dependent enzyme RD08_RS17030 PF00290 Tryptophan synthase alpha chain RD08_RS17035 PF01039 Carboxyl transferase domain RD08_RS17045 PF00665 Integrase core domain RD08_RS17045 PF13011 RD08_RS17045 RD08_RS17050 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family RD08_RS17055 PF00575 S1 RNA binding domain RD08_RS17055 PF10150 Ribonuclease E/G family RD08_RS17060 PF00849 RNA pseudouridylate synthase RD08_RS17060 PF01479 S4 domain RD08_RS17065 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS17070 PF00174 Oxidoreductase molybdopterin binding domain RD08_RS17075 PF01794 RD08_RS17075 RD08_RS17080 PF00665 Integrase core domain RD08_RS17080 PF13011 RD08_RS17080 RD08_RS17085 PF02515 CoA-transferase family III RD08_RS17090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17090 PF03466 LysR substrate binding domain RD08_RS17095 PF01575 MaoC like domain RD08_RS17100 PF02515 CoA-transferase family III RD08_RS17115 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17120 PF03466 LysR substrate binding domain RD08_RS17125 PF01042 Endoribonuclease L-PSP RD08_RS17130 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS17130 PF00175 Oxidoreductase NAD-binding domain RD08_RS17130 PF00384 Molybdopterin oxidoreductase RD08_RS17130 PF00970 Oxidoreductase FAD-binding domain RD08_RS17130 PF01568 Molydopterin dinucleotide binding domain RD08_RS17130 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RD08_RS17135 PF02667 RD08_RS17135 RD08_RS17140 PF00171 Aldehyde dehydrogenase family RD08_RS17145 PF00392 Bacterial regulatory proteins, gntR family RD08_RS17145 PF07729 FCD domain RD08_RS17155 PF00313 'Cold-shock' DNA-binding domain RD08_RS17160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17160 PF03466 LysR substrate binding domain RD08_RS17165 PF00665 Integrase core domain RD08_RS17165 PF13011 RD08_RS17165 RD08_RS17170 PF00665 Integrase core domain RD08_RS17170 PF13011 RD08_RS17170 RD08_RS17180 PF00108 Thiolase, N-terminal domain RD08_RS17180 PF02803 Thiolase, C-terminal domain RD08_RS17185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS17190 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS17190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS17195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17195 PF03466 LysR substrate binding domain RD08_RS17200 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17205 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS17210 PF02515 CoA-transferase family III RD08_RS17215 PF03741 RD08_RS17215 RD08_RS17220 PF02308 RD08_RS17220 RD08_RS17225 PF00009 Elongation factor Tu GTP binding domain RD08_RS17225 PF00679 Elongation factor G C-terminus RD08_RS17225 PF03144 Elongation factor Tu domain 2 RD08_RS17225 PF03764 Elongation factor G, domain IV RD08_RS17225 PF14492 Elongation Factor G, domain II RD08_RS17230 PF00155 Aminotransferase class I and II RD08_RS17230 PF00392 Bacterial regulatory proteins, gntR family RD08_RS17235 PF04273 Putative phosphatase (DUF442) RD08_RS17240 PF00582 Universal stress protein family RD08_RS17245 PF00009 Elongation factor Tu GTP binding domain RD08_RS17250 PF00665 Integrase core domain RD08_RS17250 PF13011 RD08_RS17250 RD08_RS17255 PF00701 Dihydrodipicolinate synthetase family RD08_RS17260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17260 PF03466 LysR substrate binding domain RD08_RS17265 PF02515 CoA-transferase family III RD08_RS17270 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS17275 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS17275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS17280 PF01575 MaoC like domain RD08_RS17290 PF01796 RD08_RS17290 RD08_RS17290 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) RD08_RS17295 PF00108 Thiolase, N-terminal domain RD08_RS17300 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS17305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS17305 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS17305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS17310 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17315 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS17315 PF13380 CoA binding domain RD08_RS17315 PF13549 ATP-grasp domain RD08_RS17315 PF13607 Succinyl-CoA ligase like flavodoxin domain RD08_RS17320 PF01614 Bacterial transcriptional regulator RD08_RS17320 PF09339 IclR helix-turn-helix domain RD08_RS17325 PF00676 Dehydrogenase E1 component RD08_RS17330 PF02779 Transketolase, pyrimidine binding domain RD08_RS17330 PF02780 Transketolase, C-terminal domain RD08_RS17335 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS17340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD08_RS17340 PF00364 Biotin-requiring enzyme RD08_RS17345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS17345 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS17345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS17350 PF00501 AMP-binding enzyme RD08_RS17350 PF13193 AMP-binding enzyme C-terminal domain RD08_RS17355 PF03972 MmgE/PrpD family RD08_RS17360 PF13458 Periplasmic binding protein RD08_RS17365 PF02653 RD08_RS17365 RD08_RS17370 PF00005 ABC transporter RD08_RS17370 PF02653 RD08_RS17370 RD08_RS17375 PF00005 ABC transporter RD08_RS17380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD08_RS17380 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS17385 PF00440 Bacterial regulatory proteins, tetR family RD08_RS17390 PF04909 Amidohydrolase RD08_RS17395 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17405 PF01614 Bacterial transcriptional regulator RD08_RS17405 PF09339 IclR helix-turn-helix domain RD08_RS17410 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17415 PF00665 Integrase core domain RD08_RS17415 PF13011 RD08_RS17415 RD08_RS17420 PF00899 ThiF family RD08_RS17425 PF00595 PDZ domain (Also known as DHR or GLGF) RD08_RS17425 PF03572 Peptidase family S41 RD08_RS17430 PF01551 Peptidase family M23 RD08_RS17435 PF00300 Histidine phosphatase superfamily (branch 1) RD08_RS17440 PF00581 Rhodanese-like domain RD08_RS17445 PF00462 Glutaredoxin RD08_RS17450 PF02556 Preprotein translocase subunit SecB RD08_RS17455 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RD08_RS17455 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RD08_RS17460 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17465 PF00588 SpoU rRNA Methylase family RD08_RS17470 PF00156 Phosphoribosyl transferase domain RD08_RS17475 PF08241 Methyltransferase domain RD08_RS17480 PF04107 Glutamate-cysteine ligase family 2(GCS2) RD08_RS17485 PF06808 RD08_RS17485 RD08_RS17490 PF04290 RD08_RS17490 RD08_RS17495 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS17500 PF00005 ABC transporter RD08_RS17505 PF09084 NMT1/THI5 like RD08_RS17510 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS17510 PF01799 [2Fe-2S] binding domain RD08_RS17510 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) RD08_RS17515 PF00941 FAD binding domain in molybdopterin dehydrogenase RD08_RS17520 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD08_RS17520 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD08_RS17525 PF03480 Bacterial extracellular solute-binding protein, family 7 RD08_RS17530 PF00355 Rieske [2Fe-2S] domain RD08_RS17535 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS17535 PF14759 Reductase C-terminal RD08_RS17540 PF00355 Rieske [2Fe-2S] domain RD08_RS17540 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD08_RS17545 PF00866 Ring hydroxylating beta subunit RD08_RS17550 PF00857 Isochorismatase family RD08_RS17560 PF00561 alpha/beta hydrolase fold RD08_RS17570 PF04909 Amidohydrolase RD08_RS17575 PF12804 MobA-like NTP transferase domain RD08_RS17580 PF02625 XdhC and CoxI family RD08_RS17580 PF13478 XdhC Rossmann domain RD08_RS17585 PF01047 MarR family RD08_RS17590 PF02386 Cation transport protein RD08_RS17595 PF02080 TrkA-C domain RD08_RS17595 PF02254 TrkA-N domain RD08_RS17600 PF00072 Response regulator receiver domain RD08_RS17605 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS17605 PF00672 HAMP domain RD08_RS17605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS17605 PF08448 PAS fold RD08_RS17610 PF14334 RD08_RS17610 RD08_RS17615 PF01189 NOL1/NOP2/sun family RD08_RS17620 PF01810 RD08_RS17620 RD08_RS17625 PF01958 Domain of unknown function DUF108 RD08_RS17625 PF03447 Homoserine dehydrogenase, NAD binding domain RD08_RS17630 PF13468 Glyoxalase-like domain RD08_RS17635 PF00665 Integrase core domain RD08_RS17635 PF13011 RD08_RS17635 RD08_RS17640 PF01810 RD08_RS17640 RD08_RS17645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17645 PF03466 LysR substrate binding domain RD08_RS17650 PF04314 Protein of unknown function (DUF461) RD08_RS17655 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17665 PF00155 Aminotransferase class I and II RD08_RS17670 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS17680 PF00682 HMGL-like RD08_RS17685 PF02481 DNA recombination-mediator protein A RD08_RS17690 PF01037 AsnC family RD08_RS17690 PF13412 Winged helix-turn-helix DNA-binding RD08_RS17695 PF00266 Aminotransferase class-V RD08_RS17700 PF01327 Polypeptide deformylase RD08_RS17705 PF00665 Integrase core domain RD08_RS17705 PF13011 RD08_RS17705 RD08_RS17710 PF00551 Formyl transferase RD08_RS17710 PF02911 Formyl transferase, C-terminal domain RD08_RS17715 PF01243 Pyridoxamine 5'-phosphate oxidase RD08_RS17720 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS17730 PF03641 Possible lysine decarboxylase RD08_RS17735 PF00210 Ferritin-like domain RD08_RS17740 PF00919 Uncharacterized protein family UPF0004 RD08_RS17740 PF04055 Radical SAM superfamily RD08_RS17745 PF01361 Tautomerase enzyme RD08_RS17750 PF01266 FAD dependent oxidoreductase RD08_RS17755 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17760 PF00392 Bacterial regulatory proteins, gntR family RD08_RS17760 PF07729 FCD domain RD08_RS17765 PF00665 Integrase core domain RD08_RS17765 PF13011 RD08_RS17765 RD08_RS17770 PF00202 Aminotransferase class-III RD08_RS17775 PF00491 Arginase family RD08_RS17780 PF00665 Integrase core domain RD08_RS17780 PF13011 RD08_RS17780 RD08_RS17785 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17790 PF02627 Carboxymuconolactone decarboxylase family RD08_RS17795 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS17800 PF01614 Bacterial transcriptional regulator RD08_RS17800 PF09339 IclR helix-turn-helix domain RD08_RS17805 PF00501 AMP-binding enzyme RD08_RS17805 PF13193 AMP-binding enzyme C-terminal domain RD08_RS17810 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS17815 PF04115 Ureidoglycolate hydrolase RD08_RS17820 PF03797 Autotransporter beta-domain RD08_RS17820 PF12951 RD08_RS17820 RD08_RS17825 PF08085 RD08_RS17825 RD08_RS17835 PF12167 RD08_RS17835 RD08_RS17840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17840 PF03466 LysR substrate binding domain RD08_RS17845 PF13419 Haloacid dehalogenase-like hydrolase RD08_RS17850 PF01168 Alanine racemase, N-terminal domain RD08_RS17850 PF14031 Putative serine dehydratase domain RD08_RS17855 PF07411 Domain of unknown function (DUF1508) RD08_RS17860 PF01145 SPFH domain / Band 7 family RD08_RS17865 PF14497 Glutathione S-transferase, C-terminal domain RD08_RS17870 PF01042 Endoribonuclease L-PSP RD08_RS17875 PF00665 Integrase core domain RD08_RS17875 PF13011 RD08_RS17875 RD08_RS17890 PF00665 Integrase core domain RD08_RS17890 PF13011 RD08_RS17890 RD08_RS17915 PF03837 RD08_RS17915 RD08_RS17920 PF09588 YqaJ-like viral recombinase domain RD08_RS17945 PF12728 Helix-turn-helix domain RD08_RS17950 PF00589 Phage integrase family RD08_RS17955 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS17955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS17955 PF08521 RD08_RS17955 RD08_RS17960 PF11516 Protein of unknown function (DUF3120) RD08_RS17970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS17970 PF03466 LysR substrate binding domain RD08_RS17975 PF02525 Flavodoxin-like fold RD08_RS17980 PF00665 Integrase core domain RD08_RS17980 PF13011 RD08_RS17980 RD08_RS17985 PF02096 60Kd inner membrane protein RD08_RS17985 PF14849 YidC periplasmic domain RD08_RS17990 PF01809 RD08_RS17990 RD08_RS17995 PF00825 Ribonuclease P RD08_RS18000 PF00468 Ribosomal protein L34 RD08_RS18005 PF00308 Bacterial dnaA protein RD08_RS18005 PF08299 Bacterial dnaA protein helix-turn-helix RD08_RS18005 PF11638 DnaA N-terminal domain RD08_RS18010 PF00712 DNA polymerase III beta subunit, N-terminal domain RD08_RS18010 PF02767 DNA polymerase III beta subunit, central domain RD08_RS18010 PF02768 DNA polymerase III beta subunit, C-terminal domain RD08_RS18015 PF00204 DNA gyrase B RD08_RS18015 PF00986 DNA gyrase B subunit, carboxyl terminus RD08_RS18015 PF01751 Toprim domain RD08_RS18015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS18020 PF01614 Bacterial transcriptional regulator RD08_RS18020 PF09339 IclR helix-turn-helix domain RD08_RS18025 PF01425 Amidase RD08_RS18030 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18040 PF01070 FMN-dependent dehydrogenase RD08_RS18045 PF06445 GyrI-like small molecule binding domain RD08_RS18045 PF12833 Helix-turn-helix domain RD08_RS18055 PF00665 Integrase core domain RD08_RS18055 PF13011 RD08_RS18055 RD08_RS18060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD08_RS18065 PF13411 MerR HTH family regulatory protein RD08_RS18070 PF00753 Metallo-beta-lactamase superfamily RD08_RS18075 PF00665 Integrase core domain RD08_RS18075 PF13011 RD08_RS18075 RD08_RS18080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD08_RS18080 PF02770 Acyl-CoA dehydrogenase, middle domain RD08_RS18090 PF00108 Thiolase, N-terminal domain RD08_RS18090 PF02803 Thiolase, C-terminal domain RD08_RS18095 PF01039 Carboxyl transferase domain RD08_RS18100 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RD08_RS18100 PF00364 Biotin-requiring enzyme RD08_RS18100 PF02785 Biotin carboxylase C-terminal domain RD08_RS18100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD08_RS18105 PF07866 Protein of unknown function (DUF1653) RD08_RS18110 PF00202 Aminotransferase class-III RD08_RS18115 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18120 PF01168 Alanine racemase, N-terminal domain RD08_RS18120 PF14031 Putative serine dehydratase domain RD08_RS18125 PF16868 RD08_RS18125 RD08_RS18130 PF06808 RD08_RS18130 RD08_RS18135 PF00593 TonB dependent receptor RD08_RS18135 PF07715 TonB-dependent Receptor Plug Domain RD08_RS18140 PF04361 RD08_RS18140 RD08_RS18150 PF09925 RD08_RS18150 RD08_RS18150 PF14345 RD08_RS18150 RD08_RS18150 PF14351 RD08_RS18150 RD08_RS18155 PF01131 DNA topoisomerase RD08_RS18155 PF01751 Toprim domain RD08_RS18155 PF13342 RD08_RS18155 RD08_RS18160 PF09084 NMT1/THI5 like RD08_RS18165 PF00005 ABC transporter RD08_RS18170 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS18175 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS18180 PF00171 Aldehyde dehydrogenase family RD08_RS18185 PF13561 Enoyl-(Acyl carrier protein) reductase RD08_RS18190 PF00205 Thiamine pyrophosphate enzyme, central domain RD08_RS18190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS18190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD08_RS18195 PF01037 AsnC family RD08_RS18195 PF13404 AsnC-type helix-turn-helix domain RD08_RS18200 PF01062 RD08_RS18200 RD08_RS18205 PF00856 SET domain RD08_RS18210 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD08_RS18220 PF00665 Integrase core domain RD08_RS18220 PF13011 RD08_RS18220 RD08_RS18225 PF00809 Pterin binding enzyme RD08_RS18225 PF02310 B12 binding domain RD08_RS18225 PF02574 Homocysteine S-methyltransferase RD08_RS18225 PF02607 B12 binding domain RD08_RS18225 PF02965 Vitamin B12 dependent methionine synthase, activation domain RD08_RS18230 PF00593 TonB dependent receptor RD08_RS18230 PF07715 TonB-dependent Receptor Plug Domain RD08_RS18235 PF01497 Periplasmic binding protein RD08_RS18240 PF05690 Thiazole biosynthesis protein ThiG RD08_RS18245 PF08543 Phosphomethylpyrimidine kinase RD08_RS18250 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RD08_RS18255 PF02321 Outer membrane efflux protein RD08_RS18260 PF02321 Outer membrane efflux protein RD08_RS18265 PF01467 Cytidylyltransferase RD08_RS18270 PF01548 RD08_RS18270 RD08_RS18270 PF02371 RD08_RS18270 RD08_RS18275 PF01594 RD08_RS18275 RD08_RS18280 PF05721 Phytanoyl-CoA dioxygenase (PhyH) RD08_RS18285 PF02254 TrkA-N domain RD08_RS18285 PF07885 Ion channel RD08_RS18290 PF00665 Integrase core domain RD08_RS18290 PF13011 RD08_RS18290 RD08_RS18295 PF00164 Ribosomal protein S12/S23 RD08_RS18300 PF00177 Ribosomal protein S7p/S5e RD08_RS18305 PF00009 Elongation factor Tu GTP binding domain RD08_RS18305 PF00679 Elongation factor G C-terminus RD08_RS18305 PF03144 Elongation factor Tu domain 2 RD08_RS18305 PF03764 Elongation factor G, domain IV RD08_RS18305 PF14492 Elongation Factor G, domain II RD08_RS18310 PF00009 Elongation factor Tu GTP binding domain RD08_RS18310 PF03143 Elongation factor Tu C-terminal domain RD08_RS18310 PF03144 Elongation factor Tu domain 2 RD08_RS18315 PF00338 Ribosomal protein S10p/S20e RD08_RS18320 PF00297 Ribosomal protein L3 RD08_RS18325 PF00573 Ribosomal protein L4/L1 family RD08_RS18330 PF00276 Ribosomal protein L23 RD08_RS18335 PF00181 Ribosomal Proteins L2, RNA binding domain RD08_RS18335 PF03947 Ribosomal Proteins L2, C-terminal domain RD08_RS18340 PF00203 Ribosomal protein S19 RD08_RS18345 PF00237 Ribosomal protein L22p/L17e RD08_RS18350 PF00189 Ribosomal protein S3, C-terminal domain RD08_RS18350 PF07650 KH domain RD08_RS18355 PF00252 Ribosomal protein L16p/L10e RD08_RS18360 PF00831 Ribosomal L29 protein RD08_RS18365 PF00366 Ribosomal protein S17 RD08_RS18370 PF00561 alpha/beta hydrolase fold RD08_RS18375 PF00171 Aldehyde dehydrogenase family RD08_RS18385 PF00238 Ribosomal protein L14p/L23e RD08_RS18390 PF17136 RD08_RS18390 RD08_RS18395 PF00281 Ribosomal protein L5 RD08_RS18395 PF00673 ribosomal L5P family C-terminus RD08_RS18400 PF00253 Ribosomal protein S14p/S29e RD08_RS18405 PF00410 Ribosomal protein S8 RD08_RS18410 PF00347 Ribosomal protein L6 RD08_RS18415 PF00861 Ribosomal L18p/L5e family RD08_RS18420 PF00333 Ribosomal protein S5, N-terminal domain RD08_RS18420 PF03719 Ribosomal protein S5, C-terminal domain RD08_RS18425 PF00327 Ribosomal protein L30p/L7e RD08_RS18430 PF00828 Ribosomal protein L18e/L15 RD08_RS18435 PF00344 SecY translocase RD08_RS18440 PF01176 Translation initiation factor 1A / IF-1 RD08_RS18445 PF00444 Ribosomal protein L36 RD08_RS18450 PF00416 Ribosomal protein S13/S18 RD08_RS18455 PF00411 Ribosomal protein S11 RD08_RS18460 PF00163 Ribosomal protein S4/S9 N-terminal domain RD08_RS18460 PF01479 S4 domain RD08_RS18465 PF01000 RNA polymerase Rpb3/RpoA insert domain RD08_RS18465 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RD08_RS18465 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RD08_RS18470 PF01196 Ribosomal protein L17 RD08_RS18480 PF03091 CutA1 divalent ion tolerance protein RD08_RS18485 PF02683 RD08_RS18485 RD08_RS18485 PF11412 Disulphide bond corrector protein DsbC RD08_RS18485 PF13899 Thioredoxin-like RD08_RS18490 PF00892 EamA-like transporter family RD08_RS18495 PF00490 Delta-aminolevulinic acid dehydratase RD08_RS18500 PF01926 50S ribosome-binding GTPase RD08_RS18505 PF00034 Cytochrome c RD08_RS18510 PF05140 RD08_RS18510 RD08_RS18515 PF01578 RD08_RS18515 RD08_RS18520 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD08_RS18520 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RD08_RS18525 PF01491 Frataxin-like domain RD08_RS18530 PF00905 Penicillin binding protein transpeptidase domain RD08_RS18530 PF00912 Transglycosylase RD08_RS18530 PF17092 RD08_RS18530 RD08_RS18535 PF01202 Shikimate kinase RD08_RS18540 PF01761 3-dehydroquinate synthase RD08_RS18545 PF01966 HD domain RD08_RS18545 PF13286 Phosphohydrolase-associated domain RD08_RS18550 PF13410 Glutathione S-transferase, C-terminal domain RD08_RS18550 PF13417 Glutathione S-transferase, N-terminal domain RD08_RS18560 PF07690 Major Facilitator Superfamily RD08_RS18565 PF00436 Single-strand binding protein family RD08_RS18570 PF00593 TonB dependent receptor RD08_RS18570 PF07715 TonB-dependent Receptor Plug Domain RD08_RS18575 PF12973 ChrR Cupin-like domain RD08_RS18580 PF03328 HpcH/HpaI aldolase/citrate lyase family RD08_RS18585 PF03328 HpcH/HpaI aldolase/citrate lyase family RD08_RS18590 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18595 PF00392 Bacterial regulatory proteins, gntR family RD08_RS18595 PF07702 UTRA domain RD08_RS18600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS18600 PF03466 LysR substrate binding domain RD08_RS18605 PF01979 Amidohydrolase family RD08_RS18610 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18615 PF00534 Glycosyl transferases group 1 RD08_RS18615 PF13439 Glycosyltransferase Family 4 RD08_RS18620 PF10707 RD08_RS18620 RD08_RS18625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS18625 PF03466 LysR substrate binding domain RD08_RS18630 PF09084 NMT1/THI5 like RD08_RS18635 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS18640 PF00005 ABC transporter RD08_RS18645 PF01266 FAD dependent oxidoreductase RD08_RS18655 PF00440 Bacterial regulatory proteins, tetR family RD08_RS18660 PF01274 Malate synthase RD08_RS18665 PF00392 Bacterial regulatory proteins, gntR family RD08_RS18665 PF07729 FCD domain RD08_RS18670 PF03435 Saccharopine dehydrogenase RD08_RS18670 PF16653 RD08_RS18670 RD08_RS18675 PF13663 RD08_RS18675 RD08_RS18680 PF01040 UbiA prenyltransferase family RD08_RS18685 PF00155 Aminotransferase class I and II RD08_RS18690 PF13185 GAF domain RD08_RS18695 PF00701 Dihydrodipicolinate synthetase family RD08_RS18700 PF00665 Integrase core domain RD08_RS18700 PF13011 RD08_RS18700 RD08_RS18705 PF01476 LysM domain RD08_RS18705 PF04972 BON domain RD08_RS18710 PF02597 ThiS family RD08_RS18715 PF00561 alpha/beta hydrolase fold RD08_RS18720 PF02390 Putative methyltransferase RD08_RS18725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS18725 PF03466 LysR substrate binding domain RD08_RS18735 PF00682 HMGL-like RD08_RS18740 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18750 PF00665 Integrase core domain RD08_RS18750 PF13011 RD08_RS18750 RD08_RS18755 PF00392 Bacterial regulatory proteins, gntR family RD08_RS18760 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18765 PF09084 NMT1/THI5 like RD08_RS18770 PF00392 Bacterial regulatory proteins, gntR family RD08_RS18770 PF07702 UTRA domain RD08_RS18775 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS18780 PF09084 NMT1/THI5 like RD08_RS18785 PF00005 ABC transporter RD08_RS18790 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS18795 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS18800 PF00107 Zinc-binding dehydrogenase RD08_RS18800 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS18805 PF02515 CoA-transferase family III RD08_RS18810 PF00440 Bacterial regulatory proteins, tetR family RD08_RS18815 PF00293 NUDIX domain RD08_RS18815 PF09297 NADH pyrophosphatase zinc ribbon domain RD08_RS18820 PF00111 2Fe-2S iron-sulfur cluster binding domain RD08_RS18820 PF00175 Oxidoreductase NAD-binding domain RD08_RS18820 PF00970 Oxidoreductase FAD-binding domain RD08_RS18825 PF01425 Amidase RD08_RS18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD08_RS18835 PF03466 LysR substrate binding domain RD08_RS18840 PF13458 Periplasmic binding protein RD08_RS18845 PF06545 Protein of unknown function (DUF1116) RD08_RS18850 PF00005 ABC transporter RD08_RS18850 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD08_RS18855 PF02653 RD08_RS18855 RD08_RS18860 PF02653 RD08_RS18860 RD08_RS18870 PF00355 Rieske [2Fe-2S] domain RD08_RS18885 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RD08_RS18885 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RD08_RS18890 PF00665 Integrase core domain RD08_RS18890 PF13011 RD08_RS18890 RD08_RS18895 PF00534 Glycosyl transferases group 1 RD08_RS18895 PF13439 Glycosyltransferase Family 4 RD08_RS18900 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD08_RS18900 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD08_RS18900 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD08_RS18905 PF07690 Major Facilitator Superfamily RD08_RS18910 PF00132 Bacterial transferase hexapeptide (six repeats) RD08_RS18910 PF12804 MobA-like NTP transferase domain RD08_RS18920 PF05433 RD08_RS18920 RD08_RS18925 PF12512 RD08_RS18925 RD08_RS18930 PF02630 SCO1/SenC RD08_RS18935 PF01040 UbiA prenyltransferase family RD08_RS18940 PF02628 RD08_RS18940 RD08_RS18950 PF02104 RD08_RS18950 RD08_RS18955 PF11137 RD08_RS18955 RD08_RS18960 PF00510 Cytochrome c oxidase subunit III RD08_RS18965 PF11174 RD08_RS18965 RD08_RS18975 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD08_RS18980 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD08_RS18980 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RD08_RS18980 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD08_RS18985 PF00293 NUDIX domain RD08_RS18990 PF00027 Cyclic nucleotide-binding domain RD08_RS18990 PF00999 Sodium/hydrogen exchanger family RD08_RS18995 PF00149 Calcineurin-like phosphoesterase RD08_RS19000 PF00140 Sigma-70 factor, region 1 RD08_RS19000 PF04542 Sigma-70 region 2 RD08_RS19000 PF04545 Sigma-70, region 4 RD08_RS19010 PF00756 Putative esterase RD08_RS19015 PF00107 Zinc-binding dehydrogenase RD08_RS19015 PF08240 Alcohol dehydrogenase GroES-like domain RD08_RS19025 PF00310 Glutamine amidotransferases class-II RD08_RS19025 PF01493 GXGXG motif RD08_RS19025 PF01645 Conserved region in glutamate synthase RD08_RS19025 PF04898 Glutamate synthase central domain RD08_RS19030 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD08_RS19030 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RD08_RS19035 PF03922 OmpW family RD08_RS19040 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19045 PF00005 ABC transporter RD08_RS19050 PF02405 RD08_RS19050 RD08_RS19055 PF02470 RD08_RS19055 RD08_RS19060 PF04333 RD08_RS19060 RD08_RS19065 PF05494 Toluene tolerance, Ttg2 RD08_RS19070 PF00005 ABC transporter RD08_RS19075 PF01061 RD08_RS19075 RD08_RS19080 PF01722 BolA-like protein RD08_RS19085 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD08_RS19090 PF01634 ATP phosphoribosyltransferase RD08_RS19095 PF00815 Histidinol dehydrogenase RD08_RS19100 PF00155 Aminotransferase class I and II RD08_RS19105 PF00475 Imidazoleglycerol-phosphate dehydratase RD08_RS19110 PF00117 Glutamine amidotransferase class-I RD08_RS19115 PF00977 Histidine biosynthesis protein RD08_RS19120 PF00977 Histidine biosynthesis protein RD08_RS19125 PF01502 Phosphoribosyl-AMP cyclohydrolase RD08_RS19130 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RD08_RS19135 PF01230 HIT domain RD08_RS19140 PF02416 mttA/Hcf106 family RD08_RS19145 PF02416 mttA/Hcf106 family RD08_RS19150 PF00902 Sec-independent protein translocase protein (TatC) RD08_RS19155 PF13560 Helix-turn-helix domain RD08_RS19155 PF13683 RD08_RS19155 RD08_RS19160 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19165 PF02917 Pertussis toxin, subunit 1 RD08_RS19170 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD08_RS19170 PF03440 Aerolysin/Pertussis toxin (APT) domain RD08_RS19175 PF09275 Pertussis toxin S4 subunit RD08_RS19180 PF09276 Pertussis toxin S5 subunit RD08_RS19185 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD08_RS19185 PF03440 Aerolysin/Pertussis toxin (APT) domain RD08_RS19190 PF04956 RD08_RS19190 RD08_RS19195 PF05101 RD08_RS19195 RD08_RS19200 PF03135 RD08_RS19200 RD08_RS19205 PF04610 RD08_RS19205 RD08_RS19215 PF04335 VirB8 protein RD08_RS19220 PF03524 Conjugal transfer protein RD08_RS19225 PF03743 Bacterial conjugation TrbI-like protein RD08_RS19230 PF00437 Type II/IV secretion system protein RD08_RS19240 PF00892 EamA-like transporter family RD08_RS19245 PF12833 Helix-turn-helix domain RD08_RS19250 PF06803 RD08_RS19250 RD08_RS19255 PF11067 RD08_RS19255 RD08_RS19260 PF01926 50S ribosome-binding GTPase RD08_RS19260 PF11981 RD08_RS19260 RD08_RS19265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS19270 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19275 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19275 PF12911 RD08_RS19275 RD08_RS19280 PF00005 ABC transporter RD08_RS19285 PF00665 Integrase core domain RD08_RS19285 PF13011 RD08_RS19285 RD08_RS19290 PF01960 ArgJ family RD08_RS19295 PF05673 Protein of unknown function (DUF815) RD08_RS19300 PF00293 NUDIX domain RD08_RS19300 PF02581 Thiamine monophosphate synthase/TENI RD08_RS19305 PF00665 Integrase core domain RD08_RS19305 PF13011 RD08_RS19305 RD08_RS19310 PF00665 Integrase core domain RD08_RS19310 PF13011 RD08_RS19310 RD08_RS19315 PF00665 Integrase core domain RD08_RS19315 PF13011 RD08_RS19315 RD08_RS19320 PF02321 Outer membrane efflux protein RD08_RS19325 PF00873 AcrB/AcrD/AcrF family RD08_RS19330 PF00873 AcrB/AcrD/AcrF family RD08_RS19335 PF13437 HlyD family secretion protein RD08_RS19335 PF13533 Biotin-lipoyl like RD08_RS19340 PF07072 Protein of unknown function (DUF1342) RD08_RS19345 PF01121 Dephospho-CoA kinase RD08_RS19350 PF01478 Type IV leader peptidase family RD08_RS19350 PF06750 RD08_RS19350 RD08_RS19355 PF04170 NlpE N-terminal domain RD08_RS19360 PF00196 Bacterial regulatory proteins, luxR family RD08_RS19365 PF02569 Pantoate-beta-alanine ligase RD08_RS19370 PF02616 ScpA/B protein RD08_RS19375 PF11943 RD08_RS19375 RD08_RS19380 PF07690 Major Facilitator Superfamily RD08_RS19385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RD08_RS19385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RD08_RS19390 PF03653 RD08_RS19390 RD08_RS19395 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19400 PF00005 ABC transporter RD08_RS19405 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19410 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19415 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD08_RS19420 PF00005 ABC transporter RD08_RS19425 PF02687 RD08_RS19425 RD08_RS19430 PF03975 CheD chemotactic sensory transduction RD08_RS19435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD08_RS19440 PF00633 Helix-hairpin-helix motif RD08_RS19440 PF00730 HhH-GPD superfamily base excision DNA repair protein RD08_RS19440 PF14815 NUDIX domain RD08_RS19445 PF13560 Helix-turn-helix domain RD08_RS19450 PF08241 Methyltransferase domain RD08_RS19455 PF00665 Integrase core domain RD08_RS19455 PF13011 RD08_RS19455 RD08_RS19460 PF02515 CoA-transferase family III RD08_RS19465 PF02515 CoA-transferase family III RD08_RS19470 PF03972 MmgE/PrpD family RD08_RS19475 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19480 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS19485 PF00881 Nitroreductase family RD08_RS19490 PF00440 Bacterial regulatory proteins, tetR family RD08_RS19495 PF00682 HMGL-like RD08_RS19500 PF00378 Enoyl-CoA hydratase/isomerase family RD08_RS19505 PF02515 CoA-transferase family III RD08_RS19510 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19515 PF00665 Integrase core domain RD08_RS19515 PF13011 RD08_RS19515 RD08_RS19520 PF00199 Catalase RD08_RS19520 PF06628 Catalase-related immune-responsive RD08_RS19525 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19530 PF00005 ABC transporter RD08_RS19535 PF13379 NMT1-like family RD08_RS19540 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD08_RS19545 PF01546 Peptidase family M20/M25/M40 RD08_RS19545 PF07687 Peptidase dimerisation domain RD08_RS19550 PF00005 ABC transporter RD08_RS19550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS19555 PF00005 ABC transporter RD08_RS19555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD08_RS19560 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19560 PF12911 RD08_RS19560 RD08_RS19565 PF00528 Binding-protein-dependent transport system inner membrane component RD08_RS19570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD08_RS19575 PF01926 50S ribosome-binding GTPase RD08_RS19575 PF10396 GTP-binding protein TrmE N-terminus RD08_RS19575 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE RD08_RS19580 PF07690 Major Facilitator Superfamily RD08_RS19585 PF00072 Response regulator receiver domain RD08_RS19585 PF00486 Transcriptional regulatory protein, C terminal RD08_RS19590 PF00512 His Kinase A (phospho-acceptor) domain RD08_RS19590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD08_RS19590 PF08521 RD08_RS19590 RD08_RS19595 PF03401 Tripartite tricarboxylate transporter family receptor RD08_RS19600 PF07331 RD08_RS19600 RD08_RS19605 PF01970 RD08_RS19605 RD08_RS19610 PF00155 Aminotransferase class I and II RD08_RS19615 PF00313 'Cold-shock' DNA-binding domain