locus-tag class description RD09_RS00005 PF01134 Glucose inhibited division protein A RD09_RS00005 PF13932 GidA associated domain RD09_RS00010 PF02527 rRNA small subunit methyltransferase G RD09_RS00015 PF13614 AAA domain RD09_RS00025 PF02195 ParB-like nuclease domain RD09_RS00025 PF17762 HTH domain found in ParB protein RD09_RS00030 PF17763 Glutaminase/Asparaginase C-terminal domain RD09_RS00030 PF00710 Asparaginase, N-terminal RD09_RS00035 PF17763 Glutaminase/Asparaginase C-terminal domain RD09_RS00035 PF00710 Asparaginase, N-terminal RD09_RS00055 PF03144 Elongation factor Tu domain 2 RD09_RS00055 PF03143 Elongation factor Tu C-terminal domain RD09_RS00055 PF00009 Elongation factor Tu GTP binding domain RD09_RS00065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RD09_RS00070 PF02357 Transcription termination factor nusG RD09_RS00070 PF00467 KOW motif RD09_RS00075 PF00298 Ribosomal protein L11, RNA binding domain RD09_RS00075 PF03946 Ribosomal protein L11, N-terminal domain RD09_RS00080 PF00687 Ribosomal protein L1p/L10e family RD09_RS00085 PF00466 Ribosomal protein L10 RD09_RS00090 PF16320 Ribosomal protein L7/L12 dimerisation domain RD09_RS00090 PF00542 Ribosomal protein L7/L12 C-terminal domain RD09_RS00095 PF04560 RNA polymerase Rpb2, domain 7 RD09_RS00095 PF00562 RNA polymerase Rpb2, domain 6 RD09_RS00095 PF10385 RNA polymerase beta subunit external 1 domain RD09_RS00095 PF04565 RNA polymerase Rpb2, domain 3 RD09_RS00095 PF04561 RNA polymerase Rpb2, domain 2 RD09_RS00095 PF04563 RNA polymerase beta subunit RD09_RS00100 PF04998 RNA polymerase Rpb1, domain 5 RD09_RS00100 PF05000 RNA polymerase Rpb1, domain 4 RD09_RS00100 PF04983 RNA polymerase Rpb1, domain 3 RD09_RS00100 PF00623 RNA polymerase Rpb1, domain 2 RD09_RS00100 PF04997 RNA polymerase Rpb1, domain 1 RD09_RS00130 PF00486 Transcriptional regulatory protein, C terminal RD09_RS00130 PF00072 Response regulator receiver domain RD09_RS00140 PF02515 CoA-transferase family III RD09_RS00155 PF01575 MaoC like domain RD09_RS00160 PF03466 LysR substrate binding domain RD09_RS00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS00165 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS00185 PF02091 Glycyl-tRNA synthetase alpha subunit RD09_RS00190 PF02092 Glycyl-tRNA synthetase beta subunit RD09_RS00190 PF05746 DALR anticodon binding domain RD09_RS00200 PF01553 Acyltransferase RD09_RS00210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD09_RS00215 PF01327 Polypeptide deformylase RD09_RS00250 PF02615 Malate/L-lactate dehydrogenase RD09_RS00255 PF00561 alpha/beta hydrolase fold RD09_RS00260 PF07021 Methionine biosynthesis protein MetW RD09_RS00260 PF00561 alpha/beta hydrolase fold RD09_RS00270 PF07690 Major Facilitator Superfamily RD09_RS00280 PF01177 Asp/Glu/Hydantoin racemase RD09_RS00285 PF00005 ABC transporter RD09_RS00290 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS00295 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS00300 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS00330 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS00345 PF00970 Oxidoreductase FAD-binding domain RD09_RS00345 PF00175 Oxidoreductase NAD-binding domain RD09_RS00345 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS00350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD09_RS00360 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS00390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS00390 PF00183 Hsp90 protein RD09_RS00395 PF00043 Glutathione S-transferase, C-terminal domain RD09_RS00395 PF13417 Glutathione S-transferase, N-terminal domain RD09_RS00400 PF01510 N-acetylmuramoyl-L-alanine amidase RD09_RS00410 PF01578 Cytochrome C assembly protein RD09_RS00415 PF02978 Signal peptide binding domain RD09_RS00415 PF02881 SRP54-type protein, helical bundle domain RD09_RS00415 PF00448 SRP54-type protein, GTPase domain RD09_RS00430 PF02719 Polysaccharide biosynthesis protein RD09_RS00440 PF10997 Alternate to MurJ RD09_RS00445 PF00534 Glycosyl transferases group 1 RD09_RS00445 PF00862 Sucrose synthase RD09_RS00450 PF02397 Bacterial sugar transferase RD09_RS00455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD09_RS00465 PF02350 UDP-N-acetylglucosamine 2-epimerase RD09_RS00470 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD09_RS00475 PF00132 Bacterial transferase hexapeptide (six repeats) RD09_RS00480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RD09_RS00480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RD09_RS00485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD09_RS00490 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RD09_RS00490 PF00534 Glycosyl transferases group 1 RD09_RS00500 PF03309 Type III pantothenate kinase RD09_RS00510 PF02405 Permease MlaE RD09_RS00515 PF00005 ABC transporter RD09_RS00540 PF00768 D-alanyl-D-alanine carboxypeptidase RD09_RS00540 PF07943 Penicillin-binding protein 5, C-terminal domain RD09_RS00545 PF01063 Amino-transferase class IV RD09_RS00550 PF04359 Protein of unknown function (DUF493) RD09_RS00555 PF03099 Biotin/lipoate A/B protein ligase family RD09_RS00560 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RD09_RS00560 PF04055 Radical SAM superfamily RD09_RS00565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RD09_RS00570 PF04321 RmlD substrate binding domain RD09_RS00575 PF16363 GDP-mannose 4,6 dehydratase RD09_RS00590 PF01053 Cys/Met metabolism PLP-dependent enzyme RD09_RS00595 PF01323 DSBA-like thioredoxin domain RD09_RS00595 PF00085 Thioredoxin RD09_RS00605 PF05746 DALR anticodon binding domain RD09_RS00605 PF03485 Arginyl tRNA synthetase N terminal domain RD09_RS00605 PF00750 tRNA synthetases class I (R) RD09_RS00625 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS00630 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS00635 PF13416 Bacterial extracellular solute-binding protein RD09_RS00640 PF17912 MalK OB fold domain RD09_RS00640 PF00005 ABC transporter RD09_RS00645 PF00149 Calcineurin-like phosphoesterase RD09_RS00650 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RD09_RS00650 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RD09_RS00665 PF00355 Rieske [2Fe-2S] domain RD09_RS00675 PF02653 Branched-chain amino acid transport system / permease component RD09_RS00685 PF00005 ABC transporter RD09_RS00695 PF13458 Periplasmic binding protein RD09_RS00700 PF03466 LysR substrate binding domain RD09_RS00700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS00710 PF01425 Amidase RD09_RS00715 PF00970 Oxidoreductase FAD-binding domain RD09_RS00715 PF00175 Oxidoreductase NAD-binding domain RD09_RS00715 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS00720 PF00293 NUDIX domain RD09_RS00720 PF09297 NADH pyrophosphatase zinc ribbon domain RD09_RS00725 PF00440 Bacterial regulatory proteins, tetR family RD09_RS00730 PF02515 CoA-transferase family III RD09_RS00735 PF14765 Polyketide synthase dehydratase RD09_RS00735 PF08659 KR domain RD09_RS00735 PF08990 Erythronolide synthase docking RD09_RS00735 PF16197 Ketoacyl-synthetase C-terminal extension RD09_RS00735 PF00109 Beta-ketoacyl synthase, N-terminal domain RD09_RS00735 PF08240 Alcohol dehydrogenase GroES-like domain RD09_RS00735 PF00550 Phosphopantetheine attachment site RD09_RS00735 PF00698 Acyl transferase domain RD09_RS00735 PF02801 Beta-ketoacyl synthase, C-terminal domain RD09_RS00740 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS00745 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS00750 PF00005 ABC transporter RD09_RS00760 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS00765 PF07702 UTRA domain RD09_RS00765 PF00392 Bacterial regulatory proteins, gntR family RD09_RS00775 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS00780 PF00392 Bacterial regulatory proteins, gntR family RD09_RS00780 PF07702 UTRA domain RD09_RS00795 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS00800 PF00682 HMGL-like RD09_RS00815 PF02390 Putative methyltransferase RD09_RS00820 PF00561 alpha/beta hydrolase fold RD09_RS00825 PF05690 Thiazole biosynthesis protein ThiG RD09_RS00825 PF02597 ThiS family RD09_RS00830 PF04972 BON domain RD09_RS00830 PF01476 LysM domain RD09_RS00840 PF00701 Dihydrodipicolinate synthetase family RD09_RS00845 PF13185 GAF domain RD09_RS00850 PF00155 Aminotransferase class I and II RD09_RS00855 PF01040 UbiA prenyltransferase family RD09_RS00870 PF00392 Bacterial regulatory proteins, gntR family RD09_RS00870 PF07729 FCD domain RD09_RS00875 PF01274 Malate synthase RD09_RS00895 PF00005 ABC transporter RD09_RS00900 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS00910 PF03466 LysR substrate binding domain RD09_RS00910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS00920 PF13439 Glycosyltransferase Family 4 RD09_RS00920 PF00534 Glycosyl transferases group 1 RD09_RS00925 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS00930 PF01979 Amidohydrolase family RD09_RS00935 PF03466 LysR substrate binding domain RD09_RS00935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS00945 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS00955 PF03328 HpcH/HpaI aldolase/citrate lyase family RD09_RS00965 PF07715 TonB-dependent Receptor Plug Domain RD09_RS00965 PF00593 TonB dependent receptor RD09_RS00970 PF00436 Single-strand binding protein family RD09_RS00975 PF07690 Major Facilitator Superfamily RD09_RS00980 PF17755 UvrA DNA-binding domain RD09_RS00980 PF17760 UvrA interaction domain RD09_RS00985 PF00043 Glutathione S-transferase, C-terminal domain RD09_RS00985 PF13417 Glutathione S-transferase, N-terminal domain RD09_RS00990 PF13286 Phosphohydrolase-associated domain RD09_RS00990 PF01966 HD domain RD09_RS00995 PF01761 3-dehydroquinate synthase RD09_RS01000 PF01202 Shikimate kinase RD09_RS01005 PF00912 Transglycosylase RD09_RS01005 PF17092 Penicillin-binding protein OB-like domain RD09_RS01005 PF00905 Penicillin binding protein transpeptidase domain RD09_RS01010 PF01491 Frataxin-like domain RD09_RS01015 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RD09_RS01015 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD09_RS01020 PF01578 Cytochrome C assembly protein RD09_RS01025 PF05140 ResB-like family RD09_RS01030 PF00034 Cytochrome c RD09_RS01035 PF01926 50S ribosome-binding GTPase RD09_RS01040 PF00490 Delta-aminolevulinic acid dehydratase RD09_RS01045 PF00892 EamA-like transporter family RD09_RS01050 PF11412 Disulphide bond corrector protein DsbC RD09_RS01050 PF02683 Cytochrome C biogenesis protein transmembrane region RD09_RS01055 PF03091 CutA1 divalent ion tolerance protein RD09_RS01060 PF01230 HIT domain RD09_RS01065 PF01196 Ribosomal protein L17 RD09_RS01070 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RD09_RS01070 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RD09_RS01070 PF01000 RNA polymerase Rpb3/RpoA insert domain RD09_RS01075 PF01479 S4 domain RD09_RS01075 PF00163 Ribosomal protein S4/S9 N-terminal domain RD09_RS01080 PF00411 Ribosomal protein S11 RD09_RS01085 PF00416 Ribosomal protein S13/S18 RD09_RS01090 PF00444 Ribosomal protein L36 RD09_RS01095 PF01176 Translation initiation factor 1A / IF-1 RD09_RS01100 PF00344 SecY translocase RD09_RS01105 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RD09_RS01110 PF00327 Ribosomal protein L30p/L7e RD09_RS01115 PF00333 Ribosomal protein S5, N-terminal domain RD09_RS01115 PF03719 Ribosomal protein S5, C-terminal domain RD09_RS01120 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RD09_RS01125 PF00347 Ribosomal protein L6 RD09_RS01130 PF00410 Ribosomal protein S8 RD09_RS01135 PF00253 Ribosomal protein S14p/S29e RD09_RS01140 PF00673 ribosomal L5P family C-terminus RD09_RS01140 PF00281 Ribosomal protein L5 RD09_RS01145 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RD09_RS01150 PF00238 Ribosomal protein L14p/L23e RD09_RS01160 PF00171 Aldehyde dehydrogenase family RD09_RS01170 PF00366 Ribosomal protein S17 RD09_RS01175 PF00831 Ribosomal L29 protein RD09_RS01180 PF00252 Ribosomal protein L16p/L10e RD09_RS01185 PF00189 Ribosomal protein S3, C-terminal domain RD09_RS01185 PF07650 KH domain RD09_RS01190 PF00237 Ribosomal protein L22p/L17e RD09_RS01195 PF00203 Ribosomal protein S19 RD09_RS01200 PF00181 Ribosomal Proteins L2, RNA binding domain RD09_RS01200 PF03947 Ribosomal Proteins L2, C-terminal domain RD09_RS01205 PF00276 Ribosomal protein L23 RD09_RS01210 PF00573 Ribosomal protein L4/L1 family RD09_RS01215 PF00297 Ribosomal protein L3 RD09_RS01220 PF00338 Ribosomal protein S10p/S20e RD09_RS01225 PF00009 Elongation factor Tu GTP binding domain RD09_RS01225 PF03144 Elongation factor Tu domain 2 RD09_RS01225 PF03143 Elongation factor Tu C-terminal domain RD09_RS01230 PF00679 Elongation factor G C-terminus RD09_RS01230 PF14492 Elongation Factor G, domain II RD09_RS01230 PF03764 Elongation factor G, domain IV RD09_RS01230 PF03144 Elongation factor Tu domain 2 RD09_RS01230 PF00009 Elongation factor Tu GTP binding domain RD09_RS01235 PF00177 Ribosomal protein S7p/S5e RD09_RS01240 PF00164 Ribosomal protein S12/S23 RD09_RS01250 PF07885 Ion channel RD09_RS01250 PF02254 TrkA-N domain RD09_RS01260 PF01594 AI-2E family transporter RD09_RS01270 PF01467 Cytidylyltransferase-like RD09_RS01275 PF02321 Outer membrane efflux protein RD09_RS01290 PF08543 Phosphomethylpyrimidine kinase RD09_RS01295 PF05690 Thiazole biosynthesis protein ThiG RD09_RS01300 PF01497 Periplasmic binding protein RD09_RS01305 PF00593 TonB dependent receptor RD09_RS01305 PF07715 TonB-dependent Receptor Plug Domain RD09_RS01310 PF00809 Pterin binding enzyme RD09_RS01310 PF02607 B12 binding domain RD09_RS01310 PF02310 B12 binding domain RD09_RS01310 PF02574 Homocysteine S-methyltransferase RD09_RS01310 PF02965 Vitamin B12 dependent methionine synthase, activation domain RD09_RS01325 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD09_RS01335 PF01062 Bestrophin, RFP-TM, chloride channel RD09_RS01340 PF01037 Lrp/AsnC ligand binding domain RD09_RS01345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD09_RS01345 PF00205 Thiamine pyrophosphate enzyme, central domain RD09_RS01345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD09_RS01355 PF00171 Aldehyde dehydrogenase family RD09_RS01365 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS01370 PF00005 ABC transporter RD09_RS01380 PF01751 Toprim domain RD09_RS01380 PF01131 DNA topoisomerase RD09_RS01395 PF04361 Protein of unknown function (DUF494) RD09_RS01400 PF07715 TonB-dependent Receptor Plug Domain RD09_RS01400 PF00593 TonB dependent receptor RD09_RS01410 PF16868 NMT1-like family RD09_RS01415 PF14031 Putative serine dehydratase domain RD09_RS01415 PF01168 Alanine racemase, N-terminal domain RD09_RS01420 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS01425 PF00202 Aminotransferase class-III RD09_RS01435 PF02785 Biotin carboxylase C-terminal domain RD09_RS01435 PF00364 Biotin-requiring enzyme RD09_RS01435 PF00289 Biotin carboxylase, N-terminal domain RD09_RS01435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD09_RS01440 PF01039 Carboxyl transferase domain RD09_RS01445 PF00108 Thiolase, N-terminal domain RD09_RS01445 PF02803 Thiolase, C-terminal domain RD09_RS01455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS01455 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS01455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS01470 PF00376 MerR family regulatory protein RD09_RS01470 PF09278 MerR, DNA binding RD09_RS01475 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS01475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS01475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS01495 PF01070 FMN-dependent dehydrogenase RD09_RS01505 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS01510 PF01425 Amidase RD09_RS01515 PF09339 IclR helix-turn-helix domain RD09_RS01515 PF01614 Bacterial transcriptional regulator RD09_RS01520 PF18053 DNA gyrase B subunit insert domain RD09_RS01520 PF00204 DNA gyrase B RD09_RS01520 PF00986 DNA gyrase B subunit, carboxyl terminus RD09_RS01520 PF01751 Toprim domain RD09_RS01520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS01525 PF02767 DNA polymerase III beta subunit, central domain RD09_RS01525 PF02768 DNA polymerase III beta subunit, C-terminal domain RD09_RS01525 PF00712 DNA polymerase III beta subunit, N-terminal domain RD09_RS01530 PF11638 DnaA N-terminal domain RD09_RS01530 PF00308 Bacterial dnaA protein RD09_RS01530 PF08299 Bacterial dnaA protein helix-turn-helix RD09_RS01535 PF00468 Ribosomal protein L34 RD09_RS01540 PF00825 Ribonuclease P RD09_RS01545 PF01809 Putative membrane protein insertion efficiency factor RD09_RS01550 PF02096 60Kd inner membrane protein RD09_RS01550 PF14849 YidC periplasmic domain RD09_RS01560 PF02525 Flavodoxin-like fold RD09_RS01565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS01565 PF03466 LysR substrate binding domain RD09_RS01580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS01580 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS01585 PF00589 Phage integrase family RD09_RS01620 PF03837 RecT family RD09_RS01665 PF01042 Endoribonuclease L-PSP RD09_RS01675 PF01145 SPFH domain / Band 7 family RD09_RS01680 PF07411 Domain of unknown function (DUF1508) RD09_RS01685 PF01168 Alanine racemase, N-terminal domain RD09_RS01685 PF14031 Putative serine dehydratase domain RD09_RS01695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS01695 PF03466 LysR substrate binding domain RD09_RS01715 PF12951 Passenger-associated-transport-repeat RD09_RS01715 PF12951 Passenger-associated-transport-repeat RD09_RS01725 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS01730 PF00501 AMP-binding enzyme RD09_RS01730 PF13193 AMP-binding enzyme C-terminal domain RD09_RS01735 PF01614 Bacterial transcriptional regulator RD09_RS01735 PF09339 IclR helix-turn-helix domain RD09_RS01740 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS01745 PF02627 Carboxymuconolactone decarboxylase family RD09_RS01750 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS01760 PF00491 Arginase family RD09_RS01765 PF00202 Aminotransferase class-III RD09_RS01775 PF00392 Bacterial regulatory proteins, gntR family RD09_RS01775 PF07729 FCD domain RD09_RS01780 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS01785 PF01266 FAD dependent oxidoreductase RD09_RS01790 PF01361 Tautomerase enzyme RD09_RS01795 PF04055 Radical SAM superfamily RD09_RS01795 PF18693 TRAM domain RD09_RS01795 PF00919 Uncharacterized protein family UPF0004 RD09_RS01805 PF03641 Possible lysine decarboxylase RD09_RS01815 PF13419 Haloacid dehalogenase-like hydrolase RD09_RS01825 PF00551 Formyl transferase RD09_RS01825 PF02911 Formyl transferase, C-terminal domain RD09_RS01835 PF01327 Polypeptide deformylase RD09_RS01840 PF00266 Aminotransferase class-V RD09_RS01845 PF01037 Lrp/AsnC ligand binding domain RD09_RS01850 PF02481 DNA recombination-mediator protein A RD09_RS01850 PF17782 DprA winged helix domain RD09_RS01855 PF00682 HMGL-like RD09_RS01865 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS01870 PF00155 Aminotransferase class I and II RD09_RS01875 PF01168 Alanine racemase, N-terminal domain RD09_RS01880 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS01890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS01890 PF03466 LysR substrate binding domain RD09_RS01895 PF01810 LysE type translocator RD09_RS01915 PF01958 Domain of unknown function DUF108 RD09_RS01915 PF03447 Homoserine dehydrogenase, NAD binding domain RD09_RS01925 PF01029 NusB family RD09_RS01925 PF01189 16S rRNA methyltransferase RsmB/F RD09_RS01935 PF00672 HAMP domain RD09_RS01935 PF00989 PAS fold RD09_RS01935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS01935 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS01940 PF00158 Sigma-54 interaction domain RD09_RS01940 PF02954 Bacterial regulatory protein, Fis family RD09_RS01940 PF00072 Response regulator receiver domain RD09_RS01945 PF02254 TrkA-N domain RD09_RS01945 PF02080 TrkA-C domain RD09_RS01950 PF02386 Cation transport protein RD09_RS01955 PF01047 MarR family RD09_RS01965 PF12804 MobA-like NTP transferase domain RD09_RS01975 PF17645 Arylmalonate decarboxylase RD09_RS01980 PF00561 alpha/beta hydrolase fold RD09_RS01990 PF00857 Isochorismatase family RD09_RS02000 PF00355 Rieske [2Fe-2S] domain RD09_RS02000 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD09_RS02005 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS02005 PF14759 Reductase C-terminal RD09_RS02010 PF00355 Rieske [2Fe-2S] domain RD09_RS02015 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS02020 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD09_RS02020 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD09_RS02025 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD09_RS02025 PF00941 FAD binding domain in molybdopterin dehydrogenase RD09_RS02030 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS02030 PF01799 [2Fe-2S] binding domain RD09_RS02040 PF00005 ABC transporter RD09_RS02045 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS02055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD09_RS02060 PF04107 Glutamate-cysteine ligase family 2(GCS2) RD09_RS02065 PF08241 Methyltransferase domain RD09_RS02075 PF00588 SpoU rRNA Methylase family RD09_RS02080 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS02085 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RD09_RS02085 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RD09_RS02090 PF02556 Preprotein translocase subunit SecB RD09_RS02095 PF00462 Glutaredoxin RD09_RS02100 PF12368 Rhodanase C-terminal RD09_RS02100 PF17773 UPF0176 acylphosphatase like domain RD09_RS02100 PF00581 Rhodanese-like domain RD09_RS02105 PF00300 Histidine phosphatase superfamily (branch 1) RD09_RS02110 PF01551 Peptidase family M23 RD09_RS02115 PF03572 Peptidase family S41 RD09_RS02115 PF13180 PDZ domain RD09_RS02120 PF00899 ThiF family RD09_RS02130 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS02145 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS02160 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS02160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD09_RS02165 PF00005 ABC transporter RD09_RS02170 PF00005 ABC transporter RD09_RS02170 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD09_RS02175 PF02653 Branched-chain amino acid transport system / permease component RD09_RS02180 PF13458 Periplasmic binding protein RD09_RS02190 PF13193 AMP-binding enzyme C-terminal domain RD09_RS02190 PF00501 AMP-binding enzyme RD09_RS02195 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS02195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS02195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS02200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD09_RS02200 PF00364 Biotin-requiring enzyme RD09_RS02200 PF02817 e3 binding domain RD09_RS02205 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS02210 PF02779 Transketolase, pyrimidine binding domain RD09_RS02210 PF02780 Transketolase, C-terminal domain RD09_RS02215 PF00676 Dehydrogenase E1 component RD09_RS02225 PF13607 Succinyl-CoA ligase like flavodoxin domain RD09_RS02225 PF13380 CoA binding domain RD09_RS02230 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS02235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS02235 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS02235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS02240 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS02245 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD09_RS02245 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD09_RS02260 PF01575 MaoC like domain RD09_RS02265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS02265 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS02265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS02270 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS02275 PF02515 CoA-transferase family III RD09_RS02280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS02280 PF03466 LysR substrate binding domain RD09_RS02285 PF00701 Dihydrodipicolinate synthetase family RD09_RS02305 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS02310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS02310 PF03466 LysR substrate binding domain RD09_RS02315 PF09330 D-lactate dehydrogenase, membrane binding RD09_RS02315 PF01565 FAD binding domain RD09_RS02320 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS02320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS02320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS02325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS02325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS02325 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS02330 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS02335 PF01546 Peptidase family M20/M25/M40 RD09_RS02335 PF07687 Peptidase dimerisation domain RD09_RS02345 PF01042 Endoribonuclease L-PSP RD09_RS02355 PF00107 Zinc-binding dehydrogenase RD09_RS02355 PF08240 Alcohol dehydrogenase GroES-like domain RD09_RS02360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS02360 PF03466 LysR substrate binding domain RD09_RS02365 PF13607 Succinyl-CoA ligase like flavodoxin domain RD09_RS02365 PF13380 CoA binding domain RD09_RS02370 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS02380 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS02385 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RD09_RS02390 PF01380 SIS domain RD09_RS02395 PF01037 Lrp/AsnC ligand binding domain RD09_RS02400 PF00108 Thiolase, N-terminal domain RD09_RS02400 PF02803 Thiolase, C-terminal domain RD09_RS02405 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS02405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD09_RS02405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD09_RS02410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS02410 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS02410 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD09_RS02410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS02415 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS02420 PF00583 Acetyltransferase (GNAT) family RD09_RS02420 PF13607 Succinyl-CoA ligase like flavodoxin domain RD09_RS02420 PF13380 CoA binding domain RD09_RS02435 PF01568 Molydopterin dinucleotide binding domain RD09_RS02435 PF00384 Molybdopterin oxidoreductase RD09_RS02455 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RD09_RS02455 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RD09_RS02455 PF01488 Shikimate / quinate 5-dehydrogenase RD09_RS02460 PF00472 RF-1 domain RD09_RS02460 PF03462 PCRF domain RD09_RS02465 PF05175 Methyltransferase small domain RD09_RS02465 PF17827 PrmC N-terminal domain RD09_RS02470 PF00462 Glutaredoxin RD09_RS02475 PF02441 Flavoprotein RD09_RS02480 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS02485 PF09084 NMT1/THI5 like RD09_RS02490 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD09_RS02490 PF00941 FAD binding domain in molybdopterin dehydrogenase RD09_RS02495 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS02495 PF01799 [2Fe-2S] binding domain RD09_RS02500 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD09_RS02500 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD09_RS02520 PF03330 Lytic transglycolase RD09_RS02520 PF05036 Sporulation related domain RD09_RS02525 PF03668 P-loop ATPase protein family RD09_RS02535 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD09_RS02535 PF00034 Cytochrome c RD09_RS02535 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD09_RS02540 PF02603 HPr Serine kinase N terminus RD09_RS02540 PF07475 HPr Serine kinase C-terminal domain RD09_RS02545 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RD09_RS02550 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RD09_RS02555 PF00005 ABC transporter RD09_RS02575 PF01380 SIS domain RD09_RS02575 PF00571 CBS domain RD09_RS02580 PF01370 NAD dependent epimerase/dehydratase family RD09_RS02580 PF02222 ATP-grasp domain RD09_RS02585 PF00593 TonB dependent receptor RD09_RS02585 PF07715 TonB-dependent Receptor Plug Domain RD09_RS02595 PF00732 GMC oxidoreductase RD09_RS02595 PF05199 GMC oxidoreductase RD09_RS02615 PF00152 tRNA synthetases class II (D, K and N) RD09_RS02615 PF02938 GAD domain RD09_RS02615 PF01336 OB-fold nucleic acid binding domain RD09_RS02620 PF03372 Endonuclease/Exonuclease/phosphatase family RD09_RS02625 PF13091 PLD-like domain RD09_RS02650 PF13458 Periplasmic binding protein RD09_RS02655 PF01425 Amidase RD09_RS02660 PF05995 Cysteine dioxygenase type I RD09_RS02665 PF01614 Bacterial transcriptional regulator RD09_RS02665 PF09339 IclR helix-turn-helix domain RD09_RS02680 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD09_RS02680 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD09_RS02680 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS02685 PF05275 Copper resistance protein B precursor (CopB) RD09_RS02690 PF07731 Multicopper oxidase RD09_RS02690 PF07732 Multicopper oxidase RD09_RS02690 PF00394 Multicopper oxidase RD09_RS02720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD09_RS02720 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RD09_RS02720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD09_RS02725 PF02515 CoA-transferase family III RD09_RS02730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS02730 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS02730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS02745 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS02750 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS02755 PF01256 Carbohydrate kinase RD09_RS02775 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS02780 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS02780 PF12911 N-terminal TM domain of oligopeptide transport permease C RD09_RS02785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS02785 PF00005 ABC transporter RD09_RS02795 PF07687 Peptidase dimerisation domain RD09_RS02795 PF01546 Peptidase family M20/M25/M40 RD09_RS02805 PF13361 UvrD-like helicase C-terminal domain RD09_RS02805 PF00580 UvrD/REP helicase N-terminal domain RD09_RS02810 PF18074 Primosomal protein N C-terminal domain RD09_RS02810 PF00271 Helicase conserved C-terminal domain RD09_RS02810 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RD09_RS02810 PF17764 3′ DNA-binding domain (3′BD) RD09_RS02810 PF00270 DEAD/DEAH box helicase RD09_RS02815 PF01208 Uroporphyrinogen decarboxylase (URO-D) RD09_RS02825 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RD09_RS02830 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD09_RS02830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD09_RS02835 PF00231 ATP synthase RD09_RS02840 PF00306 ATP synthase alpha/beta chain, C terminal domain RD09_RS02840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD09_RS02840 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD09_RS02845 PF00213 ATP synthase delta (OSCP) subunit RD09_RS02850 PF00430 ATP synthase B/B' CF(0) RD09_RS02855 PF00137 ATP synthase subunit C RD09_RS02860 PF00119 ATP synthase A chain RD09_RS02885 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS02890 PF17820 PDZ domain RD09_RS02890 PF13180 PDZ domain RD09_RS02895 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS02895 PF13192 Thioredoxin domain RD09_RS02905 PF01171 PP-loop family RD09_RS02915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD09_RS02915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD09_RS02915 PF01842 ACT domain RD09_RS02920 PF13098 Thioredoxin-like domain RD09_RS02920 PF10411 Disulfide bond isomerase protein N-terminus RD09_RS02925 PF01494 FAD binding domain RD09_RS02930 PF03562 MltA specific insert domain RD09_RS02930 PF06725 3D domain RD09_RS02935 PF04379 ApaG domain RD09_RS02940 PF00834 Ribulose-phosphate 3 epimerase family RD09_RS02945 PF13419 Haloacid dehalogenase-like hydrolase RD09_RS02950 PF04715 Anthranilate synthase component I, N terminal region RD09_RS02950 PF00425 chorismate binding enzyme RD09_RS02955 PF00117 Glutamine amidotransferase class-I RD09_RS02960 PF00591 Glycosyl transferase family, a/b domain RD09_RS02960 PF02885 Glycosyl transferase family, helical bundle domain RD09_RS02965 PF00218 Indole-3-glycerol phosphate synthase RD09_RS02990 PF18158 Adaptive response protein AidB N-terminal domain RD09_RS02990 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS02990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS02995 PF03466 LysR substrate binding domain RD09_RS02995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS03000 PF00551 Formyl transferase RD09_RS03010 PF01613 Flavin reductase like domain RD09_RS03015 PF01243 Pyridoxamine 5'-phosphate oxidase RD09_RS03015 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RD09_RS03025 PF07690 Major Facilitator Superfamily RD09_RS03030 PF00899 ThiF family RD09_RS03035 PF00392 Bacterial regulatory proteins, gntR family RD09_RS03035 PF07702 UTRA domain RD09_RS03040 PF00501 AMP-binding enzyme RD09_RS03040 PF13193 AMP-binding enzyme C-terminal domain RD09_RS03045 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS03060 PF01063 Amino-transferase class IV RD09_RS03065 PF00425 chorismate binding enzyme RD09_RS03065 PF04715 Anthranilate synthase component I, N terminal region RD09_RS03070 PF17760 UvrA interaction domain RD09_RS03070 PF17755 UvrA DNA-binding domain RD09_RS03070 PF00005 ABC transporter RD09_RS03080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS03080 PF03466 LysR substrate binding domain RD09_RS03085 PF00535 Glycosyl transferase family 2 RD09_RS03090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS03095 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS03105 PF12848 ABC transporter RD09_RS03105 PF00005 ABC transporter RD09_RS03125 PF03776 Septum formation topological specificity factor MinE RD09_RS03130 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RD09_RS03135 PF03775 Septum formation inhibitor MinC, C-terminal domain RD09_RS03135 PF05209 Septum formation inhibitor MinC, N-terminal domain RD09_RS03140 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RD09_RS03140 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD09_RS03145 PF01654 Cytochrome bd terminal oxidase subunit I RD09_RS03155 PF02702 Osmosensitive K+ channel His kinase sensor domain RD09_RS03155 PF13493 Domain of unknown function (DUF4118) RD09_RS03155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS03160 PF00486 Transcriptional regulatory protein, C terminal RD09_RS03160 PF00072 Response regulator receiver domain RD09_RS03175 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS03180 PF04391 Protein of unknown function (DUF533) RD09_RS03200 PF01464 Transglycosylase SLT domain RD09_RS03200 PF01476 LysM domain RD09_RS03205 PF16123 Hydroxyacylglutathione hydrolase C-terminus RD09_RS03205 PF00753 Metallo-beta-lactamase superfamily RD09_RS03210 PF08241 Methyltransferase domain RD09_RS03215 PF00075 RNase H RD09_RS03260 PF01575 MaoC like domain RD09_RS03265 PF02803 Thiolase, C-terminal domain RD09_RS03265 PF00108 Thiolase, N-terminal domain RD09_RS03275 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS03280 PF00106 short chain dehydrogenase RD09_RS03290 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD09_RS03290 PF00005 ABC transporter RD09_RS03295 PF00005 ABC transporter RD09_RS03300 PF02653 Branched-chain amino acid transport system / permease component RD09_RS03310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS03310 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS03310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS03315 PF00440 Bacterial regulatory proteins, tetR family RD09_RS03315 PF08361 MAATS-type transcriptional repressor, C-terminal region RD09_RS03320 PF14535 AMP-binding enzyme C-terminal domain RD09_RS03320 PF00501 AMP-binding enzyme RD09_RS03325 PF02515 CoA-transferase family III RD09_RS03345 PF04285 Protein of unknown function (DUF444) RD09_RS03350 PF04293 SpoVR like protein RD09_RS03365 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS03370 PF07476 Methylaspartate ammonia-lyase C-terminus RD09_RS03370 PF05034 Methylaspartate ammonia-lyase N-terminus RD09_RS03375 PF00392 Bacterial regulatory proteins, gntR family RD09_RS03375 PF07702 UTRA domain RD09_RS03390 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS03395 PF00376 MerR family regulatory protein RD09_RS03395 PF09278 MerR, DNA binding RD09_RS03400 PF01774 UreD urease accessory protein RD09_RS03405 PF00547 Urease, gamma subunit RD09_RS03410 PF04955 HupE / UreJ protein RD09_RS03415 PF00699 Urease beta subunit RD09_RS03420 PF01979 Amidohydrolase family RD09_RS03420 PF00449 Urease alpha-subunit, N-terminal domain RD09_RS03425 PF02814 UreE urease accessory protein, N-terminal domain RD09_RS03425 PF05194 UreE urease accessory protein, C-terminal domain RD09_RS03430 PF01730 UreF RD09_RS03435 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD09_RS03445 PF07171 MlrC C-terminus RD09_RS03445 PF07364 Metallopeptidase family M81 RD09_RS03455 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS03460 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS03465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS03470 PF00171 Aldehyde dehydrogenase family RD09_RS03475 PF00202 Aminotransferase class-III RD09_RS03480 PF00155 Aminotransferase class I and II RD09_RS03480 PF00392 Bacterial regulatory proteins, gntR family RD09_RS03485 PF00186 Dihydrofolate reductase RD09_RS03490 PF00303 Thymidylate synthase RD09_RS03500 PF03232 Ubiquinone biosynthesis protein COQ7 RD09_RS03505 PF00953 Glycosyl transferase family 4 RD09_RS03510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD09_RS03510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD09_RS03510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD09_RS03515 PF01370 NAD dependent epimerase/dehydratase family RD09_RS03520 PF03023 Lipid II flippase MurJ RD09_RS03525 PF13439 Glycosyltransferase Family 4 RD09_RS03525 PF00534 Glycosyl transferases group 1 RD09_RS03530 PF13537 Glutamine amidotransferase domain RD09_RS03530 PF00733 Asparagine synthase RD09_RS03535 PF00534 Glycosyl transferases group 1 RD09_RS03535 PF13439 Glycosyltransferase Family 4 RD09_RS03540 PF00534 Glycosyl transferases group 1 RD09_RS03540 PF13439 Glycosyltransferase Family 4 RD09_RS03545 PF13477 Glycosyl transferase 4-like RD09_RS03545 PF00534 Glycosyl transferases group 1 RD09_RS03550 PF00342 Phosphoglucose isomerase RD09_RS03555 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD09_RS03555 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD09_RS03555 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD09_RS03555 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD09_RS03565 PF01565 FAD binding domain RD09_RS03565 PF02913 FAD linked oxidases, C-terminal domain RD09_RS03570 PF00486 Transcriptional regulatory protein, C terminal RD09_RS03570 PF00072 Response regulator receiver domain RD09_RS03575 PF08521 Two-component sensor kinase N-terminal RD09_RS03575 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS03575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS03580 PF00884 Sulfatase RD09_RS03590 PF04209 homogentisate 1,2-dioxygenase RD09_RS03595 PF03466 LysR substrate binding domain RD09_RS03595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS03605 PF01494 FAD binding domain RD09_RS03615 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RD09_RS03615 PF06827 Zinc finger found in FPG and IleRS RD09_RS03615 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RD09_RS03625 PF03550 Outer membrane lipoprotein LolB RD09_RS03630 PF08544 GHMP kinases C terminal RD09_RS03630 PF00288 GHMP kinases N terminal domain RD09_RS03640 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RD09_RS03640 PF14572 Phosphoribosyl synthetase-associated domain RD09_RS03645 PF14693 Ribosomal protein TL5, C-terminal domain RD09_RS03645 PF01386 Ribosomal L25p family RD09_RS03650 PF01195 Peptidyl-tRNA hydrolase RD09_RS03660 PF01926 50S ribosome-binding GTPase RD09_RS03660 PF06071 Protein of unknown function (DUF933) RD09_RS03665 PF13356 Arm DNA-binding domain RD09_RS03665 PF00589 Phage integrase family RD09_RS03680 PF01555 DNA methylase RD09_RS03685 PF13175 AAA ATPase domain RD09_RS03710 PF13361 UvrD-like helicase C-terminal domain RD09_RS03710 PF00580 UvrD/REP helicase N-terminal domain RD09_RS03725 PF12951 Passenger-associated-transport-repeat RD09_RS03735 PF00072 Response regulator receiver domain RD09_RS03735 PF00486 Transcriptional regulatory protein, C terminal RD09_RS03750 PF00440 Bacterial regulatory proteins, tetR family RD09_RS03750 PF17938 Tetracyclin repressor-like, C-terminal domain RD09_RS03775 PF01266 FAD dependent oxidoreductase RD09_RS03790 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS03800 PF01810 LysE type translocator RD09_RS03845 PF00561 alpha/beta hydrolase fold RD09_RS03855 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS03860 PF00005 ABC transporter RD09_RS03860 PF03459 TOBE domain RD09_RS03865 PF13091 PLD-like domain RD09_RS03875 PF03167 Uracil DNA glycosylase superfamily RD09_RS03880 PF00271 Helicase conserved C-terminal domain RD09_RS03880 PF00270 DEAD/DEAH box helicase RD09_RS03890 PF01743 Poly A polymerase head domain RD09_RS03890 PF12627 Probable RNA and SrmB- binding site of polymerase A RD09_RS03895 PF01464 Transglycosylase SLT domain RD09_RS03895 PF14718 Soluble lytic murein transglycosylase L domain RD09_RS03905 PF07690 Major Facilitator Superfamily RD09_RS03905 PF00083 Sugar (and other) transporter RD09_RS03910 PF00850 Histone deacetylase domain RD09_RS03915 PF03466 LysR substrate binding domain RD09_RS03915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS03925 PF02219 Methylenetetrahydrofolate reductase RD09_RS03930 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RD09_RS03935 PF05221 S-adenosyl-L-homocysteine hydrolase RD09_RS03935 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RD09_RS03940 PF13439 Glycosyltransferase Family 4 RD09_RS03940 PF00534 Glycosyl transferases group 1 RD09_RS03950 PF00438 S-adenosylmethionine synthetase, N-terminal domain RD09_RS03950 PF02772 S-adenosylmethionine synthetase, central domain RD09_RS03950 PF02773 S-adenosylmethionine synthetase, C-terminal domain RD09_RS03960 PF03279 Bacterial lipid A biosynthesis acyltransferase RD09_RS03965 PF01678 Diaminopimelate epimerase RD09_RS03975 PF02899 Phage integrase, N-terminal SAM-like domain RD09_RS03975 PF00589 Phage integrase family RD09_RS03980 PF07715 TonB-dependent Receptor Plug Domain RD09_RS03980 PF00593 TonB dependent receptor RD09_RS03985 PF03824 High-affinity nickel-transport protein RD09_RS03995 PF01297 Zinc-uptake complex component A periplasmic RD09_RS04000 PF00950 ABC 3 transport family RD09_RS04005 PF00005 ABC transporter RD09_RS04015 PF01475 Ferric uptake regulator family RD09_RS04020 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD09_RS04020 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD09_RS04025 PF01258 Prokaryotic dksA/traR C4-type zinc finger RD09_RS04030 PF00227 Proteasome subunit RD09_RS04035 PF00004 ATPase family associated with various cellular activities (AAA) RD09_RS04035 PF07724 AAA domain (Cdc48 subfamily) RD09_RS04035 PF10431 C-terminal, D2-small domain, of ClpB protein RD09_RS04045 PF01923 Cobalamin adenosyltransferase RD09_RS04060 PF02525 Flavodoxin-like fold RD09_RS04065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD09_RS04065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD09_RS04075 PF01970 Tripartite tricarboxylate transporter TctA family RD09_RS04120 PF01790 Prolipoprotein diacylglyceryl transferase RD09_RS04125 PF00920 Dehydratase family RD09_RS04130 PF00034 Cytochrome c RD09_RS04135 PF01625 Peptide methionine sulfoxide reductase RD09_RS04140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD09_RS04145 PF01037 Lrp/AsnC ligand binding domain RD09_RS04185 PF01546 Peptidase family M20/M25/M40 RD09_RS04185 PF07687 Peptidase dimerisation domain RD09_RS04190 PF01979 Amidohydrolase family RD09_RS04195 PF16326 ABC transporter C-terminal domain RD09_RS04195 PF00005 ABC transporter RD09_RS04195 PF12848 ABC transporter RD09_RS04205 PF02381 MraZ protein, putative antitoxin-like RD09_RS04210 PF01795 MraW methylase family RD09_RS04215 PF04999 Cell division protein FtsL RD09_RS04220 PF00905 Penicillin binding protein transpeptidase domain RD09_RS04220 PF03717 Penicillin-binding Protein dimerisation domain RD09_RS04225 PF08245 Mur ligase middle domain RD09_RS04225 PF02875 Mur ligase family, glutamate ligase domain RD09_RS04230 PF00953 Glycosyl transferase family 4 RD09_RS04235 PF08245 Mur ligase middle domain RD09_RS04235 PF02875 Mur ligase family, glutamate ligase domain RD09_RS04240 PF01098 Cell cycle protein RD09_RS04245 PF04101 Glycosyltransferase family 28 C-terminal domain RD09_RS04245 PF03033 Glycosyltransferase family 28 N-terminal domain RD09_RS04250 PF02875 Mur ligase family, glutamate ligase domain RD09_RS04250 PF08245 Mur ligase middle domain RD09_RS04250 PF01225 Mur ligase family, catalytic domain RD09_RS04255 PF07478 D-ala D-ala ligase C-terminus RD09_RS04255 PF01820 D-ala D-ala ligase N-terminus RD09_RS04260 PF03799 Cell division protein FtsQ RD09_RS04260 PF08478 POTRA domain, FtsQ-type RD09_RS04265 PF02491 SHS2 domain inserted in FTSA RD09_RS04270 PF00091 Tubulin/FtsZ family, GTPase domain RD09_RS04270 PF12327 FtsZ family, C-terminal domain RD09_RS04275 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RD09_RS04285 PF08525 Opacity-associated protein A N-terminal motif RD09_RS04285 PF01476 LysM domain RD09_RS04285 PF01551 Peptidase family M23 RD09_RS04290 PF07517 SecA DEAD-like domain RD09_RS04290 PF02810 SEC-C motif RD09_RS04290 PF07516 SecA Wing and Scaffold domain RD09_RS04290 PF01043 SecA preprotein cross-linking domain RD09_RS04300 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS04310 PF00106 short chain dehydrogenase RD09_RS04315 PF01266 FAD dependent oxidoreductase RD09_RS04320 PF01037 Lrp/AsnC ligand binding domain RD09_RS04330 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RD09_RS04340 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RD09_RS04340 PF08501 Shikimate dehydrogenase substrate binding domain RD09_RS04340 PF01488 Shikimate / quinate 5-dehydrogenase RD09_RS04350 PF00773 RNB domain RD09_RS04355 PF05728 Uncharacterised protein family (UPF0227) RD09_RS04360 PF01225 Mur ligase family, catalytic domain RD09_RS04360 PF08245 Mur ligase middle domain RD09_RS04360 PF02875 Mur ligase family, glutamate ligase domain RD09_RS04365 PF08534 Redoxin RD09_RS04370 PF01220 Dehydroquinase class II RD09_RS04375 PF00364 Biotin-requiring enzyme RD09_RS04380 PF02785 Biotin carboxylase C-terminal domain RD09_RS04380 PF00289 Biotin carboxylase, N-terminal domain RD09_RS04380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD09_RS04395 PF00294 pfkB family carbohydrate kinase RD09_RS04420 PF03062 MBOAT, membrane-bound O-acyltransferase family RD09_RS04425 PF13193 AMP-binding enzyme C-terminal domain RD09_RS04425 PF00501 AMP-binding enzyme RD09_RS04440 PF00268 Ribonucleotide reductase, small chain RD09_RS04445 PF00317 Ribonucleotide reductase, all-alpha domain RD09_RS04445 PF02867 Ribonucleotide reductase, barrel domain RD09_RS04445 PF03477 ATP cone domain RD09_RS04460 PF01037 Lrp/AsnC ligand binding domain RD09_RS04475 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD09_RS04480 PF00583 Acetyltransferase (GNAT) family RD09_RS04480 PF13607 Succinyl-CoA ligase like flavodoxin domain RD09_RS04480 PF13380 CoA binding domain RD09_RS04490 PF00392 Bacterial regulatory proteins, gntR family RD09_RS04490 PF07729 FCD domain RD09_RS04500 PF00271 Helicase conserved C-terminal domain RD09_RS04500 PF03880 DbpA RNA binding domain RD09_RS04500 PF00270 DEAD/DEAH box helicase RD09_RS04505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD09_RS04510 PF00857 Isochorismatase family RD09_RS04515 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS04520 PF00005 ABC transporter RD09_RS04530 PF02230 Phospholipase/Carboxylesterase RD09_RS04535 PF04751 Protein of unknown function (DUF615) RD09_RS04540 PF01523 Putative modulator of DNA gyrase RD09_RS04545 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS04550 PF00572 Ribosomal protein L13 RD09_RS04555 PF00380 Ribosomal protein S9/S16 RD09_RS04560 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD09_RS04560 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD09_RS04570 PF01521 Iron-sulphur cluster biosynthesis RD09_RS04575 PF03702 Anhydro-N-acetylmuramic acid kinase RD09_RS04580 PF01551 Peptidase family M23 RD09_RS04580 PF08460 Bacterial SH3 domain RD09_RS04590 PF01479 S4 domain RD09_RS04590 PF00579 tRNA synthetases class I (W and Y) RD09_RS04600 PF00464 Serine hydroxymethyltransferase RD09_RS04605 PF03477 ATP cone domain RD09_RS04620 PF01872 RibD C-terminal domain RD09_RS04620 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD09_RS04635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS04635 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS04635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS04635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS04635 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS04635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS04645 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS04650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS04650 PF03466 LysR substrate binding domain RD09_RS04655 PF02515 CoA-transferase family III RD09_RS04675 PF02678 Pirin RD09_RS04675 PF05726 Pirin C-terminal cupin domain RD09_RS04690 PF00072 Response regulator receiver domain RD09_RS04695 PF06481 COX Aromatic Rich Motif RD09_RS04695 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD09_RS04700 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD09_RS04705 PF00510 Cytochrome c oxidase subunit III RD09_RS04710 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD09_RS04715 PF01022 Bacterial regulatory protein, arsR family RD09_RS04735 PF05114 Protein of unknown function (DUF692) RD09_RS04750 PF00593 TonB dependent receptor RD09_RS04750 PF07715 TonB-dependent Receptor Plug Domain RD09_RS04765 PF01551 Peptidase family M23 RD09_RS04765 PF01476 LysM domain RD09_RS04780 PF04461 Protein of unknown function (DUF520) RD09_RS04790 PF08281 Sigma-70, region 4 RD09_RS04790 PF04542 Sigma-70 region 2 RD09_RS04810 PF00795 Carbon-nitrogen hydrolase RD09_RS04815 PF01523 Putative modulator of DNA gyrase RD09_RS04820 PF00793 DAHP synthetase I family RD09_RS04825 PF05860 haemagglutination activity domain RD09_RS04825 PF13018 Extended Signal Peptide of Type V secretion system RD09_RS04825 PF05594 Haemagluttinin repeat RD09_RS04825 PF05594 Haemagluttinin repeat RD09_RS04825 PF13332 Hemagglutinin repeat RD09_RS04825 PF13018 Extended Signal Peptide of Type V secretion system RD09_RS04825 PF13332 Hemagglutinin repeat RD09_RS04825 PF05860 haemagglutination activity domain RD09_RS04830 PF01565 FAD binding domain RD09_RS04830 PF02913 FAD linked oxidases, C-terminal domain RD09_RS04835 PF01565 FAD binding domain RD09_RS04835 PF02913 FAD linked oxidases, C-terminal domain RD09_RS04840 PF01565 FAD binding domain RD09_RS04845 PF13183 4Fe-4S dicluster domain RD09_RS04845 PF02754 Cysteine-rich domain RD09_RS04850 PF00756 Putative esterase RD09_RS04855 PF00593 TonB dependent receptor RD09_RS04855 PF07715 TonB-dependent Receptor Plug Domain RD09_RS04865 PF02233 NAD(P) transhydrogenase beta subunit RD09_RS04870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RD09_RS04870 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RD09_RS04880 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS04885 PF03466 LysR substrate binding domain RD09_RS04895 PF01925 Sulfite exporter TauE/SafE RD09_RS04900 PF00043 Glutathione S-transferase, C-terminal domain RD09_RS04900 PF13417 Glutathione S-transferase, N-terminal domain RD09_RS04905 PF00206 Lyase RD09_RS04905 PF08328 Adenylosuccinate lyase C-terminal RD09_RS04910 PF01322 Cytochrome C' RD09_RS04930 PF01594 AI-2E family transporter RD09_RS04940 PF07729 FCD domain RD09_RS04940 PF00392 Bacterial regulatory proteins, gntR family RD09_RS04950 PF01425 Amidase RD09_RS04955 PF02515 CoA-transferase family III RD09_RS04960 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS04975 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS04995 PF09339 IclR helix-turn-helix domain RD09_RS04995 PF01614 Bacterial transcriptional regulator RD09_RS05005 PF00501 AMP-binding enzyme RD09_RS05005 PF13193 AMP-binding enzyme C-terminal domain RD09_RS05010 PF01042 Endoribonuclease L-PSP RD09_RS05015 PF02653 Branched-chain amino acid transport system / permease component RD09_RS05030 PF00005 ABC transporter RD09_RS05035 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD09_RS05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS05050 PF03466 LysR substrate binding domain RD09_RS05060 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD09_RS05065 PF07690 Major Facilitator Superfamily RD09_RS05070 PF03466 LysR substrate binding domain RD09_RS05070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS05085 PF01425 Amidase RD09_RS05090 PF00677 Lumazine binding domain RD09_RS05095 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS05100 PF13404 AsnC-type helix-turn-helix domain RD09_RS05100 PF01037 Lrp/AsnC ligand binding domain RD09_RS05110 PF00501 AMP-binding enzyme RD09_RS05110 PF13193 AMP-binding enzyme C-terminal domain RD09_RS05120 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS05125 PF00005 ABC transporter RD09_RS05140 PF08240 Alcohol dehydrogenase GroES-like domain RD09_RS05140 PF00107 Zinc-binding dehydrogenase RD09_RS05165 PF01966 HD domain RD09_RS05170 PF00155 Aminotransferase class I and II RD09_RS05175 PF03466 LysR substrate binding domain RD09_RS05175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS05185 PF00083 Sugar (and other) transporter RD09_RS05205 PF13609 Gram-negative porin RD09_RS05210 PF02548 Ketopantoate hydroxymethyltransferase RD09_RS05215 PF03466 LysR substrate binding domain RD09_RS05215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS05260 PF00440 Bacterial regulatory proteins, tetR family RD09_RS05270 PF05170 AsmA family RD09_RS05275 PF03352 Methyladenine glycosylase RD09_RS05280 PF00376 MerR family regulatory protein RD09_RS05280 PF09278 MerR, DNA binding RD09_RS05295 PF01547 Bacterial extracellular solute-binding protein RD09_RS05305 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS05305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD09_RS05310 PF00005 ABC transporter RD09_RS05310 PF08402 TOBE domain RD09_RS05315 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS05320 PF14785 Maltose transport system permease protein MalF P2 domain RD09_RS05320 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS05340 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS05345 PF00392 Bacterial regulatory proteins, gntR family RD09_RS05345 PF07729 FCD domain RD09_RS05370 PF00465 Iron-containing alcohol dehydrogenase RD09_RS05385 PF03180 NLPA lipoprotein RD09_RS05390 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS05395 PF00005 ABC transporter RD09_RS05395 PF09383 NIL domain RD09_RS05400 PF01055 Glycosyl hydrolases family 31 RD09_RS05400 PF13802 Galactose mutarotase-like RD09_RS05410 PF00459 Inositol monophosphatase family RD09_RS05420 PF13193 AMP-binding enzyme C-terminal domain RD09_RS05420 PF00501 AMP-binding enzyme RD09_RS05425 PF07687 Peptidase dimerisation domain RD09_RS05425 PF01546 Peptidase family M20/M25/M40 RD09_RS05430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS05430 PF03466 LysR substrate binding domain RD09_RS05435 PF03601 Conserved hypothetical protein 698 RD09_RS05440 PF03061 Thioesterase superfamily RD09_RS05445 PF01769 Divalent cation transporter RD09_RS05445 PF00571 CBS domain RD09_RS05445 PF03448 MgtE intracellular N domain RD09_RS05465 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS05475 PF02609 Exonuclease VII small subunit RD09_RS05480 PF00348 Polyprenyl synthetase RD09_RS05485 PF02779 Transketolase, pyrimidine binding domain RD09_RS05485 PF02780 Transketolase, C-terminal domain RD09_RS05485 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RD09_RS05490 PF02649 Type I GTP cyclohydrolase folE2 RD09_RS05495 PF01250 Ribosomal protein S6 RD09_RS05505 PF01084 Ribosomal protein S18 RD09_RS05510 PF03948 Ribosomal protein L9, C-terminal domain RD09_RS05510 PF01281 Ribosomal protein L9, N-terminal domain RD09_RS05520 PF03796 DnaB-like helicase C terminal domain RD09_RS05520 PF00772 DnaB-like helicase N terminal domain RD09_RS05525 PF13593 SBF-like CPA transporter family (DUF4137) RD09_RS05530 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD09_RS05535 PF02562 PhoH-like protein RD09_RS05535 PF13638 PIN domain RD09_RS05540 PF00578 AhpC/TSA family RD09_RS05545 PF04430 Protein of unknown function (DUF498/DUF598) RD09_RS05550 PF00155 Aminotransferase class I and II RD09_RS05555 PF03447 Homoserine dehydrogenase, NAD binding domain RD09_RS05555 PF00742 Homoserine dehydrogenase RD09_RS05555 PF01842 ACT domain RD09_RS05560 PF00291 Pyridoxal-phosphate dependent enzyme RD09_RS05560 PF14821 Threonine synthase N terminus RD09_RS05575 PF02615 Malate/L-lactate dehydrogenase RD09_RS05585 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS05600 PF03328 HpcH/HpaI aldolase/citrate lyase family RD09_RS05605 PF01649 Ribosomal protein S20 RD09_RS05615 PF03023 Lipid II flippase MurJ RD09_RS05620 PF00106 short chain dehydrogenase RD09_RS05625 PF05191 Adenylate kinase, active site lid RD09_RS05630 PF02348 Cytidylyltransferase RD09_RS05635 PF03966 Trm112p-like protein RD09_RS05640 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RD09_RS05645 PF02472 Biopolymer transport protein ExbD/TolR RD09_RS05650 PF01618 MotA/TolQ/ExbB proton channel family RD09_RS05660 PF02601 Exonuclease VII, large subunit RD09_RS05660 PF13742 OB-fold nucleic acid binding domain RD09_RS05665 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD09_RS05665 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD09_RS05670 PF00654 Voltage gated chloride channel RD09_RS05675 PF00108 Thiolase, N-terminal domain RD09_RS05675 PF02803 Thiolase, C-terminal domain RD09_RS05685 PF00313 'Cold-shock' DNA-binding domain RD09_RS05690 PF02617 ATP-dependent Clp protease adaptor protein ClpS RD09_RS05695 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RD09_RS05695 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RD09_RS05695 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RD09_RS05695 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RD09_RS05695 PF01835 MG2 domain RD09_RS05695 PF07703 Alpha-2-macroglobulin bait region domain RD09_RS05695 PF00207 Alpha-2-macroglobulin family RD09_RS05695 PF17962 Bacterial macroglobulin domain 6 RD09_RS05700 PF00905 Penicillin binding protein transpeptidase domain RD09_RS05700 PF00912 Transglycosylase RD09_RS05700 PF06832 Penicillin-Binding Protein C-terminus Family RD09_RS05705 PF02861 Clp amino terminal domain, pathogenicity island component RD09_RS05705 PF10431 C-terminal, D2-small domain, of ClpB protein RD09_RS05705 PF00004 ATPase family associated with various cellular activities (AAA) RD09_RS05705 PF07724 AAA domain (Cdc48 subfamily) RD09_RS05705 PF17871 AAA lid domain RD09_RS05710 PF04403 Paraquat-inducible protein A RD09_RS05715 PF02470 MlaD protein RD09_RS05725 PF14850 DNA-binding domain of Proline dehydrogenase RD09_RS05725 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RD09_RS05725 PF00171 Aldehyde dehydrogenase family RD09_RS05725 PF01619 Proline dehydrogenase RD09_RS05735 PF13458 Periplasmic binding protein RD09_RS05740 PF02653 Branched-chain amino acid transport system / permease component RD09_RS05745 PF02653 Branched-chain amino acid transport system / permease component RD09_RS05745 PF11862 Domain of unknown function (DUF3382) RD09_RS05750 PF00005 ABC transporter RD09_RS05750 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD09_RS05755 PF00005 ABC transporter RD09_RS05760 PF07690 Major Facilitator Superfamily RD09_RS05765 PF00440 Bacterial regulatory proteins, tetR family RD09_RS05775 PF03212 Pertactin RD09_RS05775 PF03797 Autotransporter beta-domain RD09_RS05785 PF00543 Nitrogen regulatory protein P-II RD09_RS05790 PF04380 Membrane fusogenic activity RD09_RS05805 PF00083 Sugar (and other) transporter RD09_RS05805 PF07690 Major Facilitator Superfamily RD09_RS05815 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD09_RS05820 PF00510 Cytochrome c oxidase subunit III RD09_RS05825 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD09_RS05830 PF02104 SURF1 family RD09_RS05855 PF13411 MerR HTH family regulatory protein RD09_RS05860 PF00403 Heavy-metal-associated domain RD09_RS05880 PF04055 Radical SAM superfamily RD09_RS05880 PF06968 Biotin and Thiamin Synthesis associated domain RD09_RS05895 PF08534 Redoxin RD09_RS05905 PF01738 Dienelactone hydrolase family RD09_RS05915 PF01967 MoaC family RD09_RS05925 PF02391 MoaE protein RD09_RS05930 PF00994 Probable molybdopterin binding domain RD09_RS05935 PF03453 MoeA N-terminal region (domain I and II) RD09_RS05935 PF00994 Probable molybdopterin binding domain RD09_RS05935 PF03454 MoeA C-terminal region (domain IV) RD09_RS05940 PF06463 Molybdenum Cofactor Synthesis C RD09_RS05940 PF04055 Radical SAM superfamily RD09_RS05960 PF00206 Lyase RD09_RS05960 PF14698 Argininosuccinate lyase C-terminal RD09_RS05965 PF00924 Mechanosensitive ion channel RD09_RS05970 PF02540 NAD synthase RD09_RS05970 PF00795 Carbon-nitrogen hydrolase RD09_RS05975 PF00543 Nitrogen regulatory protein P-II RD09_RS06000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS06000 PF03466 LysR substrate binding domain RD09_RS06010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS06015 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS06020 PF12911 N-terminal TM domain of oligopeptide transport permease C RD09_RS06020 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS06025 PF03193 RsgA GTPase RD09_RS06030 PF01435 Peptidase family M48 RD09_RS06035 PF00929 Exonuclease RD09_RS06040 PF03853 YjeF-related protein N-terminus RD09_RS06045 PF08223 PaaX-like protein C-terminal domain RD09_RS06045 PF07848 PaaX-like protein RD09_RS06050 PF05138 Phenylacetic acid catabolic protein RD09_RS06055 PF06243 Phenylacetic acid degradation B RD09_RS06060 PF05138 Phenylacetic acid catabolic protein RD09_RS06065 PF01883 Iron-sulfur cluster assembly protein RD09_RS06070 PF00970 Oxidoreductase FAD-binding domain RD09_RS06070 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS06070 PF00175 Oxidoreductase NAD-binding domain RD09_RS06080 PF00171 Aldehyde dehydrogenase family RD09_RS06085 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS06090 PF03061 Thioesterase superfamily RD09_RS06095 PF14535 AMP-binding enzyme C-terminal domain RD09_RS06095 PF00501 AMP-binding enzyme RD09_RS06100 PF16970 Type-1 fimbrial protein, A RD09_RS06115 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS06120 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD09_RS06120 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD09_RS06125 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD09_RS06130 PF02769 AIR synthase related protein, C-terminal domain RD09_RS06130 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RD09_RS06130 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RD09_RS06135 PF13332 Hemagglutinin repeat RD09_RS06135 PF05594 Haemagluttinin repeat RD09_RS06135 PF13018 Extended Signal Peptide of Type V secretion system RD09_RS06135 PF05860 haemagglutination activity domain RD09_RS06160 PF00596 Class II Aldolase and Adducin N-terminal domain RD09_RS06165 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS06170 PF01242 6-pyruvoyl tetrahydropterin synthase RD09_RS06180 PF00472 RF-1 domain RD09_RS06200 PF00701 Dihydrodipicolinate synthetase family RD09_RS06205 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS06230 PF14537 Cytochrome c3 RD09_RS06230 PF00890 FAD binding domain RD09_RS06235 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS06250 PF01266 FAD dependent oxidoreductase RD09_RS06250 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RD09_RS06255 PF00455 DeoR C terminal sensor domain RD09_RS06255 PF08220 DeoR-like helix-turn-helix domain RD09_RS06260 PF00005 ABC transporter RD09_RS06260 PF17912 MalK OB fold domain RD09_RS06265 PF17912 MalK OB fold domain RD09_RS06265 PF00005 ABC transporter RD09_RS06275 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS06300 PF01037 Lrp/AsnC ligand binding domain RD09_RS06305 PF01266 FAD dependent oxidoreductase RD09_RS06310 PF00149 Calcineurin-like phosphoesterase RD09_RS06310 PF12320 Type 5 capsule protein repressor C-terminal domain RD09_RS06335 PF00196 Bacterial regulatory proteins, luxR family RD09_RS06335 PF00072 Response regulator receiver domain RD09_RS06355 PF00571 CBS domain RD09_RS06355 PF00478 IMP dehydrogenase / GMP reductase domain RD09_RS06360 PF00958 GMP synthase C terminal domain RD09_RS06360 PF00117 Glutamine amidotransferase class-I RD09_RS06360 PF02540 NAD synthase RD09_RS06370 PF07804 HipA-like C-terminal domain RD09_RS06370 PF13657 HipA N-terminal domain RD09_RS06380 PF07690 Major Facilitator Superfamily RD09_RS06395 PF01979 Amidohydrolase family RD09_RS06405 PF00005 ABC transporter RD09_RS06410 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS06435 PF01965 DJ-1/PfpI family RD09_RS06440 PF01740 STAS domain RD09_RS06440 PF00916 Sulfate permease family RD09_RS06445 PF10996 Beta-Casp domain RD09_RS06445 PF00753 Metallo-beta-lactamase superfamily RD09_RS06445 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RD09_RS06460 PF12706 Beta-lactamase superfamily domain RD09_RS06465 PF12833 Helix-turn-helix domain RD09_RS06465 PF01965 DJ-1/PfpI family RD09_RS06470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS06470 PF03466 LysR substrate binding domain RD09_RS06485 PF08240 Alcohol dehydrogenase GroES-like domain RD09_RS06485 PF00107 Zinc-binding dehydrogenase RD09_RS06490 PF07690 Major Facilitator Superfamily RD09_RS06495 PF00392 Bacterial regulatory proteins, gntR family RD09_RS06495 PF00155 Aminotransferase class I and II RD09_RS06505 PF01810 LysE type translocator RD09_RS06515 PF01546 Peptidase family M20/M25/M40 RD09_RS06515 PF07687 Peptidase dimerisation domain RD09_RS06520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS06525 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS06530 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS06530 PF12911 N-terminal TM domain of oligopeptide transport permease C RD09_RS06535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS06535 PF00005 ABC transporter RD09_RS06540 PF00356 Bacterial regulatory proteins, lacI family RD09_RS06565 PF09335 SNARE associated Golgi protein RD09_RS06575 PF13847 Methyltransferase domain RD09_RS06590 PF00155 Aminotransferase class I and II RD09_RS06590 PF00392 Bacterial regulatory proteins, gntR family RD09_RS06600 PF00692 dUTPase RD09_RS06610 PF01632 Ribosomal protein L35 RD09_RS06615 PF00453 Ribosomal protein L20 RD09_RS06620 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RD09_RS06620 PF01409 tRNA synthetases class II core domain (F) RD09_RS06625 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RD09_RS06625 PF01588 Putative tRNA binding domain RD09_RS06625 PF03147 Ferredoxin-fold anticodon binding domain RD09_RS06625 PF03484 tRNA synthetase B5 domain RD09_RS06625 PF03483 B3/4 domain RD09_RS06630 PF00216 Bacterial DNA-binding protein RD09_RS06680 PF04231 Endonuclease I RD09_RS06700 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD09_RS06700 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD09_RS06705 PF04381 Putative exonuclease, RdgC RD09_RS06715 PF02515 CoA-transferase family III RD09_RS06720 PF03466 LysR substrate binding domain RD09_RS06720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS06740 PF00106 short chain dehydrogenase RD09_RS06750 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS06755 PF08402 TOBE domain RD09_RS06755 PF00005 ABC transporter RD09_RS06760 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD09_RS06760 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS06760 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD09_RS06765 PF00083 Sugar (and other) transporter RD09_RS06765 PF08946 Osmosensory transporter coiled coil RD09_RS06770 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS06770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS06775 PF00072 Response regulator receiver domain RD09_RS06775 PF00486 Transcriptional regulatory protein, C terminal RD09_RS06780 PF00154 recA bacterial DNA recombination protein RD09_RS06785 PF02631 RecX family RD09_RS06790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS06790 PF03466 LysR substrate binding domain RD09_RS06795 PF01717 Cobalamin-independent synthase, Catalytic domain RD09_RS06795 PF08267 Cobalamin-independent synthase, N-terminal domain RD09_RS06805 PF08442 ATP-grasp domain RD09_RS06805 PF00549 CoA-ligase RD09_RS06810 PF02629 CoA binding domain RD09_RS06810 PF00549 CoA-ligase RD09_RS06815 PF03741 Integral membrane protein TerC family RD09_RS06820 PF03741 Integral membrane protein TerC family RD09_RS06825 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RD09_RS06825 PF03900 Porphobilinogen deaminase, C-terminal domain RD09_RS06845 PF00719 Inorganic pyrophosphatase RD09_RS06850 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD09_RS06885 PF04972 BON domain RD09_RS06885 PF00263 Bacterial type II and III secretion system protein RD09_RS06885 PF13629 Pilus formation protein N terminal region RD09_RS06890 PF00437 Type II/IV secretion system protein RD09_RS06910 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS06915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD09_RS06915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD09_RS06920 PF02615 Malate/L-lactate dehydrogenase RD09_RS06925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS06925 PF03466 LysR substrate binding domain RD09_RS06935 PF01266 FAD dependent oxidoreductase RD09_RS06940 PF04267 Sarcosine oxidase, delta subunit family RD09_RS06945 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD09_RS06945 PF01571 Aminomethyltransferase folate-binding domain RD09_RS06945 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS06945 PF17806 Sarcosine oxidase A3 domain RD09_RS06955 PF00551 Formyl transferase RD09_RS06960 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS06970 PF00561 alpha/beta hydrolase fold RD09_RS06980 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RD09_RS06980 PF01565 FAD binding domain RD09_RS06985 PF05173 Dihydrodipicolinate reductase, C-terminus RD09_RS06985 PF01113 Dihydrodipicolinate reductase, N-terminus RD09_RS06990 PF04355 SmpA / OmlA family RD09_RS06995 PF01475 Ferric uptake regulator family RD09_RS07000 PF02463 RecF/RecN/SMC N terminal domain RD09_RS07005 PF01513 ATP-NAD kinase RD09_RS07010 PF01628 HrcA protein C terminal domain RD09_RS07010 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RD09_RS07015 PF00762 Ferrochelatase RD09_RS07025 PF01025 GrpE RD09_RS07035 PF00012 Hsp70 protein RD09_RS07040 PF00684 DnaJ central domain RD09_RS07040 PF01556 DnaJ C terminal domain RD09_RS07040 PF00226 DnaJ domain RD09_RS07045 PF00675 Insulinase (Peptidase family M16) RD09_RS07045 PF05193 Peptidase M16 inactive domain RD09_RS07065 PF17862 AAA+ lid domain RD09_RS07065 PF01434 Peptidase family M41 RD09_RS07065 PF00004 ATPase family associated with various cellular activities (AAA) RD09_RS07075 PF00034 Cytochrome c RD09_RS07090 PF00180 Isocitrate/isopropylmalate dehydrogenase RD09_RS07110 PF00072 Response regulator receiver domain RD09_RS07110 PF00486 Transcriptional regulatory protein, C terminal RD09_RS07115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS07115 PF13493 Domain of unknown function (DUF4118) RD09_RS07115 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS07115 PF13492 GAF domain RD09_RS07115 PF02702 Osmosensitive K+ channel His kinase sensor domain RD09_RS07120 PF02669 K+-transporting ATPase, c chain RD09_RS07130 PF03814 Potassium-transporting ATPase A subunit RD09_RS07140 PF00474 Sodium:solute symporter family RD09_RS07155 PF00893 Small Multidrug Resistance protein RD09_RS07160 PF00488 MutS domain V RD09_RS07160 PF01713 Smr domain RD09_RS07165 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS07170 PF01580 FtsK/SpoIIIE family RD09_RS07170 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RD09_RS07170 PF09397 Ftsk gamma domain RD09_RS07170 PF17854 FtsK alpha domain RD09_RS07175 PF03548 Outer membrane lipoprotein carrier protein LolA RD09_RS07180 PF16193 AAA C-terminal domain RD09_RS07180 PF12002 MgsA AAA+ ATPase C terminal RD09_RS07180 PF00004 ATPase family associated with various cellular activities (AAA) RD09_RS07185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD09_RS07185 PF02403 Seryl-tRNA synthetase N-terminal domain RD09_RS07210 PF00990 Diguanylate cyclase, GGDEF domain RD09_RS07210 PF17151 Periplasmic sensor domain RD09_RS07225 PF00593 TonB dependent receptor RD09_RS07225 PF07660 Secretin and TonB N terminus short domain RD09_RS07225 PF07715 TonB-dependent Receptor Plug Domain RD09_RS07230 PF07690 Major Facilitator Superfamily RD09_RS07250 PF06276 Ferric iron reductase FhuF-like transporter RD09_RS07250 PF04183 IucA / IucC family RD09_RS07260 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RD09_RS07270 PF00999 Sodium/hydrogen exchanger family RD09_RS07270 PF02254 TrkA-N domain RD09_RS07275 PF00106 short chain dehydrogenase RD09_RS07285 PF03883 Peroxide stress protein YaaA RD09_RS07295 PF12805 FUSC-like inner membrane protein yccS RD09_RS07305 PF00990 Diguanylate cyclase, GGDEF domain RD09_RS07315 PF04055 Radical SAM superfamily RD09_RS07315 PF06969 HemN C-terminal domain RD09_RS07325 PF00196 Bacterial regulatory proteins, luxR family RD09_RS07330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD09_RS07330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD09_RS07330 PF02824 TGS domain RD09_RS07330 PF03129 Anticodon binding domain RD09_RS07335 PF05198 Translation initiation factor IF-3, N-terminal domain RD09_RS07335 PF00707 Translation initiation factor IF-3, C-terminal domain RD09_RS07340 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RD09_RS07340 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RD09_RS07350 PF00381 PTS HPr component phosphorylation site RD09_RS07355 PF05524 PEP-utilising enzyme, N-terminal RD09_RS07355 PF00391 PEP-utilising enzyme, mobile domain RD09_RS07355 PF02896 PEP-utilising enzyme, TIM barrel domain RD09_RS07365 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD09_RS07375 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS07380 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS07385 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS07390 PF00005 ABC transporter RD09_RS07405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD09_RS07405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD09_RS07415 PF02293 AmiS/UreI family transporter RD09_RS07420 PF03069 Acetamidase/Formamidase family RD09_RS07435 PF01116 Fructose-bisphosphate aldolase class-II RD09_RS07445 PF01259 SAICAR synthetase RD09_RS07450 PF15723 Motility quorum-sensing regulator, toxin of MqsA RD09_RS07455 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD09_RS07460 PF02600 Disulfide bond formation protein DsbB RD09_RS07465 PF00731 AIR carboxylase RD09_RS07470 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RD09_RS07470 PF02222 ATP-grasp domain RD09_RS07475 PF01300 Telomere recombination RD09_RS07475 PF03481 Putative GTP-binding controlling metal-binding RD09_RS07480 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS07485 PF09339 IclR helix-turn-helix domain RD09_RS07485 PF01614 Bacterial transcriptional regulator RD09_RS07490 PF00491 Arginase family RD09_RS07495 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS07500 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS07505 PF00005 ABC transporter RD09_RS07510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD09_RS07510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD09_RS07520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS07520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS07520 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS07525 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD09_RS07525 PF00205 Thiamine pyrophosphate enzyme, central domain RD09_RS07525 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD09_RS07530 PF03466 LysR substrate binding domain RD09_RS07530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS07535 PF02899 Phage integrase, N-terminal SAM-like domain RD09_RS07535 PF00589 Phage integrase family RD09_RS07540 PF04073 Aminoacyl-tRNA editing domain RD09_RS07545 PF01174 SNO glutamine amidotransferase family RD09_RS07560 PF00768 D-alanyl-D-alanine carboxypeptidase RD09_RS07570 PF07690 Major Facilitator Superfamily RD09_RS07580 PF13361 UvrD-like helicase C-terminal domain RD09_RS07580 PF12705 PD-(D/E)XK nuclease superfamily RD09_RS07580 PF00580 UvrD/REP helicase N-terminal domain RD09_RS07590 PF12169 DNA polymerase III subunits gamma and tau domain III RD09_RS07590 PF12170 DNA polymerase III tau subunit V interacting with alpha RD09_RS07590 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RD09_RS07595 PF02575 YbaB/EbfC DNA-binding family RD09_RS07600 PF13662 Toprim domain RD09_RS07600 PF02132 RecR protein RD09_RS07620 PF04228 Putative neutral zinc metallopeptidase RD09_RS07625 PF01300 Telomere recombination RD09_RS07660 PF03358 NADPH-dependent FMN reductase RD09_RS07665 PF07311 Dodecin RD09_RS07670 PF05188 MutS domain II RD09_RS07670 PF05192 MutS domain III RD09_RS07670 PF05190 MutS family domain IV RD09_RS07670 PF01624 MutS domain I RD09_RS07670 PF00488 MutS domain V RD09_RS07675 PF08007 Cupin superfamily protein RD09_RS07680 PF16970 Type-1 fimbrial protein, A RD09_RS07685 PF06804 NlpB/DapX lipoprotein RD09_RS07690 PF00701 Dihydrodipicolinate synthetase family RD09_RS07695 PF02163 Peptidase family M50 RD09_RS07705 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS07710 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS07715 PF00005 ABC transporter RD09_RS07720 PF13291 ACT domain RD09_RS07720 PF04607 Region found in RelA / SpoT proteins RD09_RS07720 PF02824 TGS domain RD09_RS07725 PF01192 RNA polymerase Rpb6 RD09_RS07730 PF00625 Guanylate kinase RD09_RS07735 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD09_RS07740 PF00034 Cytochrome c RD09_RS07750 PF00877 NlpC/P60 family RD09_RS07755 PF01048 Phosphorylase superfamily RD09_RS07755 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RD09_RS07775 PF08340 Domain of unknown function (DUF1732) RD09_RS07775 PF03755 YicC-like family, N-terminal region RD09_RS07780 PF03725 3' exoribonuclease family, domain 2 RD09_RS07780 PF01138 3' exoribonuclease family, domain 1 RD09_RS07790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS07790 PF03466 LysR substrate binding domain RD09_RS07795 PF00990 Diguanylate cyclase, GGDEF domain RD09_RS07795 PF00563 EAL domain RD09_RS07795 PF17154 Gammaproteobacterial periplasmic sensor domain RD09_RS07795 PF00672 HAMP domain RD09_RS07800 PF01725 Ham1 family RD09_RS07810 PF06969 HemN C-terminal domain RD09_RS07810 PF04055 Radical SAM superfamily RD09_RS07815 PF00120 Glutamine synthetase, catalytic domain RD09_RS07815 PF03951 Glutamine synthetase, beta-Grasp domain RD09_RS07820 PF00989 PAS fold RD09_RS07820 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS07820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS07825 PF02954 Bacterial regulatory protein, Fis family RD09_RS07825 PF00158 Sigma-54 interaction domain RD09_RS07825 PF00072 Response regulator receiver domain RD09_RS07830 PF03466 LysR substrate binding domain RD09_RS07830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS07835 PF02678 Pirin RD09_RS07835 PF17954 Quercetinase C-terminal cupin domain RD09_RS07840 PF02678 Pirin RD09_RS07840 PF05726 Pirin C-terminal cupin domain RD09_RS07850 PF08402 TOBE domain RD09_RS07850 PF00005 ABC transporter RD09_RS07855 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS07865 PF00970 Oxidoreductase FAD-binding domain RD09_RS07865 PF00175 Oxidoreductase NAD-binding domain RD09_RS07870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS07870 PF03466 LysR substrate binding domain RD09_RS07880 PF00248 Aldo/keto reductase family RD09_RS07890 PF01042 Endoribonuclease L-PSP RD09_RS07895 PF00271 Helicase conserved C-terminal domain RD09_RS07895 PF17191 RecG wedge domain RD09_RS07895 PF00270 DEAD/DEAH box helicase RD09_RS07900 PF03466 LysR substrate binding domain RD09_RS07900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS07905 PF03466 LysR substrate binding domain RD09_RS07905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS07910 PF00171 Aldehyde dehydrogenase family RD09_RS07915 PF00210 Ferritin-like domain RD09_RS07940 PF00005 ABC transporter RD09_RS07950 PF00534 Glycosyl transferases group 1 RD09_RS07960 PF02563 Polysaccharide biosynthesis/export protein RD09_RS07965 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD09_RS07965 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD09_RS07965 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD09_RS07970 PF01370 NAD dependent epimerase/dehydratase family RD09_RS07975 PF05159 Capsule polysaccharide biosynthesis protein RD09_RS07980 PF05159 Capsule polysaccharide biosynthesis protein RD09_RS07990 PF00106 short chain dehydrogenase RD09_RS08005 PF14759 Reductase C-terminal RD09_RS08005 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS08015 PF00005 ABC transporter RD09_RS08020 PF00005 ABC transporter RD09_RS08020 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD09_RS08025 PF11862 Domain of unknown function (DUF3382) RD09_RS08025 PF02653 Branched-chain amino acid transport system / permease component RD09_RS08035 PF03741 Integral membrane protein TerC family RD09_RS08045 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS08060 PF07726 ATPase family associated with various cellular activities (AAA) RD09_RS08060 PF17863 AAA lid domain RD09_RS08090 PF00884 Sulfatase RD09_RS08115 PF00196 Bacterial regulatory proteins, luxR family RD09_RS08115 PF00072 Response regulator receiver domain RD09_RS08120 PF12951 Passenger-associated-transport-repeat RD09_RS08120 PF00082 Subtilase family RD09_RS08120 PF03797 Autotransporter beta-domain RD09_RS08125 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD09_RS08130 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RD09_RS08135 PF00043 Glutathione S-transferase, C-terminal domain RD09_RS08135 PF02798 Glutathione S-transferase, N-terminal domain RD09_RS08140 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD09_RS08150 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS08160 PF01070 FMN-dependent dehydrogenase RD09_RS08165 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD09_RS08180 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS08185 PF03466 LysR substrate binding domain RD09_RS08190 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS08215 PF03358 NADPH-dependent FMN reductase RD09_RS08240 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS08250 PF03466 LysR substrate binding domain RD09_RS08250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS08265 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS08270 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RD09_RS08270 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD09_RS08270 PF13244 Domain of unknown function (DUF4040) RD09_RS08270 PF00361 Proton-conducting membrane transporter RD09_RS08275 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD09_RS08280 PF00361 Proton-conducting membrane transporter RD09_RS08285 PF01899 Na+/H+ ion antiporter subunit RD09_RS08290 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RD09_RS08315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD09_RS08320 PF17676 LD-carboxypeptidase C-terminal domain RD09_RS08320 PF02016 LD-carboxypeptidase N-terminal domain RD09_RS08325 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS08330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD09_RS08340 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS08345 PF12848 ABC transporter RD09_RS08345 PF00005 ABC transporter RD09_RS08350 PF00005 ABC transporter RD09_RS08385 PF00175 Oxidoreductase NAD-binding domain RD09_RS08385 PF00042 Globin RD09_RS08385 PF00970 Oxidoreductase FAD-binding domain RD09_RS08390 PF02082 Transcriptional regulator RD09_RS08395 PF01266 FAD dependent oxidoreductase RD09_RS08410 PF01571 Aminomethyltransferase folate-binding domain RD09_RS08415 PF02618 YceG-like family RD09_RS08420 PF02223 Thymidylate kinase RD09_RS08425 PF12169 DNA polymerase III subunits gamma and tau domain III RD09_RS08430 PF01026 TatD related DNase RD09_RS08445 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS08455 PF00005 ABC transporter RD09_RS08460 PF00491 Arginase family RD09_RS08465 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD09_RS08465 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD09_RS08470 PF00171 Aldehyde dehydrogenase family RD09_RS08475 PF01546 Peptidase family M20/M25/M40 RD09_RS08475 PF07687 Peptidase dimerisation domain RD09_RS08480 PF00205 Thiamine pyrophosphate enzyme, central domain RD09_RS08480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD09_RS08480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD09_RS08490 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD09_RS08490 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD09_RS08500 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS08500 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD09_RS08505 PF07729 FCD domain RD09_RS08505 PF00392 Bacterial regulatory proteins, gntR family RD09_RS08515 PF04343 Protein of unknown function, DUF488 RD09_RS08535 PF01425 Amidase RD09_RS08540 PF07286 Protein of unknown function (DUF1445) RD09_RS08550 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS08550 PF00072 Response regulator receiver domain RD09_RS08550 PF00989 PAS fold RD09_RS08550 PF01627 Hpt domain RD09_RS08550 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS08550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS08555 PF00196 Bacterial regulatory proteins, luxR family RD09_RS08555 PF00072 Response regulator receiver domain RD09_RS08560 PF05860 haemagglutination activity domain RD09_RS08560 PF13332 Hemagglutinin repeat RD09_RS08560 PF05594 Haemagluttinin repeat RD09_RS08560 PF13018 Extended Signal Peptide of Type V secretion system RD09_RS08565 PF16970 Type-1 fimbrial protein, A RD09_RS08570 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RD09_RS08570 PF02753 Pili assembly chaperone PapD, C-terminal domain RD09_RS08575 PF13953 PapC C-terminal domain RD09_RS08575 PF13954 PapC N-terminal domain RD09_RS08575 PF00577 Outer membrane usher protein RD09_RS08580 PF00419 Fimbrial protein RD09_RS08585 PF08479 POTRA domain, ShlB-type RD09_RS08585 PF17287 POTRA domain RD09_RS08585 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD09_RS08600 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS08625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS08625 PF03466 LysR substrate binding domain RD09_RS08635 PF05378 Hydantoinase/oxoprolinase N-terminal region RD09_RS08635 PF01968 Hydantoinase/oxoprolinase RD09_RS08650 PF00924 Mechanosensitive ion channel RD09_RS08650 PF05552 Conserved TM helix RD09_RS08660 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS08665 PF00588 SpoU rRNA Methylase family RD09_RS08670 PF00459 Inositol monophosphatase family RD09_RS08675 PF03741 Integral membrane protein TerC family RD09_RS08675 PF03471 Transporter associated domain RD09_RS08680 PF02673 Bacitracin resistance protein BacA RD09_RS08685 PF00149 Calcineurin-like phosphoesterase RD09_RS08690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RD09_RS08700 PF09190 DALR domain RD09_RS08700 PF01406 tRNA synthetases class I (C) catalytic domain RD09_RS08705 PF12833 Helix-turn-helix domain RD09_RS08705 PF02805 Metal binding domain of Ada RD09_RS08705 PF06029 AlkA N-terminal domain RD09_RS08705 PF00730 HhH-GPD superfamily base excision DNA repair protein RD09_RS08710 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RD09_RS08720 PF09179 TilS substrate binding domain RD09_RS08720 PF01171 PP-loop family RD09_RS08725 PF00696 Amino acid kinase family RD09_RS08725 PF01842 ACT domain RD09_RS08725 PF13840 ACT domain RD09_RS08750 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD09_RS08750 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD09_RS08755 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD09_RS08755 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD09_RS08760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD09_RS08765 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS08770 PF00561 alpha/beta hydrolase fold RD09_RS08775 PF01958 Domain of unknown function DUF108 RD09_RS08775 PF03447 Homoserine dehydrogenase, NAD binding domain RD09_RS08790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS08790 PF03466 LysR substrate binding domain RD09_RS08810 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS08815 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS08820 PF08402 TOBE domain RD09_RS08820 PF00005 ABC transporter RD09_RS08830 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS08830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD09_RS08835 PF01614 Bacterial transcriptional regulator RD09_RS08835 PF09339 IclR helix-turn-helix domain RD09_RS08840 PF13380 CoA binding domain RD09_RS08845 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS08850 PF01042 Endoribonuclease L-PSP RD09_RS08875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD09_RS08885 PF00535 Glycosyl transferase family 2 RD09_RS08890 PF01522 Polysaccharide deacetylase RD09_RS08890 PF14883 Hypothetical glycosyl hydrolase family 13 RD09_RS08910 PF12802 MarR family RD09_RS08925 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD09_RS08925 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD09_RS08925 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD09_RS08925 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD09_RS08930 PF00342 Phosphoglucose isomerase RD09_RS08935 PF00132 Bacterial transferase hexapeptide (six repeats) RD09_RS08945 PF02146 Sir2 family RD09_RS08950 PF00459 Inositol monophosphatase family RD09_RS08955 PF00171 Aldehyde dehydrogenase family RD09_RS08960 PF00202 Aminotransferase class-III RD09_RS08965 PF00392 Bacterial regulatory proteins, gntR family RD09_RS08965 PF00155 Aminotransferase class I and II RD09_RS08975 PF13361 UvrD-like helicase C-terminal domain RD09_RS08975 PF00580 UvrD/REP helicase N-terminal domain RD09_RS08980 PF01544 CorA-like Mg2+ transporter protein RD09_RS08990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS08995 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS09000 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS09000 PF12911 N-terminal TM domain of oligopeptide transport permease C RD09_RS09005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS09005 PF00005 ABC transporter RD09_RS09010 PF01047 MarR family RD09_RS09025 PF08479 POTRA domain, ShlB-type RD09_RS09025 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD09_RS09030 PF00990 Diguanylate cyclase, GGDEF domain RD09_RS09030 PF00563 EAL domain RD09_RS09030 PF03707 Bacterial signalling protein N terminal repeat RD09_RS09060 PF04972 BON domain RD09_RS09060 PF00263 Bacterial type II and III secretion system protein RD09_RS09060 PF13629 Pilus formation protein N terminal region RD09_RS09070 PF00437 Type II/IV secretion system protein RD09_RS09100 PF02954 Bacterial regulatory protein, Fis family RD09_RS09100 PF00072 Response regulator receiver domain RD09_RS09100 PF00158 Sigma-54 interaction domain RD09_RS09115 PF08281 Sigma-70, region 4 RD09_RS09115 PF04542 Sigma-70 region 2 RD09_RS09125 PF00034 Cytochrome c RD09_RS09130 PF09285 Elongation factor P, C-terminal RD09_RS09130 PF01132 Elongation factor P (EF-P) OB domain RD09_RS09130 PF08207 Elongation factor P (EF-P) KOW-like domain RD09_RS09145 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RD09_RS09150 PF00330 Aconitase family (aconitate hydratase) RD09_RS09150 PF00694 Aconitase C-terminal domain RD09_RS09160 PF00593 TonB dependent receptor RD09_RS09160 PF07715 TonB-dependent Receptor Plug Domain RD09_RS09175 PF00691 OmpA family RD09_RS09185 PF00330 Aconitase family (aconitate hydratase) RD09_RS09185 PF06434 Aconitate hydratase 2 N-terminus RD09_RS09185 PF11791 Aconitate B N-terminal domain RD09_RS09210 PF00892 EamA-like transporter family RD09_RS09215 PF01925 Sulfite exporter TauE/SafE RD09_RS09230 PF03466 LysR substrate binding domain RD09_RS09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS09235 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RD09_RS09235 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RD09_RS09245 PF03466 LysR substrate binding domain RD09_RS09245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS09280 PF03212 Pertactin RD09_RS09280 PF03797 Autotransporter beta-domain RD09_RS09285 PF02545 Maf-like protein RD09_RS09290 PF02590 Predicted SPOUT methyltransferase RD09_RS09300 PF01467 Cytidylyltransferase-like RD09_RS09305 PF01218 Coproporphyrinogen III oxidase RD09_RS09310 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RD09_RS09310 PF02844 Phosphoribosylglycinamide synthetase, N domain RD09_RS09310 PF02843 Phosphoribosylglycinamide synthetase, C domain RD09_RS09315 PF01709 Transcriptional regulator RD09_RS09320 PF05872 Bacterial protein of unknown function (DUF853) RD09_RS09325 PF01235 Sodium:alanine symporter family RD09_RS09330 PF00202 Aminotransferase class-III RD09_RS09335 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD09_RS09340 PF00171 Aldehyde dehydrogenase family RD09_RS09350 PF07687 Peptidase dimerisation domain RD09_RS09350 PF01546 Peptidase family M20/M25/M40 RD09_RS09355 PF00850 Histone deacetylase domain RD09_RS09360 PF07883 Cupin domain RD09_RS09365 PF00202 Aminotransferase class-III RD09_RS09375 PF00005 ABC transporter RD09_RS09375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS09380 PF12911 N-terminal TM domain of oligopeptide transport permease C RD09_RS09380 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS09385 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS09390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS09395 PF00392 Bacterial regulatory proteins, gntR family RD09_RS09395 PF00155 Aminotransferase class I and II RD09_RS09400 PF00180 Isocitrate/isopropylmalate dehydrogenase RD09_RS09405 PF07690 Major Facilitator Superfamily RD09_RS09410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD09_RS09410 PF00529 HlyD membrane-fusion protein of T1SS RD09_RS09420 PF01047 MarR family RD09_RS09430 PF00892 EamA-like transporter family RD09_RS09435 PF08240 Alcohol dehydrogenase GroES-like domain RD09_RS09435 PF00107 Zinc-binding dehydrogenase RD09_RS09440 PF01435 Peptidase family M48 RD09_RS09450 PF00581 Rhodanese-like domain RD09_RS09460 PF03466 LysR substrate binding domain RD09_RS09460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS09465 PF00005 ABC transporter RD09_RS09465 PF08402 TOBE domain RD09_RS09470 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS09475 PF13419 Haloacid dehalogenase-like hydrolase RD09_RS09485 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS09505 PF00860 Permease family RD09_RS09510 PF00672 HAMP domain RD09_RS09510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD09_RS09510 PF02203 Tar ligand binding domain homologue RD09_RS09515 PF03449 Transcription elongation factor, N-terminal RD09_RS09515 PF01272 Transcription elongation factor, GreA/GreB, C-term RD09_RS09545 PF00771 FHIPEP family RD09_RS09610 PF01514 Secretory protein of YscJ/FliF family RD09_RS09620 PF02108 Flagellar assembly protein FliH RD09_RS09625 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD09_RS09625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD09_RS09625 PF18269 T3SS EscN ATPase C-terminal domain RD09_RS09640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD09_RS09645 PF00813 FliP family RD09_RS09650 PF01313 Bacterial export proteins, family 3 RD09_RS09655 PF01311 Bacterial export proteins, family 1 RD09_RS09660 PF01312 FlhB HrpN YscU SpaS Family RD09_RS09670 PF00263 Bacterial type II and III secretion system protein RD09_RS09670 PF03958 Bacterial type II/III secretion system short domain RD09_RS09675 PF08281 Sigma-70, region 4 RD09_RS09675 PF04542 Sigma-70 region 2 RD09_RS09695 PF07228 Stage II sporulation protein E (SpoIIE) RD09_RS09695 PF00672 HAMP domain RD09_RS09705 PF01168 Alanine racemase, N-terminal domain RD09_RS09705 PF00842 Alanine racemase, C-terminal domain RD09_RS09710 PF13581 Histidine kinase-like ATPase domain RD09_RS09715 PF01740 STAS domain RD09_RS09720 PF13396 Phospholipase_D-nuclease N-terminal RD09_RS09720 PF13091 PLD-like domain RD09_RS09730 PF03797 Autotransporter beta-domain RD09_RS09750 PF16868 NMT1-like family RD09_RS09755 PF00202 Aminotransferase class-III RD09_RS09765 PF12802 MarR family RD09_RS09770 PF00583 Acetyltransferase (GNAT) family RD09_RS09780 PF01205 Uncharacterized protein family UPF0029 RD09_RS09785 PF00085 Thioredoxin RD09_RS09795 PF00860 Permease family RD09_RS09800 PF00814 Glycoprotease family RD09_RS09810 PF02660 Glycerol-3-phosphate acyltransferase RD09_RS09815 PF01975 Survival protein SurE RD09_RS09825 PF01476 LysM domain RD09_RS09825 PF01551 Peptidase family M23 RD09_RS09845 PF05958 tRNA (Uracil-5-)-methyltransferase RD09_RS09850 PF00376 MerR family regulatory protein RD09_RS09850 PF09278 MerR, DNA binding RD09_RS09860 PF08534 Redoxin RD09_RS09860 PF00462 Glutaredoxin RD09_RS09865 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS09865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD09_RS09870 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RD09_RS09875 PF03009 Glycerophosphoryl diester phosphodiesterase family RD09_RS09880 PF13145 PPIC-type PPIASE domain RD09_RS09885 PF13472 GDSL-like Lipase/Acylhydrolase family RD09_RS09890 PF00005 ABC transporter RD09_RS09905 PF04972 BON domain RD09_RS09915 PF05532 CsbD-like RD09_RS09920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD09_RS09920 PF02875 Mur ligase family, glutamate ligase domain RD09_RS09920 PF08245 Mur ligase middle domain RD09_RS09925 PF02875 Mur ligase family, glutamate ligase domain RD09_RS09925 PF08443 RimK-like ATP-grasp domain RD09_RS09925 PF08245 Mur ligase middle domain RD09_RS09945 PF04305 Protein of unknown function (DUF455) RD09_RS09950 PF13406 Transglycosylase SLT domain RD09_RS09965 PF01037 Lrp/AsnC ligand binding domain RD09_RS09975 PF02441 Flavoprotein RD09_RS09975 PF04127 DNA / pantothenate metabolism flavoprotein RD09_RS09980 PF01252 Signal peptidase (SPase) II RD09_RS09985 PF08264 Anticodon-binding domain of tRNA RD09_RS09985 PF00133 tRNA synthetases class I (I, L, M and V) RD09_RS09985 PF06827 Zinc finger found in FPG and IleRS RD09_RS09990 PF06574 FAD synthetase RD09_RS09990 PF01687 Riboflavin kinase RD09_RS09995 PF01029 NusB family RD09_RS09995 PF01189 16S rRNA methyltransferase RsmB/F RD09_RS10015 PF00580 UvrD/REP helicase N-terminal domain RD09_RS10015 PF13361 UvrD-like helicase C-terminal domain RD09_RS10020 PF07715 TonB-dependent Receptor Plug Domain RD09_RS10025 PF12848 ABC transporter RD09_RS10025 PF00005 ABC transporter RD09_RS10030 PF05175 Methyltransferase small domain RD09_RS10035 PF07687 Peptidase dimerisation domain RD09_RS10035 PF01546 Peptidase family M20/M25/M40 RD09_RS10040 PF00132 Bacterial transferase hexapeptide (six repeats) RD09_RS10040 PF14602 Hexapeptide repeat of succinyl-transferase RD09_RS10040 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RD09_RS10075 PF00313 'Cold-shock' DNA-binding domain RD09_RS10085 PF00313 'Cold-shock' DNA-binding domain RD09_RS10090 PF03350 Uncharacterized protein family, UPF0114 RD09_RS10095 PF05698 Bacterial trigger factor protein (TF) C-terminus RD09_RS10095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD09_RS10095 PF05697 Bacterial trigger factor protein (TF) RD09_RS10100 PF00574 Clp protease RD09_RS10105 PF07724 AAA domain (Cdc48 subfamily) RD09_RS10105 PF10431 C-terminal, D2-small domain, of ClpB protein RD09_RS10105 PF06689 ClpX C4-type zinc finger RD09_RS10110 PF00004 ATPase family associated with various cellular activities (AAA) RD09_RS10110 PF05362 Lon protease (S16) C-terminal proteolytic domain RD09_RS10110 PF02190 ATP-dependent protease La (LON) substrate-binding domain RD09_RS10115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS10115 PF03466 LysR substrate binding domain RD09_RS10120 PF02515 CoA-transferase family III RD09_RS10125 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS10130 PF01575 MaoC like domain RD09_RS10135 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS10145 PF00108 Thiolase, N-terminal domain RD09_RS10145 PF02803 Thiolase, C-terminal domain RD09_RS10155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS10155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS10155 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS10165 PF01144 Coenzyme A transferase RD09_RS10170 PF01144 Coenzyme A transferase RD09_RS10175 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS10195 PF03797 Autotransporter beta-domain RD09_RS10195 PF03212 Pertactin RD09_RS10200 PF00717 Peptidase S24-like RD09_RS10200 PF01726 LexA DNA binding domain RD09_RS10205 PF00155 Aminotransferase class I and II RD09_RS10210 PF17757 UvrB interaction domain RD09_RS10210 PF12344 Ultra-violet resistance protein B RD09_RS10210 PF02151 UvrB/uvrC motif RD09_RS10210 PF04851 Type III restriction enzyme, res subunit RD09_RS10210 PF00271 Helicase conserved C-terminal domain RD09_RS10215 PF01451 Low molecular weight phosphotyrosine protein phosphatase RD09_RS10220 PF02082 Transcriptional regulator RD09_RS10225 PF00266 Aminotransferase class-V RD09_RS10230 PF01592 NifU-like N terminal domain RD09_RS10235 PF01521 Iron-sulphur cluster biosynthesis RD09_RS10240 PF07743 HSCB C-terminal oligomerisation domain RD09_RS10245 PF00012 Hsp70 protein RD09_RS10250 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS10255 PF04384 Iron-sulphur cluster assembly RD09_RS10260 PF02142 MGS-like domain RD09_RS10270 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS10280 PF03812 2-keto-3-deoxygluconate permease RD09_RS10285 PF17042 Nucleotide-binding C-terminal domain RD09_RS10285 PF07005 Sugar-binding N-terminal domain RD09_RS10290 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD09_RS10305 PF02261 Aspartate decarboxylase RD09_RS10310 PF00175 Oxidoreductase NAD-binding domain RD09_RS10310 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS10310 PF00970 Oxidoreductase FAD-binding domain RD09_RS10315 PF01266 FAD dependent oxidoreductase RD09_RS10320 PF13416 Bacterial extracellular solute-binding protein RD09_RS10325 PF03466 LysR substrate binding domain RD09_RS10325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS10340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS10345 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS10350 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS10355 PF00005 ABC transporter RD09_RS10355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS10360 PF01425 Amidase RD09_RS10405 PF02272 DHHA1 domain RD09_RS10405 PF01411 tRNA synthetases class II (A) RD09_RS10405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD09_RS10410 PF01206 Sulfurtransferase TusA RD09_RS10420 PF00886 Ribosomal protein S16 RD09_RS10425 PF01782 RimM N-terminal domain RD09_RS10430 PF01746 tRNA (Guanine-1)-methyltransferase RD09_RS10435 PF00266 Aminotransferase class-V RD09_RS10455 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS10455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS10455 PF08521 Two-component sensor kinase N-terminal RD09_RS10460 PF00486 Transcriptional regulatory protein, C terminal RD09_RS10460 PF00072 Response regulator receiver domain RD09_RS10470 PF10458 Valyl tRNA synthetase tRNA binding arm RD09_RS10470 PF00133 tRNA synthetases class I (I, L, M and V) RD09_RS10470 PF08264 Anticodon-binding domain of tRNA RD09_RS10475 PF00334 Nucleoside diphosphate kinase RD09_RS10480 PF04055 Radical SAM superfamily RD09_RS10490 PF04551 GcpE protein RD09_RS10495 PF13393 Histidyl-tRNA synthetase RD09_RS10495 PF03129 Anticodon binding domain RD09_RS10500 PF09976 Tetratricopeptide repeat-like domain RD09_RS10505 PF13360 PQQ-like domain RD09_RS10510 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RD09_RS10510 PF01926 50S ribosome-binding GTPase RD09_RS10515 PF00155 Aminotransferase class I and II RD09_RS10520 PF17209 Hfq protein RD09_RS10525 PF01926 50S ribosome-binding GTPase RD09_RS10525 PF13167 GTP-binding GTPase N-terminal RD09_RS10525 PF16360 GTP-binding GTPase Middle Region RD09_RS10530 PF12221 Bacterial membrane protein N terminal RD09_RS10530 PF01145 SPFH domain / Band 7 family RD09_RS10535 PF01145 SPFH domain / Band 7 family RD09_RS10540 PF13393 Histidyl-tRNA synthetase RD09_RS10545 PF00709 Adenylosuccinate synthetase RD09_RS10550 PF00156 Phosphoribosyl transferase domain RD09_RS10555 PF01165 Ribosomal protein S21 RD09_RS10560 PF08275 DNA primase catalytic core, N-terminal domain RD09_RS10560 PF01807 CHC2 zinc finger RD09_RS10560 PF10410 DnaB-helicase binding domain of primase RD09_RS10560 PF08278 DNA primase DnaG DnaB-binding RD09_RS10565 PF04546 Sigma-70, non-essential region RD09_RS10565 PF03979 Sigma-70 factor, region 1.1 RD09_RS10565 PF00140 Sigma-70 factor, region 1.2 RD09_RS10565 PF04542 Sigma-70 region 2 RD09_RS10565 PF04539 Sigma-70 region 3 RD09_RS10565 PF04545 Sigma-70, region 4 RD09_RS10595 PF01594 AI-2E family transporter RD09_RS10600 PF01061 ABC-2 type transporter RD09_RS10605 PF00005 ABC transporter RD09_RS10630 PF13746 4Fe-4S dicluster domain RD09_RS10630 PF12801 4Fe-4S binding domain RD09_RS10630 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RD09_RS10635 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD09_RS10635 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RD09_RS10670 PF00202 Aminotransferase class-III RD09_RS10675 PF00155 Aminotransferase class I and II RD09_RS10685 PF13649 Methyltransferase domain RD09_RS10690 PF03788 LrgA family RD09_RS10695 PF04172 LrgB-like family RD09_RS10710 PF00158 Sigma-54 interaction domain RD09_RS10710 PF02954 Bacterial regulatory protein, Fis family RD09_RS10710 PF01590 GAF domain RD09_RS10715 PF00171 Aldehyde dehydrogenase family RD09_RS10730 PF04286 Protein of unknown function (DUF445) RD09_RS10735 PF03466 LysR substrate binding domain RD09_RS10735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS10740 PF02567 Phenazine biosynthesis-like protein RD09_RS10745 PF07237 Protein of unknown function (DUF1428) RD09_RS10750 PF02805 Metal binding domain of Ada RD09_RS10750 PF12833 Helix-turn-helix domain RD09_RS10760 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD09_RS10760 PF03625 Domain of unknown function DUF302 RD09_RS10780 PF01740 STAS domain RD09_RS10780 PF00916 Sulfate permease family RD09_RS10795 PF02535 ZIP Zinc transporter RD09_RS10805 PF00005 ABC transporter RD09_RS10805 PF00664 ABC transporter transmembrane region RD09_RS10815 PF00583 Acetyltransferase (GNAT) family RD09_RS10830 PF07690 Major Facilitator Superfamily RD09_RS10850 PF06719 AraC-type transcriptional regulator N-terminus RD09_RS10850 PF12833 Helix-turn-helix domain RD09_RS10860 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD09_RS10865 PF01799 [2Fe-2S] binding domain RD09_RS10865 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS10875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS10875 PF03466 LysR substrate binding domain RD09_RS10900 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS10900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD09_RS10925 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS10930 PF01522 Polysaccharide deacetylase RD09_RS10940 PF01425 Amidase RD09_RS10945 PF01425 Amidase RD09_RS10980 PF01152 Bacterial-like globin RD09_RS11000 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS11005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS11005 PF03466 LysR substrate binding domain RD09_RS11010 PF12228 Protein of unknown function (DUF3604) RD09_RS11020 PF00108 Thiolase, N-terminal domain RD09_RS11020 PF02803 Thiolase, C-terminal domain RD09_RS11025 PF00501 AMP-binding enzyme RD09_RS11025 PF14535 AMP-binding enzyme C-terminal domain RD09_RS11030 PF07859 alpha/beta hydrolase fold RD09_RS11035 PF02515 CoA-transferase family III RD09_RS11040 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS11050 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS11055 PF00866 Ring hydroxylating beta subunit RD09_RS11060 PF00355 Rieske [2Fe-2S] domain RD09_RS11060 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD09_RS11065 PF13458 Periplasmic binding protein RD09_RS11070 PF02653 Branched-chain amino acid transport system / permease component RD09_RS11075 PF02653 Branched-chain amino acid transport system / permease component RD09_RS11075 PF11862 Domain of unknown function (DUF3382) RD09_RS11090 PF00463 Isocitrate lyase family RD09_RS11095 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RD09_RS11095 PF14489 QueF-like protein RD09_RS11110 PF01066 CDP-alcohol phosphatidyltransferase RD09_RS11115 PF08459 UvrC Helix-hairpin-helix N-terminal RD09_RS11115 PF01541 GIY-YIG catalytic domain RD09_RS11115 PF02151 UvrB/uvrC motif RD09_RS11120 PF00933 Glycosyl hydrolase family 3 N terminal domain RD09_RS11125 PF01648 4'-phosphopantetheinyl transferase superfamily RD09_RS11130 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RD09_RS11135 PF02321 Outer membrane efflux protein RD09_RS11135 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RD09_RS11140 PF00873 AcrB/AcrD/AcrF family RD09_RS11145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD09_RS11145 PF00529 HlyD membrane-fusion protein of T1SS RD09_RS11165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS11165 PF03459 TOBE domain RD09_RS11170 PF00005 ABC transporter RD09_RS11185 PF00080 Copper/zinc superoxide dismutase (SODC) RD09_RS11190 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS11200 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS11210 PF00392 Bacterial regulatory proteins, gntR family RD09_RS11210 PF07729 FCD domain RD09_RS11220 PF00108 Thiolase, N-terminal domain RD09_RS11220 PF02803 Thiolase, C-terminal domain RD09_RS11225 PF01361 Tautomerase enzyme RD09_RS11230 PF00005 ABC transporter RD09_RS11230 PF00571 CBS domain RD09_RS11235 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS11255 PF07690 Major Facilitator Superfamily RD09_RS11260 PF00830 Ribosomal L28 family RD09_RS11265 PF00471 Ribosomal protein L33 RD09_RS11270 PF01740 STAS domain RD09_RS11270 PF00916 Sulfate permease family RD09_RS11290 PF01047 MarR family RD09_RS11295 PF07690 Major Facilitator Superfamily RD09_RS11300 PF13603 Leucyl-tRNA synthetase, Domain 2 RD09_RS11300 PF09334 tRNA synthetases class I (M) RD09_RS11300 PF08264 Anticodon-binding domain of tRNA RD09_RS11300 PF00133 tRNA synthetases class I (I, L, M and V) RD09_RS11315 PF00171 Aldehyde dehydrogenase family RD09_RS11325 PF01425 Amidase RD09_RS11330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD09_RS11330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD09_RS11380 PF00575 S1 RNA binding domain RD09_RS11380 PF10150 Ribonuclease E/G family RD09_RS11385 PF01842 ACT domain RD09_RS11385 PF00800 Prephenate dehydratase RD09_RS11395 PF07690 Major Facilitator Superfamily RD09_RS11400 PF00664 ABC transporter transmembrane region RD09_RS11400 PF00005 ABC transporter RD09_RS11405 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD09_RS11415 PF03692 Putative zinc- or iron-chelating domain RD09_RS11430 PF00884 Sulfatase RD09_RS11435 PF00534 Glycosyl transferases group 1 RD09_RS11435 PF13439 Glycosyltransferase Family 4 RD09_RS11440 PF00535 Glycosyl transferase family 2 RD09_RS11445 PF01522 Polysaccharide deacetylase RD09_RS11450 PF00534 Glycosyl transferases group 1 RD09_RS11450 PF13439 Glycosyltransferase Family 4 RD09_RS11455 PF01336 OB-fold nucleic acid binding domain RD09_RS11455 PF02811 PHP domain RD09_RS11455 PF14579 Helix-hairpin-helix motif RD09_RS11455 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RD09_RS11455 PF07733 Bacterial DNA polymerase III alpha NTPase domain RD09_RS11465 PF11898 Domain of unknown function (DUF3418) RD09_RS11465 PF00271 Helicase conserved C-terminal domain RD09_RS11465 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RD09_RS11465 PF00270 DEAD/DEAH box helicase RD09_RS11465 PF04408 Helicase associated domain (HA2) RD09_RS11470 PF00583 Acetyltransferase (GNAT) family RD09_RS11470 PF00696 Amino acid kinase family RD09_RS11475 PF04362 Bacterial Fe(2+) trafficking RD09_RS11480 PF04185 Phosphoesterase family RD09_RS11480 PF05506 Domain of unknown function (DUF756) RD09_RS11485 PF01895 PhoU domain RD09_RS11490 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RD09_RS11495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS11495 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS11495 PF18158 Adaptive response protein AidB N-terminal domain RD09_RS11500 PF02646 RmuC family RD09_RS11510 PF02245 Methylpurine-DNA glycosylase (MPG) RD09_RS11520 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS11525 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS11530 PF00005 ABC transporter RD09_RS11530 PF08402 TOBE domain RD09_RS11535 PF13416 Bacterial extracellular solute-binding protein RD09_RS11555 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS11565 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD09_RS11565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD09_RS11585 PF00285 Citrate synthase, C-terminal domain RD09_RS11590 PF03937 Flavinator of succinate dehydrogenase RD09_RS11595 PF13085 2Fe-2S iron-sulfur cluster binding domain RD09_RS11600 PF02910 Fumarate reductase flavoprotein C-term RD09_RS11600 PF00890 FAD binding domain RD09_RS11605 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD09_RS11610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD09_RS11615 PF00392 Bacterial regulatory proteins, gntR family RD09_RS11615 PF07702 UTRA domain RD09_RS11620 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RD09_RS11620 PF00056 lactate/malate dehydrogenase, NAD binding domain RD09_RS11630 PF00285 Citrate synthase, C-terminal domain RD09_RS11635 PF00694 Aconitase C-terminal domain RD09_RS11635 PF00330 Aconitase family (aconitate hydratase) RD09_RS11640 PF04303 PrpF protein RD09_RS11645 PF03972 MmgE/PrpD family RD09_RS11650 PF03653 Uncharacterised protein family (UPF0093) RD09_RS11655 PF01170 Putative RNA methylase family UPF0020 RD09_RS11655 PF02926 THUMP domain RD09_RS11675 PF16177 Acetyl-coenzyme A synthetase N-terminus RD09_RS11675 PF00501 AMP-binding enzyme RD09_RS11675 PF13193 AMP-binding enzyme C-terminal domain RD09_RS11685 PF01430 Hsp33 protein RD09_RS11710 PF00211 Adenylate and Guanylate cyclase catalytic domain RD09_RS11715 PF04977 Septum formation initiator RD09_RS11720 PF03952 Enolase, N-terminal domain RD09_RS11720 PF00113 Enolase, C-terminal TIM barrel domain RD09_RS11730 PF00793 DAHP synthetase I family RD09_RS11735 PF06418 CTP synthase N-terminus RD09_RS11735 PF00117 Glutamine amidotransferase class-I RD09_RS11745 PF01321 Creatinase/Prolidase N-terminal domain RD09_RS11745 PF00557 Metallopeptidase family M24 RD09_RS11755 PF03576 Peptidase family S58 RD09_RS11760 PF12911 N-terminal TM domain of oligopeptide transport permease C RD09_RS11760 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS11765 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS11770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS11775 PF00005 ABC transporter RD09_RS11775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS11780 PF01112 Asparaginase RD09_RS11790 PF01144 Coenzyme A transferase RD09_RS11810 PF16363 GDP-mannose 4,6 dehydratase RD09_RS11825 PF01212 Beta-eliminating lyase RD09_RS11830 PF00892 EamA-like transporter family RD09_RS11835 PF16177 Acetyl-coenzyme A synthetase N-terminus RD09_RS11835 PF13193 AMP-binding enzyme C-terminal domain RD09_RS11835 PF00501 AMP-binding enzyme RD09_RS11845 PF03928 Haem-degrading RD09_RS11850 PF13193 AMP-binding enzyme C-terminal domain RD09_RS11850 PF16177 Acetyl-coenzyme A synthetase N-terminus RD09_RS11850 PF00501 AMP-binding enzyme RD09_RS11855 PF00877 NlpC/P60 family RD09_RS11870 PF03466 LysR substrate binding domain RD09_RS11870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS11875 PF00171 Aldehyde dehydrogenase family RD09_RS11885 PF03466 LysR substrate binding domain RD09_RS11885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS11895 PF02789 Cytosol aminopeptidase family, N-terminal domain RD09_RS11895 PF00883 Cytosol aminopeptidase family, catalytic domain RD09_RS11900 PF04364 DNA polymerase III chi subunit, HolC RD09_RS11910 PF01027 Inhibitor of apoptosis-promoting Bax1 RD09_RS11915 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS11930 PF00291 Pyridoxal-phosphate dependent enzyme RD09_RS11940 PF02565 Recombination protein O C terminal RD09_RS11940 PF11967 Recombination protein O N terminal RD09_RS11945 PF01926 50S ribosome-binding GTPase RD09_RS11945 PF07650 KH domain RD09_RS11950 PF00035 Double-stranded RNA binding motif RD09_RS11950 PF14622 Ribonuclease-III-like RD09_RS11955 PF10502 Signal peptidase, peptidase S26 RD09_RS11960 PF06421 GTP-binding protein LepA C-terminus RD09_RS11960 PF00679 Elongation factor G C-terminus RD09_RS11960 PF03144 Elongation factor Tu domain 2 RD09_RS11960 PF00009 Elongation factor Tu GTP binding domain RD09_RS11965 PF13180 PDZ domain RD09_RS11980 PF04542 Sigma-70 region 2 RD09_RS11980 PF08281 Sigma-70, region 4 RD09_RS11990 PF00109 Beta-ketoacyl synthase, N-terminal domain RD09_RS11990 PF02801 Beta-ketoacyl synthase, C-terminal domain RD09_RS11995 PF00550 Phosphopantetheine attachment site RD09_RS12005 PF00698 Acyl transferase domain RD09_RS12010 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD09_RS12010 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD09_RS12015 PF02504 Fatty acid synthesis protein RD09_RS12020 PF01783 Ribosomal L32p protein family RD09_RS12025 PF02620 Large ribosomal RNA subunit accumulation protein YceD RD09_RS12030 PF02545 Maf-like protein RD09_RS12040 PF01510 N-acetylmuramoyl-L-alanine amidase RD09_RS12045 PF12805 FUSC-like inner membrane protein yccS RD09_RS12055 PF03883 Peroxide stress protein YaaA RD09_RS12070 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RD09_RS12075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD09_RS12085 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS12090 PF01416 tRNA pseudouridine synthase RD09_RS12100 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD09_RS12100 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD09_RS12105 PF00180 Isocitrate/isopropylmalate dehydrogenase RD09_RS12110 PF00694 Aconitase C-terminal domain RD09_RS12115 PF00330 Aconitase family (aconitate hydratase) RD09_RS12120 PF12849 PBP superfamily domain RD09_RS12125 PF00005 ABC transporter RD09_RS12130 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS12155 PF13247 4Fe-4S dicluster domain RD09_RS12160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RD09_RS12160 PF01568 Molydopterin dinucleotide binding domain RD09_RS12160 PF00384 Molybdopterin oxidoreductase RD09_RS12190 PF10609 NUBPL iron-transfer P-loop NTPase RD09_RS12195 PF12804 MobA-like NTP transferase domain RD09_RS12200 PF03454 MoeA C-terminal region (domain IV) RD09_RS12200 PF00994 Probable molybdopterin binding domain RD09_RS12200 PF03453 MoeA N-terminal region (domain I and II) RD09_RS12205 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RD09_RS12210 PF01435 Peptidase family M48 RD09_RS12215 PF01264 Chorismate synthase RD09_RS12220 PF08448 PAS fold RD09_RS12220 PF00990 Diguanylate cyclase, GGDEF domain RD09_RS12220 PF00563 EAL domain RD09_RS12220 PF08447 PAS fold RD09_RS12235 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS12240 PF08402 TOBE domain RD09_RS12240 PF00005 ABC transporter RD09_RS12245 PF03466 LysR substrate binding domain RD09_RS12245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS12250 PF00300 Histidine phosphatase superfamily (branch 1) RD09_RS12260 PF02142 MGS-like domain RD09_RS12260 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RD09_RS12260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD09_RS12265 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RD09_RS12265 PF00117 Glutamine amidotransferase class-I RD09_RS12270 PF00923 Transaldolase/Fructose-6-phosphate aldolase RD09_RS12295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD09_RS12295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD09_RS12300 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS12305 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS12305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS12305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS12310 PF03658 RnfH family Ubiquitin RD09_RS12315 PF03364 Polyketide cyclase / dehydrase and lipid transport RD09_RS12325 PF01668 SmpB protein RD09_RS12330 PF08448 PAS fold RD09_RS12330 PF00990 Diguanylate cyclase, GGDEF domain RD09_RS12335 PF16200 C-terminal region of band_7 RD09_RS12335 PF01145 SPFH domain / Band 7 family RD09_RS12350 PF00117 Glutamine amidotransferase class-I RD09_RS12350 PF00958 GMP synthase C terminal domain RD09_RS12355 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RD09_RS12355 PF02896 PEP-utilising enzyme, TIM barrel domain RD09_RS12355 PF00391 PEP-utilising enzyme, mobile domain RD09_RS12360 PF03618 Kinase/pyrophosphorylase RD09_RS12365 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD09_RS12365 PF00588 SpoU rRNA Methylase family RD09_RS12370 PF01351 Ribonuclease HII RD09_RS12375 PF02684 Lipid-A-disaccharide synthetase RD09_RS12380 PF00132 Bacterial transferase hexapeptide (six repeats) RD09_RS12380 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RD09_RS12385 PF07977 FabA-like domain RD09_RS12390 PF00132 Bacterial transferase hexapeptide (six repeats) RD09_RS12390 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RD09_RS12395 PF03938 Outer membrane protein (OmpH-like) RD09_RS12400 PF07244 Surface antigen variable number repeat RD09_RS12400 PF01103 Surface antigen RD09_RS12405 PF02163 Peptidase family M50 RD09_RS12405 PF17820 PDZ domain RD09_RS12410 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RD09_RS12410 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RD09_RS12410 PF13288 DXP reductoisomerase C-terminal domain RD09_RS12420 PF01255 Putative undecaprenyl diphosphate synthase RD09_RS12425 PF01765 Ribosome recycling factor RD09_RS12430 PF00696 Amino acid kinase family RD09_RS12435 PF00889 Elongation factor TS RD09_RS12440 PF00318 Ribosomal protein S2 RD09_RS12445 PF00557 Metallopeptidase family M24 RD09_RS12450 PF08335 GlnD PII-uridylyltransferase RD09_RS12450 PF01966 HD domain RD09_RS12450 PF01909 Nucleotidyltransferase domain RD09_RS12465 PF00156 Phosphoribosyl transferase domain RD09_RS12480 PF08245 Mur ligase middle domain RD09_RS12480 PF02875 Mur ligase family, glutamate ligase domain RD09_RS12490 PF07195 Flagellar hook-associated protein 2 C-terminus RD09_RS12490 PF02465 Flagellar hook-associated protein 2 N-terminus RD09_RS12490 PF07196 Flagellin hook IN motif RD09_RS12495 PF02561 Flagellar protein FliS RD09_RS12515 PF01312 FlhB HrpN YscU SpaS Family RD09_RS12525 PF02049 Flagellar hook-basal body complex protein FliE RD09_RS12530 PF08345 Flagellar M-ring protein C-terminal RD09_RS12530 PF01514 Secretory protein of YscJ/FliF family RD09_RS12535 PF01706 FliG C-terminal domain RD09_RS12535 PF14841 FliG middle domain RD09_RS12535 PF14842 FliG N-terminal domain RD09_RS12540 PF02108 Flagellar assembly protein FliH RD09_RS12545 PF18269 T3SS EscN ATPase C-terminal domain RD09_RS12545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD09_RS12570 PF03748 Flagellar basal body-associated protein FliL RD09_RS12575 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD09_RS12575 PF02154 Flagellar motor switch protein FliM RD09_RS12580 PF16973 Flagellar motor switch protein FliN N-terminal RD09_RS12580 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD09_RS12585 PF04347 Flagellar biosynthesis protein, FliO RD09_RS12590 PF00813 FliP family RD09_RS12595 PF01313 Bacterial export proteins, family 3 RD09_RS12600 PF01311 Bacterial export proteins, family 1 RD09_RS12610 PF08447 PAS fold RD09_RS12610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD09_RS12615 PF00672 HAMP domain RD09_RS12615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD09_RS12615 PF02203 Tar ligand binding domain homologue RD09_RS12620 PF00672 HAMP domain RD09_RS12620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD09_RS12620 PF02203 Tar ligand binding domain homologue RD09_RS12625 PF00669 Bacterial flagellin N-terminal helical region RD09_RS12630 PF00460 Flagella basal body rod protein RD09_RS12630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD09_RS12635 PF10135 Rod binding protein RD09_RS12635 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RD09_RS12640 PF02119 Flagellar P-ring protein RD09_RS12645 PF02107 Flagellar L-ring protein RD09_RS12650 PF00460 Flagella basal body rod protein RD09_RS12650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD09_RS12655 PF00460 Flagella basal body rod protein RD09_RS12655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD09_RS12660 PF00460 Flagella basal body rod protein RD09_RS12660 PF07559 Flagellar basal body protein FlaE RD09_RS12660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD09_RS12665 PF13860 FlgD Ig-like domain RD09_RS12665 PF03963 Flagellar hook capping protein - N-terminal region RD09_RS12665 PF13861 FlgD Tudor-like domain RD09_RS12670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD09_RS12670 PF00460 Flagella basal body rod protein RD09_RS12675 PF00460 Flagella basal body rod protein RD09_RS12685 PF04316 Anti-sigma-28 factor, FlgM RD09_RS12695 PF00448 SRP54-type protein, GTPase domain RD09_RS12705 PF01312 FlhB HrpN YscU SpaS Family RD09_RS12715 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS12720 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS12725 PF00005 ABC transporter RD09_RS12735 PF08546 Ketopantoate reductase PanE/ApbA C terminal RD09_RS12735 PF02558 Ketopantoate reductase PanE/ApbA RD09_RS12740 PF13378 Enolase C-terminal domain-like RD09_RS12745 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS12755 PF00694 Aconitase C-terminal domain RD09_RS12760 PF00356 Bacterial regulatory proteins, lacI family RD09_RS12765 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS12770 PF02515 CoA-transferase family III RD09_RS12780 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS12785 PF13607 Succinyl-CoA ligase like flavodoxin domain RD09_RS12785 PF13380 CoA binding domain RD09_RS12790 PF00392 Bacterial regulatory proteins, gntR family RD09_RS12790 PF07729 FCD domain RD09_RS12795 PF03328 HpcH/HpaI aldolase/citrate lyase family RD09_RS12805 PF03466 LysR substrate binding domain RD09_RS12805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS12815 PF12951 Passenger-associated-transport-repeat RD09_RS12825 PF03551 Transcriptional regulator PadR-like family RD09_RS12830 PF03372 Endonuclease/Exonuclease/phosphatase family RD09_RS12835 PF13091 PLD-like domain RD09_RS12850 PF03706 Lysylphosphatidylglycerol synthase TM region RD09_RS12880 PF00128 Alpha amylase, catalytic domain RD09_RS12880 PF11896 Domain of unknown function (DUF3416) RD09_RS12885 PF00128 Alpha amylase, catalytic domain RD09_RS12885 PF16657 Maltogenic Amylase, C-terminal domain RD09_RS12890 PF02806 Alpha amylase, C-terminal all-beta domain RD09_RS12890 PF00128 Alpha amylase, catalytic domain RD09_RS12890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD09_RS12895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD09_RS12895 PF00128 Alpha amylase, catalytic domain RD09_RS12900 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD09_RS12900 PF00128 Alpha amylase, catalytic domain RD09_RS12900 PF11941 Domain of unknown function (DUF3459) RD09_RS12910 PF02446 4-alpha-glucanotransferase RD09_RS12925 PF08543 Phosphomethylpyrimidine kinase RD09_RS12930 PF01168 Alanine racemase, N-terminal domain RD09_RS12935 PF00155 Aminotransferase class I and II RD09_RS12935 PF00392 Bacterial regulatory proteins, gntR family RD09_RS12950 PF00582 Universal stress protein family RD09_RS12955 PF00248 Aldo/keto reductase family RD09_RS12965 PF01447 Thermolysin metallopeptidase, catalytic domain RD09_RS12965 PF02868 Thermolysin metallopeptidase, alpha-helical domain RD09_RS12965 PF16485 Protealysin propeptide RD09_RS12970 PF07681 DoxX RD09_RS12990 PF00578 AhpC/TSA family RD09_RS12995 PF03960 ArsC family RD09_RS13000 PF02515 CoA-transferase family III RD09_RS13020 PF00255 Glutathione peroxidase RD09_RS13025 PF02798 Glutathione S-transferase, N-terminal domain RD09_RS13025 PF00043 Glutathione S-transferase, C-terminal domain RD09_RS13040 PF03099 Biotin/lipoate A/B protein ligase family RD09_RS13040 PF10437 Bacterial lipoate protein ligase C-terminus RD09_RS13055 PF02666 Phosphatidylserine decarboxylase RD09_RS13060 PF01070 FMN-dependent dehydrogenase RD09_RS13065 PF03180 NLPA lipoprotein RD09_RS13070 PF08808 RES domain RD09_RS13080 PF04241 Protein of unknown function (DUF423) RD09_RS13100 PF13458 Periplasmic binding protein RD09_RS13105 PF00005 ABC transporter RD09_RS13105 PF17912 MalK OB fold domain RD09_RS13110 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS13115 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS13120 PF13416 Bacterial extracellular solute-binding protein RD09_RS13125 PF14748 Pyrroline-5-carboxylate reductase dimerisation RD09_RS13125 PF03807 NADP oxidoreductase coenzyme F420-dependent RD09_RS13130 PF02592 Putative vitamin uptake transporter RD09_RS13140 PF13458 Periplasmic binding protein RD09_RS13145 PF02653 Branched-chain amino acid transport system / permease component RD09_RS13150 PF02653 Branched-chain amino acid transport system / permease component RD09_RS13150 PF11862 Domain of unknown function (DUF3382) RD09_RS13155 PF00005 ABC transporter RD09_RS13155 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD09_RS13160 PF00005 ABC transporter RD09_RS13165 PF01177 Asp/Glu/Hydantoin racemase RD09_RS13180 PF00892 EamA-like transporter family RD09_RS13190 PF04235 Protein of unknown function (DUF418) RD09_RS13195 PF00521 DNA gyrase/topoisomerase IV, subunit A RD09_RS13205 PF00204 DNA gyrase B RD09_RS13205 PF00986 DNA gyrase B subunit, carboxyl terminus RD09_RS13205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS13205 PF01751 Toprim domain RD09_RS13210 PF00085 Thioredoxin RD09_RS13215 PF07497 Rho termination factor, RNA-binding domain RD09_RS13215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD09_RS13215 PF07498 Rho termination factor, N-terminal domain RD09_RS13225 PF03710 Glutamate-ammonia ligase adenylyltransferase RD09_RS13225 PF08335 GlnD PII-uridylyltransferase RD09_RS13230 PF02677 Epoxyqueuosine reductase QueH RD09_RS13235 PF03313 Serine dehydratase alpha chain RD09_RS13235 PF03315 Serine dehydratase beta chain RD09_RS13240 PF02690 Na+/Pi-cotransporter RD09_RS13245 PF01738 Dienelactone hydrolase family RD09_RS13255 PF00476 DNA polymerase family A RD09_RS13255 PF01612 3'-5' exonuclease RD09_RS13255 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RD09_RS13255 PF01367 5'-3' exonuclease, C-terminal SAM fold RD09_RS13260 PF03641 Possible lysine decarboxylase RD09_RS13275 PF03144 Elongation factor Tu domain 2 RD09_RS13275 PF00009 Elongation factor Tu GTP binding domain RD09_RS13275 PF00679 Elongation factor G C-terminus RD09_RS13280 PF16198 tRNA pseudouridylate synthase B C-terminal domain RD09_RS13280 PF01509 TruB family pseudouridylate synthase (N terminal domain) RD09_RS13285 PF02033 Ribosome-binding factor A RD09_RS13290 PF04760 Translation initiation factor IF-2, N-terminal region RD09_RS13290 PF11987 Translation-initiation factor 2 RD09_RS13290 PF00009 Elongation factor Tu GTP binding domain RD09_RS13290 PF08364 Bacterial translation initiation factor IF-2 associated region RD09_RS13295 PF13184 NusA-like KH domain RD09_RS13295 PF08529 NusA N-terminal domain RD09_RS13300 PF17384 RimP C-terminal SH3 domain RD09_RS13300 PF02576 RimP N-terminal domain RD09_RS13305 PF01479 S4 domain RD09_RS13305 PF00849 RNA pseudouridylate synthase RD09_RS13310 PF04079 Segregation and condensation complex subunit ScpB RD09_RS13320 PF03466 LysR substrate binding domain RD09_RS13320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS13325 PF00881 Nitroreductase family RD09_RS13330 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD09_RS13330 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD09_RS13350 PF02798 Glutathione S-transferase, N-terminal domain RD09_RS13350 PF14497 Glutathione S-transferase, C-terminal domain RD09_RS13355 PF02401 LytB protein RD09_RS13360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD09_RS13365 PF04002 RadC-like JAB domain RD09_RS13370 PF04199 Putative cyclase RD09_RS13375 PF03301 Tryptophan 2,3-dioxygenase RD09_RS13380 PF01197 Ribosomal protein L31 RD09_RS13390 PF01554 MatE RD09_RS13405 PF18073 Rubredoxin metal binding domain RD09_RS13410 PF00092 von Willebrand factor type A domain RD09_RS13410 PF12450 von Willebrand factor RD09_RS13410 PF12034 Domain of unknown function (DUF3520) RD09_RS13415 PF04542 Sigma-70 region 2 RD09_RS13415 PF04545 Sigma-70, region 4 RD09_RS13435 PF01168 Alanine racemase, N-terminal domain RD09_RS13435 PF00842 Alanine racemase, C-terminal domain RD09_RS13450 PF01593 Flavin containing amine oxidoreductase RD09_RS13450 PF01593 Flavin containing amine oxidoreductase RD09_RS13455 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD09_RS13465 PF01061 ABC-2 type transporter RD09_RS13470 PF00005 ABC transporter RD09_RS13490 PF02424 ApbE family RD09_RS13495 PF00667 FAD binding domain RD09_RS13495 PF00258 Flavodoxin RD09_RS13495 PF00175 Oxidoreductase NAD-binding domain RD09_RS13505 PF07969 Amidohydrolase family RD09_RS13510 PF03466 LysR substrate binding domain RD09_RS13510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS13520 PF09370 Phosphoenolpyruvate hydrolase-like RD09_RS13535 PF03797 Autotransporter beta-domain RD09_RS13535 PF03212 Pertactin RD09_RS13540 PF03212 Pertactin RD09_RS13540 PF03797 Autotransporter beta-domain RD09_RS13550 PF17871 AAA lid domain RD09_RS13550 PF02861 Clp amino terminal domain, pathogenicity island component RD09_RS13550 PF00004 ATPase family associated with various cellular activities (AAA) RD09_RS13550 PF07724 AAA domain (Cdc48 subfamily) RD09_RS13550 PF10431 C-terminal, D2-small domain, of ClpB protein RD09_RS13555 PF13545 Crp-like helix-turn-helix domain RD09_RS13555 PF00027 Cyclic nucleotide-binding domain RD09_RS13570 PF00293 NUDIX domain RD09_RS13575 PF12843 Putative quorum-sensing-regulated virulence factor RD09_RS13585 PF04542 Sigma-70 region 2 RD09_RS13585 PF08281 Sigma-70, region 4 RD09_RS13585 PF12680 SnoaL-like domain RD09_RS13590 PF02627 Carboxymuconolactone decarboxylase family RD09_RS13620 PF00155 Aminotransferase class I and II RD09_RS13625 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS13630 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS13635 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS13640 PF00005 ABC transporter RD09_RS13660 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD09_RS13685 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS13690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD09_RS13690 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD09_RS13695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS13695 PF03466 LysR substrate binding domain RD09_RS13705 PF17676 LD-carboxypeptidase C-terminal domain RD09_RS13705 PF02016 LD-carboxypeptidase N-terminal domain RD09_RS13720 PF07690 Major Facilitator Superfamily RD09_RS13730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS13730 PF03466 LysR substrate binding domain RD09_RS13735 PF13378 Enolase C-terminal domain-like RD09_RS13735 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RD09_RS13760 PF02567 Phenazine biosynthesis-like protein RD09_RS13770 PF03239 Iron permease FTR1 family RD09_RS13780 PF10634 Fe2+ transport protein RD09_RS13785 PF07879 PHB/PHA accumulation regulator DNA-binding domain RD09_RS13785 PF05233 PHB accumulation regulatory domain RD09_RS13790 PF00106 short chain dehydrogenase RD09_RS13795 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RD09_RS13800 PF02578 Multi-copper polyphenol oxidoreductase laccase RD09_RS13805 PF00849 RNA pseudouridylate synthase RD09_RS13805 PF01479 S4 domain RD09_RS13810 PF13525 Outer membrane lipoprotein RD09_RS13815 PF13307 Helicase C-terminal domain RD09_RS13815 PF04851 Type III restriction enzyme, res subunit RD09_RS13820 PF09371 Tex-like protein N-terminal domain RD09_RS13820 PF17674 HHH domain RD09_RS13820 PF00575 S1 RNA binding domain RD09_RS13820 PF16921 Tex protein YqgF-like domain RD09_RS13825 PF00579 tRNA synthetases class I (W and Y) RD09_RS13845 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS13855 PF03466 LysR substrate binding domain RD09_RS13855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS13865 PF03969 AFG1-like ATPase RD09_RS13870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD09_RS13870 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS13875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD09_RS13875 PF00364 Biotin-requiring enzyme RD09_RS13875 PF02817 e3 binding domain RD09_RS13880 PF02779 Transketolase, pyrimidine binding domain RD09_RS13880 PF16078 2-oxoglutarate dehydrogenase N-terminus RD09_RS13880 PF00676 Dehydrogenase E1 component RD09_RS13880 PF16870 2-oxoglutarate dehydrogenase C-terminal RD09_RS13885 PF03169 OPT oligopeptide transporter protein RD09_RS13890 PF03169 OPT oligopeptide transporter protein RD09_RS13895 PF01037 Lrp/AsnC ligand binding domain RD09_RS13900 PF17831 Pyruvate dehydrogenase E1 component middle domain RD09_RS13900 PF00456 Transketolase, thiamine diphosphate binding domain RD09_RS13905 PF03949 Malic enzyme, NAD binding domain RD09_RS13905 PF01515 Phosphate acetyl/butaryl transferase RD09_RS13905 PF00390 Malic enzyme, N-terminal domain RD09_RS13910 PF16970 Type-1 fimbrial protein, A RD09_RS13920 PF01272 Transcription elongation factor, GreA/GreB, C-term RD09_RS13920 PF03449 Transcription elongation factor, N-terminal RD09_RS13925 PF02811 PHP domain RD09_RS13960 PF01026 TatD related DNase RD09_RS13965 PF00005 ABC transporter RD09_RS13970 PF02687 FtsX-like permease family RD09_RS13970 PF12704 MacB-like periplasmic core domain RD09_RS13980 PF17768 RecJ OB domain RD09_RS13980 PF01368 DHH family RD09_RS13980 PF02272 DHHA1 domain RD09_RS13985 PF00472 RF-1 domain RD09_RS13985 PF03462 PCRF domain RD09_RS13990 PF00106 short chain dehydrogenase RD09_RS13995 PF00152 tRNA synthetases class II (D, K and N) RD09_RS13995 PF01336 OB-fold nucleic acid binding domain RD09_RS14005 PF17932 Tetracyclin repressor-like, C-terminal domain RD09_RS14005 PF00440 Bacterial regulatory proteins, tetR family RD09_RS14010 PF00501 AMP-binding enzyme RD09_RS14015 PF00005 ABC transporter RD09_RS14035 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD09_RS14035 PF00005 ABC transporter RD09_RS14045 PF07689 KaiB domain RD09_RS14045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS14045 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS14050 PF00486 Transcriptional regulatory protein, C terminal RD09_RS14050 PF00072 Response regulator receiver domain RD09_RS14055 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RD09_RS14065 PF03631 Virulence factor BrkB RD09_RS14080 PF01207 Dihydrouridine synthase (Dus) RD09_RS14085 PF01636 Phosphotransferase enzyme family RD09_RS14105 PF01985 CRS1 / YhbY (CRM) domain RD09_RS14110 PF01728 FtsJ-like methyltransferase RD09_RS14115 PF17862 AAA+ lid domain RD09_RS14115 PF00004 ATPase family associated with various cellular activities (AAA) RD09_RS14115 PF01434 Peptidase family M41 RD09_RS14115 PF06480 FtsH Extracellular RD09_RS14120 PF00809 Pterin binding enzyme RD09_RS14125 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD09_RS14125 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD09_RS14125 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD09_RS14125 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD09_RS14135 PF02541 Ppx/GppA phosphatase family RD09_RS14140 PF13089 Polyphosphate kinase N-terminal domain RD09_RS14140 PF02503 Polyphosphate kinase middle domain RD09_RS14140 PF17941 Polyphosphate kinase C-terminal domain 1 RD09_RS14140 PF13090 Polyphosphate kinase C-terminal domain 2 RD09_RS14145 PF12849 PBP superfamily domain RD09_RS14150 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS14155 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS14160 PF00005 ABC transporter RD09_RS14175 PF01337 Barstar (barnase inhibitor) RD09_RS14185 PF00390 Malic enzyme, N-terminal domain RD09_RS14185 PF03949 Malic enzyme, NAD binding domain RD09_RS14185 PF01515 Phosphate acetyl/butaryl transferase RD09_RS14195 PF00155 Aminotransferase class I and II RD09_RS14200 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RD09_RS14200 PF01464 Transglycosylase SLT domain RD09_RS14205 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RD09_RS14230 PF10414 Sirohaem synthase dimerisation region RD09_RS14230 PF14824 Sirohaem biosynthesis protein central RD09_RS14230 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD09_RS14235 PF03212 Pertactin RD09_RS14235 PF03797 Autotransporter beta-domain RD09_RS14250 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RD09_RS14255 PF02547 Queuosine biosynthesis protein RD09_RS14260 PF01702 Queuine tRNA-ribosyltransferase RD09_RS14265 PF02699 Preprotein translocase subunit RD09_RS14270 PF07549 SecD/SecF GG Motif RD09_RS14270 PF02355 Protein export membrane protein RD09_RS14270 PF13721 SecD export protein N-terminal TM region RD09_RS14275 PF07549 SecD/SecF GG Motif RD09_RS14275 PF02355 Protein export membrane protein RD09_RS14290 PF01938 TRAM domain RD09_RS14290 PF00919 Uncharacterized protein family UPF0004 RD09_RS14290 PF04055 Radical SAM superfamily RD09_RS14295 PF02562 PhoH-like protein RD09_RS14300 PF02130 Uncharacterized protein family UPF0054 RD09_RS14305 PF03471 Transporter associated domain RD09_RS14305 PF00571 CBS domain RD09_RS14310 PF00795 Carbon-nitrogen hydrolase RD09_RS14315 PF00248 Aldo/keto reductase family RD09_RS14340 PF04344 Chemotaxis phosphatase, CheZ RD09_RS14345 PF00072 Response regulator receiver domain RD09_RS14350 PF01339 CheB methylesterase RD09_RS14350 PF00072 Response regulator receiver domain RD09_RS14360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD09_RS14360 PF00672 HAMP domain RD09_RS14360 PF02203 Tar ligand binding domain homologue RD09_RS14365 PF01584 CheW-like domain RD09_RS14370 PF09078 CheY binding RD09_RS14370 PF02895 Signal transducing histidine kinase, homodimeric domain RD09_RS14370 PF01584 CheW-like domain RD09_RS14370 PF01627 Hpt domain RD09_RS14370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS14375 PF00072 Response regulator receiver domain RD09_RS14380 PF13677 Membrane MotB of proton-channel complex MotA/MotB RD09_RS14380 PF00691 OmpA family RD09_RS14385 PF01618 MotA/TolQ/ExbB proton channel family RD09_RS14390 PF05280 Flagellar transcriptional activator (FlhC) RD09_RS14395 PF05247 Flagellar transcriptional activator (FlhD) RD09_RS14400 PF04545 Sigma-70, region 4 RD09_RS14400 PF04539 Sigma-70 region 3 RD09_RS14400 PF04542 Sigma-70 region 2 RD09_RS14410 PF01176 Translation initiation factor 1A / IF-1 RD09_RS14420 PF01476 LysM domain RD09_RS14420 PF01551 Peptidase family M23 RD09_RS14420 PF08525 Opacity-associated protein A N-terminal motif RD09_RS14430 PF00994 Probable molybdopterin binding domain RD09_RS14440 PF03591 AzlC protein RD09_RS14450 PF01556 DnaJ C terminal domain RD09_RS14450 PF00226 DnaJ domain RD09_RS14470 PF14834 Glutathione S-transferase, C-terminal domain RD09_RS14470 PF02798 Glutathione S-transferase, N-terminal domain RD09_RS14475 PF11339 Protein of unknown function (DUF3141) RD09_RS14480 PF01515 Phosphate acetyl/butaryl transferase RD09_RS14485 PF00871 Acetokinase family RD09_RS14495 PF00162 Phosphoglycerate kinase RD09_RS14500 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RD09_RS14500 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD09_RS14505 PF02780 Transketolase, C-terminal domain RD09_RS14505 PF00456 Transketolase, thiamine diphosphate binding domain RD09_RS14505 PF02779 Transketolase, pyrimidine binding domain RD09_RS14510 PF04452 RNA methyltransferase RD09_RS14525 PF00700 Bacterial flagellin C-terminal helical region RD09_RS14525 PF00669 Bacterial flagellin N-terminal helical region RD09_RS14530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD09_RS14530 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS14535 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD09_RS14535 PF00364 Biotin-requiring enzyme RD09_RS14535 PF02817 e3 binding domain RD09_RS14540 PF17831 Pyruvate dehydrogenase E1 component middle domain RD09_RS14540 PF00456 Transketolase, thiamine diphosphate binding domain RD09_RS14545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS14545 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS14545 PF00989 PAS fold RD09_RS14550 PF00196 Bacterial regulatory proteins, luxR family RD09_RS14550 PF00072 Response regulator receiver domain RD09_RS14555 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD09_RS14555 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD09_RS14560 PF01432 Peptidase family M3 RD09_RS14565 PF02630 SCO1/SenC RD09_RS14575 PF02321 Outer membrane efflux protein RD09_RS14580 PF00873 AcrB/AcrD/AcrF family RD09_RS14585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD09_RS14585 PF00529 HlyD membrane-fusion protein of T1SS RD09_RS14590 PF03466 LysR substrate binding domain RD09_RS14590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS14595 PF00849 RNA pseudouridylate synthase RD09_RS14595 PF01479 S4 domain RD09_RS14600 PF04345 Chorismate lyase RD09_RS14605 PF07690 Major Facilitator Superfamily RD09_RS14615 PF00248 Aldo/keto reductase family RD09_RS14625 PF00293 NUDIX domain RD09_RS14630 PF01245 Ribosomal protein L19 RD09_RS14645 PF04055 Radical SAM superfamily RD09_RS14655 PF01507 Phosphoadenosine phosphosulfate reductase family RD09_RS14660 PF01507 Phosphoadenosine phosphosulfate reductase family RD09_RS14665 PF12857 TOBE-like domain RD09_RS14665 PF00005 ABC transporter RD09_RS14665 PF17850 CysA C-terminal regulatory domain RD09_RS14670 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS14675 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS14690 PF00578 AhpC/TSA family RD09_RS14690 PF10417 C-terminal domain of 1-Cys peroxiredoxin RD09_RS14695 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD09_RS14695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS14695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS14695 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS14700 PF01012 Electron transfer flavoprotein domain RD09_RS14700 PF00766 Electron transfer flavoprotein FAD-binding domain RD09_RS14705 PF01012 Electron transfer flavoprotein domain RD09_RS14710 PF00850 Histone deacetylase domain RD09_RS14715 PF13406 Transglycosylase SLT domain RD09_RS14720 PF00291 Pyridoxal-phosphate dependent enzyme RD09_RS14730 PF10531 SLBB domain RD09_RS14735 PF01370 NAD dependent epimerase/dehydratase family RD09_RS14740 PF00294 pfkB family carbohydrate kinase RD09_RS14745 PF18073 Rubredoxin metal binding domain RD09_RS14755 PF00216 Bacterial DNA-binding protein RD09_RS14760 PF00575 S1 RNA binding domain RD09_RS14765 PF02224 Cytidylate kinase RD09_RS14770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD09_RS14775 PF02153 Prephenate dehydrogenase RD09_RS14780 PF01817 Chorismate mutase type II RD09_RS14780 PF00800 Prephenate dehydratase RD09_RS14780 PF01842 ACT domain RD09_RS14785 PF00266 Aminotransferase class-V RD09_RS14790 PF00521 DNA gyrase/topoisomerase IV, subunit A RD09_RS14790 PF03989 DNA gyrase C-terminal domain, beta-propeller RD09_RS14795 PF00691 OmpA family RD09_RS14805 PF13419 Haloacid dehalogenase-like hydrolase RD09_RS14810 PF07690 Major Facilitator Superfamily RD09_RS14835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS14835 PF03466 LysR substrate binding domain RD09_RS14840 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS14850 PF00817 impB/mucB/samB family RD09_RS14850 PF11799 impB/mucB/samB family C-terminal domain RD09_RS14850 PF11798 IMS family HHH motif RD09_RS14860 PF00326 Prolyl oligopeptidase family RD09_RS14865 PF17092 Penicillin-binding protein OB-like domain RD09_RS14865 PF00905 Penicillin binding protein transpeptidase domain RD09_RS14865 PF00912 Transglycosylase RD09_RS14870 PF00149 Calcineurin-like phosphoesterase RD09_RS14885 PF00248 Aldo/keto reductase family RD09_RS14890 PF00248 Aldo/keto reductase family RD09_RS14895 PF00005 ABC transporter RD09_RS14895 PF00664 ABC transporter transmembrane region RD09_RS14940 PF01039 Carboxyl transferase domain RD09_RS14945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD09_RS14945 PF00289 Biotin carboxylase, N-terminal domain RD09_RS14945 PF02785 Biotin carboxylase C-terminal domain RD09_RS14950 PF00392 Bacterial regulatory proteins, gntR family RD09_RS14950 PF07702 UTRA domain RD09_RS14970 PF00364 Biotin-requiring enzyme RD09_RS14970 PF00682 HMGL-like RD09_RS14970 PF02436 Conserved carboxylase domain RD09_RS14975 PF00364 Biotin-requiring enzyme RD09_RS14985 PF01966 HD domain RD09_RS15005 PF07317 Flagellar regulator YcgR RD09_RS15005 PF07238 PilZ domain RD09_RS15020 PF05724 Thiopurine S-methyltransferase (TPMT) RD09_RS15025 PF00005 ABC transporter RD09_RS15025 PF00664 ABC transporter transmembrane region RD09_RS15040 PF00205 Thiamine pyrophosphate enzyme, central domain RD09_RS15040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD09_RS15040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD09_RS15045 PF10369 Small subunit of acetolactate synthase RD09_RS15050 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RD09_RS15050 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RD09_RS15055 PF01066 CDP-alcohol phosphatidyltransferase RD09_RS15065 PF00312 Ribosomal protein S15 RD09_RS15070 PF00575 S1 RNA binding domain RD09_RS15070 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RD09_RS15070 PF01138 3' exoribonuclease family, domain 1 RD09_RS15070 PF00013 KH domain RD09_RS15070 PF03725 3' exoribonuclease family, domain 2 RD09_RS15085 PF00291 Pyridoxal-phosphate dependent enzyme RD09_RS15085 PF13291 ACT domain RD09_RS15100 PF16197 Ketoacyl-synthetase C-terminal extension RD09_RS15100 PF08990 Erythronolide synthase docking RD09_RS15100 PF00109 Beta-ketoacyl synthase, N-terminal domain RD09_RS15100 PF08240 Alcohol dehydrogenase GroES-like domain RD09_RS15100 PF14765 Polyketide synthase dehydratase RD09_RS15100 PF00698 Acyl transferase domain RD09_RS15100 PF08659 KR domain RD09_RS15100 PF02801 Beta-ketoacyl synthase, C-terminal domain RD09_RS15100 PF00550 Phosphopantetheine attachment site RD09_RS15105 PF00121 Triosephosphate isomerase RD09_RS15110 PF03840 Preprotein translocase SecG subunit RD09_RS15120 PF02028 BCCT, betaine/carnitine/choline family transporter RD09_RS15130 PF05034 Methylaspartate ammonia-lyase N-terminus RD09_RS15130 PF07476 Methylaspartate ammonia-lyase C-terminus RD09_RS15135 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS15150 PF00206 Lyase RD09_RS15150 PF14698 Argininosuccinate lyase C-terminal RD09_RS15155 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS15170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS15170 PF03466 LysR substrate binding domain RD09_RS15175 PF01053 Cys/Met metabolism PLP-dependent enzyme RD09_RS15180 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD09_RS15195 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS15200 PF01266 FAD dependent oxidoreductase RD09_RS15210 PF01968 Hydantoinase/oxoprolinase RD09_RS15210 PF05378 Hydantoinase/oxoprolinase N-terminal region RD09_RS15220 PF00127 Copper binding proteins, plastocyanin/azurin family RD09_RS15230 PF02321 Outer membrane efflux protein RD09_RS15235 PF00873 AcrB/AcrD/AcrF family RD09_RS15240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD09_RS15245 PF01638 HxlR-like helix-turn-helix RD09_RS15255 PF02028 BCCT, betaine/carnitine/choline family transporter RD09_RS15260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS15260 PF03466 LysR substrate binding domain RD09_RS15265 PF00781 Diacylglycerol kinase catalytic domain RD09_RS15275 PF01569 PAP2 superfamily RD09_RS15300 PF13609 Gram-negative porin RD09_RS15305 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RD09_RS15310 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RD09_RS15315 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RD09_RS15320 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RD09_RS15330 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RD09_RS15330 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RD09_RS15330 PF10531 SLBB domain RD09_RS15335 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RD09_RS15335 PF00384 Molybdopterin oxidoreductase RD09_RS15335 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RD09_RS15340 PF00146 NADH dehydrogenase RD09_RS15345 PF12838 4Fe-4S dicluster domain RD09_RS15350 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RD09_RS15355 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD09_RS15360 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD09_RS15360 PF00361 Proton-conducting membrane transporter RD09_RS15365 PF00361 Proton-conducting membrane transporter RD09_RS15365 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus RD09_RS15370 PF00361 Proton-conducting membrane transporter RD09_RS15380 PF00593 TonB dependent receptor RD09_RS15380 PF07715 TonB-dependent Receptor Plug Domain RD09_RS15385 PF07715 TonB-dependent Receptor Plug Domain RD09_RS15385 PF00593 TonB dependent receptor RD09_RS15400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD09_RS15400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD09_RS15400 PF00205 Thiamine pyrophosphate enzyme, central domain RD09_RS15405 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS15410 PF03466 LysR substrate binding domain RD09_RS15410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS15420 PF00270 DEAD/DEAH box helicase RD09_RS15420 PF00271 Helicase conserved C-terminal domain RD09_RS15420 PF03461 TRCF domain RD09_RS15420 PF17757 UvrB interaction domain RD09_RS15420 PF02559 CarD-like/TRCF domain RD09_RS15425 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RD09_RS15430 PF02542 YgbB family RD09_RS15440 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RD09_RS15445 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RD09_RS15445 PF11940 Domain of unknown function (DUF3458) Ig-like fold RD09_RS15445 PF01433 Peptidase family M1 domain RD09_RS15465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD09_RS15465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD09_RS15465 PF00205 Thiamine pyrophosphate enzyme, central domain RD09_RS15475 PF09084 NMT1/THI5 like RD09_RS15480 PF00005 ABC transporter RD09_RS15485 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS15495 PF13193 AMP-binding enzyme C-terminal domain RD09_RS15495 PF00501 AMP-binding enzyme RD09_RS15500 PF00107 Zinc-binding dehydrogenase RD09_RS15500 PF08240 Alcohol dehydrogenase GroES-like domain RD09_RS15505 PF00392 Bacterial regulatory proteins, gntR family RD09_RS15505 PF07729 FCD domain RD09_RS15515 PF00392 Bacterial regulatory proteins, gntR family RD09_RS15515 PF07729 FCD domain RD09_RS15520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD09_RS15520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD09_RS15520 PF00205 Thiamine pyrophosphate enzyme, central domain RD09_RS15540 PF01063 Amino-transferase class IV RD09_RS15545 PF00005 ABC transporter RD09_RS15550 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS15560 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS15565 PF03466 LysR substrate binding domain RD09_RS15565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS15570 PF02321 Outer membrane efflux protein RD09_RS15575 PF13533 Biotin-lipoyl like RD09_RS15580 PF03412 Peptidase C39 family RD09_RS15580 PF00664 ABC transporter transmembrane region RD09_RS15580 PF00005 ABC transporter RD09_RS15585 PF03497 Anthrax toxin LF subunit RD09_RS15585 PF02382 N-terminal domain in RTX protein RD09_RS15585 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RD09_RS15595 PF02794 RTX toxin acyltransferase family RD09_RS15600 PF00171 Aldehyde dehydrogenase family RD09_RS15610 PF01266 FAD dependent oxidoreductase RD09_RS15615 PF02538 Hydantoinase B/oxoprolinase RD09_RS15620 PF01968 Hydantoinase/oxoprolinase RD09_RS15620 PF05378 Hydantoinase/oxoprolinase N-terminal region RD09_RS15625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS15625 PF03466 LysR substrate binding domain RD09_RS15635 PF00348 Polyprenyl synthetase RD09_RS15645 PF00829 Ribosomal prokaryotic L21 protein RD09_RS15650 PF01016 Ribosomal L27 protein RD09_RS15655 PF01018 GTP1/OBG RD09_RS15655 PF01926 50S ribosome-binding GTPase RD09_RS15660 PF00696 Amino acid kinase family RD09_RS15660 PF01472 PUA domain RD09_RS15700 PF04773 FecR protein RD09_RS15700 PF16220 Domain of unknown function (DUF4880) RD09_RS15705 PF00593 TonB dependent receptor RD09_RS15705 PF07715 TonB-dependent Receptor Plug Domain RD09_RS15710 PF04264 YceI-like domain RD09_RS15725 PF03435 Saccharopine dehydrogenase NADP binding domain RD09_RS15725 PF16653 Saccharopine dehydrogenase C-terminal domain RD09_RS15730 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD09_RS15750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS15755 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS15760 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS15765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS15765 PF00005 ABC transporter RD09_RS15770 PF01425 Amidase RD09_RS15775 PF00202 Aminotransferase class-III RD09_RS15795 PF04972 BON domain RD09_RS15795 PF00691 OmpA family RD09_RS15800 PF01329 Pterin 4 alpha carbinolamine dehydratase RD09_RS15810 PF00483 Nucleotidyl transferase RD09_RS15815 PF01636 Phosphotransferase enzyme family RD09_RS15820 PF04453 LPS transport system D RD09_RS15825 PF09312 SurA N-terminal domain RD09_RS15825 PF00639 PPIC-type PPIASE domain RD09_RS15830 PF00398 Ribosomal RNA adenine dimethylase RD09_RS15835 PF02595 Glycerate kinase family RD09_RS15840 PF00224 Pyruvate kinase, barrel domain RD09_RS15840 PF02887 Pyruvate kinase, alpha/beta domain RD09_RS15845 PF07670 Nucleoside recognition RD09_RS15850 PF09317 Domain of unknown function (DUF1974) RD09_RS15850 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS15850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS15850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS15865 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS15870 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS15875 PF00005 ABC transporter RD09_RS15880 PF01032 FecCD transport family RD09_RS15890 PF00691 OmpA family RD09_RS15895 PF07676 WD40-like Beta Propeller Repeat RD09_RS15895 PF04052 TolB amino-terminal domain RD09_RS15905 PF02472 Biopolymer transport protein ExbD/TolR RD09_RS15910 PF01618 MotA/TolQ/ExbB proton channel family RD09_RS15915 PF03061 Thioesterase superfamily RD09_RS15920 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD09_RS15920 PF03129 Anticodon binding domain RD09_RS15920 PF04073 Aminoacyl-tRNA editing domain RD09_RS15925 PF00293 NUDIX domain RD09_RS15930 PF00072 Response regulator receiver domain RD09_RS15930 PF00486 Transcriptional regulatory protein, C terminal RD09_RS15940 PF02586 SOS response associated peptidase (SRAP) RD09_RS16005 PF06791 Prophage tail length tape measure protein RD09_RS16145 PF03180 NLPA lipoprotein RD09_RS16155 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RD09_RS16155 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RD09_RS16160 PF00005 ABC transporter RD09_RS16165 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD09_RS16165 PF00005 ABC transporter RD09_RS16170 PF02653 Branched-chain amino acid transport system / permease component RD09_RS16175 PF02653 Branched-chain amino acid transport system / permease component RD09_RS16180 PF13458 Periplasmic binding protein RD09_RS16185 PF01425 Amidase RD09_RS16190 PF00484 Carbonic anhydrase RD09_RS16205 PF09382 RQC domain RD09_RS16205 PF16124 RecQ zinc-binding RD09_RS16205 PF00570 HRDC domain RD09_RS16205 PF00271 Helicase conserved C-terminal domain RD09_RS16205 PF00270 DEAD/DEAH box helicase RD09_RS16210 PF05496 Holliday junction DNA helicase RuvB P-loop domain RD09_RS16210 PF05491 RuvB C-terminal winged helix domain RD09_RS16210 PF17864 RuvB AAA lid domain RD09_RS16215 PF00291 Pyridoxal-phosphate dependent enzyme RD09_RS16220 PF01370 NAD dependent epimerase/dehydratase family RD09_RS16225 PF07499 RuvA, C-terminal domain RD09_RS16225 PF01330 RuvA N terminal domain RD09_RS16230 PF02075 Crossover junction endodeoxyribonuclease RuvC RD09_RS16235 PF01808 AICARFT/IMPCHase bienzyme RD09_RS16235 PF02142 MGS-like domain RD09_RS16240 PF02954 Bacterial regulatory protein, Fis family RD09_RS16245 PF01207 Dihydrouridine synthase (Dus) RD09_RS16250 PF01494 FAD binding domain RD09_RS16260 PF00557 Metallopeptidase family M24 RD09_RS16260 PF05195 Aminopeptidase P, N-terminal domain RD09_RS16285 PF13609 Gram-negative porin RD09_RS16295 PF00483 Nucleotidyl transferase RD09_RS16300 PF13181 Tetratricopeptide repeat RD09_RS16300 PF01435 Peptidase family M48 RD09_RS16305 PF00561 alpha/beta hydrolase fold RD09_RS16320 PF01063 Amino-transferase class IV RD09_RS16335 PF00271 Helicase conserved C-terminal domain RD09_RS16335 PF00270 DEAD/DEAH box helicase RD09_RS16355 PF18146 Damage-inducible protein CinA KH domain RD09_RS16355 PF02464 Competence-damaged protein RD09_RS16355 PF00994 Probable molybdopterin binding domain RD09_RS16360 PF09339 IclR helix-turn-helix domain RD09_RS16360 PF01614 Bacterial transcriptional regulator RD09_RS16365 PF18807 Tripartite Tc toxins repeat RD09_RS16365 PF05785 Rho-activating domain of cytotoxic necrotizing factor RD09_RS16370 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS16380 PF01180 Dihydroorotate dehydrogenase RD09_RS16385 PF04377 Arginine-tRNA-protein transferase, C terminus RD09_RS16385 PF04376 Arginine-tRNA-protein transferase, N terminus RD09_RS16395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS16395 PF03466 LysR substrate binding domain RD09_RS16435 PF07729 FCD domain RD09_RS16435 PF00392 Bacterial regulatory proteins, gntR family RD09_RS16440 PF00205 Thiamine pyrophosphate enzyme, central domain RD09_RS16440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD09_RS16440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD09_RS16445 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS16450 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD09_RS16455 PF00390 Malic enzyme, N-terminal domain RD09_RS16455 PF01515 Phosphate acetyl/butaryl transferase RD09_RS16455 PF03949 Malic enzyme, NAD binding domain RD09_RS16465 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS16470 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS16475 PF00005 ABC transporter RD09_RS16475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS16490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS16490 PF03466 LysR substrate binding domain RD09_RS16505 PF01022 Bacterial regulatory protein, arsR family RD09_RS16520 PF03594 Benzoate membrane transport protein RD09_RS16525 PF00037 4Fe-4S binding domain RD09_RS16530 PF01467 Cytidylyltransferase-like RD09_RS16540 PF02881 SRP54-type protein, helical bundle domain RD09_RS16540 PF00448 SRP54-type protein, GTPase domain RD09_RS16555 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS16560 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS16565 PF00005 ABC transporter RD09_RS16575 PF00005 ABC transporter RD09_RS16595 PF00925 GTP cyclohydrolase II RD09_RS16595 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD09_RS16600 PF00885 6,7-dimethyl-8-ribityllumazine synthase RD09_RS16605 PF01029 NusB family RD09_RS16610 PF02769 AIR synthase related protein, C-terminal domain RD09_RS16610 PF00586 AIR synthase related protein, N-terminal domain RD09_RS16615 PF04608 Phosphatidylglycerophosphatase A RD09_RS16620 PF00994 Probable molybdopterin binding domain RD09_RS16620 PF02464 Competence-damaged protein RD09_RS16620 PF18146 Damage-inducible protein CinA KH domain RD09_RS16625 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RD09_RS16630 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS16635 PF01219 Prokaryotic diacylglycerol kinase RD09_RS16640 PF03631 Virulence factor BrkB RD09_RS16645 PF03797 Autotransporter beta-domain RD09_RS16645 PF03212 Pertactin RD09_RS16650 PF00118 TCP-1/cpn60 chaperonin family RD09_RS16655 PF00166 Chaperonin 10 Kd subunit RD09_RS16675 PF00890 FAD binding domain RD09_RS16685 PF03466 LysR substrate binding domain RD09_RS16685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS16690 PF00890 FAD binding domain RD09_RS16710 PF00990 Diguanylate cyclase, GGDEF domain RD09_RS16715 PF00072 Response regulator receiver domain RD09_RS16745 PF03781 Sulfatase-modifying factor enzyme 1 RD09_RS16745 PF12867 DinB superfamily RD09_RS16750 PF10017 Histidine-specific methyltransferase, SAM-dependent RD09_RS16760 PF13091 PLD-like domain RD09_RS16760 PF13396 Phospholipase_D-nuclease N-terminal RD09_RS16770 PF01645 Conserved region in glutamate synthase RD09_RS16775 PF04143 Sulphur transport RD09_RS16780 PF03547 Membrane transport protein RD09_RS16785 PF13673 Acetyltransferase (GNAT) domain RD09_RS16805 PF17876 Cold shock domain RD09_RS16805 PF08461 Ribonuclease R winged-helix domain RD09_RS16805 PF08206 Ribonuclease B OB domain RD09_RS16805 PF00575 S1 RNA binding domain RD09_RS16805 PF00773 RNB domain RD09_RS16810 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD09_RS16810 PF00588 SpoU rRNA Methylase family RD09_RS16815 PF01053 Cys/Met metabolism PLP-dependent enzyme RD09_RS16820 PF13640 2OG-Fe(II) oxygenase superfamily RD09_RS16820 PF18331 PKHD-type hydroxylase C-terminal domain RD09_RS16825 PF00216 Bacterial DNA-binding protein RD09_RS16840 PF01618 MotA/TolQ/ExbB proton channel family RD09_RS16845 PF02472 Biopolymer transport protein ExbD/TolR RD09_RS16850 PF00486 Transcriptional regulatory protein, C terminal RD09_RS16850 PF00072 Response regulator receiver domain RD09_RS16855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS16855 PF08521 Two-component sensor kinase N-terminal RD09_RS16855 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS16860 PF02705 K+ potassium transporter RD09_RS16865 PF00764 Arginosuccinate synthase RD09_RS16870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD09_RS16870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD09_RS16875 PF00202 Aminotransferase class-III RD09_RS16885 PF03466 LysR substrate binding domain RD09_RS16885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS16895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD09_RS16895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD09_RS16900 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS16915 PF00392 Bacterial regulatory proteins, gntR family RD09_RS16915 PF07729 FCD domain RD09_RS16925 PF07690 Major Facilitator Superfamily RD09_RS16935 PF02627 Carboxymuconolactone decarboxylase family RD09_RS16940 PF00578 AhpC/TSA family RD09_RS16945 PF00672 HAMP domain RD09_RS16945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS16945 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS16955 PF00072 Response regulator receiver domain RD09_RS16955 PF00486 Transcriptional regulatory protein, C terminal RD09_RS16960 PF00814 Glycoprotease family RD09_RS16965 PF03167 Uracil DNA glycosylase superfamily RD09_RS16970 PF07690 Major Facilitator Superfamily RD09_RS16975 PF02463 RecF/RecN/SMC N terminal domain RD09_RS16975 PF06470 SMC proteins Flexible Hinge Domain RD09_RS16985 PF12826 Helix-hairpin-helix motif RD09_RS16985 PF00533 BRCA1 C Terminus (BRCT) domain RD09_RS16985 PF01653 NAD-dependent DNA ligase adenylation domain RD09_RS16985 PF03120 NAD-dependent DNA ligase OB-fold domain RD09_RS16985 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RD09_RS17000 PF04279 Intracellular septation protein A RD09_RS17005 PF01641 SelR domain RD09_RS17010 PF00005 ABC transporter RD09_RS17015 PF02361 Cobalt transport protein RD09_RS17020 PF02632 BioY family RD09_RS17035 PF00005 ABC transporter RD09_RS17035 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD09_RS17040 PF01063 Amino-transferase class IV RD09_RS17055 PF02653 Branched-chain amino acid transport system / permease component RD09_RS17065 PF00005 ABC transporter RD09_RS17070 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD09_RS17070 PF00005 ABC transporter RD09_RS17075 PF10576 Iron-sulfur binding domain of endonuclease III RD09_RS17075 PF00633 Helix-hairpin-helix motif RD09_RS17075 PF00730 HhH-GPD superfamily base excision DNA repair protein RD09_RS17080 PF04060 Putative Fe-S cluster RD09_RS17090 PF00970 Oxidoreductase FAD-binding domain RD09_RS17090 PF00175 Oxidoreductase NAD-binding domain RD09_RS17095 PF00037 4Fe-4S binding domain RD09_RS17095 PF11953 Domain of unknown function (DUF3470) RD09_RS17100 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RD09_RS17100 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RD09_RS17105 PF01042 Endoribonuclease L-PSP RD09_RS17115 PF06167 Glucose-regulated metallo-peptidase M90 RD09_RS17120 PF02824 TGS domain RD09_RS17120 PF04607 Region found in RelA / SpoT proteins RD09_RS17120 PF13291 ACT domain RD09_RS17125 PF01546 Peptidase family M20/M25/M40 RD09_RS17125 PF07687 Peptidase dimerisation domain RD09_RS17130 PF00291 Pyridoxal-phosphate dependent enzyme RD09_RS17135 PF00290 Tryptophan synthase alpha chain RD09_RS17140 PF17848 Acetyl-coA carboxylase zinc finger domain RD09_RS17140 PF01039 Carboxyl transferase domain RD09_RS17145 PF09411 Lipid A 3-O-deacylase (PagL) RD09_RS17160 PF00575 S1 RNA binding domain RD09_RS17160 PF10150 Ribonuclease E/G family RD09_RS17160 PF12111 Polyribonucleotide phosphorylase C terminal RD09_RS17165 PF00849 RNA pseudouridylate synthase RD09_RS17165 PF01479 S4 domain RD09_RS17170 PF13419 Haloacid dehalogenase-like hydrolase RD09_RS17175 PF00174 Oxidoreductase molybdopterin binding domain RD09_RS17180 PF01794 Ferric reductase like transmembrane component RD09_RS17190 PF02515 CoA-transferase family III RD09_RS17195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS17195 PF03466 LysR substrate binding domain RD09_RS17205 PF02515 CoA-transferase family III RD09_RS17225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS17225 PF03466 LysR substrate binding domain RD09_RS17230 PF01042 Endoribonuclease L-PSP RD09_RS17235 PF00175 Oxidoreductase NAD-binding domain RD09_RS17235 PF00042 Globin RD09_RS17235 PF00970 Oxidoreductase FAD-binding domain RD09_RS17240 PF02667 Short chain fatty acid transporter RD09_RS17245 PF00171 Aldehyde dehydrogenase family RD09_RS17250 PF00392 Bacterial regulatory proteins, gntR family RD09_RS17250 PF07729 FCD domain RD09_RS17260 PF00313 'Cold-shock' DNA-binding domain RD09_RS17265 PF03466 LysR substrate binding domain RD09_RS17265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS17285 PF00108 Thiolase, N-terminal domain RD09_RS17285 PF02803 Thiolase, C-terminal domain RD09_RS17295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS17295 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS17295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS17300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS17300 PF03466 LysR substrate binding domain RD09_RS17305 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS17310 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS17315 PF02515 CoA-transferase family III RD09_RS17320 PF03471 Transporter associated domain RD09_RS17320 PF03741 Integral membrane protein TerC family RD09_RS17325 PF02308 MgtC family RD09_RS17330 PF14492 Elongation Factor G, domain II RD09_RS17330 PF03764 Elongation factor G, domain IV RD09_RS17330 PF00009 Elongation factor Tu GTP binding domain RD09_RS17330 PF00679 Elongation factor G C-terminus RD09_RS17330 PF03144 Elongation factor Tu domain 2 RD09_RS17335 PF00155 Aminotransferase class I and II RD09_RS17335 PF00392 Bacterial regulatory proteins, gntR family RD09_RS17345 PF00582 Universal stress protein family RD09_RS17350 PF00679 Elongation factor G C-terminus RD09_RS17350 PF14492 Elongation Factor G, domain II RD09_RS17350 PF03764 Elongation factor G, domain IV RD09_RS17350 PF03144 Elongation factor Tu domain 2 RD09_RS17350 PF00009 Elongation factor Tu GTP binding domain RD09_RS17360 PF00873 AcrB/AcrD/AcrF family RD09_RS17365 PF00929 Exonuclease RD09_RS17380 PF02667 Short chain fatty acid transporter RD09_RS17390 PF03616 Sodium/glutamate symporter RD09_RS17405 PF00535 Glycosyl transferase family 2 RD09_RS17410 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RD09_RS17425 PF12146 Serine aminopeptidase, S33 RD09_RS17430 PF01810 LysE type translocator RD09_RS17435 PF00892 EamA-like transporter family RD09_RS17445 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS17455 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS17465 PF03466 LysR substrate binding domain RD09_RS17465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS17470 PF00205 Thiamine pyrophosphate enzyme, central domain RD09_RS17470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD09_RS17470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD09_RS17475 PF02515 CoA-transferase family III RD09_RS17480 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD09_RS17480 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD09_RS17480 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS17485 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS17495 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS17500 PF09339 IclR helix-turn-helix domain RD09_RS17520 PF02515 CoA-transferase family III RD09_RS17525 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS17530 PF02515 CoA-transferase family III RD09_RS17550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD09_RS17550 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD09_RS17555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD09_RS17560 PF02021 Uncharacterised protein family UPF0102 RD09_RS17565 PF13580 SIS domain RD09_RS17570 PF04972 BON domain RD09_RS17575 PF00578 AhpC/TSA family RD09_RS17580 PF03180 NLPA lipoprotein RD09_RS17585 PF00696 Amino acid kinase family RD09_RS17595 PF00440 Bacterial regulatory proteins, tetR family RD09_RS17600 PF00939 Sodium:sulfate symporter transmembrane region RD09_RS17605 PF02615 Malate/L-lactate dehydrogenase RD09_RS17610 PF01098 Cell cycle protein RD09_RS17615 PF00905 Penicillin binding protein transpeptidase domain RD09_RS17615 PF03717 Penicillin-binding Protein dimerisation domain RD09_RS17625 PF04085 rod shape-determining protein MreC RD09_RS17635 PF02686 Glu-tRNAGln amidotransferase C subunit RD09_RS17640 PF01425 Amidase RD09_RS17645 PF02934 GatB/GatE catalytic domain RD09_RS17645 PF02637 GatB domain RD09_RS17650 PF00156 Phosphoribosyl transferase domain RD09_RS17655 PF03372 Endonuclease/Exonuclease/phosphatase family RD09_RS17660 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD09_RS17660 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD09_RS17665 PF03458 UPF0126 domain RD09_RS17690 PF00970 Oxidoreductase FAD-binding domain RD09_RS17690 PF00175 Oxidoreductase NAD-binding domain RD09_RS17690 PF00111 2Fe-2S iron-sulfur cluster binding domain RD09_RS17700 PF00171 Aldehyde dehydrogenase family RD09_RS17720 PF07729 FCD domain RD09_RS17720 PF00392 Bacterial regulatory proteins, gntR family RD09_RS17730 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD09_RS17755 PF08281 Sigma-70, region 4 RD09_RS17755 PF04542 Sigma-70 region 2 RD09_RS17760 PF16220 Domain of unknown function (DUF4880) RD09_RS17760 PF04773 FecR protein RD09_RS17765 PF04886 PT repeat RD09_RS17765 PF07715 TonB-dependent Receptor Plug Domain RD09_RS17765 PF00593 TonB dependent receptor RD09_RS17770 PF05171 Haemin-degrading HemS.ChuX domain RD09_RS17775 PF01497 Periplasmic binding protein RD09_RS17780 PF01032 FecCD transport family RD09_RS17785 PF00005 ABC transporter RD09_RS17790 PF04463 Protein of unknown function (DUF523) RD09_RS17795 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA RD09_RS17800 PF13532 2OG-Fe(II) oxygenase superfamily RD09_RS17805 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD09_RS17805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD09_RS17810 PF03707 Bacterial signalling protein N terminal repeat RD09_RS17810 PF00990 Diguanylate cyclase, GGDEF domain RD09_RS17810 PF00563 EAL domain RD09_RS17835 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS17840 PF12706 Beta-lactamase superfamily domain RD09_RS17855 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS17860 PF13193 AMP-binding enzyme C-terminal domain RD09_RS17860 PF00501 AMP-binding enzyme RD09_RS17875 PF00912 Transglycosylase RD09_RS17885 PF00149 Calcineurin-like phosphoesterase RD09_RS17890 PF01553 Acyltransferase RD09_RS17895 PF01979 Amidohydrolase family RD09_RS17900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD09_RS17900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD09_RS17905 PF03652 Holliday junction resolvase RD09_RS17910 PF02622 Uncharacterized ACR, COG1678 RD09_RS17915 PF00301 Rubredoxin RD09_RS17920 PF08543 Phosphomethylpyrimidine kinase RD09_RS17925 PF02581 Thiamine monophosphate synthase RD09_RS17930 PF00202 Aminotransferase class-III RD09_RS17950 PF13193 AMP-binding enzyme C-terminal domain RD09_RS17950 PF00501 AMP-binding enzyme RD09_RS17955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD09_RS17955 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS17955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS17960 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS17975 PF00005 ABC transporter RD09_RS17980 PF00005 ABC transporter RD09_RS17980 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD09_RS17985 PF11862 Domain of unknown function (DUF3382) RD09_RS17985 PF02653 Branched-chain amino acid transport system / permease component RD09_RS17990 PF02653 Branched-chain amino acid transport system / permease component RD09_RS18000 PF07859 alpha/beta hydrolase fold RD09_RS18030 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RD09_RS18040 PF03466 LysR substrate binding domain RD09_RS18040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS18045 PF07690 Major Facilitator Superfamily RD09_RS18050 PF00920 Dehydratase family RD09_RS18055 PF12833 Helix-turn-helix domain RD09_RS18060 PF08502 LeuA allosteric (dimerisation) domain RD09_RS18060 PF00682 HMGL-like RD09_RS18070 PF07859 alpha/beta hydrolase fold RD09_RS18075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS18080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD09_RS18085 PF04299 Putative FMN-binding domain RD09_RS18095 PF13180 PDZ domain RD09_RS18100 PF01784 NIF3 (NGG1p interacting factor 3) RD09_RS18105 PF01741 Large-conductance mechanosensitive channel, MscL RD09_RS18110 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RD09_RS18110 PF00355 Rieske [2Fe-2S] domain RD09_RS18115 PF00032 Cytochrome b(C-terminal)/b6/petD RD09_RS18115 PF00033 Cytochrome b/b6/petB RD09_RS18120 PF02167 Cytochrome C1 family RD09_RS18125 PF00043 Glutathione S-transferase, C-terminal domain RD09_RS18125 PF02798 Glutathione S-transferase, N-terminal domain RD09_RS18130 PF04386 Stringent starvation protein B RD09_RS18155 PF13609 Gram-negative porin RD09_RS18170 PF00156 Phosphoribosyl transferase domain RD09_RS18175 PF00005 ABC transporter RD09_RS18175 PF00664 ABC transporter transmembrane region RD09_RS18180 PF00005 ABC transporter RD09_RS18180 PF00664 ABC transporter transmembrane region RD09_RS18185 PF08173 Membrane bound YbgT-like protein RD09_RS18190 PF02322 Cytochrome bd terminal oxidase subunit II RD09_RS18195 PF01654 Cytochrome bd terminal oxidase subunit I RD09_RS18215 PF02770 Acyl-CoA dehydrogenase, middle domain RD09_RS18215 PF18158 Adaptive response protein AidB N-terminal domain RD09_RS18215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD09_RS18220 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS18225 PF02515 CoA-transferase family III RD09_RS18235 PF03466 LysR substrate binding domain RD09_RS18235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS18240 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS18250 PF10415 Fumarase C C-terminus RD09_RS18250 PF00206 Lyase RD09_RS18255 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RD09_RS18260 PF01520 N-acetylmuramoyl-L-alanine amidase RD09_RS18260 PF11741 AMIN domain RD09_RS18265 PF09335 SNARE associated Golgi protein RD09_RS18270 PF08676 MutL C terminal dimerisation domain RD09_RS18270 PF01119 DNA mismatch repair protein, C-terminal domain RD09_RS18280 PF02769 AIR synthase related protein, C-terminal domain RD09_RS18280 PF00586 AIR synthase related protein, N-terminal domain RD09_RS18285 PF00308 Bacterial dnaA protein RD09_RS18295 PF12626 Polymerase A arginine-rich C-terminus RD09_RS18295 PF12627 Probable RNA and SrmB- binding site of polymerase A RD09_RS18295 PF01743 Poly A polymerase head domain RD09_RS18300 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RD09_RS18305 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS18315 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD09_RS18320 PF03480 Bacterial extracellular solute-binding protein, family 7 RD09_RS18325 PF07702 UTRA domain RD09_RS18325 PF00392 Bacterial regulatory proteins, gntR family RD09_RS18330 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD09_RS18330 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD09_RS18335 PF02627 Carboxymuconolactone decarboxylase family RD09_RS18365 PF09518 HindIII restriction endonuclease RD09_RS18370 PF02355 Protein export membrane protein RD09_RS18370 PF07549 SecD/SecF GG Motif RD09_RS18375 PF01964 Radical SAM ThiC family RD09_RS18375 PF13667 ThiC-associated domain RD09_RS18380 PF00171 Aldehyde dehydrogenase family RD09_RS18385 PF01565 FAD binding domain RD09_RS18385 PF02913 FAD linked oxidases, C-terminal domain RD09_RS18410 PF06508 Queuosine biosynthesis protein QueC RD09_RS18415 PF00311 Phosphoenolpyruvate carboxylase RD09_RS18420 PF03797 Autotransporter beta-domain RD09_RS18420 PF00082 Subtilase family RD09_RS18425 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD09_RS18425 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD09_RS18430 PF02667 Short chain fatty acid transporter RD09_RS18440 PF09339 IclR helix-turn-helix domain RD09_RS18440 PF01614 Bacterial transcriptional regulator RD09_RS18445 PF01144 Coenzyme A transferase RD09_RS18450 PF01144 Coenzyme A transferase RD09_RS18455 PF02426 Muconolactone delta-isomerase RD09_RS18465 PF12146 Serine aminopeptidase, S33 RD09_RS18485 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS18495 PF02515 CoA-transferase family III RD09_RS18500 PF00392 Bacterial regulatory proteins, gntR family RD09_RS18500 PF07729 FCD domain RD09_RS18505 PF02347 Glycine cleavage system P-protein RD09_RS18510 PF01597 Glycine cleavage H-protein RD09_RS18515 PF01571 Aminomethyltransferase folate-binding domain RD09_RS18515 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD09_RS18520 PF02535 ZIP Zinc transporter RD09_RS18525 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD09_RS18525 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD09_RS18540 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RD09_RS18540 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RD09_RS18540 PF01276 Orn/Lys/Arg decarboxylase, major domain RD09_RS18565 PF00692 dUTPase RD09_RS18580 PF10609 NUBPL iron-transfer P-loop NTPase RD09_RS18590 PF01588 Putative tRNA binding domain RD09_RS18590 PF09334 tRNA synthetases class I (M) RD09_RS18595 PF17773 UPF0176 acylphosphatase like domain RD09_RS18595 PF00581 Rhodanese-like domain RD09_RS18620 PF00210 Ferritin-like domain RD09_RS18630 PF03144 Elongation factor Tu domain 2 RD09_RS18630 PF16658 Class II release factor RF3, C-terminal domain RD09_RS18630 PF00009 Elongation factor Tu GTP binding domain RD09_RS18635 PF01810 LysE type translocator RD09_RS18640 PF00270 DEAD/DEAH box helicase RD09_RS18640 PF00271 Helicase conserved C-terminal domain RD09_RS18650 PF04536 TPM domain RD09_RS18655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS18655 PF00005 ABC transporter RD09_RS18670 PF03109 ABC1 family RD09_RS18685 PF01209 ubiE/COQ5 methyltransferase family RD09_RS18690 PF00072 Response regulator receiver domain RD09_RS18690 PF00486 Transcriptional regulatory protein, C terminal RD09_RS18695 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS18695 PF11808 Phosphate regulon sensor protein PhoR RD09_RS18695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS18695 PF00989 PAS fold RD09_RS18700 PF00072 Response regulator receiver domain RD09_RS18700 PF00486 Transcriptional regulatory protein, C terminal RD09_RS18705 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS18705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS18705 PF00672 HAMP domain RD09_RS18715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD09_RS18715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD09_RS18715 PF01842 ACT domain RD09_RS18720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS18720 PF03466 LysR substrate binding domain RD09_RS18730 PF02682 Carboxyltransferase domain, subdomain C and D RD09_RS18735 PF02626 Carboxyltransferase domain, subdomain A and B RD09_RS18740 PF03746 LamB/YcsF family RD09_RS18750 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS18755 PF01494 FAD binding domain RD09_RS18760 PF01494 FAD binding domain RD09_RS18765 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS18775 PF02515 CoA-transferase family III RD09_RS18780 PF07729 FCD domain RD09_RS18780 PF00392 Bacterial regulatory proteins, gntR family RD09_RS18795 PF00585 C-terminal regulatory domain of Threonine dehydratase RD09_RS18795 PF00291 Pyridoxal-phosphate dependent enzyme RD09_RS18800 PF13609 Gram-negative porin RD09_RS18815 PF03466 LysR substrate binding domain RD09_RS18815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD09_RS18825 PF04963 Sigma-54 factor, core binding domain RD09_RS18825 PF04552 Sigma-54, DNA binding domain RD09_RS18825 PF00309 Sigma-54 factor, Activator interacting domain (AID) RD09_RS18835 PF08502 LeuA allosteric (dimerisation) domain RD09_RS18835 PF00682 HMGL-like RD09_RS18840 PF01425 Amidase RD09_RS18850 PF00356 Bacterial regulatory proteins, lacI family RD09_RS18865 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS18870 PF12857 TOBE-like domain RD09_RS18870 PF00005 ABC transporter RD09_RS18885 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD09_RS18885 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD09_RS18885 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD09_RS18890 PF07690 Major Facilitator Superfamily RD09_RS18895 PF12804 MobA-like NTP transferase domain RD09_RS18895 PF00132 Bacterial transferase hexapeptide (six repeats) RD09_RS18895 PF14602 Hexapeptide repeat of succinyl-transferase RD09_RS18915 PF02630 SCO1/SenC RD09_RS18920 PF01040 UbiA prenyltransferase family RD09_RS18925 PF02628 Cytochrome oxidase assembly protein RD09_RS18945 PF00510 Cytochrome c oxidase subunit III RD09_RS18960 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD09_RS18965 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD09_RS18965 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RD09_RS18975 PF00999 Sodium/hydrogen exchanger family RD09_RS18980 PF00149 Calcineurin-like phosphoesterase RD09_RS18985 PF00140 Sigma-70 factor, region 1.2 RD09_RS18985 PF04545 Sigma-70, region 4 RD09_RS18985 PF04542 Sigma-70 region 2 RD09_RS18995 PF00756 Putative esterase RD09_RS19000 PF00107 Zinc-binding dehydrogenase RD09_RS19000 PF08240 Alcohol dehydrogenase GroES-like domain RD09_RS19010 PF01493 GXGXG motif RD09_RS19010 PF00310 Glutamine amidotransferases class-II RD09_RS19010 PF01645 Conserved region in glutamate synthase RD09_RS19010 PF04898 Glutamate synthase central domain RD09_RS19015 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD09_RS19015 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RD09_RS19020 PF03922 OmpW family RD09_RS19025 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS19030 PF00005 ABC transporter RD09_RS19035 PF02405 Permease MlaE RD09_RS19040 PF02470 MlaD protein RD09_RS19045 PF04333 MlaA lipoprotein RD09_RS19055 PF00005 ABC transporter RD09_RS19060 PF01061 ABC-2 type transporter RD09_RS19070 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD09_RS19075 PF01634 ATP phosphoribosyltransferase RD09_RS19080 PF00815 Histidinol dehydrogenase RD09_RS19085 PF00155 Aminotransferase class I and II RD09_RS19090 PF00475 Imidazoleglycerol-phosphate dehydratase RD09_RS19095 PF00117 Glutamine amidotransferase class-I RD09_RS19100 PF00977 Histidine biosynthesis protein RD09_RS19105 PF00977 Histidine biosynthesis protein RD09_RS19110 PF01502 Phosphoribosyl-AMP cyclohydrolase RD09_RS19115 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RD09_RS19120 PF01230 HIT domain RD09_RS19125 PF02416 mttA/Hcf106 family RD09_RS19130 PF02416 mttA/Hcf106 family RD09_RS19135 PF00902 Sec-independent protein translocase protein (TatC) RD09_RS19145 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS19150 PF02917 Pertussis toxin, subunit 1 RD09_RS19155 PF03440 Aerolysin/Pertussis toxin (APT) domain RD09_RS19155 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD09_RS19160 PF09275 Pertussis toxin S4 subunit RD09_RS19165 PF09276 Pertussis toxin S5 subunit RD09_RS19170 PF03440 Aerolysin/Pertussis toxin (APT) domain RD09_RS19170 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD09_RS19175 PF04956 TrbC/VIRB2 family RD09_RS19180 PF05101 Type IV secretory pathway, VirB3-like protein RD09_RS19185 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RD09_RS19190 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RD09_RS19200 PF04335 VirB8 protein RD09_RS19205 PF03524 Conjugal transfer protein RD09_RS19210 PF03743 Bacterial conjugation TrbI-like protein RD09_RS19215 PF00437 Type II/IV secretion system protein RD09_RS19225 PF00892 EamA-like transporter family RD09_RS19245 PF10396 GTP-binding protein TrmE N-terminus RD09_RS19245 PF12631 MnmE helical domain RD09_RS19245 PF01926 50S ribosome-binding GTPase RD09_RS19250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS19255 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS19260 PF12911 N-terminal TM domain of oligopeptide transport permease C RD09_RS19260 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS19265 PF00005 ABC transporter RD09_RS19265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS19275 PF01960 ArgJ family RD09_RS19285 PF00293 NUDIX domain RD09_RS19305 PF02321 Outer membrane efflux protein RD09_RS19310 PF00873 AcrB/AcrD/AcrF family RD09_RS19315 PF00873 AcrB/AcrD/AcrF family RD09_RS19320 PF13533 Biotin-lipoyl like RD09_RS19325 PF07072 Cell division protein RD09_RS19330 PF01121 Dephospho-CoA kinase RD09_RS19335 PF06750 Bacterial Peptidase A24 N-terminal domain RD09_RS19335 PF01478 Type IV leader peptidase family RD09_RS19350 PF02569 Pantoate-beta-alanine ligase RD09_RS19355 PF02616 Segregation and condensation protein ScpA RD09_RS19365 PF07690 Major Facilitator Superfamily RD09_RS19370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RD09_RS19370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RD09_RS19380 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS19385 PF00005 ABC transporter RD09_RS19390 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS19395 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS19400 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD09_RS19405 PF00005 ABC transporter RD09_RS19410 PF18075 FtsX extracellular domain RD09_RS19415 PF03975 CheD chemotactic sensory transduction RD09_RS19425 PF14815 NUDIX domain RD09_RS19425 PF10576 Iron-sulfur binding domain of endonuclease III RD09_RS19425 PF00730 HhH-GPD superfamily base excision DNA repair protein RD09_RS19425 PF00633 Helix-hairpin-helix motif RD09_RS19435 PF08241 Methyltransferase domain RD09_RS19445 PF02515 CoA-transferase family III RD09_RS19450 PF02515 CoA-transferase family III RD09_RS19460 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS19465 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS19470 PF00881 Nitroreductase family RD09_RS19480 PF00682 HMGL-like RD09_RS19485 PF00378 Enoyl-CoA hydratase/isomerase RD09_RS19490 PF02515 CoA-transferase family III RD09_RS19495 PF03401 Tripartite tricarboxylate transporter family receptor RD09_RS19505 PF00199 Catalase RD09_RS19505 PF06628 Catalase-related immune-responsive RD09_RS19510 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS19515 PF00005 ABC transporter RD09_RS19525 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD09_RS19530 PF07687 Peptidase dimerisation domain RD09_RS19530 PF01546 Peptidase family M20/M25/M40 RD09_RS19535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS19535 PF00005 ABC transporter RD09_RS19540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD09_RS19540 PF00005 ABC transporter RD09_RS19545 PF12911 N-terminal TM domain of oligopeptide transport permease C RD09_RS19545 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS19550 PF00528 Binding-protein-dependent transport system inner membrane component RD09_RS19555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD09_RS19560 PF10396 GTP-binding protein TrmE N-terminus RD09_RS19560 PF12631 MnmE helical domain RD09_RS19560 PF01926 50S ribosome-binding GTPase RD09_RS19570 PF00486 Transcriptional regulatory protein, C terminal RD09_RS19570 PF00072 Response regulator receiver domain RD09_RS19575 PF00512 His Kinase A (phospho-acceptor) domain RD09_RS19575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD09_RS19590 PF01970 Tripartite tricarboxylate transporter TctA family RD09_RS19595 PF00155 Aminotransferase class I and II RD09_RS19600 PF00313 'Cold-shock' DNA-binding domain