locus-tag class description RD12_RS00005 PF01134 Glucose inhibited division protein A RD12_RS00005 PF13932 GidA associated domain RD12_RS00010 PF02527 rRNA small subunit methyltransferase G RD12_RS00015 PF13614 AAA domain RD12_RS00025 PF02195 ParB-like nuclease domain RD12_RS00025 PF17762 HTH domain found in ParB protein RD12_RS00030 PF00710 Asparaginase, N-terminal RD12_RS00030 PF17763 Glutaminase/Asparaginase C-terminal domain RD12_RS00035 PF17763 Glutaminase/Asparaginase C-terminal domain RD12_RS00035 PF00710 Asparaginase, N-terminal RD12_RS00055 PF03144 Elongation factor Tu domain 2 RD12_RS00055 PF03143 Elongation factor Tu C-terminal domain RD12_RS00055 PF00009 Elongation factor Tu GTP binding domain RD12_RS00065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RD12_RS00070 PF02357 Transcription termination factor nusG RD12_RS00070 PF00467 KOW motif RD12_RS00075 PF03946 Ribosomal protein L11, N-terminal domain RD12_RS00075 PF00298 Ribosomal protein L11, RNA binding domain RD12_RS00080 PF00687 Ribosomal protein L1p/L10e family RD12_RS00085 PF00466 Ribosomal protein L10 RD12_RS00090 PF00542 Ribosomal protein L7/L12 C-terminal domain RD12_RS00090 PF16320 Ribosomal protein L7/L12 dimerisation domain RD12_RS00095 PF04560 RNA polymerase Rpb2, domain 7 RD12_RS00095 PF00562 RNA polymerase Rpb2, domain 6 RD12_RS00095 PF10385 RNA polymerase beta subunit external 1 domain RD12_RS00095 PF04565 RNA polymerase Rpb2, domain 3 RD12_RS00095 PF04561 RNA polymerase Rpb2, domain 2 RD12_RS00095 PF04563 RNA polymerase beta subunit RD12_RS00100 PF05000 RNA polymerase Rpb1, domain 4 RD12_RS00100 PF04997 RNA polymerase Rpb1, domain 1 RD12_RS00100 PF00623 RNA polymerase Rpb1, domain 2 RD12_RS00100 PF04983 RNA polymerase Rpb1, domain 3 RD12_RS00100 PF04998 RNA polymerase Rpb1, domain 5 RD12_RS00130 PF00072 Response regulator receiver domain RD12_RS00130 PF00486 Transcriptional regulatory protein, C terminal RD12_RS00140 PF02515 CoA-transferase family III RD12_RS00155 PF01575 MaoC like domain RD12_RS00160 PF03466 LysR substrate binding domain RD12_RS00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS00165 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS00185 PF02091 Glycyl-tRNA synthetase alpha subunit RD12_RS00190 PF05746 DALR anticodon binding domain RD12_RS00190 PF02092 Glycyl-tRNA synthetase beta subunit RD12_RS00200 PF01553 Acyltransferase RD12_RS00210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD12_RS00215 PF01327 Polypeptide deformylase RD12_RS00250 PF02615 Malate/L-lactate dehydrogenase RD12_RS00260 PF00561 alpha/beta hydrolase fold RD12_RS00265 PF00561 alpha/beta hydrolase fold RD12_RS00265 PF07021 Methionine biosynthesis protein MetW RD12_RS00275 PF07690 Major Facilitator Superfamily RD12_RS00285 PF01177 Asp/Glu/Hydantoin racemase RD12_RS00290 PF00005 ABC transporter RD12_RS00295 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS00300 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS00305 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS00335 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS00350 PF00970 Oxidoreductase FAD-binding domain RD12_RS00350 PF00175 Oxidoreductase NAD-binding domain RD12_RS00350 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS00355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD12_RS00365 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS00395 PF00183 Hsp90 protein RD12_RS00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS00400 PF00043 Glutathione S-transferase, C-terminal domain RD12_RS00400 PF13417 Glutathione S-transferase, N-terminal domain RD12_RS00405 PF01510 N-acetylmuramoyl-L-alanine amidase RD12_RS00415 PF01578 Cytochrome C assembly protein RD12_RS00420 PF00448 SRP54-type protein, GTPase domain RD12_RS00420 PF02978 Signal peptide binding domain RD12_RS00420 PF02881 SRP54-type protein, helical bundle domain RD12_RS00435 PF02719 Polysaccharide biosynthesis protein RD12_RS00445 PF10997 Alternate to MurJ RD12_RS00450 PF00534 Glycosyl transferases group 1 RD12_RS00450 PF00862 Sucrose synthase RD12_RS00455 PF02397 Bacterial sugar transferase RD12_RS00460 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD12_RS00470 PF02350 UDP-N-acetylglucosamine 2-epimerase RD12_RS00475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD12_RS00480 PF00132 Bacterial transferase hexapeptide (six repeats) RD12_RS00485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RD12_RS00485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RD12_RS00490 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD12_RS00495 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RD12_RS00495 PF00534 Glycosyl transferases group 1 RD12_RS00505 PF03309 Type III pantothenate kinase RD12_RS00515 PF02405 Permease MlaE RD12_RS00520 PF00005 ABC transporter RD12_RS00545 PF07943 Penicillin-binding protein 5, C-terminal domain RD12_RS00545 PF00768 D-alanyl-D-alanine carboxypeptidase RD12_RS00550 PF01063 Amino-transferase class IV RD12_RS00555 PF04359 Protein of unknown function (DUF493) RD12_RS00560 PF03099 Biotin/lipoate A/B protein ligase family RD12_RS00565 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RD12_RS00565 PF04055 Radical SAM superfamily RD12_RS00570 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RD12_RS00575 PF04321 RmlD substrate binding domain RD12_RS00580 PF16363 GDP-mannose 4,6 dehydratase RD12_RS00595 PF01053 Cys/Met metabolism PLP-dependent enzyme RD12_RS00600 PF01323 DSBA-like thioredoxin domain RD12_RS00600 PF00085 Thioredoxin RD12_RS00610 PF03485 Arginyl tRNA synthetase N terminal domain RD12_RS00610 PF05746 DALR anticodon binding domain RD12_RS00610 PF00750 tRNA synthetases class I (R) RD12_RS00630 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS00635 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS00640 PF13416 Bacterial extracellular solute-binding protein RD12_RS00645 PF17912 MalK OB fold domain RD12_RS00645 PF00005 ABC transporter RD12_RS00650 PF00149 Calcineurin-like phosphoesterase RD12_RS00660 PF12857 TOBE-like domain RD12_RS00660 PF00005 ABC transporter RD12_RS00665 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS00680 PF00356 Bacterial regulatory proteins, lacI family RD12_RS00690 PF01425 Amidase RD12_RS00695 PF08502 LeuA allosteric (dimerisation) domain RD12_RS00695 PF00682 HMGL-like RD12_RS00705 PF04552 Sigma-54, DNA binding domain RD12_RS00705 PF00309 Sigma-54 factor, Activator interacting domain (AID) RD12_RS00705 PF04963 Sigma-54 factor, core binding domain RD12_RS00715 PF03466 LysR substrate binding domain RD12_RS00715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS00730 PF13609 Gram-negative porin RD12_RS00735 PF00291 Pyridoxal-phosphate dependent enzyme RD12_RS00735 PF00585 C-terminal regulatory domain of Threonine dehydratase RD12_RS00750 PF07729 FCD domain RD12_RS00750 PF00392 Bacterial regulatory proteins, gntR family RD12_RS00755 PF02515 CoA-transferase family III RD12_RS00765 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS00770 PF01494 FAD binding domain RD12_RS00775 PF01494 FAD binding domain RD12_RS00780 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS00790 PF03746 LamB/YcsF family RD12_RS00795 PF02626 Carboxyltransferase domain, subdomain A and B RD12_RS00800 PF02682 Carboxyltransferase domain, subdomain C and D RD12_RS00810 PF03466 LysR substrate binding domain RD12_RS00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS00815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD12_RS00815 PF01842 ACT domain RD12_RS00815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD12_RS00825 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS00825 PF00672 HAMP domain RD12_RS00825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS00830 PF00072 Response regulator receiver domain RD12_RS00830 PF00486 Transcriptional regulatory protein, C terminal RD12_RS00835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS00835 PF11808 Phosphate regulon sensor protein PhoR RD12_RS00835 PF00989 PAS fold RD12_RS00835 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS00840 PF00072 Response regulator receiver domain RD12_RS00840 PF00486 Transcriptional regulatory protein, C terminal RD12_RS00845 PF01209 ubiE/COQ5 methyltransferase family RD12_RS00860 PF03109 ABC1 family RD12_RS00875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS00875 PF00005 ABC transporter RD12_RS00880 PF04536 TPM domain RD12_RS00890 PF00270 DEAD/DEAH box helicase RD12_RS00890 PF00271 Helicase conserved C-terminal domain RD12_RS00895 PF01810 LysE type translocator RD12_RS00900 PF03144 Elongation factor Tu domain 2 RD12_RS00900 PF00009 Elongation factor Tu GTP binding domain RD12_RS00900 PF16658 Class II release factor RF3, C-terminal domain RD12_RS00910 PF00210 Ferritin-like domain RD12_RS00935 PF00581 Rhodanese-like domain RD12_RS00935 PF17773 UPF0176 acylphosphatase like domain RD12_RS00940 PF09334 tRNA synthetases class I (M) RD12_RS00940 PF01588 Putative tRNA binding domain RD12_RS00950 PF10609 NUBPL iron-transfer P-loop NTPase RD12_RS00965 PF00692 dUTPase RD12_RS00990 PF01276 Orn/Lys/Arg decarboxylase, major domain RD12_RS00990 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RD12_RS00990 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RD12_RS01005 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD12_RS01005 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD12_RS01010 PF02535 ZIP Zinc transporter RD12_RS01015 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD12_RS01015 PF01571 Aminomethyltransferase folate-binding domain RD12_RS01020 PF01597 Glycine cleavage H-protein RD12_RS01025 PF02347 Glycine cleavage system P-protein RD12_RS01030 PF07729 FCD domain RD12_RS01030 PF00392 Bacterial regulatory proteins, gntR family RD12_RS01035 PF02515 CoA-transferase family III RD12_RS01045 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS01065 PF12146 Serine aminopeptidase, S33 RD12_RS01075 PF02426 Muconolactone delta-isomerase RD12_RS01080 PF01144 Coenzyme A transferase RD12_RS01085 PF01144 Coenzyme A transferase RD12_RS01090 PF09339 IclR helix-turn-helix domain RD12_RS01090 PF01614 Bacterial transcriptional regulator RD12_RS01100 PF02667 Short chain fatty acid transporter RD12_RS01105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD12_RS01105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD12_RS01110 PF03797 Autotransporter beta-domain RD12_RS01110 PF00082 Subtilase family RD12_RS01115 PF00311 Phosphoenolpyruvate carboxylase RD12_RS01120 PF06508 Queuosine biosynthesis protein QueC RD12_RS01145 PF02913 FAD linked oxidases, C-terminal domain RD12_RS01145 PF01565 FAD binding domain RD12_RS01150 PF00171 Aldehyde dehydrogenase family RD12_RS01155 PF01964 Radical SAM ThiC family RD12_RS01155 PF13667 ThiC-associated domain RD12_RS01160 PF02355 Protein export membrane protein RD12_RS01160 PF07549 SecD/SecF GG Motif RD12_RS01165 PF09518 HindIII restriction endonuclease RD12_RS01195 PF02627 Carboxymuconolactone decarboxylase family RD12_RS01200 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD12_RS01200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD12_RS01205 PF07702 UTRA domain RD12_RS01205 PF00392 Bacterial regulatory proteins, gntR family RD12_RS01210 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS01215 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD12_RS01225 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS01230 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RD12_RS01235 PF01743 Poly A polymerase head domain RD12_RS01235 PF12627 Probable RNA and SrmB- binding site of polymerase A RD12_RS01235 PF12626 Polymerase A arginine-rich C-terminus RD12_RS01245 PF00308 Bacterial dnaA protein RD12_RS01250 PF00586 AIR synthase related protein, N-terminal domain RD12_RS01250 PF02769 AIR synthase related protein, C-terminal domain RD12_RS01260 PF01119 DNA mismatch repair protein, C-terminal domain RD12_RS01260 PF08676 MutL C terminal dimerisation domain RD12_RS01265 PF09335 SNARE associated Golgi protein RD12_RS01270 PF11741 AMIN domain RD12_RS01270 PF01520 N-acetylmuramoyl-L-alanine amidase RD12_RS01275 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RD12_RS01280 PF00206 Lyase RD12_RS01280 PF10415 Fumarase C C-terminus RD12_RS01290 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS01295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS01295 PF03466 LysR substrate binding domain RD12_RS01305 PF02515 CoA-transferase family III RD12_RS01310 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS01315 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS01315 PF18158 Adaptive response protein AidB N-terminal domain RD12_RS01315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS01335 PF01654 Cytochrome bd terminal oxidase subunit I RD12_RS01340 PF02322 Cytochrome bd terminal oxidase subunit II RD12_RS01345 PF08173 Membrane bound YbgT-like protein RD12_RS01350 PF00664 ABC transporter transmembrane region RD12_RS01350 PF00005 ABC transporter RD12_RS01355 PF00005 ABC transporter RD12_RS01355 PF00664 ABC transporter transmembrane region RD12_RS01360 PF00156 Phosphoribosyl transferase domain RD12_RS01375 PF13609 Gram-negative porin RD12_RS01400 PF04386 Stringent starvation protein B RD12_RS01405 PF00043 Glutathione S-transferase, C-terminal domain RD12_RS01405 PF02798 Glutathione S-transferase, N-terminal domain RD12_RS01410 PF02167 Cytochrome C1 family RD12_RS01415 PF00032 Cytochrome b(C-terminal)/b6/petD RD12_RS01415 PF00033 Cytochrome b/b6/petB RD12_RS01420 PF00355 Rieske [2Fe-2S] domain RD12_RS01420 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RD12_RS01425 PF01741 Large-conductance mechanosensitive channel, MscL RD12_RS01430 PF01784 NIF3 (NGG1p interacting factor 3) RD12_RS01435 PF13180 PDZ domain RD12_RS01445 PF04299 Putative FMN-binding domain RD12_RS01450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD12_RS01455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS01460 PF07859 alpha/beta hydrolase fold RD12_RS01470 PF00682 HMGL-like RD12_RS01470 PF08502 LeuA allosteric (dimerisation) domain RD12_RS01475 PF12833 Helix-turn-helix domain RD12_RS01480 PF00920 Dehydratase family RD12_RS01485 PF07690 Major Facilitator Superfamily RD12_RS01490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS01490 PF03466 LysR substrate binding domain RD12_RS01500 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RD12_RS01530 PF07859 alpha/beta hydrolase fold RD12_RS01540 PF02653 Branched-chain amino acid transport system / permease component RD12_RS01545 PF02653 Branched-chain amino acid transport system / permease component RD12_RS01545 PF11862 Domain of unknown function (DUF3382) RD12_RS01550 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD12_RS01550 PF00005 ABC transporter RD12_RS01555 PF00005 ABC transporter RD12_RS01570 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS01575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS01575 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS01575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS01580 PF13193 AMP-binding enzyme C-terminal domain RD12_RS01580 PF00501 AMP-binding enzyme RD12_RS01600 PF00202 Aminotransferase class-III RD12_RS01605 PF02581 Thiamine monophosphate synthase RD12_RS01610 PF08543 Phosphomethylpyrimidine kinase RD12_RS01615 PF00301 Rubredoxin RD12_RS01620 PF02622 Uncharacterized ACR, COG1678 RD12_RS01625 PF03652 Holliday junction resolvase RD12_RS01630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD12_RS01630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD12_RS01635 PF01979 Amidohydrolase family RD12_RS01640 PF01553 Acyltransferase RD12_RS01645 PF00149 Calcineurin-like phosphoesterase RD12_RS01655 PF00912 Transglycosylase RD12_RS01670 PF13193 AMP-binding enzyme C-terminal domain RD12_RS01670 PF00501 AMP-binding enzyme RD12_RS01675 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS01690 PF12706 Beta-lactamase superfamily domain RD12_RS01695 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS01715 PF00563 EAL domain RD12_RS01715 PF00990 Diguanylate cyclase, GGDEF domain RD12_RS01715 PF03707 Bacterial signalling protein N terminal repeat RD12_RS01720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD12_RS01720 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD12_RS01725 PF13532 2OG-Fe(II) oxygenase superfamily RD12_RS01730 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA RD12_RS01735 PF04463 Protein of unknown function (DUF523) RD12_RS01740 PF00005 ABC transporter RD12_RS01745 PF01032 FecCD transport family RD12_RS01750 PF01497 Periplasmic binding protein RD12_RS01755 PF05171 Haemin-degrading HemS.ChuX domain RD12_RS01760 PF07715 TonB-dependent Receptor Plug Domain RD12_RS01760 PF04886 PT repeat RD12_RS01760 PF00593 TonB dependent receptor RD12_RS01765 PF16220 Domain of unknown function (DUF4880) RD12_RS01765 PF04773 FecR protein RD12_RS01770 PF08281 Sigma-70, region 4 RD12_RS01770 PF04542 Sigma-70 region 2 RD12_RS01795 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD12_RS01805 PF07729 FCD domain RD12_RS01805 PF00392 Bacterial regulatory proteins, gntR family RD12_RS01825 PF00171 Aldehyde dehydrogenase family RD12_RS01835 PF00175 Oxidoreductase NAD-binding domain RD12_RS01835 PF00970 Oxidoreductase FAD-binding domain RD12_RS01835 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS01860 PF03458 UPF0126 domain RD12_RS01865 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD12_RS01865 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD12_RS01870 PF03372 Endonuclease/Exonuclease/phosphatase family RD12_RS01875 PF00156 Phosphoribosyl transferase domain RD12_RS01880 PF02637 GatB domain RD12_RS01880 PF02934 GatB/GatE catalytic domain RD12_RS01885 PF01425 Amidase RD12_RS01890 PF02686 Glu-tRNAGln amidotransferase C subunit RD12_RS01900 PF04085 rod shape-determining protein MreC RD12_RS01910 PF03717 Penicillin-binding Protein dimerisation domain RD12_RS01910 PF00905 Penicillin binding protein transpeptidase domain RD12_RS01915 PF01098 Cell cycle protein RD12_RS01920 PF02615 Malate/L-lactate dehydrogenase RD12_RS01925 PF00939 Sodium:sulfate symporter transmembrane region RD12_RS01930 PF00440 Bacterial regulatory proteins, tetR family RD12_RS01940 PF00696 Amino acid kinase family RD12_RS01945 PF03180 NLPA lipoprotein RD12_RS01950 PF00578 AhpC/TSA family RD12_RS01955 PF04972 BON domain RD12_RS01960 PF13580 SIS domain RD12_RS01965 PF02021 Uncharacterised protein family UPF0102 RD12_RS01970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD12_RS01975 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD12_RS01975 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD12_RS01995 PF02515 CoA-transferase family III RD12_RS02000 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS02005 PF02515 CoA-transferase family III RD12_RS02025 PF09339 IclR helix-turn-helix domain RD12_RS02030 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS02040 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS02045 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS02045 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD12_RS02045 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD12_RS02050 PF02515 CoA-transferase family III RD12_RS02055 PF00205 Thiamine pyrophosphate enzyme, central domain RD12_RS02055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD12_RS02055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD12_RS02060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS02060 PF03466 LysR substrate binding domain RD12_RS02070 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS02080 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS02090 PF00892 EamA-like transporter family RD12_RS02095 PF01810 LysE type translocator RD12_RS02100 PF12146 Serine aminopeptidase, S33 RD12_RS02115 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RD12_RS02120 PF00535 Glycosyl transferase family 2 RD12_RS02135 PF03616 Sodium/glutamate symporter RD12_RS02145 PF02667 Short chain fatty acid transporter RD12_RS02160 PF00929 Exonuclease RD12_RS02165 PF00873 AcrB/AcrD/AcrF family RD12_RS02185 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS02190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS02190 PF03466 LysR substrate binding domain RD12_RS02195 PF09330 D-lactate dehydrogenase, membrane binding RD12_RS02195 PF01565 FAD binding domain RD12_RS02200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS02200 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS02200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS02205 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS02205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS02205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS02210 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS02215 PF07687 Peptidase dimerisation domain RD12_RS02215 PF01546 Peptidase family M20/M25/M40 RD12_RS02225 PF01042 Endoribonuclease L-PSP RD12_RS02235 PF08240 Alcohol dehydrogenase GroES-like domain RD12_RS02235 PF00107 Zinc-binding dehydrogenase RD12_RS02240 PF03466 LysR substrate binding domain RD12_RS02240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS02245 PF13380 CoA binding domain RD12_RS02245 PF13607 Succinyl-CoA ligase like flavodoxin domain RD12_RS02250 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS02260 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS02265 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RD12_RS02270 PF01380 SIS domain RD12_RS02275 PF01037 Lrp/AsnC ligand binding domain RD12_RS02280 PF00108 Thiolase, N-terminal domain RD12_RS02280 PF02803 Thiolase, C-terminal domain RD12_RS02285 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS02285 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD12_RS02285 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD12_RS02290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS02290 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD12_RS02290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS02290 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS02295 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS02300 PF00583 Acetyltransferase (GNAT) family RD12_RS02300 PF13380 CoA binding domain RD12_RS02300 PF13607 Succinyl-CoA ligase like flavodoxin domain RD12_RS02315 PF01568 Molydopterin dinucleotide binding domain RD12_RS02315 PF00384 Molybdopterin oxidoreductase RD12_RS02330 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RD12_RS02330 PF01488 Shikimate / quinate 5-dehydrogenase RD12_RS02330 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RD12_RS02335 PF03462 PCRF domain RD12_RS02335 PF00472 RF-1 domain RD12_RS02340 PF05175 Methyltransferase small domain RD12_RS02340 PF17827 PrmC N-terminal domain RD12_RS02345 PF00462 Glutaredoxin RD12_RS02350 PF02441 Flavoprotein RD12_RS02355 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS02360 PF09084 NMT1/THI5 like RD12_RS02365 PF00941 FAD binding domain in molybdopterin dehydrogenase RD12_RS02365 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD12_RS02370 PF01799 [2Fe-2S] binding domain RD12_RS02370 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS02375 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD12_RS02375 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD12_RS02395 PF05036 Sporulation related domain RD12_RS02395 PF03330 Lytic transglycolase RD12_RS02400 PF03668 P-loop ATPase protein family RD12_RS02410 PF00034 Cytochrome c RD12_RS02410 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD12_RS02410 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD12_RS02415 PF02603 HPr Serine kinase N terminus RD12_RS02415 PF07475 HPr Serine kinase C-terminal domain RD12_RS02420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RD12_RS02425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RD12_RS02430 PF00005 ABC transporter RD12_RS02450 PF00571 CBS domain RD12_RS02450 PF01380 SIS domain RD12_RS02455 PF01370 NAD dependent epimerase/dehydratase family RD12_RS02455 PF02222 ATP-grasp domain RD12_RS02460 PF07715 TonB-dependent Receptor Plug Domain RD12_RS02460 PF00593 TonB dependent receptor RD12_RS02470 PF00732 GMC oxidoreductase RD12_RS02470 PF05199 GMC oxidoreductase RD12_RS02490 PF02938 GAD domain RD12_RS02490 PF01336 OB-fold nucleic acid binding domain RD12_RS02490 PF00152 tRNA synthetases class II (D, K and N) RD12_RS02495 PF03372 Endonuclease/Exonuclease/phosphatase family RD12_RS02500 PF13091 PLD-like domain RD12_RS02525 PF13458 Periplasmic binding protein RD12_RS02530 PF01425 Amidase RD12_RS02535 PF05995 Cysteine dioxygenase type I RD12_RS02540 PF09339 IclR helix-turn-helix domain RD12_RS02540 PF01614 Bacterial transcriptional regulator RD12_RS02555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD12_RS02555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD12_RS02555 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS02560 PF05275 Copper resistance protein B precursor (CopB) RD12_RS02565 PF07732 Multicopper oxidase RD12_RS02565 PF00394 Multicopper oxidase RD12_RS02565 PF07731 Multicopper oxidase RD12_RS02595 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RD12_RS02595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD12_RS02595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD12_RS02600 PF02515 CoA-transferase family III RD12_RS02605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS02605 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS02605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS02620 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS02625 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS02630 PF01256 Carbohydrate kinase RD12_RS02650 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS02655 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS02655 PF12911 N-terminal TM domain of oligopeptide transport permease C RD12_RS02660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS02660 PF00005 ABC transporter RD12_RS02670 PF07687 Peptidase dimerisation domain RD12_RS02670 PF01546 Peptidase family M20/M25/M40 RD12_RS02680 PF13361 UvrD-like helicase C-terminal domain RD12_RS02680 PF00580 UvrD/REP helicase N-terminal domain RD12_RS02685 PF00270 DEAD/DEAH box helicase RD12_RS02685 PF00271 Helicase conserved C-terminal domain RD12_RS02685 PF18074 Primosomal protein N C-terminal domain RD12_RS02685 PF17764 3′ DNA-binding domain (3′BD) RD12_RS02685 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RD12_RS02690 PF01208 Uroporphyrinogen decarboxylase (URO-D) RD12_RS02700 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RD12_RS02705 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD12_RS02705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD12_RS02710 PF00231 ATP synthase RD12_RS02715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD12_RS02715 PF00306 ATP synthase alpha/beta chain, C terminal domain RD12_RS02715 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD12_RS02720 PF00213 ATP synthase delta (OSCP) subunit RD12_RS02725 PF00430 ATP synthase B/B' CF(0) RD12_RS02730 PF00137 ATP synthase subunit C RD12_RS02735 PF00119 ATP synthase A chain RD12_RS02760 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS02765 PF13180 PDZ domain RD12_RS02765 PF17820 PDZ domain RD12_RS02770 PF13192 Thioredoxin domain RD12_RS02770 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS02780 PF01171 PP-loop family RD12_RS02790 PF01842 ACT domain RD12_RS02790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD12_RS02790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD12_RS02795 PF10411 Disulfide bond isomerase protein N-terminus RD12_RS02795 PF13098 Thioredoxin-like domain RD12_RS02800 PF01494 FAD binding domain RD12_RS02805 PF06725 3D domain RD12_RS02805 PF03562 MltA specific insert domain RD12_RS02810 PF04379 ApaG domain RD12_RS02815 PF00834 Ribulose-phosphate 3 epimerase family RD12_RS02820 PF13419 Haloacid dehalogenase-like hydrolase RD12_RS02825 PF00425 chorismate binding enzyme RD12_RS02825 PF04715 Anthranilate synthase component I, N terminal region RD12_RS02830 PF00117 Glutamine amidotransferase class-I RD12_RS02835 PF00591 Glycosyl transferase family, a/b domain RD12_RS02835 PF02885 Glycosyl transferase family, helical bundle domain RD12_RS02840 PF00218 Indole-3-glycerol phosphate synthase RD12_RS02865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS02865 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS02865 PF18158 Adaptive response protein AidB N-terminal domain RD12_RS02870 PF03466 LysR substrate binding domain RD12_RS02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS02875 PF00551 Formyl transferase RD12_RS02885 PF01613 Flavin reductase like domain RD12_RS02890 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RD12_RS02890 PF01243 Pyridoxamine 5'-phosphate oxidase RD12_RS02900 PF07690 Major Facilitator Superfamily RD12_RS02905 PF00899 ThiF family RD12_RS02910 PF00392 Bacterial regulatory proteins, gntR family RD12_RS02910 PF07702 UTRA domain RD12_RS02915 PF00501 AMP-binding enzyme RD12_RS02915 PF13193 AMP-binding enzyme C-terminal domain RD12_RS02920 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS02935 PF01063 Amino-transferase class IV RD12_RS02940 PF04715 Anthranilate synthase component I, N terminal region RD12_RS02940 PF00425 chorismate binding enzyme RD12_RS02945 PF17760 UvrA interaction domain RD12_RS02945 PF17755 UvrA DNA-binding domain RD12_RS02945 PF00005 ABC transporter RD12_RS02955 PF03466 LysR substrate binding domain RD12_RS02955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS02960 PF00535 Glycosyl transferase family 2 RD12_RS02965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS02970 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS02980 PF12848 ABC transporter RD12_RS02980 PF00005 ABC transporter RD12_RS03000 PF03776 Septum formation topological specificity factor MinE RD12_RS03005 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RD12_RS03010 PF03775 Septum formation inhibitor MinC, C-terminal domain RD12_RS03010 PF05209 Septum formation inhibitor MinC, N-terminal domain RD12_RS03015 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD12_RS03015 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RD12_RS03020 PF01654 Cytochrome bd terminal oxidase subunit I RD12_RS03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS03030 PF02702 Osmosensitive K+ channel His kinase sensor domain RD12_RS03030 PF13493 Domain of unknown function (DUF4118) RD12_RS03035 PF00486 Transcriptional regulatory protein, C terminal RD12_RS03035 PF00072 Response regulator receiver domain RD12_RS03050 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS03055 PF04391 Protein of unknown function (DUF533) RD12_RS03075 PF01476 LysM domain RD12_RS03075 PF01464 Transglycosylase SLT domain RD12_RS03080 PF16123 Hydroxyacylglutathione hydrolase C-terminus RD12_RS03080 PF00753 Metallo-beta-lactamase superfamily RD12_RS03085 PF08241 Methyltransferase domain RD12_RS03090 PF00075 RNase H RD12_RS03135 PF01575 MaoC like domain RD12_RS03140 PF02803 Thiolase, C-terminal domain RD12_RS03140 PF00108 Thiolase, N-terminal domain RD12_RS03150 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS03155 PF00106 short chain dehydrogenase RD12_RS03165 PF00005 ABC transporter RD12_RS03165 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD12_RS03170 PF00005 ABC transporter RD12_RS03175 PF02653 Branched-chain amino acid transport system / permease component RD12_RS03185 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS03185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS03185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS03190 PF00440 Bacterial regulatory proteins, tetR family RD12_RS03190 PF08361 MAATS-type transcriptional repressor, C-terminal region RD12_RS03195 PF14535 AMP-binding enzyme C-terminal domain RD12_RS03195 PF00501 AMP-binding enzyme RD12_RS03200 PF02515 CoA-transferase family III RD12_RS03220 PF04285 Protein of unknown function (DUF444) RD12_RS03225 PF04293 SpoVR like protein RD12_RS03240 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS03245 PF07476 Methylaspartate ammonia-lyase C-terminus RD12_RS03245 PF05034 Methylaspartate ammonia-lyase N-terminus RD12_RS03250 PF07702 UTRA domain RD12_RS03250 PF00392 Bacterial regulatory proteins, gntR family RD12_RS03265 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS03270 PF09278 MerR, DNA binding RD12_RS03270 PF00376 MerR family regulatory protein RD12_RS03275 PF01774 UreD urease accessory protein RD12_RS03280 PF00547 Urease, gamma subunit RD12_RS03285 PF04955 HupE / UreJ protein RD12_RS03290 PF00699 Urease beta subunit RD12_RS03295 PF00449 Urease alpha-subunit, N-terminal domain RD12_RS03295 PF01979 Amidohydrolase family RD12_RS03300 PF05194 UreE urease accessory protein, C-terminal domain RD12_RS03300 PF02814 UreE urease accessory protein, N-terminal domain RD12_RS03305 PF01730 UreF RD12_RS03310 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD12_RS03320 PF07364 Metallopeptidase family M81 RD12_RS03320 PF07171 MlrC C-terminus RD12_RS03330 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS03335 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS03340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS03345 PF00171 Aldehyde dehydrogenase family RD12_RS03350 PF00202 Aminotransferase class-III RD12_RS03355 PF00155 Aminotransferase class I and II RD12_RS03355 PF00392 Bacterial regulatory proteins, gntR family RD12_RS03360 PF00186 Dihydrofolate reductase RD12_RS03365 PF00303 Thymidylate synthase RD12_RS03375 PF03232 Ubiquinone biosynthesis protein COQ7 RD12_RS03380 PF00953 Glycosyl transferase family 4 RD12_RS03385 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD12_RS03385 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD12_RS03385 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD12_RS03390 PF01370 NAD dependent epimerase/dehydratase family RD12_RS03395 PF03023 Lipid II flippase MurJ RD12_RS03400 PF13439 Glycosyltransferase Family 4 RD12_RS03400 PF00534 Glycosyl transferases group 1 RD12_RS03405 PF00733 Asparagine synthase RD12_RS03405 PF13537 Glutamine amidotransferase domain RD12_RS03410 PF13439 Glycosyltransferase Family 4 RD12_RS03410 PF00534 Glycosyl transferases group 1 RD12_RS03415 PF13439 Glycosyltransferase Family 4 RD12_RS03415 PF00534 Glycosyl transferases group 1 RD12_RS03420 PF13477 Glycosyl transferase 4-like RD12_RS03420 PF00534 Glycosyl transferases group 1 RD12_RS03425 PF00342 Phosphoglucose isomerase RD12_RS03430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD12_RS03430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD12_RS03430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD12_RS03430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD12_RS03440 PF02913 FAD linked oxidases, C-terminal domain RD12_RS03440 PF01565 FAD binding domain RD12_RS03445 PF00072 Response regulator receiver domain RD12_RS03445 PF00486 Transcriptional regulatory protein, C terminal RD12_RS03450 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS03450 PF08521 Two-component sensor kinase N-terminal RD12_RS03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS03455 PF00884 Sulfatase RD12_RS03465 PF04209 homogentisate 1,2-dioxygenase RD12_RS03470 PF03466 LysR substrate binding domain RD12_RS03470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS03480 PF01494 FAD binding domain RD12_RS03490 PF06827 Zinc finger found in FPG and IleRS RD12_RS03490 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RD12_RS03490 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RD12_RS03500 PF03550 Outer membrane lipoprotein LolB RD12_RS03505 PF08544 GHMP kinases C terminal RD12_RS03505 PF00288 GHMP kinases N terminal domain RD12_RS03515 PF14572 Phosphoribosyl synthetase-associated domain RD12_RS03515 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RD12_RS03520 PF14693 Ribosomal protein TL5, C-terminal domain RD12_RS03520 PF01386 Ribosomal L25p family RD12_RS03525 PF01195 Peptidyl-tRNA hydrolase RD12_RS03535 PF06071 Protein of unknown function (DUF933) RD12_RS03535 PF01926 50S ribosome-binding GTPase RD12_RS03540 PF13356 Arm DNA-binding domain RD12_RS03540 PF00589 Phage integrase family RD12_RS03555 PF01555 DNA methylase RD12_RS03560 PF13175 AAA ATPase domain RD12_RS03585 PF00580 UvrD/REP helicase N-terminal domain RD12_RS03585 PF13361 UvrD-like helicase C-terminal domain RD12_RS03595 PF12951 Passenger-associated-transport-repeat RD12_RS03605 PF00072 Response regulator receiver domain RD12_RS03605 PF00486 Transcriptional regulatory protein, C terminal RD12_RS03620 PF00440 Bacterial regulatory proteins, tetR family RD12_RS03620 PF17938 Tetracyclin repressor-like, C-terminal domain RD12_RS03645 PF01266 FAD dependent oxidoreductase RD12_RS03660 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS03670 PF01810 LysE type translocator RD12_RS03715 PF00561 alpha/beta hydrolase fold RD12_RS03725 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS03730 PF03459 TOBE domain RD12_RS03730 PF00005 ABC transporter RD12_RS03735 PF13091 PLD-like domain RD12_RS03745 PF03167 Uracil DNA glycosylase superfamily RD12_RS03750 PF00271 Helicase conserved C-terminal domain RD12_RS03750 PF00270 DEAD/DEAH box helicase RD12_RS03760 PF01743 Poly A polymerase head domain RD12_RS03760 PF12627 Probable RNA and SrmB- binding site of polymerase A RD12_RS03765 PF01464 Transglycosylase SLT domain RD12_RS03765 PF14718 Soluble lytic murein transglycosylase L domain RD12_RS03775 PF07690 Major Facilitator Superfamily RD12_RS03775 PF00083 Sugar (and other) transporter RD12_RS03780 PF00850 Histone deacetylase domain RD12_RS03785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS03785 PF03466 LysR substrate binding domain RD12_RS03795 PF02219 Methylenetetrahydrofolate reductase RD12_RS03800 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RD12_RS03805 PF05221 S-adenosyl-L-homocysteine hydrolase RD12_RS03805 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RD12_RS03810 PF00534 Glycosyl transferases group 1 RD12_RS03810 PF13439 Glycosyltransferase Family 4 RD12_RS03820 PF02773 S-adenosylmethionine synthetase, C-terminal domain RD12_RS03820 PF02772 S-adenosylmethionine synthetase, central domain RD12_RS03820 PF00438 S-adenosylmethionine synthetase, N-terminal domain RD12_RS03830 PF03279 Bacterial lipid A biosynthesis acyltransferase RD12_RS03835 PF01678 Diaminopimelate epimerase RD12_RS03845 PF00589 Phage integrase family RD12_RS03845 PF02899 Phage integrase, N-terminal SAM-like domain RD12_RS03850 PF00593 TonB dependent receptor RD12_RS03850 PF07715 TonB-dependent Receptor Plug Domain RD12_RS03855 PF03824 High-affinity nickel-transport protein RD12_RS03865 PF01297 Zinc-uptake complex component A periplasmic RD12_RS03870 PF00950 ABC 3 transport family RD12_RS03875 PF00005 ABC transporter RD12_RS03885 PF01475 Ferric uptake regulator family RD12_RS03890 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD12_RS03890 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD12_RS03895 PF01258 Prokaryotic dksA/traR C4-type zinc finger RD12_RS03900 PF00227 Proteasome subunit RD12_RS03905 PF07724 AAA domain (Cdc48 subfamily) RD12_RS03905 PF00004 ATPase family associated with various cellular activities (AAA) RD12_RS03905 PF10431 C-terminal, D2-small domain, of ClpB protein RD12_RS03915 PF01923 Cobalamin adenosyltransferase RD12_RS03925 PF02525 Flavodoxin-like fold RD12_RS03930 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD12_RS03930 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD12_RS03940 PF01970 Tripartite tricarboxylate transporter TctA family RD12_RS03980 PF01790 Prolipoprotein diacylglyceryl transferase RD12_RS03985 PF00920 Dehydratase family RD12_RS03990 PF00034 Cytochrome c RD12_RS03995 PF01625 Peptide methionine sulfoxide reductase RD12_RS04000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD12_RS04005 PF01037 Lrp/AsnC ligand binding domain RD12_RS04045 PF07687 Peptidase dimerisation domain RD12_RS04045 PF01546 Peptidase family M20/M25/M40 RD12_RS04050 PF01979 Amidohydrolase family RD12_RS04055 PF16326 ABC transporter C-terminal domain RD12_RS04055 PF00005 ABC transporter RD12_RS04055 PF12848 ABC transporter RD12_RS04065 PF02381 MraZ protein, putative antitoxin-like RD12_RS04070 PF01795 MraW methylase family RD12_RS04075 PF04999 Cell division protein FtsL RD12_RS04080 PF00905 Penicillin binding protein transpeptidase domain RD12_RS04080 PF03717 Penicillin-binding Protein dimerisation domain RD12_RS04085 PF02875 Mur ligase family, glutamate ligase domain RD12_RS04085 PF08245 Mur ligase middle domain RD12_RS04090 PF00953 Glycosyl transferase family 4 RD12_RS04095 PF08245 Mur ligase middle domain RD12_RS04095 PF02875 Mur ligase family, glutamate ligase domain RD12_RS04100 PF01098 Cell cycle protein RD12_RS04105 PF03033 Glycosyltransferase family 28 N-terminal domain RD12_RS04105 PF04101 Glycosyltransferase family 28 C-terminal domain RD12_RS04110 PF02875 Mur ligase family, glutamate ligase domain RD12_RS04110 PF01225 Mur ligase family, catalytic domain RD12_RS04110 PF08245 Mur ligase middle domain RD12_RS04115 PF01820 D-ala D-ala ligase N-terminus RD12_RS04115 PF07478 D-ala D-ala ligase C-terminus RD12_RS04120 PF03799 Cell division protein FtsQ RD12_RS04120 PF08478 POTRA domain, FtsQ-type RD12_RS04125 PF02491 SHS2 domain inserted in FTSA RD12_RS04130 PF00091 Tubulin/FtsZ family, GTPase domain RD12_RS04130 PF12327 FtsZ family, C-terminal domain RD12_RS04135 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RD12_RS04145 PF01551 Peptidase family M23 RD12_RS04145 PF08525 Opacity-associated protein A N-terminal motif RD12_RS04145 PF01476 LysM domain RD12_RS04150 PF07517 SecA DEAD-like domain RD12_RS04150 PF01043 SecA preprotein cross-linking domain RD12_RS04150 PF07516 SecA Wing and Scaffold domain RD12_RS04150 PF02810 SEC-C motif RD12_RS04160 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS04170 PF00106 short chain dehydrogenase RD12_RS04175 PF01266 FAD dependent oxidoreductase RD12_RS04180 PF01037 Lrp/AsnC ligand binding domain RD12_RS04190 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RD12_RS04200 PF08501 Shikimate dehydrogenase substrate binding domain RD12_RS04200 PF01488 Shikimate / quinate 5-dehydrogenase RD12_RS04200 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RD12_RS04210 PF00773 RNB domain RD12_RS04215 PF05728 Uncharacterised protein family (UPF0227) RD12_RS04220 PF02875 Mur ligase family, glutamate ligase domain RD12_RS04220 PF01225 Mur ligase family, catalytic domain RD12_RS04220 PF08245 Mur ligase middle domain RD12_RS04225 PF08534 Redoxin RD12_RS04230 PF01220 Dehydroquinase class II RD12_RS04235 PF00364 Biotin-requiring enzyme RD12_RS04240 PF02785 Biotin carboxylase C-terminal domain RD12_RS04240 PF00289 Biotin carboxylase, N-terminal domain RD12_RS04240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD12_RS04255 PF00294 pfkB family carbohydrate kinase RD12_RS04280 PF03062 MBOAT, membrane-bound O-acyltransferase family RD12_RS04285 PF13193 AMP-binding enzyme C-terminal domain RD12_RS04285 PF00501 AMP-binding enzyme RD12_RS04300 PF00268 Ribonucleotide reductase, small chain RD12_RS04305 PF03477 ATP cone domain RD12_RS04305 PF02867 Ribonucleotide reductase, barrel domain RD12_RS04305 PF00317 Ribonucleotide reductase, all-alpha domain RD12_RS04320 PF01037 Lrp/AsnC ligand binding domain RD12_RS04335 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD12_RS04340 PF13607 Succinyl-CoA ligase like flavodoxin domain RD12_RS04340 PF13380 CoA binding domain RD12_RS04340 PF00583 Acetyltransferase (GNAT) family RD12_RS04350 PF00392 Bacterial regulatory proteins, gntR family RD12_RS04350 PF07729 FCD domain RD12_RS04360 PF00270 DEAD/DEAH box helicase RD12_RS04360 PF03880 DbpA RNA binding domain RD12_RS04360 PF00271 Helicase conserved C-terminal domain RD12_RS04365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD12_RS04370 PF00857 Isochorismatase family RD12_RS04375 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS04380 PF00005 ABC transporter RD12_RS04390 PF02230 Phospholipase/Carboxylesterase RD12_RS04395 PF04751 Protein of unknown function (DUF615) RD12_RS04400 PF01523 Putative modulator of DNA gyrase RD12_RS04405 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS04410 PF00572 Ribosomal protein L13 RD12_RS04415 PF00380 Ribosomal protein S9/S16 RD12_RS04420 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD12_RS04420 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD12_RS04430 PF01521 Iron-sulphur cluster biosynthesis RD12_RS04435 PF03702 Anhydro-N-acetylmuramic acid kinase RD12_RS04440 PF01551 Peptidase family M23 RD12_RS04440 PF08460 Bacterial SH3 domain RD12_RS04455 PF00579 tRNA synthetases class I (W and Y) RD12_RS04455 PF01479 S4 domain RD12_RS04465 PF00464 Serine hydroxymethyltransferase RD12_RS04470 PF03477 ATP cone domain RD12_RS04485 PF01872 RibD C-terminal domain RD12_RS04485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD12_RS04500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS04500 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS04500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS04500 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS04500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS04500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS04510 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS04515 PF03466 LysR substrate binding domain RD12_RS04515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS04520 PF02515 CoA-transferase family III RD12_RS04540 PF05726 Pirin C-terminal cupin domain RD12_RS04540 PF02678 Pirin RD12_RS04555 PF00072 Response regulator receiver domain RD12_RS04560 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD12_RS04560 PF06481 COX Aromatic Rich Motif RD12_RS04565 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD12_RS04570 PF00510 Cytochrome c oxidase subunit III RD12_RS04575 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD12_RS04580 PF01022 Bacterial regulatory protein, arsR family RD12_RS04600 PF05114 Protein of unknown function (DUF692) RD12_RS04615 PF00593 TonB dependent receptor RD12_RS04615 PF07715 TonB-dependent Receptor Plug Domain RD12_RS04630 PF01476 LysM domain RD12_RS04630 PF01551 Peptidase family M23 RD12_RS04645 PF04461 Protein of unknown function (DUF520) RD12_RS04655 PF08281 Sigma-70, region 4 RD12_RS04655 PF04542 Sigma-70 region 2 RD12_RS04675 PF00795 Carbon-nitrogen hydrolase RD12_RS04680 PF01523 Putative modulator of DNA gyrase RD12_RS04685 PF00793 DAHP synthetase I family RD12_RS04690 PF05860 haemagglutination activity domain RD12_RS04690 PF13332 Hemagglutinin repeat RD12_RS04690 PF05594 Haemagluttinin repeat RD12_RS04690 PF13018 Extended Signal Peptide of Type V secretion system RD12_RS04690 PF13332 Hemagglutinin repeat RD12_RS04690 PF05594 Haemagluttinin repeat RD12_RS04690 PF13018 Extended Signal Peptide of Type V secretion system RD12_RS04690 PF05860 haemagglutination activity domain RD12_RS04695 PF01565 FAD binding domain RD12_RS04695 PF02913 FAD linked oxidases, C-terminal domain RD12_RS04700 PF01565 FAD binding domain RD12_RS04700 PF02913 FAD linked oxidases, C-terminal domain RD12_RS04705 PF01565 FAD binding domain RD12_RS04710 PF13183 4Fe-4S dicluster domain RD12_RS04710 PF02754 Cysteine-rich domain RD12_RS04715 PF00756 Putative esterase RD12_RS04720 PF07715 TonB-dependent Receptor Plug Domain RD12_RS04720 PF00593 TonB dependent receptor RD12_RS04730 PF02233 NAD(P) transhydrogenase beta subunit RD12_RS04735 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RD12_RS04735 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RD12_RS04745 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS04750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS04750 PF03466 LysR substrate binding domain RD12_RS04760 PF01925 Sulfite exporter TauE/SafE RD12_RS04765 PF13417 Glutathione S-transferase, N-terminal domain RD12_RS04765 PF00043 Glutathione S-transferase, C-terminal domain RD12_RS04770 PF08328 Adenylosuccinate lyase C-terminal RD12_RS04770 PF00206 Lyase RD12_RS04775 PF01322 Cytochrome C' RD12_RS04795 PF01594 AI-2E family transporter RD12_RS04805 PF07729 FCD domain RD12_RS04805 PF00392 Bacterial regulatory proteins, gntR family RD12_RS04815 PF01425 Amidase RD12_RS04820 PF02515 CoA-transferase family III RD12_RS04825 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS04840 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS04845 PF00005 ABC transporter RD12_RS04860 PF09339 IclR helix-turn-helix domain RD12_RS04860 PF01614 Bacterial transcriptional regulator RD12_RS04870 PF13193 AMP-binding enzyme C-terminal domain RD12_RS04870 PF00501 AMP-binding enzyme RD12_RS04875 PF01042 Endoribonuclease L-PSP RD12_RS04880 PF02653 Branched-chain amino acid transport system / permease component RD12_RS04895 PF00005 ABC transporter RD12_RS04900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD12_RS04915 PF03466 LysR substrate binding domain RD12_RS04915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS04925 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD12_RS04930 PF07690 Major Facilitator Superfamily RD12_RS04935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS04935 PF03466 LysR substrate binding domain RD12_RS04950 PF01425 Amidase RD12_RS04955 PF00677 Lumazine binding domain RD12_RS04960 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS04965 PF13404 AsnC-type helix-turn-helix domain RD12_RS04965 PF01037 Lrp/AsnC ligand binding domain RD12_RS04975 PF00501 AMP-binding enzyme RD12_RS04975 PF13193 AMP-binding enzyme C-terminal domain RD12_RS04985 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS04990 PF00005 ABC transporter RD12_RS05005 PF08240 Alcohol dehydrogenase GroES-like domain RD12_RS05005 PF00107 Zinc-binding dehydrogenase RD12_RS05030 PF00403 Heavy-metal-associated domain RD12_RS05035 PF01966 HD domain RD12_RS05040 PF00155 Aminotransferase class I and II RD12_RS05045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS05045 PF03466 LysR substrate binding domain RD12_RS05055 PF00083 Sugar (and other) transporter RD12_RS05075 PF13609 Gram-negative porin RD12_RS05080 PF02548 Ketopantoate hydroxymethyltransferase RD12_RS05085 PF03466 LysR substrate binding domain RD12_RS05085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS05130 PF00440 Bacterial regulatory proteins, tetR family RD12_RS05140 PF05170 AsmA family RD12_RS05145 PF03352 Methyladenine glycosylase RD12_RS05150 PF00376 MerR family regulatory protein RD12_RS05150 PF09278 MerR, DNA binding RD12_RS05165 PF01547 Bacterial extracellular solute-binding protein RD12_RS05175 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS05175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD12_RS05180 PF00005 ABC transporter RD12_RS05180 PF08402 TOBE domain RD12_RS05185 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS05190 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS05190 PF14785 Maltose transport system permease protein MalF P2 domain RD12_RS05215 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS05220 PF00392 Bacterial regulatory proteins, gntR family RD12_RS05220 PF07729 FCD domain RD12_RS05245 PF00465 Iron-containing alcohol dehydrogenase RD12_RS05260 PF03180 NLPA lipoprotein RD12_RS05265 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS05270 PF09383 NIL domain RD12_RS05270 PF00005 ABC transporter RD12_RS05275 PF13802 Galactose mutarotase-like RD12_RS05275 PF01055 Glycosyl hydrolases family 31 RD12_RS05285 PF00459 Inositol monophosphatase family RD12_RS05295 PF13193 AMP-binding enzyme C-terminal domain RD12_RS05295 PF00501 AMP-binding enzyme RD12_RS05300 PF07687 Peptidase dimerisation domain RD12_RS05300 PF01546 Peptidase family M20/M25/M40 RD12_RS05305 PF03466 LysR substrate binding domain RD12_RS05305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS05310 PF03601 Conserved hypothetical protein 698 RD12_RS05315 PF03061 Thioesterase superfamily RD12_RS05320 PF03448 MgtE intracellular N domain RD12_RS05320 PF00571 CBS domain RD12_RS05320 PF01769 Divalent cation transporter RD12_RS05340 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS05350 PF02609 Exonuclease VII small subunit RD12_RS05355 PF00348 Polyprenyl synthetase RD12_RS05360 PF02780 Transketolase, C-terminal domain RD12_RS05360 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RD12_RS05360 PF02779 Transketolase, pyrimidine binding domain RD12_RS05365 PF02649 Type I GTP cyclohydrolase folE2 RD12_RS05370 PF01250 Ribosomal protein S6 RD12_RS05380 PF01084 Ribosomal protein S18 RD12_RS05385 PF01281 Ribosomal protein L9, N-terminal domain RD12_RS05385 PF03948 Ribosomal protein L9, C-terminal domain RD12_RS05395 PF00772 DnaB-like helicase N terminal domain RD12_RS05395 PF03796 DnaB-like helicase C terminal domain RD12_RS05400 PF13593 SBF-like CPA transporter family (DUF4137) RD12_RS05405 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD12_RS05410 PF13638 PIN domain RD12_RS05410 PF02562 PhoH-like protein RD12_RS05415 PF00578 AhpC/TSA family RD12_RS05420 PF04430 Protein of unknown function (DUF498/DUF598) RD12_RS05425 PF00155 Aminotransferase class I and II RD12_RS05430 PF03447 Homoserine dehydrogenase, NAD binding domain RD12_RS05430 PF01842 ACT domain RD12_RS05430 PF00742 Homoserine dehydrogenase RD12_RS05435 PF00291 Pyridoxal-phosphate dependent enzyme RD12_RS05435 PF14821 Threonine synthase N terminus RD12_RS05450 PF02615 Malate/L-lactate dehydrogenase RD12_RS05460 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS05475 PF03328 HpcH/HpaI aldolase/citrate lyase family RD12_RS05480 PF01649 Ribosomal protein S20 RD12_RS05490 PF03023 Lipid II flippase MurJ RD12_RS05495 PF00106 short chain dehydrogenase RD12_RS05500 PF05191 Adenylate kinase, active site lid RD12_RS05505 PF02348 Cytidylyltransferase RD12_RS05510 PF03966 Trm112p-like protein RD12_RS05515 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RD12_RS05520 PF02472 Biopolymer transport protein ExbD/TolR RD12_RS05525 PF01618 MotA/TolQ/ExbB proton channel family RD12_RS05535 PF02601 Exonuclease VII, large subunit RD12_RS05535 PF13742 OB-fold nucleic acid binding domain RD12_RS05540 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD12_RS05540 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD12_RS05545 PF00654 Voltage gated chloride channel RD12_RS05550 PF00108 Thiolase, N-terminal domain RD12_RS05550 PF02803 Thiolase, C-terminal domain RD12_RS05560 PF00313 'Cold-shock' DNA-binding domain RD12_RS05565 PF02617 ATP-dependent Clp protease adaptor protein ClpS RD12_RS05570 PF00207 Alpha-2-macroglobulin family RD12_RS05570 PF07703 Alpha-2-macroglobulin bait region domain RD12_RS05570 PF17962 Bacterial macroglobulin domain 6 RD12_RS05570 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RD12_RS05570 PF01835 MG2 domain RD12_RS05570 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RD12_RS05570 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RD12_RS05570 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RD12_RS05575 PF00912 Transglycosylase RD12_RS05575 PF06832 Penicillin-Binding Protein C-terminus Family RD12_RS05575 PF00905 Penicillin binding protein transpeptidase domain RD12_RS05580 PF00004 ATPase family associated with various cellular activities (AAA) RD12_RS05580 PF07724 AAA domain (Cdc48 subfamily) RD12_RS05580 PF17871 AAA lid domain RD12_RS05580 PF02861 Clp amino terminal domain, pathogenicity island component RD12_RS05580 PF10431 C-terminal, D2-small domain, of ClpB protein RD12_RS05585 PF04403 Paraquat-inducible protein A RD12_RS05590 PF02470 MlaD protein RD12_RS05600 PF00171 Aldehyde dehydrogenase family RD12_RS05600 PF01619 Proline dehydrogenase RD12_RS05600 PF14850 DNA-binding domain of Proline dehydrogenase RD12_RS05600 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RD12_RS05610 PF13458 Periplasmic binding protein RD12_RS05615 PF02653 Branched-chain amino acid transport system / permease component RD12_RS05620 PF11862 Domain of unknown function (DUF3382) RD12_RS05620 PF02653 Branched-chain amino acid transport system / permease component RD12_RS05625 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD12_RS05625 PF00005 ABC transporter RD12_RS05630 PF00005 ABC transporter RD12_RS05635 PF07690 Major Facilitator Superfamily RD12_RS05640 PF00440 Bacterial regulatory proteins, tetR family RD12_RS05650 PF03212 Pertactin RD12_RS05650 PF03797 Autotransporter beta-domain RD12_RS05660 PF00543 Nitrogen regulatory protein P-II RD12_RS05665 PF04380 Membrane fusogenic activity RD12_RS05680 PF00083 Sugar (and other) transporter RD12_RS05680 PF07690 Major Facilitator Superfamily RD12_RS05690 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD12_RS05695 PF00510 Cytochrome c oxidase subunit III RD12_RS05700 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD12_RS05705 PF02104 SURF1 family RD12_RS05730 PF13411 MerR HTH family regulatory protein RD12_RS05735 PF00403 Heavy-metal-associated domain RD12_RS05755 PF06968 Biotin and Thiamin Synthesis associated domain RD12_RS05755 PF04055 Radical SAM superfamily RD12_RS05770 PF08534 Redoxin RD12_RS05780 PF01738 Dienelactone hydrolase family RD12_RS05790 PF01967 MoaC family RD12_RS05800 PF02391 MoaE protein RD12_RS05805 PF00994 Probable molybdopterin binding domain RD12_RS05810 PF03454 MoeA C-terminal region (domain IV) RD12_RS05810 PF00994 Probable molybdopterin binding domain RD12_RS05810 PF03453 MoeA N-terminal region (domain I and II) RD12_RS05815 PF06463 Molybdenum Cofactor Synthesis C RD12_RS05815 PF04055 Radical SAM superfamily RD12_RS05835 PF14698 Argininosuccinate lyase C-terminal RD12_RS05835 PF00206 Lyase RD12_RS05840 PF00924 Mechanosensitive ion channel RD12_RS05845 PF02540 NAD synthase RD12_RS05845 PF00795 Carbon-nitrogen hydrolase RD12_RS05850 PF00543 Nitrogen regulatory protein P-II RD12_RS05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS05875 PF03466 LysR substrate binding domain RD12_RS05885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS05890 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS05895 PF12911 N-terminal TM domain of oligopeptide transport permease C RD12_RS05895 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS05900 PF03193 RsgA GTPase RD12_RS05905 PF01435 Peptidase family M48 RD12_RS05910 PF00929 Exonuclease RD12_RS05915 PF03853 YjeF-related protein N-terminus RD12_RS05920 PF07848 PaaX-like protein RD12_RS05920 PF08223 PaaX-like protein C-terminal domain RD12_RS05925 PF05138 Phenylacetic acid catabolic protein RD12_RS05930 PF06243 Phenylacetic acid degradation B RD12_RS05935 PF05138 Phenylacetic acid catabolic protein RD12_RS05940 PF01883 Iron-sulfur cluster assembly protein RD12_RS05945 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS05945 PF00175 Oxidoreductase NAD-binding domain RD12_RS05945 PF00970 Oxidoreductase FAD-binding domain RD12_RS05955 PF00171 Aldehyde dehydrogenase family RD12_RS05960 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS05965 PF03061 Thioesterase superfamily RD12_RS05970 PF14535 AMP-binding enzyme C-terminal domain RD12_RS05970 PF00501 AMP-binding enzyme RD12_RS05975 PF16970 Type-1 fimbrial protein, A RD12_RS05990 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS05995 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD12_RS05995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD12_RS06000 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD12_RS06005 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RD12_RS06005 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RD12_RS06005 PF02769 AIR synthase related protein, C-terminal domain RD12_RS06010 PF13018 Extended Signal Peptide of Type V secretion system RD12_RS06010 PF05594 Haemagluttinin repeat RD12_RS06010 PF13332 Hemagglutinin repeat RD12_RS06010 PF05860 haemagglutination activity domain RD12_RS06035 PF00596 Class II Aldolase and Adducin N-terminal domain RD12_RS06040 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS06045 PF01242 6-pyruvoyl tetrahydropterin synthase RD12_RS06055 PF00472 RF-1 domain RD12_RS06075 PF00701 Dihydrodipicolinate synthetase family RD12_RS06080 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS06105 PF14537 Cytochrome c3 RD12_RS06105 PF00890 FAD binding domain RD12_RS06110 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS06125 PF01266 FAD dependent oxidoreductase RD12_RS06125 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RD12_RS06130 PF08220 DeoR-like helix-turn-helix domain RD12_RS06130 PF00455 DeoR C terminal sensor domain RD12_RS06135 PF17912 MalK OB fold domain RD12_RS06135 PF00005 ABC transporter RD12_RS06140 PF00005 ABC transporter RD12_RS06140 PF17912 MalK OB fold domain RD12_RS06150 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS06175 PF01037 Lrp/AsnC ligand binding domain RD12_RS06180 PF01266 FAD dependent oxidoreductase RD12_RS06185 PF12320 Type 5 capsule protein repressor C-terminal domain RD12_RS06185 PF00149 Calcineurin-like phosphoesterase RD12_RS06210 PF00196 Bacterial regulatory proteins, luxR family RD12_RS06210 PF00072 Response regulator receiver domain RD12_RS06230 PF00478 IMP dehydrogenase / GMP reductase domain RD12_RS06230 PF00571 CBS domain RD12_RS06235 PF00117 Glutamine amidotransferase class-I RD12_RS06235 PF02540 NAD synthase RD12_RS06235 PF00958 GMP synthase C terminal domain RD12_RS06245 PF13657 HipA N-terminal domain RD12_RS06245 PF07804 HipA-like C-terminal domain RD12_RS06255 PF07690 Major Facilitator Superfamily RD12_RS06270 PF01979 Amidohydrolase family RD12_RS06280 PF00005 ABC transporter RD12_RS06285 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS06310 PF01965 DJ-1/PfpI family RD12_RS06315 PF01740 STAS domain RD12_RS06315 PF00916 Sulfate permease family RD12_RS06320 PF10996 Beta-Casp domain RD12_RS06320 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RD12_RS06320 PF00753 Metallo-beta-lactamase superfamily RD12_RS06335 PF12706 Beta-lactamase superfamily domain RD12_RS06340 PF01965 DJ-1/PfpI family RD12_RS06340 PF12833 Helix-turn-helix domain RD12_RS06345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS06345 PF03466 LysR substrate binding domain RD12_RS06360 PF00107 Zinc-binding dehydrogenase RD12_RS06360 PF08240 Alcohol dehydrogenase GroES-like domain RD12_RS06365 PF07690 Major Facilitator Superfamily RD12_RS06370 PF00155 Aminotransferase class I and II RD12_RS06370 PF00392 Bacterial regulatory proteins, gntR family RD12_RS06380 PF01810 LysE type translocator RD12_RS06390 PF01546 Peptidase family M20/M25/M40 RD12_RS06390 PF07687 Peptidase dimerisation domain RD12_RS06395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS06400 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS06405 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS06405 PF12911 N-terminal TM domain of oligopeptide transport permease C RD12_RS06410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS06410 PF00005 ABC transporter RD12_RS06415 PF00356 Bacterial regulatory proteins, lacI family RD12_RS06440 PF09335 SNARE associated Golgi protein RD12_RS06450 PF13847 Methyltransferase domain RD12_RS06460 PF02592 Putative vitamin uptake transporter RD12_RS06465 PF03807 NADP oxidoreductase coenzyme F420-dependent RD12_RS06465 PF14748 Pyrroline-5-carboxylate reductase dimerisation RD12_RS06470 PF13416 Bacterial extracellular solute-binding protein RD12_RS06475 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS06480 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS06485 PF17912 MalK OB fold domain RD12_RS06485 PF00005 ABC transporter RD12_RS06490 PF13458 Periplasmic binding protein RD12_RS06510 PF04241 Protein of unknown function (DUF423) RD12_RS06520 PF08808 RES domain RD12_RS06525 PF03180 NLPA lipoprotein RD12_RS06530 PF01070 FMN-dependent dehydrogenase RD12_RS06535 PF02666 Phosphatidylserine decarboxylase RD12_RS06550 PF10437 Bacterial lipoate protein ligase C-terminus RD12_RS06550 PF03099 Biotin/lipoate A/B protein ligase family RD12_RS06565 PF02798 Glutathione S-transferase, N-terminal domain RD12_RS06565 PF00043 Glutathione S-transferase, C-terminal domain RD12_RS06570 PF00255 Glutathione peroxidase RD12_RS06590 PF02515 CoA-transferase family III RD12_RS06595 PF03960 ArsC family RD12_RS06600 PF00578 AhpC/TSA family RD12_RS06620 PF07681 DoxX RD12_RS06625 PF01447 Thermolysin metallopeptidase, catalytic domain RD12_RS06625 PF02868 Thermolysin metallopeptidase, alpha-helical domain RD12_RS06625 PF16485 Protealysin propeptide RD12_RS06635 PF00248 Aldo/keto reductase family RD12_RS06640 PF00582 Universal stress protein family RD12_RS06655 PF00392 Bacterial regulatory proteins, gntR family RD12_RS06655 PF00155 Aminotransferase class I and II RD12_RS06660 PF01168 Alanine racemase, N-terminal domain RD12_RS06665 PF08543 Phosphomethylpyrimidine kinase RD12_RS06675 PF00128 Alpha amylase, catalytic domain RD12_RS06680 PF02446 4-alpha-glucanotransferase RD12_RS06690 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD12_RS06690 PF00128 Alpha amylase, catalytic domain RD12_RS06690 PF11941 Domain of unknown function (DUF3459) RD12_RS06695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD12_RS06695 PF00128 Alpha amylase, catalytic domain RD12_RS06700 PF02806 Alpha amylase, C-terminal all-beta domain RD12_RS06700 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD12_RS06700 PF00128 Alpha amylase, catalytic domain RD12_RS06705 PF00128 Alpha amylase, catalytic domain RD12_RS06705 PF16657 Maltogenic Amylase, C-terminal domain RD12_RS06710 PF00128 Alpha amylase, catalytic domain RD12_RS06710 PF11896 Domain of unknown function (DUF3416) RD12_RS06740 PF03706 Lysylphosphatidylglycerol synthase TM region RD12_RS06755 PF13091 PLD-like domain RD12_RS06760 PF03372 Endonuclease/Exonuclease/phosphatase family RD12_RS06765 PF03551 Transcriptional regulator PadR-like family RD12_RS06775 PF12951 Passenger-associated-transport-repeat RD12_RS06785 PF03466 LysR substrate binding domain RD12_RS06785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS06795 PF03328 HpcH/HpaI aldolase/citrate lyase family RD12_RS06800 PF07729 FCD domain RD12_RS06800 PF00392 Bacterial regulatory proteins, gntR family RD12_RS06805 PF13380 CoA binding domain RD12_RS06805 PF13607 Succinyl-CoA ligase like flavodoxin domain RD12_RS06810 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS06820 PF02515 CoA-transferase family III RD12_RS06825 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS06830 PF00356 Bacterial regulatory proteins, lacI family RD12_RS06835 PF00694 Aconitase C-terminal domain RD12_RS06845 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS06850 PF13378 Enolase C-terminal domain-like RD12_RS06855 PF02558 Ketopantoate reductase PanE/ApbA RD12_RS06855 PF08546 Ketopantoate reductase PanE/ApbA C terminal RD12_RS06865 PF00005 ABC transporter RD12_RS06870 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS06875 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS06885 PF01312 FlhB HrpN YscU SpaS Family RD12_RS06895 PF00448 SRP54-type protein, GTPase domain RD12_RS06905 PF04316 Anti-sigma-28 factor, FlgM RD12_RS06915 PF00460 Flagella basal body rod protein RD12_RS06920 PF00460 Flagella basal body rod protein RD12_RS06920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD12_RS06925 PF03963 Flagellar hook capping protein - N-terminal region RD12_RS06925 PF13860 FlgD Ig-like domain RD12_RS06925 PF13861 FlgD Tudor-like domain RD12_RS06930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD12_RS06930 PF07559 Flagellar basal body protein FlaE RD12_RS06930 PF00460 Flagella basal body rod protein RD12_RS06935 PF00460 Flagella basal body rod protein RD12_RS06935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD12_RS06940 PF00460 Flagella basal body rod protein RD12_RS06940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD12_RS06945 PF02107 Flagellar L-ring protein RD12_RS06950 PF02119 Flagellar P-ring protein RD12_RS06955 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RD12_RS06955 PF10135 Rod binding protein RD12_RS06960 PF00460 Flagella basal body rod protein RD12_RS06960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD12_RS06965 PF00669 Bacterial flagellin N-terminal helical region RD12_RS06970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD12_RS06970 PF02203 Tar ligand binding domain homologue RD12_RS06970 PF00672 HAMP domain RD12_RS06975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD12_RS06975 PF00672 HAMP domain RD12_RS06975 PF02203 Tar ligand binding domain homologue RD12_RS06980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD12_RS06980 PF08447 PAS fold RD12_RS06990 PF01311 Bacterial export proteins, family 1 RD12_RS06995 PF01313 Bacterial export proteins, family 3 RD12_RS07000 PF00813 FliP family RD12_RS07005 PF04347 Flagellar biosynthesis protein, FliO RD12_RS07010 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD12_RS07010 PF16973 Flagellar motor switch protein FliN N-terminal RD12_RS07015 PF02154 Flagellar motor switch protein FliM RD12_RS07015 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD12_RS07020 PF03748 Flagellar basal body-associated protein FliL RD12_RS07045 PF18269 T3SS EscN ATPase C-terminal domain RD12_RS07045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD12_RS07055 PF14842 FliG N-terminal domain RD12_RS07055 PF01706 FliG C-terminal domain RD12_RS07055 PF14841 FliG middle domain RD12_RS07060 PF08345 Flagellar M-ring protein C-terminal RD12_RS07060 PF01514 Secretory protein of YscJ/FliF family RD12_RS07065 PF02049 Flagellar hook-basal body complex protein FliE RD12_RS07075 PF01312 FlhB HrpN YscU SpaS Family RD12_RS07100 PF02561 Flagellar protein FliS RD12_RS07105 PF02465 Flagellar hook-associated protein 2 N-terminus RD12_RS07105 PF07196 Flagellin hook IN motif RD12_RS07105 PF07195 Flagellar hook-associated protein 2 C-terminus RD12_RS07115 PF02875 Mur ligase family, glutamate ligase domain RD12_RS07115 PF08245 Mur ligase middle domain RD12_RS07130 PF00156 Phosphoribosyl transferase domain RD12_RS07145 PF01909 Nucleotidyltransferase domain RD12_RS07145 PF01966 HD domain RD12_RS07145 PF08335 GlnD PII-uridylyltransferase RD12_RS07150 PF00557 Metallopeptidase family M24 RD12_RS07155 PF00318 Ribosomal protein S2 RD12_RS07160 PF00889 Elongation factor TS RD12_RS07165 PF00696 Amino acid kinase family RD12_RS07170 PF01765 Ribosome recycling factor RD12_RS07175 PF01255 Putative undecaprenyl diphosphate synthase RD12_RS07185 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RD12_RS07185 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RD12_RS07185 PF13288 DXP reductoisomerase C-terminal domain RD12_RS07190 PF02163 Peptidase family M50 RD12_RS07190 PF17820 PDZ domain RD12_RS07195 PF07244 Surface antigen variable number repeat RD12_RS07195 PF01103 Surface antigen RD12_RS07200 PF03938 Outer membrane protein (OmpH-like) RD12_RS07205 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RD12_RS07205 PF00132 Bacterial transferase hexapeptide (six repeats) RD12_RS07210 PF07977 FabA-like domain RD12_RS07215 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RD12_RS07215 PF00132 Bacterial transferase hexapeptide (six repeats) RD12_RS07220 PF02684 Lipid-A-disaccharide synthetase RD12_RS07225 PF01351 Ribonuclease HII RD12_RS07230 PF00588 SpoU rRNA Methylase family RD12_RS07230 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD12_RS07235 PF03618 Kinase/pyrophosphorylase RD12_RS07240 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RD12_RS07240 PF00391 PEP-utilising enzyme, mobile domain RD12_RS07240 PF02896 PEP-utilising enzyme, TIM barrel domain RD12_RS07245 PF00958 GMP synthase C terminal domain RD12_RS07245 PF00117 Glutamine amidotransferase class-I RD12_RS07260 PF01145 SPFH domain / Band 7 family RD12_RS07260 PF16200 C-terminal region of band_7 RD12_RS07265 PF00990 Diguanylate cyclase, GGDEF domain RD12_RS07265 PF08448 PAS fold RD12_RS07270 PF01668 SmpB protein RD12_RS07280 PF03364 Polyketide cyclase / dehydrase and lipid transport RD12_RS07285 PF03658 RnfH family Ubiquitin RD12_RS07290 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS07290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS07290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS07295 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS07300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD12_RS07300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD12_RS07325 PF00923 Transaldolase/Fructose-6-phosphate aldolase RD12_RS07330 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RD12_RS07330 PF00117 Glutamine amidotransferase class-I RD12_RS07335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD12_RS07335 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RD12_RS07335 PF02142 MGS-like domain RD12_RS07345 PF00300 Histidine phosphatase superfamily (branch 1) RD12_RS07350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS07350 PF03466 LysR substrate binding domain RD12_RS07355 PF00005 ABC transporter RD12_RS07355 PF08402 TOBE domain RD12_RS07360 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS07375 PF08448 PAS fold RD12_RS07375 PF08447 PAS fold RD12_RS07375 PF00563 EAL domain RD12_RS07375 PF00990 Diguanylate cyclase, GGDEF domain RD12_RS07380 PF01264 Chorismate synthase RD12_RS07385 PF01435 Peptidase family M48 RD12_RS07390 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RD12_RS07395 PF03453 MoeA N-terminal region (domain I and II) RD12_RS07395 PF03454 MoeA C-terminal region (domain IV) RD12_RS07395 PF00994 Probable molybdopterin binding domain RD12_RS07400 PF12804 MobA-like NTP transferase domain RD12_RS07405 PF10609 NUBPL iron-transfer P-loop NTPase RD12_RS07435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RD12_RS07435 PF01568 Molydopterin dinucleotide binding domain RD12_RS07435 PF00384 Molybdopterin oxidoreductase RD12_RS07440 PF13247 4Fe-4S dicluster domain RD12_RS07465 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS07470 PF00005 ABC transporter RD12_RS07475 PF12849 PBP superfamily domain RD12_RS07480 PF00330 Aconitase family (aconitate hydratase) RD12_RS07485 PF00694 Aconitase C-terminal domain RD12_RS07490 PF00180 Isocitrate/isopropylmalate dehydrogenase RD12_RS07495 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD12_RS07495 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD12_RS07505 PF01416 tRNA pseudouridine synthase RD12_RS07510 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS07520 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD12_RS07525 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RD12_RS07540 PF03883 Peroxide stress protein YaaA RD12_RS07550 PF12805 FUSC-like inner membrane protein yccS RD12_RS07560 PF00990 Diguanylate cyclase, GGDEF domain RD12_RS07570 PF04055 Radical SAM superfamily RD12_RS07570 PF06969 HemN C-terminal domain RD12_RS07580 PF00196 Bacterial regulatory proteins, luxR family RD12_RS07585 PF03129 Anticodon binding domain RD12_RS07585 PF02824 TGS domain RD12_RS07585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD12_RS07585 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD12_RS07590 PF00707 Translation initiation factor IF-3, C-terminal domain RD12_RS07590 PF05198 Translation initiation factor IF-3, N-terminal domain RD12_RS07595 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RD12_RS07595 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RD12_RS07605 PF00381 PTS HPr component phosphorylation site RD12_RS07610 PF02896 PEP-utilising enzyme, TIM barrel domain RD12_RS07610 PF00391 PEP-utilising enzyme, mobile domain RD12_RS07610 PF05524 PEP-utilising enzyme, N-terminal RD12_RS07620 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD12_RS07630 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS07635 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS07640 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS07645 PF00005 ABC transporter RD12_RS07660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD12_RS07660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD12_RS07670 PF02293 AmiS/UreI family transporter RD12_RS07675 PF03069 Acetamidase/Formamidase family RD12_RS07690 PF01116 Fructose-bisphosphate aldolase class-II RD12_RS07700 PF01259 SAICAR synthetase RD12_RS07705 PF15723 Motility quorum-sensing regulator, toxin of MqsA RD12_RS07710 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD12_RS07715 PF02600 Disulfide bond formation protein DsbB RD12_RS07720 PF00731 AIR carboxylase RD12_RS07725 PF02222 ATP-grasp domain RD12_RS07725 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RD12_RS07730 PF03481 Putative GTP-binding controlling metal-binding RD12_RS07730 PF01300 Telomere recombination RD12_RS07735 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS07740 PF09339 IclR helix-turn-helix domain RD12_RS07740 PF01614 Bacterial transcriptional regulator RD12_RS07745 PF00491 Arginase family RD12_RS07750 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS07755 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS07760 PF00005 ABC transporter RD12_RS07765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD12_RS07765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD12_RS07775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS07775 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS07775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS07780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD12_RS07780 PF00205 Thiamine pyrophosphate enzyme, central domain RD12_RS07780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD12_RS07785 PF03466 LysR substrate binding domain RD12_RS07785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS07790 PF02899 Phage integrase, N-terminal SAM-like domain RD12_RS07790 PF00589 Phage integrase family RD12_RS07795 PF04073 Aminoacyl-tRNA editing domain RD12_RS07800 PF01174 SNO glutamine amidotransferase family RD12_RS07815 PF00768 D-alanyl-D-alanine carboxypeptidase RD12_RS07825 PF07690 Major Facilitator Superfamily RD12_RS07835 PF13361 UvrD-like helicase C-terminal domain RD12_RS07835 PF00580 UvrD/REP helicase N-terminal domain RD12_RS07835 PF12705 PD-(D/E)XK nuclease superfamily RD12_RS07845 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RD12_RS07845 PF12170 DNA polymerase III tau subunit V interacting with alpha RD12_RS07845 PF12169 DNA polymerase III subunits gamma and tau domain III RD12_RS07850 PF02575 YbaB/EbfC DNA-binding family RD12_RS07855 PF13662 Toprim domain RD12_RS07855 PF02132 RecR protein RD12_RS07875 PF04228 Putative neutral zinc metallopeptidase RD12_RS07880 PF01300 Telomere recombination RD12_RS07915 PF03358 NADPH-dependent FMN reductase RD12_RS07920 PF07311 Dodecin RD12_RS07925 PF00488 MutS domain V RD12_RS07925 PF05190 MutS family domain IV RD12_RS07925 PF05192 MutS domain III RD12_RS07925 PF01624 MutS domain I RD12_RS07925 PF05188 MutS domain II RD12_RS07930 PF08007 Cupin superfamily protein RD12_RS07935 PF16970 Type-1 fimbrial protein, A RD12_RS07940 PF06804 NlpB/DapX lipoprotein RD12_RS07945 PF00701 Dihydrodipicolinate synthetase family RD12_RS07950 PF02163 Peptidase family M50 RD12_RS07960 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS07965 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS07970 PF00005 ABC transporter RD12_RS07975 PF02824 TGS domain RD12_RS07975 PF13291 ACT domain RD12_RS07975 PF04607 Region found in RelA / SpoT proteins RD12_RS07980 PF01192 RNA polymerase Rpb6 RD12_RS07985 PF00625 Guanylate kinase RD12_RS07990 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD12_RS07995 PF00034 Cytochrome c RD12_RS08005 PF00877 NlpC/P60 family RD12_RS08010 PF01048 Phosphorylase superfamily RD12_RS08010 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RD12_RS08030 PF08340 Domain of unknown function (DUF1732) RD12_RS08030 PF03755 YicC-like family, N-terminal region RD12_RS08035 PF03725 3' exoribonuclease family, domain 2 RD12_RS08035 PF01138 3' exoribonuclease family, domain 1 RD12_RS08045 PF03466 LysR substrate binding domain RD12_RS08045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS08050 PF00563 EAL domain RD12_RS08050 PF17154 Gammaproteobacterial periplasmic sensor domain RD12_RS08050 PF00990 Diguanylate cyclase, GGDEF domain RD12_RS08050 PF00672 HAMP domain RD12_RS08055 PF01725 Ham1 family RD12_RS08065 PF06969 HemN C-terminal domain RD12_RS08065 PF04055 Radical SAM superfamily RD12_RS08070 PF03951 Glutamine synthetase, beta-Grasp domain RD12_RS08070 PF00120 Glutamine synthetase, catalytic domain RD12_RS08075 PF00989 PAS fold RD12_RS08075 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS08080 PF00158 Sigma-54 interaction domain RD12_RS08080 PF00072 Response regulator receiver domain RD12_RS08080 PF02954 Bacterial regulatory protein, Fis family RD12_RS08085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS08085 PF03466 LysR substrate binding domain RD12_RS08090 PF02678 Pirin RD12_RS08090 PF17954 Quercetinase C-terminal cupin domain RD12_RS08095 PF05726 Pirin C-terminal cupin domain RD12_RS08095 PF02678 Pirin RD12_RS08105 PF08402 TOBE domain RD12_RS08105 PF00005 ABC transporter RD12_RS08110 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS08120 PF00970 Oxidoreductase FAD-binding domain RD12_RS08120 PF00175 Oxidoreductase NAD-binding domain RD12_RS08125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS08125 PF03466 LysR substrate binding domain RD12_RS08135 PF00248 Aldo/keto reductase family RD12_RS08145 PF01042 Endoribonuclease L-PSP RD12_RS08150 PF17191 RecG wedge domain RD12_RS08150 PF00270 DEAD/DEAH box helicase RD12_RS08150 PF00271 Helicase conserved C-terminal domain RD12_RS08155 PF03466 LysR substrate binding domain RD12_RS08155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS08160 PF03466 LysR substrate binding domain RD12_RS08165 PF00171 Aldehyde dehydrogenase family RD12_RS08170 PF00210 Ferritin-like domain RD12_RS08195 PF00005 ABC transporter RD12_RS08205 PF00534 Glycosyl transferases group 1 RD12_RS08215 PF02563 Polysaccharide biosynthesis/export protein RD12_RS08220 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD12_RS08220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD12_RS08220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD12_RS08225 PF01370 NAD dependent epimerase/dehydratase family RD12_RS08230 PF05159 Capsule polysaccharide biosynthesis protein RD12_RS08235 PF05159 Capsule polysaccharide biosynthesis protein RD12_RS08245 PF00106 short chain dehydrogenase RD12_RS08260 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS08260 PF14759 Reductase C-terminal RD12_RS08270 PF00005 ABC transporter RD12_RS08275 PF00005 ABC transporter RD12_RS08275 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD12_RS08280 PF02653 Branched-chain amino acid transport system / permease component RD12_RS08280 PF11862 Domain of unknown function (DUF3382) RD12_RS08290 PF03741 Integral membrane protein TerC family RD12_RS08300 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS08315 PF07726 ATPase family associated with various cellular activities (AAA) RD12_RS08315 PF17863 AAA lid domain RD12_RS08345 PF00884 Sulfatase RD12_RS08370 PF00196 Bacterial regulatory proteins, luxR family RD12_RS08370 PF00072 Response regulator receiver domain RD12_RS08375 PF03797 Autotransporter beta-domain RD12_RS08375 PF00082 Subtilase family RD12_RS08375 PF12951 Passenger-associated-transport-repeat RD12_RS08380 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD12_RS08385 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RD12_RS08390 PF02798 Glutathione S-transferase, N-terminal domain RD12_RS08390 PF00043 Glutathione S-transferase, C-terminal domain RD12_RS08395 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD12_RS08405 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS08415 PF01070 FMN-dependent dehydrogenase RD12_RS08420 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD12_RS08435 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS08440 PF03466 LysR substrate binding domain RD12_RS08440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS08445 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS08470 PF03358 NADPH-dependent FMN reductase RD12_RS08495 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS08505 PF03466 LysR substrate binding domain RD12_RS08505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS08520 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS08525 PF13244 Domain of unknown function (DUF4040) RD12_RS08525 PF00361 Proton-conducting membrane transporter RD12_RS08525 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RD12_RS08525 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD12_RS08530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD12_RS08535 PF00361 Proton-conducting membrane transporter RD12_RS08540 PF01899 Na+/H+ ion antiporter subunit RD12_RS08545 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RD12_RS08570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD12_RS08575 PF02016 LD-carboxypeptidase N-terminal domain RD12_RS08575 PF17676 LD-carboxypeptidase C-terminal domain RD12_RS08580 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS08585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD12_RS08595 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS08600 PF12848 ABC transporter RD12_RS08600 PF00005 ABC transporter RD12_RS08605 PF00005 ABC transporter RD12_RS08635 PF00175 Oxidoreductase NAD-binding domain RD12_RS08635 PF00042 Globin RD12_RS08635 PF00970 Oxidoreductase FAD-binding domain RD12_RS08640 PF02082 Transcriptional regulator RD12_RS08645 PF01266 FAD dependent oxidoreductase RD12_RS08660 PF01571 Aminomethyltransferase folate-binding domain RD12_RS08665 PF02618 YceG-like family RD12_RS08670 PF02223 Thymidylate kinase RD12_RS08675 PF12169 DNA polymerase III subunits gamma and tau domain III RD12_RS08680 PF01026 TatD related DNase RD12_RS08695 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS08705 PF00005 ABC transporter RD12_RS08710 PF00491 Arginase family RD12_RS08715 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD12_RS08715 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD12_RS08720 PF00171 Aldehyde dehydrogenase family RD12_RS08725 PF01546 Peptidase family M20/M25/M40 RD12_RS08725 PF07687 Peptidase dimerisation domain RD12_RS08730 PF00205 Thiamine pyrophosphate enzyme, central domain RD12_RS08730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD12_RS08730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD12_RS08740 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD12_RS08740 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD12_RS08750 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD12_RS08750 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS08755 PF00392 Bacterial regulatory proteins, gntR family RD12_RS08755 PF07729 FCD domain RD12_RS08765 PF04343 Protein of unknown function, DUF488 RD12_RS08785 PF01425 Amidase RD12_RS08790 PF07286 Protein of unknown function (DUF1445) RD12_RS08800 PF00989 PAS fold RD12_RS08800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS08800 PF00072 Response regulator receiver domain RD12_RS08800 PF01627 Hpt domain RD12_RS08800 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS08800 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS08805 PF00196 Bacterial regulatory proteins, luxR family RD12_RS08805 PF00072 Response regulator receiver domain RD12_RS08810 PF05594 Haemagluttinin repeat RD12_RS08810 PF13332 Hemagglutinin repeat RD12_RS08810 PF05860 haemagglutination activity domain RD12_RS08810 PF13018 Extended Signal Peptide of Type V secretion system RD12_RS08815 PF16970 Type-1 fimbrial protein, A RD12_RS08820 PF02753 Pili assembly chaperone PapD, C-terminal domain RD12_RS08820 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RD12_RS08825 PF13954 PapC N-terminal domain RD12_RS08825 PF13953 PapC C-terminal domain RD12_RS08825 PF00577 Outer membrane usher protein RD12_RS08830 PF00419 Fimbrial protein RD12_RS08835 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD12_RS08835 PF17287 POTRA domain RD12_RS08835 PF08479 POTRA domain, ShlB-type RD12_RS08850 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS08875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS08875 PF03466 LysR substrate binding domain RD12_RS08885 PF05378 Hydantoinase/oxoprolinase N-terminal region RD12_RS08885 PF01968 Hydantoinase/oxoprolinase RD12_RS08900 PF00924 Mechanosensitive ion channel RD12_RS08900 PF05552 Conserved TM helix RD12_RS08910 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS08915 PF00588 SpoU rRNA Methylase family RD12_RS08920 PF00459 Inositol monophosphatase family RD12_RS08925 PF03741 Integral membrane protein TerC family RD12_RS08925 PF03471 Transporter associated domain RD12_RS08930 PF02673 Bacitracin resistance protein BacA RD12_RS08935 PF00149 Calcineurin-like phosphoesterase RD12_RS08940 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RD12_RS08950 PF01406 tRNA synthetases class I (C) catalytic domain RD12_RS08950 PF09190 DALR domain RD12_RS08955 PF02805 Metal binding domain of Ada RD12_RS08955 PF00730 HhH-GPD superfamily base excision DNA repair protein RD12_RS08955 PF12833 Helix-turn-helix domain RD12_RS08955 PF06029 AlkA N-terminal domain RD12_RS08960 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RD12_RS08970 PF01171 PP-loop family RD12_RS08970 PF09179 TilS substrate binding domain RD12_RS08975 PF00696 Amino acid kinase family RD12_RS08975 PF01842 ACT domain RD12_RS08975 PF13840 ACT domain RD12_RS09000 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD12_RS09000 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD12_RS09005 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD12_RS09005 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD12_RS09010 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD12_RS09015 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS09020 PF00561 alpha/beta hydrolase fold RD12_RS09025 PF01958 Domain of unknown function DUF108 RD12_RS09025 PF03447 Homoserine dehydrogenase, NAD binding domain RD12_RS09040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS09040 PF03466 LysR substrate binding domain RD12_RS09060 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS09065 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS09070 PF00005 ABC transporter RD12_RS09070 PF08402 TOBE domain RD12_RS09080 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS09080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD12_RS09085 PF09339 IclR helix-turn-helix domain RD12_RS09085 PF01614 Bacterial transcriptional regulator RD12_RS09090 PF13380 CoA binding domain RD12_RS09095 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS09100 PF01042 Endoribonuclease L-PSP RD12_RS09125 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD12_RS09135 PF00535 Glycosyl transferase family 2 RD12_RS09140 PF01522 Polysaccharide deacetylase RD12_RS09140 PF14883 Hypothetical glycosyl hydrolase family 13 RD12_RS09160 PF12802 MarR family RD12_RS09175 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD12_RS09175 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD12_RS09175 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD12_RS09175 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD12_RS09180 PF00342 Phosphoglucose isomerase RD12_RS09185 PF00132 Bacterial transferase hexapeptide (six repeats) RD12_RS09195 PF02146 Sir2 family RD12_RS09200 PF00459 Inositol monophosphatase family RD12_RS09205 PF00171 Aldehyde dehydrogenase family RD12_RS09210 PF00202 Aminotransferase class-III RD12_RS09215 PF00392 Bacterial regulatory proteins, gntR family RD12_RS09215 PF00155 Aminotransferase class I and II RD12_RS09225 PF00580 UvrD/REP helicase N-terminal domain RD12_RS09225 PF13361 UvrD-like helicase C-terminal domain RD12_RS09230 PF01544 CorA-like Mg2+ transporter protein RD12_RS09240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS09245 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS09250 PF12911 N-terminal TM domain of oligopeptide transport permease C RD12_RS09250 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS09255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS09255 PF00005 ABC transporter RD12_RS09260 PF01047 MarR family RD12_RS09275 PF08479 POTRA domain, ShlB-type RD12_RS09275 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD12_RS09280 PF00563 EAL domain RD12_RS09280 PF00990 Diguanylate cyclase, GGDEF domain RD12_RS09280 PF03707 Bacterial signalling protein N terminal repeat RD12_RS09310 PF04972 BON domain RD12_RS09310 PF00263 Bacterial type II and III secretion system protein RD12_RS09310 PF13629 Pilus formation protein N terminal region RD12_RS09320 PF00437 Type II/IV secretion system protein RD12_RS09350 PF00158 Sigma-54 interaction domain RD12_RS09350 PF00072 Response regulator receiver domain RD12_RS09350 PF02954 Bacterial regulatory protein, Fis family RD12_RS09365 PF04542 Sigma-70 region 2 RD12_RS09365 PF08281 Sigma-70, region 4 RD12_RS09375 PF00034 Cytochrome c RD12_RS09380 PF08207 Elongation factor P (EF-P) KOW-like domain RD12_RS09380 PF09285 Elongation factor P, C-terminal RD12_RS09380 PF01132 Elongation factor P (EF-P) OB domain RD12_RS09395 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RD12_RS09400 PF00694 Aconitase C-terminal domain RD12_RS09400 PF00330 Aconitase family (aconitate hydratase) RD12_RS09410 PF07715 TonB-dependent Receptor Plug Domain RD12_RS09410 PF00593 TonB dependent receptor RD12_RS09425 PF00691 OmpA family RD12_RS09435 PF00330 Aconitase family (aconitate hydratase) RD12_RS09435 PF06434 Aconitate hydratase 2 N-terminus RD12_RS09435 PF11791 Aconitate B N-terminal domain RD12_RS09460 PF00892 EamA-like transporter family RD12_RS09465 PF01925 Sulfite exporter TauE/SafE RD12_RS09480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS09480 PF03466 LysR substrate binding domain RD12_RS09485 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RD12_RS09485 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RD12_RS09495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS09495 PF03466 LysR substrate binding domain RD12_RS09540 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD12_RS09540 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD12_RS09545 PF01425 Amidase RD12_RS09555 PF00171 Aldehyde dehydrogenase family RD12_RS09570 PF08264 Anticodon-binding domain of tRNA RD12_RS09570 PF00133 tRNA synthetases class I (I, L, M and V) RD12_RS09570 PF09334 tRNA synthetases class I (M) RD12_RS09570 PF13603 Leucyl-tRNA synthetase, Domain 2 RD12_RS09575 PF07690 Major Facilitator Superfamily RD12_RS09580 PF01047 MarR family RD12_RS09600 PF00916 Sulfate permease family RD12_RS09600 PF01740 STAS domain RD12_RS09605 PF00471 Ribosomal protein L33 RD12_RS09610 PF00830 Ribosomal L28 family RD12_RS09615 PF07690 Major Facilitator Superfamily RD12_RS09635 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS09640 PF00571 CBS domain RD12_RS09640 PF00005 ABC transporter RD12_RS09645 PF01361 Tautomerase enzyme RD12_RS09650 PF00108 Thiolase, N-terminal domain RD12_RS09650 PF02803 Thiolase, C-terminal domain RD12_RS09660 PF00392 Bacterial regulatory proteins, gntR family RD12_RS09660 PF07729 FCD domain RD12_RS09670 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS09680 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS09685 PF00080 Copper/zinc superoxide dismutase (SODC) RD12_RS09700 PF00005 ABC transporter RD12_RS09705 PF03459 TOBE domain RD12_RS09705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS09725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD12_RS09725 PF00529 HlyD membrane-fusion protein of T1SS RD12_RS09730 PF00873 AcrB/AcrD/AcrF family RD12_RS09735 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RD12_RS09735 PF02321 Outer membrane efflux protein RD12_RS09740 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RD12_RS09745 PF01648 4'-phosphopantetheinyl transferase superfamily RD12_RS09750 PF00933 Glycosyl hydrolase family 3 N terminal domain RD12_RS09755 PF02151 UvrB/uvrC motif RD12_RS09755 PF01541 GIY-YIG catalytic domain RD12_RS09755 PF08459 UvrC Helix-hairpin-helix N-terminal RD12_RS09760 PF01066 CDP-alcohol phosphatidyltransferase RD12_RS09775 PF14489 QueF-like protein RD12_RS09775 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RD12_RS09780 PF00463 Isocitrate lyase family RD12_RS09795 PF11862 Domain of unknown function (DUF3382) RD12_RS09795 PF02653 Branched-chain amino acid transport system / permease component RD12_RS09800 PF02653 Branched-chain amino acid transport system / permease component RD12_RS09805 PF13458 Periplasmic binding protein RD12_RS09810 PF00355 Rieske [2Fe-2S] domain RD12_RS09810 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD12_RS09815 PF00866 Ring hydroxylating beta subunit RD12_RS09820 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS09830 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS09835 PF02515 CoA-transferase family III RD12_RS09840 PF07859 alpha/beta hydrolase fold RD12_RS09845 PF14535 AMP-binding enzyme C-terminal domain RD12_RS09845 PF00501 AMP-binding enzyme RD12_RS09850 PF02803 Thiolase, C-terminal domain RD12_RS09850 PF00108 Thiolase, N-terminal domain RD12_RS09860 PF12228 Protein of unknown function (DUF3604) RD12_RS09865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS09865 PF03466 LysR substrate binding domain RD12_RS09870 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS09890 PF01152 Bacterial-like globin RD12_RS09925 PF01425 Amidase RD12_RS09930 PF01425 Amidase RD12_RS09940 PF01522 Polysaccharide deacetylase RD12_RS09945 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS09970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD12_RS09970 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS09995 PF03466 LysR substrate binding domain RD12_RS09995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS10005 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS10005 PF01799 [2Fe-2S] binding domain RD12_RS10010 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD12_RS10020 PF12833 Helix-turn-helix domain RD12_RS10020 PF06719 AraC-type transcriptional regulator N-terminus RD12_RS10040 PF07690 Major Facilitator Superfamily RD12_RS10055 PF00583 Acetyltransferase (GNAT) family RD12_RS10065 PF00664 ABC transporter transmembrane region RD12_RS10065 PF00005 ABC transporter RD12_RS10075 PF02535 ZIP Zinc transporter RD12_RS10090 PF01740 STAS domain RD12_RS10090 PF00916 Sulfate permease family RD12_RS10110 PF03625 Domain of unknown function DUF302 RD12_RS10110 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD12_RS10120 PF12833 Helix-turn-helix domain RD12_RS10120 PF02805 Metal binding domain of Ada RD12_RS10125 PF07237 Protein of unknown function (DUF1428) RD12_RS10130 PF02567 Phenazine biosynthesis-like protein RD12_RS10135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS10135 PF03466 LysR substrate binding domain RD12_RS10140 PF04286 Protein of unknown function (DUF445) RD12_RS10155 PF00171 Aldehyde dehydrogenase family RD12_RS10160 PF00158 Sigma-54 interaction domain RD12_RS10160 PF02954 Bacterial regulatory protein, Fis family RD12_RS10160 PF01590 GAF domain RD12_RS10175 PF04172 LrgB-like family RD12_RS10180 PF03788 LrgA family RD12_RS10185 PF13649 Methyltransferase domain RD12_RS10195 PF00155 Aminotransferase class I and II RD12_RS10200 PF00202 Aminotransferase class-III RD12_RS10235 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD12_RS10235 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RD12_RS10240 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RD12_RS10240 PF13746 4Fe-4S dicluster domain RD12_RS10240 PF12801 4Fe-4S binding domain RD12_RS10265 PF00005 ABC transporter RD12_RS10270 PF01061 ABC-2 type transporter RD12_RS10275 PF01594 AI-2E family transporter RD12_RS10300 PF04545 Sigma-70, region 4 RD12_RS10300 PF03979 Sigma-70 factor, region 1.1 RD12_RS10300 PF04546 Sigma-70, non-essential region RD12_RS10300 PF04539 Sigma-70 region 3 RD12_RS10300 PF04542 Sigma-70 region 2 RD12_RS10300 PF00140 Sigma-70 factor, region 1.2 RD12_RS10305 PF08275 DNA primase catalytic core, N-terminal domain RD12_RS10305 PF01807 CHC2 zinc finger RD12_RS10305 PF08278 DNA primase DnaG DnaB-binding RD12_RS10305 PF10410 DnaB-helicase binding domain of primase RD12_RS10310 PF01165 Ribosomal protein S21 RD12_RS10315 PF00156 Phosphoribosyl transferase domain RD12_RS10320 PF00709 Adenylosuccinate synthetase RD12_RS10325 PF13393 Histidyl-tRNA synthetase RD12_RS10330 PF01145 SPFH domain / Band 7 family RD12_RS10335 PF12221 Bacterial membrane protein N terminal RD12_RS10335 PF01145 SPFH domain / Band 7 family RD12_RS10340 PF16360 GTP-binding GTPase Middle Region RD12_RS10340 PF13167 GTP-binding GTPase N-terminal RD12_RS10340 PF01926 50S ribosome-binding GTPase RD12_RS10345 PF17209 Hfq protein RD12_RS10350 PF00155 Aminotransferase class I and II RD12_RS10355 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RD12_RS10355 PF01926 50S ribosome-binding GTPase RD12_RS10360 PF13360 PQQ-like domain RD12_RS10365 PF09976 Tetratricopeptide repeat-like domain RD12_RS10370 PF03129 Anticodon binding domain RD12_RS10370 PF13393 Histidyl-tRNA synthetase RD12_RS10375 PF04551 GcpE protein RD12_RS10385 PF04055 Radical SAM superfamily RD12_RS10390 PF00334 Nucleoside diphosphate kinase RD12_RS10395 PF08264 Anticodon-binding domain of tRNA RD12_RS10395 PF00133 tRNA synthetases class I (I, L, M and V) RD12_RS10395 PF10458 Valyl tRNA synthetase tRNA binding arm RD12_RS10405 PF00486 Transcriptional regulatory protein, C terminal RD12_RS10405 PF00072 Response regulator receiver domain RD12_RS10410 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS10410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS10410 PF08521 Two-component sensor kinase N-terminal RD12_RS10430 PF00266 Aminotransferase class-V RD12_RS10435 PF01746 tRNA (Guanine-1)-methyltransferase RD12_RS10440 PF01782 RimM N-terminal domain RD12_RS10445 PF00886 Ribosomal protein S16 RD12_RS10455 PF01206 Sulfurtransferase TusA RD12_RS10460 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD12_RS10460 PF01411 tRNA synthetases class II (A) RD12_RS10460 PF02272 DHHA1 domain RD12_RS10505 PF01425 Amidase RD12_RS10510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS10510 PF00005 ABC transporter RD12_RS10515 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS10520 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS10525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS10540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS10540 PF03466 LysR substrate binding domain RD12_RS10545 PF13416 Bacterial extracellular solute-binding protein RD12_RS10550 PF01266 FAD dependent oxidoreductase RD12_RS10555 PF00970 Oxidoreductase FAD-binding domain RD12_RS10555 PF00175 Oxidoreductase NAD-binding domain RD12_RS10555 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS10560 PF02261 Aspartate decarboxylase RD12_RS10575 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD12_RS10580 PF17042 Nucleotide-binding C-terminal domain RD12_RS10580 PF07005 Sugar-binding N-terminal domain RD12_RS10585 PF03812 2-keto-3-deoxygluconate permease RD12_RS10595 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS10605 PF02142 MGS-like domain RD12_RS10610 PF04384 Iron-sulphur cluster assembly RD12_RS10615 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS10620 PF00012 Hsp70 protein RD12_RS10625 PF07743 HSCB C-terminal oligomerisation domain RD12_RS10630 PF01521 Iron-sulphur cluster biosynthesis RD12_RS10635 PF01592 NifU-like N terminal domain RD12_RS10640 PF00266 Aminotransferase class-V RD12_RS10645 PF02082 Transcriptional regulator RD12_RS10650 PF01451 Low molecular weight phosphotyrosine protein phosphatase RD12_RS10655 PF04851 Type III restriction enzyme, res subunit RD12_RS10655 PF00271 Helicase conserved C-terminal domain RD12_RS10655 PF02151 UvrB/uvrC motif RD12_RS10655 PF12344 Ultra-violet resistance protein B RD12_RS10655 PF17757 UvrB interaction domain RD12_RS10660 PF00155 Aminotransferase class I and II RD12_RS10665 PF00717 Peptidase S24-like RD12_RS10665 PF01726 LexA DNA binding domain RD12_RS10670 PF03797 Autotransporter beta-domain RD12_RS10670 PF03212 Pertactin RD12_RS10690 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS10695 PF01144 Coenzyme A transferase RD12_RS10700 PF01144 Coenzyme A transferase RD12_RS10710 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS10710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS10710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS10720 PF02803 Thiolase, C-terminal domain RD12_RS10720 PF00108 Thiolase, N-terminal domain RD12_RS10730 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS10735 PF01575 MaoC like domain RD12_RS10740 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS10745 PF02515 CoA-transferase family III RD12_RS10750 PF03466 LysR substrate binding domain RD12_RS10750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS10755 PF02190 ATP-dependent protease La (LON) substrate-binding domain RD12_RS10755 PF00004 ATPase family associated with various cellular activities (AAA) RD12_RS10755 PF05362 Lon protease (S16) C-terminal proteolytic domain RD12_RS10760 PF06689 ClpX C4-type zinc finger RD12_RS10760 PF07724 AAA domain (Cdc48 subfamily) RD12_RS10760 PF10431 C-terminal, D2-small domain, of ClpB protein RD12_RS10765 PF00574 Clp protease RD12_RS10770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD12_RS10770 PF05698 Bacterial trigger factor protein (TF) C-terminus RD12_RS10770 PF05697 Bacterial trigger factor protein (TF) RD12_RS10775 PF03350 Uncharacterized protein family, UPF0114 RD12_RS10780 PF00313 'Cold-shock' DNA-binding domain RD12_RS10790 PF00313 'Cold-shock' DNA-binding domain RD12_RS10825 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RD12_RS10825 PF14602 Hexapeptide repeat of succinyl-transferase RD12_RS10825 PF00132 Bacterial transferase hexapeptide (six repeats) RD12_RS10830 PF01546 Peptidase family M20/M25/M40 RD12_RS10830 PF07687 Peptidase dimerisation domain RD12_RS10835 PF05175 Methyltransferase small domain RD12_RS10840 PF00005 ABC transporter RD12_RS10840 PF12848 ABC transporter RD12_RS10845 PF07715 TonB-dependent Receptor Plug Domain RD12_RS10850 PF00580 UvrD/REP helicase N-terminal domain RD12_RS10850 PF13361 UvrD-like helicase C-terminal domain RD12_RS10870 PF01029 NusB family RD12_RS10870 PF01189 16S rRNA methyltransferase RsmB/F RD12_RS10875 PF01687 Riboflavin kinase RD12_RS10875 PF06574 FAD synthetase RD12_RS10880 PF06827 Zinc finger found in FPG and IleRS RD12_RS10880 PF08264 Anticodon-binding domain of tRNA RD12_RS10880 PF00133 tRNA synthetases class I (I, L, M and V) RD12_RS10885 PF01252 Signal peptidase (SPase) II RD12_RS10890 PF02441 Flavoprotein RD12_RS10890 PF04127 DNA / pantothenate metabolism flavoprotein RD12_RS10900 PF01037 Lrp/AsnC ligand binding domain RD12_RS10915 PF13406 Transglycosylase SLT domain RD12_RS10920 PF04305 Protein of unknown function (DUF455) RD12_RS10940 PF08443 RimK-like ATP-grasp domain RD12_RS10940 PF02875 Mur ligase family, glutamate ligase domain RD12_RS10940 PF08245 Mur ligase middle domain RD12_RS10945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD12_RS10945 PF02875 Mur ligase family, glutamate ligase domain RD12_RS10945 PF08245 Mur ligase middle domain RD12_RS10950 PF05532 CsbD-like RD12_RS10960 PF04972 BON domain RD12_RS10975 PF00005 ABC transporter RD12_RS10980 PF13472 GDSL-like Lipase/Acylhydrolase family RD12_RS10985 PF13145 PPIC-type PPIASE domain RD12_RS10990 PF03009 Glycerophosphoryl diester phosphodiesterase family RD12_RS10995 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RD12_RS11000 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS11000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD12_RS11005 PF08534 Redoxin RD12_RS11005 PF00462 Glutaredoxin RD12_RS11015 PF00376 MerR family regulatory protein RD12_RS11015 PF09278 MerR, DNA binding RD12_RS11020 PF05958 tRNA (Uracil-5-)-methyltransferase RD12_RS11040 PF01551 Peptidase family M23 RD12_RS11040 PF01476 LysM domain RD12_RS11050 PF01975 Survival protein SurE RD12_RS11055 PF02660 Glycerol-3-phosphate acyltransferase RD12_RS11065 PF00814 Glycoprotease family RD12_RS11070 PF00860 Permease family RD12_RS11080 PF00085 Thioredoxin RD12_RS11085 PF01205 Uncharacterized protein family UPF0029 RD12_RS11095 PF00583 Acetyltransferase (GNAT) family RD12_RS11100 PF12802 MarR family RD12_RS11110 PF00202 Aminotransferase class-III RD12_RS11115 PF16868 NMT1-like family RD12_RS11135 PF03797 Autotransporter beta-domain RD12_RS11145 PF13396 Phospholipase_D-nuclease N-terminal RD12_RS11145 PF13091 PLD-like domain RD12_RS11150 PF01740 STAS domain RD12_RS11155 PF13581 Histidine kinase-like ATPase domain RD12_RS11160 PF01168 Alanine racemase, N-terminal domain RD12_RS11160 PF00842 Alanine racemase, C-terminal domain RD12_RS11170 PF07228 Stage II sporulation protein E (SpoIIE) RD12_RS11170 PF00672 HAMP domain RD12_RS11195 PF04542 Sigma-70 region 2 RD12_RS11195 PF08281 Sigma-70, region 4 RD12_RS11200 PF03958 Bacterial type II/III secretion system short domain RD12_RS11200 PF00263 Bacterial type II and III secretion system protein RD12_RS11210 PF01312 FlhB HrpN YscU SpaS Family RD12_RS11215 PF01311 Bacterial export proteins, family 1 RD12_RS11220 PF01313 Bacterial export proteins, family 3 RD12_RS11225 PF00813 FliP family RD12_RS11230 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD12_RS11245 PF18269 T3SS EscN ATPase C-terminal domain RD12_RS11245 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD12_RS11245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD12_RS11250 PF02108 Flagellar assembly protein FliH RD12_RS11260 PF01514 Secretory protein of YscJ/FliF family RD12_RS11325 PF00771 FHIPEP family RD12_RS11355 PF01272 Transcription elongation factor, GreA/GreB, C-term RD12_RS11355 PF03449 Transcription elongation factor, N-terminal RD12_RS11360 PF00672 HAMP domain RD12_RS11360 PF02203 Tar ligand binding domain homologue RD12_RS11360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD12_RS11365 PF00860 Permease family RD12_RS11385 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS11395 PF13419 Haloacid dehalogenase-like hydrolase RD12_RS11400 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS11405 PF08402 TOBE domain RD12_RS11405 PF00005 ABC transporter RD12_RS11410 PF03466 LysR substrate binding domain RD12_RS11410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS11420 PF00581 Rhodanese-like domain RD12_RS11430 PF01435 Peptidase family M48 RD12_RS11435 PF00107 Zinc-binding dehydrogenase RD12_RS11435 PF08240 Alcohol dehydrogenase GroES-like domain RD12_RS11440 PF00892 EamA-like transporter family RD12_RS11450 PF01047 MarR family RD12_RS11460 PF00529 HlyD membrane-fusion protein of T1SS RD12_RS11460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD12_RS11465 PF07690 Major Facilitator Superfamily RD12_RS11470 PF00180 Isocitrate/isopropylmalate dehydrogenase RD12_RS11475 PF00155 Aminotransferase class I and II RD12_RS11475 PF00392 Bacterial regulatory proteins, gntR family RD12_RS11480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS11485 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS11490 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS11490 PF12911 N-terminal TM domain of oligopeptide transport permease C RD12_RS11495 PF00005 ABC transporter RD12_RS11495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS11505 PF00202 Aminotransferase class-III RD12_RS11510 PF07883 Cupin domain RD12_RS11515 PF00850 Histone deacetylase domain RD12_RS11520 PF01546 Peptidase family M20/M25/M40 RD12_RS11520 PF07687 Peptidase dimerisation domain RD12_RS11530 PF00171 Aldehyde dehydrogenase family RD12_RS11535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD12_RS11540 PF00202 Aminotransferase class-III RD12_RS11545 PF01235 Sodium:alanine symporter family RD12_RS11550 PF05872 Bacterial protein of unknown function (DUF853) RD12_RS11555 PF01709 Transcriptional regulator RD12_RS11560 PF02843 Phosphoribosylglycinamide synthetase, C domain RD12_RS11560 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RD12_RS11560 PF02844 Phosphoribosylglycinamide synthetase, N domain RD12_RS11565 PF01218 Coproporphyrinogen III oxidase RD12_RS11570 PF01467 Cytidylyltransferase-like RD12_RS11580 PF02590 Predicted SPOUT methyltransferase RD12_RS11585 PF02545 Maf-like protein RD12_RS11590 PF03797 Autotransporter beta-domain RD12_RS11590 PF03212 Pertactin RD12_RS11630 PF00575 S1 RNA binding domain RD12_RS11630 PF10150 Ribonuclease E/G family RD12_RS11635 PF01842 ACT domain RD12_RS11635 PF00800 Prephenate dehydratase RD12_RS11645 PF07690 Major Facilitator Superfamily RD12_RS11650 PF00005 ABC transporter RD12_RS11650 PF00664 ABC transporter transmembrane region RD12_RS11655 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD12_RS11665 PF03692 Putative zinc- or iron-chelating domain RD12_RS11680 PF00884 Sulfatase RD12_RS11685 PF00534 Glycosyl transferases group 1 RD12_RS11685 PF13439 Glycosyltransferase Family 4 RD12_RS11690 PF00535 Glycosyl transferase family 2 RD12_RS11695 PF01522 Polysaccharide deacetylase RD12_RS11700 PF00534 Glycosyl transferases group 1 RD12_RS11700 PF13439 Glycosyltransferase Family 4 RD12_RS11705 PF07733 Bacterial DNA polymerase III alpha NTPase domain RD12_RS11705 PF02811 PHP domain RD12_RS11705 PF14579 Helix-hairpin-helix motif RD12_RS11705 PF01336 OB-fold nucleic acid binding domain RD12_RS11705 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RD12_RS11715 PF00270 DEAD/DEAH box helicase RD12_RS11715 PF00271 Helicase conserved C-terminal domain RD12_RS11715 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RD12_RS11715 PF11898 Domain of unknown function (DUF3418) RD12_RS11715 PF04408 Helicase associated domain (HA2) RD12_RS11720 PF00696 Amino acid kinase family RD12_RS11720 PF00583 Acetyltransferase (GNAT) family RD12_RS11725 PF04362 Bacterial Fe(2+) trafficking RD12_RS11730 PF04185 Phosphoesterase family RD12_RS11730 PF05506 Domain of unknown function (DUF756) RD12_RS11735 PF01895 PhoU domain RD12_RS11740 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RD12_RS11745 PF18158 Adaptive response protein AidB N-terminal domain RD12_RS11745 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS11745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS11750 PF02646 RmuC family RD12_RS11760 PF02245 Methylpurine-DNA glycosylase (MPG) RD12_RS11770 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS11775 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS11780 PF00005 ABC transporter RD12_RS11780 PF08402 TOBE domain RD12_RS11785 PF13416 Bacterial extracellular solute-binding protein RD12_RS11805 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS11815 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD12_RS11815 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD12_RS11835 PF00285 Citrate synthase, C-terminal domain RD12_RS11840 PF03937 Flavinator of succinate dehydrogenase RD12_RS11845 PF13085 2Fe-2S iron-sulfur cluster binding domain RD12_RS11850 PF00890 FAD binding domain RD12_RS11850 PF02910 Fumarate reductase flavoprotein C-term RD12_RS11855 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD12_RS11860 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD12_RS11865 PF00392 Bacterial regulatory proteins, gntR family RD12_RS11865 PF07702 UTRA domain RD12_RS11870 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RD12_RS11870 PF00056 lactate/malate dehydrogenase, NAD binding domain RD12_RS11880 PF00285 Citrate synthase, C-terminal domain RD12_RS11885 PF00694 Aconitase C-terminal domain RD12_RS11885 PF00330 Aconitase family (aconitate hydratase) RD12_RS11890 PF04303 PrpF protein RD12_RS11895 PF03972 MmgE/PrpD family RD12_RS11900 PF03653 Uncharacterised protein family (UPF0093) RD12_RS11905 PF01170 Putative RNA methylase family UPF0020 RD12_RS11905 PF02926 THUMP domain RD12_RS11925 PF13193 AMP-binding enzyme C-terminal domain RD12_RS11925 PF00501 AMP-binding enzyme RD12_RS11925 PF16177 Acetyl-coenzyme A synthetase N-terminus RD12_RS11935 PF01430 Hsp33 protein RD12_RS11960 PF00211 Adenylate and Guanylate cyclase catalytic domain RD12_RS11965 PF04977 Septum formation initiator RD12_RS11970 PF00113 Enolase, C-terminal TIM barrel domain RD12_RS11970 PF03952 Enolase, N-terminal domain RD12_RS11980 PF00793 DAHP synthetase I family RD12_RS11985 PF00117 Glutamine amidotransferase class-I RD12_RS11985 PF06418 CTP synthase N-terminus RD12_RS11995 PF01321 Creatinase/Prolidase N-terminal domain RD12_RS11995 PF00557 Metallopeptidase family M24 RD12_RS12005 PF03576 Peptidase family S58 RD12_RS12010 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS12010 PF12911 N-terminal TM domain of oligopeptide transport permease C RD12_RS12015 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS12020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS12025 PF00005 ABC transporter RD12_RS12025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS12030 PF01112 Asparaginase RD12_RS12040 PF01144 Coenzyme A transferase RD12_RS12060 PF16363 GDP-mannose 4,6 dehydratase RD12_RS12075 PF01212 Beta-eliminating lyase RD12_RS12080 PF00892 EamA-like transporter family RD12_RS12085 PF16177 Acetyl-coenzyme A synthetase N-terminus RD12_RS12085 PF00501 AMP-binding enzyme RD12_RS12085 PF13193 AMP-binding enzyme C-terminal domain RD12_RS12095 PF03928 Haem-degrading RD12_RS12100 PF00501 AMP-binding enzyme RD12_RS12100 PF13193 AMP-binding enzyme C-terminal domain RD12_RS12100 PF16177 Acetyl-coenzyme A synthetase N-terminus RD12_RS12105 PF00877 NlpC/P60 family RD12_RS12120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS12120 PF03466 LysR substrate binding domain RD12_RS12125 PF00171 Aldehyde dehydrogenase family RD12_RS12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS12135 PF03466 LysR substrate binding domain RD12_RS12145 PF02789 Cytosol aminopeptidase family, N-terminal domain RD12_RS12145 PF00883 Cytosol aminopeptidase family, catalytic domain RD12_RS12150 PF04364 DNA polymerase III chi subunit, HolC RD12_RS12160 PF01027 Inhibitor of apoptosis-promoting Bax1 RD12_RS12165 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS12180 PF00291 Pyridoxal-phosphate dependent enzyme RD12_RS12190 PF11967 Recombination protein O N terminal RD12_RS12190 PF02565 Recombination protein O C terminal RD12_RS12195 PF07650 KH domain RD12_RS12195 PF01926 50S ribosome-binding GTPase RD12_RS12200 PF14622 Ribonuclease-III-like RD12_RS12200 PF00035 Double-stranded RNA binding motif RD12_RS12205 PF10502 Signal peptidase, peptidase S26 RD12_RS12210 PF00009 Elongation factor Tu GTP binding domain RD12_RS12210 PF03144 Elongation factor Tu domain 2 RD12_RS12210 PF00679 Elongation factor G C-terminus RD12_RS12210 PF06421 GTP-binding protein LepA C-terminus RD12_RS12215 PF13180 PDZ domain RD12_RS12230 PF04542 Sigma-70 region 2 RD12_RS12230 PF08281 Sigma-70, region 4 RD12_RS12240 PF00109 Beta-ketoacyl synthase, N-terminal domain RD12_RS12240 PF02801 Beta-ketoacyl synthase, C-terminal domain RD12_RS12245 PF00550 Phosphopantetheine attachment site RD12_RS12255 PF00698 Acyl transferase domain RD12_RS12260 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD12_RS12260 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD12_RS12265 PF02504 Fatty acid synthesis protein RD12_RS12270 PF01783 Ribosomal L32p protein family RD12_RS12275 PF02620 Large ribosomal RNA subunit accumulation protein YceD RD12_RS12280 PF02545 Maf-like protein RD12_RS12290 PF01510 N-acetylmuramoyl-L-alanine amidase RD12_RS12295 PF12805 FUSC-like inner membrane protein yccS RD12_RS12305 PF03883 Peroxide stress protein YaaA RD12_RS12315 PF00106 short chain dehydrogenase RD12_RS12320 PF02254 TrkA-N domain RD12_RS12320 PF00999 Sodium/hydrogen exchanger family RD12_RS12330 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RD12_RS12340 PF06276 Ferric iron reductase FhuF-like transporter RD12_RS12340 PF04183 IucA / IucC family RD12_RS12360 PF07690 Major Facilitator Superfamily RD12_RS12365 PF07715 TonB-dependent Receptor Plug Domain RD12_RS12365 PF07660 Secretin and TonB N terminus short domain RD12_RS12365 PF00593 TonB dependent receptor RD12_RS12380 PF00990 Diguanylate cyclase, GGDEF domain RD12_RS12380 PF17151 Periplasmic sensor domain RD12_RS12405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD12_RS12405 PF02403 Seryl-tRNA synthetase N-terminal domain RD12_RS12410 PF12002 MgsA AAA+ ATPase C terminal RD12_RS12410 PF00004 ATPase family associated with various cellular activities (AAA) RD12_RS12410 PF16193 AAA C-terminal domain RD12_RS12415 PF03548 Outer membrane lipoprotein carrier protein LolA RD12_RS12420 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RD12_RS12420 PF17854 FtsK alpha domain RD12_RS12420 PF09397 Ftsk gamma domain RD12_RS12420 PF01580 FtsK/SpoIIIE family RD12_RS12425 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS12430 PF01713 Smr domain RD12_RS12430 PF00488 MutS domain V RD12_RS12435 PF00893 Small Multidrug Resistance protein RD12_RS12450 PF00474 Sodium:solute symporter family RD12_RS12460 PF03814 Potassium-transporting ATPase A subunit RD12_RS12470 PF02669 K+-transporting ATPase, c chain RD12_RS12475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS12475 PF13492 GAF domain RD12_RS12475 PF13493 Domain of unknown function (DUF4118) RD12_RS12475 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS12475 PF02702 Osmosensitive K+ channel His kinase sensor domain RD12_RS12480 PF00072 Response regulator receiver domain RD12_RS12480 PF00486 Transcriptional regulatory protein, C terminal RD12_RS12500 PF00180 Isocitrate/isopropylmalate dehydrogenase RD12_RS12515 PF00034 Cytochrome c RD12_RS12525 PF01434 Peptidase family M41 RD12_RS12525 PF00004 ATPase family associated with various cellular activities (AAA) RD12_RS12525 PF17862 AAA+ lid domain RD12_RS12545 PF05193 Peptidase M16 inactive domain RD12_RS12545 PF00675 Insulinase (Peptidase family M16) RD12_RS12550 PF01556 DnaJ C terminal domain RD12_RS12550 PF00684 DnaJ central domain RD12_RS12550 PF00226 DnaJ domain RD12_RS12555 PF00012 Hsp70 protein RD12_RS12565 PF01025 GrpE RD12_RS12575 PF00762 Ferrochelatase RD12_RS12580 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RD12_RS12580 PF01628 HrcA protein C terminal domain RD12_RS12585 PF01513 ATP-NAD kinase RD12_RS12590 PF02463 RecF/RecN/SMC N terminal domain RD12_RS12595 PF01475 Ferric uptake regulator family RD12_RS12600 PF04355 SmpA / OmlA family RD12_RS12605 PF05173 Dihydrodipicolinate reductase, C-terminus RD12_RS12605 PF01113 Dihydrodipicolinate reductase, N-terminus RD12_RS12610 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RD12_RS12610 PF01565 FAD binding domain RD12_RS12620 PF00561 alpha/beta hydrolase fold RD12_RS12630 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS12635 PF00551 Formyl transferase RD12_RS12645 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS12645 PF17806 Sarcosine oxidase A3 domain RD12_RS12645 PF01571 Aminomethyltransferase folate-binding domain RD12_RS12645 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD12_RS12650 PF04267 Sarcosine oxidase, delta subunit family RD12_RS12655 PF01266 FAD dependent oxidoreductase RD12_RS12665 PF03466 LysR substrate binding domain RD12_RS12665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS12670 PF02615 Malate/L-lactate dehydrogenase RD12_RS12675 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD12_RS12675 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD12_RS12680 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS12700 PF00437 Type II/IV secretion system protein RD12_RS12705 PF13629 Pilus formation protein N terminal region RD12_RS12705 PF00263 Bacterial type II and III secretion system protein RD12_RS12705 PF04972 BON domain RD12_RS12740 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD12_RS12745 PF00719 Inorganic pyrophosphatase RD12_RS12765 PF03900 Porphobilinogen deaminase, C-terminal domain RD12_RS12765 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RD12_RS12770 PF03741 Integral membrane protein TerC family RD12_RS12775 PF03741 Integral membrane protein TerC family RD12_RS12780 PF00549 CoA-ligase RD12_RS12780 PF02629 CoA binding domain RD12_RS12785 PF08442 ATP-grasp domain RD12_RS12785 PF00549 CoA-ligase RD12_RS12795 PF08267 Cobalamin-independent synthase, N-terminal domain RD12_RS12795 PF01717 Cobalamin-independent synthase, Catalytic domain RD12_RS12800 PF03466 LysR substrate binding domain RD12_RS12800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS12805 PF02631 RecX family RD12_RS12810 PF00154 recA bacterial DNA recombination protein RD12_RS12815 PF00072 Response regulator receiver domain RD12_RS12815 PF00486 Transcriptional regulatory protein, C terminal RD12_RS12820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS12820 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS12825 PF00083 Sugar (and other) transporter RD12_RS12825 PF08946 Osmosensory transporter coiled coil RD12_RS12830 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS12830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD12_RS12830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD12_RS12835 PF00005 ABC transporter RD12_RS12835 PF08402 TOBE domain RD12_RS12840 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS12850 PF00106 short chain dehydrogenase RD12_RS12870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS12870 PF03466 LysR substrate binding domain RD12_RS12875 PF02515 CoA-transferase family III RD12_RS12885 PF04381 Putative exonuclease, RdgC RD12_RS12890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD12_RS12890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD12_RS12910 PF04231 Endonuclease I RD12_RS12960 PF00216 Bacterial DNA-binding protein RD12_RS12965 PF03147 Ferredoxin-fold anticodon binding domain RD12_RS12965 PF01588 Putative tRNA binding domain RD12_RS12965 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RD12_RS12965 PF03483 B3/4 domain RD12_RS12965 PF03484 tRNA synthetase B5 domain RD12_RS12970 PF01409 tRNA synthetases class II core domain (F) RD12_RS12970 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RD12_RS12975 PF00453 Ribosomal protein L20 RD12_RS12980 PF01632 Ribosomal protein L35 RD12_RS12990 PF00692 dUTPase RD12_RS13000 PF00392 Bacterial regulatory proteins, gntR family RD12_RS13000 PF00155 Aminotransferase class I and II RD12_RS13015 PF13458 Periplasmic binding protein RD12_RS13020 PF02653 Branched-chain amino acid transport system / permease component RD12_RS13025 PF02653 Branched-chain amino acid transport system / permease component RD12_RS13025 PF11862 Domain of unknown function (DUF3382) RD12_RS13030 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD12_RS13030 PF00005 ABC transporter RD12_RS13035 PF00005 ABC transporter RD12_RS13040 PF01177 Asp/Glu/Hydantoin racemase RD12_RS13055 PF00892 EamA-like transporter family RD12_RS13065 PF04235 Protein of unknown function (DUF418) RD12_RS13070 PF00521 DNA gyrase/topoisomerase IV, subunit A RD12_RS13080 PF00204 DNA gyrase B RD12_RS13080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS13080 PF01751 Toprim domain RD12_RS13080 PF00986 DNA gyrase B subunit, carboxyl terminus RD12_RS13085 PF00085 Thioredoxin RD12_RS13090 PF07497 Rho termination factor, RNA-binding domain RD12_RS13090 PF07498 Rho termination factor, N-terminal domain RD12_RS13090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD12_RS13100 PF03710 Glutamate-ammonia ligase adenylyltransferase RD12_RS13100 PF08335 GlnD PII-uridylyltransferase RD12_RS13105 PF02677 Epoxyqueuosine reductase QueH RD12_RS13110 PF03313 Serine dehydratase alpha chain RD12_RS13110 PF03315 Serine dehydratase beta chain RD12_RS13115 PF02690 Na+/Pi-cotransporter RD12_RS13120 PF01738 Dienelactone hydrolase family RD12_RS13130 PF00476 DNA polymerase family A RD12_RS13130 PF01612 3'-5' exonuclease RD12_RS13130 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RD12_RS13130 PF01367 5'-3' exonuclease, C-terminal SAM fold RD12_RS13135 PF03641 Possible lysine decarboxylase RD12_RS13150 PF03144 Elongation factor Tu domain 2 RD12_RS13150 PF00009 Elongation factor Tu GTP binding domain RD12_RS13150 PF00679 Elongation factor G C-terminus RD12_RS13155 PF01509 TruB family pseudouridylate synthase (N terminal domain) RD12_RS13155 PF16198 tRNA pseudouridylate synthase B C-terminal domain RD12_RS13160 PF02033 Ribosome-binding factor A RD12_RS13165 PF08364 Bacterial translation initiation factor IF-2 associated region RD12_RS13165 PF04760 Translation initiation factor IF-2, N-terminal region RD12_RS13165 PF11987 Translation-initiation factor 2 RD12_RS13165 PF00009 Elongation factor Tu GTP binding domain RD12_RS13170 PF08529 NusA N-terminal domain RD12_RS13170 PF13184 NusA-like KH domain RD12_RS13175 PF17384 RimP C-terminal SH3 domain RD12_RS13175 PF02576 RimP N-terminal domain RD12_RS13180 PF00849 RNA pseudouridylate synthase RD12_RS13180 PF01479 S4 domain RD12_RS13185 PF04079 Segregation and condensation complex subunit ScpB RD12_RS13195 PF03466 LysR substrate binding domain RD12_RS13195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS13200 PF00881 Nitroreductase family RD12_RS13205 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD12_RS13205 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD12_RS13225 PF14497 Glutathione S-transferase, C-terminal domain RD12_RS13225 PF02798 Glutathione S-transferase, N-terminal domain RD12_RS13230 PF02401 LytB protein RD12_RS13235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD12_RS13240 PF04002 RadC-like JAB domain RD12_RS13245 PF04199 Putative cyclase RD12_RS13250 PF03301 Tryptophan 2,3-dioxygenase RD12_RS13255 PF01197 Ribosomal protein L31 RD12_RS13265 PF01554 MatE RD12_RS13280 PF18073 Rubredoxin metal binding domain RD12_RS13285 PF12450 von Willebrand factor RD12_RS13285 PF12034 Domain of unknown function (DUF3520) RD12_RS13285 PF00092 von Willebrand factor type A domain RD12_RS13290 PF04545 Sigma-70, region 4 RD12_RS13290 PF04542 Sigma-70 region 2 RD12_RS13310 PF00842 Alanine racemase, C-terminal domain RD12_RS13310 PF01168 Alanine racemase, N-terminal domain RD12_RS13325 PF01593 Flavin containing amine oxidoreductase RD12_RS13325 PF01593 Flavin containing amine oxidoreductase RD12_RS13330 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD12_RS13340 PF01061 ABC-2 type transporter RD12_RS13345 PF00005 ABC transporter RD12_RS13365 PF02424 ApbE family RD12_RS13370 PF00175 Oxidoreductase NAD-binding domain RD12_RS13370 PF00667 FAD binding domain RD12_RS13370 PF00258 Flavodoxin RD12_RS13380 PF07969 Amidohydrolase family RD12_RS13385 PF03466 LysR substrate binding domain RD12_RS13385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS13395 PF09370 Phosphoenolpyruvate hydrolase-like RD12_RS13410 PF03797 Autotransporter beta-domain RD12_RS13410 PF03212 Pertactin RD12_RS13415 PF03797 Autotransporter beta-domain RD12_RS13415 PF03212 Pertactin RD12_RS13425 PF07724 AAA domain (Cdc48 subfamily) RD12_RS13425 PF02861 Clp amino terminal domain, pathogenicity island component RD12_RS13425 PF10431 C-terminal, D2-small domain, of ClpB protein RD12_RS13425 PF00004 ATPase family associated with various cellular activities (AAA) RD12_RS13425 PF17871 AAA lid domain RD12_RS13430 PF13545 Crp-like helix-turn-helix domain RD12_RS13430 PF00027 Cyclic nucleotide-binding domain RD12_RS13445 PF00293 NUDIX domain RD12_RS13450 PF12843 Putative quorum-sensing-regulated virulence factor RD12_RS13460 PF12680 SnoaL-like domain RD12_RS13460 PF08281 Sigma-70, region 4 RD12_RS13460 PF04542 Sigma-70 region 2 RD12_RS13465 PF02627 Carboxymuconolactone decarboxylase family RD12_RS13495 PF00155 Aminotransferase class I and II RD12_RS13500 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS13505 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS13510 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS13515 PF00005 ABC transporter RD12_RS13540 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD12_RS13565 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS13570 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD12_RS13570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD12_RS13575 PF03466 LysR substrate binding domain RD12_RS13575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS13585 PF17676 LD-carboxypeptidase C-terminal domain RD12_RS13585 PF02016 LD-carboxypeptidase N-terminal domain RD12_RS13600 PF07690 Major Facilitator Superfamily RD12_RS13610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS13610 PF03466 LysR substrate binding domain RD12_RS13615 PF13378 Enolase C-terminal domain-like RD12_RS13615 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RD12_RS13620 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS13640 PF02567 Phenazine biosynthesis-like protein RD12_RS13650 PF03239 Iron permease FTR1 family RD12_RS13660 PF10634 Fe2+ transport protein RD12_RS13665 PF07879 PHB/PHA accumulation regulator DNA-binding domain RD12_RS13665 PF05233 PHB accumulation regulatory domain RD12_RS13670 PF00106 short chain dehydrogenase RD12_RS13675 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RD12_RS13680 PF02578 Multi-copper polyphenol oxidoreductase laccase RD12_RS13685 PF00849 RNA pseudouridylate synthase RD12_RS13685 PF01479 S4 domain RD12_RS13690 PF13525 Outer membrane lipoprotein RD12_RS13695 PF04851 Type III restriction enzyme, res subunit RD12_RS13695 PF13307 Helicase C-terminal domain RD12_RS13700 PF09371 Tex-like protein N-terminal domain RD12_RS13700 PF00575 S1 RNA binding domain RD12_RS13700 PF17674 HHH domain RD12_RS13700 PF16921 Tex protein YqgF-like domain RD12_RS13705 PF00579 tRNA synthetases class I (W and Y) RD12_RS13725 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS13735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS13735 PF03466 LysR substrate binding domain RD12_RS13745 PF03969 AFG1-like ATPase RD12_RS13750 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD12_RS13750 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS13755 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD12_RS13755 PF00364 Biotin-requiring enzyme RD12_RS13755 PF02817 e3 binding domain RD12_RS13760 PF16078 2-oxoglutarate dehydrogenase N-terminus RD12_RS13760 PF00676 Dehydrogenase E1 component RD12_RS13760 PF16870 2-oxoglutarate dehydrogenase C-terminal RD12_RS13760 PF02779 Transketolase, pyrimidine binding domain RD12_RS13765 PF03169 OPT oligopeptide transporter protein RD12_RS13770 PF03169 OPT oligopeptide transporter protein RD12_RS13775 PF01037 Lrp/AsnC ligand binding domain RD12_RS13780 PF17831 Pyruvate dehydrogenase E1 component middle domain RD12_RS13780 PF00456 Transketolase, thiamine diphosphate binding domain RD12_RS13785 PF01515 Phosphate acetyl/butaryl transferase RD12_RS13785 PF03949 Malic enzyme, NAD binding domain RD12_RS13785 PF00390 Malic enzyme, N-terminal domain RD12_RS13790 PF16970 Type-1 fimbrial protein, A RD12_RS13800 PF01272 Transcription elongation factor, GreA/GreB, C-term RD12_RS13800 PF03449 Transcription elongation factor, N-terminal RD12_RS13805 PF02811 PHP domain RD12_RS13840 PF01026 TatD related DNase RD12_RS13845 PF00005 ABC transporter RD12_RS13850 PF02687 FtsX-like permease family RD12_RS13850 PF12704 MacB-like periplasmic core domain RD12_RS13860 PF01368 DHH family RD12_RS13860 PF17768 RecJ OB domain RD12_RS13860 PF02272 DHHA1 domain RD12_RS13865 PF03462 PCRF domain RD12_RS13865 PF00472 RF-1 domain RD12_RS13870 PF00106 short chain dehydrogenase RD12_RS13875 PF00152 tRNA synthetases class II (D, K and N) RD12_RS13875 PF01336 OB-fold nucleic acid binding domain RD12_RS13885 PF00440 Bacterial regulatory proteins, tetR family RD12_RS13885 PF17932 Tetracyclin repressor-like, C-terminal domain RD12_RS13890 PF00501 AMP-binding enzyme RD12_RS13895 PF00005 ABC transporter RD12_RS13915 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD12_RS13915 PF00005 ABC transporter RD12_RS13925 PF07689 KaiB domain RD12_RS13925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS13925 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS13930 PF00486 Transcriptional regulatory protein, C terminal RD12_RS13930 PF00072 Response regulator receiver domain RD12_RS13935 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RD12_RS13945 PF03631 Virulence factor BrkB RD12_RS13960 PF01207 Dihydrouridine synthase (Dus) RD12_RS13965 PF01636 Phosphotransferase enzyme family RD12_RS13985 PF01985 CRS1 / YhbY (CRM) domain RD12_RS13990 PF01728 FtsJ-like methyltransferase RD12_RS13995 PF06480 FtsH Extracellular RD12_RS13995 PF01434 Peptidase family M41 RD12_RS13995 PF17862 AAA+ lid domain RD12_RS13995 PF00004 ATPase family associated with various cellular activities (AAA) RD12_RS14000 PF00809 Pterin binding enzyme RD12_RS14005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD12_RS14005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD12_RS14005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD12_RS14005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD12_RS14015 PF02541 Ppx/GppA phosphatase family RD12_RS14020 PF13089 Polyphosphate kinase N-terminal domain RD12_RS14020 PF13090 Polyphosphate kinase C-terminal domain 2 RD12_RS14020 PF17941 Polyphosphate kinase C-terminal domain 1 RD12_RS14020 PF02503 Polyphosphate kinase middle domain RD12_RS14025 PF12849 PBP superfamily domain RD12_RS14030 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS14035 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS14040 PF00005 ABC transporter RD12_RS14055 PF01337 Barstar (barnase inhibitor) RD12_RS14065 PF00390 Malic enzyme, N-terminal domain RD12_RS14065 PF03949 Malic enzyme, NAD binding domain RD12_RS14065 PF01515 Phosphate acetyl/butaryl transferase RD12_RS14075 PF00155 Aminotransferase class I and II RD12_RS14080 PF01464 Transglycosylase SLT domain RD12_RS14080 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RD12_RS14085 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RD12_RS14110 PF10414 Sirohaem synthase dimerisation region RD12_RS14110 PF14824 Sirohaem biosynthesis protein central RD12_RS14110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD12_RS14115 PF03212 Pertactin RD12_RS14115 PF03797 Autotransporter beta-domain RD12_RS14130 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RD12_RS14135 PF02547 Queuosine biosynthesis protein RD12_RS14140 PF01702 Queuine tRNA-ribosyltransferase RD12_RS14145 PF02699 Preprotein translocase subunit RD12_RS14150 PF13721 SecD export protein N-terminal TM region RD12_RS14150 PF02355 Protein export membrane protein RD12_RS14150 PF07549 SecD/SecF GG Motif RD12_RS14155 PF02355 Protein export membrane protein RD12_RS14155 PF07549 SecD/SecF GG Motif RD12_RS14170 PF04055 Radical SAM superfamily RD12_RS14170 PF01938 TRAM domain RD12_RS14170 PF00919 Uncharacterized protein family UPF0004 RD12_RS14175 PF02562 PhoH-like protein RD12_RS14180 PF02130 Uncharacterized protein family UPF0054 RD12_RS14185 PF03471 Transporter associated domain RD12_RS14185 PF00571 CBS domain RD12_RS14190 PF00795 Carbon-nitrogen hydrolase RD12_RS14195 PF00248 Aldo/keto reductase family RD12_RS14220 PF04344 Chemotaxis phosphatase, CheZ RD12_RS14225 PF00072 Response regulator receiver domain RD12_RS14230 PF00072 Response regulator receiver domain RD12_RS14230 PF01339 CheB methylesterase RD12_RS14240 PF00672 HAMP domain RD12_RS14240 PF02203 Tar ligand binding domain homologue RD12_RS14240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD12_RS14245 PF01584 CheW-like domain RD12_RS14250 PF01627 Hpt domain RD12_RS14250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS14250 PF01584 CheW-like domain RD12_RS14250 PF02895 Signal transducing histidine kinase, homodimeric domain RD12_RS14250 PF09078 CheY binding RD12_RS14255 PF00072 Response regulator receiver domain RD12_RS14260 PF00691 OmpA family RD12_RS14260 PF13677 Membrane MotB of proton-channel complex MotA/MotB RD12_RS14265 PF01618 MotA/TolQ/ExbB proton channel family RD12_RS14270 PF05280 Flagellar transcriptional activator (FlhC) RD12_RS14275 PF05247 Flagellar transcriptional activator (FlhD) RD12_RS14280 PF04545 Sigma-70, region 4 RD12_RS14280 PF04539 Sigma-70 region 3 RD12_RS14280 PF04542 Sigma-70 region 2 RD12_RS14290 PF01176 Translation initiation factor 1A / IF-1 RD12_RS14300 PF01551 Peptidase family M23 RD12_RS14300 PF08525 Opacity-associated protein A N-terminal motif RD12_RS14300 PF01476 LysM domain RD12_RS14310 PF00994 Probable molybdopterin binding domain RD12_RS14320 PF03591 AzlC protein RD12_RS14330 PF01556 DnaJ C terminal domain RD12_RS14330 PF00226 DnaJ domain RD12_RS14350 PF02798 Glutathione S-transferase, N-terminal domain RD12_RS14350 PF14834 Glutathione S-transferase, C-terminal domain RD12_RS14355 PF11339 Protein of unknown function (DUF3141) RD12_RS14360 PF01515 Phosphate acetyl/butaryl transferase RD12_RS14365 PF00871 Acetokinase family RD12_RS14375 PF00162 Phosphoglycerate kinase RD12_RS14380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD12_RS14380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RD12_RS14385 PF02779 Transketolase, pyrimidine binding domain RD12_RS14385 PF02780 Transketolase, C-terminal domain RD12_RS14385 PF00456 Transketolase, thiamine diphosphate binding domain RD12_RS14390 PF04452 RNA methyltransferase RD12_RS14400 PF00669 Bacterial flagellin N-terminal helical region RD12_RS14400 PF00700 Bacterial flagellin C-terminal helical region RD12_RS14405 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS14405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD12_RS14415 PF00456 Transketolase, thiamine diphosphate binding domain RD12_RS14415 PF17831 Pyruvate dehydrogenase E1 component middle domain RD12_RS14420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS14420 PF00989 PAS fold RD12_RS14420 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS14425 PF00072 Response regulator receiver domain RD12_RS14425 PF00196 Bacterial regulatory proteins, luxR family RD12_RS14430 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD12_RS14430 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD12_RS14435 PF01432 Peptidase family M3 RD12_RS14440 PF02630 SCO1/SenC RD12_RS14450 PF02321 Outer membrane efflux protein RD12_RS14455 PF00873 AcrB/AcrD/AcrF family RD12_RS14460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD12_RS14460 PF00529 HlyD membrane-fusion protein of T1SS RD12_RS14465 PF03466 LysR substrate binding domain RD12_RS14465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS14470 PF01479 S4 domain RD12_RS14470 PF00849 RNA pseudouridylate synthase RD12_RS14475 PF04345 Chorismate lyase RD12_RS14480 PF07690 Major Facilitator Superfamily RD12_RS14490 PF00248 Aldo/keto reductase family RD12_RS14500 PF00293 NUDIX domain RD12_RS14505 PF01245 Ribosomal protein L19 RD12_RS14520 PF04055 Radical SAM superfamily RD12_RS14530 PF01507 Phosphoadenosine phosphosulfate reductase family RD12_RS14535 PF01507 Phosphoadenosine phosphosulfate reductase family RD12_RS14540 PF17850 CysA C-terminal regulatory domain RD12_RS14540 PF12857 TOBE-like domain RD12_RS14540 PF00005 ABC transporter RD12_RS14545 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS14550 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS14565 PF10417 C-terminal domain of 1-Cys peroxiredoxin RD12_RS14565 PF00578 AhpC/TSA family RD12_RS14570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS14570 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS14570 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD12_RS14570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS14575 PF00766 Electron transfer flavoprotein FAD-binding domain RD12_RS14575 PF01012 Electron transfer flavoprotein domain RD12_RS14580 PF01012 Electron transfer flavoprotein domain RD12_RS14585 PF00850 Histone deacetylase domain RD12_RS14590 PF13406 Transglycosylase SLT domain RD12_RS14595 PF00291 Pyridoxal-phosphate dependent enzyme RD12_RS14605 PF10531 SLBB domain RD12_RS14610 PF01370 NAD dependent epimerase/dehydratase family RD12_RS14615 PF00294 pfkB family carbohydrate kinase RD12_RS14620 PF18073 Rubredoxin metal binding domain RD12_RS14630 PF00216 Bacterial DNA-binding protein RD12_RS14635 PF00575 S1 RNA binding domain RD12_RS14640 PF02224 Cytidylate kinase RD12_RS14645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD12_RS14650 PF02153 Prephenate dehydrogenase RD12_RS14655 PF01842 ACT domain RD12_RS14655 PF01817 Chorismate mutase type II RD12_RS14655 PF00800 Prephenate dehydratase RD12_RS14660 PF00266 Aminotransferase class-V RD12_RS14665 PF03989 DNA gyrase C-terminal domain, beta-propeller RD12_RS14665 PF00521 DNA gyrase/topoisomerase IV, subunit A RD12_RS14670 PF00691 OmpA family RD12_RS14680 PF13419 Haloacid dehalogenase-like hydrolase RD12_RS14685 PF07690 Major Facilitator Superfamily RD12_RS14710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS14710 PF03466 LysR substrate binding domain RD12_RS14715 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS14725 PF11798 IMS family HHH motif RD12_RS14725 PF00817 impB/mucB/samB family RD12_RS14725 PF11799 impB/mucB/samB family C-terminal domain RD12_RS14735 PF00326 Prolyl oligopeptidase family RD12_RS14740 PF00905 Penicillin binding protein transpeptidase domain RD12_RS14740 PF00912 Transglycosylase RD12_RS14740 PF17092 Penicillin-binding protein OB-like domain RD12_RS14745 PF00149 Calcineurin-like phosphoesterase RD12_RS14760 PF00248 Aldo/keto reductase family RD12_RS14765 PF00248 Aldo/keto reductase family RD12_RS14770 PF00005 ABC transporter RD12_RS14770 PF00664 ABC transporter transmembrane region RD12_RS14815 PF01039 Carboxyl transferase domain RD12_RS14820 PF02785 Biotin carboxylase C-terminal domain RD12_RS14820 PF00289 Biotin carboxylase, N-terminal domain RD12_RS14820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD12_RS14825 PF07702 UTRA domain RD12_RS14825 PF00392 Bacterial regulatory proteins, gntR family RD12_RS14845 PF00682 HMGL-like RD12_RS14845 PF02436 Conserved carboxylase domain RD12_RS14845 PF00364 Biotin-requiring enzyme RD12_RS14850 PF00364 Biotin-requiring enzyme RD12_RS14860 PF01966 HD domain RD12_RS14880 PF07317 Flagellar regulator YcgR RD12_RS14880 PF07238 PilZ domain RD12_RS14895 PF05724 Thiopurine S-methyltransferase (TPMT) RD12_RS14900 PF00005 ABC transporter RD12_RS14900 PF00664 ABC transporter transmembrane region RD12_RS14915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD12_RS14915 PF00205 Thiamine pyrophosphate enzyme, central domain RD12_RS14915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD12_RS14920 PF10369 Small subunit of acetolactate synthase RD12_RS14925 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RD12_RS14925 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RD12_RS14930 PF01066 CDP-alcohol phosphatidyltransferase RD12_RS14940 PF00312 Ribosomal protein S15 RD12_RS14945 PF03725 3' exoribonuclease family, domain 2 RD12_RS14945 PF00575 S1 RNA binding domain RD12_RS14945 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RD12_RS14945 PF00013 KH domain RD12_RS14945 PF01138 3' exoribonuclease family, domain 1 RD12_RS14960 PF00291 Pyridoxal-phosphate dependent enzyme RD12_RS14960 PF13291 ACT domain RD12_RS14975 PF08659 KR domain RD12_RS14975 PF16197 Ketoacyl-synthetase C-terminal extension RD12_RS14975 PF00109 Beta-ketoacyl synthase, N-terminal domain RD12_RS14975 PF14765 Polyketide synthase dehydratase RD12_RS14975 PF08990 Erythronolide synthase docking RD12_RS14975 PF08240 Alcohol dehydrogenase GroES-like domain RD12_RS14975 PF00698 Acyl transferase domain RD12_RS14975 PF02801 Beta-ketoacyl synthase, C-terminal domain RD12_RS14975 PF00550 Phosphopantetheine attachment site RD12_RS14980 PF00121 Triosephosphate isomerase RD12_RS14985 PF03840 Preprotein translocase SecG subunit RD12_RS14995 PF02028 BCCT, betaine/carnitine/choline family transporter RD12_RS15005 PF07476 Methylaspartate ammonia-lyase C-terminus RD12_RS15005 PF05034 Methylaspartate ammonia-lyase N-terminus RD12_RS15010 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS15025 PF14698 Argininosuccinate lyase C-terminal RD12_RS15025 PF00206 Lyase RD12_RS15030 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS15045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS15045 PF03466 LysR substrate binding domain RD12_RS15050 PF01053 Cys/Met metabolism PLP-dependent enzyme RD12_RS15055 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD12_RS15070 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS15075 PF01266 FAD dependent oxidoreductase RD12_RS15085 PF05378 Hydantoinase/oxoprolinase N-terminal region RD12_RS15085 PF01968 Hydantoinase/oxoprolinase RD12_RS15095 PF00127 Copper binding proteins, plastocyanin/azurin family RD12_RS15105 PF02321 Outer membrane efflux protein RD12_RS15110 PF00873 AcrB/AcrD/AcrF family RD12_RS15115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD12_RS15120 PF01638 HxlR-like helix-turn-helix RD12_RS15130 PF02028 BCCT, betaine/carnitine/choline family transporter RD12_RS15135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS15135 PF03466 LysR substrate binding domain RD12_RS15140 PF00781 Diacylglycerol kinase catalytic domain RD12_RS15150 PF01569 PAP2 superfamily RD12_RS15175 PF13609 Gram-negative porin RD12_RS15180 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RD12_RS15185 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RD12_RS15190 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RD12_RS15195 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RD12_RS15205 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RD12_RS15205 PF10531 SLBB domain RD12_RS15205 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RD12_RS15210 PF00384 Molybdopterin oxidoreductase RD12_RS15210 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RD12_RS15210 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RD12_RS15215 PF00146 NADH dehydrogenase RD12_RS15220 PF12838 4Fe-4S dicluster domain RD12_RS15225 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RD12_RS15230 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD12_RS15235 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD12_RS15235 PF00361 Proton-conducting membrane transporter RD12_RS15240 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus RD12_RS15240 PF00361 Proton-conducting membrane transporter RD12_RS15245 PF00361 Proton-conducting membrane transporter RD12_RS15255 PF00593 TonB dependent receptor RD12_RS15255 PF07715 TonB-dependent Receptor Plug Domain RD12_RS15260 PF00593 TonB dependent receptor RD12_RS15260 PF07715 TonB-dependent Receptor Plug Domain RD12_RS15275 PF00205 Thiamine pyrophosphate enzyme, central domain RD12_RS15275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD12_RS15275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD12_RS15280 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS15285 PF03466 LysR substrate binding domain RD12_RS15285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS15295 PF02559 CarD-like/TRCF domain RD12_RS15295 PF00270 DEAD/DEAH box helicase RD12_RS15295 PF17757 UvrB interaction domain RD12_RS15295 PF00271 Helicase conserved C-terminal domain RD12_RS15295 PF03461 TRCF domain RD12_RS15300 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RD12_RS15305 PF02542 YgbB family RD12_RS15315 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RD12_RS15320 PF11940 Domain of unknown function (DUF3458) Ig-like fold RD12_RS15320 PF01433 Peptidase family M1 domain RD12_RS15320 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RD12_RS15340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD12_RS15340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD12_RS15340 PF00205 Thiamine pyrophosphate enzyme, central domain RD12_RS15350 PF09084 NMT1/THI5 like RD12_RS15355 PF00005 ABC transporter RD12_RS15360 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS15370 PF00501 AMP-binding enzyme RD12_RS15370 PF13193 AMP-binding enzyme C-terminal domain RD12_RS15375 PF08240 Alcohol dehydrogenase GroES-like domain RD12_RS15375 PF00107 Zinc-binding dehydrogenase RD12_RS15380 PF00392 Bacterial regulatory proteins, gntR family RD12_RS15380 PF07729 FCD domain RD12_RS15390 PF00392 Bacterial regulatory proteins, gntR family RD12_RS15390 PF07729 FCD domain RD12_RS15395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD12_RS15395 PF00205 Thiamine pyrophosphate enzyme, central domain RD12_RS15395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD12_RS15415 PF01063 Amino-transferase class IV RD12_RS15420 PF00005 ABC transporter RD12_RS15425 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS15435 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS15440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS15440 PF03466 LysR substrate binding domain RD12_RS15445 PF02321 Outer membrane efflux protein RD12_RS15450 PF13533 Biotin-lipoyl like RD12_RS15455 PF00664 ABC transporter transmembrane region RD12_RS15455 PF00005 ABC transporter RD12_RS15455 PF03412 Peptidase C39 family RD12_RS15460 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RD12_RS15460 PF03497 Anthrax toxin LF subunit RD12_RS15460 PF02382 N-terminal domain in RTX protein RD12_RS15470 PF02794 RTX toxin acyltransferase family RD12_RS15475 PF00171 Aldehyde dehydrogenase family RD12_RS15485 PF01266 FAD dependent oxidoreductase RD12_RS15490 PF02538 Hydantoinase B/oxoprolinase RD12_RS15495 PF05378 Hydantoinase/oxoprolinase N-terminal region RD12_RS15495 PF01968 Hydantoinase/oxoprolinase RD12_RS15500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS15500 PF03466 LysR substrate binding domain RD12_RS15510 PF00348 Polyprenyl synthetase RD12_RS15520 PF00829 Ribosomal prokaryotic L21 protein RD12_RS15525 PF01016 Ribosomal L27 protein RD12_RS15530 PF01018 GTP1/OBG RD12_RS15530 PF01926 50S ribosome-binding GTPase RD12_RS15535 PF01472 PUA domain RD12_RS15535 PF00696 Amino acid kinase family RD12_RS15580 PF16220 Domain of unknown function (DUF4880) RD12_RS15580 PF04773 FecR protein RD12_RS15585 PF07715 TonB-dependent Receptor Plug Domain RD12_RS15585 PF00593 TonB dependent receptor RD12_RS15590 PF04264 YceI-like domain RD12_RS15605 PF16653 Saccharopine dehydrogenase C-terminal domain RD12_RS15605 PF03435 Saccharopine dehydrogenase NADP binding domain RD12_RS15610 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD12_RS15630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS15635 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS15640 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS15645 PF00005 ABC transporter RD12_RS15645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS15650 PF01425 Amidase RD12_RS15655 PF00202 Aminotransferase class-III RD12_RS15675 PF04972 BON domain RD12_RS15675 PF00691 OmpA family RD12_RS15680 PF01329 Pterin 4 alpha carbinolamine dehydratase RD12_RS15690 PF00483 Nucleotidyl transferase RD12_RS15695 PF01636 Phosphotransferase enzyme family RD12_RS15700 PF04453 LPS transport system D RD12_RS15705 PF00639 PPIC-type PPIASE domain RD12_RS15705 PF09312 SurA N-terminal domain RD12_RS15710 PF00398 Ribosomal RNA adenine dimethylase RD12_RS15715 PF02595 Glycerate kinase family RD12_RS15720 PF02887 Pyruvate kinase, alpha/beta domain RD12_RS15720 PF00224 Pyruvate kinase, barrel domain RD12_RS15725 PF07670 Nucleoside recognition RD12_RS15730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS15730 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS15730 PF09317 Domain of unknown function (DUF1974) RD12_RS15730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS15745 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS15750 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS15755 PF00005 ABC transporter RD12_RS15760 PF01032 FecCD transport family RD12_RS15770 PF00691 OmpA family RD12_RS15775 PF04052 TolB amino-terminal domain RD12_RS15775 PF07676 WD40-like Beta Propeller Repeat RD12_RS15785 PF02472 Biopolymer transport protein ExbD/TolR RD12_RS15790 PF01618 MotA/TolQ/ExbB proton channel family RD12_RS15795 PF03061 Thioesterase superfamily RD12_RS15800 PF03129 Anticodon binding domain RD12_RS15800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD12_RS15800 PF04073 Aminoacyl-tRNA editing domain RD12_RS15805 PF00293 NUDIX domain RD12_RS15810 PF00486 Transcriptional regulatory protein, C terminal RD12_RS15810 PF00072 Response regulator receiver domain RD12_RS15820 PF02586 SOS response associated peptidase (SRAP) RD12_RS15885 PF06791 Prophage tail length tape measure protein RD12_RS16025 PF03180 NLPA lipoprotein RD12_RS16035 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RD12_RS16035 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RD12_RS16040 PF00005 ABC transporter RD12_RS16045 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD12_RS16045 PF00005 ABC transporter RD12_RS16050 PF02653 Branched-chain amino acid transport system / permease component RD12_RS16055 PF02653 Branched-chain amino acid transport system / permease component RD12_RS16060 PF13458 Periplasmic binding protein RD12_RS16065 PF01425 Amidase RD12_RS16070 PF00484 Carbonic anhydrase RD12_RS16085 PF09382 RQC domain RD12_RS16085 PF16124 RecQ zinc-binding RD12_RS16085 PF00270 DEAD/DEAH box helicase RD12_RS16085 PF00271 Helicase conserved C-terminal domain RD12_RS16085 PF00570 HRDC domain RD12_RS16090 PF05491 RuvB C-terminal winged helix domain RD12_RS16090 PF17864 RuvB AAA lid domain RD12_RS16090 PF05496 Holliday junction DNA helicase RuvB P-loop domain RD12_RS16095 PF00291 Pyridoxal-phosphate dependent enzyme RD12_RS16100 PF01370 NAD dependent epimerase/dehydratase family RD12_RS16105 PF07499 RuvA, C-terminal domain RD12_RS16105 PF01330 RuvA N terminal domain RD12_RS16110 PF02075 Crossover junction endodeoxyribonuclease RuvC RD12_RS16115 PF01808 AICARFT/IMPCHase bienzyme RD12_RS16115 PF02142 MGS-like domain RD12_RS16120 PF02954 Bacterial regulatory protein, Fis family RD12_RS16125 PF01207 Dihydrouridine synthase (Dus) RD12_RS16130 PF01494 FAD binding domain RD12_RS16140 PF05195 Aminopeptidase P, N-terminal domain RD12_RS16140 PF00557 Metallopeptidase family M24 RD12_RS16165 PF13609 Gram-negative porin RD12_RS16175 PF00483 Nucleotidyl transferase RD12_RS16180 PF13181 Tetratricopeptide repeat RD12_RS16180 PF01435 Peptidase family M48 RD12_RS16185 PF00561 alpha/beta hydrolase fold RD12_RS16200 PF01063 Amino-transferase class IV RD12_RS16215 PF00271 Helicase conserved C-terminal domain RD12_RS16215 PF00270 DEAD/DEAH box helicase RD12_RS16235 PF02464 Competence-damaged protein RD12_RS16235 PF18146 Damage-inducible protein CinA KH domain RD12_RS16235 PF00994 Probable molybdopterin binding domain RD12_RS16240 PF09339 IclR helix-turn-helix domain RD12_RS16240 PF01614 Bacterial transcriptional regulator RD12_RS16245 PF05785 Rho-activating domain of cytotoxic necrotizing factor RD12_RS16245 PF18807 Tripartite Tc toxins repeat RD12_RS16250 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS16260 PF01180 Dihydroorotate dehydrogenase RD12_RS16265 PF04377 Arginine-tRNA-protein transferase, C terminus RD12_RS16265 PF04376 Arginine-tRNA-protein transferase, N terminus RD12_RS16270 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RD12_RS16280 PF03466 LysR substrate binding domain RD12_RS16280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS16320 PF07729 FCD domain RD12_RS16320 PF00392 Bacterial regulatory proteins, gntR family RD12_RS16325 PF00205 Thiamine pyrophosphate enzyme, central domain RD12_RS16325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD12_RS16325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD12_RS16330 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS16335 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD12_RS16340 PF01515 Phosphate acetyl/butaryl transferase RD12_RS16340 PF03949 Malic enzyme, NAD binding domain RD12_RS16340 PF00390 Malic enzyme, N-terminal domain RD12_RS16350 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS16355 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS16360 PF00005 ABC transporter RD12_RS16360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS16375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS16375 PF03466 LysR substrate binding domain RD12_RS16390 PF01022 Bacterial regulatory protein, arsR family RD12_RS16405 PF03594 Benzoate membrane transport protein RD12_RS16410 PF00037 4Fe-4S binding domain RD12_RS16415 PF01467 Cytidylyltransferase-like RD12_RS16425 PF00448 SRP54-type protein, GTPase domain RD12_RS16425 PF02881 SRP54-type protein, helical bundle domain RD12_RS16440 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS16445 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS16450 PF00005 ABC transporter RD12_RS16460 PF00005 ABC transporter RD12_RS16480 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD12_RS16480 PF00925 GTP cyclohydrolase II RD12_RS16485 PF00885 6,7-dimethyl-8-ribityllumazine synthase RD12_RS16490 PF01029 NusB family RD12_RS16495 PF02769 AIR synthase related protein, C-terminal domain RD12_RS16495 PF00586 AIR synthase related protein, N-terminal domain RD12_RS16500 PF04608 Phosphatidylglycerophosphatase A RD12_RS16505 PF02464 Competence-damaged protein RD12_RS16505 PF18146 Damage-inducible protein CinA KH domain RD12_RS16505 PF00994 Probable molybdopterin binding domain RD12_RS16510 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RD12_RS16515 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS16520 PF01219 Prokaryotic diacylglycerol kinase RD12_RS16525 PF03631 Virulence factor BrkB RD12_RS16530 PF03212 Pertactin RD12_RS16530 PF03797 Autotransporter beta-domain RD12_RS16535 PF00118 TCP-1/cpn60 chaperonin family RD12_RS16540 PF00166 Chaperonin 10 Kd subunit RD12_RS16560 PF00890 FAD binding domain RD12_RS16570 PF03466 LysR substrate binding domain RD12_RS16570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS16575 PF00890 FAD binding domain RD12_RS16595 PF00990 Diguanylate cyclase, GGDEF domain RD12_RS16600 PF00072 Response regulator receiver domain RD12_RS16630 PF03781 Sulfatase-modifying factor enzyme 1 RD12_RS16630 PF12867 DinB superfamily RD12_RS16635 PF10017 Histidine-specific methyltransferase, SAM-dependent RD12_RS16645 PF13091 PLD-like domain RD12_RS16645 PF13396 Phospholipase_D-nuclease N-terminal RD12_RS16655 PF01645 Conserved region in glutamate synthase RD12_RS16660 PF04143 Sulphur transport RD12_RS16665 PF03547 Membrane transport protein RD12_RS16670 PF13673 Acetyltransferase (GNAT) domain RD12_RS16690 PF08206 Ribonuclease B OB domain RD12_RS16690 PF08461 Ribonuclease R winged-helix domain RD12_RS16690 PF17876 Cold shock domain RD12_RS16690 PF00773 RNB domain RD12_RS16690 PF00575 S1 RNA binding domain RD12_RS16695 PF00588 SpoU rRNA Methylase family RD12_RS16695 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD12_RS16700 PF01053 Cys/Met metabolism PLP-dependent enzyme RD12_RS16705 PF18331 PKHD-type hydroxylase C-terminal domain RD12_RS16705 PF13640 2OG-Fe(II) oxygenase superfamily RD12_RS16710 PF00216 Bacterial DNA-binding protein RD12_RS16725 PF01618 MotA/TolQ/ExbB proton channel family RD12_RS16730 PF02472 Biopolymer transport protein ExbD/TolR RD12_RS16735 PF00486 Transcriptional regulatory protein, C terminal RD12_RS16735 PF00072 Response regulator receiver domain RD12_RS16740 PF08521 Two-component sensor kinase N-terminal RD12_RS16740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS16740 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS16745 PF02705 K+ potassium transporter RD12_RS16750 PF00764 Arginosuccinate synthase RD12_RS16755 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD12_RS16755 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD12_RS16760 PF00202 Aminotransferase class-III RD12_RS16770 PF03466 LysR substrate binding domain RD12_RS16770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS16780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD12_RS16780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD12_RS16785 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS16800 PF00392 Bacterial regulatory proteins, gntR family RD12_RS16800 PF07729 FCD domain RD12_RS16810 PF07690 Major Facilitator Superfamily RD12_RS16820 PF02627 Carboxymuconolactone decarboxylase family RD12_RS16825 PF00578 AhpC/TSA family RD12_RS16830 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS16830 PF00672 HAMP domain RD12_RS16830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS16840 PF00072 Response regulator receiver domain RD12_RS16840 PF00486 Transcriptional regulatory protein, C terminal RD12_RS16845 PF00814 Glycoprotease family RD12_RS16850 PF03167 Uracil DNA glycosylase superfamily RD12_RS16855 PF07690 Major Facilitator Superfamily RD12_RS16860 PF02463 RecF/RecN/SMC N terminal domain RD12_RS16860 PF06470 SMC proteins Flexible Hinge Domain RD12_RS16870 PF00533 BRCA1 C Terminus (BRCT) domain RD12_RS16870 PF03120 NAD-dependent DNA ligase OB-fold domain RD12_RS16870 PF01653 NAD-dependent DNA ligase adenylation domain RD12_RS16870 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RD12_RS16870 PF12826 Helix-hairpin-helix motif RD12_RS16885 PF04279 Intracellular septation protein A RD12_RS16890 PF01641 SelR domain RD12_RS16895 PF00005 ABC transporter RD12_RS16900 PF02361 Cobalt transport protein RD12_RS16905 PF02632 BioY family RD12_RS16920 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD12_RS16920 PF00005 ABC transporter RD12_RS16925 PF01063 Amino-transferase class IV RD12_RS16940 PF02653 Branched-chain amino acid transport system / permease component RD12_RS16950 PF00005 ABC transporter RD12_RS16955 PF00005 ABC transporter RD12_RS16955 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD12_RS16960 PF10576 Iron-sulfur binding domain of endonuclease III RD12_RS16960 PF00633 Helix-hairpin-helix motif RD12_RS16960 PF00730 HhH-GPD superfamily base excision DNA repair protein RD12_RS16965 PF04060 Putative Fe-S cluster RD12_RS16975 PF00970 Oxidoreductase FAD-binding domain RD12_RS16975 PF00175 Oxidoreductase NAD-binding domain RD12_RS16980 PF11953 Domain of unknown function (DUF3470) RD12_RS16980 PF00037 4Fe-4S binding domain RD12_RS16985 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RD12_RS16985 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RD12_RS16990 PF01042 Endoribonuclease L-PSP RD12_RS17000 PF06167 Glucose-regulated metallo-peptidase M90 RD12_RS17005 PF13291 ACT domain RD12_RS17005 PF04607 Region found in RelA / SpoT proteins RD12_RS17005 PF02824 TGS domain RD12_RS17010 PF01546 Peptidase family M20/M25/M40 RD12_RS17010 PF07687 Peptidase dimerisation domain RD12_RS17015 PF00291 Pyridoxal-phosphate dependent enzyme RD12_RS17020 PF00290 Tryptophan synthase alpha chain RD12_RS17025 PF01039 Carboxyl transferase domain RD12_RS17025 PF17848 Acetyl-coA carboxylase zinc finger domain RD12_RS17030 PF09411 Lipid A 3-O-deacylase (PagL) RD12_RS17045 PF12111 Polyribonucleotide phosphorylase C terminal RD12_RS17045 PF10150 Ribonuclease E/G family RD12_RS17045 PF00575 S1 RNA binding domain RD12_RS17050 PF00849 RNA pseudouridylate synthase RD12_RS17050 PF01479 S4 domain RD12_RS17055 PF13419 Haloacid dehalogenase-like hydrolase RD12_RS17060 PF00174 Oxidoreductase molybdopterin binding domain RD12_RS17065 PF01794 Ferric reductase like transmembrane component RD12_RS17075 PF02515 CoA-transferase family III RD12_RS17080 PF03466 LysR substrate binding domain RD12_RS17080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS17090 PF02515 CoA-transferase family III RD12_RS17110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS17110 PF03466 LysR substrate binding domain RD12_RS17115 PF01042 Endoribonuclease L-PSP RD12_RS17120 PF00175 Oxidoreductase NAD-binding domain RD12_RS17120 PF00042 Globin RD12_RS17120 PF00970 Oxidoreductase FAD-binding domain RD12_RS17125 PF02667 Short chain fatty acid transporter RD12_RS17130 PF00171 Aldehyde dehydrogenase family RD12_RS17135 PF00392 Bacterial regulatory proteins, gntR family RD12_RS17135 PF07729 FCD domain RD12_RS17145 PF00313 'Cold-shock' DNA-binding domain RD12_RS17150 PF03466 LysR substrate binding domain RD12_RS17150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS17170 PF00108 Thiolase, N-terminal domain RD12_RS17170 PF02803 Thiolase, C-terminal domain RD12_RS17180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS17180 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS17180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS17185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS17185 PF03466 LysR substrate binding domain RD12_RS17190 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS17195 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS17200 PF02515 CoA-transferase family III RD12_RS17205 PF03741 Integral membrane protein TerC family RD12_RS17205 PF03471 Transporter associated domain RD12_RS17210 PF02308 MgtC family RD12_RS17215 PF03764 Elongation factor G, domain IV RD12_RS17215 PF03144 Elongation factor Tu domain 2 RD12_RS17215 PF14492 Elongation Factor G, domain II RD12_RS17215 PF00009 Elongation factor Tu GTP binding domain RD12_RS17215 PF00679 Elongation factor G C-terminus RD12_RS17220 PF00392 Bacterial regulatory proteins, gntR family RD12_RS17220 PF00155 Aminotransferase class I and II RD12_RS17230 PF00582 Universal stress protein family RD12_RS17235 PF00679 Elongation factor G C-terminus RD12_RS17235 PF14492 Elongation Factor G, domain II RD12_RS17235 PF03764 Elongation factor G, domain IV RD12_RS17235 PF00009 Elongation factor Tu GTP binding domain RD12_RS17235 PF03144 Elongation factor Tu domain 2 RD12_RS17245 PF00701 Dihydrodipicolinate synthetase family RD12_RS17250 PF03466 LysR substrate binding domain RD12_RS17250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS17255 PF02515 CoA-transferase family III RD12_RS17260 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS17265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS17265 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS17265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS17270 PF01575 MaoC like domain RD12_RS17285 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD12_RS17285 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD12_RS17290 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS17295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS17295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS17295 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS17300 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS17305 PF13607 Succinyl-CoA ligase like flavodoxin domain RD12_RS17305 PF13380 CoA binding domain RD12_RS17315 PF00676 Dehydrogenase E1 component RD12_RS17320 PF02780 Transketolase, C-terminal domain RD12_RS17320 PF02779 Transketolase, pyrimidine binding domain RD12_RS17325 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS17330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD12_RS17330 PF00364 Biotin-requiring enzyme RD12_RS17330 PF02817 e3 binding domain RD12_RS17335 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS17335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS17335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS17340 PF13193 AMP-binding enzyme C-terminal domain RD12_RS17340 PF00501 AMP-binding enzyme RD12_RS17350 PF13458 Periplasmic binding protein RD12_RS17355 PF02653 Branched-chain amino acid transport system / permease component RD12_RS17360 PF00005 ABC transporter RD12_RS17360 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD12_RS17365 PF00005 ABC transporter RD12_RS17370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD12_RS17370 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS17385 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS17400 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS17410 PF00899 ThiF family RD12_RS17415 PF13180 PDZ domain RD12_RS17415 PF03572 Peptidase family S41 RD12_RS17420 PF01551 Peptidase family M23 RD12_RS17425 PF00300 Histidine phosphatase superfamily (branch 1) RD12_RS17430 PF17773 UPF0176 acylphosphatase like domain RD12_RS17430 PF00581 Rhodanese-like domain RD12_RS17430 PF12368 Rhodanase C-terminal RD12_RS17435 PF00462 Glutaredoxin RD12_RS17440 PF02556 Preprotein translocase subunit SecB RD12_RS17445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RD12_RS17445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RD12_RS17450 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS17455 PF00588 SpoU rRNA Methylase family RD12_RS17465 PF08241 Methyltransferase domain RD12_RS17470 PF04107 Glutamate-cysteine ligase family 2(GCS2) RD12_RS17475 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD12_RS17485 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS17490 PF00005 ABC transporter RD12_RS17500 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS17500 PF01799 [2Fe-2S] binding domain RD12_RS17505 PF00941 FAD binding domain in molybdopterin dehydrogenase RD12_RS17505 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD12_RS17510 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD12_RS17510 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD12_RS17515 PF03480 Bacterial extracellular solute-binding protein, family 7 RD12_RS17520 PF00355 Rieske [2Fe-2S] domain RD12_RS17525 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS17525 PF14759 Reductase C-terminal RD12_RS17530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD12_RS17530 PF00355 Rieske [2Fe-2S] domain RD12_RS17540 PF00857 Isochorismatase family RD12_RS17550 PF00561 alpha/beta hydrolase fold RD12_RS17555 PF17645 Arylmalonate decarboxylase RD12_RS17565 PF12804 MobA-like NTP transferase domain RD12_RS17575 PF01047 MarR family RD12_RS17580 PF02386 Cation transport protein RD12_RS17585 PF02080 TrkA-C domain RD12_RS17585 PF02254 TrkA-N domain RD12_RS17590 PF00158 Sigma-54 interaction domain RD12_RS17590 PF02954 Bacterial regulatory protein, Fis family RD12_RS17590 PF00072 Response regulator receiver domain RD12_RS17595 PF00989 PAS fold RD12_RS17595 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS17595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS17595 PF00672 HAMP domain RD12_RS17605 PF01029 NusB family RD12_RS17605 PF01189 16S rRNA methyltransferase RsmB/F RD12_RS17615 PF03447 Homoserine dehydrogenase, NAD binding domain RD12_RS17615 PF01958 Domain of unknown function DUF108 RD12_RS17635 PF01810 LysE type translocator RD12_RS17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS17640 PF03466 LysR substrate binding domain RD12_RS17650 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS17655 PF01168 Alanine racemase, N-terminal domain RD12_RS17660 PF00155 Aminotransferase class I and II RD12_RS17665 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS17675 PF00682 HMGL-like RD12_RS17680 PF02481 DNA recombination-mediator protein A RD12_RS17680 PF17782 DprA winged helix domain RD12_RS17685 PF01037 Lrp/AsnC ligand binding domain RD12_RS17690 PF00266 Aminotransferase class-V RD12_RS17695 PF01327 Polypeptide deformylase RD12_RS17705 PF02911 Formyl transferase, C-terminal domain RD12_RS17705 PF00551 Formyl transferase RD12_RS17715 PF13419 Haloacid dehalogenase-like hydrolase RD12_RS17725 PF03641 Possible lysine decarboxylase RD12_RS17735 PF00919 Uncharacterized protein family UPF0004 RD12_RS17735 PF18693 TRAM domain RD12_RS17735 PF04055 Radical SAM superfamily RD12_RS17740 PF01361 Tautomerase enzyme RD12_RS17745 PF01266 FAD dependent oxidoreductase RD12_RS17750 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS17755 PF07729 FCD domain RD12_RS17755 PF00392 Bacterial regulatory proteins, gntR family RD12_RS17765 PF00202 Aminotransferase class-III RD12_RS17770 PF00491 Arginase family RD12_RS17780 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS17785 PF02627 Carboxymuconolactone decarboxylase family RD12_RS17790 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS17795 PF01614 Bacterial transcriptional regulator RD12_RS17795 PF09339 IclR helix-turn-helix domain RD12_RS17800 PF00501 AMP-binding enzyme RD12_RS17800 PF13193 AMP-binding enzyme C-terminal domain RD12_RS17805 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS17815 PF12951 Passenger-associated-transport-repeat RD12_RS17815 PF12951 Passenger-associated-transport-repeat RD12_RS17835 PF03466 LysR substrate binding domain RD12_RS17835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS17845 PF14031 Putative serine dehydratase domain RD12_RS17845 PF01168 Alanine racemase, N-terminal domain RD12_RS17850 PF07411 Domain of unknown function (DUF1508) RD12_RS17855 PF01145 SPFH domain / Band 7 family RD12_RS17865 PF01042 Endoribonuclease L-PSP RD12_RS17910 PF03837 RecT family RD12_RS17945 PF00589 Phage integrase family RD12_RS17950 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS17965 PF03466 LysR substrate binding domain RD12_RS17965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS17970 PF02525 Flavodoxin-like fold RD12_RS17980 PF14849 YidC periplasmic domain RD12_RS17980 PF02096 60Kd inner membrane protein RD12_RS17985 PF01809 Putative membrane protein insertion efficiency factor RD12_RS17990 PF00825 Ribonuclease P RD12_RS17995 PF00468 Ribosomal protein L34 RD12_RS18000 PF11638 DnaA N-terminal domain RD12_RS18000 PF08299 Bacterial dnaA protein helix-turn-helix RD12_RS18000 PF00308 Bacterial dnaA protein RD12_RS18005 PF00712 DNA polymerase III beta subunit, N-terminal domain RD12_RS18005 PF02767 DNA polymerase III beta subunit, central domain RD12_RS18005 PF02768 DNA polymerase III beta subunit, C-terminal domain RD12_RS18010 PF01751 Toprim domain RD12_RS18010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS18010 PF18053 DNA gyrase B subunit insert domain RD12_RS18010 PF00986 DNA gyrase B subunit, carboxyl terminus RD12_RS18010 PF00204 DNA gyrase B RD12_RS18015 PF09339 IclR helix-turn-helix domain RD12_RS18015 PF01614 Bacterial transcriptional regulator RD12_RS18020 PF01425 Amidase RD12_RS18025 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS18035 PF01070 FMN-dependent dehydrogenase RD12_RS18055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS18055 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS18055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS18060 PF00376 MerR family regulatory protein RD12_RS18060 PF09278 MerR, DNA binding RD12_RS18075 PF02770 Acyl-CoA dehydrogenase, middle domain RD12_RS18075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD12_RS18075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD12_RS18085 PF00108 Thiolase, N-terminal domain RD12_RS18085 PF02803 Thiolase, C-terminal domain RD12_RS18090 PF01039 Carboxyl transferase domain RD12_RS18095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD12_RS18095 PF02785 Biotin carboxylase C-terminal domain RD12_RS18095 PF00364 Biotin-requiring enzyme RD12_RS18095 PF00289 Biotin carboxylase, N-terminal domain RD12_RS18105 PF00202 Aminotransferase class-III RD12_RS18110 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS18115 PF01168 Alanine racemase, N-terminal domain RD12_RS18115 PF14031 Putative serine dehydratase domain RD12_RS18120 PF16868 NMT1-like family RD12_RS18130 PF07715 TonB-dependent Receptor Plug Domain RD12_RS18130 PF00593 TonB dependent receptor RD12_RS18135 PF04361 Protein of unknown function (DUF494) RD12_RS18150 PF01751 Toprim domain RD12_RS18150 PF01131 DNA topoisomerase RD12_RS18160 PF00005 ABC transporter RD12_RS18165 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS18175 PF00171 Aldehyde dehydrogenase family RD12_RS18185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD12_RS18185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD12_RS18185 PF00205 Thiamine pyrophosphate enzyme, central domain RD12_RS18190 PF01037 Lrp/AsnC ligand binding domain RD12_RS18195 PF01062 Bestrophin, RFP-TM, chloride channel RD12_RS18205 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD12_RS18220 PF02310 B12 binding domain RD12_RS18220 PF00809 Pterin binding enzyme RD12_RS18220 PF02965 Vitamin B12 dependent methionine synthase, activation domain RD12_RS18220 PF02607 B12 binding domain RD12_RS18220 PF02574 Homocysteine S-methyltransferase RD12_RS18225 PF07715 TonB-dependent Receptor Plug Domain RD12_RS18225 PF00593 TonB dependent receptor RD12_RS18230 PF01497 Periplasmic binding protein RD12_RS18235 PF05690 Thiazole biosynthesis protein ThiG RD12_RS18240 PF08543 Phosphomethylpyrimidine kinase RD12_RS18255 PF02321 Outer membrane efflux protein RD12_RS18260 PF01467 Cytidylyltransferase-like RD12_RS18270 PF01594 AI-2E family transporter RD12_RS18280 PF07885 Ion channel RD12_RS18280 PF02254 TrkA-N domain RD12_RS18290 PF00164 Ribosomal protein S12/S23 RD12_RS18295 PF00177 Ribosomal protein S7p/S5e RD12_RS18300 PF03764 Elongation factor G, domain IV RD12_RS18300 PF14492 Elongation Factor G, domain II RD12_RS18300 PF00009 Elongation factor Tu GTP binding domain RD12_RS18300 PF00679 Elongation factor G C-terminus RD12_RS18300 PF03144 Elongation factor Tu domain 2 RD12_RS18305 PF03143 Elongation factor Tu C-terminal domain RD12_RS18305 PF03144 Elongation factor Tu domain 2 RD12_RS18305 PF00009 Elongation factor Tu GTP binding domain RD12_RS18310 PF00338 Ribosomal protein S10p/S20e RD12_RS18315 PF00297 Ribosomal protein L3 RD12_RS18320 PF00573 Ribosomal protein L4/L1 family RD12_RS18325 PF00276 Ribosomal protein L23 RD12_RS18330 PF03947 Ribosomal Proteins L2, C-terminal domain RD12_RS18330 PF00181 Ribosomal Proteins L2, RNA binding domain RD12_RS18335 PF00203 Ribosomal protein S19 RD12_RS18340 PF00237 Ribosomal protein L22p/L17e RD12_RS18345 PF07650 KH domain RD12_RS18345 PF00189 Ribosomal protein S3, C-terminal domain RD12_RS18350 PF00252 Ribosomal protein L16p/L10e RD12_RS18355 PF00831 Ribosomal L29 protein RD12_RS18360 PF00366 Ribosomal protein S17 RD12_RS18370 PF00171 Aldehyde dehydrogenase family RD12_RS18380 PF00238 Ribosomal protein L14p/L23e RD12_RS18385 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RD12_RS18390 PF00673 ribosomal L5P family C-terminus RD12_RS18390 PF00281 Ribosomal protein L5 RD12_RS18395 PF00253 Ribosomal protein S14p/S29e RD12_RS18400 PF00410 Ribosomal protein S8 RD12_RS18405 PF00347 Ribosomal protein L6 RD12_RS18410 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RD12_RS18415 PF03719 Ribosomal protein S5, C-terminal domain RD12_RS18415 PF00333 Ribosomal protein S5, N-terminal domain RD12_RS18420 PF00327 Ribosomal protein L30p/L7e RD12_RS18425 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RD12_RS18430 PF00344 SecY translocase RD12_RS18435 PF01176 Translation initiation factor 1A / IF-1 RD12_RS18440 PF00444 Ribosomal protein L36 RD12_RS18445 PF00416 Ribosomal protein S13/S18 RD12_RS18450 PF00411 Ribosomal protein S11 RD12_RS18455 PF00163 Ribosomal protein S4/S9 N-terminal domain RD12_RS18455 PF01479 S4 domain RD12_RS18460 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RD12_RS18460 PF01000 RNA polymerase Rpb3/RpoA insert domain RD12_RS18460 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RD12_RS18465 PF01196 Ribosomal protein L17 RD12_RS18475 PF03091 CutA1 divalent ion tolerance protein RD12_RS18480 PF11412 Disulphide bond corrector protein DsbC RD12_RS18480 PF02683 Cytochrome C biogenesis protein transmembrane region RD12_RS18485 PF00892 EamA-like transporter family RD12_RS18490 PF00490 Delta-aminolevulinic acid dehydratase RD12_RS18495 PF01926 50S ribosome-binding GTPase RD12_RS18500 PF00034 Cytochrome c RD12_RS18505 PF05140 ResB-like family RD12_RS18510 PF01578 Cytochrome C assembly protein RD12_RS18515 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD12_RS18515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RD12_RS18520 PF01491 Frataxin-like domain RD12_RS18525 PF00912 Transglycosylase RD12_RS18525 PF00905 Penicillin binding protein transpeptidase domain RD12_RS18525 PF17092 Penicillin-binding protein OB-like domain RD12_RS18530 PF01202 Shikimate kinase RD12_RS18535 PF01761 3-dehydroquinate synthase RD12_RS18540 PF13286 Phosphohydrolase-associated domain RD12_RS18540 PF01966 HD domain RD12_RS18545 PF00043 Glutathione S-transferase, C-terminal domain RD12_RS18545 PF13417 Glutathione S-transferase, N-terminal domain RD12_RS18550 PF17760 UvrA interaction domain RD12_RS18550 PF17755 UvrA DNA-binding domain RD12_RS18555 PF07690 Major Facilitator Superfamily RD12_RS18560 PF00436 Single-strand binding protein family RD12_RS18565 PF07715 TonB-dependent Receptor Plug Domain RD12_RS18565 PF00593 TonB dependent receptor RD12_RS18575 PF03328 HpcH/HpaI aldolase/citrate lyase family RD12_RS18585 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS18595 PF03466 LysR substrate binding domain RD12_RS18595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS18600 PF01979 Amidohydrolase family RD12_RS18605 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS18610 PF00534 Glycosyl transferases group 1 RD12_RS18610 PF13439 Glycosyltransferase Family 4 RD12_RS18620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS18620 PF03466 LysR substrate binding domain RD12_RS18630 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS18635 PF00005 ABC transporter RD12_RS18655 PF01274 Malate synthase RD12_RS18660 PF00392 Bacterial regulatory proteins, gntR family RD12_RS18660 PF07729 FCD domain RD12_RS18675 PF01040 UbiA prenyltransferase family RD12_RS18680 PF00155 Aminotransferase class I and II RD12_RS18685 PF13185 GAF domain RD12_RS18690 PF00701 Dihydrodipicolinate synthetase family RD12_RS18700 PF01476 LysM domain RD12_RS18700 PF04972 BON domain RD12_RS18705 PF05690 Thiazole biosynthesis protein ThiG RD12_RS18705 PF02597 ThiS family RD12_RS18710 PF00561 alpha/beta hydrolase fold RD12_RS18715 PF02390 Putative methyltransferase RD12_RS18730 PF00682 HMGL-like RD12_RS18735 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS18750 PF00392 Bacterial regulatory proteins, gntR family RD12_RS18750 PF07702 UTRA domain RD12_RS18755 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS18765 PF00392 Bacterial regulatory proteins, gntR family RD12_RS18765 PF07702 UTRA domain RD12_RS18770 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS18780 PF00005 ABC transporter RD12_RS18785 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS18790 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS18795 PF00550 Phosphopantetheine attachment site RD12_RS18795 PF14765 Polyketide synthase dehydratase RD12_RS18795 PF00109 Beta-ketoacyl synthase, N-terminal domain RD12_RS18795 PF16197 Ketoacyl-synthetase C-terminal extension RD12_RS18795 PF00698 Acyl transferase domain RD12_RS18795 PF08659 KR domain RD12_RS18795 PF02801 Beta-ketoacyl synthase, C-terminal domain RD12_RS18795 PF08990 Erythronolide synthase docking RD12_RS18795 PF08240 Alcohol dehydrogenase GroES-like domain RD12_RS18800 PF02515 CoA-transferase family III RD12_RS18805 PF00440 Bacterial regulatory proteins, tetR family RD12_RS18810 PF09297 NADH pyrophosphatase zinc ribbon domain RD12_RS18810 PF00293 NUDIX domain RD12_RS18815 PF00175 Oxidoreductase NAD-binding domain RD12_RS18815 PF00111 2Fe-2S iron-sulfur cluster binding domain RD12_RS18815 PF00970 Oxidoreductase FAD-binding domain RD12_RS18820 PF01425 Amidase RD12_RS18830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD12_RS18830 PF03466 LysR substrate binding domain RD12_RS18835 PF13458 Periplasmic binding protein RD12_RS18845 PF00005 ABC transporter RD12_RS18855 PF02653 Branched-chain amino acid transport system / permease component RD12_RS18865 PF00355 Rieske [2Fe-2S] domain RD12_RS18880 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RD12_RS18880 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RD12_RS18895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD12_RS18895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD12_RS18895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD12_RS18900 PF07690 Major Facilitator Superfamily RD12_RS18905 PF00132 Bacterial transferase hexapeptide (six repeats) RD12_RS18905 PF12804 MobA-like NTP transferase domain RD12_RS18905 PF14602 Hexapeptide repeat of succinyl-transferase RD12_RS18925 PF02630 SCO1/SenC RD12_RS18930 PF01040 UbiA prenyltransferase family RD12_RS18935 PF02628 Cytochrome oxidase assembly protein RD12_RS18955 PF00510 Cytochrome c oxidase subunit III RD12_RS18970 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD12_RS18975 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD12_RS18975 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RD12_RS18985 PF00999 Sodium/hydrogen exchanger family RD12_RS18990 PF00149 Calcineurin-like phosphoesterase RD12_RS18995 PF04545 Sigma-70, region 4 RD12_RS18995 PF00140 Sigma-70 factor, region 1.2 RD12_RS18995 PF04542 Sigma-70 region 2 RD12_RS19005 PF00756 Putative esterase RD12_RS19010 PF00107 Zinc-binding dehydrogenase RD12_RS19010 PF08240 Alcohol dehydrogenase GroES-like domain RD12_RS19020 PF01493 GXGXG motif RD12_RS19020 PF04898 Glutamate synthase central domain RD12_RS19020 PF01645 Conserved region in glutamate synthase RD12_RS19020 PF00310 Glutamine amidotransferases class-II RD12_RS19025 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RD12_RS19025 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD12_RS19030 PF03922 OmpW family RD12_RS19035 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS19040 PF00005 ABC transporter RD12_RS19045 PF02405 Permease MlaE RD12_RS19050 PF02470 MlaD protein RD12_RS19055 PF04333 MlaA lipoprotein RD12_RS19065 PF00005 ABC transporter RD12_RS19070 PF01061 ABC-2 type transporter RD12_RS19080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD12_RS19085 PF01634 ATP phosphoribosyltransferase RD12_RS19090 PF00815 Histidinol dehydrogenase RD12_RS19095 PF00155 Aminotransferase class I and II RD12_RS19100 PF00475 Imidazoleglycerol-phosphate dehydratase RD12_RS19105 PF00117 Glutamine amidotransferase class-I RD12_RS19110 PF00977 Histidine biosynthesis protein RD12_RS19115 PF00977 Histidine biosynthesis protein RD12_RS19120 PF01502 Phosphoribosyl-AMP cyclohydrolase RD12_RS19125 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RD12_RS19130 PF01230 HIT domain RD12_RS19135 PF02416 mttA/Hcf106 family RD12_RS19140 PF02416 mttA/Hcf106 family RD12_RS19145 PF00902 Sec-independent protein translocase protein (TatC) RD12_RS19155 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS19160 PF02917 Pertussis toxin, subunit 1 RD12_RS19165 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD12_RS19165 PF03440 Aerolysin/Pertussis toxin (APT) domain RD12_RS19170 PF09275 Pertussis toxin S4 subunit RD12_RS19175 PF09276 Pertussis toxin S5 subunit RD12_RS19180 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD12_RS19180 PF03440 Aerolysin/Pertussis toxin (APT) domain RD12_RS19185 PF04956 TrbC/VIRB2 family RD12_RS19190 PF05101 Type IV secretory pathway, VirB3-like protein RD12_RS19195 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RD12_RS19200 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RD12_RS19210 PF04335 VirB8 protein RD12_RS19215 PF03524 Conjugal transfer protein RD12_RS19220 PF03743 Bacterial conjugation TrbI-like protein RD12_RS19225 PF00437 Type II/IV secretion system protein RD12_RS19235 PF00892 EamA-like transporter family RD12_RS19255 PF10396 GTP-binding protein TrmE N-terminus RD12_RS19255 PF12631 MnmE helical domain RD12_RS19255 PF01926 50S ribosome-binding GTPase RD12_RS19260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS19265 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS19270 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS19270 PF12911 N-terminal TM domain of oligopeptide transport permease C RD12_RS19275 PF00005 ABC transporter RD12_RS19275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS19285 PF01960 ArgJ family RD12_RS19295 PF00293 NUDIX domain RD12_RS19315 PF02321 Outer membrane efflux protein RD12_RS19320 PF00873 AcrB/AcrD/AcrF family RD12_RS19325 PF00873 AcrB/AcrD/AcrF family RD12_RS19330 PF13533 Biotin-lipoyl like RD12_RS19335 PF07072 Cell division protein RD12_RS19340 PF01121 Dephospho-CoA kinase RD12_RS19345 PF06750 Bacterial Peptidase A24 N-terminal domain RD12_RS19345 PF01478 Type IV leader peptidase family RD12_RS19360 PF02569 Pantoate-beta-alanine ligase RD12_RS19365 PF02616 Segregation and condensation protein ScpA RD12_RS19375 PF07690 Major Facilitator Superfamily RD12_RS19380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RD12_RS19380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RD12_RS19390 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS19395 PF00005 ABC transporter RD12_RS19400 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS19405 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS19410 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD12_RS19415 PF00005 ABC transporter RD12_RS19420 PF18075 FtsX extracellular domain RD12_RS19425 PF03975 CheD chemotactic sensory transduction RD12_RS19435 PF00730 HhH-GPD superfamily base excision DNA repair protein RD12_RS19435 PF00633 Helix-hairpin-helix motif RD12_RS19435 PF10576 Iron-sulfur binding domain of endonuclease III RD12_RS19435 PF14815 NUDIX domain RD12_RS19445 PF08241 Methyltransferase domain RD12_RS19455 PF02515 CoA-transferase family III RD12_RS19460 PF02515 CoA-transferase family III RD12_RS19470 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS19475 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS19480 PF00881 Nitroreductase family RD12_RS19490 PF00682 HMGL-like RD12_RS19495 PF00378 Enoyl-CoA hydratase/isomerase RD12_RS19500 PF02515 CoA-transferase family III RD12_RS19505 PF03401 Tripartite tricarboxylate transporter family receptor RD12_RS19515 PF06628 Catalase-related immune-responsive RD12_RS19515 PF00199 Catalase RD12_RS19520 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS19525 PF00005 ABC transporter RD12_RS19535 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD12_RS19540 PF01546 Peptidase family M20/M25/M40 RD12_RS19540 PF07687 Peptidase dimerisation domain RD12_RS19545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS19545 PF00005 ABC transporter RD12_RS19550 PF00005 ABC transporter RD12_RS19550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD12_RS19555 PF12911 N-terminal TM domain of oligopeptide transport permease C RD12_RS19555 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS19560 PF00528 Binding-protein-dependent transport system inner membrane component RD12_RS19565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD12_RS19570 PF12631 MnmE helical domain RD12_RS19570 PF10396 GTP-binding protein TrmE N-terminus RD12_RS19570 PF01926 50S ribosome-binding GTPase RD12_RS19580 PF00072 Response regulator receiver domain RD12_RS19580 PF00486 Transcriptional regulatory protein, C terminal RD12_RS19585 PF00512 His Kinase A (phospho-acceptor) domain RD12_RS19585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD12_RS19600 PF01970 Tripartite tricarboxylate transporter TctA family RD12_RS19605 PF00155 Aminotransferase class I and II RD12_RS19610 PF00313 'Cold-shock' DNA-binding domain