RD13_RS00005	SM01228	RD13_RS00005
RD13_RS00025	SM00470	ParB-like nuclease domain
RD13_RS00030	SM00870	RD13_RS00030
RD13_RS00070	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
RD13_RS00070	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
RD13_RS00075	SM00649	Ribosomal protein L11/L12
RD13_RS00100	SM00663	RNA polymerase I subunit A N-terminus
RD13_RS00130	SM00448	cheY-homologous receiver domain
RD13_RS00130	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS00200	SM00563	Phosphate acyltransferases
RD13_RS00240	SM00421	helix_turn_helix, Lux Regulon
RD13_RS00285	SM00382	ATPases associated with a variety of cellular activities
RD13_RS00300	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS00390	SM00387	Histidine kinase-like ATPases
RD13_RS00400	SM00644	RD13_RS00400
RD13_RS00415	SM00382	ATPases associated with a variety of cellular activities
RD13_RS00415	SM00962	SRP54-type protein, GTPase domain
RD13_RS00415	SM00963	SRP54-type protein, helical bundle domain
RD13_RS00515	SM00382	ATPases associated with a variety of cellular activities
RD13_RS00540	SM00936	Penicillin-binding protein 5, C-terminal domain 
RD13_RS00560	SM00729	Elongator protein 3, MiaB family, Radical SAM
RD13_RS00605	SM00836	DALR anticodon binding domain
RD13_RS00605	SM01016	Arginyl tRNA synthetase N terminal dom
RD13_RS00640	SM00382	ATPases associated with a variety of cellular activities
RD13_RS00655	SM00382	ATPases associated with a variety of cellular activities
RD13_RS00690	SM00917	LeuA allosteric (dimerisation) domain
RD13_RS00745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS00745	SM00895	RD13_RS00745
RD13_RS00780	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS00790	SM00797	Allophanate hydrolase subunit 2
RD13_RS00795	SM00796	Allophanate hydrolase subunit 1
RD13_RS00820	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RD13_RS00820	SM00387	Histidine kinase-like ATPases
RD13_RS00820	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS00825	SM00448	cheY-homologous receiver domain
RD13_RS00825	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS00830	SM00091	PAS domain
RD13_RS00830	SM00387	Histidine kinase-like ATPases
RD13_RS00830	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS00835	SM00448	cheY-homologous receiver domain
RD13_RS00835	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS00845	SM00978	RD13_RS00845
RD13_RS00870	SM00382	ATPases associated with a variety of cellular activities
RD13_RS00885	SM00487	DEAD-like helicases superfamily
RD13_RS00885	SM00490	helicase superfamily c-terminal domain
RD13_RS00930	SM00450	Rhodanese Homology Domain
RD13_RS01025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS01025	SM00895	RD13_RS01025
RD13_RS01075	SM00882	Coenzyme A transferase
RD13_RS01080	SM00882	Coenzyme A transferase
RD13_RS01085	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS01105	SM00869	Autotransporter beta-domain
RD13_RS01135	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS01135	SM00895	RD13_RS01135
RD13_RS01200	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS01200	SM00895	RD13_RS01200
RD13_RS01240	SM00382	ATPases associated with a variety of cellular activities
RD13_RS01255	SM00853	MutL C terminal dimerisation domain
RD13_RS01255	SM01340	RD13_RS01255
RD13_RS01265	SM00646	RD13_RS01265
RD13_RS01345	SM00382	ATPases associated with a variety of cellular activities
RD13_RS01350	SM00382	ATPases associated with a variety of cellular activities
RD13_RS01430	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RD13_RS01460	SM00342	helix_turn_helix, arabinose operon control protein
RD13_RS01470	SM00342	helix_turn_helix, arabinose operon control protein
RD13_RS01520	SM00347	helix_turn_helix multiple antibiotic resistance protein
RD13_RS01545	SM00382	ATPases associated with a variety of cellular activities
RD13_RS01550	SM00382	ATPases associated with a variety of cellular activities
RD13_RS01620	SM00732	Likely ribonuclease with RNase H fold.
RD13_RS01635	SM00563	Phosphate acyltransferases
RD13_RS01685	SM00849	Metallo-beta-lactamase superfamily
RD13_RS01710	SM00267	diguanylate cyclase
RD13_RS01735	SM00382	ATPases associated with a variety of cellular activities
RD13_RS01755	SM00965	Secretin and TonB N terminus short domain
RD13_RS01800	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS01800	SM00895	RD13_RS01800
RD13_RS01815	SM01236	RD13_RS01815
RD13_RS01835	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS01860	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
RD13_RS01875	SM00845	GatB domain
RD13_RS01950	SM00749	bacterial OsmY and nodulation domain
RD13_RS02015	SM00450	Rhodanese Homology Domain
RD13_RS02020	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS02060	SM00450	Rhodanese Homology Domain
RD13_RS02155	SM00479	RD13_RS02155
RD13_RS02185	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS02190	SM00838	Elongation factor G C-terminus
RD13_RS02190	SM00889	Elongation factor G, domain IV
RD13_RS02260	SM00357	Cold shock protein domain
RD13_RS02270	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS02270	SM00895	RD13_RS02270
RD13_RS02285	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RD13_RS02355	SM00363	S4 RNA-binding domain
RD13_RS02360	SM00316	Ribosomal protein S1-like RNA-binding domain
RD13_RS02400	SM00954	Region found in RelA / SpoT proteins
RD13_RS02445	SM00478	endonuclease III
RD13_RS02445	SM00525	RD13_RS02445
RD13_RS02450	SM00382	ATPases associated with a variety of cellular activities
RD13_RS02455	SM00382	ATPases associated with a variety of cellular activities
RD13_RS02485	SM00382	ATPases associated with a variety of cellular activities
RD13_RS02510	SM00382	ATPases associated with a variety of cellular activities
RD13_RS02535	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RD13_RS02535	SM00292	breast cancer carboxy-terminal domain
RD13_RS02535	SM00532	Ligase N family
RD13_RS02540	SM00771	ZipA, C-terminal domain (FtsZ-binding)
RD13_RS02545	SM00968	SMC proteins Flexible Hinge Domain
RD13_RS02555	SM00986	Uracil DNA glycosylase superfamily
RD13_RS02555	SM00987	UreE urease accessory protein, C-terminal domain 
RD13_RS02565	SM00448	cheY-homologous receiver domain
RD13_RS02565	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS02575	SM00387	Histidine kinase-like ATPases
RD13_RS02575	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS02590	SM00342	helix_turn_helix, arabinose operon control protein
RD13_RS02605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS02605	SM00895	RD13_RS02605
RD13_RS02610	SM01130	RD13_RS02610
RD13_RS02665	SM00387	Histidine kinase-like ATPases
RD13_RS02665	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS02670	SM00448	cheY-homologous receiver domain
RD13_RS02670	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS02695	SM00411	bacterial (prokaryotic) histone like domain
RD13_RS02700	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
RD13_RS02710	SM00967	RNA 2'-O ribose methyltransferase substrate binding
RD13_RS02715	SM00316	Ribosomal protein S1-like RNA-binding domain
RD13_RS02715	SM00357	Cold shock protein domain
RD13_RS02715	SM00955	RD13_RS02715
RD13_RS02725	SM01144	RD13_RS02725
RD13_RS02760	SM00155	Phospholipase D. Active site motifs.
RD13_RS02805	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RD13_RS02810	SM00267	diguanylate cyclase
RD13_RS02865	SM00883	Chaperonin 10 Kd subunit
RD13_RS02875	SM00869	Autotransporter beta-domain
RD13_RS02895	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
RD13_RS02935	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS02975	SM00880	RD13_RS02975
RD13_RS02980	SM00382	ATPases associated with a variety of cellular activities
RD13_RS02980	SM00962	SRP54-type protein, GTPase domain
RD13_RS02980	SM00963	SRP54-type protein, helical bundle domain
RD13_RS03015	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RD13_RS03045	SM00382	ATPases associated with a variety of cellular activities
RD13_RS03065	SM00919	Malic enzyme, NAD binding domain
RD13_RS03065	SM01274	RD13_RS03065
RD13_RS03085	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS03085	SM00895	RD13_RS03085
RD13_RS03165	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS03170	SM00852	Probable molybdopterin binding domain
RD13_RS03190	SM00487	DEAD-like helicases superfamily
RD13_RS03190	SM00490	helicase superfamily c-terminal domain
RD13_RS03265	SM01011	Aminopeptidase P, N-terminal domain
RD13_RS03290	SM00798	AICARFT/IMPCHase bienzyme
RD13_RS03290	SM00851	MGS-like domain
RD13_RS03300	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RD13_RS03315	SM00382	ATPases associated with a variety of cellular activities
RD13_RS03320	SM00341	Helicase and RNase D C-terminal
RD13_RS03320	SM00487	DEAD-like helicases superfamily
RD13_RS03320	SM00490	helicase superfamily c-terminal domain
RD13_RS03320	SM00956	RD13_RS03320
RD13_RS03335	SM00947	Carbonic anhydrase
RD13_RS03360	SM00382	ATPases associated with a variety of cellular activities
RD13_RS03365	SM00382	ATPases associated with a variety of cellular activities
RD13_RS03595	SM00448	cheY-homologous receiver domain
RD13_RS03595	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS03650	SM00382	ATPases associated with a variety of cellular activities
RD13_RS03695	SM00650	Ribosomal RNA adenine dimethylases
RD13_RS03760	SM00382	ATPases associated with a variety of cellular activities
RD13_RS03780	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS03815	SM00867	YceI-like domain 
RD13_RS03820	SM00965	Secretin and TonB N terminus short domain
RD13_RS03855	SM00530	Helix-turn-helix XRE-family like proteins 
RD13_RS03860	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS03865	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
RD13_RS03945	SM00382	ATPases associated with a variety of cellular activities
RD13_RS03965	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS03980	SM00382	ATPases associated with a variety of cellular activities
RD13_RS04010	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS04010	SM00895	RD13_RS04010
RD13_RS04015	SM00869	Autotransporter beta-domain
RD13_RS04020	SM00895	RD13_RS04020
RD13_RS04025	SM00829	Enoylreductase
RD13_RS04045	SM00382	ATPases associated with a variety of cellular activities
RD13_RS04105	SM00487	DEAD-like helicases superfamily
RD13_RS04105	SM00490	helicase superfamily c-terminal domain
RD13_RS04105	SM00982	RD13_RS04105
RD13_RS04105	SM01058	CarD-like/TRCF domain
RD13_RS04190	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
RD13_RS04195	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
RD13_RS04250	SM00014	Acid phosphatase homologues
RD13_RS04310	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS04335	SM00450	Rhodanese Homology Domain
RD13_RS04400	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS04425	SM00829	Enoylreductase
RD13_RS04455	SM00316	Ribosomal protein S1-like RNA-binding domain
RD13_RS04455	SM00322	K homology RNA-binding domain
RD13_RS04460	SM01387	RD13_RS04460
RD13_RS04500	SM00382	ATPases associated with a variety of cellular activities
RD13_RS04575	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS04575	SM00866	RD13_RS04575
RD13_RS04580	SM00878	Biotin carboxylase C-terminal domain
RD13_RS04630	SM00382	ATPases associated with a variety of cellular activities
RD13_RS04735	SM00434	DNA Topoisomerase IV
RD13_RS04745	SM00830	Chorismate mutase type II
RD13_RS04765	SM00316	Ribosomal protein S1-like RNA-binding domain
RD13_RS04770	SM00411	bacterial (prokaryotic) histone like domain
RD13_RS04820	SM00893	Electron transfer flavoprotein domain
RD13_RS04825	SM00893	Electron transfer flavoprotein domain
RD13_RS04860	SM00382	ATPases associated with a variety of cellular activities
RD13_RS04880	SM00729	Elongator protein 3, MiaB family, Radical SAM
RD13_RS04930	SM00363	S4 RNA-binding domain
RD13_RS04975	SM00421	helix_turn_helix, Lux Regulon
RD13_RS04975	SM00448	cheY-homologous receiver domain
RD13_RS04980	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RD13_RS04980	SM00091	PAS domain
RD13_RS04980	SM00387	Histidine kinase-like ATPases
RD13_RS04980	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS05015	SM00861	Transketolase, pyrimidine binding domain
RD13_RS05020	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
RD13_RS05070	SM00271	DnaJ molecular chaperone homology domain
RD13_RS05090	SM00852	Probable molybdopterin binding domain
RD13_RS05110	SM00316	Ribosomal protein S1-like RNA-binding domain
RD13_RS05145	SM00448	cheY-homologous receiver domain
RD13_RS05150	SM00073	Histidine Phosphotransfer domain
RD13_RS05150	SM00260	Two component signalling adaptor domain
RD13_RS05150	SM00387	Histidine kinase-like ATPases
RD13_RS05150	SM01231	RD13_RS05150
RD13_RS05155	SM00260	Two component signalling adaptor domain
RD13_RS05160	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RD13_RS05160	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RD13_RS05170	SM00448	cheY-homologous receiver domain
RD13_RS05175	SM00448	cheY-homologous receiver domain
RD13_RS05215	SM01091	Transporter associated domain
RD13_RS05230	SM00729	Elongator protein 3, MiaB family, Radical SAM
RD13_RS05255	SM01323	RD13_RS05255
RD13_RS05285	SM00869	Autotransporter beta-domain
RD13_RS05335	SM00919	Malic enzyme, NAD binding domain
RD13_RS05335	SM01274	RD13_RS05335
RD13_RS05360	SM00382	ATPases associated with a variety of cellular activities
RD13_RS05405	SM00382	ATPases associated with a variety of cellular activities
RD13_RS05415	SM01103	RD13_RS05415
RD13_RS05450	SM00116	Domain in cystathionine beta-synthase and other proteins.
RD13_RS05470	SM00448	cheY-homologous receiver domain
RD13_RS05470	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS05475	SM00052	Putative diguanylate phosphodiesterase
RD13_RS05475	SM00267	diguanylate cyclase
RD13_RS05475	SM00387	Histidine kinase-like ATPases
RD13_RS05475	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS05485	SM00382	ATPases associated with a variety of cellular activities
RD13_RS05505	SM00382	ATPases associated with a variety of cellular activities
RD13_RS05530	SM00822	RD13_RS05530
RD13_RS05535	SM00937	RD13_RS05535
RD13_RS05555	SM00382	ATPases associated with a variety of cellular activities
RD13_RS05565	SM00869	Autotransporter beta-domain
RD13_RS05595	SM00481	DNA polymerase alpha chain like domain
RD13_RS05615	SM00919	Malic enzyme, NAD binding domain
RD13_RS05615	SM01274	RD13_RS05615
RD13_RS05625	SM00344	helix_turn_helix ASNC type
RD13_RS05640	SM00861	Transketolase, pyrimidine binding domain
RD13_RS05700	SM00316	Ribosomal protein S1-like RNA-binding domain
RD13_RS05700	SM00732	Likely ribonuclease with RNase H fold.
RD13_RS05705	SM00491	RD13_RS05705
RD13_RS05715	SM00363	S4 RNA-binding domain
RD13_RS05730	SM00822	RD13_RS05730
RD13_RS05785	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
RD13_RS05795	SM00822	RD13_RS05795
RD13_RS05820	SM01007	Class II Aldolase and Adducin N-terminal domain
RD13_RS05895	SM01211	RD13_RS05895
RD13_RS05900	SM00912	haemagglutination activity domain
RD13_RS05915	SM00347	helix_turn_helix multiple antibiotic resistance protein
RD13_RS05920	SM00530	Helix-turn-helix XRE-family like proteins 
RD13_RS05925	SM01007	Class II Aldolase and Adducin N-terminal domain
RD13_RS05965	SM01130	RD13_RS05965
RD13_RS06010	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS06020	SM00420	helix_turn_helix, Deoxyribose operon repressor
RD13_RS06020	SM01134	RD13_RS06020
RD13_RS06025	SM00382	ATPases associated with a variety of cellular activities
RD13_RS06030	SM00382	ATPases associated with a variety of cellular activities
RD13_RS06065	SM00344	helix_turn_helix ASNC type
RD13_RS06100	SM00421	helix_turn_helix, Lux Regulon
RD13_RS06110	SM00869	Autotransporter beta-domain
RD13_RS06120	SM00116	Domain in cystathionine beta-synthase and other proteins.
RD13_RS06120	SM01240	RD13_RS06120
RD13_RS06130	SM00530	Helix-turn-helix XRE-family like proteins 
RD13_RS06155	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS06170	SM00382	ATPases associated with a variety of cellular activities
RD13_RS06210	SM00849	Metallo-beta-lactamase superfamily
RD13_RS06210	SM01027	Beta-Casp domain
RD13_RS06230	SM00342	helix_turn_helix, arabinose operon control protein
RD13_RS06250	SM00829	Enoylreductase
RD13_RS06260	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS06300	SM00382	ATPases associated with a variety of cellular activities
RD13_RS06305	SM00354	helix_turn _helix lactose operon repressor
RD13_RS06355	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS06390	SM00873	B3/4 domain
RD13_RS06390	SM00874	tRNA synthetase B5 domain
RD13_RS06390	SM00896	Ferredoxin-fold anticodon binding domain
RD13_RS06395	SM00411	bacterial (prokaryotic) histone like domain
RD13_RS06400	SM00422	helix_turn_helix, mercury resistance
RD13_RS06505	SM00822	RD13_RS06505
RD13_RS06520	SM00382	ATPases associated with a variety of cellular activities
RD13_RS06535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RD13_RS06535	SM00387	Histidine kinase-like ATPases
RD13_RS06535	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS06540	SM00448	cheY-homologous receiver domain
RD13_RS06540	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS06545	SM00382	ATPases associated with a variety of cellular activities
RD13_RS06575	SM00881	CoA binding domain
RD13_RS06645	SM00858	RD13_RS06645
RD13_RS06655	SM00240	Forkhead associated domain
RD13_RS06655	SM00382	ATPases associated with a variety of cellular activities
RD13_RS06805	SM00271	DnaJ molecular chaperone homology domain
RD13_RS06830	SM00382	ATPases associated with a variety of cellular activities
RD13_RS06855	SM01329	RD13_RS06855
RD13_RS06875	SM00448	cheY-homologous receiver domain
RD13_RS06875	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS06880	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS06925	SM00463	Small MutS-related domain
RD13_RS06935	SM00843	RD13_RS06935
RD13_RS06945	SM00382	ATPases associated with a variety of cellular activities
RD13_RS06975	SM00267	diguanylate cyclase
RD13_RS07000	SM00342	helix_turn_helix, arabinose operon control protein
RD13_RS07020	SM01006	Siderophore biosynthesis protein domain
RD13_RS07070	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RD13_RS07070	SM00267	diguanylate cyclase
RD13_RS07090	SM00421	helix_turn_helix, Lux Regulon
RD13_RS07090	SM00448	cheY-homologous receiver domain
RD13_RS07095	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RD13_RS07140	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS07155	SM00382	ATPases associated with a variety of cellular activities
RD13_RS07175	SM00834	Putative regulatory protein
RD13_RS07190	SM00421	helix_turn_helix, Lux Regulon
RD13_RS07220	SM00530	Helix-turn-helix XRE-family like proteins 
RD13_RS07230	SM01001	AIR carboxylase
RD13_RS07245	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS07250	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS07260	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS07260	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
RD13_RS07270	SM00382	ATPases associated with a variety of cellular activities
RD13_RS07355	SM00382	ATPases associated with a variety of cellular activities
RD13_RS07365	SM00493	RD13_RS07365
RD13_RS07435	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
RD13_RS07435	SM00534	ATPase domain of DNA mismatch repair MUTS family
RD13_RS07440	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
RD13_RS07455	SM01130	RD13_RS07455
RD13_RS07470	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS07470	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
RD13_RS07480	SM00382	ATPases associated with a variety of cellular activities
RD13_RS07485	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RD13_RS07485	SM00954	Region found in RelA / SpoT proteins
RD13_RS07490	SM01409	RD13_RS07490
RD13_RS07495	SM00072	Guanylate kinase homologues.
RD13_RS07510	SM00822	RD13_RS07510
RD13_RS07525	SM00530	Helix-turn-helix XRE-family like proteins 
RD13_RS07560	SM00052	Putative diguanylate phosphodiesterase
RD13_RS07560	SM00267	diguanylate cyclase
RD13_RS07575	SM00729	Elongator protein 3, MiaB family, Radical SAM
RD13_RS07580	SM01230	RD13_RS07580
RD13_RS07585	SM00091	PAS domain
RD13_RS07585	SM00387	Histidine kinase-like ATPases
RD13_RS07585	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS07590	SM00382	ATPases associated with a variety of cellular activities
RD13_RS07590	SM00448	cheY-homologous receiver domain
RD13_RS07615	SM00382	ATPases associated with a variety of cellular activities
RD13_RS07660	SM00487	DEAD-like helicases superfamily
RD13_RS07660	SM00490	helicase superfamily c-terminal domain
RD13_RS07705	SM00382	ATPases associated with a variety of cellular activities
RD13_RS07730	SM00984	UDP binding domain
RD13_RS07780	SM00382	ATPases associated with a variety of cellular activities
RD13_RS07785	SM00382	ATPases associated with a variety of cellular activities
RD13_RS07835	SM00327	von Willebrand factor (vWF) type A domain
RD13_RS07840	SM00028	Tetratricopeptide repeats
RD13_RS07840	SM00327	von Willebrand factor (vWF) type A domain
RD13_RS07880	SM00421	helix_turn_helix, Lux Regulon
RD13_RS07880	SM00448	cheY-homologous receiver domain
RD13_RS07885	SM00869	Autotransporter beta-domain
RD13_RS07890	SM00530	Helix-turn-helix XRE-family like proteins 
RD13_RS07995	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RD13_RS08010	SM00822	RD13_RS08010
RD13_RS08110	SM00382	ATPases associated with a variety of cellular activities
RD13_RS08115	SM00382	ATPases associated with a variety of cellular activities
RD13_RS08195	SM00248	ankyrin repeats
RD13_RS08200	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS08205	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS08205	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
RD13_RS08215	SM00382	ATPases associated with a variety of cellular activities
RD13_RS08225	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
RD13_RS08265	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS08265	SM00895	RD13_RS08265
RD13_RS08305	SM00052	Putative diguanylate phosphodiesterase
RD13_RS08310	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS08310	SM00073	Histidine Phosphotransfer domain
RD13_RS08310	SM00091	PAS domain
RD13_RS08310	SM00387	Histidine kinase-like ATPases
RD13_RS08310	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS08310	SM00448	cheY-homologous receiver domain
RD13_RS08315	SM00421	helix_turn_helix, Lux Regulon
RD13_RS08315	SM00448	cheY-homologous receiver domain
RD13_RS08320	SM00912	haemagglutination activity domain
RD13_RS08415	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS08435	SM01091	Transporter associated domain
RD13_RS08455	SM00028	Tetratricopeptide repeats
RD13_RS08460	SM00840	RD13_RS08460
RD13_RS08465	SM00478	endonuclease III
RD13_RS08580	SM00382	ATPases associated with a variety of cellular activities
RD13_RS08595	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS08600	SM00881	CoA binding domain
RD13_RS08630	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RD13_RS08655	SM00028	Tetratricopeptide repeats
RD13_RS08670	SM00347	helix_turn_helix multiple antibiotic resistance protein
RD13_RS08680	SM00421	helix_turn_helix, Lux Regulon
RD13_RS08725	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS08745	SM00318	Staphylococcal nuclease homologues
RD13_RS08765	SM00382	ATPases associated with a variety of cellular activities
RD13_RS08770	SM00347	helix_turn_helix multiple antibiotic resistance protein
RD13_RS08815	SM00858	RD13_RS08815
RD13_RS08845	SM00028	Tetratricopeptide repeats
RD13_RS08860	SM00382	ATPases associated with a variety of cellular activities
RD13_RS08890	SM00841	Elongation factor P, C-terminal
RD13_RS08890	SM01185	RD13_RS08890
RD13_RS08950	SM00479	RD13_RS08950
RD13_RS09090	SM00347	helix_turn_helix multiple antibiotic resistance protein
RD13_RS09095	SM00411	bacterial (prokaryotic) histone like domain
RD13_RS09150	SM00382	ATPases associated with a variety of cellular activities
RD13_RS09170	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS09170	SM00895	RD13_RS09170
RD13_RS09210	SM00382	ATPases associated with a variety of cellular activities
RD13_RS09230	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS09265	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RD13_RS09265	SM00465	GIY-YIG type nucleases (URI domain)
RD13_RS09435	SM00822	RD13_RS09435
RD13_RS09525	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RD13_RS09535	SM00342	helix_turn_helix, arabinose operon control protein
RD13_RS09545	SM00464	Found in ATP-dependent protease La (LON)
RD13_RS09580	SM00382	ATPases associated with a variety of cellular activities
RD13_RS09600	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS09600	SM00895	RD13_RS09600
RD13_RS09615	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RD13_RS09635	SM00342	helix_turn_helix, arabinose operon control protein
RD13_RS09675	SM00382	ATPases associated with a variety of cellular activities
RD13_RS09780	SM00382	ATPases associated with a variety of cellular activities
RD13_RS09825	SM00400	zinc finger
RD13_RS09825	SM00493	RD13_RS09825
RD13_RS09825	SM00766	DNA primase DnaG DnaB-binding
RD13_RS09840	SM00788	Adenylosuccinate synthetase
RD13_RS09850	SM00244	prohibitin homologues
RD13_RS09855	SM00244	prohibitin homologues
RD13_RS09875	SM00382	ATPases associated with a variety of cellular activities
RD13_RS09880	SM00564	beta-propeller repeat
RD13_RS09910	SM00562	RD13_RS09910
RD13_RS09925	SM00448	cheY-homologous receiver domain
RD13_RS09930	SM00387	Histidine kinase-like ATPases
RD13_RS09930	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS09980	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RD13_RS10030	SM00382	ATPases associated with a variety of cellular activities
RD13_RS10090	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS10090	SM00866	RD13_RS10090
RD13_RS10145	SM00271	DnaJ molecular chaperone homology domain
RD13_RS10170	SM00226	Low molecular weight phosphatase family
RD13_RS10175	SM00487	DEAD-like helicases superfamily
RD13_RS10175	SM00490	helicase superfamily c-terminal domain
RD13_RS10190	SM00869	Autotransporter beta-domain
RD13_RS10215	SM00882	Coenzyme A transferase
RD13_RS10220	SM00882	Coenzyme A transferase
RD13_RS10275	SM00382	ATPases associated with a variety of cellular activities
RD13_RS10275	SM00464	Found in ATP-dependent protease La (LON)
RD13_RS10280	SM00382	ATPases associated with a variety of cellular activities
RD13_RS10280	SM00994	ClpX C4-type zinc finger
RD13_RS10280	SM01086	C-terminal, D2-small domain, of ClpB protein
RD13_RS10300	SM00357	Cold shock protein domain
RD13_RS10310	SM00357	Cold shock protein domain
RD13_RS10325	SM00869	Autotransporter beta-domain
RD13_RS10360	SM00382	ATPases associated with a variety of cellular activities
RD13_RS10365	SM00965	Secretin and TonB N terminus short domain
RD13_RS10395	SM00904	Riboflavin kinase
RD13_RS10420	SM00344	helix_turn_helix ASNC type
RD13_RS10480	SM00749	bacterial OsmY and nodulation domain
RD13_RS10530	SM00422	helix_turn_helix, mercury resistance
RD13_RS10555	SM00257	Lysin motif
RD13_RS10570	SM01207	RD13_RS10570
RD13_RS10615	SM00347	helix_turn_helix multiple antibiotic resistance protein
RD13_RS10655	SM00869	Autotransporter beta-domain
RD13_RS10665	SM00155	Phospholipase D. Active site motifs.
RD13_RS10680	SM01005	Alanine racemase, C-terminal domain
RD13_RS10690	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RD13_RS10690	SM00331	Sigma factor PP2C-like phosphatases
RD13_RS10690	SM01049	RD13_RS10690
RD13_RS10765	SM00382	ATPases associated with a variety of cellular activities
RD13_RS10880	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RD13_RS10880	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RD13_RS10925	SM00382	ATPases associated with a variety of cellular activities
RD13_RS10940	SM00450	Rhodanese Homology Domain
RD13_RS10955	SM00829	Enoylreductase
RD13_RS10970	SM00347	helix_turn_helix multiple antibiotic resistance protein
RD13_RS10990	SM01329	RD13_RS10990
RD13_RS10995	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS11015	SM00382	ATPases associated with a variety of cellular activities
RD13_RS11080	SM01209	RD13_RS11080
RD13_RS11080	SM01210	RD13_RS11080
RD13_RS11110	SM00869	Autotransporter beta-domain
RD13_RS11150	SM00316	Ribosomal protein S1-like RNA-binding domain
RD13_RS11170	SM00382	ATPases associated with a variety of cellular activities
RD13_RS11225	SM00481	DNA polymerase alpha chain like domain
RD13_RS11235	SM00382	ATPases associated with a variety of cellular activities
RD13_RS11235	SM00487	DEAD-like helicases superfamily
RD13_RS11235	SM00490	helicase superfamily c-terminal domain
RD13_RS11235	SM00847	Helicase associated domain (HA2)  Add an annotation
RD13_RS11300	SM00382	ATPases associated with a variety of cellular activities
RD13_RS11385	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS11385	SM00866	RD13_RS11385
RD13_RS11425	SM00981	RD13_RS11425
RD13_RS11480	SM00028	Tetratricopeptide repeats
RD13_RS11480	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS11490	SM01192	RD13_RS11490
RD13_RS11490	SM01193	RD13_RS11490
RD13_RS11545	SM00382	ATPases associated with a variety of cellular activities
RD13_RS11560	SM00882	Coenzyme A transferase
RD13_RS11720	SM00358	Double-stranded RNA binding motif
RD13_RS11720	SM00535	Ribonuclease III family
RD13_RS11730	SM00838	Elongation factor G C-terminus
RD13_RS11735	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RD13_RS11760	SM00825	Beta-ketoacyl synthase
RD13_RS11770	SM00822	RD13_RS11770
RD13_RS11775	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
RD13_RS11810	SM00644	RD13_RS11810
RD13_RS11870	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RD13_RS11875	SM01329	RD13_RS11875
RD13_RS11895	SM00382	ATPases associated with a variety of cellular activities
RD13_RS11930	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RD13_RS11970	SM00852	Probable molybdopterin binding domain
RD13_RS11990	SM00052	Putative diguanylate phosphodiesterase
RD13_RS12010	SM00382	ATPases associated with a variety of cellular activities
RD13_RS12020	SM00855	Phosphoglycerate mutase family
RD13_RS12030	SM00851	MGS-like domain
RD13_RS12030	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
RD13_RS12035	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
RD13_RS12100	SM00267	diguanylate cyclase
RD13_RS12105	SM00244	prohibitin homologues
RD13_RS12165	SM00935	Outer membrane protein (OmpH-like)
RD13_RS12175	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RD13_RS12220	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RD13_RS12315	SM00382	ATPases associated with a variety of cellular activities
RD13_RS12380	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RD13_RS12380	SM00091	PAS domain
RD13_RS12380	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RD13_RS12380	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RD13_RS12385	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RD13_RS12385	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RD13_RS12390	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RD13_RS12390	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RD13_RS12405	SM00047	Lysozyme subfamily 2
RD13_RS12450	SM00858	RD13_RS12450
RD13_RS12465	SM00382	ATPases associated with a variety of cellular activities
RD13_RS12465	SM00962	SRP54-type protein, GTPase domain
RD13_RS12485	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS12495	SM00382	ATPases associated with a variety of cellular activities
RD13_RS12510	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
RD13_RS12530	SM00354	helix_turn _helix lactose operon repressor
RD13_RS12555	SM00881	CoA binding domain
RD13_RS12560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS12560	SM00895	RD13_RS12560
RD13_RS12585	SM00869	Autotransporter beta-domain
RD13_RS12605	SM00155	Phospholipase D. Active site motifs.
RD13_RS12650	SM00642	Alpha-amylase domain
RD13_RS12655	SM00642	Alpha-amylase domain
RD13_RS12660	SM00642	Alpha-amylase domain
RD13_RS12665	SM00642	Alpha-amylase domain
RD13_RS12670	SM00642	Alpha-amylase domain
RD13_RS12685	SM00642	Alpha-amylase domain
RD13_RS12705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS12840	SM00953	RD13_RS12840
RD13_RS12875	SM00382	ATPases associated with a variety of cellular activities
RD13_RS12925	SM00382	ATPases associated with a variety of cellular activities
RD13_RS12930	SM00382	ATPases associated with a variety of cellular activities
RD13_RS12965	SM00434	DNA Topoisomerase IV
RD13_RS12975	SM00387	Histidine kinase-like ATPases
RD13_RS12975	SM00433	TopoisomeraseII
RD13_RS12985	SM00357	Cold shock protein domain
RD13_RS12985	SM00382	ATPases associated with a variety of cellular activities
RD13_RS12985	SM00959	Rho termination factor, N-terminal domain
RD13_RS13025	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
RD13_RS13025	SM00474	3'-5' exonuclease
RD13_RS13025	SM00475	5'-3' exonuclease
RD13_RS13025	SM00482	DNA polymerase A domain
RD13_RS13065	SM00316	Ribosomal protein S1-like RNA-binding domain
RD13_RS13075	SM00363	S4 RNA-binding domain
RD13_RS13100	SM00833	Cobalamin synthesis protein cobW C-terminal domain
RD13_RS13175	SM00382	ATPases associated with a variety of cellular activities
RD13_RS13180	SM00327	von Willebrand factor (vWF) type A domain
RD13_RS13205	SM01005	Alanine racemase, C-terminal domain
RD13_RS13240	SM00382	ATPases associated with a variety of cellular activities
RD13_RS13305	SM00869	Autotransporter beta-domain
RD13_RS13310	SM00869	Autotransporter beta-domain
RD13_RS13320	SM00382	ATPases associated with a variety of cellular activities
RD13_RS13320	SM01086	C-terminal, D2-small domain, of ClpB protein
RD13_RS13325	SM00100	Cyclic nucleotide-monophosphate binding domain
RD13_RS13325	SM00419	helix_turn_helix, cAMP Regulatory protein
RD13_RS13395	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS13410	SM00382	ATPases associated with a variety of cellular activities
RD13_RS13500	SM00479	RD13_RS13500
RD13_RS13560	SM00938	Nitrogen regulatory protein P-II
RD13_RS13595	SM00729	Elongator protein 3, MiaB family, Radical SAM
RD13_RS13600	SM00852	Probable molybdopterin binding domain
RD13_RS13605	SM00852	Probable molybdopterin binding domain
RD13_RS13655	SM00729	Elongator protein 3, MiaB family, Radical SAM
RD13_RS13655	SM00876	Biotin and Thiamin Synthesis associated domain
RD13_RS13680	SM00422	helix_turn_helix, mercury resistance
RD13_RS13745	SM00938	Nitrogen regulatory protein P-II
RD13_RS13755	SM00869	Autotransporter beta-domain
RD13_RS13775	SM00382	ATPases associated with a variety of cellular activities
RD13_RS13780	SM00382	ATPases associated with a variety of cellular activities
RD13_RS13825	SM00382	ATPases associated with a variety of cellular activities
RD13_RS13825	SM01086	C-terminal, D2-small domain, of ClpB protein
RD13_RS13835	SM01359	RD13_RS13835
RD13_RS13835	SM01360	RD13_RS13835
RD13_RS13845	SM00357	Cold shock protein domain
RD13_RS13910	SM00822	RD13_RS13910
RD13_RS13995	SM00670	Large family of predicted nucleotide-binding domains
RD13_RS14010	SM00382	ATPases associated with a variety of cellular activities
RD13_RS14045	SM00861	Transketolase, pyrimidine binding domain
RD13_RS14060	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS14085	SM00116	Domain in cystathionine beta-synthase and other proteins.
RD13_RS14085	SM00924	MgtE intracellular N domain
RD13_RS14135	SM00382	ATPases associated with a variety of cellular activities
RD13_RS14135	SM00930	RD13_RS14135
RD13_RS14185	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS14185	SM00895	RD13_RS14185
RD13_RS14220	SM00382	ATPases associated with a variety of cellular activities
RD13_RS14250	SM00422	helix_turn_helix, mercury resistance
RD13_RS14275	SM00822	RD13_RS14275
RD13_RS14340	SM00822	RD13_RS14340
RD13_RS14365	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RD13_RS14390	SM00829	Enoylreductase
RD13_RS14405	SM00382	ATPases associated with a variety of cellular activities
RD13_RS14430	SM00344	helix_turn_helix ASNC type
RD13_RS14475	SM00248	ankyrin repeats
RD13_RS14500	SM00382	ATPases associated with a variety of cellular activities
RD13_RS14535	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS14550	SM00382	ATPases associated with a variety of cellular activities
RD13_RS14590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS14590	SM00895	RD13_RS14590
RD13_RS14660	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
RD13_RS14660	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
RD13_RS14670	SM00342	helix_turn_helix, arabinose operon control protein
RD13_RS14705	SM00912	haemagglutination activity domain
RD13_RS14725	SM00528	Domain in histone-like proteins of HNS family
RD13_RS14765	SM00257	Lysin motif
RD13_RS14815	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RD13_RS14840	SM00448	cheY-homologous receiver domain
RD13_RS14845	SM00387	Histidine kinase-like ATPases
RD13_RS14940	SM00363	S4 RNA-binding domain
RD13_RS14970	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RD13_RS15010	SM00382	ATPases associated with a variety of cellular activities
RD13_RS15030	SM00487	DEAD-like helicases superfamily
RD13_RS15030	SM00490	helicase superfamily c-terminal domain
RD13_RS15040	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS15040	SM00895	RD13_RS15040
RD13_RS15070	SM00344	helix_turn_helix ASNC type
RD13_RS15150	SM00878	Biotin carboxylase C-terminal domain
RD13_RS15180	SM00955	RD13_RS15180
RD13_RS15210	SM00344	helix_turn_helix ASNC type
RD13_RS15240	SM00957	SecA DEAD-like domain
RD13_RS15240	SM00958	SecA preprotein cross-linking domain
RD13_RS15260	SM00864	Tubulin/FtsZ family, GTPase domain
RD13_RS15260	SM00865	Tubulin/FtsZ family, C-terminal domain
RD13_RS15265	SM00842	Cell division protein FtsA
RD13_RS15335	SM00382	ATPases associated with a variety of cellular activities
RD13_RS15350	SM00151	SWI complex, BAF60b domains
RD13_RS15385	SM00344	helix_turn_helix ASNC type
RD13_RS15495	SM00382	ATPases associated with a variety of cellular activities
RD13_RS15495	SM01086	C-terminal, D2-small domain, of ClpB protein
RD13_RS15510	SM00833	Cobalamin synthesis protein cobW C-terminal domain
RD13_RS15525	SM00382	ATPases associated with a variety of cellular activities
RD13_RS15595	SM00996	S-adenosyl-L-homocysteine hydrolase
RD13_RS15595	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
RD13_RS15650	SM00487	DEAD-like helicases superfamily
RD13_RS15650	SM00490	helicase superfamily c-terminal domain
RD13_RS15655	SM00986	Uracil DNA glycosylase superfamily
RD13_RS15655	SM00987	UreE urease accessory protein, C-terminal domain 
RD13_RS15670	SM00155	Phospholipase D. Active site motifs.
RD13_RS15675	SM00382	ATPases associated with a variety of cellular activities
RD13_RS15725	SM00344	helix_turn_helix ASNC type
RD13_RS15725	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS15765	SM00422	helix_turn_helix, mercury resistance
RD13_RS15765	SM00530	Helix-turn-helix XRE-family like proteins 
RD13_RS15800	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS15810	SM00869	Autotransporter beta-domain
RD13_RS15890	SM01400	RD13_RS15890
RD13_RS15910	SM00028	Tetratricopeptide repeats
RD13_RS15915	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
RD13_RS15915	SM01232	RD13_RS15915
RD13_RS15920	SM00849	Metallo-beta-lactamase superfamily
RD13_RS15955	SM00387	Histidine kinase-like ATPases
RD13_RS15955	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS15960	SM00448	cheY-homologous receiver domain
RD13_RS15960	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS16020	SM00984	UDP binding domain
RD13_RS16050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS16105	SM00988	UreE urease accessory protein, N-terminal domain
RD13_RS16135	SM00422	helix_turn_helix, mercury resistance
RD13_RS16155	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS16155	SM00866	RD13_RS16155
RD13_RS16235	SM00382	ATPases associated with a variety of cellular activities
RD13_RS16240	SM00382	ATPases associated with a variety of cellular activities
RD13_RS16250	SM00822	RD13_RS16250
RD13_RS16325	SM00849	Metallo-beta-lactamase superfamily
RD13_RS16330	SM00257	Lysin motif
RD13_RS16370	SM00448	cheY-homologous receiver domain
RD13_RS16370	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS16375	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RD13_RS16375	SM00387	Histidine kinase-like ATPases
RD13_RS16460	SM00382	ATPases associated with a variety of cellular activities
RD13_RS16495	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS16495	SM00866	RD13_RS16495
RD13_RS16520	SM00903	Flavin reductase like domain
RD13_RS16600	SM00925	MltA specific insert domain
RD13_RS16630	SM00905	Dihydroneopterin aldolase
RD13_RS16640	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RD13_RS16700	SM00382	ATPases associated with a variety of cellular activities
RD13_RS16720	SM00487	DEAD-like helicases superfamily
RD13_RS16720	SM00490	helicase superfamily c-terminal domain
RD13_RS16745	SM00382	ATPases associated with a variety of cellular activities
RD13_RS16865	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS16905	SM00155	Phospholipase D. Active site motifs.
RD13_RS16925	SM00834	Putative regulatory protein
RD13_RS16955	SM00116	Domain in cystathionine beta-synthase and other proteins.
RD13_RS16975	SM00382	ATPases associated with a variety of cellular activities
RD13_RS17030	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RD13_RS17040	SM01092	CO dehydrogenase flavoprotein C-terminal domain
RD13_RS17070	SM00937	RD13_RS17070
RD13_RS17100	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS17110	SM00881	CoA binding domain
RD13_RS17135	SM00344	helix_turn_helix ASNC type
RD13_RS17165	SM00881	CoA binding domain
RD13_RS17175	SM00829	Enoylreductase
RD13_RS17245	SM01130	RD13_RS17245
RD13_RS17305	SM00881	CoA binding domain
RD13_RS17310	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS17320	SM00861	Transketolase, pyrimidine binding domain
RD13_RS17360	SM00382	ATPases associated with a variety of cellular activities
RD13_RS17365	SM00382	ATPases associated with a variety of cellular activities
RD13_RS17395	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS17415	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RD13_RS17415	SM00245	tail specific protease
RD13_RS17425	SM00855	Phosphoglycerate mutase family
RD13_RS17430	SM00450	Rhodanese Homology Domain
RD13_RS17490	SM00382	ATPases associated with a variety of cellular activities
RD13_RS17510	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RD13_RS17575	SM00347	helix_turn_helix multiple antibiotic resistance protein
RD13_RS17590	SM00448	cheY-homologous receiver domain
RD13_RS17595	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RD13_RS17595	SM00387	Histidine kinase-like ATPases
RD13_RS17595	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS17665	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS17685	SM00344	helix_turn_helix ASNC type
RD13_RS17735	SM00729	Elongator protein 3, MiaB family, Radical SAM
RD13_RS17755	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS17755	SM00895	RD13_RS17755
RD13_RS17795	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS17815	SM00869	Autotransporter beta-domain
RD13_RS17845	SM01119	RD13_RS17845
RD13_RS17855	SM00244	prohibitin homologues
RD13_RS17950	SM00387	Histidine kinase-like ATPases
RD13_RS17950	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS17985	SM01234	RD13_RS17985
RD13_RS18000	SM00382	ATPases associated with a variety of cellular activities
RD13_RS18000	SM00760	Bacterial dnaA protein helix-turn-helix domain
RD13_RS18005	SM00480	DNA polymerase III beta subunit
RD13_RS18010	SM00387	Histidine kinase-like ATPases
RD13_RS18010	SM00433	TopoisomeraseII
RD13_RS18015	SM00346	helix_turn_helix isocitrate lyase regulation
RD13_RS18040	SM00342	helix_turn_helix, arabinose operon control protein
RD13_RS18040	SM00871	Bacterial transcription activator, effector binding domain
RD13_RS18060	SM00422	helix_turn_helix, mercury resistance
RD13_RS18065	SM00849	Metallo-beta-lactamase superfamily
RD13_RS18095	SM00878	Biotin carboxylase C-terminal domain
RD13_RS18095	SM01209	RD13_RS18095
RD13_RS18115	SM01119	RD13_RS18115
RD13_RS18150	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
RD13_RS18150	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
RD13_RS18150	SM00493	RD13_RS18150
RD13_RS18160	SM00382	ATPases associated with a variety of cellular activities
RD13_RS18190	SM00344	helix_turn_helix ASNC type
RD13_RS18200	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
RD13_RS18220	SM01018	B12 binding domain
RD13_RS18300	SM00838	Elongation factor G C-terminus
RD13_RS18300	SM00889	Elongation factor G, domain IV
RD13_RS18310	SM01403	RD13_RS18310
RD13_RS18330	SM01382	RD13_RS18330
RD13_RS18330	SM01383	RD13_RS18330
RD13_RS18345	SM00322	K homology RNA-binding domain
RD13_RS18380	SM01374	RD13_RS18380
RD13_RS18455	SM00363	S4 RNA-binding domain
RD13_RS18455	SM01390	RD13_RS18455
RD13_RS18460	SM00662	RNA polymerases D
RD13_RS18490	SM01004	Delta-aminolevulinic acid dehydratase
RD13_RS18520	SM01219	RD13_RS18520
RD13_RS18540	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RD13_RS18590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS18590	SM00866	RD13_RS18590
RD13_RS18635	SM00382	ATPases associated with a variety of cellular activities
RD13_RS18660	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS18660	SM00895	RD13_RS18660
RD13_RS18690	SM01130	RD13_RS18690
RD13_RS18700	SM00257	Lysin motif
RD13_RS18750	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS18760	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS18765	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RD13_RS18780	SM00382	ATPases associated with a variety of cellular activities
RD13_RS18795	SM00829	Enoylreductase
RD13_RS18845	SM00382	ATPases associated with a variety of cellular activities
RD13_RS18895	SM00984	UDP binding domain
RD13_RS18985	SM00100	Cyclic nucleotide-monophosphate binding domain
RD13_RS19010	SM00829	Enoylreductase
RD13_RS19040	SM00382	ATPases associated with a variety of cellular activities
RD13_RS19150	SM00530	Helix-turn-helix XRE-family like proteins 
RD13_RS19240	SM00342	helix_turn_helix, arabinose operon control protein
RD13_RS19355	SM00421	helix_turn_helix, Lux Regulon
RD13_RS19395	SM00382	ATPases associated with a variety of cellular activities
RD13_RS19410	SM00062	Bacterial periplasmic substrate-binding proteins
RD13_RS19415	SM00382	ATPases associated with a variety of cellular activities
RD13_RS19435	SM00478	endonuclease III
RD13_RS19440	SM00530	Helix-turn-helix XRE-family like proteins 
RD13_RS19515	SM01060	RD13_RS19515
RD13_RS19525	SM00382	ATPases associated with a variety of cellular activities
RD13_RS19545	SM00382	ATPases associated with a variety of cellular activities
RD13_RS19550	SM00382	ATPases associated with a variety of cellular activities
RD13_RS19580	SM00448	cheY-homologous receiver domain
RD13_RS19580	SM00862	Transcriptional regulatory protein, C terminal
RD13_RS19585	SM00387	Histidine kinase-like ATPases
RD13_RS19585	SM00388	His Kinase A (phosphoacceptor) domain
RD13_RS19610	SM00357	Cold shock protein domain
