locus-tag class description RD13_RS00005 PF13932 GidA associated domain RD13_RS00005 PF01134 Glucose inhibited division protein A RD13_RS00010 PF02527 rRNA small subunit methyltransferase G RD13_RS00015 PF13614 AAA domain RD13_RS00025 PF02195 ParB-like nuclease domain RD13_RS00025 PF17762 HTH domain found in ParB protein RD13_RS00030 PF00710 Asparaginase, N-terminal RD13_RS00030 PF17763 Glutaminase/Asparaginase C-terminal domain RD13_RS00035 PF00710 Asparaginase, N-terminal RD13_RS00035 PF17763 Glutaminase/Asparaginase C-terminal domain RD13_RS00055 PF00009 Elongation factor Tu GTP binding domain RD13_RS00055 PF03143 Elongation factor Tu C-terminal domain RD13_RS00055 PF03144 Elongation factor Tu domain 2 RD13_RS00065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RD13_RS00070 PF00467 KOW motif RD13_RS00070 PF02357 Transcription termination factor nusG RD13_RS00075 PF00298 Ribosomal protein L11, RNA binding domain RD13_RS00075 PF03946 Ribosomal protein L11, N-terminal domain RD13_RS00080 PF00687 Ribosomal protein L1p/L10e family RD13_RS00085 PF00466 Ribosomal protein L10 RD13_RS00090 PF00542 Ribosomal protein L7/L12 C-terminal domain RD13_RS00090 PF16320 Ribosomal protein L7/L12 dimerisation domain RD13_RS00095 PF04563 RNA polymerase beta subunit RD13_RS00095 PF04561 RNA polymerase Rpb2, domain 2 RD13_RS00095 PF04565 RNA polymerase Rpb2, domain 3 RD13_RS00095 PF10385 RNA polymerase beta subunit external 1 domain RD13_RS00095 PF00562 RNA polymerase Rpb2, domain 6 RD13_RS00095 PF04560 RNA polymerase Rpb2, domain 7 RD13_RS00100 PF00623 RNA polymerase Rpb1, domain 2 RD13_RS00100 PF05000 RNA polymerase Rpb1, domain 4 RD13_RS00100 PF04998 RNA polymerase Rpb1, domain 5 RD13_RS00100 PF04997 RNA polymerase Rpb1, domain 1 RD13_RS00100 PF04983 RNA polymerase Rpb1, domain 3 RD13_RS00130 PF00486 Transcriptional regulatory protein, C terminal RD13_RS00130 PF00072 Response regulator receiver domain RD13_RS00140 PF02515 CoA-transferase family III RD13_RS00155 PF01575 MaoC like domain RD13_RS00160 PF03466 LysR substrate binding domain RD13_RS00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS00165 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS00185 PF02091 Glycyl-tRNA synthetase alpha subunit RD13_RS00190 PF05746 DALR anticodon binding domain RD13_RS00190 PF02092 Glycyl-tRNA synthetase beta subunit RD13_RS00200 PF01553 Acyltransferase RD13_RS00210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD13_RS00215 PF01327 Polypeptide deformylase RD13_RS00250 PF02615 Malate/L-lactate dehydrogenase RD13_RS00255 PF00561 alpha/beta hydrolase fold RD13_RS00260 PF07021 Methionine biosynthesis protein MetW RD13_RS00260 PF00561 alpha/beta hydrolase fold RD13_RS00270 PF07690 Major Facilitator Superfamily RD13_RS00280 PF01177 Asp/Glu/Hydantoin racemase RD13_RS00285 PF00005 ABC transporter RD13_RS00290 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS00295 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS00300 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS00330 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS00345 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS00345 PF00970 Oxidoreductase FAD-binding domain RD13_RS00345 PF00175 Oxidoreductase NAD-binding domain RD13_RS00350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD13_RS00360 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS00390 PF00183 Hsp90 protein RD13_RS00390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS00395 PF00043 Glutathione S-transferase, C-terminal domain RD13_RS00395 PF13417 Glutathione S-transferase, N-terminal domain RD13_RS00400 PF01510 N-acetylmuramoyl-L-alanine amidase RD13_RS00410 PF01578 Cytochrome C assembly protein RD13_RS00415 PF02881 SRP54-type protein, helical bundle domain RD13_RS00415 PF00448 SRP54-type protein, GTPase domain RD13_RS00415 PF02978 Signal peptide binding domain RD13_RS00430 PF02719 Polysaccharide biosynthesis protein RD13_RS00440 PF10997 Alternate to MurJ RD13_RS00445 PF00534 Glycosyl transferases group 1 RD13_RS00445 PF00862 Sucrose synthase RD13_RS00450 PF02397 Bacterial sugar transferase RD13_RS00455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD13_RS00465 PF02350 UDP-N-acetylglucosamine 2-epimerase RD13_RS00470 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RD13_RS00475 PF00132 Bacterial transferase hexapeptide (six repeats) RD13_RS00480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RD13_RS00480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RD13_RS00485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD13_RS00490 PF00534 Glycosyl transferases group 1 RD13_RS00490 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RD13_RS00500 PF03309 Type III pantothenate kinase RD13_RS00510 PF02405 Permease MlaE RD13_RS00515 PF00005 ABC transporter RD13_RS00540 PF07943 Penicillin-binding protein 5, C-terminal domain RD13_RS00540 PF00768 D-alanyl-D-alanine carboxypeptidase RD13_RS00545 PF01063 Amino-transferase class IV RD13_RS00550 PF04359 Protein of unknown function (DUF493) RD13_RS00555 PF03099 Biotin/lipoate A/B protein ligase family RD13_RS00560 PF04055 Radical SAM superfamily RD13_RS00560 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RD13_RS00565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RD13_RS00570 PF04321 RmlD substrate binding domain RD13_RS00575 PF16363 GDP-mannose 4,6 dehydratase RD13_RS00590 PF01053 Cys/Met metabolism PLP-dependent enzyme RD13_RS00595 PF01323 DSBA-like thioredoxin domain RD13_RS00595 PF00085 Thioredoxin RD13_RS00605 PF05746 DALR anticodon binding domain RD13_RS00605 PF03485 Arginyl tRNA synthetase N terminal domain RD13_RS00605 PF00750 tRNA synthetases class I (R) RD13_RS00625 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS00630 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS00635 PF13416 Bacterial extracellular solute-binding protein RD13_RS00640 PF00005 ABC transporter RD13_RS00640 PF17912 MalK OB fold domain RD13_RS00645 PF00149 Calcineurin-like phosphoesterase RD13_RS00655 PF00005 ABC transporter RD13_RS00655 PF12857 TOBE-like domain RD13_RS00660 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS00675 PF00356 Bacterial regulatory proteins, lacI family RD13_RS00685 PF01425 Amidase RD13_RS00690 PF00682 HMGL-like RD13_RS00690 PF08502 LeuA allosteric (dimerisation) domain RD13_RS00700 PF00309 Sigma-54 factor, Activator interacting domain (AID) RD13_RS00700 PF04552 Sigma-54, DNA binding domain RD13_RS00700 PF04963 Sigma-54 factor, core binding domain RD13_RS00710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS00710 PF03466 LysR substrate binding domain RD13_RS00725 PF13609 Gram-negative porin RD13_RS00730 PF00585 C-terminal regulatory domain of Threonine dehydratase RD13_RS00730 PF00291 Pyridoxal-phosphate dependent enzyme RD13_RS00745 PF00392 Bacterial regulatory proteins, gntR family RD13_RS00745 PF07729 FCD domain RD13_RS00750 PF02515 CoA-transferase family III RD13_RS00760 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS00765 PF01494 FAD binding domain RD13_RS00770 PF01494 FAD binding domain RD13_RS00775 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS00785 PF03746 LamB/YcsF family RD13_RS00790 PF02626 Carboxyltransferase domain, subdomain A and B RD13_RS00795 PF02682 Carboxyltransferase domain, subdomain C and D RD13_RS00805 PF03466 LysR substrate binding domain RD13_RS00805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS00810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD13_RS00810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD13_RS00810 PF01842 ACT domain RD13_RS00820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS00820 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS00820 PF00672 HAMP domain RD13_RS00825 PF00072 Response regulator receiver domain RD13_RS00825 PF00486 Transcriptional regulatory protein, C terminal RD13_RS00830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS00830 PF00989 PAS fold RD13_RS00830 PF11808 Phosphate regulon sensor protein PhoR RD13_RS00830 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS00835 PF00486 Transcriptional regulatory protein, C terminal RD13_RS00835 PF00072 Response regulator receiver domain RD13_RS00840 PF01209 ubiE/COQ5 methyltransferase family RD13_RS00855 PF03109 ABC1 family RD13_RS00870 PF00005 ABC transporter RD13_RS00870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS00875 PF04536 TPM domain RD13_RS00885 PF00270 DEAD/DEAH box helicase RD13_RS00885 PF00271 Helicase conserved C-terminal domain RD13_RS00890 PF01810 LysE type translocator RD13_RS00895 PF03144 Elongation factor Tu domain 2 RD13_RS00895 PF00009 Elongation factor Tu GTP binding domain RD13_RS00895 PF16658 Class II release factor RF3, C-terminal domain RD13_RS00905 PF00210 Ferritin-like domain RD13_RS00930 PF00581 Rhodanese-like domain RD13_RS00930 PF17773 UPF0176 acylphosphatase like domain RD13_RS00935 PF01588 Putative tRNA binding domain RD13_RS00935 PF09334 tRNA synthetases class I (M) RD13_RS00945 PF10609 NUBPL iron-transfer P-loop NTPase RD13_RS00960 PF00692 dUTPase RD13_RS00985 PF01276 Orn/Lys/Arg decarboxylase, major domain RD13_RS00985 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RD13_RS00985 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RD13_RS01000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD13_RS01000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD13_RS01005 PF02535 ZIP Zinc transporter RD13_RS01010 PF01571 Aminomethyltransferase folate-binding domain RD13_RS01010 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD13_RS01015 PF01597 Glycine cleavage H-protein RD13_RS01020 PF02347 Glycine cleavage system P-protein RD13_RS01025 PF07729 FCD domain RD13_RS01025 PF00392 Bacterial regulatory proteins, gntR family RD13_RS01030 PF02515 CoA-transferase family III RD13_RS01040 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS01060 PF12146 Serine aminopeptidase, S33 RD13_RS01070 PF02426 Muconolactone delta-isomerase RD13_RS01075 PF01144 Coenzyme A transferase RD13_RS01080 PF01144 Coenzyme A transferase RD13_RS01085 PF01614 Bacterial transcriptional regulator RD13_RS01085 PF09339 IclR helix-turn-helix domain RD13_RS01095 PF02667 Short chain fatty acid transporter RD13_RS01100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD13_RS01100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD13_RS01105 PF03797 Autotransporter beta-domain RD13_RS01105 PF00082 Subtilase family RD13_RS01110 PF00311 Phosphoenolpyruvate carboxylase RD13_RS01115 PF06508 Queuosine biosynthesis protein QueC RD13_RS01140 PF01565 FAD binding domain RD13_RS01140 PF02913 FAD linked oxidases, C-terminal domain RD13_RS01145 PF00171 Aldehyde dehydrogenase family RD13_RS01150 PF13667 ThiC-associated domain RD13_RS01150 PF01964 Radical SAM ThiC family RD13_RS01155 PF07549 SecD/SecF GG Motif RD13_RS01155 PF02355 Protein export membrane protein RD13_RS01160 PF09518 HindIII restriction endonuclease RD13_RS01190 PF02627 Carboxymuconolactone decarboxylase family RD13_RS01195 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD13_RS01195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD13_RS01200 PF00392 Bacterial regulatory proteins, gntR family RD13_RS01200 PF07702 UTRA domain RD13_RS01205 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS01210 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD13_RS01220 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS01225 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RD13_RS01230 PF12627 Probable RNA and SrmB- binding site of polymerase A RD13_RS01230 PF12626 Polymerase A arginine-rich C-terminus RD13_RS01230 PF01743 Poly A polymerase head domain RD13_RS01240 PF00308 Bacterial dnaA protein RD13_RS01245 PF02769 AIR synthase related protein, C-terminal domain RD13_RS01245 PF00586 AIR synthase related protein, N-terminal domain RD13_RS01255 PF01119 DNA mismatch repair protein, C-terminal domain RD13_RS01255 PF08676 MutL C terminal dimerisation domain RD13_RS01260 PF09335 SNARE associated Golgi protein RD13_RS01265 PF01520 N-acetylmuramoyl-L-alanine amidase RD13_RS01265 PF11741 AMIN domain RD13_RS01270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RD13_RS01275 PF10415 Fumarase C C-terminus RD13_RS01275 PF00206 Lyase RD13_RS01285 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS01290 PF03466 LysR substrate binding domain RD13_RS01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS01300 PF02515 CoA-transferase family III RD13_RS01305 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS01310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS01310 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS01310 PF18158 Adaptive response protein AidB N-terminal domain RD13_RS01330 PF01654 Cytochrome bd terminal oxidase subunit I RD13_RS01335 PF02322 Cytochrome bd terminal oxidase subunit II RD13_RS01340 PF08173 Membrane bound YbgT-like protein RD13_RS01345 PF00005 ABC transporter RD13_RS01345 PF00664 ABC transporter transmembrane region RD13_RS01350 PF00005 ABC transporter RD13_RS01350 PF00664 ABC transporter transmembrane region RD13_RS01355 PF00156 Phosphoribosyl transferase domain RD13_RS01370 PF13609 Gram-negative porin RD13_RS01395 PF04386 Stringent starvation protein B RD13_RS01400 PF00043 Glutathione S-transferase, C-terminal domain RD13_RS01400 PF02798 Glutathione S-transferase, N-terminal domain RD13_RS01405 PF02167 Cytochrome C1 family RD13_RS01410 PF00032 Cytochrome b(C-terminal)/b6/petD RD13_RS01410 PF00033 Cytochrome b/b6/petB RD13_RS01415 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RD13_RS01415 PF00355 Rieske [2Fe-2S] domain RD13_RS01420 PF01741 Large-conductance mechanosensitive channel, MscL RD13_RS01425 PF01784 NIF3 (NGG1p interacting factor 3) RD13_RS01430 PF13180 PDZ domain RD13_RS01440 PF04299 Putative FMN-binding domain RD13_RS01445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD13_RS01450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS01455 PF07859 alpha/beta hydrolase fold RD13_RS01465 PF00682 HMGL-like RD13_RS01465 PF08502 LeuA allosteric (dimerisation) domain RD13_RS01470 PF12833 Helix-turn-helix domain RD13_RS01475 PF00920 Dehydratase family RD13_RS01480 PF07690 Major Facilitator Superfamily RD13_RS01485 PF03466 LysR substrate binding domain RD13_RS01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS01495 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RD13_RS01525 PF07859 alpha/beta hydrolase fold RD13_RS01535 PF02653 Branched-chain amino acid transport system / permease component RD13_RS01540 PF02653 Branched-chain amino acid transport system / permease component RD13_RS01540 PF11862 Domain of unknown function (DUF3382) RD13_RS01545 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD13_RS01545 PF00005 ABC transporter RD13_RS01550 PF00005 ABC transporter RD13_RS01565 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS01570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS01570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS01570 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS01575 PF00501 AMP-binding enzyme RD13_RS01575 PF13193 AMP-binding enzyme C-terminal domain RD13_RS01595 PF00202 Aminotransferase class-III RD13_RS01600 PF02581 Thiamine monophosphate synthase RD13_RS01605 PF08543 Phosphomethylpyrimidine kinase RD13_RS01610 PF00301 Rubredoxin RD13_RS01615 PF02622 Uncharacterized ACR, COG1678 RD13_RS01620 PF03652 Holliday junction resolvase RD13_RS01625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD13_RS01625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD13_RS01630 PF01979 Amidohydrolase family RD13_RS01635 PF01553 Acyltransferase RD13_RS01640 PF00149 Calcineurin-like phosphoesterase RD13_RS01650 PF00912 Transglycosylase RD13_RS01665 PF00501 AMP-binding enzyme RD13_RS01665 PF13193 AMP-binding enzyme C-terminal domain RD13_RS01670 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS01685 PF12706 Beta-lactamase superfamily domain RD13_RS01690 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS01710 PF03707 Bacterial signalling protein N terminal repeat RD13_RS01710 PF00563 EAL domain RD13_RS01710 PF00990 Diguanylate cyclase, GGDEF domain RD13_RS01715 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD13_RS01715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD13_RS01720 PF13532 2OG-Fe(II) oxygenase superfamily RD13_RS01725 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA RD13_RS01730 PF04463 Protein of unknown function (DUF523) RD13_RS01735 PF00005 ABC transporter RD13_RS01740 PF01032 FecCD transport family RD13_RS01745 PF01497 Periplasmic binding protein RD13_RS01750 PF05171 Haemin-degrading HemS.ChuX domain RD13_RS01755 PF07715 TonB-dependent Receptor Plug Domain RD13_RS01755 PF04886 PT repeat RD13_RS01755 PF00593 TonB dependent receptor RD13_RS01760 PF16220 Domain of unknown function (DUF4880) RD13_RS01760 PF04773 FecR protein RD13_RS01765 PF04542 Sigma-70 region 2 RD13_RS01765 PF08281 Sigma-70, region 4 RD13_RS01790 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD13_RS01800 PF07729 FCD domain RD13_RS01800 PF00392 Bacterial regulatory proteins, gntR family RD13_RS01820 PF00171 Aldehyde dehydrogenase family RD13_RS01830 PF00970 Oxidoreductase FAD-binding domain RD13_RS01830 PF00175 Oxidoreductase NAD-binding domain RD13_RS01830 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS01855 PF03458 UPF0126 domain RD13_RS01860 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD13_RS01860 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD13_RS01865 PF03372 Endonuclease/Exonuclease/phosphatase family RD13_RS01870 PF00156 Phosphoribosyl transferase domain RD13_RS01875 PF02637 GatB domain RD13_RS01875 PF02934 GatB/GatE catalytic domain RD13_RS01880 PF01425 Amidase RD13_RS01885 PF02686 Glu-tRNAGln amidotransferase C subunit RD13_RS01895 PF04085 rod shape-determining protein MreC RD13_RS01905 PF03717 Penicillin-binding Protein dimerisation domain RD13_RS01905 PF00905 Penicillin binding protein transpeptidase domain RD13_RS01910 PF01098 Cell cycle protein RD13_RS01915 PF02615 Malate/L-lactate dehydrogenase RD13_RS01920 PF00939 Sodium:sulfate symporter transmembrane region RD13_RS01925 PF00440 Bacterial regulatory proteins, tetR family RD13_RS01935 PF00696 Amino acid kinase family RD13_RS01940 PF03180 NLPA lipoprotein RD13_RS01945 PF00578 AhpC/TSA family RD13_RS01950 PF04972 BON domain RD13_RS01955 PF13580 SIS domain RD13_RS01960 PF02021 Uncharacterised protein family UPF0102 RD13_RS01965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD13_RS01970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RD13_RS01970 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RD13_RS01990 PF02515 CoA-transferase family III RD13_RS01995 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS02000 PF02515 CoA-transferase family III RD13_RS02020 PF09339 IclR helix-turn-helix domain RD13_RS02025 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS02035 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS02040 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS02040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD13_RS02040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD13_RS02045 PF02515 CoA-transferase family III RD13_RS02050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD13_RS02050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD13_RS02050 PF00205 Thiamine pyrophosphate enzyme, central domain RD13_RS02055 PF03466 LysR substrate binding domain RD13_RS02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS02065 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS02075 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS02085 PF00892 EamA-like transporter family RD13_RS02090 PF01810 LysE type translocator RD13_RS02095 PF12146 Serine aminopeptidase, S33 RD13_RS02110 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RD13_RS02115 PF00535 Glycosyl transferase family 2 RD13_RS02130 PF03616 Sodium/glutamate symporter RD13_RS02140 PF02667 Short chain fatty acid transporter RD13_RS02155 PF00929 Exonuclease RD13_RS02160 PF00873 AcrB/AcrD/AcrF family RD13_RS02170 PF00679 Elongation factor G C-terminus RD13_RS02170 PF14492 Elongation Factor G, domain II RD13_RS02170 PF03764 Elongation factor G, domain IV RD13_RS02170 PF03144 Elongation factor Tu domain 2 RD13_RS02170 PF00009 Elongation factor Tu GTP binding domain RD13_RS02175 PF00582 Universal stress protein family RD13_RS02185 PF00155 Aminotransferase class I and II RD13_RS02185 PF00392 Bacterial regulatory proteins, gntR family RD13_RS02190 PF00009 Elongation factor Tu GTP binding domain RD13_RS02190 PF00679 Elongation factor G C-terminus RD13_RS02190 PF14492 Elongation Factor G, domain II RD13_RS02190 PF03764 Elongation factor G, domain IV RD13_RS02190 PF03144 Elongation factor Tu domain 2 RD13_RS02195 PF02308 MgtC family RD13_RS02200 PF03741 Integral membrane protein TerC family RD13_RS02200 PF03471 Transporter associated domain RD13_RS02205 PF02515 CoA-transferase family III RD13_RS02210 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS02215 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS02220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS02220 PF03466 LysR substrate binding domain RD13_RS02225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS02225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS02225 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS02235 PF00108 Thiolase, N-terminal domain RD13_RS02235 PF02803 Thiolase, C-terminal domain RD13_RS02255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS02255 PF03466 LysR substrate binding domain RD13_RS02260 PF00313 'Cold-shock' DNA-binding domain RD13_RS02270 PF00392 Bacterial regulatory proteins, gntR family RD13_RS02270 PF07729 FCD domain RD13_RS02275 PF00171 Aldehyde dehydrogenase family RD13_RS02280 PF02667 Short chain fatty acid transporter RD13_RS02285 PF00970 Oxidoreductase FAD-binding domain RD13_RS02285 PF00042 Globin RD13_RS02285 PF00175 Oxidoreductase NAD-binding domain RD13_RS02290 PF01042 Endoribonuclease L-PSP RD13_RS02295 PF03466 LysR substrate binding domain RD13_RS02295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS02315 PF02515 CoA-transferase family III RD13_RS02325 PF03466 LysR substrate binding domain RD13_RS02325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS02330 PF02515 CoA-transferase family III RD13_RS02340 PF01794 Ferric reductase like transmembrane component RD13_RS02345 PF00174 Oxidoreductase molybdopterin binding domain RD13_RS02350 PF13419 Haloacid dehalogenase-like hydrolase RD13_RS02355 PF01479 S4 domain RD13_RS02355 PF00849 RNA pseudouridylate synthase RD13_RS02360 PF12111 Polyribonucleotide phosphorylase C terminal RD13_RS02360 PF10150 Ribonuclease E/G family RD13_RS02360 PF00575 S1 RNA binding domain RD13_RS02375 PF09411 Lipid A 3-O-deacylase (PagL) RD13_RS02380 PF17848 Acetyl-coA carboxylase zinc finger domain RD13_RS02380 PF01039 Carboxyl transferase domain RD13_RS02385 PF00290 Tryptophan synthase alpha chain RD13_RS02390 PF00291 Pyridoxal-phosphate dependent enzyme RD13_RS02395 PF07687 Peptidase dimerisation domain RD13_RS02395 PF01546 Peptidase family M20/M25/M40 RD13_RS02400 PF04607 Region found in RelA / SpoT proteins RD13_RS02400 PF13291 ACT domain RD13_RS02400 PF02824 TGS domain RD13_RS02405 PF06167 Glucose-regulated metallo-peptidase M90 RD13_RS02415 PF01042 Endoribonuclease L-PSP RD13_RS02420 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RD13_RS02420 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RD13_RS02425 PF00037 4Fe-4S binding domain RD13_RS02425 PF11953 Domain of unknown function (DUF3470) RD13_RS02430 PF00970 Oxidoreductase FAD-binding domain RD13_RS02430 PF00175 Oxidoreductase NAD-binding domain RD13_RS02440 PF04060 Putative Fe-S cluster RD13_RS02445 PF00730 HhH-GPD superfamily base excision DNA repair protein RD13_RS02445 PF10576 Iron-sulfur binding domain of endonuclease III RD13_RS02445 PF00633 Helix-hairpin-helix motif RD13_RS02450 PF00005 ABC transporter RD13_RS02450 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD13_RS02455 PF00005 ABC transporter RD13_RS02465 PF02653 Branched-chain amino acid transport system / permease component RD13_RS02480 PF01063 Amino-transferase class IV RD13_RS02485 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD13_RS02485 PF00005 ABC transporter RD13_RS02500 PF02632 BioY family RD13_RS02505 PF02361 Cobalt transport protein RD13_RS02510 PF00005 ABC transporter RD13_RS02515 PF01641 SelR domain RD13_RS02520 PF04279 Intracellular septation protein A RD13_RS02535 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RD13_RS02535 PF12826 Helix-hairpin-helix motif RD13_RS02535 PF03120 NAD-dependent DNA ligase OB-fold domain RD13_RS02535 PF00533 BRCA1 C Terminus (BRCT) domain RD13_RS02535 PF01653 NAD-dependent DNA ligase adenylation domain RD13_RS02545 PF02463 RecF/RecN/SMC N terminal domain RD13_RS02545 PF06470 SMC proteins Flexible Hinge Domain RD13_RS02550 PF07690 Major Facilitator Superfamily RD13_RS02555 PF03167 Uracil DNA glycosylase superfamily RD13_RS02560 PF00814 Glycoprotease family RD13_RS02565 PF00486 Transcriptional regulatory protein, C terminal RD13_RS02565 PF00072 Response regulator receiver domain RD13_RS02575 PF00672 HAMP domain RD13_RS02575 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS02575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS02580 PF00578 AhpC/TSA family RD13_RS02585 PF02627 Carboxymuconolactone decarboxylase family RD13_RS02595 PF07690 Major Facilitator Superfamily RD13_RS02605 PF00392 Bacterial regulatory proteins, gntR family RD13_RS02605 PF07729 FCD domain RD13_RS02620 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS02625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD13_RS02625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD13_RS02635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS02635 PF03466 LysR substrate binding domain RD13_RS02645 PF00202 Aminotransferase class-III RD13_RS02650 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD13_RS02650 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD13_RS02655 PF00764 Arginosuccinate synthase RD13_RS02660 PF02705 K+ potassium transporter RD13_RS02665 PF08521 Two-component sensor kinase N-terminal RD13_RS02665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS02665 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS02670 PF00486 Transcriptional regulatory protein, C terminal RD13_RS02670 PF00072 Response regulator receiver domain RD13_RS02675 PF02472 Biopolymer transport protein ExbD/TolR RD13_RS02680 PF01618 MotA/TolQ/ExbB proton channel family RD13_RS02695 PF00216 Bacterial DNA-binding protein RD13_RS02700 PF13640 2OG-Fe(II) oxygenase superfamily RD13_RS02700 PF18331 PKHD-type hydroxylase C-terminal domain RD13_RS02705 PF01053 Cys/Met metabolism PLP-dependent enzyme RD13_RS02710 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD13_RS02710 PF00588 SpoU rRNA Methylase family RD13_RS02715 PF17876 Cold shock domain RD13_RS02715 PF08461 Ribonuclease R winged-helix domain RD13_RS02715 PF00575 S1 RNA binding domain RD13_RS02715 PF00773 RNB domain RD13_RS02715 PF08206 Ribonuclease B OB domain RD13_RS02735 PF13673 Acetyltransferase (GNAT) domain RD13_RS02740 PF03547 Membrane transport protein RD13_RS02745 PF04143 Sulphur transport RD13_RS02750 PF01645 Conserved region in glutamate synthase RD13_RS02760 PF13396 Phospholipase_D-nuclease N-terminal RD13_RS02760 PF13091 PLD-like domain RD13_RS02770 PF10017 Histidine-specific methyltransferase, SAM-dependent RD13_RS02775 PF12867 DinB superfamily RD13_RS02775 PF03781 Sulfatase-modifying factor enzyme 1 RD13_RS02805 PF00072 Response regulator receiver domain RD13_RS02810 PF00990 Diguanylate cyclase, GGDEF domain RD13_RS02830 PF00890 FAD binding domain RD13_RS02835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS02835 PF03466 LysR substrate binding domain RD13_RS02845 PF00890 FAD binding domain RD13_RS02865 PF00166 Chaperonin 10 Kd subunit RD13_RS02870 PF00118 TCP-1/cpn60 chaperonin family RD13_RS02875 PF03797 Autotransporter beta-domain RD13_RS02875 PF03212 Pertactin RD13_RS02880 PF03631 Virulence factor BrkB RD13_RS02885 PF01219 Prokaryotic diacylglycerol kinase RD13_RS02890 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS02895 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RD13_RS02900 PF02464 Competence-damaged protein RD13_RS02900 PF00994 Probable molybdopterin binding domain RD13_RS02900 PF18146 Damage-inducible protein CinA KH domain RD13_RS02905 PF04608 Phosphatidylglycerophosphatase A RD13_RS02910 PF00586 AIR synthase related protein, N-terminal domain RD13_RS02910 PF02769 AIR synthase related protein, C-terminal domain RD13_RS02915 PF01029 NusB family RD13_RS02920 PF00885 6,7-dimethyl-8-ribityllumazine synthase RD13_RS02925 PF00925 GTP cyclohydrolase II RD13_RS02925 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD13_RS02945 PF00005 ABC transporter RD13_RS02955 PF00005 ABC transporter RD13_RS02960 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS02965 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS02980 PF00448 SRP54-type protein, GTPase domain RD13_RS02980 PF02881 SRP54-type protein, helical bundle domain RD13_RS02990 PF01467 Cytidylyltransferase-like RD13_RS02995 PF00037 4Fe-4S binding domain RD13_RS03000 PF03594 Benzoate membrane transport protein RD13_RS03015 PF01022 Bacterial regulatory protein, arsR family RD13_RS03030 PF03466 LysR substrate binding domain RD13_RS03030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS03045 PF00005 ABC transporter RD13_RS03045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS03050 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS03055 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS03065 PF00390 Malic enzyme, N-terminal domain RD13_RS03065 PF03949 Malic enzyme, NAD binding domain RD13_RS03065 PF01515 Phosphate acetyl/butaryl transferase RD13_RS03070 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD13_RS03075 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS03080 PF00205 Thiamine pyrophosphate enzyme, central domain RD13_RS03080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD13_RS03080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD13_RS03085 PF07729 FCD domain RD13_RS03085 PF00392 Bacterial regulatory proteins, gntR family RD13_RS03130 PF03466 LysR substrate binding domain RD13_RS03130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS03140 PF04376 Arginine-tRNA-protein transferase, N terminus RD13_RS03140 PF04377 Arginine-tRNA-protein transferase, C terminus RD13_RS03145 PF01180 Dihydroorotate dehydrogenase RD13_RS03155 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS03160 PF05785 Rho-activating domain of cytotoxic necrotizing factor RD13_RS03160 PF18807 Tripartite Tc toxins repeat RD13_RS03165 PF09339 IclR helix-turn-helix domain RD13_RS03165 PF01614 Bacterial transcriptional regulator RD13_RS03170 PF00994 Probable molybdopterin binding domain RD13_RS03170 PF18146 Damage-inducible protein CinA KH domain RD13_RS03170 PF02464 Competence-damaged protein RD13_RS03190 PF00271 Helicase conserved C-terminal domain RD13_RS03190 PF00270 DEAD/DEAH box helicase RD13_RS03205 PF01063 Amino-transferase class IV RD13_RS03220 PF00561 alpha/beta hydrolase fold RD13_RS03225 PF13181 Tetratricopeptide repeat RD13_RS03225 PF01435 Peptidase family M48 RD13_RS03230 PF00483 Nucleotidyl transferase RD13_RS03240 PF13609 Gram-negative porin RD13_RS03265 PF05195 Aminopeptidase P, N-terminal domain RD13_RS03265 PF00557 Metallopeptidase family M24 RD13_RS03275 PF01494 FAD binding domain RD13_RS03280 PF01207 Dihydrouridine synthase (Dus) RD13_RS03285 PF02954 Bacterial regulatory protein, Fis family RD13_RS03290 PF01808 AICARFT/IMPCHase bienzyme RD13_RS03290 PF02142 MGS-like domain RD13_RS03295 PF02075 Crossover junction endodeoxyribonuclease RuvC RD13_RS03300 PF07499 RuvA, C-terminal domain RD13_RS03300 PF01330 RuvA N terminal domain RD13_RS03305 PF01370 NAD dependent epimerase/dehydratase family RD13_RS03310 PF00291 Pyridoxal-phosphate dependent enzyme RD13_RS03315 PF05496 Holliday junction DNA helicase RuvB P-loop domain RD13_RS03315 PF05491 RuvB C-terminal winged helix domain RD13_RS03315 PF17864 RuvB AAA lid domain RD13_RS03320 PF09382 RQC domain RD13_RS03320 PF00570 HRDC domain RD13_RS03320 PF16124 RecQ zinc-binding RD13_RS03320 PF00270 DEAD/DEAH box helicase RD13_RS03320 PF00271 Helicase conserved C-terminal domain RD13_RS03335 PF00484 Carbonic anhydrase RD13_RS03340 PF01425 Amidase RD13_RS03345 PF13458 Periplasmic binding protein RD13_RS03350 PF02653 Branched-chain amino acid transport system / permease component RD13_RS03355 PF02653 Branched-chain amino acid transport system / permease component RD13_RS03360 PF00005 ABC transporter RD13_RS03360 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD13_RS03365 PF00005 ABC transporter RD13_RS03370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RD13_RS03370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RD13_RS03380 PF03180 NLPA lipoprotein RD13_RS03520 PF06791 Prophage tail length tape measure protein RD13_RS03585 PF02586 SOS response associated peptidase (SRAP) RD13_RS03595 PF00072 Response regulator receiver domain RD13_RS03595 PF00486 Transcriptional regulatory protein, C terminal RD13_RS03600 PF00293 NUDIX domain RD13_RS03605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD13_RS03605 PF04073 Aminoacyl-tRNA editing domain RD13_RS03605 PF03129 Anticodon binding domain RD13_RS03610 PF03061 Thioesterase superfamily RD13_RS03615 PF01618 MotA/TolQ/ExbB proton channel family RD13_RS03620 PF02472 Biopolymer transport protein ExbD/TolR RD13_RS03630 PF07676 WD40-like Beta Propeller Repeat RD13_RS03630 PF04052 TolB amino-terminal domain RD13_RS03635 PF00691 OmpA family RD13_RS03645 PF01032 FecCD transport family RD13_RS03650 PF00005 ABC transporter RD13_RS03655 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS03660 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS03675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS03675 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS03675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS03675 PF09317 Domain of unknown function (DUF1974) RD13_RS03680 PF07670 Nucleoside recognition RD13_RS03685 PF02887 Pyruvate kinase, alpha/beta domain RD13_RS03685 PF00224 Pyruvate kinase, barrel domain RD13_RS03690 PF02595 Glycerate kinase family RD13_RS03695 PF00398 Ribosomal RNA adenine dimethylase RD13_RS03700 PF00639 PPIC-type PPIASE domain RD13_RS03700 PF09312 SurA N-terminal domain RD13_RS03705 PF04453 LPS transport system D RD13_RS03710 PF01636 Phosphotransferase enzyme family RD13_RS03715 PF00483 Nucleotidyl transferase RD13_RS03725 PF01329 Pterin 4 alpha carbinolamine dehydratase RD13_RS03730 PF00691 OmpA family RD13_RS03730 PF04972 BON domain RD13_RS03750 PF00202 Aminotransferase class-III RD13_RS03755 PF01425 Amidase RD13_RS03760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS03760 PF00005 ABC transporter RD13_RS03765 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS03770 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS03775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS03795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD13_RS03800 PF03435 Saccharopine dehydrogenase NADP binding domain RD13_RS03800 PF16653 Saccharopine dehydrogenase C-terminal domain RD13_RS03815 PF04264 YceI-like domain RD13_RS03820 PF00593 TonB dependent receptor RD13_RS03820 PF07715 TonB-dependent Receptor Plug Domain RD13_RS03825 PF04773 FecR protein RD13_RS03825 PF16220 Domain of unknown function (DUF4880) RD13_RS03865 PF01472 PUA domain RD13_RS03865 PF00696 Amino acid kinase family RD13_RS03870 PF01926 50S ribosome-binding GTPase RD13_RS03870 PF01018 GTP1/OBG RD13_RS03875 PF01016 Ribosomal L27 protein RD13_RS03880 PF00829 Ribosomal prokaryotic L21 protein RD13_RS03890 PF00348 Polyprenyl synthetase RD13_RS03900 PF03466 LysR substrate binding domain RD13_RS03900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS03905 PF05378 Hydantoinase/oxoprolinase N-terminal region RD13_RS03905 PF01968 Hydantoinase/oxoprolinase RD13_RS03910 PF02538 Hydantoinase B/oxoprolinase RD13_RS03915 PF01266 FAD dependent oxidoreductase RD13_RS03925 PF00171 Aldehyde dehydrogenase family RD13_RS03930 PF02794 RTX toxin acyltransferase family RD13_RS03940 PF02382 N-terminal domain in RTX protein RD13_RS03940 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RD13_RS03940 PF03497 Anthrax toxin LF subunit RD13_RS03945 PF00005 ABC transporter RD13_RS03945 PF03412 Peptidase C39 family RD13_RS03945 PF00664 ABC transporter transmembrane region RD13_RS03950 PF13533 Biotin-lipoyl like RD13_RS03955 PF02321 Outer membrane efflux protein RD13_RS03960 PF03466 LysR substrate binding domain RD13_RS03960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS03965 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS03975 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS03980 PF00005 ABC transporter RD13_RS03985 PF01063 Amino-transferase class IV RD13_RS04005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD13_RS04005 PF00205 Thiamine pyrophosphate enzyme, central domain RD13_RS04005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD13_RS04010 PF07729 FCD domain RD13_RS04010 PF00392 Bacterial regulatory proteins, gntR family RD13_RS04020 PF00392 Bacterial regulatory proteins, gntR family RD13_RS04020 PF07729 FCD domain RD13_RS04025 PF08240 Alcohol dehydrogenase GroES-like domain RD13_RS04025 PF00107 Zinc-binding dehydrogenase RD13_RS04030 PF13193 AMP-binding enzyme C-terminal domain RD13_RS04030 PF00501 AMP-binding enzyme RD13_RS04040 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS04045 PF00005 ABC transporter RD13_RS04050 PF09084 NMT1/THI5 like RD13_RS04060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD13_RS04060 PF00205 Thiamine pyrophosphate enzyme, central domain RD13_RS04060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD13_RS04080 PF11940 Domain of unknown function (DUF3458) Ig-like fold RD13_RS04080 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RD13_RS04080 PF01433 Peptidase family M1 domain RD13_RS04085 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RD13_RS04095 PF02542 YgbB family RD13_RS04100 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RD13_RS04105 PF02559 CarD-like/TRCF domain RD13_RS04105 PF03461 TRCF domain RD13_RS04105 PF00271 Helicase conserved C-terminal domain RD13_RS04105 PF17757 UvrB interaction domain RD13_RS04105 PF00270 DEAD/DEAH box helicase RD13_RS04115 PF03466 LysR substrate binding domain RD13_RS04115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS04120 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS04125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD13_RS04125 PF00205 Thiamine pyrophosphate enzyme, central domain RD13_RS04125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD13_RS04140 PF00593 TonB dependent receptor RD13_RS04140 PF07715 TonB-dependent Receptor Plug Domain RD13_RS04145 PF00593 TonB dependent receptor RD13_RS04145 PF07715 TonB-dependent Receptor Plug Domain RD13_RS04155 PF00361 Proton-conducting membrane transporter RD13_RS04160 PF00361 Proton-conducting membrane transporter RD13_RS04160 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus RD13_RS04165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD13_RS04165 PF00361 Proton-conducting membrane transporter RD13_RS04170 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD13_RS04175 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RD13_RS04180 PF12838 4Fe-4S dicluster domain RD13_RS04185 PF00146 NADH dehydrogenase RD13_RS04190 PF00384 Molybdopterin oxidoreductase RD13_RS04190 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RD13_RS04190 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RD13_RS04195 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RD13_RS04195 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RD13_RS04195 PF10531 SLBB domain RD13_RS04205 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RD13_RS04210 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RD13_RS04215 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RD13_RS04220 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RD13_RS04225 PF13609 Gram-negative porin RD13_RS04250 PF01569 PAP2 superfamily RD13_RS04260 PF00781 Diacylglycerol kinase catalytic domain RD13_RS04265 PF03466 LysR substrate binding domain RD13_RS04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS04270 PF02028 BCCT, betaine/carnitine/choline family transporter RD13_RS04280 PF01638 HxlR-like helix-turn-helix RD13_RS04285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD13_RS04290 PF00873 AcrB/AcrD/AcrF family RD13_RS04295 PF02321 Outer membrane efflux protein RD13_RS04305 PF00127 Copper binding proteins, plastocyanin/azurin family RD13_RS04315 PF05378 Hydantoinase/oxoprolinase N-terminal region RD13_RS04315 PF01968 Hydantoinase/oxoprolinase RD13_RS04325 PF01266 FAD dependent oxidoreductase RD13_RS04330 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS04345 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD13_RS04350 PF01053 Cys/Met metabolism PLP-dependent enzyme RD13_RS04355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS04355 PF03466 LysR substrate binding domain RD13_RS04370 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS04375 PF00206 Lyase RD13_RS04375 PF14698 Argininosuccinate lyase C-terminal RD13_RS04390 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS04395 PF07476 Methylaspartate ammonia-lyase C-terminus RD13_RS04395 PF05034 Methylaspartate ammonia-lyase N-terminus RD13_RS04405 PF02028 BCCT, betaine/carnitine/choline family transporter RD13_RS04415 PF03840 Preprotein translocase SecG subunit RD13_RS04420 PF00121 Triosephosphate isomerase RD13_RS04425 PF02801 Beta-ketoacyl synthase, C-terminal domain RD13_RS04425 PF00109 Beta-ketoacyl synthase, N-terminal domain RD13_RS04425 PF16197 Ketoacyl-synthetase C-terminal extension RD13_RS04425 PF08990 Erythronolide synthase docking RD13_RS04425 PF14765 Polyketide synthase dehydratase RD13_RS04425 PF08659 KR domain RD13_RS04425 PF08240 Alcohol dehydrogenase GroES-like domain RD13_RS04425 PF00698 Acyl transferase domain RD13_RS04425 PF00550 Phosphopantetheine attachment site RD13_RS04440 PF13291 ACT domain RD13_RS04440 PF00291 Pyridoxal-phosphate dependent enzyme RD13_RS04455 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RD13_RS04455 PF01138 3' exoribonuclease family, domain 1 RD13_RS04455 PF00013 KH domain RD13_RS04455 PF03725 3' exoribonuclease family, domain 2 RD13_RS04455 PF00575 S1 RNA binding domain RD13_RS04460 PF00312 Ribosomal protein S15 RD13_RS04470 PF01066 CDP-alcohol phosphatidyltransferase RD13_RS04475 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RD13_RS04475 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RD13_RS04480 PF10369 Small subunit of acetolactate synthase RD13_RS04485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD13_RS04485 PF00205 Thiamine pyrophosphate enzyme, central domain RD13_RS04485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD13_RS04500 PF00664 ABC transporter transmembrane region RD13_RS04500 PF00005 ABC transporter RD13_RS04505 PF05724 Thiopurine S-methyltransferase (TPMT) RD13_RS04520 PF07238 PilZ domain RD13_RS04520 PF07317 Flagellar regulator YcgR RD13_RS04540 PF01966 HD domain RD13_RS04550 PF00364 Biotin-requiring enzyme RD13_RS04555 PF00364 Biotin-requiring enzyme RD13_RS04555 PF00682 HMGL-like RD13_RS04555 PF02436 Conserved carboxylase domain RD13_RS04575 PF00392 Bacterial regulatory proteins, gntR family RD13_RS04575 PF07702 UTRA domain RD13_RS04580 PF02785 Biotin carboxylase C-terminal domain RD13_RS04580 PF00289 Biotin carboxylase, N-terminal domain RD13_RS04580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD13_RS04585 PF01039 Carboxyl transferase domain RD13_RS04630 PF00005 ABC transporter RD13_RS04630 PF00664 ABC transporter transmembrane region RD13_RS04635 PF00248 Aldo/keto reductase family RD13_RS04640 PF00248 Aldo/keto reductase family RD13_RS04655 PF00149 Calcineurin-like phosphoesterase RD13_RS04660 PF17092 Penicillin-binding protein OB-like domain RD13_RS04660 PF00912 Transglycosylase RD13_RS04660 PF00905 Penicillin binding protein transpeptidase domain RD13_RS04665 PF00326 Prolyl oligopeptidase family RD13_RS04675 PF00817 impB/mucB/samB family RD13_RS04675 PF11799 impB/mucB/samB family C-terminal domain RD13_RS04675 PF11798 IMS family HHH motif RD13_RS04685 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS04690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS04690 PF03466 LysR substrate binding domain RD13_RS04715 PF07690 Major Facilitator Superfamily RD13_RS04720 PF13419 Haloacid dehalogenase-like hydrolase RD13_RS04730 PF00691 OmpA family RD13_RS04735 PF03989 DNA gyrase C-terminal domain, beta-propeller RD13_RS04735 PF00521 DNA gyrase/topoisomerase IV, subunit A RD13_RS04740 PF00266 Aminotransferase class-V RD13_RS04745 PF01842 ACT domain RD13_RS04745 PF01817 Chorismate mutase type II RD13_RS04745 PF00800 Prephenate dehydratase RD13_RS04750 PF02153 Prephenate dehydrogenase RD13_RS04755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD13_RS04760 PF02224 Cytidylate kinase RD13_RS04765 PF00575 S1 RNA binding domain RD13_RS04770 PF00216 Bacterial DNA-binding protein RD13_RS04780 PF18073 Rubredoxin metal binding domain RD13_RS04785 PF00294 pfkB family carbohydrate kinase RD13_RS04790 PF01370 NAD dependent epimerase/dehydratase family RD13_RS04795 PF10531 SLBB domain RD13_RS04805 PF00291 Pyridoxal-phosphate dependent enzyme RD13_RS04810 PF13406 Transglycosylase SLT domain RD13_RS04815 PF00850 Histone deacetylase domain RD13_RS04820 PF01012 Electron transfer flavoprotein domain RD13_RS04825 PF01012 Electron transfer flavoprotein domain RD13_RS04825 PF00766 Electron transfer flavoprotein FAD-binding domain RD13_RS04830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS04830 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS04830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS04830 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD13_RS04835 PF10417 C-terminal domain of 1-Cys peroxiredoxin RD13_RS04835 PF00578 AhpC/TSA family RD13_RS04850 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS04855 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS04860 PF12857 TOBE-like domain RD13_RS04860 PF17850 CysA C-terminal regulatory domain RD13_RS04860 PF00005 ABC transporter RD13_RS04865 PF01507 Phosphoadenosine phosphosulfate reductase family RD13_RS04870 PF01507 Phosphoadenosine phosphosulfate reductase family RD13_RS04880 PF04055 Radical SAM superfamily RD13_RS04895 PF01245 Ribosomal protein L19 RD13_RS04900 PF00293 NUDIX domain RD13_RS04910 PF00248 Aldo/keto reductase family RD13_RS04920 PF07690 Major Facilitator Superfamily RD13_RS04925 PF04345 Chorismate lyase RD13_RS04930 PF00849 RNA pseudouridylate synthase RD13_RS04930 PF01479 S4 domain RD13_RS04935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS04935 PF03466 LysR substrate binding domain RD13_RS04940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD13_RS04940 PF00529 HlyD membrane-fusion protein of T1SS RD13_RS04945 PF00873 AcrB/AcrD/AcrF family RD13_RS04950 PF02321 Outer membrane efflux protein RD13_RS04960 PF02630 SCO1/SenC RD13_RS04965 PF01432 Peptidase family M3 RD13_RS04970 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD13_RS04970 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD13_RS04975 PF00072 Response regulator receiver domain RD13_RS04975 PF00196 Bacterial regulatory proteins, luxR family RD13_RS04980 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS04980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS04980 PF00989 PAS fold RD13_RS04985 PF17831 Pyruvate dehydrogenase E1 component middle domain RD13_RS04985 PF00456 Transketolase, thiamine diphosphate binding domain RD13_RS04990 PF00364 Biotin-requiring enzyme RD13_RS04990 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD13_RS04990 PF02817 e3 binding domain RD13_RS04995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD13_RS04995 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS05000 PF00700 Bacterial flagellin C-terminal helical region RD13_RS05000 PF00669 Bacterial flagellin N-terminal helical region RD13_RS05010 PF04452 RNA methyltransferase RD13_RS05015 PF00456 Transketolase, thiamine diphosphate binding domain RD13_RS05015 PF02780 Transketolase, C-terminal domain RD13_RS05015 PF02779 Transketolase, pyrimidine binding domain RD13_RS05020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD13_RS05020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RD13_RS05025 PF00162 Phosphoglycerate kinase RD13_RS05035 PF00871 Acetokinase family RD13_RS05040 PF01515 Phosphate acetyl/butaryl transferase RD13_RS05045 PF11339 Protein of unknown function (DUF3141) RD13_RS05050 PF02798 Glutathione S-transferase, N-terminal domain RD13_RS05050 PF14834 Glutathione S-transferase, C-terminal domain RD13_RS05070 PF01556 DnaJ C terminal domain RD13_RS05070 PF00226 DnaJ domain RD13_RS05080 PF03591 AzlC protein RD13_RS05090 PF00994 Probable molybdopterin binding domain RD13_RS05100 PF01476 LysM domain RD13_RS05100 PF01551 Peptidase family M23 RD13_RS05100 PF08525 Opacity-associated protein A N-terminal motif RD13_RS05110 PF01176 Translation initiation factor 1A / IF-1 RD13_RS05120 PF04545 Sigma-70, region 4 RD13_RS05120 PF04542 Sigma-70 region 2 RD13_RS05120 PF04539 Sigma-70 region 3 RD13_RS05125 PF05247 Flagellar transcriptional activator (FlhD) RD13_RS05130 PF05280 Flagellar transcriptional activator (FlhC) RD13_RS05135 PF01618 MotA/TolQ/ExbB proton channel family RD13_RS05140 PF00691 OmpA family RD13_RS05140 PF13677 Membrane MotB of proton-channel complex MotA/MotB RD13_RS05145 PF00072 Response regulator receiver domain RD13_RS05150 PF01627 Hpt domain RD13_RS05150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS05150 PF02895 Signal transducing histidine kinase, homodimeric domain RD13_RS05150 PF09078 CheY binding RD13_RS05150 PF01584 CheW-like domain RD13_RS05155 PF01584 CheW-like domain RD13_RS05160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD13_RS05160 PF00672 HAMP domain RD13_RS05160 PF02203 Tar ligand binding domain homologue RD13_RS05170 PF00072 Response regulator receiver domain RD13_RS05170 PF01339 CheB methylesterase RD13_RS05175 PF00072 Response regulator receiver domain RD13_RS05180 PF04344 Chemotaxis phosphatase, CheZ RD13_RS05205 PF00248 Aldo/keto reductase family RD13_RS05210 PF00795 Carbon-nitrogen hydrolase RD13_RS05215 PF00571 CBS domain RD13_RS05215 PF03471 Transporter associated domain RD13_RS05220 PF02130 Uncharacterized protein family UPF0054 RD13_RS05225 PF02562 PhoH-like protein RD13_RS05230 PF00919 Uncharacterized protein family UPF0004 RD13_RS05230 PF01938 TRAM domain RD13_RS05230 PF04055 Radical SAM superfamily RD13_RS05245 PF02355 Protein export membrane protein RD13_RS05245 PF07549 SecD/SecF GG Motif RD13_RS05250 PF13721 SecD export protein N-terminal TM region RD13_RS05250 PF02355 Protein export membrane protein RD13_RS05250 PF07549 SecD/SecF GG Motif RD13_RS05255 PF02699 Preprotein translocase subunit RD13_RS05260 PF01702 Queuine tRNA-ribosyltransferase RD13_RS05265 PF02547 Queuosine biosynthesis protein RD13_RS05270 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RD13_RS05285 PF03212 Pertactin RD13_RS05285 PF03797 Autotransporter beta-domain RD13_RS05290 PF14824 Sirohaem biosynthesis protein central RD13_RS05290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RD13_RS05290 PF10414 Sirohaem synthase dimerisation region RD13_RS05315 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RD13_RS05320 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RD13_RS05320 PF01464 Transglycosylase SLT domain RD13_RS05325 PF00155 Aminotransferase class I and II RD13_RS05335 PF00390 Malic enzyme, N-terminal domain RD13_RS05335 PF03949 Malic enzyme, NAD binding domain RD13_RS05335 PF01515 Phosphate acetyl/butaryl transferase RD13_RS05345 PF01337 Barstar (barnase inhibitor) RD13_RS05360 PF00005 ABC transporter RD13_RS05365 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS05370 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS05375 PF12849 PBP superfamily domain RD13_RS05380 PF02503 Polyphosphate kinase middle domain RD13_RS05380 PF13090 Polyphosphate kinase C-terminal domain 2 RD13_RS05380 PF17941 Polyphosphate kinase C-terminal domain 1 RD13_RS05380 PF13089 Polyphosphate kinase N-terminal domain RD13_RS05385 PF02541 Ppx/GppA phosphatase family RD13_RS05395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD13_RS05395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD13_RS05395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD13_RS05395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD13_RS05400 PF00809 Pterin binding enzyme RD13_RS05405 PF06480 FtsH Extracellular RD13_RS05405 PF17862 AAA+ lid domain RD13_RS05405 PF01434 Peptidase family M41 RD13_RS05405 PF00004 ATPase family associated with various cellular activities (AAA) RD13_RS05410 PF01728 FtsJ-like methyltransferase RD13_RS05415 PF01985 CRS1 / YhbY (CRM) domain RD13_RS05435 PF01636 Phosphotransferase enzyme family RD13_RS05440 PF01207 Dihydrouridine synthase (Dus) RD13_RS05455 PF03631 Virulence factor BrkB RD13_RS05465 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RD13_RS05470 PF00486 Transcriptional regulatory protein, C terminal RD13_RS05470 PF00072 Response regulator receiver domain RD13_RS05475 PF07689 KaiB domain RD13_RS05475 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS05475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS05485 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD13_RS05485 PF00005 ABC transporter RD13_RS05505 PF00005 ABC transporter RD13_RS05510 PF00501 AMP-binding enzyme RD13_RS05515 PF00440 Bacterial regulatory proteins, tetR family RD13_RS05515 PF17932 Tetracyclin repressor-like, C-terminal domain RD13_RS05525 PF00152 tRNA synthetases class II (D, K and N) RD13_RS05525 PF01336 OB-fold nucleic acid binding domain RD13_RS05530 PF00106 short chain dehydrogenase RD13_RS05535 PF00472 RF-1 domain RD13_RS05535 PF03462 PCRF domain RD13_RS05540 PF17768 RecJ OB domain RD13_RS05540 PF02272 DHHA1 domain RD13_RS05540 PF01368 DHH family RD13_RS05550 PF02687 FtsX-like permease family RD13_RS05550 PF12704 MacB-like periplasmic core domain RD13_RS05555 PF00005 ABC transporter RD13_RS05560 PF01026 TatD related DNase RD13_RS05595 PF02811 PHP domain RD13_RS05600 PF03449 Transcription elongation factor, N-terminal RD13_RS05600 PF01272 Transcription elongation factor, GreA/GreB, C-term RD13_RS05610 PF16970 Type-1 fimbrial protein, A RD13_RS05615 PF03949 Malic enzyme, NAD binding domain RD13_RS05615 PF00390 Malic enzyme, N-terminal domain RD13_RS05615 PF01515 Phosphate acetyl/butaryl transferase RD13_RS05620 PF17831 Pyruvate dehydrogenase E1 component middle domain RD13_RS05620 PF00456 Transketolase, thiamine diphosphate binding domain RD13_RS05625 PF01037 Lrp/AsnC ligand binding domain RD13_RS05630 PF03169 OPT oligopeptide transporter protein RD13_RS05635 PF03169 OPT oligopeptide transporter protein RD13_RS05640 PF00676 Dehydrogenase E1 component RD13_RS05640 PF16870 2-oxoglutarate dehydrogenase C-terminal RD13_RS05640 PF02779 Transketolase, pyrimidine binding domain RD13_RS05640 PF16078 2-oxoglutarate dehydrogenase N-terminus RD13_RS05645 PF02817 e3 binding domain RD13_RS05645 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD13_RS05645 PF00364 Biotin-requiring enzyme RD13_RS05650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD13_RS05650 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS05655 PF03969 AFG1-like ATPase RD13_RS05665 PF03466 LysR substrate binding domain RD13_RS05665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS05675 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS05695 PF00579 tRNA synthetases class I (W and Y) RD13_RS05700 PF16921 Tex protein YqgF-like domain RD13_RS05700 PF17674 HHH domain RD13_RS05700 PF00575 S1 RNA binding domain RD13_RS05700 PF09371 Tex-like protein N-terminal domain RD13_RS05705 PF13307 Helicase C-terminal domain RD13_RS05705 PF04851 Type III restriction enzyme, res subunit RD13_RS05710 PF13525 Outer membrane lipoprotein RD13_RS05715 PF01479 S4 domain RD13_RS05715 PF00849 RNA pseudouridylate synthase RD13_RS05720 PF02578 Multi-copper polyphenol oxidoreductase laccase RD13_RS05725 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RD13_RS05730 PF00106 short chain dehydrogenase RD13_RS05735 PF07879 PHB/PHA accumulation regulator DNA-binding domain RD13_RS05735 PF05233 PHB accumulation regulatory domain RD13_RS05740 PF10634 Fe2+ transport protein RD13_RS05750 PF03239 Iron permease FTR1 family RD13_RS05760 PF02567 Phenazine biosynthesis-like protein RD13_RS05780 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS05785 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RD13_RS05785 PF13378 Enolase C-terminal domain-like RD13_RS05790 PF03466 LysR substrate binding domain RD13_RS05790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS05800 PF07690 Major Facilitator Superfamily RD13_RS05815 PF17676 LD-carboxypeptidase C-terminal domain RD13_RS05815 PF02016 LD-carboxypeptidase N-terminal domain RD13_RS05825 PF03466 LysR substrate binding domain RD13_RS05825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS05830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD13_RS05830 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD13_RS05835 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS05860 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RD13_RS05880 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS05885 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD13_RS05885 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD13_RS05890 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD13_RS05895 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RD13_RS05895 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RD13_RS05895 PF02769 AIR synthase related protein, C-terminal domain RD13_RS05900 PF05594 Haemagluttinin repeat RD13_RS05900 PF13332 Hemagglutinin repeat RD13_RS05900 PF05860 haemagglutination activity domain RD13_RS05900 PF13018 Extended Signal Peptide of Type V secretion system RD13_RS05925 PF00596 Class II Aldolase and Adducin N-terminal domain RD13_RS05930 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS05935 PF01242 6-pyruvoyl tetrahydropterin synthase RD13_RS05945 PF00472 RF-1 domain RD13_RS05965 PF00701 Dihydrodipicolinate synthetase family RD13_RS05970 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS05995 PF14537 Cytochrome c3 RD13_RS05995 PF00890 FAD binding domain RD13_RS06000 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS06015 PF01266 FAD dependent oxidoreductase RD13_RS06015 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RD13_RS06020 PF08220 DeoR-like helix-turn-helix domain RD13_RS06020 PF00455 DeoR C terminal sensor domain RD13_RS06025 PF00005 ABC transporter RD13_RS06025 PF17912 MalK OB fold domain RD13_RS06030 PF00005 ABC transporter RD13_RS06030 PF17912 MalK OB fold domain RD13_RS06040 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS06065 PF01037 Lrp/AsnC ligand binding domain RD13_RS06070 PF01266 FAD dependent oxidoreductase RD13_RS06075 PF12320 Type 5 capsule protein repressor C-terminal domain RD13_RS06075 PF00149 Calcineurin-like phosphoesterase RD13_RS06100 PF00196 Bacterial regulatory proteins, luxR family RD13_RS06100 PF00072 Response regulator receiver domain RD13_RS06120 PF00571 CBS domain RD13_RS06120 PF00478 IMP dehydrogenase / GMP reductase domain RD13_RS06125 PF00117 Glutamine amidotransferase class-I RD13_RS06125 PF00958 GMP synthase C terminal domain RD13_RS06125 PF02540 NAD synthase RD13_RS06135 PF07804 HipA-like C-terminal domain RD13_RS06135 PF13657 HipA N-terminal domain RD13_RS06145 PF07690 Major Facilitator Superfamily RD13_RS06160 PF01979 Amidohydrolase family RD13_RS06170 PF00005 ABC transporter RD13_RS06175 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS06200 PF01965 DJ-1/PfpI family RD13_RS06205 PF00916 Sulfate permease family RD13_RS06205 PF01740 STAS domain RD13_RS06210 PF00753 Metallo-beta-lactamase superfamily RD13_RS06210 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RD13_RS06210 PF10996 Beta-Casp domain RD13_RS06225 PF12706 Beta-lactamase superfamily domain RD13_RS06230 PF01965 DJ-1/PfpI family RD13_RS06230 PF12833 Helix-turn-helix domain RD13_RS06235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS06235 PF03466 LysR substrate binding domain RD13_RS06250 PF00107 Zinc-binding dehydrogenase RD13_RS06250 PF08240 Alcohol dehydrogenase GroES-like domain RD13_RS06255 PF07690 Major Facilitator Superfamily RD13_RS06260 PF00392 Bacterial regulatory proteins, gntR family RD13_RS06260 PF00155 Aminotransferase class I and II RD13_RS06270 PF01810 LysE type translocator RD13_RS06280 PF01546 Peptidase family M20/M25/M40 RD13_RS06280 PF07687 Peptidase dimerisation domain RD13_RS06285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS06290 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS06295 PF12911 N-terminal TM domain of oligopeptide transport permease C RD13_RS06295 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS06300 PF00005 ABC transporter RD13_RS06300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS06305 PF00356 Bacterial regulatory proteins, lacI family RD13_RS06330 PF09335 SNARE associated Golgi protein RD13_RS06340 PF13847 Methyltransferase domain RD13_RS06355 PF00155 Aminotransferase class I and II RD13_RS06355 PF00392 Bacterial regulatory proteins, gntR family RD13_RS06365 PF00692 dUTPase RD13_RS06375 PF01632 Ribosomal protein L35 RD13_RS06380 PF00453 Ribosomal protein L20 RD13_RS06385 PF01409 tRNA synthetases class II core domain (F) RD13_RS06385 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RD13_RS06390 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RD13_RS06390 PF01588 Putative tRNA binding domain RD13_RS06390 PF03147 Ferredoxin-fold anticodon binding domain RD13_RS06390 PF03484 tRNA synthetase B5 domain RD13_RS06390 PF03483 B3/4 domain RD13_RS06395 PF00216 Bacterial DNA-binding protein RD13_RS06445 PF04231 Endonuclease I RD13_RS06465 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RD13_RS06465 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RD13_RS06470 PF04381 Putative exonuclease, RdgC RD13_RS06480 PF02515 CoA-transferase family III RD13_RS06485 PF03466 LysR substrate binding domain RD13_RS06485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS06505 PF00106 short chain dehydrogenase RD13_RS06515 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS06520 PF00005 ABC transporter RD13_RS06520 PF08402 TOBE domain RD13_RS06525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD13_RS06525 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS06525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD13_RS06530 PF08946 Osmosensory transporter coiled coil RD13_RS06530 PF00083 Sugar (and other) transporter RD13_RS06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS06535 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS06540 PF00486 Transcriptional regulatory protein, C terminal RD13_RS06540 PF00072 Response regulator receiver domain RD13_RS06545 PF00154 recA bacterial DNA recombination protein RD13_RS06550 PF02631 RecX family RD13_RS06555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS06555 PF03466 LysR substrate binding domain RD13_RS06560 PF01717 Cobalamin-independent synthase, Catalytic domain RD13_RS06560 PF08267 Cobalamin-independent synthase, N-terminal domain RD13_RS06570 PF08442 ATP-grasp domain RD13_RS06570 PF00549 CoA-ligase RD13_RS06575 PF00549 CoA-ligase RD13_RS06575 PF02629 CoA binding domain RD13_RS06580 PF03741 Integral membrane protein TerC family RD13_RS06585 PF03741 Integral membrane protein TerC family RD13_RS06590 PF03900 Porphobilinogen deaminase, C-terminal domain RD13_RS06590 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RD13_RS06610 PF00719 Inorganic pyrophosphatase RD13_RS06615 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD13_RS06650 PF00263 Bacterial type II and III secretion system protein RD13_RS06650 PF04972 BON domain RD13_RS06650 PF13629 Pilus formation protein N terminal region RD13_RS06655 PF00437 Type II/IV secretion system protein RD13_RS06675 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS06680 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RD13_RS06680 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RD13_RS06685 PF02615 Malate/L-lactate dehydrogenase RD13_RS06690 PF03466 LysR substrate binding domain RD13_RS06690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS06700 PF01266 FAD dependent oxidoreductase RD13_RS06705 PF04267 Sarcosine oxidase, delta subunit family RD13_RS06710 PF08669 Glycine cleavage T-protein C-terminal barrel domain RD13_RS06710 PF17806 Sarcosine oxidase A3 domain RD13_RS06710 PF01571 Aminomethyltransferase folate-binding domain RD13_RS06710 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS06720 PF00551 Formyl transferase RD13_RS06725 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS06735 PF00561 alpha/beta hydrolase fold RD13_RS06745 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RD13_RS06745 PF01565 FAD binding domain RD13_RS06750 PF05173 Dihydrodipicolinate reductase, C-terminus RD13_RS06750 PF01113 Dihydrodipicolinate reductase, N-terminus RD13_RS06755 PF04355 SmpA / OmlA family RD13_RS06760 PF01475 Ferric uptake regulator family RD13_RS06765 PF02463 RecF/RecN/SMC N terminal domain RD13_RS06770 PF01513 ATP-NAD kinase RD13_RS06775 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RD13_RS06775 PF01628 HrcA protein C terminal domain RD13_RS06780 PF00762 Ferrochelatase RD13_RS06790 PF01025 GrpE RD13_RS06800 PF00012 Hsp70 protein RD13_RS06805 PF00226 DnaJ domain RD13_RS06805 PF00684 DnaJ central domain RD13_RS06805 PF01556 DnaJ C terminal domain RD13_RS06810 PF05193 Peptidase M16 inactive domain RD13_RS06810 PF00675 Insulinase (Peptidase family M16) RD13_RS06830 PF01434 Peptidase family M41 RD13_RS06830 PF17862 AAA+ lid domain RD13_RS06830 PF00004 ATPase family associated with various cellular activities (AAA) RD13_RS06840 PF00034 Cytochrome c RD13_RS06855 PF00180 Isocitrate/isopropylmalate dehydrogenase RD13_RS06875 PF00072 Response regulator receiver domain RD13_RS06875 PF00486 Transcriptional regulatory protein, C terminal RD13_RS06880 PF13493 Domain of unknown function (DUF4118) RD13_RS06880 PF02702 Osmosensitive K+ channel His kinase sensor domain RD13_RS06880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS06880 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS06880 PF13492 GAF domain RD13_RS06885 PF02669 K+-transporting ATPase, c chain RD13_RS06895 PF03814 Potassium-transporting ATPase A subunit RD13_RS06905 PF00474 Sodium:solute symporter family RD13_RS06920 PF00893 Small Multidrug Resistance protein RD13_RS06925 PF00488 MutS domain V RD13_RS06925 PF01713 Smr domain RD13_RS06930 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS06935 PF09397 Ftsk gamma domain RD13_RS06935 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RD13_RS06935 PF17854 FtsK alpha domain RD13_RS06935 PF01580 FtsK/SpoIIIE family RD13_RS06940 PF03548 Outer membrane lipoprotein carrier protein LolA RD13_RS06945 PF12002 MgsA AAA+ ATPase C terminal RD13_RS06945 PF00004 ATPase family associated with various cellular activities (AAA) RD13_RS06945 PF16193 AAA C-terminal domain RD13_RS06950 PF02403 Seryl-tRNA synthetase N-terminal domain RD13_RS06950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD13_RS06975 PF17151 Periplasmic sensor domain RD13_RS06975 PF00990 Diguanylate cyclase, GGDEF domain RD13_RS06990 PF07660 Secretin and TonB N terminus short domain RD13_RS06990 PF07715 TonB-dependent Receptor Plug Domain RD13_RS06990 PF00593 TonB dependent receptor RD13_RS06995 PF07690 Major Facilitator Superfamily RD13_RS07015 PF04183 IucA / IucC family RD13_RS07015 PF06276 Ferric iron reductase FhuF-like transporter RD13_RS07025 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RD13_RS07035 PF02254 TrkA-N domain RD13_RS07035 PF00999 Sodium/hydrogen exchanger family RD13_RS07040 PF00106 short chain dehydrogenase RD13_RS07050 PF03883 Peroxide stress protein YaaA RD13_RS07060 PF12805 FUSC-like inner membrane protein yccS RD13_RS07070 PF00990 Diguanylate cyclase, GGDEF domain RD13_RS07080 PF04055 Radical SAM superfamily RD13_RS07080 PF06969 HemN C-terminal domain RD13_RS07090 PF00196 Bacterial regulatory proteins, luxR family RD13_RS07095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RD13_RS07095 PF02824 TGS domain RD13_RS07095 PF03129 Anticodon binding domain RD13_RS07095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD13_RS07100 PF00707 Translation initiation factor IF-3, C-terminal domain RD13_RS07100 PF05198 Translation initiation factor IF-3, N-terminal domain RD13_RS07105 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RD13_RS07105 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RD13_RS07115 PF00381 PTS HPr component phosphorylation site RD13_RS07120 PF02896 PEP-utilising enzyme, TIM barrel domain RD13_RS07120 PF00391 PEP-utilising enzyme, mobile domain RD13_RS07120 PF05524 PEP-utilising enzyme, N-terminal RD13_RS07130 PF02423 Ornithine cyclodeaminase/mu-crystallin family RD13_RS07140 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS07145 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS07150 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS07155 PF00005 ABC transporter RD13_RS07170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD13_RS07170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD13_RS07180 PF02293 AmiS/UreI family transporter RD13_RS07185 PF03069 Acetamidase/Formamidase family RD13_RS07200 PF01116 Fructose-bisphosphate aldolase class-II RD13_RS07210 PF01259 SAICAR synthetase RD13_RS07215 PF15723 Motility quorum-sensing regulator, toxin of MqsA RD13_RS07220 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD13_RS07225 PF02600 Disulfide bond formation protein DsbB RD13_RS07230 PF00731 AIR carboxylase RD13_RS07235 PF02222 ATP-grasp domain RD13_RS07235 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RD13_RS07240 PF03481 Putative GTP-binding controlling metal-binding RD13_RS07240 PF01300 Telomere recombination RD13_RS07245 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS07250 PF01614 Bacterial transcriptional regulator RD13_RS07250 PF09339 IclR helix-turn-helix domain RD13_RS07255 PF00491 Arginase family RD13_RS07260 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS07265 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS07270 PF00005 ABC transporter RD13_RS07275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD13_RS07275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD13_RS07285 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS07285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS07285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS07290 PF00205 Thiamine pyrophosphate enzyme, central domain RD13_RS07290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD13_RS07290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD13_RS07295 PF03466 LysR substrate binding domain RD13_RS07295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS07300 PF00589 Phage integrase family RD13_RS07300 PF02899 Phage integrase, N-terminal SAM-like domain RD13_RS07305 PF04073 Aminoacyl-tRNA editing domain RD13_RS07310 PF01174 SNO glutamine amidotransferase family RD13_RS07325 PF00768 D-alanyl-D-alanine carboxypeptidase RD13_RS07335 PF07690 Major Facilitator Superfamily RD13_RS07345 PF00580 UvrD/REP helicase N-terminal domain RD13_RS07345 PF12705 PD-(D/E)XK nuclease superfamily RD13_RS07345 PF13361 UvrD-like helicase C-terminal domain RD13_RS07355 PF12169 DNA polymerase III subunits gamma and tau domain III RD13_RS07355 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RD13_RS07355 PF12170 DNA polymerase III tau subunit V interacting with alpha RD13_RS07360 PF02575 YbaB/EbfC DNA-binding family RD13_RS07365 PF02132 RecR protein RD13_RS07365 PF13662 Toprim domain RD13_RS07385 PF04228 Putative neutral zinc metallopeptidase RD13_RS07390 PF01300 Telomere recombination RD13_RS07425 PF03358 NADPH-dependent FMN reductase RD13_RS07430 PF07311 Dodecin RD13_RS07435 PF05188 MutS domain II RD13_RS07435 PF01624 MutS domain I RD13_RS07435 PF00488 MutS domain V RD13_RS07435 PF05190 MutS family domain IV RD13_RS07435 PF05192 MutS domain III RD13_RS07440 PF08007 Cupin superfamily protein RD13_RS07445 PF16970 Type-1 fimbrial protein, A RD13_RS07450 PF06804 NlpB/DapX lipoprotein RD13_RS07455 PF00701 Dihydrodipicolinate synthetase family RD13_RS07460 PF02163 Peptidase family M50 RD13_RS07470 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS07475 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS07480 PF00005 ABC transporter RD13_RS07485 PF13291 ACT domain RD13_RS07485 PF04607 Region found in RelA / SpoT proteins RD13_RS07485 PF02824 TGS domain RD13_RS07490 PF01192 RNA polymerase Rpb6 RD13_RS07495 PF00625 Guanylate kinase RD13_RS07500 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD13_RS07505 PF00034 Cytochrome c RD13_RS07515 PF00877 NlpC/P60 family RD13_RS07520 PF01048 Phosphorylase superfamily RD13_RS07520 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RD13_RS07540 PF08340 Domain of unknown function (DUF1732) RD13_RS07540 PF03755 YicC-like family, N-terminal region RD13_RS07545 PF01138 3' exoribonuclease family, domain 1 RD13_RS07545 PF03725 3' exoribonuclease family, domain 2 RD13_RS07555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS07555 PF03466 LysR substrate binding domain RD13_RS07560 PF00672 HAMP domain RD13_RS07560 PF00990 Diguanylate cyclase, GGDEF domain RD13_RS07560 PF00563 EAL domain RD13_RS07560 PF17154 Gammaproteobacterial periplasmic sensor domain RD13_RS07565 PF01725 Ham1 family RD13_RS07575 PF06969 HemN C-terminal domain RD13_RS07575 PF04055 Radical SAM superfamily RD13_RS07580 PF00120 Glutamine synthetase, catalytic domain RD13_RS07580 PF03951 Glutamine synthetase, beta-Grasp domain RD13_RS07585 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS07585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS07585 PF00989 PAS fold RD13_RS07590 PF02954 Bacterial regulatory protein, Fis family RD13_RS07590 PF00072 Response regulator receiver domain RD13_RS07590 PF00158 Sigma-54 interaction domain RD13_RS07595 PF03466 LysR substrate binding domain RD13_RS07595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS07600 PF02678 Pirin RD13_RS07600 PF17954 Quercetinase C-terminal cupin domain RD13_RS07605 PF05726 Pirin C-terminal cupin domain RD13_RS07605 PF02678 Pirin RD13_RS07615 PF08402 TOBE domain RD13_RS07615 PF00005 ABC transporter RD13_RS07620 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS07630 PF00970 Oxidoreductase FAD-binding domain RD13_RS07630 PF00175 Oxidoreductase NAD-binding domain RD13_RS07635 PF03466 LysR substrate binding domain RD13_RS07635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS07645 PF00248 Aldo/keto reductase family RD13_RS07655 PF01042 Endoribonuclease L-PSP RD13_RS07660 PF00270 DEAD/DEAH box helicase RD13_RS07660 PF00271 Helicase conserved C-terminal domain RD13_RS07660 PF17191 RecG wedge domain RD13_RS07665 PF03466 LysR substrate binding domain RD13_RS07665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS07670 PF03466 LysR substrate binding domain RD13_RS07670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS07675 PF00171 Aldehyde dehydrogenase family RD13_RS07680 PF00210 Ferritin-like domain RD13_RS07705 PF00005 ABC transporter RD13_RS07715 PF00534 Glycosyl transferases group 1 RD13_RS07725 PF02563 Polysaccharide biosynthesis/export protein RD13_RS07730 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD13_RS07730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD13_RS07730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD13_RS07735 PF01370 NAD dependent epimerase/dehydratase family RD13_RS07740 PF05159 Capsule polysaccharide biosynthesis protein RD13_RS07745 PF05159 Capsule polysaccharide biosynthesis protein RD13_RS07755 PF00106 short chain dehydrogenase RD13_RS07770 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS07770 PF14759 Reductase C-terminal RD13_RS07780 PF00005 ABC transporter RD13_RS07785 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD13_RS07785 PF00005 ABC transporter RD13_RS07790 PF11862 Domain of unknown function (DUF3382) RD13_RS07790 PF02653 Branched-chain amino acid transport system / permease component RD13_RS07800 PF03741 Integral membrane protein TerC family RD13_RS07810 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS07825 PF07726 ATPase family associated with various cellular activities (AAA) RD13_RS07825 PF17863 AAA lid domain RD13_RS07855 PF00884 Sulfatase RD13_RS07880 PF00196 Bacterial regulatory proteins, luxR family RD13_RS07880 PF00072 Response regulator receiver domain RD13_RS07885 PF03797 Autotransporter beta-domain RD13_RS07885 PF12951 Passenger-associated-transport-repeat RD13_RS07885 PF00082 Subtilase family RD13_RS07890 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RD13_RS07895 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RD13_RS07900 PF00043 Glutathione S-transferase, C-terminal domain RD13_RS07900 PF02798 Glutathione S-transferase, N-terminal domain RD13_RS07905 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD13_RS07915 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS07925 PF01070 FMN-dependent dehydrogenase RD13_RS07930 PF01557 Fumarylacetoacetate (FAA) hydrolase family RD13_RS07945 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS07950 PF03466 LysR substrate binding domain RD13_RS07950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS07955 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS07980 PF03358 NADPH-dependent FMN reductase RD13_RS08005 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS08015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS08015 PF03466 LysR substrate binding domain RD13_RS08030 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS08035 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RD13_RS08035 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RD13_RS08035 PF13244 Domain of unknown function (DUF4040) RD13_RS08035 PF00361 Proton-conducting membrane transporter RD13_RS08040 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RD13_RS08045 PF00361 Proton-conducting membrane transporter RD13_RS08050 PF01899 Na+/H+ ion antiporter subunit RD13_RS08055 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RD13_RS08080 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD13_RS08085 PF02016 LD-carboxypeptidase N-terminal domain RD13_RS08085 PF17676 LD-carboxypeptidase C-terminal domain RD13_RS08090 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS08095 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD13_RS08105 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS08110 PF12848 ABC transporter RD13_RS08110 PF00005 ABC transporter RD13_RS08115 PF00005 ABC transporter RD13_RS08145 PF00042 Globin RD13_RS08145 PF00175 Oxidoreductase NAD-binding domain RD13_RS08145 PF00970 Oxidoreductase FAD-binding domain RD13_RS08150 PF02082 Transcriptional regulator RD13_RS08155 PF01266 FAD dependent oxidoreductase RD13_RS08170 PF01571 Aminomethyltransferase folate-binding domain RD13_RS08175 PF02618 YceG-like family RD13_RS08180 PF02223 Thymidylate kinase RD13_RS08185 PF12169 DNA polymerase III subunits gamma and tau domain III RD13_RS08190 PF01026 TatD related DNase RD13_RS08205 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS08215 PF00005 ABC transporter RD13_RS08220 PF00491 Arginase family RD13_RS08225 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD13_RS08225 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RD13_RS08230 PF00171 Aldehyde dehydrogenase family RD13_RS08235 PF07687 Peptidase dimerisation domain RD13_RS08235 PF01546 Peptidase family M20/M25/M40 RD13_RS08240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD13_RS08240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD13_RS08240 PF00205 Thiamine pyrophosphate enzyme, central domain RD13_RS08250 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD13_RS08250 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD13_RS08260 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD13_RS08260 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS08265 PF07729 FCD domain RD13_RS08265 PF00392 Bacterial regulatory proteins, gntR family RD13_RS08275 PF04343 Protein of unknown function, DUF488 RD13_RS08295 PF01425 Amidase RD13_RS08300 PF07286 Protein of unknown function (DUF1445) RD13_RS08310 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS08310 PF00072 Response regulator receiver domain RD13_RS08310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS08310 PF00989 PAS fold RD13_RS08310 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS08310 PF01627 Hpt domain RD13_RS08315 PF00072 Response regulator receiver domain RD13_RS08315 PF00196 Bacterial regulatory proteins, luxR family RD13_RS08320 PF13332 Hemagglutinin repeat RD13_RS08320 PF05860 haemagglutination activity domain RD13_RS08320 PF05594 Haemagluttinin repeat RD13_RS08320 PF13018 Extended Signal Peptide of Type V secretion system RD13_RS08325 PF16970 Type-1 fimbrial protein, A RD13_RS08330 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RD13_RS08330 PF02753 Pili assembly chaperone PapD, C-terminal domain RD13_RS08335 PF13954 PapC N-terminal domain RD13_RS08335 PF13953 PapC C-terminal domain RD13_RS08335 PF00577 Outer membrane usher protein RD13_RS08340 PF00419 Fimbrial protein RD13_RS08345 PF08479 POTRA domain, ShlB-type RD13_RS08345 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD13_RS08345 PF17287 POTRA domain RD13_RS08360 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS08385 PF03466 LysR substrate binding domain RD13_RS08385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS08395 PF05378 Hydantoinase/oxoprolinase N-terminal region RD13_RS08395 PF01968 Hydantoinase/oxoprolinase RD13_RS08410 PF00924 Mechanosensitive ion channel RD13_RS08410 PF05552 Conserved TM helix RD13_RS08420 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS08425 PF00588 SpoU rRNA Methylase family RD13_RS08430 PF00459 Inositol monophosphatase family RD13_RS08435 PF03471 Transporter associated domain RD13_RS08435 PF03741 Integral membrane protein TerC family RD13_RS08440 PF02673 Bacitracin resistance protein BacA RD13_RS08445 PF00149 Calcineurin-like phosphoesterase RD13_RS08450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RD13_RS08460 PF01406 tRNA synthetases class I (C) catalytic domain RD13_RS08460 PF09190 DALR domain RD13_RS08465 PF02805 Metal binding domain of Ada RD13_RS08465 PF12833 Helix-turn-helix domain RD13_RS08465 PF06029 AlkA N-terminal domain RD13_RS08465 PF00730 HhH-GPD superfamily base excision DNA repair protein RD13_RS08470 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RD13_RS08480 PF09179 TilS substrate binding domain RD13_RS08480 PF01171 PP-loop family RD13_RS08485 PF00696 Amino acid kinase family RD13_RS08485 PF13840 ACT domain RD13_RS08485 PF01842 ACT domain RD13_RS08510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD13_RS08510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD13_RS08515 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD13_RS08515 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD13_RS08520 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD13_RS08525 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS08530 PF00561 alpha/beta hydrolase fold RD13_RS08535 PF01958 Domain of unknown function DUF108 RD13_RS08535 PF03447 Homoserine dehydrogenase, NAD binding domain RD13_RS08550 PF03466 LysR substrate binding domain RD13_RS08550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS08570 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS08575 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS08580 PF00005 ABC transporter RD13_RS08580 PF08402 TOBE domain RD13_RS08590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD13_RS08590 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS08595 PF09339 IclR helix-turn-helix domain RD13_RS08595 PF01614 Bacterial transcriptional regulator RD13_RS08600 PF13380 CoA binding domain RD13_RS08605 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS08610 PF01042 Endoribonuclease L-PSP RD13_RS08635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD13_RS08645 PF00535 Glycosyl transferase family 2 RD13_RS08650 PF14883 Hypothetical glycosyl hydrolase family 13 RD13_RS08650 PF01522 Polysaccharide deacetylase RD13_RS08670 PF12802 MarR family RD13_RS08685 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD13_RS08685 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD13_RS08685 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD13_RS08685 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD13_RS08690 PF00342 Phosphoglucose isomerase RD13_RS08695 PF00132 Bacterial transferase hexapeptide (six repeats) RD13_RS08705 PF02146 Sir2 family RD13_RS08710 PF00459 Inositol monophosphatase family RD13_RS08715 PF00171 Aldehyde dehydrogenase family RD13_RS08720 PF00202 Aminotransferase class-III RD13_RS08725 PF00155 Aminotransferase class I and II RD13_RS08725 PF00392 Bacterial regulatory proteins, gntR family RD13_RS08735 PF13361 UvrD-like helicase C-terminal domain RD13_RS08735 PF00580 UvrD/REP helicase N-terminal domain RD13_RS08740 PF01544 CorA-like Mg2+ transporter protein RD13_RS08750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS08755 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS08760 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS08760 PF12911 N-terminal TM domain of oligopeptide transport permease C RD13_RS08765 PF00005 ABC transporter RD13_RS08765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS08770 PF01047 MarR family RD13_RS08785 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RD13_RS08785 PF08479 POTRA domain, ShlB-type RD13_RS08790 PF03707 Bacterial signalling protein N terminal repeat RD13_RS08790 PF00563 EAL domain RD13_RS08790 PF00990 Diguanylate cyclase, GGDEF domain RD13_RS08820 PF13629 Pilus formation protein N terminal region RD13_RS08820 PF00263 Bacterial type II and III secretion system protein RD13_RS08820 PF04972 BON domain RD13_RS08830 PF00437 Type II/IV secretion system protein RD13_RS08860 PF02954 Bacterial regulatory protein, Fis family RD13_RS08860 PF00072 Response regulator receiver domain RD13_RS08860 PF00158 Sigma-54 interaction domain RD13_RS08875 PF08281 Sigma-70, region 4 RD13_RS08875 PF04542 Sigma-70 region 2 RD13_RS08885 PF00034 Cytochrome c RD13_RS08890 PF08207 Elongation factor P (EF-P) KOW-like domain RD13_RS08890 PF09285 Elongation factor P, C-terminal RD13_RS08890 PF01132 Elongation factor P (EF-P) OB domain RD13_RS08905 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RD13_RS08910 PF00330 Aconitase family (aconitate hydratase) RD13_RS08910 PF00694 Aconitase C-terminal domain RD13_RS08920 PF00593 TonB dependent receptor RD13_RS08920 PF07715 TonB-dependent Receptor Plug Domain RD13_RS08935 PF00691 OmpA family RD13_RS08945 PF11791 Aconitate B N-terminal domain RD13_RS08945 PF00330 Aconitase family (aconitate hydratase) RD13_RS08945 PF06434 Aconitate hydratase 2 N-terminus RD13_RS08970 PF00892 EamA-like transporter family RD13_RS08975 PF01925 Sulfite exporter TauE/SafE RD13_RS08990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS08990 PF03466 LysR substrate binding domain RD13_RS08995 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RD13_RS08995 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RD13_RS09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS09005 PF03466 LysR substrate binding domain RD13_RS09050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD13_RS09050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD13_RS09055 PF01425 Amidase RD13_RS09065 PF00171 Aldehyde dehydrogenase family RD13_RS09080 PF00133 tRNA synthetases class I (I, L, M and V) RD13_RS09080 PF09334 tRNA synthetases class I (M) RD13_RS09080 PF13603 Leucyl-tRNA synthetase, Domain 2 RD13_RS09080 PF08264 Anticodon-binding domain of tRNA RD13_RS09085 PF07690 Major Facilitator Superfamily RD13_RS09090 PF01047 MarR family RD13_RS09110 PF00916 Sulfate permease family RD13_RS09110 PF01740 STAS domain RD13_RS09115 PF00471 Ribosomal protein L33 RD13_RS09120 PF00830 Ribosomal L28 family RD13_RS09125 PF07690 Major Facilitator Superfamily RD13_RS09145 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS09150 PF00005 ABC transporter RD13_RS09150 PF00571 CBS domain RD13_RS09155 PF01361 Tautomerase enzyme RD13_RS09160 PF00108 Thiolase, N-terminal domain RD13_RS09160 PF02803 Thiolase, C-terminal domain RD13_RS09170 PF07729 FCD domain RD13_RS09170 PF00392 Bacterial regulatory proteins, gntR family RD13_RS09180 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS09190 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS09195 PF00080 Copper/zinc superoxide dismutase (SODC) RD13_RS09210 PF00005 ABC transporter RD13_RS09215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS09215 PF03459 TOBE domain RD13_RS09235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD13_RS09235 PF00529 HlyD membrane-fusion protein of T1SS RD13_RS09240 PF00873 AcrB/AcrD/AcrF family RD13_RS09245 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RD13_RS09245 PF02321 Outer membrane efflux protein RD13_RS09250 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RD13_RS09255 PF01648 4'-phosphopantetheinyl transferase superfamily RD13_RS09260 PF00933 Glycosyl hydrolase family 3 N terminal domain RD13_RS09265 PF08459 UvrC Helix-hairpin-helix N-terminal RD13_RS09265 PF02151 UvrB/uvrC motif RD13_RS09265 PF01541 GIY-YIG catalytic domain RD13_RS09270 PF01066 CDP-alcohol phosphatidyltransferase RD13_RS09285 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RD13_RS09285 PF14489 QueF-like protein RD13_RS09290 PF00463 Isocitrate lyase family RD13_RS09305 PF11862 Domain of unknown function (DUF3382) RD13_RS09305 PF02653 Branched-chain amino acid transport system / permease component RD13_RS09310 PF02653 Branched-chain amino acid transport system / permease component RD13_RS09315 PF13458 Periplasmic binding protein RD13_RS09320 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD13_RS09320 PF00355 Rieske [2Fe-2S] domain RD13_RS09325 PF00866 Ring hydroxylating beta subunit RD13_RS09330 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS09340 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS09345 PF02515 CoA-transferase family III RD13_RS09350 PF07859 alpha/beta hydrolase fold RD13_RS09355 PF00501 AMP-binding enzyme RD13_RS09355 PF14535 AMP-binding enzyme C-terminal domain RD13_RS09360 PF00108 Thiolase, N-terminal domain RD13_RS09360 PF02803 Thiolase, C-terminal domain RD13_RS09370 PF12228 Protein of unknown function (DUF3604) RD13_RS09375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS09375 PF03466 LysR substrate binding domain RD13_RS09380 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS09405 PF01152 Bacterial-like globin RD13_RS09440 PF01425 Amidase RD13_RS09445 PF01425 Amidase RD13_RS09455 PF01522 Polysaccharide deacetylase RD13_RS09460 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS09485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD13_RS09485 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS09510 PF03466 LysR substrate binding domain RD13_RS09510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS09520 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS09520 PF01799 [2Fe-2S] binding domain RD13_RS09525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD13_RS09535 PF06719 AraC-type transcriptional regulator N-terminus RD13_RS09535 PF12833 Helix-turn-helix domain RD13_RS09555 PF07690 Major Facilitator Superfamily RD13_RS09570 PF00583 Acetyltransferase (GNAT) family RD13_RS09580 PF00664 ABC transporter transmembrane region RD13_RS09580 PF00005 ABC transporter RD13_RS09590 PF02535 ZIP Zinc transporter RD13_RS09605 PF01740 STAS domain RD13_RS09605 PF00916 Sulfate permease family RD13_RS09625 PF03625 Domain of unknown function DUF302 RD13_RS09625 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD13_RS09635 PF12833 Helix-turn-helix domain RD13_RS09635 PF02805 Metal binding domain of Ada RD13_RS09640 PF07237 Protein of unknown function (DUF1428) RD13_RS09645 PF02567 Phenazine biosynthesis-like protein RD13_RS09650 PF03466 LysR substrate binding domain RD13_RS09650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS09655 PF04286 Protein of unknown function (DUF445) RD13_RS09670 PF00171 Aldehyde dehydrogenase family RD13_RS09675 PF01590 GAF domain RD13_RS09675 PF02954 Bacterial regulatory protein, Fis family RD13_RS09675 PF00158 Sigma-54 interaction domain RD13_RS09690 PF04172 LrgB-like family RD13_RS09695 PF03788 LrgA family RD13_RS09700 PF13649 Methyltransferase domain RD13_RS09710 PF00155 Aminotransferase class I and II RD13_RS09715 PF00202 Aminotransferase class-III RD13_RS09750 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RD13_RS09750 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD13_RS09755 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RD13_RS09755 PF12801 4Fe-4S binding domain RD13_RS09755 PF13746 4Fe-4S dicluster domain RD13_RS09780 PF00005 ABC transporter RD13_RS09785 PF01061 ABC-2 type transporter RD13_RS09790 PF01594 AI-2E family transporter RD13_RS09820 PF03979 Sigma-70 factor, region 1.1 RD13_RS09820 PF04546 Sigma-70, non-essential region RD13_RS09820 PF04545 Sigma-70, region 4 RD13_RS09820 PF04539 Sigma-70 region 3 RD13_RS09820 PF04542 Sigma-70 region 2 RD13_RS09820 PF00140 Sigma-70 factor, region 1.2 RD13_RS09825 PF01807 CHC2 zinc finger RD13_RS09825 PF08275 DNA primase catalytic core, N-terminal domain RD13_RS09825 PF08278 DNA primase DnaG DnaB-binding RD13_RS09825 PF10410 DnaB-helicase binding domain of primase RD13_RS09830 PF01165 Ribosomal protein S21 RD13_RS09835 PF00156 Phosphoribosyl transferase domain RD13_RS09840 PF00709 Adenylosuccinate synthetase RD13_RS09845 PF13393 Histidyl-tRNA synthetase RD13_RS09850 PF01145 SPFH domain / Band 7 family RD13_RS09855 PF12221 Bacterial membrane protein N terminal RD13_RS09855 PF01145 SPFH domain / Band 7 family RD13_RS09860 PF13167 GTP-binding GTPase N-terminal RD13_RS09860 PF16360 GTP-binding GTPase Middle Region RD13_RS09860 PF01926 50S ribosome-binding GTPase RD13_RS09865 PF17209 Hfq protein RD13_RS09870 PF00155 Aminotransferase class I and II RD13_RS09875 PF01926 50S ribosome-binding GTPase RD13_RS09875 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RD13_RS09880 PF13360 PQQ-like domain RD13_RS09885 PF09976 Tetratricopeptide repeat-like domain RD13_RS09890 PF13393 Histidyl-tRNA synthetase RD13_RS09890 PF03129 Anticodon binding domain RD13_RS09895 PF04551 GcpE protein RD13_RS09905 PF04055 Radical SAM superfamily RD13_RS09910 PF00334 Nucleoside diphosphate kinase RD13_RS09915 PF08264 Anticodon-binding domain of tRNA RD13_RS09915 PF10458 Valyl tRNA synthetase tRNA binding arm RD13_RS09915 PF00133 tRNA synthetases class I (I, L, M and V) RD13_RS09925 PF00486 Transcriptional regulatory protein, C terminal RD13_RS09925 PF00072 Response regulator receiver domain RD13_RS09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS09930 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS09930 PF08521 Two-component sensor kinase N-terminal RD13_RS09950 PF00266 Aminotransferase class-V RD13_RS09955 PF01746 tRNA (Guanine-1)-methyltransferase RD13_RS09960 PF01782 RimM N-terminal domain RD13_RS09965 PF00886 Ribosomal protein S16 RD13_RS09975 PF01206 Sulfurtransferase TusA RD13_RS09980 PF02272 DHHA1 domain RD13_RS09980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RD13_RS09980 PF01411 tRNA synthetases class II (A) RD13_RS10025 PF01425 Amidase RD13_RS10030 PF00005 ABC transporter RD13_RS10030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS10035 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS10040 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS10045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS10060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS10060 PF03466 LysR substrate binding domain RD13_RS10065 PF13416 Bacterial extracellular solute-binding protein RD13_RS10070 PF01266 FAD dependent oxidoreductase RD13_RS10075 PF00970 Oxidoreductase FAD-binding domain RD13_RS10075 PF00175 Oxidoreductase NAD-binding domain RD13_RS10075 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS10080 PF02261 Aspartate decarboxylase RD13_RS10095 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD13_RS10100 PF07005 Sugar-binding N-terminal domain RD13_RS10100 PF17042 Nucleotide-binding C-terminal domain RD13_RS10105 PF03812 2-keto-3-deoxygluconate permease RD13_RS10115 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS10125 PF02142 MGS-like domain RD13_RS10130 PF04384 Iron-sulphur cluster assembly RD13_RS10135 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS10140 PF00012 Hsp70 protein RD13_RS10145 PF07743 HSCB C-terminal oligomerisation domain RD13_RS10150 PF01521 Iron-sulphur cluster biosynthesis RD13_RS10155 PF01592 NifU-like N terminal domain RD13_RS10160 PF00266 Aminotransferase class-V RD13_RS10165 PF02082 Transcriptional regulator RD13_RS10170 PF01451 Low molecular weight phosphotyrosine protein phosphatase RD13_RS10175 PF02151 UvrB/uvrC motif RD13_RS10175 PF04851 Type III restriction enzyme, res subunit RD13_RS10175 PF00271 Helicase conserved C-terminal domain RD13_RS10175 PF12344 Ultra-violet resistance protein B RD13_RS10175 PF17757 UvrB interaction domain RD13_RS10180 PF00155 Aminotransferase class I and II RD13_RS10185 PF01726 LexA DNA binding domain RD13_RS10185 PF00717 Peptidase S24-like RD13_RS10190 PF03797 Autotransporter beta-domain RD13_RS10190 PF03212 Pertactin RD13_RS10210 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS10215 PF01144 Coenzyme A transferase RD13_RS10220 PF01144 Coenzyme A transferase RD13_RS10230 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS10230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS10230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS10240 PF00108 Thiolase, N-terminal domain RD13_RS10240 PF02803 Thiolase, C-terminal domain RD13_RS10250 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS10255 PF01575 MaoC like domain RD13_RS10260 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS10265 PF02515 CoA-transferase family III RD13_RS10270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS10270 PF03466 LysR substrate binding domain RD13_RS10275 PF00004 ATPase family associated with various cellular activities (AAA) RD13_RS10275 PF02190 ATP-dependent protease La (LON) substrate-binding domain RD13_RS10275 PF05362 Lon protease (S16) C-terminal proteolytic domain RD13_RS10280 PF06689 ClpX C4-type zinc finger RD13_RS10280 PF10431 C-terminal, D2-small domain, of ClpB protein RD13_RS10280 PF07724 AAA domain (Cdc48 subfamily) RD13_RS10285 PF00574 Clp protease RD13_RS10290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD13_RS10290 PF05697 Bacterial trigger factor protein (TF) RD13_RS10290 PF05698 Bacterial trigger factor protein (TF) C-terminus RD13_RS10295 PF03350 Uncharacterized protein family, UPF0114 RD13_RS10300 PF00313 'Cold-shock' DNA-binding domain RD13_RS10310 PF00313 'Cold-shock' DNA-binding domain RD13_RS10345 PF00132 Bacterial transferase hexapeptide (six repeats) RD13_RS10345 PF14602 Hexapeptide repeat of succinyl-transferase RD13_RS10345 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RD13_RS10350 PF07687 Peptidase dimerisation domain RD13_RS10350 PF01546 Peptidase family M20/M25/M40 RD13_RS10355 PF05175 Methyltransferase small domain RD13_RS10360 PF12848 ABC transporter RD13_RS10360 PF00005 ABC transporter RD13_RS10365 PF07715 TonB-dependent Receptor Plug Domain RD13_RS10370 PF00580 UvrD/REP helicase N-terminal domain RD13_RS10370 PF13361 UvrD-like helicase C-terminal domain RD13_RS10390 PF01029 NusB family RD13_RS10390 PF01189 16S rRNA methyltransferase RsmB/F RD13_RS10395 PF01687 Riboflavin kinase RD13_RS10395 PF06574 FAD synthetase RD13_RS10400 PF08264 Anticodon-binding domain of tRNA RD13_RS10400 PF06827 Zinc finger found in FPG and IleRS RD13_RS10400 PF00133 tRNA synthetases class I (I, L, M and V) RD13_RS10405 PF01252 Signal peptidase (SPase) II RD13_RS10410 PF02441 Flavoprotein RD13_RS10410 PF04127 DNA / pantothenate metabolism flavoprotein RD13_RS10420 PF01037 Lrp/AsnC ligand binding domain RD13_RS10435 PF13406 Transglycosylase SLT domain RD13_RS10440 PF04305 Protein of unknown function (DUF455) RD13_RS10460 PF02875 Mur ligase family, glutamate ligase domain RD13_RS10460 PF08443 RimK-like ATP-grasp domain RD13_RS10460 PF08245 Mur ligase middle domain RD13_RS10465 PF08245 Mur ligase middle domain RD13_RS10465 PF02875 Mur ligase family, glutamate ligase domain RD13_RS10465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD13_RS10470 PF05532 CsbD-like RD13_RS10480 PF04972 BON domain RD13_RS10490 PF00005 ABC transporter RD13_RS10495 PF13472 GDSL-like Lipase/Acylhydrolase family RD13_RS10500 PF13145 PPIC-type PPIASE domain RD13_RS10505 PF03009 Glycerophosphoryl diester phosphodiesterase family RD13_RS10510 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RD13_RS10515 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS10515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD13_RS10520 PF08534 Redoxin RD13_RS10520 PF00462 Glutaredoxin RD13_RS10530 PF00376 MerR family regulatory protein RD13_RS10530 PF09278 MerR, DNA binding RD13_RS10535 PF05958 tRNA (Uracil-5-)-methyltransferase RD13_RS10555 PF01476 LysM domain RD13_RS10555 PF01551 Peptidase family M23 RD13_RS10565 PF01975 Survival protein SurE RD13_RS10570 PF02660 Glycerol-3-phosphate acyltransferase RD13_RS10580 PF00814 Glycoprotease family RD13_RS10585 PF00860 Permease family RD13_RS10595 PF00085 Thioredoxin RD13_RS10600 PF01205 Uncharacterized protein family UPF0029 RD13_RS10610 PF00583 Acetyltransferase (GNAT) family RD13_RS10615 PF12802 MarR family RD13_RS10625 PF00202 Aminotransferase class-III RD13_RS10630 PF16868 NMT1-like family RD13_RS10655 PF03797 Autotransporter beta-domain RD13_RS10665 PF13091 PLD-like domain RD13_RS10665 PF13396 Phospholipase_D-nuclease N-terminal RD13_RS10670 PF01740 STAS domain RD13_RS10675 PF13581 Histidine kinase-like ATPase domain RD13_RS10680 PF01168 Alanine racemase, N-terminal domain RD13_RS10680 PF00842 Alanine racemase, C-terminal domain RD13_RS10690 PF07228 Stage II sporulation protein E (SpoIIE) RD13_RS10690 PF00672 HAMP domain RD13_RS10715 PF04542 Sigma-70 region 2 RD13_RS10715 PF08281 Sigma-70, region 4 RD13_RS10720 PF03958 Bacterial type II/III secretion system short domain RD13_RS10720 PF00263 Bacterial type II and III secretion system protein RD13_RS10730 PF01312 FlhB HrpN YscU SpaS Family RD13_RS10735 PF01311 Bacterial export proteins, family 1 RD13_RS10740 PF01313 Bacterial export proteins, family 3 RD13_RS10745 PF00813 FliP family RD13_RS10750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD13_RS10765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD13_RS10765 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD13_RS10765 PF18269 T3SS EscN ATPase C-terminal domain RD13_RS10770 PF02108 Flagellar assembly protein FliH RD13_RS10780 PF01514 Secretory protein of YscJ/FliF family RD13_RS10845 PF00771 FHIPEP family RD13_RS10875 PF03449 Transcription elongation factor, N-terminal RD13_RS10875 PF01272 Transcription elongation factor, GreA/GreB, C-term RD13_RS10880 PF02203 Tar ligand binding domain homologue RD13_RS10880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD13_RS10880 PF00672 HAMP domain RD13_RS10885 PF00860 Permease family RD13_RS10905 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS10915 PF13419 Haloacid dehalogenase-like hydrolase RD13_RS10920 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS10925 PF08402 TOBE domain RD13_RS10925 PF00005 ABC transporter RD13_RS10930 PF03466 LysR substrate binding domain RD13_RS10930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS10940 PF00581 Rhodanese-like domain RD13_RS10950 PF01435 Peptidase family M48 RD13_RS10955 PF00107 Zinc-binding dehydrogenase RD13_RS10955 PF08240 Alcohol dehydrogenase GroES-like domain RD13_RS10960 PF00892 EamA-like transporter family RD13_RS10970 PF01047 MarR family RD13_RS10980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RD13_RS10980 PF00529 HlyD membrane-fusion protein of T1SS RD13_RS10985 PF07690 Major Facilitator Superfamily RD13_RS10990 PF00180 Isocitrate/isopropylmalate dehydrogenase RD13_RS10995 PF00155 Aminotransferase class I and II RD13_RS10995 PF00392 Bacterial regulatory proteins, gntR family RD13_RS11000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS11005 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS11010 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS11010 PF12911 N-terminal TM domain of oligopeptide transport permease C RD13_RS11015 PF00005 ABC transporter RD13_RS11015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS11025 PF00202 Aminotransferase class-III RD13_RS11030 PF07883 Cupin domain RD13_RS11035 PF00850 Histone deacetylase domain RD13_RS11040 PF07687 Peptidase dimerisation domain RD13_RS11040 PF01546 Peptidase family M20/M25/M40 RD13_RS11050 PF00171 Aldehyde dehydrogenase family RD13_RS11055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD13_RS11060 PF00202 Aminotransferase class-III RD13_RS11065 PF01235 Sodium:alanine symporter family RD13_RS11070 PF05872 Bacterial protein of unknown function (DUF853) RD13_RS11075 PF01709 Transcriptional regulator RD13_RS11080 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RD13_RS11080 PF02844 Phosphoribosylglycinamide synthetase, N domain RD13_RS11080 PF02843 Phosphoribosylglycinamide synthetase, C domain RD13_RS11085 PF01218 Coproporphyrinogen III oxidase RD13_RS11090 PF01467 Cytidylyltransferase-like RD13_RS11100 PF02590 Predicted SPOUT methyltransferase RD13_RS11105 PF02545 Maf-like protein RD13_RS11110 PF03797 Autotransporter beta-domain RD13_RS11110 PF03212 Pertactin RD13_RS11150 PF00575 S1 RNA binding domain RD13_RS11150 PF10150 Ribonuclease E/G family RD13_RS11155 PF01842 ACT domain RD13_RS11155 PF00800 Prephenate dehydratase RD13_RS11165 PF07690 Major Facilitator Superfamily RD13_RS11170 PF00664 ABC transporter transmembrane region RD13_RS11170 PF00005 ABC transporter RD13_RS11175 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RD13_RS11185 PF03692 Putative zinc- or iron-chelating domain RD13_RS11200 PF00884 Sulfatase RD13_RS11205 PF00534 Glycosyl transferases group 1 RD13_RS11205 PF13439 Glycosyltransferase Family 4 RD13_RS11210 PF00535 Glycosyl transferase family 2 RD13_RS11215 PF01522 Polysaccharide deacetylase RD13_RS11220 PF00534 Glycosyl transferases group 1 RD13_RS11220 PF13439 Glycosyltransferase Family 4 RD13_RS11225 PF01336 OB-fold nucleic acid binding domain RD13_RS11225 PF07733 Bacterial DNA polymerase III alpha NTPase domain RD13_RS11225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RD13_RS11225 PF14579 Helix-hairpin-helix motif RD13_RS11225 PF02811 PHP domain RD13_RS11235 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RD13_RS11235 PF00271 Helicase conserved C-terminal domain RD13_RS11235 PF04408 Helicase associated domain (HA2) RD13_RS11235 PF11898 Domain of unknown function (DUF3418) RD13_RS11235 PF00270 DEAD/DEAH box helicase RD13_RS11240 PF00583 Acetyltransferase (GNAT) family RD13_RS11240 PF00696 Amino acid kinase family RD13_RS11245 PF04362 Bacterial Fe(2+) trafficking RD13_RS11250 PF05506 Domain of unknown function (DUF756) RD13_RS11250 PF04185 Phosphoesterase family RD13_RS11255 PF01895 PhoU domain RD13_RS11260 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RD13_RS11265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS11265 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS11265 PF18158 Adaptive response protein AidB N-terminal domain RD13_RS11270 PF02646 RmuC family RD13_RS11280 PF02245 Methylpurine-DNA glycosylase (MPG) RD13_RS11290 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS11295 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS11300 PF08402 TOBE domain RD13_RS11300 PF00005 ABC transporter RD13_RS11305 PF13416 Bacterial extracellular solute-binding protein RD13_RS11325 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS11335 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD13_RS11335 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RD13_RS11355 PF00285 Citrate synthase, C-terminal domain RD13_RS11360 PF03937 Flavinator of succinate dehydrogenase RD13_RS11365 PF13085 2Fe-2S iron-sulfur cluster binding domain RD13_RS11370 PF00890 FAD binding domain RD13_RS11370 PF02910 Fumarate reductase flavoprotein C-term RD13_RS11375 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD13_RS11380 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RD13_RS11385 PF00392 Bacterial regulatory proteins, gntR family RD13_RS11385 PF07702 UTRA domain RD13_RS11390 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RD13_RS11390 PF00056 lactate/malate dehydrogenase, NAD binding domain RD13_RS11400 PF00285 Citrate synthase, C-terminal domain RD13_RS11405 PF00694 Aconitase C-terminal domain RD13_RS11405 PF00330 Aconitase family (aconitate hydratase) RD13_RS11410 PF04303 PrpF protein RD13_RS11415 PF03972 MmgE/PrpD family RD13_RS11420 PF03653 Uncharacterised protein family (UPF0093) RD13_RS11425 PF02926 THUMP domain RD13_RS11425 PF01170 Putative RNA methylase family UPF0020 RD13_RS11445 PF16177 Acetyl-coenzyme A synthetase N-terminus RD13_RS11445 PF13193 AMP-binding enzyme C-terminal domain RD13_RS11445 PF00501 AMP-binding enzyme RD13_RS11455 PF01430 Hsp33 protein RD13_RS11480 PF00211 Adenylate and Guanylate cyclase catalytic domain RD13_RS11485 PF04977 Septum formation initiator RD13_RS11490 PF03952 Enolase, N-terminal domain RD13_RS11490 PF00113 Enolase, C-terminal TIM barrel domain RD13_RS11500 PF00793 DAHP synthetase I family RD13_RS11505 PF00117 Glutamine amidotransferase class-I RD13_RS11505 PF06418 CTP synthase N-terminus RD13_RS11515 PF01321 Creatinase/Prolidase N-terminal domain RD13_RS11515 PF00557 Metallopeptidase family M24 RD13_RS11525 PF03576 Peptidase family S58 RD13_RS11530 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS11530 PF12911 N-terminal TM domain of oligopeptide transport permease C RD13_RS11535 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS11540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS11545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS11545 PF00005 ABC transporter RD13_RS11550 PF01112 Asparaginase RD13_RS11560 PF01144 Coenzyme A transferase RD13_RS11580 PF16363 GDP-mannose 4,6 dehydratase RD13_RS11595 PF01212 Beta-eliminating lyase RD13_RS11600 PF00892 EamA-like transporter family RD13_RS11605 PF00501 AMP-binding enzyme RD13_RS11605 PF13193 AMP-binding enzyme C-terminal domain RD13_RS11605 PF16177 Acetyl-coenzyme A synthetase N-terminus RD13_RS11615 PF03928 Haem-degrading RD13_RS11620 PF13193 AMP-binding enzyme C-terminal domain RD13_RS11620 PF16177 Acetyl-coenzyme A synthetase N-terminus RD13_RS11620 PF00501 AMP-binding enzyme RD13_RS11625 PF00877 NlpC/P60 family RD13_RS11640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS11640 PF03466 LysR substrate binding domain RD13_RS11645 PF00171 Aldehyde dehydrogenase family RD13_RS11655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS11655 PF03466 LysR substrate binding domain RD13_RS11665 PF00883 Cytosol aminopeptidase family, catalytic domain RD13_RS11665 PF02789 Cytosol aminopeptidase family, N-terminal domain RD13_RS11670 PF04364 DNA polymerase III chi subunit, HolC RD13_RS11680 PF01027 Inhibitor of apoptosis-promoting Bax1 RD13_RS11685 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS11700 PF00291 Pyridoxal-phosphate dependent enzyme RD13_RS11710 PF11967 Recombination protein O N terminal RD13_RS11710 PF02565 Recombination protein O C terminal RD13_RS11715 PF07650 KH domain RD13_RS11715 PF01926 50S ribosome-binding GTPase RD13_RS11720 PF14622 Ribonuclease-III-like RD13_RS11720 PF00035 Double-stranded RNA binding motif RD13_RS11725 PF10502 Signal peptidase, peptidase S26 RD13_RS11730 PF00009 Elongation factor Tu GTP binding domain RD13_RS11730 PF00679 Elongation factor G C-terminus RD13_RS11730 PF06421 GTP-binding protein LepA C-terminus RD13_RS11730 PF03144 Elongation factor Tu domain 2 RD13_RS11735 PF13180 PDZ domain RD13_RS11750 PF08281 Sigma-70, region 4 RD13_RS11750 PF04542 Sigma-70 region 2 RD13_RS11760 PF02801 Beta-ketoacyl synthase, C-terminal domain RD13_RS11760 PF00109 Beta-ketoacyl synthase, N-terminal domain RD13_RS11765 PF00550 Phosphopantetheine attachment site RD13_RS11775 PF00698 Acyl transferase domain RD13_RS11780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD13_RS11780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD13_RS11785 PF02504 Fatty acid synthesis protein RD13_RS11790 PF01783 Ribosomal L32p protein family RD13_RS11795 PF02620 Large ribosomal RNA subunit accumulation protein YceD RD13_RS11800 PF02545 Maf-like protein RD13_RS11810 PF01510 N-acetylmuramoyl-L-alanine amidase RD13_RS11815 PF12805 FUSC-like inner membrane protein yccS RD13_RS11825 PF03883 Peroxide stress protein YaaA RD13_RS11840 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RD13_RS11845 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD13_RS11855 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS11860 PF01416 tRNA pseudouridine synthase RD13_RS11870 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD13_RS11870 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD13_RS11875 PF00180 Isocitrate/isopropylmalate dehydrogenase RD13_RS11880 PF00694 Aconitase C-terminal domain RD13_RS11885 PF00330 Aconitase family (aconitate hydratase) RD13_RS11890 PF12849 PBP superfamily domain RD13_RS11895 PF00005 ABC transporter RD13_RS11900 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS11925 PF13247 4Fe-4S dicluster domain RD13_RS11930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RD13_RS11930 PF01568 Molydopterin dinucleotide binding domain RD13_RS11930 PF00384 Molybdopterin oxidoreductase RD13_RS11960 PF10609 NUBPL iron-transfer P-loop NTPase RD13_RS11965 PF12804 MobA-like NTP transferase domain RD13_RS11970 PF00994 Probable molybdopterin binding domain RD13_RS11970 PF03453 MoeA N-terminal region (domain I and II) RD13_RS11970 PF03454 MoeA C-terminal region (domain IV) RD13_RS11975 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RD13_RS11980 PF01435 Peptidase family M48 RD13_RS11985 PF01264 Chorismate synthase RD13_RS11990 PF08447 PAS fold RD13_RS11990 PF00563 EAL domain RD13_RS11990 PF08448 PAS fold RD13_RS11990 PF00990 Diguanylate cyclase, GGDEF domain RD13_RS12005 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS12010 PF08402 TOBE domain RD13_RS12010 PF00005 ABC transporter RD13_RS12015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS12015 PF03466 LysR substrate binding domain RD13_RS12020 PF00300 Histidine phosphatase superfamily (branch 1) RD13_RS12030 PF02142 MGS-like domain RD13_RS12030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD13_RS12030 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RD13_RS12035 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RD13_RS12035 PF00117 Glutamine amidotransferase class-I RD13_RS12040 PF00923 Transaldolase/Fructose-6-phosphate aldolase RD13_RS12065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD13_RS12065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD13_RS12070 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS12075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS12075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS12075 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS12080 PF03658 RnfH family Ubiquitin RD13_RS12085 PF03364 Polyketide cyclase / dehydrase and lipid transport RD13_RS12095 PF01668 SmpB protein RD13_RS12100 PF00990 Diguanylate cyclase, GGDEF domain RD13_RS12100 PF08448 PAS fold RD13_RS12105 PF01145 SPFH domain / Band 7 family RD13_RS12105 PF16200 C-terminal region of band_7 RD13_RS12120 PF00117 Glutamine amidotransferase class-I RD13_RS12120 PF00958 GMP synthase C terminal domain RD13_RS12125 PF00391 PEP-utilising enzyme, mobile domain RD13_RS12125 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RD13_RS12125 PF02896 PEP-utilising enzyme, TIM barrel domain RD13_RS12130 PF03618 Kinase/pyrophosphorylase RD13_RS12135 PF08032 RNA 2'-O ribose methyltransferase substrate binding RD13_RS12135 PF00588 SpoU rRNA Methylase family RD13_RS12140 PF01351 Ribonuclease HII RD13_RS12145 PF02684 Lipid-A-disaccharide synthetase RD13_RS12150 PF00132 Bacterial transferase hexapeptide (six repeats) RD13_RS12150 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RD13_RS12155 PF07977 FabA-like domain RD13_RS12160 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RD13_RS12160 PF00132 Bacterial transferase hexapeptide (six repeats) RD13_RS12165 PF03938 Outer membrane protein (OmpH-like) RD13_RS12170 PF01103 Surface antigen RD13_RS12170 PF07244 Surface antigen variable number repeat RD13_RS12175 PF17820 PDZ domain RD13_RS12175 PF02163 Peptidase family M50 RD13_RS12180 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RD13_RS12180 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RD13_RS12180 PF13288 DXP reductoisomerase C-terminal domain RD13_RS12190 PF01255 Putative undecaprenyl diphosphate synthase RD13_RS12195 PF01765 Ribosome recycling factor RD13_RS12200 PF00696 Amino acid kinase family RD13_RS12205 PF00889 Elongation factor TS RD13_RS12210 PF00318 Ribosomal protein S2 RD13_RS12215 PF00557 Metallopeptidase family M24 RD13_RS12220 PF01966 HD domain RD13_RS12220 PF08335 GlnD PII-uridylyltransferase RD13_RS12220 PF01909 Nucleotidyltransferase domain RD13_RS12235 PF00156 Phosphoribosyl transferase domain RD13_RS12250 PF02875 Mur ligase family, glutamate ligase domain RD13_RS12250 PF08245 Mur ligase middle domain RD13_RS12260 PF02465 Flagellar hook-associated protein 2 N-terminus RD13_RS12260 PF07195 Flagellar hook-associated protein 2 C-terminus RD13_RS12260 PF07196 Flagellin hook IN motif RD13_RS12265 PF02561 Flagellar protein FliS RD13_RS12285 PF01312 FlhB HrpN YscU SpaS Family RD13_RS12295 PF02049 Flagellar hook-basal body complex protein FliE RD13_RS12300 PF01514 Secretory protein of YscJ/FliF family RD13_RS12300 PF08345 Flagellar M-ring protein C-terminal RD13_RS12305 PF01706 FliG C-terminal domain RD13_RS12305 PF14842 FliG N-terminal domain RD13_RS12305 PF14841 FliG middle domain RD13_RS12315 PF18269 T3SS EscN ATPase C-terminal domain RD13_RS12315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD13_RS12340 PF03748 Flagellar basal body-associated protein FliL RD13_RS12345 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD13_RS12345 PF02154 Flagellar motor switch protein FliM RD13_RS12350 PF16973 Flagellar motor switch protein FliN N-terminal RD13_RS12350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RD13_RS12355 PF04347 Flagellar biosynthesis protein, FliO RD13_RS12360 PF00813 FliP family RD13_RS12365 PF01313 Bacterial export proteins, family 3 RD13_RS12370 PF01311 Bacterial export proteins, family 1 RD13_RS12380 PF08447 PAS fold RD13_RS12380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD13_RS12385 PF02203 Tar ligand binding domain homologue RD13_RS12385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD13_RS12385 PF00672 HAMP domain RD13_RS12390 PF00672 HAMP domain RD13_RS12390 PF02203 Tar ligand binding domain homologue RD13_RS12390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RD13_RS12395 PF00669 Bacterial flagellin N-terminal helical region RD13_RS12400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD13_RS12400 PF00460 Flagella basal body rod protein RD13_RS12405 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RD13_RS12405 PF10135 Rod binding protein RD13_RS12410 PF02119 Flagellar P-ring protein RD13_RS12415 PF02107 Flagellar L-ring protein RD13_RS12420 PF00460 Flagella basal body rod protein RD13_RS12420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD13_RS12425 PF00460 Flagella basal body rod protein RD13_RS12425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD13_RS12430 PF00460 Flagella basal body rod protein RD13_RS12430 PF07559 Flagellar basal body protein FlaE RD13_RS12430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD13_RS12435 PF13861 FlgD Tudor-like domain RD13_RS12435 PF03963 Flagellar hook capping protein - N-terminal region RD13_RS12435 PF13860 FlgD Ig-like domain RD13_RS12440 PF00460 Flagella basal body rod protein RD13_RS12440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RD13_RS12445 PF00460 Flagella basal body rod protein RD13_RS12455 PF04316 Anti-sigma-28 factor, FlgM RD13_RS12465 PF00448 SRP54-type protein, GTPase domain RD13_RS12475 PF01312 FlhB HrpN YscU SpaS Family RD13_RS12485 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS12490 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS12495 PF00005 ABC transporter RD13_RS12505 PF08546 Ketopantoate reductase PanE/ApbA C terminal RD13_RS12505 PF02558 Ketopantoate reductase PanE/ApbA RD13_RS12510 PF13378 Enolase C-terminal domain-like RD13_RS12515 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS12525 PF00694 Aconitase C-terminal domain RD13_RS12530 PF00356 Bacterial regulatory proteins, lacI family RD13_RS12535 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS12540 PF02515 CoA-transferase family III RD13_RS12550 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS12555 PF13607 Succinyl-CoA ligase like flavodoxin domain RD13_RS12555 PF13380 CoA binding domain RD13_RS12560 PF00392 Bacterial regulatory proteins, gntR family RD13_RS12560 PF07729 FCD domain RD13_RS12565 PF03328 HpcH/HpaI aldolase/citrate lyase family RD13_RS12575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS12575 PF03466 LysR substrate binding domain RD13_RS12585 PF12951 Passenger-associated-transport-repeat RD13_RS12595 PF03551 Transcriptional regulator PadR-like family RD13_RS12600 PF03372 Endonuclease/Exonuclease/phosphatase family RD13_RS12605 PF13091 PLD-like domain RD13_RS12620 PF03706 Lysylphosphatidylglycerol synthase TM region RD13_RS12650 PF11896 Domain of unknown function (DUF3416) RD13_RS12650 PF00128 Alpha amylase, catalytic domain RD13_RS12655 PF16657 Maltogenic Amylase, C-terminal domain RD13_RS12655 PF00128 Alpha amylase, catalytic domain RD13_RS12660 PF00128 Alpha amylase, catalytic domain RD13_RS12660 PF02806 Alpha amylase, C-terminal all-beta domain RD13_RS12660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD13_RS12665 PF00128 Alpha amylase, catalytic domain RD13_RS12665 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD13_RS12670 PF11941 Domain of unknown function (DUF3459) RD13_RS12670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RD13_RS12670 PF00128 Alpha amylase, catalytic domain RD13_RS12680 PF02446 4-alpha-glucanotransferase RD13_RS12685 PF00128 Alpha amylase, catalytic domain RD13_RS12695 PF08543 Phosphomethylpyrimidine kinase RD13_RS12700 PF01168 Alanine racemase, N-terminal domain RD13_RS12705 PF00392 Bacterial regulatory proteins, gntR family RD13_RS12705 PF00155 Aminotransferase class I and II RD13_RS12720 PF00582 Universal stress protein family RD13_RS12725 PF00248 Aldo/keto reductase family RD13_RS12735 PF01447 Thermolysin metallopeptidase, catalytic domain RD13_RS12735 PF02868 Thermolysin metallopeptidase, alpha-helical domain RD13_RS12735 PF16485 Protealysin propeptide RD13_RS12740 PF07681 DoxX RD13_RS12760 PF00578 AhpC/TSA family RD13_RS12765 PF03960 ArsC family RD13_RS12770 PF02515 CoA-transferase family III RD13_RS12790 PF00255 Glutathione peroxidase RD13_RS12795 PF00043 Glutathione S-transferase, C-terminal domain RD13_RS12795 PF02798 Glutathione S-transferase, N-terminal domain RD13_RS12810 PF03099 Biotin/lipoate A/B protein ligase family RD13_RS12810 PF10437 Bacterial lipoate protein ligase C-terminus RD13_RS12825 PF02666 Phosphatidylserine decarboxylase RD13_RS12830 PF01070 FMN-dependent dehydrogenase RD13_RS12835 PF03180 NLPA lipoprotein RD13_RS12840 PF08808 RES domain RD13_RS12850 PF04241 Protein of unknown function (DUF423) RD13_RS12870 PF13458 Periplasmic binding protein RD13_RS12875 PF17912 MalK OB fold domain RD13_RS12875 PF00005 ABC transporter RD13_RS12880 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS12885 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS12890 PF13416 Bacterial extracellular solute-binding protein RD13_RS12895 PF03807 NADP oxidoreductase coenzyme F420-dependent RD13_RS12895 PF14748 Pyrroline-5-carboxylate reductase dimerisation RD13_RS12900 PF02592 Putative vitamin uptake transporter RD13_RS12910 PF13458 Periplasmic binding protein RD13_RS12915 PF02653 Branched-chain amino acid transport system / permease component RD13_RS12920 PF11862 Domain of unknown function (DUF3382) RD13_RS12920 PF02653 Branched-chain amino acid transport system / permease component RD13_RS12925 PF00005 ABC transporter RD13_RS12925 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD13_RS12930 PF00005 ABC transporter RD13_RS12935 PF01177 Asp/Glu/Hydantoin racemase RD13_RS12950 PF00892 EamA-like transporter family RD13_RS12960 PF04235 Protein of unknown function (DUF418) RD13_RS12965 PF00521 DNA gyrase/topoisomerase IV, subunit A RD13_RS12975 PF00204 DNA gyrase B RD13_RS12975 PF00986 DNA gyrase B subunit, carboxyl terminus RD13_RS12975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS12975 PF01751 Toprim domain RD13_RS12980 PF00085 Thioredoxin RD13_RS12985 PF07497 Rho termination factor, RNA-binding domain RD13_RS12985 PF07498 Rho termination factor, N-terminal domain RD13_RS12985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD13_RS12995 PF03710 Glutamate-ammonia ligase adenylyltransferase RD13_RS12995 PF08335 GlnD PII-uridylyltransferase RD13_RS13000 PF02677 Epoxyqueuosine reductase QueH RD13_RS13005 PF03315 Serine dehydratase beta chain RD13_RS13005 PF03313 Serine dehydratase alpha chain RD13_RS13010 PF02690 Na+/Pi-cotransporter RD13_RS13015 PF01738 Dienelactone hydrolase family RD13_RS13025 PF01612 3'-5' exonuclease RD13_RS13025 PF00476 DNA polymerase family A RD13_RS13025 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RD13_RS13025 PF01367 5'-3' exonuclease, C-terminal SAM fold RD13_RS13030 PF03641 Possible lysine decarboxylase RD13_RS13045 PF00009 Elongation factor Tu GTP binding domain RD13_RS13045 PF00679 Elongation factor G C-terminus RD13_RS13045 PF03144 Elongation factor Tu domain 2 RD13_RS13050 PF01509 TruB family pseudouridylate synthase (N terminal domain) RD13_RS13050 PF16198 tRNA pseudouridylate synthase B C-terminal domain RD13_RS13055 PF02033 Ribosome-binding factor A RD13_RS13060 PF11987 Translation-initiation factor 2 RD13_RS13060 PF04760 Translation initiation factor IF-2, N-terminal region RD13_RS13060 PF08364 Bacterial translation initiation factor IF-2 associated region RD13_RS13060 PF00009 Elongation factor Tu GTP binding domain RD13_RS13065 PF08529 NusA N-terminal domain RD13_RS13065 PF13184 NusA-like KH domain RD13_RS13070 PF17384 RimP C-terminal SH3 domain RD13_RS13070 PF02576 RimP N-terminal domain RD13_RS13075 PF01479 S4 domain RD13_RS13075 PF00849 RNA pseudouridylate synthase RD13_RS13080 PF04079 Segregation and condensation complex subunit ScpB RD13_RS13090 PF03466 LysR substrate binding domain RD13_RS13090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS13095 PF00881 Nitroreductase family RD13_RS13100 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD13_RS13100 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD13_RS13120 PF02798 Glutathione S-transferase, N-terminal domain RD13_RS13120 PF14497 Glutathione S-transferase, C-terminal domain RD13_RS13125 PF02401 LytB protein RD13_RS13130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RD13_RS13135 PF04002 RadC-like JAB domain RD13_RS13140 PF04199 Putative cyclase RD13_RS13145 PF03301 Tryptophan 2,3-dioxygenase RD13_RS13150 PF01197 Ribosomal protein L31 RD13_RS13160 PF01554 MatE RD13_RS13175 PF18073 Rubredoxin metal binding domain RD13_RS13180 PF12034 Domain of unknown function (DUF3520) RD13_RS13180 PF00092 von Willebrand factor type A domain RD13_RS13180 PF12450 von Willebrand factor RD13_RS13185 PF04542 Sigma-70 region 2 RD13_RS13185 PF04545 Sigma-70, region 4 RD13_RS13205 PF00842 Alanine racemase, C-terminal domain RD13_RS13205 PF01168 Alanine racemase, N-terminal domain RD13_RS13220 PF01593 Flavin containing amine oxidoreductase RD13_RS13220 PF01593 Flavin containing amine oxidoreductase RD13_RS13225 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RD13_RS13235 PF01061 ABC-2 type transporter RD13_RS13240 PF00005 ABC transporter RD13_RS13260 PF02424 ApbE family RD13_RS13265 PF00175 Oxidoreductase NAD-binding domain RD13_RS13265 PF00667 FAD binding domain RD13_RS13265 PF00258 Flavodoxin RD13_RS13275 PF07969 Amidohydrolase family RD13_RS13280 PF03466 LysR substrate binding domain RD13_RS13280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS13290 PF09370 Phosphoenolpyruvate hydrolase-like RD13_RS13305 PF03797 Autotransporter beta-domain RD13_RS13305 PF03212 Pertactin RD13_RS13310 PF03797 Autotransporter beta-domain RD13_RS13310 PF03212 Pertactin RD13_RS13320 PF02861 Clp amino terminal domain, pathogenicity island component RD13_RS13320 PF10431 C-terminal, D2-small domain, of ClpB protein RD13_RS13320 PF17871 AAA lid domain RD13_RS13320 PF07724 AAA domain (Cdc48 subfamily) RD13_RS13320 PF00004 ATPase family associated with various cellular activities (AAA) RD13_RS13325 PF00027 Cyclic nucleotide-binding domain RD13_RS13325 PF13545 Crp-like helix-turn-helix domain RD13_RS13340 PF00293 NUDIX domain RD13_RS13345 PF12843 Putative quorum-sensing-regulated virulence factor RD13_RS13355 PF08281 Sigma-70, region 4 RD13_RS13355 PF12680 SnoaL-like domain RD13_RS13355 PF04542 Sigma-70 region 2 RD13_RS13360 PF02627 Carboxymuconolactone decarboxylase family RD13_RS13390 PF00155 Aminotransferase class I and II RD13_RS13395 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS13400 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS13405 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS13410 PF00005 ABC transporter RD13_RS13430 PF16970 Type-1 fimbrial protein, A RD13_RS13435 PF14535 AMP-binding enzyme C-terminal domain RD13_RS13435 PF00501 AMP-binding enzyme RD13_RS13440 PF03061 Thioesterase superfamily RD13_RS13445 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS13450 PF00171 Aldehyde dehydrogenase family RD13_RS13465 PF00970 Oxidoreductase FAD-binding domain RD13_RS13465 PF00175 Oxidoreductase NAD-binding domain RD13_RS13465 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS13470 PF01883 Iron-sulfur cluster assembly protein RD13_RS13475 PF05138 Phenylacetic acid catabolic protein RD13_RS13480 PF06243 Phenylacetic acid degradation B RD13_RS13485 PF05138 Phenylacetic acid catabolic protein RD13_RS13490 PF07848 PaaX-like protein RD13_RS13490 PF08223 PaaX-like protein C-terminal domain RD13_RS13495 PF03853 YjeF-related protein N-terminus RD13_RS13500 PF00929 Exonuclease RD13_RS13505 PF01435 Peptidase family M48 RD13_RS13510 PF03193 RsgA GTPase RD13_RS13515 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS13515 PF12911 N-terminal TM domain of oligopeptide transport permease C RD13_RS13520 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS13525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS13535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS13535 PF03466 LysR substrate binding domain RD13_RS13560 PF00543 Nitrogen regulatory protein P-II RD13_RS13565 PF02540 NAD synthase RD13_RS13565 PF00795 Carbon-nitrogen hydrolase RD13_RS13570 PF00924 Mechanosensitive ion channel RD13_RS13575 PF14698 Argininosuccinate lyase C-terminal RD13_RS13575 PF00206 Lyase RD13_RS13595 PF04055 Radical SAM superfamily RD13_RS13595 PF06463 Molybdenum Cofactor Synthesis C RD13_RS13600 PF03454 MoeA C-terminal region (domain IV) RD13_RS13600 PF00994 Probable molybdopterin binding domain RD13_RS13600 PF03453 MoeA N-terminal region (domain I and II) RD13_RS13605 PF00994 Probable molybdopterin binding domain RD13_RS13610 PF02391 MoaE protein RD13_RS13620 PF01967 MoaC family RD13_RS13630 PF01738 Dienelactone hydrolase family RD13_RS13640 PF08534 Redoxin RD13_RS13655 PF04055 Radical SAM superfamily RD13_RS13655 PF06968 Biotin and Thiamin Synthesis associated domain RD13_RS13675 PF00403 Heavy-metal-associated domain RD13_RS13680 PF13411 MerR HTH family regulatory protein RD13_RS13700 PF02104 SURF1 family RD13_RS13705 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD13_RS13710 PF00510 Cytochrome c oxidase subunit III RD13_RS13715 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD13_RS13725 PF07690 Major Facilitator Superfamily RD13_RS13725 PF00083 Sugar (and other) transporter RD13_RS13740 PF04380 Membrane fusogenic activity RD13_RS13745 PF00543 Nitrogen regulatory protein P-II RD13_RS13755 PF03797 Autotransporter beta-domain RD13_RS13755 PF03212 Pertactin RD13_RS13765 PF00440 Bacterial regulatory proteins, tetR family RD13_RS13770 PF07690 Major Facilitator Superfamily RD13_RS13775 PF00005 ABC transporter RD13_RS13780 PF00005 ABC transporter RD13_RS13780 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD13_RS13785 PF11862 Domain of unknown function (DUF3382) RD13_RS13785 PF02653 Branched-chain amino acid transport system / permease component RD13_RS13790 PF02653 Branched-chain amino acid transport system / permease component RD13_RS13795 PF13458 Periplasmic binding protein RD13_RS13805 PF00171 Aldehyde dehydrogenase family RD13_RS13805 PF01619 Proline dehydrogenase RD13_RS13805 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RD13_RS13805 PF14850 DNA-binding domain of Proline dehydrogenase RD13_RS13815 PF02470 MlaD protein RD13_RS13820 PF04403 Paraquat-inducible protein A RD13_RS13825 PF10431 C-terminal, D2-small domain, of ClpB protein RD13_RS13825 PF17871 AAA lid domain RD13_RS13825 PF02861 Clp amino terminal domain, pathogenicity island component RD13_RS13825 PF00004 ATPase family associated with various cellular activities (AAA) RD13_RS13825 PF07724 AAA domain (Cdc48 subfamily) RD13_RS13830 PF06832 Penicillin-Binding Protein C-terminus Family RD13_RS13830 PF00905 Penicillin binding protein transpeptidase domain RD13_RS13830 PF00912 Transglycosylase RD13_RS13835 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RD13_RS13835 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RD13_RS13835 PF01835 MG2 domain RD13_RS13835 PF17962 Bacterial macroglobulin domain 6 RD13_RS13835 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RD13_RS13835 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RD13_RS13835 PF07703 Alpha-2-macroglobulin bait region domain RD13_RS13835 PF00207 Alpha-2-macroglobulin family RD13_RS13840 PF02617 ATP-dependent Clp protease adaptor protein ClpS RD13_RS13845 PF00313 'Cold-shock' DNA-binding domain RD13_RS13855 PF02803 Thiolase, C-terminal domain RD13_RS13855 PF00108 Thiolase, N-terminal domain RD13_RS13860 PF00654 Voltage gated chloride channel RD13_RS13865 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RD13_RS13865 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RD13_RS13870 PF02601 Exonuclease VII, large subunit RD13_RS13870 PF13742 OB-fold nucleic acid binding domain RD13_RS13880 PF01618 MotA/TolQ/ExbB proton channel family RD13_RS13885 PF02472 Biopolymer transport protein ExbD/TolR RD13_RS13890 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RD13_RS13895 PF03966 Trm112p-like protein RD13_RS13900 PF02348 Cytidylyltransferase RD13_RS13905 PF05191 Adenylate kinase, active site lid RD13_RS13910 PF00106 short chain dehydrogenase RD13_RS13915 PF03023 Lipid II flippase MurJ RD13_RS13925 PF01649 Ribosomal protein S20 RD13_RS13930 PF03328 HpcH/HpaI aldolase/citrate lyase family RD13_RS13945 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS13955 PF02615 Malate/L-lactate dehydrogenase RD13_RS13970 PF00291 Pyridoxal-phosphate dependent enzyme RD13_RS13970 PF14821 Threonine synthase N terminus RD13_RS13975 PF03447 Homoserine dehydrogenase, NAD binding domain RD13_RS13975 PF01842 ACT domain RD13_RS13975 PF00742 Homoserine dehydrogenase RD13_RS13980 PF00155 Aminotransferase class I and II RD13_RS13985 PF04430 Protein of unknown function (DUF498/DUF598) RD13_RS13990 PF00578 AhpC/TSA family RD13_RS13995 PF02562 PhoH-like protein RD13_RS13995 PF13638 PIN domain RD13_RS14000 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RD13_RS14005 PF13593 SBF-like CPA transporter family (DUF4137) RD13_RS14010 PF03796 DnaB-like helicase C terminal domain RD13_RS14010 PF00772 DnaB-like helicase N terminal domain RD13_RS14020 PF03948 Ribosomal protein L9, C-terminal domain RD13_RS14020 PF01281 Ribosomal protein L9, N-terminal domain RD13_RS14025 PF01084 Ribosomal protein S18 RD13_RS14035 PF01250 Ribosomal protein S6 RD13_RS14040 PF02649 Type I GTP cyclohydrolase folE2 RD13_RS14045 PF02780 Transketolase, C-terminal domain RD13_RS14045 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RD13_RS14045 PF02779 Transketolase, pyrimidine binding domain RD13_RS14050 PF00348 Polyprenyl synthetase RD13_RS14055 PF02609 Exonuclease VII small subunit RD13_RS14065 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS14085 PF00571 CBS domain RD13_RS14085 PF01769 Divalent cation transporter RD13_RS14085 PF03448 MgtE intracellular N domain RD13_RS14090 PF03061 Thioesterase superfamily RD13_RS14095 PF03601 Conserved hypothetical protein 698 RD13_RS14100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS14100 PF03466 LysR substrate binding domain RD13_RS14105 PF01546 Peptidase family M20/M25/M40 RD13_RS14105 PF07687 Peptidase dimerisation domain RD13_RS14110 PF13193 AMP-binding enzyme C-terminal domain RD13_RS14110 PF00501 AMP-binding enzyme RD13_RS14120 PF00459 Inositol monophosphatase family RD13_RS14130 PF01055 Glycosyl hydrolases family 31 RD13_RS14130 PF13802 Galactose mutarotase-like RD13_RS14135 PF00005 ABC transporter RD13_RS14135 PF09383 NIL domain RD13_RS14140 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS14145 PF03180 NLPA lipoprotein RD13_RS14160 PF00465 Iron-containing alcohol dehydrogenase RD13_RS14185 PF00392 Bacterial regulatory proteins, gntR family RD13_RS14185 PF07729 FCD domain RD13_RS14190 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS14210 PF14785 Maltose transport system permease protein MalF P2 domain RD13_RS14210 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS14215 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS14220 PF00005 ABC transporter RD13_RS14220 PF08402 TOBE domain RD13_RS14225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD13_RS14225 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS14235 PF01547 Bacterial extracellular solute-binding protein RD13_RS14250 PF00376 MerR family regulatory protein RD13_RS14250 PF09278 MerR, DNA binding RD13_RS14255 PF03352 Methyladenine glycosylase RD13_RS14260 PF05170 AsmA family RD13_RS14270 PF00440 Bacterial regulatory proteins, tetR family RD13_RS14315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS14315 PF03466 LysR substrate binding domain RD13_RS14320 PF02548 Ketopantoate hydroxymethyltransferase RD13_RS14325 PF13609 Gram-negative porin RD13_RS14345 PF00083 Sugar (and other) transporter RD13_RS14355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS14355 PF03466 LysR substrate binding domain RD13_RS14360 PF00155 Aminotransferase class I and II RD13_RS14365 PF01966 HD domain RD13_RS14370 PF00403 Heavy-metal-associated domain RD13_RS14390 PF00107 Zinc-binding dehydrogenase RD13_RS14390 PF08240 Alcohol dehydrogenase GroES-like domain RD13_RS14405 PF00005 ABC transporter RD13_RS14410 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS14420 PF00501 AMP-binding enzyme RD13_RS14420 PF13193 AMP-binding enzyme C-terminal domain RD13_RS14430 PF01037 Lrp/AsnC ligand binding domain RD13_RS14430 PF13404 AsnC-type helix-turn-helix domain RD13_RS14435 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS14440 PF00677 Lumazine binding domain RD13_RS14445 PF01425 Amidase RD13_RS14460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS14460 PF03466 LysR substrate binding domain RD13_RS14465 PF07690 Major Facilitator Superfamily RD13_RS14470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD13_RS14480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS14480 PF03466 LysR substrate binding domain RD13_RS14495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RD13_RS14500 PF00005 ABC transporter RD13_RS14515 PF02653 Branched-chain amino acid transport system / permease component RD13_RS14520 PF01042 Endoribonuclease L-PSP RD13_RS14525 PF13193 AMP-binding enzyme C-terminal domain RD13_RS14525 PF00501 AMP-binding enzyme RD13_RS14535 PF01614 Bacterial transcriptional regulator RD13_RS14535 PF09339 IclR helix-turn-helix domain RD13_RS14550 PF00005 ABC transporter RD13_RS14555 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS14570 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS14575 PF02515 CoA-transferase family III RD13_RS14580 PF01425 Amidase RD13_RS14590 PF07729 FCD domain RD13_RS14590 PF00392 Bacterial regulatory proteins, gntR family RD13_RS14600 PF01594 AI-2E family transporter RD13_RS14620 PF01322 Cytochrome C' RD13_RS14625 PF08328 Adenylosuccinate lyase C-terminal RD13_RS14625 PF00206 Lyase RD13_RS14630 PF13417 Glutathione S-transferase, N-terminal domain RD13_RS14630 PF00043 Glutathione S-transferase, C-terminal domain RD13_RS14635 PF01925 Sulfite exporter TauE/SafE RD13_RS14645 PF03466 LysR substrate binding domain RD13_RS14645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS14650 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS14660 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RD13_RS14660 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RD13_RS14665 PF02233 NAD(P) transhydrogenase beta subunit RD13_RS14675 PF07715 TonB-dependent Receptor Plug Domain RD13_RS14675 PF00593 TonB dependent receptor RD13_RS14680 PF00756 Putative esterase RD13_RS14685 PF02754 Cysteine-rich domain RD13_RS14685 PF13183 4Fe-4S dicluster domain RD13_RS14690 PF01565 FAD binding domain RD13_RS14695 PF02913 FAD linked oxidases, C-terminal domain RD13_RS14695 PF01565 FAD binding domain RD13_RS14700 PF02913 FAD linked oxidases, C-terminal domain RD13_RS14700 PF01565 FAD binding domain RD13_RS14705 PF13332 Hemagglutinin repeat RD13_RS14705 PF05594 Haemagluttinin repeat RD13_RS14705 PF05860 haemagglutination activity domain RD13_RS14705 PF13018 Extended Signal Peptide of Type V secretion system RD13_RS14705 PF13332 Hemagglutinin repeat RD13_RS14705 PF05860 haemagglutination activity domain RD13_RS14705 PF13018 Extended Signal Peptide of Type V secretion system RD13_RS14705 PF05594 Haemagluttinin repeat RD13_RS14710 PF00793 DAHP synthetase I family RD13_RS14715 PF01523 Putative modulator of DNA gyrase RD13_RS14720 PF00795 Carbon-nitrogen hydrolase RD13_RS14740 PF04542 Sigma-70 region 2 RD13_RS14740 PF08281 Sigma-70, region 4 RD13_RS14750 PF04461 Protein of unknown function (DUF520) RD13_RS14765 PF01551 Peptidase family M23 RD13_RS14765 PF01476 LysM domain RD13_RS14780 PF07715 TonB-dependent Receptor Plug Domain RD13_RS14780 PF00593 TonB dependent receptor RD13_RS14795 PF05114 Protein of unknown function (DUF692) RD13_RS14815 PF01022 Bacterial regulatory protein, arsR family RD13_RS14820 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RD13_RS14825 PF00510 Cytochrome c oxidase subunit III RD13_RS14830 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD13_RS14835 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD13_RS14835 PF06481 COX Aromatic Rich Motif RD13_RS14840 PF00072 Response regulator receiver domain RD13_RS14855 PF05726 Pirin C-terminal cupin domain RD13_RS14855 PF02678 Pirin RD13_RS14875 PF02515 CoA-transferase family III RD13_RS14880 PF03466 LysR substrate binding domain RD13_RS14880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS14885 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS14895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS14895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS14895 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS14895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS14895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS14895 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS14910 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RD13_RS14910 PF01872 RibD C-terminal domain RD13_RS14925 PF03477 ATP cone domain RD13_RS14930 PF00464 Serine hydroxymethyltransferase RD13_RS14940 PF01479 S4 domain RD13_RS14940 PF00579 tRNA synthetases class I (W and Y) RD13_RS14950 PF01551 Peptidase family M23 RD13_RS14950 PF08460 Bacterial SH3 domain RD13_RS14955 PF03702 Anhydro-N-acetylmuramic acid kinase RD13_RS14960 PF01521 Iron-sulphur cluster biosynthesis RD13_RS14970 PF02774 Semialdehyde dehydrogenase, dimerisation domain RD13_RS14970 PF01118 Semialdehyde dehydrogenase, NAD binding domain RD13_RS14975 PF00380 Ribosomal protein S9/S16 RD13_RS14980 PF00572 Ribosomal protein L13 RD13_RS14985 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS14990 PF01523 Putative modulator of DNA gyrase RD13_RS14995 PF04751 Protein of unknown function (DUF615) RD13_RS15000 PF02230 Phospholipase/Carboxylesterase RD13_RS15010 PF00005 ABC transporter RD13_RS15015 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS15020 PF00857 Isochorismatase family RD13_RS15025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD13_RS15030 PF00271 Helicase conserved C-terminal domain RD13_RS15030 PF00270 DEAD/DEAH box helicase RD13_RS15030 PF03880 DbpA RNA binding domain RD13_RS15040 PF07729 FCD domain RD13_RS15040 PF00392 Bacterial regulatory proteins, gntR family RD13_RS15050 PF13607 Succinyl-CoA ligase like flavodoxin domain RD13_RS15050 PF13380 CoA binding domain RD13_RS15050 PF00583 Acetyltransferase (GNAT) family RD13_RS15055 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD13_RS15070 PF01037 Lrp/AsnC ligand binding domain RD13_RS15085 PF00317 Ribonucleotide reductase, all-alpha domain RD13_RS15085 PF02867 Ribonucleotide reductase, barrel domain RD13_RS15085 PF03477 ATP cone domain RD13_RS15090 PF00268 Ribonucleotide reductase, small chain RD13_RS15105 PF00501 AMP-binding enzyme RD13_RS15105 PF13193 AMP-binding enzyme C-terminal domain RD13_RS15110 PF03062 MBOAT, membrane-bound O-acyltransferase family RD13_RS15135 PF00294 pfkB family carbohydrate kinase RD13_RS15150 PF02785 Biotin carboxylase C-terminal domain RD13_RS15150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD13_RS15150 PF00289 Biotin carboxylase, N-terminal domain RD13_RS15155 PF00364 Biotin-requiring enzyme RD13_RS15160 PF01220 Dehydroquinase class II RD13_RS15165 PF08534 Redoxin RD13_RS15170 PF08245 Mur ligase middle domain RD13_RS15170 PF02875 Mur ligase family, glutamate ligase domain RD13_RS15170 PF01225 Mur ligase family, catalytic domain RD13_RS15175 PF05728 Uncharacterised protein family (UPF0227) RD13_RS15180 PF00773 RNB domain RD13_RS15190 PF08501 Shikimate dehydrogenase substrate binding domain RD13_RS15190 PF01488 Shikimate / quinate 5-dehydrogenase RD13_RS15190 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RD13_RS15200 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RD13_RS15210 PF01037 Lrp/AsnC ligand binding domain RD13_RS15215 PF01266 FAD dependent oxidoreductase RD13_RS15220 PF00106 short chain dehydrogenase RD13_RS15230 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS15240 PF01043 SecA preprotein cross-linking domain RD13_RS15240 PF07516 SecA Wing and Scaffold domain RD13_RS15240 PF07517 SecA DEAD-like domain RD13_RS15240 PF02810 SEC-C motif RD13_RS15245 PF08525 Opacity-associated protein A N-terminal motif RD13_RS15245 PF01551 Peptidase family M23 RD13_RS15245 PF01476 LysM domain RD13_RS15255 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RD13_RS15260 PF12327 FtsZ family, C-terminal domain RD13_RS15260 PF00091 Tubulin/FtsZ family, GTPase domain RD13_RS15265 PF02491 SHS2 domain inserted in FTSA RD13_RS15270 PF08478 POTRA domain, FtsQ-type RD13_RS15270 PF03799 Cell division protein FtsQ RD13_RS15275 PF07478 D-ala D-ala ligase C-terminus RD13_RS15275 PF01820 D-ala D-ala ligase N-terminus RD13_RS15280 PF08245 Mur ligase middle domain RD13_RS15280 PF02875 Mur ligase family, glutamate ligase domain RD13_RS15280 PF01225 Mur ligase family, catalytic domain RD13_RS15285 PF03033 Glycosyltransferase family 28 N-terminal domain RD13_RS15285 PF04101 Glycosyltransferase family 28 C-terminal domain RD13_RS15290 PF01098 Cell cycle protein RD13_RS15295 PF08245 Mur ligase middle domain RD13_RS15295 PF02875 Mur ligase family, glutamate ligase domain RD13_RS15300 PF00953 Glycosyl transferase family 4 RD13_RS15305 PF08245 Mur ligase middle domain RD13_RS15305 PF02875 Mur ligase family, glutamate ligase domain RD13_RS15310 PF03717 Penicillin-binding Protein dimerisation domain RD13_RS15310 PF00905 Penicillin binding protein transpeptidase domain RD13_RS15315 PF04999 Cell division protein FtsL RD13_RS15320 PF01795 MraW methylase family RD13_RS15325 PF02381 MraZ protein, putative antitoxin-like RD13_RS15335 PF12848 ABC transporter RD13_RS15335 PF16326 ABC transporter C-terminal domain RD13_RS15335 PF00005 ABC transporter RD13_RS15340 PF01979 Amidohydrolase family RD13_RS15345 PF01546 Peptidase family M20/M25/M40 RD13_RS15345 PF07687 Peptidase dimerisation domain RD13_RS15385 PF01037 Lrp/AsnC ligand binding domain RD13_RS15390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RD13_RS15395 PF01625 Peptide methionine sulfoxide reductase RD13_RS15400 PF00034 Cytochrome c RD13_RS15405 PF00920 Dehydratase family RD13_RS15410 PF01790 Prolipoprotein diacylglyceryl transferase RD13_RS15455 PF01970 Tripartite tricarboxylate transporter TctA family RD13_RS15465 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RD13_RS15465 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RD13_RS15470 PF02525 Flavodoxin-like fold RD13_RS15485 PF01923 Cobalamin adenosyltransferase RD13_RS15495 PF10431 C-terminal, D2-small domain, of ClpB protein RD13_RS15495 PF00004 ATPase family associated with various cellular activities (AAA) RD13_RS15495 PF07724 AAA domain (Cdc48 subfamily) RD13_RS15500 PF00227 Proteasome subunit RD13_RS15505 PF01258 Prokaryotic dksA/traR C4-type zinc finger RD13_RS15510 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD13_RS15510 PF07683 Cobalamin synthesis protein cobW C-terminal domain RD13_RS15515 PF01475 Ferric uptake regulator family RD13_RS15525 PF00005 ABC transporter RD13_RS15530 PF00950 ABC 3 transport family RD13_RS15535 PF01297 Zinc-uptake complex component A periplasmic RD13_RS15545 PF03824 High-affinity nickel-transport protein RD13_RS15550 PF00593 TonB dependent receptor RD13_RS15550 PF07715 TonB-dependent Receptor Plug Domain RD13_RS15555 PF02899 Phage integrase, N-terminal SAM-like domain RD13_RS15555 PF00589 Phage integrase family RD13_RS15565 PF01678 Diaminopimelate epimerase RD13_RS15570 PF03279 Bacterial lipid A biosynthesis acyltransferase RD13_RS15580 PF02772 S-adenosylmethionine synthetase, central domain RD13_RS15580 PF00438 S-adenosylmethionine synthetase, N-terminal domain RD13_RS15580 PF02773 S-adenosylmethionine synthetase, C-terminal domain RD13_RS15590 PF13439 Glycosyltransferase Family 4 RD13_RS15590 PF00534 Glycosyl transferases group 1 RD13_RS15595 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RD13_RS15595 PF05221 S-adenosyl-L-homocysteine hydrolase RD13_RS15600 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RD13_RS15605 PF02219 Methylenetetrahydrofolate reductase RD13_RS15615 PF03466 LysR substrate binding domain RD13_RS15615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS15620 PF00850 Histone deacetylase domain RD13_RS15625 PF00083 Sugar (and other) transporter RD13_RS15625 PF07690 Major Facilitator Superfamily RD13_RS15635 PF14718 Soluble lytic murein transglycosylase L domain RD13_RS15635 PF01464 Transglycosylase SLT domain RD13_RS15640 PF01743 Poly A polymerase head domain RD13_RS15640 PF12627 Probable RNA and SrmB- binding site of polymerase A RD13_RS15650 PF00271 Helicase conserved C-terminal domain RD13_RS15650 PF00270 DEAD/DEAH box helicase RD13_RS15655 PF03167 Uracil DNA glycosylase superfamily RD13_RS15670 PF13091 PLD-like domain RD13_RS15675 PF00005 ABC transporter RD13_RS15675 PF03459 TOBE domain RD13_RS15680 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS15690 PF00561 alpha/beta hydrolase fold RD13_RS15735 PF01810 LysE type translocator RD13_RS15745 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS15760 PF01266 FAD dependent oxidoreductase RD13_RS15785 PF17938 Tetracyclin repressor-like, C-terminal domain RD13_RS15785 PF00440 Bacterial regulatory proteins, tetR family RD13_RS15800 PF00486 Transcriptional regulatory protein, C terminal RD13_RS15800 PF00072 Response regulator receiver domain RD13_RS15810 PF12951 Passenger-associated-transport-repeat RD13_RS15820 PF00580 UvrD/REP helicase N-terminal domain RD13_RS15820 PF13361 UvrD-like helicase C-terminal domain RD13_RS15845 PF13175 AAA ATPase domain RD13_RS15850 PF01555 DNA methylase RD13_RS15865 PF13356 Arm DNA-binding domain RD13_RS15865 PF00589 Phage integrase family RD13_RS15870 PF01926 50S ribosome-binding GTPase RD13_RS15870 PF06071 Protein of unknown function (DUF933) RD13_RS15880 PF01195 Peptidyl-tRNA hydrolase RD13_RS15885 PF01386 Ribosomal L25p family RD13_RS15885 PF14693 Ribosomal protein TL5, C-terminal domain RD13_RS15890 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RD13_RS15890 PF14572 Phosphoribosyl synthetase-associated domain RD13_RS15900 PF00288 GHMP kinases N terminal domain RD13_RS15900 PF08544 GHMP kinases C terminal RD13_RS15905 PF03550 Outer membrane lipoprotein LolB RD13_RS15915 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RD13_RS15915 PF06827 Zinc finger found in FPG and IleRS RD13_RS15915 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RD13_RS15925 PF01494 FAD binding domain RD13_RS15935 PF03466 LysR substrate binding domain RD13_RS15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS15940 PF04209 homogentisate 1,2-dioxygenase RD13_RS15950 PF00884 Sulfatase RD13_RS15955 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS15955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS15955 PF08521 Two-component sensor kinase N-terminal RD13_RS15960 PF00072 Response regulator receiver domain RD13_RS15960 PF00486 Transcriptional regulatory protein, C terminal RD13_RS15965 PF01565 FAD binding domain RD13_RS15965 PF02913 FAD linked oxidases, C-terminal domain RD13_RS15975 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RD13_RS15975 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RD13_RS15975 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RD13_RS15975 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RD13_RS15980 PF00342 Phosphoglucose isomerase RD13_RS15985 PF13477 Glycosyl transferase 4-like RD13_RS15985 PF00534 Glycosyl transferases group 1 RD13_RS15990 PF13439 Glycosyltransferase Family 4 RD13_RS15990 PF00534 Glycosyl transferases group 1 RD13_RS15995 PF13439 Glycosyltransferase Family 4 RD13_RS15995 PF00534 Glycosyl transferases group 1 RD13_RS16000 PF00733 Asparagine synthase RD13_RS16000 PF13537 Glutamine amidotransferase domain RD13_RS16005 PF00534 Glycosyl transferases group 1 RD13_RS16005 PF13439 Glycosyltransferase Family 4 RD13_RS16010 PF03023 Lipid II flippase MurJ RD13_RS16015 PF01370 NAD dependent epimerase/dehydratase family RD13_RS16020 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD13_RS16020 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD13_RS16020 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD13_RS16025 PF00953 Glycosyl transferase family 4 RD13_RS16030 PF03232 Ubiquinone biosynthesis protein COQ7 RD13_RS16040 PF00303 Thymidylate synthase RD13_RS16045 PF00186 Dihydrofolate reductase RD13_RS16050 PF00392 Bacterial regulatory proteins, gntR family RD13_RS16050 PF00155 Aminotransferase class I and II RD13_RS16055 PF00202 Aminotransferase class-III RD13_RS16060 PF00171 Aldehyde dehydrogenase family RD13_RS16065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS16070 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS16075 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS16085 PF07364 Metallopeptidase family M81 RD13_RS16085 PF07171 MlrC C-terminus RD13_RS16095 PF02492 CobW/HypB/UreG, nucleotide-binding domain RD13_RS16100 PF01730 UreF RD13_RS16105 PF05194 UreE urease accessory protein, C-terminal domain RD13_RS16105 PF02814 UreE urease accessory protein, N-terminal domain RD13_RS16110 PF00449 Urease alpha-subunit, N-terminal domain RD13_RS16110 PF01979 Amidohydrolase family RD13_RS16115 PF00699 Urease beta subunit RD13_RS16120 PF04955 HupE / UreJ protein RD13_RS16125 PF00547 Urease, gamma subunit RD13_RS16130 PF01774 UreD urease accessory protein RD13_RS16135 PF09278 MerR, DNA binding RD13_RS16135 PF00376 MerR family regulatory protein RD13_RS16140 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS16155 PF07702 UTRA domain RD13_RS16155 PF00392 Bacterial regulatory proteins, gntR family RD13_RS16160 PF07476 Methylaspartate ammonia-lyase C-terminus RD13_RS16160 PF05034 Methylaspartate ammonia-lyase N-terminus RD13_RS16165 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS16180 PF04293 SpoVR like protein RD13_RS16185 PF04285 Protein of unknown function (DUF444) RD13_RS16205 PF02515 CoA-transferase family III RD13_RS16210 PF00501 AMP-binding enzyme RD13_RS16210 PF14535 AMP-binding enzyme C-terminal domain RD13_RS16215 PF08361 MAATS-type transcriptional repressor, C-terminal region RD13_RS16215 PF00440 Bacterial regulatory proteins, tetR family RD13_RS16220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS16220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS16220 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS16230 PF02653 Branched-chain amino acid transport system / permease component RD13_RS16235 PF00005 ABC transporter RD13_RS16240 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD13_RS16240 PF00005 ABC transporter RD13_RS16250 PF00106 short chain dehydrogenase RD13_RS16255 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS16265 PF00108 Thiolase, N-terminal domain RD13_RS16265 PF02803 Thiolase, C-terminal domain RD13_RS16270 PF01575 MaoC like domain RD13_RS16315 PF00075 RNase H RD13_RS16320 PF08241 Methyltransferase domain RD13_RS16325 PF00753 Metallo-beta-lactamase superfamily RD13_RS16325 PF16123 Hydroxyacylglutathione hydrolase C-terminus RD13_RS16330 PF01464 Transglycosylase SLT domain RD13_RS16330 PF01476 LysM domain RD13_RS16350 PF04391 Protein of unknown function (DUF533) RD13_RS16355 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS16370 PF00486 Transcriptional regulatory protein, C terminal RD13_RS16370 PF00072 Response regulator receiver domain RD13_RS16375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS16375 PF13493 Domain of unknown function (DUF4118) RD13_RS16375 PF02702 Osmosensitive K+ channel His kinase sensor domain RD13_RS16385 PF01654 Cytochrome bd terminal oxidase subunit I RD13_RS16390 PF00749 tRNA synthetases class I (E and Q), catalytic domain RD13_RS16390 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RD13_RS16395 PF03775 Septum formation inhibitor MinC, C-terminal domain RD13_RS16395 PF05209 Septum formation inhibitor MinC, N-terminal domain RD13_RS16400 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RD13_RS16405 PF03776 Septum formation topological specificity factor MinE RD13_RS16425 PF00005 ABC transporter RD13_RS16425 PF12848 ABC transporter RD13_RS16435 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS16440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS16445 PF00535 Glycosyl transferase family 2 RD13_RS16450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS16450 PF03466 LysR substrate binding domain RD13_RS16460 PF00005 ABC transporter RD13_RS16460 PF17755 UvrA DNA-binding domain RD13_RS16460 PF17760 UvrA interaction domain RD13_RS16465 PF00425 chorismate binding enzyme RD13_RS16465 PF04715 Anthranilate synthase component I, N terminal region RD13_RS16470 PF01063 Amino-transferase class IV RD13_RS16485 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS16490 PF13193 AMP-binding enzyme C-terminal domain RD13_RS16490 PF00501 AMP-binding enzyme RD13_RS16495 PF07702 UTRA domain RD13_RS16495 PF00392 Bacterial regulatory proteins, gntR family RD13_RS16500 PF00899 ThiF family RD13_RS16505 PF07690 Major Facilitator Superfamily RD13_RS16515 PF01243 Pyridoxamine 5'-phosphate oxidase RD13_RS16515 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RD13_RS16520 PF01613 Flavin reductase like domain RD13_RS16530 PF00551 Formyl transferase RD13_RS16535 PF03466 LysR substrate binding domain RD13_RS16535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS16540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS16540 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS16540 PF18158 Adaptive response protein AidB N-terminal domain RD13_RS16565 PF00218 Indole-3-glycerol phosphate synthase RD13_RS16570 PF02885 Glycosyl transferase family, helical bundle domain RD13_RS16570 PF00591 Glycosyl transferase family, a/b domain RD13_RS16575 PF00117 Glutamine amidotransferase class-I RD13_RS16580 PF04715 Anthranilate synthase component I, N terminal region RD13_RS16580 PF00425 chorismate binding enzyme RD13_RS16585 PF13419 Haloacid dehalogenase-like hydrolase RD13_RS16590 PF00834 Ribulose-phosphate 3 epimerase family RD13_RS16595 PF04379 ApaG domain RD13_RS16600 PF03562 MltA specific insert domain RD13_RS16600 PF06725 3D domain RD13_RS16605 PF01494 FAD binding domain RD13_RS16610 PF10411 Disulfide bond isomerase protein N-terminus RD13_RS16610 PF13098 Thioredoxin-like domain RD13_RS16615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RD13_RS16615 PF01842 ACT domain RD13_RS16615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RD13_RS16625 PF01171 PP-loop family RD13_RS16635 PF13192 Thioredoxin domain RD13_RS16635 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS16640 PF13180 PDZ domain RD13_RS16640 PF17820 PDZ domain RD13_RS16645 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS16670 PF00119 ATP synthase A chain RD13_RS16675 PF00137 ATP synthase subunit C RD13_RS16680 PF00430 ATP synthase B/B' CF(0) RD13_RS16685 PF00213 ATP synthase delta (OSCP) subunit RD13_RS16690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD13_RS16690 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD13_RS16690 PF00306 ATP synthase alpha/beta chain, C terminal domain RD13_RS16695 PF00231 ATP synthase RD13_RS16700 PF02874 ATP synthase alpha/beta family, beta-barrel domain RD13_RS16700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RD13_RS16705 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RD13_RS16715 PF01208 Uroporphyrinogen decarboxylase (URO-D) RD13_RS16720 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RD13_RS16720 PF18074 Primosomal protein N C-terminal domain RD13_RS16720 PF17764 3′ DNA-binding domain (3′BD) RD13_RS16720 PF00271 Helicase conserved C-terminal domain RD13_RS16720 PF00270 DEAD/DEAH box helicase RD13_RS16725 PF13361 UvrD-like helicase C-terminal domain RD13_RS16725 PF00580 UvrD/REP helicase N-terminal domain RD13_RS16735 PF01546 Peptidase family M20/M25/M40 RD13_RS16735 PF07687 Peptidase dimerisation domain RD13_RS16745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS16745 PF00005 ABC transporter RD13_RS16750 PF12911 N-terminal TM domain of oligopeptide transport permease C RD13_RS16750 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS16755 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS16775 PF01256 Carbohydrate kinase RD13_RS16780 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS16785 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS16800 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS16800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS16800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS16805 PF02515 CoA-transferase family III RD13_RS16810 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RD13_RS16810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD13_RS16810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD13_RS16840 PF07732 Multicopper oxidase RD13_RS16840 PF00394 Multicopper oxidase RD13_RS16840 PF07731 Multicopper oxidase RD13_RS16845 PF05275 Copper resistance protein B precursor (CopB) RD13_RS16850 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD13_RS16850 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS16850 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD13_RS16865 PF09339 IclR helix-turn-helix domain RD13_RS16865 PF01614 Bacterial transcriptional regulator RD13_RS16870 PF05995 Cysteine dioxygenase type I RD13_RS16875 PF01425 Amidase RD13_RS16880 PF13458 Periplasmic binding protein RD13_RS16905 PF13091 PLD-like domain RD13_RS16910 PF03372 Endonuclease/Exonuclease/phosphatase family RD13_RS16915 PF00152 tRNA synthetases class II (D, K and N) RD13_RS16915 PF02938 GAD domain RD13_RS16915 PF01336 OB-fold nucleic acid binding domain RD13_RS16935 PF05199 GMC oxidoreductase RD13_RS16935 PF00732 GMC oxidoreductase RD13_RS16945 PF07715 TonB-dependent Receptor Plug Domain RD13_RS16945 PF00593 TonB dependent receptor RD13_RS16950 PF01370 NAD dependent epimerase/dehydratase family RD13_RS16950 PF02222 ATP-grasp domain RD13_RS16955 PF01380 SIS domain RD13_RS16955 PF00571 CBS domain RD13_RS16975 PF00005 ABC transporter RD13_RS16980 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RD13_RS16985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RD13_RS16990 PF02603 HPr Serine kinase N terminus RD13_RS16990 PF07475 HPr Serine kinase C-terminal domain RD13_RS16995 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD13_RS16995 PF00034 Cytochrome c RD13_RS16995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RD13_RS17005 PF03668 P-loop ATPase protein family RD13_RS17010 PF03330 Lytic transglycolase RD13_RS17010 PF05036 Sporulation related domain RD13_RS17030 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD13_RS17030 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD13_RS17035 PF01799 [2Fe-2S] binding domain RD13_RS17035 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS17040 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD13_RS17040 PF00941 FAD binding domain in molybdopterin dehydrogenase RD13_RS17045 PF09084 NMT1/THI5 like RD13_RS17050 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17055 PF02441 Flavoprotein RD13_RS17060 PF00462 Glutaredoxin RD13_RS17065 PF05175 Methyltransferase small domain RD13_RS17065 PF17827 PrmC N-terminal domain RD13_RS17070 PF03462 PCRF domain RD13_RS17070 PF00472 RF-1 domain RD13_RS17075 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RD13_RS17075 PF01488 Shikimate / quinate 5-dehydrogenase RD13_RS17075 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RD13_RS17095 PF01568 Molydopterin dinucleotide binding domain RD13_RS17095 PF00384 Molybdopterin oxidoreductase RD13_RS17110 PF13607 Succinyl-CoA ligase like flavodoxin domain RD13_RS17110 PF13380 CoA binding domain RD13_RS17110 PF00583 Acetyltransferase (GNAT) family RD13_RS17115 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17120 PF12806 Acetyl-CoA dehydrogenase C-terminal like RD13_RS17120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS17120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS17120 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS17125 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RD13_RS17125 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RD13_RS17125 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS17130 PF02803 Thiolase, C-terminal domain RD13_RS17130 PF00108 Thiolase, N-terminal domain RD13_RS17135 PF01037 Lrp/AsnC ligand binding domain RD13_RS17140 PF01380 SIS domain RD13_RS17145 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RD13_RS17150 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17160 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS17165 PF13380 CoA binding domain RD13_RS17165 PF13607 Succinyl-CoA ligase like flavodoxin domain RD13_RS17170 PF03466 LysR substrate binding domain RD13_RS17170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS17175 PF00107 Zinc-binding dehydrogenase RD13_RS17175 PF08240 Alcohol dehydrogenase GroES-like domain RD13_RS17185 PF01042 Endoribonuclease L-PSP RD13_RS17195 PF01546 Peptidase family M20/M25/M40 RD13_RS17195 PF07687 Peptidase dimerisation domain RD13_RS17200 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS17205 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS17205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS17210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS17210 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS17210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS17215 PF01565 FAD binding domain RD13_RS17215 PF09330 D-lactate dehydrogenase, membrane binding RD13_RS17220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS17220 PF03466 LysR substrate binding domain RD13_RS17225 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17245 PF00701 Dihydrodipicolinate synthetase family RD13_RS17250 PF03466 LysR substrate binding domain RD13_RS17250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS17255 PF02515 CoA-transferase family III RD13_RS17260 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS17265 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS17265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS17270 PF01575 MaoC like domain RD13_RS17285 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RD13_RS17285 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RD13_RS17290 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS17295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS17295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS17295 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS17300 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17305 PF13607 Succinyl-CoA ligase like flavodoxin domain RD13_RS17305 PF13380 CoA binding domain RD13_RS17315 PF00676 Dehydrogenase E1 component RD13_RS17320 PF02779 Transketolase, pyrimidine binding domain RD13_RS17320 PF02780 Transketolase, C-terminal domain RD13_RS17325 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS17330 PF00364 Biotin-requiring enzyme RD13_RS17330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RD13_RS17330 PF02817 e3 binding domain RD13_RS17335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS17335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS17335 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS17340 PF13193 AMP-binding enzyme C-terminal domain RD13_RS17340 PF00501 AMP-binding enzyme RD13_RS17350 PF13458 Periplasmic binding protein RD13_RS17355 PF02653 Branched-chain amino acid transport system / permease component RD13_RS17360 PF00005 ABC transporter RD13_RS17360 PF12399 Branched-chain amino acid ATP-binding cassette transporter RD13_RS17365 PF00005 ABC transporter RD13_RS17370 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS17370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RD13_RS17385 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17400 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17410 PF00899 ThiF family RD13_RS17415 PF13180 PDZ domain RD13_RS17415 PF03572 Peptidase family S41 RD13_RS17420 PF01551 Peptidase family M23 RD13_RS17425 PF00300 Histidine phosphatase superfamily (branch 1) RD13_RS17430 PF17773 UPF0176 acylphosphatase like domain RD13_RS17430 PF12368 Rhodanase C-terminal RD13_RS17430 PF00581 Rhodanese-like domain RD13_RS17435 PF00462 Glutaredoxin RD13_RS17440 PF02556 Preprotein translocase subunit SecB RD13_RS17445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RD13_RS17445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RD13_RS17450 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17455 PF00588 SpoU rRNA Methylase family RD13_RS17465 PF08241 Methyltransferase domain RD13_RS17470 PF04107 Glutamate-cysteine ligase family 2(GCS2) RD13_RS17475 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RD13_RS17485 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS17490 PF00005 ABC transporter RD13_RS17500 PF01799 [2Fe-2S] binding domain RD13_RS17500 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS17505 PF00941 FAD binding domain in molybdopterin dehydrogenase RD13_RS17505 PF03450 CO dehydrogenase flavoprotein C-terminal domain RD13_RS17510 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD13_RS17510 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RD13_RS17515 PF03480 Bacterial extracellular solute-binding protein, family 7 RD13_RS17520 PF00355 Rieske [2Fe-2S] domain RD13_RS17525 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS17525 PF14759 Reductase C-terminal RD13_RS17530 PF00355 Rieske [2Fe-2S] domain RD13_RS17530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RD13_RS17540 PF00857 Isochorismatase family RD13_RS17550 PF00561 alpha/beta hydrolase fold RD13_RS17555 PF17645 Arylmalonate decarboxylase RD13_RS17565 PF12804 MobA-like NTP transferase domain RD13_RS17575 PF01047 MarR family RD13_RS17580 PF02386 Cation transport protein RD13_RS17585 PF02254 TrkA-N domain RD13_RS17585 PF02080 TrkA-C domain RD13_RS17590 PF02954 Bacterial regulatory protein, Fis family RD13_RS17590 PF00072 Response regulator receiver domain RD13_RS17590 PF00158 Sigma-54 interaction domain RD13_RS17595 PF00672 HAMP domain RD13_RS17595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS17595 PF00989 PAS fold RD13_RS17595 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS17605 PF01189 16S rRNA methyltransferase RsmB/F RD13_RS17605 PF01029 NusB family RD13_RS17615 PF01958 Domain of unknown function DUF108 RD13_RS17615 PF03447 Homoserine dehydrogenase, NAD binding domain RD13_RS17635 PF01810 LysE type translocator RD13_RS17640 PF03466 LysR substrate binding domain RD13_RS17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS17650 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17655 PF01168 Alanine racemase, N-terminal domain RD13_RS17660 PF00155 Aminotransferase class I and II RD13_RS17665 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS17675 PF00682 HMGL-like RD13_RS17680 PF02481 DNA recombination-mediator protein A RD13_RS17680 PF17782 DprA winged helix domain RD13_RS17685 PF01037 Lrp/AsnC ligand binding domain RD13_RS17690 PF00266 Aminotransferase class-V RD13_RS17695 PF01327 Polypeptide deformylase RD13_RS17705 PF02911 Formyl transferase, C-terminal domain RD13_RS17705 PF00551 Formyl transferase RD13_RS17715 PF13419 Haloacid dehalogenase-like hydrolase RD13_RS17725 PF03641 Possible lysine decarboxylase RD13_RS17735 PF04055 Radical SAM superfamily RD13_RS17735 PF00919 Uncharacterized protein family UPF0004 RD13_RS17735 PF18693 TRAM domain RD13_RS17740 PF01361 Tautomerase enzyme RD13_RS17745 PF01266 FAD dependent oxidoreductase RD13_RS17750 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17755 PF07729 FCD domain RD13_RS17755 PF00392 Bacterial regulatory proteins, gntR family RD13_RS17765 PF00202 Aminotransferase class-III RD13_RS17770 PF00491 Arginase family RD13_RS17780 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17785 PF02627 Carboxymuconolactone decarboxylase family RD13_RS17790 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS17795 PF01614 Bacterial transcriptional regulator RD13_RS17795 PF09339 IclR helix-turn-helix domain RD13_RS17800 PF00501 AMP-binding enzyme RD13_RS17800 PF13193 AMP-binding enzyme C-terminal domain RD13_RS17805 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS17815 PF12951 Passenger-associated-transport-repeat RD13_RS17815 PF12951 Passenger-associated-transport-repeat RD13_RS17835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS17835 PF03466 LysR substrate binding domain RD13_RS17845 PF01168 Alanine racemase, N-terminal domain RD13_RS17845 PF14031 Putative serine dehydratase domain RD13_RS17850 PF07411 Domain of unknown function (DUF1508) RD13_RS17855 PF01145 SPFH domain / Band 7 family RD13_RS17865 PF01042 Endoribonuclease L-PSP RD13_RS17910 PF03837 RecT family RD13_RS17945 PF00589 Phage integrase family RD13_RS17950 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS17965 PF03466 LysR substrate binding domain RD13_RS17965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS17970 PF02525 Flavodoxin-like fold RD13_RS17980 PF02096 60Kd inner membrane protein RD13_RS17980 PF14849 YidC periplasmic domain RD13_RS17985 PF01809 Putative membrane protein insertion efficiency factor RD13_RS17990 PF00825 Ribonuclease P RD13_RS17995 PF00468 Ribosomal protein L34 RD13_RS18000 PF11638 DnaA N-terminal domain RD13_RS18000 PF08299 Bacterial dnaA protein helix-turn-helix RD13_RS18000 PF00308 Bacterial dnaA protein RD13_RS18005 PF02768 DNA polymerase III beta subunit, C-terminal domain RD13_RS18005 PF02767 DNA polymerase III beta subunit, central domain RD13_RS18005 PF00712 DNA polymerase III beta subunit, N-terminal domain RD13_RS18010 PF00986 DNA gyrase B subunit, carboxyl terminus RD13_RS18010 PF01751 Toprim domain RD13_RS18010 PF00204 DNA gyrase B RD13_RS18010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS18010 PF18053 DNA gyrase B subunit insert domain RD13_RS18015 PF09339 IclR helix-turn-helix domain RD13_RS18015 PF01614 Bacterial transcriptional regulator RD13_RS18020 PF01425 Amidase RD13_RS18025 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS18035 PF01070 FMN-dependent dehydrogenase RD13_RS18055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS18055 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS18055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS18060 PF09278 MerR, DNA binding RD13_RS18060 PF00376 MerR family regulatory protein RD13_RS18075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RD13_RS18075 PF02770 Acyl-CoA dehydrogenase, middle domain RD13_RS18075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RD13_RS18085 PF02803 Thiolase, C-terminal domain RD13_RS18085 PF00108 Thiolase, N-terminal domain RD13_RS18090 PF01039 Carboxyl transferase domain RD13_RS18095 PF02785 Biotin carboxylase C-terminal domain RD13_RS18095 PF00289 Biotin carboxylase, N-terminal domain RD13_RS18095 PF00364 Biotin-requiring enzyme RD13_RS18095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RD13_RS18105 PF00202 Aminotransferase class-III RD13_RS18110 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS18115 PF14031 Putative serine dehydratase domain RD13_RS18115 PF01168 Alanine racemase, N-terminal domain RD13_RS18120 PF16868 NMT1-like family RD13_RS18130 PF07715 TonB-dependent Receptor Plug Domain RD13_RS18130 PF00593 TonB dependent receptor RD13_RS18135 PF04361 Protein of unknown function (DUF494) RD13_RS18150 PF01751 Toprim domain RD13_RS18150 PF01131 DNA topoisomerase RD13_RS18160 PF00005 ABC transporter RD13_RS18165 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS18175 PF00171 Aldehyde dehydrogenase family RD13_RS18185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RD13_RS18185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RD13_RS18185 PF00205 Thiamine pyrophosphate enzyme, central domain RD13_RS18190 PF01037 Lrp/AsnC ligand binding domain RD13_RS18195 PF01062 Bestrophin, RFP-TM, chloride channel RD13_RS18205 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RD13_RS18220 PF02574 Homocysteine S-methyltransferase RD13_RS18220 PF02310 B12 binding domain RD13_RS18220 PF00809 Pterin binding enzyme RD13_RS18220 PF02607 B12 binding domain RD13_RS18220 PF02965 Vitamin B12 dependent methionine synthase, activation domain RD13_RS18225 PF00593 TonB dependent receptor RD13_RS18225 PF07715 TonB-dependent Receptor Plug Domain RD13_RS18230 PF01497 Periplasmic binding protein RD13_RS18235 PF05690 Thiazole biosynthesis protein ThiG RD13_RS18240 PF08543 Phosphomethylpyrimidine kinase RD13_RS18255 PF02321 Outer membrane efflux protein RD13_RS18260 PF01467 Cytidylyltransferase-like RD13_RS18270 PF01594 AI-2E family transporter RD13_RS18280 PF02254 TrkA-N domain RD13_RS18280 PF07885 Ion channel RD13_RS18290 PF00164 Ribosomal protein S12/S23 RD13_RS18295 PF00177 Ribosomal protein S7p/S5e RD13_RS18300 PF03144 Elongation factor Tu domain 2 RD13_RS18300 PF00009 Elongation factor Tu GTP binding domain RD13_RS18300 PF03764 Elongation factor G, domain IV RD13_RS18300 PF14492 Elongation Factor G, domain II RD13_RS18300 PF00679 Elongation factor G C-terminus RD13_RS18305 PF00009 Elongation factor Tu GTP binding domain RD13_RS18305 PF03144 Elongation factor Tu domain 2 RD13_RS18305 PF03143 Elongation factor Tu C-terminal domain RD13_RS18310 PF00338 Ribosomal protein S10p/S20e RD13_RS18315 PF00297 Ribosomal protein L3 RD13_RS18320 PF00573 Ribosomal protein L4/L1 family RD13_RS18325 PF00276 Ribosomal protein L23 RD13_RS18330 PF03947 Ribosomal Proteins L2, C-terminal domain RD13_RS18330 PF00181 Ribosomal Proteins L2, RNA binding domain RD13_RS18335 PF00203 Ribosomal protein S19 RD13_RS18340 PF00237 Ribosomal protein L22p/L17e RD13_RS18345 PF07650 KH domain RD13_RS18345 PF00189 Ribosomal protein S3, C-terminal domain RD13_RS18350 PF00252 Ribosomal protein L16p/L10e RD13_RS18355 PF00831 Ribosomal L29 protein RD13_RS18360 PF00366 Ribosomal protein S17 RD13_RS18370 PF00171 Aldehyde dehydrogenase family RD13_RS18380 PF00238 Ribosomal protein L14p/L23e RD13_RS18385 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RD13_RS18390 PF00673 ribosomal L5P family C-terminus RD13_RS18390 PF00281 Ribosomal protein L5 RD13_RS18395 PF00253 Ribosomal protein S14p/S29e RD13_RS18400 PF00410 Ribosomal protein S8 RD13_RS18405 PF00347 Ribosomal protein L6 RD13_RS18410 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RD13_RS18415 PF03719 Ribosomal protein S5, C-terminal domain RD13_RS18415 PF00333 Ribosomal protein S5, N-terminal domain RD13_RS18420 PF00327 Ribosomal protein L30p/L7e RD13_RS18425 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RD13_RS18430 PF00344 SecY translocase RD13_RS18435 PF01176 Translation initiation factor 1A / IF-1 RD13_RS18440 PF00444 Ribosomal protein L36 RD13_RS18445 PF00416 Ribosomal protein S13/S18 RD13_RS18450 PF00411 Ribosomal protein S11 RD13_RS18455 PF01479 S4 domain RD13_RS18455 PF00163 Ribosomal protein S4/S9 N-terminal domain RD13_RS18460 PF01000 RNA polymerase Rpb3/RpoA insert domain RD13_RS18460 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RD13_RS18460 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RD13_RS18465 PF01196 Ribosomal protein L17 RD13_RS18475 PF03091 CutA1 divalent ion tolerance protein RD13_RS18480 PF11412 Disulphide bond corrector protein DsbC RD13_RS18480 PF02683 Cytochrome C biogenesis protein transmembrane region RD13_RS18485 PF00892 EamA-like transporter family RD13_RS18490 PF00490 Delta-aminolevulinic acid dehydratase RD13_RS18495 PF01926 50S ribosome-binding GTPase RD13_RS18500 PF00034 Cytochrome c RD13_RS18505 PF05140 ResB-like family RD13_RS18510 PF01578 Cytochrome C assembly protein RD13_RS18515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RD13_RS18515 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RD13_RS18520 PF01491 Frataxin-like domain RD13_RS18525 PF00905 Penicillin binding protein transpeptidase domain RD13_RS18525 PF17092 Penicillin-binding protein OB-like domain RD13_RS18525 PF00912 Transglycosylase RD13_RS18530 PF01202 Shikimate kinase RD13_RS18535 PF01761 3-dehydroquinate synthase RD13_RS18540 PF01966 HD domain RD13_RS18540 PF13286 Phosphohydrolase-associated domain RD13_RS18545 PF00043 Glutathione S-transferase, C-terminal domain RD13_RS18545 PF13417 Glutathione S-transferase, N-terminal domain RD13_RS18550 PF17755 UvrA DNA-binding domain RD13_RS18550 PF17760 UvrA interaction domain RD13_RS18555 PF07690 Major Facilitator Superfamily RD13_RS18560 PF00436 Single-strand binding protein family RD13_RS18565 PF00593 TonB dependent receptor RD13_RS18565 PF07715 TonB-dependent Receptor Plug Domain RD13_RS18575 PF03328 HpcH/HpaI aldolase/citrate lyase family RD13_RS18585 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS18595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS18595 PF03466 LysR substrate binding domain RD13_RS18600 PF01979 Amidohydrolase family RD13_RS18605 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS18610 PF00534 Glycosyl transferases group 1 RD13_RS18610 PF13439 Glycosyltransferase Family 4 RD13_RS18620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS18620 PF03466 LysR substrate binding domain RD13_RS18630 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS18635 PF00005 ABC transporter RD13_RS18655 PF01274 Malate synthase RD13_RS18660 PF07729 FCD domain RD13_RS18660 PF00392 Bacterial regulatory proteins, gntR family RD13_RS18675 PF01040 UbiA prenyltransferase family RD13_RS18680 PF00155 Aminotransferase class I and II RD13_RS18685 PF13185 GAF domain RD13_RS18690 PF00701 Dihydrodipicolinate synthetase family RD13_RS18700 PF04972 BON domain RD13_RS18700 PF01476 LysM domain RD13_RS18705 PF02597 ThiS family RD13_RS18705 PF05690 Thiazole biosynthesis protein ThiG RD13_RS18710 PF00561 alpha/beta hydrolase fold RD13_RS18715 PF02390 Putative methyltransferase RD13_RS18730 PF00682 HMGL-like RD13_RS18735 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS18750 PF00392 Bacterial regulatory proteins, gntR family RD13_RS18750 PF07702 UTRA domain RD13_RS18755 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS18765 PF00392 Bacterial regulatory proteins, gntR family RD13_RS18765 PF07702 UTRA domain RD13_RS18770 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS18780 PF00005 ABC transporter RD13_RS18785 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS18790 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS18795 PF02801 Beta-ketoacyl synthase, C-terminal domain RD13_RS18795 PF08659 KR domain RD13_RS18795 PF00550 Phosphopantetheine attachment site RD13_RS18795 PF14765 Polyketide synthase dehydratase RD13_RS18795 PF00109 Beta-ketoacyl synthase, N-terminal domain RD13_RS18795 PF08240 Alcohol dehydrogenase GroES-like domain RD13_RS18795 PF00698 Acyl transferase domain RD13_RS18795 PF08990 Erythronolide synthase docking RD13_RS18795 PF16197 Ketoacyl-synthetase C-terminal extension RD13_RS18800 PF02515 CoA-transferase family III RD13_RS18805 PF00440 Bacterial regulatory proteins, tetR family RD13_RS18810 PF00293 NUDIX domain RD13_RS18810 PF09297 NADH pyrophosphatase zinc ribbon domain RD13_RS18815 PF00970 Oxidoreductase FAD-binding domain RD13_RS18815 PF00175 Oxidoreductase NAD-binding domain RD13_RS18815 PF00111 2Fe-2S iron-sulfur cluster binding domain RD13_RS18820 PF01425 Amidase RD13_RS18830 PF03466 LysR substrate binding domain RD13_RS18830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RD13_RS18835 PF13458 Periplasmic binding protein RD13_RS18845 PF00005 ABC transporter RD13_RS18855 PF02653 Branched-chain amino acid transport system / permease component RD13_RS18865 PF00355 Rieske [2Fe-2S] domain RD13_RS18880 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RD13_RS18880 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RD13_RS18895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RD13_RS18895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RD13_RS18895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RD13_RS18900 PF07690 Major Facilitator Superfamily RD13_RS18905 PF00132 Bacterial transferase hexapeptide (six repeats) RD13_RS18905 PF12804 MobA-like NTP transferase domain RD13_RS18905 PF14602 Hexapeptide repeat of succinyl-transferase RD13_RS18925 PF02630 SCO1/SenC RD13_RS18930 PF01040 UbiA prenyltransferase family RD13_RS18935 PF02628 Cytochrome oxidase assembly protein RD13_RS18955 PF00510 Cytochrome c oxidase subunit III RD13_RS18970 PF00115 Cytochrome C and Quinol oxidase polypeptide I RD13_RS18975 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RD13_RS18975 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RD13_RS18985 PF00999 Sodium/hydrogen exchanger family RD13_RS18990 PF00149 Calcineurin-like phosphoesterase RD13_RS18995 PF00140 Sigma-70 factor, region 1.2 RD13_RS18995 PF04542 Sigma-70 region 2 RD13_RS18995 PF04545 Sigma-70, region 4 RD13_RS19005 PF00756 Putative esterase RD13_RS19010 PF00107 Zinc-binding dehydrogenase RD13_RS19010 PF08240 Alcohol dehydrogenase GroES-like domain RD13_RS19020 PF00310 Glutamine amidotransferases class-II RD13_RS19020 PF04898 Glutamate synthase central domain RD13_RS19020 PF01645 Conserved region in glutamate synthase RD13_RS19020 PF01493 GXGXG motif RD13_RS19025 PF07992 Pyridine nucleotide-disulphide oxidoreductase RD13_RS19025 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RD13_RS19030 PF03922 OmpW family RD13_RS19035 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS19040 PF00005 ABC transporter RD13_RS19045 PF02405 Permease MlaE RD13_RS19050 PF02470 MlaD protein RD13_RS19055 PF04333 MlaA lipoprotein RD13_RS19065 PF00005 ABC transporter RD13_RS19070 PF01061 ABC-2 type transporter RD13_RS19080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RD13_RS19085 PF01634 ATP phosphoribosyltransferase RD13_RS19090 PF00815 Histidinol dehydrogenase RD13_RS19095 PF00155 Aminotransferase class I and II RD13_RS19100 PF00475 Imidazoleglycerol-phosphate dehydratase RD13_RS19105 PF00117 Glutamine amidotransferase class-I RD13_RS19110 PF00977 Histidine biosynthesis protein RD13_RS19115 PF00977 Histidine biosynthesis protein RD13_RS19120 PF01502 Phosphoribosyl-AMP cyclohydrolase RD13_RS19125 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RD13_RS19130 PF01230 HIT domain RD13_RS19135 PF02416 mttA/Hcf106 family RD13_RS19140 PF02416 mttA/Hcf106 family RD13_RS19145 PF00902 Sec-independent protein translocase protein (TatC) RD13_RS19155 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS19160 PF02917 Pertussis toxin, subunit 1 RD13_RS19165 PF03440 Aerolysin/Pertussis toxin (APT) domain RD13_RS19165 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD13_RS19170 PF09275 Pertussis toxin S4 subunit RD13_RS19175 PF09276 Pertussis toxin S5 subunit RD13_RS19180 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain RD13_RS19180 PF03440 Aerolysin/Pertussis toxin (APT) domain RD13_RS19185 PF04956 TrbC/VIRB2 family RD13_RS19190 PF05101 Type IV secretory pathway, VirB3-like protein RD13_RS19195 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RD13_RS19200 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RD13_RS19210 PF04335 VirB8 protein RD13_RS19215 PF03524 Conjugal transfer protein RD13_RS19220 PF03743 Bacterial conjugation TrbI-like protein RD13_RS19225 PF00437 Type II/IV secretion system protein RD13_RS19235 PF00892 EamA-like transporter family RD13_RS19255 PF10396 GTP-binding protein TrmE N-terminus RD13_RS19255 PF12631 MnmE helical domain RD13_RS19255 PF01926 50S ribosome-binding GTPase RD13_RS19260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS19265 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS19270 PF12911 N-terminal TM domain of oligopeptide transport permease C RD13_RS19270 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS19275 PF00005 ABC transporter RD13_RS19275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS19285 PF01960 ArgJ family RD13_RS19295 PF00293 NUDIX domain RD13_RS19315 PF02321 Outer membrane efflux protein RD13_RS19320 PF00873 AcrB/AcrD/AcrF family RD13_RS19325 PF00873 AcrB/AcrD/AcrF family RD13_RS19330 PF13533 Biotin-lipoyl like RD13_RS19335 PF07072 Cell division protein RD13_RS19340 PF01121 Dephospho-CoA kinase RD13_RS19345 PF01478 Type IV leader peptidase family RD13_RS19345 PF06750 Bacterial Peptidase A24 N-terminal domain RD13_RS19360 PF02569 Pantoate-beta-alanine ligase RD13_RS19365 PF02616 Segregation and condensation protein ScpA RD13_RS19375 PF07690 Major Facilitator Superfamily RD13_RS19380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RD13_RS19380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RD13_RS19390 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS19395 PF00005 ABC transporter RD13_RS19400 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS19405 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS19410 PF00497 Bacterial extracellular solute-binding proteins, family 3 RD13_RS19415 PF00005 ABC transporter RD13_RS19420 PF18075 FtsX extracellular domain RD13_RS19425 PF03975 CheD chemotactic sensory transduction RD13_RS19435 PF10576 Iron-sulfur binding domain of endonuclease III RD13_RS19435 PF00633 Helix-hairpin-helix motif RD13_RS19435 PF14815 NUDIX domain RD13_RS19435 PF00730 HhH-GPD superfamily base excision DNA repair protein RD13_RS19445 PF08241 Methyltransferase domain RD13_RS19455 PF02515 CoA-transferase family III RD13_RS19460 PF02515 CoA-transferase family III RD13_RS19470 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS19475 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS19480 PF00881 Nitroreductase family RD13_RS19490 PF00682 HMGL-like RD13_RS19495 PF00378 Enoyl-CoA hydratase/isomerase RD13_RS19500 PF02515 CoA-transferase family III RD13_RS19505 PF03401 Tripartite tricarboxylate transporter family receptor RD13_RS19515 PF06628 Catalase-related immune-responsive RD13_RS19515 PF00199 Catalase RD13_RS19520 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS19525 PF00005 ABC transporter RD13_RS19535 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RD13_RS19540 PF01546 Peptidase family M20/M25/M40 RD13_RS19540 PF07687 Peptidase dimerisation domain RD13_RS19545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS19545 PF00005 ABC transporter RD13_RS19550 PF00005 ABC transporter RD13_RS19550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RD13_RS19555 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS19555 PF12911 N-terminal TM domain of oligopeptide transport permease C RD13_RS19560 PF00528 Binding-protein-dependent transport system inner membrane component RD13_RS19565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RD13_RS19570 PF01926 50S ribosome-binding GTPase RD13_RS19570 PF12631 MnmE helical domain RD13_RS19570 PF10396 GTP-binding protein TrmE N-terminus RD13_RS19580 PF00072 Response regulator receiver domain RD13_RS19580 PF00486 Transcriptional regulatory protein, C terminal RD13_RS19585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RD13_RS19585 PF00512 His Kinase A (phospho-acceptor) domain RD13_RS19600 PF01970 Tripartite tricarboxylate transporter TctA family RD13_RS19605 PF00155 Aminotransferase class I and II RD13_RS19610 PF00313 'Cold-shock' DNA-binding domain