locus-tag class description AVS54_RS00005 PF13932 GidA associated domain AVS54_RS00005 PF01134 Glucose inhibited division protein A AVS54_RS00010 PF02527 rRNA small subunit methyltransferase G AVS54_RS00015 PF13614 AAA domain AVS54_RS00025 PF02195 ParB-like nuclease domain AVS54_RS00025 PF17762 HTH domain found in ParB protein AVS54_RS00030 PF00710 Asparaginase, N-terminal AVS54_RS00030 PF17763 Glutaminase/Asparaginase C-terminal domain AVS54_RS00035 PF00710 Asparaginase, N-terminal AVS54_RS00035 PF17763 Glutaminase/Asparaginase C-terminal domain AVS54_RS00055 PF03144 Elongation factor Tu domain 2 AVS54_RS00055 PF03143 Elongation factor Tu C-terminal domain AVS54_RS00055 PF00009 Elongation factor Tu GTP binding domain AVS54_RS00065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AVS54_RS00070 PF02357 Transcription termination factor nusG AVS54_RS00070 PF00467 KOW motif AVS54_RS00075 PF03946 Ribosomal protein L11, N-terminal domain AVS54_RS00075 PF00298 Ribosomal protein L11, RNA binding domain AVS54_RS00080 PF00687 Ribosomal protein L1p/L10e family AVS54_RS00085 PF00466 Ribosomal protein L10 AVS54_RS00090 PF00542 Ribosomal protein L7/L12 C-terminal domain AVS54_RS00090 PF16320 Ribosomal protein L7/L12 dimerisation domain AVS54_RS00095 PF04560 RNA polymerase Rpb2, domain 7 AVS54_RS00095 PF04565 RNA polymerase Rpb2, domain 3 AVS54_RS00095 PF10385 RNA polymerase beta subunit external 1 domain AVS54_RS00095 PF04561 RNA polymerase Rpb2, domain 2 AVS54_RS00095 PF04563 RNA polymerase beta subunit AVS54_RS00095 PF00562 RNA polymerase Rpb2, domain 6 AVS54_RS00100 PF04998 RNA polymerase Rpb1, domain 5 AVS54_RS00100 PF05000 RNA polymerase Rpb1, domain 4 AVS54_RS00100 PF04983 RNA polymerase Rpb1, domain 3 AVS54_RS00100 PF04997 RNA polymerase Rpb1, domain 1 AVS54_RS00100 PF00623 RNA polymerase Rpb1, domain 2 AVS54_RS00130 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS00130 PF00072 Response regulator receiver domain AVS54_RS00140 PF02515 CoA-transferase family III AVS54_RS00155 PF01575 MaoC like domain AVS54_RS00160 PF03466 LysR substrate binding domain AVS54_RS00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS00165 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS00190 PF02091 Glycyl-tRNA synthetase alpha subunit AVS54_RS00195 PF05746 DALR anticodon binding domain AVS54_RS00195 PF02092 Glycyl-tRNA synthetase beta subunit AVS54_RS00205 PF01553 Acyltransferase AVS54_RS00215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVS54_RS00220 PF01327 Polypeptide deformylase AVS54_RS00255 PF02615 Malate/L-lactate dehydrogenase AVS54_RS00260 PF00561 alpha/beta hydrolase fold AVS54_RS00265 PF07021 Methionine biosynthesis protein MetW AVS54_RS00265 PF00561 alpha/beta hydrolase fold AVS54_RS00280 PF07690 Major Facilitator Superfamily AVS54_RS00290 PF01177 Asp/Glu/Hydantoin racemase AVS54_RS00295 PF00005 ABC transporter AVS54_RS00300 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS00305 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS00310 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS00345 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS00360 PF00175 Oxidoreductase NAD-binding domain AVS54_RS00360 PF00111 2Fe-2S iron-sulfur cluster binding domain AVS54_RS00360 PF00970 Oxidoreductase FAD-binding domain AVS54_RS00365 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVS54_RS00375 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS00405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS00405 PF00183 Hsp90 protein AVS54_RS00410 PF13417 Glutathione S-transferase, N-terminal domain AVS54_RS00410 PF00043 Glutathione S-transferase, C-terminal domain AVS54_RS00415 PF01510 N-acetylmuramoyl-L-alanine amidase AVS54_RS00425 PF01578 Cytochrome C assembly protein AVS54_RS00430 PF02978 Signal peptide binding domain AVS54_RS00430 PF02881 SRP54-type protein, helical bundle domain AVS54_RS00430 PF00448 SRP54-type protein, GTPase domain AVS54_RS00445 PF02719 Polysaccharide biosynthesis protein AVS54_RS00455 PF10997 Alternate to MurJ AVS54_RS00460 PF00534 Glycosyl transferases group 1 AVS54_RS00460 PF00862 Sucrose synthase AVS54_RS00465 PF02397 Bacterial sugar transferase AVS54_RS00470 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVS54_RS00480 PF02350 UDP-N-acetylglucosamine 2-epimerase AVS54_RS00485 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVS54_RS00490 PF00132 Bacterial transferase hexapeptide (six repeats) AVS54_RS00495 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVS54_RS00495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVS54_RS00500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AVS54_RS00505 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AVS54_RS00505 PF00534 Glycosyl transferases group 1 AVS54_RS00515 PF03309 Type III pantothenate kinase AVS54_RS00525 PF02405 Permease MlaE AVS54_RS00530 PF00005 ABC transporter AVS54_RS00550 PF07943 Penicillin-binding protein 5, C-terminal domain AVS54_RS00550 PF00768 D-alanyl-D-alanine carboxypeptidase AVS54_RS00555 PF01063 Amino-transferase class IV AVS54_RS00560 PF04359 Protein of unknown function (DUF493) AVS54_RS00565 PF03099 Biotin/lipoate A/B protein ligase family AVS54_RS00570 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AVS54_RS00570 PF04055 Radical SAM superfamily AVS54_RS00575 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AVS54_RS00580 PF04321 RmlD substrate binding domain AVS54_RS00585 PF16363 GDP-mannose 4,6 dehydratase AVS54_RS00600 PF01053 Cys/Met metabolism PLP-dependent enzyme AVS54_RS00605 PF00085 Thioredoxin AVS54_RS00605 PF01323 DSBA-like thioredoxin domain AVS54_RS00615 PF05746 DALR anticodon binding domain AVS54_RS00615 PF00750 tRNA synthetases class I (R) AVS54_RS00615 PF03485 Arginyl tRNA synthetase N terminal domain AVS54_RS00635 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS00640 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS00645 PF13416 Bacterial extracellular solute-binding protein AVS54_RS00650 PF17912 MalK OB fold domain AVS54_RS00650 PF00005 ABC transporter AVS54_RS00655 PF00149 Calcineurin-like phosphoesterase AVS54_RS00665 PF12857 TOBE-like domain AVS54_RS00665 PF00005 ABC transporter AVS54_RS00670 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS00685 PF00356 Bacterial regulatory proteins, lacI family AVS54_RS00695 PF01425 Amidase AVS54_RS00700 PF00682 HMGL-like AVS54_RS00700 PF08502 LeuA allosteric (dimerisation) domain AVS54_RS00710 PF04552 Sigma-54, DNA binding domain AVS54_RS00710 PF00309 Sigma-54 factor, Activator interacting domain (AID) AVS54_RS00710 PF04963 Sigma-54 factor, core binding domain AVS54_RS00720 PF03466 LysR substrate binding domain AVS54_RS00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS00735 PF13609 Gram-negative porin AVS54_RS00740 PF00585 C-terminal regulatory domain of Threonine dehydratase AVS54_RS00740 PF00291 Pyridoxal-phosphate dependent enzyme AVS54_RS00755 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS00755 PF07729 FCD domain AVS54_RS00760 PF02515 CoA-transferase family III AVS54_RS00770 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS00780 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS00790 PF03746 LamB/YcsF family AVS54_RS00795 PF02626 Carboxyltransferase domain, subdomain A and B AVS54_RS00800 PF02682 Carboxyltransferase domain, subdomain C and D AVS54_RS00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS00810 PF03466 LysR substrate binding domain AVS54_RS00815 PF01842 ACT domain AVS54_RS00815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVS54_RS00815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVS54_RS00825 PF00672 HAMP domain AVS54_RS00825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS00825 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS00830 PF00072 Response regulator receiver domain AVS54_RS00830 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS00835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS00835 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS00835 PF11808 Phosphate regulon sensor protein PhoR AVS54_RS00835 PF00989 PAS fold AVS54_RS00840 PF00072 Response regulator receiver domain AVS54_RS00840 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS00845 PF01209 ubiE/COQ5 methyltransferase family AVS54_RS00860 PF03109 ABC1 family AVS54_RS00875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS00875 PF00005 ABC transporter AVS54_RS00880 PF04536 TPM domain AVS54_RS00890 PF00271 Helicase conserved C-terminal domain AVS54_RS00890 PF00270 DEAD/DEAH box helicase AVS54_RS00895 PF01810 LysE type translocator AVS54_RS00900 PF16658 Class II release factor RF3, C-terminal domain AVS54_RS00900 PF03144 Elongation factor Tu domain 2 AVS54_RS00900 PF00009 Elongation factor Tu GTP binding domain AVS54_RS00910 PF00210 Ferritin-like domain AVS54_RS00935 PF00581 Rhodanese-like domain AVS54_RS00935 PF17773 UPF0176 acylphosphatase like domain AVS54_RS00940 PF09334 tRNA synthetases class I (M) AVS54_RS00940 PF01588 Putative tRNA binding domain AVS54_RS00950 PF10609 NUBPL iron-transfer P-loop NTPase AVS54_RS00965 PF00692 dUTPase AVS54_RS00990 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AVS54_RS00990 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AVS54_RS00990 PF01276 Orn/Lys/Arg decarboxylase, major domain AVS54_RS01005 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AVS54_RS01005 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AVS54_RS01010 PF02535 ZIP Zinc transporter AVS54_RS01015 PF08669 Glycine cleavage T-protein C-terminal barrel domain AVS54_RS01015 PF01571 Aminomethyltransferase folate-binding domain AVS54_RS01020 PF01597 Glycine cleavage H-protein AVS54_RS01025 PF02347 Glycine cleavage system P-protein AVS54_RS01030 PF07729 FCD domain AVS54_RS01030 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS01035 PF02515 CoA-transferase family III AVS54_RS01045 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS01065 PF12146 Serine aminopeptidase, S33 AVS54_RS01075 PF02426 Muconolactone delta-isomerase AVS54_RS01080 PF01144 Coenzyme A transferase AVS54_RS01085 PF01144 Coenzyme A transferase AVS54_RS01090 PF01614 Bacterial transcriptional regulator AVS54_RS01090 PF09339 IclR helix-turn-helix domain AVS54_RS01100 PF02667 Short chain fatty acid transporter AVS54_RS01105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVS54_RS01105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVS54_RS01110 PF03797 Autotransporter beta-domain AVS54_RS01110 PF00082 Subtilase family AVS54_RS01115 PF00311 Phosphoenolpyruvate carboxylase AVS54_RS01120 PF06508 Queuosine biosynthesis protein QueC AVS54_RS01150 PF02913 FAD linked oxidases, C-terminal domain AVS54_RS01150 PF01565 FAD binding domain AVS54_RS01155 PF00171 Aldehyde dehydrogenase family AVS54_RS01160 PF01964 Radical SAM ThiC family AVS54_RS01160 PF13667 ThiC-associated domain AVS54_RS01165 PF02355 Protein export membrane protein AVS54_RS01165 PF07549 SecD/SecF GG Motif AVS54_RS01170 PF09518 HindIII restriction endonuclease AVS54_RS01200 PF02627 Carboxymuconolactone decarboxylase family AVS54_RS01205 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVS54_RS01205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVS54_RS01210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVS54_RS01210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVS54_RS01215 PF07702 UTRA domain AVS54_RS01215 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS01220 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS01225 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVS54_RS01235 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS01240 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AVS54_RS01245 PF12626 Polymerase A arginine-rich C-terminus AVS54_RS01245 PF12627 Probable RNA and SrmB- binding site of polymerase A AVS54_RS01245 PF01743 Poly A polymerase head domain AVS54_RS01255 PF00308 Bacterial dnaA protein AVS54_RS01260 PF00586 AIR synthase related protein, N-terminal domain AVS54_RS01260 PF02769 AIR synthase related protein, C-terminal domain AVS54_RS01270 PF08676 MutL C terminal dimerisation domain AVS54_RS01270 PF01119 DNA mismatch repair protein, C-terminal domain AVS54_RS01275 PF09335 SNARE associated Golgi protein AVS54_RS01280 PF01520 N-acetylmuramoyl-L-alanine amidase AVS54_RS01280 PF11741 AMIN domain AVS54_RS01285 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AVS54_RS01290 PF10415 Fumarase C C-terminus AVS54_RS01290 PF00206 Lyase AVS54_RS01300 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS01305 PF03466 LysR substrate binding domain AVS54_RS01305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS01315 PF02515 CoA-transferase family III AVS54_RS01320 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS01325 PF18158 Adaptive response protein AidB N-terminal domain AVS54_RS01325 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS01325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS01345 PF01654 Cytochrome bd terminal oxidase subunit I AVS54_RS01350 PF02322 Cytochrome bd terminal oxidase subunit II AVS54_RS01355 PF08173 Membrane bound YbgT-like protein AVS54_RS01360 PF00664 ABC transporter transmembrane region AVS54_RS01360 PF00005 ABC transporter AVS54_RS01365 PF00664 ABC transporter transmembrane region AVS54_RS01365 PF00005 ABC transporter AVS54_RS01370 PF00156 Phosphoribosyl transferase domain AVS54_RS01385 PF13609 Gram-negative porin AVS54_RS01415 PF04386 Stringent starvation protein B AVS54_RS01420 PF00043 Glutathione S-transferase, C-terminal domain AVS54_RS01420 PF02798 Glutathione S-transferase, N-terminal domain AVS54_RS01425 PF02167 Cytochrome C1 family AVS54_RS01430 PF00033 Cytochrome b/b6/petB AVS54_RS01430 PF00032 Cytochrome b(C-terminal)/b6/petD AVS54_RS01435 PF00355 Rieske [2Fe-2S] domain AVS54_RS01435 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AVS54_RS01440 PF01741 Large-conductance mechanosensitive channel, MscL AVS54_RS01445 PF01784 NIF3 (NGG1p interacting factor 3) AVS54_RS01450 PF13180 PDZ domain AVS54_RS01460 PF04299 Putative FMN-binding domain AVS54_RS01465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVS54_RS01470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS01475 PF07859 alpha/beta hydrolase fold AVS54_RS01485 PF00682 HMGL-like AVS54_RS01485 PF08502 LeuA allosteric (dimerisation) domain AVS54_RS01490 PF12833 Helix-turn-helix domain AVS54_RS01495 PF00920 Dehydratase family AVS54_RS01500 PF07690 Major Facilitator Superfamily AVS54_RS01505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS01505 PF03466 LysR substrate binding domain AVS54_RS01515 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) AVS54_RS01545 PF07859 alpha/beta hydrolase fold AVS54_RS01555 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS01560 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS01560 PF11862 Domain of unknown function (DUF3382) AVS54_RS01565 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVS54_RS01565 PF00005 ABC transporter AVS54_RS01570 PF00005 ABC transporter AVS54_RS01585 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS01590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS01590 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS01590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS01595 PF00501 AMP-binding enzyme AVS54_RS01595 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS01615 PF00202 Aminotransferase class-III AVS54_RS01620 PF02581 Thiamine monophosphate synthase AVS54_RS01625 PF08543 Phosphomethylpyrimidine kinase AVS54_RS01630 PF00301 Rubredoxin AVS54_RS01635 PF02622 Uncharacterized ACR, COG1678 AVS54_RS01640 PF03652 Holliday junction resolvase AVS54_RS01645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVS54_RS01645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVS54_RS01650 PF01979 Amidohydrolase family AVS54_RS01655 PF01553 Acyltransferase AVS54_RS01660 PF00149 Calcineurin-like phosphoesterase AVS54_RS01670 PF00912 Transglycosylase AVS54_RS01685 PF00501 AMP-binding enzyme AVS54_RS01685 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS01690 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS01705 PF12706 Beta-lactamase superfamily domain AVS54_RS01710 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS01715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS01715 PF03466 LysR substrate binding domain AVS54_RS01725 PF11737 Protein of unknown function (DUF3300) AVS54_RS01735 PF00563 EAL domain AVS54_RS01735 PF00990 Diguanylate cyclase, GGDEF domain AVS54_RS01735 PF03707 Bacterial signalling protein N terminal repeat AVS54_RS01740 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AVS54_RS01740 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AVS54_RS01745 PF13532 2OG-Fe(II) oxygenase superfamily AVS54_RS01750 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA AVS54_RS01755 PF04463 Protein of unknown function (DUF523) AVS54_RS01760 PF00005 ABC transporter AVS54_RS01765 PF01032 FecCD transport family AVS54_RS01770 PF01497 Periplasmic binding protein AVS54_RS01775 PF05171 Haemin-degrading HemS.ChuX domain AVS54_RS01780 PF00593 TonB dependent receptor AVS54_RS01780 PF04886 PT repeat AVS54_RS01780 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS01785 PF04773 FecR protein AVS54_RS01785 PF16220 Domain of unknown function (DUF4880) AVS54_RS01790 PF08281 Sigma-70, region 4 AVS54_RS01790 PF04542 Sigma-70 region 2 AVS54_RS01815 PF02423 Ornithine cyclodeaminase/mu-crystallin family AVS54_RS01825 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS01825 PF07729 FCD domain AVS54_RS01845 PF00171 Aldehyde dehydrogenase family AVS54_RS01855 PF00111 2Fe-2S iron-sulfur cluster binding domain AVS54_RS01855 PF00175 Oxidoreductase NAD-binding domain AVS54_RS01855 PF00970 Oxidoreductase FAD-binding domain AVS54_RS01880 PF03458 UPF0126 domain AVS54_RS01885 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVS54_RS01885 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AVS54_RS01890 PF03372 Endonuclease/Exonuclease/phosphatase family AVS54_RS01895 PF00156 Phosphoribosyl transferase domain AVS54_RS01900 PF02637 GatB domain AVS54_RS01900 PF02934 GatB/GatE catalytic domain AVS54_RS01905 PF01425 Amidase AVS54_RS01910 PF02686 Glu-tRNAGln amidotransferase C subunit AVS54_RS01920 PF04085 rod shape-determining protein MreC AVS54_RS01930 PF00905 Penicillin binding protein transpeptidase domain AVS54_RS01930 PF03717 Penicillin-binding Protein dimerisation domain AVS54_RS01935 PF01098 Cell cycle protein AVS54_RS01940 PF02615 Malate/L-lactate dehydrogenase AVS54_RS01945 PF00939 Sodium:sulfate symporter transmembrane region AVS54_RS01950 PF00440 Bacterial regulatory proteins, tetR family AVS54_RS01960 PF00696 Amino acid kinase family AVS54_RS01965 PF03180 NLPA lipoprotein AVS54_RS01970 PF00578 AhpC/TSA family AVS54_RS01975 PF04972 BON domain AVS54_RS01980 PF13580 SIS domain AVS54_RS01990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVS54_RS01995 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AVS54_RS01995 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AVS54_RS02015 PF02515 CoA-transferase family III AVS54_RS02020 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS02025 PF02515 CoA-transferase family III AVS54_RS02040 PF09339 IclR helix-turn-helix domain AVS54_RS02045 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS02055 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS02060 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS02060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVS54_RS02060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVS54_RS02065 PF02515 CoA-transferase family III AVS54_RS02070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVS54_RS02070 PF00205 Thiamine pyrophosphate enzyme, central domain AVS54_RS02070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVS54_RS02075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS02075 PF03466 LysR substrate binding domain AVS54_RS02085 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS02095 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS02105 PF00892 EamA-like transporter family AVS54_RS02110 PF01810 LysE type translocator AVS54_RS02115 PF12146 Serine aminopeptidase, S33 AVS54_RS02135 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AVS54_RS02140 PF00535 Glycosyl transferase family 2 AVS54_RS02160 PF03616 Sodium/glutamate symporter AVS54_RS02170 PF02667 Short chain fatty acid transporter AVS54_RS02185 PF00929 Exonuclease AVS54_RS02190 PF00873 AcrB/AcrD/AcrF family AVS54_RS02215 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS02220 PF03466 LysR substrate binding domain AVS54_RS02220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS02225 PF09330 D-lactate dehydrogenase, membrane binding AVS54_RS02225 PF01565 FAD binding domain AVS54_RS02230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS02230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS02230 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS02235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS02235 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS02235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS02240 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS02245 PF07687 Peptidase dimerisation domain AVS54_RS02245 PF01546 Peptidase family M20/M25/M40 AVS54_RS02255 PF01042 Endoribonuclease L-PSP AVS54_RS02265 PF08240 Alcohol dehydrogenase GroES-like domain AVS54_RS02265 PF00107 Zinc-binding dehydrogenase AVS54_RS02270 PF03466 LysR substrate binding domain AVS54_RS02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS02275 PF13380 CoA binding domain AVS54_RS02275 PF13607 Succinyl-CoA ligase like flavodoxin domain AVS54_RS02280 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS02290 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS02295 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AVS54_RS02300 PF01380 SIS domain AVS54_RS02305 PF01037 Lrp/AsnC ligand binding domain AVS54_RS02310 PF00108 Thiolase, N-terminal domain AVS54_RS02310 PF02803 Thiolase, C-terminal domain AVS54_RS02315 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVS54_RS02315 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS02315 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVS54_RS02320 PF12806 Acetyl-CoA dehydrogenase C-terminal like AVS54_RS02320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS02320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS02320 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS02325 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS02330 PF13380 CoA binding domain AVS54_RS02330 PF13607 Succinyl-CoA ligase like flavodoxin domain AVS54_RS02330 PF00583 Acetyltransferase (GNAT) family AVS54_RS02345 PF00384 Molybdopterin oxidoreductase AVS54_RS02345 PF01568 Molydopterin dinucleotide binding domain AVS54_RS02365 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AVS54_RS02365 PF01488 Shikimate / quinate 5-dehydrogenase AVS54_RS02365 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AVS54_RS02370 PF03462 PCRF domain AVS54_RS02370 PF00472 RF-1 domain AVS54_RS02375 PF17827 PrmC N-terminal domain AVS54_RS02375 PF05175 Methyltransferase small domain AVS54_RS02380 PF00462 Glutaredoxin AVS54_RS02385 PF02441 Flavoprotein AVS54_RS02390 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS02395 PF09084 NMT1/THI5 like AVS54_RS02400 PF00941 FAD binding domain in molybdopterin dehydrogenase AVS54_RS02400 PF03450 CO dehydrogenase flavoprotein C-terminal domain AVS54_RS02405 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVS54_RS02405 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVS54_RS02425 PF05036 Sporulation related domain AVS54_RS02425 PF03330 Lytic transglycolase AVS54_RS02430 PF03668 P-loop ATPase protein family AVS54_RS02440 PF00034 Cytochrome c AVS54_RS02440 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVS54_RS02440 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVS54_RS02445 PF02603 HPr Serine kinase N terminus AVS54_RS02445 PF07475 HPr Serine kinase C-terminal domain AVS54_RS02450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVS54_RS02455 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AVS54_RS02460 PF00005 ABC transporter AVS54_RS02480 PF00571 CBS domain AVS54_RS02480 PF01380 SIS domain AVS54_RS02485 PF02222 ATP-grasp domain AVS54_RS02485 PF01370 NAD dependent epimerase/dehydratase family AVS54_RS02490 PF00593 TonB dependent receptor AVS54_RS02490 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS02500 PF05199 GMC oxidoreductase AVS54_RS02500 PF00732 GMC oxidoreductase AVS54_RS02520 PF00152 tRNA synthetases class II (D, K and N) AVS54_RS02520 PF02938 GAD domain AVS54_RS02520 PF01336 OB-fold nucleic acid binding domain AVS54_RS02525 PF03372 Endonuclease/Exonuclease/phosphatase family AVS54_RS02530 PF13091 PLD-like domain AVS54_RS02555 PF13458 Periplasmic binding protein AVS54_RS02560 PF01425 Amidase AVS54_RS02565 PF05995 Cysteine dioxygenase type I AVS54_RS02570 PF09339 IclR helix-turn-helix domain AVS54_RS02570 PF01614 Bacterial transcriptional regulator AVS54_RS02575 PF02515 CoA-transferase family III AVS54_RS02580 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS02580 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVS54_RS02580 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVS54_RS02585 PF05275 Copper resistance protein B precursor (CopB) AVS54_RS02590 PF07731 Multicopper oxidase AVS54_RS02590 PF00394 Multicopper oxidase AVS54_RS02590 PF07732 Multicopper oxidase AVS54_RS02620 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AVS54_RS02620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVS54_RS02620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVS54_RS02625 PF02515 CoA-transferase family III AVS54_RS02630 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS02630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS02630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS02645 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS02650 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS02655 PF01256 Carbohydrate kinase AVS54_RS02675 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS02680 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS02680 PF12911 N-terminal TM domain of oligopeptide transport permease C AVS54_RS02685 PF00005 ABC transporter AVS54_RS02685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS02695 PF01546 Peptidase family M20/M25/M40 AVS54_RS02695 PF07687 Peptidase dimerisation domain AVS54_RS02705 PF13361 UvrD-like helicase C-terminal domain AVS54_RS02705 PF00580 UvrD/REP helicase N-terminal domain AVS54_RS02710 PF17764 3′ DNA-binding domain (3′BD) AVS54_RS02710 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AVS54_RS02710 PF18074 Primosomal protein N C-terminal domain AVS54_RS02710 PF00270 DEAD/DEAH box helicase AVS54_RS02710 PF00271 Helicase conserved C-terminal domain AVS54_RS02715 PF01208 Uroporphyrinogen decarboxylase (URO-D) AVS54_RS02725 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AVS54_RS02730 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVS54_RS02730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVS54_RS02735 PF00231 ATP synthase AVS54_RS02740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVS54_RS02740 PF00306 ATP synthase alpha/beta chain, C terminal domain AVS54_RS02740 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVS54_RS02745 PF00213 ATP synthase delta (OSCP) subunit AVS54_RS02750 PF00430 ATP synthase B/B' CF(0) AVS54_RS02755 PF00137 ATP synthase subunit C AVS54_RS02760 PF00119 ATP synthase A chain AVS54_RS02785 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS02790 PF13180 PDZ domain AVS54_RS02790 PF17820 PDZ domain AVS54_RS02795 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS02795 PF13192 Thioredoxin domain AVS54_RS02805 PF01171 PP-loop family AVS54_RS02815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVS54_RS02815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVS54_RS02815 PF01842 ACT domain AVS54_RS02820 PF10411 Disulfide bond isomerase protein N-terminus AVS54_RS02820 PF13098 Thioredoxin-like domain AVS54_RS02825 PF01494 FAD binding domain AVS54_RS02830 PF06725 3D domain AVS54_RS02830 PF03562 MltA specific insert domain AVS54_RS02835 PF04379 ApaG domain AVS54_RS02840 PF00834 Ribulose-phosphate 3 epimerase family AVS54_RS02845 PF13419 Haloacid dehalogenase-like hydrolase AVS54_RS02850 PF00425 chorismate binding enzyme AVS54_RS02850 PF04715 Anthranilate synthase component I, N terminal region AVS54_RS02855 PF00117 Glutamine amidotransferase class-I AVS54_RS02860 PF02885 Glycosyl transferase family, helical bundle domain AVS54_RS02860 PF00591 Glycosyl transferase family, a/b domain AVS54_RS02865 PF00218 Indole-3-glycerol phosphate synthase AVS54_RS02885 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS02885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS02885 PF18158 Adaptive response protein AidB N-terminal domain AVS54_RS02890 PF03466 LysR substrate binding domain AVS54_RS02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS02895 PF00551 Formyl transferase AVS54_RS02905 PF01613 Flavin reductase like domain AVS54_RS02910 PF01243 Pyridoxamine 5'-phosphate oxidase AVS54_RS02910 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AVS54_RS02920 PF07690 Major Facilitator Superfamily AVS54_RS02925 PF00899 ThiF family AVS54_RS02930 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS02930 PF07702 UTRA domain AVS54_RS02935 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS02935 PF00501 AMP-binding enzyme AVS54_RS02940 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS02955 PF01063 Amino-transferase class IV AVS54_RS02960 PF00425 chorismate binding enzyme AVS54_RS02960 PF04715 Anthranilate synthase component I, N terminal region AVS54_RS02965 PF17755 UvrA DNA-binding domain AVS54_RS02965 PF00005 ABC transporter AVS54_RS02965 PF17760 UvrA interaction domain AVS54_RS02975 PF03466 LysR substrate binding domain AVS54_RS02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS02980 PF00535 Glycosyl transferase family 2 AVS54_RS02985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS02990 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS03005 PF00005 ABC transporter AVS54_RS03005 PF12848 ABC transporter AVS54_RS03025 PF03776 Septum formation topological specificity factor MinE AVS54_RS03030 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AVS54_RS03035 PF05209 Septum formation inhibitor MinC, N-terminal domain AVS54_RS03035 PF03775 Septum formation inhibitor MinC, C-terminal domain AVS54_RS03040 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AVS54_RS03040 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVS54_RS03045 PF01654 Cytochrome bd terminal oxidase subunit I AVS54_RS03055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS03055 PF13493 Domain of unknown function (DUF4118) AVS54_RS03055 PF02702 Osmosensitive K+ channel His kinase sensor domain AVS54_RS03060 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS03060 PF00072 Response regulator receiver domain AVS54_RS03075 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS03080 PF04391 Protein of unknown function (DUF533) AVS54_RS03100 PF01464 Transglycosylase SLT domain AVS54_RS03100 PF01476 LysM domain AVS54_RS03105 PF16123 Hydroxyacylglutathione hydrolase C-terminus AVS54_RS03105 PF00753 Metallo-beta-lactamase superfamily AVS54_RS03110 PF08241 Methyltransferase domain AVS54_RS03115 PF00075 RNase H AVS54_RS03125 PF00732 GMC oxidoreductase AVS54_RS03125 PF05199 GMC oxidoreductase AVS54_RS03165 PF01575 MaoC like domain AVS54_RS03170 PF02803 Thiolase, C-terminal domain AVS54_RS03170 PF00108 Thiolase, N-terminal domain AVS54_RS03180 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS03185 PF00106 short chain dehydrogenase AVS54_RS03195 PF00005 ABC transporter AVS54_RS03195 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVS54_RS03200 PF00005 ABC transporter AVS54_RS03205 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS03215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS03215 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS03215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS03220 PF08361 MAATS-type transcriptional repressor, C-terminal region AVS54_RS03220 PF00440 Bacterial regulatory proteins, tetR family AVS54_RS03225 PF14535 AMP-binding enzyme C-terminal domain AVS54_RS03225 PF00501 AMP-binding enzyme AVS54_RS03230 PF02515 CoA-transferase family III AVS54_RS03250 PF04285 Protein of unknown function (DUF444) AVS54_RS03255 PF04293 SpoVR like protein AVS54_RS03270 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS03275 PF05034 Methylaspartate ammonia-lyase N-terminus AVS54_RS03275 PF07476 Methylaspartate ammonia-lyase C-terminus AVS54_RS03280 PF07702 UTRA domain AVS54_RS03280 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS03295 PF00111 2Fe-2S iron-sulfur cluster binding domain AVS54_RS03300 PF09278 MerR, DNA binding AVS54_RS03300 PF00376 MerR family regulatory protein AVS54_RS03305 PF01774 UreD urease accessory protein AVS54_RS03310 PF00547 Urease, gamma subunit AVS54_RS03315 PF04955 HupE / UreJ protein AVS54_RS03320 PF00699 Urease beta subunit AVS54_RS03325 PF00449 Urease alpha-subunit, N-terminal domain AVS54_RS03325 PF01979 Amidohydrolase family AVS54_RS03330 PF02814 UreE urease accessory protein, N-terminal domain AVS54_RS03330 PF05194 UreE urease accessory protein, C-terminal domain AVS54_RS03335 PF01730 UreF AVS54_RS03340 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVS54_RS03350 PF07171 MlrC C-terminus AVS54_RS03350 PF07364 Metallopeptidase family M81 AVS54_RS03360 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS03365 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS03370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS03380 PF00202 Aminotransferase class-III AVS54_RS03385 PF00155 Aminotransferase class I and II AVS54_RS03385 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS03390 PF00186 Dihydrofolate reductase AVS54_RS03395 PF00303 Thymidylate synthase AVS54_RS03405 PF03232 Ubiquinone biosynthesis protein COQ7 AVS54_RS03410 PF00953 Glycosyl transferase family 4 AVS54_RS03415 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AVS54_RS03415 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AVS54_RS03415 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AVS54_RS03420 PF01370 NAD dependent epimerase/dehydratase family AVS54_RS03425 PF03023 Lipid II flippase MurJ AVS54_RS03430 PF00534 Glycosyl transferases group 1 AVS54_RS03430 PF13439 Glycosyltransferase Family 4 AVS54_RS03435 PF13537 Glutamine amidotransferase domain AVS54_RS03435 PF00733 Asparagine synthase AVS54_RS03440 PF00534 Glycosyl transferases group 1 AVS54_RS03440 PF13439 Glycosyltransferase Family 4 AVS54_RS03445 PF00534 Glycosyl transferases group 1 AVS54_RS03445 PF13439 Glycosyltransferase Family 4 AVS54_RS03450 PF13477 Glycosyl transferase 4-like AVS54_RS03450 PF00534 Glycosyl transferases group 1 AVS54_RS03455 PF00342 Phosphoglucose isomerase AVS54_RS03460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVS54_RS03460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVS54_RS03460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVS54_RS03460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVS54_RS03470 PF02913 FAD linked oxidases, C-terminal domain AVS54_RS03470 PF01565 FAD binding domain AVS54_RS03475 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS03475 PF00072 Response regulator receiver domain AVS54_RS03480 PF08521 Two-component sensor kinase N-terminal AVS54_RS03480 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS03480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS03485 PF00884 Sulfatase AVS54_RS03495 PF04209 homogentisate 1,2-dioxygenase AVS54_RS03500 PF03466 LysR substrate binding domain AVS54_RS03500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS03510 PF01494 FAD binding domain AVS54_RS03520 PF06827 Zinc finger found in FPG and IleRS AVS54_RS03520 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AVS54_RS03520 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AVS54_RS03530 PF03550 Outer membrane lipoprotein LolB AVS54_RS03535 PF08544 GHMP kinases C terminal AVS54_RS03535 PF00288 GHMP kinases N terminal domain AVS54_RS03545 PF14572 Phosphoribosyl synthetase-associated domain AVS54_RS03545 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AVS54_RS03550 PF14693 Ribosomal protein TL5, C-terminal domain AVS54_RS03550 PF01386 Ribosomal L25p family AVS54_RS03555 PF01195 Peptidyl-tRNA hydrolase AVS54_RS03565 PF01926 50S ribosome-binding GTPase AVS54_RS03565 PF06071 Protein of unknown function (DUF933) AVS54_RS03570 PF13356 Arm DNA-binding domain AVS54_RS03570 PF00589 Phage integrase family AVS54_RS03590 PF01555 DNA methylase AVS54_RS03595 PF13175 AAA ATPase domain AVS54_RS03630 PF13361 UvrD-like helicase C-terminal domain AVS54_RS03630 PF00580 UvrD/REP helicase N-terminal domain AVS54_RS03650 PF12951 Passenger-associated-transport-repeat AVS54_RS03660 PF00072 Response regulator receiver domain AVS54_RS03660 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS03675 PF17938 Tetracyclin repressor-like, C-terminal domain AVS54_RS03675 PF00440 Bacterial regulatory proteins, tetR family AVS54_RS03705 PF01266 FAD dependent oxidoreductase AVS54_RS03720 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS03730 PF01810 LysE type translocator AVS54_RS03775 PF00561 alpha/beta hydrolase fold AVS54_RS03785 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS03790 PF00005 ABC transporter AVS54_RS03790 PF03459 TOBE domain AVS54_RS03795 PF13091 PLD-like domain AVS54_RS03805 PF03167 Uracil DNA glycosylase superfamily AVS54_RS03810 PF00270 DEAD/DEAH box helicase AVS54_RS03810 PF00271 Helicase conserved C-terminal domain AVS54_RS03820 PF12627 Probable RNA and SrmB- binding site of polymerase A AVS54_RS03820 PF01743 Poly A polymerase head domain AVS54_RS03825 PF01464 Transglycosylase SLT domain AVS54_RS03825 PF14718 Soluble lytic murein transglycosylase L domain AVS54_RS03835 PF07690 Major Facilitator Superfamily AVS54_RS03835 PF00083 Sugar (and other) transporter AVS54_RS03840 PF00850 Histone deacetylase domain AVS54_RS03845 PF03466 LysR substrate binding domain AVS54_RS03845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS03855 PF02219 Methylenetetrahydrofolate reductase AVS54_RS03860 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AVS54_RS03865 PF05221 S-adenosyl-L-homocysteine hydrolase AVS54_RS03865 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AVS54_RS03870 PF00534 Glycosyl transferases group 1 AVS54_RS03870 PF13439 Glycosyltransferase Family 4 AVS54_RS03880 PF00438 S-adenosylmethionine synthetase, N-terminal domain AVS54_RS03880 PF02773 S-adenosylmethionine synthetase, C-terminal domain AVS54_RS03880 PF02772 S-adenosylmethionine synthetase, central domain AVS54_RS03890 PF03279 Bacterial lipid A biosynthesis acyltransferase AVS54_RS03895 PF01678 Diaminopimelate epimerase AVS54_RS03905 PF02899 Phage integrase, N-terminal SAM-like domain AVS54_RS03905 PF00589 Phage integrase family AVS54_RS03910 PF00593 TonB dependent receptor AVS54_RS03910 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS03915 PF03824 High-affinity nickel-transport protein AVS54_RS03925 PF01297 Zinc-uptake complex component A periplasmic AVS54_RS03930 PF00950 ABC 3 transport family AVS54_RS03935 PF00005 ABC transporter AVS54_RS03945 PF01475 Ferric uptake regulator family AVS54_RS03950 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVS54_RS03950 PF07683 Cobalamin synthesis protein cobW C-terminal domain AVS54_RS03955 PF01258 Prokaryotic dksA/traR C4-type zinc finger AVS54_RS03960 PF00227 Proteasome subunit AVS54_RS03965 PF10431 C-terminal, D2-small domain, of ClpB protein AVS54_RS03965 PF00004 ATPase family associated with various cellular activities (AAA) AVS54_RS03965 PF07724 AAA domain (Cdc48 subfamily) AVS54_RS03975 PF01923 Cobalamin adenosyltransferase AVS54_RS03985 PF02525 Flavodoxin-like fold AVS54_RS03990 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVS54_RS03990 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVS54_RS04000 PF01970 Tripartite tricarboxylate transporter TctA family AVS54_RS04040 PF01790 Prolipoprotein diacylglyceryl transferase AVS54_RS04045 PF00920 Dehydratase family AVS54_RS04050 PF00034 Cytochrome c AVS54_RS04055 PF01625 Peptide methionine sulfoxide reductase AVS54_RS04060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVS54_RS04065 PF01037 Lrp/AsnC ligand binding domain AVS54_RS04105 PF07687 Peptidase dimerisation domain AVS54_RS04105 PF01546 Peptidase family M20/M25/M40 AVS54_RS04110 PF01979 Amidohydrolase family AVS54_RS04115 PF12848 ABC transporter AVS54_RS04115 PF16326 ABC transporter C-terminal domain AVS54_RS04115 PF00005 ABC transporter AVS54_RS04125 PF02381 MraZ protein, putative antitoxin-like AVS54_RS04130 PF01795 MraW methylase family AVS54_RS04135 PF04999 Cell division protein FtsL AVS54_RS04140 PF00905 Penicillin binding protein transpeptidase domain AVS54_RS04140 PF03717 Penicillin-binding Protein dimerisation domain AVS54_RS04145 PF02875 Mur ligase family, glutamate ligase domain AVS54_RS04145 PF08245 Mur ligase middle domain AVS54_RS04150 PF00953 Glycosyl transferase family 4 AVS54_RS04155 PF02875 Mur ligase family, glutamate ligase domain AVS54_RS04155 PF08245 Mur ligase middle domain AVS54_RS04160 PF01098 Cell cycle protein AVS54_RS04165 PF03033 Glycosyltransferase family 28 N-terminal domain AVS54_RS04165 PF04101 Glycosyltransferase family 28 C-terminal domain AVS54_RS04170 PF01225 Mur ligase family, catalytic domain AVS54_RS04170 PF02875 Mur ligase family, glutamate ligase domain AVS54_RS04170 PF08245 Mur ligase middle domain AVS54_RS04175 PF01820 D-ala D-ala ligase N-terminus AVS54_RS04175 PF07478 D-ala D-ala ligase C-terminus AVS54_RS04180 PF08478 POTRA domain, FtsQ-type AVS54_RS04180 PF03799 Cell division protein FtsQ AVS54_RS04185 PF02491 SHS2 domain inserted in FTSA AVS54_RS04190 PF00091 Tubulin/FtsZ family, GTPase domain AVS54_RS04190 PF12327 FtsZ family, C-terminal domain AVS54_RS04195 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AVS54_RS04205 PF01476 LysM domain AVS54_RS04205 PF08525 Opacity-associated protein A N-terminal motif AVS54_RS04205 PF01551 Peptidase family M23 AVS54_RS04210 PF01043 SecA preprotein cross-linking domain AVS54_RS04210 PF07517 SecA DEAD-like domain AVS54_RS04210 PF02810 SEC-C motif AVS54_RS04210 PF07516 SecA Wing and Scaffold domain AVS54_RS04220 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS04230 PF00106 short chain dehydrogenase AVS54_RS04235 PF01266 FAD dependent oxidoreductase AVS54_RS04240 PF01037 Lrp/AsnC ligand binding domain AVS54_RS04250 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP AVS54_RS04260 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AVS54_RS04260 PF08501 Shikimate dehydrogenase substrate binding domain AVS54_RS04260 PF01488 Shikimate / quinate 5-dehydrogenase AVS54_RS04270 PF00773 RNB domain AVS54_RS04275 PF05728 Uncharacterised protein family (UPF0227) AVS54_RS04280 PF08245 Mur ligase middle domain AVS54_RS04280 PF02875 Mur ligase family, glutamate ligase domain AVS54_RS04280 PF01225 Mur ligase family, catalytic domain AVS54_RS04285 PF08534 Redoxin AVS54_RS04290 PF01220 Dehydroquinase class II AVS54_RS04295 PF00364 Biotin-requiring enzyme AVS54_RS04300 PF02785 Biotin carboxylase C-terminal domain AVS54_RS04300 PF00289 Biotin carboxylase, N-terminal domain AVS54_RS04300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVS54_RS04315 PF00294 pfkB family carbohydrate kinase AVS54_RS04340 PF03062 MBOAT, membrane-bound O-acyltransferase family AVS54_RS04345 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS04345 PF00501 AMP-binding enzyme AVS54_RS04360 PF00268 Ribonucleotide reductase, small chain AVS54_RS04365 PF02867 Ribonucleotide reductase, barrel domain AVS54_RS04365 PF03477 ATP cone domain AVS54_RS04365 PF00317 Ribonucleotide reductase, all-alpha domain AVS54_RS04380 PF01037 Lrp/AsnC ligand binding domain AVS54_RS04395 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVS54_RS04400 PF13380 CoA binding domain AVS54_RS04400 PF00583 Acetyltransferase (GNAT) family AVS54_RS04400 PF13607 Succinyl-CoA ligase like flavodoxin domain AVS54_RS04415 PF07729 FCD domain AVS54_RS04415 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS04425 PF03880 DbpA RNA binding domain AVS54_RS04425 PF00271 Helicase conserved C-terminal domain AVS54_RS04425 PF00270 DEAD/DEAH box helicase AVS54_RS04430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVS54_RS04435 PF00857 Isochorismatase family AVS54_RS04440 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS04445 PF00005 ABC transporter AVS54_RS04455 PF02230 Phospholipase/Carboxylesterase AVS54_RS04460 PF04751 Protein of unknown function (DUF615) AVS54_RS04465 PF01523 Putative modulator of DNA gyrase AVS54_RS04470 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS04475 PF00572 Ribosomal protein L13 AVS54_RS04480 PF00380 Ribosomal protein S9/S16 AVS54_RS04485 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVS54_RS04485 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVS54_RS04495 PF01521 Iron-sulphur cluster biosynthesis AVS54_RS04500 PF03702 Anhydro-N-acetylmuramic acid kinase AVS54_RS04505 PF01551 Peptidase family M23 AVS54_RS04505 PF08460 Bacterial SH3 domain AVS54_RS04515 PF00579 tRNA synthetases class I (W and Y) AVS54_RS04515 PF01479 S4 domain AVS54_RS04525 PF00464 Serine hydroxymethyltransferase AVS54_RS04530 PF03477 ATP cone domain AVS54_RS04545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVS54_RS04545 PF01872 RibD C-terminal domain AVS54_RS04560 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS04560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS04560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS04560 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS04560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS04560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS04570 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS04575 PF03466 LysR substrate binding domain AVS54_RS04575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS04580 PF02515 CoA-transferase family III AVS54_RS04600 PF02678 Pirin AVS54_RS04600 PF05726 Pirin C-terminal cupin domain AVS54_RS04615 PF00072 Response regulator receiver domain AVS54_RS04620 PF06481 COX Aromatic Rich Motif AVS54_RS04620 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AVS54_RS04625 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVS54_RS04630 PF00510 Cytochrome c oxidase subunit III AVS54_RS04635 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AVS54_RS04640 PF01022 Bacterial regulatory protein, arsR family AVS54_RS04660 PF05114 Protein of unknown function (DUF692) AVS54_RS04675 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS04675 PF00593 TonB dependent receptor AVS54_RS04690 PF01476 LysM domain AVS54_RS04690 PF01551 Peptidase family M23 AVS54_RS04705 PF04461 Protein of unknown function (DUF520) AVS54_RS04715 PF08281 Sigma-70, region 4 AVS54_RS04715 PF04542 Sigma-70 region 2 AVS54_RS04735 PF00795 Carbon-nitrogen hydrolase AVS54_RS04740 PF01523 Putative modulator of DNA gyrase AVS54_RS04745 PF00793 DAHP synthetase I family AVS54_RS04750 PF05860 haemagglutination activity domain AVS54_RS04750 PF05594 Haemagluttinin repeat AVS54_RS04750 PF13332 Hemagglutinin repeat AVS54_RS04750 PF13018 Extended Signal Peptide of Type V secretion system AVS54_RS04750 PF05594 Haemagluttinin repeat AVS54_RS04750 PF13018 Extended Signal Peptide of Type V secretion system AVS54_RS04750 PF13332 Hemagglutinin repeat AVS54_RS04750 PF05860 haemagglutination activity domain AVS54_RS04755 PF01565 FAD binding domain AVS54_RS04755 PF02913 FAD linked oxidases, C-terminal domain AVS54_RS04760 PF01565 FAD binding domain AVS54_RS04760 PF02913 FAD linked oxidases, C-terminal domain AVS54_RS04765 PF01565 FAD binding domain AVS54_RS04770 PF13183 4Fe-4S dicluster domain AVS54_RS04770 PF02754 Cysteine-rich domain AVS54_RS04775 PF00756 Putative esterase AVS54_RS04780 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS04780 PF00593 TonB dependent receptor AVS54_RS04790 PF02233 NAD(P) transhydrogenase beta subunit AVS54_RS04795 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AVS54_RS04800 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AVS54_RS04805 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AVS54_RS04805 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AVS54_RS04815 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS04820 PF03466 LysR substrate binding domain AVS54_RS04820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS04830 PF01925 Sulfite exporter TauE/SafE AVS54_RS04835 PF00043 Glutathione S-transferase, C-terminal domain AVS54_RS04835 PF13417 Glutathione S-transferase, N-terminal domain AVS54_RS04840 PF08328 Adenylosuccinate lyase C-terminal AVS54_RS04840 PF00206 Lyase AVS54_RS04845 PF01322 Cytochrome C' AVS54_RS04865 PF01594 AI-2E family transporter AVS54_RS04875 PF07729 FCD domain AVS54_RS04875 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS04885 PF01425 Amidase AVS54_RS04890 PF02515 CoA-transferase family III AVS54_RS04895 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS04910 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS04915 PF00005 ABC transporter AVS54_RS04930 PF01614 Bacterial transcriptional regulator AVS54_RS04930 PF09339 IclR helix-turn-helix domain AVS54_RS04940 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS04940 PF00501 AMP-binding enzyme AVS54_RS04945 PF01042 Endoribonuclease L-PSP AVS54_RS04950 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS04965 PF00005 ABC transporter AVS54_RS04970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVS54_RS04985 PF03466 LysR substrate binding domain AVS54_RS04985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS04995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVS54_RS05000 PF07690 Major Facilitator Superfamily AVS54_RS05005 PF03466 LysR substrate binding domain AVS54_RS05005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS05020 PF01425 Amidase AVS54_RS05025 PF00677 Lumazine binding domain AVS54_RS05030 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS05035 PF01037 Lrp/AsnC ligand binding domain AVS54_RS05035 PF13404 AsnC-type helix-turn-helix domain AVS54_RS05045 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS05045 PF00501 AMP-binding enzyme AVS54_RS05055 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS05060 PF00005 ABC transporter AVS54_RS05075 PF00107 Zinc-binding dehydrogenase AVS54_RS05075 PF08240 Alcohol dehydrogenase GroES-like domain AVS54_RS05095 PF00403 Heavy-metal-associated domain AVS54_RS05100 PF01966 HD domain AVS54_RS05105 PF00155 Aminotransferase class I and II AVS54_RS05110 PF03466 LysR substrate binding domain AVS54_RS05110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS05120 PF00083 Sugar (and other) transporter AVS54_RS05140 PF13609 Gram-negative porin AVS54_RS05145 PF02548 Ketopantoate hydroxymethyltransferase AVS54_RS05150 PF03466 LysR substrate binding domain AVS54_RS05150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS05215 PF00440 Bacterial regulatory proteins, tetR family AVS54_RS05225 PF05170 AsmA family AVS54_RS05230 PF03352 Methyladenine glycosylase AVS54_RS05235 PF00376 MerR family regulatory protein AVS54_RS05235 PF09278 MerR, DNA binding AVS54_RS05250 PF01547 Bacterial extracellular solute-binding protein AVS54_RS05260 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS05260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVS54_RS05265 PF08402 TOBE domain AVS54_RS05265 PF00005 ABC transporter AVS54_RS05270 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS05275 PF14785 Maltose transport system permease protein MalF P2 domain AVS54_RS05275 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS05295 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS05300 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS05300 PF07729 FCD domain AVS54_RS05330 PF00465 Iron-containing alcohol dehydrogenase AVS54_RS05345 PF03180 NLPA lipoprotein AVS54_RS05350 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS05355 PF00005 ABC transporter AVS54_RS05355 PF09383 NIL domain AVS54_RS05360 PF01055 Glycosyl hydrolases family 31 AVS54_RS05360 PF13802 Galactose mutarotase-like AVS54_RS05370 PF00459 Inositol monophosphatase family AVS54_RS05385 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS05385 PF00501 AMP-binding enzyme AVS54_RS05390 PF07687 Peptidase dimerisation domain AVS54_RS05390 PF01546 Peptidase family M20/M25/M40 AVS54_RS05395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS05395 PF03466 LysR substrate binding domain AVS54_RS05400 PF03601 Conserved hypothetical protein 698 AVS54_RS05405 PF03061 Thioesterase superfamily AVS54_RS05410 PF00571 CBS domain AVS54_RS05410 PF03448 MgtE intracellular N domain AVS54_RS05410 PF01769 Divalent cation transporter AVS54_RS05435 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS05445 PF02609 Exonuclease VII small subunit AVS54_RS05450 PF00348 Polyprenyl synthetase AVS54_RS05455 PF02780 Transketolase, C-terminal domain AVS54_RS05455 PF02779 Transketolase, pyrimidine binding domain AVS54_RS05455 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AVS54_RS05460 PF02649 Type I GTP cyclohydrolase folE2 AVS54_RS05465 PF01250 Ribosomal protein S6 AVS54_RS05475 PF01084 Ribosomal protein S18 AVS54_RS05480 PF01281 Ribosomal protein L9, N-terminal domain AVS54_RS05480 PF03948 Ribosomal protein L9, C-terminal domain AVS54_RS05490 PF03796 DnaB-like helicase C terminal domain AVS54_RS05490 PF00772 DnaB-like helicase N terminal domain AVS54_RS05495 PF13593 SBF-like CPA transporter family (DUF4137) AVS54_RS05500 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AVS54_RS05505 PF13638 PIN domain AVS54_RS05505 PF02562 PhoH-like protein AVS54_RS05510 PF00578 AhpC/TSA family AVS54_RS05515 PF04430 Protein of unknown function (DUF498/DUF598) AVS54_RS05520 PF00155 Aminotransferase class I and II AVS54_RS05525 PF01842 ACT domain AVS54_RS05525 PF03447 Homoserine dehydrogenase, NAD binding domain AVS54_RS05525 PF00742 Homoserine dehydrogenase AVS54_RS05530 PF14821 Threonine synthase N terminus AVS54_RS05530 PF00291 Pyridoxal-phosphate dependent enzyme AVS54_RS05545 PF02615 Malate/L-lactate dehydrogenase AVS54_RS05555 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS05570 PF03328 HpcH/HpaI aldolase/citrate lyase family AVS54_RS05575 PF01649 Ribosomal protein S20 AVS54_RS05585 PF03023 Lipid II flippase MurJ AVS54_RS05590 PF00106 short chain dehydrogenase AVS54_RS05595 PF05191 Adenylate kinase, active site lid AVS54_RS05600 PF02348 Cytidylyltransferase AVS54_RS05605 PF03966 Trm112p-like protein AVS54_RS05610 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AVS54_RS05615 PF02472 Biopolymer transport protein ExbD/TolR AVS54_RS05620 PF01618 MotA/TolQ/ExbB proton channel family AVS54_RS05630 PF02601 Exonuclease VII, large subunit AVS54_RS05630 PF13742 OB-fold nucleic acid binding domain AVS54_RS05635 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AVS54_RS05635 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AVS54_RS05640 PF00654 Voltage gated chloride channel AVS54_RS05645 PF00108 Thiolase, N-terminal domain AVS54_RS05645 PF02803 Thiolase, C-terminal domain AVS54_RS05655 PF00313 'Cold-shock' DNA-binding domain AVS54_RS05660 PF02617 ATP-dependent Clp protease adaptor protein ClpS AVS54_RS05665 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AVS54_RS05665 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AVS54_RS05665 PF01835 MG2 domain AVS54_RS05665 PF00207 Alpha-2-macroglobulin family AVS54_RS05665 PF07703 Alpha-2-macroglobulin bait region domain AVS54_RS05665 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AVS54_RS05665 PF17962 Bacterial macroglobulin domain 6 AVS54_RS05665 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AVS54_RS05670 PF00905 Penicillin binding protein transpeptidase domain AVS54_RS05670 PF06832 Penicillin-Binding Protein C-terminus Family AVS54_RS05670 PF00912 Transglycosylase AVS54_RS05675 PF02861 Clp amino terminal domain, pathogenicity island component AVS54_RS05675 PF17871 AAA lid domain AVS54_RS05675 PF07724 AAA domain (Cdc48 subfamily) AVS54_RS05675 PF00004 ATPase family associated with various cellular activities (AAA) AVS54_RS05675 PF10431 C-terminal, D2-small domain, of ClpB protein AVS54_RS05680 PF04403 Paraquat-inducible protein A AVS54_RS05685 PF02470 MlaD protein AVS54_RS05695 PF00171 Aldehyde dehydrogenase family AVS54_RS05695 PF14850 DNA-binding domain of Proline dehydrogenase AVS54_RS05695 PF01619 Proline dehydrogenase AVS54_RS05695 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AVS54_RS05705 PF13458 Periplasmic binding protein AVS54_RS05710 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS05715 PF11862 Domain of unknown function (DUF3382) AVS54_RS05715 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS05720 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVS54_RS05720 PF00005 ABC transporter AVS54_RS05725 PF00005 ABC transporter AVS54_RS05730 PF07690 Major Facilitator Superfamily AVS54_RS05735 PF00440 Bacterial regulatory proteins, tetR family AVS54_RS05745 PF03212 Pertactin AVS54_RS05745 PF03797 Autotransporter beta-domain AVS54_RS05755 PF00543 Nitrogen regulatory protein P-II AVS54_RS05760 PF04380 Membrane fusogenic activity AVS54_RS05775 PF07690 Major Facilitator Superfamily AVS54_RS05775 PF00083 Sugar (and other) transporter AVS54_RS05785 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVS54_RS05790 PF00510 Cytochrome c oxidase subunit III AVS54_RS05795 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AVS54_RS05800 PF02104 SURF1 family AVS54_RS05825 PF13411 MerR HTH family regulatory protein AVS54_RS05830 PF00403 Heavy-metal-associated domain AVS54_RS05850 PF06968 Biotin and Thiamin Synthesis associated domain AVS54_RS05850 PF04055 Radical SAM superfamily AVS54_RS05865 PF08534 Redoxin AVS54_RS05875 PF01738 Dienelactone hydrolase family AVS54_RS05885 PF01967 MoaC family AVS54_RS05895 PF02391 MoaE protein AVS54_RS05900 PF00994 Probable molybdopterin binding domain AVS54_RS05905 PF00994 Probable molybdopterin binding domain AVS54_RS05905 PF03453 MoeA N-terminal region (domain I and II) AVS54_RS05905 PF03454 MoeA C-terminal region (domain IV) AVS54_RS05910 PF06463 Molybdenum Cofactor Synthesis C AVS54_RS05910 PF04055 Radical SAM superfamily AVS54_RS05930 PF14698 Argininosuccinate lyase C-terminal AVS54_RS05930 PF00206 Lyase AVS54_RS05935 PF00924 Mechanosensitive ion channel AVS54_RS05940 PF02540 NAD synthase AVS54_RS05940 PF00795 Carbon-nitrogen hydrolase AVS54_RS05945 PF00543 Nitrogen regulatory protein P-II AVS54_RS05970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS05970 PF03466 LysR substrate binding domain AVS54_RS05980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS05985 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS05990 PF12911 N-terminal TM domain of oligopeptide transport permease C AVS54_RS05990 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS05995 PF03193 RsgA GTPase AVS54_RS06000 PF01435 Peptidase family M48 AVS54_RS06005 PF00929 Exonuclease AVS54_RS06010 PF03853 YjeF-related protein N-terminus AVS54_RS06015 PF07848 PaaX-like protein AVS54_RS06015 PF08223 PaaX-like protein C-terminal domain AVS54_RS06020 PF05138 Phenylacetic acid catabolic protein AVS54_RS06025 PF06243 Phenylacetic acid degradation B AVS54_RS06030 PF05138 Phenylacetic acid catabolic protein AVS54_RS06035 PF01883 Iron-sulfur cluster assembly protein AVS54_RS06040 PF00111 2Fe-2S iron-sulfur cluster binding domain AVS54_RS06040 PF00970 Oxidoreductase FAD-binding domain AVS54_RS06040 PF00175 Oxidoreductase NAD-binding domain AVS54_RS06050 PF00171 Aldehyde dehydrogenase family AVS54_RS06055 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS06060 PF03061 Thioesterase superfamily AVS54_RS06065 PF14535 AMP-binding enzyme C-terminal domain AVS54_RS06065 PF00501 AMP-binding enzyme AVS54_RS06070 PF16970 Type-1 fimbrial protein, A AVS54_RS06090 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS06095 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVS54_RS06095 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AVS54_RS06100 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AVS54_RS06105 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AVS54_RS06105 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AVS54_RS06105 PF02769 AIR synthase related protein, C-terminal domain AVS54_RS06110 PF05860 haemagglutination activity domain AVS54_RS06110 PF13018 Extended Signal Peptide of Type V secretion system AVS54_RS06110 PF13332 Hemagglutinin repeat AVS54_RS06110 PF05594 Haemagluttinin repeat AVS54_RS06135 PF00596 Class II Aldolase and Adducin N-terminal domain AVS54_RS06140 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS06145 PF01242 6-pyruvoyl tetrahydropterin synthase AVS54_RS06155 PF00472 RF-1 domain AVS54_RS06175 PF00701 Dihydrodipicolinate synthetase family AVS54_RS06180 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS06205 PF00890 FAD binding domain AVS54_RS06205 PF14537 Cytochrome c3 AVS54_RS06210 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS06225 PF01266 FAD dependent oxidoreductase AVS54_RS06225 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AVS54_RS06230 PF00455 DeoR C terminal sensor domain AVS54_RS06230 PF08220 DeoR-like helix-turn-helix domain AVS54_RS06235 PF00005 ABC transporter AVS54_RS06235 PF17912 MalK OB fold domain AVS54_RS06240 PF17912 MalK OB fold domain AVS54_RS06240 PF00005 ABC transporter AVS54_RS06250 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS06275 PF01037 Lrp/AsnC ligand binding domain AVS54_RS06280 PF01266 FAD dependent oxidoreductase AVS54_RS06285 PF12320 Type 5 capsule protein repressor C-terminal domain AVS54_RS06285 PF00149 Calcineurin-like phosphoesterase AVS54_RS06325 PF00478 IMP dehydrogenase / GMP reductase domain AVS54_RS06325 PF00571 CBS domain AVS54_RS06330 PF00958 GMP synthase C terminal domain AVS54_RS06330 PF02540 NAD synthase AVS54_RS06330 PF00117 Glutamine amidotransferase class-I AVS54_RS06345 PF13657 HipA N-terminal domain AVS54_RS06345 PF07804 HipA-like C-terminal domain AVS54_RS06355 PF07690 Major Facilitator Superfamily AVS54_RS06370 PF01979 Amidohydrolase family AVS54_RS06380 PF00005 ABC transporter AVS54_RS06385 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS06410 PF01965 DJ-1/PfpI family AVS54_RS06420 PF00916 Sulfate permease family AVS54_RS06420 PF01740 STAS domain AVS54_RS06425 PF10996 Beta-Casp domain AVS54_RS06425 PF00753 Metallo-beta-lactamase superfamily AVS54_RS06425 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AVS54_RS06445 PF12706 Beta-lactamase superfamily domain AVS54_RS06450 PF01965 DJ-1/PfpI family AVS54_RS06450 PF12833 Helix-turn-helix domain AVS54_RS06455 PF03466 LysR substrate binding domain AVS54_RS06455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS06470 PF00107 Zinc-binding dehydrogenase AVS54_RS06470 PF08240 Alcohol dehydrogenase GroES-like domain AVS54_RS06475 PF07690 Major Facilitator Superfamily AVS54_RS06480 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS06480 PF00155 Aminotransferase class I and II AVS54_RS06490 PF01810 LysE type translocator AVS54_RS06500 PF01546 Peptidase family M20/M25/M40 AVS54_RS06500 PF07687 Peptidase dimerisation domain AVS54_RS06505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS06510 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS06515 PF12911 N-terminal TM domain of oligopeptide transport permease C AVS54_RS06515 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS06520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS06520 PF00005 ABC transporter AVS54_RS06525 PF00356 Bacterial regulatory proteins, lacI family AVS54_RS06555 PF09335 SNARE associated Golgi protein AVS54_RS06570 PF13847 Methyltransferase domain AVS54_RS06585 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS06585 PF00155 Aminotransferase class I and II AVS54_RS06595 PF00692 dUTPase AVS54_RS06610 PF01632 Ribosomal protein L35 AVS54_RS06615 PF00453 Ribosomal protein L20 AVS54_RS06620 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AVS54_RS06620 PF01409 tRNA synthetases class II core domain (F) AVS54_RS06625 PF03483 B3/4 domain AVS54_RS06625 PF03147 Ferredoxin-fold anticodon binding domain AVS54_RS06625 PF03484 tRNA synthetase B5 domain AVS54_RS06625 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AVS54_RS06625 PF01588 Putative tRNA binding domain AVS54_RS06630 PF00216 Bacterial DNA-binding protein AVS54_RS06680 PF04231 Endonuclease I AVS54_RS06700 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVS54_RS06700 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVS54_RS06705 PF04381 Putative exonuclease, RdgC AVS54_RS06715 PF02515 CoA-transferase family III AVS54_RS06720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS06720 PF03466 LysR substrate binding domain AVS54_RS06740 PF00106 short chain dehydrogenase AVS54_RS06750 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS06755 PF08402 TOBE domain AVS54_RS06755 PF00005 ABC transporter AVS54_RS06760 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVS54_RS06760 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVS54_RS06760 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS06765 PF08946 Osmosensory transporter coiled coil AVS54_RS06765 PF00083 Sugar (and other) transporter AVS54_RS06770 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS06770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS06775 PF00072 Response regulator receiver domain AVS54_RS06775 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS06780 PF00154 recA bacterial DNA recombination protein AVS54_RS06785 PF02631 RecX family AVS54_RS06790 PF03466 LysR substrate binding domain AVS54_RS06790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS06795 PF08267 Cobalamin-independent synthase, N-terminal domain AVS54_RS06795 PF01717 Cobalamin-independent synthase, Catalytic domain AVS54_RS06805 PF08442 ATP-grasp domain AVS54_RS06805 PF00549 CoA-ligase AVS54_RS06810 PF00549 CoA-ligase AVS54_RS06810 PF02629 CoA binding domain AVS54_RS06815 PF03741 Integral membrane protein TerC family AVS54_RS06820 PF03741 Integral membrane protein TerC family AVS54_RS06825 PF03900 Porphobilinogen deaminase, C-terminal domain AVS54_RS06825 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AVS54_RS06845 PF00719 Inorganic pyrophosphatase AVS54_RS06850 PF01557 Fumarylacetoacetate (FAA) hydrolase family AVS54_RS06885 PF04972 BON domain AVS54_RS06885 PF13629 Pilus formation protein N terminal region AVS54_RS06885 PF00263 Bacterial type II and III secretion system protein AVS54_RS06890 PF00437 Type II/IV secretion system protein AVS54_RS06910 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS06915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AVS54_RS06915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AVS54_RS06920 PF02615 Malate/L-lactate dehydrogenase AVS54_RS06925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS06925 PF03466 LysR substrate binding domain AVS54_RS06935 PF01266 FAD dependent oxidoreductase AVS54_RS06940 PF04267 Sarcosine oxidase, delta subunit family AVS54_RS06945 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS06945 PF17806 Sarcosine oxidase A3 domain AVS54_RS06945 PF01571 Aminomethyltransferase folate-binding domain AVS54_RS06945 PF08669 Glycine cleavage T-protein C-terminal barrel domain AVS54_RS06955 PF00551 Formyl transferase AVS54_RS06960 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS06970 PF00561 alpha/beta hydrolase fold AVS54_RS06980 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AVS54_RS06980 PF01565 FAD binding domain AVS54_RS06985 PF05173 Dihydrodipicolinate reductase, C-terminus AVS54_RS06985 PF01113 Dihydrodipicolinate reductase, N-terminus AVS54_RS06990 PF04355 SmpA / OmlA family AVS54_RS06995 PF01475 Ferric uptake regulator family AVS54_RS07000 PF02463 RecF/RecN/SMC N terminal domain AVS54_RS07005 PF01513 ATP-NAD kinase AVS54_RS07010 PF01628 HrcA protein C terminal domain AVS54_RS07010 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AVS54_RS07015 PF00762 Ferrochelatase AVS54_RS07025 PF01025 GrpE AVS54_RS07035 PF00012 Hsp70 protein AVS54_RS07040 PF01556 DnaJ C terminal domain AVS54_RS07040 PF00226 DnaJ domain AVS54_RS07040 PF00684 DnaJ central domain AVS54_RS07045 PF05193 Peptidase M16 inactive domain AVS54_RS07045 PF00675 Insulinase (Peptidase family M16) AVS54_RS07065 PF17862 AAA+ lid domain AVS54_RS07065 PF00004 ATPase family associated with various cellular activities (AAA) AVS54_RS07065 PF01434 Peptidase family M41 AVS54_RS07075 PF00034 Cytochrome c AVS54_RS07090 PF00180 Isocitrate/isopropylmalate dehydrogenase AVS54_RS07110 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS07110 PF00072 Response regulator receiver domain AVS54_RS07120 PF02669 K+-transporting ATPase, c chain AVS54_RS07130 PF03814 Potassium-transporting ATPase A subunit AVS54_RS07145 PF00474 Sodium:solute symporter family AVS54_RS07160 PF00893 Small Multidrug Resistance protein AVS54_RS07165 PF00488 MutS domain V AVS54_RS07165 PF01713 Smr domain AVS54_RS07170 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS07175 PF01580 FtsK/SpoIIIE family AVS54_RS07175 PF09397 Ftsk gamma domain AVS54_RS07175 PF17854 FtsK alpha domain AVS54_RS07175 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AVS54_RS07180 PF03548 Outer membrane lipoprotein carrier protein LolA AVS54_RS07185 PF12002 MgsA AAA+ ATPase C terminal AVS54_RS07185 PF00004 ATPase family associated with various cellular activities (AAA) AVS54_RS07185 PF16193 AAA C-terminal domain AVS54_RS07190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVS54_RS07190 PF02403 Seryl-tRNA synthetase N-terminal domain AVS54_RS07215 PF17151 Periplasmic sensor domain AVS54_RS07215 PF00990 Diguanylate cyclase, GGDEF domain AVS54_RS07230 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS07230 PF07660 Secretin and TonB N terminus short domain AVS54_RS07230 PF00593 TonB dependent receptor AVS54_RS07235 PF07690 Major Facilitator Superfamily AVS54_RS07255 PF04183 IucA / IucC family AVS54_RS07255 PF06276 Ferric iron reductase FhuF-like transporter AVS54_RS07265 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AVS54_RS07275 PF02254 TrkA-N domain AVS54_RS07275 PF00999 Sodium/hydrogen exchanger family AVS54_RS07280 PF00106 short chain dehydrogenase AVS54_RS07290 PF03883 Peroxide stress protein YaaA AVS54_RS07310 PF00990 Diguanylate cyclase, GGDEF domain AVS54_RS07320 PF06969 HemN C-terminal domain AVS54_RS07320 PF04055 Radical SAM superfamily AVS54_RS07330 PF00196 Bacterial regulatory proteins, luxR family AVS54_RS07335 PF03129 Anticodon binding domain AVS54_RS07335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVS54_RS07335 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AVS54_RS07335 PF02824 TGS domain AVS54_RS07340 PF00707 Translation initiation factor IF-3, C-terminal domain AVS54_RS07340 PF05198 Translation initiation factor IF-3, N-terminal domain AVS54_RS07345 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AVS54_RS07345 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AVS54_RS07355 PF00381 PTS HPr component phosphorylation site AVS54_RS07360 PF02896 PEP-utilising enzyme, TIM barrel domain AVS54_RS07360 PF00391 PEP-utilising enzyme, mobile domain AVS54_RS07360 PF05524 PEP-utilising enzyme, N-terminal AVS54_RS07370 PF02566 OsmC-like protein AVS54_RS07375 PF02423 Ornithine cyclodeaminase/mu-crystallin family AVS54_RS07385 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS07390 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS07395 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS07400 PF00005 ABC transporter AVS54_RS07415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVS54_RS07415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVS54_RS07425 PF02293 AmiS/UreI family transporter AVS54_RS07430 PF03069 Acetamidase/Formamidase family AVS54_RS07445 PF01116 Fructose-bisphosphate aldolase class-II AVS54_RS07455 PF01259 SAICAR synthetase AVS54_RS07460 PF15723 Motility quorum-sensing regulator, toxin of MqsA AVS54_RS07465 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA AVS54_RS07475 PF02600 Disulfide bond formation protein DsbB AVS54_RS07480 PF00731 AIR carboxylase AVS54_RS07485 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AVS54_RS07485 PF02222 ATP-grasp domain AVS54_RS07490 PF03481 Putative GTP-binding controlling metal-binding AVS54_RS07490 PF01300 Telomere recombination AVS54_RS07495 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS07500 PF09339 IclR helix-turn-helix domain AVS54_RS07500 PF01614 Bacterial transcriptional regulator AVS54_RS07505 PF00491 Arginase family AVS54_RS07510 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS07515 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS07520 PF00005 ABC transporter AVS54_RS07525 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVS54_RS07525 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVS54_RS07535 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS07535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS07535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS07540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVS54_RS07540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVS54_RS07540 PF00205 Thiamine pyrophosphate enzyme, central domain AVS54_RS07545 PF03466 LysR substrate binding domain AVS54_RS07545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS07550 PF02899 Phage integrase, N-terminal SAM-like domain AVS54_RS07550 PF00589 Phage integrase family AVS54_RS07555 PF04073 Aminoacyl-tRNA editing domain AVS54_RS07560 PF01174 SNO glutamine amidotransferase family AVS54_RS07575 PF00768 D-alanyl-D-alanine carboxypeptidase AVS54_RS07585 PF07690 Major Facilitator Superfamily AVS54_RS07595 PF00580 UvrD/REP helicase N-terminal domain AVS54_RS07595 PF13361 UvrD-like helicase C-terminal domain AVS54_RS07595 PF12705 PD-(D/E)XK nuclease superfamily AVS54_RS07610 PF12170 DNA polymerase III tau subunit V interacting with alpha AVS54_RS07610 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AVS54_RS07610 PF12169 DNA polymerase III subunits gamma and tau domain III AVS54_RS07615 PF02575 YbaB/EbfC DNA-binding family AVS54_RS07620 PF13662 Toprim domain AVS54_RS07620 PF02132 RecR protein AVS54_RS07640 PF04228 Putative neutral zinc metallopeptidase AVS54_RS07645 PF01300 Telomere recombination AVS54_RS07685 PF03358 NADPH-dependent FMN reductase AVS54_RS07690 PF07311 Dodecin AVS54_RS07695 PF01624 MutS domain I AVS54_RS07695 PF05190 MutS family domain IV AVS54_RS07695 PF05188 MutS domain II AVS54_RS07695 PF05192 MutS domain III AVS54_RS07695 PF00488 MutS domain V AVS54_RS07700 PF08007 Cupin superfamily protein AVS54_RS07705 PF16970 Type-1 fimbrial protein, A AVS54_RS07710 PF06804 NlpB/DapX lipoprotein AVS54_RS07715 PF00701 Dihydrodipicolinate synthetase family AVS54_RS07720 PF17820 PDZ domain AVS54_RS07720 PF02163 Peptidase family M50 AVS54_RS07735 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS07740 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS07745 PF00005 ABC transporter AVS54_RS07750 PF04607 Region found in RelA / SpoT proteins AVS54_RS07750 PF02824 TGS domain AVS54_RS07750 PF13291 ACT domain AVS54_RS07755 PF01192 RNA polymerase Rpb6 AVS54_RS07760 PF00625 Guanylate kinase AVS54_RS07765 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVS54_RS07770 PF00034 Cytochrome c AVS54_RS07780 PF00877 NlpC/P60 family AVS54_RS07785 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AVS54_RS07785 PF01048 Phosphorylase superfamily AVS54_RS07805 PF03755 YicC-like family, N-terminal region AVS54_RS07805 PF08340 Domain of unknown function (DUF1732) AVS54_RS07810 PF01138 3' exoribonuclease family, domain 1 AVS54_RS07810 PF03725 3' exoribonuclease family, domain 2 AVS54_RS07820 PF03466 LysR substrate binding domain AVS54_RS07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS07825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVS54_RS07825 PF02203 Tar ligand binding domain homologue AVS54_RS07825 PF00672 HAMP domain AVS54_RS07830 PF00672 HAMP domain AVS54_RS07830 PF00990 Diguanylate cyclase, GGDEF domain AVS54_RS07830 PF00563 EAL domain AVS54_RS07830 PF17154 Gammaproteobacterial periplasmic sensor domain AVS54_RS07835 PF01725 Ham1 family AVS54_RS07845 PF06969 HemN C-terminal domain AVS54_RS07845 PF04055 Radical SAM superfamily AVS54_RS07850 PF00120 Glutamine synthetase, catalytic domain AVS54_RS07850 PF03951 Glutamine synthetase, beta-Grasp domain AVS54_RS07855 PF00989 PAS fold AVS54_RS07855 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS07855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS07860 PF02954 Bacterial regulatory protein, Fis family AVS54_RS07860 PF00072 Response regulator receiver domain AVS54_RS07860 PF00158 Sigma-54 interaction domain AVS54_RS07865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS07865 PF03466 LysR substrate binding domain AVS54_RS07870 PF17954 Quercetinase C-terminal cupin domain AVS54_RS07870 PF02678 Pirin AVS54_RS07875 PF05726 Pirin C-terminal cupin domain AVS54_RS07875 PF02678 Pirin AVS54_RS07885 PF00005 ABC transporter AVS54_RS07885 PF08402 TOBE domain AVS54_RS07890 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS07900 PF00970 Oxidoreductase FAD-binding domain AVS54_RS07900 PF00175 Oxidoreductase NAD-binding domain AVS54_RS07905 PF03466 LysR substrate binding domain AVS54_RS07905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS07915 PF00248 Aldo/keto reductase family AVS54_RS07925 PF01042 Endoribonuclease L-PSP AVS54_RS07930 PF17191 RecG wedge domain AVS54_RS07930 PF00271 Helicase conserved C-terminal domain AVS54_RS07930 PF00270 DEAD/DEAH box helicase AVS54_RS07935 PF03466 LysR substrate binding domain AVS54_RS07935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS07940 PF03466 LysR substrate binding domain AVS54_RS07940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS07945 PF00171 Aldehyde dehydrogenase family AVS54_RS07950 PF00210 Ferritin-like domain AVS54_RS07970 PF00535 Glycosyl transferase family 2 AVS54_RS07980 PF00005 ABC transporter AVS54_RS07990 PF00534 Glycosyl transferases group 1 AVS54_RS08000 PF02563 Polysaccharide biosynthesis/export protein AVS54_RS08005 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AVS54_RS08005 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AVS54_RS08005 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AVS54_RS08010 PF01370 NAD dependent epimerase/dehydratase family AVS54_RS08015 PF05159 Capsule polysaccharide biosynthesis protein AVS54_RS08020 PF05159 Capsule polysaccharide biosynthesis protein AVS54_RS08030 PF00106 short chain dehydrogenase AVS54_RS08045 PF14759 Reductase C-terminal AVS54_RS08045 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS08055 PF00005 ABC transporter AVS54_RS08060 PF00005 ABC transporter AVS54_RS08060 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVS54_RS08065 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS08065 PF11862 Domain of unknown function (DUF3382) AVS54_RS08075 PF03741 Integral membrane protein TerC family AVS54_RS08085 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS08100 PF07726 ATPase family associated with various cellular activities (AAA) AVS54_RS08100 PF17863 AAA lid domain AVS54_RS08135 PF00884 Sulfatase AVS54_RS08160 PF00072 Response regulator receiver domain AVS54_RS08160 PF00196 Bacterial regulatory proteins, luxR family AVS54_RS08165 PF03797 Autotransporter beta-domain AVS54_RS08165 PF12951 Passenger-associated-transport-repeat AVS54_RS08165 PF00082 Subtilase family AVS54_RS08170 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA AVS54_RS08175 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system AVS54_RS08180 PF00043 Glutathione S-transferase, C-terminal domain AVS54_RS08180 PF02798 Glutathione S-transferase, N-terminal domain AVS54_RS08185 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AVS54_RS08190 PF03466 LysR substrate binding domain AVS54_RS08190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS08195 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS08205 PF01070 FMN-dependent dehydrogenase AVS54_RS08210 PF01557 Fumarylacetoacetate (FAA) hydrolase family AVS54_RS08225 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS08230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS08230 PF03466 LysR substrate binding domain AVS54_RS08235 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS08260 PF03358 NADPH-dependent FMN reductase AVS54_RS08280 PF07969 Amidohydrolase family AVS54_RS08285 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS08295 PF03466 LysR substrate binding domain AVS54_RS08310 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS08315 PF13244 Domain of unknown function (DUF4040) AVS54_RS08315 PF00361 Proton-conducting membrane transporter AVS54_RS08315 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AVS54_RS08315 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AVS54_RS08320 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AVS54_RS08325 PF00361 Proton-conducting membrane transporter AVS54_RS08330 PF01899 Na+/H+ ion antiporter subunit AVS54_RS08335 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AVS54_RS08360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVS54_RS08365 PF17676 LD-carboxypeptidase C-terminal domain AVS54_RS08365 PF02016 LD-carboxypeptidase N-terminal domain AVS54_RS08370 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS08375 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVS54_RS08385 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS08390 PF00005 ABC transporter AVS54_RS08390 PF12848 ABC transporter AVS54_RS08395 PF00005 ABC transporter AVS54_RS08425 PF00970 Oxidoreductase FAD-binding domain AVS54_RS08425 PF00175 Oxidoreductase NAD-binding domain AVS54_RS08425 PF00042 Globin AVS54_RS08430 PF02082 Transcriptional regulator AVS54_RS08435 PF01266 FAD dependent oxidoreductase AVS54_RS08450 PF01571 Aminomethyltransferase folate-binding domain AVS54_RS08455 PF02618 YceG-like family AVS54_RS08460 PF02223 Thymidylate kinase AVS54_RS08465 PF12169 DNA polymerase III subunits gamma and tau domain III AVS54_RS08470 PF01026 TatD related DNase AVS54_RS08485 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS08495 PF00005 ABC transporter AVS54_RS08500 PF00491 Arginase family AVS54_RS08505 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVS54_RS08505 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AVS54_RS08510 PF00171 Aldehyde dehydrogenase family AVS54_RS08515 PF01546 Peptidase family M20/M25/M40 AVS54_RS08515 PF07687 Peptidase dimerisation domain AVS54_RS08520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVS54_RS08520 PF00205 Thiamine pyrophosphate enzyme, central domain AVS54_RS08520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVS54_RS08530 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVS54_RS08530 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AVS54_RS08540 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS08540 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AVS54_RS08545 PF07729 FCD domain AVS54_RS08545 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS08555 PF04343 Protein of unknown function, DUF488 AVS54_RS08560 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVS54_RS08580 PF01425 Amidase AVS54_RS08585 PF07286 Protein of unknown function (DUF1445) AVS54_RS08595 PF01627 Hpt domain AVS54_RS08595 PF00989 PAS fold AVS54_RS08595 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS08595 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS08595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS08595 PF00072 Response regulator receiver domain AVS54_RS08600 PF00196 Bacterial regulatory proteins, luxR family AVS54_RS08600 PF00072 Response regulator receiver domain AVS54_RS08605 PF05594 Haemagluttinin repeat AVS54_RS08605 PF05860 haemagglutination activity domain AVS54_RS08605 PF13332 Hemagglutinin repeat AVS54_RS08605 PF13018 Extended Signal Peptide of Type V secretion system AVS54_RS08610 PF16970 Type-1 fimbrial protein, A AVS54_RS08615 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AVS54_RS08615 PF02753 Pili assembly chaperone PapD, C-terminal domain AVS54_RS08620 PF13953 PapC C-terminal domain AVS54_RS08620 PF00577 Outer membrane usher protein AVS54_RS08620 PF13954 PapC N-terminal domain AVS54_RS08625 PF00419 Fimbrial protein AVS54_RS08630 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AVS54_RS08630 PF17287 POTRA domain AVS54_RS08630 PF08479 POTRA domain, ShlB-type AVS54_RS08645 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS08670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS08670 PF03466 LysR substrate binding domain AVS54_RS08680 PF01968 Hydantoinase/oxoprolinase AVS54_RS08680 PF05378 Hydantoinase/oxoprolinase N-terminal region AVS54_RS08695 PF05552 Conserved TM helix AVS54_RS08695 PF00924 Mechanosensitive ion channel AVS54_RS08705 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS08710 PF00588 SpoU rRNA Methylase family AVS54_RS08715 PF00459 Inositol monophosphatase family AVS54_RS08720 PF03741 Integral membrane protein TerC family AVS54_RS08720 PF03471 Transporter associated domain AVS54_RS08725 PF02673 Bacitracin resistance protein BacA AVS54_RS08730 PF00149 Calcineurin-like phosphoesterase AVS54_RS08735 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVS54_RS08745 PF01406 tRNA synthetases class I (C) catalytic domain AVS54_RS08745 PF09190 DALR domain AVS54_RS08750 PF06029 AlkA N-terminal domain AVS54_RS08750 PF02805 Metal binding domain of Ada AVS54_RS08750 PF00730 HhH-GPD superfamily base excision DNA repair protein AVS54_RS08750 PF12833 Helix-turn-helix domain AVS54_RS08755 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AVS54_RS08765 PF09179 TilS substrate binding domain AVS54_RS08765 PF01171 PP-loop family AVS54_RS08770 PF01842 ACT domain AVS54_RS08770 PF00696 Amino acid kinase family AVS54_RS08770 PF13840 ACT domain AVS54_RS08795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVS54_RS08795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVS54_RS08800 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVS54_RS08800 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AVS54_RS08805 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVS54_RS08810 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS08815 PF00561 alpha/beta hydrolase fold AVS54_RS08820 PF03447 Homoserine dehydrogenase, NAD binding domain AVS54_RS08820 PF01958 Domain of unknown function DUF108 AVS54_RS08835 PF03466 LysR substrate binding domain AVS54_RS08835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS08855 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS08860 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS08865 PF08402 TOBE domain AVS54_RS08865 PF00005 ABC transporter AVS54_RS08875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS08875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVS54_RS08880 PF09339 IclR helix-turn-helix domain AVS54_RS08880 PF01614 Bacterial transcriptional regulator AVS54_RS08885 PF13380 CoA binding domain AVS54_RS08890 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS08895 PF01042 Endoribonuclease L-PSP AVS54_RS08920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVS54_RS08930 PF00535 Glycosyl transferase family 2 AVS54_RS08935 PF14883 Hypothetical glycosyl hydrolase family 13 AVS54_RS08935 PF01522 Polysaccharide deacetylase AVS54_RS08955 PF12802 MarR family AVS54_RS08960 PF00072 Response regulator receiver domain AVS54_RS08960 PF00196 Bacterial regulatory proteins, luxR family AVS54_RS08970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVS54_RS08970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVS54_RS08970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVS54_RS08970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVS54_RS08975 PF00342 Phosphoglucose isomerase AVS54_RS08980 PF00132 Bacterial transferase hexapeptide (six repeats) AVS54_RS08990 PF02146 Sir2 family AVS54_RS08995 PF00459 Inositol monophosphatase family AVS54_RS09000 PF00171 Aldehyde dehydrogenase family AVS54_RS09005 PF00202 Aminotransferase class-III AVS54_RS09010 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS09010 PF00155 Aminotransferase class I and II AVS54_RS09020 PF00580 UvrD/REP helicase N-terminal domain AVS54_RS09020 PF13361 UvrD-like helicase C-terminal domain AVS54_RS09025 PF01544 CorA-like Mg2+ transporter protein AVS54_RS09035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS09040 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS09045 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS09045 PF12911 N-terminal TM domain of oligopeptide transport permease C AVS54_RS09050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS09050 PF00005 ABC transporter AVS54_RS09055 PF01047 MarR family AVS54_RS09070 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AVS54_RS09070 PF08479 POTRA domain, ShlB-type AVS54_RS09075 PF00563 EAL domain AVS54_RS09075 PF00990 Diguanylate cyclase, GGDEF domain AVS54_RS09075 PF03707 Bacterial signalling protein N terminal repeat AVS54_RS09105 PF04972 BON domain AVS54_RS09105 PF00263 Bacterial type II and III secretion system protein AVS54_RS09105 PF13629 Pilus formation protein N terminal region AVS54_RS09115 PF00437 Type II/IV secretion system protein AVS54_RS09145 PF00072 Response regulator receiver domain AVS54_RS09145 PF02954 Bacterial regulatory protein, Fis family AVS54_RS09145 PF00158 Sigma-54 interaction domain AVS54_RS09160 PF08281 Sigma-70, region 4 AVS54_RS09160 PF04542 Sigma-70 region 2 AVS54_RS09170 PF00034 Cytochrome c AVS54_RS09175 PF08207 Elongation factor P (EF-P) KOW-like domain AVS54_RS09175 PF09285 Elongation factor P, C-terminal AVS54_RS09175 PF01132 Elongation factor P (EF-P) OB domain AVS54_RS09190 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AVS54_RS09195 PF00694 Aconitase C-terminal domain AVS54_RS09195 PF00330 Aconitase family (aconitate hydratase) AVS54_RS09205 PF00593 TonB dependent receptor AVS54_RS09205 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS09220 PF00691 OmpA family AVS54_RS09230 PF00330 Aconitase family (aconitate hydratase) AVS54_RS09230 PF06434 Aconitate hydratase 2 N-terminus AVS54_RS09230 PF11791 Aconitate B N-terminal domain AVS54_RS09255 PF00892 EamA-like transporter family AVS54_RS09260 PF01925 Sulfite exporter TauE/SafE AVS54_RS09280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS09280 PF03466 LysR substrate binding domain AVS54_RS09285 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AVS54_RS09285 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AVS54_RS09295 PF03466 LysR substrate binding domain AVS54_RS09295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS09330 PF03212 Pertactin AVS54_RS09330 PF03797 Autotransporter beta-domain AVS54_RS09335 PF02545 Maf-like protein AVS54_RS09340 PF02590 Predicted SPOUT methyltransferase AVS54_RS09350 PF01467 Cytidylyltransferase-like AVS54_RS09355 PF01218 Coproporphyrinogen III oxidase AVS54_RS09360 PF02844 Phosphoribosylglycinamide synthetase, N domain AVS54_RS09360 PF02843 Phosphoribosylglycinamide synthetase, C domain AVS54_RS09360 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AVS54_RS09365 PF01709 Transcriptional regulator AVS54_RS09370 PF05872 Bacterial protein of unknown function (DUF853) AVS54_RS09375 PF01235 Sodium:alanine symporter family AVS54_RS09380 PF00202 Aminotransferase class-III AVS54_RS09385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVS54_RS09390 PF00171 Aldehyde dehydrogenase family AVS54_RS09400 PF07687 Peptidase dimerisation domain AVS54_RS09400 PF01546 Peptidase family M20/M25/M40 AVS54_RS09405 PF00850 Histone deacetylase domain AVS54_RS09410 PF07883 Cupin domain AVS54_RS09415 PF00202 Aminotransferase class-III AVS54_RS09425 PF00005 ABC transporter AVS54_RS09425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS09430 PF12911 N-terminal TM domain of oligopeptide transport permease C AVS54_RS09430 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS09435 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS09440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS09445 PF00155 Aminotransferase class I and II AVS54_RS09445 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS09450 PF00180 Isocitrate/isopropylmalate dehydrogenase AVS54_RS09455 PF07690 Major Facilitator Superfamily AVS54_RS09460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVS54_RS09460 PF00529 HlyD membrane-fusion protein of T1SS AVS54_RS09470 PF01047 MarR family AVS54_RS09480 PF00892 EamA-like transporter family AVS54_RS09485 PF08240 Alcohol dehydrogenase GroES-like domain AVS54_RS09485 PF00107 Zinc-binding dehydrogenase AVS54_RS09490 PF01435 Peptidase family M48 AVS54_RS09500 PF00581 Rhodanese-like domain AVS54_RS09510 PF03466 LysR substrate binding domain AVS54_RS09510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS09515 PF08402 TOBE domain AVS54_RS09515 PF00005 ABC transporter AVS54_RS09520 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS09525 PF13419 Haloacid dehalogenase-like hydrolase AVS54_RS09535 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS09555 PF00860 Permease family AVS54_RS09560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVS54_RS09560 PF00672 HAMP domain AVS54_RS09560 PF02203 Tar ligand binding domain homologue AVS54_RS09565 PF01272 Transcription elongation factor, GreA/GreB, C-term AVS54_RS09565 PF03449 Transcription elongation factor, N-terminal AVS54_RS09595 PF00771 FHIPEP family AVS54_RS09660 PF01514 Secretory protein of YscJ/FliF family AVS54_RS09670 PF02108 Flagellar assembly protein FliH AVS54_RS09675 PF18269 T3SS EscN ATPase C-terminal domain AVS54_RS09675 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVS54_RS09675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVS54_RS09690 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AVS54_RS09695 PF00813 FliP family AVS54_RS09700 PF01313 Bacterial export proteins, family 3 AVS54_RS09705 PF01311 Bacterial export proteins, family 1 AVS54_RS09710 PF01312 FlhB HrpN YscU SpaS Family AVS54_RS09720 PF03958 Bacterial type II/III secretion system short domain AVS54_RS09720 PF00263 Bacterial type II and III secretion system protein AVS54_RS09725 PF08281 Sigma-70, region 4 AVS54_RS09725 PF04542 Sigma-70 region 2 AVS54_RS09750 PF07228 Stage II sporulation protein E (SpoIIE) AVS54_RS09750 PF00672 HAMP domain AVS54_RS09760 PF01168 Alanine racemase, N-terminal domain AVS54_RS09760 PF00842 Alanine racemase, C-terminal domain AVS54_RS09765 PF13581 Histidine kinase-like ATPase domain AVS54_RS09770 PF01740 STAS domain AVS54_RS09775 PF13091 PLD-like domain AVS54_RS09775 PF13396 Phospholipase_D-nuclease N-terminal AVS54_RS09785 PF03797 Autotransporter beta-domain AVS54_RS09805 PF16868 NMT1-like family AVS54_RS09810 PF00202 Aminotransferase class-III AVS54_RS09820 PF12802 MarR family AVS54_RS09825 PF00583 Acetyltransferase (GNAT) family AVS54_RS09835 PF01205 Uncharacterized protein family UPF0029 AVS54_RS09840 PF00085 Thioredoxin AVS54_RS09850 PF00860 Permease family AVS54_RS09855 PF00814 Glycoprotease family AVS54_RS09865 PF02660 Glycerol-3-phosphate acyltransferase AVS54_RS09870 PF01975 Survival protein SurE AVS54_RS09880 PF01476 LysM domain AVS54_RS09880 PF01551 Peptidase family M23 AVS54_RS09900 PF05958 tRNA (Uracil-5-)-methyltransferase AVS54_RS09905 PF00376 MerR family regulatory protein AVS54_RS09905 PF09278 MerR, DNA binding AVS54_RS09915 PF08534 Redoxin AVS54_RS09915 PF00462 Glutaredoxin AVS54_RS09920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS09920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVS54_RS09925 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AVS54_RS09930 PF03009 Glycerophosphoryl diester phosphodiesterase family AVS54_RS09935 PF13145 PPIC-type PPIASE domain AVS54_RS09940 PF13472 GDSL-like Lipase/Acylhydrolase family AVS54_RS09945 PF00005 ABC transporter AVS54_RS09960 PF04972 BON domain AVS54_RS09970 PF05532 CsbD-like AVS54_RS09975 PF08245 Mur ligase middle domain AVS54_RS09975 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVS54_RS09975 PF02875 Mur ligase family, glutamate ligase domain AVS54_RS09980 PF08443 RimK-like ATP-grasp domain AVS54_RS09980 PF08245 Mur ligase middle domain AVS54_RS09980 PF02875 Mur ligase family, glutamate ligase domain AVS54_RS10000 PF04305 Protein of unknown function (DUF455) AVS54_RS10005 PF13406 Transglycosylase SLT domain AVS54_RS10025 PF01037 Lrp/AsnC ligand binding domain AVS54_RS10035 PF02441 Flavoprotein AVS54_RS10035 PF04127 DNA / pantothenate metabolism flavoprotein AVS54_RS10040 PF01252 Signal peptidase (SPase) II AVS54_RS10045 PF00133 tRNA synthetases class I (I, L, M and V) AVS54_RS10045 PF08264 Anticodon-binding domain of tRNA AVS54_RS10045 PF06827 Zinc finger found in FPG and IleRS AVS54_RS10050 PF01687 Riboflavin kinase AVS54_RS10050 PF06574 FAD synthetase AVS54_RS10055 PF00551 Formyl transferase AVS54_RS10075 PF13361 UvrD-like helicase C-terminal domain AVS54_RS10075 PF00580 UvrD/REP helicase N-terminal domain AVS54_RS10080 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS10085 PF00005 ABC transporter AVS54_RS10085 PF12848 ABC transporter AVS54_RS10090 PF05175 Methyltransferase small domain AVS54_RS10095 PF01546 Peptidase family M20/M25/M40 AVS54_RS10095 PF07687 Peptidase dimerisation domain AVS54_RS10100 PF00132 Bacterial transferase hexapeptide (six repeats) AVS54_RS10100 PF14602 Hexapeptide repeat of succinyl-transferase AVS54_RS10100 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AVS54_RS10135 PF00313 'Cold-shock' DNA-binding domain AVS54_RS10150 PF03350 Uncharacterized protein family, UPF0114 AVS54_RS10155 PF05698 Bacterial trigger factor protein (TF) C-terminus AVS54_RS10155 PF05697 Bacterial trigger factor protein (TF) AVS54_RS10155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVS54_RS10160 PF00574 Clp protease AVS54_RS10165 PF07724 AAA domain (Cdc48 subfamily) AVS54_RS10165 PF10431 C-terminal, D2-small domain, of ClpB protein AVS54_RS10165 PF06689 ClpX C4-type zinc finger AVS54_RS10170 PF02190 ATP-dependent protease La (LON) substrate-binding domain AVS54_RS10170 PF00004 ATPase family associated with various cellular activities (AAA) AVS54_RS10170 PF05362 Lon protease (S16) C-terminal proteolytic domain AVS54_RS10175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS10175 PF03466 LysR substrate binding domain AVS54_RS10180 PF02515 CoA-transferase family III AVS54_RS10185 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS10190 PF01575 MaoC like domain AVS54_RS10195 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS10205 PF00108 Thiolase, N-terminal domain AVS54_RS10205 PF02803 Thiolase, C-terminal domain AVS54_RS10215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS10215 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS10215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS10225 PF01144 Coenzyme A transferase AVS54_RS10230 PF01144 Coenzyme A transferase AVS54_RS10235 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS10260 PF03797 Autotransporter beta-domain AVS54_RS10260 PF03212 Pertactin AVS54_RS10265 PF01726 LexA DNA binding domain AVS54_RS10265 PF00717 Peptidase S24-like AVS54_RS10270 PF00155 Aminotransferase class I and II AVS54_RS10275 PF12344 Ultra-violet resistance protein B AVS54_RS10275 PF17757 UvrB interaction domain AVS54_RS10275 PF02151 UvrB/uvrC motif AVS54_RS10275 PF00271 Helicase conserved C-terminal domain AVS54_RS10275 PF04851 Type III restriction enzyme, res subunit AVS54_RS10280 PF01451 Low molecular weight phosphotyrosine protein phosphatase AVS54_RS10285 PF02082 Transcriptional regulator AVS54_RS10290 PF00266 Aminotransferase class-V AVS54_RS10295 PF01592 NifU-like N terminal domain AVS54_RS10300 PF01521 Iron-sulphur cluster biosynthesis AVS54_RS10305 PF07743 HSCB C-terminal oligomerisation domain AVS54_RS10310 PF00012 Hsp70 protein AVS54_RS10315 PF00111 2Fe-2S iron-sulfur cluster binding domain AVS54_RS10320 PF04384 Iron-sulphur cluster assembly AVS54_RS10325 PF02142 MGS-like domain AVS54_RS10335 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS10345 PF03812 2-keto-3-deoxygluconate permease AVS54_RS10350 PF07005 Sugar-binding N-terminal domain AVS54_RS10350 PF17042 Nucleotide-binding C-terminal domain AVS54_RS10355 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AVS54_RS10370 PF02261 Aspartate decarboxylase AVS54_RS10375 PF00970 Oxidoreductase FAD-binding domain AVS54_RS10375 PF00175 Oxidoreductase NAD-binding domain AVS54_RS10375 PF00111 2Fe-2S iron-sulfur cluster binding domain AVS54_RS10380 PF01266 FAD dependent oxidoreductase AVS54_RS10385 PF13416 Bacterial extracellular solute-binding protein AVS54_RS10390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS10390 PF03466 LysR substrate binding domain AVS54_RS10405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS10410 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS10415 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS10420 PF00005 ABC transporter AVS54_RS10420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS10425 PF01425 Amidase AVS54_RS10470 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AVS54_RS10470 PF01411 tRNA synthetases class II (A) AVS54_RS10470 PF02272 DHHA1 domain AVS54_RS10475 PF01206 Sulfurtransferase TusA AVS54_RS10485 PF00886 Ribosomal protein S16 AVS54_RS10490 PF01782 RimM N-terminal domain AVS54_RS10495 PF01746 tRNA (Guanine-1)-methyltransferase AVS54_RS10500 PF00266 Aminotransferase class-V AVS54_RS10520 PF08521 Two-component sensor kinase N-terminal AVS54_RS10520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS10520 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS10525 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS10525 PF00072 Response regulator receiver domain AVS54_RS10535 PF08264 Anticodon-binding domain of tRNA AVS54_RS10535 PF10458 Valyl tRNA synthetase tRNA binding arm AVS54_RS10535 PF00133 tRNA synthetases class I (I, L, M and V) AVS54_RS10540 PF00334 Nucleoside diphosphate kinase AVS54_RS10545 PF04055 Radical SAM superfamily AVS54_RS10555 PF04551 GcpE protein AVS54_RS10560 PF13393 Histidyl-tRNA synthetase AVS54_RS10560 PF03129 Anticodon binding domain AVS54_RS10565 PF09976 Tetratricopeptide repeat-like domain AVS54_RS10570 PF13360 PQQ-like domain AVS54_RS10575 PF01926 50S ribosome-binding GTPase AVS54_RS10575 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AVS54_RS10580 PF00155 Aminotransferase class I and II AVS54_RS10585 PF17209 Hfq protein AVS54_RS10590 PF16360 GTP-binding GTPase Middle Region AVS54_RS10590 PF01926 50S ribosome-binding GTPase AVS54_RS10590 PF13167 GTP-binding GTPase N-terminal AVS54_RS10595 PF01145 SPFH domain / Band 7 family AVS54_RS10595 PF12221 Bacterial membrane protein N terminal AVS54_RS10600 PF01145 SPFH domain / Band 7 family AVS54_RS10605 PF13393 Histidyl-tRNA synthetase AVS54_RS10610 PF00709 Adenylosuccinate synthetase AVS54_RS10615 PF00156 Phosphoribosyl transferase domain AVS54_RS10620 PF01165 Ribosomal protein S21 AVS54_RS10625 PF01807 CHC2 zinc finger AVS54_RS10625 PF08275 DNA primase catalytic core, N-terminal domain AVS54_RS10625 PF10410 DnaB-helicase binding domain of primase AVS54_RS10625 PF08278 DNA primase DnaG DnaB-binding AVS54_RS10630 PF04545 Sigma-70, region 4 AVS54_RS10630 PF00140 Sigma-70 factor, region 1.2 AVS54_RS10630 PF03979 Sigma-70 factor, region 1.1 AVS54_RS10630 PF04539 Sigma-70 region 3 AVS54_RS10630 PF04542 Sigma-70 region 2 AVS54_RS10630 PF04546 Sigma-70, non-essential region AVS54_RS10670 PF03788 LrgA family AVS54_RS10675 PF13649 Methyltransferase domain AVS54_RS10685 PF00155 Aminotransferase class I and II AVS54_RS10690 PF00202 Aminotransferase class-III AVS54_RS10725 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVS54_RS10725 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AVS54_RS10730 PF13746 4Fe-4S dicluster domain AVS54_RS10730 PF12801 4Fe-4S binding domain AVS54_RS10730 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AVS54_RS10755 PF00005 ABC transporter AVS54_RS10760 PF01061 ABC-2 type transporter AVS54_RS10765 PF01594 AI-2E family transporter AVS54_RS10780 PF01590 GAF domain AVS54_RS10780 PF02954 Bacterial regulatory protein, Fis family AVS54_RS10780 PF00158 Sigma-54 interaction domain AVS54_RS10785 PF00171 Aldehyde dehydrogenase family AVS54_RS10800 PF04286 Protein of unknown function (DUF445) AVS54_RS10805 PF03466 LysR substrate binding domain AVS54_RS10805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS10810 PF02567 Phenazine biosynthesis-like protein AVS54_RS10815 PF07237 Protein of unknown function (DUF1428) AVS54_RS10820 PF02805 Metal binding domain of Ada AVS54_RS10820 PF12833 Helix-turn-helix domain AVS54_RS10830 PF03625 Domain of unknown function DUF302 AVS54_RS10830 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AVS54_RS10850 PF00916 Sulfate permease family AVS54_RS10850 PF01740 STAS domain AVS54_RS10865 PF02535 ZIP Zinc transporter AVS54_RS10875 PF00005 ABC transporter AVS54_RS10875 PF00664 ABC transporter transmembrane region AVS54_RS10885 PF00583 Acetyltransferase (GNAT) family AVS54_RS10900 PF07690 Major Facilitator Superfamily AVS54_RS10920 PF12833 Helix-turn-helix domain AVS54_RS10920 PF06719 AraC-type transcriptional regulator N-terminus AVS54_RS10930 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVS54_RS10935 PF00111 2Fe-2S iron-sulfur cluster binding domain AVS54_RS10935 PF01799 [2Fe-2S] binding domain AVS54_RS10945 PF03466 LysR substrate binding domain AVS54_RS10945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS10970 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS10970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVS54_RS11000 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS11005 PF01522 Polysaccharide deacetylase AVS54_RS11015 PF01425 Amidase AVS54_RS11020 PF01425 Amidase AVS54_RS11055 PF01152 Bacterial-like globin AVS54_RS11080 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS11100 PF00108 Thiolase, N-terminal domain AVS54_RS11100 PF02803 Thiolase, C-terminal domain AVS54_RS11105 PF14535 AMP-binding enzyme C-terminal domain AVS54_RS11105 PF00501 AMP-binding enzyme AVS54_RS11110 PF07859 alpha/beta hydrolase fold AVS54_RS11115 PF02515 CoA-transferase family III AVS54_RS11120 PF00111 2Fe-2S iron-sulfur cluster binding domain AVS54_RS11130 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS11135 PF00866 Ring hydroxylating beta subunit AVS54_RS11140 PF00355 Rieske [2Fe-2S] domain AVS54_RS11140 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AVS54_RS11145 PF13458 Periplasmic binding protein AVS54_RS11150 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS11155 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS11155 PF11862 Domain of unknown function (DUF3382) AVS54_RS11170 PF00463 Isocitrate lyase family AVS54_RS11175 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AVS54_RS11175 PF14489 QueF-like protein AVS54_RS11190 PF01066 CDP-alcohol phosphatidyltransferase AVS54_RS11195 PF08459 UvrC Helix-hairpin-helix N-terminal AVS54_RS11195 PF01541 GIY-YIG catalytic domain AVS54_RS11195 PF02151 UvrB/uvrC motif AVS54_RS11200 PF00933 Glycosyl hydrolase family 3 N terminal domain AVS54_RS11205 PF01648 4'-phosphopantetheinyl transferase superfamily AVS54_RS11210 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AVS54_RS11215 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AVS54_RS11215 PF02321 Outer membrane efflux protein AVS54_RS11220 PF00873 AcrB/AcrD/AcrF family AVS54_RS11225 PF00529 HlyD membrane-fusion protein of T1SS AVS54_RS11225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVS54_RS11245 PF03459 TOBE domain AVS54_RS11245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS11250 PF00005 ABC transporter AVS54_RS11265 PF00080 Copper/zinc superoxide dismutase (SODC) AVS54_RS11270 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS11280 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS11290 PF07729 FCD domain AVS54_RS11290 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS11300 PF00108 Thiolase, N-terminal domain AVS54_RS11300 PF02803 Thiolase, C-terminal domain AVS54_RS11305 PF01361 Tautomerase enzyme AVS54_RS11310 PF00571 CBS domain AVS54_RS11310 PF00005 ABC transporter AVS54_RS11315 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS11335 PF07690 Major Facilitator Superfamily AVS54_RS11340 PF00830 Ribosomal L28 family AVS54_RS11345 PF00471 Ribosomal protein L33 AVS54_RS11350 PF00916 Sulfate permease family AVS54_RS11350 PF01740 STAS domain AVS54_RS11370 PF01047 MarR family AVS54_RS11375 PF07690 Major Facilitator Superfamily AVS54_RS11380 PF08264 Anticodon-binding domain of tRNA AVS54_RS11380 PF00133 tRNA synthetases class I (I, L, M and V) AVS54_RS11380 PF13603 Leucyl-tRNA synthetase, Domain 2 AVS54_RS11380 PF09334 tRNA synthetases class I (M) AVS54_RS11395 PF00171 Aldehyde dehydrogenase family AVS54_RS11405 PF01425 Amidase AVS54_RS11410 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVS54_RS11410 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVS54_RS11460 PF10150 Ribonuclease E/G family AVS54_RS11460 PF00575 S1 RNA binding domain AVS54_RS11465 PF01842 ACT domain AVS54_RS11465 PF00800 Prephenate dehydratase AVS54_RS11475 PF07690 Major Facilitator Superfamily AVS54_RS11480 PF00664 ABC transporter transmembrane region AVS54_RS11480 PF00005 ABC transporter AVS54_RS11485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AVS54_RS11495 PF03692 Putative zinc- or iron-chelating domain AVS54_RS11510 PF00884 Sulfatase AVS54_RS11515 PF13439 Glycosyltransferase Family 4 AVS54_RS11515 PF00534 Glycosyl transferases group 1 AVS54_RS11520 PF00535 Glycosyl transferase family 2 AVS54_RS11525 PF01522 Polysaccharide deacetylase AVS54_RS11530 PF00534 Glycosyl transferases group 1 AVS54_RS11530 PF13439 Glycosyltransferase Family 4 AVS54_RS11535 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVS54_RS11535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVS54_RS11535 PF14579 Helix-hairpin-helix motif AVS54_RS11535 PF01336 OB-fold nucleic acid binding domain AVS54_RS11535 PF02811 PHP domain AVS54_RS11545 PF04408 Helicase associated domain (HA2) AVS54_RS11545 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AVS54_RS11545 PF00270 DEAD/DEAH box helicase AVS54_RS11545 PF11898 Domain of unknown function (DUF3418) AVS54_RS11545 PF00271 Helicase conserved C-terminal domain AVS54_RS11550 PF00583 Acetyltransferase (GNAT) family AVS54_RS11550 PF00696 Amino acid kinase family AVS54_RS11555 PF04362 Bacterial Fe(2+) trafficking AVS54_RS11560 PF04185 Phosphoesterase family AVS54_RS11560 PF05506 Domain of unknown function (DUF756) AVS54_RS11565 PF01895 PhoU domain AVS54_RS11570 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AVS54_RS11575 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS11575 PF18158 Adaptive response protein AidB N-terminal domain AVS54_RS11575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS11580 PF02646 RmuC family AVS54_RS11590 PF02245 Methylpurine-DNA glycosylase (MPG) AVS54_RS11600 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS11605 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS11610 PF08402 TOBE domain AVS54_RS11610 PF00005 ABC transporter AVS54_RS11615 PF13416 Bacterial extracellular solute-binding protein AVS54_RS11635 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS11645 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AVS54_RS11645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVS54_RS11665 PF00285 Citrate synthase, C-terminal domain AVS54_RS11670 PF03937 Flavinator of succinate dehydrogenase AVS54_RS11675 PF13085 2Fe-2S iron-sulfur cluster binding domain AVS54_RS11680 PF00890 FAD binding domain AVS54_RS11680 PF02910 Fumarate reductase flavoprotein C-term AVS54_RS11685 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AVS54_RS11690 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AVS54_RS11695 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS11695 PF07702 UTRA domain AVS54_RS11700 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AVS54_RS11700 PF00056 lactate/malate dehydrogenase, NAD binding domain AVS54_RS11710 PF00285 Citrate synthase, C-terminal domain AVS54_RS11715 PF00694 Aconitase C-terminal domain AVS54_RS11715 PF00330 Aconitase family (aconitate hydratase) AVS54_RS11720 PF04303 PrpF protein AVS54_RS11725 PF03972 MmgE/PrpD family AVS54_RS11730 PF03653 Uncharacterised protein family (UPF0093) AVS54_RS11735 PF01170 Putative RNA methylase family UPF0020 AVS54_RS11735 PF02926 THUMP domain AVS54_RS11755 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS11755 PF00501 AMP-binding enzyme AVS54_RS11755 PF16177 Acetyl-coenzyme A synthetase N-terminus AVS54_RS11765 PF01430 Hsp33 protein AVS54_RS11790 PF00211 Adenylate and Guanylate cyclase catalytic domain AVS54_RS11795 PF04977 Septum formation initiator AVS54_RS11800 PF03952 Enolase, N-terminal domain AVS54_RS11800 PF00113 Enolase, C-terminal TIM barrel domain AVS54_RS11810 PF00793 DAHP synthetase I family AVS54_RS11815 PF00117 Glutamine amidotransferase class-I AVS54_RS11815 PF06418 CTP synthase N-terminus AVS54_RS11825 PF01321 Creatinase/Prolidase N-terminal domain AVS54_RS11825 PF00557 Metallopeptidase family M24 AVS54_RS11835 PF03576 Peptidase family S58 AVS54_RS11840 PF12911 N-terminal TM domain of oligopeptide transport permease C AVS54_RS11840 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS11845 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS11850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS11855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS11855 PF00005 ABC transporter AVS54_RS11860 PF01112 Asparaginase AVS54_RS11870 PF01144 Coenzyme A transferase AVS54_RS11890 PF16363 GDP-mannose 4,6 dehydratase AVS54_RS11905 PF01212 Beta-eliminating lyase AVS54_RS11910 PF00892 EamA-like transporter family AVS54_RS11915 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS11915 PF16177 Acetyl-coenzyme A synthetase N-terminus AVS54_RS11915 PF00501 AMP-binding enzyme AVS54_RS11925 PF03928 Haem-degrading AVS54_RS11930 PF00501 AMP-binding enzyme AVS54_RS11930 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS11930 PF16177 Acetyl-coenzyme A synthetase N-terminus AVS54_RS11935 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS11935 PF16177 Acetyl-coenzyme A synthetase N-terminus AVS54_RS11935 PF00501 AMP-binding enzyme AVS54_RS11940 PF00877 NlpC/P60 family AVS54_RS11955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS11955 PF03466 LysR substrate binding domain AVS54_RS11960 PF00171 Aldehyde dehydrogenase family AVS54_RS11970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS11970 PF03466 LysR substrate binding domain AVS54_RS11980 PF02789 Cytosol aminopeptidase family, N-terminal domain AVS54_RS11980 PF00883 Cytosol aminopeptidase family, catalytic domain AVS54_RS11985 PF04364 DNA polymerase III chi subunit, HolC AVS54_RS11995 PF01027 Inhibitor of apoptosis-promoting Bax1 AVS54_RS12000 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS12010 PF00291 Pyridoxal-phosphate dependent enzyme AVS54_RS12020 PF11967 Recombination protein O N terminal AVS54_RS12020 PF02565 Recombination protein O C terminal AVS54_RS12025 PF07650 KH domain AVS54_RS12025 PF01926 50S ribosome-binding GTPase AVS54_RS12030 PF14622 Ribonuclease-III-like AVS54_RS12030 PF00035 Double-stranded RNA binding motif AVS54_RS12035 PF10502 Signal peptidase, peptidase S26 AVS54_RS12040 PF00679 Elongation factor G C-terminus AVS54_RS12040 PF00009 Elongation factor Tu GTP binding domain AVS54_RS12040 PF03144 Elongation factor Tu domain 2 AVS54_RS12040 PF06421 GTP-binding protein LepA C-terminus AVS54_RS12045 PF13180 PDZ domain AVS54_RS12060 PF08281 Sigma-70, region 4 AVS54_RS12060 PF04542 Sigma-70 region 2 AVS54_RS12070 PF02801 Beta-ketoacyl synthase, C-terminal domain AVS54_RS12070 PF00109 Beta-ketoacyl synthase, N-terminal domain AVS54_RS12075 PF00550 Phosphopantetheine attachment site AVS54_RS12085 PF00698 Acyl transferase domain AVS54_RS12090 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AVS54_RS12090 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AVS54_RS12095 PF02504 Fatty acid synthesis protein AVS54_RS12100 PF01783 Ribosomal L32p protein family AVS54_RS12105 PF02620 Large ribosomal RNA subunit accumulation protein YceD AVS54_RS12110 PF02545 Maf-like protein AVS54_RS12120 PF01510 N-acetylmuramoyl-L-alanine amidase AVS54_RS12135 PF03883 Peroxide stress protein YaaA AVS54_RS12150 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AVS54_RS12155 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVS54_RS12165 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS12170 PF01416 tRNA pseudouridine synthase AVS54_RS12180 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVS54_RS12180 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVS54_RS12185 PF00180 Isocitrate/isopropylmalate dehydrogenase AVS54_RS12190 PF00694 Aconitase C-terminal domain AVS54_RS12195 PF00330 Aconitase family (aconitate hydratase) AVS54_RS12200 PF12849 PBP superfamily domain AVS54_RS12205 PF00005 ABC transporter AVS54_RS12210 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS12235 PF13247 4Fe-4S dicluster domain AVS54_RS12240 PF01568 Molydopterin dinucleotide binding domain AVS54_RS12240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVS54_RS12240 PF00384 Molybdopterin oxidoreductase AVS54_RS12270 PF10609 NUBPL iron-transfer P-loop NTPase AVS54_RS12275 PF12804 MobA-like NTP transferase domain AVS54_RS12280 PF03454 MoeA C-terminal region (domain IV) AVS54_RS12280 PF00994 Probable molybdopterin binding domain AVS54_RS12280 PF03453 MoeA N-terminal region (domain I and II) AVS54_RS12285 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AVS54_RS12290 PF01435 Peptidase family M48 AVS54_RS12295 PF01264 Chorismate synthase AVS54_RS12300 PF00563 EAL domain AVS54_RS12300 PF00990 Diguanylate cyclase, GGDEF domain AVS54_RS12300 PF08447 PAS fold AVS54_RS12300 PF08448 PAS fold AVS54_RS12315 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS12320 PF08402 TOBE domain AVS54_RS12320 PF00005 ABC transporter AVS54_RS12325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS12325 PF03466 LysR substrate binding domain AVS54_RS12330 PF00300 Histidine phosphatase superfamily (branch 1) AVS54_RS12340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVS54_RS12340 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AVS54_RS12340 PF02142 MGS-like domain AVS54_RS12345 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AVS54_RS12345 PF00117 Glutamine amidotransferase class-I AVS54_RS12350 PF00923 Transaldolase/Fructose-6-phosphate aldolase AVS54_RS12375 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVS54_RS12375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVS54_RS12385 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS12390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS12390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS12390 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS12395 PF03658 RnfH family Ubiquitin AVS54_RS12400 PF03364 Polyketide cyclase / dehydrase and lipid transport AVS54_RS12410 PF01668 SmpB protein AVS54_RS12415 PF08448 PAS fold AVS54_RS12415 PF00990 Diguanylate cyclase, GGDEF domain AVS54_RS12420 PF16200 C-terminal region of band_7 AVS54_RS12420 PF01145 SPFH domain / Band 7 family AVS54_RS12435 PF00117 Glutamine amidotransferase class-I AVS54_RS12435 PF00958 GMP synthase C terminal domain AVS54_RS12440 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AVS54_RS12440 PF02896 PEP-utilising enzyme, TIM barrel domain AVS54_RS12440 PF00391 PEP-utilising enzyme, mobile domain AVS54_RS12445 PF03618 Kinase/pyrophosphorylase AVS54_RS12450 PF00588 SpoU rRNA Methylase family AVS54_RS12450 PF08032 RNA 2'-O ribose methyltransferase substrate binding AVS54_RS12455 PF01351 Ribonuclease HII AVS54_RS12460 PF02684 Lipid-A-disaccharide synthetase AVS54_RS12465 PF00132 Bacterial transferase hexapeptide (six repeats) AVS54_RS12465 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AVS54_RS12470 PF07977 FabA-like domain AVS54_RS12475 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AVS54_RS12475 PF00132 Bacterial transferase hexapeptide (six repeats) AVS54_RS12480 PF03938 Outer membrane protein (OmpH-like) AVS54_RS12485 PF07244 Surface antigen variable number repeat AVS54_RS12485 PF01103 Surface antigen AVS54_RS12490 PF02163 Peptidase family M50 AVS54_RS12490 PF17820 PDZ domain AVS54_RS12495 PF13288 DXP reductoisomerase C-terminal domain AVS54_RS12495 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AVS54_RS12495 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AVS54_RS12505 PF01255 Putative undecaprenyl diphosphate synthase AVS54_RS12510 PF01765 Ribosome recycling factor AVS54_RS12515 PF00696 Amino acid kinase family AVS54_RS12520 PF00889 Elongation factor TS AVS54_RS12525 PF00318 Ribosomal protein S2 AVS54_RS12530 PF00557 Metallopeptidase family M24 AVS54_RS12535 PF01909 Nucleotidyltransferase domain AVS54_RS12535 PF08335 GlnD PII-uridylyltransferase AVS54_RS12535 PF01966 HD domain AVS54_RS12550 PF00156 Phosphoribosyl transferase domain AVS54_RS12565 PF08245 Mur ligase middle domain AVS54_RS12565 PF02875 Mur ligase family, glutamate ligase domain AVS54_RS12575 PF07196 Flagellin hook IN motif AVS54_RS12575 PF07195 Flagellar hook-associated protein 2 C-terminus AVS54_RS12575 PF02465 Flagellar hook-associated protein 2 N-terminus AVS54_RS12580 PF02561 Flagellar protein FliS AVS54_RS12600 PF01312 FlhB HrpN YscU SpaS Family AVS54_RS12610 PF02049 Flagellar hook-basal body complex protein FliE AVS54_RS12615 PF01514 Secretory protein of YscJ/FliF family AVS54_RS12615 PF08345 Flagellar M-ring protein C-terminal AVS54_RS12620 PF01706 FliG C-terminal domain AVS54_RS12620 PF14841 FliG middle domain AVS54_RS12620 PF14842 FliG N-terminal domain AVS54_RS12630 PF18269 T3SS EscN ATPase C-terminal domain AVS54_RS12630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVS54_RS12655 PF03748 Flagellar basal body-associated protein FliL AVS54_RS12660 PF02154 Flagellar motor switch protein FliM AVS54_RS12660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AVS54_RS12665 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AVS54_RS12665 PF16973 Flagellar motor switch protein FliN N-terminal AVS54_RS12670 PF04347 Flagellar biosynthesis protein, FliO AVS54_RS12675 PF00813 FliP family AVS54_RS12680 PF01313 Bacterial export proteins, family 3 AVS54_RS12685 PF01311 Bacterial export proteins, family 1 AVS54_RS12695 PF08447 PAS fold AVS54_RS12695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVS54_RS12700 PF02203 Tar ligand binding domain homologue AVS54_RS12700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVS54_RS12700 PF00672 HAMP domain AVS54_RS12705 PF00672 HAMP domain AVS54_RS12705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVS54_RS12705 PF02203 Tar ligand binding domain homologue AVS54_RS12710 PF00669 Bacterial flagellin N-terminal helical region AVS54_RS12715 PF00460 Flagella basal body rod protein AVS54_RS12715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVS54_RS12720 PF10135 Rod binding protein AVS54_RS12720 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AVS54_RS12725 PF02119 Flagellar P-ring protein AVS54_RS12730 PF02107 Flagellar L-ring protein AVS54_RS12735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVS54_RS12735 PF00460 Flagella basal body rod protein AVS54_RS12740 PF00460 Flagella basal body rod protein AVS54_RS12740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVS54_RS12745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVS54_RS12745 PF00460 Flagella basal body rod protein AVS54_RS12745 PF07559 Flagellar basal body protein FlaE AVS54_RS12750 PF03963 Flagellar hook capping protein - N-terminal region AVS54_RS12750 PF13860 FlgD Ig-like domain AVS54_RS12750 PF13861 FlgD Tudor-like domain AVS54_RS12755 PF00460 Flagella basal body rod protein AVS54_RS12755 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVS54_RS12760 PF00460 Flagella basal body rod protein AVS54_RS12770 PF04316 Anti-sigma-28 factor, FlgM AVS54_RS12780 PF00448 SRP54-type protein, GTPase domain AVS54_RS12790 PF01312 FlhB HrpN YscU SpaS Family AVS54_RS12800 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS12805 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS12810 PF00005 ABC transporter AVS54_RS12820 PF08546 Ketopantoate reductase PanE/ApbA C terminal AVS54_RS12820 PF02558 Ketopantoate reductase PanE/ApbA AVS54_RS12825 PF13378 Enolase C-terminal domain-like AVS54_RS12830 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS12840 PF00694 Aconitase C-terminal domain AVS54_RS12845 PF00356 Bacterial regulatory proteins, lacI family AVS54_RS12850 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS12855 PF02515 CoA-transferase family III AVS54_RS12865 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS12870 PF13607 Succinyl-CoA ligase like flavodoxin domain AVS54_RS12870 PF13380 CoA binding domain AVS54_RS12875 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS12875 PF07729 FCD domain AVS54_RS12880 PF03328 HpcH/HpaI aldolase/citrate lyase family AVS54_RS12890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS12890 PF03466 LysR substrate binding domain AVS54_RS12900 PF12951 Passenger-associated-transport-repeat AVS54_RS12910 PF03551 Transcriptional regulator PadR-like family AVS54_RS12920 PF03372 Endonuclease/Exonuclease/phosphatase family AVS54_RS12925 PF13091 PLD-like domain AVS54_RS12940 PF03706 Lysylphosphatidylglycerol synthase TM region AVS54_RS12970 PF11896 Domain of unknown function (DUF3416) AVS54_RS12970 PF00128 Alpha amylase, catalytic domain AVS54_RS12975 PF00128 Alpha amylase, catalytic domain AVS54_RS12975 PF16657 Maltogenic Amylase, C-terminal domain AVS54_RS12980 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVS54_RS12980 PF02806 Alpha amylase, C-terminal all-beta domain AVS54_RS12980 PF00128 Alpha amylase, catalytic domain AVS54_RS12985 PF00128 Alpha amylase, catalytic domain AVS54_RS12985 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVS54_RS12990 PF11941 Domain of unknown function (DUF3459) AVS54_RS12990 PF00128 Alpha amylase, catalytic domain AVS54_RS12990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVS54_RS13000 PF00128 Alpha amylase, catalytic domain AVS54_RS13010 PF08543 Phosphomethylpyrimidine kinase AVS54_RS13015 PF01168 Alanine racemase, N-terminal domain AVS54_RS13020 PF00155 Aminotransferase class I and II AVS54_RS13020 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS13035 PF00582 Universal stress protein family AVS54_RS13040 PF00248 Aldo/keto reductase family AVS54_RS13050 PF16485 Protealysin propeptide AVS54_RS13050 PF01447 Thermolysin metallopeptidase, catalytic domain AVS54_RS13050 PF02868 Thermolysin metallopeptidase, alpha-helical domain AVS54_RS13055 PF07681 DoxX AVS54_RS13075 PF00578 AhpC/TSA family AVS54_RS13080 PF03960 ArsC family AVS54_RS13085 PF02515 CoA-transferase family III AVS54_RS13105 PF00255 Glutathione peroxidase AVS54_RS13110 PF00043 Glutathione S-transferase, C-terminal domain AVS54_RS13110 PF02798 Glutathione S-transferase, N-terminal domain AVS54_RS13135 PF02666 Phosphatidylserine decarboxylase AVS54_RS13140 PF01070 FMN-dependent dehydrogenase AVS54_RS13145 PF03180 NLPA lipoprotein AVS54_RS13150 PF08808 RES domain AVS54_RS13160 PF04241 Protein of unknown function (DUF423) AVS54_RS13180 PF13458 Periplasmic binding protein AVS54_RS13185 PF00005 ABC transporter AVS54_RS13185 PF17912 MalK OB fold domain AVS54_RS13190 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS13195 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS13200 PF13416 Bacterial extracellular solute-binding protein AVS54_RS13205 PF03807 NADP oxidoreductase coenzyme F420-dependent AVS54_RS13205 PF14748 Pyrroline-5-carboxylate reductase dimerisation AVS54_RS13210 PF02592 Putative vitamin uptake transporter AVS54_RS13220 PF13458 Periplasmic binding protein AVS54_RS13225 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS13230 PF11862 Domain of unknown function (DUF3382) AVS54_RS13230 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS13235 PF00005 ABC transporter AVS54_RS13235 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVS54_RS13240 PF00005 ABC transporter AVS54_RS13245 PF01177 Asp/Glu/Hydantoin racemase AVS54_RS13260 PF00892 EamA-like transporter family AVS54_RS13270 PF04235 Protein of unknown function (DUF418) AVS54_RS13275 PF00521 DNA gyrase/topoisomerase IV, subunit A AVS54_RS13285 PF00986 DNA gyrase B subunit, carboxyl terminus AVS54_RS13285 PF01751 Toprim domain AVS54_RS13285 PF00204 DNA gyrase B AVS54_RS13285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS13290 PF00085 Thioredoxin AVS54_RS13295 PF07497 Rho termination factor, RNA-binding domain AVS54_RS13295 PF07498 Rho termination factor, N-terminal domain AVS54_RS13295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVS54_RS13305 PF03710 Glutamate-ammonia ligase adenylyltransferase AVS54_RS13305 PF08335 GlnD PII-uridylyltransferase AVS54_RS13310 PF02677 Epoxyqueuosine reductase QueH AVS54_RS13315 PF03315 Serine dehydratase beta chain AVS54_RS13315 PF03313 Serine dehydratase alpha chain AVS54_RS13320 PF02690 Na+/Pi-cotransporter AVS54_RS13325 PF01738 Dienelactone hydrolase family AVS54_RS13335 PF00476 DNA polymerase family A AVS54_RS13335 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AVS54_RS13335 PF01367 5'-3' exonuclease, C-terminal SAM fold AVS54_RS13335 PF01612 3'-5' exonuclease AVS54_RS13340 PF03641 Possible lysine decarboxylase AVS54_RS13355 PF00679 Elongation factor G C-terminus AVS54_RS13355 PF03144 Elongation factor Tu domain 2 AVS54_RS13355 PF00009 Elongation factor Tu GTP binding domain AVS54_RS13360 PF01509 TruB family pseudouridylate synthase (N terminal domain) AVS54_RS13360 PF16198 tRNA pseudouridylate synthase B C-terminal domain AVS54_RS13365 PF02033 Ribosome-binding factor A AVS54_RS13370 PF11987 Translation-initiation factor 2 AVS54_RS13370 PF00009 Elongation factor Tu GTP binding domain AVS54_RS13370 PF04760 Translation initiation factor IF-2, N-terminal region AVS54_RS13370 PF08364 Bacterial translation initiation factor IF-2 associated region AVS54_RS13375 PF13184 NusA-like KH domain AVS54_RS13375 PF08529 NusA N-terminal domain AVS54_RS13380 PF02576 RimP N-terminal domain AVS54_RS13380 PF17384 RimP C-terminal SH3 domain AVS54_RS13385 PF01479 S4 domain AVS54_RS13385 PF00849 RNA pseudouridylate synthase AVS54_RS13390 PF04079 Segregation and condensation complex subunit ScpB AVS54_RS13400 PF03466 LysR substrate binding domain AVS54_RS13400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS13405 PF00881 Nitroreductase family AVS54_RS13410 PF07683 Cobalamin synthesis protein cobW C-terminal domain AVS54_RS13410 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVS54_RS13430 PF02798 Glutathione S-transferase, N-terminal domain AVS54_RS13430 PF14497 Glutathione S-transferase, C-terminal domain AVS54_RS13435 PF02401 LytB protein AVS54_RS13440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVS54_RS13445 PF04002 RadC-like JAB domain AVS54_RS13450 PF04199 Putative cyclase AVS54_RS13455 PF03301 Tryptophan 2,3-dioxygenase AVS54_RS13460 PF01197 Ribosomal protein L31 AVS54_RS13470 PF01554 MatE AVS54_RS13485 PF18073 Rubredoxin metal binding domain AVS54_RS13490 PF12450 von Willebrand factor AVS54_RS13490 PF00092 von Willebrand factor type A domain AVS54_RS13490 PF12034 Domain of unknown function (DUF3520) AVS54_RS13495 PF04545 Sigma-70, region 4 AVS54_RS13495 PF04542 Sigma-70 region 2 AVS54_RS13515 PF01168 Alanine racemase, N-terminal domain AVS54_RS13515 PF00842 Alanine racemase, C-terminal domain AVS54_RS13530 PF01593 Flavin containing amine oxidoreductase AVS54_RS13530 PF01593 Flavin containing amine oxidoreductase AVS54_RS13535 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AVS54_RS13545 PF01061 ABC-2 type transporter AVS54_RS13550 PF00005 ABC transporter AVS54_RS13570 PF02424 ApbE family AVS54_RS13575 PF00667 FAD binding domain AVS54_RS13575 PF00258 Flavodoxin AVS54_RS13575 PF00175 Oxidoreductase NAD-binding domain AVS54_RS13585 PF07969 Amidohydrolase family AVS54_RS13590 PF03466 LysR substrate binding domain AVS54_RS13590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS13600 PF09370 Phosphoenolpyruvate hydrolase-like AVS54_RS13615 PF03797 Autotransporter beta-domain AVS54_RS13615 PF03212 Pertactin AVS54_RS13620 PF03797 Autotransporter beta-domain AVS54_RS13620 PF03212 Pertactin AVS54_RS13635 PF10431 C-terminal, D2-small domain, of ClpB protein AVS54_RS13635 PF00004 ATPase family associated with various cellular activities (AAA) AVS54_RS13635 PF07724 AAA domain (Cdc48 subfamily) AVS54_RS13635 PF02861 Clp amino terminal domain, pathogenicity island component AVS54_RS13635 PF17871 AAA lid domain AVS54_RS13640 PF13545 Crp-like helix-turn-helix domain AVS54_RS13640 PF00027 Cyclic nucleotide-binding domain AVS54_RS13655 PF00293 NUDIX domain AVS54_RS13660 PF12843 Putative quorum-sensing-regulated virulence factor AVS54_RS13670 PF12680 SnoaL-like domain AVS54_RS13670 PF08281 Sigma-70, region 4 AVS54_RS13670 PF04542 Sigma-70 region 2 AVS54_RS13675 PF02627 Carboxymuconolactone decarboxylase family AVS54_RS13705 PF00155 Aminotransferase class I and II AVS54_RS13710 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS13715 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS13720 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS13725 PF00005 ABC transporter AVS54_RS13750 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVS54_RS13775 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS13780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVS54_RS13780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVS54_RS13785 PF03466 LysR substrate binding domain AVS54_RS13785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS13795 PF02016 LD-carboxypeptidase N-terminal domain AVS54_RS13795 PF17676 LD-carboxypeptidase C-terminal domain AVS54_RS13810 PF07690 Major Facilitator Superfamily AVS54_RS13820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS13820 PF03466 LysR substrate binding domain AVS54_RS13825 PF13378 Enolase C-terminal domain-like AVS54_RS13825 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AVS54_RS13830 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS13850 PF02567 Phenazine biosynthesis-like protein AVS54_RS13860 PF03239 Iron permease FTR1 family AVS54_RS13870 PF10634 Fe2+ transport protein AVS54_RS13875 PF07879 PHB/PHA accumulation regulator DNA-binding domain AVS54_RS13875 PF05233 PHB accumulation regulatory domain AVS54_RS13880 PF00106 short chain dehydrogenase AVS54_RS13885 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AVS54_RS13890 PF02578 Multi-copper polyphenol oxidoreductase laccase AVS54_RS13895 PF00849 RNA pseudouridylate synthase AVS54_RS13895 PF01479 S4 domain AVS54_RS13900 PF13525 Outer membrane lipoprotein AVS54_RS13905 PF13307 Helicase C-terminal domain AVS54_RS13905 PF04851 Type III restriction enzyme, res subunit AVS54_RS13910 PF09371 Tex-like protein N-terminal domain AVS54_RS13910 PF16921 Tex protein YqgF-like domain AVS54_RS13910 PF17674 HHH domain AVS54_RS13910 PF00575 S1 RNA binding domain AVS54_RS13915 PF00579 tRNA synthetases class I (W and Y) AVS54_RS13940 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS13950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS13950 PF03466 LysR substrate binding domain AVS54_RS13960 PF03969 AFG1-like ATPase AVS54_RS13965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVS54_RS13965 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS13970 PF00364 Biotin-requiring enzyme AVS54_RS13970 PF02817 e3 binding domain AVS54_RS13970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVS54_RS13975 PF16870 2-oxoglutarate dehydrogenase C-terminal AVS54_RS13975 PF02779 Transketolase, pyrimidine binding domain AVS54_RS13975 PF16078 2-oxoglutarate dehydrogenase N-terminus AVS54_RS13975 PF00676 Dehydrogenase E1 component AVS54_RS13985 PF01037 Lrp/AsnC ligand binding domain AVS54_RS13990 PF00456 Transketolase, thiamine diphosphate binding domain AVS54_RS13990 PF17831 Pyruvate dehydrogenase E1 component middle domain AVS54_RS13995 PF00390 Malic enzyme, N-terminal domain AVS54_RS13995 PF01515 Phosphate acetyl/butaryl transferase AVS54_RS13995 PF03949 Malic enzyme, NAD binding domain AVS54_RS14000 PF16970 Type-1 fimbrial protein, A AVS54_RS14010 PF03449 Transcription elongation factor, N-terminal AVS54_RS14010 PF01272 Transcription elongation factor, GreA/GreB, C-term AVS54_RS14015 PF02811 PHP domain AVS54_RS14025 PF00753 Metallo-beta-lactamase superfamily AVS54_RS14025 PF03772 Competence protein AVS54_RS14025 PF13567 Domain of unknown function (DUF4131) AVS54_RS14055 PF01026 TatD related DNase AVS54_RS14060 PF00005 ABC transporter AVS54_RS14065 PF02687 FtsX-like permease family AVS54_RS14065 PF12704 MacB-like periplasmic core domain AVS54_RS14075 PF17768 RecJ OB domain AVS54_RS14075 PF02272 DHHA1 domain AVS54_RS14075 PF01368 DHH family AVS54_RS14085 PF00106 short chain dehydrogenase AVS54_RS14090 PF01336 OB-fold nucleic acid binding domain AVS54_RS14090 PF00152 tRNA synthetases class II (D, K and N) AVS54_RS14100 PF00440 Bacterial regulatory proteins, tetR family AVS54_RS14100 PF17932 Tetracyclin repressor-like, C-terminal domain AVS54_RS14105 PF00501 AMP-binding enzyme AVS54_RS14110 PF00005 ABC transporter AVS54_RS14120 PF11862 Domain of unknown function (DUF3382) AVS54_RS14120 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS14130 PF00005 ABC transporter AVS54_RS14130 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVS54_RS14140 PF07689 KaiB domain AVS54_RS14140 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS14140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS14145 PF00072 Response regulator receiver domain AVS54_RS14145 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS14150 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AVS54_RS14160 PF03631 Virulence factor BrkB AVS54_RS14175 PF01207 Dihydrouridine synthase (Dus) AVS54_RS14180 PF01636 Phosphotransferase enzyme family AVS54_RS14205 PF01985 CRS1 / YhbY (CRM) domain AVS54_RS14210 PF01728 FtsJ-like methyltransferase AVS54_RS14215 PF01434 Peptidase family M41 AVS54_RS14215 PF00004 ATPase family associated with various cellular activities (AAA) AVS54_RS14215 PF17862 AAA+ lid domain AVS54_RS14215 PF06480 FtsH Extracellular AVS54_RS14220 PF00809 Pterin binding enzyme AVS54_RS14225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVS54_RS14225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVS54_RS14225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVS54_RS14225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVS54_RS14235 PF02541 Ppx/GppA phosphatase family AVS54_RS14240 PF17941 Polyphosphate kinase C-terminal domain 1 AVS54_RS14240 PF13090 Polyphosphate kinase C-terminal domain 2 AVS54_RS14240 PF13089 Polyphosphate kinase N-terminal domain AVS54_RS14240 PF02503 Polyphosphate kinase middle domain AVS54_RS14245 PF12849 PBP superfamily domain AVS54_RS14250 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS14255 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS14260 PF00005 ABC transporter AVS54_RS14275 PF01337 Barstar (barnase inhibitor) AVS54_RS14285 PF00390 Malic enzyme, N-terminal domain AVS54_RS14285 PF03949 Malic enzyme, NAD binding domain AVS54_RS14285 PF01515 Phosphate acetyl/butaryl transferase AVS54_RS14295 PF00155 Aminotransferase class I and II AVS54_RS14300 PF01464 Transglycosylase SLT domain AVS54_RS14300 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AVS54_RS14305 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AVS54_RS14330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVS54_RS14330 PF10414 Sirohaem synthase dimerisation region AVS54_RS14330 PF14824 Sirohaem biosynthesis protein central AVS54_RS14335 PF03212 Pertactin AVS54_RS14335 PF03797 Autotransporter beta-domain AVS54_RS14350 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AVS54_RS14355 PF02547 Queuosine biosynthesis protein AVS54_RS14360 PF01702 Queuine tRNA-ribosyltransferase AVS54_RS14365 PF02699 Preprotein translocase subunit AVS54_RS14370 PF07549 SecD/SecF GG Motif AVS54_RS14370 PF13721 SecD export protein N-terminal TM region AVS54_RS14370 PF02355 Protein export membrane protein AVS54_RS14375 PF07549 SecD/SecF GG Motif AVS54_RS14375 PF02355 Protein export membrane protein AVS54_RS14390 PF00919 Uncharacterized protein family UPF0004 AVS54_RS14390 PF01938 TRAM domain AVS54_RS14390 PF04055 Radical SAM superfamily AVS54_RS14395 PF02562 PhoH-like protein AVS54_RS14400 PF02130 Uncharacterized protein family UPF0054 AVS54_RS14405 PF00571 CBS domain AVS54_RS14405 PF03471 Transporter associated domain AVS54_RS14410 PF00795 Carbon-nitrogen hydrolase AVS54_RS14415 PF00248 Aldo/keto reductase family AVS54_RS14440 PF04344 Chemotaxis phosphatase, CheZ AVS54_RS14445 PF00072 Response regulator receiver domain AVS54_RS14450 PF00072 Response regulator receiver domain AVS54_RS14450 PF01339 CheB methylesterase AVS54_RS14460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVS54_RS14460 PF02203 Tar ligand binding domain homologue AVS54_RS14460 PF00672 HAMP domain AVS54_RS14465 PF01584 CheW-like domain AVS54_RS14470 PF01584 CheW-like domain AVS54_RS14470 PF09078 CheY binding AVS54_RS14470 PF02895 Signal transducing histidine kinase, homodimeric domain AVS54_RS14470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS14470 PF01627 Hpt domain AVS54_RS14475 PF00072 Response regulator receiver domain AVS54_RS14480 PF00691 OmpA family AVS54_RS14480 PF13677 Membrane MotB of proton-channel complex MotA/MotB AVS54_RS14485 PF01618 MotA/TolQ/ExbB proton channel family AVS54_RS14490 PF05280 Flagellar transcriptional activator (FlhC) AVS54_RS14495 PF05247 Flagellar transcriptional activator (FlhD) AVS54_RS14500 PF04545 Sigma-70, region 4 AVS54_RS14500 PF04539 Sigma-70 region 3 AVS54_RS14500 PF04542 Sigma-70 region 2 AVS54_RS14510 PF01176 Translation initiation factor 1A / IF-1 AVS54_RS14520 PF01476 LysM domain AVS54_RS14520 PF08525 Opacity-associated protein A N-terminal motif AVS54_RS14520 PF01551 Peptidase family M23 AVS54_RS14530 PF00994 Probable molybdopterin binding domain AVS54_RS14540 PF03591 AzlC protein AVS54_RS14550 PF00226 DnaJ domain AVS54_RS14550 PF01556 DnaJ C terminal domain AVS54_RS14575 PF02798 Glutathione S-transferase, N-terminal domain AVS54_RS14575 PF14834 Glutathione S-transferase, C-terminal domain AVS54_RS14580 PF11339 Protein of unknown function (DUF3141) AVS54_RS14585 PF01515 Phosphate acetyl/butaryl transferase AVS54_RS14590 PF00871 Acetokinase family AVS54_RS14600 PF00162 Phosphoglycerate kinase AVS54_RS14605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVS54_RS14605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVS54_RS14610 PF00456 Transketolase, thiamine diphosphate binding domain AVS54_RS14610 PF02780 Transketolase, C-terminal domain AVS54_RS14610 PF02779 Transketolase, pyrimidine binding domain AVS54_RS14615 PF04452 RNA methyltransferase AVS54_RS14625 PF00669 Bacterial flagellin N-terminal helical region AVS54_RS14625 PF00700 Bacterial flagellin C-terminal helical region AVS54_RS14630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVS54_RS14630 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS14635 PF00364 Biotin-requiring enzyme AVS54_RS14635 PF02817 e3 binding domain AVS54_RS14635 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVS54_RS14640 PF00456 Transketolase, thiamine diphosphate binding domain AVS54_RS14640 PF17831 Pyruvate dehydrogenase E1 component middle domain AVS54_RS14645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS14645 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS14645 PF00989 PAS fold AVS54_RS14650 PF00196 Bacterial regulatory proteins, luxR family AVS54_RS14650 PF00072 Response regulator receiver domain AVS54_RS14655 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AVS54_RS14655 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AVS54_RS14660 PF01432 Peptidase family M3 AVS54_RS14665 PF02630 SCO1/SenC AVS54_RS14675 PF02321 Outer membrane efflux protein AVS54_RS14680 PF00873 AcrB/AcrD/AcrF family AVS54_RS14685 PF00529 HlyD membrane-fusion protein of T1SS AVS54_RS14685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVS54_RS14690 PF03466 LysR substrate binding domain AVS54_RS14690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS14695 PF01479 S4 domain AVS54_RS14695 PF00849 RNA pseudouridylate synthase AVS54_RS14700 PF04345 Chorismate lyase AVS54_RS14705 PF07690 Major Facilitator Superfamily AVS54_RS14715 PF00248 Aldo/keto reductase family AVS54_RS14725 PF00293 NUDIX domain AVS54_RS14730 PF01245 Ribosomal protein L19 AVS54_RS14745 PF04055 Radical SAM superfamily AVS54_RS14755 PF01507 Phosphoadenosine phosphosulfate reductase family AVS54_RS14760 PF17850 CysA C-terminal regulatory domain AVS54_RS14760 PF12857 TOBE-like domain AVS54_RS14760 PF00005 ABC transporter AVS54_RS14765 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS14770 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS14785 PF10417 C-terminal domain of 1-Cys peroxiredoxin AVS54_RS14785 PF00578 AhpC/TSA family AVS54_RS14790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS14790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS14790 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS14790 PF12806 Acetyl-CoA dehydrogenase C-terminal like AVS54_RS14795 PF00766 Electron transfer flavoprotein FAD-binding domain AVS54_RS14795 PF01012 Electron transfer flavoprotein domain AVS54_RS14800 PF01012 Electron transfer flavoprotein domain AVS54_RS14805 PF00850 Histone deacetylase domain AVS54_RS14810 PF13406 Transglycosylase SLT domain AVS54_RS14815 PF00291 Pyridoxal-phosphate dependent enzyme AVS54_RS14825 PF10531 SLBB domain AVS54_RS14830 PF01370 NAD dependent epimerase/dehydratase family AVS54_RS14835 PF00294 pfkB family carbohydrate kinase AVS54_RS14840 PF18073 Rubredoxin metal binding domain AVS54_RS14850 PF00216 Bacterial DNA-binding protein AVS54_RS14855 PF00575 S1 RNA binding domain AVS54_RS14860 PF02224 Cytidylate kinase AVS54_RS14865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVS54_RS14870 PF02153 Prephenate dehydrogenase AVS54_RS14875 PF01817 Chorismate mutase type II AVS54_RS14875 PF01842 ACT domain AVS54_RS14875 PF00800 Prephenate dehydratase AVS54_RS14880 PF00266 Aminotransferase class-V AVS54_RS14885 PF00521 DNA gyrase/topoisomerase IV, subunit A AVS54_RS14885 PF03989 DNA gyrase C-terminal domain, beta-propeller AVS54_RS14890 PF00691 OmpA family AVS54_RS14900 PF13419 Haloacid dehalogenase-like hydrolase AVS54_RS14905 PF07690 Major Facilitator Superfamily AVS54_RS14930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS14930 PF03466 LysR substrate binding domain AVS54_RS14935 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS14945 PF11799 impB/mucB/samB family C-terminal domain AVS54_RS14945 PF00817 impB/mucB/samB family AVS54_RS14945 PF11798 IMS family HHH motif AVS54_RS14960 PF00326 Prolyl oligopeptidase family AVS54_RS14965 PF17092 Penicillin-binding protein OB-like domain AVS54_RS14965 PF00912 Transglycosylase AVS54_RS14965 PF00905 Penicillin binding protein transpeptidase domain AVS54_RS14970 PF00149 Calcineurin-like phosphoesterase AVS54_RS14985 PF00248 Aldo/keto reductase family AVS54_RS14990 PF00248 Aldo/keto reductase family AVS54_RS14995 PF00005 ABC transporter AVS54_RS14995 PF00664 ABC transporter transmembrane region AVS54_RS15040 PF01039 Carboxyl transferase domain AVS54_RS15045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVS54_RS15045 PF00289 Biotin carboxylase, N-terminal domain AVS54_RS15045 PF02785 Biotin carboxylase C-terminal domain AVS54_RS15050 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS15050 PF07702 UTRA domain AVS54_RS15070 PF00682 HMGL-like AVS54_RS15070 PF02436 Conserved carboxylase domain AVS54_RS15070 PF00364 Biotin-requiring enzyme AVS54_RS15075 PF00364 Biotin-requiring enzyme AVS54_RS15085 PF01966 HD domain AVS54_RS15105 PF07238 PilZ domain AVS54_RS15105 PF07317 Flagellar regulator YcgR AVS54_RS15125 PF05724 Thiopurine S-methyltransferase (TPMT) AVS54_RS15130 PF00664 ABC transporter transmembrane region AVS54_RS15130 PF00005 ABC transporter AVS54_RS15145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVS54_RS15145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVS54_RS15145 PF00205 Thiamine pyrophosphate enzyme, central domain AVS54_RS15150 PF10369 Small subunit of acetolactate synthase AVS54_RS15155 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AVS54_RS15155 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AVS54_RS15160 PF01066 CDP-alcohol phosphatidyltransferase AVS54_RS15175 PF00312 Ribosomal protein S15 AVS54_RS15180 PF00013 KH domain AVS54_RS15180 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AVS54_RS15180 PF01138 3' exoribonuclease family, domain 1 AVS54_RS15180 PF03725 3' exoribonuclease family, domain 2 AVS54_RS15180 PF00575 S1 RNA binding domain AVS54_RS15195 PF13291 ACT domain AVS54_RS15195 PF00291 Pyridoxal-phosphate dependent enzyme AVS54_RS15210 PF08990 Erythronolide synthase docking AVS54_RS15210 PF00698 Acyl transferase domain AVS54_RS15210 PF08240 Alcohol dehydrogenase GroES-like domain AVS54_RS15210 PF00109 Beta-ketoacyl synthase, N-terminal domain AVS54_RS15210 PF14765 Polyketide synthase dehydratase AVS54_RS15210 PF00550 Phosphopantetheine attachment site AVS54_RS15210 PF16197 Ketoacyl-synthetase C-terminal extension AVS54_RS15210 PF08659 KR domain AVS54_RS15210 PF02801 Beta-ketoacyl synthase, C-terminal domain AVS54_RS15215 PF00121 Triosephosphate isomerase AVS54_RS15220 PF03840 Preprotein translocase SecG subunit AVS54_RS15230 PF02028 BCCT, betaine/carnitine/choline family transporter AVS54_RS15240 PF07476 Methylaspartate ammonia-lyase C-terminus AVS54_RS15240 PF05034 Methylaspartate ammonia-lyase N-terminus AVS54_RS15245 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS15260 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS15275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS15275 PF03466 LysR substrate binding domain AVS54_RS15280 PF01053 Cys/Met metabolism PLP-dependent enzyme AVS54_RS15285 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVS54_RS15300 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS15305 PF01266 FAD dependent oxidoreductase AVS54_RS15315 PF01968 Hydantoinase/oxoprolinase AVS54_RS15315 PF05378 Hydantoinase/oxoprolinase N-terminal region AVS54_RS15325 PF00127 Copper binding proteins, plastocyanin/azurin family AVS54_RS15335 PF02321 Outer membrane efflux protein AVS54_RS15340 PF00873 AcrB/AcrD/AcrF family AVS54_RS15345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVS54_RS15350 PF01638 HxlR-like helix-turn-helix AVS54_RS15360 PF02028 BCCT, betaine/carnitine/choline family transporter AVS54_RS15365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS15365 PF03466 LysR substrate binding domain AVS54_RS15370 PF00781 Diacylglycerol kinase catalytic domain AVS54_RS15380 PF01569 PAP2 superfamily AVS54_RS15410 PF13609 Gram-negative porin AVS54_RS15415 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AVS54_RS15420 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AVS54_RS15425 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AVS54_RS15430 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AVS54_RS15440 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AVS54_RS15440 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AVS54_RS15440 PF10531 SLBB domain AVS54_RS15445 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AVS54_RS15445 PF00384 Molybdopterin oxidoreductase AVS54_RS15445 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AVS54_RS15450 PF00146 NADH dehydrogenase AVS54_RS15455 PF12838 4Fe-4S dicluster domain AVS54_RS15460 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AVS54_RS15465 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AVS54_RS15470 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AVS54_RS15470 PF00361 Proton-conducting membrane transporter AVS54_RS15475 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AVS54_RS15475 PF00361 Proton-conducting membrane transporter AVS54_RS15480 PF00361 Proton-conducting membrane transporter AVS54_RS15490 PF00593 TonB dependent receptor AVS54_RS15490 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS15495 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS15495 PF00593 TonB dependent receptor AVS54_RS15510 PF00205 Thiamine pyrophosphate enzyme, central domain AVS54_RS15510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVS54_RS15510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVS54_RS15515 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS15520 PF03466 LysR substrate binding domain AVS54_RS15520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS15530 PF03461 TRCF domain AVS54_RS15530 PF02559 CarD-like/TRCF domain AVS54_RS15530 PF17757 UvrB interaction domain AVS54_RS15530 PF00271 Helicase conserved C-terminal domain AVS54_RS15530 PF00270 DEAD/DEAH box helicase AVS54_RS15535 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AVS54_RS15540 PF02542 YgbB family AVS54_RS15550 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AVS54_RS15555 PF11940 Domain of unknown function (DUF3458) Ig-like fold AVS54_RS15555 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AVS54_RS15555 PF01433 Peptidase family M1 domain AVS54_RS15575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVS54_RS15575 PF00205 Thiamine pyrophosphate enzyme, central domain AVS54_RS15575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVS54_RS15585 PF09084 NMT1/THI5 like AVS54_RS15590 PF00005 ABC transporter AVS54_RS15595 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS15605 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS15605 PF00501 AMP-binding enzyme AVS54_RS15610 PF00107 Zinc-binding dehydrogenase AVS54_RS15610 PF08240 Alcohol dehydrogenase GroES-like domain AVS54_RS15615 PF07729 FCD domain AVS54_RS15615 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS15625 PF07729 FCD domain AVS54_RS15625 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS15630 PF00205 Thiamine pyrophosphate enzyme, central domain AVS54_RS15630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVS54_RS15630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVS54_RS15650 PF01063 Amino-transferase class IV AVS54_RS15655 PF00005 ABC transporter AVS54_RS15660 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS15665 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS15670 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS15675 PF03466 LysR substrate binding domain AVS54_RS15675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS15680 PF02321 Outer membrane efflux protein AVS54_RS15685 PF13533 Biotin-lipoyl like AVS54_RS15690 PF00005 ABC transporter AVS54_RS15690 PF00664 ABC transporter transmembrane region AVS54_RS15690 PF03412 Peptidase C39 family AVS54_RS15695 PF03497 Anthrax toxin LF subunit AVS54_RS15695 PF02382 N-terminal domain in RTX protein AVS54_RS15695 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AVS54_RS15705 PF02794 RTX toxin acyltransferase family AVS54_RS15710 PF00171 Aldehyde dehydrogenase family AVS54_RS15715 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS15720 PF01266 FAD dependent oxidoreductase AVS54_RS15725 PF02538 Hydantoinase B/oxoprolinase AVS54_RS15730 PF05378 Hydantoinase/oxoprolinase N-terminal region AVS54_RS15730 PF01968 Hydantoinase/oxoprolinase AVS54_RS15735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS15735 PF03466 LysR substrate binding domain AVS54_RS15745 PF00348 Polyprenyl synthetase AVS54_RS15755 PF00829 Ribosomal prokaryotic L21 protein AVS54_RS15760 PF01016 Ribosomal L27 protein AVS54_RS15765 PF01926 50S ribosome-binding GTPase AVS54_RS15765 PF01018 GTP1/OBG AVS54_RS15770 PF01472 PUA domain AVS54_RS15770 PF00696 Amino acid kinase family AVS54_RS15815 PF04773 FecR protein AVS54_RS15815 PF16220 Domain of unknown function (DUF4880) AVS54_RS15820 PF00593 TonB dependent receptor AVS54_RS15820 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS15825 PF04264 YceI-like domain AVS54_RS15835 PF16653 Saccharopine dehydrogenase C-terminal domain AVS54_RS15835 PF03435 Saccharopine dehydrogenase NADP binding domain AVS54_RS15840 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AVS54_RS15860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS15865 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS15870 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS15875 PF00005 ABC transporter AVS54_RS15875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS15880 PF01425 Amidase AVS54_RS15885 PF00202 Aminotransferase class-III AVS54_RS15905 PF00691 OmpA family AVS54_RS15905 PF04972 BON domain AVS54_RS15910 PF01329 Pterin 4 alpha carbinolamine dehydratase AVS54_RS15920 PF00483 Nucleotidyl transferase AVS54_RS15925 PF01636 Phosphotransferase enzyme family AVS54_RS15930 PF04453 LPS transport system D AVS54_RS15935 PF00639 PPIC-type PPIASE domain AVS54_RS15935 PF09312 SurA N-terminal domain AVS54_RS15940 PF00398 Ribosomal RNA adenine dimethylase AVS54_RS15945 PF02595 Glycerate kinase family AVS54_RS15950 PF00224 Pyruvate kinase, barrel domain AVS54_RS15950 PF02887 Pyruvate kinase, alpha/beta domain AVS54_RS15955 PF07670 Nucleoside recognition AVS54_RS15960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS15960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS15960 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS15960 PF09317 Domain of unknown function (DUF1974) AVS54_RS15980 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS15985 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS15990 PF00005 ABC transporter AVS54_RS15995 PF01032 FecCD transport family AVS54_RS16005 PF00691 OmpA family AVS54_RS16010 PF07676 WD40-like Beta Propeller Repeat AVS54_RS16010 PF04052 TolB amino-terminal domain AVS54_RS16020 PF02472 Biopolymer transport protein ExbD/TolR AVS54_RS16025 PF01618 MotA/TolQ/ExbB proton channel family AVS54_RS16030 PF03061 Thioesterase superfamily AVS54_RS16035 PF04073 Aminoacyl-tRNA editing domain AVS54_RS16035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVS54_RS16035 PF03129 Anticodon binding domain AVS54_RS16040 PF00293 NUDIX domain AVS54_RS16045 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS16045 PF00072 Response regulator receiver domain AVS54_RS16055 PF02586 SOS response associated peptidase (SRAP) AVS54_RS16125 PF06791 Prophage tail length tape measure protein AVS54_RS16270 PF03180 NLPA lipoprotein AVS54_RS16280 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AVS54_RS16280 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AVS54_RS16285 PF00005 ABC transporter AVS54_RS16290 PF00005 ABC transporter AVS54_RS16290 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVS54_RS16295 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS16300 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS16305 PF13458 Periplasmic binding protein AVS54_RS16310 PF01425 Amidase AVS54_RS16315 PF00484 Carbonic anhydrase AVS54_RS16330 PF00570 HRDC domain AVS54_RS16330 PF09382 RQC domain AVS54_RS16330 PF00271 Helicase conserved C-terminal domain AVS54_RS16330 PF16124 RecQ zinc-binding AVS54_RS16330 PF00270 DEAD/DEAH box helicase AVS54_RS16335 PF05496 Holliday junction DNA helicase RuvB P-loop domain AVS54_RS16335 PF17864 RuvB AAA lid domain AVS54_RS16335 PF05491 RuvB C-terminal winged helix domain AVS54_RS16340 PF00291 Pyridoxal-phosphate dependent enzyme AVS54_RS16345 PF01370 NAD dependent epimerase/dehydratase family AVS54_RS16350 PF07499 RuvA, C-terminal domain AVS54_RS16350 PF01330 RuvA N terminal domain AVS54_RS16355 PF02075 Crossover junction endodeoxyribonuclease RuvC AVS54_RS16360 PF02142 MGS-like domain AVS54_RS16360 PF01808 AICARFT/IMPCHase bienzyme AVS54_RS16365 PF02954 Bacterial regulatory protein, Fis family AVS54_RS16370 PF01207 Dihydrouridine synthase (Dus) AVS54_RS16375 PF01494 FAD binding domain AVS54_RS16385 PF00557 Metallopeptidase family M24 AVS54_RS16385 PF05195 Aminopeptidase P, N-terminal domain AVS54_RS16410 PF13609 Gram-negative porin AVS54_RS16420 PF00483 Nucleotidyl transferase AVS54_RS16425 PF13181 Tetratricopeptide repeat AVS54_RS16425 PF01435 Peptidase family M48 AVS54_RS16430 PF00561 alpha/beta hydrolase fold AVS54_RS16445 PF01063 Amino-transferase class IV AVS54_RS16460 PF00270 DEAD/DEAH box helicase AVS54_RS16460 PF00271 Helicase conserved C-terminal domain AVS54_RS16480 PF00994 Probable molybdopterin binding domain AVS54_RS16480 PF02464 Competence-damaged protein AVS54_RS16480 PF18146 Damage-inducible protein CinA KH domain AVS54_RS16485 PF01614 Bacterial transcriptional regulator AVS54_RS16485 PF09339 IclR helix-turn-helix domain AVS54_RS16490 PF05785 Rho-activating domain of cytotoxic necrotizing factor AVS54_RS16490 PF18807 Tripartite Tc toxins repeat AVS54_RS16495 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS16505 PF01180 Dihydroorotate dehydrogenase AVS54_RS16510 PF04376 Arginine-tRNA-protein transferase, N terminus AVS54_RS16510 PF04377 Arginine-tRNA-protein transferase, C terminus AVS54_RS16515 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AVS54_RS16525 PF03466 LysR substrate binding domain AVS54_RS16525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS16565 PF07729 FCD domain AVS54_RS16565 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS16570 PF00205 Thiamine pyrophosphate enzyme, central domain AVS54_RS16570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVS54_RS16570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVS54_RS16575 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS16580 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AVS54_RS16585 PF00390 Malic enzyme, N-terminal domain AVS54_RS16585 PF03949 Malic enzyme, NAD binding domain AVS54_RS16585 PF01515 Phosphate acetyl/butaryl transferase AVS54_RS16595 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS16600 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS16605 PF00005 ABC transporter AVS54_RS16605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS16620 PF03466 LysR substrate binding domain AVS54_RS16620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS16635 PF01022 Bacterial regulatory protein, arsR family AVS54_RS16650 PF03594 Benzoate membrane transport protein AVS54_RS16655 PF00037 4Fe-4S binding domain AVS54_RS16660 PF01467 Cytidylyltransferase-like AVS54_RS16670 PF00448 SRP54-type protein, GTPase domain AVS54_RS16670 PF02881 SRP54-type protein, helical bundle domain AVS54_RS16680 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS16685 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS16690 PF00005 ABC transporter AVS54_RS16700 PF00005 ABC transporter AVS54_RS16720 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AVS54_RS16720 PF00925 GTP cyclohydrolase II AVS54_RS16725 PF00885 6,7-dimethyl-8-ribityllumazine synthase AVS54_RS16730 PF01029 NusB family AVS54_RS16735 PF02769 AIR synthase related protein, C-terminal domain AVS54_RS16735 PF00586 AIR synthase related protein, N-terminal domain AVS54_RS16740 PF04608 Phosphatidylglycerophosphatase A AVS54_RS16745 PF18146 Damage-inducible protein CinA KH domain AVS54_RS16745 PF00994 Probable molybdopterin binding domain AVS54_RS16745 PF02464 Competence-damaged protein AVS54_RS16750 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AVS54_RS16755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS16760 PF01219 Prokaryotic diacylglycerol kinase AVS54_RS16765 PF03631 Virulence factor BrkB AVS54_RS16770 PF03212 Pertactin AVS54_RS16770 PF03797 Autotransporter beta-domain AVS54_RS16775 PF00118 TCP-1/cpn60 chaperonin family AVS54_RS16780 PF00166 Chaperonin 10 Kd subunit AVS54_RS16800 PF00890 FAD binding domain AVS54_RS16810 PF03466 LysR substrate binding domain AVS54_RS16810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS16815 PF00890 FAD binding domain AVS54_RS16830 PF00990 Diguanylate cyclase, GGDEF domain AVS54_RS16835 PF00072 Response regulator receiver domain AVS54_RS16865 PF12867 DinB superfamily AVS54_RS16865 PF03781 Sulfatase-modifying factor enzyme 1 AVS54_RS16870 PF10017 Histidine-specific methyltransferase, SAM-dependent AVS54_RS16880 PF13396 Phospholipase_D-nuclease N-terminal AVS54_RS16880 PF13091 PLD-like domain AVS54_RS16890 PF01645 Conserved region in glutamate synthase AVS54_RS16895 PF04143 Sulphur transport AVS54_RS16900 PF03547 Membrane transport protein AVS54_RS16905 PF13673 Acetyltransferase (GNAT) domain AVS54_RS16925 PF00575 S1 RNA binding domain AVS54_RS16925 PF00773 RNB domain AVS54_RS16925 PF08206 Ribonuclease B OB domain AVS54_RS16925 PF08461 Ribonuclease R winged-helix domain AVS54_RS16925 PF17876 Cold shock domain AVS54_RS16930 PF08032 RNA 2'-O ribose methyltransferase substrate binding AVS54_RS16930 PF00588 SpoU rRNA Methylase family AVS54_RS16935 PF01053 Cys/Met metabolism PLP-dependent enzyme AVS54_RS16940 PF13640 2OG-Fe(II) oxygenase superfamily AVS54_RS16940 PF18331 PKHD-type hydroxylase C-terminal domain AVS54_RS16945 PF00216 Bacterial DNA-binding protein AVS54_RS16960 PF01618 MotA/TolQ/ExbB proton channel family AVS54_RS16965 PF02472 Biopolymer transport protein ExbD/TolR AVS54_RS16970 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS16970 PF00072 Response regulator receiver domain AVS54_RS16975 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS16975 PF08521 Two-component sensor kinase N-terminal AVS54_RS16975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS16980 PF02705 K+ potassium transporter AVS54_RS16985 PF00764 Arginosuccinate synthase AVS54_RS16990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVS54_RS16990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVS54_RS16995 PF00202 Aminotransferase class-III AVS54_RS17005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS17005 PF03466 LysR substrate binding domain AVS54_RS17015 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVS54_RS17015 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVS54_RS17020 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS17035 PF07729 FCD domain AVS54_RS17035 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS17045 PF07690 Major Facilitator Superfamily AVS54_RS17055 PF02627 Carboxymuconolactone decarboxylase family AVS54_RS17060 PF00578 AhpC/TSA family AVS54_RS17065 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS17065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS17065 PF00672 HAMP domain AVS54_RS17075 PF00072 Response regulator receiver domain AVS54_RS17075 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS17080 PF00814 Glycoprotease family AVS54_RS17085 PF03167 Uracil DNA glycosylase superfamily AVS54_RS17090 PF07690 Major Facilitator Superfamily AVS54_RS17095 PF02463 RecF/RecN/SMC N terminal domain AVS54_RS17095 PF06470 SMC proteins Flexible Hinge Domain AVS54_RS17105 PF00533 BRCA1 C Terminus (BRCT) domain AVS54_RS17105 PF01653 NAD-dependent DNA ligase adenylation domain AVS54_RS17105 PF03120 NAD-dependent DNA ligase OB-fold domain AVS54_RS17105 PF12826 Helix-hairpin-helix motif AVS54_RS17105 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AVS54_RS17120 PF04279 Intracellular septation protein A AVS54_RS17125 PF01641 SelR domain AVS54_RS17130 PF00005 ABC transporter AVS54_RS17135 PF02361 Cobalt transport protein AVS54_RS17140 PF02632 BioY family AVS54_RS17155 PF00005 ABC transporter AVS54_RS17155 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVS54_RS17160 PF01063 Amino-transferase class IV AVS54_RS17175 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS17185 PF00005 ABC transporter AVS54_RS17190 PF00005 ABC transporter AVS54_RS17190 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVS54_RS17195 PF00633 Helix-hairpin-helix motif AVS54_RS17195 PF00730 HhH-GPD superfamily base excision DNA repair protein AVS54_RS17195 PF10576 Iron-sulfur binding domain of endonuclease III AVS54_RS17200 PF04060 Putative Fe-S cluster AVS54_RS17210 PF00970 Oxidoreductase FAD-binding domain AVS54_RS17210 PF00175 Oxidoreductase NAD-binding domain AVS54_RS17215 PF00037 4Fe-4S binding domain AVS54_RS17215 PF11953 Domain of unknown function (DUF3470) AVS54_RS17220 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AVS54_RS17220 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AVS54_RS17225 PF01042 Endoribonuclease L-PSP AVS54_RS17235 PF06167 Glucose-regulated metallo-peptidase M90 AVS54_RS17240 PF13291 ACT domain AVS54_RS17240 PF04607 Region found in RelA / SpoT proteins AVS54_RS17240 PF02824 TGS domain AVS54_RS17245 PF07687 Peptidase dimerisation domain AVS54_RS17245 PF01546 Peptidase family M20/M25/M40 AVS54_RS17250 PF00291 Pyridoxal-phosphate dependent enzyme AVS54_RS17255 PF00290 Tryptophan synthase alpha chain AVS54_RS17260 PF01039 Carboxyl transferase domain AVS54_RS17260 PF17848 Acetyl-coA carboxylase zinc finger domain AVS54_RS17265 PF09411 Lipid A 3-O-deacylase (PagL) AVS54_RS17280 PF10150 Ribonuclease E/G family AVS54_RS17280 PF00575 S1 RNA binding domain AVS54_RS17280 PF12111 Polyribonucleotide phosphorylase C terminal AVS54_RS17285 PF00849 RNA pseudouridylate synthase AVS54_RS17285 PF01479 S4 domain AVS54_RS17290 PF13419 Haloacid dehalogenase-like hydrolase AVS54_RS17295 PF00174 Oxidoreductase molybdopterin binding domain AVS54_RS17300 PF01794 Ferric reductase like transmembrane component AVS54_RS17310 PF02515 CoA-transferase family III AVS54_RS17315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS17315 PF03466 LysR substrate binding domain AVS54_RS17325 PF02515 CoA-transferase family III AVS54_RS17330 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS17340 PF03466 LysR substrate binding domain AVS54_RS17340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS17345 PF01042 Endoribonuclease L-PSP AVS54_RS17350 PF00175 Oxidoreductase NAD-binding domain AVS54_RS17350 PF00042 Globin AVS54_RS17350 PF00970 Oxidoreductase FAD-binding domain AVS54_RS17355 PF02667 Short chain fatty acid transporter AVS54_RS17360 PF00171 Aldehyde dehydrogenase family AVS54_RS17365 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS17365 PF07729 FCD domain AVS54_RS17375 PF00313 'Cold-shock' DNA-binding domain AVS54_RS17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS17380 PF03466 LysR substrate binding domain AVS54_RS17400 PF00108 Thiolase, N-terminal domain AVS54_RS17400 PF02803 Thiolase, C-terminal domain AVS54_RS17410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS17410 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS17410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS17415 PF03466 LysR substrate binding domain AVS54_RS17415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS17420 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS17425 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS17430 PF02515 CoA-transferase family III AVS54_RS17435 PF03741 Integral membrane protein TerC family AVS54_RS17435 PF03471 Transporter associated domain AVS54_RS17440 PF02308 MgtC family AVS54_RS17445 PF00679 Elongation factor G C-terminus AVS54_RS17445 PF03144 Elongation factor Tu domain 2 AVS54_RS17445 PF00009 Elongation factor Tu GTP binding domain AVS54_RS17445 PF03764 Elongation factor G, domain IV AVS54_RS17445 PF14492 Elongation Factor G, domain II AVS54_RS17450 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS17450 PF00155 Aminotransferase class I and II AVS54_RS17460 PF00582 Universal stress protein family AVS54_RS17465 PF03764 Elongation factor G, domain IV AVS54_RS17465 PF00009 Elongation factor Tu GTP binding domain AVS54_RS17465 PF00679 Elongation factor G C-terminus AVS54_RS17465 PF14492 Elongation Factor G, domain II AVS54_RS17465 PF03144 Elongation factor Tu domain 2 AVS54_RS17475 PF00701 Dihydrodipicolinate synthetase family AVS54_RS17480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS17480 PF03466 LysR substrate binding domain AVS54_RS17485 PF02515 CoA-transferase family III AVS54_RS17490 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS17495 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS17495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS17495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS17500 PF01575 MaoC like domain AVS54_RS17515 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AVS54_RS17515 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AVS54_RS17520 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS17525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS17525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS17525 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS17530 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS17535 PF13380 CoA binding domain AVS54_RS17535 PF13607 Succinyl-CoA ligase like flavodoxin domain AVS54_RS17545 PF00676 Dehydrogenase E1 component AVS54_RS17550 PF02780 Transketolase, C-terminal domain AVS54_RS17550 PF02779 Transketolase, pyrimidine binding domain AVS54_RS17555 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS17560 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVS54_RS17560 PF00364 Biotin-requiring enzyme AVS54_RS17560 PF02817 e3 binding domain AVS54_RS17565 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS17565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS17565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS17570 PF00501 AMP-binding enzyme AVS54_RS17570 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS17580 PF13458 Periplasmic binding protein AVS54_RS17585 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS17590 PF00005 ABC transporter AVS54_RS17590 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVS54_RS17595 PF00005 ABC transporter AVS54_RS17600 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS17600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVS54_RS17615 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS17630 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS17645 PF00899 ThiF family AVS54_RS17650 PF13180 PDZ domain AVS54_RS17650 PF03572 Peptidase family S41 AVS54_RS17655 PF01551 Peptidase family M23 AVS54_RS17660 PF00300 Histidine phosphatase superfamily (branch 1) AVS54_RS17665 PF00581 Rhodanese-like domain AVS54_RS17665 PF17773 UPF0176 acylphosphatase like domain AVS54_RS17665 PF12368 Rhodanase C-terminal AVS54_RS17670 PF00462 Glutaredoxin AVS54_RS17675 PF02556 Preprotein translocase subunit SecB AVS54_RS17680 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AVS54_RS17680 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AVS54_RS17685 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS17690 PF00588 SpoU rRNA Methylase family AVS54_RS17700 PF08241 Methyltransferase domain AVS54_RS17705 PF04107 Glutamate-cysteine ligase family 2(GCS2) AVS54_RS17710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVS54_RS17720 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS17725 PF00005 ABC transporter AVS54_RS17735 PF01799 [2Fe-2S] binding domain AVS54_RS17735 PF00111 2Fe-2S iron-sulfur cluster binding domain AVS54_RS17740 PF03450 CO dehydrogenase flavoprotein C-terminal domain AVS54_RS17740 PF00941 FAD binding domain in molybdopterin dehydrogenase AVS54_RS17745 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVS54_RS17745 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVS54_RS17750 PF03480 Bacterial extracellular solute-binding protein, family 7 AVS54_RS17755 PF00355 Rieske [2Fe-2S] domain AVS54_RS17760 PF14759 Reductase C-terminal AVS54_RS17760 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS17765 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AVS54_RS17765 PF00355 Rieske [2Fe-2S] domain AVS54_RS17775 PF00857 Isochorismatase family AVS54_RS17785 PF00561 alpha/beta hydrolase fold AVS54_RS17790 PF17645 Arylmalonate decarboxylase AVS54_RS17800 PF12804 MobA-like NTP transferase domain AVS54_RS17810 PF01047 MarR family AVS54_RS17815 PF02386 Cation transport protein AVS54_RS17820 PF02254 TrkA-N domain AVS54_RS17820 PF02080 TrkA-C domain AVS54_RS17825 PF00158 Sigma-54 interaction domain AVS54_RS17825 PF02954 Bacterial regulatory protein, Fis family AVS54_RS17825 PF00072 Response regulator receiver domain AVS54_RS17830 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS17830 PF00989 PAS fold AVS54_RS17830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS17830 PF00672 HAMP domain AVS54_RS17840 PF01029 NusB family AVS54_RS17840 PF01189 16S rRNA methyltransferase RsmB/F AVS54_RS17850 PF01958 Domain of unknown function DUF108 AVS54_RS17850 PF03447 Homoserine dehydrogenase, NAD binding domain AVS54_RS17875 PF01810 LysE type translocator AVS54_RS17880 PF03466 LysR substrate binding domain AVS54_RS17880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS17890 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS17895 PF01168 Alanine racemase, N-terminal domain AVS54_RS17900 PF00155 Aminotransferase class I and II AVS54_RS17905 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS17915 PF00682 HMGL-like AVS54_RS17920 PF02481 DNA recombination-mediator protein A AVS54_RS17920 PF17782 DprA winged helix domain AVS54_RS17925 PF01037 Lrp/AsnC ligand binding domain AVS54_RS17930 PF00266 Aminotransferase class-V AVS54_RS17935 PF01327 Polypeptide deformylase AVS54_RS17950 PF02911 Formyl transferase, C-terminal domain AVS54_RS17950 PF00551 Formyl transferase AVS54_RS17960 PF13419 Haloacid dehalogenase-like hydrolase AVS54_RS17970 PF03641 Possible lysine decarboxylase AVS54_RS17980 PF18693 TRAM domain AVS54_RS17980 PF00919 Uncharacterized protein family UPF0004 AVS54_RS17980 PF04055 Radical SAM superfamily AVS54_RS17985 PF01361 Tautomerase enzyme AVS54_RS17990 PF01266 FAD dependent oxidoreductase AVS54_RS17995 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS18000 PF07729 FCD domain AVS54_RS18000 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS18015 PF00202 Aminotransferase class-III AVS54_RS18020 PF00491 Arginase family AVS54_RS18030 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS18035 PF02627 Carboxymuconolactone decarboxylase family AVS54_RS18040 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS18045 PF01614 Bacterial transcriptional regulator AVS54_RS18045 PF09339 IclR helix-turn-helix domain AVS54_RS18050 PF00501 AMP-binding enzyme AVS54_RS18050 PF13193 AMP-binding enzyme C-terminal domain AVS54_RS18055 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS18065 PF12951 Passenger-associated-transport-repeat AVS54_RS18065 PF12951 Passenger-associated-transport-repeat AVS54_RS18085 PF03466 LysR substrate binding domain AVS54_RS18085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS18095 PF14031 Putative serine dehydratase domain AVS54_RS18095 PF01168 Alanine racemase, N-terminal domain AVS54_RS18100 PF07411 Domain of unknown function (DUF1508) AVS54_RS18105 PF01145 SPFH domain / Band 7 family AVS54_RS18115 PF01042 Endoribonuclease L-PSP AVS54_RS18160 PF03837 RecT family AVS54_RS18195 PF00589 Phage integrase family AVS54_RS18200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS18200 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS18215 PF03466 LysR substrate binding domain AVS54_RS18215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS18220 PF02525 Flavodoxin-like fold AVS54_RS18230 PF14849 YidC periplasmic domain AVS54_RS18230 PF02096 60Kd inner membrane protein AVS54_RS18235 PF01809 Putative membrane protein insertion efficiency factor AVS54_RS18240 PF00825 Ribonuclease P AVS54_RS18245 PF00468 Ribosomal protein L34 AVS54_RS18250 PF00308 Bacterial dnaA protein AVS54_RS18250 PF08299 Bacterial dnaA protein helix-turn-helix AVS54_RS18250 PF11638 DnaA N-terminal domain AVS54_RS18255 PF00712 DNA polymerase III beta subunit, N-terminal domain AVS54_RS18255 PF02767 DNA polymerase III beta subunit, central domain AVS54_RS18255 PF02768 DNA polymerase III beta subunit, C-terminal domain AVS54_RS18260 PF01751 Toprim domain AVS54_RS18260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS18260 PF18053 DNA gyrase B subunit insert domain AVS54_RS18260 PF00986 DNA gyrase B subunit, carboxyl terminus AVS54_RS18260 PF00204 DNA gyrase B AVS54_RS18265 PF09339 IclR helix-turn-helix domain AVS54_RS18265 PF01614 Bacterial transcriptional regulator AVS54_RS18270 PF01425 Amidase AVS54_RS18275 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS18280 PF00708 Acylphosphatase AVS54_RS18285 PF01070 FMN-dependent dehydrogenase AVS54_RS18305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS18305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS18305 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS18310 PF00376 MerR family regulatory protein AVS54_RS18310 PF09278 MerR, DNA binding AVS54_RS18325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVS54_RS18325 PF02770 Acyl-CoA dehydrogenase, middle domain AVS54_RS18325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVS54_RS18340 PF01039 Carboxyl transferase domain AVS54_RS18345 PF02785 Biotin carboxylase C-terminal domain AVS54_RS18345 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVS54_RS18345 PF00289 Biotin carboxylase, N-terminal domain AVS54_RS18345 PF00364 Biotin-requiring enzyme AVS54_RS18355 PF00202 Aminotransferase class-III AVS54_RS18360 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS18365 PF14031 Putative serine dehydratase domain AVS54_RS18365 PF01168 Alanine racemase, N-terminal domain AVS54_RS18370 PF16868 NMT1-like family AVS54_RS18380 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS18380 PF00593 TonB dependent receptor AVS54_RS18385 PF04361 Protein of unknown function (DUF494) AVS54_RS18400 PF01751 Toprim domain AVS54_RS18400 PF01131 DNA topoisomerase AVS54_RS18410 PF00005 ABC transporter AVS54_RS18415 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS18425 PF00171 Aldehyde dehydrogenase family AVS54_RS18435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVS54_RS18435 PF00205 Thiamine pyrophosphate enzyme, central domain AVS54_RS18435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVS54_RS18440 PF01037 Lrp/AsnC ligand binding domain AVS54_RS18445 PF01062 Bestrophin, RFP-TM, chloride channel AVS54_RS18455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AVS54_RS18470 PF02574 Homocysteine S-methyltransferase AVS54_RS18470 PF00809 Pterin binding enzyme AVS54_RS18470 PF02965 Vitamin B12 dependent methionine synthase, activation domain AVS54_RS18470 PF02607 B12 binding domain AVS54_RS18470 PF02310 B12 binding domain AVS54_RS18475 PF00593 TonB dependent receptor AVS54_RS18475 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS18480 PF01497 Periplasmic binding protein AVS54_RS18485 PF05690 Thiazole biosynthesis protein ThiG AVS54_RS18490 PF08543 Phosphomethylpyrimidine kinase AVS54_RS18505 PF02321 Outer membrane efflux protein AVS54_RS18510 PF01467 Cytidylyltransferase-like AVS54_RS18520 PF01594 AI-2E family transporter AVS54_RS18530 PF07885 Ion channel AVS54_RS18530 PF02254 TrkA-N domain AVS54_RS18540 PF00164 Ribosomal protein S12/S23 AVS54_RS18545 PF00177 Ribosomal protein S7p/S5e AVS54_RS18550 PF00679 Elongation factor G C-terminus AVS54_RS18550 PF03144 Elongation factor Tu domain 2 AVS54_RS18550 PF14492 Elongation Factor G, domain II AVS54_RS18550 PF03764 Elongation factor G, domain IV AVS54_RS18550 PF00009 Elongation factor Tu GTP binding domain AVS54_RS18555 PF00009 Elongation factor Tu GTP binding domain AVS54_RS18555 PF03143 Elongation factor Tu C-terminal domain AVS54_RS18555 PF03144 Elongation factor Tu domain 2 AVS54_RS18560 PF00338 Ribosomal protein S10p/S20e AVS54_RS18565 PF00297 Ribosomal protein L3 AVS54_RS18570 PF00573 Ribosomal protein L4/L1 family AVS54_RS18575 PF00276 Ribosomal protein L23 AVS54_RS18580 PF00181 Ribosomal Proteins L2, RNA binding domain AVS54_RS18580 PF03947 Ribosomal Proteins L2, C-terminal domain AVS54_RS18585 PF00203 Ribosomal protein S19 AVS54_RS18590 PF00237 Ribosomal protein L22p/L17e AVS54_RS18595 PF00189 Ribosomal protein S3, C-terminal domain AVS54_RS18595 PF07650 KH domain AVS54_RS18600 PF00252 Ribosomal protein L16p/L10e AVS54_RS18605 PF00831 Ribosomal L29 protein AVS54_RS18610 PF00366 Ribosomal protein S17 AVS54_RS18620 PF00171 Aldehyde dehydrogenase family AVS54_RS18630 PF00238 Ribosomal protein L14p/L23e AVS54_RS18635 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AVS54_RS18640 PF00281 Ribosomal protein L5 AVS54_RS18640 PF00673 ribosomal L5P family C-terminus AVS54_RS18645 PF00253 Ribosomal protein S14p/S29e AVS54_RS18650 PF00410 Ribosomal protein S8 AVS54_RS18655 PF00347 Ribosomal protein L6 AVS54_RS18660 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AVS54_RS18665 PF00333 Ribosomal protein S5, N-terminal domain AVS54_RS18665 PF03719 Ribosomal protein S5, C-terminal domain AVS54_RS18670 PF00327 Ribosomal protein L30p/L7e AVS54_RS18675 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AVS54_RS18680 PF00344 SecY translocase AVS54_RS18685 PF01176 Translation initiation factor 1A / IF-1 AVS54_RS18690 PF00444 Ribosomal protein L36 AVS54_RS18695 PF00416 Ribosomal protein S13/S18 AVS54_RS18700 PF00411 Ribosomal protein S11 AVS54_RS18705 PF01479 S4 domain AVS54_RS18705 PF00163 Ribosomal protein S4/S9 N-terminal domain AVS54_RS18710 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AVS54_RS18710 PF01000 RNA polymerase Rpb3/RpoA insert domain AVS54_RS18710 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AVS54_RS18715 PF01196 Ribosomal protein L17 AVS54_RS18720 PF01230 HIT domain AVS54_RS18725 PF03091 CutA1 divalent ion tolerance protein AVS54_RS18730 PF11412 Disulphide bond corrector protein DsbC AVS54_RS18730 PF02683 Cytochrome C biogenesis protein transmembrane region AVS54_RS18735 PF00892 EamA-like transporter family AVS54_RS18740 PF00490 Delta-aminolevulinic acid dehydratase AVS54_RS18745 PF01926 50S ribosome-binding GTPase AVS54_RS18750 PF00034 Cytochrome c AVS54_RS18755 PF05140 ResB-like family AVS54_RS18760 PF01578 Cytochrome C assembly protein AVS54_RS18765 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AVS54_RS18765 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AVS54_RS18770 PF13627 Prokaryotic lipoprotein-attachment site AVS54_RS18775 PF01491 Frataxin-like domain AVS54_RS18780 PF17092 Penicillin-binding protein OB-like domain AVS54_RS18780 PF00912 Transglycosylase AVS54_RS18780 PF00905 Penicillin binding protein transpeptidase domain AVS54_RS18785 PF01202 Shikimate kinase AVS54_RS18790 PF01761 3-dehydroquinate synthase AVS54_RS18795 PF01966 HD domain AVS54_RS18795 PF13286 Phosphohydrolase-associated domain AVS54_RS18800 PF00043 Glutathione S-transferase, C-terminal domain AVS54_RS18800 PF13417 Glutathione S-transferase, N-terminal domain AVS54_RS18805 PF17755 UvrA DNA-binding domain AVS54_RS18805 PF17760 UvrA interaction domain AVS54_RS18810 PF07690 Major Facilitator Superfamily AVS54_RS18815 PF00436 Single-strand binding protein family AVS54_RS18820 PF00593 TonB dependent receptor AVS54_RS18820 PF07715 TonB-dependent Receptor Plug Domain AVS54_RS18830 PF03328 HpcH/HpaI aldolase/citrate lyase family AVS54_RS18840 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS18850 PF03466 LysR substrate binding domain AVS54_RS18850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS18855 PF01979 Amidohydrolase family AVS54_RS18860 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS18865 PF13439 Glycosyltransferase Family 4 AVS54_RS18865 PF00534 Glycosyl transferases group 1 AVS54_RS18875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS18875 PF03466 LysR substrate binding domain AVS54_RS18885 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS18890 PF00005 ABC transporter AVS54_RS18910 PF01274 Malate synthase AVS54_RS18915 PF07729 FCD domain AVS54_RS18915 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS18930 PF01040 UbiA prenyltransferase family AVS54_RS18935 PF00155 Aminotransferase class I and II AVS54_RS18940 PF13185 GAF domain AVS54_RS18945 PF00701 Dihydrodipicolinate synthetase family AVS54_RS18960 PF04972 BON domain AVS54_RS18960 PF01476 LysM domain AVS54_RS18965 PF05690 Thiazole biosynthesis protein ThiG AVS54_RS18965 PF02597 ThiS family AVS54_RS18970 PF00561 alpha/beta hydrolase fold AVS54_RS18975 PF02390 Putative methyltransferase AVS54_RS18990 PF00682 HMGL-like AVS54_RS18995 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS19015 PF07702 UTRA domain AVS54_RS19015 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS19020 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS19030 PF07702 UTRA domain AVS54_RS19030 PF00392 Bacterial regulatory proteins, gntR family AVS54_RS19035 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS19045 PF00005 ABC transporter AVS54_RS19050 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS19055 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS19060 PF00550 Phosphopantetheine attachment site AVS54_RS19060 PF14765 Polyketide synthase dehydratase AVS54_RS19060 PF08659 KR domain AVS54_RS19060 PF16197 Ketoacyl-synthetase C-terminal extension AVS54_RS19060 PF00109 Beta-ketoacyl synthase, N-terminal domain AVS54_RS19060 PF08990 Erythronolide synthase docking AVS54_RS19060 PF08240 Alcohol dehydrogenase GroES-like domain AVS54_RS19060 PF00698 Acyl transferase domain AVS54_RS19060 PF02801 Beta-ketoacyl synthase, C-terminal domain AVS54_RS19065 PF02515 CoA-transferase family III AVS54_RS19070 PF00440 Bacterial regulatory proteins, tetR family AVS54_RS19075 PF09297 NADH pyrophosphatase zinc ribbon domain AVS54_RS19075 PF00293 NUDIX domain AVS54_RS19080 PF00175 Oxidoreductase NAD-binding domain AVS54_RS19080 PF00111 2Fe-2S iron-sulfur cluster binding domain AVS54_RS19080 PF00970 Oxidoreductase FAD-binding domain AVS54_RS19085 PF01425 Amidase AVS54_RS19095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVS54_RS19095 PF03466 LysR substrate binding domain AVS54_RS19100 PF13458 Periplasmic binding protein AVS54_RS19110 PF00005 ABC transporter AVS54_RS19120 PF02653 Branched-chain amino acid transport system / permease component AVS54_RS19130 PF00355 Rieske [2Fe-2S] domain AVS54_RS19145 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AVS54_RS19145 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AVS54_RS19160 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AVS54_RS19160 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AVS54_RS19160 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AVS54_RS19165 PF07690 Major Facilitator Superfamily AVS54_RS19170 PF00132 Bacterial transferase hexapeptide (six repeats) AVS54_RS19170 PF12804 MobA-like NTP transferase domain AVS54_RS19170 PF14602 Hexapeptide repeat of succinyl-transferase AVS54_RS19190 PF02630 SCO1/SenC AVS54_RS19195 PF01040 UbiA prenyltransferase family AVS54_RS19200 PF02628 Cytochrome oxidase assembly protein AVS54_RS19220 PF00510 Cytochrome c oxidase subunit III AVS54_RS19235 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVS54_RS19240 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AVS54_RS19240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AVS54_RS19250 PF00999 Sodium/hydrogen exchanger family AVS54_RS19255 PF00149 Calcineurin-like phosphoesterase AVS54_RS19260 PF04542 Sigma-70 region 2 AVS54_RS19260 PF04545 Sigma-70, region 4 AVS54_RS19260 PF00140 Sigma-70 factor, region 1.2 AVS54_RS19270 PF00756 Putative esterase AVS54_RS19275 PF00107 Zinc-binding dehydrogenase AVS54_RS19275 PF08240 Alcohol dehydrogenase GroES-like domain AVS54_RS19285 PF04898 Glutamate synthase central domain AVS54_RS19285 PF01493 GXGXG motif AVS54_RS19285 PF01645 Conserved region in glutamate synthase AVS54_RS19285 PF00310 Glutamine amidotransferases class-II AVS54_RS19290 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVS54_RS19290 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AVS54_RS19295 PF03922 OmpW family AVS54_RS19300 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS19305 PF00005 ABC transporter AVS54_RS19310 PF02405 Permease MlaE AVS54_RS19315 PF02470 MlaD protein AVS54_RS19320 PF04333 MlaA lipoprotein AVS54_RS19330 PF00005 ABC transporter AVS54_RS19335 PF01061 ABC-2 type transporter AVS54_RS19345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVS54_RS19350 PF01634 ATP phosphoribosyltransferase AVS54_RS19355 PF00815 Histidinol dehydrogenase AVS54_RS19360 PF00155 Aminotransferase class I and II AVS54_RS19365 PF00475 Imidazoleglycerol-phosphate dehydratase AVS54_RS19370 PF00117 Glutamine amidotransferase class-I AVS54_RS19375 PF00977 Histidine biosynthesis protein AVS54_RS19380 PF00977 Histidine biosynthesis protein AVS54_RS19385 PF01502 Phosphoribosyl-AMP cyclohydrolase AVS54_RS19390 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AVS54_RS19395 PF01230 HIT domain AVS54_RS19400 PF02416 mttA/Hcf106 family AVS54_RS19405 PF02416 mttA/Hcf106 family AVS54_RS19410 PF00902 Sec-independent protein translocase protein (TatC) AVS54_RS19420 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS19425 PF02917 Pertussis toxin, subunit 1 AVS54_RS19430 PF03440 Aerolysin/Pertussis toxin (APT) domain AVS54_RS19430 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain AVS54_RS19435 PF09275 Pertussis toxin S4 subunit AVS54_RS19440 PF09276 Pertussis toxin S5 subunit AVS54_RS19445 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain AVS54_RS19445 PF03440 Aerolysin/Pertussis toxin (APT) domain AVS54_RS19450 PF04956 TrbC/VIRB2 family AVS54_RS19455 PF05101 Type IV secretory pathway, VirB3-like protein AVS54_RS19460 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AVS54_RS19465 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AVS54_RS19475 PF04335 VirB8 protein AVS54_RS19480 PF03524 Conjugal transfer protein AVS54_RS19485 PF03743 Bacterial conjugation TrbI-like protein AVS54_RS19490 PF00437 Type II/IV secretion system protein AVS54_RS19500 PF00892 EamA-like transporter family AVS54_RS19520 PF10396 GTP-binding protein TrmE N-terminus AVS54_RS19520 PF01926 50S ribosome-binding GTPase AVS54_RS19520 PF12631 MnmE helical domain AVS54_RS19525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS19530 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS19535 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS19535 PF12911 N-terminal TM domain of oligopeptide transport permease C AVS54_RS19540 PF00005 ABC transporter AVS54_RS19540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS19550 PF01960 ArgJ family AVS54_RS19560 PF00293 NUDIX domain AVS54_RS19575 PF02321 Outer membrane efflux protein AVS54_RS19580 PF00873 AcrB/AcrD/AcrF family AVS54_RS19585 PF00873 AcrB/AcrD/AcrF family AVS54_RS19590 PF13533 Biotin-lipoyl like AVS54_RS19595 PF07072 Cell division protein AVS54_RS19600 PF01121 Dephospho-CoA kinase AVS54_RS19605 PF06750 Bacterial Peptidase A24 N-terminal domain AVS54_RS19605 PF01478 Type IV leader peptidase family AVS54_RS19620 PF02569 Pantoate-beta-alanine ligase AVS54_RS19625 PF02616 Segregation and condensation protein ScpA AVS54_RS19635 PF07690 Major Facilitator Superfamily AVS54_RS19640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AVS54_RS19640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AVS54_RS19650 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS19655 PF00005 ABC transporter AVS54_RS19660 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS19665 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS19670 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVS54_RS19675 PF00005 ABC transporter AVS54_RS19680 PF18075 FtsX extracellular domain AVS54_RS19685 PF03975 CheD chemotactic sensory transduction AVS54_RS19695 PF14815 NUDIX domain AVS54_RS19695 PF00730 HhH-GPD superfamily base excision DNA repair protein AVS54_RS19695 PF00633 Helix-hairpin-helix motif AVS54_RS19695 PF10576 Iron-sulfur binding domain of endonuclease III AVS54_RS19705 PF08241 Methyltransferase domain AVS54_RS19715 PF02515 CoA-transferase family III AVS54_RS19720 PF02515 CoA-transferase family III AVS54_RS19730 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS19735 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS19740 PF00881 Nitroreductase family AVS54_RS19750 PF00682 HMGL-like AVS54_RS19755 PF00378 Enoyl-CoA hydratase/isomerase AVS54_RS19760 PF02515 CoA-transferase family III AVS54_RS19765 PF03401 Tripartite tricarboxylate transporter family receptor AVS54_RS19775 PF00199 Catalase AVS54_RS19775 PF06628 Catalase-related immune-responsive AVS54_RS19780 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS19785 PF00005 ABC transporter AVS54_RS19795 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AVS54_RS19800 PF01546 Peptidase family M20/M25/M40 AVS54_RS19800 PF07687 Peptidase dimerisation domain AVS54_RS19810 PF00005 ABC transporter AVS54_RS19810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS19815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVS54_RS19815 PF00005 ABC transporter AVS54_RS19820 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS19820 PF12911 N-terminal TM domain of oligopeptide transport permease C AVS54_RS19825 PF00528 Binding-protein-dependent transport system inner membrane component AVS54_RS19830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVS54_RS19835 PF01926 50S ribosome-binding GTPase AVS54_RS19835 PF12631 MnmE helical domain AVS54_RS19835 PF10396 GTP-binding protein TrmE N-terminus AVS54_RS19845 PF00486 Transcriptional regulatory protein, C terminal AVS54_RS19845 PF00072 Response regulator receiver domain AVS54_RS19850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVS54_RS19850 PF00512 His Kinase A (phospho-acceptor) domain AVS54_RS19865 PF01970 Tripartite tricarboxylate transporter TctA family AVS54_RS19870 PF00155 Aminotransferase class I and II AVS54_RS19875 PF00313 'Cold-shock' DNA-binding domain