CXD92_RS00015    3394 ..    3417 +  -6.8  -2.96979   AGAACGCGTCAAAGA          GCTGG-ATTGA ACC TCGATGCCAGC          TGTGCTTGCTGTTCC  51 16
CXD92_RS00020 NONE
CXD92_RS00025    5210 ..    5241 +  -3.6  -3.14344   ACGCGGCCAGCGGCG      CTTACCG-CGCCG GCTCGTA CGGCGTCGGGCAG      TTGCTGGCGGCCGTG  45 103
CXD92_RS00035    6413 ..    6434 +  -7.3  -4.09685   CTCAGCAAGACGAAA           TCCAGGTGCG GTT CG-GCCTGGA           TTTTGCAACGTAAGG  67 116
CXD92_RS00040 NONE
CXD92_RS00045    6668 ..    6680 +  -2.7  -3.65046   GTCATGGGCACCATC                GAATT CTA AGTTC                TTCTTCAAGTCAGAA  53 28
         tuf    7926 ..    7960 + -18.1  -3.72893   AAGGCGCGGTTTTCC    CATGGATAGAGGGGCC GGAT GGCC-CTCTATCCATG     TTTGCTGGAAAAGTA  93 39
CXD92_RS00055 NONE
        secE NONE
        nusG    9056 ..    9074 +  -4.5  -4.07568   CGAACTCGATTTCAG             CCAGGTC GAAAA GACCTGA             TTTTCAAACCCCGGG  62 7
        rplK NONE
CXD92_RS00075   10300 ..   10321 + -14.5  -2.62184   ATAGAACTTTGGGCC           GCATCCGGA CTTG TCCGGATGC            TGCTGTCAAAGACCG  71 55
CXD92_RS00080   11043 ..   11056 +  -2.3  -3.05384   GGCGGCCTGATCAGG               CTCCG CGTC CGGAA                TTCGCTGAACGACAA  41 31
CXD92_RS00085   11517 ..   11549 + -17.7  -4.35524   AGACCTCGCGTCGAC      GCCCGGGGACAGC GCTCTTA GCCGTCCCCGGGC      TTTTGCGTTTCCAGG 100 40
        rpoB NONE
        rpoC   20076 ..   20099 + -16.8   -4.4078   CGACAGCCAAAAAAA          GGCCGCTGAT GCAT ATCAGCGGCC           TTTTGCTTGACGCGG 100 83
CXD92_RS00105   22150 ..   22174 +  -3.4  -3.02144   AGCCCCAGGCCAGCG          CCGCCTACTT CGTTC GAGCCGGCGG          TGTTGACGCGCGTAA  42 228
CXD92_RS00125   27452 ..   27486 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS00160 NONE
CXD92_RS00165   34454 ..   34511 + -16.7  -3.53224   ACCTGATGGCGCTGT GCGAACCCGCGCCATGACGCCGGGCCGG CGC CCGGCACGGCCCCGCGGCCCGGGC-CGC TTTGCGGGCCGACTA  86 9
CXD92_RS00170 NONE
        glyQ NONE
CXD92_RS00185 NONE
CXD92_RS00190   40595 ..   40613 +  -2.2  -2.53015   CAACTGCTGCAGGAG             GCCTGATC CAT GGCCTGGC             TGCGTTCGGCGCTGT  37 20
CXD92_RS00195 NONE
CXD92_RS00200   42211 ..   42236 +  -5.9  -3.74693   CCCTGCCGCAGTTCT         GAGCCCGCGCC GGCT GGCGCGGCCGA          TTTGCTACGATGACG  59 24
        gloA NONE
CXD92_RS00210   43600 ..   43610 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  57 407
CXD92_RS00220   45098 ..   45110 +  -6.2  -2.71144   GGCCACGCCCGGGGC                CGCC GGCCA GGCG                TAATTGGCCAGGCTG  47 509
CXD92_RS00230   46039 ..   46051 +  -6.2  -3.96531   AGTCTCGATTCGTGG                CGGC ATCAA GCCG                TTTATCCATATCTGA  64 315
CXD92_RS00240   47473 ..   47511 + -10.9  -3.14132   GGGCCAGGTTGATCT  CCAGCGGCGCGGCGGC GCGGGAAG GCCGCCGCGAC-CGGG   TTGGTGCCCAGCAGC  64 520
CXD92_RS00250 NONE
        metW   50078 ..   50088 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 97
CXD92_RS00265   51098 ..   51113 +  -3.2  -2.70932   TCACAGCTAGCAGGA              CCGG CGCGCCTA CCGG               TCGTTCCACGGGAGA  40 31
CXD92_RS00270   52437 ..   52452 +  -7.5  -3.14527   CGCTACCCGCGCAAG              CCGCC CGCAGT GGCGG               TATTGATAACAATTC  54 71
CXD92_RS00375   70070 ..   70080 +  -4.6  -3.07013   CAAGCATGGACGCAT                 GTCG CAA CGGC                 TGTATTGACCCAGTG  45 59
CXD92_RS00380   70668 ..   70678 +  -4.6  -3.10464   ATTCAACAAGAACAC                 CGTG CAG CGCG                 TGTTCCAGTTGATGG  47 249
        htpG   73562 ..   73594 +  -6.8  -4.08767   ATGCGCTCGATCAAG      GGGTGGCTGTCCCC GCGCG GGGGGCTGACACCG      TTTTGGCAGGCTGGC  67 43
CXD92_RS00420   77804 ..   77838 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS00430   79792 ..   79808 +  -2.1  -4.07568   AGTCTTCCCCGATCA              GCAGTTC TTC GTACAGC              TTTTCCCCGGGCCGC  58 213
        waaC   92972 ..   92998 +  -7.8  -2.89683   GGTCGAGCAGGCCCT         GGCGGCGGCCTG ACA TGGGCCGCGGCG         TCTATACCCTGGCGT  52 13
CXD92_RS00495   94274 ..   94284 +  -8.2  -3.14132   ATTGGCTGGGATAGC                 CCGC CGT GCGG                 TTCGTCAGGGCCGCA  56 27
CXD92_RS00515 NONE
CXD92_RS00520   98558 ..   98572 +  -4.2  -5.01732   CATGCCGGCCACCAT               CCCG CTGCGGC CGGG               TTTTTTCCAGCGCTT  81 404
CXD92_RS00530 NONE
CXD92_RS00535  100410 ..  100423 +  -2.4  -3.51934   TGACCCGGCCCGCGT               TGCA TCACGT TGCA                TGTTTGTAAGCGCAA  48 38
CXD92_RS00540 NONE
CXD92_RS00545  102743 ..  102768 + -13.2  -3.61178   CTGTAGCGGCCGGCA         GGCGGGCGGC CCTGGC GCCGCCCGCG          TTTCGCGTCCCTCGC  77 35
CXD92_RS00550 NONE
        lipB  103778 ..  103800 + -12.7  -3.31792   CTTTTTTGTCTCGAA           CCGGAGCGC GCCTG GCGTTCCGG           TTGTGAAGGTGCTCA  71 49
        lipA  104853 ..  104873 + -12.5  -2.60496   ATAGGTATCGGCCCG            CGCCAGCGC CAC GCCCTGGCG            GTCTTTCACCGACAG  64 61
        metC  110499 ..  110518 + -10.7  -3.89346   CCCATCAACGACAAA            GCCTCCG CATGGA CGGAGGC             TTTGTGGCGTCGGGG  77 53
CXD92_RS00610 NONE
CXD92_RS00615  114737 ..  114765 +    -6  -3.78419   GTCCGCAGGGGGACT        GGCACCGG CCAAATCCGACCT CCGGTGCC        TTGTATCTTTCCTCC  62 100
CXD92_RS00620  116017 ..  116032 +  -5.4  -2.72991   CCATGCTCCATCCGG              GGACAGG CAC CC-GTCC              TCCTTCAGCGTATCC  45 81
CXD92_RS00685  128728 ..  128770 +  -5.5   -3.1247   ACGGATCGCCGTCGA TACGGTGGCGGACCAGCTGC CAGG GCTGCTGCTGCGCCAG-GTA TTCGCTGTCGAAGAT  47 466
        rpoN  132587 ..  132602 +  -6.2  -4.30833   CCACGCCGCGGGTCG              TTAGGA CGCC TCCTAA               TTTGTTCCTGATTTC  73 22
CXD92_RS00705  132999 ..  133030 + -16.6  -3.96148   GAGCGACGCGGCGCC      TTGCGCCAGCCGGC TCAT GCTGCCTGGCGCAA       TTTATCGTCCCCACA  93 39
CXD92_RS00740  142789 ..  142802 +  -5.2  -3.77188   CGGGACGGATCCAGG               GCGC CGCATT GCGC                TATTTATGTTTCAAT  60 70
CXD92_RS00745  143562 ..  143582 +  -8.9  -3.96148   GAGCCGGGCGACGAC            CGCCTGCGC GTC GCGTAGGCC            TTTCTCCTCACGACA  70 8
CXD92_RS00775  150295 ..  150328 +  -7.4   -3.1505   CGGCCACGCCGGCCA     GCGCGCCGACCTGGT AGACC ACCAGGTCGTAG-GC     TTCCTGCGGGGTGAT  54 510
CXD92_RS00800  154064 ..  154085 +  -6.5  -4.28361   GAAGCGCACCAGTTT           C-TCGGCCAC TTC GCGGCCGATG           TTTTCCTGGGATTCC  72 374
        ubiE  160821 ..  160836 + -11.8  -3.53811   AAGGTTTGCCGCGCA              GGCCCC AACC GGGGCC               TTTCCAGCCGCTCCC  72 121
CXD92_RS00840  161991 ..  162018 + -19.2  -3.30007   CGGCCGGGCTGCACC        GTGAACCGGCCC GCCA GGGCCGGTTCGC         TTATGGGCCGGTCTT 100 103
CXD92_RS00845 NONE
        ubiB  164641 ..  164673 +  -4.8  -3.13403   TCAAGATGAACGCGA     TCACCGAGTGGGCGGC CTT GCCGGCCAC-CGA-GA     TGTTCCTGCGCGACA  47 330
CXD92_RS00880 NONE
CXD92_RS00885 NONE
CXD92_RS00890 NONE
CXD92_RS00895  173561 ..  173582 + -17.3   -4.7373   CAGCCGCAATGCAAA           GGGCGCACC GCAT GGTGCGCCC            TTTTTCATGCCATGG 100 48
CXD92_RS00905 NONE
CXD92_RS00910  175447 ..  175464 +  -6.3  -3.05844   ACAGGTCGTCGGCGA             TCAG-CGC CTC GCGGCTGA             TCTTGCGCTCGGGCG  49 219
CXD92_RS00920  176975 ..  176985 +  -6.8  -2.62735   TGGGCCGCCGGTTCC                 CAGG AGT CCTG                 TCATGTCCGCAATCT  47 104
CXD92_RS00925  177787 ..  177819 +  -2.6  -3.92324   TGGCGGCGCCGCGTC     CAGCCCC-C-GCGCCG TAG CGCCTTGGCGGGGCTG     TTTACTATTACGCCC  56 9
CXD92_RS00930  178708 ..  178752 +  -8.3  -3.92324   GGGTTCGGCCTTCTC GTCGGCGTGGCTGGCGGCCAG CAC CATGCCCTCGGACACGCCGAA TTTCATCTTGCGCGG  70 135
        apbC  182419 ..  182436 +  -3.3  -3.14125   TGGTGGTCCGGCCCG             CCTGACG CATG CGTCGGA              TATTGCGTGTCTGCC  44 21
CXD92_RS00950 NONE
CXD92_RS00955  188026 ..  188038 +  -7.7  -3.37344   GCGGCGGCCGGCGGC                GGGTA GAA TACCC                TTCATTCAATCGAGG  59 49
CXD92_RS00960  188817 ..  188838 +  -6.5  -3.25823   GCTTTGCGTCTCCAC           GCCG-CCGAC CTC GTCGGGCTGC           TTCATGTAGCGGGAA  52 216
CXD92_RS00980  190653 ..  190681 +    -8  -5.24129   GTCCTACAATTCCCC        GAGGTCGGCCCG CTCGT CGGGCCGGTTGC        TTTTTTGTCACCAGC  95 76
CXD92_RS00985  193036 ..  193075 + -33.6  -3.65812   GCAGTAAATCCGACG  CGCCGCGCCGCGCCGCCC GAGG GGGCGGCCCGGCGCGGCG   TTGTCTTCGAGGGAG 100 34
CXD92_RS00990  194343 ..  194353 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS01000  195336 ..  195375 +  -9.4   -3.5361   CCTGGACGAATACAA  CCTATTGACAGTTCACAG CTAG CTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD92_RS01005  196419 ..  196444 +  -4.7  -3.72481   TAGCCTGGCGGGCAC        GGCGCATGCGG GCAGGG CCGC--GCGCC         TATTGTTTTGGTAAA  55 38
CXD92_RS01010 NONE
CXD92_RS01015  198058 ..  198073 +    -6  -3.55444   AACAGGGGCGGATCG              GCGCCC ATCC GGACGC               TTTGCGGCATGGCGC  56 49
        gcvT  199551 ..  199574 +  -7.4  -3.97368   GGCTTCCGCGCGGCC          GTTGGC-CGCC GGA GGCGCGCAAAC          TTTCTCCATTCCCAC  68 47
        gcvH  200008 ..  200028 +  -8.1  -3.90744   CAACGGGCCGGCCCG            CGGGCCGGC CCC GCCTCCCCG            TTATTTCGAGAAAAC  68 48
        gcvP  202928 ..  202973 +    -9  -3.75665   GTGCGCGCTCATGGC GCATGACGAGGTGCCTGTCCCC CCAT GGGGACTGGCACCT-G-CAAGA TTTCATGGCGTCTGC  68 44
CXD92_RS01040 NONE
CXD92_RS01045  206458 ..  206494 +  -6.6  -4.26019   CTTCGGCCTGTGCCT   GTGCGCCGACCTGGTG CTGGCCA CGCCAG--CGGCGCGC   TTTTGCCTGTCGTTC  70 411
CXD92_RS01055  207665 ..  207700 +  -3.2  -3.56568   GTGGCCACTTGTGCC    GCAATGCGC-CAGCAGG GAA CTTGCTACGCGCATCGG    TTTGGCAGATCATTG  49 54
CXD92_RS01060  208572 ..  208583 +  -7.2  -3.60098   GGGCTTGCCGTTCAT                GCCG ACCA CGGC                 TTTGGCGTAGCCGGT  60 481
CXD92_RS01095  213384 ..  213398 +  -4.2  -3.72893   CAGGGTGCGCGTCAG               GCCG ATCAGCC CGGC               TTTGGTCGCCGAATA  55 352
        queC  223939 ..  223952 +  -4.5  -2.82623   GCATCAGGACGGTGT               CGCGCC ATT GGC-CG               TGCTTGTAGCCCACC  44 126
CXD92_RS01135  225470 ..  225504 +  -8.4  -2.84298   CCTCCAGGCATCGCC     GCGCGACTGAGCCTGG CGC CCGGCCTGCGTTGCGC     TAGTTGTGAACTGTC  54 16
CXD92_RS01155 NONE
CXD92_RS01160  229901 ..  229922 + -18.7  -3.41051   ACGACTTTGCTGTGC           CGGGCGCCC CTTG GGGCGCCCG            TTGTCCTACCCGTAG  93 80
CXD92_RS01165  231487 ..  231509 +    -4  -4.18018   CCACCGCCTTTTCCT           GCATGCCCTG CTG CAGCGCGTCC           TTTTCGCTGACGCCC  63 123
CXD92_RS01175  234268 ..  234287 +  -5.6   -4.7497   GGCCGGCGCAACCGG            GACAGCCT TGCG GGGCTGCC             TTTTTCATGGATGGG  81 64
CXD92_RS01180  235372 ..  235382 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 76
CXD92_RS01185  236362 ..  236407 + -13.5  -3.14132   CAACCTGGACGAATA CAACCTATTGACAGTTCACAG CTAG CTGTGATGTCTCAATAGGTTG TTCATCCAGGCCGGA  72 1
CXD92_RS01190  237589 ..  237623 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS01210  240916 ..  240954 +  -7.3  -3.14229   AGGCGGCGCTCGAAG  GCGCCGACGGCGCCC-TGC AGG GCATGGGCCCGGGCG-CGC  TGTTCATCAACATGT  52 315
CXD92_RS01230  246093 ..  246111 + -11.6  -3.04144   ATCATCCATCCCACG             GCGCCGGC GGC GCCGGCCC             TGTTCGCGCTGGCCG  65 367
CXD92_RS01240  248114 ..  248161 + -10.4  -3.01712   AAGGCAATCTGCAGC CCTGACCAGGGGAGCCGCTGCCC TCA GCGCAGCGGCTCGA-TGGCCTGG TCTTCCAGCGCGGCC  60 21
CXD92_RS01265  252751 ..  252780 + -23.7  -3.18264   TCATGGCGTATGACA       GGGTGCCTGTCCC CGCG GGGACAGGCACCC        TTGCTCAGTCGGGCA 100 97
CXD92_RS01280  256384 ..  256413 + -23.7  -2.62616   CGACACCCGCGGCAA       GGGTGCCTGTCCC AGCC GGGACAGGCACCC        TGCTGTACGCCATCG 100 72
        fumC  259879 ..  259891 +  -4.7  -2.52464   GCGCGCCGCTAGAGC                GGCGC CGG GCGCG                TCAGTTGGGCGCGCC  42 29
CXD92_RS01305  262020 ..  262035 + -11.8   -5.4505   CCGTGCACGCCGAAA              GCGCCC CGCG GGGCGC               TTTTTTCTTGCGCGC 100 54
         ggt  265205 ..  265224 +  -5.6  -4.36914   CGCCAGGAAGATCGG            CCCGGCGCC GGT GG-GCAGGG            TTTTATACGGCGCGA  69 414
CXD92_RS01335  269039 ..  269056 + -14.1  -3.84451   GTCGAACCAGGAAAA             CGCCGCC GTCA GGCGGCG              TTTGCGTTTGCGCAA  83 441
CXD92_RS01345 NONE
CXD92_RS01350 NONE
        cydB NONE
        cydX NONE
        cydD NONE
        cydC  276149 ..  276186 +  -2.7  -2.71041   AGGCCGGCTGCACCG   CGCCGCGCCCATGT GACTGGCCTAA GCATCGGCGC-GCG   GTTATAGTTCGCCTT  40 10
CXD92_RS01375  276907 ..  276933 +  -8.7  -2.84812   CCCAATCGGGCAGCA        CGCG-CACCAGG CCTG CCTGATGGCGCG         TGTCATGCTGTCGCT  54 157
CXD92_RS01385  278338 ..  278379 +  -7.9  -4.18488   CGGCCGGACACTGTG GGCAGTGCTTCGCGCGCAGC ATG GCTGCGCCAGGCGCA-TGTC TTTCTTGCCATCCGT  74 167
CXD92_RS01405 NONE
CXD92_RS01410  281270 ..  281282 +  -3.3  -3.34517   TGCATTGTAGTGAAA                CTTCG CGC CGCAG                TCTTTCGGACAGGCT  46 518
        mscL  286539 ..  286551 +  -6.2  -3.63569   CAGGCCCAGCACGCG                CGCC AGCTG GGCG                TTGTTGCCCCATTGC  57 479
CXD92_RS01455  288242 ..  288276 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS01485  294613 ..  294639 + -12.3  -2.58544   CAGCACCGCCAGCTC        GGCCGCGGCCAC GGCG GTG-CCGCGGTC         ATTGTGCGGGTGCAC  62 285
CXD92_RS01495  296256 ..  296299 +  -8.1  -3.33814   CGGCGCGGCGCGAGC CGCCGG-CCTGAGGCGCCGGCG GGG CGTCG-TGCC-CGGATCCGGCG TATTATCTAGCGTTT  56 15
CXD92_RS01500  298354 ..  298380 + -11.5  -2.74488   TGTCCTGATTCACAG        GCCCGCG-CGGC CAGC GCCGGCGCGCGC         TGATTCGCGTCGTTG  62 176
CXD92_RS01510  300895 ..  300914 +  -7.8  -3.35679   TGATGCCCAGCTCCA            GCCCGATC AGGT GATAGGGC             TTGTACATGGCCGAA  59 391
CXD92_RS01535  305439 ..  305470 + -10.1  -3.05384   TCCACCTTGAGCAGC      GGCAGCCGGCCCAC GTCCA GCGGGTC-GCTGCC      TTCGGTGCGCAGCAG  59 344
CXD92_RS01555 NONE
CXD92_RS01560 NONE
CXD92_RS01565 NONE
CXD92_RS01570 NONE
CXD92_RS01575  312447 ..  312474 +  -9.1  -4.07568   TCCCGAAGTCTTCCT        TC-CTGCGCCGG CCTGT CCGGCGCAGCGC        TTTTGGGGACGGCAC  75 56
CXD92_RS01590 NONE
CXD92_RS01595 NONE
CXD92_RS01600 NONE
CXD92_RS01605 NONE
CXD92_RS01610  320678 ..  320696 +  -3.1   -3.4247   ATCTTGGCGTGCGTC            TG-GCGGG CGCG CTCGCTCA             TGTTGTTGACGTTCT  47 336
CXD92_RS01635 NONE
CXD92_RS01640 NONE
        ruvX NONE
CXD92_RS01650 NONE
CXD92_RS01655  328670 ..  328684 +  -2.7  -2.82516   CAGCCGCAGCGTGCA               CACGC CGTTC GCGGG               TATGATGCTGCCCGG  41 64
CXD92_RS01660  329490 ..  329526 + -16.4  -3.06831   TCGCCGGCGAGCTGT    AGCCGGCCCGGGCGGC GCGTG GCCGCCCGCGGCGGCG    TTCAGTCGCCGTTGG  79 24
CXD92_RS01680  333817 ..  333841 +   -15  -3.16492   TCATCCTCCGGTTGC         CGCCGCGCGGG CCGT CCCGC-CGGCG          TGTTGCTGGCTATCC  76 408
CXD92_RS01725 NONE
CXD92_RS01730 NONE
CXD92_RS01735  342959 ..  342981 +    -9  -2.71681   CGCGCAGCAGCCGGT           CGCCGGCGGC ATG GCCGTGGGTG           TCATTGACCGACTTG  52 361
CXD92_RS01760  346672 ..  346682 +  -2.4  -2.82519   CCAGCGTGTCGCACC                 AGCG CGC CGCC                 TGATTGATGTCATGC  39 190
CXD92_RS01805 NONE
CXD92_RS01810 NONE
CXD92_RS01815 NONE
CXD92_RS01820  357187 ..  357221 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS01840  361395 ..  361419 +  -7.8  -4.96388   CTGAAGCGGCGTCGC          GCCCGGGG TGCGGGTTT TCCCGGGC          TTTTATTTAGTGCTT  86 37
CXD92_RS01845 NONE
CXD92_RS01850 NONE
CXD92_RS01855  364249 ..  364265 +  -3.6  -2.62157   CAAGAAGTAGACGCA              CCCTGG AACGG CCATGG              CTTATCGCATTCATC  40 31
CXD92_RS01860  365316 ..  365343 + -15.6  -2.56596   TGCCCGGGGTGCCGG        GGTGCCTGTCCC AGCG GGGACAGGCACA         TGGATTCCTGCGGGG  74 69
CXD92_RS01865  366296 ..  366324 + -10.1  -4.11216   GCAACAAGCGGCGGG        GTTTGCCGGCGCG GCT CGCGGCGGCGCGC        TTTTCGGCATGCCGC  78 94
CXD92_RS01870  367913 ..  367929 +  -5.1  -3.78034   CCCGGTGGCCAGGGC              GCTGG ATACGTC CCAGC              TTCTTGATGTCGATG  58 494
CXD92_RS01885  370160 ..  370189 +  -4.1  -4.29738   ACATAGTTGACGTAG       TTGCCGGCGCCGT GGCC GTGGCGCACGCAG        TTTTCGTGGATATCG  67 144
CXD92_RS01900  373537 ..  373566 +  -2.7   -4.8622   AGGAGCTCGTCCCCA       CGGGGACTGGCTCC CGA GGGATCAG-CCCAG       TTTTTCCTTCAGCAG  77 118
CXD92_RS01920  378192 ..  378220 +  -4.5  -3.35679   GGCGCGGCCCGCGAA       GCAGCTGCGGGC AGGCAG GCCCG-GGCTGA        TTATCCATGCAACGA  51 79
        mreC NONE
        mreD  379650 ..  379675 +  -3.9  -3.09492   GACGACGTCGAATCT         TCCG-CCGTCTG ATC CGGGCGGGCGCA         TGTTCGAATTCAAGA  45 14
        mrdA NONE
        rodA  383231 ..  383278 +  -4.6  -3.61715   CCCTGCGCATCGATC AGCGCGC-CGTCGGGGGCCGG CTCGCCC CTGGCCGCCAGCACGCGCGCC TTGTTGACCGCGATC  54 496
CXD92_RS01970  389354 ..  389392 + -11.9  -4.42788   TGGTGGCCCAGAACT  TCACCA-GCACGACCTTGC CGC GCA-GGTCCTGCATGGTGA  TTTTCTGGCCTTCGA  88 498
        rsmI NONE
CXD92_RS02000  393126 ..  393160 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS02010 NONE
CXD92_RS02015 NONE
CXD92_RS02020  396418 ..  396449 + -15.9  -4.25104   GGCTGAGCGCCGGCC      CGGGTGCCTGTCC CCGCGC GGACAGGCACCGG       TTTTCCTGCGGGGAC  95 35
        trxB  403193 ..  403203 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS02055  404484 ..  404505 +  -8.7  -3.18582   GCGCCACCAGGCCCA           CCGCCTGCGT ATC GCGCAG-CGG           TTGGTAGCTGAGCTG  56 269
CXD92_RS02115 NONE
CXD92_RS02120  417108 ..  417122 +  -2.7  -2.62184   TGACGCCAGGGAACT               GGCGG GCACG CCGCA               TGGTCTGAGCAGAAG  39 38
CXD92_RS02125  418521 ..  418531 +  -5.4  -3.37533   AGAAGAACGCGTGCA                 GGAA GCG TTCC                 TTGATGGTTTTGGGG  49 438
CXD92_RS02140  419925 ..  419980 +  -9.8  -3.13403   CCAGCACCAGCCAGA GGC-T--GCGCCGC-GCGTCGGCAAAGCG CGC CGCCTGGCCG-CGCAGCGGCGCGTACGCC TCTTCGTCGGCCGCC  60 53
CXD92_RS02155  423184 ..  423194 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 54
CXD92_RS02160  424323 ..  424360 + -10.6  -3.53224   GCCGGTCATGGAGCA  GCC--GGCCAGGCGC-ACG CGC CGTTGCGCCCGGCCACGGC  TTTCGCGCAGCGCTA  70 123
        gltS  425620 ..  425631 +  -4.4  -3.16881   GCCGTTCGTGGGAGG                CATG TGAC CATG                 TTCATCCGCTGGCTC  47 19
CXD92_RS02170  427564 ..  427578 +  -2.1  -3.14931   GATCACGATGCCCGC              GCC-TC CCTT GATGGC               TTCGTCCAGGCTGGC  43 455
CXD92_RS02200  433412 ..  433440 + -10.3  -2.57026   TCTGGATGGGGGAAA       GCGGCCGGC-CGG GCTTG CCGTGCCGGC-GC       ATTGGTGTCACTCTA  57 65
CXD92_RS02235  439876 ..  439920 +    -4  -2.87132   GGCGTGGCGCGGGGG CCGCCGGCGGATGACGCCGCG GCCG CGCGGCGGCAA-TACCTGCGA TGTATCGGCCGACCC  43 12
CXD92_RS02240 NONE
CXD92_RS02245 NONE
CXD92_RS02250  443213 ..  443258 +  -8.9  -3.32769   GACGAAGTTGGCGGT GGTCGGCGTGGCGTT-GTCGGG ATG CACGGCCAGGGCGATGCCGACC TTGATGGTTTCGGCC  59 105
CXD92_RS02260 NONE
CXD92_RS02265  446485 ..  446507 + -10.4  -4.69622   CCTAGCGTCGTCCGC           ACGCCGCGCC GCC GGCGCAGCGA           TTTTTCCCCTTGTCT  93 36
CXD92_RS02270  447941 ..  447956 +  -2.6  -4.08216   CAGGAAGCGCGACAC              CATGTAG TAG CT-CATG              TTTTCCACGCAATAC  58 233
CXD92_RS02295  452837 ..  452852 +    -6   -3.5774   TTACCGCTCAAAGCG              CCGCGG CGAA CAGCGG               TTTCCACGATTCGAT  56 63
CXD92_RS02325  462151 ..  462172 +  -5.7  -3.30771   CCCGCTCAGGACATC           GGTAAGCGC CGCG GCGCTGCCC            TTGTACGGAATGTGC  51 409
CXD92_RS02350  465609 ..  465638 +  -7.7  -3.14132   CTGCCTGAGCGCCGC       GAGCCGCTCGCCG CACA CGCCCAGCAGCTC        TTCGTACACCCCGGC  54 33
CXD92_RS02360 NONE
CXD92_RS02365  467976 ..  467996 +  -3.1  -2.77192   CAGCACCGAGCCATA            GAGCAGCGG CTG CTGCAGATC            GTTCTTGCCGGCCTT  39 97
CXD92_RS02390  474971 ..  474997 + -23.8  -4.79223   TCACTGACGCACAAA         GCGGGTTGCGGC AGC GCCGCAACCCGC         TTTTTCCTGCTGTGC 100 34
CXD92_RS02435 NONE
CXD92_RS02440  486531 ..  486568 +  -8.3  -3.28924   CCATGTCCAGCGAGG   CGTCGTCGGGTACCTGG CCGG CCAGGTAGGCCACGCCG    TTGTAGACAGCCATG  59 441
CXD92_RS02455 NONE
CXD92_RS02460  489181 ..  489224 +  -3.1  -4.58685   GGTCGAAAACTACTG GTAATCCCCCCTATGGCAGGG GGAA TCC-GCCATGAGGGGG-TCGC TTTTTCACAACATTT  71 22
        phaZ  490579 ..  490594 + -11.8   -4.2687   GCGCGCTCCCTGCAA              CGGGCC GCCT GGCCCG               TTTCTGCTTTTTACG  91 48
        rsxB NONE
         nth  491968 ..  491982 +  -3.4  -3.88985   ACATCGTGGGAAACA               CCGTGG AAA CCCTGG               TTTCTGAAGCGTTTT  56 108
CXD92_RS02480 NONE
CXD92_RS02485 NONE
CXD92_RS02490  494911 ..  494921 +  -8.2  -2.52516   AACCTCCTGAAGGAA                 GCCG ACA CGGC                 CTTGCTCATCCGGCA  51 39
CXD92_RS02495 NONE
CXD92_RS02500 NONE
CXD92_RS02505 NONE
CXD92_RS02510  498826 ..  498860 + -30.1  -3.09516   GCTGACCCGCGCGCA     CGCTGGCGGCGCGGC GCCAG GCCGCGCCGCCAGCG     TTCAGTCCTGGGCGC 100 36
        msrB NONE
CXD92_RS02550 NONE
CXD92_RS02555 NONE
CXD92_RS02560  507270 ..  507299 + -19.5  -4.13767   AGCCATCGCCATCAA       CAAAATTGCCCGC TTTC GCGGGCAATTTTG        TTTTCGGCTGCCGGG 100 47
        lplT  515879 ..  515907 +  -6.5  -3.74747   CAGCAGGGCAATCTG        GCGCCGCAGGTAG GGA CTGCAGGCGGCGA        TTTCCTCGGGCTTGG  61 278
        ompR NONE
CXD92_RS02600 NONE
CXD92_RS02605  520082 ..  520092 +  -4.6  -3.10677   TAGCGTAGAATTTAG                 GGCT TGA GGCC                 TTGCCTGCCTTAATT  47 38
CXD92_RS02610  520689 ..  520705 + -10.8  -3.95584   GCTGTAATTTCCCCG              GCCCGG CTCGT CCGGGC              TTTCATTGCTCCAGA  79 34
CXD92_RS02615  521269 ..  521321 + -15.5  -2.79188   AGCGCCCCCCGCGGT GCGCCGGCCTCCCCCGCCGGCGGCCG CAGC CGGCC-CCTGCGCGGG-G-CCGGCAC TCATTCCCTTCCCTC  75 40
CXD92_RS02625  523965 ..  523981 +  -5.1  -3.78034   CCCGGTGGCCAGGGC              GCTGG ATACGTC CCAGC              TTCTTGATGTCGATG  58 494
CXD92_RS02645 NONE
CXD92_RS02650  527707 ..  527733 +  -8.7  -3.53012   ATCCAGCTCGAATAG        GCGCGCCCGC CCCGGCCT GCG-GCGCGC         TTTGGCGCACCGCAG  62 26
CXD92_RS02655  528778 ..  528814 +   -16   -4.2558   GGCGCCTGCCCATTG   CGCGCCAA-TCCCGC CCAATCAA GCGGGAATTGGCGCG    TTTTCCTGGACAATC  95 41
CXD92_RS02660  529693 ..  529703 +  -2.4  -3.01497   AGTAAGGCGGCCGGA                 GCGG GAA CGGC                 TATGCTTTCGGCTGC  41 84
CXD92_RS02665  531105 ..  531137 +  -3.2  -4.72272   CGGCCGGCGCACGCC     GCCGGCGCGCGCCGG CCCT CCGGTTC-CGCCCCC      TTTTTCGTGGAGAAC  75 476
CXD92_RS02675 NONE
        argF  533420 ..  533442 +  -6.3  -2.58714   AAGCGCTAAAATGCC           CCGTTAGAC TTCTT GTTTGACGG           TCCGTTGCTGTCAAA  46 112
        argG  534837 ..  534866 + -23.7  -4.08394   GCGGCAACCGCGCGA       GGGTGCCTGTCCC TGCC GGGACAGGCACCC        TTTTGCCGCAGGTGT 100 41
CXD92_RS02750  547890 ..  547926 + -20.4  -3.34398   ATGGCCTGCCTTCAT   GAAAGCCCCGGTCAATC GCAT GATTG-CCGGGGCTTTC    TCTTTGCCGCGCCGC 100 60
CXD92_RS02760  548840 ..  548862 + -12.7  -5.63517   TGATGTGCCCAAAAA          CCCCGGTCGC GCAA GCG-CCGGGG           TTTTTTCTTTGCGCC 100 65
CXD92_RS02770 NONE
CXD92_RS02775  551805 ..  551815 +  -4.6  -2.92371   CCAGCCAGCCGTAAA                 CCGG CAT CTGG                 TATGGTTGCCTCCAT  44 53
CXD92_RS02780  553549 ..  553559 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS02785  554782 ..  554814 +  -3.2  -3.05844   CCATGTTGCTCGACC      CGACCGTGGACCAC ACGCC GTCGACCACCGCCG      TCTTGGCGTGCAACA  43 244
        egtD  558237 ..  558251 +    -7  -2.71011   GCGCCCGCCACCCAC               GTCCGC AGC GCGGCC               TGCTTACCCGCCCGT  48 366
CXD92_RS02810  559418 ..  559449 + -20.4  -4.37886   CCAGAGAATTCAAAA      CAAAATGCCCGCAA TCGC TTGCGGGCATTTTG       TTTTGTGCGCGATGA 100 38
CXD92_RS02825  560900 ..  560940 +  -5.8  -3.58536   AGGCTGCGCCAGTCT  ACCGCCGCGGCCGGCGCG CCATT CGCGGGGACTGAGGCGGC  TTTGGCCGTCAATTT  57 309
CXD92_RS02835  561654 ..  561709 + -13.9  -4.11216   CCAGTCTTGCCTATT GATGCCCTGCGCG-CCCTATCGTGGA CATAT TCGGCGCCAGGGCCGCGCAGGGCGAC TTTTAACCGTAACGG  85 77
CXD92_RS02840  563195 ..  563205 +  -8.2  -3.14132   GTCCGGCCAGCACTA                 GCGC GGC GCGC                 TTCGTCAGCGGCCGG  56 25
CXD92_RS02870  569089 ..  569108 +  -8.6  -3.68222   TGCCTATATGCATAT            TGTGAAGC GCGT GCTTCGCA             TTATTCAGATTCGCA  65 139
CXD92_RS02875  569424 ..  569445 +  -3.6  -3.86015   ATCCCGGCGGTCCGG           CGGCC-GCC ATCCG GGCTGGCCC           TTTATCCGCCCAATA  57 65
CXD92_RS02880  570588 ..  570602 +  -2.7  -2.69151   TTCCTGCCAGGAGTG               CGGCG ATGAG CCCCG               TAGTATCTGAAGCCA  40 82
CXD92_RS02885 NONE
CXD92_RS02890 NONE
CXD92_RS02895 NONE
CXD92_RS02900  574471 ..  574486 +  -7.5  -2.87132   CCGGTCTCGCCGCCC              CGGCG GCAAGG CGCCG               TATCTGCGAGGGGGG  52 139
CXD92_RS02905 NONE
        groL  576716 ..  576739 + -19.6  -4.86621   CTTCCCAAAAAAAAA          CCCCGCCAGG TTCG CCTGGCGGGG           TTTTTCATTGGAGCT 100 87
CXD92_RS02920 NONE
CXD92_RS02925  581471 ..  581484 +  -9.5  -3.53012   TCGTCCTGGACTGAG               CGGCG GCGC CGCCG                TTTCCAAGCGCGCCG  64 27
CXD92_RS02930 NONE
        pyrF  583673 ..  583708 + -20.4  -2.59748   TAAGAACGTAACCCC    CCGGGTGCCTGTCCCC GAAG GGGGACTGGCACCCGC     TGACTTCTCAGGGTG  95 30
CXD92_RS02970 NONE
CXD92_RS02975 NONE
        phnD  591314 ..  591351 + -11.3  -3.02511   GGCCCGCGTGCGCGG   CCA-GTCGCTGCGCCG CGCGCGC CGGCGCATCGGCATGG   TGTTCCAGGAGTACA  62 261
CXD92_RS02990  592497 ..  592528 +  -6.7  -3.78329   TCAATACCTGGATGC      GGCGC-TTCGAT CCGGCCGAC ATCGAACGCGCC      TTTCAATTGCTCGAC  64 101
        phnE NONE
        phnE  594747 ..  594767 +  -3.9  -3.59979   TCAATTTCCGGGTTA            GCTTTGGGT ACT ATCCTAGGC            TTTCGGCTCGGCGGG  51 167
CXD92_RS03010 NONE
CXD92_RS03015  596625 ..  596643 +  -2.2  -3.53091   CCGGTGAGGGTGATG             GCGGCGTC GAA GGCGCGGA             TTTGCGCCAGCGCGT  47 262
        rsmD NONE
CXD92_RS03030 NONE
CXD92_RS03035  599104 ..  599128 + -15.7   -3.9941   CCTCCCCCCCTCGCG          GCGCGCCGG CCTGTCA CCGGCGCGC          TTTCGTTGTCGGCCA  91 59
        benE  600287 ..  600313 + -12.2  -3.57144   GGCCTACGACGGCCA         GCGCACCTCGGC CAT GTCGGGGTGCAC         TTTCAGGATCCGGCA  74 45
CXD92_RS03055 NONE
CXD92_RS03060  604471 ..  604487 + -13.7  -4.72272   CGCCTCAGAAAAAAA              GCCCTCC GCT GGAGGGC              TTTTTCGTGGGCCGC 100 49
CXD92_RS03070  606840 ..  606882 +  -3.3  -3.66874   TCGCCGTCGGTCAGC CTGAGCACGCGCGCGCGC GCCTGATA GCGC-CGCGCATAGTCGG TTTCGATGCGGTTGA  51 504
CXD92_RS03105  617098 ..  617112 +    -7  -3.41636   CGCCGACGTTCCGGG               CGCGCC CTC GTCGCG               TTCCTTGCCTTGCTT  56 172
CXD92_RS03110 NONE
CXD92_RS03115  619187 ..  619230 + -10.9  -2.57344   ATCAACCTCAACTGA CGGCA-GCCCG-GCGGGCGGC CCCG GCCGCCCCCACTGCCGTGCCG ATTGTCGCAAGACTG  59 26
CXD92_RS03120 NONE
CXD92_RS03125  621789 ..  621799 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 110
CXD92_RS03130  622982 ..  622995 +  -3.7  -2.71791   CAGGCCCTTCCTGCA               GCGGG CCGG CCGGC                GTTTCAACAAGACCT  41 204
CXD92_RS03140  623268 ..  623296 +  -3.8  -5.55769   CCAAACACCAAAAAG       GGAAGC-TAGCGG TTAC CTGCCGTGCTTCC        TTTTTTCTTGTAGCC  95 38
CXD92_RS03145  623400 ..  623419 +  -6.3  -3.94877   CTCCAAACACTTCAA            GGCCCGC CGCGTC GCGAGCC             TTCTTGTTCCAGGAT  64 35
CXD92_RS03150  623885 ..  623904 +  -7.1  -3.14468   CGTGATCCGGCCGTA            GCGCG-GC CCGGC GCGCGCGC            TTGCCTATAATGGCG  52 25
CXD92_RS03155 NONE
CXD92_RS03165 NONE
CXD92_RS03170  626594 ..  626606 +  -4.7  -3.54424   ACTGCCCTGGCTGGC                CGCCG ACA CGCCG                TTTCCCCCGGTCGAA  52 50
CXD92_RS03180  628104 ..  628141 +  -3.2  -3.00923   GCCGCCCTGAGCACG   CGCGGGGCGGCAAAGT CGATCT ACAATTCCGCCCCATG    TCTATCCTCTTCCAC  42 31
CXD92_RS03185  629212 ..  629224 +  -6.2  -4.74103   CCCGAGCGGGCATGG                GCCC CAAGA GGGC                TTTTTGCCTTGGGCA  82 49
CXD92_RS03195  631320 ..  631355 +  -8.8  -3.54424   GCGCATCGCGCGGCC    CGGCCGGCCGATCGGGC GAG GCCTGCGCGCCCG-CCG    TTTCGCGGAATGCGA  62 67
CXD92_RS03225  640193 ..  640210 + -10.5  -3.21218   TGCCAGTTGGCGCTT             GGGCGCG TTGC TGCGCCC              TTCCTGCTCGGGCGT  60 82
CXD92_RS03245 NONE
CXD92_RS03250 NONE
CXD92_RS03255  644680 ..  644692 +  -2.6  -3.07816   CGTCTCCACTAAGGG                CGGG TGGAT CTCG                TTGGCTGCCTCCAGA  41 29
CXD92_RS03260  646081 ..  646099 +  -6.7  -3.77832   TGTTGCGGCGCGCAT            C-CACCGG GTGG CCGGTGCG             TTCTTCGCTTTGCGC  61 313
        galU  648596 ..  648614 +  -4.4  -2.71924   GCGCTCGGTAAAGGC             GATGACCG CGC CGGCCACC             ATTTGCGGCGCCATG  40 299
CXD92_RS03290  652779 ..  652805 +  -9.5  -2.62184   CAGGCGCGCGCGCCG        GCTG-GCT-CGGC GGC GCCGAAGCGCAGC        TGCTGTACCGCCGGG  55 143
CXD92_RS03305  656676 ..  656690 +  -2.8  -4.09685   CGGAAAAGCGGCGCG               TGCC GGACAGG GGCA               TTTTAGGGGCTGGCG  59 521
CXD92_RS03315 NONE
        dusB NONE
CXD92_RS03325 NONE
        purH NONE
        ruvC NONE
        ruvA  662209 ..  662257 + -10.8  -3.30124   CGCGACCGCCTCCAG CGCGGCGGGCGGCGC-G-GCCAAC CCC GAGGGCGCGGCGCCGCTGGCCACG TTGTCGCGCGTGAGC  66 83
        ruvB  665566 ..  665600 + -14.9  -4.84359   GGTCGATGGGGTCGG    GCCGCGC-GCGGGCGC CCGC GCGCGAGCTGCGCGGC     TTTTTCTCGGCCTCG 100 272
CXD92_RS03370 NONE
CXD92_RS03375  669690 ..  669725 +  -9.1  -3.03124   AACGCATCGTAGTCC   TGCATCCAGGCGCGC CATTGCGC GCGCGCCTGG--GCA    TGTTCACGCATGGCC  55 336
CXD92_RS03390 NONE
CXD92_RS03395 NONE
CXD92_RS03400 NONE
CXD92_RS03405  674748 ..  674791 +   -21  -3.53091   CTACAAGATAGACTG ATCCCCGGGTGCCTGTCCCC GCAG GGGGACAGGCACCCGCTGAC TTTGCCCGCCAGGCT 100 25
CXD92_RS03410 NONE
CXD92_RS03415  677343 ..  677356 +  -2.4  -4.10144   CCTTGATAAAGCGCG               CGAT GCGCGG ATCG                TTCTTGTTGTCTTCA  58 151
CXD92_RS03425  679327 ..  679337 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS03430  680828 ..  680854 +  -5.9  -4.14243   TAGAGTGGGGTCTCT        GCAACACGTGCC CCAG GGCAC-TGTTGG         TTTTGCGCTGGAGTG  66 512
CXD92_RS03460  684620 ..  684633 +  -5.9  -6.06723   CACAGGATTGATCAA               CCGCT TTCG GGCGG                TTTTTTTTTCGCCCC 100 468
CXD92_RS03465 NONE
CXD92_RS03470 NONE
CXD92_RS03475  688012 ..  688046 +  -2.6  -2.74012   TCGGCACGCCATCGA     CCTGGTGCGCTACAGC AAC GGGGTGGTGCGCCGGA     TCATTGCGCTGCTGA  38 50
CXD92_RS03480 NONE
CXD92_RS03485  689371 ..  689395 + -15.7  -4.67038   CCTTCTTCTTTCTAA          GCCCTGCTGGC CGA GCCAGTGGGGC          TTTTGCTTTTGGGGC 100 77
CXD92_RS03490  690205 ..  690223 +  -3.9  -3.28924   GGCCGGCTTCGAAGG            CGACTTCC TCCA GGAA-TCG             TTCTACCAAGCCATC  47 186
CXD92_RS03505 NONE
CXD92_RS03510  692367 ..  692384 + -10.5  -3.65351   GCCGATTGACGGTTG             CCCCTGC TCAC GCGGGGG              TTTCCGTCAGCCTGC  70 43
CXD92_RS03515 NONE
CXD92_RS03520 NONE
CXD92_RS03525 NONE
CXD92_RS03530 NONE
CXD92_RS03535 NONE
CXD92_RS03540  694857 ..  694870 +  -9.5  -5.46657   GGGCGCAACTGGAAC               CCGCC ACAT GGCGG                TTTTTTATTGCCCTC 100 69
CXD92_RS03545 NONE
CXD92_RS03550 NONE
CXD92_RS03555 NONE
CXD92_RS03560 NONE
CXD92_RS03565  699248 ..  699268 +  -3.1  -5.32944   ATGAGTAATCCCGAA            CGCCGGGAT CTC GTCGCGGCA            TTTTTTCATTATCCG  89 33
CXD92_RS03570 NONE
CXD92_RS03575 NONE
CXD92_RS03580 NONE
CXD92_RS03585 NONE
CXD92_RS03590  704780 ..  704792 +  -6.2  -5.80817   CCAATGAATGAACGG                GCCC ATAGG GGGC                TTTTTTTGTGTTGAG 100 30
CXD92_RS03595 NONE
CXD92_RS03600 NONE
CXD92_RS03605 NONE
CXD92_RS03610 NONE
CXD92_RS03615  707563 ..  707583 +  -9.7  -3.54741   GAACAGCACGCGGTC            GCCAGCC TGAAAGC GGCTGGC            TTTCACCAGCTGCTC  64 405
CXD92_RS03630  708214 ..  708224 +  -8.2  -2.78216   GCACGTCGACCATGC                 CGCC CAG GGCG                 TCGTTCGTGACGATG  52 235
CXD92_RS03655  712096 ..  712114 +    -3  -2.65264   GGCGGGCGCCAGCCC             GCCCCG GCAGCCA CAGGGC             TCCTATCGATCGTGA  39 48
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA NONE
        tolB  716029 ..  716048 +  -2.8  -2.54325   CAACGTGGGGCCCTT            TTACCCGT TAAC ACGTGTGA             CTCTCTTTGCAAAGG  39 15
         pal  716599 ..  716628 + -21.5  -4.54727   AGCAGCCCCACCACG       CGTCGGGACGGTC ATCC GGCCGTCCCGACG        TTTTCGTTTCAGACC 100 56
        ybgF NONE
CXD92_RS03695 NONE
CXD92_RS03700  719279 ..  719306 + -10.5  -4.15453   ATAGGATGAGCACCT        CGC-CCGCCGCC AGCCC GGCCGCGGCGCG        TTTTCCGCTGACTTC  78 120
CXD92_RS03705 NONE
CXD92_RS03710  720676 ..  720687 +  -2.2  -3.21099   CCGGCCCTGCACTAC                GCGCG CCA CG-GC                TTCCTGGTCACGCCC  42 465
CXD92_RS03720 NONE
CXD92_RS03725  722791 ..  722845 +  -2.5  -2.70932   GCGCGCCAGCAGCCC GCCGGTCCAGGCCCGGCCCCAGGCCC GCAA GGTGTTGGCGCCGG-CGTGGCCCAGA TGCTTCCAGAACAGG  38 500
CXD92_RS03735  725955 ..  725969 +  -4.2  -3.64703   TGCGCGACATGATCA               GCGG CGTGTGC CCGC               TTTCGGTCAGCGCGA  51 297
CXD92_RS03745  728453 ..  728465 +  -9.1  -2.52464   GCCGCCAGCAAGGCG                TCGGC CAG GCCGA                TGAATTGCGCCACGC  51 100
CXD92_RS03765 NONE
CXD92_RS03770  735134 ..  735150 +  -2.2  -3.53012   CAAGGAGGCTGCAAC              GCGGTA TCCTC TACCAC              TTTGGCCCGAAGACA  48 94
CXD92_RS03775  736273 ..  736292 + -16.4  -3.15147   TCCGCCAGCCGGCAT            GGGCGGCG GACG CGCCGCCC             TGTCTATTGCTTGAC  81 388
CXD92_RS03800  739767 ..  739781 +  -3.4  -4.07687   CGCGCTTGGCGTCGG               CCTCGG AAA CCGGCG               TTTTCGCCGCCCGGT  60 247
CXD92_RS03835  749009 ..  749023 +  -2.1  -3.84406   CGCTCGCGCAGCGAC               GATTG CGGGC CGATC               TTCTTCTGGTAGGCG  56 430
        nspC  751934 ..  751953 +  -4.2  -3.18366   AGGATTACGTAGACA            GCCTG-TCC TGA GGAACTGGC            TCTGTTGATTGAAGC  45 15
CXD92_RS03855  753337 ..  753347 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 119
CXD92_RS03860  754456 ..  754482 + -10.1  -3.06133   TGCCGGCAGCGCAAC         GCTGTGGCCGT TTCGT ACGGCTACCGC         TTCAATCGAACATTC  60 130
CXD92_RS03865  755163 ..  755206 +  -2.8  -3.91897   GCATCACCATCGAGG CGGTCGCGGAAGCGGCGCGC TGAC GCCGGCCGCGTTCCCTACCA TTTGTACGTGACCCG  58 3
CXD92_RS03880  759861 ..  759877 +  -5.1  -3.78034   CCCGGTGGCCAGGGC              GCTGG ATACGTC CCAGC              TTCTTGATGTCGATG  58 494
CXD92_RS03900 NONE
CXD92_RS03905  764542 ..  764570 +  -7.9  -3.07113   GGCCACGGCGGCAGC        GCGCGCGGCGGCG CTT CGCCACTGCCCGG        TTCCATCAGGTAGTA  52 295
CXD92_RS03915  766164 ..  766198 +  -8.5  -3.06183   TCGGCCAGCCATTGC     TTGCGCGCCGACC ATACCGGCA GGACCGCGCGCAA     TTCCGTGCCGATGCA  55 501
CXD92_RS03940  770598 ..  770618 +  -8.2  -3.12999   GCCGGGTATGAGTGT            GCGAGCCG CCGGC CGGCTCCC            TTACCTGTCGGATAC  56 101
CXD92_RS03945 NONE
CXD92_RS03950  771808 ..  771833 + -13.3  -5.15969   GGGCGCATAGCGAAA         GCCGATACCGC AAAC GTGGTGTCGGC          TTTTTTGCGTTCGCG 100 108
CXD92_RS03960 NONE
CXD92_RS03965 NONE
CXD92_RS03970  778430 ..  778464 + -13.5  -2.99947   CATTGGGCGCCGCAC    GCCTGGCATCGGCGGC GCCG GCCGGCGAGGCC-GGC     TATCTGTGAAGATTC  70 152
CXD92_RS03980 NONE
CXD92_RS03985  781992 ..  782007 +  -7.5  -3.14211   GGTGCCCCGGCCTCG              CGGCG CGTATC CGCCG               TTGCTCGCGCGCAGT  54 62
CXD92_RS03995  782956 ..  782977 +  -2.1  -3.07291   CTGAGCGCTACACAC           CGGTTGCGT CGGT GCGAATCCG            TTCAATCGACTACTT  41 161
CXD92_RS04000  788142 ..  788170 +   -11  -3.31779   AAGCGCCGTGAATCA       CGGC-CCGCC-TGC CTC GCGCGGCGGCGCCG       TCTCTTTGCGTTCTT  66 40
CXD92_RS04005 NONE
CXD92_RS04010 NONE
CXD92_RS04015  793090 ..  793114 +  -2.7  -3.59979   CGCCTAAGGAGTAAC          CCTGCAAATCG CCG CGTTATGCAGA          TTTCGCATAACCGGC  49 27
CXD92_RS04020 NONE
CXD92_RS04025  795170 ..  795186 +  -6.5  -3.54424   ATATCAATGGAACTG              GGGCG TGCTGTT CGCCC              TTTCCCCGGATGGCG  56 129
CXD92_RS04035 NONE
CXD92_RS04040  797363 ..  797379 +  -7.9    -3.273   CCGTTATCCAATACT              CAGGCGG TAG CCGCATG              TCTTCCCTTTTCTAC  56 41
CXD92_RS04045  798709 ..  798722 +  -2.3  -3.44848   CGCTGTTGACGTAGA               AGACG TGGA CGTCC                TGTTTGGTGAAGCCC  47 497
CXD92_RS04070  803340 ..  803359 +   -15  -3.14564   CCGGCGAGCAAGCCC            CAGGCGGC GCCG GCCGCCTG             TTGCTCCCGCCATGG  76 151
CXD92_RS04075  804710 ..  804728 + -10.2  -3.04461   GTCGCCGGCGCGCAG             CGCGGCGA GGA TCGCGGCG             TGTTCGGCCTGGGTC  59 182
        pepN  820419 ..  820431 +  -3.3  -2.74192   AAAGCCTTGGATCTG                GCTGC TTA GGAGC                TACTCTTGAAACGTA  40 17
CXD92_RS04145  821622 ..  821656 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS04170 NONE
        serB  828157 ..  828179 +  -6.1  -3.16039   TCGCGACGGCCTCCC           GCCGCCCGG CCGGC CCGCGCGCC           TTACTCCGGCTGCTT  51 131
CXD92_RS04185 NONE
CXD92_RS04190 NONE
CXD92_RS04195  833322 ..  833338 +    -3  -4.11484   CATCGATTGCGGCTC             CAGCACC AGCC GGT-CTG              TTTTCAGCACTTGCC  61 509
CXD92_RS04295 NONE
CXD92_RS04300 NONE
CXD92_RS04305 NONE
CXD92_RS04310 NONE
CXD92_RS04315  857537 ..  857553 +  -2.1  -3.05384   GCTCATGCTCGCGCG              TTGACGC GCA GCGCCCA              TTCGGTGACGGCCAC  41 22
CXD92_RS04350  864810 ..  864843 +  -6.9  -3.09516   GGTAATCTCGCTTTG     ACTAATTATCCAAGA ATAT TCTTTGATAATTAGG      TTGCGTCATGAAAAG  52 108
CXD92_RS04355 NONE
        mexI NONE
CXD92_RS04365 NONE
CXD92_RS04370  871473 ..  871483 +  -3.2  -3.28712   GCGTATCGCCGGCCT                 TCAG GTA CTGG                 TTGTCCAGGCCCGCG  47 239
CXD92_RS04385 NONE
CXD92_RS04390 NONE
CXD92_RS04395 NONE
CXD92_RS04400  879414 ..  879465 + -12.9  -2.53876   CGATCGCCTCGGTCA GGAACTGCGGCGCGTCGCCGCGCA GCCGG TCCGCGCCCA-GCGCCGCGGTGCC TCCCTTCAGGTAGGC  62 232
        lrhA NONE
CXD92_RS04430  886943 ..  886961 + -17.4   -5.1971   CACCAGTTTTCTCAT             GGCCGCGC CCA GCGCGGCC             TTTTTGCTTTTTCCT 100 303
CXD92_RS04465  895935 ..  895972 +   -12  -3.05816   ACTGGGTAGCCTGCC   GCAGCGACGCGAAC-GC GTGCA GCTGTTCGAGGCGCTGC   TTCCATGAGCGCTCC  66 470
CXD92_RS04495  901447 ..  901457 +  -4.6  -4.07568   GGGTGCACCATCAAA                 CGGC ACC GCTG                 TTTTCCCCAGGCCCG  62 31
CXD92_RS04500  902521 ..  902560 +  -2.8  -3.90291   TCGACCACGGTCTTC  TCGATTTCCAGCAGGACCA CGA TGG-CATGCTCGATATCGC  TTTCGTTGACCAGCT  56 434
CXD92_RS04510  904644 ..  904654 +  -4.6  -3.36327   CGGCCGCCTCGACAT                 TGCG CGC CGCG                 TTGTAGATGCGCTGG  49 255
CXD92_RS04535  909086 ..  909100 +  -2.1  -2.50816   AGCCCCAGCGGCCGA              GG-TCC TGCA GGATCC               ATTCGTAGATGACCA  37 520
CXD92_RS04565  915449 ..  915460 +  -7.2  -2.52623   TGCGTGGCCCCGGGC                CGCC CGTA GGCG                 ATGTTCTCGGCCAGC  48 497
CXD92_RS04575  917865 ..  917881 + -11.5  -2.77013   GAACGCCTGGGCTGA              GCGCGGC GAT GCTGCGC              CTTGTTACCGACATC  62 26
CXD92_RS04580 NONE
CXD92_RS04585  918372 ..  918391 +  -4.2  -4.00042   GACTACCCCGATACC            GGCCGT-TG AAC CGCGCGGCC            TTATTTGCTGCGCAC  59 17
CXD92_RS04595  920410 ..  920424 +  -7.1  -2.70932   AAGGTCAGCGTGCTG               CCGCT GTCGA AGCGG               TAGTTCAGCGCCGGC  49 365
CXD92_RS04610  923305 ..  923333 + -16.9  -5.53288   CGGCCAGACCGGAAA        TCCCATGCAGATC ACT GATTTGCATGGGA        TTTTTTTCGCTTCGG 100 59
CXD92_RS04615  926443 ..  926501 + -29.8  -3.25072   TTTCATCCCCTGTCC TGAAGC-CGGCCATCCGGCCG-CCGCGGC GCAA GCCGCGGGCGGCCGGATGGCCGCGCC-CA TTCCGTTCTCCTCCC 100 49
CXD92_RS04620 NONE
        accB NONE
CXD92_RS04630  929986 ..  930006 +  -3.9  -2.93853   AACACATTTCGTTCA            CGCGACC CTGAACC GGTCCCG            GTTTCGTTGCCACGG  43 15
CXD92_RS04635 NONE
CXD92_RS04640 NONE
CXD92_RS04645 NONE
CXD92_RS04650 NONE
        accC NONE
CXD92_RS04665 NONE
CXD92_RS04670  937061 ..  937079 +  -6.7  -4.11216   CACCCGCCGACGTCG            CGCGTTGC AGCC GCA-CGCG             TTTTGCAAGTAACGG  67 137
CXD92_RS04675  937401 ..  937416 +  -3.2  -3.10775   GTTATCGTCGCGGTT              GCGC CACCTGGA GCGC               CTTTTGCATGCGCGT  44 105
CXD92_RS04680  938627 ..  938639 +  -6.3  -2.88544   CGAAATCCTTTACAA                TTTGG CTA CCAAA                TGTGTAGGAGTGGAC  48 93
CXD92_RS04685  938883 ..  938904 + -17.3  -3.84451   TTGAGGGGCGCGCGA           CGGGCAGCC GGCA GGCTGCCCG            TTTGCATTTCGCCCG  95 37
CXD92_RS04690  939364 ..  939374 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 73
CXD92_RS04695  940436 ..  940472 + -15.7  -3.14132   CATGCCACCGGCATC    CGGCCGCTCGTCGACCT GCA AGGCCGTCAGGCGGCCG    TTCCTGCACGGGCCG  77 82
CXD92_RS04710 NONE
CXD92_RS04715  944610 ..  944622 +  -9.1  -3.17075   GGCCTATGCGCCGCA                TCCGG TGG CCGGA                TTCGCTTAGCCGCCG  59 4
CXD92_RS04730  947146 ..  947179 +  -5.8  -3.62046   CTGCCCGGGCTGCTG     CACGCGCGCGGGCG CGCCGT CGCTGGGGCGCATG      TTGTTCAGGAAGTCG  57 255
CXD92_RS04755  953823 ..  953833 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS04760  955104 ..  955155 +  -9.2  -3.21099   GGCCGGAACGTCGGG CAGCG-CCGGCGAGCGCTTGCGG CTCGTGA CGGCCAGCGCGCGCAGGTCGCCG TTCCTGATCAGCGGC  56 292
CXD92_RS04770  957057 ..  957088 + -11.6  -2.81133   TACCCACGCAAACGA      GAGCCCCGATACGGA TTG TCCA-GTCGGGGCTC      TCTGCTGGGTGCGTC  63 238
CXD92_RS04780 NONE
CXD92_RS04785  958859 ..  958884 + -18.3  -4.55798   TTAACAAACTATTTT         GCCCCGCGCGA GGTG TTGCGCGGGGC          TTTTCATTTCCCCTC 100 291
        gyrA NONE
        serC NONE
        pheA  968366 ..  968417 +  -4.5  -4.84761   GGCGTGGTTGACGCA CACCA-GGCGGCCGCCGTGACGGA GCGTGTG TCCGTC-CGGCG-CTGCCATATTG TTTTTCTGCAGGTAT  82 47
CXD92_RS04840 NONE
        aroA  970661 ..  970674 +  -3.1   -3.6692   GCGGGACTGAACGGC               GCC-TG CCC CATGGC               TATTTTCGCATCCGC  53 31
CXD92_RS04850  971343 ..  971353 +  -6.8  -3.91984   TCTGGTGCGCCTAGC                 CACG GCG CGTG                 TTGTTTCGGCAGTAT  66 27
CXD92_RS04855 NONE
CXD92_RS04860  973647 ..  973676 + -16.6  -5.00616   TTGGTGTTCTACCGG       CAAAGCCCCTTG CTTGTT CAAGGGGCTTTG        TTTTTTCGGGCCGGC 100 67
CXD92_RS04865  974145 ..  974159 +  -3.4  -3.56092   TACTTCCTACCGAGA               GCCCGC GCT GTGGAC               TTTGAACCCTGGTGG  49 59
        lapB NONE
       rfaE1 NONE
        rfaD  977305 ..  977329 +  -4.2  -3.40597   CTGAAGTAGCGGATT         TGC-CCCGGGT AATT GCCCGGGTGGA          TGTTTGCGTGCACCG  49 32
CXD92_RS04885  977952 ..  977962 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS04890  979010 ..  979032 + -14.1  -3.78934   GCCAGCGCGGCTAAA           CCGCCTCGG CCGAT CCGGGGCGG           TTATTATCGGCGGCA  83 69
        cysM  980294 ..  980343 +   -17  -3.01712   CCAGCGGCGCCGGAT CGGCCGGCAGCGCGACCGGCGCG AACAC CG-GCAGGCCGCGCTGCCAGCCA TGTTCGACCAGGAAG  82 361
CXD92_RS04905  982126 ..  982141 +  -7.5  -3.08006   ATTGTGCAATGCGGT              CCCGG GTTTCG CCGGG               TAATTATTGTTATTT  54 53
CXD92_RS04910 NONE
CXD92_RS04915  983875 ..  983894 + -16.4  -5.75945   CACGCAGAGAGAAAG            CCGCGGGC TGTC GCCCGCGG             TTTTTTTTCGGCCAT 100 52
CXD92_RS04920 NONE
CXD92_RS04925  986663 ..  986678 + -11.8  -5.86332   CCGCTTCGGCGAGAA              CGCCCC GCAA GGGGCG               TTTTTTTTGCCTTGG 100 46
CXD92_RS04930  987936 ..  987952 + -11.5   -3.5944   GCGCGGCGCCAGCGC              CCCGGCG TAT TGCCGGG              TTTCGGCATCTCGAT  72 95
        cysA  991006 ..  991039 +  -5.1  -2.71712   CCTCGGCGTGCTGGA     CGCGGTGGCCACGCGC TAC GGGCGCG-CCATCACG     GTTTACCGGCCCGAC  45 264
        cysD  992778 ..  992789 +  -3.6  -3.90048   GGCATCACCATCGAT                GTGG CCTA CCGC                 TATTTTTCGACACCC  59 330
CXD92_RS04965  995290 ..  995310 +  -4.5   -3.6215   GCCAGTGGTAGGGGG            CCGCGCCCG TCG CGGCAGTGG            TTTGACATGCATTCG  52 80
CXD92_RS04970  995830 ..  995845 +  -4.6  -4.62069   CCAGGCAGCCAGCCA              GTCGGC CTAT GCCTAC               TTTTTCCCGTAGCAG  75 86
CXD92_RS04980  997391 ..  997442 + -22.6  -2.87132   TTTGTGTCTGGCACG GCTTTCCGCAATAAAAGGGCACCC GCAA GGGTGTCCTTTTATTGCGAAAAGA TATCTGGAAGAAAGC 100 81
CXD92_RS04985  998306 ..  998323 + -14.1  -5.14563   ATTCCCGATCAGTAC             GGCGCGC CGTG GCGCGCC              TTTTTTCATCCCGGC 100 60
CXD92_RS04995 1000690 .. 1000708 + -17.4   -5.1971   CACCAGTTTTCTCAT             GGCCGCGC CCA GCGCGGCC             TTTTTGCTTTTTCCT 100 244
CXD92_RS05015 1004541 .. 1004573 +  -3.4  -3.80733   AGCGGCCGCCGCCGG      CCCGGCGATT AACGCAAATTTAA AAACGCCGGG      TTATTCTGGCCTGCC  56 69
CXD92_RS05030 NONE
CXD92_RS05035 1010853 .. 1010883 + -25.6  -3.55444   CGCGGCCGTCCAAAA       CAGACAGGCCGGCA AGA TGCCGGCCTGTCTG       TTTGCGCAGTGGCGA 100 46
        aceE NONE
        aceF NONE
        lpdA 1024010 .. 1024033 + -18.2  -2.52464   CGCGGCATGGCAGCA          CAAGGGCCCC TCGC GGGGCCCTTG           TGCGTTGGCGCGGCG  85 45
         tkt NONE
         gap 1030504 .. 1030546 + -21.4  -4.07568   CTGAACAGGGCGCAA GGGCCAGGTTGGTTTTCCCG TCA CGGGGAAACGGATCTGGCCC TTTTCGCAGGCAGGC 100 51
         pgk 1031991 .. 1032006 +    -6  -3.01712   TCGAAGCCGGTGATG              CCCGAG GCGG CGCGGG               TCTTGAGCGGCCCGG  48 227
CXD92_RS05155 NONE
CXD92_RS05160 1041929 .. 1041945 +  -2.1  -3.01712   TCTCTTGCTACCCAT              GCCATGC GCA GCAAGCC              TATTGACGCGCCCGG  41 68
CXD92_RS05165 1043307 .. 1043341 +  -6.3  -3.64487   GCTGCAAGTCGGCGC    GCTCGCGCG-CCGGCA GGCC TTCCAGCCGCGCGACC     TTCTTGGCCGTGTCG  59 456
CXD92_RS05175 1045207 .. 1045232 +  -3.9   -4.7416   CGCCGCCCGGCAATA         GGGCGTGCGCTA TAG TGG-GCGCGCCG         TTTTTCAGATTTTCA  77 25
CXD92_RS05180 NONE
CXD92_RS05185 1046692 .. 1046702 +  -8.2  -3.02511   GCCGAGGCCGAACGC                 GCGC CGG GCGC                 TGTTCAGCCGGTCGG  55 264
CXD92_RS05200 1048693 .. 1048717 +  -7.8  -3.93369   TGGCACACGCGCGCC          TCGGTGACGT TGAGC ACGGCGCCGA          TTTCCTTGAGGTTCA  67 436
        flhD NONE
        flhC 1050711 .. 1050751 +  -4.6   -2.7386   AAAAGCACCAGAAAA CCCCCCATAACCCG-CG TTTTTGCC CGACGGGTCAGGGGGGA  TCATTGGCGTCGGTT  43 64
        motA NONE
        motB NONE
CXD92_RS05230 NONE
        cheA NONE
        cheW 1055635 .. 1055657 + -12.7  -3.90856   TGACGGCGGTCAGTC          CG-CGGGCGG TGCG CCGCCCGTCG           TTTCGTTCAACGCTT  82 38
CXD92_RS05245 1057718 .. 1057753 +  -7.5  -2.82516   ACTTTCCCATCCTGG    CCGATTTC-GCGCGCC AGCGC GGCGGGCCGGTATCGG    TGTGGTGCTGCGCCG  52 341
CXD92_RS05255 1059312 .. 1059351 +  -2.1  -4.43909   CGACCGCGGGCATCG CGTTT-GACGCCCCGGTCC CAAC GGAGCGG-GCGTCCGGACA  TTATTTTCTTGGAGT  67 19
        cheY NONE
        cheZ 1060582 .. 1060600 + -17.4   -5.1971   CACCTGTTTTCTCAT             GGCCGCGC CCA GCGCGGCC             TTTTTGCTTTTTCCT 100 206
CXD92_RS05290 1063561 .. 1063584 +  -6.6  -3.68351   TGATGCCGGTGTTGG          TGGCG-GCCAC CAT GGGGCGCGCCG          TTTCCATGGTGCGCA  61 231
        dacB NONE
CXD92_RS05360 1079203 .. 1079217 + -11.4  -6.34424   CCGCCCACAGGAAAA               CCGCCT TGC AGGCGG               TTTTTTTTTTGCCGC 100 59
CXD92_RS05365 1080573 .. 1080597 +  -3.4  -3.34398   CCCTGGCCTGCGGGG         CGGGACCGGGC ACAG GACCGG-CGCG          TGTTTCGCGCACGAC  46 77
CXD92_RS05370 1083618 .. 1083632 +  -2.7   -4.2679   GCGAGGAGGGTCTAT               CCCCC GCGGA GGAGG               TTTTCCTGGAGCTTG  63 42
CXD92_RS05380 1086066 .. 1086109 +  -8.6  -2.66316   GATTACGCAATTGAA GTAGCACCCCGTAGCACGCG GGGG TGCGTGGCGCGGGGCGCGGC TGGTATGATGAACGC  52 22
CXD92_RS05385 1086464 .. 1086516 +  -7.4  -3.66999   GCCTGCTGATCAGCC GCCGCTGATCACGGCGGGGCGGGC CGCGC GTCCGCCCCGGCATGCACAATGGG TTTGCGTAGATCGGT  63 18
CXD92_RS05390 NONE
CXD92_RS05395 1087407 .. 1087428 +    -5   -3.7282   GGGCGTGCCCCATTC           GCGGCTGG TTTCGC CCGGCCAC            TTGTTGGTGGCGTCC  58 146
CXD92_RS05405 1090184 .. 1090204 +  -3.1   -4.4017   CCAGCGTGGGCGCGC            AGATCGCCA GGC TGGCGGCCA            TTTTCTCGACCTTGG  68 422
CXD92_RS05420 1091955 .. 1091971 +  -4.4  -3.27704   GTAGCATCTTTCCGG             CG-TGCG CTGC CGCATCG              TTCACTTTCGCAGCT  49 89
CXD92_RS05425 1094554 .. 1094568 +  -3.4  -2.62184   GGCGGCTGTGGGCCT               CGCTGG AGA CCGGCA               TGGTGTACCGGGCCG  39 283
CXD92_RS05435 1096163 .. 1096197 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 221
         ppx 1105219 .. 1105253 + -21.4  -2.52464   CCTGAAACCCGATCT     CCGGGAGCCTGTCCCC GAA GGGGACTGGCTCCCGC     TGACTTCCGGGGAGC 100 36
CXD92_RS05505 1112056 .. 1112081 + -10.3  -3.53012   GCGATAGTACTTGAT         CTGGCCGGCCT GGAC GGGCCCGCCGG          TTTCAGGCGGGCCGC  67 34
CXD92_RS05510 1113543 .. 1113557 +  -5.6  -3.02144   CCGACGCGCAGGGCA               TGAGCC TGG GGCCCA               TGTTGCGCGGCCTGG  47 419
        dusA 1117101 .. 1117135 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS05555 NONE
CXD92_RS05560 1121629 .. 1121639 +  -3.2   -3.7614   GACTGGGCAGCTGGG                 CTGG AAG TCAG                 TTGTTCGTCCTGATT  56 2
CXD92_RS05565 1122670 .. 1122701 +  -9.4  -3.03243   CCAGTCCGCTGCCGG      GCGTTTCGCGGTGGG CGG CCCGCCG-GTAATGC      TCTTCGAAGATCCGT  55 174
CXD92_RS05575 NONE
CXD92_RS05580 1127496 .. 1127518 +  -5.5  -3.72324   CGCCGGCTGGCGGCG          CA-GGCGGCC TGAT GGACGCCCTG           TTCTTCCTGGAGGTG  57 14
CXD92_RS05585 1128599 .. 1128618 +  -6.4  -3.73775   GGCTATACCGGGCTG            GTCAGCCTG GGG CAGGC-GGC            TTTCATGGGCCTGGG  59 239
CXD92_RS05595 NONE
CXD92_RS05600 1131206 .. 1131220 +  -3.5  -2.78384   TCAAGCACTACAAGC              GCC-GC AAGC GCTGGC               TGTCATGACGCGCGC  41 3
CXD92_RS05605 1133115 .. 1133136 +  -2.9  -3.12351   GCAGGCAGGTGGCGG           TG-CGTACCG GCG CGGTCCGGCG           TTGCGTATCCAGCGC  44 50
CXD92_RS05610 1134280 .. 1134317 +  -7.6  -2.73364   CGAGCGCGCGGATGT   AGTCGGCGTCGAAGTA CATGGC TTCTTCGTCGCCGGCG    TCCTTGGCCTCGACC  49 504
CXD92_RS05645 NONE
        lolD NONE
CXD92_RS05655 1143157 .. 1143188 +  -4.2  -3.78775   CAGGGCGGCGACGCC      CTGACGCCCGGCCGT CCG GCG-CCGGGCCCCTG      TTTCCTCCTGCCCGC  57 22
CXD92_RS05660 1146756 .. 1146780 + -12.8  -6.34424   TCCGCCCGTTGTTGG          CCGCCTGTCG TGTAT CGACTGGCGG          TTTTTTTTTTGCCGC 100 109
CXD92_RS05665 1147279 .. 1147297 +  -3.8  -3.60762   GTAGGCGAAATCCTC             GTCAAGTC AGC GACTTCGC             CTTTTTTGGCCACTC  51 187
CXD92_RS05670 1151345 .. 1151373 +  -9.4  -2.87132   ACTAAGCGCCGTAAG        ACGGGGGGCGCC GATGG GGCGCCTCCCAC        TGTCTGGCGAGCAGG  56 36
CXD92_RS05680 NONE
CXD92_RS05685 1156026 .. 1156040 +  -2.7  -3.02263   CGGAGCGCGGCGAAG               CCGCG CTACC CGAGG               TCTTGCAGGACCTCT  42 53
CXD92_RS05690 1156931 .. 1156954 +    -8  -3.09015   CGCGCCTTTCGCGCC          GGGCCGTTGG CGCC CCGGCTGCCC           TTGAATCCCTATGCA  54 43
        greB 1157751 .. 1157785 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 241
CXD92_RS05725 1165166 .. 1165184 +  -5.2  -4.42081   CAGGCAGGGAAGCGG             GCCGCAGT AAA ATTGCGGG             TTTTCCCTTTATGTT  72 16
CXD92_RS05735 NONE
        odhB 1171749 .. 1171805 + -12.9  -3.74693   GAAGAATGCCTTCTT CTGTCGCTGCCGCCAAGGGCCGGGCCGC CATC GCGGCCC-GCCC--GGCGGCCCTGCCGG TTTCGTCGAATCCGG  79 58
        lpdA NONE
        zapE 1174651 .. 1174667 +  -3.5  -3.14132   TCGGAAGCCAGGAAG              GCCACCG TGG CGGCGAC              TTCCTCCGGCAGGCC  45 114
CXD92_RS05760 1176489 .. 1176523 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS05795 1182036 .. 1182064 + -19.6  -2.53876   CGGGGCAACGACGCA       GGCGCCGCACCCG ATGA CGGG-GCGGCGCC        TGCGTTGCGATCAGC  93 67
CXD92_RS05805 1186709 .. 1186727 + -11.6  -3.91911   CCGCGCAAAAGGAAA             ACCCGGCC TGG GGCCGGGC             TTTCCTTGGACTGCG  81 44
CXD92_RS05815 NONE
        pgeF NONE
        phaC 1191112 .. 1191131 +  -4.8  -3.61894   CGGTTTGAGTACGCG            CGCGGGCC GCAA GGCCGGCA             TTCTTGGCGGGCGTT  52 33
        phbB 1191928 .. 1191956 +  -9.6  -3.04263   CGCATTCGGAGGGGG       CCGGG-GTCCG GGGGGAAG CGGACGCCCGG        TATTACACGTAAAAT  57 44
        phaR 1192614 .. 1192633 + -16.4  -4.24204   CTGGCTGAAGGAAAA            GGGGCGCC CACG GGCGCCCC             TTTTCCGTATGAGTC 100 52
CXD92_RS05840 NONE
CXD92_RS05845 NONE
CXD92_RS05850 NONE
CXD92_RS05855 1195928 .. 1195942 +    -7  -2.79183   CATCTGGTAGCGCGG               CCACGC GCG GCGCGG               TATGGTGGCGGTCCC  48 31
CXD92_RS05860 1196916 .. 1196926 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS05865 1198020 .. 1198042 + -11.9  -2.50816   GTAGCCCGGCCCATA           GCGCGCCCG CGGTC CCGGCGCGC           CTTCGTCGCTGCCGC  58 115
CXD92_RS05890 NONE
CXD92_RS05895 1203343 .. 1203361 +    -3  -3.58396   GCAGGCATTGCCATA             CGCACTGG GCA CGAGTGGG             ATTTTTAATTTCACG  49 56
CXD92_RS05900 1205029 .. 1205045 +  -6.5  -3.39895   CGCGGAACCAACATG              CCGGC CCACAAA GCCGG              TTCATTGCTACACCG  55 167
CXD92_RS05905 NONE
CXD92_RS05910 NONE
CXD92_RS05920 1209700 .. 1209712 +  -3.3  -3.35679   GGCGAACGGCTCGAC                CACCA GAT TGGGG                TTGTCGATGGGCAGC  47 465
CXD92_RS05930 NONE
CXD92_RS05935 NONE
CXD92_RS05940 1212826 .. 1212861 +    -9  -3.14132   GCACGACGGCCAGCG   CTGAGCCGG-CCGGCG CGCCTA CGCCGGGCCAGC-CAG    TTCGTCGGCCAGCGC  59 22
CXD92_RS05950 1215172 .. 1215189 +  -5.5  -3.34398   AGACGCTGCCTGTAA             GCCGC CGACCGTT GCGGC              TATTTGGCCGCGCCG  51 86
CXD92_RS05965 1217764 .. 1217804 + -16.2  -2.71011   TATTGACAGTTCACA  GCTAGCGCGGCGCTAT CCGCATACC ATAGCGCCGCGCCGGC  TCGTTGCCAAGGCAT  77 21
CXD92_RS06010 1225647 .. 1225693 +  -5.1  -2.97188   GCTCGCGCGCATCCC TGGCG-GATGCGCGGGC-CGG ACCGGCC TCGAGCCTGCGTGGCGCGCCA TGTCTCGTCCTGTCC  47 111
CXD92_RS06015 1226583 .. 1226629 +  -5.1  -3.29461   GGATCGGCGCGGCCG CCCT-GGATGCG-CAGGCATAGC GCC GCGGCGCATGGCGTATCCTAGGG TTATGCAAAGACTTC  51 6
CXD92_RS06020 1226880 .. 1226921 +  -4.3  -4.08216   TGCTCGGCCAACGGG CCG-CTGGGCAGGGTGCCGT CTT GCGACATCATGGTCAGCCGG TTTTCGCCGACCTGG  60 73
CXD92_RS06030 NONE
CXD92_RS06035 1228926 .. 1228966 +  -6.6  -2.78596   CCGGGCTACCATAGG CGCAGCCATCCGGCGGCCG CCAT CGGCCGCCCGGCG-CACCG  TATCGTCACGAGGTA  47 111
CXD92_RS06040 NONE
CXD92_RS06045 1229566 .. 1229589 +    -3  -4.07568   CTGACCTTCTGCGCC          GCGCCGGC GATGGTAA GCTGGCTC           TTTTCCGCGCGGCCG  59 37
CXD92_RS06050 NONE
CXD92_RS06055 1230811 .. 1230840 +  -7.7  -3.21395   GCCCCCGCGCCAGCC       GC-GTGGCGCCTTG CGC CTCGGCGCCGCAGC       TCTTGTCCAGCAGCT  53 277
        clpB 1235451 .. 1235474 + -13.2  -5.48063   CGCCGCGTCTCTCAA          CCCCTGGATCC AAT GGA-CCAGGGG          TTTTTTCTGTTCGCT 100 69
CXD92_RS06080 1237212 .. 1237241 +  -4.9  -3.05384   CGGCGATCGCGTGAT       CAGC-GGGATCCTG CAG CAGGACCTCGGCAG       TTGGCTGGCGCCGGA  45 123
CXD92_RS06090 1241291 .. 1241324 +   -11  -2.68942   GCTTGAGGGTGTCGA     CGCGATGC-CCGCGC ACCAG GCGCGGCGTATCGGG     GTTCTGTCCGGCGCT  59 388
CXD92_RS06100 NONE
CXD92_RS06105 NONE
CXD92_RS06110 1244468 .. 1244500 +  -9.7  -3.05463   GTCAGGCGCGGCTGT      TGCGGCCGGCGGG GCGGCAG CCCGCCGGCAGGG      TTGCCTGCCGCACAT  57 47
CXD92_RS06120 1246952 .. 1246973 +  -8.6  -5.47218   GGCCAGGTGCTGCGC           GCCGGCGC CTGAGC GCGCCTGC            TTTTTTTCCCTACGC 100 14
CXD92_RS06125 1248322 .. 1248337 +  -7.5  -3.14132   GTTGCGCCCGTGGCC              GGCGC TGCGGC GCGCC               TTGATGAGGGCGCGC  53 377
CXD92_RS06155 NONE
CXD92_RS06160 1254311 .. 1254322 +  -7.2  -4.15565   ACATGTTTCGTGGGC                CCGC CTGG GCGG                 TTTTACGGTACTCAA  67 77
CXD92_RS06165 NONE
        crcB 1255282 .. 1255324 + -13.2   -3.6502   GGCTGGGGCTGGCGA CCGTGCGCCTGCTGTTGCGC TGA GCCCGGCGGCGGGCGCCAGG TTTCAGTCCGGCGTG  79 3
         alr 1259620 .. 1259643 +    -8  -2.56596   GAGCATTGTGCGGAT          CGCCGGCGGG CCGG CCTGCTGGCA           TGAATTGCTACGCAA  50 39
CXD92_RS06195 1260664 .. 1260686 +  -5.5  -4.45399   AGGCCGGATCGTCAC          GCTGGC-GCG CTGA CGCCGCCAGA           TTTTCCTGTTGCTGT  72 215
CXD92_RS06205 1262424 .. 1262470 + -12.9  -2.73875   GCTCGATGGCCAGTT GCAGCCGGCGGCGCTGCTG GAACTCGGA TAGCCGCGCCTCGGGCTGC TCGTGTTCGGCGGCG  63 213
        radA 1266101 .. 1266111 +  -4.6  -3.13299   CGTTGATGGCACGTC                 CGGG GAG CCTG                 TCTTGAGTCTGCTGG  47 35
CXD92_RS06225 1266981 .. 1267001 +  -6.7  -3.58905   CAACGAATTATAGGT            CACGCGGCA TTT TGCCGCGCC            TTGTATGTGCGGGCT  58 119
CXD92_RS06230 1267543 .. 1267564 +  -2.1  -3.53012   CATCCTCCCAGCAGG           CCGACGCCGC CCA GCGCCA-CGG           TTTGCAGCACCAGCG  47 295
CXD92_RS06265 NONE
CXD92_RS06270 NONE
        maiA 1275521 .. 1275542 + -17.3  -5.67063   GCGCCCAAGCAAAAA           GGGCAGCCC GGAT GGGCTGCCC            TTTTTTTCTGGTGCC 100 45
CXD92_RS06285 1275926 .. 1275947 + -12.3  -5.09762   CGTCGACACAAAAGG           GCCGTTCAC GCAA GTGAGCGGC            TTTTTGTATTGCGCT 100 77
CXD92_RS06295 1277931 .. 1277951 +  -6.7  -4.14392   TGGGCGACGATCACG            GTCACGGGC GCG GCCAGTGTC            TTTTCCAGGTTGCCG  69 417
CXD92_RS06305 1279264 .. 1279290 + -12.2  -3.85698   ATCAAGACATTACAG         CCGGCCTGGCGT GCG ACGCCAAACCGG         TTTGTCCGGGCGGCC  81 92
        scpB NONE
CXD92_RS06320 1283449 .. 1283468 +  -9.3     -6.13   GGCCAGGCAATACGG            TGGGCTG GGCGTG CAGCCCA             TTTTTTTTTGAGTGT 100 453
        rimP NONE
        nusA NONE
CXD92_RS06335 NONE
        rbfA 1288949 .. 1288978 +    -5  -2.60341   TGTTCCCGACGAGCC       CGAAGACCAGTCC TGACC GGGCTG-TCGTCG       CTGCTTTTTCTCCTT  42 10
        truB NONE
        typA 1291621 .. 1291647 + -22.4  -4.65895   GCGGTGCCAGCGCAA         GGGTTGTGGCCG TGG CGGCCACAACCC         TTTTTACATGCAGCC 100 66
        polA 1296332 .. 1296357 + -17.5  -2.69151   GCGCACTGATGCGGC         CCCGGCCGGCG TCCG CGCCGGCCGGA          TACTGTCTGACAGCC  80 32
CXD92_RS06375 NONE
CXD92_RS06380 1298123 .. 1298148 + -21.9  -2.52676   ACCTGTAGCGGGCCG         GGGCCTGCCCG TGCT CGGGCAGGCCC          TCAGTTGCCCGCGTC 100 33
CXD92_RS06390 1301461 .. 1301512 +  -7.2   -4.8048   ACAGGCACGCCGGGG TTGGAGTTTGCGGGTGCCAGTCCCC TGC GGGGACAGGCACCCG-GGGTTAGAG TTTTTCCTCTACCCC  84 117
CXD92_RS06420 NONE
CXD92_RS06425 NONE
        parC 1315668 .. 1315683 +  -8.2  -3.22475   GTGCGTCCCAGGCAG              CCGGTG CTGT CGCCGG               TGTTCTGAGCGTGAA  58 2
CXD92_RS06435 1317074 .. 1317108 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS06460 1320730 .. 1320758 +  -8.7  -3.29144   TGACCAGCAGGTTGG        CGCCCGTGTCGTG CAG CACCACCCGGCCG        TTCTCCAGCACGTAG  59 157
        ugpB 1329903 .. 1329933 + -21.1  -3.18118   TTGGCCTGTGCCTGT       AGCGGCCGGCCGG CATTA CCGGCCGGCCGCC       TGTATTCTCACCTGG 100 145
        ugpA NONE
        ugpE NONE
CXD92_RS06525 1332930 .. 1332963 + -17.3  -3.44325   GCCGCAGCGGGGACA     GGCGCCCGTGCGCGG CGAG CCGCGCGCATGCGCC      TTACTTGTACGACGT  87 102
CXD92_RS06535 1334972 .. 1334982 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS06540 1336152 .. 1336192 +  -3.1  -3.06261   ACAGAAGATGCCCAC CGCGACGCAGGCGATGCCG ACCAG CGGCGAGGCG-GCG-CGCG TGTTCGCGGTTGCGA  42 191
CXD92_RS06555 NONE
CXD92_RS06560 1337805 .. 1337863 +  -2.9  -4.56597   CCCGCGGCAGCCTGA TCCCCTTGCCGGGCGCAGGGCTAC-CGGC CCG GCCGCGCGGCCC-GTGCGGCACAATGGGA TTTTTGGCGCAAGGC  69 76
CXD92_RS06565 1338745 .. 1338777 +  -9.7  -3.06671   GCAGCCCGGGCGCCA      TGGCGGTGCAGCGCG TCA CGCCCAGCATGGCCA      TGTTGCGGTCGATCT  59 67
CXD92_RS06625 1348486 .. 1348514 + -10.1   -2.9348   GACGCGCAGCACGGC        GGCTAGGGCGCGG CGA CCGCGCCACACCC        TATGTAAAATTTACA  59 20
CXD92_RS06630 NONE
        arsC 1350574 .. 1350605 + -24.5  -3.90112   TGAGGGCGAGTGATT      GCGGCCTGGCGCG GCAAGA CGCGCCAGGCCGC       TTTCGTTGACGGCCG 100 70
CXD92_RS06675 1356864 .. 1356895 +   -10  -2.81547   GGGCCAGCGGCAACA      GGCGCTGCGCGGCC TGGC GGTCGTCCAGCGCA       TAGTTGATCTGCAGG  56 306
CXD92_RS06705 NONE
CXD92_RS06710 1362431 .. 1362474 +  -8.3  -2.51133   CTGCACGTGATGCAG GCGGTCGAGG--CGCAG-TCCA GCG TGGAGCTGCTCACCTCGATCGC GTTCGTGGATGACTC  51 258
CXD92_RS06755 1382374 .. 1382431 +  -7.7  -3.07113   CTGTCGTCCACATAG CGCAG-CGCGG-C-GGGCGCCGCGGGGCT CACG AGCGGCGC-GCGCCCTGGCCCCGGTTGCG TTGGCTGGACTGATC  53 66
CXD92_RS06780 1386765 .. 1386788 +  -8.8  -3.53012   CGGCGAACAGCCGCC          GCAGCTGGCGC CCT GCGCCATC-GC          TTTGCGGCGCCGGGC  61 350
CXD92_RS06805 1389830 .. 1389862 + -12.7  -2.73875   CGCCTGGCGCGGCGC     GGCCGGTCCTGCCC GAACTG GGGCCGGAC-GGCC      TGGTGTTCGCCGAGG  65 244
CXD92_RS06815 1393427 .. 1393459 + -10.5  -3.05963   TGTCGACCGTGCCCA     CGC-GCGCGCCGTC GGGCAG GGCGGCGCGCAGGG      TATTGACCTGCACGT  59 285
CXD92_RS06830 NONE
CXD92_RS06835 1399378 .. 1399393 +  -4.6  -3.41051   GAGATCGGCAATGGC              CTGGTG GAAG CGCCGG               TTCTCGTCGAAGTAG  52 291
CXD92_RS06845 NONE
CXD92_RS06850 NONE
CXD92_RS06855 1403866 .. 1403878 +  -3.3  -2.64243   AGCCCCGCAGGAGCC                GCGTC CAT GAAGC                TGCTGTCGCATATCC  39 16
CXD92_RS06860 NONE
CXD92_RS06865 1406426 .. 1406450 + -13.5  -3.21416   CGGCGGGCCGACGGC          GGTCAGGCTGG CGT CCAGCCCGGCC          TTGCTCATGGCGCTG  72 427
CXD92_RS06885 NONE
CXD92_RS06890 NONE
CXD92_RS06895 1412397 .. 1412433 +  -9.4  -3.02511   GAAGTAGCCCGTCGC   CGG-CGCTGGCTGTCCC TGCG GGGACAGATACCGTCCG    TCTTGGCCGGCTACC  57 34
        flhB 1418692 .. 1418731 +  -3.5  -3.67296   GGTGATGATCCTGCT  GGTGGCGATGTTCACGCG CAAGC CGC-TGGATTTCGCCGCG  TTTCCCTCGGTGCTG  54 199
        flgB NONE
        flgC NONE
        flgD NONE
CXD92_RS06970 NONE
CXD92_RS06975 1428721 .. 1428751 +  -2.2  -4.32034   CGGCCAGCTGATTAT       CAACGCGCGCGCCG AAG CGCCGCGCCAGGAG       TTTTCATCATGATGC  65 30
        flgG NONE
CXD92_RS06985 NONE
        flgI NONE
        flgJ NONE
        flgK NONE
        flgL 1435724 .. 1435749 +   -14  -3.05384   GTAGTCGGGAAATGG         CGCGCGCTCC CCTCGA GGAGCGCGTG          TTCGATGGAAAGCGG  72 57
CXD92_RS07010 1437615 .. 1437626 +  -2.2  -3.68853   GGGCGAAATGGCGGC                CGGA TAGT TCTG                 TTTGGCGGTTTTTGC  51 49
CXD92_RS07015 1439398 .. 1439433 + -22.6  -4.56597   CCAGGACGGGAAAGC    GGCGATCCGCCGCGGC CAGC GCCGCGCCGGATCGTC     TTTTTACAGGCAGCG 100 92
CXD92_RS07020 1440974 .. 1440989 +  -4.6  -3.78419   CGTCGGGTGCCGTCG              GGTGCC GCTG GGTGCC               TTGTATCTTTCCTCC  58 47
CXD92_RS07025 1442205 .. 1442231 +  -2.9  -3.90744   CAAGACGGTATCTGT        CCCC-GCGGG GACAGGCA CCCGAAGGGG         TTATTTGCCCGCCAG  58 45
        fliE 1455557 .. 1455578 +  -7.2  -2.88544   CCAGCAGCTCGGCCA           CCGCCGTG TAGAGT TGCGGCGG            TATATGGGCATCCAG  50 518
CXD92_RS07150 NONE
CXD92_RS07155 1462253 .. 1462269 +  -3.5  -3.31415   GACAACGGTTTCATC              GCCGCAC AGT GACCGGC              TTCGATTTCGTCGTC  47 14
CXD92_RS07160 NONE
CXD92_RS07165 NONE
        rpsB NONE
CXD92_RS07195 1471636 .. 1471670 + -13.5  -3.83144   ACGCGTCATCGTAGG    GGCCGGCCAGGGCGGG GCTT CCCGAACT-GCCGGCC     TATTTCTTGTCTTAC  83 40
CXD92_RS07200 NONE
CXD92_RS07205 1473011 .. 1473062 + -10.8  -3.10344   ATCATGACCGTATAA TTCCGGTTGAGGTATCGGGGCCGT ATCG ACGGCTCCGGTGTCGATATCGGAA TCTGTTCCGTACGCG  64 26
        uppS NONE
CXD92_RS07215 NONE
CXD92_RS07220 1476000 .. 1476028 + -10.1  -3.59979   TCATTCGCCGGCAAT        CTCGGCCTGGCGT GAC GCGCCGGGCCGCC        TTTCGCGTCCACCCG  67 11
        rseP NONE
        bamA 1479817 .. 1479850 +  -2.9  -3.72893   GTTACGCATGAAAAC     ATGGGAAATGGCCGG TTGC CCGGCCGTCCCGCAG      TTTAGTGGCACAATA  53 65
CXD92_RS07235 1480470 .. 1480480 +  -2.4  -2.64218   CTGGGCCGATAAGCA                 CGCC CAT GCCG                 GTTCTGCTGGACCCT  38 29
        lpxD NONE
        fabZ NONE
CXD92_RS07250 NONE
CXD92_RS07255 NONE
CXD92_RS07260 NONE
CXD92_RS07265 NONE
CXD92_RS07275 1488813 .. 1488833 +   -14  -5.40072   CGGCAGCAGGAAAAA            GCCTCGCC CTTGC GGCGAGGC            TTTTTTTCGCCGGGC 100 46
CXD92_RS07285 1490139 .. 1490158 + -10.6  -3.09015   CGTAACCATGACCTT            GCCCGCCG GCGA CGGCAGGC             TTCACTAGCTGTGAA  64 36
CXD92_RS07295 1492168 .. 1492191 + -17.4  -3.59979   CGTGAGGTTCGACCC          GGGCGCGCCG GCCG CGGCGCGTCC           TTTCGCGTCCGCGCC  89 36
CXD92_RS07300 1493385 .. 1493405 +  -9.7  -3.67622   GCGCTGGTTGACGCG            CGTGTCGTG CTT CAGGACACG            TTCCTTTTCGCGCTG  68 30
CXD92_RS07310 NONE
CXD92_RS07315 NONE
CXD92_RS07320 1495821 .. 1495834 +  -2.4  -2.62616   CTCGCCAACGACTTA               CGTT TACGTT AACG                TCATGTCGAGCGTCC  38 129
CXD92_RS07325 NONE
CXD92_RS07330 NONE
        mmsB 1499203 .. 1499219 +  -4.3  -3.08464   GGCCGGGCGGCCAGG              GCCATTC CGC GAGAGGC              TTGCATGCCTGATAC  47 50
CXD92_RS07340 1499648 .. 1499675 +  -6.8  -2.90075   TGACCGCGGTGCGGG        TGACGCCGCGTT GAAC GGCGCGGCGGCC         TATACTTGGCGCGCC  50 12
CXD92_RS07345 1500589 .. 1500623 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 204
CXD92_RS07370 NONE
CXD92_RS07375 1508136 .. 1508163 + -14.2  -6.15828   GCCTCGAACGTCCGC        CCCATCCACGGCG CCA TGCCG-GGATGGG        TTTTTTTTTGGTGCC 100 47
CXD92_RS07405 1514774 .. 1514784 +  -4.6  -3.07113   ACTCGCGAATAGGGG                 GCTC AGT GGGC                 TTGGATGACCTGGTG  45 156
CXD92_RS07410 1515085 .. 1515095 +  -2.6  -3.57144   CAGCGCTTGCAGATG                 TAAT CCG ATTA                 TTTCCAGGTGGCGCG  48 23
CXD92_RS07415 1516157 .. 1516176 +   -10  -4.07568   CGGCAGTGTCATAAT            CGGGGTTG ACCG TAACCCCG             TTTTCGCGCGAAGCC  78 27
CXD92_RS07420 NONE
CXD92_RS07425 1518127 .. 1518175 +  -8.6  -2.62184   GCCAGGCCGCCAAAT AGGCCGCGCGTTCAGGCCGGGCT GACG GGCGCGGCCAG-GCGCGCGATCG TGGTGTCCAGCGGCC  52 24
        apbC NONE
CXD92_RS07450 NONE
CXD92_RS07455 NONE
CXD92_RS07460 NONE
CXD92_RS07465 1525873 .. 1525890 +  -8.4  -3.29829   TGCTGCATGCGGGCA             CCGCAC CATGGC GTGCGG              TTGTCGGAAGCTATA  58 88
CXD92_RS07470 1526172 .. 1526186 +  -5.6  -3.13403   ACCACCCTCGTTTGA               TACCGG AGC CCGGCA               TGTTGCTGACCAAGA  49 26
CXD92_RS07475 1529652 .. 1529674 +  -3.2  -3.01712   GGCGCTGCTGGCCGG           CGACGGCGAC GTG GTGGCCGACA           TCTTCCGCACCCGCG  42 522
CXD92_RS07485 NONE
CXD92_RS07490 NONE
CXD92_RS07495 1531598 .. 1531648 + -10.2  -3.61398   GCCAGTAGCCCGGGC GGCAAGCCGCGCGGCGTCCGGCC GCCTCA GGCCGGGCGC-GTGCGCCGGACC TTCTTGCGCGCGAAA  67 33
CXD92_RS07510 NONE
CXD92_RS07515 1535254 .. 1535274 + -16.9  -4.07687   AGCACGAAATCCAAA            GGCCACGAG ACA CTCGTGGCC            TTTTGCACGGGGCGT 100 121
        leuC NONE
        leuD 1537523 .. 1537559 + -18.6  -3.37556   TGACGCGTTGCCTGC    CGGCCCGCCGTCCGCG TTGAT CGCGCGCGGCGGGCCC    TTGCCTTGTTTTCCC  93 38
        leuB 1538716 .. 1538732 + -10.1  -4.58685   CCACTGTGCGCAAGG              GCCGCGA TTT TTGCGGC              TTTTTCGCACAATTT  93 73
         asd 1539996 .. 1540052 + -11.8  -4.07568   CCTGACGCGCGGCGC CGGCGCGCATGGCAGGATACAAGGGCGCC CGCG GGCGCCCTTG--T-C-GC-AGGCGCGCCG TTTTCGACGGCAAGG  82 36
CXD92_RS07540 NONE
        truA 1542660 .. 1542672 +  -4.7  -3.61398   TTTACGCAAACGGTC                CGCGC TCA GCGCA                TTCTTCCACACCCAG  52 130
CXD92_RS07550 1543783 .. 1543799 +  -6.5  -3.53012   ATGGCGACGGTGGCG              CGGGG CAAATAA CCCCG              TTTCGACGCGACGCG  56 14
CXD92_RS07555 NONE
CXD92_RS07560 NONE
CXD92_RS07565 NONE
CXD92_RS07570 1547124 .. 1547144 + -15.5   -5.1101   TATCGAAACGGAAAA            CGCCAAGTC GCT GACTTGGCG            TTTTTTGCCTGATCG 100 62
CXD92_RS07575 NONE
        yaaA 1549207 .. 1549244 +  -3.4  -4.21812   CGCAAGCAGGCCTGA  CAGGACG-CGCG-ATGTC GGCA GGCTTACGCGTCTTCCTG   TTCTTTTCGCTCGGC  63 26
CXD92_RS07585 1550928 .. 1550942 +    -7  -3.72576   CGGCGTCGGCGCGCT               CGCCGG TCT CGGGCG               TTTCCTCGCCCGCCG  61 494
CXD92_RS07595 NONE
CXD92_RS07600 1554486 .. 1554520 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
        thrS NONE
CXD92_RS07630 1559774 .. 1559810 + -19.3  -3.05463   CAGGCTGATCCCATC    CCCGGCCCGGTTGCCCT CGA GGGGCGTCCGGGCCGGC    TTGCGTGCGGCCCGT 100 33
CXD92_RS07635 1560866 .. 1560879 +  -3.1  -2.87243   GCCGGCTGAACTTGC               TGCTA TGAC TGGCA                TCGTTATCGTCGTGC  41 32
CXD92_RS07640 NONE
CXD92_RS07645 1561670 .. 1561696 + -10.8  -2.62735   AAAACCTCAGGTTCC         GGCAGCCCGC CGTCGGC GCGGGCTGCA         TCGTCTACGCGCTCT  59 42
        ptsP 1563491 .. 1563508 + -10.5  -5.64006   GGTGGCACGGCAAAA             CGGTGCC TTGC GGCGCCG              TTTTTTTCGTTGCAT 100 47
CXD92_RS07665 NONE
CXD92_RS07670 1566656 .. 1566674 +   -16  -5.31275   GGGCGCGGCAATGCG             GGCAGGCC TTG GGCCTGCC             TTTTTTGTCGTCAAA 100 72
        ehuB NONE
        ehuC NONE
        ehuD NONE
CXD92_RS07690 1569814 .. 1569824 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS07695 1571068 .. 1571108 +  -5.9  -3.29144   CGGGGCGGCCCTCGG  GATGCCGCGGGAGGTCATC CGT GATGTCGTGCCACGGCGCC  TTGTGGGCGACGTAG  53 265
CXD92_RS07730 1577002 .. 1577017 +  -7.5  -2.71011   GCGGAACAGGGACCG              GCGCG CCGTCC CGCGC               TGATTGCGAAGGGAT  51 7
CXD92_RS07735 1578268 .. 1578287 +   -15  -5.15634   CGCCCGCATGGAAAA            CCGGACGC GCGA GCGTCCGG             TTTTTTCATGGCCTC 100 72
CXD92_RS07745 1579879 .. 1579905 + -17.3  -5.26875   GCCGGCGCCGTCCAG        GCCCGC-CGCCC TTCG GGGCGCGCGGGC         TTTTTTCATTGGAGG 100 46
CXD92_RS07750 NONE
CXD92_RS07755 NONE
CXD92_RS07760 1580814 .. 1580832 +  -4.4  -2.77523   CCGTGCCCTTGCCGC             TGGCGCTC TGA GTCCGCCA             TGATCTTCCTGCGCA  43 15
CXD92_RS07765 1581415 .. 1581432 +  -9.1  -3.41836   AAAATAGCCGATTCG             CGGC-CGC CTG GCGGGCCG             TCTTTCCATCCCTAT  63 129
        purE NONE
CXD92_RS07775 1583158 .. 1583172 +  -3.4  -2.60075   GCGCTGGGCATGGCC               GCGCCG CTC TGACGC               ATTGATTCCCGCCGC  39 14
CXD92_RS07780 1584257 .. 1584273 +  -7.2  -2.62184   AACTCCTGATTGCCG              CGCCTG CCGGC CGGGCG              TAATCTCACGCGGAC  47 56
CXD92_RS07785 1585397 .. 1585434 + -10.5  -3.06162   CTAGGGCGAGGGCGG   CGGGGCGGGCAAGATCGC CAA GCGATAC-GCCTGTCCCG   TATTGCGGTACGCTA  60 37
CXD92_RS07790 1586338 .. 1586356 +  -5.9  -3.62518   GTATTTGATGGGAGA             GCAAGGG GAATA CCCTAGC             TTTCCGGATCTTTCG  59 50
CXD92_RS07795 NONE
CXD92_RS07800 NONE
CXD92_RS07805 NONE
CXD92_RS07810 1589726 .. 1589749 + -19.6  -2.75064   TGGGTTGAGCCCGGC          CTGCCGCGCG CGCC CGCGCGGCAG           TGGTTCCATGGCCGG  93 33
CXD92_RS07815 1591436 .. 1591466 +    -9  -3.89956   CCGGCACGCCGGGCG      CGATGCCGC-CGCG CAACA CGCGGGCGGCG-CG      TTTGGTCTATCCTGC  73 55
CXD92_RS07820 1592080 .. 1592119 + -12.1  -3.73072   GCACGCGGGGAAGTT  TGCCG-GTGCCAGTCCCC CTTGC GGGGACAGGCACGCGGGG  TTTAGTAGAAGGCTT  77 122
CXD92_RS07835 NONE
        xerD NONE
        ybaK 1597680 .. 1597702 +  -9.1  -2.94144   TCGTCGCATGACCAG          GCCGGCGCGT TACG GCG-GCCGGC           TCCTTTCCATGGAGA  56 100
CXD92_RS07850 1598310 .. 1598338 +  -5.2  -2.59564   GCACTGACCCCAATA       CGGGCTGTACGGCC GCC GGCCG-GC-GCGCG       CTTGTCGCCTGCCGG  44 34
CXD92_RS07855 1598810 .. 1598820 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS07860 1600284 .. 1600302 +    -3  -4.07885   CGGATAGTTGCGGCC             CAGCGC GTGGGCG GCGCGG             TTTTCCGAGGACATC  58 485
CXD92_RS07875 1602994 .. 1603008 +  -9.2  -3.28712   AACTGGGAAAACATC               GCCGCG CTG TGCGGC               TTCTAGGCCGCGCGC  61 187
CXD92_RS07880 NONE
CXD92_RS07885 1609609 .. 1609667 + -24.1  -2.71731   TGATGGGTCCGGTCG -G-GCCGGGGCTCGCCAGCTACGCATTCT GTT AGAATGCGTAGCTGGCGGGCCCCTTCGCA TGGTTCGGCGGTGAA 100 521
         ffs 1609778 .. 1609813 + -10.7  -2.70932   AGGGGCGCCGTGACC   GGAATGTATCGCGATCC AGGC GGATCGC-AT-CATTCC    TGGTTGCGGCGCCCC  60 54
CXD92_RS07895 NONE
CXD92_RS07900 1612382 .. 1612416 + -13.5   -2.6927   GCTGCCGTTCTGATA    TCGC-CTTGGCGGCCC AGCC GGGCCGCCGGGCGCGC     TGCTGTCTGCGCGAT  67 28
        recR 1613073 .. 1613083 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS07910 1614276 .. 1614305 +  -2.7  -4.13767   CGCCGTCCTCGAGTA       TGACC-AGGCGGGC GTT GCGCGCATCGGCCA       TTTTCACATCCGACA  61 214
CXD92_RS07930 1617324 .. 1617358 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS07970 1624992 .. 1625044 +   -11  -3.28791   CGCGCAGGCATGCTG CGCCGCGCGGCCATCCGGCGGGGCC GCAA GGCGCCGCCGGGCA-CCGCCCGATG TTATCCCCGGCAAAT  66 298
        mutS NONE
CXD92_RS07985 1629921 .. 1629942 + -15.9   -4.4078   GGGCAGGCATGCTAA           TGGCCTCCG GTAA CGGAGGCCA            TTTTCATTGCGCGAA 100 520
CXD92_RS07990 1630723 .. 1630746 + -18.2  -5.40474   CCAGGCCAAAAAAAA          CCGGCAAGCC TTGC GGCTTGCCGG           TTTTTTTGCGCCGCT 100 50
CXD92_RS08010 NONE
        glnH NONE
        glnP NONE
        glnQ 1637201 .. 1637222 +  -8.8  -3.05844   GTGGAAACCGCGTCG           TCGTGCAT CGTGAC ATGCACGA            TATTGGCGTCGGCCG  55 165
CXD92_RS08055 1643023 .. 1643034 +  -4.4  -3.35679   GTTCGTGGGACGCGG                CTGA GGTT TCAG                 TTCTCGCTGGCGGCC  51 22
CXD92_RS08065 1645781 .. 1645791 +  -3.2  -3.89614   TTACGCTCGGCTTTG                 GTCA GAT TGGC                 TTTGTCGCCCTTGGC  58 441
CXD92_RS08090 1648544 .. 1648570 + -12.2  -3.05384   GCGCAGCGCCGCCAC         CTCGGCGTCGCC CGG GGCGGCGTCGAA         TTCGGTGAGGCCGGC  66 492
CXD92_RS08100 1650821 .. 1650837 +  -6.5   -4.8083   AACTTGCGGCCGCGC              TGTCGGC CAC GCTGGCA              TTTTTCGTGCTGTTG  82 139
        rdgB 1654964 .. 1654974 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS08120 NONE
CXD92_RS08125 1657328 .. 1657350 +  -7.6  -4.16842   CCAGGAGTGCGGGAC           CTGGCACGCA TTT TGCTTGCCTG           TTTATTGCCAGTCGG  74 133
        glnA 1658820 .. 1658872 + -22.1  -3.11634   ACTACAGCCTGTAAT CCGGGAGGCTGTGCGGCG-GCGGGCC TCGC GGCCCGCCCGCCGCGC--CGTCCCGG TTGCCTCCTATGACG 100 27
CXD92_RS08135 NONE
        ntrC NONE
CXD92_RS08150 1663256 .. 1663278 + -11.9  -4.56597   TGCCGTAAAGTGAGA           CGGGCGCCG CCAGC CGGCGCCCA           TTTTTCCACGGCGCG 100 33
CXD92_RS08155 1664420 .. 1664454 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 214
CXD92_RS08180 1670063 .. 1670076 +  -9.5  -5.27335   CGCCGCCAGGAAAAG               CCGCC TTCG GGCGG                TTTTTCTTTGGCCGC 100 48
        dkgB 1673557 .. 1673574 +  -2.6  -3.65351   GAGGGGTGGGCGTAT             TGCTGG ACAAGA CCGGCG              TTTCGCTGACGCTGG  51 478
CXD92_RS08205 NONE
        recG NONE
CXD92_RS08215 1679328 .. 1679354 +  -9.4  -3.14132   GGCCGGCGTGGCGAA        GCCC-GGCCGG AAATGC TCGGCCAGGGC         TTGCTCGACCACGCG  59 58
        mmsA 1681866 .. 1681895 + -18.6  -2.67316   GTTCGGGCTGAGCGC       GCGCCGGCGCGGC CGGGC GCCGCGCCGG-GC       TGCCTTGTTGCGTTC  87 30
CXD92_RS08230 1682482 .. 1682503 + -15.9   -5.4505   GCGCGCAGAAGAAAA           GCCGGCATC GAGA GATGCCGGC            TTTTTTCTTGCCGGG 100 47
CXD92_RS08255 NONE
CXD92_RS08260 NONE
CXD92_RS08265 NONE
CXD92_RS08270 NONE
CXD92_RS08275 NONE
CXD92_RS08280 NONE
        tviB NONE
        tviC 1697806 .. 1697856 +  -2.7  -3.07816   GCCGCCATGCCCTGG TACACGCAATTCCTG-CG-ATGA TCGAGCT TCATTCGTCAGGCATCGCGCGTA TTCCGTACCTGACGG  42 5
CXD92_RS08295 1699891 .. 1699909 +  -5.2  -3.13403   GATGAGCCGGAGCAT             GGCATGAG CGC CTCGTTCC             TGTTCCTGCAGGGCG  49 36
CXD92_RS08300 1701087 .. 1701097 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 43
CXD92_RS08305 NONE
CXD92_RS08310 NONE
CXD92_RS08315 1704648 .. 1704682 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS08380 NONE
CXD92_RS08385 1718036 .. 1718072 + -11.4  -3.01712   TATGCGCCCGATGCC    GTCGTGCGGGCGCTGG ACGCG CCGGCGCTGGCGCGCC    TGTTCGCGGCCAGCG  65 427
CXD92_RS08395 NONE
CXD92_RS08400 NONE
CXD92_RS08405 NONE
CXD92_RS08410 NONE
CXD92_RS08415 1724685 .. 1724711 + -22.3  -3.05384   GGCAAGTAGGCGCGG         GCGGGCGCGGG CGGGC CCCGCGCCCGC         TTGCGTCGCGCACGC 100 32
CXD92_RS08430 1727399 .. 1727446 +  -5.4  -2.73468   ACGGCGATGACCGCG TGCGCGGGCTC-CAGCCGGGT GCTCACG GTCAGGCGGCGCGCTCGCGCA TGCTTGAGGATATTG  43 191
CXD92_RS08445 1733214 .. 1733234 +  -8.2  -3.34895   CGATGGCGGCATCTT            GCCTTGGC GAATG GCCACGGC            TTGCTTCAGGCTGGC  59 267
CXD92_RS08465 1735340 .. 1735378 + -10.1  -3.65351   GAACCGGTCTGAGCG  CCGGGGCGGCGGCG-CCC GCAT GGACCGCCGCCGTCGCGA   TTTCCATGACGGTGC  67 29
CXD92_RS08495 NONE
CXD92_RS08500 1742036 .. 1742053 +  -6.3  -2.62184   GCGCCGTGCTCGACA             TCAACGGC GGC GCCG-TGA             TGCTCTGACACGCCA  46 0
CXD92_RS08505 1743463 .. 1743477 + -12.8  -4.15044   GTCGCACTGCGCCAG               CCGGGC GTA GCCCGG               TTTCTTCAGGCGCGC  86 383
CXD92_RS08515 1745407 .. 1745422 +  -5.4  -3.67597   CAGTCGGTGCCGGCC              GG-CCTG CCG CAGGGCC              TTGTTCCCTGGGAGC  57 286
CXD92_RS08525 1747142 .. 1747176 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS08565 NONE
CXD92_RS08570 1754705 .. 1754717 +  -4.8  -3.01712   CAGTACGATATCGTG                CTGG CGCGC CCAG                TCTTCCACCCCCGCG  46 363
CXD92_RS08580 1755727 .. 1755737 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS08585 1757214 .. 1757269 + -11.7  -4.07568   CCAGCGTATAGCCGT CCGGGGTGGCCTTGGCCAGCGCG-TCG GCGC CGATCGCGCCG-CCGCCGCCGCCGCGG TTTTCCACCACGACC  82 498
CXD92_RS08595 1760826 .. 1760839 +  -2.3  -3.01918   CGCAAACCGGGAGTC               CTGCC TGAT GGAAG                TCGTTTATGCCCTGG  41 18
CXD92_RS08600 NONE
CXD92_RS08605 NONE
CXD92_RS08610 NONE
CXD92_RS08615 NONE
CXD92_RS08620 1763974 .. 1763984 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 117
CXD92_RS08625 1765021 .. 1765046 +  -8.2  -2.70932   TATGGTAGAAAGGTC         AGCGGCAGGCC ATGAC GGCC-GCCGCC         TACTTCAAGGAGCGA  52 58
CXD92_RS08630 1765639 .. 1765654 +  -4.6  -2.84454   CGCATTCAGGCAAAA              TGTCGG CTGT CCGACC               CTTTAAGTCCTTTAT  44 90
CXD92_RS08635 NONE
        tadA NONE
CXD92_RS08645 1768019 .. 1768065 +    -7  -4.56597   AGCACACCCACTGAA CGCAGGCCCCGCTACGTGTCCT GCC GGGGCACCCAGGCGGGCTGGCG TTTTTCCAGGAAAGA  77 27
CXD92_RS08670 1774631 .. 1774674 + -12.2  -3.28924   GGCATCGAGGCGTAA GCGGGGCGCCCGC-GCGCGGC CTG GCCGCGCCGCCCGCGGCATGC TTATAACGACAGGTA  71 26
CXD92_RS08675 1775594 .. 1775617 + -17.4  -2.61695   TCATACCGATACCGT          GTCGCGGGCC CGCC GGCCCGCGGC           CTATTTGCCGATCCC  80 57
CXD92_RS08680 NONE
CXD92_RS08685 1777420 .. 1777442 + -11.9  -3.15544   AATACGTCTGAACCA           CGCGCGGGC CTGGC GCCCGCGCC           TTCATCGCCATGACC  66 30
CXD92_RS08695 1779789 .. 1779817 +  -2.9  -3.59738   GCCTTGGCGCGCATG        GCGTCCTTGACCG AGT CGGACAGGCGGGC        TTTGAGCGTATCGTG  50 464
CXD92_RS08705 NONE
CXD92_RS08710 1781686 .. 1781723 + -11.4  -2.67021   GTAGGTCCGGCCGCG  CCGG-CGGCGGCC--AACC TTA GGTTATGGCCGCTGTCCGG  ATTGCTATTTGGCGC  61 37
CXD92_RS08715 1783305 .. 1783315 +  -8.2  -3.06796   GCATCCAGCAGTTCG                 CGGC GCT GCCG                 TTCGATCAGCTCGGG  55 248
        mltG NONE
CXD92_RS08740 1789716 .. 1789735 +  -2.8  -3.16564   GAGCTGGTGGCGCAA            GCGGCATGA GCC TCG-GTCGC            TTCCTGCCCTGGCAG  44 17
        holB 1790778 .. 1790791 +  -9.5  -4.03078   CCTGCCAGTGACGAT               CGGGC CACG GCCCG                TTTCTCCTGTGATCC  75 30
CXD92_RS08750 NONE
CXD92_RS08755 1792549 .. 1792568 +   -15  -5.52384   CTCCACCTGATCACG            TGCCGCCC ACCG GGGCGGCA             TTTTTTTGCTCGGGG 100 94
CXD92_RS08760 1793430 .. 1793447 +  -5.6  -4.67982   GATGTATCCCTGTGG             CCGTAT CCATCC ATACGG              TTTTCTTCACTCCAA  77 39
CXD92_RS08765 1794398 .. 1794413 +  -2.5  -3.90744   CATCTACAACCTGTG              CAGCG TATACC TGCTG               TTCTTTCGCGGCACG  56 189
CXD92_RS08775 1795744 .. 1795800 +  -7.3  -3.65902   GATACGCGCCGCCTG GCCCA-CATCGT--CG-CGCTGGGGCAGG ACG CCGGCGCCGGCGACGCCGCGGTGCTGGGC TTTGCCTGCGATGCC  61 100
CXD92_RS08785 1798139 .. 1798167 + -19.6  -3.04398   CGCATCGGCGTACCA       GGCAGCCGGCCCC GCAA GGGGCCGGC-GCC        GTTTTCAGCGCAGGC 100 68
CXD92_RS08865 NONE
CXD92_RS08870 1813780 .. 1813796 +  -2.9  -3.71645   TTGTATCCTATGGCT              TGGATGG CAT CGGTCCA              TTTCAATATGACGTT  53 98
CXD92_RS08875 1814864 .. 1814888 +  -6.3  -5.24129   GGCCGTCGATTTCGG          GTGAGGGGCCA GCC TGGCCTTGCGC          TTTTTTCTCCAGCGC  93 173
CXD92_RS08890 1830335 .. 1830358 +    -3  -3.40403   GCGGCCTGCCGCCGG          CTCGGCGCAT GGGG ATTCGCAGGG           TTCTCATGCGCCGGC  48 47
CXD92_RS08895 1830886 .. 1830896 +  -3.2  -4.45261   ATGGTCGGCTTGTCA                 CGAG ATT CTTG                 TTTTCCATTTCTTTC  69 85
CXD92_RS08900 NONE
CXD92_RS08905 1834492 .. 1834523 +    -3   -3.9941   GAGCCAGATATTCGC     TGAC-CGC-CGGGC CGCCGT GCCCGCGCGCGTAA      TTTCCTTCTGCGGGG  58 23
CXD92_RS08910 NONE
CXD92_RS08915 1837373 .. 1837388 +  -4.6  -2.78384   GCGAGAACGCGGCCG              CGACGC TACA GCGTCA               TGTGCTGCGGCAGCC  43 46
CXD92_RS08960 1845602 .. 1845630 + -14.6   -3.6106   AATCCATCATGCATC       GGCGCGCG-CCCGC TGG GCGGGGCGCG-GCC       TTTCCCCCTGTTACG  81 40
CXD92_RS08965 1849327 .. 1849384 + -16.2  -2.71712   CGGGCACACCGTCAC GCGC-AAGGCGGGCTGGTCGCGCCGGT CATGC ACCTGCAGGGTCAGCCCGCCATCGCGC ATTTCGAACAAGGCG  77 63
CXD92_RS08980 1852499 .. 1852545 +  -8.6  -4.18018   CCACGCCCAGCGCGC CGCGCAC-CGCGTGGTTGCCC ACCACC GAGTAGCCGCGCGCGCGCGTG TTTTCGATCAGGCGG  75 197
CXD92_RS08990 1854281 .. 1854298 + -12.7  -4.19735   CTCGAGCGTGAAGAA             GACGCCC GCGA GGGCGTC              TTTGCTTTTGGAGCC  91 53
CXD92_RS09000 1856197 .. 1856210 +  -9.5  -2.81966   GGATGCGCGGCCGCG               CGCCG TCAC CGGCG                TGTCATGGCATTTCC  56 85
CXD92_RS09005 NONE
CXD92_RS09010 1858742 .. 1858767 + -19.1  -4.56597   TACGCCAAATGAAAA         GAGCCTGTCCC GACG GGGACAGGCTC          TTTTTCCCGGCGCGG 100 29
CXD92_RS09030 NONE
CXD92_RS09035 NONE
CXD92_RS09040 1864437 .. 1864447 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS09045 NONE
        tilS 1866604 .. 1866626 +    -9  -3.28924   AAAATACTCAGCTTT           GCCCGCCCAG ACC CTATGCGGGC           TTGTCAGCCAGAGTA  61 83
CXD92_RS09055 NONE
CXD92_RS09060 1868100 .. 1868121 + -14.5  -5.45802   GCCAAAGATCAAAAA           GGCCCTTGA GCAA TCAAGGGCC            TTTTTCTTTTGCGGC 100 37
CXD92_RS09070 NONE
CXD92_RS09075 NONE
CXD92_RS09080 NONE
CXD92_RS09085 NONE
CXD92_RS09090 NONE
CXD92_RS09095 NONE
CXD92_RS09100 NONE
CXD92_RS09105 NONE
CXD92_RS09110 NONE
CXD92_RS09115 1877842 .. 1877852 +  -2.4  -2.66316   TTCATTGAGCGTGGA                 CACC GAC GGGG                 TGATGTCGTGCACCA  38 477
CXD92_RS09125 1879967 .. 1880009 +  -8.2  -3.25073   CACAGCGGCGGCTAT CCCGCGCGCCAGGCGCTCG AACAGG CG-GCGCCCGGCCGGCCGG TGTTCCTGTTGCGCC  58 408
CXD92_RS09135 1882044 .. 1882066 + -10.6  -2.70932   TCGCTGTTCGGTGCG           CCATGAGCGT GCG ACCCTCATGG           TGGTTCGCCGCGGCG  60 20
CXD92_RS09140 NONE
CXD92_RS09145 1883957 .. 1883973 +  -5.1  -4.12198   TCCCTTACAGGCGGG              CAGGC CGGCGGC GCCTG              TTTTACAACCTTGTA  64 45
CXD92_RS09150 1884153 .. 1884180 + -18.6  -5.04385   GCAAGCAGTACCGAA        GCGGCTTGAGAA GACA TTCTCAAGCCGC         TTTTTTGCGCCTGTC 100 83
CXD92_RS09195 NONE
CXD92_RS09200 1892813 .. 1892833 +  -4.5  -3.19157   TTGCCGCTGCATGGG            CGGCCCGCT CCA GGCGGCCAG            TTCGTCCGCTTCGTC  47 99
CXD92_RS09225 1899149 .. 1899162 +  -9.5  -3.53091   CCTGTATCGCCGCAC               CCGCC GCCG GGCGG                TTTGAAAAGCCGGCT  64 7
CXD92_RS09230 1899305 .. 1899329 + -17.2  -4.98531   GCGCCAATATGAAAA          GCCGCCATGC CTTGT GCATGGCGGC          TTTTTGCTTTGGGCG 100 35
CXD92_RS09235 1900015 .. 1900034 +    -5  -4.20696   AAAATACTAGGCGAA            TTAAAGCG TCAA CGCTCTAA             TTTTCGGCTTGGTCG  66 43
CXD92_RS09240 NONE
CXD92_RS09245 1902656 .. 1902681 +  -3.3  -3.61517   TGCGGCTACCGCCGC        TGGC-G-CGCC TGAACC GGCGACGGCCA         TTATTCGCGCGAAAT  49 82
CXD92_RS09250 NONE
CXD92_RS09255 1905815 .. 1905829 +  -3.4  -3.96051   GCGCGGCATCATCAA               CGAGGC TAC GCCATG               TTTCATCTGTTCTGT  58 131
CXD92_RS09260 1906861 .. 1906889 + -15.2  -3.53012   GGGCGCAACCATCCC        GCTTGCCCGGCC CCGGC GGCCGGGCGCGC        TTTCCGGAGCAGGCG  81 41
CXD92_RS09265 NONE
CXD92_RS09270 1908961 .. 1909009 + -18.2  -2.90075   GGTGCTGGCCGAGGT CGTGC-CCTAGGGTGCCTGTCCC TGCG GGGACAGGCACCCTTGCCGCAGG TGTCGTTCCCCGGGC  86 16
CXD92_RS09300 1917689 .. 1917717 + -10.1  -3.06915   CAGAACGTTCAGGCC        GCGGGCGCGCCGC ATG GCGGCGTGGTGGC        TTCGGTCGCCTACCT  60 125
CXD92_RS09305 NONE
CXD92_RS09310 1919186 .. 1919205 +  -4.2    -3.889   ATACGGGCATCCCGG            GGTATGGCG GCT CGCCG-GCC            TTTGCTATCCTTGCG  57 62
CXD92_RS09315 NONE
CXD92_RS09320 NONE
CXD92_RS09325 NONE
CXD92_RS09330 1925597 .. 1925651 + -15.7  -2.71364   GGGGCGGAGAACGAG TAGGCGG-GGATGCGGTGCCTGTCCC CGTG GGGACAGGCACCGTGCCAACCGTCAA TCGTTGACGAAGTCC  75 23
CXD92_RS09340 1927250 .. 1927261 +  -7.2  -4.59773   TCTATATCCAGCATG                GCGG CGCT CCGC                 TTTTTCGGGCTCAAG  79 84
CXD92_RS09360 NONE
CXD92_RS09365 NONE
CXD92_RS09370 NONE
CXD92_RS09375 1933330 .. 1933346 +    -3  -2.78679   CGGGCGAGGGGGCCT              GAGATG CGCGC CATTTC              CTTTCCGTCCCGGCG  40 24
CXD92_RS09380 NONE
        cpaB 1934727 .. 1934741 +  -3.5  -3.01791   GTGCGCGGCGGCGAC               GTGCA GGCAG TGCGC               TATTGACGAACAGCT  44 5
CXD92_RS09390 NONE
CXD92_RS09395 1937531 .. 1937554 + -12.4  -3.16564   CCGCCATCCATGGAA          TTCGGCGCCG CGGG CGGCGGCGAA           TTCATCGCGTCCGAA  69 58
CXD92_RS09405 NONE
CXD92_RS09410 NONE
CXD92_RS09415 NONE
CXD92_RS09425 NONE
CXD92_RS09430 1945678 .. 1945714 +  -4.4  -3.04398   CCGAAACGGCCGATG   GCGTGG-CCGATCCG TAACCGGC CGGGTTGGGCCACGG    GTTTTACGAAACCGC  45 9
CXD92_RS09435 1946518 .. 1946533 +  -3.2  -3.83318   GTATGGCGGGGCGGG              GCATAG GCGG CTACGC               TTGTATTATTGCCGG  56 74
CXD92_RS09440 NONE
CXD92_RS09445 1947878 .. 1947904 + -11.5  -3.65351   GGTCCGGCGCCGGTT        CGCCGGCGCCGC GGCC GCGG-GCCGGCA         TTTCCGTCCAGCTCG  75 105
CXD92_RS09450 1948490 .. 1948502 +  -2.6  -3.29471   GCTGGGCGAGCCCCC                GGTC CCTTC GGCC                TTCGTATCATGAACG  44 1
CXD92_RS09455 1948991 .. 1949010 + -16.4  -3.75629   CCGGGGCAAAAAAAA            CGGGCCGC GCAT GCGGCCCG             TTTCGGTTGCGCCTG  88 95
CXD92_RS09475 1953303 .. 1953315 +  -7.7  -2.71144   GCCCTCCAGGCCCGT                GACGT CGA ACGTC                TCGTTGCCCACGATG  49 311
CXD92_RS09490 1959260 .. 1959285 +  -4.7  -3.06696   GCAATGCTCGCCTGG         CGCAGGAC-TGG GGT TCACGTCCTGCA         TGTCTTGAAACGCAA  45 133
CXD92_RS09495 1960295 .. 1960329 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 271
CXD92_RS09525 NONE
CXD92_RS09530 1966460 .. 1966479 +  -9.2  -2.72344   GCGCGCATGAACAGC            GGCCTGGC CTGC GCCACGCC             TGCTTCGAAATCGGC  52 243
CXD92_RS09540 1966956 .. 1966974 +  -4.4  -3.66018   GGGTGAACAGGCCAG             CCAGCCGG TGC CCGACTGA             TTCTTCCCATCCTCC  55 7
CXD92_RS09545 NONE
CXD92_RS09550 1969033 .. 1969079 +  -7.2  -3.55444   ACAAAGGGGAGCCAG GCGGCGG-TC-CGCCTGCCGGT CGGAA ATCGGCGAGCGTGTTCCGTCGC TTTACGGAATCGGAG  58 339
CXD92_RS09555 1969791 .. 1969825 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 262
CXD92_RS09575 1973656 .. 1973689 + -15.9  -2.70932   GCGCGCGGCCGCGGC     CGACGTGGCCGGCGC CGGC GCGTCCGCCTCGTCG      TCCTTGAAGCGGCGC  75 93
CXD92_RS09590 1976267 .. 1976323 +  -7.2  -4.64334   GCAAGGCGCGTGCGG CCCT-GTCCACGCGCGGCGGCCCC-CC GCGCAA GGCGGGGCAGCCGC-CGCCAACCAGGG TTTTGTTGCGGCGTT  79 173
CXD92_RS09595 NONE
CXD92_RS09600 NONE
CXD92_RS09605 1978870 .. 1978908 +  -5.3  -4.07568   ACCAGAAGGCGAGAG   AGCAACGCTTAGTGCTG CGAGT CAGTGTTAAGCGTTGGG   TTTTGGCCCGACAGC  64 72
CXD92_RS09610 1982133 .. 1982143 +  -6.8  -3.65314   AACCGACTGCCAGGC                 GCAC GCT GTGC                 TTCTTCCAAATTCAA  61 127
         rrf 1982318 .. 1982352 + -19.5  -4.59773   CAGGCTTTTATTGCT    CAAAACCCCGC-AGCC TCAC GGCTCGCGGGGTTTTG     TTTTTGGGGGTACGC 100 36
CXD92_RS09635 1986248 .. 1986270 +  -4.7  -2.70932   TGAACGGCCGATGCT           GCAGCAGCG GGTGG CGCAGCTCC           TCGTTGGCGCGGCGC  43 296
CXD92_RS09680 1994725 .. 1994735 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 180
CXD92_RS09685 1995774 .. 1995784 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS09690 1996933 .. 1996972 +  -8.4  -3.60098   AAGCGCCGTGGCAAA  CACAGGAGTCGCCCGCGCG TTG CGCGTGCGCGGC-CATGGG  TTTACGCTAGCGCCT  62 170
CXD92_RS09695 1999230 .. 1999243 +  -5.9  -3.82824   GCAGGTCGGCCAGGA               CGGCG TCGA TGCCG                TTCTTGTCGATCGTG  63 408
CXD92_RS09720 2003457 .. 2003511 + -11.8  -3.84712   CTATTGACAGTTCAC AGCTAGGATGCCGCCGACCCCGGCGC CAT GCGCCGGGGTCGGCCGTCGCAAATCA TTTCATCTCCAATTG  79 20
CXD92_RS09725 2005035 .. 2005047 +  -4.7  -2.71712   GTCGCCGGCCCCGTA                CGCCG GAG CGGCC                CTTTCCCGGGCCGCG  43 145
CXD92_RS09730 NONE
CXD92_RS09735 2007257 .. 2007276 + -11.4  -4.11692   CGATATGATGGAAGA            CGGTCACC AGTG GGTGGCCG             TTTTCCCAATCGCTC  82 78
CXD92_RS09740 2007686 .. 2007701 +    -6  -2.83112   GGCCGCTGAGGCATG              CCGCGG CGAG CGGCGG               TATGATCGATTGCAT  48 32
CXD92_RS09745 2009001 .. 2009028 +  -2.5  -3.08679   CTGCGGCGAGGGGGG        GGCGCAGTGGC TACAAT GCCGCGATGCC         TATTCGCTACACCCC  42 87
CXD92_RS09750 2009858 .. 2009870 +  -3.3  -3.78793   GGCCGCCGCAAAGCA                GGCTA CCA TCGCC                TTATTCATAATTATG  56 89
CXD92_RS09755 2010716 .. 2010743 +    -9  -3.01712   GCCGCCGGCGAAAGC        GCCGGCCTGATC GCCC GGCTGGGCCGGC         TGTTCGAGCGAGACA  57 69
CXD92_RS09760 NONE
CXD92_RS09765 2013187 .. 2013216 +  -8.5  -2.62983   AGCGCTTCAGGACGG       TGGCGCGCAAGGCC GAC GACCTGGC-CGCCA       TCCTGTACACGTCCG  52 485
CXD92_RS09775 2015471 .. 2015494 + -13.8    -4.015   TGAGGGACGAAAGGG          GAGCGGCGCC GGCC GGCGCGGCTC           TTCTTTCATCGCTGG  84 53
CXD92_RS09780 2016119 .. 2016138 +  -5.6  -3.32343   GTGAAGTAGGGGTTG            C-GCCGTCC CGC GGCCGGCCG            TTCTAGGGATATCCC  51 32
CXD92_RS09785 2017253 .. 2017284 + -20.8  -2.71712   TCAAGTAATCGCGTA      TTCGGCCGGGCGCC GCGC GGCGCCCGGCCGGC       ATTTCCACCGAACAC 100 33
CXD92_RS09795 2019272 .. 2019315 + -10.9  -3.14344   GGTTGCGCGCGGACA GGCGCAGGCCG-G-GGCCGGG CAGG CCCAGCAGCACCGCCTGCGCC TTGATCAAGGCGATG  64 257
CXD92_RS09805 NONE
CXD92_RS09810 NONE
CXD92_RS09815 2022480 .. 2022496 +  -2.1  -4.62069   GCGCGCTTTTACCTC              CGTGAGG AAT CCATGCG              TTTTTCGCCTCAGCG  70 266
CXD92_RS09820 2023825 .. 2023856 +   -15  -4.26076   GCCAGCAGTCCTAAG      CGGCGCGCGGCGCC CGAC GGCGCCGCGTTCCC       TTTTCGTGAGCATCG  95 27
CXD92_RS09825 2027322 .. 2027353 +  -6.5  -3.61398   TGGCGCCGCAGGGCG      C-CACGCCGGCCGA CGAGA TCGGCTGGTGCGAG      TTCTTCCGCGACGCG  56 227
CXD92_RS09835 2029359 .. 2029377 + -11.6  -2.56271   GCGGCCACGCCTGAA             GCAGGGCG GGG CGCCCGGC             GTATTATCATCACGA  61 27
CXD92_RS09840 NONE
CXD92_RS09845 NONE
        uvrC NONE
        pgsA 2033489 .. 2033499 +  -8.2  -3.85698   GTGGCGGGCTGGTTC                 GCGG CCG CCGC                 TTTCTGGAGACCGCG  68 111
        aceA 2037350 .. 2037371 + -11.5  -6.06723   GTTGCAGGGTGGATT           TGGGGCGTC CTCG GACGCCCCC            TTTTTTTTTGCCGCC 100 85
CXD92_RS09875 2038754 .. 2038770 +  -5.1  -3.78034   CCCGGTGGCCAGGGC              GCTGG ATACGTC CCAGC              TTCTTGATGTCGATG  58 494
CXD92_RS09900 NONE
CXD92_RS09905 NONE
CXD92_RS09910 NONE
CXD92_RS09915 2045866 .. 2045879 +  -2.4  -4.25658   CACGACGGGAACGCC               TCGT ATGACA ACGA                TTATTTTCATCGCCT  62 43
CXD92_RS09920 NONE
CXD92_RS09925 2047425 .. 2047440 +  -6.1  -3.20382   CGTCGATCGACTCCT              GCGCT TCGGCC AGCGC               TTCGTAGATCTGGAA  50 100
CXD92_RS09955 NONE
CXD92_RS09960 2056971 .. 2056981 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS09965 NONE
CXD92_RS09970 NONE
CXD92_RS09975 2059574 .. 2059592 +  -6.8  -3.28712   ATGCCTAAGCCATAA             GATGTATT ATA GATACATC             TTATAAACCGCAGGA  54 442
CXD92_RS09985 NONE
CXD92_RS09990 NONE
CXD92_RS09995 2061717 .. 2061733 +  -2.1  -3.08046   CCCAAATCTGCGAAA              ATCCGCC GTT GGCCGAA              CTTTTGCAGTGAGAA  42 60
         xth NONE
CXD92_RS10005 2064138 .. 2064149 +  -2.2  -2.90571   CCGCTACCAAAACGG                C-CGG AAT CCGTG                TATAGTTGCGGACTT  40 82
CXD92_RS10010 2064261 .. 2064288 + -12.8  -5.63517   ACACCAGACGGAAAA        GCCTTGGA-CACG CCA CGTGGTCCAGGGC        TTTTTTGTTTCCGGC 100 42
CXD92_RS10045 2070549 .. 2070576 + -18.4  -2.50443   CAGACGCCTCCCGGC        CAGGCGCGCGCA CGCC TGCGCGCGCCCG         CTTCCTGCCCTCTCC  87 406
CXD92_RS10065 2074789 .. 2074807 + -17.4   -5.1971   CACCAGTTTTCTCAT             GGCCGCGC CCA GCGCGGCC             TTTTTGCTTTTTCCT 100 249
CXD92_RS10095 2080286 .. 2080296 +  -2.4  -2.71461   AGCAATCGGCATTGC                 CGCC ACG GGCC                 TCGGTTTCCTATTCT  38 101
CXD92_RS10100 NONE
CXD92_RS10105 NONE
CXD92_RS10110 NONE
CXD92_RS10115 2085510 .. 2085556 + -17.2  -3.56821   CAGCGGCGCAGGCCC GTCGCCGCC-GGCCGGCGCGG CGTCCC CTTCGCCGGCCTGGCGCCGGC TTTCCAGGATCTCCT  93 418
CXD92_RS10130 NONE
CXD92_RS10135 NONE
CXD92_RS10140 2089100 .. 2089134 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 213
CXD92_RS10160 2091534 .. 2091544 +  -2.4  -2.71712   CCGCTTGCCGGGATA                 CTGG GGG CCCG                 CTTTCGCCCGCGAGA  38 75
CXD92_RS10165 NONE
CXD92_RS10170 2094561 .. 2094592 +  -6.4  -3.23216   CAGACGCGATTGACG      CGCGCC-GCCTCGGG CCC CTGGTGGCCGGTGCG      TTCGTGCTCGTGCGG  50 480
CXD92_RS10180 2095759 .. 2095816 + -21.1  -2.83403   GTTTAATAGCAACAT CCTTCGTCCTTCGAACCGCCGCCCGGC CCAT GCCGGGCGGCGGCCCGGGCGATGGCGG CTTTCCTGGCGGCGC 100 102
CXD92_RS10185 2096591 .. 2096617 +   -10   -3.5393   CCAACCGCGATCTGG         TGGCCGCCCTGC TCA GTTGAGCGGCCA         TTTGCGCCGGATCAT  67 6
CXD92_RS10190 2098839 .. 2098859 +  -5.3  -3.57144   CGATGGGCCCGGGCA            GCAGCCGCT CGA AGCGGATAC            TTTGCGCGTCCAGGC  54 514
CXD92_RS10205 2100250 .. 2100301 + -11.6  -3.14931   CGCGCCCGGCTCAGT C-GGCCGGCG-CGCGCCGCACCG-CG GCGT CGACGATGCG-CTCGGCGCCGGCCAG TTGCTGCGCCATCCC  66 41
CXD92_RS10215 2101142 .. 2101173 + -24.6  -2.82759   TACGGAAGGATTCGG      CAGGAGCCTGTCCC CGTC GGGACAGGCTCCTG       TGTCATAGGTATCTT 100 121
CXD92_RS10225 2102970 .. 2102988 + -10.2  -3.01712   AGGTCGTAGCGCATC             GCCGCCAG GCG CTCGCGGC             TGTTCAGCGGCAGGA  59 358
CXD92_RS10235 2104958 .. 2104973 + -10.4  -2.78384   GCCAGCTCGGGGTCG              TCGCGC AGCC GCGCGA               TATAGTCGGCCACCC  56 498
CXD92_RS10250 2107524 .. 2107546 + -11.3  -2.70932   TGGCGCTGTAGCTCA           CCAGCAGGC ACTTG GTCTGCTGG           TAATTCGACAGCGCC  59 148
CXD92_RS10260 2111298 .. 2111332 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  50 191
CXD92_RS10305 2119268 .. 2119302 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS10315 2121166 .. 2121193 +  -5.5  -3.66058   CGCCGCGCCCGCCGC        CGC-CGTGGCGC AACCC GCGCCATGAGCA        TTCTCTATCTGCTGT  57 1
        ccoS 2121713 .. 2121736 +  -7.4  -3.28924   TCGTATTACGTGGTG          CAG-CGCACCT GTC AGGCGCGGCTG          TTCTGCGACAAGCTG  56 408
        ccoO NONE
CXD92_RS10335 NONE
        ccoP NONE
        ccoG NONE
CXD92_RS10350 NONE
CXD92_RS10355 2126791 .. 2126808 +  -3.3   -3.6761   GCGGCCAGGACGAGA             CGCCGTT CTGA AGCGCCG              TGTTTGTTGCGACGC  53 15
CXD92_RS10360 NONE
CXD92_RS10365 NONE
CXD92_RS10370 NONE
CXD92_RS10375 2130404 .. 2130431 +  -6.2  -3.01712   GGCCCGGATGGTGGC        GGCCGTC-AGCTG CGC CAGCGCGACGCCC        TGTTCGGGCCCGGCG  48 476
CXD92_RS10385 NONE
CXD92_RS10390 2132183 .. 2132222 +  -9.4   -3.5361   CCTGGACGAATACAA  CCTATTGACAGTTCACAC CTAG GTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD92_RS10395 2133589 .. 2133613 +  -4.9  -3.77087   AGAGCCGACTTGTAA          TCGGCCTCG GTGCGTA CGGGGCGGA          TTTCCATGTTCACTC  58 361
CXD92_RS10405 2134668 .. 2134685 +  -8.3  -3.67954   GGCGCGGCTGGGGTG             GCGCAGC TTGC GCAGCGC              TTTGGCCTCTATTTG  67 483
CXD92_RS10420 2137666 .. 2137683 +  -8.3  -3.63968   CGCCTCGTCGGTCGC             CAGGCCG CTTT CGGCCAG              TTTCGCCATTTCGGC  63 129
CXD92_RS10515 2159477 .. 2159495 + -17.4  -3.15544   TCTGAACGCAAGGGC             CCCCCGGC GCG GCCGGGGG             TTCCTGCCCATGGCA  84 36
CXD92_RS10530 2162464 .. 2162474 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS10540 2163457 .. 2163496 +  -9.4   -3.5361   CCTGGGCGAATACAA  CCTATTGACAGTTCACAG CTAG CTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD92_RS10545 NONE
CXD92_RS10550 NONE
CXD92_RS10555 2166287 .. 2166309 + -11.2  -3.57144   CGACGCGCTGGCCGC           GCTGGCGCGC CGC GCGCCCTAGC           TTTCGCGCTCGCCCG  70 4
CXD92_RS10575 2169040 .. 2169059 + -16.4  -3.90112   TCGCGCCAAGACAAA            CGGCCCGC TTGC GCGGGCCG             TTTGCTTGCCGGCAG  93 53
CXD92_RS10665 NONE
CXD92_RS10670 2189892 .. 2189910 + -17.4  -3.10522   GTACGCCAAAAAAAA             CCCGGGCC AGC GGCCCGGG             TCTGTTGCGTCGCCT  84 135
CXD92_RS10725 2201749 .. 2201759 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 86
CXD92_RS10730 2203117 .. 2203132 +    -6  -2.50699   CAGGTCGAAATGCTC              GGCGGC AAAC GCCACC               ATATCTTCCTTGAGC  44 379
CXD92_RS10790 2213640 .. 2213668 + -19.7  -4.15508   GGCACGGCCGGCATC        GAGAAGCGGAGCC CAT GGCTCCGCTTTTC        TTTTGCGGCTTGCTT 100 45
        lexA 2214449 .. 2214463 + -12.8  -4.74103   CTACGCGGGCTTGCT               GCCCCC CGA GGGGGC               TTTTTGCCTTGGGGC 100 75
CXD92_RS10880 2229158 .. 2229182 + -22.9  -4.11692   GATAGCCGAAAAAAA          CCGGGCCCGGA TGA TCCGGGCCCGG          TTTTGCGGGTCGCTG 100 91
CXD92_RS10905 2236010 .. 2236035 + -14.7  -5.14563   GGCGCGCAACAAAAA         GCCCCACTGCC GCGA GGCAATGGGGC          TTTTTTCATGCGGCC 100 45
CXD92_RS10940 2240540 .. 2240576 +   -21  -4.59773   TTCGCGTGCGCAGTC    GAACTGCCGCCATCCC CACAA GGGATGACGGCAGTTC    TTTTTACGGATGGGG 100 71
        dapD NONE
CXD92_RS10960 NONE
CXD92_RS10965 2244925 .. 2244935 +  -4.6  -2.64912   GCGAACAATTGAACA                 CGTG ATA CGCG                 CTTCTGGCTTGACCC  42 21
CXD92_RS10970 2246900 .. 2246910 +  -2.4  -3.58365   GCGCAGCGTAAAACC                 AGCG AGA CGCA                 TTATCTCCTATACTC  48 74
CXD92_RS10975 2250286 .. 2250300 +  -7.1  -3.53012   TGCGGCTTTGCGCCA               GGCTG AGATA CAGCC               TTTCCCGGGCCCGGG  58 488
CXD92_RS10990 2254183 .. 2254217 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS11005 NONE
CXD92_RS11010 NONE
CXD92_RS11015 2261521 .. 2261536 +    -6  -4.08945   CACCACTTTGACAGG              CGGCGC CGCC GCGCCC               TTTTCCCGCCATGCT  66 104
       coaBC 2262921 .. 2262973 +  -9.2  -3.53174   CCTCGATCAGCGAAT GCGACAGCGACAGCCAGGCCAGCGC CAGAAA GCGC-GGCCGGGCT-TC-CAGTTGC TGTTTCTCCGCCTCT  61 191
CXD92_RS11030 2264305 .. 2264327 +  -6.8  -2.84298   AGGACGAGCCCGTGG           TCGCCGTGCC CGC GGCGCCGCGC           TAGTTGTGAACTGTC  50 0
CXD92_RS11060 2269449 .. 2269465 +  -2.1  -3.61398   AGCAAGGTATGGCCG              GCCAGCC GGC GGATGTC              TTCTTCACCGCGCAA  50 223
        cphA 2274956 .. 2274976 + -15.4  -3.61398   TTCGCCCCTCTTGCC            GCGCCGCC CGAAC GGCGGCGC            TTCTTCGACGACAGG  83 50
        cphA 2277634 .. 2277651 + -14.1  -5.28176   CTCAAATGTAACTTG             GGCCGGC GCAA GCCGGCC              TTTTTTCTCCCTGCG 100 84
CXD92_RS11085 NONE
CXD92_RS11090 NONE
CXD92_RS11095 2278678 .. 2278699 + -15.9  -5.86965   CGCCGTACGTGTACC           GCCTTCGGG TTCG CCCGAAGGC            TTTTTTTTGGTGCCT 100 73
CXD92_RS11115 2281163 .. 2281181 +  -5.9  -3.16564   GCTGGCTCAGCCTGC             GGCCGAC TGAGC GTCGCCC             TTGATGGCCTCGGCG  51 16
CXD92_RS11125 2284086 .. 2284112 +  -5.1   -2.8352   CGAGCTGGCCACCAT        CCGGC-CCGCCGT CTG ACG-CGGAGCCGC        CTTGTTCAGTTACCG  46 10
        rlmJ 2285359 .. 2285401 +  -8.8  -3.28924   CACCACGCCCAGCGC CGCCCGGCGCAGGCCCGGCG CGA CGTCCGGATAGCGCGCGGCG TTCTCGCCGGCGATG  59 407
        cueR 2288218 .. 2288240 +  -8.3  -3.29144   CGGCCGCCTCGGCAA           GGCGCTCGG CCTCC TCGCGCGCC           TTCTGCCGCGCCTGG  58 72
        plsY 2295569 .. 2295597 +  -2.9  -3.86015   CCACCGCGCGCCGAT        GACCGCGAGTTGG TGC CCAAAGCGAGGAC        TTTGTGGGACAGATA  56 162
CXD92_RS11195 2297093 .. 2297120 +  -9.8  -2.52464   GGCGCGGATGGCCTT        GGCCGCCAGC ACCTCGAC GATGGCGGCC         TGCGTTGCCGCCGCC  55 402
CXD92_RS11205 2299305 .. 2299335 + -18.3  -3.58343   CGCGCGCCTCGCCCC       GCAAGCAGGCCGC CTCGC GCGGCCTGCCTGC       TTTCGAGGTCGTCAA  90 49
CXD92_RS11215 2301145 .. 2301160 +  -4.6  -3.64703   AATTCCAGTTGCGCG              CCGTCG GCGT CGAAGG               TTTCGCTGCGCACGC  54 146
CXD92_RS11240 NONE
CXD92_RS11245 NONE
CXD92_RS11250 NONE
CXD92_RS11255 2310278 .. 2310288 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS11260 2311469 .. 2311483 +  -8.5  -3.35813   TGCCTGGAATAAGGG               GCCGC TCGGC GCGGC               TTCGTTAACCTCGAC  59 202
CXD92_RS11285 2316897 .. 2316910 +  -8.1  -3.06261   CGACCTGCGCCGCCA               GCTCG GCTT CGAGC                TGTTCCGCGTTCGCG  52 279
CXD92_RS11295 NONE
         alr NONE
CXD92_RS11310 NONE
CXD92_RS11315 2324670 .. 2324685 +    -6  -3.53811   CGCAGCATGCGGTCC              GCGGCG GTCT CGCCGG               TTTCCACCACGTAAC  56 158
CXD92_RS11330 2326811 .. 2326844 +  -2.3  -3.60792   GTAGTCCCCATACGT     CGCGTCGTAAGTTTT ACGG AAGACGTTCAGCGCG      TTGTATCTGAATGCT  48 37
CXD92_RS11335 2327999 .. 2328009 +  -2.4  -4.07568   CACCACCGCCAGCGT                 GCTG ATG CTGC                 TTTTCCGAACCCGGG  58 448
CXD92_RS11445 NONE
        sycN NONE
CXD92_RS11455 NONE
CXD92_RS11460 NONE
CXD92_RS11465 NONE
CXD92_RS11470 NONE
CXD92_RS11475 NONE
CXD92_RS11480 2349611 .. 2349632 + -12.9  -3.01712   TCGCCGCCGACCTAG           ACGCCGCGC GTCA GCGCGGCGA            TATTCGGGGCCGAGG  70 65
CXD92_RS11490 2351842 .. 2351854 +  -4.1  -3.55444   AGGCGGTCGCCCGAG                TCGAG GTC TTCGA                TTTCCACGGTCGCGC  51 511
CXD92_RS11500 2354893 .. 2354933 +  -3.2  -3.28712   CGTAGCGGTCCAGGT CCT-GTCCG-GTCATGGCGG CGA CCGCCTTCACGTGGCCCAGG TTCTCGGCCACCAGG  47 523
CXD92_RS11510 2356180 .. 2356204 + -11.4  -3.14344   TGGCGCAGCGGCTGG         CGGCGCG-CTG AAGC CGGCCGCGCCG          TTGATGGCGCGCATC  66 15
CXD92_RS11515 2357779 .. 2357813 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS11550 NONE
CXD92_RS11555 2365899 .. 2365915 + -15.1  -3.05384   GGCTGCGCCGAGACG              GCCGGCG TGG CGCCGGC              TTCGGTCGGCAGGCC  74 475
        htpX 2368283 .. 2368302 + -16.4  -4.18018   GTCCGCCAGCGAAAA            CGCGCCCC GCAA GGGGCGCG             TTTTGCATGAGCCAA 100 52
CXD92_RS11585 NONE
CXD92_RS11590 NONE
CXD92_RS11600 NONE
CXD92_RS11605 2376522 .. 2376577 +  -5.5  -2.82623   GGTTGGACGCCACCA CCACATCGAACCAGTCCGGGTGCTGCAC GAA GTGC-GCGCACAGGATG-T-CGATGTGG TACTTGTCCCAGCGC  44 400
CXD92_RS11620 NONE
CXD92_RS11625 NONE
CXD92_RS11630 NONE
CXD92_RS11635 2384644 .. 2384678 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
        gabT NONE
CXD92_RS11650 NONE
CXD92_RS11655 NONE
CXD92_RS11660 NONE
CXD92_RS11665 NONE
CXD92_RS11670 2391986 .. 2392042 +  -3.7  -3.53012   GGCGCGTCACCATGC CGGTGAC-CGGCTCGCCGCGCAGGA AGGCGCGGA TCTTG-GCCGCCAGCTGCGCCACCG TTTCGCGGCGCAGGC  49 65
CXD92_RS11680 2394869 .. 2394885 +  -2.1  -3.17051   TATCATGCCTATCAG              GCCCGAT TGC ACCGCGC              TGTTGCTGGTGCCGG  43 498
CXD92_RS11695 2398259 .. 2398277 + -17.4  -3.55622   AGCGCAATAACCGTC             CGGGCGGC CAT GCCGCCCG             TTTCCCGGCCTTGCC  89 31
        purD NONE
CXD92_RS11705 NONE
        nadD 2401207 .. 2401219 + -10.5  -3.93489   TCCGCCACATCGACA                CCCGC GCC GCGGG                TTATATTTATCGTTA  77 60
        rsfS NONE
        rlmH NONE
CXD92_RS11725 2403184 .. 2403214 +  -7.5  -2.73364   GATACGGCGCCCGCC      GCGCAGCAACGCGC CCAG GC-CGTGGCTGCGG       TGCTTGGCATCGACC  49 472
CXD92_RS11760 NONE
CXD92_RS11765 NONE
CXD92_RS11770 2414451 .. 2414470 +  -7.8  -3.67597   ATCTAGCGCATCGGG            CCCGGCATG CAG CG-GCCGGG            TTCTTCAATAGCGCC  63 35
CXD92_RS11785 2417775 .. 2417795 + -15.4  -2.57132   CAGGCGCTGGCGCTG            GCCGCCCG ACAGG CGGGCGGC            ATTCTGGCCCACCGG  69 298
CXD92_RS11795 NONE
CXD92_RS11800 NONE
CXD92_RS11805 2421440 .. 2421478 + -19.7  -3.01712   AGCTGACATCCGCGG  C-GAGGTGTGCCTGTCCC CACT GGGACAGGCACACCGCAG   TGTTGACGGGCGCCG 100 84
CXD92_RS11820 2425777 .. 2425816 +    -2  -3.44527   CTCGCGTAGCGGCGC GGGCAGGCT-GCCCGCGG CAGCCA CCA-GGTCGAGCCAGCCC  TTGTCGTAATCGGTG  47 463
        lpxO 2433656 .. 2433691 + -20.4  -2.53015   TGGCACTCTAACCAC    CCGGGTGCCTGTCCCC GCGG GGGGACTGGCACCCGC     TGACTTGGCGCCTGT  95 30
CXD92_RS11860 2439196 .. 2439250 + -13.5  -3.04322   TGGTTTTCATCAAGA AGCTGTAACCAGCCGGCTTGCCGCCG CGCG CGGCGGCAAGCCGGCTAAA-ATGGCC TGTTCGCAACTTACC  70 18
CXD92_RS11865 2439577 .. 2439592 + -11.8  -4.90266   TTCGCCTCATCGCAA              CCGGCC GGCA GGCCGG               TTTTTCATTGATGCC 100 53
CXD92_RS11870 2441580 .. 2441602 + -12.6  -3.61715   TCTCGATGGCTTCTT           CGCCGCGCGC CAG GCGCTCGGTG           TTCTTGACCCCGGTG  74 122
CXD92_RS11895 2447558 .. 2447612 +  -7.2  -3.39327   ATTGAGCGAATCGCC GCCGCGCGCGTAGTACATGTAGAC CACGCCCCC GTC--CATGAACAACGCGCGCCGC TTGTGGGTGTAGCCG  55 480
CXD92_RS11945 NONE
CXD92_RS11950 2457666 .. 2457676 +  -3.2  -2.63631   TCCCTTCGAGCAACC                 TGGG CTA TCCA                 TCATGTCGCAGTTGA  39 53
CXD92_RS11955 2458991 .. 2459001 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS11960 2460025 .. 2460060 + -14.7  -2.70932   TCTAGTGCATCTCAG   CGCGGCGG-GCAGGCGG CCCG CCGCG-GCGCCGCCGCG    TCGTTCCCGCCCACC  72 45
CXD92_RS12005 2468346 .. 2468367 + -14.4  -4.07885   CCGGCATTGCCGCCA           CGGGCCCG CGCAGA CGGGCCCG            TTTTGCAGGACCGTC  85 42
CXD92_RS12015 NONE
        acnD NONE
        prpF NONE
CXD92_RS12030 NONE
CXD92_RS12035 2476676 .. 2476689 +  -3.9  -3.53012   TCACGCTGGTTGTCG               TCAAA CCCT TTTGA                TTTCCGCGCCAGCGA  51 12
CXD92_RS12040 2478124 .. 2478135 +  -7.2  -3.28712   AAGCGCCGGCCCGCG                CGCC ACGC GGCG                 TTGTAAAAGCGCCGC  54 39
CXD92_RS12045 2478577 .. 2478595 +  -7.4  -5.75342   AAGCCCCTTTTAAGA             CCCGCT CTAAACC AGCGGG             TTTTTTTTGGCCGGG 100 96
CXD92_RS12055 2480120 .. 2480140 +  -8.3  -3.09492   AATAACCCTTATACG            TCCCCGT TAGGGAT ACGGGGA            TGTTGCAGTTCACGG  56 39
CXD92_RS12060 NONE
CXD92_RS12065 NONE
        hslO NONE
CXD92_RS12075 2484658 .. 2484674 +  -7.9  -2.84325   ACAGGCCGGACTTGT              CCACGCC GAA GGCCTGG              TCGTATTTGCCGGGC  52 449
CXD92_RS12095 2488148 .. 2488181 + -27.5  -3.16742   CGGAAGACAGCGGTT     TCCGGCCGGGCCGCG ATGC CGCGGCCTGGCCGGA      TTACTGACCATTAAC 100 487
CXD92_RS12190 2508576 .. 2508622 + -16.5  -5.00884   CGGCATGTAAGCGCG GGCGCGCACGTGGGCGCC-GGCA GGA TACCAGGCGCCCTCGCG-GCGCC TTTTTTCCAGACCGT 100 31
CXD92_RS12195 NONE
CXD92_RS12200 NONE
CXD92_RS12205 2511304 .. 2511322 +  -8.8  -3.45849   GATGCCGTCCAGGCC             CGCGGC CAGCCGC GCCGCG             TTGTCGTGGTCTAGC  61 273
CXD92_RS12240 2519896 .. 2519913 + -14.1  -4.41494   AAGGCCCAAGCAAAA             GCGCCCC GTCC GGGGCGC              TTTTGCTTGGGCCTC 100 61
CXD92_RS12250 2521565 .. 2521594 +  -8.5  -3.05596   GACAGTTCACAACTA       GCCGTTCA-GGCCG GCC CGGCCCTGCACCGC       TTCGCTGACCACCTG  55 25
CXD92_RS12270 NONE
CXD92_RS12280 NONE
CXD92_RS12285 2529592 .. 2529619 + -18.4  -2.71924   CATGACCTGAGCCGC        GCGGGCGAGGCC TGAC GGACTCGCCCGC         CTTTCCGGGAGGCTG  87 11
CXD92_RS12290 2529955 .. 2529974 +  -2.7  -3.63266   ATGCGCAACGTACGG            CCCGGCT GAACAG GGCCCGG             TTTCCGATGGATTTT  53 17
CXD92_RS12295 2530797 .. 2530815 + -14.6  -5.78622   CTGCGCAGCGAAAAA             GGCTTGCC AAC GGCAAGCC             TTTTTTTTCGCCTCC 100 50
CXD92_RS12300 2531906 .. 2531928 +  -5.5  -3.83026   AGGCGGCCAACCCAT          GACCCGCACC AGCC GG-GCGGATC           TTTCATGTGCCGCGG  60 24
CXD92_RS12305 2533019 .. 2533029 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 171
CXD92_RS12315 2535229 .. 2535276 +  -7.4  -3.64822   GGTTGGCGATGCCCA CGCCGTGGCCGGCCAGCGCCAG TTGG CAGACGGTGGACGAATACGGCG TTTCGATGGCGGCGT  60 228
         maf NONE
CXD92_RS12420 NONE
CXD92_RS12425 2554198 .. 2554243 + -13.1  -2.71712   TGACGGAGAAGCACC AGGCCG-CGCGCGACATGGTGC TGC GCGCCCTGCCGCGCGGCGGCGG CTTTCGCGAAGACGA  67 217
CXD92_RS12460 2561362 .. 2561381 + -13.6   -5.5112   CGCCAGACATTGCAA            GCCCCTGA TCCG TCAGGGGC             TTTTTTCTTGGTCCC 100 36
CXD92_RS12465 NONE
CXD92_RS12470 NONE
CXD92_RS12475 NONE
CXD92_RS12480 NONE
CXD92_RS12485 NONE
CXD92_RS12490 2568743 .. 2568761 + -13.8  -2.61264   TCATCATGGAAGGCC             GCTGCCCG CTC CGGGCGGC             CTTGTCCATGGAGCC  69 111
CXD92_RS12495 2569998 .. 2570015 +  -7.7  -4.18197   GCCAAGGTCCAGGCA             CGCTGAA CATC TTCGGCG              TTTTCCATACGCACT  74 20
CXD92_RS12500 2572400 .. 2572425 +  -4.7  -5.29846   AAATACCCAGGAAAC         CCCTGTAGA ACCGAGCG TCTGCGGGG          TTTTTCTTTCGGGTT  93 107
CXD92_RS12505 2573332 .. 2573343 +  -3.6  -3.12668   CAGGCGCCGACGCCG                GCGT AAAT GCGC                 TTGGGTCTCCAGATG  45 85
CXD92_RS12515 2574585 .. 2574622 +  -9.8  -3.05384   CTGGCGCATAACGGC   CCGCGGGCCGGTCAGCC TTCCT GGCTGA-TGACCGGCGG   TTCGATCCAGAAAAA  60 30
CXD92_RS12525 2575494 .. 2575531 + -10.5  -2.59742   AAATTTGCCGCAACG   CAGCAAACGCCGGC-GTC CCG GACTGCGGGCGGTTGCGG   ATTGTCGCCATTGCG  57 153
CXD92_RS12530 2575984 .. 2576003 + -10.6  -5.40072   GCAAATCAATGAAAA            AGCCGCCC GGAT GGGCGGCC             TTTTTTTGCGGCACG 100 53
        trxB NONE
CXD92_RS12565 NONE
CXD92_RS12570 2584562 .. 2584572 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 77
CXD92_RS12575 2585555 .. 2585594 +  -9.4   -3.5361   CCTGGACGAATACAA  CCTATTGACAGTTCACAG CTAG CTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD92_RS12580 NONE
        kdpF NONE
        kdpA NONE
        kdpB NONE
        kdpC 2594318 .. 2594338 +  -6.7   -2.8655   CCTGGCGCTGGACCG            CCTGCGCTG AAG CGGCGCGCG            TATAGTATGCGTGCC  50 16
        kdpE 2598022 .. 2598056 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 203
CXD92_RS12645 2603517 .. 2603545 +  -5.8  -3.33261   TCTTGCGCACGTTGG        CCGTGGCCGCGC TGCCC GCGGCGCCACGC        TTGTAGGCCTTGAGC  52 186
CXD92_RS12660 2605305 .. 2605318 +  -9.5  -2.75183   TCCTTATCATGCCTC               GGCGC TGTC GCGCC                TCATTGACTGCCACT  55 87
CXD92_RS12665 NONE
CXD92_RS12670 2607540 .. 2607565 +  -7.5  -3.16881   GCACGAACCCCAGCT         TGCGGTGCAGCG CGA CGCTGC-CGGCG         TTGGTGGCGTCGATC  53 148
CXD92_RS12685 2611530 .. 2611559 + -22.3  -2.62616   GACATCCGCGACAGA       GTGTGCCTGTCCC CGCT GGGACAGGCACAC        TGCTCTACGCCATGA 100 97
CXD92_RS12725 NONE
        recN 2621554 .. 2621594 +  -2.3  -4.75776   ATTTACGAAAAATGT  CAAGGATCTTCAGGCGGGG AAA CGTCGCCTTCAGGCCCATG  TTTTTCAGTTCGCTT  76 453
        bamE NONE
CXD92_RS12745 2623367 .. 2623379 +  -4.7  -3.29144   TTGATCGATCAGCCA                GCCGG CGG CCAGC                TTGTAGCGGCCATCG  49 263
CXD92_RS12755 2624491 .. 2624512 + -14.5  -5.63236   TCCAGATTCAAAAAA           GGCCCAAAC TTCG GTTTGGGCC            TTTTTGTTTTTGCAT 100 37
CXD92_RS12800 2635083 .. 2635098 +  -3.2  -3.40403   CGCGACGCTATTCTC              GACTTC CCAC GAAGCC               TTGTCCTGCGAAGGG  48 53
CXD92_RS12805 NONE
CXD92_RS12810 2637592 .. 2637607 +    -4  -3.90588   CGCGCAGCGATACCC              CTTC-GG ATT CCAGAAG              TTTCATTACCCCATA  58 426
CXD92_RS12935 2662716 .. 2662748 +  -8.9  -4.07568   CCCGCCAGGAAGCGG      GCCTGCCGCGCGTAC GCG GCGCGGTCGGCGGGC      TTTTCGCCAAAGCGC  72 179
CXD92_RS12950 2665306 .. 2665356 +  -7.2   -4.0162   CCGAGTTTCGCGCCG CCGCAGCGCTCGCTGCTGGGCGAG ATC CTCGACTGGATGCTGGCGCCGCTG TTTCTCCTGTGGCCC  66 105
CXD92_RS12955 2666736 .. 2666751 +    -4  -3.71917   CCGGGCTGGTACGCG              CGATAG TTAC CTATTG               TTTCAAATTTAAGAT  54 61
CXD92_RS12960 2668584 .. 2668612 + -10.9  -4.60041   TGATAACCATCCCCC        GCCGGGTTGGACC GCT GCGCCAATCCGGC        TTTTTCAAGCTCCCT 100 38
CXD92_RS13005 2677400 .. 2677413 +  -9.5  -2.70932   CGAAGCCCTCTCCTA               GGCCC GCGC GGGCC                TGATTGCACAAGAAG  55 25
CXD92_RS13010 2678942 .. 2678964 + -19.2  -5.53288   TGCGTGCCCCGTACG           GGCCCGACAC GAT GTGTCGGGCC           TTTTTTTGCCTTGCG 100 243
        rdgC 2680654 .. 2680679 +  -6.7  -4.68724   GTAAATGACGTCCGC         GCCCGCCAGGCC CTC GGCCAG-CGTGC         TTTTCTGTTCGATCA  82 434
CXD92_RS13045 2683702 .. 2683749 + -21.2  -4.15788   CGATCCAGCGCCAGT GCGGCTGAGCATGCCGGCGGGC GCCT GCCGGCCGCCTTGCTCAGCCCC TTTCTTGAGCACGTT 100 18
CXD92_RS13065 2686217 .. 2686275 +  -2.2  -4.33153   CTGTCCACGCGCGCA C-GG-GCCGAGGAAGCGTGCCGGACTGCC CACG GGCAGCCCGGCGCGGA-CTACAGCTCCAG TTTGTTGATCTTGGC  65 78
CXD92_RS13075 2688231 .. 2688241 +  -6.8  -3.03159   AGCCCAATCAATGAC                 CGCT CGC AGCG                 TCTTGGGCGCGTTCG  51 121
CXD92_RS13120 2695646 .. 2695680 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS13130 2698030 .. 2698042 +  -3.4   -4.2349   CTGGACAAGTCCTTG                TTCC AGCGA GGAA                TTTTCGATCTGCGCG  63 69
CXD92_RS13140 2699433 .. 2699467 +  -2.1     -3.94   ATTGACAGTTCACAC    CTAG-CGTCC-ATGCCA GCT TGGCGTAGGACGTCCCG    TTGTTTACGGCTTGC  56 22
CXD92_RS13165 2702986 .. 2703020 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS13235 NONE
CXD92_RS13260 2721654 .. 2721698 +    -7  -3.67792   ACTGCTGGGCGCGCG CCACGCGCTCGGCATTCAGCC ACTT GG-TGACGGTCGTGCCCGTGG TTTCCCTGAATCTAC  64 358
CXD92_RS13270 2723704 .. 2723751 +  -8.4  -2.55544   AGGTCATCAGCAGCG CCATCGGCGTCACC-GTGACCTG GCC CAGCGCATAGTTGAAGCCGATGG TCACTTCCGTGATGA  51 224
        sulP 2729433 .. 2729448 +  -3.9  -3.54424   GCTGGCGAGCGGCCC              CGGCC CGGTCA GGCTG               TTTCCGGCGCTCACC  51 379
CXD92_RS13360 2741990 .. 2742003 +  -4.5  -3.54459   CGGTGGCAGGCCGTC               GCCAGG ATT CC-GGC               TTTGCGACGACTTGG  52 57
CXD92_RS13390 2748012 .. 2748033 +  -2.9  -2.65264   AGGCGGTAGGTGGCG           GCGAGCCAGT ACG AC-GGCATGC           TGCTGTGCGTGGTCG  39 47
CXD92_RS13435 2758859 .. 2758876 +  -4.1  -4.31943   TCCCGCCGCCCGCCA             TGAACCG GGGA CGCTTCA              TCTTTTTTCTGTACC  68 42
CXD92_RS13440 2759655 .. 2759678 + -16.7   -3.0806   CCGGGCCCGCGCGCC          GGCGGCGCG GATCGG CGCGCCGCC           TCTTGCGGATTTCGC  81 48
CXD92_RS13445 2760965 .. 2760975 +  -2.4   -4.4078   CATACGCGATGGTCT                 GGCC CTG GGGC                 TTTTCGTTGGCCAGC  68 83
CXD92_RS13475 2767843 .. 2767866 +  -2.2  -4.07568   CGGCAGGCGCCGCCG          CGGCCTGAGC GCCT GCCCAGCCCC           TTTTCCCGCCCCGAA  58 18
CXD92_RS13480 NONE
CXD92_RS13485 2770559 .. 2770584 + -13.3  -2.57132   CCTGGCGATCCTGCA         CGATGTGCCGC GTCA GCGGCGTATCG          ATTATCCCGGGCGCC  66 269
CXD92_RS13515 NONE
CXD92_RS13520 2776949 .. 2776986 +  -2.5  -4.58395   CGGCACGAGGCCGCG   GCCG-TCAATTCGCGCGG ATC CCGCGCTCGTCGATCAGC   TTTTTCCAGCGTGCG  70 112
CXD92_RS13535 2780126 .. 2780168 +  -3.9  -3.84406   GGCCGAATTAGCGCG CG-CCCGCCAGCCTGCCTGG CCGG CCAGCCAGGGGCGCGGATCG TTGTTGTCATAGCGG  58 339
        queE 2782224 .. 2782246 +  -4.8  -3.64703   CCATGACTGTCCGTC           CCATCGCG GGAGATG CGCGATGA           TTTCCGTCACCCGCC  55 35
        queD 2782927 .. 2782951 +  -7.8  -3.31792   CTTGGCGCCCTGCCC         CA-CCAGGCGC TTGA GCGCCGGGATG          TTGTGGGCGTCGTAC  55 266
CXD92_RS13575 NONE
CXD92_RS13580 2786190 .. 2786207 + -11.3   -4.1822   GCGCTCCAAGGCGGT             GTACCGC CTGG GCGGTAC              TTTCTTCGGCTCGGC  89 192
CXD92_RS13595 2788516 .. 2788543 +  -5.5  -2.53263   TGCACGCGGCCCTGC        CCGGCGGTCGAC ACCAG GTCGG-CGCCGA        TCAATTGCGCATCGC  42 428
CXD92_RS13610 NONE
CXD92_RS13615 NONE
CXD92_RS13620 NONE
CXD92_RS13625 NONE
CXD92_RS13630 2804669 .. 2804683 + -11.4  -2.91274   TAGCGGTCAATGAAG               GGCTGC AAG GCAGCC               TGTCGTTCGGCTGAG  61 128
CXD92_RS13640 2806455 .. 2806501 + -12.1  -3.35679   GCAACGCCGGCCATG GCGGCCGGCGTTGCGCCCTGCG AACC CGCCGCGATCAGCG-CGGCCGC TTGTCGATGACGCGC  73 45
        paaX 2817192 .. 2817217 +  -4.6  -3.62597   GCGCCTGCAGCAGCG         TGGCCGCCAC CAGCGC GTCGCCGCCA          TTGTTGCCCGGTCCG  54 497
CXD92_RS13715 NONE
        rsgA 2820197 .. 2820221 +  -4.3  -3.78419   GTCCCCACGAGGACA         GGCACCTGCCG ACTCC CGG--GGTGCC         TTGTATCTTTCCTCC  58 56
CXD92_RS13750 2826689 .. 2826741 +  -7.4  -3.36054   GGGCAAGACCACCGC GTGCGGCCTGCTGGCGCAGGCC GACCCGCAG GGCCTGCACCTGCCGTCCGACC TGTTCTATGGCTTTC  59 151
CXD92_RS13770 2830526 .. 2830553 + -11.2  -3.77119   CGCGCGCGGCGTGAT        GCGGGGCCCGGGC GGG GCCTG-GCGCCGC        TTGTATTCGTTGATG  74 501
        argH 2835029 .. 2835046 +  -9.8  -4.65895   CGCTCCATGTAAAAA             CCCGGC CTGCGC GCCGGG              TTTTTACATGCCGCG  93 49
CXD92_RS13805 2837938 .. 2837948 +  -8.2  -2.80622   CCGCGATTTCCGGCC                 GCGC GCC GCGC                 TATGATCGACTATCT  52 10
        moaA 2839408 .. 2839418 +  -4.6  -3.05384   TCCTCGCGGCTGTCC                 TGGC GTG GCCG                 TTCGGTGCGCAGCGG  46 372
CXD92_RS13840 NONE
CXD92_RS13845 2846630 .. 2846648 + -13.8  -3.05463   TCGGCCAGCACGGCC             TGGCGGCG TAG CGCCGCCG             TTCAGTCGGCGGGCT  72 15
CXD92_RS13855 2847819 .. 2847834 +  -4.6  -3.14404   CGCCGCCACCATGCT              GGCCCA GGCC TGAGCC               TTACGTAGTTGCTGT  47 13
CXD92_RS13860 2849341 .. 2849376 + -13.2  -3.00298   AGCGACTGCCGCGGC    AAAGGGAGCCTGTCCC CGCT GGGACAGGCTCCCGGG     TATGTAGTTACCACG  70 57
CXD92_RS13875 NONE
CXD92_RS13880 2852989 .. 2853007 + -17.4   -5.1971   CACCAGTTTTCTCAT             GGCCGCGC CCA GCGCGGCC             TTTTTGCTTTTTCCT 100 297
        cadR 2857004 .. 2857014 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS13900 2857997 .. 2858036 +  -9.4   -3.5361   CCTGGACAAATACAA  CCTATTGACAGTTCACAC CTAG GTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD92_RS13905 2859171 .. 2859185 +  -2.7  -3.57144   CTTGCTCGGTCATGT               AGGCC GACAG GGCCA               TTTCCAGCTGCAGGG  50 129
CXD92_RS13945 2867262 .. 2867296 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS13965 2871372 .. 2871382 +  -6.8  -3.40878   CGCGCTGTCGGGCAC                 GCTC ACC GAGC                 TCTTGTTCGCCTCGT  56 335
CXD92_RS13985 2877717 .. 2877737 +  -8.1  -2.62263   GATCGTGCAGCATCT            CGCGGGCCG GGC CGGACAGCG            TGATCTCGCCCGACT  48 139
CXD92_RS14060 2902136 .. 2902156 + -15.4  -5.13343   GTCGTTATTATTTGA            GGCGGGGC TGCAT GCCCCGCC            TTTTATTTTGCATTG 100 92
CXD92_RS14065 2902738 .. 2902753 + -10.4  -4.62069   CCAGAACGCAAAAAA              GGAGCC CTAA GGCTCC               TTTTTGCCATGCCGG  93 81
CXD92_RS14095 NONE
CXD92_RS14100 NONE
CXD92_RS14105 2911137 .. 2911163 +   -15  -3.60865   ACCCTGACCCGGCCG         CGCCGGCGCCGC CCC GCGCAGCCGGCG         TTCTGCTTTAGAATC  81 34
CXD92_RS14110 NONE
CXD92_RS14115 2912229 .. 2912245 +  -2.1  -2.64099   AAACAAACCCATCAG              GAGCCCC CAT GCGTCTC              ATTCTGCTCGGACCG  38 108
CXD92_RS14120 2912899 .. 2912957 + -13.8  -3.39895   GCAGAGCTAAACCGC GCCGCG-AGGCCGCCGCGCCGCCCGCGCA GGGG TGCGCGGCCG-CGCG-CGCCCTGCCCGCC TTCATTGCTAGCCAA  77 31
CXD92_RS14125 2913754 .. 2913782 + -18.2  -2.84602   AGTAATCCCTCCCCC        CGACGTGCCGGC TCGAT GCCGGCACGTTG        CTTTGGTACCCTGGC  86 36
        murJ 2915410 .. 2915442 +   -12  -4.20516   AATAGTGAAAATCAC      AACAAAGACCGGCC CTTAC GGCCGGTCTTTGCA      TTTATTGGATCGACA  91 65
CXD92_RS14135 2916624 .. 2916647 +  -6.8  -3.58037   GGGCTTGCAATCCCC          GTCGGAC-TTG ATA CAATGTCTGAC          TTTGCCGAATTCATA  58 74
CXD92_RS14140 2916983 .. 2917000 + -11.3  -5.45802   TACGGCAAGCAGAAA             GGATGCC CGCG GGCATCC              TTTTTGTTTTGGCGC 100 69
CXD92_RS14160 2919691 .. 2919701 +  -2.4   -3.7941   AGCCGATATTGCCGT                 TGGC GCC GCCC                 TTGTTCTCCACGATG  54 342
CXD92_RS14205 NONE
CXD92_RS14210 2929541 .. 2929553 +  -3.3  -3.07233   AAGCCGCCAAGAGCA                TCGGC TAA GCCTA                TATTGCCCATTGTCA  42 18
CXD92_RS14215 2931326 .. 2931345 + -13.6  -5.40072   CCACCCATGCCGGAA            GAAGGCCC TGCG GGGCCTTC             TTTTTTTGCCCGGCG 100 44
        pdxA NONE
CXD92_RS14225 2933871 .. 2933901 + -11.1  -3.06183   CCAGCTGCCCGCACT      G-GCGCGCCAGGCGC CGC GCG-CGGGCGCGCAC      TTCCATCGAGCTGAG  62 459
CXD92_RS14285 2943766 .. 2943784 +  -5.8  -3.14931   CCTTGCCCGGGCCCG             GCGCTGCC ATC GGCCACGC             TTGCTAACGCCTCGA  49 98
CXD92_RS14290 NONE
CXD92_RS14295 2946339 .. 2946373 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  50 191
CXD92_RS14320 2951703 .. 2951721 +   -11  -3.55444   ATTTCGCCCATGCGG             CGCTCGAT CAG GTCGAGCG             TTTCCAGCGTGAAGG  71 424
CXD92_RS14330 2954433 .. 2954467 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS14355 2960771 .. 2960812 + -26.8  -3.54903   GGCGCGTTCCCTTCC GACCCGATGCGTCGCCGGC CCGTT GCCGGC-ACGCATCGGGTC TTATCCATTTTATAT 100 62
CXD92_RS14360 NONE
CXD92_RS14365 2962596 .. 2962611 +  -3.3  -4.28548   GCATGTCGCACCGCT              GAATC CCGCAC GATTC               TTTTCATCACTCCGT  63 24
CXD92_RS14370 2963485 .. 2963510 + -20.5  -4.56597   CCGGGCCTGCATCCC         GCCAAGCCGCC CTCG GGCGGCTTGGC          TTTTTCACCCGGCCG 100 68
CXD92_RS14375 2963680 .. 2963725 +   -28  -5.84381   AGGCCAGCAACAAGG CCAGCAAGAAAAAAGCCGCT CATGGA AGCGGCTTTTTTCTTGCTGG TTTTTTTCTTGCTGG 100 58
CXD92_RS14380 2964917 .. 2964929 +  -3.3  -4.11216   ACCTATTGACAGTTC                ACAGC TAA GCTGG                TTTTCCGAGTCGCGC  59 18
CXD92_RS14385 2966130 .. 2966147 +  -5.5  -3.29144   CTGGCCGACGCCACG             CGACTCT ACGA AGAGGCG              TTCTGACGCCGCTGG  51 2
CXD92_RS14425 NONE
CXD92_RS14430 NONE
CXD92_RS14435 NONE
CXD92_RS14440 NONE
CXD92_RS14445 NONE
CXD92_RS14450 2976108 .. 2976147 +  -6.5  -3.17075   GATGCGCAAGGCGCA GG-CGTGCGATGGCCTGTA TTCG TAC-GGCCATGTCACGGCC  TTGCCTTACGAGCCG  51 275
CXD92_RS14460 2978155 .. 2978165 +  -5.4  -3.25823   CGTTTTCCGAGCTGG                 CTTC CAT GAAG                 TTCATATAGACAGGC  51 6
CXD92_RS14465 NONE
CXD92_RS14470 2980258 .. 2980284 + -10.9  -4.52857   GGCCGCGACGGCTGG        CGCGCCAGGACG AGGC TGTCCTGGC-CG         TTTTCTATGACACGT  95 46
        soxR NONE
CXD92_RS14485 2981937 .. 2981962 +  -5.4  -3.34398   CGTAAGGCAGTATTG         CCGGCTGTATC CCGAT GGTGC-GCCGG         TCTTTGCGCCCGCGC  51 57
CXD92_RS14490 2984324 .. 2984358 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS14505 2986788 .. 2986804 +  -4.3  -3.14132   GACAGGCAGCAATCG              CCGGGCT GTT AGCTCAG              TTGGTAGAGCAGCGG  47 140
CXD92_RS14510 2986876 .. 2986905 + -17.3   -5.0925   CACCATGATTTGTAA       GGCCGTTAGTGAT AGTA GTCACTAACGGCC        TTTTTGCTTTTCGGC 100 36
CXD92_RS14555 NONE
CXD92_RS14560 2993759 .. 2993775 +  -5.8  -3.05596   GAATACGTGATCAGC             GGCGCGG CCGG CC-CGCC              TTCGCTCAGGGCATG  48 332
        panB 2995548 .. 2995563 +  -3.2  -4.07568   TCCTGCAAACCCGCT              CCC-GCG CGC CGTAGGG              TTTTCGCCACAGGCA  59 253
CXD92_RS14575 2997173 .. 2997207 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 256
CXD92_RS14605 3003089 .. 3003108 +   -10  -3.33261   GCACGCTGGCGATGG            CGTCGGCGG CCA CCGCC-ACG            TTGTCGCGGTTCAGG  63 72
CXD92_RS14635 NONE
CXD92_RS14640 NONE
CXD92_RS14645 3011836 .. 3011856 +  -8.9  -3.46602   TTGTACCGAGTAACC            TTGCGCGGG CCG CCTGCGCCA            TTGTGATGTCCACGG  60 84
CXD92_RS14655 NONE
CXD92_RS14660 3014762 .. 3014784 +  -6.9  -3.35679   AGGCATCGACCAGCA           GGCCCTGGT AACGC GCCACGGCC           TTGTGCGTCACGCCG  52 304
CXD92_RS14670 NONE
CXD92_RS14675 3017939 .. 3017961 +  -5.4   -3.7941   ACGAGCTGACGTCGT           GCAGGTCGGC GAT GCGGATCAGC           TTCTTGTAGACCGTG  58 115
CXD92_RS14690 3020822 .. 3020852 +  -6.8  -3.39784   TGGCGCACCAGGCTG      GGGCCGAGCGTGC CGGGAT GC-TGCTCGGCCA       TGTTCTTCAGGCTCC  55 431
        gcvA 3025329 .. 3025371 + -10.5  -3.56092   GGCAGCGTGAGCGCC GCGGCGGCCTGCGCGATGGT CATG GCCACCAT-CAGGTCGCCGC TTTGCGCGATGCTCC  67 412
CXD92_RS14730 3028429 .. 3028467 +  -9.6  -3.14132   CGGATCGGCGATGCC G-CCGACCGCGCGCACCGG CATG CCGGTGCG-GCGG-CGCAC  TTGCTCGGCCAGGCC  59 213
CXD92_RS14740 NONE
CXD92_RS14785 3037679 .. 3037711 +  -3.4  -2.78463   CCACTTCGGCCGGCT     CCATCAGCCGGTC GAACGGCA GGCCG-CTGAGGG      TCTCCTGCCAGCGGT  40 172
CXD92_RS14835 NONE
CXD92_RS14840 3046237 .. 3046247 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 64
CXD92_RS14845 3047389 .. 3047409 +  -2.4  -2.59267   GCCCAGCGTCGAGAT            CAGCACGA CGTAA TCGGGCAG            CTTGGTGTCCTTGCC  38 163
CXD92_RS14860 NONE
CXD92_RS14865 3050755 .. 3050770 + -10.4  -5.86332   ACGAACGAAAAAAAA              CCGGTC GCGC GACCGG               TTTTTTTTGCCTTGC 100 58
CXD92_RS14880 3053499 .. 3053518 +   -15   -4.8622   GCGTGCAATGAAAAA            GGCGGCTC GCAT GAGCCGCC             TTTTTCATTGCCGGC 100 49
CXD92_RS14900 NONE
CXD92_RS14905 3058686 .. 3058714 + -14.6  -5.40072   GCCCGCCATGCAGCC       GCCCCGTTGGACG ACCA CG-CCAGCGGGGC        TTTTTTTCGCCGGCC 100 78
CXD92_RS14910 3060212 .. 3060240 +  -5.2  -3.36569   GCGCACCATGGGCGT       CGTCG-CCGTCGC CCTG GCGGCGGTCAATG        TATTTGGCGGCTTCC  53 231
CXD92_RS14920 3062068 .. 3062080 +  -4.7  -3.55622   TCCAGGCTCCAGGCA                TCGGC CTC GCCGC                TTTCCAGCAGTTCCC  54 334
CXD92_RS14930 3065186 .. 3065196 +  -6.8  -3.31144   CCTATTACGCCACGG                 CGAC GGT GTCG                 TTCTGACCATGGCGA  54 9
CXD92_RS14935 3066580 .. 3066596 +    -5  -3.15544   ACTCCTTCACCATGG              CGCCGC AACCC GAGGCG              TTCATGACGATGGCC  47 489
CXD92_RS14960 3084814 .. 3084851 + -16.4  -3.61398   GCGAGGCGGCCTTGA   TGGCATCGACGGCGAT CTTCAC ATTGCCGTCGGTGCCG    TTCTTGAAACCGACA  85 523
CXD92_RS14980 3088489 .. 3088510 + -18.7  -5.06414   TTCGTCCCGGAATGC           CGGCGCGCC TCAA GGCGCGCCG            TTTTTATTGCGCCAC 100 49
CXD92_RS15010 3092728 .. 3092744 +  -5.7   -3.4277   GCTGGTACATGAACC              CGTGGTC CTT GGCCTCG              TTGTAGGTCTTGCCT  55 128
        chrA 3095541 .. 3095562 +  -3.6  -4.11216   CGGATCGTCGTAGAC           GACGC-GCC ATACC GGCAGCGGC           TTTTCCACGTGGCCC  63 280
CXD92_RS15045 NONE
CXD92_RS15050 NONE
CXD92_RS15055 NONE
CXD92_RS15060 3102573 .. 3102592 +  -2.8  -3.23216   TTCAGCGTCGTCGAC            GCCAT-GCC CGA GGCTATGCC            TTGCTCGTGGTGCGC  46 280
CXD92_RS15070 3104304 .. 3104325 + -18.7  -3.28712   CGCCACAAACGACAA           CCCCCCGGG CAAG CCCGGGGGG            TTGTCGGCGAACCAA  93 70
CXD92_RS15125 3115672 .. 3115683 +  -5.8  -3.01712   GGGTACGGAAGCGGC                TGGC GATG GCCA                 TCTTGGCGCGCGGCC  48 303
CXD92_RS15135 3117980 .. 3117990 +  -4.6   -4.0371   AGGTCCACCATGGCC                 GGCG CCG TGCC                 TTTGTATGGAACATG  63 455
CXD92_RS15165 3121604 .. 3121632 +  -5.3  -3.87373   GCACATTTGGACAAT       TCATTGCGCCCG CCATGA TGGGCGC-ATGG        TTTATCCGCGCTGTC  60 141
CXD92_RS15175 3123850 .. 3123864 +  -3.5  -3.72576   GCGCGCAGGGCCGCT               TCGAC CTGAT GTCGG               TTTGCTCGGGCGCGC  54 348
CXD92_RS15205 3129806 .. 3129820 +  -3.5  -3.94746   GAATGTGCCGGAGGG              CGC-GC ACGC GCAGCG               TTTGCTTGAATCTCA  59 63
CXD92_RS15210 NONE
CXD92_RS15215 3132658 .. 3132672 +  -4.2  -3.14931   GTCGAGCACGGTGTC               GTCGTC GTT GACCAC               TTCATCGAACGTGAA  45 266
CXD92_RS15255 NONE
CXD92_RS15260 3140367 .. 3140378 +  -5.8  -3.78022   CTTCAGTAGCGGTCC                CAGG CCTT CCTG                 TTTCATCCCTCTACC  60 183
CXD92_RS15270 NONE
CXD92_RS15275 NONE
CXD92_RS15280 3143963 .. 3143978 +  -8.2  -3.53444   AGCCGCCGCGCCTCG              GCGTGG ATAT CCGCGC               TTTCGAACGCGGTGA  61 167
CXD92_RS15300 NONE
CXD92_RS15305 NONE
CXD92_RS15310 3149451 .. 3149487 +  -5.1  -3.02144   CGTCATCAGTGTCAG    CATCGGCCGGTTGGT CGACAGC ACCAGCCCGTCTATG    TATTCCAGCCCCTGC  46 127
CXD92_RS15320 3153548 .. 3153576 +  -4.4   -3.2614   AGGCCACCGCGGTGC       CGCG-CGCGGCCG GCAC CATCTGCGTCGCG        TTGGTCTGCAAGGTG  47 226
CXD92_RS15345 3159416 .. 3159451 +   -24  -3.73224   ATTCAGAGCGATCAC    TTCGGCGGGCGCGCCT TGCA GGGCGCGCCCGCCGCA     TTTGGTAACAACTAA 100 47
CXD92_RS15350 NONE
CXD92_RS15355 3163961 .. 3164012 + -18.2  -2.83677   AGGCCGCCTATCGGC GCCATTTGAAATGGCTCGCGCCGAC GAG GTTG-CGGGGGCCATATCAAATGGC TGTGCTGAATTCATT  86 141
CXD92_RS15360 3164722 .. 3164744 + -20.6  -4.65895   TTAGCAGCACCTTAA           GCCGCCTGGC TCC GCCAGGCGGC           TTTTTCCGTCCCGCG 100 57
CXD92_RS15365 3165669 .. 3165706 + -12.5  -2.64155   GCAGCACGGCGCAGG   CGCCGCCCGCCACGCCC GGCA GGGCATGCAGGGCCGCG    TCGATTTCCGCCAGC  62 290
         mpl NONE
CXD92_RS15440 3178568 .. 3178583 +  -2.4  -2.64354   GGGGCGCTCCTGACG              CCGCCG CGCC CGATGG               ATTCTCACTATGTAC  38 72
CXD92_RS15445 3180512 .. 3180531 +  -2.7  -2.76468   CGCCCTAAAATGCAC            GGGTGCG ACGCTC CGCTTCC             TCCTCTTCGATCCTG  40 61
CXD92_RS15450 NONE
CXD92_RS15455 3182308 .. 3182318 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS15460 NONE
CXD92_RS15465 3184228 .. 3184251 +  -5.2  -3.28712   CAGCATCCGCCACGG          TCCAGGCC GAACACCA GGCCCGGA           TTGTCGGGCGAGCCG  49 374
CXD92_RS15490 3188244 .. 3188265 +  -9.3   -4.1891   GTCGCTCAGGCGCTT           GTCGCCGGC CACC GCCAGCGGC            TTTATCTTGCCGGCC  75 332
CXD92_RS15515 3194571 .. 3194599 +  -8.7  -3.51032   GCGGCTTGCCCAGCA        GATACAGGTCGCC GAT GGCGTCCAGGATC        TTGTGCTTCACGAAT  61 307
CXD92_RS15600 3215726 .. 3215736 +  -4.6  -3.30771   CGCCGCCCGTGAAAA                 TCGC ATT GCGG                 TTGTAGAGCATGTGC  49 481
CXD92_RS15615 3218025 .. 3218037 +  -7.7  -2.54523   GATCGGGCCAAAGGG                CGTAC GGC GTACG                TCCCTTCCCGTCTCA  50 43
        hppD 3227215 .. 3227235 +   -14  -3.60151   GCCTGGCGCGAGTAA            GGCCCACC CTCGC GGTGGGCC            TTGTCATTTCGGGCG  78 46
CXD92_RS15675 3231117 .. 3231129 +  -9.1  -3.18681   GAGCACGACCTCGCC                CTGGC CGC GCCAG                TTGATGACCTTGCCC  59 384
CXD92_RS15685 3232841 .. 3232854 +  -5.2  -3.21099   TGCATGAATACTGCG               CGCG AGTTAC CGCG                TTGATGCTAGAGCAG  49 450
CXD92_RS15705 3234794 .. 3234833 +  -9.4   -3.5361   CCTGGACGAATACAA  CCTATTGACAGTTCACAG CTAG CTGTGAAGATTCAATAGG   TTGTATGCATGGTTC  64 4
CXD92_RS15710 3236059 .. 3236074 +  -6.1  -5.24129   TACAGAAAACCAAAC              GGCAC CACCAA GTGCC               TTTTTTGTGCCCGCC  90 220
CXD92_RS15715 3236623 .. 3236637 +  -4.2  -2.94411   GCATGAACTAAGGAG               ACCATG AAT CATGGA               ATTGTTTGACAACCT  44 30
CXD92_RS15720 3238176 .. 3238193 + -14.1  -6.11644   GCCGGCCGGCGCGAA             CCGGGCC CTCG GGCCCGG              TTTTTTTTTGCCTCG 100 63
CXD92_RS15725 NONE
CXD92_RS15730 3240964 .. 3241003 + -26.5  -3.05384   CTGCGCGACTGAGGC  CGCGGCGCCGGCCGCTCG CAGCC CGGGCGGCCGGCGCC-CG  TTCGATCAGGCCGCC 100 29
CXD92_RS15760 3245011 .. 3245033 +  -6.8  -2.53911   GAATGCCAGTTCGGC           CAGCCGGCGG ATG CCGTCGTCGG           TGAATTCCAGCTTCA  44 243
CXD92_RS15790 NONE
CXD92_RS15795 NONE
CXD92_RS15800 3252218 .. 3252274 +  -7.8  -2.91264   AACTCGCCGCCGCCT TGCGGCCCTG-AC-GGCGCTGGGCGCGC TGT GGGCGGCCGGCGCCGGTGCGCATCCGCA TATGTGGATCGACGC  52 15
CXD92_RS15805 NONE
CXD92_RS15810 3253847 .. 3253859 +  -4.7  -3.23637   GACGAATTTTGCACG                CCCGG GTG CCGGA                TTCAATTGATATGTT  49 56
CXD92_RS15815 3256343 .. 3256366 +    -3  -3.85698   GGCGCCGGCGGCAGC          CAGTTGCGGG CGCG CCTGCAACCA           TTTGTCCAGCGCGGC  56 362
CXD92_RS15845 3261898 .. 3261916 + -17.4   -4.4078   TCCCGTGTCGCGAAA             CGCCCCGC CTG GCGGGGCG             TTTTGCTTGGCCGCG 100 48
CXD92_RS15850 3262239 .. 3262253 +    -7  -3.08371   GCAACAACTACTGAG               GGGCGC ACG GCGGCC               TGTCTTGGCCATGTC  52 27
CXD92_RS15855 3263555 .. 3263588 +    -6  -3.34005   ATGAAGCGGGAAAGG     CGAGTACGCGCCGTG CGGAT CATGGTGC-TACGCG     TTGTCCGGCTTCATT  53 223
CXD92_RS15860 NONE
CXD92_RS15865 NONE
        metF 3266338 .. 3266348 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS15875 3267468 .. 3267480 +  -6.2  -3.01924   GAAGCGCTCGAACGC                GGCC AGAAA GGCC                TGTTCGGCGGCGCTC  48 141
CXD92_RS15900 NONE
CXD92_RS15905 3275103 .. 3275123 +    -4  -3.57561   CAAGGGTTCGGGCAT           GTCGC-GGCC CAC GGCCAGC-AC           TTTGAACAGTTCGCC  51 94
CXD92_RS15925 3280384 .. 3280423 + -15.6  -2.64099   TATCCGGGCCGCCCG  CGCGCGGGCGGCC-GCGCT GCT GGCGCTGGCCGGCTGCGCC  ATTCTGCTGGGAGCC  74 277
CXD92_RS15930 3281902 .. 3281915 +  -3.7  -2.62263   GCTGTTCTCGCTGCT               GCCGC TCGA GCCGC                TGCTGTAGGCGCGCT  40 4
CXD92_RS15955 3286526 .. 3286568 + -11.9  -3.18681   CCAGTTCGGCCTGGA CCTGC-GCACGGGTGGC-GGC GTC GCCGGCCGGCCGGGCCGCGGG TTCCTGCGCTTCGCC  64 354
CXD92_RS16030 NONE
CXD92_RS16035 3299379 .. 3299393 +  -3.4  -3.96327   GCAGAAATTCATGGC               GGCCTG CGC CCGGTC               TTTCTCCTCGACCGT  58 202
CXD92_RS16045 NONE
CXD92_RS16050 3302759 .. 3302793 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 280
CXD92_RS16070 3308747 .. 3308784 +  -7.6  -3.03124   GTGGCTGAACCGGAA   CGGCGAGGTTG-CGGCC GGCTG GGCGGGCAACCAAGCCG   TGTTCAAGAATCAGC  53 33
CXD92_RS16075 3311396 .. 3311432 + -12.9  -2.72144   TTTGATGCCCAAGGG    CTGGCGCAGTCCGCCAG GCG CTGGCGGACGGTCCTGG    GTTTCGAAAGAATCG  67 73
CXD92_RS16085 3312865 .. 3312879 +  -4.9  -2.88249   ACACCGCTGCCTGGC               GTGGC CGAGT GCCGC               TATGTGACCAATATC  44 173
CXD92_RS16190 NONE
CXD92_RS16195 3337359 .. 3337369 +  -8.2  -3.53012   CGCATCGATGGGCCC                 GGCC GGC GGCC                 TTTGCGCCGGCCGCG  62 50
CXD92_RS16200 NONE
CXD92_RS16205 3339500 .. 3339510 +  -6.8  -3.85817   AAATGCGGGGCGGCG                 CTGG CCG CCAG                 TTTCTGCGGCACCGT  63 189
CXD92_RS16215 3341802 .. 3341812 +  -2.4  -4.19238   CGCCGTTGGGCATTG                 CGGC CCG GCCA                 TTTTCCGATTCAAAA  62 92
        fahA 3343240 .. 3343267 + -21.4   -4.8622   CTCCGGCTTGCCGAA        GGTGCCTGTCCC AACC GGGACAGGCACC         TTTTTCCTTGCGGGC 100 108
CXD92_RS16250 NONE
CXD92_RS16255 3353203 .. 3353233 +  -3.9  -2.57132   CGCGCTGGCGCAGCA       GGCGCGCGG CCTCGACGAATTC CCGCACGCC       CTTGTCGCGCAGCAG  40 506
CXD92_RS16310 NONE
CXD92_RS16315 NONE
CXD92_RS16320 3367974 .. 3367992 +  -4.4  -2.62184   CCCTCGCGGATGACC             TGGTGCAC CAC GCGCTCCA             TGATCTCGGGCGAGG  40 362
CXD92_RS16330 3371036 .. 3371069 +  -5.1  -3.21099   GATGGTGCCGTGCTG     GATGTTCCCGGTGGC GCTG GCCTGCGGCAACACC      TTCGTGCTCAAGCCG  49 495
CXD92_RS16340 3373930 .. 3373950 +  -3.8  -3.11459   AGGGCGGGCCTGGCC            CGCCCGCG CAACC CGAGGGAG            TTCCATGCTGGTATT  45 46
CXD92_RS16345 NONE
CXD92_RS16350 3376052 .. 3376105 + -15.3  -3.01712   TGGGCGAGGACATCG TCACGGCCA-GCGCGCGGCG-GCGG CGCGAA CTGCGCGCCACGCGCATGGCCATGG TGTTCCAGGAGCCCA  77 291
CXD92_RS16360 3378884 .. 3378894 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS16365 3380128 .. 3380144 +  -2.1  -4.62783   CTTTTAGCCAGTTTC              CGGATGA ATT TCCGCCG              TTTTTCGGCTACGTC  70 255
CXD92_RS16415 3387330 .. 3387370 +   -14  -2.80816   ACCTTGCTGGACCGC GCCTGGGGGCTGGAGGCGC ATTC GCGCCTG-AGCTGCCAGGC  TATCGTGGCTGGCGA  71 268
CXD92_RS16440 NONE
CXD92_RS16445 NONE
CXD92_RS16450 NONE
CXD92_RS16455 3394184 .. 3394211 +  -8.2  -3.78775   ATGACCTTGTCGGCG        TCCTCGCCCGCC AGCG GGCGGCCGCGGC         TTTGCTGGTGGCGCA  67 131
CXD92_RS16530 NONE
CXD92_RS16535 NONE
CXD92_RS16540 3411722 .. 3411736 +  -7.8  -3.30771   GGCCTGGCCATGGCG               CAGGTC GAC GGCCTG               TTCTGCGCCATGTCC  56 163
CXD92_RS16550 NONE
CXD92_RS16555 3414877 .. 3414911 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS16570 3419189 .. 3419211 +  -4.8  -4.67982   GGCCTTATCCGTCTG           GCAGGTCATG GGG TATGGCCTGG           TTTTCTTCGGTGGCA  75 224
CXD92_RS16580 3421281 .. 3421304 + -13.8  -2.54702   TGGGTGCGCACCGGC          GCGCGCTGGC GGTG GCCAGCGAGC           TGCCTTCGCGTCTGT  69 511
CXD92_RS16595 3423944 .. 3423954 +  -8.2  -3.53012   GTGTGGATGGTGACG                 CGGC ACG GCCG                 TTTCAGCGCCCGCAG  61 275
        gloB NONE
CXD92_RS16615 3427251 .. 3427276 +  -3.3  -2.71712   GCGCCCGTCCGCCAA         GCCGCTA AAATTCCTACAA TAGCGGC          CTTTCCGCAAGGCAA  40 64
        fabI 3428124 .. 3428152 +    -6  -3.78419   CCCCGTAGGGGGACT        GGCACCGG CCAAATTCGACCT CCGGTGCC        TTGTATCTTTCCTCC  62 57
CXD92_RS16625 3429379 .. 3429408 + -17.9  -2.62616   CTGTCCCCGCAGGGA       GGGTGCCTGTCCC CGCC GGGACAGGCACAC        TGCTGTACGCCATCG  85 56
CXD92_RS16635 3431101 .. 3431134 +  -8.9  -3.53091   CCTCGATACGGCACG     TGCTGCAACCAGGC GCCGCTG GCCTGGC-GCAGCA     TTTCGCCGGCCAGGT  61 460
CXD92_RS16655 3434872 .. 3434882 +  -4.6  -4.12188   AGACCGTGTGGGGCA                 TCGG CTA CCGG                 TTTTCGCCCTGATGA  62 3
CXD92_RS16660 3436321 .. 3436373 + -14.1  -3.33696   TGCGAAGGCTTGACC CGCCGGCCG-CGCCG-TC-AGGCGCC CGGC GGCGGCAAGAGCGGCACCGGCCGGCG TTCCTTGCCGAACAC  75 28
CXD92_RS16675 3440667 .. 3440704 + -16.9  -3.18274   CCCGACAATCCGCTG   TCGCCGGCCGCC-CTCCG CTT CGGGCCGGCGGCCGGCGC   TTCCATTCCAATCCA  84 85
        minC 3441659 .. 3441677 +  -2.4  -3.86346   GCCTTCATACGCTTT             TTGCTTTA CGA TAACGCGA             TTTGTACGCACATAA  54 87
        minD NONE
        minE 3442946 .. 3442964 + -17.4   -5.1971   CACCAGTTTTCTCAT             GGCCGCGC CCA GCGCGGCC             TTTTTGCTTTTTCCT 100 191
CXD92_RS16740 3453278 .. 3453297 + -10.6  -5.50499   CCGCGCATAAAAAAA            CCGCCGGC AAGG GCCAGCGG             TTTTTTTACCTGTAA 100 49
        uvrA NONE
CXD92_RS16755 NONE
CXD92_RS16760 3461353 .. 3461395 + -14.1  -3.07935   AGGTGCAATACCACT GACT-CCGGTGCCTGTCCCC GCAG GGGGACTGGCACCGGCAAAC TTCCGTGCCTGCCGT  72 24
CXD92_RS16765 3463054 .. 3463069 +  -2.4  -3.01712   CCGGGCTTGCCCAGC              GCGGCG CGGC TGCCGA               TATTGACGACCCGCC  41 437
CXD92_RS16780 3466147 .. 3466181 +  -5.4  -3.53811   GCCTTGCTCGCCGCC     GCGCCTGCCGCCTGAC CAT GTCCGCCGCCCGGCTC     TTTGCCCGCAGTCCC  54 11
CXD92_RS16785 3467400 .. 3467424 +  -9.1  -3.01712   GCTTCGGACAGGTCG          CCGGCGCGCAG CGC CAGCGGGTCGG          TCTTGCCGCCGGCGC  55 524
CXD92_RS16795 NONE
CXD92_RS16800 3470101 .. 3470118 +  -2.6  -3.05463   CGCGGGCGCGGCGTT             GGCGGT ACACTG ACAGCC              TTCCATCCAGCCGGT  41 52
        pdxH NONE
CXD92_RS16810 NONE
CXD92_RS16815 NONE
        purU 3473387 .. 3473401 +  -5.6  -3.05384   CGAAATGGCGCAAGG               CCGCCT GCA AGGCCG               TTGCCTGCAGGGACG  46 65
CXD92_RS16845 3479236 .. 3479260 + -12.8  -3.65902   GCAAGTGCAGTTTCG          CGCCACGCGC ATCCG GCGCGTCGCG          TTTCACTGGCATCGC  77 90
        apaG 3485508 .. 3485538 + -10.3  -4.13945   CATGCCGCGTACACT       GCACTGAGCCGGG CTCCT CCCGGCACGGTGA       TTTTCCGATCCGCAT  78 19
CXD92_RS16885 NONE
CXD92_RS16890 3487996 .. 3488020 +  -3.4  -3.08032   GGCAACTCATCGAAG         GGGCCTCGCGC AATT GAGCG-GGCCG          TCGTTTTCAGGAGCA  44 9
CXD92_RS16895 NONE
CXD92_RS16900 3490025 .. 3490059 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 207
CXD92_RS16920 3493527 .. 3493541 + -11.4  -3.57144   CACGGTGGCCAGCGC               CAGGGC CTC GCCCTG               TTTGCGCGTGCGCAC  71 267
CXD92_RS16930 3495926 .. 3495945 + -16.4  -3.75153   CCGCCCGATTGCCGA            CGCCGCGC GCAT GCGCGGCG             TTTCCATTGGCGCGC  88 81
CXD92_RS16950 3499307 .. 3499319 +  -3.3  -3.04792   ATTGATGCTGCGCAA                GCGCT CGT AGCGA                TATTAACCATCGTGA  42 16
CXD92_RS16955 3500285 .. 3500305 + -14.7  -2.52676   ATCCCAAATTTTCGG            CGTCCGCCA TGG TGGCGGGCG            TCCGTTAGCAAGATC  71 40
CXD92_RS16960 NONE
CXD92_RS16965 NONE
CXD92_RS16970 NONE
CXD92_RS16975 3503407 .. 3503445 + -12.2  -3.53012   GTGCCGCCCATCCTA   CGGTAGGGCGGGGACAGC CCG GCTGAACCCGCCAAGCCG   TTTCAACAGGAAAGC  74 67
CXD92_RS16980 NONE
        atpD NONE
CXD92_RS16990 3506277 .. 3506304 + -18.6  -2.91924   CCGCCGCGTCAGGCA        GACAAAGGCGAC TTCG GTCGCCTTTGTC         GTTTCTGGCGCATCC  89 58
CXD92_RS16995 3507360 .. 3507389 +  -2.2  -3.09581   CCAGGGCAGTAAAAT       CACGGCT-TCC GATCACCAA GGATAGTCGTG       TCTGTTGCCCCTTTG  42 74
CXD92_RS17000 3508655 .. 3508672 +  -4.1  -3.60048   GGCACGACCCTGAAA             GCTCACA CCCT TGTTAGC              GTTTTTTCCCCAAAG  51 217
CXD92_RS17005 3510874 .. 3510900 +  -5.7  -2.62184   CGCTGGAGATCTGAG        CGGGGCCG-GCG CCGG CGCTCGAACCCG         TACTCTGACCGAACA  44 27
CXD92_RS17010 3513019 .. 3513029 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS17015 3514097 .. 3514138 +  -8.5  -3.14132   GGCGTTGCGGAGGGG GGAACAAGGTGCCTGTCCC CACG GGGACAGGCACCCACGCCC  TTGGTGCAGGGACAG  56 89
CXD92_RS17065 3525247 .. 3525259 +  -9.1  -3.33696   GGCGCGGTCGGCCTG                GCGCA GCA TGCGC                TTGCTTACGCGCAGC  59 219
CXD92_RS17080 3527642 .. 3527656 +  -2.7  -4.21607   CGCATCTGACGCCGC               GCGGG CCCAT CCCAC               TTTATATTCCCTCGA  63 32
CXD92_RS17085 3528824 .. 3528838 +  -3.4  -3.78934   CCCTCAAGGCGTACG               CGTAGC GCA GCCGCG               TTGTTGTGCGCGCCG  56 21
CXD92_RS17100 3532261 .. 3532274 +  -2.3  -3.07935   GGTACAATGTCGCCT               CTTCG CGCC CGTAG                TTCAATGGATAGAAT  41 184
CXD92_RS17105 3532325 .. 3532340 +  -4.6  -3.53224   ATACAGGTTCGATTC              CTGTCG GGCG CGCCAG               TTTCCCAAGGCCCTA  52 11
CXD92_RS17110 3533428 .. 3533438 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS17115 3534585 .. 3534607 +  -5.5  -3.15579   CTGCCCATGCGCCGT          GGCG-GCGTC GGCC GGCGTGCGCC           TTGCTCCCCGGTTGC  49 168
CXD92_RS17120 NONE
CXD92_RS17125 NONE
CXD92_RS17130 3538120 .. 3538156 + -10.9  -3.15544   CGGGCCACTGCGCCT   GGGCGGCGCAGTCGCGC ACGAA GC-CGA-TGCGCCGCGC   TTCGTCGGCGTCGAA  64 217
CXD92_RS17150 3541504 .. 3541556 + -27.1  -3.02144   CTGGGCCGCGCCCAA CGCCGGCTGAAGCACGGCGG-CGC GGGCTG GCGGCCGCCGCGCTTCAGGCGGCG TCTTCGAGCGCCTGG 100 16
CXD92_RS17165 NONE
CXD92_RS17170 3546086 .. 3546115 + -11.3  -2.62263   CGGACCTGTTTCCCG       ACGCCGGCCAGCG GGTG CGCTGGATGGCGC        TGGTGTCGGCGACGT  59 509
CXD92_RS17180 3548381 .. 3548433 +  -9.2  -3.04501   GCGGTATTCGGGCTT GCC-C-TGCAGTAGCAGCCGCACGCG CACGC CGCGCGCGGCGGC--CTGCATGAGGC TCTTGCGGAATTGAT  55 403
CXD92_RS17235 NONE
CXD92_RS17240 NONE
        lptC NONE
        lptA NONE
        lptB 3563847 .. 3563862 +  -3.2  -3.66288   TCAAACGTACACAAT              CTTGCG CTAG CGCAAC               TTGTATTGGCCAATA  53 108
CXD92_RS17265 NONE
CXD92_RS17270 3566118 .. 3566130 +  -4.7  -2.71144   CACGTCCAGCGGCGT                GACCG CGC CGGCC                TGGTTGCCCCAGCTG  43 127
        rapZ NONE
CXD92_RS17290 3570141 .. 3570151 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS17295 3571571 .. 3571605 +   -10  -3.41229   CCGGTTGCGCCGGGT    CCTGCTGCGCCTCGC CGCTGA GCGA-GCGCGCCAGG     TTCTGCTCGAACTAT  65 441
CXD92_RS17355 3582570 .. 3582591 +  -7.3  -4.61873   CCACCAAGAATTCGA           TGCCCAG CCCTTGCA CTGGGCA            TTTTCATTTGTGCGC  79 35
CXD92_RS17405 NONE
CXD92_RS17410 3598052 .. 3598107 +  -7.4  -4.18197   CGTCCAGCGTGATTT CCACGATGGCCGTCAGCGTGCTGCCCA CCT TGGCCGGCGCGACGATGGCCACC-TGC TTTTCGATCACGCCT  73 304
        glmS 3600570 .. 3600608 +  -8.1  -2.56715   GCAGGCGGGCGATAT  CCATCGG-CGCG-CGCTGC ACG GCCTTGTCGCGCCCGATGG  TGCATTCGTCCAGGT  48 330
CXD92_RS17440 NONE
CXD92_RS17445 3606808 .. 3606862 + -20.2  -2.50779   TGACAGTAGGCGGCC CAGGCTGGCGCGCATGCGTCGCGGCAA GGCC TTGCCGCGACGC--GC-CGCCGGCATG CTGTTGGCTTGTCAT  95 38
CXD92_RS17450 3608311 .. 3608322 +  -7.2  -3.51934   ACCACATCGACCGCC                GCGC TCCA GCGC                 TCTTTCTGCAGGGGC  58 449
CXD92_RS17465 NONE
CXD92_RS17470 NONE
        argE 3612951 .. 3613000 +    -2  -3.50133   GGTAGTGGTGATGTA CCCCCCCGTCACGAACGCCGGGCT TTCG GGTCCGG--TCCATGACGGTGGCG CTTTTTCTACAACTA  48 74
CXD92_RS17480 3614061 .. 3614085 +   -20   -3.3514   ATCGACTGATCGCGG          CGGGCGCCCG CGGCC CGGGCGCCCG          TTGTGCCGTGTCGGT 100 32
CXD92_RS17485 3615402 .. 3615419 +  -5.5  -2.71712   CAGAAGAACATCATT             TCCAAGG CCAT CCTGGGA              CTTTGAGCGAGAGGC  45 2
CXD92_RS17490 3616711 .. 3616730 +  -3.4  -3.65812   TCAGTTCGGGCTTGG            CGTCGTAC AGGT GGCCGACG             TTGTGTTCGGCGGGG  51 167
CXD92_RS17505 3620644 .. 3620654 +  -8.2  -3.35813   TCGGCAACTTCTTCG                 GCGC CGA GCGC                 TTCGTTCCCATCACC  60 176
CXD92_RS17515 NONE
CXD92_RS17520 3622350 .. 3622384 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS17535 3625753 .. 3625787 +  -8.5  -2.71364   CCGCGTAGAGCTCGC    GGCTGATCACGCC-CC GGGT GGCGGCGTGCTCGGCG     TACTTGGCGCCCTGC  52 504
CXD92_RS17585 NONE
CXD92_RS17590 NONE
CXD92_RS17595 3637511 .. 3637527 + -15.1  -5.75945   TTCCGTTTTCCTCCT              GCCGCGC TCT GCGCGGC              TTTTTTTTGGGGCGT 100 55
CXD92_RS17600 NONE
CXD92_RS17605 NONE
CXD92_RS17610 NONE
CXD92_RS17615 NONE
CXD92_RS17620 NONE
CXD92_RS17625 3644399 .. 3644435 +  -9.9  -3.69395   GGGCAGCGGCCGCCG    CAGCACGGTGGCCGGCG CGG CGCTGGCCAACGCGGCG    TTGTTCCATGGTCGA  70 303
CXD92_RS17635 NONE
CXD92_RS17640 NONE
CXD92_RS17645 NONE
CXD92_RS17650 NONE
        lpdA NONE
CXD92_RS17660 3652529 .. 3652550 +  -4.3   -2.5474   GGCCTGCGCCAGCAG           CC-GTTCGGC GTT GCCGTGCAGG           ATCTTCTCCATCGCG  42 103
CXD92_RS17680 3657157 .. 3657190 +  -7.3  -3.65902   GTCAGCGGGTGCCTG     TCCCCCGTGCGGG GACAGGCA CCCGGGTGGGGGG      TTTACATGCGCTCGA  61 50
CXD92_RS17690 3659484 .. 3659522 +   -11  -3.20723   TGCCCGCTGCCGATG  ATGC-CCACCAGCGGCG CGAACA CGCCGGTGGTGGCGCAG   TTGAGTTCCTCGACA  64 224
CXD92_RS17715 NONE
        grxC NONE
        secB NONE
CXD92_RS17730 NONE
CXD92_RS17735 3667707 .. 3667744 + -13.3  -2.79183   CGCGAAGATGCGCGG   CGCAGCCGC-GCCGGTGG CCG CCAGCGCCTGCGGCAGCG   TGTCGTGCACCTGCA  67 293
CXD92_RS17750 3669896 .. 3669908 +  -9.1  -4.09685   GGTGTCCTGGACGCC                CTGGC CGC GCCAG                TTTTGCGCCATGGAC  72 173
CXD92_RS17805 NONE
CXD92_RS17810 NONE
CXD92_RS17815 NONE
CXD92_RS17820 3685749 .. 3685799 +  -8.1  -4.32857   GAGGACGGGCTCCCA GGGTTCGGCAGGTGCCTGTCTCC CGTGC GGGGACAGGCACCTGAGTGTCAC TTTGTCTTTGCCAGC  77 49
CXD92_RS17855 3692163 .. 3692190 +  -6.2  -3.17714   GCGGCTGTACTGATT        GTTGGCGTCGAC CAGC GTCGACAGCAGC         TTCATGAAGATTTCG  50 69
CXD92_RS17895 3701615 .. 3701627 +  -7.7  -3.61398   CAGCGCGATCGTGCC                CGTCA GGT TGACG                TTCTTGGGAAACCGG  60 299
CXD92_RS17905 NONE
CXD92_RS17910 NONE
CXD92_RS17915 3704265 .. 3704275 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS17925 NONE
CXD92_RS17935 NONE
CXD92_RS17940 3707531 .. 3707573 + -14.2  -3.33696   CATGAAGCACTGATG CGGTACG--GGGCGG-CGGCC CGCA GGCCGTCCGCCCCGCGCACCG TTCATTCCAGGCGGA  75 28
CXD92_RS17955 3710902 .. 3710926 + -14.9  -2.90075   CGCCGGTATCGATTT          CGCTGGCGGCC TGA GGCCGCCGGCA          TATGGTTCGAACGCC  73 12
CXD92_RS17960 3712484 .. 3712498 +  -2.7  -3.72576   AGGCCTGGCCGGACA               GCGGC AACGG GCCGA               TTTCCTGCAGCAAGG  53 464
        kynU NONE
CXD92_RS17990 NONE
CXD92_RS17995 NONE
CXD92_RS18000 3718493 .. 3718520 +  -3.2  -3.54424   CCCGTTCTTGATGTC        CGCGGC-GCGCGC GCC GCGCCCTGACCCG        TTTCCGACCGTCCCA  49 49
CXD92_RS18005 3719741 .. 3719755 +    -7  -2.62983   CGAAGCGCGCCAGCA               GCGCCG GTT CGACGC               TGATCTCGGCCTGCC  48 293
CXD92_RS18030 3722750 .. 3722777 + -19.2  -3.02324   GCGCCGTGTTGATTC        GGTGCCTGTCCC GACA GGGACGGGCACC         TGTGCTTTCGATCAG 100 57
CXD92_RS18045 3725924 .. 3725965 +  -6.5  -3.11634   CCGGCCGAATCGCTG TCGGTGCCGGTG-AGCGATC TGT GATCGGTGCGCCTGCACGGG TTCCGTCATCTGGGG  51 2
CXD92_RS18050 3727111 .. 3727161 + -18.9   -3.6579   GAGCGATCGACAGGG CGGCGGCGCCTGGCCGATGGCAGC CGGC GCCGCCGCCGGCCAGGCGG-GCTG TTGTTAGAATCCCTT  95 39
CXD92_RS18055 3728022 .. 3728056 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS18070 NONE
        rocF 3731202 .. 3731212 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 80
CXD92_RS18080 3732371 .. 3732385 +    -7  -3.41693   GCCCGATTTGGCGTA               GCCGGC CAC GCCCGC               TTCGTTCATGGTGGG  58 180
CXD92_RS18145 3748138 .. 3748164 +  -2.1  -3.61178   CCCTGGCTGCAGGCG         TTCCGGCCTGC CGTCC GCTGACCCGAA         TTTCCGATCCATCCG  48 5
CXD92_RS18150 3749376 .. 3749390 +  -2.7  -4.07568   GCAATACGCTATGCT               CGACG CGCGC CGCCG               TTTTCGCCGGCGCAG  59 70
CXD92_RS18155 3749831 .. 3749855 +   -15  -4.57073   GTCCACCCATGAAAA         CCCCGCCAGGC CTGC GCC-GGCGGGG          TTTTTCACAAGGGTG 100 49
CXD92_RS18170 3752318 .. 3752328 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 71
CXD92_RS18175 NONE
CXD92_RS18180 3754006 .. 3754022 + -10.8  -5.10497   GGCCGTAGTTCAACA              GCCCGC CTCGA GCGGGC              TTTTTTGCGTCGGTT 100 47
CXD92_RS18185 3754428 .. 3754438 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS18195 3755431 .. 3755476 +    -6  -2.89564   TACAACCTATTGACA GTTCACACCTAACCCCCACC CGCCCC GGTAGGGGCTAGGAGATAAC TGTGTCCGATACCAA  48 14
CXD92_RS18200 3756034 .. 3756044 +  -2.4  -3.39895   GTGCAGGTAATGGCC                 CAGC TCG GCGG                 TTCGTTCATGAAGCA  46 114
CXD92_RS18210 NONE
CXD92_RS18215 NONE
CXD92_RS18220 NONE
CXD92_RS18225 3758377 .. 3758391 + -12.8  -3.02511   CCGCCTGATCTCCCT               GGGCGG CGC CCGCCC               TATTACCCACGTAGC  67 33
CXD92_RS18230 NONE
CXD92_RS18235 NONE
CXD92_RS18240 NONE
CXD92_RS18245 NONE
CXD92_RS18250 3761221 .. 3761231 +  -8.2  -3.54424   CAGCAGCTCGCCTGA                 CCGC ATG GCGG                 TTTCGAGGGATAGCA  63 406
CXD92_RS18270 3766227 .. 3766255 +  -4.4  -3.44622   ACTTCGACCGATTCC        CCGCGCTGGTTG GTCAG CGGCCAGCGCAC        TTCGTTCTGCGGGTC  49 329
CXD92_RS18285 3768457 .. 3768476 + -16.4    -3.767   CCAGGACGAAAAAAA            CGGCGCCC CGCA GGGCGCCG             TTTCGTGGCTGGCTC  91 219
        dnaA NONE
CXD92_RS18315 3774087 .. 3774100 +  -2.3  -5.03145   CGCGCGCGAACGGTG               TGGCC GTGA GGCTG                TTTTTTAAGGCGTTA  79 81
        gyrB 3776607 .. 3776628 + -13.7   -4.4078   CGTCGTATGCCGAAA           GGGGCTGCC GTGA GGCAGCCTC            TTTTGCTTGGGGGCG 100 53
CXD92_RS18330 NONE
CXD92_RS18335 3780390 .. 3780444 +  -6.3  -3.76759   CCTGCAGGCGTGCGC GAGGGGCGGCGTAT-ACTGGCTCTCGC CGC GCGAAGGCCGGCCAT-CGCCGTGCCGC TTTCCTGACCTTCAT  62 369
CXD92_RS18345 3781682 .. 3781732 +  -6.3  -3.44848   GCAAAATCTGCAAAG CGGG-CTT-GGCTACATTGCGTTC ACTGGA GATCGCA-TGAAGCCCAAGACCCG TCTTTACTACGCCGA  55 79
CXD92_RS18350 3782576 .. 3782589 +  -9.5  -3.26471   GCGTTGCAGGCCCGC               CCGGG CCGG CCCGG                TTACTATGGCCGTAG  61 40
CXD92_RS18360 3785530 .. 3785559 +  -8.7  -3.09681   ATGATGCAGTGCAAA       TATTACGTTTACG TAAA CGTAAACGTAAAG        TTGAGTCGGGTTTTC  56 487
CXD92_RS18375 3787323 .. 3787357 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 218
CXD92_RS18395 3792247 .. 3792260 +  -3.1  -2.79796   CATCAACGCCCCACG               GGTAT GCCC ATGCC                TATCATCGAATCCCG  40 117
CXD92_RS18400 NONE
CXD92_RS18405 3795927 .. 3795965 +  -6.7  -3.14931   CGCTGATCGAAGTGA  AG-TGA-ATGACGCCGGGC GCG GCCCGGCGTCGGGTCAGCC  TTGCTCCGGCGTGAC  52 21
CXD92_RS18420 3798733 .. 3798770 +    -9  -2.70932   TGCCCAGCGCCGGCG   CGGGCGCGCCG-GGCTC CACCC GCGCCACGCCGTGCTCG   TCGTTGGCGGCGAGA  52 188
CXD92_RS18430 3800951 .. 3800963 +  -6.2  -2.64155   CGTCCCGACTCCAAT                GCGC CAATC GCGC                TGCCTTTCCGCCAGG  46 70
CXD92_RS18435 3803088 .. 3803117 + -20.9  -3.29144   CGGGCGCCGACGCAA       TGCACAACCCACC GCAA GGTGGGTTGTGCA        TTCTGGACGCGGTCG 100 59
CXD92_RS18440 3805556 .. 3805575 +  -3.4  -4.07568   GAAAACGTGAAGACC            GCGCGCAG CGCA CTGCCCCC             TTTTACAGAGCCGCG  59 87
CXD92_RS18445 3806245 .. 3806280 + -16.8  -2.70525   GATGCGGCCGCGCCA    GACATGGCGCGCCGGC CCGT GCTGGCGCGCCATCGC     ATTGATTTCCGGAAC  80 39
CXD92_RS18460 3812548 .. 3812570 +  -5.4  -3.50853   GCACCGCGCGGTCCA           CGCGACCGAC GCG GCCAGTTGCG           TTATCGTTGCCGCAA  54 102
CXD92_RS18465 3813672 .. 3813682 +  -8.2  -2.82635   GCGATTCGTGCGCAA                 GGCC CGG GGCC                 TGTGATGATCGAGCT  54 10
CXD92_RS18470 NONE
CXD92_RS18475 NONE
CXD92_RS18480 3816099 .. 3816120 +  -3.5  -3.64822   AGTTCTGAGCTTGCC           CGACCCGCG AGGC TGCGCGCCG            TTTCCCTGCAGGACT  54 33
CXD92_RS18485 NONE
CXD92_RS18490 3818826 .. 3818873 +  -2.7  -3.02511   TGGCGGTGGACAACT CC-TGGATGTTCATCAGCACCGA CGCG TCGCCGCTGACGCACA-CCACGG TCTTGCCGGGATGCG  41 467
CXD92_RS18500 3820972 .. 3820988 +  -5.7  -3.28712   GATCGCGCGCCAGCG              CGGCCAG CGG CAGGTCG              TTCTCGGCCAGGCCG  52 137
CXD92_RS18510 3822678 .. 3822708 +  -8.9  -3.21063   TGTGCCGGCACTTTC      CCGC-CAGACGGGC GCTC GCGCGCCTGCGCGG       TATTGCGTTTGGCTG  56 299
CXD92_RS18515 3823715 .. 3823725 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 270
CXD92_RS18525 3824766 .. 3824814 +  -9.7  -3.03159   CGGCGCACGTCCTCT TCGGCG-CGGCC-GCTGCGCGCCAC GTA GTCG-GC-CAGCTGGTCGGCGCCGA TGTTGCCCACGTTGA  59 62
CXD92_RS18535 NONE
CXD92_RS18540 3831637 .. 3831659 +  -8.4  -4.05714   CGCGGCTGAGCCCGC          GC-CGCCGG CCAGCC CCGGCGTGC           TTTATCATTGGCCCT  72 32
CXD92_RS18545 NONE
        thiD 3833421 .. 3833431 +  -3.2  -4.21462   GTTGACTCCCCTATA                 TTGG TTT CCGA                 TTTTCCGTCATGAAT  63 67
CXD92_RS18555 NONE
CXD92_RS18560 NONE
CXD92_RS18565 3835665 .. 3835705 +  -6.8  -3.05268   CGTGAAAAGAAGTCA CCGCGTCGACGCAGC CCAGGGCCGCCA GCAGCG-CGGCGCGG  TCTTGCACCTGATTG  48 246
CXD92_RS18575 3837323 .. 3837336 +  -3.7  -2.87132   GCGCCCTGCGACCCG               GGCGC GCCC GCGCA                TCTGTAACAGGGACG  43 97
CXD92_RS18580 NONE
CXD92_RS18585 3839464 .. 3839495 +  -4.4  -3.72576   CAGGGGGGCGCACGG      CGGCGCGGCGC TACGCTACACT G-GCCGCGCTG      TTTCGTCCGCGAGCG  55 92
CXD92_RS18590 3840875 .. 3840909 +  -7.8  -2.58999   GCGTAAGCCCACTCA     CGCAAGGCCGACTG GATGAAG CGTTCGGCCTTGCC     ATTGGTCTGTGGGCG  48 191
CXD92_RS18605 NONE
CXD92_RS18610 NONE
        fusA NONE
         tuf 3846828 .. 3846853 + -11.1  -4.62203   AGCAGTACCCAACCA         GTGAGGGCGGT AGTC GCCGCCTTCGC          TTTTCGTTCTTTAGG 100 41
CXD92_RS18625 3847225 .. 3847264 + -20.2  -3.53091   TGTGGCGCAGCTCGT  GAAAAATGGCCGCATTCC CCCG GGAGTGCGGCCATTTTGC   TTTGGCGCGACAGCT 100 63
CXD92_RS18630 NONE
CXD92_RS18635 NONE
CXD92_RS18640 NONE
CXD92_RS18645 NONE
CXD92_RS18650 NONE
CXD92_RS18655 NONE
CXD92_RS18660 NONE
CXD92_RS18665 NONE
CXD92_RS18670 NONE
CXD92_RS18675 3852348 .. 3852370 + -17.8  -5.84381   CGCTCCGGCATGAAA           CGGCAAGAGC CTG GCTCTTGCCG           TTTTTTTGTTCATCG 100 70
CXD92_RS18695 NONE
CXD92_RS18700 3856445 .. 3856456 +  -4.4  -2.90992   CAAGGCGTAAGGGGC                GACA GACA TGTC                 TCGTTTGCAAGAGTT  44 31
CXD92_RS18705 NONE
CXD92_RS18710 NONE
CXD92_RS18715 NONE
CXD92_RS18720 NONE
CXD92_RS18725 NONE
CXD92_RS18730 NONE
CXD92_RS18735 NONE
CXD92_RS18740 NONE
        secY NONE
CXD92_RS18750 NONE
CXD92_RS18755 3861541 .. 3861560 +  -2.8  -3.08812   GCGTCAAGGCTAACC            CAGTTAGCG GTA CGC-AACGG            ATTTATTCAAGGAAC  44 28
CXD92_RS18760 NONE
CXD92_RS18765 3862340 .. 3862355 +  -4.6  -2.87344   ACAACGGCTGCCGTC              CGCCGA AGCG TCGTCG               TATCTAAAGGGAATC  44 3
CXD92_RS18770 3863070 .. 3863099 + -14.3  -3.59979   GCCTCACCCGCGCCA       GCCCGCTTTCGCCA TTT TGGCG-GGGCGGGC       TTTGCGGTAGAAACG  78 98
CXD92_RS18775 3864208 .. 3864236 + -21.7  -2.84218   CCGTAAGCAGTCAAG        CGCGGTGGGCGCG CCA TGCGCCCGCCGCG        ATGTTTTCATGCATC 100 35
CXD92_RS18780 3864773 .. 3864802 + -23.7  -4.56597   GCAGCGCGGAAAGCG       GCAAGGGCGGGTC TTCG GACCCGCCCTTGC        TTTTTGCGGCGCGCG 100 46
CXD92_RS18790 NONE
        dsbD 3867635 .. 3867688 +  -3.1  -3.04144   GCTCCTGACGTTGCT TCGTATC-GCCTCGGGCGCGC-CCG AGGCGA TGGCGTGGGCGAGAGGCTGGTACGA TGTTGCCCATACCAG  42 33
CXD92_RS18800 3868887 .. 3868897 +  -8.2  -2.70932   AGGCGAAGGTCGGCA                 CGCG GAA CGCG                 TCCTTGACCCGGCGC  52 207
CXD92_RS18815 3871350 .. 3871376 +  -6.4  -5.14563   CCGTTGTCTATGAGG         GGGGGGAAGC CGATTGC GCGGCCCCCC         TTTTTTCATGAACGC  90 112
CXD92_RS18820 NONE
        ccsB 3874840 .. 3874869 + -22.3  -3.54459   GCGCCGCCCTTCAAA       GACAATGCCCCGC AGAT GCGGGGCATTGTC        TTTGGCAGGCCTTGC 100 44
        cyaY 3877212 .. 3877265 + -17.3  -2.80816   CGACGTCGCTGCGCT TG-AGCGTGGCGCGGGCGCGGGCGGC GGT GCCGCTGGTGGCCACGCCACGCAGCA TATCGTCCATGACGA  78 513
CXD92_RS18850 NONE
CXD92_RS18855 NONE
CXD92_RS18860 3882296 .. 3882351 + -14.6  -5.14965   TTCGCCGTGCTTTTA TTCGCCGGCTCCGCGGCAGTCCAGGGG CAT CTGCTG-ACGGCAACGGGGCCGGCGGA TTTTTTCGTCCGCGT 100 120
CXD92_RS18875 3887405 .. 3887423 +   -16  -3.44848   GCTTCACCCAGTATG             CGCCGGTC ACC GACCGGCG             TGTTTCATGAAGCCG  82 142
         ssb 3888053 .. 3888068 + -10.4  -5.78622   CGCTGGATGCGAAAG              CCCTGC CCAG GCAGGG               TTTTTTTTCGCCTGG 100 57
CXD92_RS18885 NONE
CXD92_RS18890 3890894 .. 3890906 +  -4.8  -3.32844   GGGCTGGGCCGGGCC                GCGA TCGAT TCGC                TTATCCGCTGACCGC  49 2
CXD92_RS18895 NONE
CXD92_RS18900 NONE
CXD92_RS18905 NONE
CXD92_RS18910 3893776 .. 3893818 +  -7.4  -2.79796   GCCAGCATATGGGGC ACCTGCACCGCCACGTCGCG CGT CACGCCCAGGCGTTGCAGGG TGTCCTGCAATACGC  49 284
CXD92_RS18920 NONE
CXD92_RS18925 3897362 .. 3897392 +  -3.2  -2.63301   GGATCTTTCCTGCCA       GCAGTGTGTCTATG TAC TACATTCACACTGC       TACTCTCAGAATGTC  39 137
CXD92_RS18930 NONE
CXD92_RS18935 3899407 .. 3899430 + -17.4  -3.28712   GCCCCGCAGCGGGGC          GCGGCTGGCC GCAA GGCCGGCCGC           TTGTCGCCCGCACGC  86 59
CXD92_RS18940 NONE
CXD92_RS18945 3901549 .. 3901572 + -17.4  -3.97331   GACACGATTGTCCTG          CCGGCGGGCG AGGC TGCCCGCCGG           TTCTTTGCCTGGATT  95 44
CXD92_RS18950 NONE
CXD92_RS18955 NONE
CXD92_RS18960 3904746 .. 3904763 +  -9.9  -3.72576   TCATGATTTCCTCTT             TTCGCAC GGAC GTGCGAA              TTTAATCGAAAAAAA  71 284
CXD92_RS19005 3913314 .. 3913329 +  -4.6  -2.53382   CCGCCGATTGACAAG              CCTGGC CGGC GCTGGG               TAGATTGCGCCTACT  42 30
CXD92_RS19010 3914438 .. 3914476 + -10.9  -3.73224   AGCGGGCGCATACCT  CGCTTGAAGGCGGCGGCC GCAT GGCCGCCGTCG-CAGGGG   TTTCGTACCCCATCG  73 39
CXD92_RS19045 3919380 .. 3919399 +  -4.8  -3.35679   CCTGGCCGAAGGAGC            GGCCTGAG GCGC CGCCGGCC             TTCTCCATCCACGAA  51 19
CXD92_RS19055 NONE
CXD92_RS19060 3922539 .. 3922578 + -13.5  -2.78715   ACTGAGGCTGCGCGA TCGCCC-GC-CCGCCGCGC GTGC GCGCGGCGCCGCTGGGCGC  TATAATGCGCAACTT  67 36
CXD92_RS19065 3923152 .. 3923179 +  -8.4  -3.06831   AGACCTCCTCGAGTG        GCGCCG-TGGTGT CGA ACGCCATCCGCGC        TTGCGTGAACGTTGA  55 477
CXD92_RS19080 3925152 .. 3925183 +   -13  -2.89668   CATCCCCGACCAGCT      GACCGACTGAGCGC CGGC GCGCTCAGTCCATC       TGTATCCCGCTCTTG  69 16
CXD92_RS19135 3936847 .. 3936859 +  -5.5  -3.55622   ACCTCGCGGTGCACC                GCGTC CTC GATGC                TTTCGCCGACTTCGA  54 315
CXD92_RS19160 3941747 .. 3941759 +  -6.9   -3.7456   GCCCGAGAACGTGGC                CGGCG GCT TGCCG                TATTTCTTGGTGTAG  61 272
CXD92_RS19205 3951122 .. 3951137 + -10.4  -2.57132   TCGCCGGCAGCAAAC              TGCCGC TGGC GCGGCA               ATTCTAGGCGGCGGG  57 3
CXD92_RS19210 3952186 .. 3952196 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS19215 3953380 .. 3953399 +  -5.6  -3.90112   CACGGCGCACAGGAC            GCCGCGGCC GTC GGCCA-GGC            TTTCCTTCAGGCCGC  60 205
CXD92_RS19250 3960636 .. 3960659 +  -9.4   -3.1372   AGGCCTTGATGTCGT          GCGCCAGCGC TTCG GCGCCGGCGG           TATTGGTGGCCAGTA  59 220
CXD92_RS19280 3964887 .. 3964904 + -12.7  -3.21218   CTGCCGGCGAACGAA             TGCCCCC TTGC GGGGGCA              TTCGTCGTCAAGGCT  69 86
CXD92_RS19310 3970342 .. 3970384 +   -14  -3.23853   CGCCGGCGCCGAATC CTCCGAGGCCGTGCTGGCGG CGG CCGCCGCCGCGGCTTGCGAG TATTGCTTCCACACC  75 147
CXD92_RS19320 3974229 .. 3974276 +  -6.1  -4.63218   GCGGTCTGTCTTGCA TGCGCGG-GCGCCG-CGTACGGC GTCA GGCGGGGGTCAGCGCACCGCGCA TTTTCTTCAGCGCCG  78 397
CXD92_RS19345 3978965 .. 3978994 +   -15  -4.25104   CGGGGCGTTGCATGC       TGCCCACCCGGC CCCTGT GCCGCGTGGGCA        TTTTGCTGCGCCCGC  95 55
CXD92_RS19350 NONE
CXD92_RS19355 3985570 .. 3985582 +  -9.1  -3.18264   GCCTGTCCCCGCGGG                GACGG ATA CCGTC                TTAGTACGTACGGCA  59 101
CXD92_RS19360 3986404 .. 3986418 +  -7.8  -3.28712   TGGGTCGCCACCGTG               GCGGTG GGC TACCGC               TTCTGAGGCGCCCGC  56 5
CXD92_RS19365 NONE
CXD92_RS19370 NONE
        mlaE NONE
        mlaD NONE
CXD92_RS19385 3990692 .. 3990710 +  -5.2  -4.72386   GGCCACCGCCCGATT             CGCAAGGA GAT TTCATGCG             TTTTTCCATCGTTTC  81 45
CXD92_RS19390 3991489 .. 3991500 +  -5.8  -4.07568   AGCCGCGCCGGCGCG                GCTG GAAG CAGC                 TTTTCGGCCAGCCGG  64 185
CXD92_RS19400 NONE
CXD92_RS19405 NONE
        murA NONE
CXD92_RS19415 3995252 .. 3995273 + -18.7  -2.61274   CATCGCCTGAACCCC           GCCGCCCGC GCCG GCGGGCGGC            CTTCCTTGCAGTACC  87 31
        hisD NONE
CXD92_RS19425 NONE
        hisB 3998262 .. 3998276 +  -4.9  -2.62184   TGGGCGATGCCGTGC               CGTCC ACCAA GGGCG               TGCTGTAACGCCCCG  42 3
        hisH 3999007 .. 3999019 + -10.5  -2.60615   AAACGCCTGTCGCGA                CGGCC TTG GGCCG                ATATTTCCAACGACT  57 39
CXD92_RS19440 NONE
        hisF NONE
        hisI NONE
CXD92_RS19455 NONE
CXD92_RS19460 4001713 .. 4001728 +  -2.4  -2.90496   TCCCTGGAAAGGCCG              CGTGGC TCCC GCCGCA               TAATTTCGGAGAACC  40 7
        tatA 4001985 .. 4002010 + -12.6    -3.889   CCTAGTCCCGGCCCG         GGACCGGC-CC ATGAC GGCGCCGGTCC         TTTCCTATCGTTCCA  81 36
        tatB NONE
        tatC 4003327 .. 4003352 +  -5.3  -2.52676   AAGTAGACGGTTTCA         CGCTTGCCGCGG CCG CC-CGGCATGCC         TACATTGCCGGCATG  44 65
CXD92_RS19480 4003868 .. 4003882 +  -4.2  -2.82327   TTCGCATACCAAATC               CTTGCC GGC GCCAAG               ATTTCAGTATGAGAA  43 43
CXD92_RS19485 4005091 .. 4005134 + -11.6  -2.52516   CCGTCCGGCCGGCAC CATCCCGCATACGTGTTGGC AACC GCCAACGCGCATGCGTGCAG ATTCGTCGTACAAAA  61 67
CXD92_RS19490 NONE
CXD92_RS19495 NONE
CXD92_RS19500 NONE
CXD92_RS19505 4007674 .. 4007684 +  -3.2  -3.63968   ATATTGCGAATGAAC                 CCTT CCG GAGG                 TTTCGACGTTTCCGC  53 28
CXD92_RS19510 4008433 .. 4008451 +    -3  -3.09785   CGGCAGCGTCGATAT             GTTGAGCC GCC GGCTCGGA             TCTGTTCGCCTGTCC  44 21
CXD92_RS19515 NONE
CXD92_RS19520 NONE
CXD92_RS19525 NONE
CXD92_RS19530 NONE
CXD92_RS19535 NONE
CXD92_RS19540 NONE
       virB9 NONE
CXD92_RS19550 NONE
      virB11 4016816 .. 4016826 +  -2.4  -4.29396   ACGCCTGCCGCCTGC                 ACGC ATT GCGA                 TTTTCGTGCATAATT  62 40
CXD92_RS19560 4016945 .. 4016966 + -15.9   -4.7497   GCCAGATTCCAGAAA           GCCCGGTTC ATGC GAACCGGGC            TTTTTGCTGCCTGCC 100 37
CXD92_RS19570 NONE
CXD92_RS19575 NONE
CXD92_RS19580 NONE
CXD92_RS19585 4022336 .. 4022368 +  -5.4  -3.02043   ATGTGCCTGCTTGCT      TTGCGCACCGGCGT CCATC GCGCCGCGCCGCAA      TCTTCCCACCGCCTT  47 209
CXD92_RS19590 NONE
CXD92_RS19595 NONE
CXD92_RS19600 4026127 .. 4026160 +  -5.2  -3.71873   CGCATCGAATTCCCG    AGCCGGCG-CGG-CAC GCTG GTGGCCGTCGACGGCG     TTTCGCTGTCGCTGG  57 75
        argJ NONE
CXD92_RS19620 NONE
CXD92_RS19625 4030831 .. 4030850 +    -2  -2.89475   GGATCCGCGGGCTGC            TCTGACGC AACG GCGCTAGG             TGTGATGTCTCAATA  40 21
CXD92_RS19630 4031921 .. 4031931 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS19635 4032970 .. 4032980 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 60
CXD92_RS19645 4034158 .. 4034179 +  -3.7  -2.70932   CGCCACGCTCAGGTA           GT-CGATCAG CCC CTGCTCGTAC           TGGTTGCGCGCCAGG  40 199
CXD92_RS19685 NONE
CXD92_RS19710 NONE
        glpK 4052039 .. 4052075 +  -2.2  -3.53811   CACGCCGGCGCGCCG   GCCGCGGGGCTG-GCC AGCTGGC GGCGCAGCACCA-GGC   TTTGCGCGCCATGCA  50 138
CXD92_RS19750 4058757 .. 4058773 +  -2.2  -2.70932   CACGACACGCACGGA              GGCC AAGCATGAA GGCC              TGGTTGCGACAACAC  38 14
CXD92_RS19755 4059664 .. 4059677 +  -2.3  -2.76696   AGTGACCCGCAGTAC               GCGCT TTTA AGCCC                CTTGTTCCGCCGAAA  38 16
        cheD 4060787 .. 4060832 +  -6.2  -3.18264   CGGCGTGCTCCAGGT TGCCGCGGTTCAGCTTGGGC AGGATCGC GCCCA-GCTGC-TCGCGGTA TTGCTCGATCAGCGC  51 280
        mutY 4065530 .. 4065540 +  -3.2  -3.28924   CCAGCCTGAAGGTGA                 TCTG CTG CAGG                 TTCTGCCGCCCGCTG  47 95
CXD92_RS19780 4067262 .. 4067272 +  -6.8  -3.54424   TGTATGCATGGTTCA                 TCCG AAC CGGA                 TTTGAGAAACTGGAA  58 144
CXD92_RS19785 NONE
CXD92_RS19790 NONE
CXD92_RS19795 NONE
CXD92_RS19800 NONE
CXD92_RS19805 NONE
CXD92_RS19810 NONE
CXD92_RS19815 4074390 .. 4074409 + -16.4  -6.06723   GGCCGAGCGTGCACG            CCGCCCCG CAAC CGGGGCGG             TTTTTTTTTCGCGCG 100 57
CXD92_RS19825 NONE
CXD92_RS19830 4077110 .. 4077135 +  -5.9  -3.61652   GACGGAAAGGCGATG         CCGGCGTCCGG CTGG CCCGCCGCCGA          TTGATTGTTTACGCA  56 53
CXD92_RS19835 4078586 .. 4078606 +  -2.4  -2.78712   AGACCAAGCCCTATC            CCAGCGAG CCATT CACGCTGA            TCGTTCCGTTCGGCG  38 209
CXD92_RS19850 4081569 .. 4081588 +  -2.8  -4.07568   GCACCGTCACGCGCT            CCAGCGTGT CGA ACAC-CAGG            TTTTCCACAGCCAGG  58 124
        mnmE 4094003 .. 4094021 +  -6.7  -2.62184   CCGCGCCGGCGATGC            GGCC-CAC GATC GTGCGGCC             TGCTATCGCGCAGCC  47 398
CXD92_RS19915 4096111 .. 4096124 +  -2.3  -3.29947   AAACCCGCCATCGCA               CGCTG AAGA CGGTG                TTGCTGTGGTGGCTG  44 49
CXD92_RS19920 4097586 .. 4097600 +  -5.7  -3.06183   TCATCCGTTGGCCTG               CGATC TGCGC GATCG               TTCCATGGCCATCCA  47 74
CXD92_RS19925 4098669 .. 4098701 + -18.4  -3.02144   AAGAAGTAAACCGAT     CGCGCGGCCGGCGGC ATGC GCCGCCG-CCGCGCA      TCTTCCCAACGGTGC  90 32
CXD92_RS19930 NONE
CXD92_RS19935 4100745 .. 4100766 + -15.9  -5.06414   CGGCCGATTGAAAAA           TGCCGCGGT TCGC ACCGCGGCA            TTTTTCTTGGGCGCA 100 46
CXD92_RS19945 4102575 .. 4102586 +  -7.2  -4.58395   TCGCCCGCTCTGAAT                CGGG AAAT CCCG                 TTTTTCCCGCATACC   0 28
CXD92_RS19940 4100745 .. 4100766 - -15.9  -4.65895   CGGCCGATTGAAAAA           TGCCGCGGT TCGC ACCGCGGCA            TTTTTCTTGGGCGCA 100 59
CXD92_RS19910 4093283 .. 4093297 -  -5.7  -4.15788   AACGTCTTCAACAAA               GTCGA TCTGC TCGAC               GCGGCGTTCCAGGGC  69 303
CXD92_RS19900 NONE
CXD92_RS19895 NONE
CXD92_RS19890 NONE
CXD92_RS19885 NONE
CXD92_RS19880 4086610 .. 4086622 - -10.5  -2.78384   GTTTCTTTTAGCACA                GCGCG CGG CGCGC                TCAGGCCTGCTGCGC  57 26
CXD92_RS19875 4085241 .. 4085261 -    -9  -3.12999   GCATGGGACATGGAA            CCGCTCCT TGTTC AGGAGCGA            TCCATTATGAAAACG  59 130
CXD92_RS19870 4084320 .. 4084330 -  -8.2  -2.57344   GACGCGCGTCAGAAC                 GGCG CGT CGCC                 TTCGATCGTGGTGCG  52 8
CXD92_RS19865 4083212 .. 4083225 -  -2.4  -2.86676   CCGAGGAATCGAAAC               GATG CGCGCC CATC                TCAGCTTCCCTGCGC  40 26
CXD92_RS19860 NONE
CXD92_RS19855 4081493 .. 4081522 - -22.9  -3.48593   GACGCCGCGACACAA       GGCGGCCGCGCCCG CAA CGGGC-CGGCCGCC       GGCGGCATTCAGCGC 100 34
CXD92_RS19845 4078707 .. 4078739 - -10.6  -4.17762   GATCGTGGAAAACAA     GGCTG-GCGCCAATG GCAT CATCGGCGCGCAGCA      TGCGAAGAAGGCGAC  89 235
CXD92_RS19820 4074006 .. 4074018 -  -9.1  -3.01791   ACGGCGTCCTGAACA                TCGCC CGC GGCGA                CCGGGTCCGGATGAA  55 446
CXD92_RS19775 4065087 .. 4065117 -  -5.2  -2.52896   CCATCCCCGAACGCA       GCACGGCCATGCTG GTG CTGCACGGCCCCGA       CGGCATCCTGCTGCA  42 379
CXD92_RS19745 4056658 .. 4056675 -  -2.5     -2.97   AAATCAATCTACAGA             GTCGGAC GTTC GGCCGGC              GCGGACGCGCCGGCC  41 112
CXD92_RS19740 NONE
CXD92_RS19735 NONE
CXD92_RS19730 4053513 .. 4053547 -  -2.7  -3.53811   GCGATCCGCCGGAAA    GCCCGGCGCCAGCG CCGTTTCC CGCCGCC-CCGGCC     CGCCGCCTCAGTGCA  49 33
CXD92_RS19725 NONE
CXD92_RS19720 4051599 .. 4051612 -  -8.1  -3.14132   GCTGTCGTGCATGAA               TGCCG ACAG CGGCA                TCCCGCTGTCCGAGC  53 358
CXD92_RS19705 4048626 .. 4048653 -  -4.8  -2.71712   GTCGTCGCCGGAAAT        CGAGGCG-TTATG TGC CATATGCGCCGCG        CACGGGCCCGTGGGT  43 42
CXD92_RS19700 NONE
CXD92_RS19695 4046834 .. 4046849 -  -7.6  -2.57132   GCCTGCGCCGAGAAG              CTGTCA AATT TGACAG               GATCTGCCGCGGCCG  50 45
CXD92_RS19690 4046151 .. 4046201 -   -11  -2.50935   ACGCCACCCAGGAAC GCCCGCCCCGCGTGCTGCTGCT CGACGGC AGCGGCAACATGCGCGCCGAGC TGGTCATGACCGCCA  58 248
CXD92_RS19680 NONE
CXD92_RS19675 NONE
        zapD 4042945 .. 4042959 -  -5.6  -3.55071   CCAGACCGGCCCAAA               CTGGCA GTT TGCCGG               GCGCTGCTGAAATAG  54 137
        mdtA 4041626 .. 4041655 -  -7.2  -3.21099   CGGCCGCAGGATGAA       CAGGCGCGACG GGCTCACGG CGTC-CGCCTG       GGCGCCCCGGTATTG  52 10
        mdtB 4038562 .. 4038584 -  -4.8  -2.53164   GGACGGACGATGAAC           GGCGCC GACAGAATCAT GGCGCC           TGCCGCGCGGCCGCG  42 16
CXD92_RS19655 NONE
CXD92_RS19650 4033781 .. 4033815 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS19610 4026324 .. 4026353 -  -9.9  -3.16191   CGACACCTTGAGCAA       CGCCGAGCAGCGCA AGG TGCGCGGC-CGCCG       CATCGGCATGATCTT  62 140
CXD92_RS19565 4016945 .. 4016966 - -15.9  -3.91144   GCCAGATTCCAGAAA           GCCCGGTTC ATGC GAACCGGGC            TTTTTGCTGCCTGCC  91 66
CXD92_RS19340 NONE
        fghA 3976012 .. 3976043 -  -4.3  -4.08706   CGCCCAGTATATAAA      GCGGCCCGGGC CCGGCCTGTT ACCCCAGCCGC       TCGACGTGAAACCGG  62 13
CXD92_RS19330 3975234 .. 3975253 -    -2  -3.53012   CTGCGCCGCGCCAAA            GTTCCGGA ATTT CCCAGTAC             GCAGGATATTTTTCT  48 54
        rpoH 3974202 .. 3974221 - -13.6  -5.40474   AGGCCCCCAAAAAAA            CAGACCGC CGTA GCGGTCTG             TCTTGCATGCGCGGG 100 55
CXD92_RS19315 3969907 .. 3969922 -  -8.2  -3.66666   GCGAAAACCTGGAAA              CCGCGC TGGT GCGCGA               ATGCGGCGAAGAAGC  63 427
        coxB 3967946 .. 3967978 - -13.4  -3.22858   CCAACTACAGGAACA     GCAGCGG-GGCGCGC TTCA GCGCGCCTCCACCAC      GTCCTTGGGTTGGAC  73 8
        ctaD NONE
CXD92_RS19295 NONE
CXD92_RS19290 NONE
CXD92_RS19285 3964887 .. 3964904 - -12.7  -3.33696   CTGCCGGCGAACGAA             TGCCCCC TTGC GGGGGCA              TTCGTCGTCAAGGCT  71 57
CXD92_RS19275 NONE
CXD92_RS19270 NONE
CXD92_RS19265 NONE
CXD92_RS19260 NONE
CXD92_RS19255 3960475 .. 3960501 -  -8.7  -2.87132   TTGGGCGTCCACAGA         TATCGGCCCCC CATGC GGGGACAGATA         CCGTCTTGGCAGTCA  54 137
CXD92_RS19245 3959347 .. 3959362 -  -2.4  -4.07885   CAGCCCCTGCCAAAA              CGCCGG ATGA CCTACG               CCGCTGGCCGCAAGT  58 111
CXD92_RS19240 3958490 .. 3958519 -  -2.6  -3.31322   GCGAAGGTTCGATAA       GCGCGACGATTC CAGGGC GTGCCGGCGCGC        TACGGCTTGTCCGCC  44 25
        glmU NONE
CXD92_RS19230 3955596 .. 3955627 - -10.8  -3.04322   TGCAACCTCGCAATA      CGCGGCGTCAGCGGA CCA TCCGCCG-CACTGCG      GGCATTATAGAAGTA  62 87
CXD92_RS19225 NONE
CXD92_RS19220 3952997 .. 3953031 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS19200 3949412 .. 3949422 -  -8.2  -5.15634   CACTCTAGGAAAAAA                 GCGC GGC GCGC                 GAAAATAATTAAAAC  95 203
CXD92_RS19195 3947971 .. 3948002 -  -8.6  -2.56596   TGGGTGACGAAGGGA      TGCGAGGGCCG-CCG TGG CGGCCGGCCCTCATT      CGGAGGTGGCGGTGC  52 21
CXD92_RS19190 NONE
CXD92_RS19185 NONE
CXD92_RS19180 NONE
CXD92_RS19175 NONE
CXD92_RS19170 NONE
CXD92_RS19165 3941136 .. 3941150 - -11.4  -3.90112   TGGCGGCCAAGGAAA               CGCTGG CCA CCAGCG               ACCTCAACACCGAGC  77 391
CXD92_RS19155 NONE
CXD92_RS19150 NONE
CXD92_RS19145 3937349 .. 3937360 -  -2.2  -3.18389   GGAAGATGAAAATCA                CGAA ACAC CTCG                 TTCATGCAGGCCCGG  42 95
CXD92_RS19140 3936466 .. 3936511 - -14.5  -3.70902   CGCGCGAGACCGAAA GCCCGGGTTTCCGGCAGCGCG TCGC CACGCAGCTGGCCACCCAGGC CACCCAGGCCATCCA  88 96
CXD92_RS19130 NONE
CXD92_RS19125 NONE
CXD92_RS19120 NONE
CXD92_RS19115 3931196 .. 3931209 -  -5.2  -3.10611   TTTACCCGAAGAAAC               GGGC CAGCAC GCCC                TGCCGCGGATGTCGG  49 382
CXD92_RS19110 NONE
CXD92_RS19105 NONE
CXD92_RS19100 NONE
CXD92_RS19095 3927435 .. 3927445 -  -8.2  -2.70932   CTCTGTCTGCAATGA                 GGGG GCG CCCC                 GGGTTCAGCGCCCGT  52 30
CXD92_RS19090 3926194 .. 3926209 -    -6  -2.55606   CTATATAGGATGAAT              GGGGTG CCTG CCCCCC               TGGGGACAGATACCG  46 163
CXD92_RS19085 3925028 .. 3925044 - -10.8  -3.19602   CGGGCTACACCAAGA              CGCCGC CCTAC GCGGCG              GGCATCGCCCTGCAG  64 155
CXD92_RS19075 3922757 .. 3922769 -  -3.3  -3.60475   AAGTGTGATCCGAAA                GCGGA CCG CCCAC                TTTGGTTGGGTCGGT  49 498
        trmB NONE
         pip NONE
        thiS NONE
        lysM NONE
CXD92_RS19020 3915320 .. 3915333 -  -5.9  -2.87931   GCCAGGTGCGACAGA               CCGGC GCGG GCCAG                GACGCGGCTGACGGT  48 330
CXD92_RS19000 3911437 .. 3911456 - -16.4  -5.04733   CAAGCATAAACAAAA            CGGCCGGC TTGC GCCGGCCG             TCCCGGGACGGTGAC 100 46
CXD92_RS18995 3910374 .. 3910388 -  -2.8  -3.01924   GATTCGCCCGCAAGA               TCCC ACCAATG GGGA               GTTGGGAACGCGTCT  42 101
CXD92_RS18990 3909955 .. 3909987 - -18.5  -5.81412   CGGAGGCAAAAAAAA     CGGCGCCCGTCCCT CTGTAC AGGG-CGGGCGCCG      GCACTTACGGCTGCG 100 63
CXD92_RS18985 3908235 .. 3908263 -  -7.4  -3.53012   GCGCGCTGCTCGAAA       GCGAATCGGC-CC GGCT GGCGGCGATCCGC        GGCACGGACGCCGAC  60 434
CXD92_RS18975 3905457 .. 3905480 -   -21  -2.71364   GCAGCCCGGCAAGCA          GGCGCCCGCC GGCA GGCGGGCGCC           TGGCGGCGTCAGCGC 100 34
CXD92_RS18970 3904779 .. 3904795 - -15.1  -5.53288   TTTAATCGAAAAAAA              CCGGCGC CCG GCGCCGG              ACCATGACTGCGTTC 100 39
CXD92_RS18965 3904496 .. 3904533 - -16.9  -2.65174   AAAATAAGTAATCTA   CCCGGGAGCCTGTCCCC GCAT GGGGACTGGCTCCCGCC    AACTTCAGCCGTCAG  80 104
CXD92_RS18915 3893108 .. 3893134 -  -9.2  -2.52516   CGCGGCACGACGAAG         CCGCCGCCACGC TAG GCCAGGCGCCGG         GGGCGCAGCTGTATC  51 513
        uvrA 3883053 .. 3883087 -  -2.8  -3.01712   GGCCTGGCGGCAAGA    TAGGGGGG--CGGGCG GTTCG CGTCCGTGCCGCCCTA    GTCTAGCGCCGTTTG  42 28
CXD92_RS18865 3882194 .. 3882217 -  -8.9  -3.53012   GGCGGCTGTTCGAAA          TGGGCTGAGG GGCTG CCTC-GCCCA          TGCGGCCTACCCCAA  62 183
CXD92_RS18845 3876450 .. 3876475 -  -2.4  -3.70149   TCGACAGTATCGAAA         GCCAGGCGGAC GATTG GGCCGCA-GGC         CTGGATGTCGATATC  53 331
CXD92_RS18835 NONE
        lysA 3874840 .. 3874869 - -22.3  -3.53012   GCGCCGCCCTTCAAA       GACAATGCCCCGC AGAT GCGGGGCATTGTC        TTTGGCAGGCCTTGC 100 48
CXD92_RS18810 NONE
        hemB NONE
CXD92_RS18785 3864207 .. 3864237 - -15.3  -3.13164   CCCGTAAGCAGTCAA       GCGCGGTGGGCGC GCCAT GCGCCCGCCGCGA       TGTTTTCATGCATCG  78 453
CXD92_RS18685 3853375 .. 3853395 - -15.4  -4.72272   GCCGGCCATGAAAAA            CCCCGCCG GATCG CGGCGGGG            TTGGCCTGAGCCCGG 100 50
CXD92_RS18680 3852348 .. 3852370 - -17.8  -3.72576   CGCTCCGGCATGAAA           CGGCAAGAGC CTG GCTCTTGCCG           TTTTTTTGTTCATCG  93 125
CXD92_RS18595 3840685 .. 3840706 - -15.1  -3.14132   TCTGTTCTTCACCAA           GGCCACGCC TTCG GGCGCGGCC            TAGCTGTGAACTGTC  76 25
CXD92_RS18570 3835102 .. 3835133 -  -2.2  -4.68103   CCAACTGGAACAAAA     GGC-CCGCCACGAC TTCGAG GACGC-GCGGCGCC      AGGCCGTGCAATCGG  76 357
CXD92_RS18530 3824526 .. 3824560 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS18505 3820823 .. 3820872 -  -7.9  -3.91084   GCAGCCTGAAGGAAA CCCGGCTGCCGC-TCACGCC-GCC GCCCG AGCAGGCATGACGCCGC-GCCAGG CCGTTCAGGTCAGCA  68 30
        ilvB 3818332 .. 3818371 -  -4.9  -3.76224   TGGCCAGCGACGAAA CCGCC-TTCATCACC-GGC GCCT GCCTGGAGGTGGATGGCGG  CCGCTGCGTGTAGGC  58 94
CXD92_RS18455 3806741 .. 3806794 -  -9.4  -3.25823   CTGGGGCCACAGCAA CAGGACGT-GGCGGCCGCGGTCGGCG ATTT CGCCCTGCGCCGC-GCCGACGGCCTG TGGGCCTACCAATTG  61 390
CXD92_RS18425 3798240 .. 3798267 -  -8.4  -3.25823   CCTGCCGCACATCAA        GACCGGCAA-GGC CGT GCCGCTGGCGGTC        ACCACCGCCGGCCGG  59 351
CXD92_RS18415 3796191 .. 3796212 -  -4.3  -3.05596   GACGCCGGGACGGAA           GTCCTGCAT CGCC ATGCCGGCC            CCGTCCTTACTTGCG  45 32
CXD92_RS18410 3795933 .. 3795957 - -17.1  -3.20991   TCGAAGTGAAGTGAA          TGACGCCGGGC GCG GCCCGGCGTCG          GGTCAGCCTTGCTCC  84 28
CXD92_RS18380 3787079 .. 3787123 -    -2  -3.17723   GTATTTCGAAGGCAA GCTCAAGCGCCGCACCGATGCC GAC GGCATCG-TGCGTTTCCAG-GC GGCGTAGCGGGCGCG  42 56
CXD92_RS18370 3785532 .. 3785557 - -13.5  -3.38522   GATGCAGTGCAAATA         TTACGTTTACG TAAA CGTAAACGTAA          AGTTGAGTCGGGTTT  75 91
CXD92_RS18325 3776607 .. 3776628 - -11.5  -3.57144   CGTCGTATGCCGAAA           GGGGCTGCC GTGA GGCAGCCTC            TTTTGCTTGGGGGCG  72 95
        rpmH 3770975 .. 3770991 -  -2.1  -2.78384   TCCGCCTGGATTAGA              CGGCCAG ACG CTTGCGG              CCCTTGGCGCGGCGG  38 4
CXD92_RS18300 3770474 .. 3770518 -  -2.8  -4.12902   GAAGTACCGGTAAAA CCGGATCGGGGCGATAAGCAG TCTC CTGATCATCGCGCT-ATCCGT GTGAAGTGAGCATCT  59 10
        yidD NONE
        yidC 3768457 .. 3768476 - -16.4  -5.55664   CCAGGACGAAAAAAA            CGGCGCCC CGCA GGGCGCCG             TTTCGTGGCTGGCTC 100 43
CXD92_RS18275 3765895 .. 3765940 - -14.8  -2.78384   CGGCGCCGCAGGACA CGGCCG-AGGTCGCCGGCCGCAA GGC CTGAGGCCGGC--CCTACGGCCG GGCCGTGTCGCTCTG  72 17
CXD92_RS18265 3763244 .. 3763270 -  -7.1  -2.82516   CCCTGTACGACCAGA         GCGCGCCGGCC GACGA GGCCGAGGCGT         TCCGGCGCAGCGGCT  50 68
CXD92_RS18255 3760437 .. 3760469 -  -3.3  -3.28791   ATGTGCGGCCCACAA     GTACGGCGGGATTG AGGCCG CCA-CCCGCCGCGC      CATCGTCCGTGCCGC  47 393
CXD92_RS18165 3750817 .. 3750832 -  -8.2  -3.09273   GCGCGCCAATAGATA              GGCCAC CACA GCGGCC               CCCACCAGGATCAGG  56 199
CXD92_RS18160 3749831 .. 3749855 -   -15   -4.2828   GTCCACCCATGAAAA         CCCCGCCAGGC CTGC GCC-GGCGGGG          TTTTTCACAAGGGTG  95 52
CXD92_RS18135 3746227 .. 3746242 -    -6  -3.15579   CCAACGCCCCAGCAA              GCGGCG TGCC CGACGC               TCGCGGAAGATCCGC  51 71
CXD92_RS18130 NONE
CXD92_RS18125 3745773 .. 3745789 -  -3.5  -5.00616   TTGCGTTTGAAAAAA              TCGCCTG CGC CCGGCGC              GATGCCGGACAGCGT  81 127
CXD92_RS18120 3738502 .. 3738538 - -11.3  -3.09785   GCATACGCCAATATA    GCCGCAATGCCGGCCGC CGA GCGGCCGGCCCGGCCCC    CGGTCAATACGCCAC  64 29
CXD92_RS18110 NONE
CXD92_RS18105 NONE
CXD92_RS18100 NONE
CXD92_RS18095 NONE
CXD92_RS18090 NONE
CXD92_RS18085 3731691 .. 3731707 -  -5.1  -3.78034   CATCGACATCAAGAA              GCTGG GACGTAT CCAGC              GCCCTGGCCACCGGG  58 494
CXD92_RS18065 NONE
CXD92_RS18060 3727750 .. 3727768 - -10.3  -3.07222   AGGAGCACCTGAAGA             TCCTCGC GGCCT GCGAGGA             AGGCAATGCCGCGCG  59 110
CXD92_RS18040 NONE
        rimO 3722361 .. 3722380 - -11.4  -3.28712   TTGGCTGCGCTACAA            GCGCCACG CCTT CATGGCGC             GCGGCTTGAGCGCCG  66 434
CXD92_RS18025 NONE
CXD92_RS18020 NONE
CXD92_RS18015 NONE
CXD92_RS18010 3719419 .. 3719439 - -11.8  -3.36492   GCTGGAATTGCAGAA            GGCCGGCG GCAAG CGCCAGCC            GGTGGACGTCTTCGT  66 82
CXD92_RS17980 NONE
        dprA NONE
CXD92_RS17970 3712565 .. 3712593 -  -4.3  -3.20723   TGTTCATGAATGGAA        CGGGCGATGCGGC GAG GCCGCGTAGCATG        AGGAGGGCGTATGGG  47 131
CXD92_RS17965 3711832 .. 3711868 -  -2.2  -4.28254   GCTCAAGAGCGAAAA   CCCCAACGT-GCGCCGCA TCC TG-GGCGTGACGCCGGGC   GCCGGCGCCAACCTG  65 237
CXD92_RS17945 3707285 .. 3707310 - -10.3  -3.35679   CGTCGTCACCGAGAA         CGGCGTGGCGC AGAT GCGCCAGGTCG          ACGGCGTGGCCGTGC  63 290
CXD92_RS17930 3705077 .. 3705111 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS17900 3701275 .. 3701289 -  -8.5  -3.14132   CCTGCGCTGGATCAA               CCGCC TGTGC GGCGG               CATGCTGGTCGTGCT  56 123
        rsmB NONE
CXD92_RS17885 NONE
CXD92_RS17880 NONE
CXD92_RS17875 NONE
        trkA NONE
CXD92_RS17865 3692713 .. 3692739 - -11.4  -2.70232   CTGAATAGTACACCA         CCGCGCGGGCAG CGG CCGCGCGCGCCG         CTATTTGCGCCAGAA  62 26
CXD92_RS17860 3691712 .. 3691754 -  -3.2  -3.14344   GACCCGCGCGAGGAA TTCCATGCAGCCTGGCATGC GCC GCACGCCACGCTGGTCGCCA CCATGCCGGACGACA  45 398
CXD92_RS17850 3690214 .. 3690249 -  -2.3  -3.54424   CGGGACGCGCCGAAA    CCCTTGCCATGCGGG ACTTTA CGCGCCCGGCCAGCG     ACCCGCGGCAGTCCG  48 167
CXD92_RS17845 NONE
CXD92_RS17840 3688044 .. 3688090 -  -8.6  -3.53224   CAGCGCGCGCGCAAA CGCCAGCAGGTCCTCGGCCTG CACATC CAGGCCATAGTCCAGCTG-CG GCCCCGACTGCGACA  62 262
CXD92_RS17830 NONE
CXD92_RS17825 3685532 .. 3685543 -  -7.2  -3.68351   GCGTCACCAGCGAAA                CGCC AGAC GGCG                 AGATCGCCGCATCCA  64 278
CXD92_RS17800 NONE
CXD92_RS17795 NONE
CXD92_RS17790 NONE
CXD92_RS17785 NONE
CXD92_RS17780 NONE
CXD92_RS17775 NONE
CXD92_RS17770 NONE
CXD92_RS17765 NONE
CXD92_RS17760 3671323 .. 3671342 - -13.6  -4.52589   TTCCCTTAGATAAAA            CGGGCGTT ACCA AACGCCCG             GCAGGTAACCACTAT 100 37
CXD92_RS17755 3669650 .. 3669664 - -11.4  -3.09635   AGCCTGAGCATCGAA               GTGGCC TAC GGCCAC               GCCTGGCGGGCGCCG  62 125
CXD92_RS17745 NONE
CXD92_RS17740 3667039 .. 3667060 - -10.1  -3.05384   GCTTTCCGCAGGTAA           TCACCGCCA TCAT CGGCGGCGA            CGTGCACGCCGGTTT  59 423
CXD92_RS17710 NONE
CXD92_RS17705 NONE
CXD92_RS17700 NONE
CXD92_RS17695 3659082 .. 3659116 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS17685 3657146 .. 3657182 - -23.8  -2.71693   GAGGAAGGAAAGTCA    GCGGGTGCCTGTCCCC CGTGC GGGGACAGGCACCCGG    GTGGGGGGTTTACAT 100 35
CXD92_RS17670 NONE
CXD92_RS17665 3652454 .. 3652485 -   -15  -2.60075   GCGGGTCGAATGAAG      GCAGCCGCGCCGCC CGAG GGCGGCGCGTTCGC       ATGAGGACGAGGCCC  71 45
CXD92_RS17580 NONE
CXD92_RS17575 NONE
CXD92_RS17570 NONE
CXD92_RS17565 NONE
CXD92_RS17560 NONE
CXD92_RS17555 NONE
CXD92_RS17550 NONE
CXD92_RS17545 NONE
CXD92_RS17540 3625069 .. 3625097 -  -3.7  -3.31726   GGTCGCCACAGAATA       CCTGCGCGCTGG TCCAGG CCGGCGC-CGGG        GTGGCGCTGGTGGAC  47 199
CXD92_RS17530 3623185 .. 3623195 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS17525 3622007 .. 3622019 -  -6.9  -3.29144   CGACCTGCTGCACAA                GGGCA TCG CGCCC                AAGGCCCTGGTGTTC  52 187
CXD92_RS17500 3618432 .. 3618445 -  -4.5  -3.53733   CGGAGGTGATAAACA               CCAGT GATC ACCGG                GCGCTGTTCAGGCCT  52 33
CXD92_RS17495 3616215 .. 3616230 -  -6.8  -3.03124   GCTGACGGCGGAATA              CCTGCG CACG CGCAAG               CAGTTCGGCGTACCG  48 408
CXD92_RS17455 3607749 .. 3607807 -  -7.5  -2.70932   CCTGGCCGGCAAGCA CCAGC-C-C-ATGC-GCCTGGGCATGGCG TGGAT CCCCGTGCCCAGGCCGCGTCGCGTGCTGG AGGCCTTCATGCAGC  49 189
CXD92_RS17435 3602556 .. 3602566 -  -2.4  -3.17075   TGGTGGGCAACGCAA                 TCGG GCG CCGT                 GCATGGCCGTCCCGC  42 42
CXD92_RS17430 3601508 .. 3601521 -  -3.7  -2.56596   GTGTCGATCAATCGA               CGCTG ATGT CGGCG                ACGTTGGCGATGGTT  40 4
CXD92_RS17425 3600274 .. 3600286 -  -4.7  -4.20696   GGAGTAAGGGGAAAA                GCCGG CGG CCGGT                CAGGGAGGCTGTCCC  66 202
CXD92_RS17415 3597539 .. 3597553 -  -2.1  -3.17075   TCTGTGGGAACTCAA              CGAGGC CTTT GCCT-G               CCAGGTGCTTTATTG  43 267
CXD92_RS17400 NONE
CXD92_RS17395 NONE
CXD92_RS17390 NONE
CXD92_RS17385 NONE
CXD92_RS17380 NONE
CXD92_RS17375 3585006 .. 3585016 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS17365 3583984 .. 3584023 -  -9.4   -3.5361   GAACCATGCATACAA  CCTATTGAATCTTCACAG CTAG CTGTGAACTGTCAATAGG   TTGTATTCGTCCAGG  64 4
CXD92_RS17360 3582846 .. 3582877 - -12.2  -3.03338   AGAAGTCCGCGAACA      GCAGGAGGAGCAGG CGCG CCTGGCCCGCCTGC       GCACCTTCGAACTGA  67 101
CXD92_RS17350 3580902 .. 3580928 - -11.5  -3.58231   AAAGAATGGACACAA         GCGGACGCCCG GCGCA CGAACGCCCGC         CGCGAAGGCGGGGTC  72 53
CXD92_RS17345 3579771 .. 3579781 -  -2.4  -3.14344   CAGGTCCTTGAGCAA                 GGTC ATC GCCC                 GCGCATCACAGATCG  42 31
        prmC NONE
        grxD NONE
CXD92_RS17330 3577982 .. 3578008 - -22.4  -3.64703   GCGGCCGTACGCAAA         GAAGCCTGCCCC ATC GGGGCAGGCTTC         AGGTACAGGCAGGCG 100 53
CXD92_RS17325 NONE
CXD92_RS17320 NONE
CXD92_RS17315 NONE
CXD92_RS17310 3572019 .. 3572034 -  -3.2  -3.17685   CAAGGACACATGGAA              GGTGTT AGTG AACTCC               ATCGACAAACTCCCC  44 14
CXD92_RS17305 3571464 .. 3571512 -  -7.9  -3.14132   CTGCGCCTGCAGCAA CACAGCCTGCGCATCCGGGCTG ACCACG CTGCCCGCGGGCGC-GGCCGCG GCTACAGGCGCCGCG  54 130
CXD92_RS17300 3571200 .. 3571224 -  -7.8  -2.91582   CACTGCACGGACAGA         CGCCAGTTCCC ATGC GGGA-CAGGCG          CCTCGCGTATCGGAA  52 61
CXD92_RS17275 3566017 .. 3566060 -  -9.5  -3.44222   CAAAGCAGCAAGTAA CGCCACGG-TGCCTGTCCCC CTTGC GGGGACTGGCACCCACACCG AACCCCGCCCTACCG  63 35
CXD92_RS17230 3558569 .. 3558599 -  -8.2  -3.53012   GCTCGGCGCGGGAAA      GGCGCCTGCCAGC GCCATG GC-GGCCAGCGCC       GGGATCAGGGATAAG  62 194
CXD92_RS17220 3555503 .. 3555519 - -10.8  -2.73875   GGTTCTGGAACACCA              CGCGCG CCACC CGCGCG              CCGGTCAGGACCTTC  60 372
CXD92_RS17210 3553113 .. 3553130 -  -8.3  -3.90112   GGTTTTTCAAGGAAA             GGCCGCC TGGC GGCGGCG              CGGCCCTGCCCTGTC  70 41
CXD92_RS17205 NONE
CXD92_RS17200 NONE
        aspS 3550087 .. 3550119 -  -9.8  -3.64703   GGCGCGTTATCGAAA     CGGGCGAAGCCACGC CATT GCCCGGCCT-GCCCG      ATTCCGGCCGCTGGC  70 81
CXD92_RS17190 NONE
        clsB 3547902 .. 3547914 -  -6.2  -3.14132   TGGTTCCTGGACGAA                GCGG TGACG CCGC                GCATCCTGGCCGGCG  50 111
CXD92_RS17160 3542907 .. 3542950 -  -8.1  -3.18199   TAAGGCGCAAGGCAA GGCGCGGACAGCGTCCGCCGGC GAG GCCGGCGGACGCCG-C-G-GTT TACTGCAGCGGTTCG  54 25
CXD92_RS17155 3541518 .. 3541542 - -10.7  -2.71011   ACGCCGGCTGAAGCA         CGGCGG-CGC GGGCTG GCGGCCGCCG          CGCTTCAGGCGGCGT  60 30
CXD92_RS17145 3539460 .. 3539490 - -10.3  -3.43446   CGATACCGAACAATA       GACCAGGCGCGGG TTGCG CGCGCGCATGGCC       TGCTGCCCCAGCCCC  65 374
CXD92_RS17135 3537733 .. 3537751 -  -8.1  -3.47227   CGGCAAGGACGACAA            GGCGCGCG GCAT CG-GCGCC             GGCCTGTCCGACGCG  58 209
CXD92_RS17075 NONE
CXD92_RS17070 3525017 .. 3525044 -  -7.6  -3.22884   GCACGAAGGCATCAA        GTCGCTGCGCGAG AAG CGCGCGCCG-GAC        TTCCGGTAAGGGGGC  56 114
CXD92_RS17060 NONE
CXD92_RS17055 3522762 .. 3522793 - -13.1  -4.20516   GGGGGACGGAAGAAA      CGTCGCGTCT-GCC AGACA GGCCAGACGCAACG      CGGCGGCGCCGCGAG  91 149
CXD92_RS17045 3519878 .. 3519909 - -17.2  -3.53012   TGGTGGTCTTCGAAA      GACCGGTCCGGCCG TCGC CGGCCCGGCCGGTC       AGATAGGTTGGGCCA  89 24
CXD92_RS17040 NONE
CXD92_RS17035 NONE
CXD92_RS17030 NONE
CXD92_RS17025 NONE
CXD92_RS17020 3514104 .. 3514131 - -21.4  -3.62597   CGGAGGGGGGAACAA        GGTGCCTGTCCC CACG GGGACAGGCACC         CACGCCCTTGGTGCA 100 56
CXD92_RS16940 3496961 .. 3496985 -    -7  -3.01791   ATCGCCGGCCGAACA          GGTGGCGGCG ATGGA CGCGGCCAGC          TACTTCAACCTGTTC  51 234
CXD92_RS16925 NONE
        folB NONE
        ttcA 3490860 .. 3490870 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS16905 3489711 .. 3489730 -  -3.4  -3.30124   GCGCACGCTGGACAA            CGTGCTGC TTAC GCCGCACC             TGGGTTATGTGAACG  47 151
CXD92_RS16875 NONE
CXD92_RS16870 3483373 .. 3483398 -  -6.7   -4.7497   GGCATGCAGCAAAAA         GCCCGG-TCCAG TTA CGGGTTCCGGGC         TTGGCGCTGCACTTC  84 212
CXD92_RS16865 NONE
CXD92_RS16860 NONE
        trpD NONE
        trpC 3479285 .. 3479317 - -12.6   -3.8186   CATCGCAAGGAAGAA     GCGGGCGGCGCGCCG GCGC CGGCGCG-CGGCAGC      GGCCGCTGAGGCCGG  81 55
CXD92_RS16835 3475421 .. 3475453 -    -9  -3.04322   GGCAACTGGCCAAGA      TGGCCATGCGCGCC GAGCA GGCGCGCAGCGTCA      TGTTCCAGACCGCCC  57 46
CXD92_RS16825 3473220 .. 3473261 - -10.1  -2.78463   AGCGCGTGGACCACA CCATGACGGCCGCCGACCTG ACC CAGGTGGGCAGC-GACATCG AATCGCTGGTGCTGT  56 113
CXD92_RS16790 3466971 .. 3467006 -   -19  -3.14132   CTCTTCCCGCAGGAA    TCCGGGTGCCTGTCCC AGCG GGGACAGGCACCCCGT     CATACGCCAGCACGC  90 76
CXD92_RS16775 NONE
CXD92_RS16770 3462543 .. 3462561 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACAGGTG 100 202
CXD92_RS16745 3453278 .. 3453297 - -12.8  -5.60993   CCGCGCATAAAAAAA            CCGCCGGC AAGG GCCAGCGG             TTTTTTTACCTGTAA 100 51
CXD92_RS16735 NONE
CXD92_RS16730 3449417 .. 3449473 - -16.4  -2.80398   GAATGAATGCAAGCA TGGCAACTCGATACGGGGTGCGGCGCC GCCA GGCGCCGCACCCGGGA-CGGGACGCCG GCGCGCAACGTCCCT  77 49
CXD92_RS16725 3448014 .. 3448063 -  -6.4  -3.73775   CCGACGCCGACGAAA CCGACG-ACGCCG-CGCCGC ATGTCCAGATGG GCGGCGCCGGCGCGCGCCTG CTGGGCGGGCGCGGC  59 171
CXD92_RS16715 3446621 .. 3446676 -  -2.5  -4.45175   CAGGAAAAAAGGAAA GGGAGATGTCGCGCAGGATC-TGCCGC TTGG GCGGCACGATCTTGC-CGACACGGTTC ATCGTGTAGACGTAT  67 143
CXD92_RS16700 3444156 .. 3444171 - -11.8   -4.7497   GGCAGCCACGAAAAA              CCCGGC CGAA GCCGGG               TTTCTCGTTGAGGCG 100 66
CXD92_RS16695 3442784 .. 3442822 - -20.3  -3.25113   CCGCAAAACTGAATA   CTCGGGTGCCTGTCCCC GCACG GGGGACAGGCACCCGCT   GAATCTTGGTCCCCG 100 68
CXD92_RS16670 3436996 .. 3437023 -  -9.2  -2.61582   GACCCCACCCAGAAC        CCGAAGATCCAGC GCG GCTTGATCT-CGG        TGCGGGCGCGGATAC  54 390
CXD92_RS16645 3431716 .. 3431727 -  -7.2  -3.95456   AAACGGAACAGGAAA                GGGC CGCG GCCC                 CGGGAACTGGCTAGC  66 36
CXD92_RS16640 3430352 .. 3430394 - -14.1  -2.78384   CTGGTGGCCATGATA GGCGC-GGCCAAGGCCGACG GCCA CATCGGCCCCGACGAGCGCC AGTTGCTCGAAACCG  67 302
CXD92_RS16630 3429249 .. 3429267 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACTGGTG 100 214
CXD92_RS16605 3424193 .. 3424206 -  -2.3  -3.02166   GCCGGAATGAAAGTA               CGGCA TTAT CACCG                GCCCGGATCGTCGGC  41 20
CXD92_RS16600 3423491 .. 3423525 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS16565 NONE
CXD92_RS16560 3414353 .. 3414365 -  -9.1  -3.02511   GCGAGGCGTTCAATA                TCGCC AAC GGCGA                CGTGGTGCTGTGGCA  55 368
CXD92_RS16525 NONE
CXD92_RS16520 NONE
CXD92_RS16515 NONE
CXD92_RS16510 3405721 .. 3405774 -  -4.3  -2.94144   CCGGCAGGTAAAGGA CGATGA-CGGCCAGCGGCAGGAGCGC GGC GCGGCGCAGCGGCAGGCGGATCATCA GTGCACCCCCCGCGC  44 23
CXD92_RS16505 NONE
CXD92_RS16500 NONE
CXD92_RS16495 NONE
CXD92_RS16490 NONE
CXD92_RS16485 3400406 .. 3400442 -  -7.9  -3.85698   GGCGCCGCTGACAAA   GGCGCTGCG-GCCGGC CAGCGC GTCGGCGCGCAGCACG    CGCAAGTCATCGATG  66 110
CXD92_RS16475 3398619 .. 3398633 -  -3.4  -3.78934   GCGGTTGGAGAACAA               CCGCGA AAG CCGGGG               ATCGTTGCGGGTATC  56 202
CXD92_RS16465 NONE
CXD92_RS16460 NONE
CXD92_RS16435 NONE
CXD92_RS16430 3388020 .. 3388047 - -11.4  -4.50976   GTCCAGATGAGAAAA        GCCCGCA-AAACC TGA AGTTTATGCGGGC        TTTCCGGGGCGCTAC 100 63
CXD92_RS16425 3387476 .. 3387495 -    -7  -3.08679   CGGCTCGATGCAATA            GCGCCCGC CTTC GCTGACGC             GTTCTTCAGCTACGG  52 35
CXD92_RS16410 3386409 .. 3386419 -  -3.2  -3.41602   TGCATGGTATCACAA                 TACC CAG GGCA                 TTCATTCCATCACCC  48 27
CXD92_RS16405 NONE
CXD92_RS16400 3384962 .. 3384995 -  -4.6  -4.36411   CATGAATGACGAAAA    TCC-CGACCCGG-TGC TCAG ACAACCGGGTTGTGGA     CGGTAATCAGCTTGG  69 6
CXD92_RS16395 NONE
CXD92_RS16390 NONE
        ureC NONE
        ureE 3381593 .. 3381620 -  -6.8   -3.1372   CAGGCCCTACGAATA        GCTGAAGCCGCC GATC GGCAGCGCCGGC         GAAGACAGATGCAAC  52 62
CXD92_RS16375 NONE
        ureG 3380189 .. 3380229 -  -8.7  -3.58726   GTCCTCTATATATAA  CGGCAGGCGCGCCGGCCCG CAC CGAGCAAGCGCGTGCGCGG  GAATCTTCGGCAAGC  62 99
CXD92_RS16325 3367187 .. 3367204 -  -9.1  -3.16564   CGCCTATTCGACCAA             CCGCGTC ATCG GACGCGA              CAACGCCCTGCCCTG  56 422
CXD92_RS16305 3364393 .. 3364416 - -16.8  -6.06723   GCGGCGAAAAAAAAA          GCCCGAGATC TTGC GATCTCGGGC           TAAATCCACCAAAGG 100 465
CXD92_RS16300 3362937 .. 3362947 -  -6.8   -3.1506   AAATCTCCCTATCAA                 CCGT GTG ACGG                 CTACGGAATTGTATG  52 102
        tviB NONE
        tviC 3360611 .. 3360623 -  -4.8  -3.51232   TGGCTTTCAAATCAA                CGCA GGAAT TGCG                TGTACCAGGGCATGG  52 9
CXD92_RS16285 NONE
CXD92_RS16280 NONE
        asnB NONE
CXD92_RS16270 NONE
CXD92_RS16265 NONE
CXD92_RS16260 3352403 .. 3352430 -    -9  -2.60571   AAGCGCTCAAGGAAG        CGCGGCTGGTCG AGTC CGACCCGCAGCA         GGCCGAGATCCTGGC  51 325
CXD92_RS16245 NONE
CXD92_RS16240 NONE
CXD92_RS16235 3346631 .. 3346656 -  -3.1  -3.54543   ATCCATTGCCGGAAA         CAGGCCGTGCA CTCA TGCGCCACCCG          CCGGCAGCGCCAGCC  49 12
CXD92_RS16230 3345236 .. 3345262 -  -5.9  -5.40072   CTCGTTGCAAAAAAA        GACGCGCAAGCA TACC TG-TTGGGCGTC         AAATCGATGTCAAAT  95 87
CXD92_RS16225 3343004 .. 3343023 -  -7.1  -3.16564   GCTGGAGCTGACCAA            CG-GCGGC AAGCA GCCGCTCG            ACCTGCCCTGGGGCG  53 285
CXD92_RS16210 3339214 .. 3339240 - -10.8  -3.18582   GACCTCAGCGACGAA         CAGAGCCGCG AGCTGAA CGCGGCGCTG         ATCCTGCTGCTGGCC  64 131
CXD92_RS16185 NONE
        lolB 3332945 .. 3332961 -  -6.5  -2.52896   TCACGGCGGAAGCGA              GGGGC TGGGGAT GCCCC              TATTCTAGACCGCCG  45 46
CXD92_RS16175 NONE
CXD92_RS16170 3331896 .. 3331938 -  -4.2  -5.79595   TCGTAAAACAAAAAA GCTGCTGAACTGGAGCCAGT GTCTG ACGGGCG-C-GTTCAACAGC TTTTTTATGTATTGG 100 43
CXD92_RS16165 3330795 .. 3330819 - -12.8  -4.07885   GATCGCCGGTTAAAA          CACGCGGCGC GACAT GCGCTGCGTG          GTTTTTGCGCGCCGC  83 81
CXD92_RS16160 3330046 .. 3330084 - -24.8  -2.91695   CGTATTTGTAAAGTA   CAAAACCCTGCGCATGCA AAT CGCATGCGCAGGGTTTCG   GGGACGTCGGGCACG 100 79
CXD92_RS16155 NONE
CXD92_RS16150 NONE
        ychF 3327399 .. 3327417 -  -6.7  -3.05816   GTATTGTTTATGCAA             CCCATTG ATTTA CAACGGG             CCAATCTGTCCACCA  51 78
CXD92_RS16140 3325994 .. 3326021 - -16.4   -3.4285   GCACTCAAGGGACAA        CGGCCCTATCCT GAAA AGGATAAGGCCG         TTCTACCCACTTCGC  85 67
CXD92_RS16135 NONE
CXD92_RS16130 NONE
CXD92_RS16125 NONE
CXD92_RS16120 NONE
CXD92_RS16115 3317233 .. 3317246 -  -3.1  -2.79183   GCTATCTGTATCATA               CG-GAC TCC GTCTCG               CCGAAAAGGTCACCA  40 7
CXD92_RS16110 NONE
CXD92_RS16105 NONE
CXD92_RS16100 3315357 .. 3315368 -  -5.8  -2.89475   GATCGACATAGCAGA                GCAG CAGA CTGC                 CAGCGGTCTTATGGA  46 240
CXD92_RS16065 3304931 .. 3304958 - -10.5  -3.08679   CGGGGCCAGGCAATA        GGCGAGCGCTCC CGGCC GGCGCGC-CGCC        GGCGCCGCGCTTGGC  62 49
CXD92_RS16055 3302351 .. 3302378 - -13.4  -3.34398   TGCCGCCTGGAAAGA        CCTGCTGCTGCC GCGC GGCAGCAGCCGA         TATGAAGAACTGCGC  74 237
CXD92_RS16025 3297165 .. 3297183 -  -4.6  -2.78596   GATGTTCGGATTATA             CCTACA TGTTTTC TGTAGG             TATATATATTTTCTG  43 85
CXD92_RS16020 NONE
CXD92_RS16015 NONE
CXD92_RS16010 3293450 .. 3293468 -    -3  -3.01001   TAGCGGGAAATGACA             GTCATGGA GTC TCCTTGTC             GTTGTATGCGAGGGG  42 163
CXD92_RS16005 3292394 .. 3292434 -  -4.7   -3.2794   GTCCATGGACACCAA TGG--GCCGGGCTGCGGGGC TTGC GGCCCGCA-CCCGGTAGCCA CCCGCAAGCCTAGTT  49 35
        modA 3291217 .. 3291261 -  -9.2  -2.64616   TGCCCAGGTAGACGA GGTAGGCGCCGCCGATCC ATTTCAGCA GGATCAGCGCCGGCGACC AGGCCTTGAGCAGGG  54 302
CXD92_RS15990 NONE
CXD92_RS15985 NONE
CXD92_RS15980 3289119 .. 3289147 - -11.6  -3.30771   GTACAGGGCCGAGAA        CGGGCCGCGCAG CACTT CCACGCGGCCGG        CCGAGCCGATGTCGA  68 419
CXD92_RS15970 3286810 .. 3286821 -  -7.2  -5.30616   CGAGGGAAATAAAAA                CGCC GGAA GGCG                 GTGGTTCATGGACTG  95 113
CXD92_RS15965 NONE
CXD92_RS15960 3286238 .. 3286264 - -13.7  -3.09831   CGTACCGCAAAAGGA        CG-CGGCCGCCC CGGG GGGCGGCCGTCA         TGGGGCGAGACCGAC  73 51
CXD92_RS15950 3284623 .. 3284639 -  -5.7  -4.36914   GTCGCGCCCACAAAA              GCAGGCC CGC GCCCCGC              CCGCTTAGCGGACCT  72 30
        modA 3283733 .. 3283743 -  -2.4  -2.61264   CTGGTCAGCGACAAG                 GGCG GGA CTCC                 TGCAAGGGGTTACAG  38 35
        modB NONE
        modC 3281538 .. 3281561 -  -5.2  -3.72576   TGCGGCTTTACGAAA          TGCGGCGCAGC TAC GCCGGGCC-CA          AGCCGCAGGGCAGGG  58 394
CXD92_RS15920 3278038 .. 3278059 -  -6.5  -2.87132   TCCTTGCCGCATATA           GCGGCGCAT ATGC ATGCGCCAG            GCCGAACAAGGGAAA  48 257
CXD92_RS15915 3276269 .. 3276319 -  -5.1  -2.50034   CATGAAGGGAAAACG CCCGGTGGAGCGCAGCGGCGCGGG CAGG CCCGCGCCGC-ATGGTCCGGTTGG GTCAGGCCTTAGCCG  44 34
CXD92_RS15910 3274989 .. 3275006 -  -9.1  -3.14132   TCCGGCGCGCATCAA             GCC-GGCG CTG CGCCAGGC             GCGCTTGCAGGCGCT  56 68
CXD92_RS15895 3271091 .. 3271115 -  -8.4   -4.1899   CGACCCTAGGGAAAA          CCCCGGGAGG ACGGG CCGCCCGGGT          TGGCGTGTTCAGCGC  76 34
CXD92_RS15890 NONE
CXD92_RS15885 3268412 .. 3268427 - -11.8  -5.18357   GAAGGCATGAAAAAA              GGCGGC CGCG GCCGCC               TTTTCCGGATGGACA 100 50
CXD92_RS15880 3267149 .. 3267183 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 259
CXD92_RS15840 NONE
CXD92_RS15835 3258658 .. 3258676 -  -2.2  -3.57263   ATTCCGACGCGGAAA             GCCCCTGG ACG CCCGGGAT             GGCCGCCGTTTCAGT  48 36
CXD92_RS15830 NONE
CXD92_RS15825 NONE
        xerC 3255573 .. 3255608 -  -8.9  -2.80816   GCCTGATCGAGTACA    CGCAGCGCGACGCCGA GTTCA CCGGCGTCGAGG-GCG    AAGTCCGGCACCGCT  52 436
CXD92_RS15785 3248772 .. 3248798 -  -3.8  -3.93556   ATCGATGCAACGAAA         GAAGATGG GGGCGGAATTT CCATCTTC         AAGAGGGGACGGAGC  59 76
CXD92_RS15780 3247338 .. 3247354 - -10.1  -2.57795   TCCACTATGAATCGA              TCCGGGC GCG GCCCGAA              TATTCGCGCCTGGCT  57 128
        dksA 3246776 .. 3246799 - -13.2  -5.07652   GGTCCGAAAACAAAA          GGGCTATGCC GTGG AGCATAGCCC           TGGTAATGCGTTCGG 100 76
        hslV NONE
        hslU 3244800 .. 3244825 - -11.9  -3.81027   TCCAAGTAAGGGAAA         GGCCGCGCTACA GCA CGTAGCG-GGCC         AGGTCCTGGCTGCCG  79 7
CXD92_RS15750 3243454 .. 3243464 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 43
CXD92_RS15745 3242432 .. 3242471 -  -9.4   -3.5361   GAACCATGCATACAA  CCTATTGAATCTTCACAC CTAG GTGTGAACTGTCAATAGG   TTGTATTCGTCCAGG  64 4
CXD92_RS15740 3241045 .. 3241062 - -11.3  -2.56596   GCGCGCATCAAGCGA             CAGCGCA TCGA TGCGCTG              CCTGGCCAGGGCCAA  59 364
CXD92_RS15700 NONE
        zapA 3232817 .. 3232831 -  -2.8  -2.95102   ACGGCAGGGACAAAC               CATGAA TAC TGCATG               AATACTGCGCGCGAG  42 55
        ssrS 3232593 .. 3232627 - -12.3  -3.05993   GGAGGGAGAGAGACA    TCCGAAGGCAGGCCTGC GAT ACAGGCCTGCCT--GGA    TAGATGCCCCGCCTG  67 27
        ilvD NONE
CXD92_RS15665 NONE
        msrA 3226798 .. 3226829 - -10.8  -3.69256   AGGCACCGAAGAGAA      GGGGCAGATCCAGG AATA CCTGGACCTGTACC       GCGGCGAAGGCATCC  74 458
CXD92_RS15650 3225175 .. 3225189 -  -4.9  -3.56643   CGGAGATCCTGCAAA               CCGCA TGATT CGCGG               TTCCGGCTTCGTCGC  52 289
CXD92_RS15645 NONE
CXD92_RS15640 NONE
CXD92_RS15635 3222692 .. 3222730 -  -5.3  -4.07568   GCTGTCGGGCCAAAA   CCCAACGCTTAACACTG ACTCG CAGCACTAAGCGTTGCT   CTCTCGCCTTCTGGT  64 72
CXD92_RS15630 3219457 .. 3219467 -  -6.8  -3.65314   TTGAATTTGGAAGAA                 GCAC AGC GTGC                 GCCTGGCAGTCGGTT  61 127
         rrf 3219248 .. 3219282 - -19.5  -4.59773   GCGTACCCCCAAAAA    CAAAACCCCGCGAGCC GTGA GGCT-GCGGGGTTTTG     AGCAATAAAAGCCTG 100 36
CXD92_RS15620 3218285 .. 3218305 -   -14  -4.54727   GCCTGCAAACGAAAA            CGGCTGGC ACGAA GCCAGCCG            TTGCGAGCGGAACCG 100 56
CXD92_RS15610 NONE
CXD92_RS15605 3214996 .. 3215050 -  -9.9  -3.56862   AGAAACCCGCCGAAA CCGCCAAGCC-CGCCGCGGCGCGCC CCAAGCC GGTGCG-CGCGGCACGGCTGAGCGC CTGGGATCTGCGCGA  67 285
        rnpB 3212902 .. 3212922 - -19.7  -2.52464   GGGCGCCGTAAGCCA            GCCGGCCGG ATT CCGGCCGGC            TGTCATGAAAATGCA  93 41
        mraZ NONE
        rsmH NONE
        ftsL 3210840 .. 3210861 -  -6.5  -4.16016   GGATTGTCGAAGAAA           GGCACCC-GC CTC ACTGGGCGCC           TCCGGCGGGCTGGTT  66 14
CXD92_RS15575 NONE
        murF NONE
CXD92_RS15565 NONE
CXD92_RS15560 NONE
        ftsW NONE
        murG NONE
CXD92_RS15545 NONE
CXD92_RS15540 3198980 .. 3198992 -  -3.3  -2.87132   GCGTCGTTCCACACA                GAGCG TCC CGTTC                AATCTTGTCGCGCCG  41 24
CXD92_RS15535 NONE
        ftsA 3196813 .. 3196824 -  -3.6  -3.55622   GTGAATCGCCTCAAA                GCCG AAGC CGAC                 CGTGGTCCGCAACGG  51 127
        ftsZ 3195357 .. 3195368 -    -3  -3.63968   TGCGAAAGCCGGAAA                TCTA CCAA TAGA                 CACCGGCATAACCGG  53 210
CXD92_RS15520 3194346 .. 3194374 - -14.6  -4.57073   CATCCCCGCCAAAAA        GCCTATGGCCGC TCAGC GCGGCCATAGGA        CGAAAACCGATATCG 100 52
CXD92_RS15510 3192690 .. 3192715 -  -5.4   -3.5394   AAACCCGCCGGGAAA         CGATCCAGTT TAACGC ACCTGGACCG          CAACGGCCTGCCGTG  54 77
        secA NONE
CXD92_RS15500 3188967 .. 3188980 -  -5.9  -4.19704   TAAGGTCAGTGAAAA               CGGCC TGCC GGCCA                TCCATGGATCACGCA  70 161
CXD92_RS15495 3187573 .. 3187604 -  -8.6  -2.82635   ATCCCGATCACTACA      GCCG-GCACGTCGCC TAC GCCGACCCGCACGGC      AGCTTCACCATTGCC  53 368
CXD92_RS15485 3186449 .. 3186471 -  -4.8  -2.57132   GCCCTTTTCGATAAG           GGGCGC ATTATGCCGCA GCGCCC           GCGCCGCGCGTGCGC  42 10
CXD92_RS15480 NONE
CXD92_RS15475 3184582 .. 3184613 -  -4.3  -2.62396   TACCTTGCGAGATGA      CGGGCCTGGCATG CCCCGC CAGGCAAAACCCG       TTCACGGCGCACGCC  42 79
CXD92_RS15470 3183671 .. 3183689 -  -6.7  -4.37092   ATGGTTTCCAGAAAA            TCGGCCGC ATCG GCG-CCGA             TACCCGCCTGGGCAT  72 212
CXD92_RS15430 3175920 .. 3175933 -  -5.9  -3.20991   TCCAACCGAATTCAA               GCCGA CAGG CCGGC                CACGCTGCGATCCAG  51 8
        aroQ NONE
CXD92_RS15420 NONE
        accC 3173061 .. 3173111 -  -8.8  -2.55668   GAGTTCGATATGAAT CGCGTCG--CGCGCGGCGTCGGGC ACCAG GCCCGGCACGGCGGGGTCGTCGCG GTGCCAGCTGGGCAC  52 422
CXD92_RS15405 NONE
CXD92_RS15400 NONE
CXD92_RS15395 3169775 .. 3169793 - -13.1  -5.40072   GCCGCCGCAAAAAAA             CGCCCGC ATGAA GCGGGCG             TCTTGCCGGAAGCAG 100 48
CXD92_RS15390 3169240 .. 3169277 -  -4.8  -2.78384   CGGCGCCCCAGTACA  GGCC-CAGCGAC-AGCGC GACG GCGCTTGCCATCGCGGCC   AGGTGGGACAGCAGG  43 44
CXD92_RS15385 NONE
CXD92_RS15380 NONE
CXD92_RS15375 3166867 .. 3166882 -    -6  -2.56838   TAGATCGAAATACAT              GCCGCG CACT CCCGGC               GGATCAGATAGGACT  46 29
CXD92_RS15370 3165407 .. 3165419 - -10.5  -3.53091   ATTCGGCGTCTGAAA                CGGCG CTA CGCCG                CCGCCGGAATCGCTG  67 18
CXD92_RS15340 3155798 .. 3155813 -  -3.3  -3.53012   TGTTTTCGCCGCAAA              CGAAA TATTTG TTTCG               CATTATAGGGATTAC  49 155
CXD92_RS15335 3155144 .. 3155158 -  -5.6   -4.6951   ACCACGCAAAACAAA               CACGAC AGC GCCGCG               TGCCGGACTGCCGAC  77 185
CXD92_RS15330 3154533 .. 3154588 -  -3.3  -3.40522   ACTTTCGGACGACAA CGACATGGCGGGTAGCGGCGGC-GACGT GGG AAGTCCGCCACCT-TACCCGA-ATGGCG CGCCGCTGGCGACAA  48 44
CXD92_RS15325 3153071 .. 3153093 - -11.2  -3.01712   GTTCTGCGGCGAATA           CCAGCCCGCC CCC GCCGAGCTGG           CGGCCCAGCACCTGA  62 283
CXD92_RS15315 3149146 .. 3149180 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS15295 3145722 .. 3145732 -  -2.4  -3.78934   TGTTGGTCACAATAA                 GGCG GAT CGCA                 GAGGATCGCGAAAGA  54 126
        dbpA 3144334 .. 3144348 -  -4.2  -3.28712   CCGCCGCGCTCAGAA               CTCTTC CAG GAAGCG               CATGCGGAACCGCCG  47 5
CXD92_RS15285 3143308 .. 3143337 -   -12  -3.16564   CGTGCAGCCCATCAA       CCGGCTGTGCGC CGCGGT GCGCGCCGCCGG        CGGCAGCGTGGTCTG  68 521
        pmbA 3137496 .. 3137521 - -19.1  -3.02096   GCCATGAACGAGACA         GTGCCTGTCCC CACG GGGACAGGCAC          CCTGCCGGCGCCGGC  90 51
CXD92_RS15245 3136054 .. 3136088 - -21.5  -3.53012   GGCGTTGCGCCCAAA    CAG-CAGGGGCCGCCC CGAA GGGCGGCCCCTGGCCG     GACCGAAACGGCGGC 100 45
CXD92_RS15240 NONE
CXD92_RS15235 3134946 .. 3134975 - -20.9  -3.28791   ACCGGGGCGCCATAA       GCAAAAAGGCCGC TTTC GCGGCCTTTTTGC        GGGACATTAGCGCTT 100 32
CXD92_RS15230 NONE
CXD92_RS15225 3132923 .. 3132942 -  -4.2  -2.80074   GCCCGGATAAGATCA            CTATAGCG CAGC CGCGACAG             GACTCAAAATTCCAG  41 29
        erpA 3132434 .. 3132459 - -18.3  -4.54727   GCGCCCAAACGAAAA         GGCCCTCCGGC GCAT GCCGAAGGGCC          TCGATCGCGGACCGG 100 53
CXD92_RS15200 3127317 .. 3127327 -  -4.6  -3.30124   TGGGACCCTCGATAA                 GAGG CTA CCCC                 ACCAACTTAACACGC  49 19
CXD92_RS15195 3126581 .. 3126602 -  -2.9  -4.62069   CGTCTACCGCAAAAA           TGCCTCAAG TCGG CATGAGCCA            GGCTCAAGCAAGCCC  71 52
CXD92_RS15190 3125107 .. 3125128 - -15.9  -5.30155   CCATCAATGAAAAAA           GACAGGCCC TTGC GGGCCTGTC            TTGCCGGCGGCGGGC 100 59
        nrdR 3124193 .. 3124217 -  -8.6  -2.90194   ACGGCCGCAACCACA         TGCACCCCGGC GTGC ACCG-GGTGCA          GGACGCCATCGTGCA  54 330
        ribD 3121547 .. 3121561 -  -9.2   -2.9006   AACCCATCGGATAGA               CGCGCG CCA CGCGCA               CCGCGTTCCGATCGC  56 98
CXD92_RS15150 NONE
CXD92_RS15145 NONE
CXD92_RS15140 3117177 .. 3117219 -  -2.5  -3.72576   CGCTGGCGCAGCAAA GCTGCG-CGCGGCTGGCCGAC CTG GACGGCCAGC-GCTTCATCGC GTTCTCGCGCGAGAA  53 380
CXD92_RS15130 3115244 .. 3115278 -  -6.3  -3.65522   CATGCAGGGCAACAA    CACCGGCCTGCTCGTCG GTC CGGCG-GT-GGCCGGCG    CCATTGCCGGCGCAT  57 138
CXD92_RS15120 3113150 .. 3113195 - -15.3  -3.05498   CATGCGATATATATA CACCGGC-CGGCGCGGCCGATG CGG CGTCAGCCGCGCAGCGCCGCCG CGCCTTCGCGCAGGC  77 6
CXD92_RS15110 3111448 .. 3111483 -   -19  -2.99319   AATGTCGGAGAGAGA    GGGGGGTGCCTGTCCC CGCC GGGACAGGCACCCCTT     GCCACGGGTCGGGAC  90 93
CXD92_RS15105 3110225 .. 3110255 -  -7.4  -2.66969   TATCAAGACAACGGA       GGGAGCGCGGATCG CAG CGATCCGCGGCAGC       GGTTTCCCGGGCGGC  50 175
CXD92_RS15100 NONE
CXD92_RS15095 3108456 .. 3108469 -  -4.5  -3.35813   CTTGATTTCAATCAA               GCTGCG CTT CGC-GC               TCCGGGCCGGGCTTC  51 4
        cyoA NONE
        cyoB NONE
        cyoC NONE
        cyoD 3104298 .. 3104331 - -28.3  -3.86015   CACCCCCGCCACAAA     CGACAACCCCCCGGG CAAG CCCGGGGGGTTGTCG      GCGAACCAAGGCCGG 100 74
CXD92_RS15040 NONE
CXD92_RS15035 NONE
CXD92_RS15030 NONE
CXD92_RS15020 3093123 .. 3093139 -  -5.7  -3.44229   AGCTTACGACGACAA              GGCGCGC CCG GCACCCC              CGGGATTGCACCCAG  53 54
CXD92_RS15015 3092381 .. 3092431 -  -2.3  -2.62184   CCGGCGCCTACATGA TGGCCCAGGCGATGGGC-GCCG-GC CTG GCGCGTCCGCCCGTCGGCTGGCACG TCATGGCCGGCCTGG  38 227
CXD92_RS15005 NONE
CXD92_RS15000 NONE
CXD92_RS14995 NONE
CXD92_RS14990 3089568 .. 3089578 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS14985 3088277 .. 3088301 -  -4.1  -3.53012   TTCGGTTCGGCCAAA          TCGGTGCGC GCCCCCA GCGCTCCGG          TACGCCGCAAGGCTG  49 288
CXD92_RS14975 3087147 .. 3087158 -  -3.6  -3.48395   ATTCCGTCTATAGAA                CGCG ATGA CGCA                 GGGCAGGCAGGCTGG  49 6
        tldD 3085610 .. 3085627 -  -6.9   -5.9873   CTAGCACAAAAAAAA             CCGCGCG TCAC CACGCGA              TTTTTCCAGGCCAGG 100 66
        aroG 3084036 .. 3084056 -  -9.7  -2.52464   GCCGGCGCGAATCCA            TCATCGGGG CAG CCACGATGA            AGGATTACGCCTTGT  55 307
CXD92_RS14955 3070070 .. 3070092 - -19.2  -4.72272   GGCGGGCATGAAAAA           GCCCACGCGA CCT TCGCGTGGGC           TTGCCGGGCACCGCG 100 57
CXD92_RS14950 NONE
        glcE NONE
CXD92_RS14940 3065689 .. 3065724 - -15.4  -3.68619   TGGAATTCATCGAAA    CGCGCGTCAAGCCC TGGGTGGC GGGCACGACGCGCG     TCGATACCGGCCGCC  88 408
CXD92_RS14925 3061764 .. 3061801 - -20.5   -2.6563   CCGTGGAATAAGGCA   CGGGGCC-GGTGCGGCGC ATG GCGCCGCGCCGGGGCCCG   CCTAACGGCGCGCGC  95 27
CXD92_RS14895 NONE
        mnmA 3054422 .. 3054454 - -11.1  -3.73775   CCCAGGTTTATGAAA      CCGCTGTGGCGGCCG CGG CCGCGGCCACCGCGA      GACCGGCGCGCCTCC  73 63
CXD92_RS14885 3053481 .. 3053536 - -24.2  -3.05596   GACCGCCTGACCGAA CCGGCGTGCAATGAAAAAGGCGGCTC GCAT GAGCCGCCTTTTTCATTGCCGGCCAC CCTGGCCGCCGACCG 100 62
CXD92_RS14875 NONE
CXD92_RS14870 3050755 .. 3050770 - -10.4  -5.96521   ACGAACGAAAAAAAA              CCGGTC GCGC GACCGG               TTTTTTTTGCCTTGC 100 62
CXD92_RS14855 NONE
CXD92_RS14850 3047048 .. 3047082 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS14830 NONE
CXD92_RS14825 NONE
CXD92_RS14820 NONE
CXD92_RS14815 NONE
CXD92_RS14810 3040882 .. 3040899 -  -2.6  -2.66869   ATATGGAAGAACTCA             CCGCCA TCTCCT TGGCGC              CGGCGCGCCGGCGCG  38 49
CXD92_RS14805 NONE
CXD92_RS14800 NONE
CXD92_RS14795 NONE
CXD92_RS14790 3037507 .. 3037548 - -14.5  -3.53012   GCTTGTCGGCCGAAA GCACGCGCGCCGCCGGCCT GTCCTG AAGC-GGCGGCGC-CGCGC GGACGCGGCGCGCCG  81 43
CXD92_RS14775 NONE
CXD92_RS14770 NONE
CXD92_RS14765 NONE
CXD92_RS14760 NONE
CXD92_RS14750 3030167 .. 3030222 -  -7.2  -3.06696   TCGCGTCGGAATACA GGCCCAGGCAGCCGTGGCTGATGCGC CCGC GCGGCTCGACCGCGGTGGCCTCGACC ATCACCAGGCCGGCG  51 205
CXD92_RS14725 3026609 .. 3026623 -  -3.5  -2.72344   TTCGAGTTCGAATTA              GCGCGC ATGG GCG-GC               CTCCAGCAGTTGGAC  41 8
CXD92_RS14720 NONE
CXD92_RS14715 3024864 .. 3024880 - -10.8  -3.31144   GCCCGAGGGCTACAA              GCGCCG CTCGC CGGCGC              TCGATACCTTCAGGC  66 35
CXD92_RS14700 3021850 .. 3021865 -  -2.5  -3.33696   CTCCTGGGTAATGAA              CCAGGC GGTCG GCC-GG              CTCAGTTGATCTGTA  44 27
CXD92_RS14695 3020422 .. 3020452 - -21.8  -3.23899   GCTCAAGTAAGGCAA       GCCGCCCGGCCGGC ACG GCCGGCCAGGCGCC       GCTCAGCGCGGCGCG 100 28
CXD92_RS14685 3018346 .. 3018382 - -23.8  -4.26076   GCACCGCCATGAAAA   GGCGCGG-CGGCCTCCC GCGA GGGAAGCCGTCCGCGCC    GGGATGAGCGGCGGG 100 70
CXD92_RS14680 3017457 .. 3017490 -  -8.7  -3.18681   CGCGAACCCGACGAA     CTGCTGACGCCGGCCC AGC AGGCCGGCAAC-GCCG     AGCACTACGCCCGCC  56 400
CXD92_RS14665 3014330 .. 3014372 - -12.6  -3.16564   GGGCTACCTGATCAA CGCGGCGACGACCACGCTGG ACA CCAGCACCATGTTCGCCGCG CTGATCAGCCTGGCC  68 140
CXD92_RS14630 3008548 .. 3008558 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 178
CXD92_RS14625 3007499 .. 3007513 -  -3.5  -2.53382   ACGAGGCGCAAGTCA               TGCCC TCGAT AGGCA               GGCTGATGGCGCCCG  40 56
CXD92_RS14620 NONE
CXD92_RS14615 3004284 .. 3004305 - -12.9   -3.8591   TCCTACAATGAATAA           CGGCGCGGG CACG CCCGCGCCC            GCGGATACCGACACG  83 52
CXD92_RS14610 3002874 .. 3002899 -  -3.1  -3.15544   GCTGATGCTGACCAA         GCGCGCCGCCA GCTA TTACGCCACGC          CGCAGATCGCCTTCG  43 186
CXD92_RS14600 NONE
CXD92_RS14595 NONE
CXD92_RS14590 NONE
CXD92_RS14585 2998008 .. 2998018 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 154
CXD92_RS14580 2996531 .. 2996541 -  -8.2  -3.13899   AAGCGTGCAGGAATA                 CGCC CTG GGCG                 GCATGTACGATTTCG  56 488
CXD92_RS14565 2993249 .. 2993283 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS14550 2991272 .. 2991285 -  -3.8  -3.53224   CATTTGCCCGTCAAA               GCGA TCAAAG TCGC                CGCGAACGCGCACCC  51 314
CXD92_RS14540 2989355 .. 2989370 - -10.4  -2.89881   TATTCATTCGACACA              CTGCGG CGAA CCGCAG               CCCTGTGCGCATTGC  59 243
CXD92_RS14530 2988933 .. 2988948 -  -6.1  -3.31461   CACCCACTGGGACAA              GCGTG TCTCGC CACGC               AAAGACACCCGGACC  53 55
CXD92_RS14525 2987678 .. 2987706 - -17.5  -4.11216   CCGCCATTTTTAAAA        GGCCTTGCAACGC ATC GAGTTGCAAGGCC        TTGGTTTCTAGAGCC 100 127
CXD92_RS14500 2985159 .. 2985169 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 65
CXD92_RS14495 2983975 .. 2984031 -  -7.9  -3.63694   AGGCAGCTTCAAGAA GCC-CGACGCCGGCG-TGCATGTCGGGCC GCT GGC-CGCC-CGCGGCGCCGGCGCGGTGGC CCTGAGCGTGCTCTT  60 149
CXD92_RS14475 2980239 .. 2980263 -  -5.6  -3.91897   CGTTGCACGGATAAA         GACGGGCC-GC GACG GCTGGCGCGCC          AGGACGAGGCTGTCC  63 51
CXD92_RS14420 NONE
CXD92_RS14415 NONE
CXD92_RS14410 NONE
CXD92_RS14405 NONE
CXD92_RS14400 NONE
CXD92_RS14395 NONE
CXD92_RS14390 2965955 .. 2965982 -  -4.7  -4.07568   CGGCGTGGCGGAAAA        GGCCGCCGCGT TCGTGC AGGCGATGGCC         GAGGTGGCAGGGGCG  63 253
CXD92_RS14345 NONE
CXD92_RS14340 NONE
CXD92_RS14335 2954111 .. 2954135 -  -3.4  -3.61517   ATTCGTCGTGAAGAA          GGATCCGGCC CTGAC GGCCGAAGCG          GTGCTGCAATGGTGC  51 154
CXD92_RS14325 2951175 .. 2951211 -  -5.1  -3.13403   GGTGCGGCACGAAGA  CGGCTCGCTGGCGAC-GC TGCG GCTGCTGCC-GCG-GCCG   CTGACGCGCACGCTC  47 132
CXD92_RS14315 2949255 .. 2949281 -  -4.3    -3.445   TTATGCAGGAAAAAC         GTGTCCTAAGC GCGCG GCTCAGGTCGC         CAGCTTCACGATTCC  51 17
CXD92_RS14310 NONE
        mgtE 2947174 .. 2947184 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 157
CXD92_RS14280 NONE
CXD92_RS14275 NONE
CXD92_RS14270 NONE
CXD92_RS14265 2938375 .. 2938391 -  -2.2  -3.13522   ATCGCGGGATCAATA              GGAGAA TTCAT TTCGCC              TTACCTGTCACGGGC  42 176
CXD92_RS14260 2937410 .. 2937423 -  -2.3  -3.09933   CGGCAAGCCATGCAA               TGCTG GCCC CGGCA                AGGGATAGCCCGCCA  42 190
CXD92_RS14255 2936970 .. 2936984 -  -7.1  -2.70932   TGGGTCTGCCAACCA               GGCTC TGTCT GAGCC               CTGTTACTCGGCCGC  48 29
        priB NONE
        rpsR NONE
CXD92_RS14240 2935742 .. 2935758 - -10.8  -5.75342   GCCCTCGAAAAAAAA              GCCGGC ACCAG GCCGGC              TTTTTTCAGGCATGC 100 48
CXD92_RS14235 NONE
CXD92_RS14230 2933290 .. 2933323 -  -2.9  -4.56597   CTGCGGCTCGAAAAA     GAGCCTGGCCAGCGG TATC CCGATGGCCCAGGTG      ATCTTTGCCGGACAG  71 160
CXD92_RS14200 2927233 .. 2927247 -  -2.1  -3.07935   ATCGGATTCATTTAA               GCAAA CCGTC CTTGC               GGAACATATCCTTGA  41 3
CXD92_RS14195 NONE
CXD92_RS14190 2924458 .. 2924495 - -28.5  -4.26076   GGACGGCCATGAAAA   GGCAACCCCCGGGCGCC TTGC GGCGGCCGGGGGTTGCC    CTTGCAAACAGCCTG 100 51
CXD92_RS14185 2923999 .. 2924023 - -17.1  -4.36914   GCTTGCGCGAGAAAA          GCCCGCCAGCA TCG CGCCGGCGGGC          TTTTTTTCACGGTTC 100 88
CXD92_RS14180 NONE
CXD92_RS14175 2921636 .. 2921653 -  -4.1  -2.52464   CGGTGCCCGAAGGCA             CGCAGGTC TTT GACCC-CG             TACCAGCGGTGGCTG  40 130
        garL 2916983 .. 2917000 - -11.3   -4.0616   TACGGCAAGCAGAAA             GGATGCC CGCG GGCATCC              TTTTTGTTTTGGCGC  81 82
CXD92_RS14090 2907722 .. 2907743 -  -2.8  -3.25072   CGCATCATAACCGAA           CCGCCGCG CCGCCC CCCGGCTG            CCCGCAACGCCAGCA  46 109
CXD92_RS14085 NONE
CXD92_RS14080 2905575 .. 2905595 - -19.7  -3.75153   TGGCTGCAATGCAAA            CGGCCCGGC AGG GCCGGGCCG            TCTCGATCGCACGTG 100 47
CXD92_RS14075 2904080 .. 2904103 -  -6.6  -3.05343   CGCAGATGTCCAACA          GACGGACGCC AAAC GTGGTCCGTC           TATTCCGTGGACGCC  49 25
        pcaF 2902738 .. 2902753 - -10.4   -5.1925   CCAGAACGCAAAAAA              GGAGCC CTAA GGCTCC               TTTTTGCCATGCCGG 100 54
        clpS 2901255 .. 2901273 -    -8  -4.19704   CAAGGCCAGGCAAAA             CGACGCGG CGA CCGCGCCC             GATGCGGATCAGGTC  74 34
CXD92_RS14050 NONE
        pbpC NONE
        clpA 2891451 .. 2891464 -  -4.5  -2.94747   GCAGGCGATCAGAGA               GCGTG GATC CACAC                GGTCAGTCGATCAGT  45 28
CXD92_RS14035 NONE
CXD92_RS14030 NONE
CXD92_RS14025 2887755 .. 2887783 -  -5.3  -3.16564   CGCGTACGGTATTAA        GGTTAACCCGTAT ACG AAAAAGGTTAACC        TTCTGTTTTCGCGTC  49 20
CXD92_RS14020 2883523 .. 2883533 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 292
CXD92_RS14015 NONE
CXD92_RS14010 2881307 .. 2881339 -   -17  -2.71712   GCGGCTGCGGCAAAT     GGCGGCGCAGCGCCC CGGG GAGC-CCGCGCCGCC      GGCACAGGCCGATCA  80 38
CXD92_RS14005 NONE
CXD92_RS14000 NONE
CXD92_RS13995 NONE
CXD92_RS13990 2877636 .. 2877665 -  -3.3   -3.9461   GTTCCGCAAGAAGAA       CCGGCGCCCGTGC GTGC GGACTGGCTCAGG        CCTCGACTTCGCCCA  58 21
CXD92_RS13980 2875567 .. 2875582 - -11.8  -5.86061   CCCCACCAAAAAAAA              CCGCCC CGAG GGGCGG               CTTGAAAATCGAACG 100 58
CXD92_RS13960 2869552 .. 2869564 -  -6.2  -4.15565   CCGACGATGGCAAAA                GCGG GCAGG CCGC                TGCCCAGATGGGTCT  66 211
CXD92_RS13950 2866642 .. 2866675 -  -5.8  -2.64616   GCGCCAGCCAGATGA     GCGGCGACGTGCTG GTGGTG CAGATCGCCGGCGC      GGCGCTGGCCATCGT  45 443
        cyoB NONE
        cyoC NONE
        cyoD NONE
CXD92_RS13920 2860655 .. 2860687 - -14.1  -3.53012   GCGCCCGGGCGCAAA     CGCG-GGCGGCGCG CTCAGC CGCGCCGTCGCGCG      CGCAGCTCGTGGCGC  78 7
CXD92_RS13915 2859878 .. 2859911 -  -5.1   -4.1899   GGATCGGATTGAAAA     GGGCGGC-CGCGCTCA GAC CGAGCGCGTGATGCCG     CCGTCGATGCGGATG  69 4
        hutG 2858864 .. 2858898 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS13890 2854104 .. 2854125 -  -7.9  -3.78419   GGAGGAAAGATACAA           GGCACCCCG TCAT CAGGACGCC            TGGTGCCTGCCCGCG  66 16
CXD92_RS13885 2852742 .. 2852760 - -13.8  -3.21099   TGTCCCCATGACGAA             CGGCCGCC GCG AGCGGCCG             TTTGCTTGTCTGGCG  73 173
CXD92_RS13870 2850247 .. 2850268 -  -2.8  -2.64616   CCGCCAGGTACAGCA           GGCCCTGG TTCATG CCTGGCCC            GCCGCGCAGGGCAGG  39 13
CXD92_RS13865 2849344 .. 2849373 - -23.7  -3.53224   GACTGCCGCGGCAAA       GGGAGCCTGTCCC CGCT GGGACAGGCTCCC        GGGTATGTAGTTACC 100 36
CXD92_RS13850 2846302 .. 2846319 -  -2.5  -2.57344   TACGCGGCGCACAAT             CCCGGGC TGAA GGCCGGC              GCGGCCTGGTACGGT  38 356
        moaC NONE
CXD92_RS13830 NONE
CXD92_RS13825 NONE
        moaB NONE
CXD92_RS13815 2839066 .. 2839093 - -21.4  -2.70932   TCGGGGGGTGAACGA        GGTGCCTGTCCC CGTG GGGACAGGCACC         TGCGGTGTCCCTCGG 100 138
CXD92_RS13800 2835672 .. 2835682 -  -5.4  -4.09243   CATAGGCGCGGAAAA                 TCTC GAC GAGA                 AGAAAACATATTCTC  64 105
CXD92_RS13795 2835029 .. 2835046 -  -9.8  -4.65895   CGCTCCATGTAAAAA             CCCGGC CTGCGC GCCGGG              TTTTTACATGCCGCG  93 54
CXD92_RS13785 NONE
CXD92_RS13780 NONE
CXD92_RS13775 2829774 .. 2829803 -  -7.7  -3.28712   CGCGCTGGCGCACAA       GGCCGCCGC-GCGC GGC GCGCTGGTGCAGCC       GGCCGCCTACACGCT  55 297
         ggt NONE
CXD92_RS13740 2822309 .. 2822367 - -21.6  -4.65895   GTCGCCACCGAAAAA CGGGCGCGGCGGCGCCCGCGC-GCCGCG CCGAT CGCGGCAGC-CGGCCGCCGCTGCGGCGG CCCGCCGCCCCCACC 100 45
CXD92_RS13735 2820982 .. 2821029 - -11.9  -2.62184   TGGCGCGCGAGATGA CGCTG-TCGGTCCAGCCGCCGA AATAG CCGGCGGCCAGTCCGAACGGCA CCCCCACCGCCAGGG  61 344
CXD92_RS13710 NONE
CXD92_RS13705 2816288 .. 2816303 -  -2.4  -4.10657   CGATATCCTCGAAAA              GCTGGG TATC CCCGAC               AAGGCCCTGGTGCTG  61 414
CXD92_RS13695 2814618 .. 2814653 -   -11  -3.97636   ACTGGAATGGAGAAA    CCGGCGGCGCCGTCAGG CCG CCTTGCGGCGC-GCCTG    CTTGTCGGCGTGGGC  79 2
CXD92_RS13690 NONE
        paaI NONE
        paaJ 2812600 .. 2812618 -  -5.9  -3.37796   CTTCACCAGCGAGAA             CACCGGC GTGAT GCCGCTG             CCCACCGCGAACGCC  55 405
CXD92_RS13665 NONE
        paaN NONE
        paaB NONE
        paaI NONE
        paaF 2806438 .. 2806469 - -18.8  -3.55444   CGTCTACCCCTGAAA      CGGCAACGCCGGCCA TGG CGGCCGGCGTTGC-G      CCCTGCGAACCCGCC  95 45
CXD92_RS13635 2804363 .. 2804397 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS13605 2795966 .. 2795987 - -14.5  -5.55769   CGGGACAATAAAAAA           CGGCCTTTC TCGC GAAAGGCCG            TTCGTAGGGAGCGCA 100 50
CXD92_RS13600 2787910 .. 2787944 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS13570 NONE
CXD92_RS13565 2782304 .. 2782327 -    -8  -3.27475   TCCCCGACCACAACA          GCCAGTGCCG CAAC CTGCACGGGC           ACCGGTACGTGCTGG  55 406
CXD92_RS13550 2781039 .. 2781076 -  -6.8  -3.53012   GCGCCGGCGGGCAAA   CAGCCCGGCGCGCGCT TCAGTC ATCGCGCACCCTGCCG    CGCAGGCGCTTGGTT  58 4
CXD92_RS13545 NONE
CXD92_RS13540 2779577 .. 2779588 -  -7.2  -3.72576   TGCTGCTGCAGGAAA                CGCG CGAG CGCG                 GCTACGCGGTGTGCG  64 326
CXD92_RS13530 NONE
CXD92_RS13525 2776444 .. 2776485 - -15.7  -2.52234   ACAAACGTCATGAAC GCGCATGGATGGCGGCGGC GCTG GCCGCCGGCAGCATTGCGC  TGGGCGGCGCCGTGC  69 493
CXD92_RS13505 NONE
CXD92_RS13500 NONE
CXD92_RS13495 2770772 .. 2770825 -  -5.2  -3.86897   GGCACGCGGCATAAA GGC-CGGCGTGGGCCTGGCGCAGCAT GGCG ATGG-ACGACAGGGCCACAGCGCGCC CGTGACCAGAACGGC  60 390
CXD92_RS13490 2770249 .. 2770300 -  -2.2  -4.59773   GGTGACGCTGAAAAA GCTGGACGGCTACGC-GCCGGTCCT GGTCG AGG-CCGCCCGCG-AGCTGTCGCGC CGTATTGGCGGCTGA  70 48
CXD92_RS13470 2764642 .. 2764658 - -10.8  -3.13403   CGGTGCCCACGAAGA              CGCGCC GGTCG GGCGCG              ATGATGTCCTGCACC  64 138
CXD92_RS13460 NONE
CXD92_RS13455 NONE
CXD92_RS13450 2760405 .. 2760424 -  -3.4   -3.5764   AACGCCAGTGGGAAA            CCCGCGCA GTGA TGTCCGGG             CTGTTCCACGACACG  51 510
CXD92_RS13430 2756864 .. 2756878 -  -2.7  -3.14881   GAATCGGGTCACGAA               GCTCC GGTCG GGCGC               GCGCCGCGCCTGTCG  44 4
CXD92_RS13425 NONE
CXD92_RS13420 2753033 .. 2753067 - -16.5  -2.53995   ATCCAGCTGAACTGA    CTGGTGTGCCTGTCCC CGCG GGGACAGGCAC-CCCG     TCATACGGGGGGCAG  77 61
CXD92_RS13405 2751384 .. 2751403 -  -4.8  -4.57073   CATCTGGTGGAAAAA            GGCCGCGC CCAT GCGCGCGC             GCAGCAACTCTACGC  72 359
        guaB 2745626 .. 2745663 - -22.2  -4.86731   CGGTTGGAAATAAAA   GCGCACCGGCCAGAACC TGGCC GGTTCTG-CCGGTGCGC   GATGCATTGCGTGAT 100 58
CXD92_RS13380 NONE
CXD92_RS13375 2743712 .. 2743728 -  -3.7  -4.12902   CAACTATTTGTAAAA              TATCTGA AAT TCAGCTA              TCAATCCACCGACTT  61 39
CXD92_RS13370 2743403 .. 2743413 -  -6.8  -3.16564   GCCCCATGTCACCAA                 TCCG CGT CGGA                 AGACCCTGCGGGACT  52 8
CXD92_RS13365 2741797 .. 2741847 -  -5.2  -3.75332   ATTCGCCAAGCCAAA GCCCAGGGCCAGCTCGCCGCCG ACACCAA CGAAGCCAGACTGGCCATGGAC CTGCTCGCCTACCAG  58 232
CXD92_RS13355 2739515 .. 2739537 -   -12  -3.58522   ATGACGATGCCGAAA           CTGGCCGG CGACAGC CCGGCCAG           CAAGCCCGGATTTGC  72 314
CXD92_RS13345 NONE
CXD92_RS13340 NONE
CXD92_RS13335 NONE
CXD92_RS13330 NONE
CXD92_RS13325 NONE
CXD92_RS13320 NONE
CXD92_RS13315 2731153 .. 2731174 -  -2.8  -2.74999   CAACCCGCAACAGGA           TCCGCGTC ATCCCG GGCGCGGC            GGCCGCCGACTGGCC  40 252
CXD92_RS13305 2729273 .. 2729286 -  -3.8  -3.64703   TCGCGGCCAGCGAAA               CAGC CGCCCT GCTG                GCCTCGCTGGCGCCC  54 440
CXD92_RS13290 2725766 .. 2725788 - -10.4  -2.81464   CGACCAGCCATGATA           CTGCGCGGCC CCT GCCCGCGCCG           CCGTCCTATTGCGTT  59 119
CXD92_RS13285 NONE
CXD92_RS13280 2724589 .. 2724627 -  -8.6  -2.70932   GGTTGCCGGCAAGCA   GGTGGCGCACGGACTGGC CGC GCGAGGCCTTGCGCCCGC   CTTGCGGCGGCCTAG  52 37
CXD92_RS13275 2723335 .. 2723349 -  -3.4  -3.35073   ATCATGGGCAAGGAA               GACGTG CTG CGCGCC               TCCAGGTCCGTCCCC  47 204
CXD92_RS13265 2721165 .. 2721211 - -14.5  -3.36273   CGGCCTGAAGATCAA CAACTCCGCGGCCGT-GCT-GCA AGC CGCCATCGACGGCCGCGGCGTTG CGCTGGCGCGCAGCG  79 298
CXD92_RS13255 2719623 .. 2719651 -  -2.4  -2.57931   GCCACCGCCGACAAT       GGCCACGCGCACGC TCA GCATGC-C-TGCCC       CTGGTCCACGGCCTG  38 11
CXD92_RS13250 NONE
CXD92_RS13245 2717426 .. 2717443 -  -5.5  -2.63596   GGTGATTGGACAGGA             CCGCG-GC CAG ACGCGCGG             ACTCAGTCTTGGTCG  44 28
CXD92_RS13240 2715764 .. 2715778 -  -9.2  -3.44146   CGCCGCGACAACGAA               CGCCGC CGC ACGGCG               CTGCTCGAGGCCATC  61 408
CXD92_RS13230 NONE
CXD92_RS13225 NONE
CXD92_RS13220 2712328 .. 2712340 -  -6.2  -3.31726   GGCCGTTATAGAACA                GCCG CGGAC CGGC                GCGCCCCCCCCCCCC  53 427
CXD92_RS13215 NONE
CXD92_RS13210 2709743 .. 2709764 -  -2.9  -2.94099   TCGCCTGACGAGATA           GGCCCACATG GTT CA-GCGCGCC           CCGCCGGTTTTCTCG  41 16
CXD92_RS13205 NONE
CXD92_RS13200 NONE
CXD92_RS13195 2706316 .. 2706336 -    -6  -3.53012   GCCGCCCCCCGCAAA            GGCCGCTG TCAGG CCACGGCC            GCCTCCCGCGCGCGG  56 13
CXD92_RS13190 2705106 .. 2705119 -  -3.7  -3.16647   TCCAGGCATGAAAAT               GCCAG GAAT CGGGC                CGGCTGCCCAGGGCA  45 85
CXD92_RS13185 NONE
CXD92_RS13180 2704128 .. 2704164 - -18.8  -2.70932   GGCCGGCGTCAACGA   GCGCGGCGCCGCGCTCGC CCC GCAAGCGCG-CGCC-CGC   CAGGCCATAGGCGGC  87 44
CXD92_RS13170 2702330 .. 2702344 -  -3.4  -3.57144   GGTTCCAGGCCGAAA               CCAGCG TGA CGGCGG               CGCTGCGCGAGCGCG  51 498
CXD92_RS13160 2700744 .. 2700754 -  -2.4  -2.80816   CCTGCAGGTAGCACA                 CCGG CGC CAGG                 GTCGAGGTGTTCTCG  40 310
CXD92_RS13150 2700429 .. 2700444 -  -3.2  -4.00066   TGGACAACTGACAAA              CGCTTT AACA ATAGCG               CGCCGATTGCGTCGC  58 98
CXD92_RS13145 2699233 .. 2699267 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 439
CXD92_RS13135 2697598 .. 2697635 -  -3.9  -3.56594   TGAAATTCGCCCAAA   GCCGGCC-CAACCCGCCG CTG CCCCAGGCCGCGGCCGCC   GACTATATGGGCACC  51 491
CXD92_RS13125 2695252 .. 2695265 -  -8.1  -3.28712   GGGCCTGGGCCACAA               GCACG GCAT CGTGC                TGGGCAACCTGGTCG  55 237
CXD92_RS13115 NONE
CXD92_RS13110 2693344 .. 2693362 -  -2.4   -2.8655   GCGAGGCATAGTAGA             TCTCCCTT ATC AAGCGAAA             GGCATCATCGCTTTC  40 16
CXD92_RS13105 2692923 .. 2692953 - -16.2  -4.09685   TTTGAGCCTTCAAAA       CGCAAACGGGGCCA TTA CAGCCCCGTTTGCA       GCGATCCGCGATGTA  95 50
CXD92_RS13100 NONE
CXD92_RS13095 NONE
CXD92_RS13090 2689099 .. 2689112 -  -2.3  -3.88137   ACAATTGCCGACAAA               GCGTA TCAC TCCGC                AGAGGCGGGGTCCGG  54 17
CXD92_RS13085 2688570 .. 2688599 - -15.8  -4.41047   AGCGCCCAAGGAAAA       CGCCGCC-GGTTC GCGAA GAACCAGGCGGCG       TCGCGGCCTGCCGTA 100 61
CXD92_RS13080 2688344 .. 2688378 -   -26  -3.45027   AGTCCCCACGAAAGA     CAAGGCCGTCAGTGAT GTG ATCACTGACGGCCTTG     GAACTACTGGTCGGG 100 33
CXD92_RS13070 2686229 .. 2686262 - -15.9  -3.14564   GCACGGGCCGAGGAA     GCGTGCCGGACTGCC CACG GGCAGCCCGGCGCGG      ACTACAGCTCCAGTT  78 27
CXD92_RS13060 2684660 .. 2684683 -  -8.8  -2.58892   AGGCAGATCAATTGA          GCGCCGCC TCGCGCAT GGCGGCAC           AGCCCCGCCCCGGCA  52 263
CXD92_RS13055 2684300 .. 2684323 - -14.6   -5.0925   TGCGAAAACGAAAAA          GGCCTGGCGA TGAA TCGCCAAGCC           TTTTTGATCTGGTTG 100 35
CXD92_RS13050 2683471 .. 2683516 - -12.7  -3.05844   TCGTGGACTTCAAGA CCCGCCGCATACAGCCGCGCA AGTACG TGCGCGGCCGTAT-CG-CGCG CATCCAGTTCTACAT  66 360
CXD92_RS13040 2682598 .. 2682628 - -10.4  -4.86621   ACGCCCAATGAAAAA      GCCGCCTTGGCGC CCTATC GCGGCA-GGCGGC       TGCGCACGGTGCGGC 100 59
CXD92_RS13035 NONE
CXD92_RS13030 2681607 .. 2681623 -  -7.3  -3.20348   GGGAGGAATACGGAA              TATACGC AAT GCGCATA              TTATTCGACCCCAAA  52 89
CXD92_RS13025 2680236 .. 2680294 -  -7.9  -4.07568   GCTGGGCGGGGAAAA GCGCGTCTGACGCGGGCTCGCGTGGCGC TGGC GCGCCACGCGATACGGC-TCAGTCCAGG CCGTGGAAGACGGAA  69 16
CXD92_RS13015 2678601 .. 2678621 -  -6.8  -3.40403   GCCCTTTCACTACAA           CCGCGCGCC GGTG GGCG-GCGA            AACCAGCCCGCCCGC  55 180
CXD92_RS13000 NONE
CXD92_RS12995 NONE
CXD92_RS12990 NONE
CXD92_RS12985 NONE
CXD92_RS12980 2672472 .. 2672482 -  -3.2  -3.05384   CCCCTGCGGACTCAA                 CCGA CCG TCGA                 GCGCCACAGGGCAAT  42 11
CXD92_RS12975 NONE
CXD92_RS12970 NONE
CXD92_RS12965 2668673 .. 2668687 -    -7  -5.15969   CCCCAAGGCAAAAAA               GCCTCC TCG GGGGGC               AGCAAGCCCGCATAG  93 161
        recA NONE
        recX 2662582 .. 2662628 -  -9.3  -3.33815   ACGGGCCGCAAGCAA GCCCCAGGCAGGCGG--GCCCGC ATC GCGCGCCGCCGCCCGCACGAAGC GGCATCGTTCAGTCG  61 34
CXD92_RS12930 2659029 .. 2659049 -  -6.7  -3.40403   TCCTGGGGAGTATAA            CGCAGCCGA TTG CCGGCGACG            CGGCCCGGGCCGACC  56 153
CXD92_RS12925 NONE
CXD92_RS12920 NONE
        sucD 2656247 .. 2656266 - -16.4  -5.78622   GCATGCGAAAAAAAA            CGGCCCGC GATC GCGGGCCG             TCCTGGGACAGGCGG 100 57
CXD92_RS12910 2655263 .. 2655305 - -23.5  -5.07652   GCGGCCAAAAGAAAA CGGGCTGGTCAG-CCCCGCC TGAA GGCGGGGCCCGAACAGCCCG CTATTGTAGTTCAGC 100 47
CXD92_RS12905 2654349 .. 2654382 -  -5.9  -4.03413   AGGGCGTCAGAGAAA     GCTGGAGACGATGAC CGAA GCCACCACCCCCAGG      ATGGCCAGCACGAAC  66 92
CXD92_RS12900 NONE
CXD92_RS12895 NONE
CXD92_RS12890 NONE
CXD92_RS12885 2649744 .. 2649761 -  -2.6  -4.23781   TTGATGAAAATGAAA             TCAGGC TTTGTC GCCGGA              CGCCGGGCCGGCGGA  62 8
CXD92_RS12880 2649110 .. 2649151 - -23.8   -4.2231   AAGCATGACGCAAAA CGGCGCGGATGCGAGCGGC TGCCT GCCG-TCGCTTCCGCGCCG CCGGCCGCCCCAGGC 100 53
CXD92_RS12875 NONE
CXD92_RS12870 2648087 .. 2648106 - -12.8  -5.07652   CGCGGCAAAAGAAAA            GCCCCCGG ATGA CCGAGGGC             TTGCATCATGCCGGC 100 50
CXD92_RS12865 NONE
CXD92_RS12860 2646163 .. 2646201 -   -11  -3.01712   CCTGCCGCGCCAAGA  TGGCGGTGCGCGG-GGCA GACGG CGCCGCCGCGG-CCGCCA  TGAACGCCGCGACCC  62 185
CXD92_RS12850 NONE
        cpaB NONE
CXD92_RS12840 NONE
CXD92_RS12835 2640412 .. 2640425 -  -8.1  -3.53012   GCCCGGCTCCTCAAA               CGTCG ATGG CGACG                ATGCGGCGGATCAGC  60 7
CXD92_RS12825 NONE
CXD92_RS12820 NONE
        folD 2637021 .. 2637035 -  -3.4  -3.75933   ATAGACGCGAGCAAA               TCCGCC GGC GGCGAT               TTCTCCGATCGCACG  55 187
CXD92_RS12795 NONE
CXD92_RS12790 NONE
CXD92_RS12785 2629284 .. 2629294 -  -6.8  -3.07816   GTGCGAGTTATCCAA                 GGAG ACG CTCC                 CGTTCGATATCGACG  51 7
CXD92_RS12780 NONE
        purU NONE
CXD92_RS12770 NONE
CXD92_RS12765 NONE
CXD92_RS12760 2624491 .. 2624512 - -14.5   -5.1287   TCCAGATTCAAAAAA           GGCCCAAAC TTCG GTTTGGGCC            TTTTTGTTTTTGCAT 100 53
CXD92_RS12750 2623093 .. 2623115 -  -9.8  -3.40403   GGCGCGCCAGGACAA           CGGCCTGTAC GAC ATGCAGGCCG           TACTGGGCCTGTAAG  65 76
CXD92_RS12735 2621157 .. 2621178 - -15.9  -6.10489   AACCGCAAAAAAAAA           CCTCCAGGC TTGC GCCTGGAGG            CAGGGTTGGTAGAGC 100 48
        hrcA 2617377 .. 2617394 -  -5.5  -3.54382   GCGAAGAAACACGAA             GACACCT CTCA AGGCGCC              GCCCCGCGCGCAGGC  54 62
CXD92_RS12715 2616243 .. 2616260 -  -8.3  -2.52676   CATTCGCGGAATGGA             CCGGCGC GCTC GCGCCCG              CCGCTTCAACCACAG  51 50
CXD92_RS12710 2615907 .. 2615932 -  -3.8  -5.52384   TTTCCAGGAAAAAAA         GCCCGGCTCC CATGAC GCCGCCGGAC          GGCGCGTCGCCGCCC  90 54
        grpE 2615243 .. 2615287 -  -5.6  -3.05384   CTCGGCGGGATCGAA TGG-G-GCGGCGGCCATGCCTG CTT CAGCCCTGGCCGGCGGACACCA CGACCAGCGCCGGAC  47 3
CXD92_RS12700 2614829 .. 2614847 -    -3  -2.78725   ATACGGTAGGAATCA             GGGTTTGA AAC TCAGTCCC             CCAGTAACTGGAGTT  40 55
        dnaK 2612802 .. 2612844 - -18.5  -3.27298   GTTCTGAATCATCAA CGCG-CGCGCCCGGTAGCTG GAAT CAGCTACCGGGCGTATCGCA CGTCATCGTTCGGCC  93 42
        dnaJ 2611530 .. 2611559 - -22.3  -2.88249   GACATCCGCGACAGA       GTGTGCCTGTCCC CGCT GGGACAGGCACAC        TGCTCTACGCCATGA 100 93
CXD92_RS12680 NONE
CXD92_RS12675 2607228 .. 2607259 -  -7.9  -3.85864   CGAGCACTACAACAA      GGAGGCCGGCGCGG TCTGG CTGCGCCGGC-TGC      TCGACGCCTGGCCCA  67 187
CXD92_RS12655 NONE
CXD92_RS12650 2603361 .. 2603389 - -16.7  -4.38712   CCGAGCGCTAGAAAA        GGAAAAGCCCCCG GAT CGGGGGCTTGCCC        GGCGCCGCTTACTGG 100 34
CXD92_RS12640 2601413 .. 2601437 - -11.4  -5.02074   CCATTCGGCAAAAAA         CCCGCTACCCC CATA GGGGC-GCGGG          TTTCTCGGCTGATGC 100 60
CXD92_RS12635 2600218 .. 2600235 -  -3.3  -2.74864   TGTAGAAGCAAATAC             CGGACCG GCCT CAACCCG              AAACGGAATCCCACA  40 83
CXD92_RS12630 2598857 .. 2598867 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS12625 2597463 .. 2597485 -  -7.6  -3.17212   CGACTACCTGACCAA           GCCGTTCGGC GTC GGCGAACTGC           TGGCGCGCCTGCGCG  53 393
CXD92_RS12590 NONE
CXD92_RS12585 2586422 .. 2586456 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS12555 NONE
        lolA 2579446 .. 2579466 -  -3.3  -3.05596   CACGGGCGGATCCAA           CG-CGCAT TACACC ATGCGGCG            GCCTTGGCCCGCAGG  42 74
CXD92_RS12545 NONE
CXD92_RS12540 2576625 .. 2576642 - -11.3  -4.98531   CGCCGAAATGAAAAA             CGGAACC CGCG GGTTCCG              TTTCTGGTTCACGTG 100 54
CXD92_RS12535 2575985 .. 2576002 - -14.1  -4.95957   CAAATCAATGAAAAA             GCCGCCC GGAT GGGCGGC              CTTTTTTTGCGGCAC 100 167
CXD92_RS12520 2574581 .. 2574594 -  -9.5  -3.28791   ACGGCTGGCGCATAA               CGGCC CGCG GGCCG                GTCAGCCTTCCTGGC  61 27
CXD92_RS12510 2572932 .. 2572953 -  -7.3  -2.78463   AGGCGCTGCAGCAGA           TCACGC-CCA GCA TGGCGCGCGA           GATGGTGTTCTTCCC  49 352
CXD92_RS12455 2559770 .. 2559818 -  -6.6  -2.70932   CGCCGCCGGCAATGA TGGCACGGATCCGTGACCGGGC GCGGTCA GCCCGGGC-CGGA-CCGCTCCT CGTTGTCCGCGGCGG  47 3
CXD92_RS12450 2558880 .. 2558890 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS12445 NONE
        yaaA 2557038 .. 2557075 -  -3.4  -4.21812   GCCGAGCGAAAAGAA  CAGGAAGACGCGTAAGCC TGCC GACAT-CGCG-CGTCCTG   TCAGGCCTGCTTGCG  63 26
CXD92_RS12435 2555340 .. 2555354 -    -7  -3.72576   CGGCGGGCGAGGAAA               CGCCCG AGA CCGGCG               AGCGCGCCGACGCCG  61 494
CXD92_RS12410 2551133 .. 2551160 -  -7.6  -3.88291   GATGACTCCTAGAAA        CGGGCCGCATTG TACG CGATCCGACCCG         AGTTGATCTCAATCC  66 34
CXD92_RS12405 NONE
        plsX 2549824 .. 2549840 -  -4.4  -3.14211   AGCTTTTTCCATCAA             GCGG-TG TCCC CAGCCGC              GCCGGGCGCGACGGC  47 5
CXD92_RS12395 2548787 .. 2548834 - -11.9  -2.50816   TCGGTATGGAGGAAT GGCGG-CGTGCGCGGT-CGCGCA CAGG CGCGCGCAGCGCGCCCTTCCGCC TACATGCGGGCCAGC  61 25
        fabD NONE
        fabG 2547022 .. 2547055 - -12.3  -4.03234   GCGTTTCCACAGAAA     CGCGCGGCTGGGC TTGGATGG GCCGCGCCGCGCG      CTTCTCACTATTGCA  83 33
CXD92_RS12380 2546574 .. 2546594 -  -4.5  -3.55563   ACGGCATTCCTGAAA            CCGCCCCGA TTC CCGGCGCCG            CCCCGAAGTGTTCGA  52 72
        fabF 2545204 .. 2545238 -  -6.5  -3.69216   CGGTTATCGAAAATA    CCGC-CGTCCGGGTTCA ACT CAAACCCG-ACGAACGG    CCATCGAACCGTTGG  59 9
CXD92_RS12370 NONE
        rpoE NONE
CXD92_RS12360 2543603 .. 2543616 -  -2.3  -3.54408   GCGCATGTAAAGCAA               CGGTG TCAT CAACG                TCCTGCTCCGGCGTC  48 20
CXD92_RS12355 NONE
CXD92_RS12350 2540967 .. 2540991 - -22.9  -4.65895   CGGGCGAGCCAAAAA          CGAGGGGGCGC CAT GCGCCCCCTCG          TTGCGGCAACCAGCC 100 62
CXD92_RS12345 NONE
        lepB 2538206 .. 2538219 -  -3.7  -3.17392   TAGCGGTCAATGGAA               GCGGC CAAT GCGGC                TCAAATCGCTGAAGT  45 3
CXD92_RS12335 NONE
CXD92_RS12330 NONE
        recO NONE
CXD92_RS12320 2534865 .. 2534891 - -15.9  -3.14344   GATGTCGCGGACGAA        CAG-GCCGCGCG GGCC CGCGCGGCGCTG         GGCGCGCTGGGCATC  80 157
        lptF 2526188 .. 2526213 -  -6.1  -3.01791   ACGTGCTGCCCAACA         GCCAGGTGGTGC TGC GCAGCACC-AGC         GTCATCGCCCAGTAC  48 280
CXD92_RS12265 2524082 .. 2524095 -  -2.3  -3.14132   CTTGCCGCCGATCAA               TAGCG ACTT CGCTC                ATTTCTCTGCTCCTC  42 124
        mmsA 2522519 .. 2522542 -  -8.2  -3.15544   CTGCAGGTTCATGAA          TTGGCCCCTGT TAG AC-GGAGCCAA          TTATAAGTAATATAG  56 98
CXD92_RS12255 2521362 .. 2521396 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS12245 2519896 .. 2519913 - -14.1  -4.41895   AAGGCCCAAGCAAAA             GCGCCCC GTCC GGGGCGC              TTTTGCTTGGGCCTC 100 77
CXD92_RS12230 2516358 .. 2516404 - -21.5  -2.62184   TGCTGGTGTAGAGCA GCCGGCGCTTGCCGGCGCGCGC ATCG GCGCGCG-CGCCCAGCGTCGGC ATGGTCAGCATGATG 100 294
         acs 2513041 .. 2513071 - -14.7  -4.17089   TGCAAAGCCGGAAAA      GGCACGGGCCGGTC ATGC GACCGGCCCG-GCT       GGCTACAGACTGACG  95 101
CXD92_RS12215 NONE
CXD92_RS12210 2511060 .. 2511085 -   -14  -3.28712   GCGGGCGGCTGAGAA         CGC-GCCGCGC TCAGC GCGCGGCCGCG         CAATGCCCGCGTACC  75 10
CXD92_RS12185 2505912 .. 2505951 - -14.2  -3.62597   GGTACGCGTGAAGAA  GGCCGGAATGCCG-GCGCC GCC GGCGCGCAGCTTCTCGGCC  AGCGTGCCCTGCGGC  80 439
CXD92_RS12175 2504855 .. 2504872 - -14.1  -5.75945   ATGGGCGAAAAAAAA             CGCCGGC TAAC GCCGGCG              CCTTACATACAAAAA 100 51
CXD92_RS12170 NONE
CXD92_RS12165 NONE
CXD92_RS12160 2500842 .. 2500865 -  -2.3  -4.71426   GGTTGAGGAAGAAAA          TGCGGCAGGC GCCAA GCC-ACCGCG          TTCAATACGCGCCGC  74 27
        gsiB NONE
        gsiC NONE
        gsiD 2497294 .. 2497351 - -13.4  -3.48276   CGGCCCTGGAGATAA CAGGGC-CGCCGCGCGGGC-GGC-CCG ACCGGCG CGGCGCCTGCATGCGCCGCGCGCCCTG CCCTACTTGCGGTCT  75 28
CXD92_RS12140 2496194 .. 2496206 - -10.5  -3.38291   GGGAGAATGTCAGAA                GGCCG TCT CGGCC                AGCCACTGGCGCCAC  65 7
CXD92_RS12130 2493370 .. 2493380 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 194
CXD92_RS12125 NONE
CXD92_RS12120 NONE
CXD92_RS12115 NONE
CXD92_RS12110 NONE
CXD92_RS12105 2488142 .. 2488188 - -14.3  -3.09581   CAAACGCGGAAGACA GCGGT-TTCCGGCCGGGCCGCG ATGC CGCGGCCTGGCCGGATTACTGA CCATTAACGCAGGTT  73 29
        ftsB 2487714 .. 2487729 - -10.4  -5.86332   CCAAGGCAAAAAAAA              CTCCCC TGGC GGGGAG               TGTTGGCGCGTCCGG 100 50
CXD92_RS12090 2485161 .. 2485181 -  -4.5  -3.04792   TGATCAGGCGCAAGA            GCGGCGTCA TTG CGGCGCCGG            GGAGCGACTGAGCCA  45 11
CXD92_RS12085 NONE
CXD92_RS12080 2483916 .. 2483943 -  -6.2  -3.39784   CCAGGCCGAACAACA        CGCGCAGCGCCTG GCC CAGG-GCTGGCCG        GGCGGAGCCGGGCCG  55 294
CXD92_RS12000 NONE
        sdhC NONE
        sdhD NONE
CXD92_RS11985 NONE
CXD92_RS11980 2462845 .. 2462855 -  -6.8  -3.01906   CCAATAAACACTAGA                 CCGT ACG ACGG                 ACCATCAGTTCCTTG  51 10
CXD92_RS11975 NONE
CXD92_RS11970 2461181 .. 2461194 -  -9.5   -5.4505   GCCGGCAAGAAAAAA               CCGCC CGAA GGCGG                TTCTTTCAGTGGACG 100 54
CXD92_RS11940 NONE
CXD92_RS11935 NONE
CXD92_RS11930 NONE
CXD92_RS11925 NONE
        potA NONE
CXD92_RS11915 NONE
CXD92_RS11910 NONE
CXD92_RS11905 NONE
CXD92_RS11900 2446787 .. 2446805 -  -5.2  -4.36914   TGCTGGCCGAGAAAA             TCACCGAC GCG GCCGGCAA             CATGGCGCCGACGGT  69 331
        rmuC 2444852 .. 2444891 -  -5.5  -3.90744   TTGGCGGCGAAAGAA  TTGGGCGGACCGCCCGCC CCGCC GG-GGGCTCTCCGCCCCC  GCGCCTGCTCCTCAG  63 37
CXD92_RS11885 2443175 .. 2443189 -    -7  -2.96984   GAAATTTAGCAGATA               CCGGGC CAG GCGCGG               GCCAGAATCGGGGCC  51 1
        rpiA 2442322 .. 2442350 -  -5.2  -4.07885   TAGTGCCCCTGAAAA       CGCGGTTGCGCAG AGGG CTGCCCGACC-CG        CAAGGTTATGACCCG  64 106
        phoU 2441301 .. 2441356 -  -8.1  -3.05596   CAGGCGCGGATTGAA TCGGCCTA-TGGCGAGGCGCCCG-CGC TGCT GCGGCTGGCGCCGGGCGAGCAGGCCGC CTGGCCATATGAACC  52 166
        hrpA 2433734 .. 2433774 - -17.6  -3.57263   ACTGGCACCCGCAAA CTCTCGGGGTGCCTGTCCC CGCA GGGACAGGCA-CCCGTGGG  ACAGCCCCCTACCGC  90 34
CXD92_RS11845 NONE
CXD92_RS11840 NONE
CXD92_RS11835 NONE
CXD92_RS11830 NONE
CXD92_RS11825 2425062 .. 2425093 - -13.6  -3.04144   TGTTCATCTGGAACA      GTCCCGCCGCGCCG GCCC CGGCACGGCGCGAA       TACGACGCGCCCTAT  69 250
CXD92_RS11815 2422629 .. 2422646 -    -4  -3.76641   AGCGCAATACGCAAA             CGTCGC TTATCC GCGGCG              GCGCCTGTCTTCATA  57 14
CXD92_RS11810 2421065 .. 2421093 -  -2.3  -3.27743   CATCATCAAGGAATA       CGC-CGGCCTGT TCGTCT ACTGGCTGCGCG        GCTGGGTGTAACGGC  44 438
        msbA 2417336 .. 2417352 -  -6.5  -3.53012   TGGCCGCCGCCGAAA              CCATGGC GCC GCAATGG              GCGCAACAGGTGTTG  55 148
CXD92_RS11780 NONE
CXD92_RS11775 2414069 .. 2414082 -  -3.7  -4.74103   GGCCGAACTGAAAAA               GGCGC TCTC GCGCG                ACCGCACGCGCATGA  77 418
CXD92_RS11755 NONE
CXD92_RS11750 NONE
CXD92_RS11745 2409295 .. 2409333 -  -5.3  -4.07568   GCTGTCGGGCCAAAA   CCCAACGCTTAACACTG ACTCG CAGCACTAAGCGTTGCT   CTCTCGCCTTCTGGT  64 72
CXD92_RS11740 2406060 .. 2406070 -  -6.8  -3.65314   TTGAATTTGGAAGAA                 GCAC AGC GTGC                 GCCTGGCAGTCGGTT  61 127
         rrf 2405851 .. 2405885 - -19.5  -4.59773   GCGTACCCCCAAAAA    CAAAACCCCGCGAGCC GTGA GGCT-GCGGGGTTTTG     AGCAATAAAAGCCTG 100 36
CXD92_RS11730 2402697 .. 2402750 -  -6.6  -3.76224   TGCCCATCTACGAAA CCGCCGCCCTGCTGCGCAGCGC-CGGC ATC GCCGTACCCTGAGC-G-ACGCCGGCGG CGCGCGGTCACCAGC  62 33
CXD92_RS11690 2395815 .. 2395847 -  -4.6   -4.1899   CCAGTGTATGCAAAA      CGCGGCGGCCGTCA CAATC TGCCGCCTGCCGCT      CAGCGTCGCCGCGAC  66 25
CXD92_RS11685 2394327 .. 2394349 -    -9  -3.03441   CATCACCGCCGAACA           GGTGCGCGAC ATG GTCGCGCGCT           TTGCCCGCACCCTGG  55 107
CXD92_RS11675 2391528 .. 2391586 - -15.8   -3.6106   TGGAATATGTCGAAA GCGGCCGGCGCGAAGGCGCGCGGCTGC GCATGG GCGG-CGAGCGCGTGCGCGCCGACAGC GGCGGCTACTACATA  85 396
CXD92_RS11640 2384039 .. 2384068 - -18.5  -3.09492   TCGCCAACGGCAAGA       CGCGCGCCCAGGC CGAA GCCCGCGCGCGCG        AACTGCTGACCCTGG  85 432
CXD92_RS11615 2377304 .. 2377352 -    -8  -3.67296   CATTATCGATCCAAA CGGCGCGCGCGGCCAAGCGCGGGC CCA GCCGGCG-TCAGGCGC-CGCTCCA GGCCTCGGCGTTCAG  63 11
CXD92_RS11610 2376104 .. 2376142 -  -8.7  -3.03159   CCAAGTCCGCCAAGA  GCGCGGGCGGCGGCGCGGC CGA GGCG-GCGGCCGGC-GCGC  ACTGAGCGCCAGGCC  55 49
CXD92_RS11580 NONE
CXD92_RS11575 2368283 .. 2368302 - -16.4  -4.18018   GTCCGCCAGCGAAAA            CGCGCCCC GCAA GGGGCGCG             TTTTGCATGAGCCAA 100 54
CXD92_RS11560 2364999 .. 2365013 -    -7  -3.01924   GACGCTGGCCGAACA               GGGCGG CGC CGGCCC               GCACCTGATTACCGC  52 478
CXD92_RS11545 NONE
CXD92_RS11540 NONE
CXD92_RS11535 NONE
CXD92_RS11530 2359048 .. 2359079 -   -10  -4.07568   CTGCTTCCGGGAAAA      TGGGCGGGCCGCCGC CGT GCGG-AGCCCGCCGC      CGATGCGGGATTACT  78 36
CXD92_RS11520 2357394 .. 2357438 - -15.6  -3.17075   CGCCGGGCAAGGCAA GGCGGCC-GAGCTGCTGGCGC AGGC GCGCCAGCTGGCCTGGACGCC GCTGGTCGACGCCGA  77 197
CXD92_RS11505 2354233 .. 2354254 - -15.1  -3.01712   CGCGCTGGTCGAACA           GGCCGCGGC GGCG GCCACGGCC            ATGGAAGAACAGGCC  74 197
        greA 2351425 .. 2351445 -  -9.6  -3.07104   CGACAACGATACAGA            CGCCCGGC GCACG GCCCGGCG            TTCAGGAATTCGGAT  57 238
CXD92_RS11485 2349392 .. 2349429 -  -7.5  -3.16742   CTGAACGCTCACGAA   CGCGACCTGCGCAGCCGC CTG GAGGC-GCTCAGCGCGCG   CGGAGACGGCGCGGT  53 203
CXD92_RS11440 NONE
CXD92_RS11435 NONE
CXD92_RS11430 2341726 .. 2341739 -  -3.1  -3.17444   GGAGAAACAGACATA               TCGAA CCTC CTCGA                ATTGAAATCTTGACG  44 58
CXD92_RS11425 NONE
CXD92_RS11420 NONE
CXD92_RS11415 NONE
CXD92_RS11410 NONE
CXD92_RS11405 NONE
CXD92_RS11400 NONE
CXD92_RS11395 NONE
CXD92_RS11390 NONE
CXD92_RS11385 NONE
CXD92_RS11380 NONE
CXD92_RS11375 NONE
CXD92_RS11370 NONE
CXD92_RS11365 NONE
CXD92_RS11360 NONE
CXD92_RS11355 NONE
CXD92_RS11350 NONE
CXD92_RS11345 NONE
CXD92_RS11340 2327556 .. 2327578 - -14.2  -2.70932   GCGCTGCGCGAACGA           GGCTACGACA GCG TGCCGTAGCC           CCCCTGCCCGGGCCA  69 44
CXD92_RS11325 2325361 .. 2325375 -  -5.6  -3.59262   GCCGAGATCGCGAAA               CGGCCT TGC AGGCAG               GCGATGCAGCAGGTC  54 514
CXD92_RS11305 2318417 .. 2318433 -  -5.1  -2.78463   ACCTTGCGCAGCACA              TTGTGCG CGA CGCAGAA              CCTGCCTGCCGGCGC  43 398
CXD92_RS11290 2316492 .. 2316542 -  -5.5   -3.7108   AGCTGGACACCGAAA TCTACG-ATCG-TGAGCTGGCCG GCTGGAT CGGGCAGCGCATCGACGCGCAGA TCCGCCACGCGCGGC  58 123
CXD92_RS11280 2314908 .. 2314930 -  -4.1   -5.4505   CCGCCCAAGAAAAAA          GCACCC-GGC TTGC GCCTAAGTGC           CTGTTTTCAAACGAA  90 47
CXD92_RS11270 2311740 .. 2311780 -   -11  -3.53012   GGGTCCCGGGCCAAA  GCGCGCAGATCCCGGCCG TTACC CGGCAAAAGCCTGCGCGC  AGGCCGCGCGCCCGT  70 65
CXD92_RS11265 2311089 .. 2311123 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS11235 NONE
        ectA 2302671 .. 2302681 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS11225 2301631 .. 2301653 -  -6.2  -2.78463   AGCGTGTGCATCATA           CGGCGCCA TTGTACG TGGCGGCG           CGCCGGATGCCCCCT  47 39
CXD92_RS11220 2301018 .. 2301063 - -11.7  -3.04144   CGGCGAGGGCGAACA GGCCTGAGGCCGCGCGGGCCTG GCT CAGGCCTGCACGTCC-CAGTCG CCGCGCCCGCGGGTG  65 4
        tsaD 2296617 .. 2296635 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACTGGTG 100 204
CXD92_RS11185 NONE
CXD92_RS11180 NONE
CXD92_RS11175 NONE
CXD92_RS11170 NONE
CXD92_RS11165 2290704 .. 2290731 - -15.5  -3.75153   GCGCGCCAACGCAAA        CGTCCCGGGGC GTTGCA GCCCCGGGGCG         TCATTCCTGCGGATC  85 49
CXD92_RS11160 2289658 .. 2289711 - -14.8  -3.55444   GGGCCATGCCGGAAA CGGCTGTCCGAGCGGACGCCCCGTCC CCCACC GGACGGGACGTCC-C-CGG-CAG-CG CCTCAGAAGGTCCGC  81 28
        rlmD 2288156 .. 2288187 -   -18  -3.25169   CGAAGAACTGAGCAA      CACCGGGCGGCG CTGAACGC CGCCGCCCGGCG       GGCCGCCTCAGGCAG  89 33
CXD92_RS11145 2287321 .. 2287374 -  -4.3  -3.52877   ATGAAGAGATGATAA TTGTTAGCTATCAATTAATAAAATTT AAT AAATCTAATTAATTGATAG-TCTCAA GCAATCGATCGCTAA  52 48
CXD92_RS11140 2286500 .. 2286523 -   -21  -4.32201   CGAAGGAAGGGAAAA          GCCGGCGGCG GCAG CGCCGCCGGC           CAGGCATCAGGCCAG 100 32
CXD92_RS11135 2284816 .. 2284836 -  -8.1  -3.53811   CTGACCGTGCGCAAA            CCCGCCGCC GAC GGCTTCGGG            CTGCACGGCAGCGGC  60 170
CXD92_RS11120 2281017 .. 2281063 - -20.3  -4.87626   GCCGAACAGGAAAAA GCCCGGCTGGTGCCG-TTCCTC ATGG AAGGAATCGCCACCAACCGGGC CATGTTCCAGGCCGA 100 116
CXD92_RS11110 2279783 .. 2279793 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS11100 2278495 .. 2278536 -  -7.9  -3.89354   GGTCGAAACGAACAA TGGCGTGGTGACGCTGACCG GCA CGGTCGGCACCGCCAC-CGA GGCGGATCAAGCAGC  67 268
CXD92_RS11065 2269283 .. 2269318 -   -19  -3.14132   CTGTCCCCGCAGGAA    TCCTGGTGCCTGTCCC CGCT GGGACAGGCACCCGGG     CACTCGGGCACCCGG  90 50
CXD92_RS11055 2267214 .. 2267235 -  -2.1  -2.87132   GGCCGCCCGCAGACA           TGCCCGCGC CGTT ACGCCTGCA            ACAAGGCCCGCAGTT  40 15
CXD92_RS11050 2265916 .. 2265944 - -10.1  -2.77994   CAGAAATTGCAACCA        TTTCCGCGCCGCC CTC GGCGGCGCGCCGA        ACCCGGCCGGCGCTA  57 38
CXD92_RS11045 NONE
CXD92_RS11040 NONE
CXD92_RS11035 2263847 .. 2263862 -  -6.2  -4.83722   AACAGCAGAATAAAA              TTGCAT AACC ATGCAA               CTTGATGCCATAGAC  86 490
CXD92_RS11025 2262424 .. 2262439 -  -8.2   -3.4247   AGAAGCTGAAGAAGA              CCACCG AAGG CGGCGG               CGCGCCGGCGCTGGA  61 343
CXD92_RS11000 2255018 .. 2255028 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS10995 2253597 .. 2253607 -  -2.4  -4.06419   TTTTGCTACAAAGAA                 CCGG CTA CCTG                 TATGCTGACACCCTG  58 432
CXD92_RS10985 NONE
CXD92_RS10980 2249828 .. 2249882 - -15.8  -2.61383   ACCGCTATTGAGAAT GGCCC-TGC--CGCGTCTTGCGCCAGC CGAT GCGGGCGCAAGACGCGAAGCTCAGGCC GTGATGATGTCCAGC  74 19
CXD92_RS10945 2240429 .. 2240448 -  -7.1  -3.42354   CAGGTCAAGGCAGAA            CTGGCCC AGGCCA AGGCCAG             CGGCCAATACACCTT  58 291
CXD92_RS10935 2238485 .. 2238506 - -14.4   -2.6155   CCTGGGAAGACCAAC           GGGCCGCC ATTATA GGCGGCCC            CGCGGCGCGGCCCGG  69 45
CXD92_RS10930 2238148 .. 2238174 -  -7.9  -5.06816   ATTGTCCAAGAAAAA        GCCG-GCGCGCC CGAT GGCGCGCTCAGT         GCGTCAGATGGCGCC  88 21
CXD92_RS10925 2237576 .. 2237587 -  -2.2  -4.05004   GCAGTAGAACAATAA                CGCGG ACG CCG-G                AGAAGGCACGGCACT  58 246
CXD92_RS10920 2237260 .. 2237275 - -11.8  -4.93547   CCAAGCAATGAAAAA              GCCCCC TGGC GGGGGC               TTTTATGGACGCGCT 100 48
CXD92_RS10915 2236402 .. 2236412 -  -3.2  -3.77808   GCGACCAGAACACAA                 GACA CCG CGTC                 GCTTGAAGATCTCGC  56 261
CXD92_RS10910 2236010 .. 2236035 - -16.9  -5.06414   GGCGCGCAACAAAAA         GCCCCACTGCC GCGA GGCAATGGGGC          TTTTTTCATGCGGCC 100 92
CXD92_RS10900 NONE
CXD92_RS10895 2233188 .. 2233214 - -14.4  -3.01924   TATCTCTGGTGAAGA         CGCGCCAGCC GGATGAG GGCCGGCGCG         ATCAACGCTTATCGA  72 78
        clpX 2231803 .. 2231837 - -19.6  -3.05819   CAGATAGCGGGAAGA     TGCAAAAAAACCCGTT ACA AACGGGTTTTCTTGCA     ATGGCGGCCGGGATC 100 46
CXD92_RS10885 2229158 .. 2229182 - -22.9  -5.45726   GATAGCCGAAAAAAA          CCGGGCCCGGA TGA TCCGGGCCCGG          TTTTGCGGGTCGCTG 100 59
CXD92_RS10875 2226662 .. 2226678 -  -7.2  -4.21827   TGAAACACGGGAAAA              CCGCCG GATCG CGGCGA              TGGCGCGCGGGCTCA  72 38
CXD92_RS10870 2225658 .. 2225678 -  -2.4  -3.16564   TTTTCATGGCATCAA            TCCGCCCG TACGC CGAGCGAC            TTGGCCAACGGCACC  42 1
CXD92_RS10865 2225197 .. 2225210 -  -2.3   -2.6563   GCGCTCAATAACGCA               GTTGC ATCA GCCAC                TCGGCCACCATCGCC  38 1
CXD92_RS10860 NONE
CXD92_RS10855 NONE
CXD92_RS10850 NONE
CXD92_RS10845 2221862 .. 2221889 - -11.3   -3.1876   AAGCCCATCCACGAA       CGCGCGC-GCCGG TCGG CCGGCAGCG-GCG        GCAATTCGGCCTTGA  64 125
CXD92_RS10830 NONE
CXD92_RS10825 NONE
CXD92_RS10820 NONE
CXD92_RS10815 2217440 .. 2217456 - -13.7  -3.65812   GGTGGGGCAATACAA              CGTGGCC GCC GGCCACG              CCGCGCTGAAGGCTC  80 47
CXD92_RS10805 2215561 .. 2215590 -    -2  -3.64703   TGCGGGGCATGTAAA       TCCCA-GCGCCGG GGTTG CCGGCGGGCGGCA       GCGGCTGCGCGTGCG  51 392
        uvrB 2210268 .. 2210282 -  -3.5  -2.70932   GCCTGTTTGTAACGA               GCGAA TTTTC TCCGC               TAATTTCCGTCTTTC  41 47
CXD92_RS10780 2209474 .. 2209489 - -11.8  -5.00616   CTCGGTCGGAAAAAA              CCGCGC AGTC GCGCGG               TTTTCTCATTTTGGG 100 96
        iscR NONE
CXD92_RS10770 NONE
        iscU NONE
        iscA NONE
        hscB 2206239 .. 2206259 -  -2.4  -3.32844   CGCGGCACCGCACAA            GCGGGTCA TCGGT TGCCGCGC            ATCGGGCCGGCCGCC  44 81
        hscA NONE
         fdx NONE
        iscX 2203721 .. 2203755 - -24.4  -3.53012   CGCGCGGCCCCGAAA     CGACAAGGGCCCCGTC CAT GACGGGGCCCTTGTCC     GGGCGGCGCGCCGGC 100 48
CXD92_RS10735 2202560 .. 2202594 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS10720 2199668 .. 2199687 - -12.1  -5.60993   CGGGCCATAAAAAAA            CCCCGCG GGGGTT CGCGGGG             CTCAAGCCAAACGCA 100 66
CXD92_RS10710 2196875 .. 2196898 -  -9.4  -3.15249   GATACCGTCGATCAA          GCCGTCGCGC GCCA GCGCGCAGGC           CGTGGTGACGTAGCG  59 364
CXD92_RS10700 2195225 .. 2195249 -  -7.2   -3.4072   GACCTGGCAGGAGAA          GGCGTCAA GAATAGCAG TTGACGCC          GGCCGGCACGAAATG  56 54
CXD92_RS10695 2194340 .. 2194353 -  -2.3  -2.70354   GGGGCTAGAAATCCA               GTTCG ATCT CGACC                GCGTCGCCCACGCGC  38 1
CXD92_RS10690 2193794 .. 2193821 - -10.5  -2.55253   ACGAATCGGAAGTGA        CCGCG-GCGCCC TTGCC GGGCGCGCGCGC        AACGGCCGTCAGGCC  57 34
CXD92_RS10685 2192660 .. 2192702 -  -7.7  -5.59357   ATGACATTAAAAAAA GGGCGGTATCCATTTGCACGC GCC GCGTGTGA--GGATGCCGCCC CGGGTTCCCGCGCCG 100 49
CXD92_RS10680 NONE
CXD92_RS10675 2189892 .. 2189910 - -17.4  -5.78622   GTACGCCAAAAAAAA             CCCGGGCC AGC GGCCCGGG             TCTGTTGCGTCGCCT 100 47
CXD92_RS10660 NONE
CXD92_RS10655 2186988 .. 2187000 -  -6.2  -3.30124   GTTGAGTTGTTATAA                GCGG ACTGA CCGC                TTTCAGCCGGGCGAA  53 28
CXD92_RS10650 2185334 .. 2185391 -  -3.1   -4.2679   GAATTTGCACGAAAA CGATCTCCTACGT-GCTGCGCGGCGCCA TGG CGGCGCCGCGCGGCGACTCAGTTCTTGG ATATTCCCCAGAATA  63 15
CXD92_RS10645 NONE
CXD92_RS10640 NONE
CXD92_RS10635 NONE
CXD92_RS10630 2180522 .. 2180540 - -17.4    -5.252   CATGGCCATAAAAAA             GGCCGGCC AGC GGCCGGCC             CGCAGCGCGTCGCGC 100 42
CXD92_RS10620 NONE
CXD92_RS10615 2176775 .. 2176795 -  -3.2  -2.62616   TCAGGGCCGATACCA           GCGCTGGCA GGAA TGCCC-CGC            TAGGAACGGGAAGTC  39 25
CXD92_RS10610 2175934 .. 2175950 -  -7.9  -3.63991   CACCATGTCGAAGAA              CAGCGCC TGC AGCGCCG              TGCGCCGTTGCGCGG  63 398
CXD92_RS10600 2173461 .. 2173486 -    -6  -4.15044   TCCTGCGTGAAGAAA         CGCCTGCCGA GGCTTA TTGGCTGGCG          TAGAAACTGACCAAT  66 13
CXD92_RS10595 NONE
CXD92_RS10590 2171985 .. 2172016 -  -8.7  -2.94218   ATTTTTGATTATAGA     GGGTCGGCAG-GCCG ATGC CAGCGCCGCCG-CCC      TACTCCTTGCCCGGA  54 25
        alaS NONE
CXD92_RS10580 2169036 .. 2169063 - -21.4  -3.01791   ACGCTCGCGCCAAGA        CAAACGGCCCGC TTGC GCGGGCCGTTTG         CTTGCCGGCAGGCGC 100 41
CXD92_RS10570 2167735 .. 2167753 - -10.2  -4.55295   TTGCGGACAAAGAAA             GCGCTGGC ATA GGCAGCGC             TTTCAAGAAATGCAG  89 139
        rimM NONE
        trmD 2165918 .. 2165930 -  -9.1  -4.08216   CGAGTCGGCCGAAAA                CAGCG TGG CGCTG                CGCTGCGGACTGGCC  72 400
CXD92_RS10520 2159473 .. 2159499 -   -15  -3.17075   GGCGTCTGAACGCAA         GGGCCCCCCGGC GCG GCCGGGGGTTCC         TGCCCATGGCAAGCG  76 85
CXD92_RS10510 NONE
        rlmN NONE
CXD92_RS10500 NONE
CXD92_RS10495 NONE
CXD92_RS10490 NONE
CXD92_RS10485 NONE
        bamB NONE
         der NONE
CXD92_RS10470 2147144 .. 2147158 -  -9.2  -2.52464   GTTTGTTTTAAGTGA               CGGCAC AGT GCGCCG               AAATCAGTACTCTAC  54 118
CXD92_RS10465 2146819 .. 2146848 - -17.2  -4.36595   GAGCCAAAGCGAAAA       TGCCCGCCGGCGC TGGCC GCGC-GGCGGGCA       ATCAAGGGTAATGCT 100 53
        hflX NONE
        hflK NONE
        hflC 2143368 .. 2143397 - -19.3  -4.98531   TGCCCAAACGAAAAA       CGGCTGAGAGGGC GTAA GCCCGCTCAGCCG        TATGCGGAATGTTTT 100 122
CXD92_RS10445 2142092 .. 2142102 -  -6.8  -2.55896   TTTACGAATCAATAT                 CGAG TTT CTCG                 GGAAATCCGGAAATC  47 76
CXD92_RS10440 2140743 .. 2140776 - -18.1   -3.9461   CCTGGCGAATAATAA     CCG-AGGCCGCGCCAC AAC GGGGCGCGGCCCGCGG     CGCCCTACCCCTTGA 100 30
CXD92_RS10435 2139948 .. 2139958 -  -3.2  -3.23452   ATGGCGACAAGCTAA                 GACA ACT TGCC                 GCATCAGTAGCACAG  46 195
CXD92_RS10430 2139604 .. 2139633 -  -6.5  -3.16055   CAAATCCTGGATGAA       TGATTCTGGAATC AATA GATTCGGGAATCA        GGCATCAATACAGGC  51 30
CXD92_RS10425 2137328 .. 2137353 -  -6.1  -4.24002   CCGCAAACCGCAAAA         GGCCATGCGCCG GCC CGGCACATG-CA         TGCCGCCACCCGCCA  70 260
        rpoD NONE
CXD92_RS10410 2134496 .. 2134521 - -16.9  -5.14626   ACCACCAAAACAAAA         CGGGCCTCGGA TTGC TCCGAGACCCG          CATGTTTACTTGGTA 100 36
CXD92_RS10400 2132728 .. 2132744 -  -5.1  -3.78034   CATCGACATCAAGAA              GCTGG GACGTAT CCAGC              GCCCTGGCCACCGGG  58 494
CXD92_RS10380 2129949 .. 2129990 -  -6.3  -3.02511   GCTACCGCCTCAAGA CCTGAACGGCGCGCGCCGGC TCA GCCGGCCGGCGAC-TGCTGG CGCACCCACTGCATG  49 4
CXD92_RS10310 2119050 .. 2119062 -  -3.3  -2.52516   TTGCCGAGGACGAAT                TGCAG GCG CTGCT                GGAGGCGGTGCGGCA  39 62
        bioF NONE
CXD92_RS10295 NONE
        bioD NONE
CXD92_RS10285 2113670 .. 2113680 -  -8.2  -3.53444   CCAGGGTTTCGGAAA                 GGCC CAT GGCC                 ACGGGCGCGGTGACC  62 446
CXD92_RS10270 2112160 .. 2112199 -  -9.4   -3.5361   GAACCATGCATACAA  CCTATTGAATCTTCACAG CTAG CTGTGAACTGTCAATAGG   TTGTATTCGTCCAGG  64 4
CXD92_RS10255 2107498 .. 2107512 -  -5.6  -3.78934   CCCGGGTTAGAAGAA               GCCCAG GGC CTTGGC               GCTGTAGCTCACCAG  60 2
CXD92_RS10240 2104242 .. 2104252 -  -8.2  -3.33162   CAGCGTATTCGAGAA                 CGGC AAT GCCG                 ACGCCACGTTGACCA  59 280
CXD92_RS10230 2102244 .. 2102260 -  -9.3  -2.75481   TGCCAATTCCAACCA              GGGGGCC GCG GGGCCCC              TGCCACCCAGGAGCA  55 392
CXD92_RS10220 2100895 .. 2100921 - -13.6   -3.7795   CCAAAGCCCAGCAAA         TGGCCGCCGGCG CGG CGCTCGCGGCCA         AGCGCGGCGAATCCA  82 280
CXD92_RS10210 2099882 .. 2099909 - -17.8  -3.02144   TTACCGTCGCCAACA        TCGCGGT-GGCGC TGC GCGCCTACCGCGA        AACCACGCTGCGCGA  82 361
CXD92_RS10200 NONE
CXD92_RS10195 2098170 .. 2098183 -  -4.5  -3.02144   GCAGGCGCTCGAAGA               GGTCA TCAC CGACC                TGCAGCGCCGCGGCG  46 208
CXD92_RS10175 2093805 .. 2093815 -  -3.2  -2.78816   CCAGCCCCTACGACA                 GCAC GGT GTAC                 GACCCGCCCAGCTAC  40 329
CXD92_RS10145 2088821 .. 2088836 -  -3.2  -2.52516   GCGTCGACCAGCAAG              GCCG GGCGATGG CGGC               GATCAATATCCGCTG  39 120
CXD92_RS10125 NONE
CXD92_RS10120 2084889 .. 2084917 - -10.2  -3.52073   GCTGCAATACCAGAA        GCAGCTGCGCCT GCACG AGGCGCACCGGC        TGATGGTGGCCGAAA  65 177
CXD92_RS10090 2078756 .. 2078780 -  -2.7  -4.07568   GGCGCCGGCGCAAAA          CAGTGTTGCAG CCG CCGCAATGCCG          TGCCCGCTGGTACGG  59 49
CXD92_RS10085 2077459 .. 2077505 -  -9.6  -3.68222   CGCCAATTCGAACAA GTCGCACGCGCGCCAGGTCG-ACG TGG CGCGCGACCTGGC-C-CG-GCAAC TGGCCGGCGGCGACC  68 224
CXD92_RS10070 2074566 .. 2074607 - -14.3  -3.19513   AGAACGGCAACCTAA CCCCCGGGTGCCTGTCCCC ACAG GGGGACTGGCACCCGCCAA  TTGCTTGCCTGTCCC  73 126
CXD92_RS10060 2072697 .. 2072707 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS10050 2070256 .. 2070284 -  -8.1  -4.10552   TTCCACTAAAGCAAA        TCCGACATGGC ACAGGCG GCCAAGCCGGA        CAACGGCACGCCGGC  69 395
CXD92_RS10040 NONE
CXD92_RS10035 NONE
CXD92_RS10030 NONE
CXD92_RS10025 2066411 .. 2066438 -   -14  -3.02144   GCAGGCCGCCGAACA        CGCCCGTCGGCC GCCA GGCCGCCGCGCG         CGCCAGCGCCGCGTC  72 225
CXD92_RS10015 2064261 .. 2064288 - -10.6   -4.2535   ACACCAGACGGAAAA        GCCTTGGA-CACG CCA CGTGGTCCAGGGC        TTTTTTGTTTCCGGC  89 104
CXD92_RS09980 2058954 .. 2058988 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS09945 NONE
CXD92_RS09940 2049609 .. 2049658 -  -5.6  -3.29144   GGATGGTGTTGATAA TTGTGCGCGGCCC--CCGCGGGCCG GCG CGGCCCGGTGTCAAGCCGCGC-CGA GTATTGTGATCGAAC  51 12
CXD92_RS09935 NONE
CXD92_RS09930 2047288 .. 2047304 -  -3.6  -3.14344   GAGGTGCTGCACGAA              TGGGGC CTGGC GCCCGA              GCGCGTGGCCGGCGC  45 102
CXD92_RS09895 NONE
CXD92_RS09890 2039997 .. 2040009 -  -3.3  -3.65046   GCCGGAGGGGAAGAA                CAGCG GGG CGATG                GCGATCAGCGCGGCC  53 82
CXD92_RS09880 2037939 .. 2037993 - -12.1  -3.01712   GGCTGGCGGGCAACA GCCACGTGTCGGCCGCGGCCTTGATGG GCG CCACCACGGCGGCGGCC-ATGC-TGGC CGGCGGCCCGGCTTT  66 277
        queF 2034792 .. 2034818 -  -7.9  -2.52464   TGCTGGCGCAATGGA         TCGCGATGCAG GCGCG CCGCACCGCGC         TGAACGCGGCTATTG  49 35
CXD92_RS09800 2018665 .. 2018704 - -11.3  -3.28712   CCTGGGGCTGGAGAA  CCGCCTGGCCGACCGCA TCGGCC TGCTGTCGGGCGGGCAG   CGCCAGGCGGTCAGC  66 387
CXD92_RS09710 1999628 .. 1999647 -  -3.4  -2.82595   TTGAACCACCGAAAC            GCGTGCGG CAAG CCGTAAGC             CACCTCAGGACCTGT  41 175
CXD92_RS09705 NONE
        rpmG 1998897 .. 1998918 - -18.7  -4.86731   CCTTGCCAAATAAAA           CGGCCCCGC CCTG GCGGGGCCG            TTCACCATGGCGCGC 100 68
CXD92_RS09675 1994021 .. 1994051 - -22.6  -3.85698   TCGCCGCCGCATAAA       CGAAGAGCCCGCCG GTG CGGCGGGCTCTGCG       GTTTGACCTGAGACG 100 49
CXD92_RS09670 NONE
CXD92_RS09665 1992181 .. 1992221 -  -2.4  -5.00884   ACTCGTGCGAAAAAA TAGGTAACGGACCGCGCCC GGCA GGGCGCGGGCGGTCAAA-A  CCATCGATTATAGGA  79 45
CXD92_RS09660 NONE
CXD92_RS09655 NONE
CXD92_RS09650 NONE
CXD92_RS09645 NONE
CXD92_RS09640 1985911 .. 1985921 -  -2.4  -3.01712   GCGTTTCCGGGAAGA                 CCTG TGC CTGG                 CGGCGGGCGCCGATA  41 104
CXD92_RS09630 NONE
CXD92_RS09625 NONE
CXD92_RS09620 1982323 .. 1982347 - -13.6  -4.09685   TTTTATTGCTCAAAA         CCCCGC-AGCC TCAC GGCTCGCGGGG          TTTTGTTTTTGGGGG  85 355
CXD92_RS09585 1974542 .. 1974560 -  -8.1  -3.20348   GCGAGTAATAGGCAA             GCGCTGC GAACA GCAGCAC             CCAGATGGCGAAGGT  54 285
CXD92_RS09570 NONE
CXD92_RS09565 NONE
CXD92_RS09560 1969297 .. 1969311 -   -10  -3.33696   GGCTTTTCCAAGCAA               TTCGCC AGC GGCGAA               ACCAGCGGCTACGCC  63 336
CXD92_RS09535 1965969 .. 1965989 -  -4.7  -3.62046   CCATTCGCCCAAGAA           CCTGGCCA TGGCGC TGGCC-GG            CGAGGCCGGCGAGCT  54 285
        acnB 1962400 .. 1962419 - -16.4  -4.91852   CGCAGCAAAAAGAAA            GGCCCGCC TTGC GGCGGGCC             TTTGTCATGGCCGAA 100 48
CXD92_RS09515 NONE
CXD92_RS09510 1961130 .. 1961140 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 43
CXD92_RS09505 1959992 .. 1960004 -  -4.8  -4.07568   GGGGGCGCCTGAAAA                CTGG GACTA CCAG                GCTGGCAGCCTGACC  63 147
CXD92_RS09485 1955966 .. 1955986 -  -3.8  -4.09864   ATCGATGCGTCAAAA            GTTCCCGC GCGAG GCGGGCGC            CGGGCCGACGTGCTC  61 108
        acnA 1953069 .. 1953092 - -19.6  -5.26875   CGTCCAACGAAAAAA          CCCTCCGGCC AGCA GGCCGGAGGG           TTCGGGTCGCGCAGG 100 59
CXD92_RS09470 1950843 .. 1950863 -    -4  -3.79687   ACGCGGCAGAAAATA           TCGGCG-CGC ATG GCGGCGC-GA           TCCGGTCAGTGGAAC  57 31
        earP 1949690 .. 1949706 -  -2.2  -2.64274   AGGCTGTCAAAGTGA              GGCC TTGAGCACC GGCC              GATCCGGGCAAAGCA  38 60
         efp 1948991 .. 1949010 - -16.4  -5.75342   CCGGGGCAAAAAAAA            CGGGCCGC GCAT GCGGCCCG             TTTCGGTTGCGCCTG 100 56
CXD92_RS09355 1928829 .. 1928841 -  -5.5   -3.2614   GATGCCCCATACCAA                GCACA AAC CGTGC                CAGCTTTTTTCAAGA  51 256
CXD92_RS09335 1925596 .. 1925649 -  -8.8  -2.82623   CGGGGCGGAGAACGA GTAGGCGGGGATGCGGTGCCTGTCCC CGTG GGGACAGGCACCG--TGCCAACCGTC AATCGTTGACGAAGT  54 24
CXD92_RS09295 1914329 .. 1914371 - -10.5  -3.40403   GGGGCTGGACGACAA GCAGGTGATGCAGGCCGCCC ATGC GCGCGGCGTGC-TCACGCGC GCTGTCGCGCTACTA  65 171
CXD92_RS09285 1911558 .. 1911601 -   -34  -3.06815   ATCCTCCTCAATACA GACGCGGGATGGTGGCGCCC ATGG GGGCGCCCCCATCCCGCGTC GAACGATCCAAACAA 100 41
CXD92_RS09280 1910023 .. 1910046 -   -21  -5.47399   GCAAGGCGAAAAAAA          GGCCGGCGCC CGAA GGCGCCGGCC           TTGCTTGCCCGCGGG 100 47
CXD92_RS09275 1908927 .. 1908957 -  -5.4  -2.71712   TGCTCGCCCTGAAAG      TCAGCCGGC-CCT GCGACG AGGTGCTGGCCGA       GGTCGTGCCCTAGGG  45 107
        pgaA NONE
        pgaB NONE
        pgaC NONE
CXD92_RS09205 1892575 .. 1892589 -  -5.6   -4.1891   CTGGCCGAACAGAAA               CTGTCC AGC GGGCAG               GCCGACCTGGTGGCG  66 180
CXD92_RS09190 NONE
CXD92_RS09185 NONE
CXD92_RS09180 1889782 .. 1889792 -  -2.4  -2.54523   GCAGACTGGAATGCA                 TGGG TTA CCCC                 TGGAGGTGGGTTTTC  38 19
CXD92_RS09175 NONE
CXD92_RS09170 NONE
CXD92_RS09165 NONE
CXD92_RS09160 NONE
CXD92_RS09155 1884153 .. 1884180 - -18.6  -3.11687   GCAAGCAGTACCGAA        GCGGCTTGAGAA GACA TTCTCAAGCCGC         TTTTTTGCGCCTGTC  90 189
CXD92_RS09120 1877207 .. 1877222 -  -3.2  -4.07568   CCGCGCGGTCGAAAA              GGGC GAGTTGCG GCCC               GATACCCCGGTGGAA  60 198
CXD92_RS09065 1868100 .. 1868121 - -14.5  -4.93696   GCCAAAGATCAAAAA           GGCCCTTGA GCAA TCAAGGGCC            TTTTTCTTTTGCGGC 100 209
CXD92_RS09025 NONE
CXD92_RS09020 1859723 .. 1859733 -  -2.4  -3.06796   CGCCAGCTTATTCAA                 GGAC TTC GGCC                 TTTTCGATGATCACG  41 7
CXD92_RS09015 1858742 .. 1858767 - -19.1  -4.55798   TACGCCAAATGAAAA         GAGCCTGTCCC GACG GGGACAGGCTC          TTTTTCCCGGCGCGG 100 204
CXD92_RS08995 1854380 .. 1854409 - -22.3  -2.62616   CGATGGCGTACAGCA       GTGTGCCTGTCCC GGCG GGGACAGGCACAC        TGGCCGCCGGAGTGG 100 87
CXD92_RS08985 1852156 .. 1852172 -  -5.7  -3.09803   CAAGGCCAGCGAATA              CCGCGAC AAC GGCACGG              TGGTCAATGTGCGCG  48 194
CXD92_RS08970 1849112 .. 1849144 -  -8.5  -3.61715   CATCCTGTCGAACAA    CCG-CCGCCATGCGCC GTTC GGC-C-TGGCGGGCGG     CGAGGCCGGGGCGAT  63 184
CXD92_RS08950 NONE
CXD92_RS08945 NONE
CXD92_RS08940 1841611 .. 1841622 -  -7.2  -3.27923   GGTGAACAGCAGCAA                GGCC ACCA GGCC                 GCTGGCCACCAGCGC  54 111
CXD92_RS08930 NONE
CXD92_RS08925 1838344 .. 1838363 -  -2.7  -3.58343   CCGACGAGCCGGAAA            CCGCGGC GAAGAT GGCGCAG             CCGATGACGTTGGTG  49 332
CXD92_RS08885 NONE
CXD92_RS08880 1814349 .. 1814366 -  -3.4  -3.73775   CCTATGGCCAGCAAA             GCCTGCA TAGCC TGC-GGC             GGCTGCACCGGGCCG  55 419
CXD92_RS08830 1807307 .. 1807319 -  -3.3  -3.13371   CAGGCCACTAATATA                CCGAA GCG CCCGG                CGAATAAAAATAGCG  44 76
CXD92_RS08825 1806411 .. 1806426 -  -7.5  -3.39895   GTCGGGAGGAACGAA              GCCGG AAACCG CCGGC               GCAAGCGGGCCCAGG  59 133
CXD92_RS08820 NONE
CXD92_RS08815 NONE
CXD92_RS08810 NONE
CXD92_RS08805 NONE
CXD92_RS08800 NONE
CXD92_RS08795 1799710 .. 1799730 - -10.4  -2.70932   GGGCGGGGTGAATCA           GCGCGGCGC GTTG GCGC-GCGC            CACCATGGCGTCGAG  57 2
CXD92_RS08730 1786827 .. 1786837 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS08725 NONE
CXD92_RS08700 1779361 .. 1779391 -  -5.2  -3.14602   TCTAGTCGACCAAGA       CCGGACGCGCTCCC TAG GGGAGCAGGCGCGC       CTTGACCTGCTGCGA  49 8
CXD92_RS08665 1771430 .. 1771440 -  -8.2  -3.21747   GGATGGGAGGAGTAA                 CGCG CTG CGCG                 GGCGCGTCGCGACGC  58 106
CXD92_RS08660 NONE
CXD92_RS08655 1768845 .. 1768859 -  -2.7  -3.75169   GACGACTCCATGAAA               CGGGG ACCGG CCACG               CGGGGCAGGGATTCT  53 39
CXD92_RS08650 1767957 .. 1767991 - -14.9  -3.63515   GCCCATCGGCAAGAA     GGTGGGCCTGGCCAC CGAAC GCGGCATGGCCCACC     TCGTCATCGACGAGC  83 64
CXD92_RS08575 1754171 .. 1754192 -  -3.6  -3.53012   CCCTGGCCGCCGAAA           CCCGCGAC CAGGGC ATCGCGGC            CAACGCGGTGCTGCC  49 205
CXD92_RS08555 NONE
CXD92_RS08550 1749217 .. 1749235 -  -6.7  -3.21416   CATGGCGACGATCAA            CGACCGCA GCGT TGCGG-CG             TCGGGCGGCGTCTTC  52 168
        arsH 1747977 .. 1747987 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 255
CXD92_RS08530 1746511 .. 1746545 - -17.1  -2.66316   CGTCCTACGACATGA    CGCCGCC-GGCCGCCA AGGA CGGCGGCCAGGAGGCG     CCGTGAGCGACGCCC  80 453
CXD92_RS08510 1743106 .. 1743123 -  -4.8  -3.16742   CTCAAGCCGGAGTAA             GGCCGCC GCTCA GGCG-CC             GGGAAACCGCATGGG  47 17
CXD92_RS08490 1739388 .. 1739399 -  -5.8  -2.62184   TGCCCGCTCAGACGA                TGCG CGTG CGCA                 AGGTGCCGATCTGCG  44 6
CXD92_RS08485 NONE
CXD92_RS08480 1737339 .. 1737349 -  -6.8  -2.94912   CCTTGAAGTTATAGA                 GCAG GTT CTGC                 CTGGATGCGCGGCGC  51 59
CXD92_RS08475 NONE
CXD92_RS08470 1735075 .. 1735086 -  -7.2  -3.14132   CCTGGTGCGCACCAA                CCCG CGCA CGGG                 CCGGCGCTCGCTCTA  53 253
CXD92_RS08460 1733498 .. 1733516 - -10.4  -3.68073   CAGTTCATGGAAGAA             TATACGTC ATT GACGTATA             TTTCAATCGCCAGCA  70 109
CXD92_RS08450 1732941 .. 1732966 - -13.3  -2.79831   GCAACCGCCAGCACA         CCGCCAGCG TGGTGCTG CGCTGGCGG          TTCTGAATCGCAGCT  67 45
CXD92_RS08440 NONE
CXD92_RS08435 NONE
CXD92_RS08425 1724769 .. 1724817 -  -7.3  -2.84192   GACATGAGCAGTACA CCCTTGCGGGCCGGGCGCGCGGCG GCGC CGCCGCGCG-CCGAAGCGC--GGC CGCTGGCCGGACTGT  50 439
CXD92_RS08370 1713159 .. 1713172 -  -9.5   -2.5092   GAATATTTTATGAAT               GCGCG CGGC CGCGC                GGCGCGGCCTGGAAG  54 61
CXD92_RS08365 NONE
CXD92_RS08360 1711116 .. 1711141 -  -9.7  -3.24232   CTCCCTTGAAAGACA         CGCTCCTGCCGA TTC TAGGCAGG-GCG         GCGGGCGGATCGGCC  61 120
CXD92_RS08355 1710264 .. 1710274 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS08350 1709233 .. 1709244 -  -5.8  -3.01712   GGCTCGCGCCGAAGA                TCGC GCCG GCGA                 CCGAGCCGACGCCGC  47 41
CXD92_RS08340 NONE
CXD92_RS08335 1707361 .. 1707371 -  -3.2  -4.09685   TCGTACGGGCCAAAA                 CACC TCC GATG                 ACGCGAGTGCCGCGA  59 252
CXD92_RS08330 1706432 .. 1706453 -  -8.7  -3.30771   CGAGAGCGTGCAGAA           CGCCATCGAC CAG GCCGA-GGCG           GTGGCCGACGATATG  58 328
CXD92_RS08320 1704142 .. 1704160 - -12.4  -3.57144   CGCTGCATTGGGAAA             GCGTCGAC GCG GCCGACGC             CGCGGCGGTGCTGGA  74 344
CXD92_RS08250 NONE
CXD92_RS08245 1684803 .. 1684838 -    -9  -4.70266   AACAGCAGGGAAAAA   GA-GGC-CCCGCGCCG TGCCCG CCGCGCGGGCGCCGTC    GTGCTGGACGGGCTT  86 94
CXD92_RS08240 1682482 .. 1682503 - -15.9  -4.77165   GCGCGCAGAAGAAAA           GCCGGCATC GAGA GATGCCGGC            TTTTTTCTTGCCGGG 100 306
CXD92_RS08220 1679039 .. 1679057 - -10.2  -2.62184   CCTCGCTGGAGACCA             TCCGCCAC ATG GTGGCGGC             CGGGATCGGGGTGAC  55 278
CXD92_RS08185 1670041 .. 1670099 - -12.3  -4.06419   TTCGTGGACAAATAA GGCCGTGCGCCGCCA-GGAAAAGCCGCC TTCG GGCGGTTTTTCTTTGGCCGCGCGCCGGC GCCGTTCATGCGTCG  83 31
CXD92_RS08175 1667784 .. 1667811 - -15.6  -4.59773   TGCTACGGGGAAAAA        TGCAAAGCGGCC GGAT GGCCGCTTTGCC         GACAAACAAGGCAGT 100 107
CXD92_RS08170 NONE
CXD92_RS08165 1665255 .. 1665265 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS08160 1663932 .. 1663943 -  -2.2  -3.21099   CCGCCCGAGCACGAA                GAGCG CGC CGC-C                TACCTGGTCGAGGGG  43 333
CXD92_RS08145 1661124 .. 1661177 - -19.6  -3.01712   CCGGGCGGTCGAACA CCAGCAGGCGGCGGCC-CGGCAGGCCG AAC CGG-CTGCCGCGGCTGCCG-CGGCCGG GACGGCGCCGGCCCC  87 294
CXD92_RS08110 1652251 .. 1652279 - -11.6  -2.65298   GCCACGCAGGAGAAT        GCCGCCATGGCC GAGCA GACCGCGGCGGC        GGCGGCCTCGCTGGA  61 105
CXD92_RS08095 1648080 .. 1648115 - -20.4  -2.84602   GGCACTGCAGTAAAC    CCGCGTGCCTGTCCCC GCAC GGGGACTGGCACGCGC     TGAATCCGGGGTGCC 100 154
CXD92_RS08085 1646054 .. 1646069 -  -6.2  -3.07355   TTGAAACAACAACGA              CTGAAA AGGA TTTCAG               GGGCACCGGTCTATG  49 230
CXD92_RS08080 1645827 .. 1645871 -  -3.6  -3.02471   GCGCCAGCAGATACA GTGGCATGAG-GTCATCGTGCT AGT AGTA-GATGACGCGCACGCCGC CCGTGCCTTCCATGA  44 0
CXD92_RS08075 NONE
CXD92_RS08070 1645194 .. 1645206 -  -9.1  -3.28712   GTGCGTGTCCGACAA                GCCGT TGC ACGGC                GAGCTCAAATTGCCC  59 243
CXD92_RS08060 1642534 .. 1642555 -  -7.9  -3.61398   TGTGCTGTTCAACAA           TGCCGGGCGC GGC GCGCC-GGCC           GTGCCCATCGAGGAG  60 501
CXD92_RS08050 NONE
CXD92_RS08045 1640361 .. 1640371 -  -8.2  -4.09685   CCCGAGGGCGGAAAA                 GCCC CCG GGGC                 CAGCAAGCCCTCGCG  72 45
CXD92_RS08040 NONE
CXD92_RS08035 NONE
CXD92_RS08030 1636765 .. 1636791 - -13.6  -3.14132   TCGGGTGGCCAGCAA         CAGCGCGTGGCC ATC GCCCGCGCGCTG         GCCATCAAGCCCAAG  72 308
CXD92_RS08000 NONE
        bamC 1630723 .. 1630746 - -18.2  -5.78622   CCAGGCCAAAAAAAA          CCGGCAAGCC TTGC GGCTTGCCGG           TTTTTTTGCGCCGCT 100 66
CXD92_RS07975 1625139 .. 1625167 - -20.3  -3.61398   CTGCGTGTGCAACAA        CTGCGCAACGCGC GCC GCGCGCCGCGCAG        GCCGGCATCAGTCGT 100 33
CXD92_RS07965 NONE
CXD92_RS07960 NONE
CXD92_RS07955 1620372 .. 1620386 -  -4.2  -3.14931   GCGATTCGGTATCAA               TCCATG CAG CATGGC               CAAACACTCCAAACG  45 52
CXD92_RS07950 NONE
CXD92_RS07945 NONE
CXD92_RS07940 NONE
CXD92_RS07935 1616672 .. 1616697 -  -8.2  -3.40403   GCCGCTGGACGACAA         GGCGGCCGCCG ATGCG CTGCGGC-GCC         TGCGCGGCCTGGACG  61 483
CXD92_RS07925 1615565 .. 1615596 - -14.6  -3.02829   CAGAGGCGGGTAAGA      TCGAATGGCTGTAT GGGC ATACAGCCATTCGC       GCGCCTGGGGCGCAG  74 50
CXD92_RS07920 NONE
CXD92_RS07915 1613884 .. 1613918 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 264
CXD92_RS07870 1601225 .. 1601257 -   -20  -2.64616   CGGGGACGGAGACGA     CGGTGTGCCTGTCCC AGCG GGGACAGGCAC-CCG      CACGGGCAGGCGCCT  95 77
CXD92_RS07865 1599621 .. 1599655 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 201
CXD92_RS07830 1593349 .. 1593390 -  -2.1  -4.01411   TACGAAAAACTCAAA TCCGGATCGTGGATATGCGG GCG CGGCATCGCCGCG-TCCGCA CGCTTACTGTGCCTT  56 29
CXD92_RS07825 1591917 .. 1591939 -  -9.8  -3.28712   CTGGGTGGTGGACAA           CCAGCACGGC GAA ACCGTGCTCG           AACTCGACGCCACCA  63 207
CXD92_RS07740 1578222 .. 1578252 - -19.6  -3.14344   CAGGTGGTGCAGTAA       GGCGGCGACCGGCG CGG CGCCCGGCGCCGCC       CGCCCGCATGGAAAA 100 79
CXD92_RS07725 1575018 .. 1575061 -  -9.4   -3.0127   CGAGGGAATTACAGA TCGCCTGAGCGAGGCAGCGG CGCT CCCCTGCCTGGGTGAGGCGC GCGTCCCCGGTTTCA  57 38
CXD92_RS07720 1573615 .. 1573663 -  -3.5  -3.39449   TCCGAGCAACATGAA GGGCTC-CTTCGCGCGCGCCGC GGCAAG GCCGCGCGCGCGCCGTGCGTCG TGCGCCTCAGCTGGT  49 32
CXD92_RS07715 NONE
CXD92_RS07710 NONE
CXD92_RS07705 1571469 .. 1571489 -  -3.3  -3.35046   GCAGTCTCGGAAAGA            CGGATAT TCCCAAT ATACCCG            TTGCCCGGCGGTCCG  46 59
CXD92_RS07700 1570625 .. 1570659 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 411
CXD92_RS07655 1563491 .. 1563508 -  -8.3  -4.13767   GGTGGCACGGCAAAA             CGGTGCC TTGC GGCGCCG              TTTTTTTCGTTGCAT  72 151
CXD92_RS07620 NONE
CXD92_RS07615 1555321 .. 1555331 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 383
CXD92_RS07605 1554203 .. 1554237 - -12.9  -2.61582   CAGGGCATTCAGAAG    CG-CGGACCTGGCCTT GTAC AAGGCCAAGGCCGACG     GGCGCAATCGTGTCC  62 105
CXD92_RS07500 1531578 .. 1531634 - -11.5  -3.65812   GGCTGCCGAACAGAA GCCCGGCCAGTAGCCCGGGCGGCAAGCC GCGC GGCGT-CCGGCCGC-CT-CAGGCCGGGC GCGTGCGCCGGACCT  75 15
        mobA NONE
CXD92_RS07435 NONE
        mobB 1517989 .. 1518001 -  -3.3  -4.36914   CGCTGTGGCAGAAAA                TGGGC GCG GCCGA                CGGCAATGCGCCGCC  67 162
CXD92_RS07400 NONE
CXD92_RS07395 NONE
CXD92_RS07390 NONE
CXD92_RS07385 1508739 .. 1508763 - -11.3  -3.57792   CGACGTATTGCGAAA          GCCTGCGGCTG GAG CTGGCGCAGGC          CGGCGTGCGGGTGGT  70 398
         tal 1502473 .. 1502483 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS07360 1501424 .. 1501434 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS07350 1500137 .. 1500150 -  -4.5  -3.28924   CATCTCGGTGCACAA               CCGCGC CCA GC-CGG               TGCAGGCGGCGCTGG  49 295
        smpB 1493344 .. 1493357 -  -5.9  -2.71364   GTACGCGGCCAAGCA               GGCCG GCCG CGACC                GCATCAGGAATCGCG  47 29
CXD92_RS07290 1489909 .. 1489930 -  -8.6  -4.56597   CGGCGTGCTGAAAAA           GCGCGAGG TCAACG CCGCGCGC            AACGCCGACGTCAAC  83 258
CXD92_RS07280 1488813 .. 1488833 -   -14  -4.77036   CGGCAGCAGGAAAAA            GCCTCGCC CTTGC GGCGAGGC            TTTTTTTCGCCGGGC 100 52
CXD92_RS07270 1485164 .. 1485174 -  -2.4  -3.16492   GCATATCCACGAACA                 CCTG GAC CTGG                 AGGCAGTGCTGCCGC  43 291
         map 1468269 .. 1468286 -  -5.5  -2.87132   GGCGGGGGTCAGAGA             GCCGG GATTTCGA CCGGC              CGTGTCACGAAGGCC  46 1
CXD92_RS07180 1465225 .. 1465240 -  -7.5  -3.30124   GGTGAGCGGGTAGAA              GGCGC GCGCCT GCGCC               ATCTCGGGCGTGAAC  56 420
CXD92_RS07170 1464305 .. 1464361 - -31.9  -2.71364   CTACGCGGCCAACGA CGCCTGACCGGCGCGGCGCGGCCGGCTT GCGC AAGCCGGCCGCGC-G-GCCG-TCAGGCG TTGCGCCGCAACGCC 100 19
CXD92_RS07145 1459322 .. 1459334 -  -3.3  -4.57569   CGATTCTGTCAAAAA                TTGGC GCC GCCTA                TTGGCCGGGTAAAGG  71 117
CXD92_RS07140 NONE
        fliS 1457462 .. 1457487 -  -3.1  -4.82901   GCGGCTGGACAAAAA         GTGCCTTCCTG GTTT CAGGCCGGAAC          GGCAGGCGCAGGGTG  75 14
CXD92_RS07130 NONE
CXD92_RS07125 NONE
CXD92_RS07120 NONE
CXD92_RS07115 NONE
CXD92_RS07110 1454778 .. 1454827 - -11.4  -3.53444   GCATGCTGTCGCAAA TGCGCGCCGTGGTGCGCGCCG-CGC AAA GCGGCGGCGC-CACCGAGGC-CGAA CTGGCGCCTGGGCCG  69 276
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ 1448962 .. 1449013 -  -4.4  -3.30441   CAGCACTTGCGAGAA GCTGGGACCCTTGCCG-GC--GGCGGC CGG GCCGCCTTGCGCGGCC-GGA-CCCGGC GCAGGCGTCAGGGCG  49 96
CXD92_RS07070 1446632 .. 1446649 - -10.5  -2.52464   TTCTGCCGCAATTCA             CGCCCGC GCTG GCAGGCG              AAAAACAGGGCGAAA  56 308
        fliL NONE
        fliM NONE
        fliN 1444477 .. 1444491 -  -5.6  -3.14564   GGATTCGGTCATGAA               GCGGCT TTT AGCGGC               GACTGTTCAAGCGGT  49 18
        fliO NONE
CXD92_RS07040 1443342 .. 1443354 -  -3.3  -2.58544   CGCTATTGGTAGAAG                CTCTG GGC CAGCG                AGCCGAGCAGCAGGT  39 0
CXD92_RS07035 1443020 .. 1443035 -  -5.4  -2.78712   TGGTGAACGCAATCA              TGG-CGC GGC GCGGCCA              GGCGCGTTCAGGACA  45 33
        fliR 1442086 .. 1442104 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACTGGTG 100 153
        flgA 1423820 .. 1423835 -  -5.4  -2.79004   GGATCTTCAAAATAT              TCTCCGC TGC GCGG-GA              CCGGCCCGATGGGGG  45 131
        flgM NONE
CXD92_RS06940 1422942 .. 1422958 -  -9.3  -3.01712   CGGGCGCGCGCAAGA              CGCCCGC GCG GCTGGCG              CCCGCGGCCTTGATG  57 91
CXD92_RS06920 1415911 .. 1415965 -  -7.7  -5.35365   AAAACATAAGAAAAA GCAATATAC-CCGGGAGCCTGTCCCC GAAC GGGGACTGGCTCCCGCTGACTTCTAC TTGCCAGCGCCCCAG 100 102
CXD92_RS06915 NONE
CXD92_RS06910 NONE
CXD92_RS06905 1413448 .. 1413458 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS06900 1412289 .. 1412320 -  -5.7  -3.30214   AATCGACTACATCAA      CGGCGCCATCC-CC AGGCA GGCGGCCCGCGCCG      GCATCCAGGCCCCGG  52 149
        leuD NONE
CXD92_RS06870 1405611 .. 1405621 -  -8.2  -2.57132   GCGGTGGCCTACAAG                 GGCG CGG CGCC                 GGCGCTGGTGGCGCT  51 446
CXD92_RS06840 1398628 .. 1398638 -  -2.4  -3.68351   GGGCCATGATCGAAA                 CGCC GCT GGCC                 ATCCTCAATATCGGC  53 513
CXD92_RS06825 NONE
CXD92_RS06820 1392867 .. 1392899 -  -5.4   -3.4072   CATCCGCGACGACAA     CGC-GCTGACCGCCC GCCT GGGCGCCCGGCTGCA      GGGCGAGTACGCGGC  52 281
CXD92_RS06795 NONE
        clsB 1386547 .. 1386593 -  -9.8  -3.19602   CCTGGTACAGCAATA CCCCGACGACGGCCAGGCCGAC GAT GCCGGCCAGCCAGGCGCCCAGG CGGCGCCGGCGGTGT  62 60
CXD92_RS06770 NONE
CXD92_RS06765 NONE
CXD92_RS06760 1382373 .. 1382395 -  -8.3  -2.87132   GCTGTCGTCCACATA           GCGCAGCGC GGCGG GCGCCGCGG           GGCTCACGAGCGGCG  54 29
        treS NONE
        glgB NONE
        glgX NONE
        treZ 1368957 .. 1369008 - -10.5  -3.04144   CGGGCACGCGCAACA TCCCGCCGGCGCGCGCGGTCAGC ATGGCG GGAGGCCGGGCGCGCCAGCGCGC CAGGGTGTCGGCGGT  60 188
        treY 1365078 .. 1365117 - -15.6  -3.14132   GCTGCCCGGCATGAA  CGGCCAC-GCGCTGGCGCA GGC CGCGCGGGCGCTGCGGCCG  GCCCTGCGCATCATT  78 169
        ptsJ 1359095 .. 1359111 -  -4.3  -3.09908   CGTTCGGAAAATAAC              CGCCCCA TTA TGGGAAG              TCGCCTGGTTGATGT  47 55
CXD92_RS06695 1358425 .. 1358435 -  -5.4  -3.03798   AGGGCGAGAAAGAAT                 GTGA GGC TCAC                 CCGGCCGATGGGCAG  47 186
CXD92_RS06690 NONE
CXD92_RS06685 NONE
CXD92_RS06680 1356194 .. 1356215 -  -9.4  -3.01712   CCTGTCGGTGGAACA           GGCCG-GCC GCCAT GGCGCGGCC           CAGGCGGCGGTGCGG  57 396
CXD92_RS06665 1354571 .. 1354593 - -20.6  -5.41746   AAGCGTCCAAAAAAA           CAGGGCCGCC CGA GGCGGCCCTG           CGATCGCGGCGCGGC 100 51
CXD92_RS06660 1353736 .. 1353758 - -10.5  -3.34398   CGCGGCGCGGAAACA           TCGCCGGCG CGCGC CGCCGTCGA           ATTGGGCGCGGTCAC  63 273
CXD92_RS06655 NONE
CXD92_RS06650 1352272 .. 1352282 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS06645 1351182 .. 1351204 -  -3.3  -3.24747   GCGTGACATGATGAA           CTCCGGG TGGGCAGGG CCCGGCG           AGGCGGGCCGATGCC  46 89
CXD92_RS06640 1350208 .. 1350258 -  -5.6  -3.42996   CACCATCTACCACAA CCCGCGT--TGCAGCACGTCGC-GCA ACG TGCTGCAA-ATGCTGCGCGACGCGGG CATCGAGCCCACCAT  52 403
CXD92_RS06615 1345358 .. 1345371 -  -2.3  -2.62184   GTGCGCGTCAGACCA               GCTTG AGGT CGAGC                GGACGCGCGCCCGGA  38 4
CXD92_RS06610 NONE
CXD92_RS06605 NONE
CXD92_RS06600 NONE
CXD92_RS06595 1343198 .. 1343210 -  -2.6  -2.78384   GTGCGGTTCATGACA                GCGC CCTCT GCAC                GACCACGGCCACCGC  38 5
CXD92_RS06590 1342425 .. 1342441 -  -4.4  -3.10641   GAAGGCATCAGGGAA             CGAG-GG CGGT CCACTCG              GGGCTGGAGAATTTT  47 1
CXD92_RS06585 1341507 .. 1341545 - -10.4  -3.53012   CCGGCGCGCGGCAAA  GGCG-CGAACAACG-GGC CTTGC GCCGCGTTGTTCGGCGGC  GCCCGCCGCCGGCGC  67 41
CXD92_RS06580 1340896 .. 1340908 -  -4.7  -3.02739   GGGAACGGATACAGA                CGGGC CGC GCGCG                GCGTCCGTGGCGACA  45 82
         psd 1339858 .. 1339914 -  -2.2  -2.74192   CAGTGCGGAAGACGA CATGAGAGCTCCAGAAACGGCGGC GATGGCCAG GCCGCAATCTAGCAAGCCCTCATG TATCGATAAAGCGAA  38 56
CXD92_RS06570 1338248 .. 1338280 -  -5.6  -4.31837   AAGAAACTGAAGAAA     GGCGATGCCATCCCGC AGG GCGCGAC--CATCGCC     GTGCCCAACGACCCG  69 461
CXD92_RS06550 1335983 .. 1336040 - -12.5   -3.3514   ATTGACAGTTCACAA CTAGCGGATACTGCGTGCGCAGGGCGCG CTG CCCGCCCAGCG-ACGCGGTCAGCGCCAG CACGACGGGCATGGC  73 193
CXD92_RS06530 1332660 .. 1332693 -  -4.5  -3.84451   CCGCCGAAATCGAAA     TGGTCGAGACACT-GG GCT CCGAGCAACTCGTCCA     TGGCCGCTGCGGCAA  60 296
CXD92_RS06505 1327429 .. 1327449 -  -5.3  -2.53263   GCGACGCCGAACTCA            TCGGCCGAA CTC CTCGGCCAG            CTCGCGCGACCGGCG  44 2
CXD92_RS06500 1326760 .. 1326770 -  -3.2  -3.53811   GGGACCCCGTCGAAA                 TGCG TGA CACA                 TGACGCCGTGAATTG  49 103
CXD92_RS06495 NONE
CXD92_RS06490 NONE
CXD92_RS06485 1324330 .. 1324366 -   -13  -2.71791   ACTCGTGCTCCAAAT    GGCTCCGGCTCCGG TAGTGCGAC CCGGAGCCGGAAAC    CTGGGCGTACGTTGA  67 72
        livH NONE
        livM NONE
CXD92_RS06470 NONE
CXD92_RS06465 1320428 .. 1320438 -  -8.2  -3.60098   ATCGCCCACCTGAAA                 GCGC GCG GCGC                 CGATGCCGTGGTGCT  63 267
CXD92_RS06450 1318273 .. 1318311 -  -4.4  -3.53012   TCGGCCGCGGCGAAA   GCATGCTGACCACGATGT TCT ACATCGTGGCAGGCCAAC   TGGTGTGCAGCGCCG  52 338
CXD92_RS06440 NONE
        trxA 1310088 .. 1310129 -  -2.1  -4.06864   GGGAGATAAGAAGAA GGGTTCGGGCGGCGGGCC ACGGACG GGCCCGC-GCGGGAATCA GGGGGGAATGCGCGG  58 66
         rho 1308755 .. 1308772 - -14.1  -4.54727   GCCCGCAAAGCAAAA             CCCCGGC GCGG GCCGGGG              GTCGGGACGGGCGTG 100 54
CXD92_RS06400 1302177 .. 1302189 -  -4.7  -4.09243   GACATGGCGTGAAAA                GCGGC TTT GCAGC                GGGGAAAAACCGTTA  62 38
CXD92_RS06395 1301329 .. 1301341 -  -6.2  -4.11501   CCAAATACAAGGAAA                CCGC GCGCG GCGG                GTTGGCGGTGAATAT  69 191
CXD92_RS06385 1297954 .. 1297993 - -11.5  -3.05384   GTGCGGGCCATGGAA GCG-CGCCTGCAGCAGGGCG GCG CGCCC-GCC-CAGGCATCGC GCATCGTGGTGTATC  62 181
CXD92_RS06365 1292788 .. 1292821 -  -5.2  -3.14963   GGCATAACGAGTGAA     GCGCTGGACTGCGA ATTGCG TGGCAGTCTAGGGC      CTGGCCGGCGCCGTG  49 133
CXD92_RS06360 NONE
CXD92_RS06355 1291574 .. 1291584 -  -4.6  -4.07568   CGCTTCGCGCGAAAA                 CGCG TAA CGCA                 CGTGCCGGCCGCCTC  62 92
CXD92_RS06310 1279966 .. 1279989 - -11.7   -4.8622   CGCGCCAATGAAAAA          GGCCCGGCA GCGATG TGCCAGGCC           TTGATCAACGATTTG 100 39
CXD92_RS06300 1277317 .. 1277333 -  -5.7  -2.64472   GATGTCGGAAATCCA              GGCGGCC TAT GACCGCG              GCATCCTGCGCATCA  45 268
CXD92_RS06290 1275706 .. 1275716 -  -5.4  -5.69473   GATATCAGAAAAAAA                 TCTC GAT GAGA                 AATGGGGGACGTGCA 100 300
CXD92_RS06280 1275521 .. 1275542 - -17.3   -4.8622   GCGCCCAAGCAAAAA           GGGCAGCCC GGAT GGGCTGCCC            TTTTTTTCTGGTGCC 100 34
CXD92_RS06260 1272575 .. 1272589 -  -4.2  -2.73124   GTTTAGGGTTGAAAT               GACTGG CTC CTAGTC               TAACGAACTGCCCGG  41 71
        kynB NONE
        kynA 1270874 .. 1270910 -  -3.5  -3.40403   CTTCTTTCATGATAA    TTTCCCAGGTTAGCGGG TCG CCAGCCAGGCCGGGCAA    GCAGCCCGGCGCACG  49 152
CXD92_RS06245 1270554 .. 1270569 - -10.4  -5.86061   CGCGAGGAAAAAAAA              GCAGCC CGCA GGCTGC               TTTCTGGTGCGCCTC 100 58
CXD92_RS06240 NONE
CXD92_RS06235 1267208 .. 1267225 -  -6.9   -3.9777   GCCAAGAGCGAGAAA             CACGCCA AGAG CGGCGCG              CATCACGGTGCCCAC  66 147
CXD92_RS06215 1262892 .. 1262908 -  -9.3  -2.73364   CCGTCACCGTAATCA              GCGCGCC GCC GGCGTGC              CCAGGCTGGCGGCCA  55 6
CXD92_RS06210 1262033 .. 1262067 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS06200 1260191 .. 1260223 -   -17  -3.01791   ATTCGGCCGCCAAGA     GCGCCCTGGT-CGGG TGCA CCCGCACCTGGGCGC      TGGAACTGGCCGAGT  82 290
        hpnC NONE
        hpnD NONE
CXD92_RS06175 1254890 .. 1254902 -  -4.7  -2.93073   CCGGCTCAAGAACCA                CGTCG CGA CGCCG                GCCTGAGGAGTCTTC  44 450
CXD92_RS06150 1251766 .. 1251776 -  -3.2  -3.45366   CGGTCAATGAATGAA                 TAGC AGT GCCA                 GCACGACCGGGATGA  48 3
CXD92_RS06145 NONE
CXD92_RS06140 NONE
CXD92_RS06135 NONE
CXD92_RS06130 1247799 .. 1247827 -  -6.6  -3.28712   CGCGGTGCGCGACAA       GC-TGGCCCAGGC GTTC GCCCAGGCCGTGC        GCGATCCGGCCACGG  52 184
CXD92_RS06115 1243968 .. 1243980 -  -4.7  -2.72344   CGGGATGTGCAAGCA                GGCGG CTG CGGCC                GGGGAGATTGTCCAT  43 499
CXD92_RS06095 1240775 .. 1240799 - -13.6  -3.30771   CGACATCCGGCACAA         GGTGCGGCTCG ATGG CG-GCCGCACC          GAACTGGCCGTAGGG  74 251
CXD92_RS06065 NONE
CXD92_RS06060 1230223 .. 1230254 -  -2.7  -3.14931   GGCAGCCCGCATGAA      TCCGGCGGGCCAC GAGGTA GAGGTCCGCCCGC       AGGGCTGGCGGTTCG  43 364
CXD92_RS06025 1226776 .. 1226799 -   -16  -3.21416   GAGCGCTACCAGGAA          GCGCTGCGCGC CTG GCGCGC-GCGC          CATCCCGAGGCGGCA  80 66
CXD92_RS06005 NONE
CXD92_RS06000 1223163 .. 1223190 -   -14  -4.56597   TTGGTTGTCGAAAAA        GCCGCGGCGGGC GCGG GCCCGCCGCCGA         TCGGGTTGCGCTCAG 100 37
CXD92_RS05995 1222240 .. 1222279 - -11.5   -2.9162   GAACTCCGGAAACGA CTG-CACGGCG-GCGCC TTGGTGGG GGCGCACGCCGCGGCAG  GATGGCGCGCCAAGG  63 69
CXD92_RS05990 NONE
CXD92_RS05985 NONE
CXD92_RS05980 1220019 .. 1220051 -  -5.3   -2.9296   GAAAGCCCAACCATA      CCATCGCCCCACGGC GCC GCCGCCATGCGCCGG      TTCATGGCGCCGCGG  46 65
CXD92_RS05975 1218721 .. 1218768 - -14.1  -3.61517   ACCTGTGTCGAATAA CGCACGGGCCGCCGGCGCACGCG CGGG CGCGCGCGCCAT-GGCC-GCGCA AGGCGGCCGCGGTGC  78 300
CXD92_RS05970 1217792 .. 1217806 -    -7  -2.85668   TATCCGCATACCATA               GCGCCG CGC CGGCTC               GTTGCCAAGGCATCC  50 53
CXD92_RS05960 1215561 .. 1215581 - -10.3   -3.6502   CACCTCCTAGGGAAA            CCGGCGGCG GAT CGCCGCCCA            CGGAAAAGTCTAGCA  70 70
CXD92_RS05955 1215029 .. 1215052 -  -7.4  -3.06302   AGGACCTGCAGGGAA          TGCCGC-CCGC GGC GCAACGCGGCA          GCCCGGCCGTGGGCC  52 162
CXD92_RS05925 1208966 .. 1208988 -  -6.8  -3.29144   CGACCGCCGCTACAA           CGGCCTGGCC CTC GACGCGGCCG           AAGGCGAACGCATCG  52 305
CXD92_RS05915 1206956 .. 1206974 - -10.2  -3.44051   GTTCCACTACGAGAA             GGCGCGCA TGA TGGGCGCC             AAGCCTGCGGCCCCC  65 297
CXD92_RS05885 NONE
CXD92_RS05880 NONE
CXD92_RS05875 1198420 .. 1198469 -  -8.4   -3.9392   CTCCAGTGTAAACAA CCCGCCTGCCGCGCCGCGCTGGCGC TCA GCGCCCG-GCGGCGC-GC-GTCCCG CCGTACAGGCGCAGC  70 1
CXD92_RS05870 1197727 .. 1197761 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
        bamD 1186704 .. 1186732 - -21.1  -4.08064   AACGGCCGCGCAAAA        GGAAAACCCGGCC TGG GGCCGGGCTTTCC        TTGGACTGCGCGAGT 100 45
CXD92_RS05800 1182032 .. 1182068 - -27.4  -2.71364   GGATCGGGGCAACGA   CGCAGGCGCCGCACCCG ATGA CGGG-GCGGCGCCTGCG    TTGCGATCAGCGCTT 100 32
CXD92_RS05775 NONE
CXD92_RS05770 1177324 .. 1177334 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 91
CXD92_RS05765 1175816 .. 1175834 -  -8.9  -3.28924   CACGGTGGCCGACAA             GGAAAGC GCGCT GCTTTCC             GGCCAGATCGATACC  59 511
CXD92_RS05755 1174207 .. 1174224 -  -2.5  -3.58343   TCGAGCATCGCGAAA             TCCGCGC CCAG GCGCTGG              CCGGCTCGGTCGTGT  50 376
        mdeB 1161826 .. 1161863 - -20.6  -3.06796   CTGCACCGCAGCGAA   GACGGCATCGGCCGGG CCACGT CCCGGCCGATGCGGCC    GTCACGACTGCCAGG 100 27
CXD92_RS05715 1159263 .. 1159280 -    -4  -3.04144   TTTGCATGGGTAACA             CGGGCG TCTTGG CGCCAG              AAGAGTTATGGAGCC  44 173
CXD92_RS05710 1158586 .. 1158596 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS05700 1157214 .. 1157244 -  -6.8  -3.65046   CCTGTACGGCAAGAA      GCGCCTGCGC-GA AATCGA CCGGCGCATGCGC       TTCCTGACCAAGCGC  57 363
CXD92_RS05640 NONE
        recJ 1137650 .. 1137661 -  -7.2  -3.65812   CGGTTTGTAACAGAA                GGGC GGCG GCCC                 TCAGGCGGCGTGCTC  61 26
CXD92_RS05630 NONE
CXD92_RS05625 NONE
        lysS NONE
CXD92_RS05615 NONE
CXD92_RS05570 1122340 .. 1122358 -    -8  -3.53012   CCTCCTTGCTGCAAA             GCGGCGGC GAT GCCGTCAC             GCGGCAGATGCTGGC  58 170
CXD92_RS05550 1118435 .. 1118455 -  -2.5  -3.31144   CCTTGACGCGCAGAA            TCTCGCTGA CTT TCAACATGA            TGTTCCTCCCGGGGC  44 60
CXD92_RS05545 1117936 .. 1117946 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 74
CXD92_RS05540 1116713 .. 1116738 - -16.9  -3.12595   TGCAATGATGCAATA         CGCCGCGACGCA GAT TGCG-CGCGGCG         TGCCGCTGCGCGTGA  80 219
CXD92_RS05530 NONE
CXD92_RS05525 1113593 .. 1113603 -  -4.6  -3.30124   CGCTATCGCGCAGAA                 CGCC ATC AGCG                 GGCCGAACGCCTGGC  49 374
CXD92_RS05500 1110751 .. 1110766 -  -4.6  -2.57132   GCGCCGCTGGATAAG              GGGTGG ATGG CCAGCC               AACCGTTACAAGTTG  42 53
CXD92_RS05495 1108657 .. 1108673 -  -2.2   -2.8372   TATTTGCCATGAAAC              CTTAGC AGCAG GCTCAG              ACCGCGGCCGCCGTA  40 22
        folP NONE
CXD92_RS05485 1106412 .. 1106431 - -16.4  -5.06414   CCCGCGCAACAAAAA            GGCCCGCC ATCA GGCGGGCC             TTCGGGCAGGTCCGG 100 48
CXD92_RS05480 1105283 .. 1105310 - -21.4  -3.48276   CCTGCCCCGATACAA        GGTGCCTGTCCC CGCG GGGACAGGCACC         CCAGCACCCCGTCGG 100 154
        ppk1 1101361 .. 1101380 -   -15  -5.09259   TATTTCAAAATAAAA            TGGCCGCC CGCG GGCGGCCA             GGCGGCAGCGGGCCG 100 43
        pstS 1100099 .. 1100120 - -10.1  -2.52464   CGCCCCGCGAAGTCA           GGACGGCGA TCGC TCGCCGTTC            ACTGGTCCGGCCAGG  56 68
        pstC NONE
        pstA NONE
        pstB 1097294 .. 1097328 -  -7.7  -3.49858   GCAACTATACCAGAA    TCGGCC-CGCCGGCCG GCCT CAGCCGAAGCGGCCGG     TGATGTAGTCTTCCG  60 9
CXD92_RS05445 1097061 .. 1097101 - -11.2  -3.86346   GCACGCCCGCAGAAA CGCGAAAGCCCCGAC-CGG AAAT CCGTATCGGGGCTTTGACA  TGCATGGAGCGGCTA  77 119
CXD92_RS05440 1095877 .. 1095915 -  -3.8  -3.32844   GTTCGCACGCGAGAA  CGGCCGG-GTGTTCG CCTATGTCAT CGAGCACGCCGGGCG   GCACCCCGACCCCGA  47 104
CXD92_RS05415 1089501 .. 1089511 -  -8.2  -3.53091   ACCCGTTTGCCGAAA                 GCCC GGT GGGC                 GCGCAAGGGCTGATG  61 336
CXD92_RS05400 NONE
        cobA 1083433 .. 1083473 - -14.7  -3.32498   TACGGTACACACCAA CGGCATCGCGCACCGCAC CGAACT GCGCGGCACGCG-CGCCG  AACTGGGCCTGGGCA  79 220
        queA NONE
CXD92_RS05345 1074611 .. 1074637 - -12.3  -2.70932   GGCGCGGCGCAACGA        GGGCCGCGCCGCC GGG GG-GGC-CGGCCC        TAGTCGACCCCGCGC  65 25
        yajC 1074119 .. 1074137 - -17.4  -3.65046   GGGTGAGCGGAACAA             GGCCCCGC CAC GCGGGGCC             TTGTGTGACCTTACA  91 36
        secD 1072147 .. 1072172 -  -2.5     -3.37   TGAATCCGGAAAAAT         TCCATGTTTCGC CTT GCGTATCA-GGA         CGGCGGGCGGCAGGG  46 54
        secF 1071164 .. 1071193 - -22.2  -5.81412   TGCATGTAAAAAAAA       CCCTGCCCGGCC GCATTT GGCCGGGCAGGG        TTTTTTACTACCGGG 100 48
CXD92_RS05325 1069466 .. 1069489 -    -8  -3.61398   CTGGGTGCTCAAGAA          CGTCGTGGCG CGCG CGCCCCGAAG           TGCTGCTTGACGACG  60 403
        miaB NONE
CXD92_RS05310 NONE
        ybeY 1065967 .. 1066002 -  -5.3  -3.31905   ATTTTGCATACAACA    GCGGCCATTGTTCCCC GATTT GGGGCGCATTGGC-GC    CAATCTGCGCGGCGC  51 43
CXD92_RS05300 NONE
CXD92_RS05295 1062898 .. 1062937 -    -5  -3.53444   CCATCCGCCGCGAAA GCGCCGCGGACCTGCTGC CCTGGT GC-GCAAG-CCACGACAC  CGGCGTCATCGTCTA  52 440
CXD92_RS05285 NONE
CXD92_RS05280 1061823 .. 1061836 -  -8.1  -2.80398   TAACCAACTGAACTA               CCGCT CCGC AGCGG                CGTAACTTCTACACC  51 54
CXD92_RS05275 1061717 .. 1061738 - -14.5   -5.7946   CCGGGAAGAAAAAAA           GCCAGTTGC TTAC GCAACTGGC            TTTTCGGAATTTTTT 100 40
CXD92_RS05270 1060272 .. 1060291 -  -4.8  -3.28712   GGTGCTGCTGGACAA            CGTGCCGC AGGA GCGCCGCG             ACGAAGCCAATTCGC  49 235
CXD92_RS05205 1048079 .. 1048113 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 493
CXD92_RS05195 1046828 .. 1046840 -  -4.7  -2.90496   GCCCGCGGGAAATCA                GCGGC GGT GCTGC                GGCGGACGGCTGGGC  44 10
CXD92_RS05190 1046398 .. 1046425 - -11.2  -2.75074   TGCACTGGAACATCA        GCCTGAACGACG CGCG CGTCGATCCGGC         CATCTTCATCGGGGC  59 70
CXD92_RS05150 NONE
CXD92_RS05145 1039175 .. 1039185 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 238
CXD92_RS05140 1037952 .. 1037969 -    -4  -3.60805   ACAGCGTAGCGCAAA             CCGGGC CGTCCT GCCCGC              CGGCGTGGCGCGCGG  51 44
CXD92_RS05135 1037199 .. 1037220 -  -8.1  -3.64599   CTATTACACCGCAAA           CGA-TGTTGC GGT GCAACATTCG           TGTGACCGGGGCGCC  63 48
CXD92_RS05130 NONE
CXD92_RS05125 NONE
CXD92_RS05120 NONE
        fabI 1031363 .. 1031374 -  -7.2  -3.33483   GATCGAAATCATGAA                GCGC CGCG GCGC                 CGAGGTGCCGATTCC  55 470
CXD92_RS05095 1026434 .. 1026444 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS05090 1025410 .. 1025423 -  -3.1   -4.2074   CTCCCAAGAGAGAAA               GGCTT CTTC AAACC                GGGCAGCTAGTTGTG  63 32
CXD92_RS05085 1024132 .. 1024158 -   -13  -4.65895   CGCCGGACGCAAAAA        CGCCCGG-CGC GGTGAG GCGGCCGGGCG         TACGTACTGCCATGG 100 79
CXD92_RS05065 NONE
CXD92_RS05060 NONE
        folD NONE
CXD92_RS05050 1012060 .. 1012095 -   -19  -2.59431   GGCGTCCAGAAGTCA    GCAGGTGCCAGTCCCC CTGC GGGGACAGGCACCTGA     GAGGTCAGGCTTGCA  87 30
CXD92_RS05045 1011275 .. 1011292 - -14.1    -3.965   GCGCAAAAGCAACAA             CCGCGCC CTGG GGCGCGG              TCCGGATCATTGGGT  84 32
CXD92_RS05040 1010853 .. 1010883 - -25.6  -4.07568   CGCGGCCGTCCAAAA       CAGACAGGCCGGCA AGA TGCCGGCCTGTCTG       TTTGCGCAGTGGCGA 100 44
CXD92_RS05020 1004363 .. 1004392 -  -4.3   -4.1822   CGCGAGGGCAAGAAA       CGCCAGATTCGC CGCATGT GCGAA-CTGGTG       GGGCTGCGGGTGGTG  63 182
CXD92_RS05010 1003122 .. 1003150 - -10.2  -4.07885   GATTCTGCGTCAAAA       CCGCCG-GCGGCG TCAG CGCGGCGCGACGG        GCGCGCGCGCCAGCG  78 9
CXD92_RS05000 1000384 .. 1000400 -  -2.2  -4.42238   GCAGTTGAAGGAAAA              CATCGA GAGCG TCGAGG              TCACCCTGTCGGACG  68 234
CXD92_RS04990  997946 ..  997957 -  -7.2  -3.78953   AGGCCCAGGAGGAAA                CCGG CCTG CCGG                 TGCAGCAAGTGGAAG  64 435
CXD92_RS04975  995344 ..  995364 -  -8.1  -3.01712   CGTGGTCCGCGAAGA            GCCGGGGCC TCG GGGCCCGCC            GGCTTCAACACCAGG  53 438
        mltB  979710 ..  979722 -  -4.7  -3.57144   CCGGGCATCCGCAAA                TGGCC CGA GGCCT                ACATGCCGAAGATCT  54 322
CXD92_RS04820  962453 ..  962473 - -18.3   -5.4505   CGCGGCAAGAAAAAA            GGGCCTCGC TAT GCGAGGCCC            CCTCATTGTAGCGGC 100 52
        ubiG NONE
CXD92_RS04810  960919 ..  960941 -  -2.7  -2.77899   TGGGTGGAGCAATCA          GTGGCCGG GTGTGGCG CCGGC-AC           GGGCATGGGGCCCGC  40 59
CXD92_RS04805 NONE
        ssrA  959095 ..  959117 - -13.6  -5.85178   AACAGCCAAAAAAAA           TAGCCAACTT TTG AAGTTGGCTA           TTAGGTAAATACTTG 100 57
CXD92_RS04795  958822 ..  958850 -  -6.9  -3.02471   TGTGTACTATACACA        CTTTTAATGTGTA TAG TACACATTAACAA        ACTATTTTGCCCCGC  51 19
CXD92_RS04790  958593 ..  958619 -  -7.9  -2.84298   GACAGTTCACAACTA         GCAGGCCCCGA TTGCT TCGGGGCTTGT         GTCTCACTTCAAACC  52 29
CXD92_RS04775  957054 ..  957091 - -11.3   -3.6682   TGCTACCCACGCAAA   CGAGAGCCCCGATACGGA TTG TCCAG-TCGGGGCTCTCT   GCTGGGTGCGTCGGA  73 55
CXD92_RS04765  954634 ..  954668 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS04750  952076 ..  952109 - -13.1   -3.0497   AGAGTATCTGGAATA     CCGACGCGCTGCGCGC CAT GCGCGAAGCG-GTCGT     GTACGGAGTGCCGTC  70 111
CXD92_RS04740  949562 ..  949572 -  -2.4  -3.02381   GCAGAACACCATAGA                 CCGG CAT CTGG                 GGGAATTGGTTTCCG  41 119
CXD92_RS04735 NONE
CXD92_RS04725 NONE
CXD92_RS04720  944520 ..  944551 -  -5.6  -3.14132   CGTGGGGGCGAGCAA      GCCGCGCCACCTGG AGGA CGCGGTGGCGGCGC       TGGCCCTGCGCCTGA  47 102
CXD92_RS04705  940783 ..  940802 -  -2.8  -3.53761   CAAGGGGCGGCGAAA            GCG-CGC ATCTTGG GCGTCGC            GGGGGCGCTTGTCAA  49 37
CXD92_RS04700  940176 ..  940210 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGACTTACGC  48 191
CXD92_RS04600  919685 ..  919696 -  -5.8  -3.53811   TCGATCTGCCCGAAA                CCCT GACC AGGG                 TGCAGCGGCGCGATA  57 414
CXD92_RS04590  918150 ..  918197 -  -4.1  -2.71712   GCGCGGCGCCGAAAT CGCTACACTGGACGTACGGGCGCG CGC CG-GCGCAT-CGGCC-GCGCAGCG CCCAAGGAGGCGATC  41 220
CXD92_RS04570  914774 ..  914808 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS04555  911155 ..  911170 -  -3.2  -2.87132   TGGCCTCCTTACAGA              TCCTCG GAAC CGAGCA               GCATCTCGGTCAGCC  41 3
        ilvN  910620 ..  910647 -  -8.2  -2.55074   GTGAATGCTAATGCA        GGGTGGCGCGCC GCCA GGCGCGCCGGTC         AGATTTTCAGTATCC  52 24
        ilvC  909490 ..  909507 - -14.1  -5.79595   GCGGAAAAGAAAAAA             CGCGCCC CGTG GGGCGCG              TCTGGACCAGCCTGC 100 75
        pssA  908423 ..  908436 -  -8.1  -3.27022   GCCAGCCGAGATCAA               GCAGG TCGG CCTGC                CCAGCGTGCGCCAGG  56 199
CXD92_RS04530  907833 ..  907856 -  -4.5  -3.63367   GGTTTCAAGAAAAAC          GAGC-CCCGA GACAA CCGGGCGCCC          TGTTACGCTGTTGCC  55 28
CXD92_RS04525  907437 ..  907472 - -16.8  -5.04601   CTTACAAATGAAAAA    CCGTGGCCGTTGCGAC ATGC GTCGCCCCGACCACGG     TTGCGTCATGGGGAG 100 54
         pnp  905209 ..  905226 - -14.1  -4.66163   ATGCGGACGCAAAAA             CGGCGCC CGCG GGCGCCG              TTCTTGCGTCAGGAA 100 50
CXD92_RS04515  904211 ..  904245 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS04505  901772 ..  901795 -  -3.7  -3.73775   CGCAGCCTTACGAAA          CGGGGCTGC GCTACA GCGACCCCA           AGGATTTCCATGTGA  55 336
CXD92_RS04490  899845 ..  899877 -   -14  -4.66318   ACCAGGGCAAGAAAA      TCCGGGCGCACCGG GCGAT CCGGCGCGCCCGCC      GTCCGGCTGGCGCTA 100 38
CXD92_RS04485  898985 ..  898997 -  -5.5  -3.02074   CAAAGACATTACAGA                CTCCG GAA CGGAA                ACTTAAGCTGCGGCG  47 28
        secG  898493 ..  898522 -    -3  -4.09685   CGGCATCCTGCAAAA      CTTCGACCAGGATC CGAA GATCCTGG--AAAG       TCGGGCATTCTAGCA  59 35
CXD92_RS04475  898311 ..  898336 - -13.3  -4.91109   CCTGGACGACAAAAA         GCCCATAGGCG CTGA CGCATATGGGC          TTTTTTGCTGGCTTT 100 86
CXD92_RS04470  895390 ..  895415 -  -2.4  -3.58343   CGGAGCATCGGGAAA         CCGAACTGGC GCAACT GCTGGTCCGG          GAGGCCGGGGCCCTG  50 123
CXD92_RS04460  893152 ..  893190 - -12.4  -3.87994   AGTGATGCCGACAAA  CCGCCCGCGCCGT-GCG GACGGA CGCTACGCCGCGGACAG   GCGCGTCCGATAGGA  81 11
CXD92_RS04455 NONE
CXD92_RS04450  890178 ..  890188 -  -2.4  -3.35679   CGGCCCGATCGAGAA                 TCGC TTC GCGC                 AGGGCCAGCACCGAC  46 494
CXD92_RS04440  887981 ..  888009 -  -2.9  -3.86015   TATCTGTCCCACAAA        GTCCTCGCTTTGG GCA CCAACTCGCGGTC        ATCGGCGTGCGGTGG  56 91
CXD92_RS04435  886499 ..  886513 -  -5.6  -3.53091   AGGCGTGCGGCCAAA               GCATCG AAG CGCTGC               GCGAGGAACAGCAGC  52 374
        metC NONE
CXD92_RS04415  882384 ..  882442 - -18.7  -4.56597   TTCTTCGTTGAAAAA GGCCACGCGCCGCGGGCGCGGGCCGAACG CAA CCACCGGCGC-CGCCCGCGGCGC-CGGAC CTGCTCGAATCGGAA 100 66
CXD92_RS04410 NONE
CXD92_RS04405  879286 ..  879298 -  -3.3  -3.63627   CGTTCAGATGCGAAA                CGCCA CGG TGGGG                TCGGACCGGACCTTG  53 1
CXD92_RS04380  871876 ..  871900 -  -5.6  -4.00042   CGCGCCATCAAACAA         TGCGGC-CGGC CCGC GCCATGCCGCG          CAACCCATGCTGCAA  63 63
         azu  871165 ..  871186 - -11.5  -2.62184   TGTTTCGCGAGATCA           TCGGCCCGC AGGC GCGGGTCGA            GCGGGCCGAGCACAT  59 142
CXD92_RS04345 NONE
CXD92_RS04340 NONE
CXD92_RS04335  860071 ..  860084 -  -3.7  -4.35461   TCAAGACGATGAAAA               GGGGC TCGC GCCCG                CTCAGGCCGCCGCGT  68 59
CXD92_RS04330  859143 ..  859165 -  -3.3  -3.38046   TGGGTATCCGAAATA           TGCAGCACG CGCAT CATGCCGCC           TCCAGCCGCTGGCCA  48 16
CXD92_RS04325  858321 ..  858335 -  -9.2  -3.14795   AAAGGTTCACGAACA               GCGGCA TCG CGCCGC               GGCGCGCGTCATCCG  59 34
CXD92_RS04320  857327 ..  857342 -    -6  -2.66326   TGAACGGGAAATCGA              CCGCAC CCTG GAGCGG               TTCAGCGACGGCAAG  45 207
CXD92_RS04290  853585 ..  853620 - -26.4  -4.24326   AAACATGATTCAAAA    GCGAAAAAAGCCGCCC CGAA GGGCGGCTTTTTTCGC     GCGGGCACGAGGCCC 100 86
CXD92_RS04285 NONE
CXD92_RS04280  852598 ..  852614 -    -5  -3.05384   GGCGGCGCGATCGAA              CCGCGC CGCCC GCGCCG              GTGGTTCAGCGCGCA  45 31
CXD92_RS04275 NONE
CXD92_RS04270 NONE
        nuoE NONE
        nuoF NONE
CXD92_RS04255 NONE
        nuoH NONE
        nuoI NONE
CXD92_RS04240 NONE
        nuoK NONE
CXD92_RS04230 NONE
CXD92_RS04225 NONE
        nuoN NONE
CXD92_RS04215  838452 ..  838468 - -13.7  -5.78622   GTAGGCGAAAAAAAA              CCGCCTC ATG GAGGCGG              TATCGCTGAAGCGGC 100 50
CXD92_RS04210  835914 ..  835934 - -11.8  -4.98531   GCCGGAAATGAAAAA            CGGCCCCC TTGCG GGAGGCCG            TCGGAACGGCGGGGT 100 52
CXD92_RS04205  833439 ..  833455 - -15.1  -6.09133   CATGCCAAAAAAAAA              CCGGCGC AAT GCGCCGG              TTTTCCCTGCTGCGC 100 49
CXD92_RS04200  832578 ..  832607 - -10.6  -2.65808   ACCGCCAAGAACGCA       GTCGTCGGCCTG ACCCGG CAGGCCGCCGGC        GAAGTGGCCGAATTC  55 266
CXD92_RS04180  828062 ..  828091 - -23.7  -3.03006   AGTAAGCCACACATA       GGGTGCCTGTCCC CGCG GGGACAGGCACCC        ATGAACACTTGACGG 100 114
CXD92_RS04165 NONE
CXD92_RS04160  822457 ..  822467 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS04150  821408 ..  821439 -  -8.7  -3.61398   CCTGGGTTCGAAGAA      CGAGGTGG-AGCGC GTGGG GCGCTACCACGCCG      AAGCGCACGCCAGCT  62 39
CXD92_RS04135  816870 ..  816880 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS04130  815810 ..  815831 - -10.1  -3.01712   GCGCGGCCGGCAATA           CGCCCGG CTCGACGT CCGGGCG            CTGCCGATTGTAGAG  60 60
CXD92_RS04125  814669 ..  814688 -  -4.4  -3.45571   GTGGGGAAATATCAA            TGTATACA TGAC TATATACA             TCAATGGATATCGGC  51 162
CXD92_RS04120 NONE
CXD92_RS04115 NONE
CXD92_RS04110 NONE
CXD92_RS04105 NONE
CXD92_RS04100 NONE
CXD92_RS04095 NONE
CXD92_RS04090 NONE
CXD92_RS04085  805377 ..  805417 -  -3.6  -3.65046   TTGTCATTGTAATAA  CTCCTGGCCGGGCGCCGG ACGGG CCGGCGGCGGGCGCCGCG  CGGCCCGCCGCTCGA  54 44
CXD92_RS04080  804495 ..  804508 -  -5.9  -2.78935   ATATCGGCCAGTATA               GCGGC GGCA ACCGC                GAGCACACGGGTTCG  46 86
CXD92_RS04065 NONE
CXD92_RS04060  799897 ..  799908 -  -5.8  -3.01712   GTGTTGGCTTGAACA                TGCC TCAG GGCA                 TGTAGAAGCCGCCGT  47 18
CXD92_RS04055 NONE
CXD92_RS04050  797737 ..  797748 -  -5.8  -3.93695   TTCACCAGCGAGAAA                GACC TGCG GGTC                 AATCCGCTGGCGCAA  63 522
CXD92_RS03990  781893 ..  781912 -  -4.3  -2.71144   TACGGCCGCGAAGGA            TCGCGCCA TGGCC TGGC-CGA            GTACATGCAGATCAA  40 84
CXD92_RS03955  771808 ..  771833 -  -8.9  -3.70902   GGGCGCATAGCGAAA         GCCGATACCGC AAAC GTGGTGTCGGC          TTTTTTGCGTTCGCG  65 63
        rplU NONE
CXD92_RS03930  768295 ..  768316 - -17.3  -5.45802   GCCTGAAAACAAAAA           GCCCTGCCG CGTG CGGCAGGGC            TCGCCGTTCCGGGGA 100 53
        obgE NONE
CXD92_RS03920  765795 ..  765817 -  -4.1  -3.13073   ACGGTCAGGAATACA           GGACAAATC GGAGG GGCTTGTCC           GGCATGTTGGTTGGT  45 62
CXD92_RS03910  764069 ..  764103 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 310
CXD92_RS03895  762738 ..  762761 - -10.2  -4.41348   TCTCGCTGAAATAAA          GGCGCGCGCCC GGT GGG-GCGCGGC          AGGGGCATTATTCCA  88 56
CXD92_RS03890  760356 ..  760366 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 183
CXD92_RS03885  759290 ..  759334 - -10.6   -2.8294   TATGGTGCACAAGCA CCTCACGCGC-GCGCTA-CGGC ACT GCCGCTCCCGCTGCGCGCGTGG GAACACGGCGCCGAT  57 43
CXD92_RS03875  757625 ..  757655 -  -6.2  -4.27584   ATGTTTAACCGAAAA       GAGATTGAAAGTAA TTA CCACTACCAATCTC       TAAGACGGAACGGCC  70 135
CXD92_RS03870  754996 ..  755009 -  -3.7  -3.36803   CAAGGGCATCGACAA               GCCGG TGGT CCTGC                AGGCGCGCCGGAACG  47 217
CXD92_RS03845 NONE
CXD92_RS03840  748389 ..  748412 -    -3  -4.17556   GAGATCCGCAAGAAA          GTCGAACAGG CGCG CGTGTCCGGC           TACGCCGTCACCATC  61 285
CXD92_RS03830  745917 ..  745927 -  -6.8  -3.09516   CGCCGCAGGATGTAA                 CCGA ACA TCGG                 CCGCCCCTTGTGGAT  52 101
CXD92_RS03825 NONE
CXD92_RS03820 NONE
CXD92_RS03815 NONE
CXD92_RS03810  741002 ..  741012 -  -2.4  -4.41348   GGGCTGGGAAATAAA                 CGGG TTA CACG                 GGGTCCACCGGGACG  65 19
CXD92_RS03805  739374 ..  739413 -  -5.7  -3.54408   TCCCAGCGAAATGAA CTGCTCGGTCG-CGCTGTC GGCC GACAGCGACG-CCGAACTC  CTGGAAGCCGCGGTC  57 197
CXD92_RS03795  738008 ..  738018 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 121
CXD92_RS03790  736948 ..  736969 - -10.1  -3.01712   GCGCGGCCGGCAATA           CGCCCGG CTCGACGT CCGGGCG            CTGCCGATTGTAGAG  60 60
CXD92_RS03780  735730 ..  735757 -  -6.2  -2.79188   CATCGAAGGCAACTA        CGCCAACG-GCCG CCG CGGCACGCTCACG        CCCGATCCGCTGGCG  46 163
        lptD NONE
CXD92_RS03755 NONE
        rsmA  728143 ..  728181 - -10.3  -3.01712   CGCTGCGCGGCAAGA  CCCCGGCCGGCG-TGGC CCGCATC GCCAGCGCCG-CCGGCG  TGCCGGTGGTGGCGC  59 254
         pyk  725224 ..  725257 -  -5.2  -3.61398   GGGCGCCTGGAAGAA     GGTGCCGGTCTACGA GACCT TCATCG-CCGGCGCC     AAGGACGGCTTCAAC  54 454
CXD92_RS03650 NONE
CXD92_RS03645  708990 ..  709027 -  -6.1  -2.66787   GCAACAGCGAGATGA   GCAGCGCCCGGGCCCACC AGC GGCGTGCGCG-ACGATGC   GCGCGAACGCTCAGC  46 36
CXD92_RS03635  707727 ..  707742 -  -6.2  -5.00616   TTGTGGCCCAAAAAA              CTGTAT GGAC ATACAG               TGTATGCGAGCATAG  86 294
CXD92_RS03620  706905 ..  706927 -  -7.6  -3.63991   GATGACGCTCAAGAA           TTGGCCGCCG CTG CGGCCGCTAA           TGCTGTTGGCGCTCG  60 278
CXD92_RS03500  690318 ..  690337 -  -4.2  -2.91274   CTCAGCTGAAGCATA            GCTCGGTGA AGG TCGCCG-GC            GGCTTCGGTCCGATC  43 161
CXD92_RS03455 NONE
CXD92_RS03450 NONE
CXD92_RS03445  681918 ..  681935 -  -3.3  -3.54424   GTTGACGCCCTGAAA             GCGTTCGC GCA GCGC-CGC             CGCTTCTTCCTCGAT  49 52
CXD92_RS03440  680834 ..  680849 -  -4.6  -3.01712   GGGGTCTCTGCAACA              CGTGCC CCAG GGCACT               GTTGGTTTTGCGCTG  45 47
CXD92_RS03435  680436 ..  680451 -  -3.2  -3.94438   CATGCTAACAAAATA              GCAAGC ATAT GCTTTC               TTCGGATGTCGGGTG  58 167
CXD92_RS03420  677223 ..  677246 -   -21  -2.60496   GGCGGCCTGAAACAG          GGCCGCCGCG CCAG CGCGGCGGCC           GCGCGCTTGCTTACC 100 36
CXD92_RS03385  670838 ..  670878 - -12.4  -2.73875   TTCCTCGGAATACGA CCCTGAAGC-GGCGCGCGC CCGG GCGCGCGCCGGCCACTGCG  ACACCCGCGCTCAGC  65 36
CXD92_RS03380  669364 ..  669393 - -15.7  -3.01712   CCCCTGGCTGGAAGA       GGACGCGGCG-GCC TGA GGCGCGCCGCCTCC       GCGTGCGTCAGGCCA  77 33
CXD92_RS03365 NONE
        recQ  664912 ..  664939 - -16.2  -3.14344   GACGGCGCGCACGAA        GTGGCGCGCCGC TCGC GCGGCACGCCGC         GTATCGCCAACCGCC  80 410
CXD92_RS03350  663072 ..  663090 -  -6.6  -3.40403   TTCCGCCGATGACAA             GGATACGC ATC GCGCAGCC             CCCTGTAGCATCATT  55 90
CXD92_RS03345  661937 ..  661967 -  -6.6  -3.39784   GCATCGGCAAGAAGA       CCGCGGAGCGCCTG CTG CTGGAGATGCGCGG       CAAGCTGGGCGCGGA  55 228
CXD92_RS03310  656112 ..  656165 -  -6.5  -3.18264   CTGGTGACCGAGGAA GGCTGCGAACTCA-TCACCCGCGGCG TGC CGGTGCAGGCGCGCGAGATCGAAGCC CTGATGCGCGAATAG  51 50
CXD92_RS03300  653269 ..  653293 - -14.3  -2.87132   TGCGCGTCGGACATA          CCGCACCCTGC ATG ACAGGATGCGG          CAGATGGGTGCTCTG  71 218
CXD92_RS03295  652541 ..  652555 - -11.4  -2.91274   CTCAGCCGAACGACA               GGCTGC CTT GCAGCC               CTTCATTGACCGCTA  61 215
CXD92_RS03285  650485 ..  650496 -  -2.2  -3.53566   AGCCAAGAAGAAAAG                CAGA CTGG TCCG                 ATGCCAAAACCCGCA  48 224
CXD92_RS03280  649236 ..  649274 - -18.8  -2.79831   GTCATCCGAAAACAG   CCAGCAGGTGGCGAGGCG CGA CGCCTCGCCGCCTGATTG   TAGTTGACGACGCGC  87 58
CXD92_RS03275  648299 ..  648331 -   -10  -3.53012   GCCCTGGGCCGCAAA     TACCACGGCCTGATT CCGG AATAAGGCCG-GGTA      TCGAAGCCGCGCTCA  67 38
CXD92_RS03265  645843 ..  645862 - -11.4  -3.21354   GCATACAGCCAGCAA            TCGCGCGG CTGG CCGCGCAA             CGCTGCCGGCATCCA  66 53
CXD92_RS03240 NONE
CXD92_RS03235  641730 ..  641744 - -12.8  -4.27316   CGCCCCAAGGCAAAA               GCCCCC CTG GGGGGC               AGCAAGCTGGCGCAG  91 69
CXD92_RS03230  639965 ..  639983 -   -11  -3.13403   GCTGGGCGAGGAAGA             CGTCGAGA ACT TCCCGACG             CTGCTGGTGCAGGCG  64 190
CXD92_RS03220  638846 ..  638856 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS03215  637806 ..  637831 -  -9.7  -5.00616   GGTTTCCGGAAAAAA         TG-AGGCCCCCC CCG GGGGGGCGTGCA         GGGCAATGCGCTAGA  95 36
CXD92_RS03210  636832 ..  636860 - -12.3  -2.87132   GTGGTTGCGGATAGA        TGCCGCCCCGGGG CGG CGCCGATGCGGCA        CCGCAACAAGGAGCA  66 139
CXD92_RS03205  635797 ..  635809 -  -9.1  -3.71917   ACCGGAAACCGGAAA                CGACC CCA GGTCG                CCTGTTAGTCAGGCT  68 183
CXD92_RS03200  631282 ..  631340 - -22.6   -2.5474   GAAAAGCAATAAAGG CCGCGTCCCAAT--G-CGGCCGGGCCGCGC ATC GCGCGGCCCGGCCGGCCGATCGGG-CGAGG CCTGCGCGCCCGCCG 100 57
CXD92_RS03190  629246 ..  629266 -    -9  -5.40072   CCTTGGGCAAAAAAA           GAGGCCACC CGAA GGTGGCC-C            GAATTCCAGCTCTGC 100 95
CXD92_RS03160  624408 ..  624430 - -16.2  -3.34715   GACGTGCTGGAAACA           GGCTGGCCCG AAC CGGGCCGGCC           GCCCCTCATGGTGTC  82 158
CXD92_RS03100  613320 ..  613368 - -13.8  -3.35679   CCCTTCCAGTGAGAA CGGGCCATCG-GCCCGG-CCGC TGTCGGC GCGGACCGGGCACGCCGGGCCG CAACGACCTGCGGCG  77 207
CXD92_RS03095 NONE
CXD92_RS03090 NONE
CXD92_RS03085  609628 ..  609677 -  -9.7  -5.07011   CAGATAAAGGAAAAA CGATCCCGGGCCGGGCGGCGTCC CGAC GGACGCCCGCCAGCCCTAATACG CGCCGCCGATGCGGT  95 18
CXD92_RS03075  606304 ..  606355 -  -3.6  -3.14132   GGCCTCGCGCATCAA CGCCTCCTACGCCG-ACCCGGC CTGGCTGGCC GCCGGGCGCGGC-TCGGGCGCG CTGTGAAGGGTGCAA  45 125
CXD92_RS03065  604471 ..  604487 - -13.7  -5.60993   CGCCTCAGAAAAAAA              GCCCTCC GCT GGAGGGC              TTTTTCGTGGGCCGC 100 47
CXD92_RS03050 NONE
CXD92_RS03045 NONE
        ftsY  596389 ..  596414 - -20.5  -2.90496   CCGTTCTGGAAATGA         CAACGCCGCCC GGAC GGGCGGCGTTG          CGGGCAGGCGCGAAC 100 46
CXD92_RS02965 NONE
CXD92_RS02960 NONE
        nusB  585926 ..  585958 - -11.1  -3.72695   ACTCCTGCCAGCAAA      CGCGAACGGACGCGC CGC GCGGGCGCGCCCGCG      GAAGGTCAGCGCCGC  73 31
        thiL NONE
CXD92_RS02945 NONE
CXD92_RS02940  583669 ..  583712 - -14.4  -3.28745   GCGGTAAGAACGTAA CCCCCCGGGTGCCTGTCCCC GAAG GGGGACTGGCACCCGCTGAC TTCTCAGGGTGCCTG  75 119
CXD92_RS02915  576716 ..  576739 - -19.6  -6.06723   CTTCCCAAAAAAAAA          CCCCGCCAGG TTCG CCTGGCGGGG           TTTTTCATTGGAGCT 100 44
CXD92_RS02865  565992 ..  566002 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 192
CXD92_RS02855  564943 ..  564953 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS02850 NONE
CXD92_RS02845  562976 ..  562990 -  -3.4   -4.2828   CCGCATCCAGGAAAA               GGCGAC CGT GCTGCC               CGATGGCGGCGAAGT  67 245
CXD92_RS02830  560195 ..  560221 -  -2.8  -5.06103   ACAATTTGCAAAAAA         TAGCCAGACCGC TGG GCAGCCGGACAA         GCCGCGCTGCTCCCG  79 442
CXD92_RS02820 NONE
CXD92_RS02815  559412 ..  559455 - -22.8  -2.72471   GCGCCACCAGAGAAT TCAAAACAAAATGCCCGCAA TCGC TTGCGGGCATTTTGTTTTGT GCGCGATGAAGGACA 100 80
CXD92_RS02795 NONE
CXD92_RS02790  554567 ..  554580 -  -5.9  -3.30474   GTTCACAACTAGCAA               GGCCG GCTA CAGCC                AGCGCTCGAACAGGC  53 18
CXD92_RS02765  548840 ..  548862 - -12.7  -4.57569   TGATGTGCCCAAAAA          CCCCGGTCGC GCAA GCG-CCGGGG           TTTTTTCTTTGCGCC 100 57
CXD92_RS02755  547894 ..  547922 - -15.4  -3.72576   CCTGCCTTCATGAAA       GCCCCGGTCAATC GCAT GATTG-CCGGGGC        TTTCTCTTTGCCGCG  85 46
         rnr  544881 ..  544906 -  -6.7  -4.08064   AACGCCGCCGGAAAA         CGGCGGC-GGGC CGG GCCCTGCGGCCC         GGTCTACGGTGCAAT  67 80
        rlmB  544065 ..  544087 - -12.6  -3.03124   TCGGACGTTCGAAGA           GGCGCGCGGC GCG ACGGCGCGCC           GCTGCAAGAGTTTAC  67 37
CXD92_RS02735 NONE
CXD92_RS02730  541986 ..  542000 -  -3.4  -4.66537   GCTGTCAAGAGAAAA               CAGCGC CCT GAGCCG               CGCCAATACTAGCTT  71 105
CXD92_RS02725  541458 ..  541470 -  -9.1  -3.64703   GTTTTGTTAGGCAAA                TCGGC AGC GCCGA                TTTGCCTTTGCGTCC  68 42
CXD92_RS02720  541203 ..  541236 - -12.4   -5.4505   GCGCGCAACAAAAAA    CCCCGTGCG-GTGCGC CGAT GCGCCCTCGC-CGGGG     TTATTGCGCCTGCTT 100 92
CXD92_RS02715 NONE
CXD92_RS02710 NONE
CXD92_RS02705 NONE
CXD92_RS02700 NONE
CXD92_RS02695 NONE
CXD92_RS02690  534821 ..  534833 -  -4.7  -3.69068   GGACGGCAAGAAATA                GGCGG CAA CCGCG                CGAGGGTGCCTGTCC  55 98
CXD92_RS02670  530295 ..  530353 -  -4.3  -3.15544   GGGCACCCGGACGAA TTGGCGGCGGGCCACTGGACGGTGGGCTA CGC CAGCCCACAGACCGGCCGCGCGCTGCC-- CTGGGAATGCGCCAC  45 331
CXD92_RS02640 NONE
CXD92_RS02635  524460 ..  524470 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS02630  523444 ..  523456 -  -4.7  -3.57144   GGCCCGAGCCGCAAA                GCGCC CCG GCCGC                TAGCTGTGAACTGTC  54 25
CXD92_RS02620  521044 ..  521072 - -13.1  -3.14564   GCAGCTGCGCATGAA        TGCCTACGCCACC CAT GGCGGCGTGGACA        AGAAGCGCTTCGAGC  68 275
CXD92_RS02590 NONE
CXD92_RS02585  515594 ..  515620 -  -6.4  -3.87373   CAGATCGGCCAGAAA         GGCCACGGCAAG GCC CTCGACTCGGCC         CACTGAGGGCCGCTT  62 50
         smc  510489 ..  510510 -  -2.9  -3.28447   TCACTCATGAGAATA           TCCCGC-GCC TAA GGCAGCGCAA           ATCCGAATATGGGTT  46 41
CXD92_RS02570 NONE
        ligA  507270 ..  507299 - -19.5  -3.15663   AGCCATCGCCATCAA       CAAAATTGCCCGC TTTC GCGGGCAATTTTG        TTTTCGGCTGCCGGG 100 59
CXD92_RS02540 NONE
CXD92_RS02535 NONE
CXD92_RS02530  503125 ..  503141 -  -4.3  -3.05471   AGTATCAAATAACCA              CCCCGAC CCC ACCGGGA              TCAACCCTAATCCGG  45 131
CXD92_RS02525  501752 ..  501775 - -19.6  -2.62735   ACACGGCGCATACGA          CGCACCGGCC CTCA GGCCGGTGCG           AGGTGAAGCAGGAGA  93 101
CXD92_RS02520 NONE
CXD92_RS02515  498476 ..  498495 -  -7.8  -3.29461   CAAGGGCTTCGACAA            CGCCATCA TGCT CGACGGCG             CGGGCCATGTCGCGG  55 392
        pncB  486668 ..  486685 - -14.1  -4.17048   GGTTGGCGAAAACAA             GCCGGCC CTCA GGCCGGC              GGAAGCTGGAACACC  91 16
CXD92_RS02445  486146 ..  486185 -   -18  -4.08945   ACCATCCCGGCAAAA  TGAAGGCATTGCGGCATC GGCC GATGCCGCAATGCCTGTA   CCGTCCCGAGGCGCG 100 114
CXD92_RS02430  482426 ..  482440 -  -4.2  -4.09685   CCGGAGCGTGCAAAA               GACCTA GTG TAGGGC               ACGCGGCCGCCCCCG  61 64
        argE NONE
        trpB NONE
CXD92_RS02415 NONE
CXD92_RS02410  478114 ..  478145 - -10.8  -4.67353   GCATGCATGGAAAAA      TAACAACGCCCGGC CTGG GCCGGGCGTTCGCA       GGCACTGCCGGCGGG 100 46
CXD92_RS02400  476108 ..  476161 - -13.7  -3.68359   GCCGGAAAATCATAA GACCACTCCTCGGGTGCCTGTCCCC GCAG GGGGACTGGCACCCGCCAATTGTCC CCGCTGCGGCAAGGG  80 86
CXD92_RS02395  474971 ..  474997 - -23.8  -3.92869   TCACTGACGCACAAA         GCGGGTTGCGGC AGC GCCGCAACCCGC         TTTTTCCTGCTGTGC 100 66
CXD92_RS02385  470351 ..  470363 -  -4.1  -3.42809   AATACCACCAACGAA                TAACC CAT GGTCA                GGCCGTCTCCAGTTG  49 23
CXD92_RS02380  469580 ..  469637 - -15.6  -3.27408   TCTTACCCAAATAGA CGGTGGCGTGCGCCGCGCTATTCCGTCGC CGG GCGACGG--CAGCGCG-CGCATGGCGCCG ATCCAGGTAAGACAG  80 75
        msrP  468578 ..  468594 -  -2.1  -3.16564   TGGGGACCTCAGTAA              TTGGCCC GCA GGTCCAG              GCCCTGGTAGAGGCT  42 2
        msrQ  467701 ..  467735 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS02355  465496 ..  465527 -  -5.1  -4.03234   GTTGCGGCATAGAAA      GCTGACGCCCGC GGCCGCCAG GCTGGCG-CAGC      TGGTGCGCGACCTGA  63 77
CXD92_RS02345 NONE
CXD92_RS02340  462538 ..  462587 - -13.5  -3.96148   GTTTTCCACGATAAA CGGCTGGCCCAGCGCCGCGGCCA GCTTTT CGCCCGCGGCGC-GGGCG-GCCA CGTCGGTGGCCTGGC  84 219
CXD92_RS02330  461459 ..  461476 -  -2.7  -3.14132   CTGCTGCTGGACGAA             GGCAA TGCCTATC TTGCC              GCGGGCCTGGCCGGC  43 303
CXD92_RS02320  460096 ..  460141 - -10.4  -3.05384   CCCTTGCCCATGTAA TGCGTGACGCGCTACTTAAC TTGGGC GAATAGTAGCGCGTGACGCA TTATATAAGAATGAG  60 117
CXD92_RS02315  456681 ..  456691 -  -3.2  -3.59979   GTTGGGCATGGCAAA                 CTCC TGA GGAA                 GGCAAGAATAGGATT  49 39
CXD92_RS02310 NONE
        pruA NONE
CXD92_RS02300  452457 ..  452470 -  -5.9  -3.34947   CAACAAGGCCCACAA               CCGGC ATCA GCCAG                GCACGCATGCGGCGA  52 384
CXD92_RS02290  451594 ..  451628 - -22.3  -3.53012   CTGCGTTGCGCCAAA    GACAAAGGCCGCCCGG CATG CCGGGCGGCCTTTG-C     GGGCAGCGCGCCTAG 100 42
CXD92_RS02285  450519 ..  450529 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS02280  449321 ..  449334 -  -5.3  -2.83403   CGCGCGGCAGGAAAT               GAAGA AAGG TCTTC                TCGCCATGCCGCCGG  46 206
CXD92_RS02255  442716 ..  442746 - -12.5  -3.29144   CCACGTGCCGTACAA       GGGTACGTCGGCC GCGCT GGCCGACGTGGCC       GGGGGCGTCGTGCAA  70 423
CXD92_RS02230  438142 ..  438152 -  -6.8  -3.51825   GGACTCGAACGAGAA                 TGCG TTC CGCA                 TGGCGGCGTCGATGG  58 378
CXD92_RS02220  435240 ..  435252 -  -6.2  -3.60792   CCTCGAATGGTGAAA                CGCC GGACA GGCG                GGATCTGTGGAAAGT  56 89
CXD92_RS02215  434831 ..  434851 -  -2.5  -3.13906   GCTAACGGAAAACCA           CCCGCCGA CGCACC CCGG-GGG            AGACCCGCCCTTGAC  42 46
CXD92_RS02210  434262 ..  434287 - -18.3  -5.42862   ACAGGCCGAAAAAAA         GCCCCG-CGGCC TGC GGCCGGCGGGGC         GTGTACGGCGCCGGG 100 51
CXD92_RS02205  433412 ..  433440 - -10.3  -3.55444   TCTGGATGGGGGAAA       GCGGCCGGC-CGG GCTTG CCGTGCCGGC-GC       ATTGGTGTCACTCTA  67 89
CXD92_RS02190  429178 ..  429195 -  -3.3  -3.08464   CTACCACTGAGCTAA             CCACCCC GAAA GAGGCGA              AATTCTAGCACGAAA  44 73
CXD92_RS02185  429066 ..  429100 - -19.5  -3.54489   GGAAGCGGAAATGAA    GAAGGGCCGGT-GCTT TTGC AAGCGACCGGCCCTTC     TGGGATGCTGGTGGG 100 34
CXD92_RS02180  428552 ..  428578 - -11.5  -2.78384   CGTTGTTCGACGATA         GCCCAGGCCTG GCGCA CAGGCCCGGGG         ATGCGCACAGACAGC  62 101
CXD92_RS02175  427102 ..  427147 -  -7.4  -3.86822   GAAGCCTTCGAGAAA CTGGGCGCGCCGCC--CCTGCC CGAG GGCAGGTAGGCGGCTGGCGCCG GGCTAGAAGAAGCTC  66 28
CXD92_RS02150 NONE
CXD92_RS02145 NONE
CXD92_RS02135 NONE
CXD92_RS02130  418015 ..  418052 - -14.7  -3.15699   ACGCATCTATGAAGA   TGCCGTGGCCGACTTCG TACG CGACGCCGGCCGCGGCT    ATGCCGGCCGCCAGG  77 87
CXD92_RS02105  414443 ..  414470 -  -3.9  -2.78996   CATCCTGATCGAAAT        GGGCAGGCCCG TCTGCG CGCGCCGTCCC         GCGAACCGCCGCTGC  41 41
CXD92_RS02100  413364 ..  413402 -   -13  -3.52093   ATATTGGAACCATAA   TCCGCGGCACCCGGCCCA TAT TGCATCCGGCGCCGCGGA   TTGCGGGCGGGCCAT  77 53
CXD92_RS02095 NONE
CXD92_RS02090 NONE
CXD92_RS02085  409657 ..  409667 -  -5.4  -2.94924   CCTGGATGGAGAAAG                 CTCT ACC AGAG                 GCTCATTCCTTGTAC  47 28
CXD92_RS02080 NONE
CXD92_RS02075  406968 ..  406996 - -11.7  -3.81755   ACGCGTGAAACAGAA        GCAGGGTGTTCAC GAT GTGAACACCCAGG        GACGGGCGCCGGCTT  79 59
CXD92_RS02070 NONE
CXD92_RS02065 NONE
CXD92_RS02060  403682 ..  403698 -  -5.1  -3.78034   CATCGACATCAAGAA              GCTGG GACGTAT CCAGC              GCCCTGGCCACCGGG  60 494
CXD92_RS02045  400745 ..  400769 -  -9.2  -3.64822   ACCGGTGTAGCCAAA         GCGGGCCAGCG TCTG CGC-GGCCAGC          CGCGCGCGCGGGTCG  68 347
CXD92_RS02035 NONE
CXD92_RS02030 NONE
CXD92_RS02025  396213 ..  396269 -  -6.6  -3.14051   TTATTTCCAGGAACA CCCG--CATCCCACCGAAGGCACGAT ACGCACG ACCGCGCCGCCGGTCGAATGGTCGGG CACGCCCGGCGGGTA  50 237
CXD92_RS02005  392821 ..  392831 -  -3.2  -2.78816   TCATCGGCCATGACA                 CATC GCT GACG                 GGGTTTGGCGGCGGG  40 151
CXD92_RS01990 NONE
CXD92_RS01985 NONE
CXD92_RS01980 NONE
CXD92_RS01975  388599 ..  388611 -  -3.3   -3.6968   CGAGAACCCCAAGAA                GCTGA AGT TCCGC                GAACTGGAAGCCGCC  55 436
        argB NONE
CXD92_RS01960  386176 ..  386208 - -11.9  -3.09635   AGGTGGAGTAGGGAA      CCCGTCGTCAGCCGC GCA GCGGGCGACGACGCA      ACAGCAAATCACTGA  66 0
        slmA NONE
CXD92_RS01950 NONE
CXD92_RS01945 NONE
        gatC NONE
        gatA NONE
        gatB  373206 ..  373224 - -10.2  -2.62515   AATCGGTCGAGATCA             TCCGCGCC GCC GGCGCCGA             GCCCGCCGCGGTGCT  55 359
         xth  371545 ..  371556 -  -7.2  -4.25104   TTCGTCGGACGAAAA                GCCG GAAT CGGC                 CGCAAAACCAGTGCT  72 313
CXD92_RS01890  369761 ..  369790 -   -18  -3.93262   CCCAACAAATGGAAA       TGCCGCTGACCA TCGTGC TGGTCAGCGGCA        TGATCACCGGGTGCG 100 313
CXD92_RS01875  367102 ..  367145 - -11.6  -3.15544   GGTCAGGCGCATCAA GACCGGCG-CCGGCGCGCA TGCGTTC CGCGCGCAGGGCGACGGCC GCCATCTGTTCGTCA  64 284
CXD92_RS01835 NONE
CXD92_RS01830  358022 ..  358032 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 73
CXD92_RS01825  356801 ..  356845 -    -4  -2.78463   AGTGGCGCGAGCAGA CGCTGTCCGAAGCGGGCGAC CTGGT GCTGGCCGCGCCGGATACCG GCCTGGACGCCAAAG  40 198
CXD92_RS01800  354507 ..  354541 -    -4   -4.9792   CATTTTAGATAAAAA     CCGCGCGCATGCAACC GGT GCCTGCCGGCGCGCCA     GCGCCGACGGCCCGC  79 115
CXD92_RS01795 NONE
CXD92_RS01790  352887 ..  352900 -  -2.3  -2.64616   TTCCCATCGAGAGCA               GGCAC GAGC GTGCT                TGTGCTGTCGATGAC  38 120
CXD92_RS01785 NONE
CXD92_RS01780 NONE
CXD92_RS01775  348215 ..  348267 - -16.2  -3.05844   TCGGCCAGCGGAATA TGCACCGCGCCGCTGGCGGCGG CGAGAATGC CCACCGCCAGCAGGGCAGCGCC CAGCGCCAGCAGCAG  79 60
CXD92_RS01770 NONE
CXD92_RS01765  346497 ..  346522 - -11.9  -3.57144   TGCGCCACCTCGAAA         CCGGCGC-CTGA GGT TCAGCGCGCCAG         CACCAGCAGGCGGCC  72 14
CXD92_RS01755 NONE
        alkB  344481 ..  344497 -  -9.3  -2.52464   TTGCGGCCGAATTCA              GGCGCCG GCG CGGCGCA              GCGTGAAGTTGATGC  54 6
CXD92_RS01745  343866 ..  343876 -  -8.2  -3.53012   TGCCGGCGTTGCAAA                 CGGC TCA GCCG                 GCCTCGCGCAACAGC  62 19
CXD92_RS01740  342295 ..  342312 - -12.7  -3.06915   AGGGACGCTACGCAA             GCCGGCT GGTC AGCCGGC              CCGAGCATCGCGACG  66 346
CXD92_RS01715 NONE
CXD92_RS01710  338160 ..  338174 -  -8.5  -2.56596   GTCGGGAGCAATCTA               CGCGG GTCGG CCGCG               CGCTGTCTGTTTACT  52 64
CXD92_RS01705 NONE
CXD92_RS01700 NONE
CXD92_RS01695 NONE
CXD92_RS01690 NONE
CXD92_RS01685  333231 ..  333265 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS01675 NONE
        lptG NONE
CXD92_RS01665  329031 ..  329043 -  -4.7  -3.01712   CGTTCGTGGCCAAGA                GCGAG ATC CGCGC                CTGGCCGGTCATCGG  46 510
CXD92_RS01630 NONE
CXD92_RS01625 NONE
CXD92_RS01620  322268 ..  322306 - -10.2  -5.80951   ATCCAAAACAAAAAA   GTGAAGCCCATCGGATCG TAA CAATCCGATGGGCCGGGC   CCTGCCCGTCGCGGC 100 45
CXD92_RS01615  319958 ..  319970 -  -2.7  -2.80074   GTTTTTACAAGAGGA                TCCAT GAC ATGAA                AATTCTGCAACCGCC  39 516
CXD92_RS01550 NONE
CXD92_RS01545  306126 ..  306142 -  -9.3   -2.7185   ATCATGGTGGAATTA              TGCGCCG GGC CGGCGCC              GGCGTGGCCGGCCTG  55 41
CXD92_RS01540  304917 ..  304951 -  -7.8  -2.58999   CGCCCACAGACCAAT     GGCAAGGCCGAACG CTTCATC CAGTCGGCCTTGCG     TGAGTGGGCTTACGC  48 191
CXD92_RS01530  303762 ..  303777 - -11.8   -5.4505   TTGGCCAACAAAAAA              GCCGCC CGGA GGCGGC               TGGAAGGTCGGCTTC 100 42
CXD92_RS01525 NONE
CXD92_RS01520  301815 ..  301838 -  -3.1  -3.51934   CCTGGCTGAGAAACA          TCG-AGCCGA ACTTG CCGGCCCCGA          TCAACGCCACCCGCA  49 219
CXD92_RS01505 NONE
CXD92_RS01490  294229 ..  294259 -  -8.8  -2.66316   GCGGCGAGCAGATCA       CCGCCGTGGCGCTG GAC CTGGGCTACGGCAG       CCCGGGCGCCTTCAC  51 151
CXD92_RS01480 NONE
CXD92_RS01475 NONE
CXD92_RS01470 NONE
CXD92_RS01465  289077 ..  289087 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS01460  287722 ..  287750 -    -6  -3.08679   CCGCGTGATGGAAGA       CATCGTGCGCACGG GCG CCGTGCGG-CG-TG       GCTGGTTCGGCATCG  48 348
CXD92_RS01450  285995 ..  286021 -  -7.9  -3.23853   CCGCCGCAAGGAAGA        GGCCGCGCCGGA AGCG CCCGCCGC-GCC         GCCGGAAGATGTCAC  53 114
        petA NONE
CXD92_RS01435 NONE
CXD92_RS01430  282396 ..  282427 - -18.8  -3.94846   GTATGAAAAGCGAAA      GGCCAGCGCC-GCCA AAT TAGCAGGCGCTGGCC      CCGATTGCCAGGCGG 100 123
CXD92_RS01425 NONE
CXD92_RS01420  281224 ..  281248 - -17.2  -3.16191   CTACACCGGCATGAA          CGCAAGCGGC GCATG GCCGCTTGCG          AGGGACTGCATTGTA  84 73
CXD92_RS01415  281104 ..  281124 - -13.3  -5.07011   TACATAAACGAAAAA            GCCGTCTCC AGA GGAAACGGC            CTAGATCGTTGATTT 100 44
CXD92_RS01400 NONE
CXD92_RS01395  278854 ..  278893 -  -8.6  -3.02144   TCAGCGCCGCCAACA  CCATGCGCCTGG-ACAACA TGG TGCTGTACCAGACGCCCAG  CCTGGATGGTTTCAA  55 372
CXD92_RS01325 NONE
CXD92_RS01320  264644 ..  264659 -    -6  -4.07618   GCCGCAACAAGGAAA              CCGAGC TCGA GCGCGG               CACGGCGCTGGAAGC  66 190
CXD92_RS01310  262020 ..  262035 - -11.8  -3.57144   CCGTGCACGCCGAAA              GCGCCC CGCG GGGCGC               TTTTTTCTTGCGCGC  72 46
CXD92_RS01300  259863 ..  259885 - -12.7  -3.24747   GGGCGACATGACCAA          CGCGCGCCGC TAGA GCGGCGC-CG           GGCGCGTCAGTTGGG  71 32
CXD92_RS01290 NONE
CXD92_RS01285  256341 ..  256378 -    -9  -3.35679   CGCGGGCAGTGAGAA   GCGGGCGCCCGTCCCC GTTGGG GAGGAGCGACACCCGC    GGCAAGGGTGCCTGT  63 127
        mutL NONE
        miaA  252751 ..  252780 - -23.7  -2.78816   TCATGGCGTATGACA       GGGTGCCTGTCCC CGCG GGGACAGGCACCC        TTGCTCAGTCGGGCA 100 30
CXD92_RS01260 NONE
CXD92_RS01255 NONE
        pcnB NONE
CXD92_RS01245  247960 ..  247973 -  -4.5  -3.38326   CAGAAGCTGAACGAA               GCGTCG GCG CG-CGC               GCTGAACACGCCGGC  49 189
CXD92_RS01225  242387 ..  242418 - -15.9  -3.76413   TTGCAAAATGGGAAA      GGCATCCGGTGCG TGCGAG CGCACCGGACACC       ATTGGACGGCCTGCG  90 42
CXD92_RS01220  241406 ..  241416 -  -2.4  -3.29144   CGACCTGGCGCACAA                 GGAC CTG GGCC                 TGGCGCTCGAACTGG  44 257
CXD92_RS01200  238424 ..  238434 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS01195  237303 ..  237317 - -11.4  -2.91274   CTCAGCCGAACGACA               GGCTGC CTT GCAGCC               CTTCATTGACCGCTA  61 128
        thiC  231370 ..  231384 -  -8.5  -3.02263   ACACCTCGGTCAAGA               CCGCC TACAC GGCGG               CCTGACCCGCATGGC  55 72
CXD92_RS01150 NONE
CXD92_RS01145  226508 ..  226518 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS01140  225084 ..  225133 -  -9.8  -2.82015   GCCATAGGCAGCATA TCGGCGACGGCGGCGCC--GCGGA TTTT CCCGCTTGGCGCGGCCGACGCGGC GCCGGTAGGCATCGC  56 396
CXD92_RS01130  223522 ..  223534 -  -2.6  -3.55444   GCGGCATGTGCGAAA                CCGA TTTTT CCGG                GTACCCGGACTGCCG  50 368
CXD92_RS01120  219865 ..  219893 -  -2.3  -4.92756   ATGATCAAAAACAAA        TCATCCTGGGACG CAG CGCCTCAAAATGT        TGGGAGGCTTCCGGG  76 237
CXD92_RS01115  216601 ..  216630 - -23.7  -2.78816   TCATGGCGCATGACA       GAGCGCCTGTCCC CGTG GGGACAGGCGCTC        TTGCCGCTGGTGTCG 100 111
CXD92_RS01110 NONE
CXD92_RS01105  213853 ..  213866 -  -3.7  -3.33696   GGGCTCCGTAAGGAA               GGCGC GGCG GCGTC                AGTGGGTCAGGTAAC  47 24
CXD92_RS01100  213039 ..  213072 - -12.4  -2.82519   CGAGCACATCAACCA    GGCGCTGCGGCGCCGC TGAG GCGGCGC-GC-GCGCG     ATGCGCGAGCAGGCG  66 61
CXD92_RS01090 NONE
CXD92_RS01085  210714 ..  210734 - -19.7  -4.11216   CTTCGATCGGTAAAA            GCCCCGGCC GCC GGCCGGGGC            GCAATGGGCGTTCAG 100 37
        catC NONE
CXD92_RS01075 NONE
        pcaD NONE
CXD92_RS01065  207924 ..  207936 -  -4.7  -3.73068   GGCCGAATGCAACAA                GTCGG CAA CCGGC                AAGACCGGCGACGAG  58 310
CXD92_RS01035  202852 ..  202862 -  -8.2  -3.28712   GGCGCGGGTGGACAA                 CGCC TAT GGCG                 ACCGCAACCTGGTGT  59 217
CXD92_RS00975 NONE
CXD92_RS00970 NONE
CXD92_RS00965  188275 ..  188287 -  -4.8  -3.41051   GCAGTTCGACGAGAA                GTCG TTCGT CGAC                TTCAAGGGCGATGTC  52 372
CXD92_RS00940  180910 ..  180939 - -13.5   -4.2828   GCTCAGGCATGAAAA       CGCGCCGCCA-GGC CGT GCCACGGCGGCGCT       GCAGGGGCCGGCGGG  91 50
CXD92_RS00935  178601 ..  178627 - -20.8  -3.55444   GCCGCAGGCCTGAAA         CGGCCGGCCCGC GTG GCGGGCCGGCGG         CGGCGCGCTCAGCGC 100 34
         bfr  173561 ..  173582 - -17.3  -3.75629   CAGCCGCAATGCAAA           GGGCGCACC GCAT GGTGCGCCC            TTTTTCATGCCATGG  91 63
CXD92_RS00875 NONE
CXD92_RS00870  166929 ..  166984 -  -6.7  -3.15544   CGCTATCCGCACGAA TTCTCCGGCGGCCAGCGCCAGCGC-AT CTGC ATCGCGCGCGCGCTGGCCACCCG-GCC GCGCTTCCTGATCTG  52 330
CXD92_RS00860  164536 ..  164593 -  -2.7  -4.11484   CTGAACTCTTCAAAA CCATGGAAGCGGTGCGCTGGAATAT-GG CGT CCGATATCCCATGGGACGACTTCGACGG CAGCAAGCTGTCGGA  59 327
        phoB NONE
        phoR NONE
CXD92_RS00820 NONE
CXD92_RS00815  155624 ..  155651 -  -2.7  -2.66316   CGGCCGACGATAGCA       GGGCG--GGACTG ACCT CAGTCTGTCGCCC        GGATTACGCGTTTGT  39 12
CXD92_RS00810  154988 ..  155000 -  -7.7  -3.78934   TTGCCTGTACAACAA                GGGTT GAA AACCC                CCCCCCCATTGTGGA  66 96
CXD92_RS00805  153495 ..  153510 -  -3.2  -3.73775   TCGAGCTCGACGAAA              TCGACG CCAT CGCCAA               CCTGGTGCGCCACGG  55 282
CXD92_RS00795 NONE
        pxpB NONE
CXD92_RS00785  150085 ..  150107 -    -9  -3.01712   TCCGGTCGGCGAAGA           CTTCCTGCGC CGC GCGCAGGCCG           ATGGCGCGGGCAGCG  57 495
CXD92_RS00770  147840 ..  147852 -  -5.5  -3.01712   GCGGCGCCGCCAATA                CCGCA TCC TGCGA                TGATGACTCGCATAG  47 111
CXD92_RS00760 NONE
CXD92_RS00755 NONE
CXD92_RS00750  143526 ..  143567 -  -9.2  -3.72027   AGCGCCTACGAACAA TGGGCGGGCGACGC-CGGC GACGA GCCGGGCGACGACCGCCTG CGCGTCGCGTAGGCC  68 125
        ilvA  136162 ..  136172 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 380
CXD92_RS00720 NONE
CXD92_RS00710  132734 ..  132774 -  -8.8  -3.05715   AATGCCGTTACCGAA CGCCAAGTCCGCGCCTGCG TGGA CGCGGGCGCGG-CTACGCT  GGGCGATCTCCAGTT  55 264
CXD92_RS00695  130456 ..  130475 - -16.4  -3.85165   CAGCGCAAATGTAAA            CGGCGCGC CAGG GCGCGCCG             TCAGGCCGGTCCGGG  91 55
        leuA  128020 ..  128048 - -16.7   -3.1372   GACCGCCGAGCAATA        CCTGGCCCACCTG GCG CAGGCGGGGCAGG        CGCGCGCGAAAGTGG  80 355
CXD92_RS00675 NONE
CXD92_RS00670  124695 ..  124739 - -17.8  -3.19653   CCAGAAGGCCAGGAA CAGCGCCGCGGCCGGC-GCAG CGAA CAACAGCCATCCGCGGCGCTG CATATCAATTCACCT  86 30
CXD92_RS00660 NONE
CXD92_RS00655  122127 ..  122137 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 60
CXD92_RS00650  121049 ..  121077 -  -2.9  -3.30701   TTCCAGGAAATTCAA        TGGGCCGCCAGCA CCA CGCTGACGGACTG        GCCGGTCTGATAGGT  46 71
CXD92_RS00645  120173 ..  120194 - -10.8  -2.84325   GCGGTGCAAACATGA           CGCCGCCA TGTCAG CGGCGGCG            CTTGTTTCACTCGTC  61 32
CXD92_RS00640  119063 ..  119077 - -12.8  -3.48276   CGGTGGTTCACAGAA               CCGCCG CGT CGGCGG               CGAAGAAATGCTGTC  73 3
CXD92_RS00635 NONE
CXD92_RS00630 NONE
CXD92_RS00625  115862 ..  115880 - -17.4   -5.1971   AGGAAAAAGCAAAAA             GGCCGCGC TGG GCGCGGCC             ATGAGAAAACAGGTG 100 182
CXD92_RS00605 NONE
CXD92_RS00600  111212 ..  111226 -    -7  -2.90714   TTAAAGCGTTACAGA               CTGCGG ATG CCGCGG               GGAAGTTCCATGGCG  50 43
CXD92_RS00595  110499 ..  110518 - -11.4  -4.08144   CCCATCAACGACAAA            GCCTCCGC ATGG ACGGAGGC             TTTGTGGCGTCGGGG  82 60
CXD92_RS00580 NONE
        rfbB NONE
        rfbD NONE
        rfbC  104821 ..  104856 - -16.1  -3.14878   GGCGTCAACTGAAGA    CGCGCGGGCCGCTAC GCATAG GTATCGGCCCGCGCC     AGCGCCACGCCCTGG  81 1
CXD92_RS00510 NONE
CXD92_RS00505 NONE
CXD92_RS00500   94077 ..   94110 -  -9.3  -2.75481   GTTCAATTTCAAGGA     TGCCGCCCGGGACGC CATT GCGGCGGGGGCGGCG      CTGCGTGCGCCCGAC  52 204
CXD92_RS00485 NONE
CXD92_RS00480 NONE
CXD92_RS00475 NONE
CXD92_RS00470 NONE
CXD92_RS00465   86735 ..   86750 -  -7.5  -2.62515   AATTCTCGCAGATTA              GCGCG AGGCTG CGCGC               CGTGGCGTGACAGAT  50 7
CXD92_RS00460 NONE
CXD92_RS00455   84787 ..   84810 -  -9.4  -3.53012   GCGTTGGTGCGCAAA          GGCGCGACAC TGCC GGGGCGCGCC           ATTGAGTGCGAGTCA  64 107
CXD92_RS00450 NONE
CXD92_RS00445   82754 ..   82775 -  -7.9  -4.62302   GAAGAGCCGGAAAAA           CCCAGTGCG ACGG CGCACAAGG            CCAGTGGCGTGGATA  81 73
CXD92_RS00435   79481 ..   79495 - -11.4  -2.91274   CTCAGCCGAACGACA               GGCTGC CTT GCAGCC               CTTCATTGACCGCTA  61 131
CXD92_RS00425   77326 ..   77352 -  -8.7  -4.07568   CTCGCTGCTGGAAAA         GCTGCCCGC GCAGCTCCA GCAGGCAGC         CGGCCAGCTGCAGGG  72 308
CXD92_RS00415 NONE
CXD92_RS00410 NONE
        ampD NONE
CXD92_RS00400   73382 ..   73413 - -10.1  -3.25823   GGTGCTGGAGATCAA      CCCGGACCACGCGC TGGTC GCGCG-GATCCGCG      ATGCCAGCGATGCGG  63 318
CXD92_RS00390   71199 ..   71221 - -12.6  -2.82742   ACGCTTTTATAACGA           CCGGCGCCCG CAT CAGGCGCTGG           GCATGAAGACTCCGG  66 195
CXD92_RS00365   66991 ..   67001 -  -8.2  -2.54655   AAAAGGCCCAACCCA                 GGGG TAC CCCC                 AAATTGATGATCCAT  52 507
CXD92_RS00355 NONE
CXD92_RS00350   64500 ..   64513 -  -5.3   -3.5323   AACTTCAAACAAAAC               TATCG CACT CGATA                TCAAGCGCATCGATC  54 1
CXD92_RS00345 NONE
CXD92_RS00340   63284 ..   63310 -  -4.3  -2.78384   GCGCGGCCCATGATA        TCCGTGCCC-CC ACCG GGTGGGAACGGT         ACGACCAGTGTAATA  43 189
CXD92_RS00335   62061 ..   62083 -  -8.4  -4.09685   GGTGATGGCGTAAAA           GGGCATAGCG ATC CGCTATATCC           AGCCTGGCAAGCCAA  72 385
CXD92_RS00325   60987 ..   60998 -    -3  -5.30348   ACTTAACAATAAAAA                TTCA AATA TGAA                 TGTTTAATTTAGTTA  89 105
CXD92_RS00320 NONE
CXD92_RS00315   58900 ..   58930 -  -5.3  -3.73068   GGTCGAAGCCAACAA       CCCCACCACCAGC ATCCA GCTGGTCGTGGCC       GGCATAGGGCTGGGT  57 344
CXD92_RS00305 NONE
CXD92_RS00300 NONE
CXD92_RS00295 NONE
CXD92_RS00290 NONE
CXD92_RS00285 NONE
CXD92_RS00280   53379 ..   53401 -  -4.8  -3.76482   CGACACCAGCAAGAA           CCTGGTCG AGGAAGG CGACAAGG           GCAAGCGCTACGCGC  58 247
CXD92_RS00235   45237 ..   45272 -  -2.4  -4.16842   TTCATGCTCAAGAAA    CGCGTGCGGATCCTG TGGCAGG CCGGCTGCGC-CGCG    CTGCTGCTGGCCGCC  61 474
CXD92_RS00215   43266 ..   43306 - -20.6  -3.53012   GTCTTGGCCGTCAAA CCG-CAGTGTGCCTGTCCC AGCG GGGACAGGCACACTGGCCG  CAGTTGGGACAGGCA 100 66
CXD92_RS00175   35576 ..   35594 - -13.1  -2.84298   GACAGTTCACAACTA             GCGCGGC GCCTG GCCGCGC             GGCAGCCAGTGCCAG  69 4
CXD92_RS00155   30988 ..   31001 -  -3.7  -2.70932   TCTCGCCGCGAATCA               TCGCC TGGC GGCGG                ATCCGGCCAGCATGG  41 94
CXD92_RS00150 NONE
CXD92_RS00145 NONE
CXD92_RS00140 NONE
CXD92_RS00135   28287 ..   28297 -  -6.8  -3.54424   TTCCAGTTTCTCAAA                 TCCG GTT CGGA                 TGAACCATGCATACA  58 43
CXD92_RS00130   26859 ..   26875 -  -5.8  -3.53012   TGCGCTGCCTGCAAA             GC-GGCG CGGA CGCCTGC              GTGCCCCTGCCGGCC  55 433
CXD92_RS00115   24044 ..   24068 -  -7.7  -2.97021   TCGGCAAAGATGATA          TCCAGGCCCAC TGC GCGGGCCTCGC          CCAGCTTGTCCAGCA  53 310
CXD92_RS00100   20076 ..   20099 - -16.8  -5.50499   CGACAGCCAAAAAAA          GGCCGCTGAT GCAT ATCAGCGGCC           TTTTGCTTGACGCGG 100 53
